-- dump date   	20240506_003451
-- class       	Genbank::Contig
-- table       	contig_comment
-- id	comment
NC_014910.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002449.1.REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. StamsREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl)REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BCREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: FacultativeREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77 Pseudo Genes (internal stop)      :: 3 of 77REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77 Pseudo Genes (internal stop)      :: 3 of 77 Pseudo Genes (multiple problems)  :: 7 of 77REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77 Pseudo Genes (internal stop)      :: 3 of 77 Pseudo Genes (multiple problems)  :: 7 of 77 CRISPR Arrays                     :: 1REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77 Pseudo Genes (internal stop)      :: 3 of 77 Pseudo Genes (multiple problems)  :: 7 of 77 CRISPR Arrays                     :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002449.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77 Pseudo Genes (internal stop)      :: 3 of 77 Pseudo Genes (multiple problems)  :: 7 of 77 CRISPR Arrays                     :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.
NC_014908.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002450.1.REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. StamsREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl)REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BCREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: FacultativeREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77 Pseudo Genes (internal stop)      :: 3 of 77REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77 Pseudo Genes (internal stop)      :: 3 of 77 Pseudo Genes (multiple problems)  :: 7 of 77REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77 Pseudo Genes (internal stop)      :: 3 of 77 Pseudo Genes (multiple problems)  :: 7 of 77 CRISPR Arrays                     :: 1REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77 Pseudo Genes (internal stop)      :: 3 of 77 Pseudo Genes (multiple problems)  :: 7 of 77 CRISPR Arrays                     :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002450.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77 Pseudo Genes (internal stop)      :: 3 of 77 Pseudo Genes (multiple problems)  :: 7 of 77 CRISPR Arrays                     :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.
NC_014911.1	REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002451.1.REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. StamsREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl)REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BCREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: FacultativeREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release)REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram-REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30xREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGSREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77 Pseudo Genes (internal stop)      :: 3 of 77REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77 Pseudo Genes (internal stop)      :: 3 of 77 Pseudo Genes (multiple problems)  :: 7 of 77REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77 Pseudo Genes (internal stop)      :: 3 of 77 Pseudo Genes (multiple problems)  :: 7 of 77 CRISPR Arrays                     :: 1REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77 Pseudo Genes (internal stop)      :: 3 of 77 Pseudo Genes (multiple problems)  :: 7 of 77 CRISPR Arrays                     :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002451.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4086861 Source DNA and organism available from Alfons J.M. Stams (Fons.Stams@wur.nl) Contacts: Alfons J.M. Stams (Fons.Stams@wur.nl)           Tanja Woyke (microbe@cuba.jgi-psf.org) Annotation done by JGI-ORNL and JGI-PGF Finishing done by JGI-LANL The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. it is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type  :: bacteria_archaea project_name        :: Alicycliphilus denitrificans BC collection_date     :: Missing lat_lon             :: Missing depth               :: Missing alt_elev            :: Missing country             :: Missing environment         :: Missing num_replicons       :: 3 ref_biomaterial     :: JCM 14587 biotic_relationship :: Free living trophic_level       :: Missing rel_to_oxygen       :: Facultative isol_growth_condt   :: Missing sequencing_meth     :: WGS assembly            :: Newbler v. 2.2 (pre-release) finishing_strategy  :: Finished GOLD Stamp ID       :: Gi03280 Greengenes ID       :: 39244 Temperature Range   :: Mesophile Gram Staining       :: Gram- Diseases            :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal           :: Finished Current Finishing Status :: Finished Assembly Method          :: Newbler v. 2.3 Genome Coverage          :: 30x Sequencing Technology    :: WGS ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider               :: NCBI RefSeq Annotation Name                   :: GCF_000179015.2-RS_2024_03_27 Annotation Date                   :: 03/27/2024 01:38:42 Annotation Pipeline               :: NCBI Prokaryotic Genome                                      Annotation Pipeline (PGAP) Annotation Method                 :: Best-placed reference protein                                      set; GeneMarkS-2+ Annotation Software revision      :: 6.7 Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total)                     :: 4,719 CDSs (total)                      :: 4,653 Genes (coding)                    :: 4,576 CDSs (with protein)               :: 4,576 Genes (RNA)                       :: 66 rRNAs                             :: 3, 3, 3 (5S, 16S, 23S) complete rRNAs                    :: 3, 3, 3 (5S, 16S, 23S) tRNAs                             :: 54 ncRNAs                            :: 3 Pseudo Genes (total)              :: 77 CDSs (without protein)            :: 77 Pseudo Genes (ambiguous residues) :: 0 of 77 Pseudo Genes (frameshifted)       :: 18 of 77 Pseudo Genes (incomplete)         :: 63 of 77 Pseudo Genes (internal stop)      :: 3 of 77 Pseudo Genes (multiple problems)  :: 7 of 77 CRISPR Arrays                     :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.