-- dump date 20140618_193601 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_691721.1 110832862 4211395 1..1425 1 NC_008260.1 identified by match to PFAM protein family HMMPF03969 and KEGG dnaA in multiple genomes. InterPro: Bacterial chromosomal replication initiator protein DnaA; High confidence in function and specificity; chromosome replication initiator DnaA 1425 dnaA 4211395 dnaA Alcanivorax borkumensis SK2 chromosome replication initiator DnaA YP_691721.1 1 D 393595 CDS YP_691722.1 110832863 4211401 1478..2578 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; DNA polymerase III subunit beta 2578 dnaN 4211401 dnaN Alcanivorax borkumensis SK2 DNA polymerase III subunit beta YP_691722.1 1478 D 393595 CDS YP_691723.1 110832864 4211659 2777..3775 1 NC_008260.1 identified by sequence similarity; InterPro: RecF protein; Hypothetical protein; DNA replication and repair protein RecF 3775 recF 4211659 recF Alcanivorax borkumensis SK2 DNA replication and repair protein RecF YP_691723.1 2777 D 393595 CDS YP_691724.1 110832865 4212664 3785..6202 1 NC_008260.1 identified by sequence similarity; InterPro: DNA topoisomerase II; High confidence in function and specificity; DNA gyrase subunit B 6202 gyrB 4212664 gyrB Alcanivorax borkumensis SK2 DNA gyrase subunit B YP_691724.1 3785 D 393595 CDS YP_691725.1 110832866 4211477 complement(6297..6653) 1 NC_008260.1 (type IV pili sensor histidine kinase/responseregulator PilL/ChpA fusion protein) identified by match to TIGR protein family HMMTIGR01387 InterPro: H-NS histone family; Family membership; DNA-binding protein H-NS 6653 hns 4211477 hns Alcanivorax borkumensis SK2 DNA-binding protein H-NS YP_691725.1 6297 R 393595 CDS YP_691726.1 110832867 4211391 complement(6806..7534) 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; 1-acyl-sn-glycerol-3-phosphate acyltransferase 7534 plsC 4211391 plsC Alcanivorax borkumensis SK2 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_691726.1 6806 R 393595 CDS YP_691727.1 110832868 4213804 complement(7531..8079) 1 NC_008260.1 identified by sequence similarity; identified by match to TIGRFAM protein family HMMTIGR00213; Function unclear; histidinol-phosphatase, putatitve 8079 4213804 ABO_0007 Alcanivorax borkumensis SK2 histidinol-phosphatase, putatitve YP_691727.1 7531 R 393595 CDS YP_691728.1 110832869 4212770 complement(8198..10270) 1 NC_008260.1 (glycyl-tRNA synthetase tetrameric type betasubunit) identified by match to TIGR protein family HMMTIGR00211 InterPro: Glycyl-tRNA synthetase beta subunit; High confidence in function and specificity; glycyl-tRNA synthetase 10270 glyS 4212770 glyS Alcanivorax borkumensis SK2 glycyl-tRNA synthetase YP_691728.1 8198 R 393595 CDS YP_691729.1 110832870 4212769 complement(10270..11274) 1 NC_008260.1 glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 11274 glyQ 4212769 glyQ Alcanivorax borkumensis SK2 glycyl-tRNA synthetase subunit alpha YP_691729.1 10270 R 393595 CDS YP_691730.1 110832871 4211983 11436..12014 1 NC_008260.1 identified by sequencesimilarity; InterPro: DNA-3-methyladenine glycosylase I; High confidence in function and specificity; DNA-3-methyladenine glycosidase I 12014 tag 4211983 tag Alcanivorax borkumensis SK2 DNA-3-methyladenine glycosidase I YP_691730.1 11436 D 393595 CDS YP_691731.1 110832872 4213805 complement(12163..12939) 1 NC_008260.1 hypothetical protein 12939 4213805 ABO_0011 Alcanivorax borkumensis SK2 hypothetical protein YP_691731.1 12163 R 393595 CDS YP_691732.1 110832873 4213806 13454..14797 1 NC_008260.1 hypothetical protein 14797 4213806 ABO_0012 Alcanivorax borkumensis SK2 hypothetical protein YP_691732.1 13454 D 393595 CDS YP_691733.1 110832874 4213807 14888..16369 1 NC_008260.1 hypothetical protein 16369 4213807 ABO_0013 Alcanivorax borkumensis SK2 hypothetical protein YP_691733.1 14888 D 393595 CDS YP_691734.1 110832875 4213808 16498..17004 1 NC_008260.1 transcriptional regulator MarR family identified by sequencesimilarity; InterPro: Bacterial regulatory protein MarR family; Family membership; MarR family transcriptional regulator 17004 4213808 ABO_0014 Alcanivorax borkumensis SK2 MarR family transcriptional regulator YP_691734.1 16498 D 393595 CDS YP_691735.1 110832876 4213809 17015..19123 1 NC_008260.1 inner membrane protein as shown by TMHMM hits; hypothetical protein 19123 4213809 ABO_0015 Alcanivorax borkumensis SK2 hypothetical protein YP_691735.1 17015 D 393595 CDS YP_691736.1 110832877 4213569 19113..19313 1 NC_008260.1 identified by sequence similarity; hypothetical protein 19313 4213569 ABO_0016 Alcanivorax borkumensis SK2 hypothetical protein YP_691736.1 19113 D 393595 CDS YP_691737.1 110832878 4213570 19327..20316 1 NC_008260.1 Family membership; HlyD family secretion protein 20316 4213570 ABO_0017 Alcanivorax borkumensis SK2 HlyD family secretion protein YP_691737.1 19327 D 393595 CDS YP_691738.1 110832879 4213571 20469..21194 1 NC_008260.1 hypothetical protein 21194 4213571 ABO_0018 Alcanivorax borkumensis SK2 hypothetical protein YP_691738.1 20469 D 393595 CDS YP_691739.1 110832880 4211592 complement(21211..22128) 1 NC_008260.1 transcriptional regulator (AraC family) identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; High confidence in function and specificity; transcriptional regulator MmsR 22128 mmsR 4211592 mmsR Alcanivorax borkumensis SK2 transcriptional regulator MmsR YP_691739.1 21211 R 393595 CDS YP_691740.1 110832881 4211589 22278..23777 1 NC_008260.1 (methylmalonate semialdehyde dehydrogenase) identified by sequence similarity; InterPro: Aldehyde dehydrogenase family distal valine metabolic pathway; High confidence in function and specificity; methylmalonate semialdehyde dehydrogenase 23777 mmsA 4211589 mmsA Alcanivorax borkumensis SK2 methylmalonate semialdehyde dehydrogenase YP_691740.1 22278 D 393595 CDS YP_691741.1 110832882 4211803 23919..25070 1 NC_008260.1 identified by sequencesimilarity; InterPro: Acyl-CoA dehydrogenase; Family membership; acyl-CoA dehydrogenase 25070 acdA 4211803 acdA Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_691741.1 23919 D 393595 CDS YP_691742.1 110832883 4211590 25190..26080 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; 3-hydroxyisobutyrate dehydrogenase 26080 mmsB 4211590 mmsB Alcanivorax borkumensis SK2 3-hydroxyisobutyrate dehydrogenase YP_691742.1 25190 D 393595 CDS YP_691743.1 110832884 4213572 complement(26119..27051) 1 NC_008260.1 conserved hypothetical protein; Family membership; hypothetical protein 27051 4213572 ABO_0023 Alcanivorax borkumensis SK2 hypothetical protein YP_691743.1 26119 R 393595 CDS YP_691744.1 110832885 4213573 27502..27678 1 NC_008260.1 identified by Glimmer2; has high similarity to PP0135; hypothetical protein 27678 4213573 ABO_0024 Alcanivorax borkumensis SK2 hypothetical protein YP_691744.1 27502 D 393595 CDS YP_691745.1 110832886 4213574 complement(27828..28688) 1 NC_008260.1 conserved hypothetical protein identified by sequence similarity; InterPro: DUF209; Family membership; pirin 28688 4213574 ABO_0025 Alcanivorax borkumensis SK2 pirin YP_691745.1 27828 R 393595 CDS YP_691746.1 110832887 4213575 complement(28756..29760) 1 NC_008260.1 glutathione S-transferase domain protein identified by match to PFAM protein family HMMPF00043 InterPro: Glutathione S-transferase C terminus; Family membership; glutathione S-transferase domain-containing protein 29760 4213575 ABO_0026 Alcanivorax borkumensis SK2 glutathione S-transferase domain-containing protein YP_691746.1 28756 R 393595 CDS YP_691747.1 110832888 4211814 complement(29799..30395) 1 NC_008260.1 (acyl carrier protein phosphodiesterase ) identified by sequencesimilarity; High confidence in function and specificity; ACP phosphodieterase 30395 acpD 4211814 acpD Alcanivorax borkumensis SK2 ACP phosphodieterase YP_691747.1 29799 R 393595 CDS YP_691748.1 110832889 4213576 30525..31463 1 NC_008260.1 transcriptional regulator LysR family identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family; High confidence in function and specificity; LysR family transcriptional regulator 31463 4213576 ABO_0028 Alcanivorax borkumensis SK2 LysR family transcriptional regulator YP_691748.1 30525 D 393595 CDS YP_691749.1 110832890 4213577 31494..32021 1 NC_008260.1 hypothetical protein 32021 4213577 ABO_0029 Alcanivorax borkumensis SK2 hypothetical protein YP_691749.1 31494 D 393595 CDS YP_691750.1 110832891 4213578 complement(32005..33318) 1 NC_008260.1 sensor histidine kinase identified by sequence similarity; InterPro: Histidine kinase C-terminal; High confidence in function and specificity; sensor histidine kinase 33318 4213578 ABO_0030 Alcanivorax borkumensis SK2 sensor histidine kinase YP_691750.1 32005 R 393595 CDS YP_691751.1 110832893 4211570 complement(33315..33977) 1 NC_008260.1 probable 2-component transcription regulator identified by match to TIGR protein family HMMTIGR01387 InterPro: Response regulator receiver domain; High confidence in function and specificity; transcriptional regulator QseB 33977 ygiX 4211570 ygiX Alcanivorax borkumensis SK2 transcriptional regulator QseB YP_691751.1 33315 R 393595 CDS YP_691752.1 110832892 4213579 33972..34898 1 NC_008260.1 identified by sequence similarity. InterPro: Thioredoxin; hypothetical protein 34898 4213579 ABO_0032 Alcanivorax borkumensis SK2 hypothetical protein YP_691752.1 33972 D 393595 CDS YP_691753.1 110832894 4211412 34895..35443 1 NC_008260.1 identified by sequencesimilarity; High confidence in function and specificity; thiol:disulfide interchange protein DsbG 35443 dsbG 4211412 dsbG Alcanivorax borkumensis SK2 thiol:disulfide interchange protein DsbG YP_691753.1 34895 D 393595 CDS YP_691754.1 110832895 4211157 complement(35544..36875) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Dihydroorotase multifunctional complex type; Hypothetical protein; dihydroorotase, multifunctional complex type 36875 pyrC-2 4211157 pyrC-2 Alcanivorax borkumensis SK2 dihydroorotase, multifunctional complex type YP_691754.1 35544 R 393595 CDS YP_691755.1 110832896 4211154 complement(36823..37836) 1 NC_008260.1 catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase 37836 pyrB 4211154 pyrB Alcanivorax borkumensis SK2 aspartate carbamoyltransferase YP_691755.1 36823 R 393595 CDS YP_691756.1 110832897 4211644 complement(37839..38387) 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; transcriptional regulator PyrR 38387 pyrR 4211644 pyrR Alcanivorax borkumensis SK2 transcriptional regulator PyrR YP_691756.1 37839 R 393595 CDS YP_691757.1 110832898 4213580 38616..39209 1 NC_008260.1 Cytochrome b561 family; Family membership; cytochrome 39209 4213580 ABO_0037 Alcanivorax borkumensis SK2 cytochrome YP_691757.1 38616 D 393595 CDS YP_691758.1 110832899 4213581 39228..39824 1 NC_008260.1 hypothetical protein 39824 4213581 ABO_0038 Alcanivorax borkumensis SK2 hypothetical protein YP_691758.1 39228 D 393595 CDS YP_691759.1 110832900 4213582 complement(39944..40759) 1 NC_008260.1 hypothetical protein 40759 4213582 ABO_0039 Alcanivorax borkumensis SK2 hypothetical protein YP_691759.1 39944 R 393595 CDS YP_691760.1 110832901 4213583 40889..41335 1 NC_008260.1 conserved hypothetical protein; hypothetical protein 41335 4213583 ABO_0040 Alcanivorax borkumensis SK2 hypothetical protein YP_691760.1 40889 D 393595 CDS YP_691761.1 110832902 4213584 41477..41950 1 NC_008260.1 hypothetical protein 41950 4213584 ABO_0041 Alcanivorax borkumensis SK2 hypothetical protein YP_691761.1 41477 D 393595 CDS YP_691762.1 110832903 4213585 complement(42108..43025) 1 NC_008260.1 Family membership; phosphotransferase family protein 43025 4213585 ABO_0042 Alcanivorax borkumensis SK2 phosphotransferase family protein YP_691762.1 42108 R 393595 CDS YP_691763.1 110832904 4213354 43290..44318 1 NC_008260.1 (lipase/esterase family protein) identified by sequence similarity; InterPro: Esterase/lipase/thioesterase/carboxlesterase family active site; High confidence in function and specificity; lipase/esterase 44318 estA 4213354 estA Alcanivorax borkumensis SK2 lipase/esterase YP_691763.1 43290 D 393595 CDS YP_691764.1 110832905 4213586 complement(44641..45114) 1 NC_008260.1 AhpC/TSA family protein identified by sequencesimilarity; Family membership; AhpC/TSA family protein 45114 4213586 ABO_0044 Alcanivorax borkumensis SK2 AhpC/TSA family protein YP_691764.1 44641 R 393595 CDS YP_691765.1 110832906 4213587 complement(45377..47296) 1 NC_008260.1 Hypothetical protein; hypothetical protein 47296 4213587 ABO_0045 Alcanivorax borkumensis SK2 hypothetical protein YP_691765.1 45377 R 393595 CDS YP_691766.1 110832907 4213926 complement(47966..50062) 1 NC_008260.1 uncharacterized protein containing a von Willebrand factor type (vWA) domain identified by match to PFAM protein family HMMPF00092 InterPro: von Willebrand factor type A domain; Family membership; von Willebrand factor A 50062 4213926 ABO_0046 Alcanivorax borkumensis SK2 von Willebrand factor A YP_691766.1 47966 R 393595 CDS YP_691767.1 110832908 4213927 complement(50181..50675) 1 NC_008260.1 hypothetical protein 50675 4213927 ABO_0047 Alcanivorax borkumensis SK2 hypothetical protein YP_691767.1 50181 R 393595 CDS YP_691768.1 110832909 4213928 complement(50728..51213) 1 NC_008260.1 nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; nucleotide-binding protein 51213 4213928 ABO_0048 Alcanivorax borkumensis SK2 nucleotide-binding protein YP_691768.1 50728 R 393595 CDS YP_691769.1 110832910 4213929 51434..52393 1 NC_008260.1 hypothetical protein 52393 4213929 ABO_0049 Alcanivorax borkumensis SK2 hypothetical protein YP_691769.1 51434 D 393595 CDS YP_691770.1 110832911 4213930 52407..52673 1 NC_008260.1 hypothetical protein 52673 4213930 ABO_0050 Alcanivorax borkumensis SK2 hypothetical protein YP_691770.1 52407 D 393595 CDS YP_691771.1 110832912 4212660 52974..53705 1 NC_008260.1 Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 53705 guaA 4212660 guaA Alcanivorax borkumensis SK2 glutamine amidotransferase YP_691771.1 52974 D 393595 CDS YP_691772.1 110832913 4213931 complement(53898..54602) 1 NC_008260.1 hypothetical protein 54602 4213931 ABO_0052 Alcanivorax borkumensis SK2 hypothetical protein YP_691772.1 53898 R 393595 CDS YP_691773.1 110832914 4213932 54715..55335 1 NC_008260.1 (conserved hypothetical protein homologous to acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase) identified by match to PFAM protein family HMMPF00132 InterPro: Bacterial transferase hexapeptide repeat; Family membership; acetyltransferase 55335 4213932 ABO_0053 Alcanivorax borkumensis SK2 acetyltransferase YP_691773.1 54715 D 393595 CDS YP_691774.1 110832915 4213933 55586..56191 1 NC_008260.1 transcriptional regulator TetR family identified by sequencesimilarity; InterPro: Bacterial regulatory proteins TetR family; Family membership; TetR family transcriptional regulator 56191 4213933 ABO_0054 Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_691774.1 55586 D 393595 CDS YP_691775.1 110832916 4213934 56321..58141 1 NC_008260.1 acyltransferase identified by match to PFAM protein family HMMPF04241 InterPro: Phospholipid and glycerol acyltransferase (from motifs_6.msf); Family membership; acyltransferase 58141 4213934 ABO_0055 Alcanivorax borkumensis SK2 acyltransferase YP_691775.1 56321 D 393595 CDS YP_691776.1 110832917 4213935 58413..58958 1 NC_008260.1 hypothetical protein 58958 4213935 ABO_0056 Alcanivorax borkumensis SK2 hypothetical protein YP_691776.1 58413 D 393595 CDS YP_691777.1 110832918 4213936 58962..60218 1 NC_008260.1 hypothetical protein 60218 4213936 ABO_0057 Alcanivorax borkumensis SK2 hypothetical protein YP_691777.1 58962 D 393595 CDS YP_691778.1 110832919 4213937 60382..60918 1 NC_008260.1 Cytochrome b561 family membership; cytochrome b561 60918 4213937 ABO_0058 Alcanivorax borkumensis SK2 cytochrome b561 YP_691778.1 60382 D 393595 CDS YP_691779.1 110832920 4213938 61046..61468 1 NC_008260.1 peptidyl-tRNA hydrolase domain protein identified by sequence similarity; InterPro: Class I peptide chain release factor; Family membership; peptidyl-tRNA hydrolase 61468 4213938 ABO_0059 Alcanivorax borkumensis SK2 peptidyl-tRNA hydrolase YP_691779.1 61046 D 393595 CDS YP_691780.1 110832921 4213939 61921..63291 1 NC_008260.1 hypothetical protein 63291 4213939 ABO_0060 Alcanivorax borkumensis SK2 hypothetical protein YP_691780.1 61921 D 393595 CDS YP_691781.1 110832922 4213940 63683..64639 1 NC_008260.1 zinc-containing 'long-chain' alcohol dehydrogenases identified by sequencesimilarity; Family membership; alcohol dehydrogenase 64639 4213940 ABO_0061 Alcanivorax borkumensis SK2 alcohol dehydrogenase YP_691781.1 63683 D 393595 CDS YP_691782.1 110832923 4213941 complement(64661..65128) 1 NC_008260.1 hypothetical protein 65128 4213941 ABO_0062 Alcanivorax borkumensis SK2 hypothetical protein YP_691782.1 64661 R 393595 CDS YP_691783.1 110832924 4213942 complement(65166..67400) 1 NC_008260.1 hypothetical protein 67400 4213942 ABO_0063 Alcanivorax borkumensis SK2 hypothetical protein YP_691783.1 65166 R 393595 CDS YP_691784.1 110832925 4213943 67549..68013 1 NC_008260.1 hemerythrin-like protein (family member ship) identified by sequencesimilarity; InterPro: Hemerythrin; Family membership; hypothetical protein 68013 4213943 ABO_0064 Alcanivorax borkumensis SK2 hypothetical protein YP_691784.1 67549 D 393595 CDS YP_691785.1 110832926 4213944 complement(68167..68418) 1 NC_008260.1 hypothetical protein 68418 4213944 ABO_0065 Alcanivorax borkumensis SK2 hypothetical protein YP_691785.1 68167 R 393595 CDS YP_691786.1 110832927 4213945 complement(68748..69449) 1 NC_008260.1 fumarylacetoacetate hydrolase family protein) identified by match to PFAM protein family HMMPF01557 InterPro: Fumarylacetoacetate (FAA) hydrolase family; Family membership; fumarylacetoacetate hydrolase family protein 69449 4213945 ABO_0066 Alcanivorax borkumensis SK2 fumarylacetoacetate hydrolase family protein YP_691786.1 68748 R 393595 CDS YP_691787.1 110832928 4213432 complement(69442..70839) 1 NC_008260.1 oxidoreductase FAD-binding identified by match to TIGR protein family HMMTIGR01679 InterPro: FAD linked oxidase C-terminal; Function unclear; oxidoreductase 70839 4213432 ABO_0067 Alcanivorax borkumensis SK2 oxidoreductase YP_691787.1 69442 R 393595 CDS YP_691788.1 110832929 4213629 70979..72208 1 NC_008260.1 catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 72208 serA 4213629 serA Alcanivorax borkumensis SK2 D-3-phosphoglycerate dehydrogenase YP_691788.1 70979 D 393595 CDS YP_691789.1 110832930 4213433 72335..73702 1 NC_008260.1 conserved hypothetical protein belongs to the family DUF394 (protein of unknown function) identified by sequence similarity; InterPro: TPR repeat; hypothetical protein 73702 4213433 ABO_0069 Alcanivorax borkumensis SK2 hypothetical protein YP_691789.1 72335 D 393595 CDS YP_691790.1 110832931 4213434 73699..74097 1 NC_008260.1 hypothetical protein 74097 4213434 ABO_0070 Alcanivorax borkumensis SK2 hypothetical protein YP_691790.1 73699 D 393595 CDS YP_691791.1 110832932 4213435 74141..74731 1 NC_008260.1 hypothetical protein 74731 4213435 ABO_0071 Alcanivorax borkumensis SK2 hypothetical protein YP_691791.1 74141 D 393595 CDS YP_691792.1 110832933 4213436 74931..76223 1 NC_008260.1 hypothetical protein 76223 4213436 ABO_0072 Alcanivorax borkumensis SK2 hypothetical protein YP_691792.1 74931 D 393595 CDS YP_691793.1 110832934 4213437 complement(76396..77655) 1 NC_008260.1 Region start changed from 77784 to 77655 (-129 bases) regional start was changed to be in accordance with the results of the observations.; hypothetical protein 77655 4213437 ABO_0073 Alcanivorax borkumensis SK2 hypothetical protein YP_691793.1 76396 R 393595 CDS YP_691794.1 110832935 4213438 complement(77735..78337) 1 NC_008260.1 identified by sequence similarity; Family membership; hypothetical protein 78337 4213438 ABO_0074 Alcanivorax borkumensis SK2 hypothetical protein YP_691794.1 77735 R 393595 CDS YP_691795.1 110832936 4211216 78488..80275 1 NC_008260.1 identified by sequence similarity; InterPro: Na+/H+ exchanger; High confidence in function and specificity; glutathione-regulated potassium-protonantiporter 80275 kefB 4211216 kefB Alcanivorax borkumensis SK2 glutathione-regulated potassium-protonantiporter YP_691795.1 78488 D 393595 CDS YP_691796.1 110832937 4212475 80354..82531 1 NC_008260.1 outer membrane ferric siderophore receptor identified by sequencesimilarity; InterPro: TonB-dependent receptor protein; High confidence in function and specificity; outer membrane ferric siderophore receptor 82531 fhuE 4212475 fhuE Alcanivorax borkumensis SK2 outer membrane ferric siderophore receptor YP_691796.1 80354 D 393595 CDS YP_691797.1 110832938 4213439 82568..82747 1 NC_008260.1 hypothetical protein 82747 4213439 ABO_0077 Alcanivorax borkumensis SK2 hypothetical protein YP_691797.1 82568 D 393595 CDS YP_691798.1 110832939 4213440 complement(82763..83209) 1 NC_008260.1 hypothetical protein 83209 4213440 ABO_0078 Alcanivorax borkumensis SK2 hypothetical protein YP_691798.1 82763 R 393595 CDS YP_691799.1 110832940 4213441 complement(83762..84301) 1 NC_008260.1 acyltransferase transferring groups other than amino-acyl groups; Specificity unclear; acyltransferase 84301 4213441 ABO_0079 Alcanivorax borkumensis SK2 acyltransferase YP_691799.1 83762 R 393595 CDS YP_691800.1 110832941 4211696 complement(84351..86036) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF01019 InterPro: Gamma-glutamyltranspeptidase; High confidence in function and specificity; gamma-glutamyltransferase 86036 ggt 4211696 ggt Alcanivorax borkumensis SK2 gamma-glutamyltransferase YP_691800.1 84351 R 393595 CDS YP_691801.1 110832942 4212469 complement(86270..86830) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00482 InterPro: Cytidylyltransferase; High confidence in function and specificity; pantetheine-phosphate adenylyltransferase 86830 coaD 4212469 coaD Alcanivorax borkumensis SK2 pantetheine-phosphate adenylyltransferase YP_691801.1 86270 R 393595 CDS YP_691802.1 110832943 4213442 87194..87451 1 NC_008260.1 truncated transposase OrfA identified by match to PFAM protein family HMMPF04218; Family membership; transposase 87451 4213442 ABO_0082 Alcanivorax borkumensis SK2 transposase YP_691802.1 87194 D 393595 CDS YP_691803.1 110832944 4213443 87866..88330 1 NC_008260.1 transposase identified by match to PFAM protein family HMMPF00665; InterPro: Integrase catalytic core; Family membership; transposase 88330 4213443 ABO_0083 Alcanivorax borkumensis SK2 transposase YP_691803.1 87866 D 393595 CDS YP_691804.1 110832945 4213444 complement(88657..89538) 1 NC_008260.1 hypothetical protein 89538 4213444 ABO_0084 Alcanivorax borkumensis SK2 hypothetical protein YP_691804.1 88657 R 393595 CDS YP_691805.1 110832946 4213445 complement(89667..91277) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF00732; InterPro: Glucose-methanol-choline (GMC) oxidoreductase; Family membership; GMC oxidoreductase family protein 91277 4213445 ABO_0085 Alcanivorax borkumensis SK2 GMC oxidoreductase family protein YP_691805.1 89667 R 393595 CDS YP_691806.1 110832947 4213446 complement(91337..91870) 1 NC_008260.1 hypothetical protein 91870 4213446 ABO_0086 Alcanivorax borkumensis SK2 hypothetical protein YP_691806.1 91337 R 393595 CDS YP_691807.1 110832948 4211294 complement(92020..93462) 1 NC_008260.1 Alcanivorax borkumensis aldehyde dehydrogenase,; Specificity unclear; aldehyde dehydrogenase 93462 aldH 4211294 aldH Alcanivorax borkumensis SK2 aldehyde dehydrogenase YP_691807.1 92020 R 393595 CDS YP_691808.1 110832949 4211334 93591..94292 1 NC_008260.1 phaD, transcriptional regulator TetR family InterPro: Bacterial regulatory proteins TetR family; High confidence in function and specificity; TetR family transcriptional regulator 94292 phaD 4211334 phaD Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_691808.1 93591 D 393595 CDS YP_691809.1 110832951 4213447 complement(94310..95479) 1 NC_008260.1 (hydrolase alpha/beta fold family) identified by match to TIGR protein family HMMTIGR01250 InterPro: Esterase/lipase/thioesterase family active site enzymes of the alpha/beta fold enzymes operate on substrates with different chemical composition in various biological contexts; Family membership; alpha/beta hydrolase 95479 4213447 ABO_0089 Alcanivorax borkumensis SK2 alpha/beta hydrolase YP_691809.1 94310 R 393595 CDS YP_691810.1 110832950 4213448 95402..96124 1 NC_008260.1 hypothetical protein 96124 4213448 ABO_0090 Alcanivorax borkumensis SK2 hypothetical protein YP_691810.1 95402 D 393595 CDS YP_691811.1 110832952 4213449 96114..96530 1 NC_008260.1 Conserved hypothetical protein; hypothetical protein 96530 4213449 ABO_0091 Alcanivorax borkumensis SK2 hypothetical protein YP_691811.1 96114 D 393595 CDS YP_691812.1 110832953 4213450 96622..97491 1 NC_008260.1 High confidence in function and specificity; hypothetical protein 97491 4213450 ABO_0092 Alcanivorax borkumensis SK2 hypothetical protein YP_691812.1 96622 D 393595 CDS YP_691813.1 110832954 4213608 97507..98082 1 NC_008260.1 (transcriptional regulator AraC family) identified by match to PFAM protein family HMMPF00165 InterPro: ThiJ/PfpI family Transcription regulation; DNA-binding; Family membership; AraC family transcriptional regulator 98082 4213608 ABO_0093 Alcanivorax borkumensis SK2 AraC family transcriptional regulator YP_691813.1 97507 D 393595 CDS YP_691814.1 110832955 4213609 complement(98144..98815) 1 NC_008260.1 conserved hypothetical protein; Function unclear; hypothetical protein 98815 4213609 ABO_0094 Alcanivorax borkumensis SK2 hypothetical protein YP_691814.1 98144 R 393595 CDS YP_691815.1 110832956 4211189 complement(98924..99466) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Hypothetical protein; lactoylglutathione lyase 99466 gloA 4211189 gloA Alcanivorax borkumensis SK2 lactoylglutathione lyase YP_691815.1 98924 R 393595 CDS YP_691816.1 110832957 4213610 complement(99693..100652) 1 NC_008260.1 SPFH domain/Band 7 family protein identified by sequence similarity; InterPro: Band 7 protein; Family membership; hypothetical protein 100652 4213610 ABO_0096 Alcanivorax borkumensis SK2 hypothetical protein YP_691816.1 99693 R 393595 CDS YP_691817.1 110832958 4213611 complement(100728..101201) 1 NC_008260.1 Hypothetical protein; hypothetical protein 101201 4213611 ABO_0097 Alcanivorax borkumensis SK2 hypothetical protein YP_691817.1 100728 R 393595 CDS YP_691818.1 110832959 4213612 complement(101418..101966) 1 NC_008260.1 (slyD) (peptidyl-prolyl cis-trans isomerase FKBP-type) identified by sequence similarity; InterPro: FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase); Specificity unclear; peptidyl-prolyl cis-trans isomerase 101966 4213612 ABO_0098 Alcanivorax borkumensis SK2 peptidyl-prolyl cis-trans isomerase YP_691818.1 101418 R 393595 CDS YP_691819.1 110832960 4213660 complement(102202..102756) 1 NC_008260.1 cytochrome B651, Pfam: Ni_hydr_CYTB; Family membership; cytochrome B651 102756 cybB 4213660 cybB Alcanivorax borkumensis SK2 cytochrome B651 YP_691819.1 102202 R 393595 CDS YP_691820.1 110832961 4211467 complement(102820..103818) 1 NC_008260.1 lipid A biosynthesis lauroyl acyltransferase identified by sequence similarity; High confidence in function and specificity; lipid A biosynthesis lauroyl acyltransferase 103818 lpxL3 4211467 lpxL3 Alcanivorax borkumensis SK2 lipid A biosynthesis lauroyl acyltransferase YP_691820.1 102820 R 393595 CDS YP_691821.1 110832962 4213613 complement(103811..104818) 1 NC_008260.1 conserved hypothetical protein; phospholipase 104818 4213613 ABO_0101 Alcanivorax borkumensis SK2 phospholipase YP_691821.1 103811 R 393595 CDS YP_691822.1 110832963 4212456 complement(104815..105270) 1 NC_008260.1 (chemotaxis protein, ), pfam01584, CheW, CheW-like domain.; Conserved hypothetical protein; chemotaxis protein 105270 cheW 4212456 cheW Alcanivorax borkumensis SK2 chemotaxis protein YP_691822.1 104815 R 393595 CDS YP_691823.1 110832964 4212978 complement(105343..106374) 1 NC_008260.1 (protein-glutamate methylesterase CheB) identified by sequencesimilarity; InterPro: CheB methylesterase; High confidence in function and specificity; protein-glutamate methylesterase 106374 cheB 4212978 cheB Alcanivorax borkumensis SK2 protein-glutamate methylesterase YP_691823.1 105343 R 393595 CDS YP_691824.1 110832965 4212457 complement(106371..113381) 1 NC_008260.1 ChpA two-component hybrid sensor and regulator, identified by match to TIGR protein family HMMTIGR01387 InterPro: Histidine kinase C-terminal still frameshift probable component of chemotactic signal transduction system; Specificity unclear; two-component hybrid chemotactic sensor and regulator 113381 chpA 4212457 chpA Alcanivorax borkumensis SK2 two-component hybrid chemotactic sensor and regulator YP_691824.1 106371 R 393595 CDS YP_691825.1 110832966 4212454 complement(113523..114401) 1 NC_008260.1 (methyltransferase CheR-like) identified by match to PFAM protein family HMMPF00515; High confidence in function and specificity; chemotaxis protein methyltransferase 114401 cheR 4212454 cheR Alcanivorax borkumensis SK2 chemotaxis protein methyltransferase YP_691825.1 113523 R 393595 CDS YP_691826.1 110832967 4213614 complement(114433..116460) 1 NC_008260.1 Methyl-accepting chemotaxis protein (MCP) signaling domain; Specificity unclear; methyl-accepting chemotaxis protein 116460 4213614 ABO_0106 Alcanivorax borkumensis SK2 methyl-accepting chemotaxis protein YP_691826.1 114433 R 393595 CDS YP_691827.1 110832968 4211377 complement(116519..117067) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01584 InterPro: CheW-like domain; High confidence in function and specificity; type IV pili signal transduction protein PilI 117067 pilI 4211377 pilI Alcanivorax borkumensis SK2 type IV pili signal transduction protein PilI YP_691827.1 116519 R 393595 CDS YP_691828.1 110832969 4211375 complement(117079..117447) 1 NC_008260.1 identified by sequence similarity; InterPro: Response regulator receiver domain; High confidence in function and specificity; type IV pili response regulator PilH 117447 pilH 4211375 pilH Alcanivorax borkumensis SK2 type IV pili response regulator PilH YP_691828.1 117079 R 393595 CDS YP_691829.1 110832970 4211619 complement(117480..117863) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Response regulator receiver domain; High confidence in function and specificity; type IV pili response regulator PilG 117863 pilG 4211619 pilG Alcanivorax borkumensis SK2 type IV pili response regulator PilG YP_691829.1 117480 R 393595 CDS YP_691830.1 110832971 4212783 118176..119129 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01380 InterPro: Prokaryotic glutathione synthetase ATP-binding domain; High confidence in function and specificity; glutathione synthetase 119129 gshB 4212783 gshB Alcanivorax borkumensis SK2 glutathione synthetase YP_691830.1 118176 D 393595 CDS YP_691831.1 110832972 4211918 119248..120126 1 NC_008260.1 Periplasmic protein TonB, links inner and outer membranes; Family membership; TonB 120126 tonB 4211918 tonB Alcanivorax borkumensis SK2 TonB YP_691831.1 119248 D 393595 CDS YP_691832.1 110832973 4213597 120292..120858 1 NC_008260.1 (alginate biosynthesis nucleoside diphosphatekinase regulator AlgH) identifiedby sequence similarity; Family membership; alginate biosynthesis regulator AlgH 120858 algH 4213597 algH Alcanivorax borkumensis SK2 alginate biosynthesis regulator AlgH YP_691832.1 120292 D 393595 CDS YP_691833.1 110832974 4213615 120938..121339 1 NC_008260.1 Predicted endonuclease involved in recombination, possible Holliday junction resolvase; Family membership; endonuclease, Holliday junction resolvase 121339 4213615 ABO_0113 Alcanivorax borkumensis SK2 endonuclease, Holliday junction resolvase YP_691833.1 120938 D 393595 CDS YP_691834.1 110832975 4213616 complement(121342..122319) 1 NC_008260.1 (conserved hypothetical protein) identified by match to PFAM protein family HMMPF04; sterol desaturase family protein; Family membership; sterol desaturase family protein 122319 4213616 ABO_0114 Alcanivorax borkumensis SK2 sterol desaturase family protein YP_691834.1 121342 R 393595 CDS YP_691835.1 110832976 4213617 122402..123412 1 NC_008260.1 transcriptional regulator AraC family identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; Family membership; transcriptional regulator 123412 4213617 ABO_0115 Alcanivorax borkumensis SK2 transcriptional regulator YP_691835.1 122402 D 393595 CDS YP_691836.1 110832977 4213618 complement(123444..124289) 1 NC_008260.1 esterase, , identified by match to PFAM protein family HMMPF00756 InterPro: esterase; Family membership; esterase 124289 4213618 ABO_0116 Alcanivorax borkumensis SK2 esterase YP_691836.1 123444 R 393595 CDS YP_691837.1 110832978 4211285 complement(124368..125477) 1 NC_008260.1 adhC; alcohol dehydrogenase class III, formaldehyde dehydrogenase hydroxyacid dehydrogenase family protein identified by match to TIGR protein family HMMTIGR01751 InterPro: Zinc-containing alcohol dehydrogenase superfamily; High confidence in function and specificity; alcohol dehydrogenase 125477 adhC 4211285 adhC Alcanivorax borkumensis SK2 alcohol dehydrogenase YP_691837.1 124368 R 393595 CDS YP_691838.1 110832979 4213619 125579..126451 1 NC_008260.1 transcriptional regulator LysR family identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family; Family membership; LysR family transcriptional regulator 126451 4213619 ABO_0118 Alcanivorax borkumensis SK2 LysR family transcriptional regulator YP_691838.1 125579 D 393595 CDS YP_691839.1 110832980 4212216 127079..127909 1 NC_008260.1 Family membership; haloacid dehalogenase 127909 dhlA 4212216 dhlA Alcanivorax borkumensis SK2 haloacid dehalogenase YP_691839.1 127079 D 393595 CDS YP_691840.1 110832981 4213405 127947..129416 1 NC_008260.1 catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 129416 amiC 4213405 amiC Alcanivorax borkumensis SK2 amidase YP_691840.1 127947 D 393595 CDS YP_691841.1 110832982 4213620 complement(129582..130286) 1 NC_008260.1 transcriptional regulator GntR family identified by match to PFAM protein family HMMPF00392 InterPro: Bacterial regulatory proteins GntR family; Specificity unclear; GntR family transcriptional regulator 130286 4213620 ABO_0121 Alcanivorax borkumensis SK2 GntR family transcriptional regulator YP_691841.1 129582 R 393595 CDS YP_691842.1 110832983 4213397 130408..131556 1 NC_008260.1 High confidence in function and specificity; alkane-1 monooxygenase 131556 alkB2 4213397 alkB2 Alcanivorax borkumensis SK2 alkane-1 monooxygenase YP_691842.1 130408 D 393595 CDS YP_691843.1 110832984 4213621 complement(131644..132744) 1 NC_008260.1 Family membership; fimbrial protein 132744 4213621 ABO_0123 Alcanivorax borkumensis SK2 fimbrial protein YP_691843.1 131644 R 393595 CDS YP_691844.1 110832985 4212477 complement(132741..133475) 1 NC_008260.1 identified by match to PFAM protein family HMMPF02753 and sequence similarity; Specificity unclear; type 1 pili chaperone protein FimC 133475 fimC 4212477 fimC Alcanivorax borkumensis SK2 type 1 pili chaperone protein FimC YP_691844.1 132741 R 393595 CDS YP_691845.1 110832986 4212478 complement(133451..135913) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00577 InterPro: Fimbrial biogenesis outer membrane usher protein; Specificity unclear; type 1 pili subunit FimD 135913 fimD 4212478 fimD Alcanivorax borkumensis SK2 type 1 pili subunit FimD YP_691845.1 133451 R 393595 CDS YP_691846.1 110832987 4212476 complement(135969..136514) 1 NC_008260.1 (Type-1 fimbrial protein, A chain precursor) identified by match to PFAM protein family HMMPF03797 and sequence similarity; High confidence in function and specificity; Type-1 fimbrial protein, A chain 136514 fimA 4212476 fimA Alcanivorax borkumensis SK2 Type-1 fimbrial protein, A chain YP_691846.1 135969 R 393595 CDS YP_691847.1 110832988 4211923 complement(136923..138374) 1 NC_008260.1 identified by match to PFAM protein family HMMPF03631 InterPro: Cation transport protein; Family membership; TrkH family potassium uptake protein 138374 trkH 4211923 trkH Alcanivorax borkumensis SK2 TrkH family potassium uptake protein YP_691847.1 136923 R 393595 CDS YP_691848.1 110832989 4211922 complement(138486..139862) 1 NC_008260.1 involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane protein 139862 trkA 4211922 trkA Alcanivorax borkumensis SK2 potassium transporter peripheral membrane protein YP_691848.1 138486 R 393595 CDS YP_691849.1 110832990 4211981 complement(139859..141202) 1 NC_008260.1 (sun) (sun protein, ) identified by match to PFAM protein family HMMPF01189 InterPro: Sun protein; Family membership; tRNA and rRNA cytosine-C5-methylase 141202 rsmB 4211981 rsmB Alcanivorax borkumensis SK2 tRNA and rRNA cytosine-C5-methylase YP_691849.1 139859 R 393595 CDS YP_691850.1 110832991 4212483 complement(141159..142151) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Methionyl-tRNA formyltransferase; High confidence in function and specificity; methionyl-tRNA formyltransferase 142151 fmt 4212483 fmt Alcanivorax borkumensis SK2 methionyl-tRNA formyltransferase YP_691850.1 141159 R 393595 CDS YP_691851.1 110832992 4212211 complement(142342..142848) 1 NC_008260.1 (polypeptide deformylase) identified by match to TIGR protein family HMMTIGR00079 InterPro: Formylmethionine deformylase; High confidence in function and specificity; peptide deformylase 142848 def-1 4212211 def-1 Alcanivorax borkumensis SK2 peptide deformylase YP_691851.1 142342 R 393595 CDS YP_691852.1 110832993 4213622 142994..144067 1 NC_008260.1 Region start changed from 142733 to 142994 (-261 bases); LysM domain-containing protein 144067 4213622 ABO_0132 Alcanivorax borkumensis SK2 LysM domain-containing protein YP_691852.1 142994 D 393595 CDS YP_691853.1 110832994 4211404 144141..145202 1 NC_008260.1 (peptide deformylase)(smf family protein; DNA processing protein, DprA, ) identified by sequence similarity; InterPro: SMF family; Family membership; peptide deformylase 145202 dprA 4211404 dprA Alcanivorax borkumensis SK2 peptide deformylase YP_691853.1 144141 D 393595 CDS YP_691854.1 110832995 4213623 145289..145837 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00057 InterPro: Sua5/YciO/YrdC/YwlC protein family; Family membership; Sua5/YciO/YrdC/YwlC family protein 145837 4213623 ABO_0134 Alcanivorax borkumensis SK2 Sua5/YciO/YrdC/YwlC family protein YP_691854.1 145289 D 393595 CDS YP_691855.1 110832996 4213624 145867..146775 1 NC_008260.1 catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 146775 4213624 ABO_0135 Alcanivorax borkumensis SK2 coproporphyrinogen III oxidase YP_691855.1 145867 D 393595 CDS YP_691856.1 110832997 4213487 146772..147608 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF01488 and TIGRFAM protein family HMMTIGR00507 InterPro: Shikimate / quinate 5-dehydrogenase; High confidence in function and specificity; shikimate 5-dehydrogenase 147608 aroE 4213487 aroE Alcanivorax borkumensis SK2 shikimate 5-dehydrogenase YP_691856.1 146772 D 393595 CDS YP_691857.1 110832998 4213625 147633..148061 1 NC_008260.1 (conserved hypothetical protein, Kef-type K+ transport systems, predicted NAD-binding component) identified by sequencesimilarity; InterPro: Potassium channel; Family membership; hypothetical protein 148061 4213625 ABO_0137 Alcanivorax borkumensis SK2 hypothetical protein YP_691857.1 147633 D 393595 CDS YP_691858.1 110832999 4213626 148125..149105 1 NC_008260.1 (Uncharacterized protein conserved in bacteria, COG3528); hypothetical protein 149105 4213626 ABO_0138 Alcanivorax borkumensis SK2 hypothetical protein YP_691858.1 148125 D 393595 CDS YP_691859.1 110833000 4213627 complement(149202..149741) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Bacterial transferase hexapeptide repeat; Family membership; anhydrase family 3 protein 149741 4213627 ABO_0139 Alcanivorax borkumensis SK2 anhydrase family 3 protein YP_691859.1 149202 R 393595 CDS YP_691860.1 110833001 4211217 149951..151984 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF01432 InterPro: Peptidase family M3; High confidence in function and specificity; oligopeptidase A 151984 prlC 4211217 prlC Alcanivorax borkumensis SK2 oligopeptidase A YP_691860.1 149951 D 393595 CDS YP_691861.1 110833002 4213198 152059..152259 1 NC_008260.1 hypothetical protein 152259 4213198 ABO_0141 Alcanivorax borkumensis SK2 hypothetical protein YP_691861.1 152059 D 393595 CDS YP_691862.1 110833003 4213199 152531..153235 1 NC_008260.1 hypothetical protein 153235 4213199 ABO_0142 Alcanivorax borkumensis SK2 hypothetical protein YP_691862.1 152531 D 393595 CDS YP_691863.1 110833004 4213200 complement(153339..154199) 1 NC_008260.1 Predicted metal-dependent hydrolase; identified by match to PFAM protein family HMMPF00892; hypothetical protein 154199 4213200 ABO_0143 Alcanivorax borkumensis SK2 hypothetical protein YP_691863.1 153339 R 393595 CDS YP_691864.1 110833005 4213201 154396..155370 1 NC_008260.1 transcriptional regulator, AraC family; Family membership; AraC family transcriptional regulator 155370 4213201 ABO_0144 Alcanivorax borkumensis SK2 AraC family transcriptional regulator YP_691864.1 154396 D 393595 CDS YP_691865.1 110833006 4212491 complement(155480..156256) 1 NC_008260.1 High confidence in function and specificity; ferredoxin-NADP reductase 156256 fpr 4212491 fpr Alcanivorax borkumensis SK2 ferredoxin-NADP reductase YP_691865.1 155480 R 393595 CDS YP_691866.1 110833007 4213202 156402..157292 1 NC_008260.1 identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family; Family membership; LysR family transcriptional regulator 157292 4213202 ABO_0146 Alcanivorax borkumensis SK2 LysR family transcriptional regulator YP_691866.1 156402 D 393595 CDS YP_691867.1 110833008 4212342 157488..158273 1 NC_008260.1 (cobalamin (5-phosphate) synthase) identified by sequence similarity; InterPro: Cobalamin-5-phosphate synthase CobS; High confidence in function and specificity; cobalamin 5'-phosphate synthase 158273 cobS 4212342 cobS Alcanivorax borkumensis SK2 cobalamin 5'-phosphate synthase YP_691867.1 157488 D 393595 CDS YP_691868.1 110833009 4213339 158544..159398 1 NC_008260.1 (enoyl-CoA hydratase/isomerase family protein, ) identified by match to PFAM protein family HMMPF00378 InterPro: Enoyl-CoA hydratase/isomerase; High confidence in function and specificity; enoyl-CoA hydratase 159398 ech1 4213339 ech1 Alcanivorax borkumensis SK2 enoyl-CoA hydratase YP_691868.1 158544 D 393595 CDS YP_691869.1 110833010 4213203 complement(159505..159921) 1 NC_008260.1 hypothetical protein 159921 4213203 ABO_0149 Alcanivorax borkumensis SK2 hypothetical protein YP_691869.1 159505 R 393595 CDS YP_691870.1 110833011 4213204 complement(159891..160814) 1 NC_008260.1 hypothetical protein 160814 4213204 ABO_0150 Alcanivorax borkumensis SK2 hypothetical protein YP_691870.1 159891 R 393595 CDS YP_691871.1 110833012 4213205 complement(160801..161352) 1 NC_008260.1 hypothetical protein 161352 4213205 ABO_0151 Alcanivorax borkumensis SK2 hypothetical protein YP_691871.1 160801 R 393595 CDS YP_691872.1 110833013 4213206 complement(161394..161603) 1 NC_008260.1 hypothetical protein 161603 4213206 ABO_0152 Alcanivorax borkumensis SK2 hypothetical protein YP_691872.1 161394 R 393595 CDS YP_691873.1 110833014 4213650 complement(161752..161958) 1 NC_008260.1 cold-shock domain family protein identified by sequence similarity; InterPro: Cold-shock DNA-binding domain; Family membership; cold-shock protein 161958 cspE 4213650 cspE Alcanivorax borkumensis SK2 cold-shock protein YP_691873.1 161752 R 393595 CDS YP_691874.1 110833015 4213207 complement(162514..163617) 1 NC_008260.1 hypothetical protein 163617 4213207 ABO_0154 Alcanivorax borkumensis SK2 hypothetical protein YP_691874.1 162514 R 393595 CDS YP_691875.1 110833016 4211579 complement(163920..164783) 1 NC_008260.1 Periplasmic solute binding protein.identified by sequence similarity; Conserved hypothetical protein; high-affinity zinc uptake system protein znuA 164783 znuA 4211579 znuA Alcanivorax borkumensis SK2 high-affinity zinc uptake system protein znuA YP_691875.1 163920 R 393595 CDS YP_691876.1 110833017 4211581 165022..165801 1 NC_008260.1 ABC-type Mn/Zn transport systems, ATPase component, ABC transporter related, ABC transporter, ABC_phnC: phosphonate ABC transporter, ATP-binding protein; High confidence in function and specificity; zinc transport protein ATPase 165801 znuC 4211581 znuC Alcanivorax borkumensis SK2 zinc transport protein ATPase YP_691876.1 165022 D 393595 CDS YP_691877.1 110833018 4211580 165728..166576 1 NC_008260.1 (zinc ABC transporter permease protein ZnuB) identified by match to PFAM protein family HMMPF01032 InterPro: ABC 3 transport family; Family membership; zinc ABC transporter permease 166576 znuB 4211580 znuB Alcanivorax borkumensis SK2 zinc ABC transporter permease YP_691877.1 165728 D 393595 CDS YP_691878.1 110833019 4213208 166768..168057 1 NC_008260.1 (MATE efflux family protein, ) identified by match to PFAM protein family HMMPF04235 InterPro: Uncharacterized domain UPF0013; Family membership; MATE efflux family protein 168057 4213208 ABO_0158 Alcanivorax borkumensis SK2 MATE efflux family protein YP_691878.1 166768 D 393595 CDS YP_691879.1 110833020 4213209 complement(168014..169180) 1 NC_008260.1 conserved hypotetical protein contains GGDEF domain; hypothetical protein 169180 4213209 ABO_0159 Alcanivorax borkumensis SK2 hypothetical protein YP_691879.1 168014 R 393595 CDS YP_691880.1 110833021 4213210 complement(169329..169988) 1 NC_008260.1 (Outer membrane lipoprotein LolB, ) identified by sequence similarity; Family membership; hypothetical protein 169988 4213210 ABO_0160 Alcanivorax borkumensis SK2 hypothetical protein YP_691880.1 169329 R 393595 CDS YP_691881.1 110833022 4213211 complement(170133..170570) 1 NC_008260.1 hypothetical protein 170570 4213211 ABO_0161 Alcanivorax borkumensis SK2 hypothetical protein YP_691881.1 170133 R 393595 CDS YP_691882.1 110833023 4212635 complement(170672..171820) 1 NC_008260.1 (NAD(FAD)-dependent dehydrogenases) identified by match to TIGR protein family HMMTIGR01508 InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Specificity unclear; rubredoxin reductase 171820 rubB 4212635 rubB Alcanivorax borkumensis SK2 rubredoxin reductase YP_691882.1 170672 R 393595 CDS YP_691883.1 110833024 4212634 complement(171870..172034) 1 NC_008260.1 (rubredoxin/rubredoxin reductase) identified by sequence similarity; InterPro: Rubredoxin-type Fe(Cys)4 protein Rubredoxin; High confidence in function and specificity; rubredoxin 172034 rubA 4212634 rubA Alcanivorax borkumensis SK2 rubredoxin YP_691883.1 171870 R 393595 CDS YP_691884.1 110833025 4211638 172271..172885 1 NC_008260.1 (chorismate lyase, ) identified by sequencesimilarity; Family membership; chorismate lyase 172885 pabA 4211638 pabA Alcanivorax borkumensis SK2 chorismate lyase YP_691884.1 172271 D 393595 CDS YP_691885.1 110833026 4211722 172968..173840 1 NC_008260.1 (UbiA prenyltransferase family, including 4-hydroxybenzoate polyprenyl transferase, 4-hydroxybenzoate-octaprenyl transferase and related prenyltransferases) identified by sequencesimilarity; InterPro: UbiA prenyltransferase; Family membership; UbiA prenyltransferase 173840 ubiA 4211722 ubiA Alcanivorax borkumensis SK2 UbiA prenyltransferase YP_691885.1 172968 D 393595 CDS YP_691886.1 110833027 4211606 174166..174870 1 NC_008260.1 (DNA-binding response regulator PhoB) identified by sequence similarity; High confidence in function and specificity; phosphate regulon transcriptional regulatory protein phoB 174870 phoB 4211606 phoB Alcanivorax borkumensis SK2 phosphate regulon transcriptional regulatory protein phoB YP_691886.1 174166 D 393595 CDS YP_691887.1 110833028 4211612 174960..176270 1 NC_008260.1 (sensory box histidine kinase PhoR) identified by sequence similarity; InterPro: Histidine kinase C-terminal; High confidence in function and specificity; phosphate regulon sensor protein PhoR 176270 phoR 4211612 phoR Alcanivorax borkumensis SK2 phosphate regulon sensor protein PhoR YP_691887.1 174960 D 393595 CDS YP_691888.1 110833029 4212028 complement(176457..178568) 1 NC_008260.1 identified by sequencesimilarity; InterPro: ATP-dependent DNA helicase RecG; High confidence in function and specificity; ATP-dependent DNA helicase RecG 178568 recG 4212028 recG Alcanivorax borkumensis SK2 ATP-dependent DNA helicase RecG YP_691888.1 176457 R 393595 CDS YP_691889.1 110833030 4211634 complement(178689..179630) 1 NC_008260.1 Hydrogen peroxide-inducible genes activator (Morphology and auto-aggregation control protein). (transcriptional regulator LysR family) identified by match to PFAM protein family HMMPF03466; High confidence in function and specificity; hydrogen peroxide-inducible gene activator OxyR 179630 oxyR 4211634 oxyR Alcanivorax borkumensis SK2 hydrogen peroxide-inducible gene activator OxyR YP_691889.1 178689 R 393595 CDS YP_691890.1 110833031 4213212 179729..180556 1 NC_008260.1 hypothetical protein 180556 4213212 ABO_0170 Alcanivorax borkumensis SK2 hypothetical protein YP_691890.1 179729 D 393595 CDS YP_691891.1 110833032 4211144 180933..181424 1 NC_008260.1 (phosphoribosylaminoimidazole carboxylase, catalytic subunit) identified by match to PFAM protein family HMMPF00731 InterPro: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; High confidence in function and specificity; phosphoribosylaminoimidazole carboxylase 181424 purE 4211144 purE Alcanivorax borkumensis SK2 phosphoribosylaminoimidazole carboxylase YP_691891.1 180933 D 393595 CDS YP_691892.1 110833033 4211147 181469..182575 1 NC_008260.1 (phosphoribosylaminoimidazole carboxylase ATPasesubunit) identified by match to TIGR protein family HMMTIGR01142 InterPro: ATP-grasp domain; High confidence in function and specificity; phosphoribosylaminoimidazole carboxylase 182575 purK 4211147 purK Alcanivorax borkumensis SK2 phosphoribosylaminoimidazole carboxylase YP_691892.1 181469 D 393595 CDS YP_691893.1 110833034 4213213 182652..183272 1 NC_008260.1 hypothetical protein 183272 4213213 ABO_0173 Alcanivorax borkumensis SK2 hypothetical protein YP_691893.1 182652 D 393595 CDS YP_691894.1 110833035 4213214 complement(183370..183606) 1 NC_008260.1 conserved hypothetical protein, Similar to pspto3478 from Pseudomonas syringae (pv. tomato); hypothetical protein 183606 4213214 ABO_0174 Alcanivorax borkumensis SK2 hypothetical protein YP_691894.1 183370 R 393595 CDS YP_691895.1 110833036 4213215 complement(183786..184172) 1 NC_008260.1 Endoribonuclease L-PSP identified by sequencesimilarity; InterPro: YER057c/YjgF/UK114 family; Family membership; endoribonuclease 184172 4213215 ABO_0175 Alcanivorax borkumensis SK2 endoribonuclease YP_691895.1 183786 R 393595 CDS YP_691896.1 110833037 4213216 complement(184492..186603) 1 NC_008260.1 (relA) (GTP pyrophosphokinase) identified by match to PFAM protein family HMMPF02824 InterPro: RelA/SpoT family protein; High confidence in function and specificity; GTP pyrophosphokinase 186603 4213216 ABO_0176 Alcanivorax borkumensis SK2 GTP pyrophosphokinase YP_691896.1 184492 R 393595 CDS YP_691897.1 110833038 4212370 complement(186855..187118) 1 NC_008260.1 (DNA-directed RNA polymerase, omega subunit) identified by sequence similarity; High confidence in function and specificity; DNA-directed RNA polymerase subunit omega 187118 rpoZ 4212370 rpoZ Alcanivorax borkumensis SK2 DNA-directed RNA polymerase subunit omega YP_691897.1 186855 R 393595 CDS YP_691898.1 110833039 4212772 complement(187269..187892) 1 NC_008260.1 identified by sequence similarity; InterPro: Guanylate kinase; High confidence in function and specificity; guanylate kinase 187892 gmk-2 4212772 gmk-2 Alcanivorax borkumensis SK2 guanylate kinase YP_691898.1 187269 R 393595 CDS YP_691899.1 110833040 4213000 187994..188983 1 NC_008260.1 predicted deacylase; hypothetical protein 188983 4213000 ABO_0179 Alcanivorax borkumensis SK2 hypothetical protein YP_691899.1 187994 D 393595 CDS YP_691900.1 110833041 4211353 189002..190687 1 NC_008260.1 catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 190687 ilvD-1 4211353 ilvD-1 Alcanivorax borkumensis SK2 dihydroxy-acid dehydratase YP_691900.1 189002 D 393595 CDS YP_691901.1 110833042 4213001 190870..191748 1 NC_008260.1 predicted metal-dependent hydrolase; hypothetical protein 191748 4213001 ABO_0181 Alcanivorax borkumensis SK2 hypothetical protein YP_691901.1 190870 D 393595 CDS YP_691902.1 110833043 4213002 191778..192758 1 NC_008260.1 hypothetical protein 192758 4213002 ABO_0182 Alcanivorax borkumensis SK2 hypothetical protein YP_691902.1 191778 D 393595 CDS YP_691903.1 110833044 4213003 192777..193712 1 NC_008260.1 hypothetical protein 193712 4213003 ABO_0183 Alcanivorax borkumensis SK2 hypothetical protein YP_691903.1 192777 D 393595 CDS YP_691904.1 110833045 4211859 193760..195310 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01734; High confidence in function and specificity; long-chain-fatty-acid-CoA ligase 195310 fadB 4211859 fadB Alcanivorax borkumensis SK2 long-chain-fatty-acid-CoA ligase YP_691904.1 193760 D 393595 CDS YP_691905.1 110833046 4211866 195349..196521 1 NC_008260.1 identified by match to PFAM protein family HMMPF02770 InterPro: Acyl-CoA dehydrogenase; Hypothetical protein; acyl-CoA dehydrogenase 196521 fadE-1 4211866 fadE-1 Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_691905.1 195349 D 393595 CDS YP_691906.1 110833047 4211867 196530..197645 1 NC_008260.1 identified by sequencesimilarity InterPro: Acyl-CoA dehydrogenase; High confidence in function and specificity; acyl-CoA dehydrogenase 197645 fadE-2 4211867 fadE-2 Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_691906.1 196530 D 393595 CDS YP_691907.1 110833048 4213004 197626..199245 1 NC_008260.1 oxidoreductase GMC family identified by sequencesimilarity; InterPro: Glucose-methanol-choline (GMC) oxidoreductase; Family membership; GMC family oxidoreductase 199245 4213004 ABO_0187 Alcanivorax borkumensis SK2 GMC family oxidoreductase YP_691907.1 197626 D 393595 CDS YP_691908.1 110833049 4213005 complement(200034..200918) 1 NC_008260.1 predicted metal-dependent hydrolase; Conserved hypothetical protein; metal hydrolase 200918 4213005 ABO_0188 Alcanivorax borkumensis SK2 metal hydrolase YP_691908.1 200034 R 393595 CDS YP_691909.1 110833050 4213006 complement(200959..201825) 1 NC_008260.1 oxidoreductase short chaindehydrogenase/reductase family identified by sequence similarity; InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; short chain dehydrogenase 201825 4213006 ABO_0189 Alcanivorax borkumensis SK2 short chain dehydrogenase YP_691909.1 200959 R 393595 CDS YP_691910.1 110833051 4213007 complement(201822..203348) 1 NC_008260.1 (monooxygenase flavin-binding family) identified by sequence similarity; InterPro: Flavin-containing monooxygenase (FMO); Family membership; monooxygenase 203348 4213007 ABO_0190 Alcanivorax borkumensis SK2 monooxygenase YP_691910.1 201822 R 393595 CDS YP_691911.1 110833052 4213008 complement(203345..204301) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Family membership; alpha/beta hydrolase 204301 4213008 ABO_0191 Alcanivorax borkumensis SK2 alpha/beta hydrolase YP_691911.1 203345 R 393595 CDS YP_691912.1 110833053 4213009 complement(205496..208585) 1 NC_008260.1 hypothetical protein 208585 4213009 ABO_0192 Alcanivorax borkumensis SK2 hypothetical protein YP_691912.1 205496 R 393595 CDS YP_691913.1 110833054 4213010 complement(208619..209983) 1 NC_008260.1 hypothetical protein 209983 4213010 ABO_0193 Alcanivorax borkumensis SK2 hypothetical protein YP_691913.1 208619 R 393595 CDS YP_691914.1 110833055 4213011 complement(210379..211977) 1 NC_008260.1 monooxygenase flavin-binding family (oxydoreductase with NADH or NADPH as one donor, and incorporation of one atom of oxygen) identified by sequence similarity; InterPro: Flavin-containing monooxygenase (FMO); Conserved hypothetical protein; monooxygenase 211977 4213011 ABO_0194 Alcanivorax borkumensis SK2 monooxygenase YP_691914.1 210379 R 393595 CDS YP_691915.1 110833056 4213020 complement(211974..212933) 1 NC_008260.1 (lipase/esterase family protein) identified by sequence similarity; InterPro: Esterase/lipase/thioesterase/carboxylesterase family active site; High confidence in function and specificity; lipase/esterase 212933 estB 4213020 estB Alcanivorax borkumensis SK2 lipase/esterase YP_691915.1 211974 R 393595 CDS YP_691916.1 110833057 4213012 complement(212972..213811) 1 NC_008260.1 oxidoreductase short chaindehydrogenase/reductase family identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Conserved hypothetical protein; short-chain dehydrogenase 213811 4213012 ABO_0196 Alcanivorax borkumensis SK2 short-chain dehydrogenase YP_691916.1 212972 R 393595 CDS YP_691917.1 110833058 4213013 complement(213808..214740) 1 NC_008260.1 predicted metal-dependent hydrolase; Conserved hypothetical protein; metal-dependent hydrolase 214740 4213013 ABO_0197 Alcanivorax borkumensis SK2 metal-dependent hydrolase YP_691917.1 213808 R 393595 CDS YP_691918.1 110833059 4213014 214922..215527 1 NC_008260.1 transcriptional regulator, TetR family; Family membership; TetR family transcriptional regulator 215527 4213014 ABO_0198 Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_691918.1 214922 D 393595 CDS YP_691919.1 110833060 4213015 complement(215704..216819) 1 NC_008260.1 transcriptional regulator, AraC family; Family membership; AraC family transcriptional regulator 216819 4213015 ABO_0199 Alcanivorax borkumensis SK2 AraC family transcriptional regulator YP_691919.1 215704 R 393595 CDS YP_691920.1 110833061 4211870 216875..217195 1 NC_008260.1 identified by sequencesimilarity; InterPro: Ferredoxin; Family membership; (2Fe-2S) ferredoxin 217195 fdx 4211870 fdx Alcanivorax borkumensis SK2 (2Fe-2S) ferredoxin YP_691920.1 216875 D 393595 CDS YP_691921.1 110833062 4211635 217210..218622 1 NC_008260.1 (oxidoreductase cytochrome p450 family protein) (acting on paired donors with incorporation of molecular oxygen) identified by sequencesimilarity; High confidence in function and specificity; cytochrome P450 family protein 218622 p450 4211635 p450 Alcanivorax borkumensis SK2 cytochrome P450 family protein YP_691921.1 217210 D 393595 CDS YP_691922.1 110833063 4213401 218643..220280 1 NC_008260.1 Alcohol dehydrogenase, GMC-oxidoreductase; FAD flavoprotein oxidoreductase; Choline dehydrogenase (CHD) (CDH); High confidence in function and specificity; alcohol dehydrogenase 220280 alkJ2 4213401 alkJ2 Alcanivorax borkumensis SK2 alcohol dehydrogenase YP_691922.1 218643 D 393595 CDS YP_691923.1 110833064 4213016 220424..221656 1 NC_008260.1 oxidoreductase, GB:L19299 SP:P41131 PID:304015GB:X59066 GB:X65460 GB:D28126 GB:D14710 SP:P25705PID:28938 PID:34468 PID:559317 and PID:559325;identified by sequence similarity; Family membership; FAD-dependent oxidoreductase 221656 4213016 ABO_0203 Alcanivorax borkumensis SK2 FAD-dependent oxidoreductase YP_691923.1 220424 D 393595 CDS YP_691924.1 110833065 4213017 222489..223181 1 NC_008260.1 hypothetical protein 223181 4213017 ABO_0204 Alcanivorax borkumensis SK2 hypothetical protein YP_691924.1 222489 D 393595 CDS YP_691925.1 110833066 4213018 complement(223379..224242) 1 NC_008260.1 hypothetical protein 224242 4213018 ABO_0205 Alcanivorax borkumensis SK2 hypothetical protein YP_691925.1 223379 R 393595 CDS YP_691926.1 110833067 4212173 224412..225128 1 NC_008260.1 identified by sequencesimilarity; InterPro: 3 exoribonuclease family; High confidence in function and specificity; ribonuclease PH 225128 rph 4212173 rph Alcanivorax borkumensis SK2 ribonuclease PH YP_691926.1 224412 D 393595 CDS YP_691927.1 110833068 4211640 225207..225875 1 NC_008260.1 involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 225875 pyrE 4211640 pyrE Alcanivorax borkumensis SK2 orotate phosphoribosyltransferase YP_691927.1 225207 D 393595 CDS YP_691928.1 110833069 4213019 225878..226510 1 NC_008260.1 hypothetical protein 226510 4213019 ABO_0208 Alcanivorax borkumensis SK2 hypothetical protein YP_691928.1 225878 D 393595 CDS YP_691929.1 110833070 4211831 complement(226609..227193) 1 NC_008260.1 FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 227193 slmA 4211831 slmA Alcanivorax borkumensis SK2 nucleoid occlusion protein YP_691929.1 226609 R 393595 CDS YP_691930.1 110833071 4213477 complement(227397..228296) 1 NC_008260.1 (acetylglutamate kinase, N-acetyl-L-glutamate-5-phosphotransferase) identified by sequence similarity; identified by match to TIGRFAM protein family HMMTIGR00761; InterPro: Acetylglutamate kinase; High confidence in function and specificity; acetylglutamate kinase 228296 argB 4213477 argB Alcanivorax borkumensis SK2 acetylglutamate kinase YP_691930.1 227397 R 393595 CDS YP_691931.1 110833072 4211327 complement(228475..230829) 1 NC_008260.1 identified by sequence similarity; InterPro: Phosphoglucomutase and phosphomannomutase family; High confidence in function and specificity; phosphoglucomutase/phosphomannomutase 230829 pgm 4211327 pgm Alcanivorax borkumensis SK2 phosphoglucomutase/phosphomannomutase YP_691931.1 228475 R 393595 CDS YP_691932.1 110833073 4213336 complement(230980..231432) 1 NC_008260.1 identifiedby sequence similarity; InterPro: dUTPase; Family membership; deoxyuridine 5-triphosphate nucleotidohydrolase 231432 dut 4213336 dut Alcanivorax borkumensis SK2 deoxyuridine 5-triphosphate nucleotidohydrolase YP_691932.1 230980 R 393595 CDS YP_691933.1 110833074 4212468 complement(231510..232709) 1 NC_008260.1 catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 232709 coaBC 4212468 coaBC Alcanivorax borkumensis SK2 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase YP_691933.1 231510 R 393595 CDS YP_691934.1 110833075 4211648 232968..233642 1 NC_008260.1 (DNA repair protein (family RadC)) identified by sequencesimilarity; InterPro: DNA repair protein radC family; High confidence in function and specificity; DNA repair protein RadC-like protein 233642 radC 4211648 radC Alcanivorax borkumensis SK2 DNA repair protein RadC-like protein YP_691934.1 232968 D 393595 CDS YP_691935.1 110833076 4212296 233902..234138 1 NC_008260.1 identified by sequencesimilarity; InterPro: Ribosomal protein L28; Function unclear; 50S ribosomal protein L28 234138 rpmB 4212296 rpmB Alcanivorax borkumensis SK2 50S ribosomal protein L28 YP_691935.1 233902 D 393595 CDS YP_691936.1 110833077 4212359 234161..234328 1 NC_008260.1 identified by sequencesimilarity; InterPro: Ribosomal protein L33; Function unclear; 50S ribosomal protein L33 234328 rpmG 4212359 rpmG Alcanivorax borkumensis SK2 50S ribosomal protein L33 YP_691936.1 234161 D 393595 CDS YP_691937.1 110833078 4213888 234902..235357 1 NC_008260.1 hypothetical protein 235357 4213888 ABO_0217 Alcanivorax borkumensis SK2 hypothetical protein YP_691937.1 234902 D 393595 CDS YP_691938.1 110833079 4213889 235444..236340 1 NC_008260.1 hypothetical protein 236340 4213889 ABO_0218 Alcanivorax borkumensis SK2 hypothetical protein YP_691938.1 235444 D 393595 CDS YP_691939.1 110833080 4213890 236330..237550 1 NC_008260.1 Bacterial type II and III secretion system protein family membership; type II secretion system protein 237550 4213890 ABO_0219 Alcanivorax borkumensis SK2 type II secretion system protein YP_691939.1 236330 D 393595 CDS YP_691940.1 110833081 4213891 237563..238762 1 NC_008260.1 hypothetical protein 238762 4213891 ABO_0220 Alcanivorax borkumensis SK2 hypothetical protein YP_691940.1 237563 D 393595 CDS YP_691941.1 110833082 4213892 238846..240018 1 NC_008260.1 Type II/IV secretion system protein family; Family membership; type II secretion system protein 240018 4213892 ABO_0221 Alcanivorax borkumensis SK2 type II secretion system protein YP_691941.1 238846 D 393595 CDS YP_691942.1 110833083 4213893 240138..240944 1 NC_008260.1 hypothetical protein 240944 4213893 ABO_0222 Alcanivorax borkumensis SK2 hypothetical protein YP_691942.1 240138 D 393595 CDS YP_691943.1 110833084 4213894 240937..241797 1 NC_008260.1 hypothetical protein 241797 4213894 ABO_0223 Alcanivorax borkumensis SK2 hypothetical protein YP_691943.1 240937 D 393595 CDS YP_691944.1 110833085 4213895 241819..242502 1 NC_008260.1 hypothetical protein 242502 4213895 ABO_0224 Alcanivorax borkumensis SK2 hypothetical protein YP_691944.1 241819 D 393595 CDS YP_691945.1 110833086 4213896 242499..242783 1 NC_008260.1 hypothetical protein 242783 4213896 ABO_0225 Alcanivorax borkumensis SK2 hypothetical protein YP_691945.1 242499 D 393595 CDS YP_691946.1 110833087 4213897 242876..244546 1 NC_008260.1 hypothetical protein 244546 4213897 ABO_0226 Alcanivorax borkumensis SK2 hypothetical protein YP_691946.1 242876 D 393595 CDS YP_691947.1 110833088 4213898 244612..244830 1 NC_008260.1 (transposase, ) identified by match to PFAM protein family HMMPF04218; High confidence in function and specificity; transposase 244830 4213898 ABO_0227 Alcanivorax borkumensis SK2 transposase YP_691947.1 244612 D 393595 CDS YP_691948.1 110833089 4213899 246133..246270 1 NC_008260.1 hypothetical protein 246270 4213899 ABO_0228 Alcanivorax borkumensis SK2 hypothetical protein YP_691948.1 246133 D 393595 CDS YP_691949.1 110833090 4213900 247037..247423 1 NC_008260.1 (gloxalase/bleomycin resistance family protein ) identified by sequence similarity; identified by match to PFAM protein family HMMPF00903 InterPro: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Family membership; glyoxalase/bleomycin resistance family protein 247423 4213900 ABO_0229 Alcanivorax borkumensis SK2 glyoxalase/bleomycin resistance family protein YP_691949.1 247037 D 393595 CDS YP_691950.1 110833091 4213901 247660..248313 1 NC_008260.1 glutathione S-transferase family protein identified by sequencesimilarity; InterPro: Glutathione S-transferase N terminus; Family membership; glutathione S-transferase 248313 4213901 ABO_0230 Alcanivorax borkumensis SK2 glutathione S-transferase YP_691950.1 247660 D 393595 CDS YP_691951.1 110833092 4213902 complement(248364..248753) 1 NC_008260.1 hypothetical protein 248753 4213902 ABO_0231 Alcanivorax borkumensis SK2 hypothetical protein YP_691951.1 248364 R 393595 CDS YP_691952.1 110833093 4212130 248908..250992 1 NC_008260.1 (choline/carnitine/betaine transporter familyprotein) identified by match to PFAM protein family HMMPF02028 InterPro: BCCT transporter; High confidence in function and specificity; choline-glycine betaine transporter 250992 betT 4212130 betT Alcanivorax borkumensis SK2 choline-glycine betaine transporter YP_691952.1 248908 D 393595 CDS YP_691953.1 110833094 4213903 complement(251126..251845) 1 NC_008260.1 hypothetical protein 251845 4213903 ABO_0233 Alcanivorax borkumensis SK2 hypothetical protein YP_691953.1 251126 R 393595 CDS YP_691954.1 110833095 4213904 complement(251823..252464) 1 NC_008260.1 OmpA family protein identified by match to PFAM protein family HMMPF00691; Function unclear; hypothetical protein 252464 4213904 ABO_0234 Alcanivorax borkumensis SK2 hypothetical protein YP_691954.1 251823 R 393595 CDS YP_691955.1 110833096 4213905 complement(252461..254707) 1 NC_008260.1 hypothetical protein 254707 4213905 ABO_0235 Alcanivorax borkumensis SK2 hypothetical protein YP_691955.1 252461 R 393595 CDS YP_691956.1 110833097 4213906 complement(254704..255591) 1 NC_008260.1 hypothetical protein 255591 4213906 ABO_0236 Alcanivorax borkumensis SK2 hypothetical protein YP_691956.1 254704 R 393595 CDS YP_691957.1 110833098 4213726 255802..256083 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 256083 4213726 ABO_0237 Alcanivorax borkumensis SK2 hypothetical protein YP_691957.1 255802 D 393595 CDS YP_691958.1 110833099 4211431 complement(256146..257375) 1 NC_008260.1 Specificity unclear; Na+/H+ antiporter 257375 nhaD 4211431 nhaD Alcanivorax borkumensis SK2 Na+/H+ antiporter YP_691958.1 256146 R 393595 CDS YP_691959.1 110833100 4213727 257639..258928 1 NC_008260.1 Function unclear; hypothetical protein 258928 4213727 ABO_0239 Alcanivorax borkumensis SK2 hypothetical protein YP_691959.1 257639 D 393595 CDS YP_691960.1 110833101 4213728 259094..260488 1 NC_008260.1 hypothetical protein 260488 4213728 ABO_0240 Alcanivorax borkumensis SK2 hypothetical protein YP_691960.1 259094 D 393595 CDS YP_691961.1 110833102 4213729 260514..261551 1 NC_008260.1 hypothetical protein 261551 4213729 ABO_0241 Alcanivorax borkumensis SK2 hypothetical protein YP_691961.1 260514 D 393595 CDS YP_691962.1 110833103 4213730 261618..262730 1 NC_008260.1 hypothetical protein 262730 4213730 ABO_0242 Alcanivorax borkumensis SK2 hypothetical protein YP_691962.1 261618 D 393595 CDS YP_691963.1 110833104 4213731 complement(262771..263163) 1 NC_008260.1 hypothetical protein 263163 4213731 ABO_0243 Alcanivorax borkumensis SK2 hypothetical protein YP_691963.1 262771 R 393595 CDS YP_691964.1 110833105 4213732 complement(263356..263772) 1 NC_008260.1 transcriptional regulator MerR family identified by match to PFAM protein family HMMPF00376 InterPro: Bacterial regulatory proteins MerR family; Function unclear; MerR family transcriptional regulator 263772 4213732 ABO_0244 Alcanivorax borkumensis SK2 MerR family transcriptional regulator YP_691964.1 263356 R 393595 CDS YP_691965.1 110833106 4213733 263935..264558 1 NC_008260.1 cobalt/cadmium/zinc transporter CDF family, identified by sequencesimilarity; InterPro: Cation efflux family; Family membership; CDF family cobalt/cadmium/zinc transporter 264558 4213733 ABO_0245 Alcanivorax borkumensis SK2 CDF family cobalt/cadmium/zinc transporter YP_691965.1 263935 D 393595 CDS YP_691966.1 110833107 4213734 264653..264877 1 NC_008260.1 hypothetical protein 264877 4213734 ABO_0246 Alcanivorax borkumensis SK2 hypothetical protein YP_691966.1 264653 D 393595 CDS YP_691967.1 110833108 4213735 264936..265616 1 NC_008260.1 hypothetical protein 265616 4213735 ABO_0247 Alcanivorax borkumensis SK2 hypothetical protein YP_691967.1 264936 D 393595 CDS YP_691968.1 110833109 4213736 265732..267018 1 NC_008260.1 ABC export system membrane fusion protein identified by sequencesimilarity; InterPro: HlyD family secretion protein; Function unclear; ABC transporter membrane protein 267018 4213736 ABO_0248 Alcanivorax borkumensis SK2 ABC transporter membrane protein YP_691968.1 265732 D 393595 CDS YP_691969.1 110833110 4213737 267018..268952 1 NC_008260.1 (ABC transporter, ATP-binding protein/permease, ) identified by match to TIGR protein family HMMTIGR01740; Family membership; ABC transporter ATP-binding protein/permease 268952 4213737 ABO_0249 Alcanivorax borkumensis SK2 ABC transporter ATP-binding protein/permease YP_691969.1 267018 D 393595 CDS YP_691970.1 110833111 4213738 268945..270330 1 NC_008260.1 outer membrane protein identified by sequence similarity; InterPro: Outer membrane efflux protein; Function unclear; ABC transporter outer membrane protein 270330 4213738 ABO_0250 Alcanivorax borkumensis SK2 ABC transporter outer membrane protein YP_691970.1 268945 D 393595 CDS YP_691971.1 110833112 4213739 270460..271332 1 NC_008260.1 deacetylase family protein identified by sequence similarity; InterPro: Histone deacetylase family; Family membership; deacetylase 271332 4213739 ABO_0251 Alcanivorax borkumensis SK2 deacetylase YP_691971.1 270460 D 393595 CDS YP_691972.1 110833113 4213740 271384..271764 1 NC_008260.1 hypothetical protein 271764 4213740 ABO_0252 Alcanivorax borkumensis SK2 hypothetical protein YP_691972.1 271384 D 393595 CDS YP_691973.1 110833114 4211855 271972..273138 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; acetyl-CoA acyltransferase 273138 fadA1 4211855 fadA1 Alcanivorax borkumensis SK2 acetyl-CoA acyltransferase YP_691973.1 271972 D 393595 CDS YP_691974.1 110833116 4213741 complement(273317..275473) 1 NC_008260.1 (ABC transporter ATP-binding protein, permease, ) identified by sequencesimilarity; InterPro: AAA ATPase superfamily; Family membership; ABC transporter ATP-binding protein/permease 275473 4213741 ABO_0254 Alcanivorax borkumensis SK2 ABC transporter ATP-binding protein/permease YP_691974.1 273317 R 393595 CDS YP_691975.1 110833115 4213742 275353..275829 1 NC_008260.1 hypothetical protein 275829 4213742 ABO_0255 Alcanivorax borkumensis SK2 hypothetical protein YP_691975.1 275353 D 393595 CDS YP_691976.1 110833117 4212133 275972..277246 1 NC_008260.1 aminotransferase class III identified by sequencesimilarity; InterPro: Aminotransferase class-III pyridoxal-phosphate; High confidence in function and specificity; 7,8-diaminononanoate transaminase 277246 bioA 4212133 bioA Alcanivorax borkumensis SK2 7,8-diaminononanoate transaminase YP_691976.1 275972 D 393595 CDS YP_691977.1 110833118 4213743 277868..278206 1 NC_008260.1 hypothetical protein 278206 4213743 ABO_0257 Alcanivorax borkumensis SK2 hypothetical protein YP_691977.1 277868 D 393595 CDS YP_691978.1 110833119 4212480 278229..278939 1 NC_008260.1 (fklB-2) (peptidyl-prolyl cis-trans isomerase FKBP-type) identified by sequencesimilarity; InterPro: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; Function unclear; peptidyl-prolyl isomerase 278939 fklB-1 4212480 fklB-1 Alcanivorax borkumensis SK2 peptidyl-prolyl isomerase YP_691978.1 278229 D 393595 CDS YP_691979.1 110833120 4213604 complement(279186..279686) 1 NC_008260.1 binds specifically to the major sigma factor sigma 70; active in stationary phase; anti-RNA polymerase sigma 70 factor 279686 algQ 4213604 algQ Alcanivorax borkumensis SK2 anti-RNA polymerase sigma 70 factor YP_691979.1 279186 R 393595 CDS YP_691980.1 110833121 4213744 complement(279977..280714) 1 NC_008260.1 membrane protein of LrgB-like family identified by sequencesimilarity; Function unclear; effector of murein hydrolase 280714 4213744 ABO_0260 Alcanivorax borkumensis SK2 effector of murein hydrolase YP_691980.1 279977 R 393595 CDS YP_691981.1 110833122 4213745 complement(280692..281075) 1 NC_008260.1 hypothetical protein 281075 4213745 ABO_0261 Alcanivorax borkumensis SK2 hypothetical protein YP_691981.1 280692 R 393595 CDS YP_691982.1 110833123 4211407 complement(281083..281586) 1 NC_008260.1 DsbB family protein identified by sequencesimilarity; InterPro: Disulfide bond formation protein DsbB; Specificity unclear; disulfide bond formation protein B 281586 dsbB 4211407 dsbB Alcanivorax borkumensis SK2 disulfide bond formation protein B YP_691982.1 281083 R 393595 CDS YP_691983.1 110833124 4212782 complement(282069..283646) 1 NC_008260.1 (glutamate-cysteine ligase) identified by sequence similarity; High confidence in function and specificity; glutamate--cysteine ligase 283646 gshA 4212782 gshA Alcanivorax borkumensis SK2 glutamate--cysteine ligase YP_691983.1 282069 R 393595 CDS YP_691984.1 110833125 4212746 complement(283751..286123) 1 NC_008260.1 S1 RNA binding domain protein identified by match to PFAM protein family HMMPF00575; Function unclear; S1 RNA-binding domain-containing protein 286123 4212746 ABO_0264 Alcanivorax borkumensis SK2 S1 RNA-binding domain-containing protein YP_691984.1 283751 R 393595 CDS YP_691985.1 110833126 4211376 complement(286306..286668) 1 NC_008260.1 (PilH; regulatory protein pilH family) identified by sequence similarity; InterPro: Response regulator receiver domain; Family membership; PilH family regulatory protein 286668 pilH 4211376 pilH Alcanivorax borkumensis SK2 PilH family regulatory protein YP_691985.1 286306 R 393595 CDS YP_691986.1 110833127 4212747 complement(286875..290486) 1 NC_008260.1 (cation multi-drug efflux pump, Transporter of the RND family of multidrug efflux pump, ) identified by match to PFAM protein family HMMPF04165 InterPro: Acriflavin resistance protein; Family membership; cation multi-drug efflux protein 290486 4212747 ABO_0266 Alcanivorax borkumensis SK2 cation multi-drug efflux protein YP_691986.1 286875 R 393595 CDS YP_691987.1 110833128 4212748 complement(290479..291843) 1 NC_008260.1 secreted protein; Function unclear; multidrug resistance protein 291843 4212748 ABO_0267 Alcanivorax borkumensis SK2 multidrug resistance protein YP_691987.1 290479 R 393595 CDS YP_691988.1 110833129 4211628 292026..292736 1 NC_008260.1 part of two-component system EnvZ/OmpR; regulates transcription of outer membrane porin genes ompC/F; under high osmolarity EnvZ functions as kinase/phosphotransferase and phosphorylates OmpR; the result is increased expression of ompC and repression of ompF; also functions in regulation of other genes; forms dimers upon phosphorylation; osmolarity response regulator 292736 ompR 4211628 ompR Alcanivorax borkumensis SK2 osmolarity response regulator YP_691988.1 292026 D 393595 CDS YP_691989.1 110833130 4213350 292830..294149 1 NC_008260.1 (ompB), (perA), (tpo). Osmolarity sensor protein EnvZ, protein histidine kinase/phosphatase sensor for OmpR, modulatesexpression of ompF and ompC) identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; High confidence in function and specificity; osmolarity sensor protein EnvZ 294149 envZ 4213350 envZ Alcanivorax borkumensis SK2 osmolarity sensor protein EnvZ YP_691989.1 292830 D 393595 CDS YP_691990.1 110833131 4212749 complement(294358..295563) 1 NC_008260.1 murein hydrolase B (hydrolysing O- and S-glycosyl compounds) identified by match to PFAM protein family HMMPF01471 InterPro: peptidoglycan binding domain 1; Specificity unclear; glycosidases 295563 4212749 ABO_0270 Alcanivorax borkumensis SK2 glycosidases YP_691990.1 294358 R 393595 CDS YP_691991.1 110833132 4212750 295758..296408 1 NC_008260.1 (trkA) identified by match to PFAM protein family HMMPF02080 InterPro: KTN NAD-binding domain; Family membership; potassium uptake protein TrkA 296408 4212750 ABO_0271 Alcanivorax borkumensis SK2 potassium uptake protein TrkA YP_691991.1 295758 D 393595 CDS YP_691992.1 110833133 4212751 296405..297766 1 NC_008260.1 potassium uptake protein TrkH family identified by match to PFAM protein family HMMPF04247 InterPro: Cation transport protein; Family membership; TrkH family potassium uptake protein 297766 4212751 ABO_0272 Alcanivorax borkumensis SK2 TrkH family potassium uptake protein YP_691992.1 296405 D 393595 CDS YP_691993.1 110833134 4211650 complement(297795..298724) 1 NC_008260.1 identified by match to PFAM protein family HMMPF03631 InterPro: Ribonuclease BN; Family membership; ribonuclease BN family protein 298724 rbn 4211650 rbn Alcanivorax borkumensis SK2 ribonuclease BN family protein YP_691993.1 297795 R 393595 CDS YP_691994.1 110833135 4211427 complement(298942..300234) 1 NC_008260.1 identified by sequence similarity; InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; High confidence in function and specificity; NADH dehydrogenase 300234 ndh 4211427 ndh Alcanivorax borkumensis SK2 NADH dehydrogenase YP_691994.1 298942 R 393595 CDS YP_691995.1 110833136 4212443 complement(300499..302043) 1 NC_008260.1 PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 302043 pckA 4212443 pckA Alcanivorax borkumensis SK2 phosphoenolpyruvate carboxykinase YP_691995.1 300499 R 393595 CDS YP_691996.1 110833137 4211490 complement(302403..303257) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01430 InterPro: Hsp33 protein; High confidence in function and specificity; chaperonin, 33 kDa 303257 hslO 4211490 hslO Alcanivorax borkumensis SK2 chaperonin, 33 kDa YP_691996.1 302403 R 393595 CDS YP_691997.1 110833138 4211491 complement(303309..303695) 1 NC_008260.1 (heat shock protein 15, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog)) identified by match to PFAM protein family HMMPF01479 InterPro: S4 domain; High confidence in function and specificity; heat shock protein 15 kDa 303695 hslR 4211491 hslR Alcanivorax borkumensis SK2 heat shock protein 15 kDa YP_691997.1 303309 R 393595 CDS YP_691998.1 110833139 4212752 complement(303717..304370) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00702 InterPro: Haloacid dehalogenase/epoxide hydrolase family; Family membership; HAD superfamily hydrolase 304370 4212752 ABO_0278 Alcanivorax borkumensis SK2 HAD superfamily hydrolase YP_691998.1 303717 R 393595 CDS YP_691999.1 110833140 4211676 304427..304972 1 NC_008260.1 ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 304972 nudE 4211676 nudE Alcanivorax borkumensis SK2 ADP-ribose diphosphatase NudE YP_691999.1 304427 D 393595 CDS YP_692000.1 110833141 4212581 305004..305825 1 NC_008260.1 (inositol monophosphatase family protein) identified by sequencesimilarity; InterPro: Inositol monophosphatase; High confidence in function and specificity; inositol 1-phosphatase 305825 cysQ 4212581 cysQ Alcanivorax borkumensis SK2 inositol 1-phosphatase YP_692000.1 305004 D 393595 CDS YP_692001.1 110833142 4212753 305911..306798 1 NC_008260.1 hypothetical protein 306798 4212753 ABO_0281 Alcanivorax borkumensis SK2 hypothetical protein YP_692001.1 305911 D 393595 CDS YP_692002.1 110833143 4212754 307384..308883 1 NC_008260.1 monooxygenase flavin-binding family identified by sequence similarity; InterPro: Flavin-containing monooxygenase (FMO); Family membership; monooxygenase flavin-binding family protein 308883 4212754 ABO_0282 Alcanivorax borkumensis SK2 monooxygenase flavin-binding family protein YP_692002.1 307384 D 393595 CDS YP_692003.1 110833144 4212755 complement(309077..310042) 1 NC_008260.1 hypothetical protein 310042 4212755 ABO_0283 Alcanivorax borkumensis SK2 hypothetical protein YP_692003.1 309077 R 393595 CDS YP_692004.1 110833145 4212756 complement(310198..310692) 1 NC_008260.1 hypothetical protein 310692 4212756 ABO_0284 Alcanivorax borkumensis SK2 hypothetical protein YP_692004.1 310198 R 393595 CDS YP_692005.1 110833146 4212757 complement(310747..311394) 1 NC_008260.1 transcriptional regulator TetR family identified by sequencesimilarity; InterPro: Bacterial regulatory proteins TetR family; Family membership; transcriptional regulator 311394 4212757 ABO_0285 Alcanivorax borkumensis SK2 transcriptional regulator YP_692005.1 310747 R 393595 CDS YP_692006.1 110833147 4212758 311482..312315 1 NC_008260.1 oxidoreductase (short chaindehydrogenase/reductase family) identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; oxidoreductase 312315 4212758 ABO_0286 Alcanivorax borkumensis SK2 oxidoreductase YP_692006.1 311482 D 393595 CDS YP_692007.1 110833148 4212759 312369..313295 1 NC_008260.1 hypothetical protein 313295 4212759 ABO_0287 Alcanivorax borkumensis SK2 hypothetical protein YP_692007.1 312369 D 393595 CDS YP_692008.1 110833149 4212760 313366..314919 1 NC_008260.1 monooxygenase flavin-binding family identified by sequence similarity; InterPro: Flavin-containing monooxygenase (FMO); Function unclear; monooxygenase 314919 4212760 ABO_0288 Alcanivorax borkumensis SK2 monooxygenase YP_692008.1 313366 D 393595 CDS YP_692009.1 110833150 4212761 315184..317094 1 NC_008260.1 hypothetical protein 317094 4212761 ABO_0289 Alcanivorax borkumensis SK2 hypothetical protein YP_692009.1 315184 D 393595 CDS YP_692010.1 110833151 4212762 complement(317186..317497) 1 NC_008260.1 hypothetical protein 317497 4212762 ABO_0290 Alcanivorax borkumensis SK2 hypothetical protein YP_692010.1 317186 R 393595 CDS YP_692011.1 110833152 4212763 complement(317609..319282) 1 NC_008260.1 ABC transporter ATP-binding protein identified by sequencesimilarity; InterPro: AAA ATPase superfamily belongs to the abc transporter family. ef3 subfamily; Specificity unclear; ABC transporter ATP-binding protein 319282 4212763 ABO_0291 Alcanivorax borkumensis SK2 ABC transporter ATP-binding protein YP_692011.1 317609 R 393595 CDS YP_692012.1 110833153 4212764 319391..320188 1 NC_008260.1 hypothetical protein 320188 4212764 ABO_0292 Alcanivorax borkumensis SK2 hypothetical protein YP_692012.1 319391 D 393595 CDS YP_692013.1 110833154 4212726 320221..320676 1 NC_008260.1 (conserved hypothetical protein ); hypothetical protein 320676 4212726 ABO_0293 Alcanivorax borkumensis SK2 hypothetical protein YP_692013.1 320221 D 393595 CDS YP_692014.1 110833155 4212187 320763..321788 1 NC_008260.1 protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 321788 hemH 4212187 hemH Alcanivorax borkumensis SK2 ferrochelatase YP_692014.1 320763 D 393595 CDS YP_692015.1 110833156 4212727 321972..322631 1 NC_008260.1 hypothetical protein 322631 4212727 ABO_0295 Alcanivorax borkumensis SK2 hypothetical protein YP_692015.1 321972 D 393595 CDS YP_692016.1 110833157 4211343 complement(322684..323700) 1 NC_008260.1 catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase 323700 icd 4211343 icd Alcanivorax borkumensis SK2 isocitrate dehydrogenase YP_692016.1 322684 R 393595 CDS YP_692017.1 110833158 4212728 324130..325128 1 NC_008260.1 (ABC transporter ATP-binding protein, ) identified by match to PFAM protein family HMMPF00005 InterPro: AAA ATPase superfamily; Family membership; ABC transporter ATP-binding protein 325128 4212728 ABO_0297 Alcanivorax borkumensis SK2 ABC transporter ATP-binding protein YP_692017.1 324130 D 393595 CDS YP_692018.1 110833159 4212729 325125..325886 1 NC_008260.1 (ATP-binding cassette (ABC) transporters, permease protein, ) identified by match to PFAM protein family HMMPF04306 InterPro: ABC 2 transport system integral membrane protein; High confidence in function and specificity; ABC transporter permease 325886 4212729 ABO_0298 Alcanivorax borkumensis SK2 ABC transporter permease YP_692018.1 325125 D 393595 CDS YP_692019.1 110833160 4212730 325950..326897 1 NC_008260.1 predicted membrane protein; hypothetical protein 326897 4212730 ABO_0299 Alcanivorax borkumensis SK2 hypothetical protein YP_692019.1 325950 D 393595 CDS YP_692020.1 110833161 4212731 complement(327151..328380) 1 NC_008260.1 hypothetical protein 328380 4212731 ABO_0300 Alcanivorax borkumensis SK2 hypothetical protein YP_692020.1 327151 R 393595 CDS YP_692021.1 110833162 4212732 complement(328635..329075) 1 NC_008260.1 hypothetical protein 329075 4212732 ABO_0301 Alcanivorax borkumensis SK2 hypothetical protein YP_692021.1 328635 R 393595 CDS YP_692022.1 110833163 4212450 329293..329922 1 NC_008260.1 identified by sequencesimilarity; InterPro: Pyridoxamine 5-phosphate oxidase; High confidence in function and specificity; pyridoxamine-phosphate oxidase 329922 pdxH 4212450 pdxH Alcanivorax borkumensis SK2 pyridoxamine-phosphate oxidase YP_692022.1 329293 D 393595 CDS YP_692023.1 110833164 4212733 complement(330883..332382) 1 NC_008260.1 hypothetical protein 332382 4212733 ABO_0303 Alcanivorax borkumensis SK2 hypothetical protein YP_692023.1 330883 R 393595 CDS YP_692024.1 110833165 4212734 333169..333453 1 NC_008260.1 hypothetical protein 333453 4212734 ABO_0304 Alcanivorax borkumensis SK2 hypothetical protein YP_692024.1 333169 D 393595 CDS YP_692025.1 110833166 4213637 complement(333505..334005) 1 NC_008260.1 binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 334005 smpB 4213637 smpB Alcanivorax borkumensis SK2 SsrA-binding protein YP_692025.1 333505 R 393595 CDS YP_692026.1 110833167 4212735 334154..335740 1 NC_008260.1 Na+-dependent transporters of the SNF family similar pst:PSPTO4514; Family membership; SNF family Na(+)-dependent transporter 335740 4212735 ABO_0306 Alcanivorax borkumensis SK2 SNF family Na(+)-dependent transporter YP_692026.1 334154 D 393595 CDS YP_692027.1 110833168 4212736 335737..336051 1 NC_008260.1 hypothetical protein 336051 4212736 ABO_0307 Alcanivorax borkumensis SK2 hypothetical protein YP_692027.1 335737 D 393595 CDS YP_692028.1 110833169 4211625 complement(336080..336487) 1 NC_008260.1 identified by sequencesimilarity; Specificity unclear; outer membrane lipoprotein OmlA 336487 omlA 4211625 omlA Alcanivorax borkumensis SK2 outer membrane lipoprotein OmlA YP_692028.1 336080 R 393595 CDS YP_692029.1 110833170 4211564 336676..337077 1 NC_008260.1 identified by sequence similarity; Family membership; transcriptional regulator Fur 337077 fur 4211564 fur Alcanivorax borkumensis SK2 transcriptional regulator Fur YP_692029.1 336676 D 393595 CDS YP_692030.1 110833171 4212030 complement(337136..338818) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00634 InterPro: DNA repair protein RecN; High confidence in function and specificity; DNA repair protein RecN 338818 recN 4212030 recN Alcanivorax borkumensis SK2 DNA repair protein RecN YP_692030.1 337136 R 393595 CDS YP_692031.1 110833172 4212737 complement(338834..339361) 1 NC_008260.1 hypothetical protein 339361 4212737 ABO_0311 Alcanivorax borkumensis SK2 hypothetical protein YP_692031.1 338834 R 393595 CDS YP_692032.1 110833173 4211484 339630..340559 1 NC_008260.1 Heat-inducible transcription repressor hrcA homolog InterPro: Negative regulator of class I heat shock protein; High confidence in function and specificity; heat-inducible transcription repressor hrcA 340559 hrcA 4211484 hrcA Alcanivorax borkumensis SK2 heat-inducible transcription repressor hrcA YP_692032.1 339630 D 393595 CDS YP_692033.1 110833174 4212781 340810..341382 1 NC_008260.1 identified by match to PFAM protein family HMMPF01025 InterPro: GrpE protein; High confidence in function and specificity; heat shock protein GrpE 341382 grpE 4212781 grpE Alcanivorax borkumensis SK2 heat shock protein GrpE YP_692033.1 340810 D 393595 CDS YP_692034.1 110833175 4211400 341602..343527 1 NC_008260.1 (dnaK protein), (Chaperone protein dnaK), (Heat shock protein 70) identified by sequencesimilarity; InterPro: Heat shock protein hsp70; High confidence in function and specificity; molecular chaperone DnaK 343527 dnaK 4211400 dnaK Alcanivorax borkumensis SK2 molecular chaperone DnaK YP_692034.1 341602 D 393595 CDS YP_692035.1 110833176 4211399 343629..344759 1 NC_008260.1 (dnaJ protein), (Chaperone protein dnaJ), identified by sequencesimilarity; InterPro: DnaJ C terminal domain; High confidence in function and specificity; molecular chaperone DnaJ 344759 dnaJ 4211399 dnaJ Alcanivorax borkumensis SK2 molecular chaperone DnaJ YP_692035.1 343629 D 393595 CDS YP_692036.1 110833177 4213287 345007..345834 1 NC_008260.1 identified by sequence similarity; identified by match to TIGRFAM protein family HMMTIGR00036 InterPro: Dihydrodipicolinate reductase; High confidence in function and specificity; dihydrodipicolinate reductase 345834 dapB 4213287 dapB Alcanivorax borkumensis SK2 dihydrodipicolinate reductase YP_692036.1 345007 D 393595 CDS YP_692037.1 110833178 4212144 346031..347155 1 NC_008260.1 catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 347155 carA 4212144 carA Alcanivorax borkumensis SK2 carbamoyl phosphate synthase small subunit YP_692037.1 346031 D 393595 CDS YP_692038.1 110833179 4212145 347225..350443 1 NC_008260.1 four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 350443 carB 4212145 carB Alcanivorax borkumensis SK2 carbamoyl phosphate synthase large subunit YP_692038.1 347225 D 393595 CDS YP_692039.1 110833180 4212779 350499..351011 1 NC_008260.1 identified by sequencesimilarity; Specificity unclear; transcription elongation factor GreA 351011 greA 4212779 greA Alcanivorax borkumensis SK2 transcription elongation factor GreA YP_692039.1 350499 D 393595 CDS YP_692040.1 110833181 4212738 complement(351114..351428) 1 NC_008260.1 conserved hypothetical protein TIGR00253 identified by sequence similarity; InterPro: Uncharacterized protein family UPF0044; hypothetical protein 351428 4212738 ABO_0320 Alcanivorax borkumensis SK2 hypothetical protein YP_692040.1 351114 R 393595 CDS YP_692041.1 110833182 4212570 351548..352174 1 NC_008260.1 identified by sequencesimilarity; InterPro: FtsJ cell division protein; Specificity unclear; ribosomal RNA large subunit methyltransferase J 352174 rrmJ 4212570 rrmJ Alcanivorax borkumensis SK2 ribosomal RNA large subunit methyltransferase J YP_692041.1 351548 D 393595 CDS YP_692042.1 110833183 4211554 352289..354205 1 NC_008260.1 identified by sequence similarity; InterPro: Peptidase family M41; Specificity unclear; cell division protein FtsH 354205 ftsH 4211554 ftsH Alcanivorax borkumensis SK2 cell division protein FtsH YP_692042.1 352289 D 393595 CDS YP_692043.1 110833184 4212489 354212..355075 1 NC_008260.1 identified by sequence similarity; InterPro: Dihydropteroate synthase; High confidence in function and specificity; dihydropteroate synthase 355075 folP 4212489 folP Alcanivorax borkumensis SK2 dihydropteroate synthase YP_692043.1 354212 D 393595 CDS YP_692044.1 110833185 4211180 355072..356406 1 NC_008260.1 identified by sequence similarity; InterPro: Phosphoglucomutase and phosphomannomutase family; High confidence in function and specificity; phosphoglucosamine mutase 356406 glmM 4211180 glmM Alcanivorax borkumensis SK2 phosphoglucosamine mutase YP_692044.1 355072 D 393595 CDS YP_692045.1 110833186 4211921 356487..357230 1 NC_008260.1 Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 357230 tpiA 4211921 tpiA Alcanivorax borkumensis SK2 triosephosphate isomerase YP_692045.1 356487 D 393595 CDS YP_692046.1 110833187 4212739 357242..357685 1 NC_008260.1 Family membership; protein-export membrane protein 357685 4212739 ABO_0326 Alcanivorax borkumensis SK2 protein-export membrane protein YP_692046.1 357242 D 393595 CDS YP_692047.1 110833188 4212740 358171..358716 1 NC_008260.1 hypothetical protein 358716 4212740 ABO_0327 Alcanivorax borkumensis SK2 hypothetical protein YP_692047.1 358171 D 393595 CDS YP_692048.1 110833189 4211678 358688..360265 1 NC_008260.1 identified by sequence similarity. InterPro: S1 RNA binding domain; High confidence in function and specificity; transcription elongation factor 360265 nusA 4211678 nusA Alcanivorax borkumensis SK2 transcription elongation factor YP_692048.1 358688 D 393595 CDS YP_692049.1 110833190 4211202 360327..363023 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; translation initiation factor IF-2 363023 infB 4211202 infB Alcanivorax borkumensis SK2 translation initiation factor IF-2 YP_692049.1 360327 D 393595 CDS YP_692050.1 110833191 4211649 363048..363461 1 NC_008260.1 identified by sequencesimilarity; InterPro: Ribosome-binding factor A; High confidence in function and specificity; ribosome-binding factor A 363461 rbfA 4211649 rbfA Alcanivorax borkumensis SK2 ribosome-binding factor A YP_692050.1 363048 D 393595 CDS YP_692051.1 110833192 4211825 363476..364402 1 NC_008260.1 ABC efflux transporter permease/ATP-bindingprotein identified by sequence similarity; InterPro: tRNA pseudouridine synthase B; High confidence in function and specificity; pseudouridylate synthase 364402 truB 4211825 truB Alcanivorax borkumensis SK2 pseudouridylate synthase YP_692051.1 363476 D 393595 CDS YP_692052.1 110833193 4212560 364483..364752 1 NC_008260.1 primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 364752 rpsO 4212560 rpsO Alcanivorax borkumensis SK2 30S ribosomal protein S15 YP_692052.1 364483 D 393595 CDS YP_692053.1 110833194 4212265 364958..367051 1 NC_008260.1 identified by sequence similarity; InterPro: 3 exoribonuclease family; High confidence in function and specificity; polynucleotide phosphorylase 367051 pnp 4212265 pnp Alcanivorax borkumensis SK2 polynucleotide phosphorylase YP_692053.1 364958 D 393595 CDS YP_692054.1 110833195 4211279 complement(367545..369482) 1 NC_008260.1 identified by sequence similarity; InterPro: AMP-dependent synthetase and ligase; High confidence in function and specificity; acetyl-CoA synthetase 369482 acsA 4211279 acsA Alcanivorax borkumensis SK2 acetyl-CoA synthetase YP_692054.1 367545 R 393595 CDS YP_692055.1 110833196 4212437 complement(369808..370188) 1 NC_008260.1 Converts L-aspartate to beta-alanine and provides the major route of beta-alanine production in bacteria. Beta-alanine is essential for the biosynthesis of pantothenate (vitamin B5); aspartate alpha-decarboxylase 370188 panD 4212437 panD Alcanivorax borkumensis SK2 aspartate alpha-decarboxylase YP_692055.1 369808 R 393595 CDS YP_692056.1 110833197 4212436 complement(370279..371136) 1 NC_008260.1 (pantoate--beta-alanine ligase) identified by sequencesimilarity; InterPro: Pantoate-beta-alanine ligase; High confidence in function and specificity; pantothenate synthetase 371136 panC 4212436 panC Alcanivorax borkumensis SK2 pantothenate synthetase YP_692056.1 370279 R 393595 CDS YP_692057.1 110833198 4212435 complement(371285..372073) 1 NC_008260.1 identified by sequence similarity; InterPro: Ketopantoate hydroxymethyltransferase; High confidence in function and specificity; 3-methyl-2-oxobutanoate hydroxymethyltransferase 372073 panB 4212435 panB Alcanivorax borkumensis SK2 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_692057.1 371285 R 393595 CDS YP_692058.1 110833199 4212741 complement(372252..372953) 1 NC_008260.1 identified by sequence similarity; InterPro: Deoxynucleoside kinase; Family membership; deoxynucleoside kinase 372953 4212741 ABO_0338 Alcanivorax borkumensis SK2 deoxynucleoside kinase YP_692058.1 372252 R 393595 CDS YP_692059.1 110833200 4212488 complement(372937..373440) 1 NC_008260.1 (2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase) identified by sequencesimilarity; InterPro: 78-Dihydro-6-hydroxymethylpterin-pyrophosphokinase; High confidence in function and specificity; 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 373440 folK-1 4212488 folK-1 Alcanivorax borkumensis SK2 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase YP_692059.1 372937 R 393595 CDS YP_692060.1 110833201 4212445 complement(373440..374819) 1 NC_008260.1 identified by sequence similarity; InterPro: Poly A polymerase family; High confidence in function and specificity; poly(A) polymerase 374819 pcnB 4212445 pcnB Alcanivorax borkumensis SK2 poly(A) polymerase YP_692060.1 373440 R 393595 CDS YP_692061.1 110833202 4211339 complement(375407..376735) 1 NC_008260.1 ) identified by match to PFAM protein family HMMPF00072 InterPro: Sigma-54 factor interaction domain; High confidence in function and specificity; nitrogen regulation protein NR(I) 376735 hydG 4211339 hydG Alcanivorax borkumensis SK2 nitrogen regulation protein NR(I) YP_692061.1 375407 R 393595 CDS YP_692062.1 110833203 4212742 complement(376772..379720) 1 NC_008260.1 (sensory box histidine kinase ) identified by match to PFAM protein family HMMPF02518; InterPro: Sodium:solute symporter family; Family membership; sensory box histidine kinase 379720 4212742 ABO_0342 Alcanivorax borkumensis SK2 sensory box histidine kinase YP_692062.1 376772 R 393595 CDS YP_692063.1 110833204 4212743 complement(379704..379880) 1 NC_008260.1 identified by Glimmer2; hypothetical protein 379880 4212743 ABO_0343 Alcanivorax borkumensis SK2 hypothetical protein YP_692063.1 379704 R 393595 CDS YP_692064.1 110833205 4212766 complement(380028..380942) 1 NC_008260.1 Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase) (GluRS)., Glutamyl-tRNA synthetase, class Ic, tRNA synthetases class I (E and Q), catalytic domain, gltX_bact: glutamyl-tRNA synthetase; High confidence in function and specificity; glutamyl-tRNA synthetase 380942 gltX 4212766 gltX Alcanivorax borkumensis SK2 glutamyl-tRNA synthetase YP_692064.1 380028 R 393595 CDS YP_692065.1 110833206 4212221 complement(381076..382053) 1 NC_008260.1 (C4-type zinc finger protein DksA/TraR family) identified by match to PFAM protein family HMMPF01258; High confidence in function and specificity; hypothetical protein 382053 dksA 4212221 dksA Alcanivorax borkumensis SK2 hypothetical protein YP_692065.1 381076 R 393595 CDS YP_692066.1 110833207 4212744 382373..383542 1 NC_008260.1 (aminotransferase, ) identified by match to PFAM protein family HMMPF00155, Family membership; aminotransferase 383542 4212744 ABO_0346 Alcanivorax borkumensis SK2 aminotransferase YP_692066.1 382373 D 393595 CDS YP_692067.1 110833208 4213633 383539..384258 1 NC_008260.1 (sugar fermentation stimulation protein); High confidence in function and specificity; sugar fermentation stimulation protein 384258 sfsA 4213633 sfsA Alcanivorax borkumensis SK2 sugar fermentation stimulation protein YP_692067.1 383539 D 393595 CDS YP_692068.1 110833209 4212745 complement(384361..385326) 1 NC_008260.1 catalyzes the phosphorylation of protein substrates at serine and threonine residues in vitro; specific substrate in vivo has not been identified yet; plays a role in long-term cell survival and expression of surface appendages; serine/threonine protein kinase 385326 4212745 ABO_0348 Alcanivorax borkumensis SK2 serine/threonine protein kinase YP_692068.1 384361 R 393595 CDS YP_692069.1 110833210 4212902 complement(385407..385739) 1 NC_008260.1 (Rieske 2Fe-2S family protein) identified by match to PFAM protein family HMMPF00355 InterPro: Rieske iron-sulfur protein 2Fe-2S subunit; Function unclear; Rieske 2Fe-2S family protein 385739 4212902 ABO_0349 Alcanivorax borkumensis SK2 Rieske 2Fe-2S family protein YP_692069.1 385407 R 393595 CDS YP_692070.1 110833211 4211324 complement(385842..386846) 1 NC_008260.1 (carbohydrate kinase, PfkB family) identified by sequencesimilarity; High confidence in function and specificity; carbohydrate kinase 386846 pfkB 4211324 pfkB Alcanivorax borkumensis SK2 carbohydrate kinase YP_692070.1 385842 R 393595 CDS YP_692071.1 110833212 4211365 386950..389340 1 NC_008260.1 unknown EC_number 2.4.2.129; (penicillin-binding protein 1B (PBP-1b) (PBP1b) (Murein polymerase)[Includes: Penicillin-insensitive transglycosylase (EC 2.4.1.129)(Peptidoglycan glycosyltransferase) (Peptidoglycan TGase); Penicillin-sensitive transpeptidase (EC 3.4.-.-) (DD-transpeptidase)]) identified by sequencesimilarity; InterPro: Penicillin binding protein transpeptidase domain; Function unclear; penicillin-binding protein 389340 mrcB 4211365 mrcB Alcanivorax borkumensis SK2 penicillin-binding protein YP_692071.1 386950 D 393595 CDS YP_692072.1 110833213 4212903 389467..389928 1 NC_008260.1 hypothetical protein 389928 4212903 ABO_0352 Alcanivorax borkumensis SK2 hypothetical protein YP_692072.1 389467 D 393595 CDS YP_692073.1 110833214 4211786 389925..390392 1 NC_008260.1 conserved hypothetical protein TIGR00011 identified by sequence similarity; Function unclear; protein ybaK 390392 ybaK 4211786 ybaK Alcanivorax borkumensis SK2 protein ybaK YP_692073.1 389925 D 393595 CDS YP_692074.1 110833215 4212189 complement(390577..391857) 1 NC_008260.1 (glutamate-1-semialdehyde-21-aminomutase) identified by sequencesimilarity; InterPro: Glutamate-1-semialdehyde-21-aminomutase; High confidence in function and specificity; glutamate-1-semialdehyde 2,1-aminomutase 391857 hemL 4212189 hemL Alcanivorax borkumensis SK2 glutamate-1-semialdehyde 2,1-aminomutase YP_692074.1 390577 R 393595 CDS YP_692075.1 110833216 4211937 complement(391882..392592) 1 NC_008260.1 (thiamine-phosphate pyrophosphorylase) identified by sequencesimilarity; InterPro: Thiamine monophosphate synthase (TMP); High confidence in function and specificity; thiamine-phosphate diphosphorylase 392592 thiE 4211937 thiE Alcanivorax borkumensis SK2 thiamine-phosphate diphosphorylase YP_692075.1 391882 R 393595 CDS YP_692076.1 110833217 4211936 complement(392543..393304) 1 NC_008260.1 (phosphomethylpyrimidine kinase) identified by sequencesimilarity; High confidence in function and specificity; adenine phosphoribosyltransferase 393304 thiD 4211936 thiD Alcanivorax borkumensis SK2 adenine phosphoribosyltransferase YP_692076.1 392543 R 393595 CDS YP_692077.1 110833218 4212904 complement(393384..393827) 1 NC_008260.1 hypothetical protein 393827 4212904 ABO_0357 Alcanivorax borkumensis SK2 hypothetical protein YP_692077.1 393384 R 393595 CDS YP_692078.1 110833219 4212905 393943..395373 1 NC_008260.1 identified by match to PFAM protein family HMMPF00654 InterPro: Voltage gated chloride channels; Specificity unclear; voltage-gated chloride channel family protein 395373 4212905 ABO_0358 Alcanivorax borkumensis SK2 voltage-gated chloride channel family protein YP_692078.1 393943 D 393595 CDS YP_692079.1 110833220 4213478 395479..396549 1 NC_008260.1 identified by sequencesimilarity; InterPro: N-acetyl-gamma-glutamyl-phosphate reductase active site; High confidence in function and specificity; N-acetyl-gamma-glutamyl-phosphate reductase 396549 argC 4213478 argC Alcanivorax borkumensis SK2 N-acetyl-gamma-glutamyl-phosphate reductase YP_692079.1 395479 D 393595 CDS YP_692080.1 110833221 4212906 396552..397280 1 NC_008260.1 hypothetical protein 397280 4212906 ABO_0360 Alcanivorax borkumensis SK2 hypothetical protein YP_692080.1 396552 D 393595 CDS YP_692081.1 110833222 4212907 397290..397781 1 NC_008260.1 conserved hypothetical protein identified by sequencesimilarity; Function unclear; hypothetical protein 397781 4212907 ABO_0361 Alcanivorax borkumensis SK2 hypothetical protein YP_692081.1 397290 D 393595 CDS YP_692082.1 110833223 4211783 397765..398217 1 NC_008260.1 HesB/YadR/YfhF family protein identified by sequencesimilarity; InterPro: Hypothetical hesB/yadR/yfhF family; Family membership; HesB/YadR/YfhF family protein 398217 yadR 4211783 yadR Alcanivorax borkumensis SK2 HesB/YadR/YfhF family protein YP_692082.1 397765 D 393595 CDS YP_692083.1 110833224 4212908 398482..399015 1 NC_008260.1 hypothetical protein 399015 4212908 ABO_0363 Alcanivorax borkumensis SK2 hypothetical protein YP_692083.1 398482 D 393595 CDS YP_692084.1 110833225 4212909 complement(399103..400206) 1 NC_008260.1 catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 400206 anmK 4212909 anmK Alcanivorax borkumensis SK2 anhydro-N-acetylmuramic acid kinase YP_692084.1 399103 R 393595 CDS YP_692085.1 110833226 4212910 complement(400196..401515) 1 NC_008260.1 peptidase M23/M37 family identified by match to PFAM protein family HMMPF04225; Family membership; M24/M37 family peptidase 401515 4212910 ABO_0365 Alcanivorax borkumensis SK2 M24/M37 family peptidase YP_692085.1 400196 R 393595 CDS YP_692086.1 110833227 4211720 401672..402871 1 NC_008260.1 (tyrosyl-tRNA synthetase) identified by sequence similarity; InterPro: Tyrosyl-tRNA synthetase; High confidence in function and specificity; tyrosine-tRNA ligase 402871 tyrS 4211720 tyrS Alcanivorax borkumensis SK2 tyrosine-tRNA ligase YP_692086.1 401672 D 393595 CDS YP_692087.1 110833228 4211863 409218..410900 1 NC_008260.1 (long-chain fatty-acid-CoA ligase ) identified by match to TIGR protein family HMMTIGR01734 InterPro: AMP-dependent synthetase and ligase; High confidence in function and specificity; long-fatty-acid-CoA ligase 410900 fadD 4211863 fadD Alcanivorax borkumensis SK2 long-fatty-acid-CoA ligase YP_692087.1 409218 D 393595 CDS YP_692088.1 110833229 4212139 410888..411868 1 NC_008260.1 (birA bifunctional protein) identified by sequence similarity; InterPro: Biotin--acetyl-CoA-carboxylase ligase; Specificity unclear; biotin-[acetyl-CoA-carboxylase] ligase 411868 birA 4212139 birA Alcanivorax borkumensis SK2 biotin-[acetyl-CoA-carboxylase] ligase YP_692088.1 410888 D 393595 CDS YP_692089.1 110833230 4212911 411865..412602 1 NC_008260.1 transcriptional activator identified by match to PFAM protein family HMMPF03309; Family membership; transcriptional activator 412602 4212911 ABO_0369 Alcanivorax borkumensis SK2 transcriptional activator YP_692089.1 411865 D 393595 CDS YP_692090.1 110833231 4212912 412620..413267 1 NC_008260.1 hypothetical protein 413267 4212912 ABO_0370 Alcanivorax borkumensis SK2 hypothetical protein YP_692090.1 412620 D 393595 CDS YP_692091.1 110833232 4211833 414014..415204 1 NC_008260.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 415204 tuf-1 4211833 tuf-1 Alcanivorax borkumensis SK2 elongation factor Tu YP_692091.1 414014 D 393595 CDS YP_692092.1 110833233 4212647 415378..415764 1 NC_008260.1 identified by sequence similarity; InterPro: Protein secE/sec61-gamma protein; Family membership; preprotein translocase subunit SecE 415764 secE 4212647 secE Alcanivorax borkumensis SK2 preprotein translocase subunit SecE YP_692092.1 415378 D 393595 CDS YP_692093.1 110833234 4211621 415774..416316 1 NC_008260.1 identified by match to PFAM protein family HMMPF02357; High confidence in function and specificity; transcription antitermination protein NusG 416316 nusG 4211621 nusG Alcanivorax borkumensis SK2 transcription antitermination protein NusG YP_692093.1 415774 D 393595 CDS YP_692094.1 110833235 4212183 416432..416860 1 NC_008260.1 binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 416860 rplK 4212183 rplK Alcanivorax borkumensis SK2 50S ribosomal protein L11 YP_692094.1 416432 D 393595 CDS YP_692095.1 110833236 4212175 416864..417559 1 NC_008260.1 (ribosomal protein L1) identified by sequence similarity; InterPro: Ribosomal protein L1; High confidence in function and specificity; 50S ribosomal protein L1 417559 rplA 4212175 rplA Alcanivorax borkumensis SK2 50S ribosomal protein L1 YP_692095.1 416864 D 393595 CDS YP_692096.1 110833237 4212182 417866..418396 1 NC_008260.1 (ribosomal protein L10) identified by sequencesimilarity; InterPro: Ribosomal protein L10; High confidence in function and specificity; 50S ribosomal protein L10 418396 rplJ 4212182 rplJ Alcanivorax borkumensis SK2 50S ribosomal protein L10 YP_692096.1 417866 D 393595 CDS YP_692097.1 110833238 4212281 418461..418838 1 NC_008260.1 present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 418838 rplL 4212281 rplL Alcanivorax borkumensis SK2 50S ribosomal protein L7/L12 YP_692097.1 418461 D 393595 CDS YP_692098.1 110833239 4212364 418985..423127 1 NC_008260.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 423127 rpoB 4212364 rpoB Alcanivorax borkumensis SK2 DNA-directed RNA polymerase subunit beta YP_692098.1 418985 D 393595 CDS YP_692099.1 110833240 4212365 423222..427424 1 NC_008260.1 DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 427424 rpoC 4212365 rpoC Alcanivorax borkumensis SK2 DNA-directed RNA polymerase subunit beta' YP_692099.1 423222 D 393595 CDS YP_692100.1 110833241 4212557 427642..428013 1 NC_008260.1 interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 428013 rpsL 4212557 rpsL Alcanivorax borkumensis SK2 30S ribosomal protein S12 YP_692100.1 427642 D 393595 CDS YP_692101.1 110833242 4212377 428147..428617 1 NC_008260.1 binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 428617 rpsG 4212377 rpsG Alcanivorax borkumensis SK2 30S ribosomal protein S7 YP_692101.1 428147 D 393595 CDS YP_692102.1 110833243 4211565 428696..430795 1 NC_008260.1 (fus), (far) (translation elongation factor G), (elongation factor G) identified by sequencesimilarity; InterPro: Translation elongation factor G; High confidence in function and specificity; elongation factor (EF) 430795 fusA 4211565 fusA Alcanivorax borkumensis SK2 elongation factor (EF) YP_692102.1 428696 D 393595 CDS YP_692103.1 110833244 4211832 430828..432018 1 NC_008260.1 EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 432018 tuf 4211832 tuf Alcanivorax borkumensis SK2 elongation factor Tu YP_692103.1 430828 D 393595 CDS YP_692104.1 110833245 4213593 432756..434069 1 NC_008260.1 identified by sequence similarity; InterPro: UDP-glucose/GDP-mannose dehydrogenase family; High confidence in function and specificity; GDP-mannose 6-dehydrogenase 434069 algD 4213593 algD Alcanivorax borkumensis SK2 GDP-mannose 6-dehydrogenase YP_692104.1 432756 D 393595 CDS YP_692105.1 110833246 4213590 434075..435541 1 NC_008260.1 Function unclear; alginate biosynthesis protein Alg8 435541 alg8 4213590 alg8 Alcanivorax borkumensis SK2 alginate biosynthesis protein Alg8 YP_692105.1 434075 D 393595 CDS YP_692106.1 110833247 4213589 435590..436726 1 NC_008260.1 Function unclear; alginate biosynthesis protein Alg44 436726 alg44 4213589 alg44 Alcanivorax borkumensis SK2 alginate biosynthesis protein Alg44 YP_692106.1 435590 D 393595 CDS YP_692107.1 110833248 4213600 436762..438054 1 NC_008260.1 (alginate biosynthesis regulator AlgK) identified by sequence similarity; InterPro: TPR repeat; High confidence in function and specificity; alginate biosynthesis regulator 438054 algK 4213600 algK Alcanivorax borkumensis SK2 alginate biosynthesis regulator YP_692107.1 436762 D 393595 CDS YP_692108.1 110833249 4213594 438035..439417 1 NC_008260.1 (outer membrane protein AlgE); High confidence in function and specificity; outer membrane alginate export protein 439417 algE 4213594 algE Alcanivorax borkumensis SK2 outer membrane alginate export protein YP_692108.1 438035 D 393595 CDS YP_692109.1 110833250 4213598 439420..440838 1 NC_008260.1 High confidence in function and specificity; alginate o-acetyltransferase AlgI 440838 algI 4213598 algI Alcanivorax borkumensis SK2 alginate o-acetyltransferase AlgI YP_692109.1 439420 D 393595 CDS YP_692110.1 110833251 4213599 440851..441990 1 NC_008260.1 High confidence in function and specificity; alginate O-acetylation protein AlgJ 441990 algJ 4213599 algJ Alcanivorax borkumensis SK2 alginate O-acetylation protein AlgJ YP_692110.1 440851 D 393595 CDS YP_692111.1 110833252 4213595 441923..442552 1 NC_008260.1 High confidence in function and specificity; alginate O-acetyltransferase 442552 algF 4213595 algF Alcanivorax borkumensis SK2 alginate O-acetyltransferase YP_692111.1 441923 D 393595 CDS YP_692112.1 110833253 4213394 442530..443996 1 NC_008260.1 identified by sequencesimilarity; Function unclear; alginate biosynthesis protein AlgX 443996 algX 4213394 algX Alcanivorax borkumensis SK2 alginate biosynthesis protein AlgX YP_692112.1 442530 D 393595 CDS YP_692113.1 110833254 4213601 444011..445054 1 NC_008260.1 Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond: may enhance the production of alginate by controlling the length of the polymer chain during export; poly(beta-D-mannuronate) lyase 445054 algL 4213601 algL Alcanivorax borkumensis SK2 poly(beta-D-mannuronate) lyase YP_692113.1 444011 D 393595 CDS YP_692114.1 110833255 4213596 complement(445011..446306) 1 NC_008260.1 alginate-C5-mannuronan-epimerase AlgG, ); identified by sequence similarity; Family membership; poly(beta-D-mannuronate) C5 epimerase 446306 algG 4213596 algG Alcanivorax borkumensis SK2 poly(beta-D-mannuronate) C5 epimerase YP_692114.1 445011 R 393595 CDS YP_692115.1 110833256 4213591 complement(446677..448110) 1 NC_008260.1 (mannose-1-phosphateguanylyltransferase/mannose-6-p hosphate isomerase) identified by match to PFAM protein family HMMPF00483 InterPro: ADP-glucose pyrophosphorylase; High confidence in function and specificity; mannose-6-phosphate isomerase 448110 algA 4213591 algA Alcanivorax borkumensis SK2 mannose-6-phosphate isomerase YP_692115.1 446677 R 393595 CDS YP_692116.1 110833257 4212555 448511..448822 1 NC_008260.1 (ribosomal protein S10) identified by sequence similarity; InterPro: Ribosomal protein S10; High confidence in function and specificity; 30S ribosomal protein S10 448822 rpsJ 4212555 rpsJ Alcanivorax borkumensis SK2 30S ribosomal protein S10 YP_692116.1 448511 D 393595 CDS YP_692117.1 110833258 4212177 448865..449500 1 NC_008260.1 binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 449500 rplC 4212177 rplC Alcanivorax borkumensis SK2 50S ribosomal protein L3 YP_692117.1 448865 D 393595 CDS YP_692118.1 110833259 4212178 449515..450117 1 NC_008260.1 (ribosomal protein L4) identified by sequence similarity; InterPro: Ribosomal protein L4/L1e; High confidence in function and specificity; 50S ribosomal protein L4 450117 rplD 4212178 rplD Alcanivorax borkumensis SK2 50S ribosomal protein L4 YP_692118.1 449515 D 393595 CDS YP_692119.1 110833260 4212292 450114..450410 1 NC_008260.1 (ribosomal protein L23) identified by sequencesimilarity; InterPro: Ribosomal L23 protein; High confidence in function and specificity; 50S ribosomal protein L23 450410 rplW 4212292 rplW Alcanivorax borkumensis SK2 50S ribosomal protein L23 YP_692119.1 450114 D 393595 CDS YP_692120.1 110833261 4212176 450429..451253 1 NC_008260.1 one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 451253 rplB 4212176 rplB Alcanivorax borkumensis SK2 50S ribosomal protein L2 YP_692120.1 450429 D 393595 CDS YP_692121.1 110833262 4212564 451276..451551 1 NC_008260.1 (ribosomal protein S19) identified by sequencesimilarity; InterPro: Ribosomal protein S19; High confidence in function and specificity; 30S ribosomal protein S19 451551 rpsS 4212564 rpsS Alcanivorax borkumensis SK2 30S ribosomal protein S19 YP_692121.1 451276 D 393595 CDS YP_692122.1 110833263 4212291 451562..451906 1 NC_008260.1 (ribosomal protein L22) identified by match to PFAM protein family HMMPF00237; High confidence in function and specificity; 50S ribosomal protein L22 451906 rplV 4212291 rplV Alcanivorax borkumensis SK2 50S ribosomal protein L22 YP_692122.1 451562 D 393595 CDS YP_692123.1 110833264 4212373 451911..452603 1 NC_008260.1 (ribosomal protein S3) identified by sequencesimilarity; InterPro: Ribosomal protein S3; High confidence in function and specificity; 30S ribosomal protein S3 452603 rpsC 4212373 rpsC Alcanivorax borkumensis SK2 30S ribosomal protein S3 YP_692123.1 451911 D 393595 CDS YP_692124.1 110833265 4212285 452617..453030 1 NC_008260.1 located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 453030 rplP 4212285 rplP Alcanivorax borkumensis SK2 50S ribosomal protein L16 YP_692124.1 452617 D 393595 CDS YP_692125.1 110833266 4212297 453034..453225 1 NC_008260.1 identified by sequence similarity; InterPro: Ribosomal protein L29; High confidence in function and specificity; 50S ribosomal protein L29 453225 rpmC 4212297 rpmC Alcanivorax borkumensis SK2 50S ribosomal protein L29 YP_692125.1 453034 D 393595 CDS YP_692126.1 110833267 4212562 453228..453491 1 NC_008260.1 (ribosomal protein S17) identified by sequencesimilarity; InterPro: Ribosomal protein S17; High confidence in function and specificity; 30S ribosomal protein S17 453491 rpsQ 4212562 rpsQ Alcanivorax borkumensis SK2 30S ribosomal protein S17 YP_692126.1 453228 D 393595 CDS YP_692127.1 110833268 4212283 453543..453911 1 NC_008260.1 binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 453911 rplN 4212283 rplN Alcanivorax borkumensis SK2 50S ribosomal protein L14 YP_692127.1 453543 D 393595 CDS YP_692128.1 110833269 4212293 453927..454235 1 NC_008260.1 (ribosomal protein L24) identified by sequencesimilarity; InterPro: Ribosomal protein L24; High confidence in function and specificity; 50S ribosomal protein L24 454235 rplX 4212293 rplX Alcanivorax borkumensis SK2 50S ribosomal protein L24 YP_692128.1 453927 D 393595 CDS YP_692129.1 110833270 4212179 454248..454787 1 NC_008260.1 part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 454787 rplE 4212179 rplE Alcanivorax borkumensis SK2 50S ribosomal protein L5 YP_692129.1 454248 D 393595 CDS YP_692130.1 110833271 4212559 454799..455104 1 NC_008260.1 (ribosomal protein S14) identified by sequencesimilarity; InterPro: Ribosomal protein S14; High confidence in function and specificity; 30S ribosomal protein S14 455104 rpsN 4212559 rpsN Alcanivorax borkumensis SK2 30S ribosomal protein S14 YP_692130.1 454799 D 393595 CDS YP_692131.1 110833272 4212553 455140..455532 1 NC_008260.1 (ribosomal protein S8) identified by sequencesimilarity; InterPro: Ribosomal protein S8; High confidence in function and specificity; 30S ribosomal protein S8 455532 rpsH 4212553 rpsH Alcanivorax borkumensis SK2 30S ribosomal protein S8 YP_692131.1 455140 D 393595 CDS YP_692132.1 110833273 4212180 455564..456097 1 NC_008260.1 ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 456097 rplF 4212180 rplF Alcanivorax borkumensis SK2 50S ribosomal protein L6 YP_692132.1 455564 D 393595 CDS YP_692133.1 110833274 4212287 456115..456465 1 NC_008260.1 (ribosomal protein L18) identified by sequence similarity; InterPro: Ribosomal protein L18P/L5E; High confidence in function and specificity; 50S ribosomal protein L18 456465 rplR 4212287 rplR Alcanivorax borkumensis SK2 50S ribosomal protein L18 YP_692133.1 456115 D 393595 CDS YP_692134.1 110833275 4212375 456472..456975 1 NC_008260.1 (ribosomal protein S5) identified by sequencesimilarity; InterPro: Ribosomal protein S5; High confidence in function and specificity; 30S ribosomal protein S5 456975 rpsE 4212375 rpsE Alcanivorax borkumensis SK2 30S ribosomal protein S5 YP_692134.1 456472 D 393595 CDS YP_692135.1 110833276 4212298 457000..457182 1 NC_008260.1 identified by sequencesimilarity; InterPro: Ribosomal protein L30; High confidence in function and specificity; 50S ribosomal protein L30 457182 rpmD 4212298 rpmD Alcanivorax borkumensis SK2 50S ribosomal protein L30 YP_692135.1 457000 D 393595 CDS YP_692136.1 110833277 4212284 457186..457620 1 NC_008260.1 (ribosomal protein L15) identified by sequence similarity; InterPro: Ribosomal protein L15; High confidence in function and specificity; 50S ribosomal protein L15 457620 rplO 4212284 rplO Alcanivorax borkumensis SK2 50S ribosomal protein L15 YP_692136.1 457186 D 393595 CDS YP_692137.1 110833278 4213628 457632..459014 1 NC_008260.1 (Sec-dependent secretion protein SecY) identified by sequence similarity; InterPro: SecY protein; High confidence in function and specificity; preprotein translocase subunit SecY 459014 secY 4213628 secY Alcanivorax borkumensis SK2 preprotein translocase subunit SecY YP_692137.1 457632 D 393595 CDS YP_692138.1 110833279 4212362 459032..459148 1 NC_008260.1 smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 459148 rpmJ 4212362 rpmJ Alcanivorax borkumensis SK2 50S ribosomal protein L36 YP_692138.1 459032 D 393595 CDS YP_692139.1 110833280 4212558 459266..459622 1 NC_008260.1 located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 459622 rpsM 4212558 rpsM Alcanivorax borkumensis SK2 30S ribosomal protein S13 YP_692139.1 459266 D 393595 CDS YP_692140.1 110833281 4212556 459659..460057 1 NC_008260.1 located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 460057 rpsK 4212556 rpsK Alcanivorax borkumensis SK2 30S ribosomal protein S11 YP_692140.1 459659 D 393595 CDS YP_692141.1 110833282 4212374 460074..460706 1 NC_008260.1 (ribosomal protein S4) identified by sequence similarity; InterPro: Ribosomal protein S4; High confidence in function and specificity; 30S ribosomal protein S4 460706 rpsD 4212374 rpsD Alcanivorax borkumensis SK2 30S ribosomal protein S4 YP_692141.1 460074 D 393595 CDS YP_692142.1 110833283 4212363 460727..461734 1 NC_008260.1 catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 461734 rpoA 4212363 rpoA Alcanivorax borkumensis SK2 DNA-directed RNA polymerase subunit alpha YP_692142.1 460727 D 393595 CDS YP_692143.1 110833284 4212286 461784..462167 1 NC_008260.1 identified by match to PFAM protein family HMMPF01196 InterPro: Ribosomal protein L17; High confidence in function and specificity; 50S ribosomal protein L17 462167 rplQ 4212286 rplQ Alcanivorax borkumensis SK2 50S ribosomal protein L17 YP_692143.1 461784 D 393595 CDS YP_692144.1 110833285 4212913 462272..462607 1 NC_008260.1 hypothetical protein 462607 4212913 ABO_0424 Alcanivorax borkumensis SK2 hypothetical protein YP_692144.1 462272 D 393595 CDS YP_692145.1 110833286 4212914 complement(462617..463030) 1 NC_008260.1 hypothetical protein 463030 4212914 ABO_0425 Alcanivorax borkumensis SK2 hypothetical protein YP_692145.1 462617 R 393595 CDS YP_692146.1 110833287 4212915 complement(463118..464443) 1 NC_008260.1 Function unclear; glycerophosphoryl diester phosphodiesterase 464443 4212915 ABO_0426 Alcanivorax borkumensis SK2 glycerophosphoryl diester phosphodiesterase YP_692146.1 463118 R 393595 CDS YP_692147.1 110833288 4211953 complement(464651..467473) 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; excinuclease ABC subunit A 467473 uvrA 4211953 uvrA Alcanivorax borkumensis SK2 excinuclease ABC subunit A YP_692147.1 464651 R 393595 CDS YP_692148.1 110833289 4212916 complement(467603..468253) 1 NC_008260.1 DNA-binding response regulator LuxR family identified by match to PFAM protein family HMMPF00072 InterPro: Bacterial regulatory protein LuxR family; Family membership; LuxR family transcriptional regulator 468253 4212916 ABO_0428 Alcanivorax borkumensis SK2 LuxR family transcriptional regulator YP_692148.1 467603 R 393595 CDS YP_692149.1 110833290 4212917 468520..469887 1 NC_008260.1 major facilitator family transporter identified by match to PFAM protein family HMMPF03605 InterPro: General substrate transporters; Family membership; major facilitator family transporter 469887 4212917 ABO_0429 Alcanivorax borkumensis SK2 major facilitator family transporter YP_692149.1 468520 D 393595 CDS YP_692150.1 110833291 4213645 469977..470495 1 NC_008260.1 identified by sequencesimilarity; InterPro: Single-strand binding protein family; High confidence in function and specificity; single-stranded DNA-binding protein 470495 ssb 4213645 ssb Alcanivorax borkumensis SK2 single-stranded DNA-binding protein YP_692150.1 469977 D 393595 CDS YP_692151.1 110833292 4212918 470522..471250 1 NC_008260.1 hypothetical protein 471250 4212918 ABO_0431 Alcanivorax borkumensis SK2 hypothetical protein YP_692151.1 470522 D 393595 CDS YP_692152.1 110833293 4212919 471336..472196 1 NC_008260.1 hypothetical protein 472196 4212919 ABO_0432 Alcanivorax borkumensis SK2 hypothetical protein YP_692152.1 471336 D 393595 CDS YP_692153.1 110833294 4212920 472196..474328 1 NC_008260.1 (xcpQ) (type II secretion pathway protein XcpQ) identified by sequence similarity; InterPro: General (type II) secretion pathway (GSP) D protein; Function unclear; general (type II) secretion pathway protein D 474328 4212920 ABO_0433 Alcanivorax borkumensis SK2 general (type II) secretion pathway protein D YP_692153.1 472196 D 393595 CDS YP_692154.1 110833295 4213099 complement(474485..475510) 1 NC_008260.1 hypothetical protein 475510 4213099 ABO_0434 Alcanivorax borkumensis SK2 hypothetical protein YP_692154.1 474485 R 393595 CDS YP_692155.1 110833296 4213100 complement(475488..476849) 1 NC_008260.1 adenylate cyclase family protein identified by Glimmer2; InterPro: Guanylate cyclase; Specificity unclear; hypothetical protein 476849 4213100 ABO_0435 Alcanivorax borkumensis SK2 hypothetical protein YP_692155.1 475488 R 393595 CDS YP_692156.1 110833297 4213101 477193..478164 1 NC_008260.1 hydrolase alpha/beta fold family identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Family membership; alpha/beta hydrolase 478164 4213101 ABO_0436 Alcanivorax borkumensis SK2 alpha/beta hydrolase YP_692156.1 477193 D 393595 CDS YP_692157.1 110833298 4213102 478145..478636 1 NC_008260.1 hypothetical protein 478636 4213102 ABO_0437 Alcanivorax borkumensis SK2 hypothetical protein YP_692157.1 478145 D 393595 CDS YP_692158.1 110833299 4213103 478942..479625 1 NC_008260.1 nitrobenzoate reductase identified by sequencesimilarity; InterPro: Nitroreductase family; High confidence in function and specificity; oxidoreductase 479625 4213103 ABO_0438 Alcanivorax borkumensis SK2 oxidoreductase YP_692158.1 478942 D 393595 CDS YP_692159.1 110833300 4213104 479728..480090 1 NC_008260.1 hypothetical protein 480090 4213104 ABO_0439 Alcanivorax borkumensis SK2 hypothetical protein YP_692159.1 479728 D 393595 CDS YP_692160.1 110833301 4213105 480283..481212 1 NC_008260.1 ATPase AAA family identified by match to PFAM protein family HMMPF00004 InterPro: AAA-protein (ATPases associated with various cellular activities); Specificity unclear; ATPase AAA 481212 4213105 ABO_0440 Alcanivorax borkumensis SK2 ATPase AAA YP_692160.1 480283 D 393595 CDS YP_692161.1 110833302 4213106 481212..482573 1 NC_008260.1 hypothetical protein 482573 4213106 ABO_0441 Alcanivorax borkumensis SK2 hypothetical protein YP_692161.1 481212 D 393595 CDS YP_692162.1 110833303 4213107 complement(482593..485034) 1 NC_008260.1 sensor histidine kinase identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Function unclear; sensor histidine kinase 485034 4213107 ABO_0442 Alcanivorax borkumensis SK2 sensor histidine kinase YP_692162.1 482593 R 393595 CDS YP_692163.1 110833304 4213108 485171..485722 1 NC_008260.1 Hypothetical protein; hypothetical protein 485722 4213108 ABO_0443 Alcanivorax borkumensis SK2 hypothetical protein YP_692163.1 485171 D 393595 CDS YP_692164.1 110833305 4213109 complement(485834..487162) 1 NC_008260.1 hypothetical protein 487162 4213109 ABO_0444 Alcanivorax borkumensis SK2 hypothetical protein YP_692164.1 485834 R 393595 CDS YP_692165.1 110833306 4213110 complement(487392..487820) 1 NC_008260.1 Hypothetical protein; hypothetical protein 487820 4213110 ABO_0445 Alcanivorax borkumensis SK2 hypothetical protein YP_692165.1 487392 R 393595 CDS YP_692166.1 110833307 4213111 488507..489523 1 NC_008260.1 transcriptional regulator AraC family identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; Family membership; AraC family transcriptional regulator 489523 4213111 ABO_0446 Alcanivorax borkumensis SK2 AraC family transcriptional regulator YP_692166.1 488507 D 393595 CDS YP_692167.1 110833308 4213112 489643..490062 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 490062 4213112 ABO_0447 Alcanivorax borkumensis SK2 hypothetical protein YP_692167.1 489643 D 393595 CDS YP_692168.1 110833309 4213113 490059..490256 1 NC_008260.1 hypothetical protein 490256 4213113 ABO_0448 Alcanivorax borkumensis SK2 hypothetical protein YP_692168.1 490059 D 393595 CDS YP_692169.1 110833310 4213114 complement(490339..490620) 1 NC_008260.1 hypothetical protein 490620 4213114 ABO_0449 Alcanivorax borkumensis SK2 hypothetical protein YP_692169.1 490339 R 393595 CDS YP_692170.1 110833311 4213115 complement(490620..491207) 1 NC_008260.1 hypothetical protein 491207 4213115 ABO_0450 Alcanivorax borkumensis SK2 hypothetical protein YP_692170.1 490620 R 393595 CDS YP_692171.1 110833312 4213116 complement(491228..492151) 1 NC_008260.1 transferases identified by sequence similarity; InterPro: Polyprenyl synthetase; Function unclear; transferase 492151 4213116 ABO_0451 Alcanivorax borkumensis SK2 transferase YP_692171.1 491228 R 393595 CDS YP_692172.1 110833313 4212290 492441..492776 1 NC_008260.1 (ribosomal protein L21) identified by sequence similarity; InterPro: Ribosomal protein L21; High confidence in function and specificity; 50S ribosomal protein L21 492776 rplU 4212290 rplU Alcanivorax borkumensis SK2 50S ribosomal protein L21 YP_692172.1 492441 D 393595 CDS YP_692173.1 110833314 4212295 492822..493082 1 NC_008260.1 involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 493082 rpmA 4212295 rpmA Alcanivorax borkumensis SK2 50S ribosomal protein L27 YP_692173.1 492822 D 393595 CDS YP_692174.1 110833315 4213117 493209..494384 1 NC_008260.1 essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 494384 obgE 4213117 obgE Alcanivorax borkumensis SK2 GTPase ObgE YP_692174.1 493209 D 393595 CDS YP_692175.1 110833316 4211220 494452..495582 1 NC_008260.1 catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 495582 proB 4211220 proB Alcanivorax borkumensis SK2 gamma-glutamyl kinase YP_692175.1 494452 D 393595 CDS YP_692176.1 110833317 4212565 complement(495692..495958) 1 NC_008260.1 (ribosomal protein S20) identified by sequencesimilarity; InterPro: Ribosomal protein S20; High confidence in function and specificity; 30S ribosomal protein S20 495958 rpsT 4212565 rpsT Alcanivorax borkumensis SK2 30S ribosomal protein S20 YP_692176.1 495692 R 393595 CDS YP_692177.1 110833318 4213118 496206..497771 1 NC_008260.1 identified by match to PFAM protein family HMMPF03023 InterPro: Virulence factor MVIN-like; Family membership; MviN family membrane protein 497771 4213118 ABO_0457 Alcanivorax borkumensis SK2 MviN family membrane protein YP_692177.1 496206 D 393595 CDS YP_692178.1 110833319 4212044 497855..498832 1 NC_008260.1 (riboflavin biosynthesis protein RibF) identified by sequence similarity; InterPro: Riboflavin kinase / FAD synthetase; High confidence in function and specificity; FAD pyrophosphorylase 498832 ribF 4212044 ribF Alcanivorax borkumensis SK2 FAD pyrophosphorylase YP_692178.1 497855 D 393595 CDS YP_692179.1 110833320 4211348 498844..501657 1 NC_008260.1 identified by sequencesimilarity; InterPro: Isoleucyl-tRNA synthetase; High confidence in function and specificity; isoleucyl-tRNA synthetase 501657 ileS 4211348 ileS Alcanivorax borkumensis SK2 isoleucyl-tRNA synthetase YP_692179.1 498844 D 393595 CDS YP_692180.1 110833321 4213810 501683..502195 1 NC_008260.1 Region start changed from 501650 to 501683 (-33 bases); signal peptidase II 502195 4213810 ABO_0460 Alcanivorax borkumensis SK2 signal peptidase II YP_692180.1 501683 D 393595 CDS YP_692181.1 110833322 4212481 502188..502658 1 NC_008260.1 peptidyl-prolyl cis-trans isomerase FKBP-type identified by sequencesimilarity; InterPro: FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase); Specificity unclear; peptidyl-prolyl isomerase 502658 fkpB 4212481 fkpB Alcanivorax borkumensis SK2 peptidyl-prolyl isomerase YP_692181.1 502188 D 393595 CDS YP_692182.1 110833323 4211493 502784..503719 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00216 InterPro: LytB protein; High confidence in function and specificity; LytB protein 503719 lytB 4211493 lytB Alcanivorax borkumensis SK2 LytB protein YP_692182.1 502784 D 393595 CDS YP_692183.1 110833324 4211379 503975..504463 1 NC_008260.1 ( pilus biogenesis protein); Family membership; pilus biogenesis protein 504463 pilN 4211379 pilN Alcanivorax borkumensis SK2 pilus biogenesis protein YP_692183.1 503975 D 393595 CDS YP_692184.1 110833325 4213811 504463..504981 1 NC_008260.1 hypothetical protein 504981 4213811 ABO_0464 Alcanivorax borkumensis SK2 hypothetical protein YP_692184.1 504463 D 393595 CDS YP_692185.1 110833326 4213812 504954..505706 1 NC_008260.1 hypothetical protein 505706 4213812 ABO_0465 Alcanivorax borkumensis SK2 hypothetical protein YP_692185.1 504954 D 393595 CDS YP_692186.1 110833327 4213813 505691..506242 1 NC_008260.1 hypothetical protein 506242 4213813 ABO_0466 Alcanivorax borkumensis SK2 hypothetical protein YP_692186.1 505691 D 393595 CDS YP_692187.1 110833328 4213814 506252..509281 1 NC_008260.1 Conserved hypothetical protein; pilin biogenesis-like protein 509281 4213814 ABO_0467 Alcanivorax borkumensis SK2 pilin biogenesis-like protein YP_692187.1 506252 D 393595 CDS YP_692188.1 110833329 4213815 509301..509750 1 NC_008260.1 secretion protein identifiedby sequence similarity; InterPro: Fimbrial protein pilin; High confidence in function and specificity; secretion protein 509750 4213815 ABO_0468 Alcanivorax borkumensis SK2 secretion protein YP_692188.1 509301 D 393595 CDS YP_692189.1 110833330 4213816 complement(509747..510277) 1 NC_008260.1 hypothetical protein 510277 4213816 ABO_0469 Alcanivorax borkumensis SK2 hypothetical protein YP_692189.1 509747 R 393595 CDS YP_692190.1 110833331 4213817 510443..511480 1 NC_008260.1 oxidoreductase FAD-binding identified by sequencesimilarity; InterPro: D-amino acid oxidase; Function unclear; oxidoreductase 511480 4213817 ABO_0470 Alcanivorax borkumensis SK2 oxidoreductase YP_692190.1 510443 D 393595 CDS YP_692191.1 110833332 4213818 complement(511420..512814) 1 NC_008260.1 Fis family transcriptional regulator 512814 4213818 ABO_0471 Alcanivorax borkumensis SK2 Fis family transcriptional regulator YP_692191.1 511420 R 393595 CDS YP_692192.1 110833333 4211384 complement(512826..514460) 1 NC_008260.1 identified by match to PFAM protein family HMMPF04306 InterPro: Histidine kinase C-terminal; High confidence in function and specificity; two-component sensor histidine kinase 514460 pilS 4211384 pilS Alcanivorax borkumensis SK2 two-component sensor histidine kinase YP_692192.1 512826 R 393595 CDS YP_692193.1 110833334 4213819 complement(514369..514611) 1 NC_008260.1 hypothetical protein 514611 4213819 ABO_0473 Alcanivorax borkumensis SK2 hypothetical protein YP_692193.1 514369 R 393595 CDS YP_692194.1 110833335 4213820 514734..516359 1 NC_008260.1 NAD+ synthase (glutamine-hydrolysing) identified by sequencesimilarity; Specificity unclear; NAD+ synthetase 516359 4213820 ABO_0474 Alcanivorax borkumensis SK2 NAD+ synthetase YP_692194.1 514734 D 393595 CDS YP_692195.1 110833336 4213821 complement(516462..517280) 1 NC_008260.1 identified by sequence similarity; shows high similarity to the PFAM(UPF0169)protein. Members of this family are predicted to be lipoproteins. The function of these proteins is unknown. Possibly this protein is involved in DNA uptake.; Function unclear; competence lipoprotein ComL 517280 4213821 ABO_0475 Alcanivorax borkumensis SK2 competence lipoprotein ComL YP_692195.1 516462 R 393595 CDS YP_692196.1 110833337 4212111 517349..518320 1 NC_008260.1 ThrB family protein/aminotransferase class III) identified by sequencesimilarity; InterPro: Pseudouridine synthase Rlu family; High confidence in function and specificity; pseudouridylate synthase 518320 rlud 4212111 rlud Alcanivorax borkumensis SK2 pseudouridylate synthase YP_692196.1 517349 D 393595 CDS YP_692197.1 110833338 4213822 518410..519156 1 NC_008260.1 hypothetical protein 519156 4213822 ABO_0477 Alcanivorax borkumensis SK2 hypothetical protein YP_692197.1 518410 D 393595 CDS YP_692198.1 110833339 4213823 519166..519387 1 NC_008260.1 hypothetical protein 519387 4213823 ABO_0478 Alcanivorax borkumensis SK2 hypothetical protein YP_692198.1 519166 D 393595 CDS YP_692199.1 110833340 4212463 519451..522048 1 NC_008260.1 Specificity unclear; ATP-dependent Clp protease, ATP-binding subunit ClpB 522048 clpB 4212463 clpB Alcanivorax borkumensis SK2 ATP-dependent Clp protease, ATP-binding subunit ClpB YP_692199.1 519451 D 393595 CDS YP_692200.1 110833341 4213824 complement(522129..522590) 1 NC_008260.1 hypothetical protein 522590 4213824 ABO_0480 Alcanivorax borkumensis SK2 hypothetical protein YP_692200.1 522129 R 393595 CDS YP_692201.1 110833342 4211350 523056..524777 1 NC_008260.1 catalyzes the formation of 2-acetolactate from pyruvate, leucine sensitive; also known as acetolactate synthase large subunit; acetolactate synthase 3 catalytic subunit 524777 ilvB-1 4211350 ilvB-1 Alcanivorax borkumensis SK2 acetolactate synthase 3 catalytic subunit YP_692201.1 523056 D 393595 CDS YP_692202.1 110833343 4211199 524777..525268 1 NC_008260.1 with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit 525268 ilvH 4211199 ilvH Alcanivorax borkumensis SK2 acetolactate synthase 3 regulatory subunit YP_692202.1 524777 D 393595 CDS YP_692203.1 110833344 4213825 525423..527327 1 NC_008260.1 hypothetical protein 527327 4213825 ABO_0483 Alcanivorax borkumensis SK2 hypothetical protein YP_692203.1 525423 D 393595 CDS YP_692204.1 110833345 4213826 complement(527392..528279) 1 NC_008260.1 participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 528279 4213826 ABO_0484 Alcanivorax borkumensis SK2 DNA-binding transcriptional regulator IlvY YP_692204.1 527392 R 393595 CDS YP_692205.1 110833346 4211352 528462..529484 1 NC_008260.1 catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 529484 ilvC 4211352 ilvC Alcanivorax borkumensis SK2 ketol-acid reductoisomerase YP_692205.1 528462 D 393595 CDS YP_692206.1 110833347 4211227 529590..530414 1 NC_008260.1 identified by match to PFAM protein family HMMPF03653; High confidence in function and specificity; CDP-diacylglycerol--serine O-phosphatidyltransferase 530414 pssA 4211227 pssA Alcanivorax borkumensis SK2 CDP-diacylglycerol--serine O-phosphatidyltransferase YP_692206.1 529590 D 393595 CDS YP_692207.1 110833348 4213827 536350..536889 1 NC_008260.1 hypothetical protein 536889 4213827 ABO_0487 Alcanivorax borkumensis SK2 hypothetical protein YP_692207.1 536350 D 393595 CDS YP_692208.1 110833349 4213828 complement(536881..537825) 1 NC_008260.1 cytosolic protein with phosphatidylglycerol kinase activity; undetermined physiological role; lipid kinase 537825 4213828 ABO_0488 Alcanivorax borkumensis SK2 lipid kinase YP_692208.1 536881 R 393595 CDS YP_692209.1 110833350 4212862 537982..538188 1 NC_008260.1 hypothetical protein 538188 4212862 ABO_0489 Alcanivorax borkumensis SK2 hypothetical protein YP_692209.1 537982 D 393595 CDS YP_692210.1 110833351 4212863 538199..538942 1 NC_008260.1 transcriptional regulator TetR family identified by match to PFAM protein family HMMPF00440 InterPro: Bacterial regulatory proteins TetR family; Family membership; TetR family transcriptional regulator 538942 4212863 ABO_0490 Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_692210.1 538199 D 393595 CDS YP_692211.1 110833352 4212864 complement(538964..539776) 1 NC_008260.1 hypothetical protein 539776 4212864 ABO_0491 Alcanivorax borkumensis SK2 hypothetical protein YP_692211.1 538964 R 393595 CDS YP_692212.1 110833353 4211958 complement(540270..543065) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00133 InterPro: Valyl-tRNA synthetase; High confidence in function and specificity; valyl-tRNA synthetase 543065 valS 4211958 valS Alcanivorax borkumensis SK2 valyl-tRNA synthetase YP_692212.1 540270 R 393595 CDS YP_692213.1 110833354 4212865 complement(543203..543583) 1 NC_008260.1 hypothetical protein 543583 4212865 ABO_0493 Alcanivorax borkumensis SK2 hypothetical protein YP_692213.1 543203 R 393595 CDS YP_692214.1 110833355 4211480 complement(543607..544053) 1 NC_008260.1 identified by sequencesimilarity; High confidence in function and specificity; DNA polymerase III subunit chi 544053 holC 4211480 holC Alcanivorax borkumensis SK2 DNA polymerase III subunit chi YP_692214.1 543607 R 393595 CDS YP_692215.1 110833356 4212452 complement(544097..545566) 1 NC_008260.1 (leucyl aminopeptidase, leucine aminopeptidase, cytosol aminopeptidase) identified by sequence similarity; identified by match to PFAM protein family HMMPF00883 InterPro: Cytosol aminopeptidase; High confidence in function and specificity; leucyl aminopeptidase 545566 pepA 4212452 pepA Alcanivorax borkumensis SK2 leucyl aminopeptidase YP_692215.1 544097 R 393595 CDS YP_692216.1 110833357 4212866 545842..546948 1 NC_008260.1 (conserved hypothetical protein) identified by sequencesimilarity; Specificity unclear; hypothetical protein 546948 4212866 ABO_0496 Alcanivorax borkumensis SK2 hypothetical protein YP_692216.1 545842 D 393595 CDS YP_692217.1 110833358 4212867 546945..548006 1 NC_008260.1 (conserved hypothetical protein) identified by sequence similarity; Specificity unclear; hypothetical protein 548006 4212867 ABO_0497 Alcanivorax borkumensis SK2 hypothetical protein YP_692217.1 546945 D 393595 CDS YP_692218.1 110833359 4212868 548268..548456 1 NC_008260.1 hypothetical protein 548456 4212868 ABO_0498 Alcanivorax borkumensis SK2 hypothetical protein YP_692218.1 548268 D 393595 CDS YP_692219.1 110833360 4212869 548522..548992 1 NC_008260.1 hypothetical protein 548992 4212869 ABO_0499 Alcanivorax borkumensis SK2 hypothetical protein YP_692219.1 548522 D 393595 CDS YP_692220.1 110833361 4211646 549147..550226 1 NC_008260.1 isomerase identified by sequence similarity; InterPro: Queuosine biosynthesis protein; High confidence in function and specificity; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 550226 queA 4211646 queA Alcanivorax borkumensis SK2 S-adenosylmethionine--tRNA ribosyltransferase-isomerase YP_692220.1 549147 D 393595 CDS YP_692221.1 110833362 4211934 550288..551409 1 NC_008260.1 identified by sequence similarity; InterPro: Queuine and other tRNA-ribosyltransferase Queuine tRNA-ribosyltransferase; High confidence in function and specificity; queuine tRNA-ribosyltransferase 551409 tgt 4211934 tgt Alcanivorax borkumensis SK2 queuine tRNA-ribosyltransferase YP_692221.1 550288 D 393595 CDS YP_692222.1 110833363 4211785 551433..551795 1 NC_008260.1 identified by match to PFAM protein family HMMPF02699 InterPro: Domain of unknown function DUF219; Family membership; preprotein translocase subunit YajC 551795 yajC 4211785 yajC Alcanivorax borkumensis SK2 preprotein translocase subunit YajC YP_692222.1 551433 D 393595 CDS YP_692223.1 110833364 4212646 551947..553860 1 NC_008260.1 (protein-export membrane protein SecD) identified by sequencesimilarity; High confidence in function and specificity; preprotein translocase subunit SecD 553860 secD 4212646 secD Alcanivorax borkumensis SK2 preprotein translocase subunit SecD YP_692223.1 551947 D 393595 CDS YP_692224.1 110833365 4212648 553868..554791 1 NC_008260.1 (protein-export membrane protein SecF) identified by match to PFAM protein family HMMPF03631 InterPro: SecD/SecF/SecDF export membrane proteins; High confidence in function and specificity; preprotein translocase subunit SecF 554791 secF 4212648 secF Alcanivorax borkumensis SK2 preprotein translocase subunit SecF YP_692224.1 553868 D 393595 CDS YP_692225.1 110833366 4212870 554902..555402 1 NC_008260.1 hypothetical protein 555402 4212870 ABO_0505 Alcanivorax borkumensis SK2 hypothetical protein YP_692225.1 554902 D 393595 CDS YP_692226.1 110833367 4212871 complement(555535..556740) 1 NC_008260.1 (aminotransferase, ) identified by sequence similarity; identified by match to PFAM protein family HMMPF00155 InterPro: Aminotransferases class-I; Family membership; aminotransferase 556740 4212871 ABO_0506 Alcanivorax borkumensis SK2 aminotransferase YP_692226.1 555535 R 393595 CDS YP_692227.1 110833368 4212872 complement(556757..558178) 1 NC_008260.1 carbon-nitrogen ligase with glutamine as amido-N-donor, amidase family protein identified by sequencesimilarity; InterPro: Amidase; Family membership; amidase 558178 4212872 ABO_0507 Alcanivorax borkumensis SK2 amidase YP_692227.1 556757 R 393595 CDS YP_692228.1 110833369 4212873 complement(558256..559227) 1 NC_008260.1 (D-isomer specific 2-hydroxyacid dehydrogenase family protein) identified by match to PFAM protein family HMMPF00389; InterPro: D-isomer specific 2-hydroxyacid dehydrogenase; Family membership; D-isomer specific 2-hydroxyacid dehydrogenase family protein 559227 4212873 ABO_0508 Alcanivorax borkumensis SK2 D-isomer specific 2-hydroxyacid dehydrogenase family protein YP_692228.1 558256 R 393595 CDS YP_692229.1 110833370 4212874 complement(559327..560574) 1 NC_008260.1 (aminotransferase, ) identified by sequence similarity; identified by match to PFAM protein family HMMPF00202 InterPro: Aminotransferase class-III pyridoxal-phosphate; Specificity unclear; aminotransferase 560574 4212874 ABO_0509 Alcanivorax borkumensis SK2 aminotransferase YP_692229.1 559327 R 393595 CDS YP_692230.1 110833371 4211931 complement(560717..561868) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF00180 InterPro: Isocitrate and isopropylmalate dehydrogenases; High confidence in function and specificity; tartrate dehydrogenase 561868 tdh 4211931 tdh Alcanivorax borkumensis SK2 tartrate dehydrogenase YP_692230.1 560717 R 393595 CDS YP_692231.1 110833372 4211566 complement(562019..563476) 1 NC_008260.1 (succinate-semialdehyde dehydrogenase) identified by sequencesimilarity; InterPro: Aldehyde dehydrogenase family; High confidence in function and specificity; succinate-semialdehyde dehydrogenase 563476 gabD 4211566 gabD Alcanivorax borkumensis SK2 succinate-semialdehyde dehydrogenase YP_692231.1 562019 R 393595 CDS YP_692232.1 110833373 4211978 complement(563725..564543) 1 NC_008260.1 (myo-inositol-1(or 4)-monophosphatase (extragenic suppressor protein SuhB)) identified by sequence similarity; InterPro: Inositol monophosphatase; High confidence in function and specificity; myo-inositol-1(or 4)-monophosphatase 564543 suhB 4211978 suhB Alcanivorax borkumensis SK2 myo-inositol-1(or 4)-monophosphatase YP_692232.1 563725 R 393595 CDS YP_692233.1 110833374 4212875 564704..565489 1 NC_008260.1 RNA methyltransferase TrmH family group 1 identified by match to PFAM protein family HMMPF00588 InterPro: RNA methyltransferase TrmH family group 1; Family membership; RNA methyltransferase 565489 4212875 ABO_0513 Alcanivorax borkumensis SK2 RNA methyltransferase YP_692233.1 564704 D 393595 CDS YP_692234.1 110833375 4213667 565557..566324 1 NC_008260.1 identified by sequence similarity; InterPro: Bacterial transferase hexapeptide repeat; High confidence in function and specificity; serine acetyltransferase 566324 cysE 4213667 cysE Alcanivorax borkumensis SK2 serine acetyltransferase YP_692234.1 565557 D 393595 CDS YP_692235.1 110833376 4212876 complement(566468..567559) 1 NC_008260.1 translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 567559 4212876 ABO_0515 Alcanivorax borkumensis SK2 GTP-dependent nucleic acid-binding protein EngD YP_692235.1 566468 R 393595 CDS YP_692236.1 110833377 4211233 complement(567732..568319) 1 NC_008260.1 Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 568319 pth 4211233 pth Alcanivorax borkumensis SK2 peptidyl-tRNA hydrolase YP_692236.1 567732 R 393595 CDS YP_692237.1 110833378 4212294 complement(568328..568972) 1 NC_008260.1 the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 568972 rplY 4212294 rplY Alcanivorax borkumensis SK2 50S ribosomal protein L25 YP_692237.1 568328 R 393595 CDS YP_692238.1 110833379 4212877 complement(569179..570138) 1 NC_008260.1 catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 570138 4212877 ABO_0518 Alcanivorax borkumensis SK2 ribose-phosphate pyrophosphokinase YP_692238.1 569179 R 393595 CDS YP_692239.1 110833380 4211207 complement(570311..571216) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00288 InterPro: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; High confidence in function and specificity; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 571216 ispE 4211207 ispE Alcanivorax borkumensis SK2 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_692239.1 570311 R 393595 CDS YP_692240.1 110833381 4212878 complement(571213..571800) 1 NC_008260.1 outer membrane lipoprotein LolB identified by match to PFAM protein family HMMPF03550; Family membership; molecular chaperone LolB 571800 4212878 ABO_0520 Alcanivorax borkumensis SK2 molecular chaperone LolB YP_692240.1 571213 R 393595 CDS YP_692241.1 110833382 4212879 complement(571797..573395) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00515; Specificity unclear; hypothetical protein 573395 4212879 ABO_0521 Alcanivorax borkumensis SK2 hypothetical protein YP_692241.1 571797 R 393595 CDS YP_692242.1 110833383 4212665 573722..574978 1 NC_008260.1 glutamyl-tRNA reductase identifiedby sequence similarity; InterPro: Glutamyl-tRNA reductase; High confidence in function and specificity; glutamyl-tRNA reductase 574978 hemA 4212665 hemA Alcanivorax borkumensis SK2 glutamyl-tRNA reductase YP_692242.1 573722 D 393595 CDS YP_692243.1 110833384 4212276 575060..576145 1 NC_008260.1 identified by sequence similarity; InterPro: Peptide chain release factor 1; High confidence in function and specificity; peptide chain release factor 1 576145 prfA 4212276 prfA Alcanivorax borkumensis SK2 peptide chain release factor 1 YP_692243.1 575060 D 393595 CDS YP_692244.1 110833385 4212188 576148..576990 1 NC_008260.1 (methyl transferase) identified by sequencesimilarity; InterPro: Modification methylase HemK family; Function unclear; methyltransferase 576990 hemK 4212188 hemK Alcanivorax borkumensis SK2 methyltransferase YP_692244.1 576148 D 393595 CDS YP_692245.1 110833386 4211363 577090..577833 1 NC_008260.1 molybdopterin biosynthesis MoeB protein identified by sequencesimilarity; InterPro: UBA/THIF-type NAD/FAD binding fold; Family membership; molybdopterin biosynthesis MoeB protein 577833 moeB 4211363 moeB Alcanivorax borkumensis SK2 molybdopterin biosynthesis MoeB protein YP_692245.1 577090 D 393595 CDS YP_692246.1 110833387 4211331 complement(578775..579587) 1 NC_008260.1 identified by sequence similarity; InterPro: Enoyl-CoA hydratase/isomerase; Specificity unclear; enoyl-CoA hydratase 579587 phaB 4211331 phaB Alcanivorax borkumensis SK2 enoyl-CoA hydratase YP_692246.1 578775 R 393595 CDS YP_692247.1 110833388 4211685 complement(579584..581023) 1 NC_008260.1 allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 581023 gatB 4211685 gatB Alcanivorax borkumensis SK2 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_692247.1 579584 R 393595 CDS YP_692248.1 110833389 4211684 complement(581020..582495) 1 NC_008260.1 identified by sequence similarity; InterPro: Glutamyl-tRNA(Gln) amidotransferase A subunit; High confidence in function and specificity; glutamyl-tRNA(Gln) amidotransferase subunit A 582495 gatA 4211684 gatA Alcanivorax borkumensis SK2 glutamyl-tRNA(Gln) amidotransferase subunit A YP_692248.1 581020 R 393595 CDS YP_692249.1 110833390 4211686 complement(582526..582813) 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; glutamyl-tRNA(Gln) amidotransferase subunit C 582813 gatC 4211686 gatC Alcanivorax borkumensis SK2 glutamyl-tRNA(Gln) amidotransferase subunit C YP_692249.1 582526 R 393595 CDS YP_692250.1 110833391 4211367 583140..584177 1 NC_008260.1 functions in MreBCD complex in some organisms; rod shape-determining protein MreB 584177 mreB 4211367 mreB Alcanivorax borkumensis SK2 rod shape-determining protein MreB YP_692250.1 583140 D 393595 CDS YP_692251.1 110833392 4211368 584183..585037 1 NC_008260.1 identified by sequencesimilarity; High confidence in function and specificity; rod shape determining protein MreC 585037 mreC 4211368 mreC Alcanivorax borkumensis SK2 rod shape determining protein MreC YP_692251.1 584183 D 393595 CDS YP_692252.1 110833393 4211369 585027..585518 1 NC_008260.1 identified by match to PFAM protein family HMMPF04093; High confidence in function and specificity; rod shape-determining protein MreD 585518 mreD 4211369 mreD Alcanivorax borkumensis SK2 rod shape-determining protein MreD YP_692252.1 585027 D 393595 CDS YP_692253.1 110833394 4211495 585647..586228 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00172 InterPro: Maf-like protein; High confidence in function and specificity; maf protein 586228 maf-1 4211495 maf-1 Alcanivorax borkumensis SK2 maf protein YP_692253.1 585647 D 393595 CDS YP_692254.1 110833395 4212880 586232..590053 1 NC_008260.1 hypothetical protein 590053 4212880 ABO_0534 Alcanivorax borkumensis SK2 hypothetical protein YP_692254.1 586232 D 393595 CDS YP_692255.1 110833396 4212881 590050..590907 1 NC_008260.1 identified by sequencesimilarity; InterPro: Carbon-nitrogen hydrolase; Family membership; carbon-nitrogen hydrolase family protein 590907 4212881 ABO_0535 Alcanivorax borkumensis SK2 carbon-nitrogen hydrolase family protein YP_692255.1 590050 D 393595 CDS YP_692256.1 110833397 4211945 590822..592342 1 NC_008260.1 identified by sequence similarity; InterPro: modulator of DNA gyrase; High confidence in function and specificity; TldD protein 592342 tldD 4211945 tldD Alcanivorax borkumensis SK2 TldD protein YP_692256.1 590822 D 393595 CDS YP_692257.1 110833398 4212785 592342..592803 1 NC_008260.1 InterPro: Cyclic nucleotide-binding domain; Function unclear; cyclic nucleotide-binding protein 592803 4212785 ABO_0537 Alcanivorax borkumensis SK2 cyclic nucleotide-binding protein YP_692257.1 592342 D 393595 CDS YP_692258.1 110833399 4212786 592730..594328 1 NC_008260.1 (MORN domain protein) identified by match to PFAM protein family HMMPF02493 InterPro: MORN motif The MORN (Membrane Occupation and Recognition Nexus) motif is found in multiple copies in several proteins including junctophilins. The function of this motif is unknown.; Conserved hypothetical protein; hypothetical protein 594328 4212786 ABO_0538 Alcanivorax borkumensis SK2 hypothetical protein YP_692258.1 592730 D 393595 CDS YP_692259.1 110833400 4212787 complement(594355..594894) 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 594894 4212787 ABO_0539 Alcanivorax borkumensis SK2 hypothetical protein YP_692259.1 594355 R 393595 CDS YP_692260.1 110833401 4212263 594930..596285 1 NC_008260.1 identified by sequence similarity; InterPro: modulator of DNA gyrase; Function unclear; pmbA protein 596285 pmbA 4212263 pmbA Alcanivorax borkumensis SK2 pmbA protein YP_692260.1 594930 D 393595 CDS YP_692261.1 110833402 4211511 complement(596350..597714) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00400 InterPro: Divalent cation transporter; High confidence in function and specificity; magnesium transporter 597714 mgtE 4211511 mgtE Alcanivorax borkumensis SK2 magnesium transporter YP_692261.1 596350 R 393595 CDS YP_692262.1 110833403 4212788 complement(598330..599139) 1 NC_008260.1 PpiC-type peptidyl-prolyl cis-trans isomerase; Function unclear; peptidyl-prolyl isomerase 599139 4212788 ABO_0542 Alcanivorax borkumensis SK2 peptidyl-prolyl isomerase YP_692262.1 598330 R 393595 CDS YP_692263.1 110833404 4211421 complement(599160..599849) 1 NC_008260.1 narI. Respiratory nitrate reductase 1 gamma chain InterPro: Nitrate reductase gamma subunit; High confidence in function and specificity; respiratory nitrate reductase 1 subunit gamma 599849 narI 4211421 narI Alcanivorax borkumensis SK2 respiratory nitrate reductase 1 subunit gamma YP_692263.1 599160 R 393595 CDS YP_692264.1 110833405 4211422 complement(599842..600618) 1 NC_008260.1 narJ. Respiratory nitrate reductase 1 delta chain InterPro: Nitrate reductase delta subunit; High confidence in function and specificity; respiratory nitrate reductase 1 subunit delta 600618 narJ 4211422 narJ Alcanivorax borkumensis SK2 respiratory nitrate reductase 1 subunit delta YP_692264.1 599842 R 393595 CDS YP_692265.1 110833406 4211420 complement(600590..602143) 1 NC_008260.1 narH. Respiratory nitrate reductase 1 beta chain; High confidence in function and specificity; respiratory nitrate reductase 1 subunit beta 602143 narH 4211420 narH Alcanivorax borkumensis SK2 respiratory nitrate reductase 1 subunit beta YP_692265.1 600590 R 393595 CDS YP_692266.1 110833407 4211419 complement(602140..605880) 1 NC_008260.1 (Respiratory nitrate reductase 1 alpha chain) identified by sequencesimilarity; High confidence in function and specificity; respiratory nitrate reductase 605880 narG 4211419 narG Alcanivorax borkumensis SK2 respiratory nitrate reductase YP_692266.1 602140 R 393595 CDS YP_692267.1 110833408 4211423 complement(605915..608554) 1 NC_008260.1 identified by sequence similarity; Family membership; nitrite extrusion protein 608554 narK 4211423 narK Alcanivorax borkumensis SK2 nitrite extrusion protein YP_692267.1 605915 R 393595 CDS YP_692268.1 110833409 4211235 complement(608693..608962) 1 NC_008260.1 Phosphotransferase system HPr-related protein NPr identified by sequencesimilarity; InterPro: Phosphocarrier HPr protein; Family membership; phosphotransferase system 608962 ptsO 4211235 ptsO Alcanivorax borkumensis SK2 phosphotransferase system YP_692268.1 608693 R 393595 CDS YP_692269.1 110833410 4212789 complement(609002..609850) 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 609850 4212789 ABO_0549 Alcanivorax borkumensis SK2 hypothetical protein YP_692269.1 609002 R 393595 CDS YP_692270.1 110833411 4211234 complement(609957..610430) 1 NC_008260.1 identified by sequencesimilarity; InterPro: phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; Family membership; phosphotransferase system, nitrogen regulatory IIA protein 610430 ptsN 4211234 ptsN Alcanivorax borkumensis SK2 phosphotransferase system, nitrogen regulatory IIA protein YP_692270.1 609957 R 393595 CDS YP_692271.1 110833412 4212790 complement(610446..610745) 1 NC_008260.1 sigma54 modulation protein) identified by sequence similarity; InterPro: Sigma 54 modulation protein / S30EA ribosomal protein; Family membership; sigma 54 modulation protein/ribosomal protein S30EA 610745 4212790 ABO_0551 Alcanivorax borkumensis SK2 sigma 54 modulation protein/ribosomal protein S30EA YP_692271.1 610446 R 393595 CDS YP_692272.1 110833413 4212369 complement(610856..612346) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Sigma-54 factor family; High confidence in function and specificity; RNA polymerase sigma-54 factor 612346 rpoN 4212369 rpoN Alcanivorax borkumensis SK2 RNA polymerase sigma-54 factor YP_692272.1 610856 R 393595 CDS YP_692273.1 110833414 4212791 complement(612457..613182) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00968 InterPro: AAA ATPase superfamily; Specificity unclear; ABC transporter ATP-binding protein 613182 4212791 ABO_0553 Alcanivorax borkumensis SK2 ABC transporter ATP-binding protein YP_692273.1 612457 R 393595 CDS YP_692274.1 110833415 4212792 complement(613179..613778) 1 NC_008260.1 identified by match to PFAM protein family HMMPF03968; hypothetical protein 613778 4212792 ABO_0554 Alcanivorax borkumensis SK2 hypothetical protein YP_692274.1 613179 R 393595 CDS YP_692275.1 110833416 4212793 complement(613753..614310) 1 NC_008260.1 hypothetical protein 614310 4212793 ABO_0555 Alcanivorax borkumensis SK2 hypothetical protein YP_692275.1 613753 R 393595 CDS YP_692276.1 110833417 4212794 complement(614307..614810) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01662; Specificity unclear; YrbI family phosphatase 614810 4212794 ABO_0556 Alcanivorax borkumensis SK2 YrbI family phosphatase YP_692276.1 614307 R 393595 CDS YP_692277.1 110833418 4211532 complement(614811..615779) 1 NC_008260.1 KpsF/GutQ family protein identified by match to PFAM protein family HMMPF01380 InterPro: KpsF/GutQ family protein; Family membership; KpsF/GutQ family protein 615779 kpsF 4211532 kpsF Alcanivorax borkumensis SK2 KpsF/GutQ family protein YP_692277.1 614811 R 393595 CDS YP_692278.1 110833419 4212795 615988..616635 1 NC_008260.1 (ttg2D) identified by sequence similarity; This family is a transporter which shows similarity to ABC transporters; Family membership; toluene-tolerance protein 616635 4212795 ABO_0558 Alcanivorax borkumensis SK2 toluene-tolerance protein YP_692278.1 615988 D 393595 CDS YP_692279.1 110833420 4212796 616810..617064 1 NC_008260.1 identified by sequence similarity; Family membership; toluene-tolerance protein 617064 4212796 ABO_0559 Alcanivorax borkumensis SK2 toluene-tolerance protein YP_692279.1 616810 D 393595 CDS YP_692280.1 110833421 4211239 617117..618379 1 NC_008260.1 (UDP-N-acetylglucosamine1-carboxyvinyltransferase) Alternate gene symbol: ttg2G; identified by sequence similarity; High confidence in function and specificity; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 618379 murA 4211239 murA Alcanivorax borkumensis SK2 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_692280.1 617117 D 393595 CDS YP_692281.1 110833422 4212797 618397..619041 1 NC_008260.1 short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase 619041 hisG 4212797 hisG Alcanivorax borkumensis SK2 ATP phosphoribosyltransferase YP_692281.1 618397 D 393595 CDS YP_692282.1 110833423 4212798 619215..620516 1 NC_008260.1 Region start changed from 619317 to 619215 (102 bases); histidinol dehydrogenase 620516 4212798 ABO_0562 Alcanivorax borkumensis SK2 histidinol dehydrogenase YP_692282.1 619215 D 393595 CDS YP_692283.1 110833424 4212199 620582..621709 1 NC_008260.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 621709 hisC-1 4212199 hisC-1 Alcanivorax borkumensis SK2 histidinol-phosphate aminotransferase YP_692283.1 620582 D 393595 CDS YP_692284.1 110833425 4212799 621924..623522 1 NC_008260.1 hypothetical protein 623522 4212799 ABO_0564 Alcanivorax borkumensis SK2 hypothetical protein YP_692284.1 621924 D 393595 CDS YP_692285.1 110833426 4212800 complement(623686..624783) 1 NC_008260.1 (algW) (HtrA-like protease AlgW) identified by match to PFAM protein family HMMPF00595; Function unclear; serine endopeptidases 624783 4212800 ABO_0565 Alcanivorax borkumensis SK2 serine endopeptidases YP_692285.1 623686 R 393595 CDS YP_692286.1 110833427 4212801 625040..625834 1 NC_008260.1 (conserved hypothetical protein TIGR00486); hypothetical protein 625834 4212801 ABO_0566 Alcanivorax borkumensis SK2 hypothetical protein YP_692286.1 625040 D 393595 CDS YP_692287.1 110833428 4212802 625865..626740 1 NC_008260.1 (conserved hypothetical protein TIGR00147) identified by sequencesimilarity; InterPro: DAG-kinase catalytic domain (presumed); hypothetical protein 626740 4212802 ABO_0567 Alcanivorax borkumensis SK2 hypothetical protein YP_692287.1 625865 D 393595 CDS YP_692288.1 110833429 4212803 complement(627170..627703) 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 627703 4212803 ABO_0568 Alcanivorax borkumensis SK2 hypothetical protein YP_692288.1 627170 R 393595 CDS YP_692289.1 110833430 4212980 627820..628452 1 NC_008260.1 identified by sequencesimilarity; InterPro: Esterase/lipase/thioesterase family active site; Specificity unclear; hypothetical protein 628452 4212980 ABO_0569 Alcanivorax borkumensis SK2 hypothetical protein YP_692289.1 627820 D 393595 CDS YP_692290.1 110833431 4212981 628593..629675 1 NC_008260.1 (AFG1-like ATPase, )identify by similarity to Pfam protein family PF03969 (AFG1_ATPase).; Family membership; AFG1-like ATPase 629675 4212981 ABO_0570 Alcanivorax borkumensis SK2 AFG1-like ATPase YP_692290.1 628593 D 393595 CDS YP_692291.1 110833432 4212982 629836..630984 1 NC_008260.1 acyl-CoA dehydrogenase identified by sequencesimilarity; InterPro: Acyl-CoA dehydrogenase; Specificity unclear; acyl-CoA dehydrogenase 630984 4212982 ABO_0571 Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_692291.1 629836 D 393595 CDS YP_692292.1 110833433 4212983 631284..632549 1 NC_008260.1 identified by sequencesimilarity; Family membership; long-chain fatty acid transporter 632549 4212983 ABO_0572 Alcanivorax borkumensis SK2 long-chain fatty acid transporter YP_692292.1 631284 D 393595 CDS YP_692293.1 110833434 4212984 632637..632762 1 NC_008260.1 hypothetical protein 632762 4212984 ABO_0573 Alcanivorax borkumensis SK2 hypothetical protein YP_692293.1 632637 D 393595 CDS YP_692294.1 110833435 4212985 complement(632772..633602) 1 NC_008260.1 hypothetical protein 633602 4212985 ABO_0574 Alcanivorax borkumensis SK2 hypothetical protein YP_692294.1 632772 R 393595 CDS YP_692295.1 110833436 4212986 complement(633933..635003) 1 NC_008260.1 oxidoreductase aldo/keto reductase family identified by match to TIGR protein family HMMTIGR01293 InterPro: Aldo/keto reductase family; Family membership; aldo/keto reductase 635003 4212986 ABO_0575 Alcanivorax borkumensis SK2 aldo/keto reductase YP_692295.1 633933 R 393595 CDS YP_692296.1 110833437 4212282 635264..635692 1 NC_008260.1 in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 635692 rplM 4212282 rplM Alcanivorax borkumensis SK2 50S ribosomal protein L13 YP_692296.1 635264 D 393595 CDS YP_692297.1 110833438 4212554 635704..636099 1 NC_008260.1 identified by sequence similarity; InterPro: Ribosomal protein S9; High confidence in function and specificity; 30S ribosomal protein S9 636099 rpsI 4212554 rpsI Alcanivorax borkumensis SK2 30S ribosomal protein S9 YP_692297.1 635704 D 393595 CDS YP_692298.1 110833439 4211317 636314..636901 1 NC_008260.1 (ubiquinol--cytochrome c reductase iron-sulfursubunit) identified by match to PFAM protein family HMMPF00355 InterPro: Rieske iron-sulfur protein 2Fe-2S subunit; High confidence in function and specificity; ubiquinol--cytochrome c reductase, iron-sulfur subunit 636901 petA 4211317 petA Alcanivorax borkumensis SK2 ubiquinol--cytochrome c reductase, iron-sulfur subunit YP_692298.1 636314 D 393595 CDS YP_692299.1 110833440 4211318 636898..638181 1 NC_008260.1 (ubiquinol--cytochrome c reductase cytochrome b) identified by sequence similarity; InterPro: Cytochrome b/b6; High confidence in function and specificity; ubiquinol-cytochrome c reductase cytochrome subunit B 638181 petB 4211318 petB Alcanivorax borkumensis SK2 ubiquinol-cytochrome c reductase cytochrome subunit B YP_692299.1 636898 D 393595 CDS YP_692300.1 110833441 4211319 638181..638837 1 NC_008260.1 (ubiquinol--cytochrome c reductase cytochrome c1) identified by sequencesimilarity; InterPro: Cytochrome c1; High confidence in function and specificity; ubiquinol-cytochrome c reductase cytochrome c1 subunit 638837 petC 4211319 petC Alcanivorax borkumensis SK2 ubiquinol-cytochrome c reductase cytochrome c1 subunit YP_692300.1 638181 D 393595 CDS YP_692301.1 110833442 4213646 638932..639570 1 NC_008260.1 identified by sequencesimilarity; InterPro: Glutathione S-transferase C terminus; High confidence in function and specificity; stringent starvation protein A 639570 sspA 4213646 sspA Alcanivorax borkumensis SK2 stringent starvation protein A YP_692301.1 638932 D 393595 CDS YP_692302.1 110833443 4213647 639573..639980 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; stringent starvation protein B 639980 sspB 4213647 sspB Alcanivorax borkumensis SK2 stringent starvation protein B YP_692302.1 639573 D 393595 CDS YP_692303.1 110833444 4212987 complement(640097..640684) 1 NC_008260.1 Protein which is posttranslationally modified by the attachment of at least one lipid or fatty acid, e.g. farnesyl, palmitate and myristate.; Function unclear; lipoprotein 640684 4212987 ABO_0583 Alcanivorax borkumensis SK2 lipoprotein YP_692303.1 640097 R 393595 CDS YP_692304.1 110833445 4212771 complement(640684..641271) 1 NC_008260.1 catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 641271 gmhA 4212771 gmhA Alcanivorax borkumensis SK2 phosphoheptose isomerase YP_692304.1 640684 R 393595 CDS YP_692305.1 110833446 4212988 complement(641334..641711) 1 NC_008260.1 InterPro: Uncharacterised protein family UPF0102; hypothetical protein 641711 4212988 ABO_0585 Alcanivorax borkumensis SK2 hypothetical protein YP_692305.1 641334 R 393595 CDS YP_692306.1 110833447 4212989 complement(641692..643569) 1 NC_008260.1 Protein which is posttranslationally modified by the attachment of at least one lipid or fatty acid, e.g. farnesyl, palmitate and myristate; Function unclear; lipoprotein 643569 4212989 ABO_0586 Alcanivorax borkumensis SK2 lipoprotein YP_692306.1 641692 R 393595 CDS YP_692307.1 110833448 4212990 643649..644476 1 NC_008260.1 (tetrapyrrole methylase family protein) identified by match to PFAM protein family HMMPF00590 InterPro: Uncharacterized protein family UPF0011 Methylase function: Catalysis of the transfer of a methyl group to an acceptor molecule; Family membership; tetrapyrrole methylase family protein 644476 4212990 ABO_0587 Alcanivorax borkumensis SK2 tetrapyrrole methylase family protein YP_692307.1 643649 D 393595 CDS YP_692308.1 110833449 4212991 645037..645870 1 NC_008260.1 InterPro: Metallo-beta-lactamase superfamily; hypothetical protein 645870 4212991 ABO_0588 Alcanivorax borkumensis SK2 hypothetical protein YP_692308.1 645037 D 393595 CDS YP_692309.1 110833450 4212992 646221..646661 1 NC_008260.1 (conserved hypothetical protein TIGR00242) identified by match to PFAM protein family HMMPF02381 InterPro: Domain of unknown function UPF0040; hypothetical protein 646661 4212992 ABO_0589 Alcanivorax borkumensis SK2 hypothetical protein YP_692309.1 646221 D 393595 CDS YP_692310.1 110833451 4212993 646661..647599 1 NC_008260.1 InterPro: Methyltransferase family; Specificity unclear; methyltransferase 647599 4212993 ABO_0590 Alcanivorax borkumensis SK2 methyltransferase YP_692310.1 646661 D 393595 CDS YP_692311.1 110833452 4211557 647599..647865 1 NC_008260.1 identified by sequence similarity; Family membership; cell division protein FtsL 647865 ftsl 4211557 ftsl Alcanivorax borkumensis SK2 cell division protein FtsL YP_692311.1 647599 D 393595 CDS YP_692312.1 110833453 4211555 647862..649583 1 NC_008260.1 identified by sequence similarity; InterPro: Penicillin binding protein transpeptidase domain; Hypothetical protein; penicillin-binding protein 3 649583 ftsI 4211555 ftsI Alcanivorax borkumensis SK2 penicillin-binding protein 3 YP_692312.1 647862 D 393595 CDS YP_692313.1 110833454 4211243 649580..651052 1 NC_008260.1 (UDP-N-acetylmuramoylalanyl-D-glutamate-2 6-diaminopimelate ligase) identified by match to PFAM protein family HMMPF01225 InterPro: Cytoplasmic peptidoglycan synthetases N-terminal; High confidence in function and specificity; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 651052 murE 4211243 murE Alcanivorax borkumensis SK2 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase YP_692313.1 649580 D 393595 CDS YP_692314.1 110833455 4211244 651049..652413 1 NC_008260.1 (UDP-N-acetylmuramoylalanyl-D-glutamyl-2 6-diaminopimelate--D-alanyl-D-alanyl ligase) identified by sequence similarity; InterPro: Cytoplasmic peptidoglycan synthetases N-terminal; High confidence in function and specificity; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase 652413 murF 4211244 murF Alcanivorax borkumensis SK2 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alan ine ligase YP_692314.1 651049 D 393595 CDS YP_692315.1 110833456 4211247 652413..653495 1 NC_008260.1 identified by match to PFAM protein family HMMPF04306 InterPro: Phospho-N-acetylmuramoyl-pentapeptide-transferase; High confidence in function and specificity; phospho-N-acetylmuramoyl-pentapeptide- transferase 653495 murX/mraY 4211247 murX/mraY Alcanivorax borkumensis SK2 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_692315.1 652413 D 393595 CDS YP_692316.1 110833457 4211242 653512..654837 1 NC_008260.1 identified by match to PFAM protein family HMMPF01225 InterPro: Cytoplasmic peptidoglycan synthetases N-terminal; High confidence in function and specificity; UDP-N-acetylmuramoylalanine--D-glutamate ligase 654837 murD 4211242 murD Alcanivorax borkumensis SK2 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_692316.1 653512 D 393595 CDS YP_692317.1 110833458 4211559 654830..655987 1 NC_008260.1 identified by match to PFAM protein family HMMPF01098 InterPro: Cell cycle proteins; Family membership; cell division protein FtsW 655987 ftsW 4211559 ftsW Alcanivorax borkumensis SK2 cell division protein FtsW YP_692317.1 654830 D 393595 CDS YP_692318.1 110833459 4211245 655984..657057 1 NC_008260.1 (UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapep tide) pyrophosphoryl-undecaprenolN-acetylglucosamine transferase) identified by match to PFAM protein family HMMPF04101 InterPro: Glycosyltransferase family 28; High confidence in function and specificity; UDP-N-acetylglucosamine--N-acetylmuramyl-(pentap eptide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 657057 murG 4211245 murG Alcanivorax borkumensis SK2 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentap eptide)pyrophosphoryl-undecaprenol N-acetylglucosamine transferase YP_692318.1 655984 D 393595 CDS YP_692319.1 110833460 4211241 657047..658471 1 NC_008260.1 (UDP-N-acetylmuramate--alanine ligase) identified by match to PFAM protein family HMMPF01225; High confidence in function and specificity; UDP-N-acetylmuramate--L-alanine ligase 658471 murC 4211241 murC Alcanivorax borkumensis SK2 UDP-N-acetylmuramate--L-alanine ligase YP_692319.1 657047 D 393595 CDS YP_692320.1 110833461 4212209 658464..659387 1 NC_008260.1 D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 659387 ddl 4212209 ddl Alcanivorax borkumensis SK2 D-alanine--D-alanine ligase YP_692320.1 658464 D 393595 CDS YP_692321.1 110833462 4211558 659380..660156 1 NC_008260.1 identified by match to PFAM protein family HMMPF03799; High confidence in function and specificity; cell division protein FtsQ 660156 ftsQ 4211558 ftsQ Alcanivorax borkumensis SK2 cell division protein FtsQ YP_692321.1 659380 D 393595 CDS YP_692322.1 110833463 4211552 660170..661405 1 NC_008260.1 identified by sequencesimilarity; InterPro: Cell division protein FtsA; High confidence in function and specificity; cell division protein FtsA 661405 ftsA 4211552 ftsA Alcanivorax borkumensis SK2 cell division protein FtsA YP_692322.1 660170 D 393595 CDS YP_692323.1 110833464 4211562 661501..662706 1 NC_008260.1 identified by sequencesimilarity; InterPro: Cell division protein FtsZ; High confidence in function and specificity; cell division protein FtsZ 662706 ftsZ 4211562 ftsZ Alcanivorax borkumensis SK2 cell division protein FtsZ YP_692323.1 661501 D 393595 CDS YP_692324.1 110833465 4211462 662816..663730 1 NC_008260.1 zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 663730 lpxC 4211462 lpxC Alcanivorax borkumensis SK2 UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase YP_692324.1 662816 D 393595 CDS YP_692325.1 110833466 4212994 complement(663881..664324) 1 NC_008260.1 hypothetical protein 664324 4212994 ABO_0605 Alcanivorax borkumensis SK2 hypothetical protein YP_692325.1 663881 R 393595 CDS YP_692326.1 110833467 4212995 664424..665356 1 NC_008260.1 identified by sequencesimilarity; InterPro: Peptidase family M23/M37; Family membership; M24/M37 family peptidase 665356 4212995 ABO_0606 Alcanivorax borkumensis SK2 M24/M37 family peptidase YP_692326.1 664424 D 393595 CDS YP_692327.1 110833468 4212644 665613..668336 1 NC_008260.1 identified by sequence similarity; InterPro: SecA protein; High confidence in function and specificity; preprotein translocase subunit SecA 668336 secA 4212644 secA Alcanivorax borkumensis SK2 preprotein translocase subunit SecA YP_692327.1 665613 D 393595 CDS YP_692328.1 110833469 4213483 668549..669772 1 NC_008260.1 bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 669772 argJ 4213483 argJ Alcanivorax borkumensis SK2 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase YP_692328.1 668549 D 393595 CDS YP_692329.1 110833470 4212996 669953..670891 1 NC_008260.1 identified by sequencesimilarity; InterPro: Mutator MutT involved in the go system responsible for removing an oxidatively damaged form of guanine (7,8-dihydro-8-oxoguanine) from dna and the nucleotide pool. 8-oxo-dgtp is inserted opposite da and dc residues of template dna with almost equal efficiency thus leading to a.t to g.c transversions. mutt specifically degrades 8-oxo-dgtp to the monophosphate belongs to the nudix hydrolase family; High confidence in function and specificity; hypothetical protein 670891 4212996 ABO_0609 Alcanivorax borkumensis SK2 hypothetical protein YP_692329.1 669953 D 393595 CDS YP_692330.1 110833471 4212997 complement(671005..671205) 1 NC_008260.1 identified by sequence similarity; hypothetical protein 671205 4212997 ABO_0610 Alcanivorax borkumensis SK2 hypothetical protein YP_692330.1 671005 R 393595 CDS YP_692331.1 110833472 4212470 complement(671227..671847) 1 NC_008260.1 (kinase ) identified by sequencesimilarity; High confidence in function and specificity; dephospho-CoA kinase 671847 coae 4212470 coae Alcanivorax borkumensis SK2 dephospho-CoA kinase YP_692331.1 671227 R 393595 CDS YP_692332.1 110833473 4211617 complement(671910..672785) 1 NC_008260.1 identified by sequence similarity InterPro: Prepilin cysteine protease (C20) type IV; High confidence in function and specificity; leaderpeptidase and N-methyltransferase 672785 pilD 4211617 pilD Alcanivorax borkumensis SK2 leaderpeptidase and N-methyltransferase YP_692332.1 671910 R 393595 CDS YP_692333.1 110833474 4211985 complement(672788..674020) 1 NC_008260.1 identified by sequence similarity; Family membership; type IV pilus assembly protein TapC 674020 tapC 4211985 tapC Alcanivorax borkumensis SK2 type IV pilus assembly protein TapC YP_692333.1 672788 R 393595 CDS YP_692334.1 110833475 4211616 complement(674017..675723) 1 NC_008260.1 identified by sequence similarity and match to PFAM protein family HMMPF00437 InterPro: Bacterial type II secretion system protein E; Family membership; type IV fimbrial assembly protein PilB 675723 pilB 4211616 pilB Alcanivorax borkumensis SK2 type IV fimbrial assembly protein PilB YP_692334.1 674017 R 393595 CDS YP_692335.1 110833476 4212998 676258..676704 1 NC_008260.1 (Pilin protein family, ); identify by similarity to PFAM protein family PF00114; Family membership; pilin family protein 676704 4212998 ABO_0615 Alcanivorax borkumensis SK2 pilin family protein YP_692335.1 676258 D 393595 CDS YP_692336.1 110833477 4212999 676711..678087 1 NC_008260.1 hypothetical protein 678087 4212999 ABO_0616 Alcanivorax borkumensis SK2 hypothetical protein YP_692336.1 676711 D 393595 CDS YP_692337.1 110833478 4211255 complement(678143..678985) 1 NC_008260.1 (nicotinate-nucleotide pyrophosphorylase) identified by sequencesimilarity; InterPro: Nicotinate-nucleotide pyrophosphorylase; High confidence in function and specificity; NAD pyrophosphorylase 678985 nadC 4211255 nadC Alcanivorax borkumensis SK2 NAD pyrophosphorylase YP_692337.1 678143 R 393595 CDS YP_692338.1 110833479 4213285 complement(679101..680438) 1 NC_008260.1 (sodium/alanine symporter, amino acid carrier protein alst, Na(+)-linked D-alanine/glycine permease, sodium/proton-dependent alanine carrier protein) identified by sequence similarity; identified by match to PFAM protein family HMMPF01235 and TIGRFAM protein family HMMTIGR00835; InterPro: Sodium:alanine symporter family; High confidence in function and specificity; sodium/alanine symporter 680438 dagA 4213285 dagA Alcanivorax borkumensis SK2 sodium/alanine symporter YP_692338.1 679101 R 393595 CDS YP_692339.1 110833480 4213707 680650..682887 1 NC_008260.1 identified by Glimmer2; high similarity to hypothetical protein pa4523 of Pseudomonas aeruginosa.; hypothetical protein 682887 4213707 ABO_0619 Alcanivorax borkumensis SK2 hypothetical protein YP_692339.1 680650 D 393595 CDS YP_692340.1 110833481 4213406 682942..683508 1 NC_008260.1 identified by sequencesimilarity; High confidence in function and specificity; N-acetyl-anhydromuranmyl-L-alanine amidase 683508 ampD 4213406 ampD Alcanivorax borkumensis SK2 N-acetyl-anhydromuranmyl-L-alanine amidase YP_692340.1 682942 D 393595 CDS YP_692341.1 110833482 4213407 683505..684353 1 NC_008260.1 Family membership; inner membrane protein AmpE 684353 ampE 4213407 ampE Alcanivorax borkumensis SK2 inner membrane protein AmpE YP_692341.1 683505 D 393595 CDS YP_692342.1 110833483 4211809 684709..687381 1 NC_008260.1 E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 687381 aceE 4211809 aceE Alcanivorax borkumensis SK2 pyruvate dehydrogenase subunit E1 YP_692342.1 684709 D 393595 CDS YP_692343.1 110833484 4211810 687434..689128 1 NC_008260.1 (pyruvate dehydrogenase dihydrolipoamideacetyltransferase component) identified by sequencesimilarity; InterPro: 2-Oxo acid dehydrogenase acyltransferase catalytic domain; High confidence in function and specificity; pyruvate dehydrogenase, E2 component 689128 aceF 4211810 aceF Alcanivorax borkumensis SK2 pyruvate dehydrogenase, E2 component YP_692343.1 687434 D 393595 CDS YP_692344.1 110833485 4213708 complement(689211..689519) 1 NC_008260.1 hypothetical protein 689519 4213708 ABO_0624 Alcanivorax borkumensis SK2 hypothetical protein YP_692344.1 689211 R 393595 CDS YP_692345.1 110833486 4213709 complement(689774..690457) 1 NC_008260.1 Possible response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain. Identified by match to TIGR protein family HMMTIGR01387 InterPro: Response regulator receiver domain; Family membership; two-component response regulatory protein 690457 4213709 ABO_0625 Alcanivorax borkumensis SK2 two-component response regulatory protein YP_692345.1 689774 R 393595 CDS YP_692346.1 110833487 4213710 complement(690454..691809) 1 NC_008260.1 Phosphotransferase with a nitrogenous group as acceptor; Family membership; phosphotransferase 691809 4213710 ABO_0626 Alcanivorax borkumensis SK2 phosphotransferase YP_692346.1 690454 R 393595 CDS YP_692347.1 110833488 4213711 complement(691986..692555) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00636 InterPro: Protein of unknown function DUF80; hypothetical protein 692555 4213711 ABO_0627 Alcanivorax borkumensis SK2 hypothetical protein YP_692347.1 691986 R 393595 CDS YP_692348.1 110833489 4213712 complement(692555..694516) 1 NC_008260.1 InterPro: TonB-dependent receptor protein; Family membership; TonB dependent receptor 694516 4213712 ABO_0628 Alcanivorax borkumensis SK2 TonB dependent receptor YP_692348.1 692555 R 393595 CDS YP_692349.1 110833490 4213713 complement(694725..695660) 1 NC_008260.1 2-dehydropantoate 2-reductase identified by sequence similarity; InterPro: Ketopantoate reductase ApbA/PanE; Specificity unclear; 2-dehydropantoate 2-reductase 695660 4213713 ABO_0629 Alcanivorax borkumensis SK2 2-dehydropantoate 2-reductase YP_692349.1 694725 R 393595 CDS YP_692350.1 110833491 4213408 complement(695944..697488) 1 NC_008260.1 (muropeptide permease ampG, ) identified by sequence similarity; identified by match to TIGRFAM protein family HMMTIGR00901; Function unclear; muropeptide permease AmpG 697488 ampG 4213408 ampG Alcanivorax borkumensis SK2 muropeptide permease AmpG YP_692350.1 695944 R 393595 CDS YP_692351.1 110833492 4213714 complement(697563..697868) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00589 InterPro: Methylated-DNA--protein-cysteine methyltransferase; hypothetical protein 697868 4213714 ABO_0631 Alcanivorax borkumensis SK2 hypothetical protein YP_692351.1 697563 R 393595 CDS YP_692352.1 110833493 4213715 complement(697984..698745) 1 NC_008260.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 698745 fabG 4213715 fabG Alcanivorax borkumensis SK2 3-ketoacyl-ACP reductase YP_692352.1 697984 R 393595 CDS YP_692353.1 110833494 4212356 699261..699551 1 NC_008260.1 identified by sequence similarity; InterPro: Chaperonins cpn10 (10 Kd subunit); High confidence in function and specificity; chaperonin, 10 kDa 699551 groES 4212356 groES Alcanivorax borkumensis SK2 chaperonin, 10 kDa YP_692353.1 699261 D 393595 CDS YP_692354.1 110833495 4212357 699691..701337 1 NC_008260.1 identified by sequence similarity; InterPro: TCP-1 (Tailless complex polypeptide)/cpn60 chaperonin family; High confidence in function and specificity; chaperonin, 60 kDa 701337 groEL 4212357 groEL Alcanivorax borkumensis SK2 chaperonin, 60 kDa YP_692354.1 699691 D 393595 CDS YP_692355.1 110833496 4213716 702432..704090 1 NC_008260.1 (reverse transcriptase homolog, group II intron-encoding maturase) identified by sequencesimilarity; InterPro: RNA-directed DNA polymerase (Reverse transcriptase); Family membership; reverse transcriptase/maturase-like protein 704090 4213716 ABO_0635 Alcanivorax borkumensis SK2 reverse transcriptase/maturase-like protein YP_692355.1 702432 D 393595 CDS YP_692356.1 110833497 4213717 704809..705411 1 NC_008260.1 identified by sequencesimilarity; InterPro: Rhomboid family shows homololgy to a Rhomboid-like protein. This family contains integral membrane proteins that arerelated to Drosophila rhomboid protein P20350. Members of this family are found in bacteria and eukaryotes. These proteins contain three strongly conserved histidines in the transmembrane regions that may be involved in the as yet unknown function of these proteins.; hypothetical protein 705411 4213717 ABO_0636 Alcanivorax borkumensis SK2 hypothetical protein YP_692356.1 704809 D 393595 CDS YP_692357.1 110833498 4213718 705383..707104 1 NC_008260.1 hypothetical protein, TMHMM: reporting 6 transmembrane helices; hypothetical protein 707104 4213718 ABO_0637 Alcanivorax borkumensis SK2 hypothetical protein YP_692357.1 705383 D 393595 CDS YP_692358.1 110833499 4211537 707175..708725 1 NC_008260.1 catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 708725 leuA 4211537 leuA Alcanivorax borkumensis SK2 2-isopropylmalate synthase YP_692358.1 707175 D 393595 CDS YP_692359.1 110833500 4213719 708835..709641 1 NC_008260.1 hypothetical protein 709641 4213719 ABO_0639 Alcanivorax borkumensis SK2 hypothetical protein YP_692359.1 708835 D 393595 CDS YP_692360.1 110833501 4213720 709622..710113 1 NC_008260.1 ribosomal-protein-alanine N-acetyltransferase (GNAT family) identified by match to PFAM protein family HMMPF00583 InterPro: GCN5-related N-acetyltransferase; Specificity unclear; ribosomal-protein-alanine N-acetyltransferase 710113 4213720 ABO_0640 Alcanivorax borkumensis SK2 ribosomal-protein-alanine N-acetyltransferase YP_692360.1 709622 D 393595 CDS YP_692361.1 110833502 4213721 complement(710421..710846) 1 NC_008260.1 hypothetical protein 710846 4213721 ABO_0641 Alcanivorax borkumensis SK2 hypothetical protein YP_692361.1 710421 R 393595 CDS YP_692362.1 110833503 4213722 711000..711335 1 NC_008260.1 hypothetical protein 711335 4213722 ABO_0642 Alcanivorax borkumensis SK2 hypothetical protein YP_692362.1 711000 D 393595 CDS YP_692363.1 110833504 4212278 711394..712983 1 NC_008260.1 identified by sequencesimilarity; InterPro: Peptide chain release factor 3; Hypothetical protein; peptide chain release factor 3 712983 prfC 4212278 prfC Alcanivorax borkumensis SK2 peptide chain release factor 3 YP_692363.1 711394 D 393595 CDS YP_692364.1 110833505 4213723 713033..713431 1 NC_008260.1 hypothetical protein 713431 4213723 ABO_0644 Alcanivorax borkumensis SK2 hypothetical protein YP_692364.1 713033 D 393595 CDS YP_692365.1 110833506 4213724 713450..713755 1 NC_008260.1 hypothetical protein 713755 4213724 ABO_0645 Alcanivorax borkumensis SK2 hypothetical protein YP_692365.1 713450 D 393595 CDS YP_692366.1 110833507 4213725 complement(713946..715382) 1 NC_008260.1 Hypothetical protein; hypothetical protein 715382 4213725 ABO_0646 Alcanivorax borkumensis SK2 hypothetical protein YP_692366.1 713946 R 393595 CDS YP_692367.1 110833508 4213031 complement(715672..717480) 1 NC_008260.1 identified by match to PFAM protein family HMMPF02801 InterPro: Beta-ketoacyl synthase; Family membership; 3-oxoacyl-ACP synthase 717480 fabB 4213031 fabB Alcanivorax borkumensis SK2 3-oxoacyl-ACP synthase YP_692367.1 715672 R 393595 CDS YP_692368.1 110833509 4211858 complement(717790..719079) 1 NC_008260.1 (3-ketoacyl-CoA thiolase) identified by sequencesimilarity; InterPro: Thiolase; Specificity unclear; acetyl-CoA C-acetyltransferase 719079 fadAx 4211858 fadAx Alcanivorax borkumensis SK2 acetyl-CoA C-acetyltransferase YP_692368.1 717790 R 393595 CDS YP_692369.1 110833510 4213638 719296..719883 1 NC_008260.1 SodB, superoxide dismutase identified by sequence similarity; Specificity unclear; superoxide dismutase 719883 sodB 4213638 sodB Alcanivorax borkumensis SK2 superoxide dismutase YP_692369.1 719296 D 393595 CDS YP_692370.1 110833511 4213316 720602..721465 1 NC_008260.1 hypothetical protein 721465 4213316 ABO_0650 Alcanivorax borkumensis SK2 hypothetical protein YP_692370.1 720602 D 393595 CDS YP_692371.1 110833512 4213317 721895..722389 1 NC_008260.1 hypothetical protein 722389 4213317 ABO_0651 Alcanivorax borkumensis SK2 hypothetical protein YP_692371.1 721895 D 393595 CDS YP_692372.1 110833513 4213318 complement(722691..723191) 1 NC_008260.1 hypothetical protein 723191 4213318 ABO_0652 Alcanivorax borkumensis SK2 hypothetical protein YP_692372.1 722691 R 393595 CDS YP_692373.1 110833514 4213319 complement(723364..723888) 1 NC_008260.1 hypothetical protein 723888 4213319 ABO_0653 Alcanivorax borkumensis SK2 hypothetical protein YP_692373.1 723364 R 393595 CDS YP_692374.1 110833515 4213320 complement(724031..725095) 1 NC_008260.1 hypothetical protein 725095 4213320 ABO_0654 Alcanivorax borkumensis SK2 hypothetical protein YP_692374.1 724031 R 393595 CDS YP_692375.1 110833516 4213321 complement(725052..726344) 1 NC_008260.1 identified by match to PFAM protein family HMMPF03781; hypothetical protein 726344 4213321 ABO_0655 Alcanivorax borkumensis SK2 hypothetical protein YP_692375.1 725052 R 393595 CDS YP_692376.1 110833517 4213322 726506..727276 1 NC_008260.1 3-hydroxyacyl-CoA dehydrogenase identified by sequencesimilarity; InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity; 3-hydroxyacyl-CoA dehydrogenase 727276 4213322 ABO_0656 Alcanivorax borkumensis SK2 3-hydroxyacyl-CoA dehydrogenase YP_692376.1 726506 D 393595 CDS YP_692377.1 110833518 4213323 complement(727364..728869) 1 NC_008260.1 (decarboxylase family protein) identified by sequencesimilarity; Family membership; decarboxylase family protein 728869 4213323 ABO_0657 Alcanivorax borkumensis SK2 decarboxylase family protein YP_692377.1 727364 R 393595 CDS YP_692378.1 110833519 4213324 729149..729364 1 NC_008260.1 hypothetical protein 729364 4213324 ABO_0658 Alcanivorax borkumensis SK2 hypothetical protein YP_692378.1 729149 D 393595 CDS YP_692379.1 110833520 4212219 complement(729534..730649) 1 NC_008260.1 (DNA-damage-inducible protein P) identified by sequence similarity; InterPro: UMUC family (DNA-repair); High confidence in function and specificity; DNA polymerase IV 730649 dinP 4212219 dinP Alcanivorax borkumensis SK2 DNA polymerase IV YP_692379.1 729534 R 393595 CDS YP_692380.1 110833521 4213325 730868..732436 1 NC_008260.1 oxidoreductase (acting on paired donors with incorporation of molecular oxygen with NADH or NADPH as one donor, and incorporation of one atom of oxygen) identified by sequence similarity; InterPro: Aromatic-ring hydroxylase (flavoprotein monooxygenase); Function unclear; oxidoreductase 732436 4213325 ABO_0660 Alcanivorax borkumensis SK2 oxidoreductase YP_692380.1 730868 D 393595 CDS YP_692381.1 110833522 4212569 complement(732515..733324) 1 NC_008260.1 rRNA large subunit methyltransferase A identified by match to PFAM protein family HMMPF01209 InterPro: SAM (and some other nucleotide) binding motif; High confidence in function and specificity; rRNA (guanine-N1-)-methyltransferase 733324 rrmA 4212569 rrmA Alcanivorax borkumensis SK2 rRNA (guanine-N1-)-methyltransferase YP_692381.1 732515 R 393595 CDS YP_692382.1 110833523 4213326 complement(733477..733851) 1 NC_008260.1 hypothetical protein 733851 4213326 ABO_0662 Alcanivorax borkumensis SK2 hypothetical protein YP_692382.1 733477 R 393595 CDS YP_692383.1 110833524 4213327 733926..734696 1 NC_008260.1 oxidoreductase (acting on the CH-OH group of donors with NAD+ or NADP+ as acceptor) identified by sequencesimilarity; InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; oxidoreductase 734696 4213327 ABO_0663 Alcanivorax borkumensis SK2 oxidoreductase YP_692383.1 733926 D 393595 CDS YP_692384.1 110833525 4213328 734718..735380 1 NC_008260.1 hypothetical protein 735380 4213328 ABO_0664 Alcanivorax borkumensis SK2 hypothetical protein YP_692384.1 734718 D 393595 CDS YP_692385.1 110833526 4213329 735942..736877 1 NC_008260.1 (transcriptional regulator AraC family) identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; High confidence in function and specificity; transcriptional regulator 736877 4213329 ABO_0665 Alcanivorax borkumensis SK2 transcriptional regulator YP_692385.1 735942 D 393595 CDS YP_692386.1 110833527 4213330 complement(736986..739427) 1 NC_008260.1 identified by sequence similarity; InterPro: HMGCR/Patched 5TM box; Function unclear; hypothetical protein 739427 4213330 ABO_0666 Alcanivorax borkumensis SK2 hypothetical protein YP_692386.1 736986 R 393595 CDS YP_692387.1 110833528 4213331 complement(739437..740453) 1 NC_008260.1 (BNR domain protein) identified by match to PFAM protein family HMMPF02012 InterPro: BNR repeat BNR repaets are short repeats that were found in glycosyl hydrolases as well as other extracellular proteins of unknown function.; Function unclear; BNR repeat-containing protein 740453 4213331 ABO_0667 Alcanivorax borkumensis SK2 BNR repeat-containing protein YP_692387.1 739437 R 393595 CDS YP_692388.1 110833529 4213332 complement(740457..741302) 1 NC_008260.1 hydrolase (acting on carbon-carbon bonds in ketonic substances) identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Family membership; hydrolase 741302 4213332 ABO_0668 Alcanivorax borkumensis SK2 hydrolase YP_692388.1 740457 R 393595 CDS YP_692389.1 110833530 4213333 complement(741344..742678) 1 NC_008260.1 hypothetical protein 742678 4213333 ABO_0669 Alcanivorax borkumensis SK2 hypothetical protein YP_692389.1 741344 R 393595 CDS YP_692390.1 110833531 4213334 complement(742682..743716) 1 NC_008260.1 oxidoreductase (acting on iron-sulfur proteins as donors with NAD+ or NADP+ as acceptor) identified by sequence similarity; InterPro: Oxidoreductase FAD and NAD(P)-binding domain; Family membership; oxidoreductase 743716 4213334 ABO_0670 Alcanivorax borkumensis SK2 oxidoreductase YP_692390.1 742682 R 393595 CDS YP_692391.1 110833532 4213335 complement(743720..744958) 1 NC_008260.1 oxidoreductase (acting on paired donors with incorporation of molecular oxygen with NADH or NADPH as one donor, and incorporation of one atom of oxygen) identified by match to PFAM protein family HMMPF00355 InterPro: Rieske iron-sulfur protein 2Fe-2S subunit; Family membership; oxidoreductase 744958 4213335 ABO_0671 Alcanivorax borkumensis SK2 oxidoreductase YP_692391.1 743720 R 393595 CDS YP_692392.1 110833533 4212668 complement(745009..746244) 1 NC_008260.1 oxidoreductase (acting on paired donors with incorporation of molecular oxygen with NADH or NADPH as one donor, and incorporation of one atom of oxygen) identified by match to PFAM protein family HMMPF00355 InterPro: Rieske iron-sulfur protein 2Fe-2S subunit; Family membership; oxidoreductase 746244 4212668 ABO_0672 Alcanivorax borkumensis SK2 oxidoreductase YP_692392.1 745009 R 393595 CDS YP_692393.1 110833534 4212669 complement(746295..747581) 1 NC_008260.1 hypothetical protein 747581 4212669 ABO_0673 Alcanivorax borkumensis SK2 hypothetical protein YP_692393.1 746295 R 393595 CDS YP_692394.1 110833535 4212670 complement(747638..749188) 1 NC_008260.1 hypothetical protein 749188 4212670 ABO_0674 Alcanivorax borkumensis SK2 hypothetical protein YP_692394.1 747638 R 393595 CDS YP_692395.1 110833536 4212671 749460..750158 1 NC_008260.1 transcriptional regulator, TetR family; Family membership; TetR family transcriptional regulator 750158 4212671 ABO_0675 Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_692395.1 749460 D 393595 CDS YP_692396.1 110833537 4212672 750341..751357 1 NC_008260.1 identified by match to PFAM protein family HMMPF00296 InterPro: Bacterial luciferase; hypothetical protein 751357 4212672 ABO_0676 Alcanivorax borkumensis SK2 hypothetical protein YP_692396.1 750341 D 393595 CDS YP_692397.1 110833538 4212673 complement(751502..753295) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Domain of unknown function DUF33; Family membership; acyltransferase 753295 4212673 ABO_0677 Alcanivorax borkumensis SK2 acyltransferase YP_692397.1 751502 R 393595 CDS YP_692398.1 110833539 4212674 complement(753341..755071) 1 NC_008260.1 InterPro: Serine proteases trypsin family; Family membership; Serine endopeptidase/trypsin-like serine proteinase family protein 755071 4212674 ABO_0678 Alcanivorax borkumensis SK2 Serine endopeptidase/trypsin-like serine proteinase family protein YP_692398.1 753341 R 393595 CDS YP_692399.1 110833540 4212675 complement(755127..756071) 1 NC_008260.1 hypothetical protein 756071 4212675 ABO_0679 Alcanivorax borkumensis SK2 hypothetical protein YP_692399.1 755127 R 393595 CDS YP_692400.1 110833541 4212270 756253..758919 1 NC_008260.1 catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 758919 ppc 4212270 ppc Alcanivorax borkumensis SK2 phosphoenolpyruvate carboxylase YP_692400.1 756253 D 393595 CDS YP_692401.1 110833542 4212676 complement(758937..759200) 1 NC_008260.1 Function unclear; hypothetical protein 759200 4212676 ABO_0681 Alcanivorax borkumensis SK2 hypothetical protein YP_692401.1 758937 R 393595 CDS YP_692402.1 110833543 4212677 759313..760185 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 760185 4212677 ABO_0682 Alcanivorax borkumensis SK2 hypothetical protein YP_692402.1 759313 D 393595 CDS YP_692403.1 110833544 4211393 760236..761021 1 NC_008260.1 (plsC) identified by match to TIGR protein family HMMTIGR00530 InterPro: Phospholipid and glycerol acyltransferase (from motifs_6.msf); Family membership; 1-acyl-sn-glycerol-3-phosphate acyltransferase 761021 plsC2 4211393 plsC2 Alcanivorax borkumensis SK2 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_692403.1 760236 D 393595 CDS YP_692404.1 110833545 4212678 761148..761714 1 NC_008260.1 translation elongation factor P identified by match to TIGR protein family HMMTIGR00038; Family membership; translation elongation factor P 761714 4212678 ABO_0684 Alcanivorax borkumensis SK2 translation elongation factor P YP_692404.1 761148 D 393595 CDS YP_692405.1 110833546 4212679 761714..762766 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 762766 4212679 ABO_0685 Alcanivorax borkumensis SK2 hypothetical protein YP_692405.1 761714 D 393595 CDS YP_692406.1 110833547 4212680 762757..763578 1 NC_008260.1 identified by sequencesimilarity; InterPro: Rhomboid family; hypothetical protein 763578 4212680 ABO_0686 Alcanivorax borkumensis SK2 hypothetical protein YP_692406.1 762757 D 393595 CDS YP_692407.1 110833548 4212681 763652..764503 1 NC_008260.1 hypothetical protein 764503 4212681 ABO_0687 Alcanivorax borkumensis SK2 hypothetical protein YP_692407.1 763652 D 393595 CDS YP_692408.1 110833549 4212205 764512..765501 1 NC_008260.1 (TRAP dicarboxylate transporter DctP subunit) identified by sequencesimilarity; Family membership; TRAP dicarboxylate transporter 765501 dctP 4212205 dctP Alcanivorax borkumensis SK2 TRAP dicarboxylate transporter YP_692408.1 764512 D 393595 CDS YP_692409.1 110833550 4212207 765498..766007 1 NC_008260.1 (TRAP-type C4-dicarboxylate transport system, small permease component) identified by sequence similarity; TMHMM reporting 4 transmembrane helices; High confidence in function and specificity; TRAP C4-dicarboxylate transporter 766007 dctQ 4212207 dctQ Alcanivorax borkumensis SK2 TRAP C4-dicarboxylate transporter YP_692409.1 765498 D 393595 CDS YP_692410.1 110833551 4213295 766004..767293 1 NC_008260.1 (TRAP dicarboxylate transporter DctM subunit ) identified by sequence similarity; InterPro: DedA family TMHMM reporting 11 transmembrane helices; Family membership; TRAP dicarboxylate transporter 767293 dctM 4213295 dctM Alcanivorax borkumensis SK2 TRAP dicarboxylate transporter YP_692410.1 766004 D 393595 CDS YP_692411.1 110833552 4212682 complement(767425..768183) 1 NC_008260.1 Function unclear; hypothetical protein 768183 4212682 ABO_0691 Alcanivorax borkumensis SK2 hypothetical protein YP_692411.1 767425 R 393595 CDS YP_692412.1 110833553 4212683 complement(768580..769185) 1 NC_008260.1 (acetyltransferase GNAT family) identified by match to TIGR protein family HMMTIGR01575 InterPro: GCN5-related N-acetyltransferase; hypothetical protein 769185 4212683 ABO_0692 Alcanivorax borkumensis SK2 hypothetical protein YP_692412.1 768580 R 393595 CDS YP_692413.1 110833554 4212684 complement(769185..769559) 1 NC_008260.1 hypothetical protein 769559 4212684 ABO_0693 Alcanivorax borkumensis SK2 hypothetical protein YP_692413.1 769185 R 393595 CDS YP_692414.1 110833555 4211811 complement(769814..772657) 1 NC_008260.1 (aconitate hydratase 1) identified by sequencesimilarity; InterPro: Aconitate hydratase N-terminal; High confidence in function and specificity; aconitate hydratase 772657 acnA 4211811 acnA Alcanivorax borkumensis SK2 aconitate hydratase YP_692414.1 769814 R 393595 CDS YP_692415.1 110833556 4212685 complement(772874..773371) 1 NC_008260.1 Region start changed from 773425 to 773371 (-54 bases); hypothetical protein 773371 4212685 ABO_0695 Alcanivorax borkumensis SK2 hypothetical protein YP_692415.1 772874 R 393595 CDS YP_692416.1 110833557 4211394 773587..774111 1 NC_008260.1 (plsC) identified by sequence similarity; InterPro: Phospholipid and glycerol acyltransferase (from motifs_6.msf); High confidence in function and specificity; 1-acyl-sn-glycerol-3-phosphate acyltransferase 774111 plsC3 4211394 plsC3 Alcanivorax borkumensis SK2 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_692416.1 773587 D 393595 CDS YP_692417.1 110833558 4211531 complement(775552..777504) 1 NC_008260.1 glutathione-regulated potassium-protonantiporter identifiedby sequence similarity; InterPro: Na+/H+ exchanger; High confidence in function and specificity; glutathione-regulated potassium-proton antiporter 777504 kefB 4211531 kefB Alcanivorax borkumensis SK2 glutathione-regulated potassium-proton antiporter YP_692417.1 775552 R 393595 CDS YP_692418.1 110833559 4212686 complement(777597..778385) 1 NC_008260.1 hypothetical protein 778385 4212686 ABO_0698 Alcanivorax borkumensis SK2 hypothetical protein YP_692418.1 777597 R 393595 CDS YP_692419.1 110833560 4213848 complement(778673..779614) 1 NC_008260.1 hypothetical protein 779614 4213848 ABO_0699 Alcanivorax borkumensis SK2 hypothetical protein YP_692419.1 778673 R 393595 CDS YP_692420.1 110833561 4213654 complement(779611..780318) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00345; Specificity unclear; type 1 pili usher pathway chaperone CsuC 780318 csuC 4213654 csuC Alcanivorax borkumensis SK2 type 1 pili usher pathway chaperone CsuC YP_692420.1 779611 R 393595 CDS YP_692421.1 110833562 4213655 complement(780334..782859) 1 NC_008260.1 identified by sequence similarity; InterPro: Fimbrial biogenesis outer membrane usher protein; Function unclear; type 1 pili usher protein CsuD 782859 csuD 4213655 csuD Alcanivorax borkumensis SK2 type 1 pili usher protein CsuD YP_692421.1 780334 R 393595 CDS YP_692422.1 110833563 4213849 complement(782859..783398) 1 NC_008260.1 hypothetical protein 783398 4213849 ABO_0702 Alcanivorax borkumensis SK2 hypothetical protein YP_692422.1 782859 R 393595 CDS YP_692423.1 110833564 4213850 complement(783774..785204) 1 NC_008260.1 Oxidoreductase (acting on the aldehyde or oxo group of donors with NAD+ or NADP+ as acceptor) protein identified by match to TIGR protein family HMMTIGR01722 InterPro: Aldehyde dehydrogenase family; Family membership; dehydrogenase 785204 4213850 ABO_0703 Alcanivorax borkumensis SK2 dehydrogenase YP_692423.1 783774 R 393595 CDS YP_692424.1 110833565 4211351 complement(785316..786956) 1 NC_008260.1 catalyzes the condensation of two pyruvates to form acetolactate, implicated in pH homeostasis via the acetoin-2,3-butanediol pathway or in valine biosynthesis; acetolactate synthase 786956 ilvB-2 4211351 ilvB-2 Alcanivorax borkumensis SK2 acetolactate synthase YP_692424.1 785316 R 393595 CDS YP_692425.1 110833566 4213851 787293..789050 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01416; hypothetical protein 789050 4213851 ABO_0705 Alcanivorax borkumensis SK2 hypothetical protein YP_692425.1 787293 D 393595 CDS YP_692426.1 110833567 4213852 complement(789108..789320) 1 NC_008260.1 hypothetical protein 789320 4213852 ABO_0706 Alcanivorax borkumensis SK2 hypothetical protein YP_692426.1 789108 R 393595 CDS YP_692427.1 110833568 4213853 complement(790034..790600) 1 NC_008260.1 hypothetical protein 790600 4213853 ABO_0707 Alcanivorax borkumensis SK2 hypothetical protein YP_692427.1 790034 R 393595 CDS YP_692428.1 110833569 4213854 790792..791445 1 NC_008260.1 oxidoreductase (acting on NADH or NADPH with a disulfide as acceptor) identified by sequence similarity; InterPro: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Family membership; oxidoreductase 791445 4213854 ABO_0708 Alcanivorax borkumensis SK2 oxidoreductase YP_692428.1 790792 D 393595 CDS YP_692429.1 110833570 4213855 complement(792297..794000) 1 NC_008260.1 (conserved hypothetical protein) identified by sequencesimilarity; hypothetical protein 794000 4213855 ABO_0709 Alcanivorax borkumensis SK2 hypothetical protein YP_692429.1 792297 R 393595 CDS YP_692430.1 110833571 4211670 complement(794169..795461) 1 NC_008260.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 795461 nrdB 4211670 nrdB Alcanivorax borkumensis SK2 ribonucleotide-diphosphate reductase subunit beta YP_692430.1 794169 R 393595 CDS YP_692431.1 110833572 4211669 complement(795606..798494) 1 NC_008260.1 Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 798494 nrdA 4211669 nrdA Alcanivorax borkumensis SK2 ribonucleotide-diphosphate reductase subunit alpha YP_692431.1 795606 R 393595 CDS YP_692432.1 110833573 4212630 799169..799891 1 NC_008260.1 identified by sequence similarity; InterPro: Response regulator receiver domain; High confidence in function and specificity; DNA-binding response regulator 799891 rstA 4212630 rstA Alcanivorax borkumensis SK2 DNA-binding response regulator YP_692432.1 799169 D 393595 CDS YP_692433.1 110833574 4212631 799937..801562 1 NC_008260.1 (sensor histidine kinase) identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; High confidence in function and specificity; sensor histidine kinase rstB 801562 rstB 4212631 rstB Alcanivorax borkumensis SK2 sensor histidine kinase rstB YP_692433.1 799937 D 393595 CDS YP_692434.1 110833575 4211193 801751..803244 1 NC_008260.1 identified by sequencesimilarity; InterPro: Carbohydrate kinase FGGY family; High confidence in function and specificity; glycerol kinase 803244 glpK 4211193 glpK Alcanivorax borkumensis SK2 glycerol kinase YP_692434.1 801751 D 393595 CDS YP_692435.1 110833576 4213856 803442..804545 1 NC_008260.1 identified by match to PFAM protein family HMMPF00990; Conserved hypothetical protein; diguanylate cyclase 804545 4213856 ABO_0715 Alcanivorax borkumensis SK2 diguanylate cyclase YP_692435.1 803442 D 393595 CDS YP_692436.1 110833577 4213857 804542..805645 1 NC_008260.1 GGDEF domain protein identified by sequencesimilarity; Conserved hypothetical protein; diguanylate cyclase 805645 4213857 ABO_0716 Alcanivorax borkumensis SK2 diguanylate cyclase YP_692436.1 804542 D 393595 CDS YP_692437.1 110833578 4213858 complement(805786..806835) 1 NC_008260.1 identified by sequence similarity and by match to PFAM protein family HMMPF0005; InterPro: AAA ATPase superfamily; Specificity unclear; ABC transporter ATP-binding protein 806835 4213858 ABO_0717 Alcanivorax borkumensis SK2 ABC transporter ATP-binding protein YP_692437.1 805786 R 393595 CDS YP_692438.1 110833579 4213480 complement(806901..807809) 1 NC_008260.1 catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase 807809 argF 4213480 argF Alcanivorax borkumensis SK2 ornithine carbamoyltransferase YP_692438.1 806901 R 393595 CDS YP_692439.1 110833580 4213479 complement(807806..809125) 1 NC_008260.1 identified by sequence similarity; InterPro: Aminotransferase class-III pyridoxal-phosphate; High confidence in function and specificity; acetylornithine aminotransferase 809125 argD 4213479 argD Alcanivorax borkumensis SK2 acetylornithine aminotransferase YP_692439.1 807806 R 393595 CDS YP_692440.1 110833581 4211342 809277..810770 1 NC_008260.1 (N-methylhydantoinase B, hydantoin utilization protein B, ) identified by sequence similarity; identified by match to PFAM protein family HMMPF02538 InterPro: Hydantoinase B/oxoprolinase; Function unclear; N-methylhydantoinase B 810770 hyuB 4211342 hyuB Alcanivorax borkumensis SK2 N-methylhydantoinase B YP_692440.1 809277 D 393595 CDS YP_692441.1 110833582 4211871 810858..813041 1 NC_008260.1 FecA-like outer membrane receptor identified by sequence similarity; High confidence in function and specificity; FecA-like outer membrane receptor 813041 fecA 4211871 fecA Alcanivorax borkumensis SK2 FecA-like outer membrane receptor YP_692441.1 810858 D 393595 CDS YP_692442.1 110833583 4211791 813207..813539 1 NC_008260.1 glutaredoxin-related protein; Conserved hypothetical protein; glutaredoxin-like protein 813539 ydhD 4211791 ydhD Alcanivorax borkumensis SK2 glutaredoxin-like protein YP_692442.1 813207 D 393595 CDS YP_692443.1 110833584 4213859 813876..814478 1 NC_008260.1 peroxiredoxin, antioxidant, AhpC/Tsa family, oxidoreductase (acting on NADH or NADPH with a disulfide as acceptor) identified by match to PFAM protein family HMMPF00578 InterPro: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Family membership; oxidoreductase 814478 4213859 ABO_0723 Alcanivorax borkumensis SK2 oxidoreductase YP_692443.1 813876 D 393595 CDS YP_692444.1 110833585 4212170 complement(814610..815296) 1 NC_008260.1 Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 815296 rnt 4212170 rnt Alcanivorax borkumensis SK2 ribonuclease T YP_692444.1 814610 R 393595 CDS YP_692445.1 110833586 4213481 815507..816730 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF00764 InterPro: Argininosuccinate synthase; High confidence in function and specificity; argininosuccinate synthase 816730 argG 4213481 argG Alcanivorax borkumensis SK2 argininosuccinate synthase YP_692445.1 815507 D 393595 CDS YP_692446.1 110833587 4211190 817224..817607 1 NC_008260.1 (lactoylglutathione lyase, methylglyoxalase, aldoketomutase, glyoxalase I, ketone-aldehyde mutase, S-D-lactoylglutathione methylglyoxal lyase) identified by sequence similarity; identified by match to PFAM protein family HMMPF00903 InterPro: Glyoxalase I; High confidence in function and specificity; lactoylglutathione lyase 817607 gloA 4211190 gloA Alcanivorax borkumensis SK2 lactoylglutathione lyase YP_692446.1 817224 D 393595 CDS YP_692447.1 110833588 4213860 817607..818065 1 NC_008260.1 hypothetical protein 818065 4213860 ABO_0727 Alcanivorax borkumensis SK2 hypothetical protein YP_692447.1 817607 D 393595 CDS YP_692448.1 110833589 4212046 818062..818970 1 NC_008260.1 identified by sequence similarity; InterPro: S6 modification enzyme RimK family protein; High confidence in function and specificity; ribosomal protein S6 modification protein 818970 rimK 4212046 rimK Alcanivorax borkumensis SK2 ribosomal protein S6 modification protein YP_692448.1 818062 D 393595 CDS YP_692449.1 110833590 4213861 819089..820147 1 NC_008260.1 (conserved hypothetical protein) identified by sequence similarity; deacylase 820147 4213861 ABO_0729 Alcanivorax borkumensis SK2 deacylase YP_692449.1 819089 D 393595 CDS YP_692450.1 110833591 4213640 820348..821553 1 NC_008260.1 (sopT; SAT) (Sulfate adenylatetransferase) (ATP-sulfurylase). identified by Glimmer2; InterPro: ATP-sulfurylase Pfam: ATP-sulfurylase; High confidence in function and specificity; sulfate adenylyltransferase 821553 sopT 4213640 sopT Alcanivorax borkumensis SK2 sulfate adenylyltransferase YP_692450.1 820348 D 393595 CDS YP_692451.1 110833592 4213862 complement(821717..822043) 1 NC_008260.1 hypothetical protein 822043 4213862 ABO_0731 Alcanivorax borkumensis SK2 hypothetical protein YP_692451.1 821717 R 393595 CDS YP_692452.1 110833593 4213863 822308..823213 1 NC_008260.1 Family membership; peptide-aspartate beta-dioxygenase 823213 4213863 ABO_0732 Alcanivorax borkumensis SK2 peptide-aspartate beta-dioxygenase YP_692452.1 822308 D 393595 CDS YP_692453.1 110833594 4213864 823648..824322 1 NC_008260.1 Region start changed from 823759 to 823648 (111 bases); hypothetical protein 824322 4213864 ABO_0733 Alcanivorax borkumensis SK2 hypothetical protein YP_692453.1 823648 D 393595 CDS YP_692454.1 110833595 4213865 complement(824413..825792) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01587 InterPro: DEAD/DEAH box helicase; Hypothetical protein; DEAD/DEAH box helicase 825792 4213865 ABO_0734 Alcanivorax borkumensis SK2 DEAD/DEAH box helicase YP_692454.1 824413 R 393595 CDS YP_692455.1 110833596 4212033 complement(826252..828393) 1 NC_008260.1 identified by sequencesimilarity; InterPro: ATP-dependent DNA helicase RecQ; High confidence in function and specificity; ATP-dependent DNA helicase RecQ 828393 recQ1 4212033 recQ1 Alcanivorax borkumensis SK2 ATP-dependent DNA helicase RecQ YP_692455.1 826252 R 393595 CDS YP_692456.1 110833597 4212459 828485..829636 1 NC_008260.1 chromate transporter identified by sequencesimilarity; InterPro: Chromate transporter; High confidence in function and specificity; chromate transporter 829636 chrA 4212459 chrA Alcanivorax borkumensis SK2 chromate transporter YP_692456.1 828485 D 393595 CDS YP_692457.1 110833598 4213866 complement(829739..830485) 1 NC_008260.1 ParA family protein identified by sequence similarity; InterPro: ParA family ATPase; Family membership; ParA family protein 830485 4213866 ABO_0737 Alcanivorax borkumensis SK2 ParA family protein YP_692457.1 829739 R 393595 CDS YP_692458.1 110833599 4213867 830800..831837 1 NC_008260.1 hypothetical protein 831837 4213867 ABO_0738 Alcanivorax borkumensis SK2 hypothetical protein YP_692458.1 830800 D 393595 CDS YP_692459.1 110833600 4211222 complement(831974..833674) 1 NC_008260.1 High confidence in function and specificity; prolyl-tRNA synthetase 833674 proS 4211222 proS Alcanivorax borkumensis SK2 prolyl-tRNA synthetase YP_692459.1 831974 R 393595 CDS YP_692460.1 110833601 4212378 833840..834247 1 NC_008260.1 Uncharacterized protein, possibly involved in aromatic compounds catabolism; hypothetical protein 834247 4212378 ABO_0740 Alcanivorax borkumensis SK2 hypothetical protein YP_692460.1 833840 D 393595 CDS YP_692461.1 110833602 4212379 complement(834352..837849) 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 837849 4212379 ABO_0741 Alcanivorax borkumensis SK2 hypothetical protein YP_692461.1 834352 R 393595 CDS YP_692462.1 110833603 4212380 complement(837846..839606) 1 NC_008260.1 identified by match to PFAM protein family HMMPF03561; hypothetical protein 839606 4212380 ABO_0742 Alcanivorax borkumensis SK2 hypothetical protein YP_692462.1 837846 R 393595 CDS YP_692463.1 110833604 4212381 complement(839675..840328) 1 NC_008260.1 identified by sequence similarity; InterPro: Response regulator receiver domain; Specificity unclear; DNA-binding response regulator 840328 4212381 ABO_0743 Alcanivorax borkumensis SK2 DNA-binding response regulator YP_692463.1 839675 R 393595 CDS YP_692464.1 110833605 4212382 complement(840325..841527) 1 NC_008260.1 hypothetical protein 841527 4212382 ABO_0744 Alcanivorax borkumensis SK2 hypothetical protein YP_692464.1 840325 R 393595 CDS YP_692465.1 110833606 4212383 complement(841663..842280) 1 NC_008260.1 hypothetical protein 842280 4212383 ABO_0745 Alcanivorax borkumensis SK2 hypothetical protein YP_692465.1 841663 R 393595 CDS YP_692466.1 110833607 4212384 complement(842292..843512) 1 NC_008260.1 hypothetical protein 843512 4212384 ABO_0746 Alcanivorax borkumensis SK2 hypothetical protein YP_692466.1 842292 R 393595 CDS YP_692467.1 110833608 4212385 complement(843707..844006) 1 NC_008260.1 hypothetical protein 844006 4212385 ABO_0747 Alcanivorax borkumensis SK2 hypothetical protein YP_692467.1 843707 R 393595 CDS YP_692468.1 110833609 4212386 complement(844143..844517) 1 NC_008260.1 InterPro: Bacterial histone-like DNA-binding protein; Family membership; DNA-binding protein 844517 4212386 ABO_0748 Alcanivorax borkumensis SK2 DNA-binding protein YP_692468.1 844143 R 393595 CDS YP_692469.1 110833610 4213839 844886..846649 1 NC_008260.1 identified by sequence similarity; InterPro: Aspartyl-tRNA synthetase bacterial type; High confidence in function and specificity; aspartyl-tRNA synthetase 846649 aspS 4213839 aspS Alcanivorax borkumensis SK2 aspartyl-tRNA synthetase YP_692469.1 844886 D 393595 CDS YP_692470.1 110833611 4212387 846743..847486 1 NC_008260.1 (conserved hypothetical protein TIGR01033) identified by match to TIGR protein family HMMTIGR01033 InterPro: Domain of unknown function DUF28; hypothetical protein 847486 4212387 ABO_0750 Alcanivorax borkumensis SK2 hypothetical protein YP_692470.1 846743 D 393595 CDS YP_692471.1 110833612 4212639 847735..848253 1 NC_008260.1 (crossover junction endodeoxyribonuclease RuvC) identified by match to TIGR protein family HMMTIGR00228 InterPro: Crossover junction endodeoxyribonuclease RuvC; High confidence in function and specificity; endonuclease RuvC 848253 ruvC 4212639 ruvC Alcanivorax borkumensis SK2 endonuclease RuvC YP_692471.1 847735 D 393595 CDS YP_692472.1 110833613 4212637 848360..848965 1 NC_008260.1 identified by match to PFAM protein family HMMPF02904 InterPro: Bacterial DNA recombination protein RuvA; High confidence in function and specificity; Holliday junction DNA helicase RuvA 848965 ruvA 4212637 ruvA Alcanivorax borkumensis SK2 Holliday junction DNA helicase RuvA YP_692472.1 848360 D 393595 CDS YP_692473.1 110833614 4212638 849076..850104 1 NC_008260.1 promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 850104 ruvB 4212638 ruvB Alcanivorax borkumensis SK2 Holliday junction DNA helicase RuvB YP_692473.1 849076 D 393595 CDS YP_692474.1 110833615 4212388 850097..850540 1 NC_008260.1 conserved hypothetical protein TIGR00051, has high similarity with predicted thioesterases of COG0824; hypothetical protein 850540 4212388 ABO_0754 Alcanivorax borkumensis SK2 hypothetical protein YP_692474.1 850097 D 393595 CDS YP_692475.1 110833616 4211916 850533..851219 1 NC_008260.1 identified by sequence similarity; InterPro: MotA/TolQ/ExbB proton channel family; High confidence in function and specificity; biopolymer transport protein TolQ 851219 tolQ 4211916 tolQ Alcanivorax borkumensis SK2 biopolymer transport protein TolQ YP_692475.1 850533 D 393595 CDS YP_692476.1 110833617 4211917 851222..851659 1 NC_008260.1 identified by sequence similarity; InterPro: Biopolymer transport protein ExbD/TolR; High confidence in function and specificity; biopolymer transport protein TolR 851659 tolR 4211917 tolR Alcanivorax borkumensis SK2 biopolymer transport protein TolR YP_692476.1 851222 D 393595 CDS YP_692477.1 110833618 4212389 851652..852428 1 NC_008260.1 conserved hypothetical protein, has certain similarity to proline-rich C-terminus of TolA (PA0971) of Pseudomonas aeruginosa PAO1; hypothetical protein 852428 4212389 ABO_0757 Alcanivorax borkumensis SK2 hypothetical protein YP_692477.1 851652 D 393595 CDS YP_692478.1 110833619 4211914 852425..853747 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; tolB protein 853747 tolB 4211914 tolB Alcanivorax borkumensis SK2 tolB protein YP_692478.1 852425 D 393595 CDS YP_692479.1 110833620 4212390 853792..854361 1 NC_008260.1 (OmpA family protein) identified by match to PFAM protein family HMMPF00691 InterPro: Bacterial outer membrane protein; Family membership; peptidogycan-associated lipoprotein 854361 4212390 ABO_0759 Alcanivorax borkumensis SK2 peptidogycan-associated lipoprotein YP_692479.1 853792 D 393595 CDS YP_692480.1 110833621 4212391 854365..855129 1 NC_008260.1 identified by sequence similarity; hypothetical protein 855129 4212391 ABO_0760 Alcanivorax borkumensis SK2 hypothetical protein YP_692480.1 854365 D 393595 CDS YP_692481.1 110833622 4212392 855224..855865 1 NC_008260.1 radical activating enzyme identified by sequencesimilarity; InterPro: Radical activating enzymes; Specificity unclear; radical activating enzyme 855865 4212392 ABO_0761 Alcanivorax borkumensis SK2 radical activating enzyme YP_692481.1 855224 D 393595 CDS YP_692482.1 110833623 4212393 855931..856614 1 NC_008260.1 (exsB) (exsB protein) identified by sequencesimilarity; InterPro: ExsB protein transcriptional regulatory protein; Function unclear; exoenzyme S synthesis protein B 856614 4212393 ABO_0762 Alcanivorax borkumensis SK2 exoenzyme S synthesis protein B YP_692482.1 855931 D 393595 CDS YP_692483.1 110833624 4212394 complement(856852..857256) 1 NC_008260.1 hypothetical protein 857256 4212394 ABO_0763 Alcanivorax borkumensis SK2 hypothetical protein YP_692483.1 856852 R 393595 CDS YP_692484.1 110833625 4212395 857457..858476 1 NC_008260.1 hypothetical protein 858476 4212395 ABO_0764 Alcanivorax borkumensis SK2 hypothetical protein YP_692484.1 857457 D 393595 CDS YP_692485.1 110833626 4212396 858473..859384 1 NC_008260.1 identified by match to PFAM protein family HMMPF00376. InterPro: Bacterial regulatory proteins MerR family; Family membership; MerR family transcriptional regulator 859384 4212396 ABO_0765 Alcanivorax borkumensis SK2 MerR family transcriptional regulator YP_692485.1 858473 D 393595 CDS YP_692486.1 110833627 4211615 859381..860835 1 NC_008260.1 Deoxyribodipyrimidine photolyase (DNA photolyase)(Photoreactivating enzyme). (deoxyribodipyrimidine photolyase) identified by sequencesimilarity; InterPro: DNA photolyase; High confidence in function and specificity; DNA photolyase 860835 phrB 4211615 phrB Alcanivorax borkumensis SK2 DNA photolyase YP_692486.1 859381 D 393595 CDS YP_692487.1 110833628 4212921 860892..862184 1 NC_008260.1 (conserved hypothetical protein) identified by match to PFAM protein family HMMPF01593 Reaction: RCH(2)NH(2) + H(2)O + O(2) = Rcho + NH(3) + H(2)O(2) Cofaktor: FAD; High confidence in function and specificity; amine-oxidase 862184 4212921 ABO_0767 Alcanivorax borkumensis SK2 amine-oxidase YP_692487.1 860892 D 393595 CDS YP_692488.1 110833629 4212922 862181..863002 1 NC_008260.1 hypothetical protein 863002 4212922 ABO_0768 Alcanivorax borkumensis SK2 hypothetical protein YP_692488.1 862181 D 393595 CDS YP_692489.1 110833630 4212977 863007..864275 1 NC_008260.1 identified by match to PFAM protein family HMMPF02353 InterPro: Cyclopropane-fatty-acyl-phospholipid synthase Reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid = S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid; High confidence in function and specificity; cyclopropane-fatty-acyl-phospholipid synthase 864275 cfa 4212977 cfa Alcanivorax borkumensis SK2 cyclopropane-fatty-acyl-phospholipid synthase YP_692489.1 863007 D 393595 CDS YP_692490.1 110833631 4211253 864441..865490 1 NC_008260.1 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 865490 nadA 4211253 nadA Alcanivorax borkumensis SK2 quinolinate synthetase YP_692490.1 864441 D 393595 CDS YP_692491.1 110833632 4212923 complement(865584..867017) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01435 InterPro: TPR repeat; hypothetical protein 867017 4212923 ABO_0771 Alcanivorax borkumensis SK2 hypothetical protein YP_692491.1 865584 R 393595 CDS YP_692492.1 110833633 4212924 867125..867406 1 NC_008260.1 hypothetical protein 867406 4212924 ABO_0772 Alcanivorax borkumensis SK2 hypothetical protein YP_692492.1 867125 D 393595 CDS YP_692493.1 110833634 4211316 867403..868497 1 NC_008260.1 permease PerM identified by sequence similarity; InterPro: Domain of unknown function DUF20; Specificity unclear; permease PerM 868497 perM 4211316 perM Alcanivorax borkumensis SK2 permease PerM YP_692493.1 867403 D 393595 CDS YP_692494.1 110833635 4212925 complement(868544..869020) 1 NC_008260.1 AhpC/TSA family protein identified by match to PFAM protein family HMMPF00578 InterPro: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Family membership; AhpC/TSA family protein 869020 4212925 ABO_0774 Alcanivorax borkumensis SK2 AhpC/TSA family protein YP_692494.1 868544 R 393595 CDS YP_692495.1 110833636 4212926 complement(869074..869631) 1 NC_008260.1 identified by sequence similarity; InterPro: ACT domain; Function unclear; glycine cleavage system transcriptional repressor 869631 4212926 ABO_0775 Alcanivorax borkumensis SK2 glycine cleavage system transcriptional repressor YP_692495.1 869074 R 393595 CDS YP_692496.1 110833637 4213286 869915..870799 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF00701 InterPro: Dihydrodipicolinate synthetase; High confidence in function and specificity; dihydrodipicolinate synthase 870799 dapA 4213286 dapA Alcanivorax borkumensis SK2 dihydrodipicolinate synthase YP_692496.1 869915 D 393595 CDS YP_692497.1 110833638 4212927 870796..871413 1 NC_008260.1 (lipoprotein ) identified by sequencesimilarity; hypothetical protein 871413 4212927 ABO_0777 Alcanivorax borkumensis SK2 hypothetical protein YP_692497.1 870796 D 393595 CDS YP_692498.1 110833639 4212928 871413..872186 1 NC_008260.1 identified by sequencesimilarity; InterPro: Metallo-beta-lactamase superfamily; Family membership; metallo-beta-lactamase family protein 872186 4212928 ABO_0778 Alcanivorax borkumensis SK2 metallo-beta-lactamase family protein YP_692498.1 871413 D 393595 CDS YP_692499.1 110833640 4211142 872213..872929 1 NC_008260.1 (phosphoribosylaminoimidazole-succinocarboxamidesyn thase) identified by sequence similarity; InterPro: SAICAR synthetase; High confidence in function and specificity; phosphoribosylaminoimidazole-succinocarboxamide synthase 872929 purC 4211142 purC Alcanivorax borkumensis SK2 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_692499.1 872213 D 393595 CDS YP_692500.1 110833641 4212929 873015..873248 1 NC_008260.1 hypothetical protein 873248 4212929 ABO_0780 Alcanivorax borkumensis SK2 hypothetical protein YP_692500.1 873015 D 393595 CDS YP_692501.1 110833642 4212930 complement(873972..874517) 1 NC_008260.1 hypothetical protein 874517 4212930 ABO_0781 Alcanivorax borkumensis SK2 hypothetical protein YP_692501.1 873972 R 393595 CDS YP_692502.1 110833643 4212931 874712..875407 1 NC_008260.1 identified by match to PFAM protein family HMMPF00392 InterPro: Bacterial regulatory proteins GntR family; Family membership; GntR family transcriptional regulator 875407 4212931 ABO_0782 Alcanivorax borkumensis SK2 GntR family transcriptional regulator YP_692502.1 874712 D 393595 CDS YP_692503.1 110833644 4212932 875545..876162 1 NC_008260.1 hypothetical protein 876162 4212932 ABO_0783 Alcanivorax borkumensis SK2 hypothetical protein YP_692503.1 875545 D 393595 CDS YP_692504.1 110833645 4212933 complement(876301..877704) 1 NC_008260.1 (periplasmic binding domain/transglycosylase SLTdomain fusion protein) identified by sequencesimilarity; InterPro: Bacterial extracellular solute-binding proteins family 3 Bacterial lytic transglycosylases degrade murein via cleavage of the beta-1,4- glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine, with the concomitant formation of a 1,6-anhydrobond in the muramic acid residue. The SLT domain shared by these proteins is involved in catalytic activity. The most conserved part of this domain contains the contains two conserved serines and a glutamate which form part of this active site signature; High confidence in function and specificity; ligand-binding/transglycosylase domain-containing protein 877704 4212933 ABO_0784 Alcanivorax borkumensis SK2 ligand-binding/transglycosylase domain-containing protein YP_692504.1 876301 R 393595 CDS YP_692505.1 110833646 4211148 878126..882031 1 NC_008260.1 catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase 882031 purL 4211148 purL Alcanivorax borkumensis SK2 phosphoribosylformylglycinamidine synthase YP_692505.1 878126 D 393595 CDS YP_692506.1 110833647 4212934 882430..883122 1 NC_008260.1 hypothetical protein 883122 4212934 ABO_0786 Alcanivorax borkumensis SK2 hypothetical protein YP_692506.1 882430 D 393595 CDS YP_692507.1 110833648 4212935 883223..883558 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 883558 4212935 ABO_0787 Alcanivorax borkumensis SK2 hypothetical protein YP_692507.1 883223 D 393595 CDS YP_692508.1 110833649 4212936 complement(883576..884133) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00293; Family membership; MutT/nudix family protein 884133 4212936 ABO_0788 Alcanivorax borkumensis SK2 MutT/nudix family protein YP_692508.1 883576 R 393595 CDS YP_692509.1 110833650 4212937 884460..885134 1 NC_008260.1 DNA-binding response regulator LuxR family identified by sequence similarity; InterPro: Bacterial regulatory protein LuxR family; Family membership; LuxR family transcriptional regulator 885134 4212937 ABO_0789 Alcanivorax borkumensis SK2 LuxR family transcriptional regulator YP_692509.1 884460 D 393595 CDS YP_692510.1 110833651 4212938 complement(885206..885490) 1 NC_008260.1 hypothetical protein 885490 4212938 ABO_0790 Alcanivorax borkumensis SK2 hypothetical protein YP_692510.1 885206 R 393595 CDS YP_692511.1 110833652 4212939 885920..886411 1 NC_008260.1 identified by match to PFAM protein family HMMPF00293 InterPro: NUDIX hydrolase MuT motif proteins shown to be enzymes have been proposed to degrade compounds that are either deleterious to the cell or are normal metabolites present in excessive concentrations; Family membership; MutT/nudix family protein 886411 4212939 ABO_0791 Alcanivorax borkumensis SK2 MutT/nudix family protein YP_692511.1 885920 D 393595 CDS YP_692512.1 110833653 4212940 886446..886982 1 NC_008260.1 identified by sequencesimilarity; InterPro: Bacterial transferase hexapeptide repeat; Family membership; anhydrase family 3 protein 886982 4212940 ABO_0792 Alcanivorax borkumensis SK2 anhydrase family 3 protein YP_692512.1 886446 D 393595 CDS YP_692513.1 110833654 4213907 886975..887184 1 NC_008260.1 hypothetical protein 887184 4213907 ABO_0793 Alcanivorax borkumensis SK2 hypothetical protein YP_692513.1 886975 D 393595 CDS YP_692514.1 110833655 4213908 887181..888110 1 NC_008260.1 identified by match to PFAM protein family HMMPF01734 InterPro: Uncharacterized protein family UPF0028; hypothetical protein 888110 4213908 ABO_0794 Alcanivorax borkumensis SK2 hypothetical protein YP_692514.1 887181 D 393595 CDS YP_692515.1 110833656 4213909 complement(888190..889452) 1 NC_008260.1 CBS domain protein identified by match to PFAM protein family HMMPF03471 contains the DUF 21 domain; Function unclear; hypothetical protein 889452 4213909 ABO_0795 Alcanivorax borkumensis SK2 hypothetical protein YP_692515.1 888190 R 393595 CDS YP_692516.1 110833657 4213910 complement(889628..890428) 1 NC_008260.1 identified by sequence similarity; Conserved hypothetical protein; hypothetical protein 890428 4213910 ABO_0796 Alcanivorax borkumensis SK2 hypothetical protein YP_692516.1 889628 R 393595 CDS YP_692517.1 110833658 4211872 890658..892079 1 NC_008260.1 identified by match to PFAM protein family HMMPF00448 InterPro: Signal recognition particle protein; High confidence in function and specificity; signal recognition particle protein Ffh 892079 ffh 4211872 ffh Alcanivorax borkumensis SK2 signal recognition particle protein Ffh YP_692517.1 890658 D 393595 CDS YP_692518.1 110833659 4212561 892458..892706 1 NC_008260.1 (ribosomal protein S16) identified by sequence similarity; InterPro: Ribosomal protein S16; High confidence in function and specificity; 30S ribosomal protein S16 892706 rpsP 4212561 rpsP Alcanivorax borkumensis SK2 30S ribosomal protein S16 YP_692518.1 892458 D 393595 CDS YP_692519.1 110833660 4212106 892706..893296 1 NC_008260.1 identified by sequencesimilarity; InterPro: RimM; High confidence in function and specificity; 16S rRNA-processing protein RimM 893296 rimM 4212106 rimM Alcanivorax borkumensis SK2 16S rRNA-processing protein RimM YP_692519.1 892706 D 393595 CDS YP_692520.1 110833661 4211924 893297..894094 1 NC_008260.1 identified by sequence similarity; InterPro: tRNA (guanine-N1-)-methyltransferase; High confidence in function and specificity; tRNA (guanine-N1)-methyltransferase 894094 trmD 4211924 trmD Alcanivorax borkumensis SK2 tRNA (guanine-N1)-methyltransferase YP_692520.1 893297 D 393595 CDS YP_692521.1 110833662 4212288 894105..894461 1 NC_008260.1 this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 894461 rplS 4212288 rplS Alcanivorax borkumensis SK2 50S ribosomal protein L19 YP_692521.1 894105 D 393595 CDS YP_692522.1 110833663 4213911 complement(894807..895061) 1 NC_008260.1 identified by match to PFAM protein family HMMPF04226; hypothetical protein 895061 4213911 ABO_0802 Alcanivorax borkumensis SK2 hypothetical protein YP_692522.1 894807 R 393595 CDS YP_692523.1 110833664 4211778 895247..896185 1 NC_008260.1 identified by sequence similarity; Homologous to Abo_2171; InterPro: Phage integrase; High confidence in function and specificity; integrase/recombinase XerD 896185 xerD 4211778 xerD Alcanivorax borkumensis SK2 integrase/recombinase XerD YP_692523.1 895247 D 393595 CDS YP_692524.1 110833665 4211408 896231..896974 1 NC_008260.1 (thiol:disulfide interchange protein DsbC) identified by sequence similarity; High confidence in function and specificity; protein disulfide-isomerase 896974 dsbC 4211408 dsbC Alcanivorax borkumensis SK2 protein disulfide-isomerase YP_692524.1 896231 D 393595 CDS YP_692525.1 110833666 4213912 897057..898286 1 NC_008260.1 (aminotransferase, ) identified by match to TIGR protein family HMMTIGR01141 and PFAM protein family HMMPF00155; InterPro: Aminotransferases class-I; Family membership; aminotransferase 898286 4213912 ABO_0805 Alcanivorax borkumensis SK2 aminotransferase YP_692525.1 897057 D 393595 CDS YP_692526.1 110833667 4211481 898329..899630 1 NC_008260.1 catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 899630 hom 4211481 hom Alcanivorax borkumensis SK2 homoserine dehydrogenase YP_692526.1 898329 D 393595 CDS YP_692527.1 110833668 4211940 899765..900847 1 NC_008260.1 catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 900847 thrC 4211940 thrC Alcanivorax borkumensis SK2 threonine synthase YP_692527.1 899765 D 393595 CDS YP_692528.1 110833669 4213913 901465..903033 1 NC_008260.1 (choline/carnitine/betaine transporter familyprotein) identified by match to PFAM protein family HMMPF02028 InterPro: BCCT transporter IPRO0060: These prokaryotic transport proteins belong to a family known as BCCT (for Betaine /Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contains 12 transmembrane regions and are energized by proton symport. They contains a conserved region with four tryptophans in their central region.; Specificity unclear; choline/carnitine/betaine transporter family protein 903033 4213913 ABO_0808 Alcanivorax borkumensis SK2 choline/carnitine/betaine transporter family protein YP_692528.1 901465 D 393595 CDS YP_692529.1 110833670 4213914 complement(903275..904534) 1 NC_008260.1 identified by sequence similarity; hypothetical protein 904534 4213914 ABO_0809 Alcanivorax borkumensis SK2 hypothetical protein YP_692529.1 903275 R 393595 CDS YP_692530.1 110833671 4213915 904794..905111 1 NC_008260.1 hypothetical protein 905111 4213915 ABO_0810 Alcanivorax borkumensis SK2 hypothetical protein YP_692530.1 904794 D 393595 CDS YP_692531.1 110833672 4213916 905161..905634 1 NC_008260.1 hypothetical protein 905634 4213916 ABO_0811 Alcanivorax borkumensis SK2 hypothetical protein YP_692531.1 905161 D 393595 CDS YP_692532.1 110833673 4213917 complement(905916..907124) 1 NC_008260.1 identified by match to PFAM protein family HMMPF02515 InterPro: CAIB/BAIF family; Family membership; CAIB/BAIF family protein 907124 4213917 ABO_0812 Alcanivorax borkumensis SK2 CAIB/BAIF family protein YP_692532.1 905916 R 393595 CDS YP_692533.1 110833674 4213644 907327..908019 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00186 InterPro: tRNA/rRNA methyltransferase; Family membership; RNA methyltransferase 908019 spoU 4213644 spoU Alcanivorax borkumensis SK2 RNA methyltransferase YP_692533.1 907327 D 393595 CDS YP_692534.1 110833675 4213918 908399..909103 1 NC_008260.1 hypothetical protein 909103 4213918 ABO_0814 Alcanivorax borkumensis SK2 hypothetical protein YP_692534.1 908399 D 393595 CDS YP_692535.1 110833676 4213919 909252..910655 1 NC_008260.1 serine endopeptidase identified by sequence similarity; InterPro: Serine proteases trypsin family; Specificity unclear; serine protease 910655 4213919 ABO_0815 Alcanivorax borkumensis SK2 serine protease YP_692535.1 909252 D 393595 CDS YP_692536.1 110833677 4213920 911043..911357 1 NC_008260.1 (trx-1) (thioredoxin) identified by match to PFAM protein family HMMPF00085 InterPro: Thioredoxin; High confidence in function and specificity; thioredoxin 911357 4213920 ABO_0816 Alcanivorax borkumensis SK2 thioredoxin YP_692536.1 911043 D 393595 CDS YP_692537.1 110833678 4213921 complement(911384..912469) 1 NC_008260.1 (alcohol dehydrogenase zinc-containing) identified by sequencesimilarity; Family membership; zinc-containing alcohol dehydrogenase 912469 4213921 ABO_0817 Alcanivorax borkumensis SK2 zinc-containing alcohol dehydrogenase YP_692537.1 911384 R 393595 CDS YP_692538.1 110833679 4213922 912534..912956 1 NC_008260.1 hypothetical protein 912956 4213922 ABO_0818 Alcanivorax borkumensis SK2 hypothetical protein YP_692538.1 912534 D 393595 CDS YP_692539.1 110833680 4213923 complement(913070..913465) 1 NC_008260.1 hypothetical protein 913465 4213923 ABO_0819 Alcanivorax borkumensis SK2 hypothetical protein YP_692539.1 913070 R 393595 CDS YP_692540.1 110833681 4211151 complement(913491..914684) 1 NC_008260.1 (phosphoribosylglycinamide formyltransferase 2) identified by sequencesimilarity; InterPro: ATP-grasp domain; Family membership; formyltransferase 914684 purT 4211151 purT Alcanivorax borkumensis SK2 formyltransferase YP_692540.1 913491 R 393595 CDS YP_692541.1 110833682 4213924 914846..915304 1 NC_008260.1 (Cytidine and deoxycytidylate deaminase) identified by sequence similarity; InterPro: Cytidine and deoxycytidylate deaminase zinc-binding region; Family membership; cytidine/deoxycytidylate deaminase family protein 915304 4213924 ABO_0821 Alcanivorax borkumensis SK2 cytidine/deoxycytidylate deaminase family protein YP_692541.1 914846 D 393595 CDS YP_692542.1 110833683 4211632 complement(915445..916599) 1 NC_008260.1 (outer membrane protein OprF; OmpA domain protein) identified by sequence similarity; InterPro: Bacterial outer membrane protein; High confidence in function and specificity; outer membrane protein OprF 916599 oprF 4211632 oprF Alcanivorax borkumensis SK2 outer membrane protein OprF YP_692542.1 915445 R 393595 CDS YP_692543.1 110833684 4213925 complement(916776..917633) 1 NC_008260.1 hypothetical protein 917633 4213925 ABO_0823 Alcanivorax borkumensis SK2 hypothetical protein YP_692543.1 916776 R 393595 CDS YP_692544.1 110833685 4212941 complement(917722..918246) 1 NC_008260.1 hypothetical protein 918246 4212941 ABO_0824 Alcanivorax borkumensis SK2 hypothetical protein YP_692544.1 917722 R 393595 CDS YP_692545.1 110833686 4212942 complement(918228..918764) 1 NC_008260.1 hypothetical protein 918764 4212942 ABO_0825 Alcanivorax borkumensis SK2 hypothetical protein YP_692545.1 918228 R 393595 CDS YP_692546.1 110833687 4212943 918936..919472 1 NC_008260.1 hypothetical protein 919472 4212943 ABO_0826 Alcanivorax borkumensis SK2 hypothetical protein YP_692546.1 918936 D 393595 CDS YP_692547.1 110833688 4212944 919465..920238 1 NC_008260.1 hypothetical protein 920238 4212944 ABO_0827 Alcanivorax borkumensis SK2 hypothetical protein YP_692547.1 919465 D 393595 CDS YP_692548.1 110833689 4212945 920235..921251 1 NC_008260.1 hypothetical protein 921251 4212945 ABO_0828 Alcanivorax borkumensis SK2 hypothetical protein YP_692548.1 920235 D 393595 CDS YP_692549.1 110833690 4212347 921301..922560 1 NC_008260.1 identified by sequencesimilarity; High confidence in function and specificity; ColS 922560 colS 4212347 colS Alcanivorax borkumensis SK2 ColS YP_692549.1 921301 D 393595 CDS YP_692550.1 110833691 4212946 complement(922591..923355) 1 NC_008260.1 hypothetical protein 923355 4212946 ABO_0830 Alcanivorax borkumensis SK2 hypothetical protein YP_692550.1 922591 R 393595 CDS YP_692551.1 110833692 4212346 complement(923530..924228) 1 NC_008260.1 (DNA-binding heavy metal response regulator, ) identified by match to TIGR protein family HMMTIGR01387 InterPro: Response regulator receiver domain; Specificity unclear; DNA-binding heavy metal response regulator 924228 colR 4212346 colR Alcanivorax borkumensis SK2 DNA-binding heavy metal response regulator YP_692551.1 923530 R 393595 CDS YP_692552.1 110833693 4212947 complement(924391..925383) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00165 InterPro: ThiJ/PfpI family; Specificity unclear; AraC family transcriptional regulator 925383 4212947 ABO_0832 Alcanivorax borkumensis SK2 AraC family transcriptional regulator YP_692552.1 924391 R 393595 CDS YP_692553.1 110833694 4212948 925476..927263 1 NC_008260.1 acyl-CoA dehydrogenase family protein identified by match to PFAM protein family HMMPF00441 InterPro: Acyl-CoA dehydrogenase; Specificity unclear; acyl-CoA dehydrogenase 927263 4212948 ABO_0833 Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_692553.1 925476 D 393595 CDS YP_692554.1 110833695 4213032 complement(927769..928983) 1 NC_008260.1 (3-oxoacyl-(acyl-carrier-protein) synthase I) identified by match to PFAM protein family HMMPF02801 InterPro: Beta-ketoacyl synthase; High confidence in function and specificity; 3-oxoacyl-ACP synthase 928983 fabB 4213032 fabB Alcanivorax borkumensis SK2 3-oxoacyl-ACP synthase YP_692554.1 927769 R 393595 CDS YP_692555.1 110833696 4213030 complement(928993..929520) 1 NC_008260.1 catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase 929520 fabA 4213030 fabA Alcanivorax borkumensis SK2 3-hydroxydecanoyl-ACP dehydratase YP_692555.1 928993 R 393595 CDS YP_692556.1 110833697 4212969 929908..931878 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00353 InterPro: Cytochrome c-type biogenesis protein (CcmF); High confidence in function and specificity; cytochrome c-type biogenesis protein CcmF 931878 ccmF 4212969 ccmF Alcanivorax borkumensis SK2 cytochrome c-type biogenesis protein CcmF YP_692556.1 929908 D 393595 CDS YP_692557.1 110833698 4211411 931868..932416 1 NC_008260.1 identified by sequence similarity; InterPro: Periplasmic protein thiol:disulfide oxidoreductase DsbE; High confidence in function and specificity; thiol:disulfide interchange protein DsbE 932416 dsbE 4211411 dsbE Alcanivorax borkumensis SK2 thiol:disulfide interchange protein DsbE YP_692557.1 931868 D 393595 CDS YP_692558.1 110833699 4212970 932416..932853 1 NC_008260.1 Family membership; cytochrome C biogenesis protein 932853 ccmH 4212970 ccmH Alcanivorax borkumensis SK2 cytochrome C biogenesis protein YP_692558.1 932416 D 393595 CDS YP_692559.1 110833700 4212949 932850..933875 1 NC_008260.1 Family membership; cytochrome c-type biogenesis protein 933875 4212949 ABO_0839 Alcanivorax borkumensis SK2 cytochrome c-type biogenesis protein YP_692559.1 932850 D 393595 CDS YP_692560.1 110833701 4211286 934160..934816 1 NC_008260.1 essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 934816 adk 4211286 adk Alcanivorax borkumensis SK2 adenylate kinase YP_692560.1 934160 D 393595 CDS YP_692561.1 110833702 4212950 936343..937068 1 NC_008260.1 hypothetical protein 937068 4212950 ABO_0841 Alcanivorax borkumensis SK2 hypothetical protein YP_692561.1 936343 D 393595 CDS YP_692562.1 110833703 4212131 937709..938188 1 NC_008260.1 identified by sequence similarity; InterPro: Bacterioferritin; High confidence in function and specificity; bacterioferritin 938188 bfr 4212131 bfr Alcanivorax borkumensis SK2 bacterioferritin YP_692562.1 937709 D 393595 CDS YP_692563.1 110833704 4211624 938772..939017 1 NC_008260.1 OadG, oxaloacetate decarboxylase, gamma chain; Family membership; oxaloacetate decarboxylase subunit gamma 939017 oadG 4211624 oadG Alcanivorax borkumensis SK2 oxaloacetate decarboxylase subunit gamma YP_692563.1 938772 D 393595 CDS YP_692564.1 110833705 4211622 939033..940832 1 NC_008260.1 catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 940832 oadA 4211622 oadA Alcanivorax borkumensis SK2 oxaloacetate decarboxylase YP_692564.1 939033 D 393595 CDS YP_692565.1 110833706 4211623 940825..942123 1 NC_008260.1 Oxaloacetate decarboxylase beta chain; High confidence in function and specificity; oxaloacetate decarboxylase subunit beta 942123 oadB 4211623 oadB Alcanivorax borkumensis SK2 oxaloacetate decarboxylase subunit beta YP_692565.1 940825 D 393595 CDS YP_692566.1 110833707 4212951 942139..943236 1 NC_008260.1 (conserved hypothetical protein) identified by sequencesimilarity; hypothetical protein 943236 4212951 ABO_0846 Alcanivorax borkumensis SK2 hypothetical protein YP_692566.1 942139 D 393595 CDS YP_692567.1 110833708 4212952 943765..944256 1 NC_008260.1 hypothetical protein 944256 4212952 ABO_0847 Alcanivorax borkumensis SK2 hypothetical protein YP_692567.1 943765 D 393595 CDS YP_692568.1 110833709 4212953 944357..944890 1 NC_008260.1 hypothetical protein 944890 4212953 ABO_0848 Alcanivorax borkumensis SK2 hypothetical protein YP_692568.1 944357 D 393595 CDS YP_692569.1 110833710 4212954 944981..945796 1 NC_008260.1 hypothetical protein 945796 4212954 ABO_0849 Alcanivorax borkumensis SK2 hypothetical protein YP_692569.1 944981 D 393595 CDS YP_692570.1 110833711 4212955 complement(946165..947319) 1 NC_008260.1 membrane protein identified by match to PFAM protein family HMMPF04306 InterPro: General substrate transporters; Function unclear; hypothetical protein 947319 4212955 ABO_0850 Alcanivorax borkumensis SK2 hypothetical protein YP_692570.1 946165 R 393595 CDS YP_692571.1 110833712 4211672 947839..949200 1 NC_008260.1 Function unclear; nitrate transport ATP-binding protein 949200 nrtC 4211672 nrtC Alcanivorax borkumensis SK2 nitrate transport ATP-binding protein YP_692571.1 947839 D 393595 CDS YP_692572.1 110833713 4211671 949230..950231 1 NC_008260.1 identified by sequencesimilarity; InterPro: Binding-protein-dependent transport systems inner membrane component; Family membership; nitrate ABC transporter permease 950231 nrtB 4211671 nrtB Alcanivorax borkumensis SK2 nitrate ABC transporter permease YP_692572.1 949230 D 393595 CDS YP_692573.1 110833714 4211424 950248..951087 1 NC_008260.1 High confidence in function and specificity; nitrate transporter ATPase NasD 951087 nasD 4211424 nasD Alcanivorax borkumensis SK2 nitrate transporter ATPase NasD YP_692573.1 950248 D 393595 CDS YP_692574.1 110833715 4212956 951208..952392 1 NC_008260.1 hypothetical protein 952392 4212956 ABO_0854 Alcanivorax borkumensis SK2 hypothetical protein YP_692574.1 951208 D 393595 CDS YP_692575.1 110833716 4211434 952436..954415 1 NC_008260.1 (nitrite reductase) identified by sequence similarity; InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; High confidence in function and specificity; nitrite reductase 954415 nirB1 4211434 nirB1 Alcanivorax borkumensis SK2 nitrite reductase YP_692575.1 952436 D 393595 CDS YP_692576.1 110833717 4212957 954431..955768 1 NC_008260.1 hypothetical protein 955768 4212957 ABO_0856 Alcanivorax borkumensis SK2 hypothetical protein YP_692576.1 954431 D 393595 CDS YP_692577.1 110833718 4212958 955811..956407 1 NC_008260.1 hypothetical protein 956407 4212958 ABO_0857 Alcanivorax borkumensis SK2 hypothetical protein YP_692577.1 955811 D 393595 CDS YP_692578.1 110833719 4212959 956514..956921 1 NC_008260.1 oxidoreductase (acting on the CH-NH group of donors with NAD+ or NADP+ as acceptor (flavohemoprotein)) identified by sequence similarity; InterPro: Globin; Function unclear; oxidoreductase 956921 4212959 ABO_0858 Alcanivorax borkumensis SK2 oxidoreductase YP_692578.1 956514 D 393595 CDS YP_692579.1 110833720 4211426 957040..957690 1 NC_008260.1 identified by sequence similarity; InterPro: Response regulator receiver domain; High confidence in function and specificity; nitrogen assimilation response regulatory protein 957690 nasT 4211426 nasT Alcanivorax borkumensis SK2 nitrogen assimilation response regulatory protein YP_692579.1 957040 D 393595 CDS YP_692580.1 110833721 4211425 957870..959048 1 NC_008260.1 identified by sequence similarity; Hypothetical protein; nitrate-binding protein NasS 959048 nasS 4211425 nasS Alcanivorax borkumensis SK2 nitrate-binding protein NasS YP_692580.1 957870 D 393595 CDS YP_692581.1 110833722 4211501 complement(959196..961487) 1 NC_008260.1 catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 961487 metE 4211501 metE Alcanivorax borkumensis SK2 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase YP_692581.1 959196 R 393595 CDS YP_692582.1 110833723 4211505 961716..962639 1 NC_008260.1 (metR-1) identified by sequence similarity; InterPro: Bacterial regulatory protein LysR family; High confidence in function and specificity; transcriptional activator MetR 962639 metR 4211505 metR Alcanivorax borkumensis SK2 transcriptional activator MetR YP_692582.1 961716 D 393595 CDS YP_692583.1 110833724 4212960 complement(962704..963057) 1 NC_008260.1 hypothetical protein 963057 4212960 ABO_0863 Alcanivorax borkumensis SK2 hypothetical protein YP_692583.1 962704 R 393595 CDS YP_692584.1 110833725 4212687 complement(963129..963593) 1 NC_008260.1 hypothetical protein 963593 4212687 ABO_0864 Alcanivorax borkumensis SK2 hypothetical protein YP_692584.1 963129 R 393595 CDS YP_692585.1 110833726 4212688 complement(964068..964661) 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 964661 4212688 ABO_0865 Alcanivorax borkumensis SK2 hypothetical protein YP_692585.1 964068 R 393595 CDS YP_692586.1 110833727 4212689 complement(964664..965287) 1 NC_008260.1 hypothetical protein 965287 4212689 ABO_0866 Alcanivorax borkumensis SK2 hypothetical protein YP_692586.1 964664 R 393595 CDS YP_692587.1 110833728 4212690 complement(965325..965792) 1 NC_008260.1 (GGDEF family protein) identified by match to PFAM protein family HMMPF00990; hypothetical protein 965792 4212690 ABO_0867 Alcanivorax borkumensis SK2 hypothetical protein YP_692587.1 965325 R 393595 CDS YP_692588.1 110833729 4212691 complement(965776..966186) 1 NC_008260.1 hypothetical protein 966186 4212691 ABO_0868 Alcanivorax borkumensis SK2 hypothetical protein YP_692588.1 965776 R 393595 CDS YP_692589.1 110833730 4212142 complement(966183..966755) 1 NC_008260.1 Function unclear; outer membrane lipoprotein Blc 966755 blc 4212142 blc Alcanivorax borkumensis SK2 outer membrane lipoprotein Blc YP_692589.1 966183 R 393595 CDS YP_692590.1 110833731 4212964 966863..967516 1 NC_008260.1 Heme exporter protein A (Cytochrome c-type biogenesis ATP-binding protein ccmA). (aapP) (general amino acid ABC transporter ATP-bindingprotein) identified by match to TIGR protein family HMMTIGR00968; High confidence in function and specificity; Heme exporter protein A 967516 ccmA 4212964 ccmA Alcanivorax borkumensis SK2 Heme exporter protein A YP_692590.1 966863 D 393595 CDS YP_692591.1 110833732 4212965 967513..968181 1 NC_008260.1 Heme exporter protein B (Cytochrome c-type biogenesis protein ccmB). (heme ABC export system permease protein CcmB) identified by match to TIGR protein family HMMTIGR01190; High confidence in function and specificity; Heme exporter protein B 968181 ccmB 4212965 ccmB Alcanivorax borkumensis SK2 Heme exporter protein B YP_692591.1 967513 D 393595 CDS YP_692592.1 110833733 4212966 968233..968991 1 NC_008260.1 Heme exporter protein C (Cytochrome c-type biogenesis protein ccmC). (heme ABC export system permease protein CcmC) identified by sequencesimilarity; InterPro: Cytochrome c assembly protein; High confidence in function and specificity; Heme exporter protein C 968991 ccmC 4212966 ccmC Alcanivorax borkumensis SK2 Heme exporter protein C YP_692592.1 968233 D 393595 CDS YP_692593.1 110833734 4212967 968993..969247 1 NC_008260.1 (cytochrome c-type biogenesis protein CcmD) identified by sequence similarity; High confidence in function and specificity; heme exporter protein D 969247 ccmD 4212967 ccmD Alcanivorax borkumensis SK2 heme exporter protein D YP_692593.1 968993 D 393595 CDS YP_692594.1 110833735 4212968 969231..969713 1 NC_008260.1 identified by sequence similarity; InterPro: CcmE/CycJ proteins; High confidence in function and specificity; cytochrome c-type biogenesis protein CcmE 969713 ccmE 4212968 ccmE Alcanivorax borkumensis SK2 cytochrome c-type biogenesis protein CcmE YP_692594.1 969231 D 393595 CDS YP_692595.1 110833736 4212692 969834..971321 1 NC_008260.1 ribosomal protein S6 modification protein-relatedprotein identified by sequence similarity; Function unclear; ribosomal protein S6 modification protein-like protein 971321 4212692 ABO_0875 Alcanivorax borkumensis SK2 ribosomal protein S6 modification protein-like protein YP_692595.1 969834 D 393595 CDS YP_692596.1 110833737 4212693 complement(971547..972200) 1 NC_008260.1 transferase (transferring alkyl or aryl groups, other than methyl groups) family protein identified by match to PFAM protein family HMMPF00043 InterPro: Glutathione S-transferase C terminus; Specificity unclear; transferase 972200 4212693 ABO_0876 Alcanivorax borkumensis SK2 transferase YP_692596.1 971547 R 393595 CDS YP_692597.1 110833738 4212776 972953..973624 1 NC_008260.1 identified by sequence similarity; Family membership; phosphoglycerate mutase 973624 gpmA 4212776 gpmA Alcanivorax borkumensis SK2 phosphoglycerate mutase YP_692597.1 972953 D 393595 CDS YP_692598.1 110833739 4212694 973663..974607 1 NC_008260.1 (ATP-binding cassette (ABC) transporter, permease protein, ) identified by match to PFAM protein family HMMPF00005 InterPro: AAA ATPase superfamily; Family membership; ABC transporter ATP-binding protein 974607 4212694 ABO_0878 Alcanivorax borkumensis SK2 ABC transporter ATP-binding protein YP_692598.1 973663 D 393595 CDS YP_692599.1 110833740 4212695 974604..975377 1 NC_008260.1 (ABC transporter, permease protein, ) identified by match to PFAM protein family HMMPF04306 InterPro: ABC 2 transport system integral membrane protein; Family membership; ABC transporter permease 975377 4212695 ABO_0879 Alcanivorax borkumensis SK2 ABC transporter permease YP_692599.1 974604 D 393595 CDS YP_692600.1 110833741 4212696 975449..976273 1 NC_008260.1 catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 976273 queF 4212696 queF Alcanivorax borkumensis SK2 7-cyano-7-deazaguanine reductase YP_692600.1 975449 D 393595 CDS YP_692601.1 110833742 4211789 complement(976426..977904) 1 NC_008260.1 ( p-aminobenzoyl-glutamate transporter) identified by match to PFAM protein family ABG_transport; Family membership; transporter 977904 ydaH 4211789 ydaH Alcanivorax borkumensis SK2 transporter YP_692601.1 976426 R 393595 CDS YP_692602.1 110833743 4212697 complement(978300..978764) 1 NC_008260.1 hypothetical protein 978764 4212697 ABO_0882 Alcanivorax borkumensis SK2 hypothetical protein YP_692602.1 978300 R 393595 CDS YP_692603.1 110833744 4212698 complement(978736..979194) 1 NC_008260.1 hypothetical protein 979194 4212698 ABO_0883 Alcanivorax borkumensis SK2 hypothetical protein YP_692603.1 978736 R 393595 CDS YP_692604.1 110833745 4212699 complement(979191..979748) 1 NC_008260.1 nitroreductase family protein identified by match to PFAM protein family HMMPF00881 InterPro: Nitroreductase family; Family membership; nitroreductase family protein 979748 4212699 ABO_0884 Alcanivorax borkumensis SK2 nitroreductase family protein YP_692604.1 979191 R 393595 CDS YP_692605.1 110833746 4212700 979919..981463 1 NC_008260.1 adenylate cyclase PA3217; Specificity unclear; adenylate cyclase 981463 4212700 ABO_0885 Alcanivorax borkumensis SK2 adenylate cyclase YP_692605.1 979919 D 393595 CDS YP_692606.1 110833747 4212701 complement(981532..983127) 1 NC_008260.1 similar to: SP:Q00593 SP:P17444 and SP:P54223; identified by sequence similarity; identified by match to PFAM protein families HMMPF00732 and HMMPF05199; InterPro: Glucose-methanol-choline (GMC) oxidoreductase; Specificity unclear; alcohol/choline dehydrogenase 983127 4212701 ABO_0886 Alcanivorax borkumensis SK2 alcohol/choline dehydrogenase YP_692606.1 981532 R 393595 CDS YP_692607.1 110833748 4212702 983183..983821 1 NC_008260.1 hypothetical protein 983821 4212702 ABO_0887 Alcanivorax borkumensis SK2 hypothetical protein YP_692607.1 983183 D 393595 CDS YP_692608.1 110833749 4212703 984019..984729 1 NC_008260.1 identified by sequencesimilarity; InterPro: HNH nuclease; hypothetical protein 984729 4212703 ABO_0888 Alcanivorax borkumensis SK2 hypothetical protein YP_692608.1 984019 D 393595 CDS YP_692609.1 110833750 4212704 984773..987643 1 NC_008260.1 (hypothetical protein) identified by match to PFAM protein family HMMPF04097; hypothetical protein 987643 4212704 ABO_0889 Alcanivorax borkumensis SK2 hypothetical protein YP_692609.1 984773 D 393595 CDS YP_692610.1 110833751 4212705 987606..988484 1 NC_008260.1 hypothetical protein 988484 4212705 ABO_0890 Alcanivorax borkumensis SK2 hypothetical protein YP_692610.1 987606 D 393595 CDS YP_692611.1 110833752 4212804 988481..991261 1 NC_008260.1 hypothetical protein 991261 4212804 ABO_0891 Alcanivorax borkumensis SK2 hypothetical protein YP_692611.1 988481 D 393595 CDS YP_692612.1 110833753 4212805 991273..991797 1 NC_008260.1 hypothetical protein 991797 4212805 ABO_0892 Alcanivorax borkumensis SK2 hypothetical protein YP_692612.1 991273 D 393595 CDS YP_692613.1 110833754 4212806 991797..993131 1 NC_008260.1 hypothetical protein 993131 4212806 ABO_0893 Alcanivorax borkumensis SK2 hypothetical protein YP_692613.1 991797 D 393595 CDS YP_692614.1 110833755 4212807 993124..994134 1 NC_008260.1 hypothetical protein 994134 4212807 ABO_0894 Alcanivorax borkumensis SK2 hypothetical protein YP_692614.1 993124 D 393595 CDS YP_692615.1 110833756 4212808 994112..995668 1 NC_008260.1 InterPro: Glycosyl transferases group 1; hypothetical protein 995668 4212808 ABO_0895 Alcanivorax borkumensis SK2 hypothetical protein YP_692615.1 994112 D 393595 CDS YP_692616.1 110833757 4212809 995668..997038 1 NC_008260.1 identified by sequence similarity; predicted membrane protein; hypothetical protein 997038 4212809 ABO_0896 Alcanivorax borkumensis SK2 hypothetical protein YP_692616.1 995668 D 393595 CDS YP_692617.1 110833758 4212810 997147..997287 1 NC_008260.1 hypothetical protein 997287 4212810 ABO_0897 Alcanivorax borkumensis SK2 hypothetical protein YP_692617.1 997147 D 393595 CDS YP_692618.1 110833759 4212811 997217..1002799 1 NC_008260.1 (extracellular protein ) identified by sequencesimilarity; hypothetical protein 1002799 4212811 ABO_0898 Alcanivorax borkumensis SK2 hypothetical protein YP_692618.1 997217 D 393595 CDS YP_692619.1 110833760 4211784 1002977..1003324 1 NC_008260.1 conserved hypothetical protein identified by Glimmer2; Function unclear; hypothetical protein 1003324 yafM 4211784 yafM Alcanivorax borkumensis SK2 hypothetical protein YP_692619.1 1002977 D 393595 CDS YP_692620.1 110833761 4212812 1003490..1005775 1 NC_008260.1 (pbpC) (penicillin-binding protein 1C) identified by sequencesimilarity; InterPro: Penicillin binding protein transpeptidase domain; High confidence in function and specificity; penicillin-binding protein 1C 1005775 4212812 ABO_0900 Alcanivorax borkumensis SK2 penicillin-binding protein 1C YP_692620.1 1003490 D 393595 CDS YP_692621.1 110833762 4212813 1005917..1008136 1 NC_008260.1 identified by match to PFAM protein family HMMPF00384 InterPro: Prokaryotic molybdopterin oxidoreductases; High confidence in function and specificity; oxidoreductase 1008136 4212813 ABO_0901 Alcanivorax borkumensis SK2 oxidoreductase YP_692621.1 1005917 D 393595 CDS YP_692622.1 110833763 4212814 complement(1008201..1008719) 1 NC_008260.1 Function unclear; outer membrane lipoprotein Blc 1008719 4212814 ABO_0902 Alcanivorax borkumensis SK2 outer membrane lipoprotein Blc YP_692622.1 1008201 R 393595 CDS YP_692623.1 110833764 4212815 1008978..1009613 1 NC_008260.1 identified by sequence similarity; Family membership; hypothetical protein 1009613 4212815 ABO_0903 Alcanivorax borkumensis SK2 hypothetical protein YP_692623.1 1008978 D 393595 CDS YP_692624.1 110833765 4212816 1009958..1011487 1 NC_008260.1 identified by sequence similarity; hypothetical protein 1011487 4212816 ABO_0904 Alcanivorax borkumensis SK2 hypothetical protein YP_692624.1 1009958 D 393595 CDS YP_692625.1 110833766 4211968 1011508..1012638 1 NC_008260.1 (polysaccharide export protein ) identified by sequencesimilarity; InterPro: Polysaccharide export protein; Specificity unclear; outer membrane polysaccharide export protein 1012638 wza 4211968 wza Alcanivorax borkumensis SK2 outer membrane polysaccharide export protein YP_692625.1 1011508 D 393595 CDS YP_692626.1 110833767 4211969 1012773..1013069 1 NC_008260.1 wzb (protein-tyrosine-phosphatase) identified by match to PFAM protein family HMMPF01451; High confidence in function and specificity; low molecular weight protein-tyrosine-phosphatase 1013069 wzb 4211969 wzb Alcanivorax borkumensis SK2 low molecular weight protein-tyrosine-phosphatase YP_692626.1 1012773 D 393595 CDS YP_692627.1 110833768 4211970 1013133..1015343 1 NC_008260.1 tyrosine-protein kinase Wzc; Family membership; deleted EC_number 2.7.1.112; tyrosine-protein kinase 1015343 wzc 4211970 wzc Alcanivorax borkumensis SK2 tyrosine-protein kinase YP_692627.1 1013133 D 393595 CDS YP_692628.1 110833769 4211966 1015447..1016721 1 NC_008260.1 (capsular polysaccharide biosynthesis protein/UDP-glucose dehydrogenase) identified by match to PFAM protein family HMMPF00984 InterPro: UDP-glucose/GDP-mannose dehydrogenase family The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyze the NAD-dependent 2-fold oxidation of an alcholol to an acid without the release of an aldehyde intermediate; Family membership; capsular polysaccharide biosynthesis protein/UDP-glucose dehydrogenase/GDP mannose family protein, putati 1016721 wbpO 4211966 wbpO Alcanivorax borkumensis SK2 capsular polysaccharide biosynthesis protein/UDP-glucose dehydrogenase/GDP mannose family protein, putati YP_692628.1 1015447 D 393595 CDS YP_692629.1 110833770 4211569 1016975..1018015 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01746; InterPro: Nucleoside-diphosphate dependent epimerase/dehydratase family; Specificity unclear; 4-epimerase 1018015 galE 4211569 galE Alcanivorax borkumensis SK2 4-epimerase YP_692629.1 1016975 D 393595 CDS YP_692630.1 110833771 4212114 1018012..1019094 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01746 InterPro: NAD dependent epimerase/dehydratase family; High confidence in function and specificity; dTDP-glucose 4,6-dehydratase 1019094 rmlB 4212114 rmlB Alcanivorax borkumensis SK2 dTDP-glucose 4,6-dehydratase YP_692630.1 1018012 D 393595 CDS YP_692631.1 110833772 4212116 1019100..1020014 1 NC_008260.1 (rfbd) , (dTDP-4-keto-L-rhamnose reductase),(dTDP-6-deoxy-L-mannose dehydrogenase), (dTDP-L-rhamnose synthetase). identified by match to TIGR protein family HMMTIGR01746; High confidence in function and specificity; dTDP-4-dehydrorhamnose reductase 1020014 rmlD 4212116 rmlD Alcanivorax borkumensis SK2 dTDP-4-dehydrorhamnose reductase YP_692631.1 1019100 D 393595 CDS YP_692632.1 110833773 4212817 1020004..1021032 1 NC_008260.1 (acetyltransferase, ) identified by sequence similarity; Family membership; acetyltransferase 1021032 4212817 ABO_0912 Alcanivorax borkumensis SK2 acetyltransferase YP_692632.1 1020004 D 393595 CDS YP_692633.1 110833774 4212113 1021035..1021919 1 NC_008260.1 (rfba) , (dTDP-glucosesynthase), (dTDP-glucose pyrophosphorylase). identified by sequence similarity; InterPro: ADP-glucose pyrophosphorylase; High confidence in function and specificity; glucose-1-phosphate thymidylyltransferase 1021919 rmlA 4212113 rmlA Alcanivorax borkumensis SK2 glucose-1-phosphate thymidylyltransferase YP_692633.1 1021035 D 393595 CDS YP_692634.1 110833775 4212115 1021922..1022473 1 NC_008260.1 (dTDP-4-dehydrorhamnose 3,5-epimerase familyprotein),(dTDP-4-keto-6-deoxyglucose 3,5-epimerase) (dTDP-L-rhamnose synthetase). identified by sequencesimilarity; InterPro: dTDP-4-dehydrorhamnose 35-epimerase; High confidence in function and specificity; dTDP-4-dehydrorhamnose 3,5-epimerase 1022473 rmlC 4212115 rmlC Alcanivorax borkumensis SK2 dTDP-4-dehydrorhamnose 3,5-epimerase YP_692634.1 1021922 D 393595 CDS YP_692635.1 110833776 4211776 1022470..1023798 1 NC_008260.1 (imidazolonepropionase) identified by sequence similarity; InterPro: Polysaccharide biosynthesis protein; Specificity unclear; polysaccharide export protein, translocase 1023798 wzx 4211776 wzx Alcanivorax borkumensis SK2 polysaccharide export protein, translocase YP_692635.1 1022470 D 393595 CDS YP_692636.1 110833777 4212818 1023803..1024645 1 NC_008260.1 hypothetical protein 1024645 4212818 ABO_0916 Alcanivorax borkumensis SK2 hypothetical protein YP_692636.1 1023803 D 393595 CDS YP_692637.1 110833778 4212819 1024717..1026672 1 NC_008260.1 identified by sequencesimilarity; InterPro: Domain of unknown function DUF33; Family membership; acyltransferase 1026672 4212819 ABO_0917 Alcanivorax borkumensis SK2 acyltransferase YP_692637.1 1024717 D 393595 CDS YP_692638.1 110833779 4212820 1026760..1027725 1 NC_008260.1 (glycosyl transferase group 2 family protein) identified by match to TIGR protein family HMMTIGR01556 InterPro: Glycosyl transferase family 2; Family membership; glycosyl transferase group 2 family protein 1027725 4212820 ABO_0918 Alcanivorax borkumensis SK2 glycosyl transferase group 2 family protein YP_692638.1 1026760 D 393595 CDS YP_692639.1 110833780 4212821 1027727..1028830 1 NC_008260.1 identified by match to PFAM protein family HMMPF00534 InterPro: Glycosyl transferases group 1; High confidence in function and specificity; glycosyl transferase family protein 1028830 4212821 ABO_0919 Alcanivorax borkumensis SK2 glycosyl transferase family protein YP_692639.1 1027727 D 393595 CDS YP_692640.1 110833781 4212822 1028796..1029953 1 NC_008260.1 identified by match to PFAM protein family HMMPF00534 InterPro: Glycosyl transferases group 1; Family membership; group 1 glycosyl transferase family protein 1029953 4212822 ABO_0920 Alcanivorax borkumensis SK2 group 1 glycosyl transferase family protein YP_692640.1 1028796 D 393595 CDS YP_692641.1 110833782 4212823 1029950..1031164 1 NC_008260.1 hypothetical protein 1031164 4212823 ABO_0921 Alcanivorax borkumensis SK2 hypothetical protein YP_692641.1 1029950 D 393595 CDS YP_692642.1 110833783 4213668 1031161..1032240 1 NC_008260.1 hypothetical protein 1032240 4213668 ABO_0922 Alcanivorax borkumensis SK2 hypothetical protein YP_692642.1 1031161 D 393595 CDS YP_692643.1 110833784 4213669 1032237..1033418 1 NC_008260.1 hypothetical protein 1033418 4213669 ABO_0923 Alcanivorax borkumensis SK2 hypothetical protein YP_692643.1 1032237 D 393595 CDS YP_692644.1 110833785 4213670 1033415..1034542 1 NC_008260.1 (glycosyl transferase probable) group 1 family protein identified by sequence similarity; InterPro: Glycosyl transferases group 1; Family membership; glycosyl transferase family protein 1034542 4213670 ABO_0924 Alcanivorax borkumensis SK2 glycosyl transferase family protein YP_692644.1 1033415 D 393595 CDS YP_692645.1 110833786 4213671 1034539..1035135 1 NC_008260.1 identified by match to PFAM protein family HMMPF02397 This Pfam family represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways.; Family membership; sugar transferase 1035135 4213671 ABO_0925 Alcanivorax borkumensis SK2 sugar transferase YP_692645.1 1034539 D 393595 CDS YP_692646.1 110833787 4213672 1035132..1035758 1 NC_008260.1 (lpxA) (acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase) identified by match to PFAM protein family HMMPF00132 catalytic activity: (r)-3-hydroxytetradecanoyl-[acyl-carrier protein] + udp-n-acetylglucosamine = [acyl-carrier protein] + udp-3-o-(3-hydroxytetradecanoyl)-n-acetylglucosamine.; High confidence in function and specificity; acyl-ACP-UDP-N- acetylglucosamine O-acyltransferase 1035758 4213672 ABO_0926 Alcanivorax borkumensis SK2 acyl-ACP-UDP-N- acetylglucosamine O-acyltransferase YP_692646.1 1035132 D 393595 CDS YP_692647.1 110833788 4213673 1035767..1036948 1 NC_008260.1 (aminotransferase class I) identified by match to TIGR protein family HMMTIGR01265 InterPro: DegT/DnrJ/EryC1/StrS family The members of this family are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. This enzyme is probably involved in the (regulation) of the cell wall biogenesis; High confidence in function and specificity; DegT/DnrJ/EryC1/StrS aminotransferase 1036948 4213673 ABO_0927 Alcanivorax borkumensis SK2 DegT/DnrJ/EryC1/StrS aminotransferase YP_692647.1 1035767 D 393595 CDS YP_692648.1 110833789 4211965 1037654..1039543 1 NC_008260.1 identified by sequence similarity; InterPro: Polysaccharide biosynthesis protein CapD type; Family membership; polysaccharide biosynthesis protein 1039543 wbpM 4211965 wbpM Alcanivorax borkumensis SK2 polysaccharide biosynthesis protein YP_692648.1 1037654 D 393595 CDS YP_692649.1 110833790 4213674 1039796..1041568 1 NC_008260.1 transporter sodium/sulfate symporter family, identified by match to PFAM protein family HMMPF03600, TMHMM: reporting 12 transmembrane helices; Family membership; sodium/sulfate symporter 1041568 4213674 ABO_0929 Alcanivorax borkumensis SK2 sodium/sulfate symporter YP_692649.1 1039796 D 393595 CDS YP_692650.1 110833791 4213666 1041962..1042579 1 NC_008260.1 (adenylylphosphosulfate kinase) identified by sequencesimilarity; InterPro: Adenylylsulfate kinase; High confidence in function and specificity; adenylylsulfate kinase 1042579 apsK 4213666 apsK Alcanivorax borkumensis SK2 adenylylsulfate kinase YP_692650.1 1041962 D 393595 CDS YP_692651.1 110833792 4213675 1042693..1044129 1 NC_008260.1 hypothetical protein 1044129 4213675 ABO_0931 Alcanivorax borkumensis SK2 hypothetical protein YP_692651.1 1042693 D 393595 CDS YP_692652.1 110833793 4211725 1044440..1045606 1 NC_008260.1 (GDP-mannose 6-dehydrogenase) identified by sequence similarity; InterPro: UDP-glucose/GDP-mannose dehydrogenase family; High confidence in function and specificity; UDP-glucose 6-dehydrogenase 1045606 ugd1 4211725 ugd1 Alcanivorax borkumensis SK2 UDP-glucose 6-dehydrogenase YP_692652.1 1044440 D 393595 CDS YP_692653.1 110833794 4213676 1045619..1045987 1 NC_008260.1 hypothetical protein 1045987 4213676 ABO_0933 Alcanivorax borkumensis SK2 hypothetical protein YP_692653.1 1045619 D 393595 CDS YP_692654.1 110833795 4211680 1045980..1046861 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01099 InterPro: ADP-glucose pyrophosphorylase; High confidence in function and specificity; UTP-glucose-1-phosphate uridylyltransferase 1046861 galU 4211680 galU Alcanivorax borkumensis SK2 UTP-glucose-1-phosphate uridylyltransferase YP_692654.1 1045980 D 393595 CDS YP_692655.1 110833796 4211726 1046942..1048231 1 NC_008260.1 (UDP-glucose dehydrogenase ) identified by match to PFAM protein family HMMPF00984 InterPro: UDP-glucose/GDP-mannose dehydrogenase family; Specificity unclear; NDP-sugar dehydrogenase like UDP-glucose dehydrogenase 1048231 ugd2 4211726 ugd2 Alcanivorax borkumensis SK2 NDP-sugar dehydrogenase like UDP-glucose dehydrogenase YP_692655.1 1046942 D 393595 CDS YP_692656.1 110833797 4211325 1048234..1049880 1 NC_008260.1 identified by sequencesimilarity; InterPro: Phosphoglucose isomerase (PGI); High confidence in function and specificity; glucose-6-phosphate isomerase 1049880 pgi 4211325 pgi Alcanivorax borkumensis SK2 glucose-6-phosphate isomerase YP_692656.1 1048234 D 393595 CDS YP_692657.1 110833798 4213592 1049961..1051343 1 NC_008260.1 identified by sequence similarity; InterPro: Phosphoglucomutase and phosphomannomutase family; High confidence in function and specificity; phosphomannomutase 1051343 algC 4213592 algC Alcanivorax borkumensis SK2 phosphomannomutase YP_692657.1 1049961 D 393595 CDS YP_692658.1 110833799 4211679 1051509..1052441 1 NC_008260.1 (UDP-glucose-4-epimerase),(Galactowaldenase), . identified by match to TIGR protein family HMMTIGR01746 InterPro: NAD dependent epimerase/dehydratase family; High confidence in function and specificity; UDP-galactose 4-epimerase 1052441 galE 4211679 galE Alcanivorax borkumensis SK2 UDP-galactose 4-epimerase YP_692658.1 1051509 D 393595 CDS YP_692659.1 110833800 4213677 1052518..1053798 1 NC_008260.1 InterPro: Polysaccharide biosynthesis protein Members of this family are integral membrane proteins. Many members of the family are implicated in production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon; Family membership; cell surface polysaccharide transporter 1053798 4213677 ABO_0939 Alcanivorax borkumensis SK2 cell surface polysaccharide transporter YP_692659.1 1052518 D 393595 CDS YP_692660.1 110833801 4213678 1053836..1054681 1 NC_008260.1 InterPro: Sulfotransferase; hypothetical protein 1054681 4213678 ABO_0940 Alcanivorax borkumensis SK2 hypothetical protein YP_692660.1 1053836 D 393595 CDS YP_692661.1 110833802 4213679 complement(1054699..1055523) 1 NC_008260.1 (glycosyl transferase group 2 family protein) identified by match to PFAM protein family HMMPF00535 InterPro: Glycosyl transferase family 2 Diverse family, transferring sugar from UDP-glucose, UDP-N-acetyl-galactosamine, GDP-mannose or CDP-abequose, to a range of substrates including cellulose, dolichol phosphate and teichoic acids.; Family membership; glycosyl transferase group 2 family protein 1055523 4213679 ABO_0941 Alcanivorax borkumensis SK2 glycosyl transferase group 2 family protein YP_692661.1 1054699 R 393595 CDS YP_692662.1 110833803 4213680 complement(1055525..1056403) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Glycosyl transferase family 2; Hypothetical protein; glycosyl transferase family protein 1056403 4213680 ABO_0942 Alcanivorax borkumensis SK2 glycosyl transferase family protein YP_692662.1 1055525 R 393595 CDS YP_692663.1 110833804 4213681 complement(1056403..1057953) 1 NC_008260.1 hypothetical protein 1057953 4213681 ABO_0943 Alcanivorax borkumensis SK2 hypothetical protein YP_692663.1 1056403 R 393595 CDS YP_692664.1 110833805 4213838 complement(1058063..1059253) 1 NC_008260.1 (aspartate aminotransferase, transaminase A) identified by sequence similarity; identified by match to PFAM protein family HMMPF00155 InterPro: Aminotransferases class-I; High confidence in function and specificity; aspartate aminotransferase 1059253 aspC 4213838 aspC Alcanivorax borkumensis SK2 aspartate aminotransferase YP_692664.1 1058063 R 393595 CDS YP_692665.1 110833806 4211954 1059637..1061652 1 NC_008260.1 The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1061652 uvrB 4211954 uvrB Alcanivorax borkumensis SK2 excinuclease ABC subunit B YP_692665.1 1059637 D 393595 CDS YP_692666.1 110833807 4213682 complement(1061785..1062651) 1 NC_008260.1 identified by match to PFAM protein family HMMPF04401; Family membership; cysZ family protein 1062651 4213682 ABO_0946 Alcanivorax borkumensis SK2 cysZ family protein YP_692666.1 1061785 R 393595 CDS YP_692667.1 110833808 4213636 1063087..1066587 1 NC_008260.1 identified by match to PFAM protein family HMMPF02483 InterPro: SMC family C-terminal domain; High confidence in function and specificity; chromosome segregation protein SMC 1066587 smc 4213636 smc Alcanivorax borkumensis SK2 chromosome segregation protein SMC YP_692667.1 1063087 D 393595 CDS YP_692668.1 110833809 4211578 1066643..1067563 1 NC_008260.1 interacts directly with the cell division protein ftsZ; probable receptor for the septal ring structure, may anchor it to the inner-membrane; cell division protein ZipA 1067563 zipA 4211578 zipA Alcanivorax borkumensis SK2 cell division protein ZipA YP_692668.1 1066643 D 393595 CDS YP_692669.1 110833810 4211547 1067810..1070143 1 NC_008260.1 this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA 1070143 ligA 4211547 ligA Alcanivorax borkumensis SK2 NAD-dependent DNA ligase LigA YP_692669.1 1067810 D 393595 CDS YP_692670.1 110833811 4213683 1070140..1070721 1 NC_008260.1 Function unclear; hypothetical protein 1070721 4213683 ABO_0950 Alcanivorax borkumensis SK2 hypothetical protein YP_692670.1 1070140 D 393595 CDS YP_692671.1 110833812 4213684 1070853..1071281 1 NC_008260.1 (oxidoreductase FMN-binding) identified by match to PFAM protein family HMMPF00724; hypothetical protein 1071281 4213684 ABO_0951 Alcanivorax borkumensis SK2 hypothetical protein YP_692671.1 1070853 D 393595 CDS YP_692672.1 110833813 4213685 1071438..1072346 1 NC_008260.1 (phenazine biosynthesis protein PhzF family) identified by match to PFAM protein family HMMPF02567 InterPro: Phenazine biosynthesis PhzC/PhzF protein; hypothetical protein 1072346 4213685 ABO_0952 Alcanivorax borkumensis SK2 hypothetical protein YP_692672.1 1071438 D 393595 CDS YP_692673.1 110833814 4213489 complement(1072587..1073651) 1 NC_008260.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, tyrosine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1073651 aroF-2 4213489 aroF-2 Alcanivorax borkumensis SK2 phospho-2-dehydro-3-deoxyheptonate aldolase YP_692673.1 1072587 R 393595 CDS YP_692674.1 110833815 4213686 complement(1074235..1075155) 1 NC_008260.1 oxidoreductase (acting on the CH-OH group of donors with NAD+ or NADP+ as acceptor) family identified by sequence similarity; InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; oxidoreductase 1075155 4213686 ABO_0954 Alcanivorax borkumensis SK2 oxidoreductase YP_692674.1 1074235 R 393595 CDS YP_692675.1 110833816 4212706 complement(1075320..1075793) 1 NC_008260.1 oxidoreductase identified by match to PFAM protein family HMMPF01575 InterPro: MaoC-like dehydratase domain; Family membership; oxidoreductase 1075793 4212706 ABO_0955 Alcanivorax borkumensis SK2 oxidoreductase YP_692675.1 1075320 R 393595 CDS YP_692676.1 110833817 4212707 1076499..1077176 1 NC_008260.1 (phosphoglycerate mutase family protein) identified by match to TIGR protein family HMMTIGR00249; InterPro: Phosphoglycerate mutase family; Family membership; phosphoglycerate mutase 1077176 4212707 ABO_0956 Alcanivorax borkumensis SK2 phosphoglycerate mutase YP_692676.1 1076499 D 393595 CDS YP_692677.1 110833818 4212708 1077270..1078478 1 NC_008260.1 acyl-CoA dehydrogenase identified by match to PFAM protein family HMMPF00441 InterPro: Acyl-CoA dehydrogenase; Specificity unclear; acyl-CoA dehydrogenase 1078478 4212708 ABO_0957 Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_692677.1 1077270 D 393595 CDS YP_692678.1 110833819 4212709 1078563..1079600 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 1079600 4212709 ABO_0958 Alcanivorax borkumensis SK2 hypothetical protein YP_692678.1 1078563 D 393595 CDS YP_692679.1 110833820 4212710 1079717..1080481 1 NC_008260.1 oxidoreductase (short-chaindehydrogenase/reductase family) identified by match to PFAM protein family HMMPF00106 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; short chain dehydrogenase 1080481 4212710 ABO_0959 Alcanivorax borkumensis SK2 short chain dehydrogenase YP_692679.1 1079717 D 393595 CDS YP_692680.1 110833821 4212711 1080725..1081495 1 NC_008260.1 oxidoreductase (acting on the CH-OH group of donors with NAD+ or NADP+ as acceptor) identified by sequencesimilarity; InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; oxidoreductase 1081495 4212711 ABO_0960 Alcanivorax borkumensis SK2 oxidoreductase YP_692680.1 1080725 D 393595 CDS YP_692681.1 110833822 4212712 complement(1081728..1082669) 1 NC_008260.1 predicted metal-dependent hydrolase; hypothetical protein 1082669 4212712 ABO_0961 Alcanivorax borkumensis SK2 hypothetical protein YP_692681.1 1081728 R 393595 CDS YP_692682.1 110833823 4213588 complement(1082886..1084310) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01722 InterPro: Aldehyde dehydrogenase family; Specificity unclear; aldehyde dehydrogenase 1084310 aldh1 4213588 aldh1 Alcanivorax borkumensis SK2 aldehyde dehydrogenase YP_692682.1 1082886 R 393595 CDS YP_692683.1 110833824 4212713 complement(1084863..1086287) 1 NC_008260.1 InterPro: Outer membrane efflux protein probably a component that vonfers multidrug resistance. could also be implicated in the secretion of the siderophore, pyoverdine. probably involved in the efflux of the siderophore across the outer membrane; Hypothetical protein; hypothetical protein 1086287 4212713 ABO_0963 Alcanivorax borkumensis SK2 hypothetical protein YP_692683.1 1084863 R 393595 CDS YP_692684.1 110833825 4211278 complement(1086308..1089433) 1 NC_008260.1 identified by sequence similarity; InterPro: Hydrophobe/amphiphile efflux-1 HAE1; Family membership; AcrB/AcrD/AcrFa family protein 1089433 AcrB/AcrD/AcrFa 4211278 AcrB/AcrD/AcrFa Alcanivorax borkumensis SK2 AcrB/AcrD/AcrFa family protein YP_692684.1 1086308 R 393595 CDS YP_692685.1 110833826 4212714 complement(1089461..1090789) 1 NC_008260.1 (multidrug/solvent RND membrane fusion protein) identified by sequence similarity; InterPro: HlyD family secretion protein; High confidence in function and specificity; multidrug/solvent RND membrane fusion protein 1090789 4212714 ABO_0965 Alcanivorax borkumensis SK2 multidrug/solvent RND membrane fusion protein YP_692685.1 1089461 R 393595 CDS YP_692686.1 110833827 4211830 1090860..1091507 1 NC_008260.1 identifiedby sequence similarity; InterPro: Bacterial regulatory proteins TetR family; Specificity unclear; transcriptional regulator TtgR 1091507 ttgR 4211830 ttgR Alcanivorax borkumensis SK2 transcriptional regulator TtgR YP_692686.1 1090860 D 393595 CDS YP_692687.1 110833828 4212715 1091734..1092690 1 NC_008260.1 2-dehydropantoate 2-reductase identified by match to TIGR protein family HMMTIGR00745 InterPro: Ketopantoate reductase ApbA/PanE; Specificity unclear; 2-dehydropantoate 2-reductase 1092690 4212715 ABO_0967 Alcanivorax borkumensis SK2 2-dehydropantoate 2-reductase YP_692687.1 1091734 D 393595 CDS YP_692688.1 110833829 4212716 complement(1092716..1092955) 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 1092955 4212716 ABO_0968 Alcanivorax borkumensis SK2 hypothetical protein YP_692688.1 1092716 R 393595 CDS YP_692689.1 110833830 4212717 complement(1093028..1093435) 1 NC_008260.1 shows identity (ca. 40 ) to uncharacterized relative of glutathione S-transferase, MAPEG superfamily; hypothetical protein 1093435 4212717 ABO_0969 Alcanivorax borkumensis SK2 hypothetical protein YP_692689.1 1093028 R 393595 CDS YP_692690.1 110833831 4212718 complement(1093423..1094580) 1 NC_008260.1 D-amino acid oxidase family protein identified by match to TIGR protein family HMMTIGR00136 InterPro: NAD binding site; Family membership; D-amino acid oxidase family protein 1094580 4212718 ABO_0970 Alcanivorax borkumensis SK2 D-amino acid oxidase family protein YP_692690.1 1093423 R 393595 CDS YP_692691.1 110833832 4212719 complement(1094695..1095360) 1 NC_008260.1 hypothetical protein 1095360 4212719 ABO_0971 Alcanivorax borkumensis SK2 hypothetical protein YP_692691.1 1094695 R 393595 CDS YP_692692.1 110833833 4212720 1095621..1098224 1 NC_008260.1 phosphotransferases (with a nitrogenous group as acceptor) identified by match to PFAM protein family HMMPF04171 InterPro: Histidine kinase C-terminal; Family membership; phosphotransferase-histidine kinase family protein 1098224 4212720 ABO_0972 Alcanivorax borkumensis SK2 phosphotransferase-histidine kinase family protein YP_692692.1 1095621 D 393595 CDS YP_692693.1 110833834 4212721 1098965..1099714 1 NC_008260.1 methyltransferase identified by match to TIGR protein family HMMTIGR00740 InterPro: SAM (and some other nucleotide) binding motif; Conserved hypothetical protein; methyltransferase 1099714 4212721 ABO_0973 Alcanivorax borkumensis SK2 methyltransferase YP_692693.1 1098965 D 393595 CDS YP_692694.1 110833835 4212722 1099714..1100682 1 NC_008260.1 (methyltransferase ) identified by match to TIGR protein family HMMTIGR00452 InterPro: SAM (and some other nucleotide) binding motif; hypothetical protein 1100682 4212722 ABO_0974 Alcanivorax borkumensis SK2 hypothetical protein YP_692694.1 1099714 D 393595 CDS YP_692695.1 110833836 4212723 1101239..1101559 1 NC_008260.1 hypothetical protein 1101559 4212723 ABO_0975 Alcanivorax borkumensis SK2 hypothetical protein YP_692695.1 1101239 D 393595 CDS YP_692696.1 110833837 4212724 complement(1101604..1102356) 1 NC_008260.1 hypothetical protein 1102356 4212724 ABO_0976 Alcanivorax borkumensis SK2 hypothetical protein YP_692696.1 1101604 R 393595 CDS YP_692697.1 110833838 4212725 1102589..1103809 1 NC_008260.1 hypothetical protein 1103809 4212725 ABO_0977 Alcanivorax borkumensis SK2 hypothetical protein YP_692697.1 1102589 D 393595 CDS YP_692698.1 110833839 4212843 1103810..1104130 1 NC_008260.1 hypothetical protein 1104130 4212843 ABO_0978 Alcanivorax borkumensis SK2 hypothetical protein YP_692698.1 1103810 D 393595 CDS YP_692699.1 110833840 4212844 1104320..1104796 1 NC_008260.1 hypothetical protein 1104796 4212844 ABO_0979 Alcanivorax borkumensis SK2 hypothetical protein YP_692699.1 1104320 D 393595 CDS YP_692700.1 110833841 4211645 complement(1105023..1105988) 1 NC_008260.1 Family membership; quinone oxidureductase 1105988 qor 4211645 qor Alcanivorax borkumensis SK2 quinone oxidureductase YP_692700.1 1105023 R 393595 CDS YP_692701.1 110833842 4212845 1106161..1107180 1 NC_008260.1 (hydrolase ) identified by match to PFAM protein family HMMPF00753 InterPro: Metallo-beta-lactamase superfamily shows some identity to Zn-dependet hydrolases; hypothetical protein 1107180 4212845 ABO_0981 Alcanivorax borkumensis SK2 hypothetical protein YP_692701.1 1106161 D 393595 CDS YP_692702.1 110833843 4212846 1107473..1107685 1 NC_008260.1 hypothetical protein 1107685 4212846 ABO_0982 Alcanivorax borkumensis SK2 hypothetical protein YP_692702.1 1107473 D 393595 CDS YP_692703.1 110833844 4212442 1107771..1108979 1 NC_008260.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1108979 pcaF 4212442 pcaF Alcanivorax borkumensis SK2 acetyl-CoA acetyltransferase YP_692703.1 1107771 D 393595 CDS YP_692704.1 110833845 4211687 1108976..1110142 1 NC_008260.1 identified by match to PFAM protein family HMMPF00441; High confidence in function and specificity; glutaryl-CoA dehydrogenase 1110142 gcdH 4211687 gcdH Alcanivorax borkumensis SK2 glutaryl-CoA dehydrogenase YP_692704.1 1108976 D 393595 CDS YP_692705.1 110833846 4212847 complement(1111269..1113098) 1 NC_008260.1 activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization; long-chain-acyl-CoA synthetase 1113098 4212847 ABO_0985 Alcanivorax borkumensis SK2 long-chain-acyl-CoA synthetase YP_692705.1 1111269 R 393595 CDS YP_692706.1 110833847 4211796 complement(1113315..1115270) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00514 InterPro: Carbamoyl-phosphate synthase; High confidence in function and specificity; acetyl-CoA carboxylase 1115270 accA 4211796 accA Alcanivorax borkumensis SK2 acetyl-CoA carboxylase YP_692706.1 1113315 R 393595 CDS YP_692707.1 110833848 4213340 complement(1115451..1116290) 1 NC_008260.1 (enoyl-CoA hydratase/isomerase FadB1x) identified by sequence similarity; InterPro: Enoyl-CoA hydratase/isomerase; High confidence in function and specificity; enoyl-CoA hydratase 1116290 ech2 4213340 ech2 Alcanivorax borkumensis SK2 enoyl-CoA hydratase YP_692707.1 1115451 R 393595 CDS YP_692708.1 110833849 4212848 complement(1116368..1117525) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Acyl-CoA dehydrogenase; Family membership; acyl-CoA dehydrogenase 1117525 4212848 ABO_0988 Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_692708.1 1116368 R 393595 CDS YP_692709.1 110833850 4211801 complement(1117708..1119318) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Carboxyl transferase family; High confidence in function and specificity; acetyl-CoA carboxylase 1119318 accD 4211801 accD Alcanivorax borkumensis SK2 acetyl-CoA carboxylase YP_692709.1 1117708 R 393595 CDS YP_692710.1 110833851 4212849 complement(1119318..1120187) 1 NC_008260.1 oxidoreductase identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; oxidoreductase 1120187 4212849 ABO_0990 Alcanivorax borkumensis SK2 oxidoreductase YP_692710.1 1119318 R 393595 CDS YP_692711.1 110833852 4212850 complement(1120255..1122039) 1 NC_008260.1 hypothetical protein 1122039 4212850 ABO_0991 Alcanivorax borkumensis SK2 hypothetical protein YP_692711.1 1120255 R 393595 CDS YP_692712.1 110833853 4212851 1122320..1122916 1 NC_008260.1 transcriptional regulator TetR family identified by match to PFAM protein family HMMPF00440 InterPro: Bacterial regulatory proteins TetR family; Family membership; TetR family transcriptional regulator 1122916 4212851 ABO_0992 Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_692712.1 1122320 D 393595 CDS YP_692713.1 110833854 4212852 1124245..1125603 1 NC_008260.1 hypothetical protein 1125603 4212852 ABO_0993 Alcanivorax borkumensis SK2 hypothetical protein YP_692713.1 1124245 D 393595 CDS YP_692714.1 110833855 4212853 1125739..1126812 1 NC_008260.1 InterPro: Cyclic nucleotide-binding domain; Family membership; cyclic nucleotide-binding protein 1126812 4212853 ABO_0994 Alcanivorax borkumensis SK2 cyclic nucleotide-binding protein YP_692714.1 1125739 D 393595 CDS YP_692715.1 110833856 4211794 1126876..1127778 1 NC_008260.1 (nicotinamide adenine dinucleotide kinase ) identified by match to PFAM protein family HMMPF01513; High confidence in function and specificity; nicotinamide adenine dinucleotide kinase 1127778 yfjB 4211794 yfjB Alcanivorax borkumensis SK2 nicotinamide adenine dinucleotide kinase YP_692715.1 1126876 D 393595 CDS YP_692716.1 110833857 4212854 1127860..1128132 1 NC_008260.1 hypothetical protein 1128132 4212854 ABO_0996 Alcanivorax borkumensis SK2 hypothetical protein YP_692716.1 1127860 D 393595 CDS YP_692717.1 110833858 4212855 1128412..1130901 1 NC_008260.1 hypothetical protein 1130901 4212855 ABO_0997 Alcanivorax borkumensis SK2 hypothetical protein YP_692717.1 1128412 D 393595 CDS YP_692718.1 110833859 4212453 1131045..1133681 1 NC_008260.1 (aminopeptidase N, alpha-aminoacylpeptide hydrolase) identified by sequence similarity; InterPro: Aminopeptidase N APN (CD13); High confidence in function and specificity; aminopeptidase 1133681 pepN 4212453 pepN Alcanivorax borkumensis SK2 aminopeptidase YP_692718.1 1131045 D 393595 CDS YP_692719.1 110833860 4212856 1133895..1135913 1 NC_008260.1 hypothetical protein 1135913 4212856 ABO_0999 Alcanivorax borkumensis SK2 hypothetical protein YP_692719.1 1133895 D 393595 CDS YP_692720.1 110833861 4212857 1135960..1137366 1 NC_008260.1 hypothetical protein 1137366 4212857 ABO_1000 Alcanivorax borkumensis SK2 hypothetical protein YP_692720.1 1135960 D 393595 CDS YP_692721.1 110833862 4212858 1137422..1138573 1 NC_008260.1 identified by match to PFAM protein family HMMPF02012 InterPro: BNR repeat Uncharacterized protein related to plant photosystem II stability; Family membership; BNR repeat-containing protein 1138573 4212858 ABO_1001 Alcanivorax borkumensis SK2 BNR repeat-containing protein YP_692721.1 1137422 D 393595 CDS YP_692722.1 110833863 4212859 1138584..1140965 1 NC_008260.1 identified by sequence similarity; InterPro: HMGCR/Patched 5TM box; Conserved hypothetical protein; hypothetical protein 1140965 4212859 ABO_1002 Alcanivorax borkumensis SK2 hypothetical protein YP_692722.1 1138584 D 393595 CDS YP_692723.1 110833864 4211158 1141100..1142206 1 NC_008260.1 (dihydroorotate dehydrogenase) identified by match to PFAM protein family HMMPF01180 InterPro: Dihydroorotate dehydrogenase; High confidence in function and specificity; dihydroorotate dehydrogenase 1142206 pyrD 4211158 pyrD Alcanivorax borkumensis SK2 dihydroorotate dehydrogenase YP_692723.1 1141100 D 393595 CDS YP_692724.1 110833865 4212112 complement(1142289..1142720) 1 NC_008260.1 identify by similarity to PFAM protein family PF04957; High confidence in function and specificity; ribosome modulation factor 1142720 rmf 4212112 rmf Alcanivorax borkumensis SK2 ribosome modulation factor YP_692724.1 1142289 R 393595 CDS YP_692725.1 110833866 4212860 1142748..1144862 1 NC_008260.1 catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 1144862 rlmL 4212860 rlmL Alcanivorax borkumensis SK2 23S rRNA m(2)G2445 methyltransferase YP_692725.1 1142748 D 393595 CDS YP_692726.1 110833867 4212861 1144859..1145080 1 NC_008260.1 hypothetical protein 1145080 4212861 ABO_1006 Alcanivorax borkumensis SK2 hypothetical protein YP_692726.1 1144859 D 393595 CDS YP_692727.1 110833868 4212882 complement(1145157..1145876) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Uncharacterized protein family UPF0006; Family membership; TatD family hydrolase 1145876 4212882 ABO_1007 Alcanivorax borkumensis SK2 TatD family hydrolase YP_692727.1 1145157 R 393595 CDS YP_692728.1 110833869 4212883 complement(1145938..1146429) 1 NC_008260.1 hypothetical protein 1146429 4212883 ABO_1008 Alcanivorax borkumensis SK2 hypothetical protein YP_692728.1 1145938 R 393595 CDS YP_692729.1 110833870 4211543 complement(1146410..1147024) 1 NC_008260.1 (lexA-1) identified by sequence similarity; InterPro: LexA DNA binding domain; High confidence in function and specificity; LexA repressor 1147024 lexA 4211543 lexA Alcanivorax borkumensis SK2 LexA repressor YP_692729.1 1146410 R 393595 CDS YP_692730.1 110833871 4212884 1147330..1147980 1 NC_008260.1 InterPro: Cyclic nucleotide-binding domain; hypothetical protein 1147980 4212884 ABO_1010 Alcanivorax borkumensis SK2 hypothetical protein YP_692730.1 1147330 D 393595 CDS YP_692731.1 110833872 4211952 complement(1148025..1148465) 1 NC_008260.1 uspA identified by match to PFAM protein family HMMPF00582 InterPro: Universal stress protein (Usp); Family membership; universal stress protein 1148465 uspA 4211952 uspA Alcanivorax borkumensis SK2 universal stress protein YP_692731.1 1148025 R 393595 CDS YP_692732.1 110833873 4211920 1148680..1151409 1 NC_008260.1 catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I 1151409 topA 4211920 topA Alcanivorax borkumensis SK2 DNA topoisomerase I YP_692732.1 1148680 D 393595 CDS YP_692733.1 110833874 4212885 1151566..1152105 1 NC_008260.1 hypothetical protein 1152105 4212885 ABO_1013 Alcanivorax borkumensis SK2 hypothetical protein YP_692733.1 1151566 D 393595 CDS YP_692734.1 110833875 4212886 1152370..1153161 1 NC_008260.1 hypothetical protein 1153161 4212886 ABO_1014 Alcanivorax borkumensis SK2 hypothetical protein YP_692734.1 1152370 D 393595 CDS YP_692735.1 110833876 4212887 1153179..1154462 1 NC_008260.1 hypothetical protein 1154462 4212887 ABO_1015 Alcanivorax borkumensis SK2 hypothetical protein YP_692735.1 1153179 D 393595 CDS YP_692736.1 110833877 4212888 1154618..1155283 1 NC_008260.1 transcriptional regulator TetR family identified by match to PFAM protein family HMMPF00440 InterPro: Bacterial regulatory proteins TetR family; Specificity unclear; TetR family transcriptional regulator 1155283 4212888 ABO_1016 Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_692736.1 1154618 D 393595 CDS YP_692737.1 110833878 4213353 1155483..1155851 1 NC_008260.1 hypothetical protein 1155851 erfK 4213353 erfK Alcanivorax borkumensis SK2 hypothetical protein YP_692737.1 1155483 D 393595 CDS YP_692738.1 110833879 4211415 1155851..1156888 1 NC_008260.1 (N-acetyl-beta-hexosaminidase) identified by sequence similarity; InterPro: Glycoside hydrolase family; High confidence in function and specificity; Beta-hexosaminidase 1156888 nagZ 4211415 nagZ Alcanivorax borkumensis SK2 Beta-hexosaminidase YP_692738.1 1155851 D 393595 CDS YP_692739.1 110833880 4212889 1156919..1158076 1 NC_008260.1 identified by sequencesimilarity; InterPro: Uncharacterized protein family UPF0003; hypothetical protein 1158076 4212889 ABO_1019 Alcanivorax borkumensis SK2 hypothetical protein YP_692739.1 1156919 D 393595 CDS YP_692740.1 110833881 4211483 1158063..1158635 1 NC_008260.1 identified by sequence similarity; InterPro: Phosphoribosyl transferase; High confidence in function and specificity; hypoxanthine phosphoribosyltransferase 1158635 hpt 4211483 hpt Alcanivorax borkumensis SK2 hypoxanthine phosphoribosyltransferase YP_692740.1 1158063 D 393595 CDS YP_692741.1 110833882 4212213 1158635..1159375 1 NC_008260.1 (heat shock protein ) identified by sequence similarity; InterPro: Purine and other phosphorylases family 2; High confidence in function and specificity; nucleoside phosphorylase 1159375 deoD 4212213 deoD Alcanivorax borkumensis SK2 nucleoside phosphorylase YP_692741.1 1158635 D 393595 CDS YP_692742.1 110833883 4212890 1159433..1160458 1 NC_008260.1 (metal ion transporter ) identified by match to PFAM protein family HMMPF03471 InterPro: Domain of unknown function DUF21; Family membership; hemolysin 1160458 4212890 ABO_1022 Alcanivorax borkumensis SK2 hemolysin YP_692742.1 1159433 D 393595 CDS YP_692743.1 110833884 4212579 1160497..1161465 1 NC_008260.1 (cysteine synthase A, O-acetylserine sulfhydrylase A, O- acetylserine (thiol)-lyase A, sulfate starvation-induced protein 5) identified by sequencesimilarity; InterPro: Pyridoxal-5-phosphate-dependent enzymes beta family; High confidence in function and specificity; cysteine synthase A 1161465 cysK 4212579 cysK Alcanivorax borkumensis SK2 cysteine synthase A YP_692743.1 1160497 D 393595 CDS YP_692744.1 110833885 4212891 1161835..1162998 1 NC_008260.1 (conserved hypothetical protein TIGR00275) identified by match to TIGR protein family HMMTIGR00275 InterPro: HI0933-like protein This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases; hypothetical protein 1162998 4212891 ABO_1024 Alcanivorax borkumensis SK2 hypothetical protein YP_692744.1 1161835 D 393595 CDS YP_692745.1 110833886 4212892 complement(1163046..1163462) 1 NC_008260.1 hypothetical protein 1163462 4212892 ABO_1025 Alcanivorax borkumensis SK2 hypothetical protein YP_692745.1 1163046 R 393595 CDS YP_692746.1 110833887 4212893 1163625..1164533 1 NC_008260.1 oxidoreductase (short-chaindehydrogenase/reductase family) identified by match to PFAM protein family HMMPF00106; Family membership; oxidoreductase 1164533 4212893 ABO_1026 Alcanivorax borkumensis SK2 oxidoreductase YP_692746.1 1163625 D 393595 CDS YP_692747.1 110833888 4212894 complement(1164587..1165183) 1 NC_008260.1 hypothetical protein 1165183 4212894 ABO_1027 Alcanivorax borkumensis SK2 hypothetical protein YP_692747.1 1164587 R 393595 CDS YP_692748.1 110833889 4211510 complement(1165397..1168876) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00643 InterPro: Transcription-repair coupling factor; High confidence in function and specificity; transcription-repair coupling factor 1168876 mfd 4211510 mfd Alcanivorax borkumensis SK2 transcription-repair coupling factor YP_692748.1 1165397 R 393595 CDS YP_692749.1 110833890 4211933 1169510..1170388 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00189 InterPro: Acyl-CoA thioesterase; High confidence in function and specificity; acyl-CoA thioesterase 1170388 tesB 4211933 tesB Alcanivorax borkumensis SK2 acyl-CoA thioesterase YP_692749.1 1169510 D 393595 CDS YP_692750.1 110833891 4212895 1170385..1170981 1 NC_008260.1 (argD) (acetylornithine aminotransferase) identified by sequence similarity; hypothetical protein 1170981 4212895 ABO_1030 Alcanivorax borkumensis SK2 hypothetical protein YP_692750.1 1170385 D 393595 CDS YP_692751.1 110833892 4211683 1171183..1172622 1 NC_008260.1 catalyzes the formation of 3-phospho-D-glyceroyl phosphate from D-glyceraldehyde 3-phosphate; involved in growth under gluconeogenic conditions and in glycolytic activity at high ATP concentrations in Corynebacterium; NAD and NADP dependent; glyceraldehyde-3-phosphate dehydrogenase 1172622 gapA 4211683 gapA Alcanivorax borkumensis SK2 glyceraldehyde-3-phosphate dehydrogenase YP_692751.1 1171183 D 393595 CDS YP_692752.1 110833893 4211663 1172889..1174235 1 NC_008260.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 1174235 nqrA 4211663 nqrA Alcanivorax borkumensis SK2 Na(+)-translocating NADH-quinone reductase subunit A YP_692752.1 1172889 D 393595 CDS YP_692753.1 110833894 4211664 1174238..1175497 1 NC_008260.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 1175497 nqrB 4211664 nqrB Alcanivorax borkumensis SK2 Na(+)-translocating NADH-quinone reductase subunit B YP_692753.1 1174238 D 393595 CDS YP_692754.1 110833895 4211665 1175497..1176318 1 NC_008260.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit C 1176318 nqrC 4211665 nqrC Alcanivorax borkumensis SK2 Na(+)-translocating NADH-quinone reductase subunit C YP_692754.1 1175497 D 393595 CDS YP_692755.1 110833896 4211666 1176318..1176983 1 NC_008260.1 Part of the NQR complex which catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit D 1176983 nqrD 4211666 nqrD Alcanivorax borkumensis SK2 Na(+)-translocating NADH-quinone reductase subunit D YP_692755.1 1176318 D 393595 CDS YP_692756.1 110833897 4211667 1176996..1177616 1 NC_008260.1 Part of the NQR complex which consists of NqrA, NqrB, NqrC, NqrD, NqrE and NqrF; NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na(+) ions from the cytoplasm to the periplasm; NqrE is probably involved in the second step, the conversion of ubisemiquinone to ubiquinol.; Na(+)-translocating NADH-quinone reductase subunit E 1177616 nqrE 4211667 nqrE Alcanivorax borkumensis SK2 Na(+)-translocating NADH-quinone reductase subunit E YP_692756.1 1176996 D 393595 CDS YP_692757.1 110833898 4211668 1177632..1178861 1 NC_008260.1 uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 1178861 nqrF 4211668 nqrF Alcanivorax borkumensis SK2 Na(+)-translocating NADH-quinone reductase subunit F YP_692757.1 1177632 D 393595 CDS YP_692758.1 110833899 4213474 1179049..1180062 1 NC_008260.1 thiamine biosynthesis lipoprotein identified by sequencesimilarity; InterPro: ApbE family; Family membership; thiamine biosynthesis lipoprotein 1180062 apbE 4213474 apbE Alcanivorax borkumensis SK2 thiamine biosynthesis lipoprotein YP_692758.1 1179049 D 393595 CDS YP_692759.1 110833900 4212896 1180064..1180300 1 NC_008260.1 Protein of family with unknown function (DUF539); hypothetical protein 1180300 4212896 ABO_1039 Alcanivorax borkumensis SK2 hypothetical protein YP_692759.1 1180064 D 393595 CDS YP_692760.1 110833902 4212897 complement(1180404..1181681) 1 NC_008260.1 (acetyltransferase GNAT family, ) identified by match to TIGR protein family HMMTIGR01575 InterPro: GCN5-related N-acetyltransferase; Family membership; acetyltransferase 1181681 4212897 ABO_1040 Alcanivorax borkumensis SK2 acetyltransferase YP_692760.1 1180404 R 393595 CDS YP_692761.1 110833901 4212898 1181674..1182843 1 NC_008260.1 identified by sequence similarity; hypothetical protein 1182843 4212898 ABO_1041 Alcanivorax borkumensis SK2 hypothetical protein YP_692761.1 1181674 D 393595 CDS YP_692762.1 110833903 4212899 complement(1182807..1183658) 1 NC_008260.1 identified by match to PFAM protein family HMMPF03009 InterPro: Glycerophosphoryl diester phosphodiesterase; Conserved hypothetical protein; glycerophosphoryl diester phosphodiesterase 1183658 4212899 ABO_1042 Alcanivorax borkumensis SK2 glycerophosphoryl diester phosphodiesterase YP_692762.1 1182807 R 393595 CDS YP_692763.1 110833904 4212900 1183731..1184885 1 NC_008260.1 hypothetical protein 1184885 4212900 ABO_1043 Alcanivorax borkumensis SK2 hypothetical protein YP_692763.1 1183731 D 393595 CDS YP_692764.1 110833905 4212901 1185072..1186250 1 NC_008260.1 shows homology to glycosyl transferase group 1 family protein; hypothetical protein 1186250 4212901 ABO_1044 Alcanivorax borkumensis SK2 hypothetical protein YP_692764.1 1185072 D 393595 CDS YP_692765.1 110833906 4212824 1186315..1186980 1 NC_008260.1 identified by sequence similarity; hypothetical protein 1186980 4212824 ABO_1045 Alcanivorax borkumensis SK2 hypothetical protein YP_692765.1 1186315 D 393595 CDS YP_692766.1 110833907 4212825 complement(1187042..1187935) 1 NC_008260.1 identified by sequence similarity; InterPro: Carbon-nitrogen hydrolase This family contains nitrilases that break carbon-nitrogen bonds and appear to be involved in the reduction of organic nitrogen compounds and ammonia production; Family membership; carbon-nitrogen hydrolase family protein 1187935 4212825 ABO_1046 Alcanivorax borkumensis SK2 carbon-nitrogen hydrolase family protein YP_692766.1 1187042 R 393595 CDS YP_692767.1 110833908 4212826 complement(1187968..1188981) 1 NC_008260.1 identified by match to PFAM protein family HMMPF04371; Family membership; peptidyl-arginine deiminase family protein 1188981 4212826 ABO_1047 Alcanivorax borkumensis SK2 peptidyl-arginine deiminase family protein YP_692767.1 1187968 R 393595 CDS YP_692768.1 110833909 4212827 complement(1189023..1189811) 1 NC_008260.1 hypothetical protein 1189811 4212827 ABO_1048 Alcanivorax borkumensis SK2 hypothetical protein YP_692768.1 1189023 R 393595 CDS YP_692769.1 110833910 4212828 1189971..1191215 1 NC_008260.1 lipoprotein releasing system permease protein) identified by sequence similarity; transport lipids targeted to the outer membrane across the inner membrane.; Conserved hypothetical protein; LolC/E family lipoprotein releasing system, transmembrane protein 1191215 4212828 ABO_1049 Alcanivorax borkumensis SK2 LolC/E family lipoprotein releasing system, transmembrane protein YP_692769.1 1189971 D 393595 CDS YP_692770.1 110833911 4211457 1191172..1191894 1 NC_008260.1 (ATP-binding cassette (ABC) transporters, permease protein, ) identified by match to TIGR protein family HMMTIGR00968; Family membership; lipoprotein releasing system ATP-binding protein lolD 1191894 lolD 4211457 lolD Alcanivorax borkumensis SK2 lipoprotein releasing system ATP-binding protein lolD YP_692770.1 1191172 D 393595 CDS YP_692771.1 110833912 4212829 complement(1191877..1192467) 1 NC_008260.1 hypothetical protein 1192467 4212829 ABO_1051 Alcanivorax borkumensis SK2 hypothetical protein YP_692771.1 1191877 R 393595 CDS YP_692772.1 110833913 4211654 1192781..1195009 1 NC_008260.1 (DNA internalization-related competence protein ComEC/Rec2) identified by match to PFAM protein family HMMPF03772 InterPro: DNA internalization-related competence protein ComEC/Rec2 Possibly exported; Family membership; DNA internalization-like protein 1195009 rec2 4211654 rec2 Alcanivorax borkumensis SK2 DNA internalization-like protein YP_692772.1 1192781 D 393595 CDS YP_692773.1 110833914 4213025 1195040..1195669 1 NC_008260.1 MotA/TolQ/ExbB proton channel family protein identified by match to PFAM protein family HMMPF01618; High confidence in function and specificity; MotA/TolQ/ExbB proton channel family protein 1195669 exbB1 4213025 exbB1 Alcanivorax borkumensis SK2 MotA/TolQ/ExbB proton channel family protein YP_692773.1 1195040 D 393595 CDS YP_692774.1 110833915 4213027 1195666..1196091 1 NC_008260.1 InterPro: Biopolymer transport protein ExbD/TolR; Specificity unclear; biopolymer transport protein ExbD 1196091 exbD1 4213027 exbD1 Alcanivorax borkumensis SK2 biopolymer transport protein ExbD YP_692774.1 1195666 D 393595 CDS YP_692775.1 110833916 4211371 1196088..1197836 1 NC_008260.1 (ATP-binding cassette (ABC) transporters, permease protein, ) identified by sequence similarity; InterPro: ABC transporter transmembrane region; High confidence in function and specificity; LPS ABC transporter permease 1197836 msbA 4211371 msbA Alcanivorax borkumensis SK2 LPS ABC transporter permease YP_692775.1 1196088 D 393595 CDS YP_692776.1 110833917 4211464 1197846..1198829 1 NC_008260.1 tetraacyldisaccharide 4'-kinase (EC 2.7.1.130) (lipid a 4'-kinase).; High confidence in function and specificity; tetraacyldisaccharide 4`-kinase 1198829 lpxK 4211464 lpxK Alcanivorax borkumensis SK2 tetraacyldisaccharide 4`-kinase YP_692776.1 1197846 D 393595 CDS YP_692777.1 110833918 4211215 1198991..1199746 1 NC_008260.1 (3-deoxy-D-manno-octulosonatecytidylyltransferase) 3-deoxy-manno-octulosonate cytidylyltransferase (EC 2.7.7.38) (cmp-kdo synthetase) (cmp-2-keto-3-deoxyoctulosonic acid synthetase) (cks).; High confidence in function and specificity; 3-deoxy-D-manno-octulosonate cytidylyltransferase 1199746 kdsB 4211215 kdsB Alcanivorax borkumensis SK2 3-deoxy-D-manno-octulosonate cytidylyltransferase YP_692777.1 1198991 D 393595 CDS YP_692778.1 110833919 4211232 1199746..1200219 1 NC_008260.1 pt identified by match to PFAM protein family HMMPF01451 InterPro: Low molecular weight phosphotyrosine protein phosphatase; High confidence in function and specificity; protein tyrosine phosphatase 1200219 pt 4211232 pt Alcanivorax borkumensis SK2 protein tyrosine phosphatase YP_692778.1 1199746 D 393595 CDS YP_692779.1 110833920 4211240 1200216..1201259 1 NC_008260.1 (udp-n- acetylmuramate dehydrogenase); identify by similarity to PFAM protein family PF01565 and PF02873; High confidence in function and specificity; UDP-N-acetylenolpyruvoylglucosamine reductase 1201259 murB 4211240 murB Alcanivorax borkumensis SK2 UDP-N-acetylenolpyruvoylglucosamine reductase YP_692779.1 1200216 D 393595 CDS YP_692780.1 110833921 4212120 complement(1201361..1204585) 1 NC_008260.1 phosphoric diester hydrolase (ribonuclease E) identified by sequencesimilarity; InterPro: Ribonuclease E and G; Specificity unclear; phosphoric diester hydrolase 1204585 rne 4212120 rne Alcanivorax borkumensis SK2 phosphoric diester hydrolase YP_692780.1 1201361 R 393595 CDS YP_692781.1 110833922 4212110 1205208..1206161 1 NC_008260.1 (Pseudouridylate synthase)(Uracil hydrolyase).; High confidence in function and specificity; ribosomal large subunit pseudouridine synthase C 1206161 rluC 4212110 rluC Alcanivorax borkumensis SK2 ribosomal large subunit pseudouridine synthase C YP_692781.1 1205208 D 393595 CDS YP_692782.1 110833923 4212830 1206158..1206847 1 NC_008260.1 (hydrolase haloacid dehalogenase-like family) identified by sequencesimilarity; InterPro: Haloacid dehalogenase/epoxide hydrolase family; Family membership; HAD superfamily hydrolase 1206847 4212830 ABO_1062 Alcanivorax borkumensis SK2 HAD superfamily hydrolase YP_692782.1 1206158 D 393595 CDS YP_692783.1 110833924 4212831 1206844..1207824 1 NC_008260.1 peptidase S49 family identified by match to PFAM protein family HMMPF01343 InterPro: Signal peptide peptidase SppA 36K type; Function unclear; peptidase 1207824 4212831 ABO_1063 Alcanivorax borkumensis SK2 peptidase YP_692783.1 1206844 D 393595 CDS YP_692784.1 110833925 4211496 complement(1207916..1208509) 1 NC_008260.1 identified by match to PFAM protein family HMMPF02545 InterPro: Maf-like protein; High confidence in function and specificity; maf protein 1208509 maf-2 4211496 maf-2 Alcanivorax borkumensis SK2 maf protein YP_692784.1 1207916 R 393595 CDS YP_692785.1 110833926 4212832 1208646..1209161 1 NC_008260.1 identified by sequence similarity; InterPro: DUF177; hypothetical protein 1209161 4212832 ABO_1065 Alcanivorax borkumensis SK2 hypothetical protein YP_692785.1 1208646 D 393595 CDS YP_692786.1 110833927 4212300 1209195..1209383 1 NC_008260.1 identified by sequencesimilarity; High confidence in function and specificity; 50S ribosomal protein L32 1209383 rpmF 4212300 rpmF Alcanivorax borkumensis SK2 50S ribosomal protein L32 YP_692786.1 1209195 D 393595 CDS YP_692787.1 110833928 4212262 1209568..1210617 1 NC_008260.1 identified by sequencesimilarity; InterPro: Fatty acid synthesis plsX protein; Family membership; fatty acid/phospholipid synthesis protein PlsX 1210617 plsX 4212262 plsX Alcanivorax borkumensis SK2 fatty acid/phospholipid synthesis protein PlsX YP_692787.1 1209568 D 393595 CDS YP_692788.1 110833929 4213034 1210736..1211665 1 NC_008260.1 identified by sequencesimilarity; InterPro: Acyl transferase domain; High confidence in function and specificity; malonyl CoA-ACP transacylase 1211665 fabD 4213034 fabD Alcanivorax borkumensis SK2 malonyl CoA-ACP transacylase YP_692788.1 1210736 D 393595 CDS YP_692789.1 110833930 4213036 1211668..1212399 1 NC_008260.1 identified by sequence similarity; InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity; 3-oxoacyl-ACP reductase 1212399 fabG 4213036 fabG Alcanivorax borkumensis SK2 3-oxoacyl-ACP reductase YP_692789.1 1211668 D 393595 CDS YP_692790.1 110833931 4211276 1212586..1212819 1 NC_008260.1 identified by match to PFAM protein family HMMPF00550 InterPro: Phosphopantetheine attachment site; Family membership; acyl carrier protein 1212819 acpP 4211276 acpP Alcanivorax borkumensis SK2 acyl carrier protein YP_692790.1 1212586 D 393595 CDS YP_692791.1 110833932 4213035 1213045..1214247 1 NC_008260.1 (3-oxoacyl-(acyl-carrier-protein) synthase II) identified by sequencesimilarity; InterPro: Beta-ketoacyl synthase; High confidence in function and specificity; 3-oxoacyl-ACP synthase 1214247 fabF 4213035 fabF Alcanivorax borkumensis SK2 3-oxoacyl-ACP synthase YP_692791.1 1213045 D 393595 CDS YP_692792.1 110833933 4211639 1214247..1215059 1 NC_008260.1 identified by sequence similarity; InterPro: Aminotransferases class-IV; High confidence in function and specificity; 4-amino-4-deoxychorismate lyase 1215059 pabC 4211639 pabC Alcanivorax borkumensis SK2 4-amino-4-deoxychorismate lyase YP_692792.1 1214247 D 393595 CDS YP_692793.1 110833934 4212833 1215070..1216128 1 NC_008260.1 (conserved hypothetical protein TIGR00247) identified by match to TIGR protein family HMMTIGR00247 InterPro: DUF175; hypothetical protein 1216128 4212833 ABO_1073 Alcanivorax borkumensis SK2 hypothetical protein YP_692793.1 1215070 D 393595 CDS YP_692794.1 110833935 4211410 1216125..1216751 1 NC_008260.1 (dTMP kinase; thymidine monophosphate kinase; thymidylate kinasethiol:disulfide interchange protein DsbD) identified by match to PFAM protein family HMMPF03772 InterPro: Thymidylate kinase; High confidence in function and specificity; dTMP kinase; thymidylate kinase 1216751 dsbD-2 4211410 dsbD-2 Alcanivorax borkumensis SK2 dTMP kinase; thymidylate kinase YP_692794.1 1216125 D 393595 CDS YP_692795.1 110833936 4211479 1216742..1217749 1 NC_008260.1 catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1217749 holB 4211479 holB Alcanivorax borkumensis SK2 DNA polymerase III subunit delta' YP_692795.1 1216742 D 393595 CDS YP_692796.1 110833937 4211387 1217792..1218139 1 NC_008260.1 type IV pilus biogenesis protein, identified by sequence similarity to Pseudomonas syringae pv. tomato str. DC3000; High confidence in function and specificity; type IV fimbriae assembly protein 1218139 pilZ 4211387 pilZ Alcanivorax borkumensis SK2 type IV fimbriae assembly protein YP_692796.1 1217792 D 393595 CDS YP_692797.1 110833938 4211989 1218311..1219132 1 NC_008260.1 identified by match to PFAM protein family HMMPF01026 InterPro: Uncharacterized protein family UPF0006; Family membership; TatD family deoxyribonuclease 1219132 tatD 4211989 tatD Alcanivorax borkumensis SK2 TatD family deoxyribonuclease YP_692797.1 1218311 D 393595 CDS YP_692798.1 110833939 4212834 1219129..1220445 1 NC_008260.1 identified by match to PFAM protein family HMMPF02646 InterPro: DUF195 shows 46 38dentitie to a rumC family protein. This family contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures; hypothetical protein 1220445 4212834 ABO_1078 Alcanivorax borkumensis SK2 hypothetical protein YP_692798.1 1219129 D 393595 CDS YP_692799.1 110833940 4212835 1220730..1222379 1 NC_008260.1 InterPro: Serine proteases trypsin family; Family membership; serine endopeptidase 1222379 4212835 ABO_1079 Alcanivorax borkumensis SK2 serine endopeptidase YP_692799.1 1220730 D 393595 CDS YP_692800.1 110833941 4212836 complement(1222347..1223210) 1 NC_008260.1 hypothetical protein 1223210 4212836 ABO_1080 Alcanivorax borkumensis SK2 hypothetical protein YP_692800.1 1222347 R 393595 CDS YP_692801.1 110833942 4212837 complement(1223238..1224371) 1 NC_008260.1 (aminotransferase, ) identified by sequencesimilarity; InterPro: Aminotransferase class-V; Family membership; aminotransferase 1224371 4212837 ABO_1081 Alcanivorax borkumensis SK2 aminotransferase YP_692801.1 1223238 R 393595 CDS YP_692802.1 110833943 4212838 1224580..1225215 1 NC_008260.1 transcriptional regulator TetR family identified by match to PFAM protein family HMMPF00440 InterPro: Bacterial regulatory proteins TetR family; Family membership; TetR family transcriptional regulator 1225215 4212838 ABO_1082 Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_692802.1 1224580 D 393595 CDS YP_692803.1 110833944 4212839 1225212..1225766 1 NC_008260.1 hypothetical protein 1225766 4212839 ABO_1083 Alcanivorax borkumensis SK2 hypothetical protein YP_692803.1 1225212 D 393595 CDS YP_692804.1 110833945 4212840 complement(1225840..1227546) 1 NC_008260.1 (pnk) identified by sequencesimilarity; InterPro: Serine/Threonine protein kinase; High confidence in function and specificity; serine (threonine) protein kinase 1227546 4212840 ABO_1084 Alcanivorax borkumensis SK2 serine (threonine) protein kinase YP_692804.1 1225840 R 393595 CDS YP_692805.1 110833946 4212841 complement(1227632..1229116) 1 NC_008260.1 identified by sequence similarity InterPro: General substrate transporters; High confidence in function and specificity; nitrate transport protein 1229116 4212841 ABO_1085 Alcanivorax borkumensis SK2 nitrate transport protein YP_692805.1 1227632 R 393595 CDS YP_692806.1 110833947 4211433 1229424..1231955 1 NC_008260.1 NirB; nitrite reductase [NAD(P)H] identified by sequence similarity; InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; High confidence in function and specificity; nitrite reductase 1231955 nirB 4211433 nirB Alcanivorax borkumensis SK2 nitrite reductase YP_692806.1 1229424 D 393595 CDS YP_692807.1 110833948 4211660 1231959..1232303 1 NC_008260.1 (nitrite reductase) identified by sequence similarity; InterPro: Rieske iron-sulfur protein 2Fe-2S subunit; High confidence in function and specificity; nitrite reductase small subunit 1232303 nirD 4211660 nirD Alcanivorax borkumensis SK2 nitrite reductase small subunit YP_692807.1 1231959 D 393595 CDS YP_692808.1 110833949 4212842 1232329..1233624 1 NC_008260.1 (NAD(P)H-nitrite reductase family protein identified by sequence similarity; InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Family membership; nitrite reductase family protein 1233624 4212842 ABO_1088 Alcanivorax borkumensis SK2 nitrite reductase family protein YP_692808.1 1232329 D 393595 CDS YP_692809.1 110833950 4211418 1233621..1236305 1 NC_008260.1 (probable nitrate reductase large subunit) identified by sequencesimilarity; InterPro: Prokaryotic molybdopterin oxidoreductases; Family membership; nitrate reductase large subunit 1236305 narB 4211418 narB Alcanivorax borkumensis SK2 nitrate reductase large subunit YP_692809.1 1233621 D 393595 CDS YP_692810.1 110833951 4213178 1236385..1237242 1 NC_008260.1 hypothetical protein 1237242 4213178 ABO_1090 Alcanivorax borkumensis SK2 hypothetical protein YP_692810.1 1236385 D 393595 CDS YP_692811.1 110833952 4213179 complement(1237297..1238127) 1 NC_008260.1 (cation transporter VIC family) identified by match to PFAM protein family HMMPF00914 InterPro: Cation channels (non-ligand gated); Family membership; potassium channel protein 1238127 4213179 ABO_1091 Alcanivorax borkumensis SK2 potassium channel protein YP_692811.1 1237297 R 393595 CDS YP_692812.1 110833953 4213488 complement(1238406..1239479) 1 NC_008260.1 catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 1239479 aroF-1 4213488 aroF-1 Alcanivorax borkumensis SK2 phospho-2-dehydro-3-deoxyheptonate aldolase YP_692812.1 1238406 R 393595 CDS YP_692813.1 110833954 4212471 complement(1239697..1240407) 1 NC_008260.1 Modulates the activities of several enzymes which are inactive in their acetylated form; NAD-dependent deacetylase 1240407 cobB 4212471 cobB Alcanivorax borkumensis SK2 NAD-dependent deacetylase YP_692813.1 1239697 R 393595 CDS YP_692814.1 110833955 4213180 1240453..1240827 1 NC_008260.1 hypothetical protein 1240827 4213180 ABO_1094 Alcanivorax borkumensis SK2 hypothetical protein YP_692814.1 1240453 D 393595 CDS YP_692815.1 110833956 4211572 1240954..1242486 1 NC_008260.1 identified by sequence similarity; InterPro: Carbon-nitrogen hydrolase; Family membership; hypothetical protein 1242486 yhcX 4211572 yhcX Alcanivorax borkumensis SK2 hypothetical protein YP_692815.1 1240954 D 393595 CDS YP_692816.1 110833957 4213181 1243755..1244609 1 NC_008260.1 identified by sequence similarity; hypothetical protein 1244609 4213181 ABO_1096 Alcanivorax borkumensis SK2 hypothetical protein YP_692816.1 1243755 D 393595 CDS YP_692817.1 110833958 4213182 1244623..1246155 1 NC_008260.1 identified by sequence similarity; InterPro: Flavin-containing monooxygenase (FMO); Family membership; monooxygenase flavin-binding family protein 1246155 4213182 ABO_1097 Alcanivorax borkumensis SK2 monooxygenase flavin-binding family protein YP_692817.1 1244623 D 393595 CDS YP_692818.1 110833959 4212632 1246547..1247293 1 NC_008260.1 (Ribosomal small subunit pseudouridine synthase A ) identified by match to PFAM protein family HMMPF01479 InterPro: Conserved hypothetical protein 93; High confidence in function and specificity; ribosomal small subunit pseudouridine synthase A 1247293 rsuA 4212632 rsuA Alcanivorax borkumensis SK2 ribosomal small subunit pseudouridine synthase A YP_692818.1 1246547 D 393595 CDS YP_692819.1 110833960 4213183 complement(1247374..1248258) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Bacterial regulatory protein LysR family; Specificity unclear; LysR family transcriptional regulator 1248258 4213183 ABO_1099 Alcanivorax borkumensis SK2 LysR family transcriptional regulator YP_692819.1 1247374 R 393595 CDS YP_692820.1 110833961 4213022 complement(1248686..1250341) 1 NC_008260.1 electron transfer flavoprotein-ubiquinone oxidoreductase, (electron transfer flavoprotein-ubiquinoneoxidoreductase ) identified by match to PFAM protein family HMMPF03545; High confidence in function and specificity; electron transfer flavoprotein-ubiquinone oxidoreductase 1250341 etf 4213022 etf Alcanivorax borkumensis SK2 electron transfer flavoprotein-ubiquinone oxidoreductase YP_692820.1 1248686 R 393595 CDS YP_692821.1 110833962 4213024 1250806..1251555 1 NC_008260.1 identified by sequencesimilarity; InterPro: Electron transfer flavoprotein beta-subunit; High confidence in function and specificity; electron transfer flavoprotein subunit beta 1251555 etfB 4213024 etfB Alcanivorax borkumensis SK2 electron transfer flavoprotein subunit beta YP_692821.1 1250806 D 393595 CDS YP_692822.1 110833963 4213023 1251555..1252484 1 NC_008260.1 identified by sequencesimilarity; InterPro: Electron transfer flavoprotein alpha-subunit; High confidence in function and specificity; electron transfer flavoprotein subunit alpha 1252484 etfA 4213023 etfA Alcanivorax borkumensis SK2 electron transfer flavoprotein subunit alpha YP_692822.1 1251555 D 393595 CDS YP_692823.1 110833964 4211806 1252740..1253522 1 NC_008260.1 identified by match to PFAM protein family HMMPF00106 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; short-chain acyl CoA dehydrogenase 1253522 acdS 4211806 acdS Alcanivorax borkumensis SK2 short-chain acyl CoA dehydrogenase YP_692823.1 1252740 D 393595 CDS YP_692824.1 110833965 4213184 1253658..1255754 1 NC_008260.1 outer membrane siderophore receptor identified by sequence similarity; InterPro: TonB-dependent receptor protein; Function unclear; outer membrane siderophore receptor 1255754 4213184 ABO_1104 Alcanivorax borkumensis SK2 outer membrane siderophore receptor YP_692824.1 1253658 D 393595 CDS YP_692825.1 110833966 4213185 1255754..1257148 1 NC_008260.1 hypothetical protein 1257148 4213185 ABO_1105 Alcanivorax borkumensis SK2 hypothetical protein YP_692825.1 1255754 D 393595 CDS YP_692826.1 110833967 4213186 1257725..1259287 1 NC_008260.1 hypothetical protein 1259287 4213186 ABO_1106 Alcanivorax borkumensis SK2 hypothetical protein YP_692826.1 1257725 D 393595 CDS YP_692827.1 110833968 4213187 1259281..1260216 1 NC_008260.1 identified by match to PFAM protein family HMMPF04168; hypothetical protein 1260216 4213187 ABO_1107 Alcanivorax borkumensis SK2 hypothetical protein YP_692827.1 1259281 D 393595 CDS YP_692828.1 110833969 4213188 1260207..1261004 1 NC_008260.1 identified by match to PFAM protein family HMMPF01841 InterPro: Transglutaminase-like superfamily; Family membership; transglutaminase 1261004 4213188 ABO_1108 Alcanivorax borkumensis SK2 transglutaminase YP_692828.1 1260207 D 393595 CDS YP_692829.1 110833970 4213189 1261024..1261743 1 NC_008260.1 conserved hypothetical protein identified by match to PFAM protein family HMMPF00227 InterPro: Multispecific proteasome proteases; hypothetical protein 1261743 4213189 ABO_1109 Alcanivorax borkumensis SK2 hypothetical protein YP_692829.1 1261024 D 393595 CDS YP_692830.1 110833971 4213190 complement(1262017..1264053) 1 NC_008260.1 (conserved hypothetical protein) identified by match to PFAM protein family HMMPF04185 InterPro: Sulfatase; phosphoglycerol transferase 1264053 4213190 ABO_1110 Alcanivorax borkumensis SK2 phosphoglycerol transferase YP_692830.1 1262017 R 393595 CDS YP_692831.1 110833972 4213191 1264273..1265058 1 NC_008260.1 (tesA)(acyl-CoA thioesterase II) identified by match to PFAM protein family HMMPF02551; High confidence in function and specificity; tesB-like acyl-CoA thioesterase 1265058 4213191 ABO_1111 Alcanivorax borkumensis SK2 tesB-like acyl-CoA thioesterase YP_692831.1 1264273 D 393595 CDS YP_692832.1 110833973 4213192 1265055..1265699 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00530 InterPro: Phospholipid and glycerol acyltransferase (from motifs_6.msf); Family membership; acyltransferase 1265699 4213192 ABO_1112 Alcanivorax borkumensis SK2 acyltransferase YP_692832.1 1265055 D 393595 CDS YP_692833.1 110833974 4213193 complement(1265701..1266930) 1 NC_008260.1 sensor histidine kinase/response regulator identified by sequencesimilarity; InterPro: GAF domain; Function unclear; sensor histidine kinase/response regulator 1266930 4213193 ABO_1113 Alcanivorax borkumensis SK2 sensor histidine kinase/response regulator YP_692833.1 1265701 R 393595 CDS YP_692834.1 110833975 4211795 1267099..1267365 1 NC_008260.1 (acdP) identified by sequence similarity; High confidence in function and specificity; acyl-CoA-binding protein 1267365 ACBP 4211795 ACBP Alcanivorax borkumensis SK2 acyl-CoA-binding protein YP_692834.1 1267099 D 393595 CDS YP_692835.1 110833976 4213194 complement(1267582..1268649) 1 NC_008260.1 (membrane protein, ) identified by match to PFAM protein family HMMPF00892; Function unclear; hypothetical protein 1268649 4213194 ABO_1115 Alcanivorax borkumensis SK2 hypothetical protein YP_692835.1 1267582 R 393595 CDS YP_692836.1 110833977 4213195 1268675..1269436 1 NC_008260.1 hypothetical protein 1269436 4213195 ABO_1116 Alcanivorax borkumensis SK2 hypothetical protein YP_692836.1 1268675 D 393595 CDS YP_692837.1 110833978 4213196 1269436..1269753 1 NC_008260.1 hypothetical protein 1269753 4213196 ABO_1117 Alcanivorax borkumensis SK2 hypothetical protein YP_692837.1 1269436 D 393595 CDS YP_692838.1 110833979 4211586 complement(1269849..1270100) 1 NC_008260.1 identified by sequencesimilarity; High confidence in function and specificity; cell division topological specificity factor MinE 1270100 minE 4211586 minE Alcanivorax borkumensis SK2 cell division topological specificity factor MinE YP_692838.1 1269849 R 393595 CDS YP_692839.1 110833980 4211585 complement(1270104..1270994) 1 NC_008260.1 identified by sequencesimilarity; InterPro: ParA family ATPase; High confidence in function and specificity; septum site-determining protein MinD 1270994 minD 4211585 minD Alcanivorax borkumensis SK2 septum site-determining protein MinD YP_692839.1 1270104 R 393595 CDS YP_692840.1 110833981 4211584 complement(1270952..1271683) 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; septum site-determining protein MinC 1271683 minC 4211584 minC Alcanivorax borkumensis SK2 septum site-determining protein MinC YP_692840.1 1270952 R 393595 CDS YP_692841.1 110833982 4211864 complement(1272030..1274486) 1 NC_008260.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 1274486 fadE 4211864 fadE Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_692841.1 1272030 R 393595 CDS YP_692842.1 110833983 4211826 1274696..1275565 1 NC_008260.1 identified by match to PFAM protein family HMMPF00085 InterPro: Thioredoxin; Function unclear; thioredoxin 1275565 trx-1 4211826 trx-1 Alcanivorax borkumensis SK2 thioredoxin YP_692842.1 1274696 D 393595 CDS YP_692843.1 110833984 4211186 1275901..1276239 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF00543 InterPro: Nitrogen regulatory protein P-II; High confidence in function and specificity; nitrogen regulatory protein P-II 1276239 glnK-1 4211186 glnK-1 Alcanivorax borkumensis SK2 nitrogen regulatory protein P-II YP_692843.1 1275901 D 393595 CDS YP_692844.1 110833985 4213409 1276250..1277536 1 NC_008260.1 Ammonium transporter, Ammonium Transporter Family,amt: ammonium transporter; High confidence in function and specificity; ammonium transporter 1277536 amtB1 4213409 amtB1 Alcanivorax borkumensis SK2 ammonium transporter YP_692844.1 1276250 D 393595 CDS YP_692845.1 110833986 4213197 1277764..1278150 1 NC_008260.1 hypothetical protein 1278150 4213197 ABO_1125 Alcanivorax borkumensis SK2 hypothetical protein YP_692845.1 1277764 D 393595 CDS YP_692846.1 110833987 4211358 complement(1278243..1278797) 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; molybdopterin-guanine dinucleotide biosynthesis protein A 1278797 mobA 4211358 mobA Alcanivorax borkumensis SK2 molybdopterin-guanine dinucleotide biosynthesis protein A YP_692846.1 1278243 R 393595 CDS YP_692847.1 110833988 4211576 1278870..1280876 1 NC_008260.1 (helicase ) identified by match to TIGR protein family HMMTIGR01407; Specificity unclear; ATP-dependent helicase 1280876 yoaA 4211576 yoaA Alcanivorax borkumensis SK2 ATP-dependent helicase YP_692847.1 1278870 D 393595 CDS YP_692848.1 110833989 4212416 1280873..1281547 1 NC_008260.1 identified by sequence similarity; InterPro: Glycoprotease (M22) metallo-protease family; hypothetical protein 1281547 4212416 ABO_1128 Alcanivorax borkumensis SK2 hypothetical protein YP_692848.1 1280873 D 393595 CDS YP_692849.1 110833990 4212417 1281544..1281978 1 NC_008260.1 (conserved hypothetical protein TIGR00051) identified by match to PFAM protein family HMMPF03061 InterPro: 4-hydroxybenzoyl-CoA thioesterase family active site; hypothetical protein 1281978 4212417 ABO_1129 Alcanivorax borkumensis SK2 hypothetical protein YP_692849.1 1281544 D 393595 CDS YP_692850.1 110833991 4212129 1282086..1282883 1 NC_008260.1 identified by match to PFAM protein family HMMPF02673 InterPro: Bacitracin resistance protein BacA; Function unclear; bacitracin resistance protein BacA/undecaprenol kinase 1282883 bacA 4212129 bacA Alcanivorax borkumensis SK2 bacitracin resistance protein BacA/undecaprenol kinase YP_692850.1 1282086 D 393595 CDS YP_692851.1 110833992 4212418 1282880..1283623 1 NC_008260.1 hypothetical protein 1283623 4212418 ABO_1131 Alcanivorax borkumensis SK2 hypothetical protein YP_692851.1 1282880 D 393595 CDS YP_692852.1 110833993 4211390 complement(1283699..1286200) 1 NC_008260.1 PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase 1286200 plsB 4211390 plsB Alcanivorax borkumensis SK2 glycerol-3-phosphate acyltransferase YP_692852.1 1283699 R 393595 CDS YP_692853.1 110833994 4212419 1286380..1287270 1 NC_008260.1 identified by match to PFAM protein family HMMPF04261; Family membership; Dyp-type peroxidase family protein 1287270 4212419 ABO_1133 Alcanivorax borkumensis SK2 Dyp-type peroxidase family protein YP_692853.1 1286380 D 393595 CDS YP_692854.1 110833995 4212420 complement(1287748..1289349) 1 NC_008260.1 aldehyde dehydrogenase family protein identified by match to TIGR protein family HMMTIGR01722 InterPro: Aldehyde dehydrogenase family; Specificity unclear; succinate-semialdehyde dehydrogenase 1289349 4212420 ABO_1134 Alcanivorax borkumensis SK2 succinate-semialdehyde dehydrogenase YP_692854.1 1287748 R 393595 CDS YP_692855.1 110833996 4212421 complement(1289492..1291612) 1 NC_008260.1 efflux transporter permease protein Specificity unclear; efflux transporter permease 1291612 4212421 ABO_1135 Alcanivorax borkumensis SK2 efflux transporter permease YP_692855.1 1289492 R 393595 CDS YP_692856.1 110833997 4212422 complement(1291593..1292468) 1 NC_008260.1 (efflux transporter, membrane fusion protein, ) identified by match to TIGR protein family HMMTIGR01730 InterPro: HlyD family secretion protein; Family membership; efflux transporter, membrane fusion protein 1292468 4212422 ABO_1136 Alcanivorax borkumensis SK2 efflux transporter, membrane fusion protein YP_692856.1 1291593 R 393595 CDS YP_692857.1 110833998 4213289 complement(1292829..1293962) 1 NC_008260.1 dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1293962 dapE 4213289 dapE Alcanivorax borkumensis SK2 succinyl-diaminopimelate desuccinylase YP_692857.1 1292829 R 393595 CDS YP_692858.1 110833999 4213288 complement(1294055..1295089) 1 NC_008260.1 (N-succinyltransferase ) identified by match to TIGR protein family HMMTIGR00965; High confidence in function and specificity; tetrahydrodipicolinate N-succinyltransferase 1295089 dapD 4213288 dapD Alcanivorax borkumensis SK2 tetrahydrodipicolinate N-succinyltransferase YP_692858.1 1294055 R 393595 CDS YP_692859.1 110834000 4212423 complement(1295172..1295543) 1 NC_008260.1 Conserved hypothetical protein ArsC related, Pfam: ArsC family, arsC_related: conserved hypothetical protein; arsC-like protein 1295543 4212423 ABO_1139 Alcanivorax borkumensis SK2 arsC-like protein YP_692859.1 1295172 R 393595 CDS YP_692860.1 110834001 4212424 complement(1295683..1296963) 1 NC_008260.1 catalyzes the formation of succinyldiaminopimelate from N-succinyl-2-amino-6-ketopimelate; succinyldiaminopimelate transaminase 1296963 4212424 ABO_1140 Alcanivorax borkumensis SK2 succinyldiaminopimelate transaminase YP_692860.1 1295683 R 393595 CDS YP_692861.1 110834002 4211184 complement(1296869..1299541) 1 NC_008260.1 Catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 1299541 glnD 4211184 glnD Alcanivorax borkumensis SK2 PII uridylyl-transferase YP_692861.1 1296869 R 393595 CDS YP_692862.1 110834003 4211497 complement(1299542..1300531) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00557 and TIGR FAM TIGR00500 InterPro: Methionine aminopeptidase subfamily 1; Family membership; methionine aminopeptidase 1300531 map 4211497 map Alcanivorax borkumensis SK2 methionine aminopeptidase YP_692862.1 1299542 R 393595 CDS YP_692863.1 110834004 4212372 1300635..1301393 1 NC_008260.1 identified by sequencesimilarity; InterPro: Ribosomal protein S2; High confidence in function and specificity; 30S ribosomal protein S2 1301393 rpsB 4212372 rpsB Alcanivorax borkumensis SK2 30S ribosomal protein S2 YP_692863.1 1300635 D 393595 CDS YP_692864.1 110834005 4211829 1301397..1302338 1 NC_008260.1 (translation elongation factor Ts) identified by sequencesimilarity; InterPro: Elongation factor Ts; High confidence in function and specificity; translation elongation factor Ts 1302338 tsf 4211829 tsf Alcanivorax borkumensis SK2 translation elongation factor Ts YP_692864.1 1301397 D 393595 CDS YP_692865.1 110834006 4211643 1302561..1303319 1 NC_008260.1 Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 1303319 pyrH 4211643 pyrH Alcanivorax borkumensis SK2 uridylate kinase YP_692865.1 1302561 D 393595 CDS YP_692866.1 110834007 4211551 1303357..1303914 1 NC_008260.1 Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 1303914 frr 4211551 frr Alcanivorax borkumensis SK2 ribosome recycling factor YP_692866.1 1303357 D 393595 CDS YP_692867.1 110834008 4211729 1303990..1304772 1 NC_008260.1 identified by sequence similarity; InterPro: UDP pyrophosphate synthetase family; High confidence in function and specificity; UDP diphosphate synthase 1304772 uppS 4211729 uppS Alcanivorax borkumensis SK2 UDP diphosphate synthase YP_692867.1 1303990 D 393595 CDS YP_692868.1 110834009 4212976 1304772..1305596 1 NC_008260.1 (phosphatidate cytidylyltransferase, CDP-diglyceride synthetase) identified by match to PFAM protein family HMMPF01148 InterPro: Phosphatidate cytidylyltransferase (CDP-diglyceride synthetase); High confidence in function and specificity; phosphatidate cytidylyltransferase 1305596 cdsA 4212976 cdsA Alcanivorax borkumensis SK2 phosphatidate cytidylyltransferase YP_692868.1 1304772 D 393595 CDS YP_692869.1 110834010 4213337 1305593..1306807 1 NC_008260.1 catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1306807 dxr 4213337 dxr Alcanivorax borkumensis SK2 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_692869.1 1305593 D 393595 CDS YP_692870.1 110834011 4212425 1306801..1308108 1 NC_008260.1 identified by match to PFAM protein family HMMPF02163 InterPro: membrane-associated zinc metalloprotease; Function unclear; zinc metalloprotease 1308108 4212425 ABO_1150 Alcanivorax borkumensis SK2 zinc metalloprotease YP_692870.1 1306801 D 393595 CDS YP_692871.1 110834012 4212426 1308105..1310468 1 NC_008260.1 (bacterial surface antigen family protein) identified by match to PFAM protein family HMMPF01103 InterPro: Bacterial surface antigen (D15); Family membership; outer membrane protein surface antigen family protein 1310468 4212426 ABO_1151 Alcanivorax borkumensis SK2 outer membrane protein surface antigen family protein YP_692871.1 1308105 D 393595 CDS YP_692872.1 110834013 4211626 1310479..1310976 1 NC_008260.1 (outer membrane protein OmpH) identified by match to PFAM protein family HMMPF03938; Function unclear; outer membrane protein OmpH 1310976 ompH 4211626 ompH Alcanivorax borkumensis SK2 outer membrane protein OmpH YP_692872.1 1310479 D 393595 CDS YP_692873.1 110834014 4211463 1310976..1311986 1 NC_008260.1 identified by match to PFAM protein family HMMPF00132 udp-3-o-(3-hydroxytetradecanoyl)glucosamine + (r)-3-hydroxytetradecanoyl-[acyl-carrier protein] = udp-2,3-bis(3- hydroxytetradecanoyl)glucosamine + [acyl-carrier protein]; High confidence in function and specificity; UDP-3-O-[3-hydroxymyristoyl] glucosaminen-acyltransferase 1311986 lpxD 4211463 lpxD Alcanivorax borkumensis SK2 UDP-3-O-[3-hydroxymyristoyl] glucosaminen-acyltransferase YP_692873.1 1310976 D 393595 CDS YP_692874.1 110834015 4213039 1312014..1312463 1 NC_008260.1 identified by sequencesimilarity; InterPro: Bacterial thioester dehydrase; High confidence in function and specificity; (3R)-hydroxymyristoyl-ACP dehydratase 1312463 fabZ 4213039 fabZ Alcanivorax borkumensis SK2 (3R)-hydroxymyristoyl-ACP dehydratase YP_692874.1 1312014 D 393595 CDS YP_692875.1 110834016 4211460 1312537..1313304 1 NC_008260.1 (acyl-[acyl-carrier-protein]--UDP-N-acetylglucosami ne O-acyltransferase); High confidence in function and specificity; acyl-ACP-UDP-N- acetylglucosamine O-acyltransferase 1313304 lpxA 4211460 lpxA Alcanivorax borkumensis SK2 acyl-ACP-UDP-N- acetylglucosamine O-acyltransferase YP_692875.1 1312537 D 393595 CDS YP_692876.1 110834017 4211461 1313306..1314457 1 NC_008260.1 High confidence in function and specificity; lipid A disaccharide synthase 1314457 lpxB 4211461 lpxB Alcanivorax borkumensis SK2 lipid A disaccharide synthase YP_692876.1 1313306 D 393595 CDS YP_692877.1 110834018 4212167 1314457..1315119 1 NC_008260.1 (ribonuclease HII) identified by sequence similarity; InterPro: Ribonuclease HII and HIII; High confidence in function and specificity; ribonuclease H 1315119 rnhB 4212167 rnhB Alcanivorax borkumensis SK2 ribonuclease H YP_692877.1 1314457 D 393595 CDS YP_692878.1 110834019 4211397 1315116..1318616 1 NC_008260.1 catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1318616 dnaE 4211397 dnaE Alcanivorax borkumensis SK2 DNA polymerase III subunit alpha YP_692878.1 1315116 D 393595 CDS YP_692879.1 110834020 4211797 1318963..1319934 1 NC_008260.1 catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 1319934 accA 4211797 accA Alcanivorax borkumensis SK2 acetyl-CoA carboxylase carboxyltransferase subunit alpha YP_692879.1 1318963 D 393595 CDS YP_692880.1 110834021 4211500 1319937..1321238 1 NC_008260.1 identified by sequence similarity; Specificity unclear; cell cycle protein MesJ 1321238 mesJ 4211500 mesJ Alcanivorax borkumensis SK2 cell cycle protein MesJ YP_692880.1 1319937 D 393595 CDS YP_692881.1 110834022 4212032 1321403..1323313 1 NC_008260.1 High confidence in function and specificity; ATP-dependent DNA helicase RecQ 1323313 recQ 4212032 recQ Alcanivorax borkumensis SK2 ATP-dependent DNA helicase RecQ YP_692881.1 1321403 D 393595 CDS YP_692882.1 110834023 4211642 1323646..1325283 1 NC_008260.1 CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1325283 pyrG 4211642 pyrG Alcanivorax borkumensis SK2 CTP synthetase YP_692882.1 1323646 D 393595 CDS YP_692883.1 110834024 4211214 1325287..1326135 1 NC_008260.1 catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1326135 kdsA-1 4211214 kdsA-1 Alcanivorax borkumensis SK2 2-dehydro-3-deoxyphosphooctonate aldolase YP_692883.1 1325287 D 393595 CDS YP_692884.1 110834025 4213348 1326159..1327451 1 NC_008260.1 (enolase (2-phosphoglycerate dehydratase) (2-phospho-d-glycerate hydro-lyase)) identified by sequencesimilarity; InterPro: Enolase; High confidence in function and specificity; enolase 1327451 eno 4213348 eno Alcanivorax borkumensis SK2 enolase YP_692884.1 1326159 D 393595 CDS YP_692885.1 110834026 4212427 1327452..1327823 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 1327823 4212427 ABO_1165 Alcanivorax borkumensis SK2 hypothetical protein YP_692885.1 1327452 D 393595 CDS YP_692886.1 110834027 4211206 1327883..1328542 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00453 InterPro: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; High confidence in function and specificity; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase 1328542 ispD 4211206 ispD Alcanivorax borkumensis SK2 4-diphosphocytidyl-2C-methyl-D-erythritol synthase YP_692886.1 1327883 D 393595 CDS YP_692887.1 110834028 4211208 1328536..1329018 1 NC_008260.1 identified by match to PFAM protein family HMMPF02542 InterPro: 2C-methyl-D-erythritol 24-cyclodiphosphate synthase; High confidence in function and specificity; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1329018 ispF 4211208 ispF Alcanivorax borkumensis SK2 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_692887.1 1328536 D 393595 CDS YP_692888.1 110834029 4212428 1329015..1330070 1 NC_008260.1 conserved hypothetical protein identified by match to TIGR protein family HMMTIGR00094 InterPro: Uncharacterized protein family UPF0024; hypothetical protein 1330070 4212428 ABO_1168 Alcanivorax borkumensis SK2 hypothetical protein YP_692888.1 1329015 D 393595 CDS YP_692889.1 110834030 4212444 1330096..1330758 1 NC_008260.1 (protein-L-isoaspartate O-methyltransferase) identified by match to TIGR protein family HMMTIGR00080 InterPro: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; High confidence in function and specificity; protein-L-isoaspartate(D-aspartate) O-methyltransferase 1330758 pcm 4212444 pcm Alcanivorax borkumensis SK2 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_692889.1 1330096 D 393595 CDS YP_692890.1 110834031 4212429 1330872..1331783 1 NC_008260.1 hypothetical protein 1331783 4212429 ABO_1170 Alcanivorax borkumensis SK2 hypothetical protein YP_692890.1 1330872 D 393595 CDS YP_692891.1 110834032 4211661 1331892..1332653 1 NC_008260.1 (lipoprotein NlpD) identified by sequence similarity; InterPro: Peptidase family M23/M37; Function unclear; lipoprotein NlpD 1332653 nlpD 4211661 nlpD Alcanivorax borkumensis SK2 lipoprotein NlpD YP_692891.1 1331892 D 393595 CDS YP_692892.1 110834033 4212430 1332683..1333597 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01297 InterPro: Cation efflux family; Family membership; cation efflux family protein 1333597 4212430 ABO_1172 Alcanivorax borkumensis SK2 cation efflux family protein YP_692892.1 1332683 D 393595 CDS YP_692893.1 110834034 4212431 1333731..1334372 1 NC_008260.1 hypothetical protein 1334372 4212431 ABO_1173 Alcanivorax borkumensis SK2 hypothetical protein YP_692893.1 1333731 D 393595 CDS YP_692894.1 110834035 4212432 1334369..1335934 1 NC_008260.1 identified by sequence similarity; InterPro: Glucose-methanol-choline (GMC) oxidoreductase; Family membership; GMC oxidoreductase family protein 1335934 4212432 ABO_1174 Alcanivorax borkumensis SK2 GMC oxidoreductase family protein YP_692894.1 1334369 D 393595 CDS YP_692895.1 110834036 4212433 1336222..1337376 1 NC_008260.1 (alcohol dehydrogenase iron-containing) identified by match to PFAM protein family HMMPF00465 InterPro: Iron-containing alcohol dehydrogenase; High confidence in function and specificity; iron-containing alcohol dehydrogenase 1337376 4212433 ABO_1175 Alcanivorax borkumensis SK2 iron-containing alcohol dehydrogenase YP_692895.1 1336222 D 393595 CDS YP_692896.1 110834037 4212434 1337431..1337874 1 NC_008260.1 (conserved hypothetical protein TIGR00051) identified by match to PFAM protein family HMMPF03061 InterPro: 4-hydroxybenzoyl-CoA thioesterase family active site; hypothetical protein 1337874 4212434 ABO_1176 Alcanivorax borkumensis SK2 hypothetical protein YP_692896.1 1337431 D 393595 CDS YP_692897.1 110834038 4212449 1337956..1339116 1 NC_008260.1 identified by sequence similarity; InterPro: D-isomer specific 2-hydroxyacid dehydrogenase; High confidence in function and specificity; erythronate-4-phosphate dehydrogenase 1339116 pdxB 4212449 pdxB Alcanivorax borkumensis SK2 erythronate-4-phosphate dehydrogenase YP_692897.1 1337956 D 393595 CDS YP_692898.1 110834039 4213451 complement(1339091..1339264) 1 NC_008260.1 hypothetical protein 1339264 4213451 ABO_1178 Alcanivorax borkumensis SK2 hypothetical protein YP_692898.1 1339091 R 393595 CDS YP_692899.1 110834040 4213452 1339420..1340502 1 NC_008260.1 (conserved hypothetical protein TIGR00147) identified by sequencesimilarity; Function unclear; hypothetical protein 1340502 4213452 ABO_1179 Alcanivorax borkumensis SK2 hypothetical protein YP_692899.1 1339420 D 393595 CDS YP_692900.1 110834041 4211338 complement(1340649..1341545) 1 NC_008260.1 metalloprotease; heat shock protein HtpX 1341545 htpX 4211338 htpX Alcanivorax borkumensis SK2 heat shock protein HtpX YP_692900.1 1340649 R 393595 CDS YP_692901.1 110834042 4213453 1341727..1342701 1 NC_008260.1 identified by match to PFAM protein family HMMPF03602; hypothetical protein 1342701 4213453 ABO_1181 Alcanivorax borkumensis SK2 hypothetical protein YP_692901.1 1341727 D 393595 CDS YP_692902.1 110834043 4213454 complement(1342793..1343326) 1 NC_008260.1 hypothetical protein 1343326 4213454 ABO_1182 Alcanivorax borkumensis SK2 hypothetical protein YP_692902.1 1342793 R 393595 CDS YP_692903.1 110834044 4213455 complement(1343347..1344576) 1 NC_008260.1 broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase 1344576 4213455 ABO_1183 Alcanivorax borkumensis SK2 aminotransferase YP_692903.1 1343347 R 393595 CDS YP_692904.1 110834045 4213456 1344684..1345352 1 NC_008260.1 identified by match to PFAM protein family HMMPF03352; hypothetical protein 1345352 4213456 ABO_1184 Alcanivorax borkumensis SK2 hypothetical protein YP_692904.1 1344684 D 393595 CDS YP_692905.1 110834046 4213457 1345461..1347371 1 NC_008260.1 identified by match to PFAM protein family HMMPF03675 InterPro: Cytochrome c class I; Family membership; cytochrome c family protein 1347371 4213457 ABO_1185 Alcanivorax borkumensis SK2 cytochrome c family protein YP_692905.1 1345461 D 393595 CDS YP_692906.1 110834047 4213458 1347754..1348716 1 NC_008260.1 identified by sequence similarity; InterPro: CorA-like Mg2+ transporter protein; Family membership; magnesium/cobalt transporter CorA 1348716 4213458 ABO_1186 Alcanivorax borkumensis SK2 magnesium/cobalt transporter CorA YP_692906.1 1347754 D 393595 CDS YP_692907.1 110834048 4213459 complement(1348757..1349275) 1 NC_008260.1 identified by Glimmer2; hypothetical protein 1349275 4213459 ABO_1187 Alcanivorax borkumensis SK2 hypothetical protein YP_692907.1 1348757 R 393595 CDS YP_692908.1 110834049 4212575 complement(1349238..1350884) 1 NC_008260.1 (sulphite reductase hemoprotein beta subunit) identified by sequence similarity; InterPro: Nitrite and sulfite reductase; High confidence in function and specificity; sulfite reductase 1350884 cysI 4212575 cysI Alcanivorax borkumensis SK2 sulfite reductase YP_692908.1 1349238 R 393595 CDS YP_692909.1 110834050 4213460 complement(1351018..1351269) 1 NC_008260.1 hypothetical protein 1351269 4213460 ABO_1189 Alcanivorax borkumensis SK2 hypothetical protein YP_692909.1 1351018 R 393595 CDS YP_692910.1 110834051 4213461 1351538..1352134 1 NC_008260.1 yhgI protein identified by sequence similarity; InterPro: Hypothetical hesB/yadR/yfhF family; hypothetical protein 1352134 4213461 ABO_1190 Alcanivorax borkumensis SK2 hypothetical protein YP_692910.1 1351538 D 393595 CDS YP_692911.1 110834052 4213462 complement(1352265..1353053) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01435; hypothetical protein 1353053 4213462 ABO_1191 Alcanivorax borkumensis SK2 hypothetical protein YP_692911.1 1352265 R 393595 CDS YP_692912.1 110834053 4212241 complement(1353062..1354852) 1 NC_008260.1 (ABC1 family protein, ubiquinone biosynthesis protein) identified by sequence similarity; InterPro: ABC1 family; Family membership; ABC1 family protein, ubiquinone biosynthesis protein 1354852 aarF 4212241 aarF Alcanivorax borkumensis SK2 ABC1 family protein, ubiquinone biosynthesis protein YP_692912.1 1353062 R 393595 CDS YP_692913.1 110834054 4213463 1354906..1355229 1 NC_008260.1 (SET domain protein lysine methyltransferase, ) InterPro: SET-domain of transcriptional regulators (TRX EZ ASH1 etc); Family membership; lysine methyltransferase 1355229 4213463 ABO_1193 Alcanivorax borkumensis SK2 lysine methyltransferase YP_692913.1 1354906 D 393595 CDS YP_692914.1 110834055 4212109 complement(1355244..1355933) 1 NC_008260.1 (pseudouridylate synthase)(uracil hydrolyase).; High confidence in function and specificity; ribosomal large subunit pseudouridine synthase A 1355933 rluA 4212109 rluA Alcanivorax borkumensis SK2 ribosomal large subunit pseudouridine synthase A YP_692914.1 1355244 R 393595 CDS YP_692915.1 110834056 4211458 complement(1355908..1358292) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00004 InterPro: ATP-dependent protease La; High confidence in function and specificity; ATP-dependent protease La 1358292 lon-1 4211458 lon-1 Alcanivorax borkumensis SK2 ATP-dependent protease La YP_692915.1 1355908 R 393595 CDS YP_692916.1 110834057 4213464 complement(1358347..1358982) 1 NC_008260.1 identified by sequence similarity. InterPro: SAM (and some other nucleotide) binding motif; hypothetical protein 1358982 4213464 ABO_1196 Alcanivorax borkumensis SK2 hypothetical protein YP_692916.1 1358347 R 393595 CDS YP_692917.1 110834058 4213465 complement(1359332..1360288) 1 NC_008260.1 Carboxylic ester hydrolases identified by sequencesimilarity; InterPro: Alpha/beta hydrolase fold; Family membership; carboxylic ester hydrolase 1360288 4213465 ABO_1197 Alcanivorax borkumensis SK2 carboxylic ester hydrolase YP_692917.1 1359332 R 393595 CDS YP_692918.1 110834059 4213466 complement(1360468..1361313) 1 NC_008260.1 membrane protein identified by match to PFAM protein family HMMPF00892 InterPro: Integral membrane protein DUF6; Function unclear; hypothetical protein 1361313 4213466 ABO_1198 Alcanivorax borkumensis SK2 hypothetical protein YP_692918.1 1360468 R 393595 CDS YP_692919.1 110834060 4213467 1361558..1362073 1 NC_008260.1 (2-5 RNA ligase ) identified by sequence similarity; hypothetical protein 1362073 4213467 ABO_1199 Alcanivorax borkumensis SK2 hypothetical protein YP_692919.1 1361558 D 393595 CDS YP_692920.1 110834061 4213468 1362238..1362870 1 NC_008260.1 (conserved hypothetical protein TIGR00481) identified by sequence similarity.; hypothetical protein 1362870 4213468 ABO_1200 Alcanivorax borkumensis SK2 hypothetical protein YP_692920.1 1362238 D 393595 CDS YP_692921.1 110834062 4211813 complement(1363973..1366573) 1 NC_008260.1 catalyzes the conversion of citrate to isocitrate and the conversion of 2-methylaconitate to 2-methylisocitrate; bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 1366573 acnB 4211813 acnB Alcanivorax borkumensis SK2 bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase YP_692921.1 1363973 R 393595 CDS YP_692922.1 110834063 4211466 complement(1366767..1367675) 1 NC_008260.1 (lipid A biosynthesis lauroyl acyltransferase; ) identified by sequence similarity; High confidence in function and specificity; lipid A biosynthesis lauroyl acyltransferase 1367675 lpxL2 4211466 lpxL2 Alcanivorax borkumensis SK2 lipid A biosynthesis lauroyl acyltransferase YP_692922.1 1366767 R 393595 CDS YP_692923.1 110834064 4211583 1367796..1368410 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; tRNA-(ms(2)io(6)a)-hydroxylase 1368410 miaE 4211583 miaE Alcanivorax borkumensis SK2 tRNA-(ms(2)io(6)a)-hydroxylase YP_692923.1 1367796 D 393595 CDS YP_692924.1 110834065 4213469 complement(1368523..1369254) 1 NC_008260.1 Family membership; UDP-2,3-diacylglucosamine hydrolase 1369254 4213469 ABO_1204 Alcanivorax borkumensis SK2 UDP-2,3-diacylglucosamine hydrolase YP_692924.1 1368523 R 393595 CDS YP_692925.1 110834066 4212271 complement(1369257..1369877) 1 NC_008260.1 (ppiB) (peptidyl-prolyl cis-trans isomerase A,precursor) identified by match to PFAM protein family HMMPF00160 InterPro: Cyclophilin-type peptidyl-prolyl cis-trans isomerase; High confidence in function and specificity; peptidyl-prolyl isomerase 1369877 ppiA 4212271 ppiA Alcanivorax borkumensis SK2 peptidyl-prolyl isomerase YP_692925.1 1369257 R 393595 CDS YP_692926.1 110834067 4212272 complement(1369883..1370380) 1 NC_008260.1 (peptidyl-prolyl cis-trans isomerase B) identified by match to PFAM protein family HMMPF00160 InterPro: Cyclophilin-type peptidyl-prolyl cis-trans isomerase; High confidence in function and specificity; peptidyl-prolyl isomerase 1370380 ppiB 4212272 ppiB Alcanivorax borkumensis SK2 peptidyl-prolyl isomerase YP_692926.1 1369883 R 393595 CDS YP_692927.1 110834068 4211188 1370536..1372221 1 NC_008260.1 catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1372221 glnS 4211188 glnS Alcanivorax borkumensis SK2 glutaminyl-tRNA synthetase YP_692927.1 1370536 D 393595 CDS YP_692928.1 110834069 4211476 complement(1372405..1373412) 1 NC_008260.1 (5, 10-methylenetetrahydromethanopterin cyclohydrolase) identified by match to PFAM protein family HMMPF00763 InterPro: Tetrahydrofolate dehydrogenase/cyclohydrolase; High confidence in function and specificity; 5,10-methenyltetrahydromethanopterin cyclohydrolase 1373412 hmd 4211476 hmd Alcanivorax borkumensis SK2 5,10-methenyltetrahydromethanopterin cyclohydrolase YP_692928.1 1372405 R 393595 CDS YP_692929.1 110834070 4211943 1373956..1375269 1 NC_008260.1 (trigger factor) identified by sequence similarity; InterPro: FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase); High confidence in function and specificity; trigger factor protein 1375269 tig 4211943 tig Alcanivorax borkumensis SK2 trigger factor protein YP_692929.1 1373956 D 393595 CDS YP_692930.1 110834071 4212464 1375557..1376213 1 NC_008260.1 identified by sequencesimilarity; InterPro: Clp protease; Hypothetical protein; ATP-dependent Clp protease, proteolytic subunitclpp 1376213 clpP 4212464 clpP Alcanivorax borkumensis SK2 ATP-dependent Clp protease, proteolytic subunitclpp YP_692930.1 1375557 D 393595 CDS YP_692931.1 110834072 4212465 1376330..1377610 1 NC_008260.1 binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1377610 clpX 4212465 clpX Alcanivorax borkumensis SK2 ATP-dependent protease ATP-binding subunit ClpX YP_692931.1 1376330 D 393595 CDS YP_692932.1 110834073 4213470 1377666..1380062 1 NC_008260.1 (lon-2) identified by match to PFAM protein family HMMPF00004 InterPro: ATP-dependent protease La; High confidence in function and specificity; ATP-dependent protease La 1380062 4213470 ABO_1212 Alcanivorax borkumensis SK2 ATP-dependent protease La YP_692932.1 1377666 D 393595 CDS YP_692933.1 110834074 4213292 1380246..1380518 1 NC_008260.1 DNA-binding protein HU 1 (DNA-binding protein II) (HB); Specificity unclear; DNA-binding protein HU 1380518 dbh1 4213292 dbh1 Alcanivorax borkumensis SK2 DNA-binding protein HU YP_692933.1 1380246 D 393595 CDS YP_692934.1 110834075 4212273 1380723..1382654 1 NC_008260.1 peptidyl-prolyl isomerase identified by sequence similarity; InterPro: PpiC-type peptidyl-prolyl cis-trans isomerase; High confidence in function and specificity; peptidyl-prolyl isomerase 1382654 ppiD 4212273 ppiD Alcanivorax borkumensis SK2 peptidyl-prolyl isomerase YP_692934.1 1380723 D 393595 CDS YP_692935.1 110834076 4213038 complement(1382736..1383539) 1 NC_008260.1 identified by sequence similarity; InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity; enoyl-ACP reductase 1383539 fabI 4213038 fabI Alcanivorax borkumensis SK2 enoyl-ACP reductase YP_692935.1 1382736 R 393595 CDS YP_692936.1 110834077 4211631 complement(1383777..1385378) 1 NC_008260.1 (oligopeptide ABC transporter, ATP-binding protein) identified ba sequence similarity and by match to PFAM protein family HMMPF00005; InterPro: AAA ATPase superfamily; High confidence in function and specificity; oligopeptide ABC transporter ATP-binding protein 1385378 oppF 4211631 oppF Alcanivorax borkumensis SK2 oligopeptide ABC transporter ATP-binding protein YP_692936.1 1383777 R 393595 CDS YP_692937.1 110834078 4211630 complement(1385375..1386418) 1 NC_008260.1 (oligopeptide ABC transporter, permease protein) identified by sequence similarity and by match to PFAM protein family HMMPF00528; InterPro: Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity; oligopeptide ABC transporter permease 1386418 oppC 4211630 oppC Alcanivorax borkumensis SK2 oligopeptide ABC transporter permease YP_692937.1 1385375 R 393595 CDS YP_692938.1 110834079 4211629 complement(1386418..1387497) 1 NC_008260.1 (oligopeptide ABC transporter, permease protein) identified by sequence similarity and by match to PFAM protein family HMMPF00528; InterPro: Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity; oligopeptide ABC transporter permease 1387497 oppB 4211629 oppB Alcanivorax borkumensis SK2 oligopeptide ABC transporter permease YP_692938.1 1386418 R 393595 CDS YP_692939.1 110834080 4211512 complement(1387494..1389296) 1 NC_008260.1 (oligopeptide ABC transporter periplasmic peptide-binding protein ) identified by sequence similarity and by match to PFAM protein family HMMPF00496; InterPro: Bacterial extracellular solute-binding protein family 5; Function unclear; oligopeptide ABC transporter periplasmic peptide-binding protein 1389296 4211512 ABO_1219 Alcanivorax borkumensis SK2 oligopeptide ABC transporter periplasmic peptide-binding protein YP_692939.1 1387494 R 393595 CDS YP_692940.1 110834081 4211513 complement(1389309..1391141) 1 NC_008260.1 (oligopeptide ABC transporter periplasmic peptide-binding protein ) identified by sequence similarity and by match to PFAM protein family HMMPF00496; InterPro: Bacterial extracellular solute-binding protein family 5; Function unclear; oligopeptide ABC transporter periplasmic peptide-binding protein 1391141 4211513 ABO_1220 Alcanivorax borkumensis SK2 oligopeptide ABC transporter periplasmic peptide-binding protein YP_692940.1 1389309 R 393595 CDS YP_692941.1 110834082 4211514 complement(1391119..1392738) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01464 InterPro: SLT domain; High confidence in function and specificity; membrane-bound lytic murein transglycosylase D 1392738 4211514 ABO_1221 Alcanivorax borkumensis SK2 membrane-bound lytic murein transglycosylase D YP_692941.1 1391119 R 393595 CDS YP_692942.1 110834083 4212140 complement(1392807..1393580) 1 NC_008260.1 (Metallo-beta-lactamase family protein, including beta-lactamase, hiolesterases, members of the glyoxalase II family, ) identified by sequence similarity; InterPro: Metallo-beta-lactamase superfamily; Family membership; metallo-beta-lactamase family protein 1393580 bla 4212140 bla Alcanivorax borkumensis SK2 metallo-beta-lactamase family protein YP_692942.1 1392807 R 393595 CDS YP_692943.1 110834084 4211515 1393676..1394452 1 NC_008260.1 conserved hypothetical protein identified by sequencesimilarity; hypothetical protein 1394452 4211515 ABO_1223 Alcanivorax borkumensis SK2 hypothetical protein YP_692943.1 1393676 D 393595 CDS YP_692944.1 110834085 4212166 1394457..1394912 1 NC_008260.1 (ribonuclease HI) identified by sequence similarity; InterPro: RNase H; High confidence in function and specificity; ribonuclease H 1394912 rnhA 4212166 rnhA Alcanivorax borkumensis SK2 ribonuclease H YP_692944.1 1394457 D 393595 CDS YP_692945.1 110834086 4211402 1394912..1395655 1 NC_008260.1 identified by sequence similarity; InterPro: Exonuclease; High confidence in function and specificity; DNA polymerase III subunit epsilon 1395655 dnaQ 4211402 dnaQ Alcanivorax borkumensis SK2 DNA polymerase III subunit epsilon YP_692945.1 1394912 D 393595 CDS YP_692946.1 110834087 4211429 complement(1395751..1397343) 1 NC_008260.1 involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter 1397343 nhaB 4211429 nhaB Alcanivorax borkumensis SK2 sodium/proton antiporter YP_692946.1 1395751 R 393595 CDS YP_692947.1 110834088 4211516 1397738..1399417 1 NC_008260.1 hypothetical protein 1399417 4211516 ABO_1227 Alcanivorax borkumensis SK2 hypothetical protein YP_692947.1 1397738 D 393595 CDS YP_692948.1 110834089 4211517 1399410..1400240 1 NC_008260.1 identified by sequence similarity; InterPro: NUDIX hydrolase; Specificity unclear; NADH pyrophosphatase 1400240 4211517 ABO_1228 Alcanivorax borkumensis SK2 NADH pyrophosphatase YP_692948.1 1399410 D 393595 CDS YP_692949.1 110834090 4211518 1400253..1400900 1 NC_008260.1 hypothetical protein 1400900 4211518 ABO_1229 Alcanivorax borkumensis SK2 hypothetical protein YP_692949.1 1400253 D 393595 CDS YP_692950.1 110834091 4213639 1401049..1402101 1 NC_008260.1 SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease 1402101 sohB 4213639 sohB Alcanivorax borkumensis SK2 periplasmic protease YP_692950.1 1401049 D 393595 CDS YP_692951.1 110834092 4211283 1402134..1403126 1 NC_008260.1 (alcohol dehydrogenase, ) identified by sequencesimilarity; InterPro: Zinc-containing alcohol dehydrogenase superfamily; Family membership; alcohol dehydrogenase 1403126 adhA 4211283 adhA Alcanivorax borkumensis SK2 alcohol dehydrogenase YP_692951.1 1402134 D 393595 CDS YP_692952.1 110834093 4211571 1403539..1404465 1 NC_008260.1 identified by sequence similarity; Family membership; 2-hydroxy-3-oxopropionate reductase 1404465 yhaE 4211571 yhaE Alcanivorax borkumensis SK2 2-hydroxy-3-oxopropionate reductase YP_692952.1 1403539 D 393595 CDS YP_692953.1 110834094 4211340 1404465..1405253 1 NC_008260.1 identified by sequencesimilarity; High confidence in function and specificity; hydroxypyruvate isomerase 1405253 hyi 4211340 hyi Alcanivorax borkumensis SK2 hydroxypyruvate isomerase YP_692953.1 1404465 D 393595 CDS YP_692954.1 110834095 4212220 1405250..1406092 1 NC_008260.1 identified by sequence similarity; InterPro: DnaJ N-terminal domain; Specificity unclear; dnaJ-like protein DjlA 1406092 djlA 4212220 djlA Alcanivorax borkumensis SK2 dnaJ-like protein DjlA YP_692954.1 1405250 D 393595 CDS YP_692955.1 110834096 4211519 1406379..1406612 1 NC_008260.1 hypothetical protein 1406612 4211519 ABO_1235 Alcanivorax borkumensis SK2 hypothetical protein YP_692955.1 1406379 D 393595 CDS YP_692956.1 110834097 4211280 complement(1406948..1408888) 1 NC_008260.1 AcsA; in Sinorhizobium meliloti this enzyme is required for acetoacetate activation; similar to acetyl-CoA synthase; acetoacetyl-CoA synthetase 1408888 acsA 4211280 acsA Alcanivorax borkumensis SK2 acetoacetyl-CoA synthetase YP_692956.1 1406948 R 393595 CDS YP_692957.1 110834098 4211800 complement(1408885..1410894) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00514 InterPro: Carbamoyl-phosphate synthase; High confidence in function and specificity; acetyl-CoA carboxylase, biotin carboxylase 1410894 fabG 4211800 fabG Alcanivorax borkumensis SK2 acetyl-CoA carboxylase, biotin carboxylase YP_692957.1 1408885 R 393595 CDS YP_692958.1 110834099 4211520 complement(1411106..1411879) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00378, InterPro: Enoyl-CoA hydratase/isomerase; High confidence in function and specificity; enoyl-CoA hydratase 1411879 4211520 ABO_1238 Alcanivorax borkumensis SK2 enoyl-CoA hydratase YP_692958.1 1411106 R 393595 CDS YP_692959.1 110834100 4211521 complement(1411934..1413541) 1 NC_008260.1 (Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), ) identified by sequencesimilarity; InterPro: Carboxyl transferase family; High confidence in function and specificity; acetyl-CoA carboxylase carboxyltransferase 1413541 4211521 ABO_1239 Alcanivorax borkumensis SK2 acetyl-CoA carboxylase carboxyltransferase YP_692959.1 1411934 R 393595 CDS YP_692960.1 110834101 4211212 complement(1413610..1414773) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Acyl-CoA dehydrogenase; High confidence in function and specificity; isovaleryl-CoA dehydrogenase 1414773 ivd 4211212 ivd Alcanivorax borkumensis SK2 isovaleryl-CoA dehydrogenase YP_692960.1 1413610 R 393595 CDS YP_692961.1 110834102 4211522 complement(1414766..1415164) 1 NC_008260.1 transcriptional regulator, InterPro: Bacterial regulatory proteins MerR family; Hypothetical protein; transcriptional regulator 1415164 4211522 ABO_1241 Alcanivorax borkumensis SK2 transcriptional regulator YP_692961.1 1414766 R 393595 CDS YP_692962.1 110834103 4211523 1415267..1417588 1 NC_008260.1 (membrane protein, ) identified by sequence similarity; InterPro: HMGCR/Patched 5TM box; Function unclear; hypothetical protein 1417588 4211523 ABO_1242 Alcanivorax borkumensis SK2 hypothetical protein YP_692962.1 1415267 D 393595 CDS YP_692963.1 110834104 4211524 1417726..1419870 1 NC_008260.1 sensor histidine kinase containing HisKA, HATPase_c and Response_reg domains, identified by match to PFAM protein family HMMPF04171 InterPro: Histidine kinase C-terminal; Conserved hypothetical protein; sensor histidine kinase 1419870 4211524 ABO_1243 Alcanivorax borkumensis SK2 sensor histidine kinase YP_692963.1 1417726 D 393595 CDS YP_692964.1 110834105 4211525 1419867..1420559 1 NC_008260.1 identified by match to PFAM protein family HMMPF01118; hypothetical protein 1420559 4211525 ABO_1244 Alcanivorax borkumensis SK2 hypothetical protein YP_692964.1 1419867 D 393595 CDS YP_692965.1 110834106 4211499 1420603..1421085 1 NC_008260.1 regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 1421085 menG 4211499 menG Alcanivorax borkumensis SK2 ribonuclease activity regulator protein RraA YP_692965.1 1420603 D 393595 CDS YP_692966.1 110834107 4211526 1421179..1421589 1 NC_008260.1 (CBS domain protein, ) identified by sequence similarity; InterPro: CBS domain; Function unclear; hypothetical protein 1421589 4211526 ABO_1246 Alcanivorax borkumensis SK2 hypothetical protein YP_692966.1 1421179 D 393595 CDS YP_692967.1 110834108 4211527 1421640..1422218 1 NC_008260.1 (ftsK) identified by sequence similarity; Hypothetical protein; DNA translocase FtsK 1422218 4211527 ABO_1247 Alcanivorax borkumensis SK2 DNA translocase FtsK YP_692967.1 1421640 D 393595 CDS YP_692968.1 110834109 4211498 complement(1422348..1423334) 1 NC_008260.1 catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase 1423334 mdh 4211498 mdh Alcanivorax borkumensis SK2 malate dehydrogenase YP_692968.1 1422348 R 393595 CDS YP_692969.1 110834110 4211528 1423472..1424560 1 NC_008260.1 Hypothetical protein; hypothetical protein 1424560 4211528 ABO_1249 Alcanivorax borkumensis SK2 hypothetical protein YP_692969.1 1423472 D 393595 CDS YP_692970.1 110834111 4211529 complement(1424542..1425606) 1 NC_008260.1 ranscriptional regulator AraC family identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; Family membership; AraC family transcriptional regulator 1425606 4211529 ABO_1250 Alcanivorax borkumensis SK2 AraC family transcriptional regulator YP_692970.1 1424542 R 393595 CDS YP_692971.1 110834112 4213021 1426138..1427655 1 NC_008260.1 InterPro: Carboxylesterases type-B; High confidence in function and specificity; carboxylesterase 1427655 estC 4213021 estC Alcanivorax borkumensis SK2 carboxylesterase YP_692971.1 1426138 D 393595 CDS YP_692972.1 110834113 4212143 1427797..1428156 1 NC_008260.1 identified by sequence similarity; InterPro: BolA-like protein; High confidence in function and specificity; bolA protein 1428156 bolA 4212143 bolA Alcanivorax borkumensis SK2 bolA protein YP_692972.1 1427797 D 393595 CDS YP_692973.1 110834114 4211530 1428153..1429106 1 NC_008260.1 (conserved hypothetical protein containing rhodanese-like domain) identified by match to PFAM protein family HMMPF00581 InterPro: Rhodanese/cdc25 fold; hypothetical protein 1429106 4211530 ABO_1253 Alcanivorax borkumensis SK2 hypothetical protein YP_692973.1 1428153 D 393595 CDS YP_692974.1 110834115 4211359 1429188..1429916 1 NC_008260.1 (molybdate ABC transporter periplasmic molybdate-binding protein) identified by match to TIGR protein family HMMTIGR01256; Family membership; molybdate ABC transporter periplasmic binding protein 1429916 modA 4211359 modA Alcanivorax borkumensis SK2 molybdate ABC transporter periplasmic binding protein YP_692974.1 1429188 D 393595 CDS YP_692975.1 110834116 4211360 1429903..1430592 1 NC_008260.1 identified by sequence similarity; InterPro: Binding-protein-dependent transport systems inner membrane component; Family membership; molybdate ABC transporter permease 1430592 modB 4211360 modB Alcanivorax borkumensis SK2 molybdate ABC transporter permease YP_692975.1 1429903 D 393595 CDS YP_692976.1 110834117 4211361 1430589..1431665 1 NC_008260.1 identified by sequencesimilarity; InterPro: AAA ATPase superfamily; Family membership; molybdate ABC transporter ATP-binding protein 1431665 modC 4211361 modC Alcanivorax borkumensis SK2 molybdate ABC transporter ATP-binding protein YP_692976.1 1430589 D 393595 CDS YP_692977.1 110834118 4213412 complement(1431643..1432791) 1 NC_008260.1 hypothetical protein 1432791 4213412 ABO_1257 Alcanivorax borkumensis SK2 hypothetical protein YP_692977.1 1431643 R 393595 CDS YP_692978.1 110834119 4213413 complement(1432966..1433223) 1 NC_008260.1 hypothetical protein 1433223 4213413 ABO_1258 Alcanivorax borkumensis SK2 hypothetical protein YP_692978.1 1432966 R 393595 CDS YP_692979.1 110834120 4213414 1433447..1435015 1 NC_008260.1 identified by sequence similarity; InterPro: Cholesterol oxidase (CHOD); Function unclear; cholesterol oxidase 1435015 4213414 ABO_1259 Alcanivorax borkumensis SK2 cholesterol oxidase YP_692979.1 1433447 D 393595 CDS YP_692980.1 110834121 4213415 1435043..1435627 1 NC_008260.1 hypothetical protein 1435627 4213415 ABO_1260 Alcanivorax borkumensis SK2 hypothetical protein YP_692980.1 1435043 D 393595 CDS YP_692981.1 110834122 4213416 complement(1435836..1436420) 1 NC_008260.1 identified by match to PFAM protein family HMMPF03695; hypothetical protein 1436420 4213416 ABO_1261 Alcanivorax borkumensis SK2 hypothetical protein YP_692981.1 1435836 R 393595 CDS YP_692982.1 110834123 4213417 complement(1436517..1437611) 1 NC_008260.1 GGDEF domain protein identified by match to PFAM protein family HMMPF00990 InterPro: Domain of unknown function DUF9; Function unclear; diguanylate cyclase 1437611 4213417 ABO_1262 Alcanivorax borkumensis SK2 diguanylate cyclase YP_692982.1 1436517 R 393595 CDS YP_692983.1 110834124 4213418 1437758..1438852 1 NC_008260.1 oxidoreductase (acting on the CH-CH group) identified by sequencesimilarity; InterPro: Acyl-CoA dehydrogenase; Family membership; oxidoreductase 1438852 4213418 ABO_1263 Alcanivorax borkumensis SK2 oxidoreductase YP_692983.1 1437758 D 393595 CDS YP_692984.1 110834125 4213419 1438862..1440058 1 NC_008260.1 (acdA) identified by sequencesimilarity; InterPro: Acyl-CoA dehydrogenase; Specificity unclear; acyl-CoA dehydrogenase 1440058 4213419 ABO_1264 Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_692984.1 1438862 D 393595 CDS YP_692985.1 110834126 4213420 1440171..1440968 1 NC_008260.1 oxidoreductase (acting on the CH-OH group of donors) InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; oxidoreductase 1440968 4213420 ABO_1265 Alcanivorax borkumensis SK2 oxidoreductase YP_692985.1 1440171 D 393595 CDS YP_692986.1 110834127 4211790 1440968..1441822 1 NC_008260.1 identified by sequencesimilarity; InterPro: Uncharacterized protein family UPF0021; hypothetical protein 1441822 ydaO 4211790 ydaO Alcanivorax borkumensis SK2 hypothetical protein YP_692986.1 1440968 D 393595 CDS YP_692987.1 110834128 4211179 1442053..1444212 1 NC_008260.1 catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 1444212 glcB 4211179 glcB Alcanivorax borkumensis SK2 malate synthase G YP_692987.1 1442053 D 393595 CDS YP_692988.1 110834130 4213421 complement(1444373..1445137) 1 NC_008260.1 hypothetical protein 1445137 4213421 ABO_1268 Alcanivorax borkumensis SK2 hypothetical protein YP_692988.1 1444373 R 393595 CDS YP_692989.1 110834129 4213422 1445060..1445980 1 NC_008260.1 identified by match to PFAM protein family HMMPF02390 InterPro: SAM (and some other nucleotide) binding motif; Hypothetical protein; methyltransferase 1445980 4213422 ABO_1269 Alcanivorax borkumensis SK2 methyltransferase YP_692989.1 1445060 D 393595 CDS YP_692990.1 110834131 4213423 complement(1446087..1446584) 1 NC_008260.1 hypothetical protein 1446584 4213423 ABO_1270 Alcanivorax borkumensis SK2 hypothetical protein YP_692990.1 1446087 R 393595 CDS YP_692991.1 110834132 4213424 complement(1446588..1447061) 1 NC_008260.1 acetyltransferase (transferring groups other than amino-acyl groups) identified by match to PFAM protein family HMMPF00583 InterPro: GCN5-related N-acetyltransferase; Family membership; acetyltransferase 1447061 4213424 ABO_1271 Alcanivorax borkumensis SK2 acetyltransferase YP_692991.1 1446588 R 393595 CDS YP_692992.1 110834133 4213425 complement(1447024..1448157) 1 NC_008260.1 hypothetical protein 1448157 4213425 ABO_1272 Alcanivorax borkumensis SK2 hypothetical protein YP_692992.1 1447024 R 393595 CDS YP_692993.1 110834134 4211141 complement(1448157..1449527) 1 NC_008260.1 Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1449527 purB 4211141 purB Alcanivorax borkumensis SK2 adenylosuccinate lyase YP_692993.1 1448157 R 393595 CDS YP_692994.1 110834135 4213426 complement(1449663..1450304) 1 NC_008260.1 HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 1450304 4213426 ABO_1274 Alcanivorax borkumensis SK2 hypothetical protein YP_692994.1 1449663 R 393595 CDS YP_692995.1 110834136 4211927 complement(1450301..1451395) 1 NC_008260.1 (tRNA(5-methylaminomethyl-2-thiouridylate)-methyltr ansferase) identified by sequencesimilarity; InterPro: tRNA methyl transferase tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase catalyses the addition of 5-methylaminomethyl-2-thiouridylate to tRNAs using S-adenosyl-L-methionine as a substrate and releasing S-adenosyl-L-homocysteine. The enzyme is cytoplasmic and is involved in tRNA processing.; High confidence in function and specificity; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 1451395 trmU 4211927 trmU Alcanivorax borkumensis SK2 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_692995.1 1450301 R 393595 CDS YP_692996.1 110834137 4213427 complement(1451402..1451869) 1 NC_008260.1 Region start changed from 1451926 to 1451869 (-57 bases); MutT/NUDIX family protein 1451869 4213427 ABO_1276 Alcanivorax borkumensis SK2 MutT/NUDIX family protein YP_692996.1 1451402 R 393595 CDS YP_692997.1 110834138 4211355 1451996..1452478 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00581 InterPro: MoaC family; High confidence in function and specificity; molybdenum cofactor biosynthesis protein C 1452478 moaC 4211355 moaC Alcanivorax borkumensis SK2 molybdenum cofactor biosynthesis protein C YP_692997.1 1451996 D 393595 CDS YP_692998.1 110834139 4211356 1452480..1452734 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; molybdenum cofactor biosynthesis protein D 1452734 moaD 4211356 moaD Alcanivorax borkumensis SK2 molybdenum cofactor biosynthesis protein D YP_692998.1 1452480 D 393595 CDS YP_692999.1 110834140 4211357 1452743..1453177 1 NC_008260.1 identified by sequencesimilarity; InterPro: Molydopterin converting factor subunit 2; High confidence in function and specificity; molybdenum cofactor biosynthesis protein E 1453177 moaE 4211357 moaE Alcanivorax borkumensis SK2 molybdenum cofactor biosynthesis protein E YP_692999.1 1452743 D 393595 CDS YP_693000.1 110834141 4213428 complement(1453110..1453730) 1 NC_008260.1 (RNA pseudouridylate synthase, pseudouridine synthase; Ribosomal large subunit pseudouridine synthase E). Similar to PA3968 - Pseudomonas aeruginosa (strain PAO1) Pfam: PseudoU_synth_2; RNA pseudouridylate synthase; Family membership; pseudouridylate synthase 1453730 4213428 ABO_1280 Alcanivorax borkumensis SK2 pseudouridylate synthase YP_693000.1 1453110 R 393595 CDS YP_693001.1 110834142 4211344 1453952..1456174 1 NC_008260.1 (isocitrate dehydrogenase NADP-dependent monomeric-type) identified by match to PFAM protein family HMMPF03971 InterPro: Isocitrate dehydrogenase NADP-dependent monomeric type; High confidence in function and specificity; isocitrate dehydrogenase 1456174 icd 4211344 icd Alcanivorax borkumensis SK2 isocitrate dehydrogenase YP_693001.1 1453952 D 393595 CDS YP_693002.1 110834143 4211345 1456565..1457827 1 NC_008260.1 (icd) (isocitrate dehydrogenase NADP-dependentprokaryotic-type) identified by match to TIGR protein family HMMTIGR00183 InterPro: Isocitrate dehydrogenase NADP-dependent prok type; High confidence in function and specificity; isocitrate dehydrogenase 1457827 icdA 4211345 icdA Alcanivorax borkumensis SK2 isocitrate dehydrogenase YP_693002.1 1456565 D 393595 CDS YP_693003.1 110834144 4213429 complement(1457875..1458129) 1 NC_008260.1 Region start changed from 1458024 to 1458129 (105 bases); cold-shock domain-contain protein 1458129 4213429 ABO_1283 Alcanivorax borkumensis SK2 cold-shock domain-contain protein YP_693003.1 1457875 R 393595 CDS YP_693004.1 110834145 4213430 1458367..1458741 1 NC_008260.1 identified by match to PFAM protein family HMMPF02617; hypothetical protein 1458741 4213430 ABO_1284 Alcanivorax borkumensis SK2 hypothetical protein YP_693004.1 1458367 D 393595 CDS YP_693005.1 110834146 4212462 1458777..1461044 1 NC_008260.1 identified by sequencesimilarity; InterPro: AAA-protein (ATPases associated with various cellular activities); High confidence in function and specificity; ATP-dependent Clp protease, ATP-binding subunitclpa 1461044 clpA 4212462 clpA Alcanivorax borkumensis SK2 ATP-dependent Clp protease, ATP-binding subunitclpa YP_693005.1 1458777 D 393595 CDS YP_693006.1 110834147 4211201 complement(1461172..1461390) 1 NC_008260.1 identified by sequencesimilarity; InterPro: S1 RNA binding domain; High confidence in function and specificity; translation initiation factor IF-1 1461390 infA 4211201 infA Alcanivorax borkumensis SK2 translation initiation factor IF-1 YP_693006.1 1461172 R 393595 CDS YP_693007.1 110834148 4213431 complement(1461491..1462219) 1 NC_008260.1 Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase 1462219 4213431 ABO_1287 Alcanivorax borkumensis SK2 arginyl-tRNA-protein transferase YP_693007.1 1461491 R 393595 CDS YP_693008.1 110834149 4211990 complement(1462249..1462977) 1 NC_008260.1 leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 1462977 aat 4211990 aat Alcanivorax borkumensis SK2 leucyl/phenylalanyl-tRNA--protein transferase YP_693008.1 1462249 R 393595 CDS YP_693009.1 110834150 4211828 complement(1463001..1463948) 1 NC_008260.1 (thioredoxin reductase; NADP-thioredoxin reductase) identified by sequencesimilarity; InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; High confidence in function and specificity; thioredoxin-disulfide reductase 1463948 trxB 4211828 trxB Alcanivorax borkumensis SK2 thioredoxin-disulfide reductase YP_693009.1 1463001 R 393595 CDS YP_693010.1 110834151 4211556 1464301..1466619 1 NC_008260.1 identified by sequence similarity; InterPro: FtsK/SpoIIIE family This domain contains a ATP binding P-loop motif. It is found in the FtsK cell division protein from E. coli FTSK_ECOLI and the stage III sporulation protein E SpoIIIE; Family membership; DNA translocase FtsK 1466619 ftsK 4211556 ftsK Alcanivorax borkumensis SK2 DNA translocase FtsK YP_693010.1 1464301 D 393595 CDS YP_693011.1 110834152 4211456 1466628..1467257 1 NC_008260.1 identified by sequencesimilarity; InterPro: Outer membrane lipoprotein carrier protein LolA; High confidence in function and specificity; outer membrane lipoprotein carrier protein 1467257 lolA 4211456 lolA Alcanivorax borkumensis SK2 outer membrane lipoprotein carrier protein YP_693011.1 1466628 D 393595 CDS YP_693012.1 110834153 4211991 1467315..1468646 1 NC_008260.1 (ATPase AAA family) identified by sequencesimilarity; InterPro: AAA-protein (ATPases associated with various cellular activities); Conserved hypothetical protein; recombination factor protein RarA 1468646 4211991 ABO_1292 Alcanivorax borkumensis SK2 recombination factor protein RarA YP_693012.1 1467315 D 393595 CDS YP_693013.1 110834154 4212358 1468646..1469053 1 NC_008260.1 identified by sequencesimilarity; InterPro: CRCB protein; Family membership; crcB protein 1469053 crcB 4212358 crcB Alcanivorax borkumensis SK2 crcB protein YP_693013.1 1468646 D 393595 CDS YP_693014.1 110834155 4213632 1469117..1470406 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00414 InterPro: Seryl-tRNA synthetase; High confidence in function and specificity; seryl-tRNA synthetase 1470406 serS 4213632 serS Alcanivorax borkumensis SK2 seryl-tRNA synthetase YP_693014.1 1469117 D 393595 CDS YP_693015.1 110834156 4212573 1470527..1471912 1 NC_008260.1 identified by sequencesimilarity; InterPro: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; High confidence in function and specificity; uroporphyrin-III C-methyltransferase 1471912 cysG 4212573 cysG Alcanivorax borkumensis SK2 uroporphyrin-III C-methyltransferase YP_693015.1 1470527 D 393595 CDS YP_693016.1 110834157 4211992 complement(1472033..1473022) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF02885; InterPro: Glycosyl transferase family; Family membership; hypothetical protein 1473022 4211992 ABO_1296 Alcanivorax borkumensis SK2 hypothetical protein YP_693016.1 1472033 R 393595 CDS YP_693017.1 110834158 4211993 complement(1473084..1473338) 1 NC_008260.1 hypothetical protein 1473338 4211993 ABO_1297 Alcanivorax borkumensis SK2 hypothetical protein YP_693017.1 1473084 R 393595 CDS YP_693018.1 110834159 4211994 complement(1473339..1473566) 1 NC_008260.1 hypothetical protein 1473566 4211994 ABO_1298 Alcanivorax borkumensis SK2 hypothetical protein YP_693018.1 1473339 R 393595 CDS YP_693019.1 110834160 4211995 complement(1473631..1474005) 1 NC_008260.1 DsrE, Uncharacterized conserved protein involved in intracellular sulfur reduction, identified by sequences imilarity InterPro: DsrE-like protein; Family membership; DsrE/DsrF-like family protein 1474005 4211995 ABO_1299 Alcanivorax borkumensis SK2 DsrE/DsrF-like family protein YP_693019.1 1473631 R 393595 CDS YP_693020.1 110834161 4211996 complement(1474005..1474688) 1 NC_008260.1 identified by match to PFAM protein family HMMPF04178 InterPro: Uncharacterized protein family UPF0005; hypothetical protein 1474688 4211996 ABO_1300 Alcanivorax borkumensis SK2 hypothetical protein YP_693020.1 1474005 R 393595 CDS YP_693021.1 110834162 4213830 complement(1475141..1476187) 1 NC_008260.1 arsenical pump-driving ATPase (Arsenite-translocating ATPase) (Arsenical resistance ATPase) (Arsenite-transporting ATPase) InterPro: Anion-transporting ATPase; Specificity unclear; arsenical pump-driving ATPase 1476187 arsA 4213830 arsA Alcanivorax borkumensis SK2 arsenical pump-driving ATPase YP_693021.1 1475141 R 393595 CDS YP_693022.1 110834163 4211997 complement(1476178..1476444) 1 NC_008260.1 hypothetical protein 1476444 4211997 ABO_1302 Alcanivorax borkumensis SK2 hypothetical protein YP_693022.1 1476178 R 393595 CDS YP_693023.1 110834164 4213653 complement(1476444..1478150) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Carbon starvation protein CstA; High confidence in function and specificity; carbon starvation protein CstA 1478150 cstA 4213653 cstA Alcanivorax borkumensis SK2 carbon starvation protein CstA YP_693023.1 1476444 R 393595 CDS YP_693024.1 110834165 4211567 1478399..1479052 1 NC_008260.1 identified by sequence similarity; InterPro: Response regulator receiver domain; Specificity unclear; DNA-binding response regulator GacA 1479052 gacA 4211567 gacA Alcanivorax borkumensis SK2 DNA-binding response regulator GacA YP_693024.1 1478399 D 393595 CDS YP_693025.1 110834166 4211955 1479132..1480955 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00194; High confidence in function and specificity; excinuclease ABC subunit C 1480955 uvrC 4211955 uvrC Alcanivorax borkumensis SK2 excinuclease ABC subunit C YP_693025.1 1479132 D 393595 CDS YP_693026.1 110834167 4211330 1481051..1481656 1 NC_008260.1 (CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase) identified by sequencesimilarity; InterPro: CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase; High confidence in function and specificity; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1481656 pgsA 4211330 pgsA Alcanivorax borkumensis SK2 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase YP_693026.1 1481051 D 393595 CDS YP_693027.1 110834168 4211998 1482446..1486114 1 NC_008260.1 sensor histidine kinase/respose regulator, contains HisKA, HATPase_c and two Response_reg receiver domains; identified by sequencesimilarity; InterPro: Histidine kinase C-terminal; Family membership; sensor histidine kinase/respose regulator 1486114 4211998 ABO_1307 Alcanivorax borkumensis SK2 sensor histidine kinase/respose regulator YP_693027.1 1482446 D 393595 CDS YP_693028.1 110834169 4212455 1486174..1487037 1 NC_008260.1 (chemotaxis protein methyltransferase CheR-like) identified by sequence similarity; InterPro: CheR-type MCP methyl-transferase; High confidence in function and specificity; chemotaxis protein methyltransferase 1487037 cheR 4212455 cheR Alcanivorax borkumensis SK2 chemotaxis protein methyltransferase YP_693028.1 1486174 D 393595 CDS YP_693029.1 110834170 4211999 1487051..1487527 1 NC_008260.1 identified by sequencesimilarity; InterPro: Response regulator receiver domain; High confidence in function and specificity; sensory box protein/response regulator 1487527 4211999 ABO_1309 Alcanivorax borkumensis SK2 sensory box protein/response regulator YP_693029.1 1487051 D 393595 CDS YP_693030.1 110834171 4212979 1487530..1488111 1 NC_008260.1 identified by sequencesimilarity; InterPro: CheB methylesterase; High confidence in function and specificity; protein-glutamate methylesterase 1488111 cheB 4212979 cheB Alcanivorax borkumensis SK2 protein-glutamate methylesterase YP_693030.1 1487530 D 393595 CDS YP_693031.1 110834172 4212000 1488119..1489255 1 NC_008260.1 sensory box protein/response regulator identified by sequencesimilarity; Function unclear; sensory box protein/response regulator 1489255 4212000 ABO_1311 Alcanivorax borkumensis SK2 sensory box protein/response regulator YP_693031.1 1488119 D 393595 CDS YP_693032.1 110834173 4212649 1489259..1490761 1 NC_008260.1 Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP E family,identified by sequence similarity. InterPro: Bacterial type II secretion system protein E; Family membership; general secretion pathway protein E 1490761 gspE 4212649 gspE Alcanivorax borkumensis SK2 general secretion pathway protein E YP_693032.1 1489259 D 393595 CDS YP_693033.1 110834174 4212650 1490778..1491995 1 NC_008260.1 Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP F family,identified by sequence similarity. InterPro: Bacterial type II secretion system protein; Family membership; general secretion pathway protein F 1491995 gspF 4212650 gspF Alcanivorax borkumensis SK2 general secretion pathway protein F YP_693033.1 1490778 D 393595 CDS YP_693034.1 110834175 4212651 1492005..1492430 1 NC_008260.1 Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of a variety of enzymes across the outer membrane.Belongs to the GSP G family.; Family membership; general secretion pathway protein GspG 1492430 gspG 4212651 gspG Alcanivorax borkumensis SK2 general secretion pathway protein GspG YP_693034.1 1492005 D 393595 CDS YP_693035.1 110834176 4212652 1492432..1493151 1 NC_008260.1 Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP H family, by sequence similarity.; Family membership; general secretion pathway protein H 1493151 gspH 4212652 gspH Alcanivorax borkumensis SK2 general secretion pathway protein H YP_693035.1 1492432 D 393595 CDS YP_693036.1 110834177 4212653 1493148..1493528 1 NC_008260.1 Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP I family,identified by sequence similarity InterPro: Bacterial type II secretion system protein I/J; Family membership; general secretion pathway protein GspO 1493528 gspI 4212653 gspI Alcanivorax borkumensis SK2 general secretion pathway protein GspO YP_693036.1 1493148 D 393595 CDS YP_693037.1 110834178 4212654 1493525..1494184 1 NC_008260.1 Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP J family,identified by sequence similarity; Family membership; general secretion pathway protein GspJ 1494184 gspJ 4212654 gspJ Alcanivorax borkumensis SK2 general secretion pathway protein GspJ YP_693037.1 1493525 D 393595 CDS YP_693038.1 110834179 4212655 1494235..1495248 1 NC_008260.1 Involved in a general secretion pathway (GSP) for the export of proteins. Required for the translocation of the multiple pectic enzymes. Belongs to the GSP K family,identified by sequence similarity; Family membership; general secretion pathway protein GspK 1495248 gspK 4212655 gspK Alcanivorax borkumensis SK2 general secretion pathway protein GspK YP_693038.1 1494235 D 393595 CDS YP_693039.1 110834180 4212656 1495360..1496499 1 NC_008260.1 Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP L family,identified by sequence similarity.; Family membership; general secretion pathway protein L 1496499 gspL 4212656 gspL Alcanivorax borkumensis SK2 general secretion pathway protein L YP_693039.1 1495360 D 393595 CDS YP_693040.1 110834181 4212657 1496496..1497014 1 NC_008260.1 Involved in a general secretion pathway (GSP) for the export of proteins. Belongs to the GSP M family,identified by sequence similarity.; Family membership; general secretion pathway protein M 1497014 gspM 4212657 gspM Alcanivorax borkumensis SK2 general secretion pathway protein M YP_693040.1 1496496 D 393595 CDS YP_693041.1 110834182 4212001 1497497..1498249 1 NC_008260.1 hypothetical protein 1498249 4212001 ABO_1321 Alcanivorax borkumensis SK2 hypothetical protein YP_693041.1 1497497 D 393595 CDS YP_693042.1 110834183 4212002 1498283..1500316 1 NC_008260.1 conserved hypothetical protein, with pyruvate phosphate dikinase domain, PPDK_N; hypothetical protein 1500316 4212002 ABO_1322 Alcanivorax borkumensis SK2 hypothetical protein YP_693042.1 1498283 D 393595 CDS YP_693043.1 110834184 4212003 1500385..1501176 1 NC_008260.1 Function unclear; hypothetical protein 1501176 4212003 ABO_1323 Alcanivorax borkumensis SK2 hypothetical protein YP_693043.1 1500385 D 393595 CDS YP_693044.1 110834185 4212004 complement(1501248..1504949) 1 NC_008260.1 one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase 1504949 metH 4212004 metH Alcanivorax borkumensis SK2 B12-dependent methionine synthase YP_693044.1 1501248 R 393595 CDS YP_693045.1 110834186 4212005 1505251..1506069 1 NC_008260.1 (conserved hypothetical protein) identified by match to PFAM protein family HMMPF00924 InterPro: Uncharacterized protein family UPF0003; High confidence in function and specificity; small-conductance mechanosensitive channel 1506069 4212005 ABO_1325 Alcanivorax borkumensis SK2 small-conductance mechanosensitive channel YP_693045.1 1505251 D 393595 CDS YP_693046.1 110834187 4212006 1506080..1506865 1 NC_008260.1 (conserved hypothetical protein) identified by sequence similarity; salt-induced outer membrane protein 1506865 4212006 ABO_1326 Alcanivorax borkumensis SK2 salt-induced outer membrane protein YP_693046.1 1506080 D 393595 CDS YP_693047.1 110834188 4212267 complement(1507438..1508823) 1 NC_008260.1 (pyridine nucleotide transhydrogenase betasubunit) identified by sequence similarity; InterPro: NAD(P) transhydrogenase beta subunit; High confidence in function and specificity; pyridine nucleotide transhydrogenase subunit B 1508823 pntB 4212267 pntB Alcanivorax borkumensis SK2 pyridine nucleotide transhydrogenase subunit B YP_693047.1 1507438 R 393595 CDS YP_693048.1 110834189 4212007 complement(1508827..1509102) 1 NC_008260.1 ocidoredutase (acting on NADH or NADPH with NAD+ or NADP+ as acceptor); Family membership; oxidoreductase 1509102 4212007 ABO_1328 Alcanivorax borkumensis SK2 oxidoreductase YP_693048.1 1508827 R 393595 CDS YP_693049.1 110834190 4212266 complement(1509102..1510385) 1 NC_008260.1 (transcriptional regulator LysR family) identified by match to PFAM protein family HMMPF03466 InterPro: Alanine dehydrogenase and pyridine nucleotide transhydrogenase; High confidence in function and specificity; pyridine nucleotide transhydrogenase subunit A 1510385 pntA 4212266 pntA Alcanivorax borkumensis SK2 pyridine nucleotide transhydrogenase subunit A YP_693049.1 1509102 R 393595 CDS YP_693050.1 110834191 4212008 complement(1510567..1511937) 1 NC_008260.1 Region start changed from 1511994 to 1511937 (-57 bases); ABC1/ AarF family protein 1511937 4212008 ABO_1330 Alcanivorax borkumensis SK2 ABC1/ AarF family protein YP_693050.1 1510567 R 393595 CDS YP_693051.1 110834192 4213510 1512085..1512873 1 NC_008260.1 hydrolase alpha/beta fold family identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Family membership; hydrolase 1512873 4213510 ABO_1331 Alcanivorax borkumensis SK2 hydrolase YP_693051.1 1512085 D 393595 CDS YP_693052.1 110834193 4213511 complement(1512983..1515226) 1 NC_008260.1 (tail-specific protease prc) identified by sequence similarity; InterPro: Carboxyl-terminal protease; High confidence in function and specificity; tail-specific protease prc 1515226 4213511 ABO_1332 Alcanivorax borkumensis SK2 tail-specific protease prc YP_693052.1 1512983 R 393595 CDS YP_693053.1 110834194 4213512 1515256..1516479 1 NC_008260.1 Hypothetical protein; hypothetical protein 1516479 4213512 ABO_1333 Alcanivorax borkumensis SK2 hypothetical protein YP_693053.1 1515256 D 393595 CDS YP_693054.1 110834195 4213513 complement(1516498..1517136) 1 NC_008260.1 conserved hypothetical protein with some similarity to AlkB, DNA repair system specific for alkylated DNA; hypothetical protein 1517136 4213513 ABO_1334 Alcanivorax borkumensis SK2 hypothetical protein YP_693054.1 1516498 R 393595 CDS YP_693055.1 110834196 4213514 1517255..1518145 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00383 InterPro: CorA-like Mg2+ transporter protein; Family membership; Mg2+/Co2+ transporter 1518145 4213514 ABO_1335 Alcanivorax borkumensis SK2 Mg2+/Co2+ transporter YP_693055.1 1517255 D 393595 CDS YP_693056.1 110834197 4212141 complement(1518187..1519083) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00753 InterPro: Metallo-beta-lactamase superfamily; Family membership; metallo-beta-lactamase family protein 1519083 blaB 4212141 blaB Alcanivorax borkumensis SK2 metallo-beta-lactamase family protein YP_693056.1 1518187 R 393595 CDS YP_693057.1 110834198 4213515 complement(1519090..1519569) 1 NC_008260.1 hypothetical protein 1519569 4213515 ABO_1337 Alcanivorax borkumensis SK2 hypothetical protein YP_693057.1 1519090 R 393595 CDS YP_693058.1 110834199 4213516 1519644..1520420 1 NC_008260.1 identified by match to PFAM protein family HMMPF03883; hypothetical protein 1520420 4213516 ABO_1338 Alcanivorax borkumensis SK2 hypothetical protein YP_693058.1 1519644 D 393595 CDS YP_693059.1 110834200 4213517 complement(1520472..1520774) 1 NC_008260.1 hypothetical protein 1520774 4213517 ABO_1339 Alcanivorax borkumensis SK2 hypothetical protein YP_693059.1 1520472 R 393595 CDS YP_693060.1 110834201 4211788 complement(1520803..1521720) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Universal stress protein (Usp); Specificity unclear; universal stress protein 1521720 ydaA 4211788 ydaA Alcanivorax borkumensis SK2 universal stress protein YP_693060.1 1520803 R 393595 CDS YP_693061.1 110834202 4213471 complement(1521717..1522469) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Cyclic nucleotide-binding domain; Specificity unclear; transcriptional regulator Anr 1522469 anr 4213471 anr Alcanivorax borkumensis SK2 transcriptional regulator Anr YP_693061.1 1521717 R 393595 CDS YP_693062.1 110834203 4212186 complement(1522508..1523881) 1 NC_008260.1 catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1523881 hemF 4212186 hemF Alcanivorax borkumensis SK2 coproporphyrinogen III oxidase YP_693062.1 1522508 R 393595 CDS YP_693063.1 110834204 4213518 complement(1523958..1524758) 1 NC_008260.1 hypothetical protein 1524758 4213518 ABO_1343 Alcanivorax borkumensis SK2 hypothetical protein YP_693063.1 1523958 R 393595 CDS YP_693064.1 110834205 4212974 complement(1524733..1524984) 1 NC_008260.1 InterPro: Cytochrome oxidase maturation protein cbb3-type; Function unclear; cbb3-type cytochrome oxidase maturation protein 1524984 ccoS 4212974 ccoS Alcanivorax borkumensis SK2 cbb3-type cytochrome oxidase maturation protein YP_693064.1 1524733 R 393595 CDS YP_693065.1 110834206 4213519 complement(1524963..1527329) 1 NC_008260.1 cation-transporting P-type ATPase identified by sequence similarity; InterPro: E1-E2 ATPases; Hypothetical protein; cation-transporting P-type ATPase 1527329 4213519 ABO_1345 Alcanivorax borkumensis SK2 cation-transporting P-type ATPase YP_693065.1 1524963 R 393595 CDS YP_693066.1 110834207 4213520 complement(1527326..1527844) 1 NC_008260.1 hypothetical protein 1527844 4213520 ABO_1346 Alcanivorax borkumensis SK2 hypothetical protein YP_693066.1 1527326 R 393595 CDS YP_693067.1 110834208 4213521 complement(1527813..1529225) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00037 InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain; High confidence in function and specificity; (Fe-S)-binding protein 1529225 4213521 ABO_1347 Alcanivorax borkumensis SK2 (Fe-S)-binding protein YP_693067.1 1527813 R 393595 CDS YP_693068.1 110834209 4213522 complement(1529363..1530280) 1 NC_008260.1 (cytochrome c oxidase cbb3-type subunit III) identified by match to TIGR protein family HMMTIGR00782 InterPro: Cytochrome c oxidase cbb3-type subunit III; High confidence in function and specificity; cbb3-type cytochrome c oxidase subunit III 1530280 4213522 ABO_1348 Alcanivorax borkumensis SK2 cbb3-type cytochrome c oxidase subunit III YP_693068.1 1529363 R 393595 CDS YP_693069.1 110834210 4212973 complement(1530277..1530444) 1 NC_008260.1 (cytochrome c oxidase cbb3-type CcoQ subunit) identified by sequence similarity; Family membership; cbb3-type cytochrome c oxidase subunit CcoQ 1530444 ccoQ 4212973 ccoQ Alcanivorax borkumensis SK2 cbb3-type cytochrome c oxidase subunit CcoQ YP_693069.1 1530277 R 393595 CDS YP_693070.1 110834211 4212972 complement(1530441..1531076) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00781 InterPro: Cytochrome C oxidase mono-heme subunit/FixO; Family membership; cbb3-type cytochrome c oxidase subunit II 1531076 ccoO-1 4212972 ccoO-1 Alcanivorax borkumensis SK2 cbb3-type cytochrome c oxidase subunit II YP_693070.1 1530441 R 393595 CDS YP_693071.1 110834212 4212971 complement(1531087..1532517) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00780 InterPro: Cytochrome c oxidase cbb3-type subunit I; High confidence in function and specificity; cbb3-type cytochrome c oxidase subunit I 1532517 ccoN-1 4212971 ccoN-1 Alcanivorax borkumensis SK2 cbb3-type cytochrome c oxidase subunit I YP_693071.1 1531087 R 393595 CDS YP_693072.1 110834213 4211284 complement(1532861..1533862) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Zinc-containing alcohol dehydrogenase superfamily; Family membership; alcohol dehydrogenase 1533862 adhB 4211284 adhB Alcanivorax borkumensis SK2 alcohol dehydrogenase YP_693072.1 1532861 R 393595 CDS YP_693073.1 110834214 4213523 1533968..1534873 1 NC_008260.1 identified by sequencesimilarity; InterPro: Bacterial regulatory protein LysR family; Family membership; LysR family transcriptional regulator 1534873 4213523 ABO_1353 Alcanivorax borkumensis SK2 LysR family transcriptional regulator YP_693073.1 1533968 D 393595 CDS YP_693074.1 110834215 4211946 1535030..1536232 1 NC_008260.1 (Transposon protein A, transposition regulatory protein tnpA homolog - Sphingomonas aromaticivorans plasmid pNL1, ) InterPro: Phage integrase; High confidence in function and specificity; transposon protein A 1536232 tnpA 4211946 tnpA Alcanivorax borkumensis SK2 transposon protein A YP_693074.1 1535030 D 393595 CDS YP_693075.1 110834216 4211912 1536223..1538337 1 NC_008260.1 (transponson protein B homolog - Sphingomonas aromaticivorans plasmid pNL1) InterPro: Phage integrase; Family membership; transposon protein B 1538337 tnpB 4211912 tnpB Alcanivorax borkumensis SK2 transposon protein B YP_693075.1 1536223 D 393595 CDS YP_693076.1 110834217 4212585 complement(1539268..1542396) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Heavy metal efflux pump CzcA; High confidence in function and specificity; CzcA family heavy metal RND efflux protein 1542396 czcA2 4212585 czcA2 Alcanivorax borkumensis SK2 CzcA family heavy metal RND efflux protein YP_693076.1 1539268 R 393595 CDS YP_693077.1 110834218 4212589 complement(1542393..1544132) 1 NC_008260.1 heavy metal RND efflux membrane fusion protein CzcB family identified by sequence similarity; Family membership; CzcB family heavy metal RND efflux membrane fusion protein 1544132 czcB2 4212589 czcB2 Alcanivorax borkumensis SK2 CzcB family heavy metal RND efflux membrane fusion protein YP_693077.1 1542393 R 393595 CDS YP_693078.1 110834219 4213277 complement(1544122..1545417) 1 NC_008260.1 identified by sequencesimilarity; Family membership; CzcC family heavy metal RND efflux outer membrane protein 1545417 czcC2 4213277 czcC2 Alcanivorax borkumensis SK2 CzcC family heavy metal RND efflux outer membrane protein YP_693078.1 1544122 R 393595 CDS YP_693079.1 110834220 4213524 complement(1545491..1545865) 1 NC_008260.1 hypothetical protein 1545865 4213524 ABO_1359 Alcanivorax borkumensis SK2 hypothetical protein YP_693079.1 1545491 R 393595 CDS YP_693080.1 110834221 4213525 complement(1546667..1548937) 1 NC_008260.1 copper/heavy metal-translocating P-type ATPase) identified by sequencesimilarity; InterPro: Haloacid dehalogenase/epoxide hydrolase family; High confidence in function and specificity; copper-translocating P-type ATPase 1548937 4213525 ABO_1360 Alcanivorax borkumensis SK2 copper-translocating P-type ATPase YP_693080.1 1546667 R 393595 CDS YP_693081.1 110834222 4213526 complement(1549007..1550359) 1 NC_008260.1 identified by match to TIGRFAM protein family HMMTIGR00911; InterPro: Amino acid permease; Family membership; amino acid transporter 1550359 4213526 ABO_1361 Alcanivorax borkumensis SK2 amino acid transporter YP_693081.1 1549007 R 393595 CDS YP_693082.1 110834223 4212350 complement(1550489..1551238) 1 NC_008260.1 (copper resistance protein B); Conserved hypothetical protein; copper resistance protein B 1551238 copB 4212350 copB Alcanivorax borkumensis SK2 copper resistance protein B YP_693082.1 1550489 R 393595 CDS YP_693083.1 110834224 4212348 complement(1551235..1553016) 1 NC_008260.1 (copper resistance protein CopA family) identified by sequencesimilarity; InterPro: Multicopper oxidase type 1; High confidence in function and specificity; copper resistance protein A 1553016 copA 4212348 copA Alcanivorax borkumensis SK2 copper resistance protein A YP_693083.1 1551235 R 393595 CDS YP_693084.1 110834225 4212351 complement(1553105..1553638) 1 NC_008260.1 copper-binding protein plastocyanin/azurin family identified by match to PFAM protein family HMMPF00127; Specificity unclear; copper-binding protein 1553638 copC 4212351 copC Alcanivorax borkumensis SK2 copper-binding protein YP_693084.1 1553105 R 393595 CDS YP_693085.1 110834226 4211609 1553842..1554510 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01387 InterPro: Response regulator receiver domain; Specificity unclear; DNA-binding heavy metal response regulator 1554510 phoP 4211609 phoP Alcanivorax borkumensis SK2 DNA-binding heavy metal response regulator YP_693085.1 1553842 D 393595 CDS YP_693086.1 110834227 4211611 1554530..1555864 1 NC_008260.1 identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Family membership; protein PhoQ 1555864 phoQ 4211611 phoQ Alcanivorax borkumensis SK2 protein PhoQ YP_693086.1 1554530 D 393595 CDS YP_693087.1 110834228 4213527 complement(1556329..1556751) 1 NC_008260.1 transcriptional regulator MerR family identified by match to PFAM protein family HMMPF00376 InterPro: Bacterial regulatory proteins MerR family; Family membership; MerR family transcriptional regulator 1556751 4213527 ABO_1367 Alcanivorax borkumensis SK2 MerR family transcriptional regulator YP_693087.1 1556329 R 393595 CDS YP_693088.1 110834229 4213528 1556832..1557728 1 NC_008260.1 (Cation efflux system permease, ),identified by sequence similarity; InterPro: Heavy-metal-associated domain; High confidence in function and specificity; cation efflux system permease 1557728 4213528 ABO_1368 Alcanivorax borkumensis SK2 cation efflux system permease YP_693088.1 1556832 D 393595 CDS YP_693089.1 110834230 4211468 1557835..1558245 1 NC_008260.1 lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1558245 lspA 4211468 lspA Alcanivorax borkumensis SK2 lipoprotein signal peptidase YP_693089.1 1557835 D 393595 CDS YP_693090.1 110834231 4213529 complement(1558555..1558770) 1 NC_008260.1 (transcriptional regulator, ) identified by match to PFAM protein family HMMPF01381 InterPro: Helix-turn-helix motif; Family membership; transcriptional regulator 1558770 4213529 ABO_1370 Alcanivorax borkumensis SK2 transcriptional regulator YP_693090.1 1558555 R 393595 CDS YP_693091.1 110834232 4211757 1558858..1559220 1 NC_008260.1 conserved hypothetical protein, Predicted metal-binding protein related to the C-terminal domain of SecA;,identified by match to PFAM protein family HMMPF02810 InterPro: SEC-C motif; Family membership; hypothetical protein 1559220 4211757 ABO_1371 Alcanivorax borkumensis SK2 hypothetical protein YP_693091.1 1558858 D 393595 CDS YP_693092.1 110834233 4212458 1559280..1559546 1 NC_008260.1 Family membership; PemI-like protein 1559546 chpR 4212458 chpR Alcanivorax borkumensis SK2 PemI-like protein YP_693092.1 1559280 D 393595 CDS YP_693093.1 110834234 4211758 complement(1560666..1560995) 1 NC_008260.1 InterPro: Uncharacterized protein family UPF0060 Uncharacterized BCR, YnfA/UPF0060 family This entry describes integral membrane proteins of unknown function.; hypothetical protein 1560995 4211758 ABO_1373 Alcanivorax borkumensis SK2 hypothetical protein YP_693093.1 1560666 R 393595 CDS YP_693094.1 110834235 4213280 complement(1561008..1561931) 1 NC_008260.1 (cobalt/cadmium/zinc transporter CDF family),identified by sequencesimilarity; InterPro: Cation efflux family; Family membership; cation efflux family protein 1561931 czcD1 4213280 czcD1 Alcanivorax borkumensis SK2 cation efflux family protein YP_693094.1 1561008 R 393595 CDS YP_693095.1 110834236 4211759 complement(1561999..1562358) 1 NC_008260.1 hypothetical protein 1562358 4211759 ABO_1375 Alcanivorax borkumensis SK2 hypothetical protein YP_693095.1 1561999 R 393595 CDS YP_693096.1 110834237 4211760 complement(1562746..1563633) 1 NC_008260.1 conserved hypothetical protein; hypothetical protein 1563633 4211760 ABO_1376 Alcanivorax borkumensis SK2 hypothetical protein YP_693096.1 1562746 R 393595 CDS YP_693097.1 110834238 4212584 complement(1563741..1566866) 1 NC_008260.1 (CzcA) cobalt/zinc/cadmium efflux RND transporterpermease protein (CzcA family) identified by match to PFAM protein family HMMPF04295 InterPro: Heavy metal efflux pump CzcA; Family membership; cobalt/zinc/cadmium efflux RND transporter permease 1566866 czcA1 4212584 czcA1 Alcanivorax borkumensis SK2 cobalt/zinc/cadmium efflux RND transporter permease YP_693097.1 1563741 R 393595 CDS YP_693098.1 110834239 4212588 complement(1566878..1568110) 1 NC_008260.1 heavy metal RND efflux membrane fusion protein (CzcB family) identified by sequence similarity; Family membership; CzcB family heavy metal RND efflux membrane fusion protein 1568110 czcB1 4212588 czcB1 Alcanivorax borkumensis SK2 CzcB family heavy metal RND efflux membrane fusion protein YP_693098.1 1566878 R 393595 CDS YP_693099.1 110834240 4213276 complement(1568129..1569439) 1 NC_008260.1 cobalt/zinc/cadmium efflux RND transporter outermembrane protein (CzcC family) identified by sequencesimilarity; InterPro: Outer membrane efflux protein; Family membership; cobalt/zinc/cadmium efflux RND transporter outermembrane protein 1569439 czcC1 4213276 czcC1 Alcanivorax borkumensis SK2 cobalt/zinc/cadmium efflux RND transporter outermembrane protein YP_693099.1 1568129 R 393595 CDS YP_693100.1 110834241 4211761 complement(1570817..1571584) 1 NC_008260.1 (hydrolase, alpha/beta fold protein family, ) identify by sequence similarity and Pfam; InterPro: Alpha/beta hydrolase fold; Family membership; alpha/beta hydrolase 1571584 4211761 ABO_1380 Alcanivorax borkumensis SK2 alpha/beta hydrolase YP_693100.1 1570817 R 393595 CDS YP_693101.1 110834242 4213278 1572287..1573585 1 NC_008260.1 (cobalt/zinc/cadmium efflux RND transporter outermembrane protein CzcC family) identified by sequencesimilarity; InterPro: Outer membrane efflux protein; Conserved hypothetical protein; cobalt/zinc/cadmium efflux RND transporter outermembrane protein 1573585 czcC3 4213278 czcC3 Alcanivorax borkumensis SK2 cobalt/zinc/cadmium efflux RND transporter outermembrane protein YP_693101.1 1572287 D 393595 CDS YP_693102.1 110834243 4212590 1573582..1574811 1 NC_008260.1 (heavy metal RND efflux membrane fusion protein,CzcB family) identified by sequence similarity; Family membership; CzcB family heavy metal RND efflux membrane fusion protein 1574811 czcB3 4212590 czcB3 Alcanivorax borkumensis SK2 CzcB family heavy metal RND efflux membrane fusion protein YP_693102.1 1573582 D 393595 CDS YP_693103.1 110834244 4212586 1574823..1577942 1 NC_008260.1 (cobalt/zinc/cadmium efflux RND transporterpermease protein CzcA family) identified by match to PFAM protein family HMMPF04295 InterPro: Heavy metal efflux pump CzcA; Family membership; cobalt/zinc/cadmium efflux RND transporter permease 1577942 czcA3 4212586 czcA3 Alcanivorax borkumensis SK2 cobalt/zinc/cadmium efflux RND transporter permease YP_693103.1 1574823 D 393595 CDS YP_693104.1 110834245 4211762 complement(1578127..1579305) 1 NC_008260.1 identified by Glimmer2; hypothetical protein 1579305 4211762 ABO_1384 Alcanivorax borkumensis SK2 hypothetical protein YP_693104.1 1578127 R 393595 CDS YP_693105.1 110834246 4211763 complement(1579324..1580166) 1 NC_008260.1 (ATPase, AAA family protein, ) identified by match to PFAM protein family HMMPF00004; Family membership; ATPase 1580166 4211763 ABO_1385 Alcanivorax borkumensis SK2 ATPase YP_693105.1 1579324 R 393595 CDS YP_693106.1 110834247 4211764 1580364..1581080 1 NC_008260.1 in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE 1581080 4211764 ABO_1386 Alcanivorax borkumensis SK2 16S ribosomal RNA methyltransferase RsmE YP_693106.1 1580364 D 393595 CDS YP_693107.1 110834248 4211765 complement(1581184..1582026) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01479 InterPro: Conserved hypothetical protein 93; S4 domain-containing protein 1582026 4211765 ABO_1387 Alcanivorax borkumensis SK2 S4 domain-containing protein YP_693107.1 1581184 R 393595 CDS YP_693108.1 110834249 4211766 complement(1582019..1582978) 1 NC_008260.1 (conserved hypothetical protein TIGR00281) identified by match to PFAM protein family HMMPF04079; transcriptional regulator 1582978 4211766 ABO_1388 Alcanivorax borkumensis SK2 transcriptional regulator YP_693108.1 1582019 R 393595 CDS YP_693109.1 110834250 4211767 complement(1582981..1583967) 1 NC_008260.1 identified by match to PFAM protein family HMMPF02616 InterPro: DUF173; hypothetical protein 1583967 4211767 ABO_1389 Alcanivorax borkumensis SK2 hypothetical protein YP_693109.1 1582981 R 393595 CDS YP_693110.1 110834251 4211823 complement(1583980..1585155) 1 NC_008260.1 catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1585155 trpS 4211823 trpS Alcanivorax borkumensis SK2 tryptophanyl-tRNA synthetase YP_693110.1 1583980 R 393595 CDS YP_693111.1 110834252 4211768 complement(1585336..1585959) 1 NC_008260.1 Sua5/YciO/YrdC/YwlC family protein) identified by match to TIGR protein family HMMTIGR00057 InterPro: Sua5/YciO/YrdC/YwlC protein family; Family membership; Sua5/YciO/YrdC/YwlC family protein 1585959 4211768 ABO_1391 Alcanivorax borkumensis SK2 Sua5/YciO/YrdC/YwlC family protein YP_693111.1 1585336 R 393595 CDS YP_693112.1 110834253 4211769 complement(1586074..1586910) 1 NC_008260.1 (Polymerase and Histidinol Phosphatase, PHP domain N-terminal region:PHP domain C-terminal region, ) identified by match to PFAM protein family HMMPF02231; Family membership; polymerase and histidinol phosphatase PHP 1586910 4211769 ABO_1392 Alcanivorax borkumensis SK2 polymerase and histidinol phosphatase PHP YP_693112.1 1586074 R 393595 CDS YP_693113.1 110834254 4211210 1587068..1587799 1 NC_008260.1 Family membership; intracellular septation protein A 1587799 ispZ 4211210 ispZ Alcanivorax borkumensis SK2 intracellular septation protein A YP_693113.1 1587068 D 393595 CDS YP_693114.1 110834255 4211787 1587777..1588076 1 NC_008260.1 unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; hypothetical protein 1588076 yciI 4211787 yciI Alcanivorax borkumensis SK2 hypothetical protein YP_693114.1 1587777 D 393595 CDS YP_693115.1 110834256 4211770 1588225..1588887 1 NC_008260.1 (conserved hypothetical protein; SH3 domain protein) identified by sequencesimilarity; hypothetical protein 1588887 4211770 ABO_1395 Alcanivorax borkumensis SK2 hypothetical protein YP_693115.1 1588225 D 393595 CDS YP_693116.1 110834257 4211771 complement(1588945..1590147) 1 NC_008260.1 hypothetical protein 1590147 4211771 ABO_1396 Alcanivorax borkumensis SK2 hypothetical protein YP_693116.1 1588945 R 393595 CDS YP_693117.1 110834258 4211772 1590189..1591082 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00530, InterPro: Phospholipid and glycerol acyltransferase (from motifs_6.msf); Family membership; acyltransferase 1591082 4211772 ABO_1397 Alcanivorax borkumensis SK2 acyltransferase YP_693117.1 1590189 D 393595 CDS YP_693118.1 110834259 4211773 1591019..1593697 1 NC_008260.1 hypothetical protein 1593697 4211773 ABO_1398 Alcanivorax borkumensis SK2 hypothetical protein YP_693118.1 1591019 D 393595 CDS YP_693119.1 110834260 4211774 complement(1594143..1594766) 1 NC_008260.1 hypothetical protein 1594766 4211774 ABO_1399 Alcanivorax borkumensis SK2 hypothetical protein YP_693119.1 1594143 R 393595 CDS YP_693120.1 110834262 4211932 complement(1594763..1595431) 1 NC_008260.1 (GDSL lipase/acylhydrolase family protein) identified by match to PFAM protein family HMMPF00657; InterPro: GDSL lipolytic enzyme; High confidence in function and specificity; acyl-CoA thioesterase 1595431 tesA 4211932 tesA Alcanivorax borkumensis SK2 acyl-CoA thioesterase YP_693120.1 1594763 R 393595 CDS YP_693121.1 110834261 4211775 1595397..1596074 1 NC_008260.1 polyamine ABC transporter ATP-binding protein identified by match to TIGR protein family HMMTIGR01187 InterPro: AAA ATPase superfamily; Family membership; ABC transporter ATP-binding protein 1596074 4211775 ABO_1401 Alcanivorax borkumensis SK2 ABC transporter ATP-binding protein YP_693121.1 1595397 D 393595 CDS YP_693122.1 110834263 4213256 1596067..1598472 1 NC_008260.1 ABC transporter permease protein identified by sequencesimilarity; Specificity unclear; ABC transporter permease 1598472 4213256 ABO_1402 Alcanivorax borkumensis SK2 ABC transporter permease YP_693122.1 1596067 D 393595 CDS YP_693123.1 110834264 4213257 complement(1598455..1599672) 1 NC_008260.1 (multidrug resistance transporter Bcr/CflAfamily) identified by match to TIGR protein family HMMTIGR00880; InterPro: Drug resistance transporter Bcr/CflA subfamily; Family membership; Bcr/CflA family multidrug resistance transporter 1599672 4213257 ABO_1403 Alcanivorax borkumensis SK2 Bcr/CflA family multidrug resistance transporter YP_693123.1 1598455 R 393595 CDS YP_693124.1 110834265 4211432 1600032..1601990 1 NC_008260.1 identified by match to PFAM protein family HMMPF04290 InterPro: Na+/H+ exchanger; Family membership; NhaP-type Na+/H+ and K+/H+ antiporters 1601990 nhaP 4211432 nhaP Alcanivorax borkumensis SK2 NhaP-type Na+/H+ and K+/H+ antiporters YP_693124.1 1600032 D 393595 CDS YP_693125.1 110834266 4213258 complement(1602048..1602485) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00376 InterPro: Bacterial regulatory proteins MerR family; Family membership; MerR family transcriptional regulator 1602485 4213258 ABO_1405 Alcanivorax borkumensis SK2 MerR family transcriptional regulator YP_693125.1 1602048 R 393595 CDS YP_693126.1 110834267 4213259 complement(1602491..1603462) 1 NC_008260.1 hypothetical protein 1603462 4213259 ABO_1406 Alcanivorax borkumensis SK2 hypothetical protein YP_693126.1 1602491 R 393595 CDS YP_693127.1 110834268 4213260 complement(1603520..1605082) 1 NC_008260.1 (sugar kinase) identified by sequence similarity; InterPro: Carbohydrate kinase FGGY family; Family membership; sugar kinase 1605082 4213260 ABO_1407 Alcanivorax borkumensis SK2 sugar kinase YP_693127.1 1603520 R 393595 CDS YP_693128.1 110834269 4211191 complement(1605082..1606641) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01266 InterPro: D-amino acid oxidase; High confidence in function and specificity; glycerol-3-phosphate dehydrogenase 1606641 glpD 4211191 glpD Alcanivorax borkumensis SK2 glycerol-3-phosphate dehydrogenase YP_693128.1 1605082 R 393595 CDS YP_693129.1 110834270 4213261 complement(1606663..1608294) 1 NC_008260.1 InterPro: FAD linked oxidase C-terminal; Function unclear; alkylglycerone-phosphate synthase 1608294 4213261 ABO_1409 Alcanivorax borkumensis SK2 alkylglycerone-phosphate synthase YP_693129.1 1606663 R 393595 CDS YP_693130.1 110834271 4213262 complement(1608404..1609228) 1 NC_008260.1 (Acyltransferase family protein) identified by sequencesimilarity; InterPro: Phospholipid and glycerol acyltransferase (from motifs_6.msf); Family membership; acyltransferase 1609228 4213262 ABO_1410 Alcanivorax borkumensis SK2 acyltransferase YP_693130.1 1608404 R 393595 CDS YP_693131.1 110834272 4213263 1609375..1610040 1 NC_008260.1 identified by match to PFAM protein family HMMPF00691 InterPro: Bacterial outer membrane protein; Family membership; OmpA family protein 1610040 4213263 ABO_1411 Alcanivorax borkumensis SK2 OmpA family protein YP_693131.1 1609375 D 393595 CDS YP_693132.1 110834273 4211282 1610256..1611320 1 NC_008260.1 (adaptive response regulator protein) identified by match to PFAM protein family HMMPF01035 InterPro: Methylated-DNA--protein-cysteine methyltransferase AraC type helix-turn-helix; High confidence in function and specificity; methylated-DNA-[protein]-cysteine S-methyltransferase 1611320 ada 4211282 ada Alcanivorax borkumensis SK2 methylated-DNA-[protein]-cysteine S-methyltransferase YP_693132.1 1610256 D 393595 CDS YP_693133.1 110834274 4213264 1611317..1612192 1 NC_008260.1 hypothetical protein 1612192 4213264 ABO_1413 Alcanivorax borkumensis SK2 hypothetical protein YP_693133.1 1611317 D 393595 CDS YP_693134.1 110834276 4213265 complement(1612215..1613459) 1 NC_008260.1 transporter identified by match to PFAM protein family HMMPF03600; Specificity unclear; MFS transporter 1613459 4213265 ABO_1414 Alcanivorax borkumensis SK2 MFS transporter YP_693134.1 1612215 R 393595 CDS YP_693135.1 110834275 4213266 1613453..1614286 1 NC_008260.1 (hypothetical protein) identified by sequencesimilarity; hypothetical protein 1614286 4213266 ABO_1415 Alcanivorax borkumensis SK2 hypothetical protein YP_693135.1 1613453 D 393595 CDS YP_693136.1 110834277 4213267 complement(1614268..1615380) 1 NC_008260.1 conserved hypothetical protein; hypothetical protein 1615380 4213267 ABO_1416 Alcanivorax borkumensis SK2 hypothetical protein YP_693136.1 1614268 R 393595 CDS YP_693137.1 110834278 4213268 complement(1615511..1615975) 1 NC_008260.1 Uncharacterized protein, possibly involved in aromatic compounds catabolism (translation initiation factor, probable) identified by match to TIGR protein family HMMTIGR00369; hypothetical protein 1615975 4213268 ABO_1417 Alcanivorax borkumensis SK2 hypothetical protein YP_693137.1 1615511 R 393595 CDS YP_693138.1 110834279 4211333 1616572..1617705 1 NC_008260.1 Alpha/beta hydrolase fold, PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; High confidence in function and specificity; polyhydroxyalkanoate synthase 1617705 phaC2 4211333 phaC2 Alcanivorax borkumensis SK2 polyhydroxyalkanoate synthase YP_693138.1 1616572 D 393595 CDS YP_693139.1 110834280 4213269 complement(1617738..1618547) 1 NC_008260.1 hypothetical protein 1618547 4213269 ABO_1419 Alcanivorax borkumensis SK2 hypothetical protein YP_693139.1 1617738 R 393595 CDS YP_693140.1 110834281 4213270 complement(1618596..1619396) 1 NC_008260.1 Conserved hypothetical protein; hypothetical protein 1619396 4213270 ABO_1420 Alcanivorax borkumensis SK2 hypothetical protein YP_693140.1 1618596 R 393595 CDS YP_693141.1 110834282 4213271 complement(1619809..1620195) 1 NC_008260.1 hypothetical protein 1620195 4213271 ABO_1421 Alcanivorax borkumensis SK2 hypothetical protein YP_693141.1 1619809 R 393595 CDS YP_693142.1 110834283 4213272 complement(1620185..1620967) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00991 InterPro: ParA family ATPase; Family membership; ParA family protein 1620967 4213272 ABO_1422 Alcanivorax borkumensis SK2 ParA family protein YP_693142.1 1620185 R 393595 CDS YP_693143.1 110834284 4212773 complement(1621588..1622952) 1 NC_008260.1 identified by sequencesimilarity; InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; High confidence in function and specificity; glutathione reductase 1622952 gor 4212773 gor Alcanivorax borkumensis SK2 glutathione reductase YP_693143.1 1621588 R 393595 CDS YP_693144.1 110834285 4213273 complement(1623041..1624615) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF01645 InterPro: Ferredoxin-dependent glutamate synthase; Function unclear; glutamate synthase large subunit 1624615 4213273 ABO_1424 Alcanivorax borkumensis SK2 glutamate synthase large subunit YP_693144.1 1623041 R 393595 CDS YP_693145.1 110834286 4213274 1624882..1625532 1 NC_008260.1 identified by sequencesimilarity; InterPro: SLT domain; High confidence in function and specificity; lytic transglycosylase 1625532 4213274 ABO_1425 Alcanivorax borkumensis SK2 lytic transglycosylase YP_693145.1 1624882 D 393595 CDS YP_693146.1 110834287 4213275 complement(1625710..1626006) 1 NC_008260.1 Family membership; hypothetical protein 1626006 4213275 ABO_1426 Alcanivorax borkumensis SK2 hypothetical protein YP_693146.1 1625710 R 393595 CDS YP_693147.1 110834288 4212275 complement(1626156..1628528) 1 NC_008260.1 catalyzes the formation of phosphoenolpyruvate from pyruvate; phosphoenolpyruvate synthase 1628528 ppsA 4212275 ppsA Alcanivorax borkumensis SK2 phosphoenolpyruvate synthase YP_693147.1 1626156 R 393595 CDS YP_693148.1 110834289 4212611 1629053..1629871 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 1629871 4212611 ABO_1428 Alcanivorax borkumensis SK2 hypothetical protein YP_693148.1 1629053 D 393595 CDS YP_693149.1 110834290 4211225 complement(1630276..1631778) 1 NC_008260.1 functions in propionate metabolism; involved in isomerization of (2S,3S)-methylcitrate to (2R,3S)-methylisocitrate; also encodes minor aconitase or dehydratase activity; aconitase C; 2-methylcitrate dehydratase 1631778 prpD 4211225 prpD Alcanivorax borkumensis SK2 2-methylcitrate dehydratase YP_693149.1 1630276 R 393595 CDS YP_693150.1 110834291 4212612 complement(1631907..1633085) 1 NC_008260.1 identified by match to PFAM protein family HMMPF04303; hypothetical protein 1633085 4212612 ABO_1430 Alcanivorax borkumensis SK2 hypothetical protein YP_693150.1 1631907 R 393595 CDS YP_693151.1 110834292 4211812 complement(1633232..1635823) 1 NC_008260.1 Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 1635823 acna 4211812 acna Alcanivorax borkumensis SK2 aconitate hydratase YP_693151.1 1633232 R 393595 CDS YP_693152.1 110834293 4211224 complement(1635945..1637156) 1 NC_008260.1 methylcitrate synthase identified by sequence similarity; InterPro: Citrate synthase; High confidence in function and specificity; 2-methylcitrate synthase 1637156 prpC 4211224 prpC Alcanivorax borkumensis SK2 2-methylcitrate synthase YP_693152.1 1635945 R 393595 CDS YP_693153.1 110834294 4211223 complement(1637193..1638083) 1 NC_008260.1 catalyzes the formation of pyruvate and succinate from 2-methylisocitrate; 2-methylisocitrate lyase 1638083 prpB 4211223 prpB Alcanivorax borkumensis SK2 2-methylisocitrate lyase YP_693153.1 1637193 R 393595 CDS YP_693154.1 110834295 4212613 complement(1638093..1638791) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00392 InterPro: Bacterial regulatory proteins GntR family; Family membership; GntR family transcriptional regulator 1638791 4212613 ABO_1434 Alcanivorax borkumensis SK2 GntR family transcriptional regulator YP_693154.1 1638093 R 393595 CDS YP_693155.1 110834296 4212614 1639292..1640428 1 NC_008260.1 (para-aminobenzoate synthase component I, ) identified by sequence similarity; identified by match to PFAM protein family HMMPF00425 and match to TIGRFAM protein family HMMTIGR00553 InterPro: Anthranilate synthase component I and chorismate binding enzyme; Function unclear; para-aminobenzoate synthase component I 1640428 4212614 ABO_1435 Alcanivorax borkumensis SK2 para-aminobenzoate synthase component I YP_693155.1 1639292 D 393595 CDS YP_693156.1 110834297 4212615 complement(1640502..1641119) 1 NC_008260.1 catalyzes the formation of serine from phosphoserine; also has phosphoserine:homoserine phosphotransferase activity; phosphoserine phosphatase 1641119 thrH 4212615 thrH Alcanivorax borkumensis SK2 phosphoserine phosphatase YP_693156.1 1640502 R 393595 CDS YP_693157.1 110834298 4213665 complement(1641291..1642268) 1 NC_008260.1 LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1642268 cysB 4213665 cysB Alcanivorax borkumensis SK2 transcriptional regulator CysB YP_693157.1 1641291 R 393595 CDS YP_693158.1 110834299 4212616 complement(1642475..1643395) 1 NC_008260.1 5-nucleotidase identified by sequencesimilarity; Conserved hypothetical protein; 5'-nucleotidase 1643395 4212616 ABO_1438 Alcanivorax borkumensis SK2 5'-nucleotidase YP_693158.1 1642475 R 393595 CDS YP_693159.1 110834300 4212617 1643711..1644328 1 NC_008260.1 hypothetical protein 1644328 4212617 ABO_1439 Alcanivorax borkumensis SK2 hypothetical protein YP_693159.1 1643711 D 393595 CDS YP_693160.1 110834301 4212618 1645192..1645974 1 NC_008260.1 hypothetical protein 1645974 4212618 ABO_1440 Alcanivorax borkumensis SK2 hypothetical protein YP_693160.1 1645192 D 393595 CDS YP_693161.1 110834302 4212619 complement(1645911..1646402) 1 NC_008260.1 hypothetical protein 1646402 4212619 ABO_1441 Alcanivorax borkumensis SK2 hypothetical protein YP_693161.1 1645911 R 393595 CDS YP_693162.1 110834303 4212620 complement(1646381..1646779) 1 NC_008260.1 Conserved hypothetical protein; hypothetical protein 1646779 4212620 ABO_1442 Alcanivorax borkumensis SK2 hypothetical protein YP_693162.1 1646381 R 393595 CDS YP_693163.1 110834304 4212621 1646807..1647262 1 NC_008260.1 hypothetical protein 1647262 4212621 ABO_1443 Alcanivorax borkumensis SK2 hypothetical protein YP_693163.1 1646807 D 393595 CDS YP_693164.1 110834305 4213345 1647252..1648292 1 NC_008260.1 initiation factor 2 subunit family; High confidence in function and specificity; initiation factor eIF-2B 1648292 eif 4213345 eif Alcanivorax borkumensis SK2 initiation factor eIF-2B YP_693164.1 1647252 D 393595 CDS YP_693165.1 110834306 4212622 1648294..1648929 1 NC_008260.1 ( sugar aldolase) identified by match to TIGR protein family HMMTIGR01086, Family membership; sugar aldolase 1648929 4212622 ABO_1445 Alcanivorax borkumensis SK2 sugar aldolase YP_693165.1 1648294 D 393595 CDS YP_693166.1 110834307 4212623 1648982..1649527 1 NC_008260.1 InterPro: Acireductone dioxygenase (ARD and ARD); Family membership; ARD/ARD' family protein 1649527 4212623 ABO_1446 Alcanivorax borkumensis SK2 ARD/ARD' family protein YP_693166.1 1648982 D 393595 CDS YP_693167.1 110834308 4212624 1649607..1650302 1 NC_008260.1 identified by sequencesimilarity; InterPro: Haloacid dehalogenase/epoxide hydrolase family; Family membership; enolase 1650302 4212624 ABO_1447 Alcanivorax borkumensis SK2 enolase YP_693167.1 1649607 D 393595 CDS YP_693168.1 110834309 4212572 complement(1650286..1651536) 1 NC_008260.1 (rmsC) identify by sequence similarity.; Family membership; ribosomal ribonucleate guanine-2-methyltransferase 1651536 rsmC 4212572 rsmC Alcanivorax borkumensis SK2 ribosomal ribonucleate guanine-2-methyltransferase YP_693168.1 1650286 R 393595 CDS YP_693169.1 110834310 4211486 complement(1651815..1654259) 1 NC_008260.1 identified by sequencesimilarity; InterPro: DEAD/DEAH box helicase; High confidence in function and specificity; hypothetical protein 1654259 hrpB 4211486 hrpB Alcanivorax borkumensis SK2 hypothetical protein YP_693169.1 1651815 R 393595 CDS YP_693170.1 110834311 4212625 1654400..1654966 1 NC_008260.1 hypothetical protein 1654966 4212625 ABO_1450 Alcanivorax borkumensis SK2 hypothetical protein YP_693170.1 1654400 D 393595 CDS YP_693171.1 110834312 4212626 complement(1655316..1657352) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01841; Family membership; transglutaminase 1657352 4212626 ABO_1451 Alcanivorax borkumensis SK2 transglutaminase YP_693171.1 1655316 R 393595 CDS YP_693172.1 110834313 4212627 complement(1657352..1658308) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01882 InterPro: Protein of unknown function DUF58; hypothetical protein 1658308 4212627 ABO_1452 Alcanivorax borkumensis SK2 hypothetical protein YP_693172.1 1657352 R 393595 CDS YP_693173.1 110834314 4212628 complement(1658318..1659229) 1 NC_008260.1 (ATPase, AAA protein family, ) identified by match to PFAM protein family HMMPF00004; Family membership; ATPase AAA 1659229 4212628 ABO_1453 Alcanivorax borkumensis SK2 ATPase AAA YP_693173.1 1658318 R 393595 CDS YP_693174.1 110834315 4211509 complement(1659410..1660624) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF01053; InterPro: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; High confidence in function and specificity; O-succinylhomoserine sulfhydrylase 1660624 metZ 4211509 metZ Alcanivorax borkumensis SK2 O-succinylhomoserine sulfhydrylase YP_693174.1 1659410 R 393595 CDS YP_693175.1 110834316 4211145 complement(1660704..1662224) 1 NC_008260.1 Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 1662224 purF 4211145 purF Alcanivorax borkumensis SK2 amidophosphoribosyltransferase YP_693175.1 1660704 R 393595 CDS YP_693176.1 110834317 4213659 complement(1662236..1662730) 1 NC_008260.1 identified by sequence similarity; InterPro: Colicin V production protein; Family membership; colicin V production protein 1662730 cvpA 4213659 cvpA Alcanivorax borkumensis SK2 colicin V production protein YP_693176.1 1662236 R 393595 CDS YP_693177.1 110834318 4212629 complement(1662949..1663584) 1 NC_008260.1 identified by Glimmer2; Function unclear; hypothetical protein 1663584 4212629 ABO_1457 Alcanivorax borkumensis SK2 hypothetical protein YP_693177.1 1662949 R 393595 CDS YP_693178.1 110834319 4212486 complement(1663626..1664858) 1 NC_008260.1 identified by sequence similarity; InterPro: Cytoplasmic peptidoglycan synthetases N-terminal; High confidence in function and specificity; folylpolyglutamate synthase / dihydrofolate synthase 1664858 folC 4212486 folC Alcanivorax borkumensis SK2 folylpolyglutamate synthase / dihydrofolate synthase YP_693178.1 1663626 R 393595 CDS YP_693179.1 110834320 4211802 complement(1664851..1665732) 1 NC_008260.1 (acetyl-CoA carboxylase carboxyl transferase beta subunit) identified by match to PFAM protein family HMMPF04067 InterPro: Acetyl-CoA carboxylase carboxyl transferase beta subunit; High confidence in function and specificity; acetyl-CoA carboxylase, carboxyl transferase 1665732 accD 4211802 accD Alcanivorax borkumensis SK2 acetyl-CoA carboxylase, carboxyl transferase YP_693179.1 1664851 R 393595 CDS YP_693180.1 110834321 4211816 complement(1665745..1666548) 1 NC_008260.1 catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1666548 trpA 4211816 trpA Alcanivorax borkumensis SK2 tryptophan synthase subunit alpha YP_693180.1 1665745 R 393595 CDS YP_693181.1 110834322 4211817 complement(1666657..1667868) 1 NC_008260.1 catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1667868 trpB 4211817 trpB Alcanivorax borkumensis SK2 tryptophan synthase subunit beta YP_693181.1 1666657 R 393595 CDS YP_693182.1 110834323 4211821 complement(1667861..1668517) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF00697 InterPro: N-(5phosphoribosyl)anthranilate isomerase (PRAI); High confidence in function and specificity; N-(5'-phosphoribosyl)anthranilate isomerase 1668517 trpF 4211821 trpF Alcanivorax borkumensis SK2 N-(5'-phosphoribosyl)anthranilate isomerase YP_693182.1 1667861 R 393595 CDS YP_693183.1 110834324 4211824 complement(1668558..1669361) 1 NC_008260.1 mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 1669361 truA 4211824 truA Alcanivorax borkumensis SK2 tRNA pseudouridine synthase A YP_693183.1 1668558 R 393595 CDS YP_693184.1 110834325 4213119 complement(1669463..1672501) 1 NC_008260.1 identified by sequence similarity; hypothetical protein 1672501 4213119 ABO_1464 Alcanivorax borkumensis SK2 hypothetical protein YP_693184.1 1669463 R 393595 CDS YP_693185.1 110834326 4213836 complement(1672663..1673679) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein families HMMPF01118 and HMMPF02774 InterPro: Semialdehyde dehydrogenase; High confidence in function and specificity; aspartate-semialdehyde dehydrogenase 1673679 asd-1 4213836 asd-1 Alcanivorax borkumensis SK2 aspartate-semialdehyde dehydrogenase YP_693185.1 1672663 R 393595 CDS YP_693186.1 110834327 4213837 complement(1673703..1674815) 1 NC_008260.1 catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1674815 asd-2 4213837 asd-2 Alcanivorax borkumensis SK2 aspartate-semialdehyde dehydrogenase YP_693186.1 1673703 R 393595 CDS YP_693187.1 110834328 4211539 complement(1674893..1675969) 1 NC_008260.1 (3-isopropylmalate dehydrogenase, beta-ipm dehydrogenase) identified by sequence similarity; identified by match to PFAM protein family HMMPF00180 and TIGRFAM protein family HMMTIGR00169 InterPro: Isocitrate and isopropylmalate dehydrogenases 3-isopropylmalate dehydrogenase; High confidence in function and specificity; 3-isopropylmalate dehydrogenase 1675969 leuB 4211539 leuB Alcanivorax borkumensis SK2 3-isopropylmalate dehydrogenase YP_693187.1 1674893 R 393595 CDS YP_693188.1 110834329 4213120 complement(1676004..1676450) 1 NC_008260.1 Function unclear; hypothetical protein 1676450 4213120 ABO_1468 Alcanivorax borkumensis SK2 hypothetical protein YP_693188.1 1676004 R 393595 CDS YP_693189.1 110834330 4211541 complement(1676472..1677116) 1 NC_008260.1 (3-isopropylmalate dehydratase small subunit,isopropylmalate isomerase, alpha-ipm isomerase) identified by sequence similarity; identified by match to TIGRFAM protein family HMMTIGR00171 InterPro: 3-isopropylmalate dehydratase small subunit; High confidence in function and specificity; 3-isopropylmalate dehydratase small subunit 1677116 leuD 4211541 leuD Alcanivorax borkumensis SK2 3-isopropylmalate dehydratase small subunit YP_693189.1 1676472 R 393595 CDS YP_693190.1 110834331 4211540 complement(1677128..1678588) 1 NC_008260.1 dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1678588 leuC 4211540 leuC Alcanivorax borkumensis SK2 isopropylmalate isomerase large subunit YP_693190.1 1677128 R 393595 CDS YP_693191.1 110834332 4213121 1678698..1679588 1 NC_008260.1 identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family; Family membership; LysR family transcriptional regulator 1679588 4213121 ABO_1471 Alcanivorax borkumensis SK2 LysR family transcriptional regulator YP_693191.1 1678698 D 393595 CDS YP_693192.1 110834333 4213122 complement(1679581..1680741) 1 NC_008260.1 conserved hypothetical protein, probable MFS metabolite transporter, hypothetical transport protein ywbf.; Family membership; hypothetical protein 1680741 4213122 ABO_1472 Alcanivorax borkumensis SK2 hypothetical protein YP_693192.1 1679581 R 393595 CDS YP_693193.1 110834334 4213486 complement(1680860..1681951) 1 NC_008260.1 catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1681951 aroC 4213486 aroC Alcanivorax borkumensis SK2 chorismate synthase YP_693193.1 1680860 R 393595 CDS YP_693194.1 110834335 4211792 complement(1682064..1682984) 1 NC_008260.1 involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1682984 yfcB 4211792 yfcB Alcanivorax borkumensis SK2 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase YP_693194.1 1682064 R 393595 CDS YP_693195.1 110834336 4213123 1683334..1683813 1 NC_008260.1 hypothetical protein 1683813 4213123 ABO_1475 Alcanivorax borkumensis SK2 hypothetical protein YP_693195.1 1683334 D 393595 CDS YP_693196.1 110834337 4213410 1683965..1685275 1 NC_008260.1 identified by match to PFAM protein family HMMPF00909 InterPro: Ammonium transporter family; High confidence in function and specificity; ammonium transporter 1685275 amtB2 4213410 amtB2 Alcanivorax borkumensis SK2 ammonium transporter YP_693196.1 1683965 D 393595 CDS YP_693197.1 110834338 4213124 1685272..1685904 1 NC_008260.1 hypothetical protein 1685904 4213124 ABO_1477 Alcanivorax borkumensis SK2 hypothetical protein YP_693197.1 1685272 D 393595 CDS YP_693198.1 110834339 4211197 1685981..1687285 1 NC_008260.1 (proton/sodium-glutamate/aspartate symporter) identified by match to PFAM protein family HMMPF03600 InterPro: Sodium:dicarboxylate symporter family; Family membership; sodium:dicarboxylate symporter family protein 1687285 gltP 4211197 gltP Alcanivorax borkumensis SK2 sodium:dicarboxylate symporter family protein YP_693198.1 1685981 D 393595 CDS YP_693199.1 110834340 4213125 1687637..1688461 1 NC_008260.1 oxidoreductase short chaindehydrogenase/reductase family identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; short chain dehydrogenase/reductase family oxidoreductase 1688461 4213125 ABO_1479 Alcanivorax borkumensis SK2 short chain dehydrogenase/reductase family oxidoreductase YP_693199.1 1687637 D 393595 CDS YP_693200.1 110834341 4213126 complement(1688519..1689025) 1 NC_008260.1 hypothetical protein 1689025 4213126 ABO_1480 Alcanivorax borkumensis SK2 hypothetical protein YP_693200.1 1688519 R 393595 CDS YP_693201.1 110834342 4212571 complement(1689022..1690110) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00990 InterPro: Domain of unknown function DUF9; Family membership; response regulator 1690110 rrp-1 4212571 rrp-1 Alcanivorax borkumensis SK2 response regulator YP_693201.1 1689022 R 393595 CDS YP_693202.1 110834343 4213127 complement(1690526..1690987) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01575 InterPro: MaoC-like dehydratase domain; Family membership; acyl dehydratase MaoC 1690987 4213127 ABO_1482 Alcanivorax borkumensis SK2 acyl dehydratase MaoC YP_693202.1 1690526 R 393595 CDS YP_693203.1 110834344 4213128 complement(1691096..1691983) 1 NC_008260.1 hydrolase (acting on ester bonds) identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Family membership; hydrolase 1691983 4213128 ABO_1483 Alcanivorax borkumensis SK2 hydrolase YP_693203.1 1691096 R 393595 CDS YP_693204.1 110834345 4213129 complement(1691987..1692838) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01738; Family membership; hypothetical protein 1692838 4213129 ABO_1484 Alcanivorax borkumensis SK2 hypothetical protein YP_693204.1 1691987 R 393595 CDS YP_693205.1 110834346 4211781 1693134..1693949 1 NC_008260.1 (xth) , (Exonuclease III),(EXO III),(APendonuclease VI). identified by sequencesimilarity; InterPro: AP endonucleases family 1 Exodeoxyribonuclease III xth; High confidence in function and specificity; exodeoxyribonuclease III 1693949 xthA 4211781 xthA Alcanivorax borkumensis SK2 exodeoxyribonuclease III YP_693205.1 1693134 D 393595 CDS YP_693206.1 110834347 4213130 1693962..1694990 1 NC_008260.1 hypothetical protein 1694990 4213130 ABO_1486 Alcanivorax borkumensis SK2 hypothetical protein YP_693206.1 1693962 D 393595 CDS YP_693207.1 110834348 4213634 complement(1695431..1695907) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00249 InterPro: Phosphohistidine phosphatase SixA; High confidence in function and specificity; phosphohistidine phosphatase 1695907 sixA 4213634 sixA Alcanivorax borkumensis SK2 phosphohistidine phosphatase YP_693207.1 1695431 R 393595 CDS YP_693208.1 110834349 4212778 complement(1695904..1696935) 1 NC_008260.1 catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 1696935 gpsA 4212778 gpsA Alcanivorax borkumensis SK2 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase YP_693208.1 1695904 R 393595 CDS YP_693209.1 110834350 4211337 complement(1697172..1699019) 1 NC_008260.1 molecular chaperone; heat shock protein 90 1699019 htpG 4211337 htpG Alcanivorax borkumensis SK2 heat shock protein 90 YP_693209.1 1697172 R 393595 CDS YP_693210.1 110834351 4213131 complement(1699228..1700910) 1 NC_008260.1 hypothetical protein 1700910 4213131 ABO_1490 Alcanivorax borkumensis SK2 hypothetical protein YP_693210.1 1699228 R 393595 CDS YP_693211.1 110834352 4213132 1701207..1701446 1 NC_008260.1 hypothetical protein 1701446 4213132 ABO_1491 Alcanivorax borkumensis SK2 hypothetical protein YP_693211.1 1701207 D 393595 CDS YP_693212.1 110834353 4211975 complement(1701505..1702380) 1 NC_008260.1 identified by sequencesimilarity; InterPro: ATP-citrate lyase/succinyl-CoA ligases catalytic activity: atp + succinate + coa = adp + succinyl-coa + phosphate; High confidence in function and specificity; succinyl-CoA synthetase subunit alpha 1702380 sucD 4211975 sucD Alcanivorax borkumensis SK2 succinyl-CoA synthetase subunit alpha YP_693212.1 1701505 R 393595 CDS YP_693213.1 110834354 4211974 complement(1702377..1703546) 1 NC_008260.1 identified by sequence similarity; InterPro: ATP-grasp domain catalytic activity: atp + succinate + coa = adp + succinyl-coa + phosphate; High confidence in function and specificity; succinyl-CoA synthetase subunit beta 1703546 sucC 4211974 sucC Alcanivorax borkumensis SK2 succinyl-CoA synthetase subunit beta YP_693213.1 1702377 R 393595 CDS YP_693214.1 110834355 4211459 complement(1703619..1705058) 1 NC_008260.1 (2-oxoglutarate dehydrogenase lipoamidedehydrogenase component) identified by sequence similarity; catalytic activity: dihydrolipoamide + nad(+) = lipoamide + nadh; High confidence in function and specificity; 2-oxoglutarate dehydrogenase lipoamide dehydrogenase component 1705058 lpdG 4211459 lpdG Alcanivorax borkumensis SK2 2-oxoglutarate dehydrogenase lipoamide dehydrogenase component YP_693214.1 1703619 R 393595 CDS YP_693215.1 110834356 4211973 complement(1705148..1706413) 1 NC_008260.1 (dihydrolipoamidesuccinyltransferase) identified by sequence similarity; InterPro: 2-Oxo acid dehydrogenase acyltransferase catalytic domain catalytic activity: succinyl-coa + dihydrolipoamide = coa + s-succinyldihydrolipoamide the e2 component contains one covalently-bound lipoyl cofactor; High confidence in function and specificity; dihydrolipoamide succinyltransferase 1706413 sucB 4211973 sucB Alcanivorax borkumensis SK2 dihydrolipoamide succinyltransferase YP_693215.1 1705148 R 393595 CDS YP_693216.1 110834357 4211972 complement(1706429..1709263) 1 NC_008260.1 SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 1709263 sucA 4211972 sucA Alcanivorax borkumensis SK2 2-oxoglutarate dehydrogenase E1 YP_693216.1 1706429 R 393595 CDS YP_693217.1 110834358 4212641 complement(1709652..1710368) 1 NC_008260.1 (succinate dehydrogenase iron-sulfur protein) identified by match to TIGR protein family HMMTIGR00384 InterPro: Succinate dehydrogenase/fumarate reductase iron-sulfur protein catalytic activity: succinate + ubiquinone = fumarate + ubiquinol; High confidence in function and specificity; succinate dehydrogenase, iron-sulfur 1710368 sdhB 4212641 sdhB Alcanivorax borkumensis SK2 succinate dehydrogenase, iron-sulfur YP_693217.1 1709652 R 393595 CDS YP_693218.1 110834359 4212640 complement(1710381..1712099) 1 NC_008260.1 part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 1712099 sdhA 4212640 sdhA Alcanivorax borkumensis SK2 succinate dehydrogenase flavoprotein subunit YP_693218.1 1710381 R 393595 CDS YP_693219.1 110834360 4212643 complement(1712160..1712531) 1 NC_008260.1 (succinate dehydrogenase hydrophobic membraneanchor protein) identified by sequence similarity; part of an enzyme complex containing four subunits: a flavoprotein, an iron-sulfur, cytochrome b-556, and an hydrophobic anchor protein.; Function unclear; succinate dehydrogenase, hydrophobic membrane anchor protein 1712531 sdhD 4212643 sdhD Alcanivorax borkumensis SK2 succinate dehydrogenase, hydrophobic membrane anchor protein YP_693219.1 1712160 R 393595 CDS YP_693220.1 110834361 4212642 complement(1712525..1712902) 1 NC_008260.1 identified by sequence similarity; part of an enzyme complex containing four subunits: a flavoprotein, an iron-sulfur, cytochrome b-556, and an hydrophobic anchor protein; High confidence in function and specificity; succinate dehydrogenase, cytochrome b556 subunit 1712902 sdhC 4212642 sdhC Alcanivorax borkumensis SK2 succinate dehydrogenase, cytochrome b556 subunit YP_693220.1 1712525 R 393595 CDS YP_693221.1 110834362 4211194 1713356..1714639 1 NC_008260.1 type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 1714639 gltA 4211194 gltA Alcanivorax borkumensis SK2 type II citrate synthase YP_693221.1 1713356 D 393595 CDS YP_693222.1 110834363 4213133 1714931..1716112 1 NC_008260.1 identifiedby sequence similarity; InterPro: Strictosidine synthase; hypothetical protein 1716112 4213133 ABO_1502 Alcanivorax borkumensis SK2 hypothetical protein YP_693222.1 1714931 D 393595 CDS YP_693223.1 110834364 4211591 1716109..1716990 1 NC_008260.1 identified by sequencesimilarity; Family membership; 3-hydroxyisobutyrate dehydrogenase 1716990 mmsB 4211591 mmsB Alcanivorax borkumensis SK2 3-hydroxyisobutyrate dehydrogenase YP_693223.1 1716109 D 393595 CDS YP_693224.1 110834365 4213134 complement(1717116..1718171) 1 NC_008260.1 (conserved hypothetical protein,; Family membership; hypothetical protein 1718171 4213134 ABO_1504 Alcanivorax borkumensis SK2 hypothetical protein YP_693224.1 1717116 R 393595 CDS YP_693225.1 110834366 4213135 1718388..1718795 1 NC_008260.1 identified by sequence similarity; hypothetical protein 1718795 4213135 ABO_1505 Alcanivorax borkumensis SK2 hypothetical protein YP_693225.1 1718388 D 393595 CDS YP_693226.1 110834367 4213136 1718786..1719493 1 NC_008260.1 hypothetical protein 1719493 4213136 ABO_1506 Alcanivorax borkumensis SK2 hypothetical protein YP_693226.1 1718786 D 393595 CDS YP_693227.1 110834368 4212474 1719593..1721782 1 NC_008260.1 Ferrichrome-iron receptor precursor (Ferric hydroxamate uptake) (Ferric hydroxamate receptor)., TonB-dependent siderophore receptor, TonB-dependent Receptor Plug Domain, TonB-siderophor: TonB-dependent siderophore receptor; High confidence in function and specificity; ferrichrome-iron receptor 1721782 fhuA 4212474 fhuA Alcanivorax borkumensis SK2 ferrichrome-iron receptor YP_693227.1 1719593 D 393595 CDS YP_693228.1 110834369 4213137 1721779..1723128 1 NC_008260.1 (membrane protein ) identified by sequence similarity; Family membership; iron-regulated membrane protein 1723128 4213137 ABO_1508 Alcanivorax borkumensis SK2 iron-regulated membrane protein YP_693228.1 1721779 D 393595 CDS YP_693229.1 110834370 4212767 complement(1723711..1725195) 1 NC_008260.1 Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 1725195 gltX 4212767 gltX Alcanivorax borkumensis SK2 glutamyl-tRNA synthetase YP_693229.1 1723711 R 393595 CDS YP_693230.1 110834371 4213138 1725457..1726086 1 NC_008260.1 hypothetical protein 1726086 4213138 ABO_1510 Alcanivorax borkumensis SK2 hypothetical protein YP_693230.1 1725457 D 393595 CDS YP_693231.1 110834372 4213766 complement(1726316..1727155) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00582 InterPro: Universal stress protein (Usp); Family membership; universal stress protein 1727155 4213766 ABO_1511 Alcanivorax borkumensis SK2 universal stress protein YP_693231.1 1726316 R 393595 CDS YP_693232.1 110834373 4213767 complement(1727200..1728681) 1 NC_008260.1 identified by match to PFAM protein family HMMPF04235 InterPro: Sulfate transporter; Family membership; sulfate permease 1728681 4213767 ABO_1512 Alcanivorax borkumensis SK2 sulfate permease YP_693232.1 1727200 R 393595 CDS YP_693233.1 110834374 4211574 1728980..1730026 1 NC_008260.1 identified by match to PFAM protein family HMMPF01207 InterPro: TIM-barrel protein yjbN family; Family membership; tRNA-dihydrouridine synthase A 1730026 yjbN 4211574 yjbN Alcanivorax borkumensis SK2 tRNA-dihydrouridine synthase A YP_693233.1 1728980 D 393595 CDS YP_693234.1 110834375 4211984 1730196..1731146 1 NC_008260.1 identified by sequence similarity; InterPro: Transaldolase; Family membership; transaldolase B 1731146 talB 4211984 talB Alcanivorax borkumensis SK2 transaldolase B YP_693234.1 1730196 D 393595 CDS YP_693235.1 110834376 4213768 1731143..1731586 1 NC_008260.1 hypothetical protein 1731586 4213768 ABO_1515 Alcanivorax borkumensis SK2 hypothetical protein YP_693235.1 1731143 D 393595 CDS YP_693236.1 110834377 4213769 complement(1731612..1732439) 1 NC_008260.1 (vacJ) (vacJ lipoprotein) VacJis attached to the outer membrane by a lipid anchor (by similarity); Function unclear; vacJ lipoprotein 1732439 4213769 ABO_1516 Alcanivorax borkumensis SK2 vacJ lipoprotein YP_693236.1 1731612 R 393595 CDS YP_693237.1 110834378 4213770 complement(1732555..1733325) 1 NC_008260.1 hypothetical protein 1733325 4213770 ABO_1517 Alcanivorax borkumensis SK2 hypothetical protein YP_693237.1 1732555 R 393595 CDS YP_693238.1 110834379 4213771 complement(1733322..1734221) 1 NC_008260.1 hypothetical protein 1734221 4213771 ABO_1518 Alcanivorax borkumensis SK2 hypothetical protein YP_693238.1 1733322 R 393595 CDS YP_693239.1 110834380 4213772 complement(1734234..1734545) 1 NC_008260.1 hypothetical protein 1734545 4213772 ABO_1519 Alcanivorax borkumensis SK2 hypothetical protein YP_693239.1 1734234 R 393595 CDS YP_693240.1 110834381 4213033 complement(1734701..1735831) 1 NC_008260.1 catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-ACP synthase 1735831 fabB 4213033 fabB Alcanivorax borkumensis SK2 3-oxoacyl-ACP synthase YP_693240.1 1734701 R 393595 CDS YP_693241.1 110834382 4211485 complement(1736037..1739987) 1 NC_008260.1 identified by sequence similarity; InterPro: DEAD/DEAH box helicase; Family membership; ATP-dependent helicase HrpA 1739987 hrpA 4211485 hrpA Alcanivorax borkumensis SK2 ATP-dependent helicase HrpA YP_693241.1 1736037 R 393595 CDS YP_693242.1 110834383 4213773 complement(1740108..1741931) 1 NC_008260.1 Family membership; hypothetical protein 1741931 4213773 ABO_1522 Alcanivorax borkumensis SK2 hypothetical protein YP_693242.1 1740108 R 393595 CDS YP_693243.1 110834384 4213774 1742447..1743373 1 NC_008260.1 (hydrolase alpha/beta fold family, ) identified by match to TIGR protein family HMMTIGR01738 InterPro: Esterase/lipase/thioesterase family active site; Family membership; alpha/beta hydrolase 1743373 4213774 ABO_1523 Alcanivorax borkumensis SK2 alpha/beta hydrolase YP_693243.1 1742447 D 393595 CDS YP_693244.1 110834385 4213775 complement(1743462..1743779) 1 NC_008260.1 hypothetical protein 1743779 4213775 ABO_1524 Alcanivorax borkumensis SK2 hypothetical protein YP_693244.1 1743462 R 393595 CDS YP_693245.1 110834386 4213776 complement(1743830..1745929) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Bacterial extracellular solute-binding proteins family 3; Family membership; ligand-binding/transglycosylase domain-containing protein 1745929 4213776 ABO_1525 Alcanivorax borkumensis SK2 ligand-binding/transglycosylase domain-containing protein YP_693245.1 1743830 R 393595 CDS YP_693246.1 110834387 4213777 complement(1746304..1747812) 1 NC_008260.1 hypothetical protein 1747812 4213777 ABO_1526 Alcanivorax borkumensis SK2 hypothetical protein YP_693246.1 1746304 R 393595 CDS YP_693247.1 110834388 4213778 complement(1747827..1748915) 1 NC_008260.1 InterPro: Bacterial outer membrane protein; Family membership; OmpA family protein 1748915 4213778 ABO_1527 Alcanivorax borkumensis SK2 OmpA family protein YP_693247.1 1747827 R 393595 CDS YP_693248.1 110834389 4213779 1749666..1750283 1 NC_008260.1 Hypothetical protein; hypothetical protein 1750283 4213779 ABO_1528 Alcanivorax borkumensis SK2 hypothetical protein YP_693248.1 1749666 D 393595 CDS YP_693249.1 110834390 4213780 1750332..1751483 1 NC_008260.1 (CAIB/BAIF family protein; CoA-transferase family protein) identified by match to PFAM protein family HMMPF02515 InterPro: CAIB/BAIF family; Family membership; CAIB/BAIF family protein 1751483 4213780 ABO_1529 Alcanivorax borkumensis SK2 CAIB/BAIF family protein YP_693249.1 1750332 D 393595 CDS YP_693250.1 110834391 4211372 1751583..1752209 1 NC_008260.1 (peptide methionine sulfoxide reductase) identified by match to PFAM protein family HMMPF01625 InterPro: Peptide methionine sulfoxide reductase; High confidence in function and specificity; methionine sulfoxide peptide reductase 1752209 msrA 4211372 msrA Alcanivorax borkumensis SK2 methionine sulfoxide peptide reductase YP_693250.1 1751583 D 393595 CDS YP_693251.1 110834392 4211374 1752235..1752660 1 NC_008260.1 this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1752660 msrb 4211374 msrb Alcanivorax borkumensis SK2 methionine sulfoxide reductase B YP_693251.1 1752235 D 393595 CDS YP_693252.1 110834393 4213781 complement(1753183..1754454) 1 NC_008260.1 (conserved hypothetical protein) identified by sequencesimilarity; hypothetical protein 1754454 4213781 ABO_1532 Alcanivorax borkumensis SK2 hypothetical protein YP_693252.1 1753183 R 393595 CDS YP_693253.1 110834394 4213782 complement(1754348..1755415) 1 NC_008260.1 transcriptional regulator AraC family identified by match to PFAM protein family HMMPF00165; Function unclear; AraC family transcriptional regulator 1755415 4213782 ABO_1533 Alcanivorax borkumensis SK2 AraC family transcriptional regulator YP_693253.1 1754348 R 393595 CDS YP_693254.1 110834395 4213783 1755628..1756059 1 NC_008260.1 hypothetical protein 1756059 4213783 ABO_1534 Alcanivorax borkumensis SK2 hypothetical protein YP_693254.1 1755628 D 393595 CDS YP_693255.1 110834396 4213784 1756148..1758808 1 NC_008260.1 (transport protein, ) identified by sequencesimilarity; InterPro: HMGCR/Patched 5TM box; Family membership; transporter 1758808 4213784 ABO_1535 Alcanivorax borkumensis SK2 transporter YP_693255.1 1756148 D 393595 CDS YP_693256.1 110834397 4213040 1759063..1760268 1 NC_008260.1 hypothetical protein 1760268 4213040 ABO_1536 Alcanivorax borkumensis SK2 hypothetical protein YP_693256.1 1759063 D 393595 CDS YP_693257.1 110834398 4212217 complement(1760621..1761406) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01668 InterPro: Haloacid dehalogenase/epoxide hydrolase family; Family membership; haloacid dehalogenase 1761406 dhlB 4212217 dhlB Alcanivorax borkumensis SK2 haloacid dehalogenase YP_693257.1 1760621 R 393595 CDS YP_693258.1 110834399 4213041 complement(1761575..1761820) 1 NC_008260.1 (; hypothetical protein 1761820 4213041 ABO_1538 Alcanivorax borkumensis SK2 hypothetical protein YP_693258.1 1761575 R 393595 CDS YP_693259.1 110834400 4213042 complement(1761932..1762684) 1 NC_008260.1 High confidence in function and specificity; hypothetical protein 1762684 4213042 ABO_1539 Alcanivorax borkumensis SK2 hypothetical protein YP_693259.1 1761932 R 393595 CDS YP_693260.1 110834401 4211563 complement(1763260..1764768) 1 NC_008260.1 (fumarate hydratase class I) identified by sequence similarity; InterPro: Fe-S type hydro-lyases tartrate/fumarate alpha region; High confidence in function and specificity; fumarate hydratase 1764768 fumA 4211563 fumA Alcanivorax borkumensis SK2 fumarate hydratase YP_693260.1 1763260 R 393595 CDS YP_693261.1 110834402 4213043 complement(1764895..1765773) 1 NC_008260.1 hydrolase alpha/beta fold family identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Family membership; hydrolase 1765773 4213043 ABO_1541 Alcanivorax borkumensis SK2 hydrolase YP_693261.1 1764895 R 393595 CDS YP_693262.1 110834403 4213044 complement(1765770..1766048) 1 NC_008260.1 hydrolase (acting on acid anhydrides in phosphorus-containing anhydrides) by match to PFAM protein family HMMPF03475 InterPro: Acylphosphatase; Family membership; hydrolase 1766048 4213044 ABO_1542 Alcanivorax borkumensis SK2 hydrolase YP_693262.1 1765770 R 393595 CDS YP_693263.1 110834404 4211651 complement(1766063..1767439) 1 NC_008260.1 (ribonuclease BN ) identified by match to PFAM protein family HMMPF03631; paralog of Abo_259 InterPro: Ribonuclease BN; Family membership; ribonuclease BN-like family protein 1767439 rbn-1 4211651 rbn-1 Alcanivorax borkumensis SK2 ribonuclease BN-like family protein YP_693263.1 1766063 R 393595 CDS YP_693264.1 110834405 4213831 1767444..1767797 1 NC_008260.1 identified by sequence similarity; Family membership; arsenate reductase 1767797 arsC 4213831 arsC Alcanivorax borkumensis SK2 arsenate reductase YP_693264.1 1767444 D 393595 CDS YP_693265.1 110834406 4211967 1767805..1768398 1 NC_008260.1 identified by sequence similarity; InterPro: Flavodoxin; Family membership; trp repressor binding protein 1768398 wrbA 4211967 wrbA Alcanivorax borkumensis SK2 trp repressor binding protein YP_693265.1 1767805 D 393595 CDS YP_693266.1 110834407 4213045 1768398..1768742 1 NC_008260.1 hypothetical protein 1768742 4213045 ABO_1546 Alcanivorax borkumensis SK2 hypothetical protein YP_693266.1 1768398 D 393595 CDS YP_693267.1 110834408 4213046 1768732..1769412 1 NC_008260.1 hypothetical protein 1769412 4213046 ABO_1547 Alcanivorax borkumensis SK2 hypothetical protein YP_693267.1 1768732 D 393595 CDS YP_693268.1 110834409 4213047 1769409..1770392 1 NC_008260.1 hypothetical protein 1770392 4213047 ABO_1548 Alcanivorax borkumensis SK2 hypothetical protein YP_693268.1 1769409 D 393595 CDS YP_693269.1 110834410 4213048 1770373..1771884 1 NC_008260.1 hypothetical protein 1771884 4213048 ABO_1549 Alcanivorax borkumensis SK2 hypothetical protein YP_693269.1 1770373 D 393595 CDS YP_693270.1 110834411 4213049 1771877..1773202 1 NC_008260.1 hypothetical protein 1773202 4213049 ABO_1550 Alcanivorax borkumensis SK2 hypothetical protein YP_693270.1 1771877 D 393595 CDS YP_693271.1 110834412 4213050 1773273..1774244 1 NC_008260.1 (ATPase, AAA protein family, ) identified by match to PFAM protein family HMMPF00004 InterPro: AAA ATPase superfamily; Family membership; ATPase AAA 1774244 4213050 ABO_1551 Alcanivorax borkumensis SK2 ATPase AAA YP_693271.1 1773273 D 393595 CDS YP_693272.1 110834413 4213051 1774241..1775548 1 NC_008260.1 identified by match to PFAM protein family HMMPF01882 InterPro: Protein of unknown function DUF58; hypothetical protein 1775548 4213051 ABO_1552 Alcanivorax borkumensis SK2 hypothetical protein YP_693272.1 1774241 D 393595 CDS YP_693273.1 110834414 4213052 complement(1775561..1776151) 1 NC_008260.1 Function unclear; hypothetical protein 1776151 4213052 ABO_1553 Alcanivorax borkumensis SK2 hypothetical protein YP_693273.1 1775561 R 393595 CDS YP_693274.1 110834415 4213053 1776184..1777566 1 NC_008260.1 (MATE efflux family protein, ) identified by match to PFAM protein family HMMPF01554 InterPro: Uncharacterized domain UPF0013; Family membership; MATE efflux family protein 1777566 4213053 ABO_1554 Alcanivorax borkumensis SK2 MATE efflux family protein YP_693274.1 1776184 D 393595 CDS YP_693275.1 110834416 4213054 1777671..1777961 1 NC_008260.1 hypothetical protein 1777961 4213054 ABO_1555 Alcanivorax borkumensis SK2 hypothetical protein YP_693275.1 1777671 D 393595 CDS YP_693276.1 110834417 4213055 1777958..1779580 1 NC_008260.1 identified by match to PFAM protein family HMMPF03977; Function unclear; hypothetical protein 1779580 4213055 ABO_1556 Alcanivorax borkumensis SK2 hypothetical protein YP_693276.1 1777958 D 393595 CDS YP_693277.1 110834418 4213056 1779577..1779927 1 NC_008260.1 hypothetical protein 1779927 4213056 ABO_1557 Alcanivorax borkumensis SK2 hypothetical protein YP_693277.1 1779577 D 393595 CDS YP_693278.1 110834419 4213057 complement(1779924..1780412) 1 NC_008260.1 hypothetical protein 1780412 4213057 ABO_1558 Alcanivorax borkumensis SK2 hypothetical protein YP_693278.1 1779924 R 393595 CDS YP_693279.1 110834420 4213058 1780839..1781525 1 NC_008260.1 hypothetical protein 1781525 4213058 ABO_1559 Alcanivorax borkumensis SK2 hypothetical protein YP_693279.1 1780839 D 393595 CDS YP_693280.1 110834421 4213059 complement(1781599..1781838) 1 NC_008260.1 conserved hypothetical protein identified by match to PFAM protein family HMMPF01206 InterPro: Uncharacterized protein family UPF0033; hypothetical protein 1781838 4213059 ABO_1560 Alcanivorax borkumensis SK2 hypothetical protein YP_693280.1 1781599 R 393595 CDS YP_693281.1 110834422 4213217 complement(1781838..1783097) 1 NC_008260.1 (transmembrane transport protein) identified by match to PFAM protein family HMMPF04284, Family membership; transmembrane transport protein 1783097 4213217 ABO_1561 Alcanivorax borkumensis SK2 transmembrane transport protein YP_693281.1 1781838 R 393595 CDS YP_693282.1 110834423 4213218 complement(1783100..1784161) 1 NC_008260.1 identified by sequencesimilarity; RNA 2'-O-ribose methyltransferase 1784161 4213218 ABO_1562 Alcanivorax borkumensis SK2 RNA 2'-O-ribose methyltransferase YP_693282.1 1783100 R 393595 CDS YP_693283.1 110834424 4211152 complement(1784503..1785375) 1 NC_008260.1 produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 1785375 purU 4211152 purU Alcanivorax borkumensis SK2 formyltetrahydrofolate deformylase YP_693283.1 1784503 R 393595 CDS YP_693284.1 110834425 4213219 complement(1785423..1786442) 1 NC_008260.1 transcriptional regulator AraC family identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; Function unclear; AraC family transcriptional regulator 1786442 4213219 ABO_1564 Alcanivorax borkumensis SK2 AraC family transcriptional regulator YP_693284.1 1785423 R 393595 CDS YP_693285.1 110834426 4211627 1786690..1787085 1 NC_008260.1 identified by sequencesimilarity; InterPro: Response regulator receiver domain; Family membership; DNA-binding response regulator OmpR 1787085 ompR 4211627 ompR Alcanivorax borkumensis SK2 DNA-binding response regulator OmpR YP_693285.1 1786690 D 393595 CDS YP_693286.1 110834427 4211860 complement(1787227..1789392) 1 NC_008260.1 (fatty oxidation complex alpha subunit, enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase) identified by sequence similarity; InterPro: enoyl-CoA hydratase / 3-hydroxyacyl-CoA dehydrogenase / 3-hydroxybutyryl-CoA epimerase; Family membership; fatty oxidation complex subunit alpha 1789392 fadB 4211860 fadB Alcanivorax borkumensis SK2 fatty oxidation complex subunit alpha YP_693286.1 1787227 R 393595 CDS YP_693287.1 110834428 4211854 complement(1789422..1790633) 1 NC_008260.1 (Acetyl CoA acetyltransferase) identified by sequence similarity; InterPro: Thiolase; High confidence in function and specificity; acetyl CoA acetyltransferase 1790633 fadA 4211854 fadA Alcanivorax borkumensis SK2 acetyl CoA acetyltransferase YP_693287.1 1789422 R 393595 CDS YP_693288.1 110834429 4213220 1790878..1791633 1 NC_008260.1 hypothetical protein 1791633 4213220 ABO_1568 Alcanivorax borkumensis SK2 hypothetical protein YP_693288.1 1790878 D 393595 CDS YP_693289.1 110834430 4213221 1792484..1793074 1 NC_008260.1 Smr domain protein identified by match to PFAM protein family HMMPF01713 InterPro: Smr domain; Function unclear; Smr domain-containing protein 1793074 4213221 ABO_1569 Alcanivorax borkumensis SK2 Smr domain-containing protein YP_693289.1 1792484 D 393595 CDS YP_693290.1 110834431 4211971 complement(1793210..1794607) 1 NC_008260.1 catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 1794607 sth 4211971 sth Alcanivorax borkumensis SK2 soluble pyridine nucleotide transhydrogenase YP_693290.1 1793210 R 393595 CDS YP_693291.1 110834432 4213222 complement(1794933..1795670) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00308; hypothetical protein 1795670 4213222 ABO_1571 Alcanivorax borkumensis SK2 hypothetical protein YP_693291.1 1794933 R 393595 CDS YP_693292.1 110834433 4213223 complement(1795627..1796496) 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 1796496 4213223 ABO_1572 Alcanivorax borkumensis SK2 hypothetical protein YP_693292.1 1795627 R 393595 CDS YP_693293.1 110834434 4211149 1796855..1797898 1 NC_008260.1 identified by sequencesimilarity; InterPro: Phosphoribosylformylglycinamidine cyclo-ligase; High confidence in function and specificity; phosphoribosylformylglycinamidine cyclo-ligase 1797898 purM 4211149 purM Alcanivorax borkumensis SK2 phosphoribosylformylglycinamidine cyclo-ligase YP_693293.1 1796855 D 393595 CDS YP_693294.1 110834435 4211150 1797895..1798536 1 NC_008260.1 identified by sequence similarity; InterPro: Phosphoribosylglycinamide formyltransferase; High confidence in function and specificity; phosphoribosylglycinamide formyltransferase 1798536 purN 4211150 purN Alcanivorax borkumensis SK2 phosphoribosylglycinamide formyltransferase YP_693294.1 1797895 D 393595 CDS YP_693295.1 110834436 4213224 1798496..1799233 1 NC_008260.1 hypothetical protein 1799233 4213224 ABO_1575 Alcanivorax borkumensis SK2 hypothetical protein YP_693295.1 1798496 D 393595 CDS YP_693296.1 110834437 4213225 1799236..1799955 1 NC_008260.1 hypothetical protein 1799955 4213225 ABO_1576 Alcanivorax borkumensis SK2 hypothetical protein YP_693296.1 1799236 D 393595 CDS YP_693297.1 110834438 4213294 complement(1799952..1800521) 1 NC_008260.1 Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1800521 dcd 4213294 dcd Alcanivorax borkumensis SK2 deoxycytidine triphosphate deaminase YP_693297.1 1799952 R 393595 CDS YP_693298.1 110834439 4211370 complement(1800718..1801827) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Mrp family; Family membership; ATP-binding Mrp/Nbp35 family protein 1801827 mrp 4211370 mrp Alcanivorax borkumensis SK2 ATP-binding Mrp/Nbp35 family protein YP_693298.1 1800718 R 393595 CDS YP_693299.1 110834440 4213226 1802004..1802699 1 NC_008260.1 (eno) identified by sequencesimilarity; Hypothetical protein; enolase 1802699 4213226 ABO_1579 Alcanivorax borkumensis SK2 enolase YP_693299.1 1802004 D 393595 CDS YP_693300.1 110834441 4213227 1802712..1803749 1 NC_008260.1 transcriptional regulator AraC family) identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; Function unclear; AraC family transcriptional regulator 1803749 4213227 ABO_1580 Alcanivorax borkumensis SK2 AraC family transcriptional regulator YP_693300.1 1802712 D 393595 CDS YP_693301.1 110834442 4213228 1803868..1805337 1 NC_008260.1 identified by match to PFAM protein family HMMPF01734; hypothetical protein 1805337 4213228 ABO_1581 Alcanivorax borkumensis SK2 hypothetical protein YP_693301.1 1803868 D 393595 CDS YP_693302.1 110834443 4213229 complement(1805602..1806888) 1 NC_008260.1 involved in uv protection and mutation. InterPro: UMUC family (DNA-repair) Pfam: impB/mucB/samB family; Family membership; DNA-damage-inducible protein 1806888 4213229 ABO_1582 Alcanivorax borkumensis SK2 DNA-damage-inducible protein YP_693302.1 1805602 R 393595 CDS YP_693303.1 110834444 4211544 complement(1806894..1807385) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Peptidase family S24; Family membership; LexA repressor 1807385 lexA-2 4211544 lexA-2 Alcanivorax borkumensis SK2 LexA repressor YP_693303.1 1806894 R 393595 CDS YP_693304.1 110834445 4213230 1807503..1807799 1 NC_008260.1 hypothetical protein 1807799 4213230 ABO_1584 Alcanivorax borkumensis SK2 hypothetical protein YP_693304.1 1807503 D 393595 CDS YP_693305.1 110834446 4213231 1808166..1809149 1 NC_008260.1 oxidoreductase identified by sequence similarity; Family membership; oxidoreductase 1809149 4213231 ABO_1585 Alcanivorax borkumensis SK2 oxidoreductase YP_693305.1 1808166 D 393595 CDS YP_693306.1 110834447 4213232 complement(1809166..1810143) 1 NC_008260.1 identified by match to PFAM protein family HMMPF03602 InterPro: SAM (and some other nucleotide) binding motif; hypothetical protein 1810143 4213232 ABO_1586 Alcanivorax borkumensis SK2 hypothetical protein YP_693306.1 1809166 R 393595 CDS YP_693307.1 110834448 4213233 1810338..1812281 1 NC_008260.1 identified by sequencesimilarity; InterPro: SLT domain murein-degrading enzyme; High confidence in function and specificity; lytic transglycosylase 1812281 4213233 ABO_1587 Alcanivorax borkumensis SK2 lytic transglycosylase YP_693307.1 1810338 D 393595 CDS YP_693308.1 110834449 4213234 complement(1812295..1813041) 1 NC_008260.1 (conserved hypothetical protein, contains spermidine synthase domain) identified by sequence similarity; hypothetical protein 1813041 4213234 ABO_1588 Alcanivorax borkumensis SK2 hypothetical protein YP_693308.1 1812295 R 393595 CDS YP_693309.1 110834450 4213235 complement(1813045..1815978) 1 NC_008260.1 hypothetical protein 1815978 4213235 ABO_1589 Alcanivorax borkumensis SK2 hypothetical protein YP_693309.1 1813045 R 393595 CDS YP_693310.1 110834451 4213549 1816109..1816576 1 NC_008260.1 hypothetical protein 1816576 4213549 ABO_1590 Alcanivorax borkumensis SK2 hypothetical protein YP_693310.1 1816109 D 393595 CDS YP_693311.1 110834452 4213550 complement(1816698..1817384) 1 NC_008260.1 (alpha/beta-hydrolase protein family, ) identified by sequence similarity; InterPro: Esterase/lipase/thioesterase family active site; Family membership; alpha/beta hydrolase 1817384 4213550 ABO_1591 Alcanivorax borkumensis SK2 alpha/beta hydrolase YP_693311.1 1816698 R 393595 CDS YP_693312.1 110834453 4213551 complement(1817400..1818017) 1 NC_008260.1 (ttgR) (transcriptional regulator TtgR) identifiedby sequence similarity; InterPro: Bacterial regulatory proteins TetR family; Family membership; TetR family transcriptional regulator 1818017 4213551 ABO_1592 Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_693312.1 1817400 R 393595 CDS YP_693313.1 110834454 4213552 complement(1818014..1818274) 1 NC_008260.1 hypothetical protein 1818274 4213552 ABO_1593 Alcanivorax borkumensis SK2 hypothetical protein YP_693313.1 1818014 R 393595 CDS YP_693314.1 110834455 4213553 complement(1818433..1819485) 1 NC_008260.1 identified by match to PFAM protein family HMMPF04055 InterPro: Domain of unknown function DUF85; hypothetical protein 1819485 4213553 ABO_1594 Alcanivorax borkumensis SK2 hypothetical protein YP_693314.1 1818433 R 393595 CDS YP_693315.1 110834456 4213554 complement(1819568..1824409) 1 NC_008260.1 Region start changed from 1824508 to 1824409 (-99 bases); NAD-glutamate dehydrogenase 1824409 4213554 ABO_1595 Alcanivorax borkumensis SK2 NAD-glutamate dehydrogenase YP_693315.1 1819568 R 393595 CDS YP_693316.1 110834457 4213555 complement(1824759..1825073) 1 NC_008260.1 identified by Glimmer2; hypothetical protein 1825073 4213555 ABO_1596 Alcanivorax borkumensis SK2 hypothetical protein YP_693316.1 1824759 R 393595 CDS YP_693317.1 110834458 4213556 complement(1825334..1826743) 1 NC_008260.1 hypothetical protein 1826743 4213556 ABO_1597 Alcanivorax borkumensis SK2 hypothetical protein YP_693317.1 1825334 R 393595 CDS YP_693318.1 110834459 4213557 1826804..1829632 1 NC_008260.1 sensor histidine kinase identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Function unclear; sensor histidine kinase/response regulator 1829632 4213557 ABO_1598 Alcanivorax borkumensis SK2 sensor histidine kinase/response regulator YP_693318.1 1826804 D 393595 CDS YP_693319.1 110834460 4211503 1829835..1831895 1 NC_008260.1 Methionine-tRNA ligase activity; High confidence in function and specificity; methionyl-tRNA synthetase 1831895 metG 4211503 metG Alcanivorax borkumensis SK2 methionyl-tRNA synthetase YP_693319.1 1829835 D 393595 CDS YP_693320.1 110834461 4213472 complement(1832098..1832790) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Cyclic nucleotide-binding domain; Family membership; transcriptional regulator Anr 1832790 anr 4213472 anr Alcanivorax borkumensis SK2 transcriptional regulator Anr YP_693320.1 1832098 R 393595 CDS YP_693321.1 110834462 4213558 1832918..1833703 1 NC_008260.1 deleted EC_number 4.1.2.1; (aldolase, ) identified by match to TIGR protein family HMMTIGR01086, InterPro: Class II Aldolase and Adducin N-terminal domain; Family membership; aldolase 1833703 4213558 ABO_1601 Alcanivorax borkumensis SK2 aldolase YP_693321.1 1832918 D 393595 CDS YP_693322.1 110834463 4213559 1833714..1834310 1 NC_008260.1 (phosphohydrolase, HD domain protein family, ) identified by match to PFAM protein family HMMPF03466; Family membership; phosphohydrolase family protein 1834310 4213559 ABO_1602 Alcanivorax borkumensis SK2 phosphohydrolase family protein YP_693322.1 1833714 D 393595 CDS YP_693323.1 110834464 4213560 1834578..1835933 1 NC_008260.1 hypothetical protein 1835933 4213560 ABO_1603 Alcanivorax borkumensis SK2 hypothetical protein YP_693323.1 1834578 D 393595 CDS YP_693324.1 110834465 4213561 complement(1836238..1837185) 1 NC_008260.1 hypothetical protein 1837185 4213561 ABO_1604 Alcanivorax borkumensis SK2 hypothetical protein YP_693324.1 1836238 R 393595 CDS YP_693325.1 110834466 4213562 complement(1837301..1837990) 1 NC_008260.1 hypothetical protein 1837990 4213562 ABO_1605 Alcanivorax borkumensis SK2 hypothetical protein YP_693325.1 1837301 R 393595 CDS YP_693326.1 110834467 4213563 complement(1838093..1838806) 1 NC_008260.1 identified by sequence similarity; hypothetical protein 1838806 4213563 ABO_1606 Alcanivorax borkumensis SK2 hypothetical protein YP_693326.1 1838093 R 393595 CDS YP_693327.1 110834468 4213564 complement(1839738..1840388) 1 NC_008260.1 hypothetical protein 1840388 4213564 ABO_1607 Alcanivorax borkumensis SK2 hypothetical protein YP_693327.1 1839738 R 393595 CDS YP_693328.1 110834469 4213565 complement(1840471..1841598) 1 NC_008260.1 SPT; serine-pyruvate transaminase; serine-pyruvate aminotransferase; identified by sequencesimilarity; High confidence in function and specificity; serine-pyruvate transaminase; SPT 1841598 4213565 ABO_1608 Alcanivorax borkumensis SK2 serine-pyruvate transaminase; SPT YP_693328.1 1840471 R 393595 CDS YP_693329.1 110834470 4212121 1841881..1842465 1 NC_008260.1 RnfA -related membrane protein identified by sequence similarity; High confidence in function and specificity; electron transport complex protein RnfA 1842465 rnfA 4212121 rnfA Alcanivorax borkumensis SK2 electron transport complex protein RnfA YP_693329.1 1841881 D 393595 CDS YP_693330.1 110834471 4212122 1842462..1843046 1 NC_008260.1 identified by sequence similarity; InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain cofactor binds 1 2fe-2s and 2 4fe-4s clusters (potential) belongs to the 4fe4s bacterial-type ferredoxin family. rnfb subfamily; High confidence in function and specificity; electron transport complex protein RnfB 1843046 rnfB 4212122 rnfB Alcanivorax borkumensis SK2 electron transport complex protein RnfB YP_693330.1 1842462 D 393595 CDS YP_693331.1 110834472 4212123 1843129..1846104 1 NC_008260.1 (NADH dehydrogenase I F subunit) identified by sequence similarity; InterPro: Respiratory-chain NADH dehydrogenase 51 Kd subunit; High confidence in function and specificity; electron transport complex protein RnfC 1846104 rnfC 4212123 rnfC Alcanivorax borkumensis SK2 electron transport complex protein RnfC YP_693331.1 1843129 D 393595 CDS YP_693332.1 110834473 4212124 1846223..1847251 1 NC_008260.1 identified by match to PFAM protein family HMMPF03116; Family membership; electron transport complex protein RnfD 1847251 rnfD 4212124 rnfD Alcanivorax borkumensis SK2 electron transport complex protein RnfD YP_693332.1 1846223 D 393595 CDS YP_693333.1 110834474 4212165 1847251..1847898 1 NC_008260.1 electron transport complex protein rnfg belongs to the rnfg family; Family membership; electron complex protein rnfG 1847898 rnfG 4212165 rnfG Alcanivorax borkumensis SK2 electron complex protein rnfG YP_693333.1 1847251 D 393595 CDS YP_693334.1 110834475 4212125 1847888..1848604 1 NC_008260.1 in Excherichia coli RsxABCDEG reduces SoxR which turns off induction of SoxS transcription factor in the absence of oxidizing agents; similar to the rnfABCDGE operon in Rhodobacter capsulatus involved in transferring electrons to nitrogenase; electron transport complex protein RsxE 1848604 rnfE 4212125 rnfE Alcanivorax borkumensis SK2 electron transport complex protein RsxE YP_693334.1 1847888 D 393595 CDS YP_693335.1 110834476 4213566 1848895..1849425 1 NC_008260.1 hypothetical protein (conserved hypothetical protein) identified by sequencesimilarity; hypothetical protein 1849425 4213566 ABO_1615 Alcanivorax borkumensis SK2 hypothetical protein YP_693335.1 1848895 D 393595 CDS YP_693336.1 110834477 4212765 complement(1849510..1850694) 1 NC_008260.1 (sodium/glutamate symport carrier protein, sodium-glutamate symporter, glutamate permease) identified by sequence similarity; identified by match to PFAM protein family HMMPF03616 and TIGRFAM protein family HMMTIGR00210 InterPro: Sodium/glutamate symporter; High confidence in function and specificity; sodium/glutamate symport carrier protein 1850694 gltS 4212765 gltS Alcanivorax borkumensis SK2 sodium/glutamate symport carrier protein YP_693336.1 1849510 R 393595 CDS YP_693337.1 110834478 4211673 1850810..1851448 1 NC_008260.1 (endonuclease III),(DNA-(apurinic or apyrimidinic site)lyase)identified by match to PFAM protein family HMMPF00730 InterPro: HhH-GPD; High confidence in function and specificity; DNA-(apurinic or apyrimidinic site) lyase 1851448 nth 4211673 nth Alcanivorax borkumensis SK2 DNA-(apurinic or apyrimidinic site) lyase YP_693337.1 1850810 D 393595 CDS YP_693338.1 110834479 4213567 complement(1851576..1852319) 1 NC_008260.1 dienelactone hydrolase family protein identified by sequence similarity; InterPro: Dienelactone hydrolase; Family membership; dienelactone hydrolase family protein 1852319 4213567 ABO_1618 Alcanivorax borkumensis SK2 dienelactone hydrolase family protein YP_693338.1 1851576 R 393595 CDS YP_693339.1 110834480 4213568 complement(1852454..1852975) 1 NC_008260.1 (conserved hypothetical protein TIGR00257) identified by match to TIGR protein family HMMTIGR00257; hypothetical protein 1852975 4213568 ABO_1619 Alcanivorax borkumensis SK2 hypothetical protein YP_693339.1 1852454 R 393595 CDS YP_693340.1 110834481 4213785 1853026..1853400 1 NC_008260.1 hypothetical protein 1853400 4213785 ABO_1620 Alcanivorax borkumensis SK2 hypothetical protein YP_693340.1 1853026 D 393595 CDS YP_693341.1 110834482 4213786 complement(1853566..1854585) 1 NC_008260.1 High confidence in function and specificity; porin 1854585 4213786 ABO_1621 Alcanivorax borkumensis SK2 porin YP_693341.1 1853566 R 393595 CDS YP_693342.1 110834483 4213787 complement(1854762..1855538) 1 NC_008260.1 (MazG nucleotide pyrophosphohydrolase domain family protein) identified by match to TIGR protein family HMMTIGR00444 InterPro: MazG family protein; Function unclear; nucleotide pyrophosphohydrolase 1855538 4213787 ABO_1622 Alcanivorax borkumensis SK2 nucleotide pyrophosphohydrolase YP_693342.1 1854762 R 393595 CDS YP_693343.1 110834484 4212037 complement(1855551..1857791) 1 NC_008260.1 (GTP pyrophosphokinase) identified by match to PFAM protein family HMMPF02824 InterPro: RelA/SpoT family protein; High confidence in function and specificity; GTP pyrophosphokinase 1857791 relA 4212037 relA Alcanivorax borkumensis SK2 GTP pyrophosphokinase YP_693343.1 1855551 R 393595 CDS YP_693344.1 110834485 4212636 complement(1857803..1859140) 1 NC_008260.1 Identified by match to PFAM protein family HMMPF03602.; Conserved hypothetical protein; RNA methyltransferase 1859140 ruma 4212636 ruma Alcanivorax borkumensis SK2 RNA methyltransferase YP_693344.1 1857803 R 393595 CDS YP_693345.1 110834486 4213788 complement(1859263..1860045) 1 NC_008260.1 (oprB-2) (porin B) identified by sequencesimilarity; hypothetical protein 1860045 4213788 ABO_1625 Alcanivorax borkumensis SK2 hypothetical protein YP_693345.1 1859263 R 393595 CDS YP_693346.1 110834487 4212580 complement(1860042..1860956) 1 NC_008260.1 catalyzes the formation of cysteine from 3-O-acetyl-L-serine and hydrogen sulfide; cysteine synthase B 1860956 cysM 4212580 cysM Alcanivorax borkumensis SK2 cysteine synthase B YP_693346.1 1860042 R 393595 CDS YP_693347.1 110834488 4211568 1861125..1863917 1 NC_008260.1 (sensor histidine kinase/response regulator GacS) identified by sequence similarity; InterPro: Histidine kinase C-terminal; Family membership; sensor/response regulator hybrid 1863917 gacS 4211568 gacS Alcanivorax borkumensis SK2 sensor/response regulator hybrid YP_693347.1 1861125 D 393595 CDS YP_693348.1 110834489 4212451 complement(1863951..1864685) 1 NC_008260.1 involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1864685 pdxJ 4212451 pdxJ Alcanivorax borkumensis SK2 pyridoxine 5'-phosphate synthase YP_693348.1 1863951 R 393595 CDS YP_693349.1 110834490 4212031 complement(1864773..1865450) 1 NC_008260.1 identified by match to PFAM protein family HMMPF02565; High confidence in function and specificity; DNA repair protein RecO 1865450 recO 4212031 recO Alcanivorax borkumensis SK2 DNA repair protein RecO YP_693349.1 1864773 R 393595 CDS YP_693350.1 110834491 4213352 complement(1865593..1866525) 1 NC_008260.1 identified by sequence similarity; InterPro: Type 2 KH domain; Family membership; GTP-binding protein Era 1866525 era 4213352 era Alcanivorax borkumensis SK2 GTP-binding protein Era YP_693350.1 1865593 R 393595 CDS YP_693351.1 110834492 4212118 complement(1866518..1867204) 1 NC_008260.1 identified by sequence similarity; InterPro: Ribonuclease III family; High confidence in function and specificity; ribonuclease III 1867204 rnc 4212118 rnc Alcanivorax borkumensis SK2 ribonuclease III YP_693351.1 1866518 R 393595 CDS YP_693352.1 110834493 4213789 complement(1867201..1867584) 1 NC_008260.1 hypothetical protein 1867584 4213789 ABO_1632 Alcanivorax borkumensis SK2 hypothetical protein YP_693352.1 1867201 R 393595 CDS YP_693353.1 110834494 4211536 complement(1867571..1868377) 1 NC_008260.1 (signal peptidase I) identified by sequence similarity; InterPro: Signal peptidase; High confidence in function and specificity; signal peptidase I; leader peptidase I 1868377 lepB 4211536 lepB Alcanivorax borkumensis SK2 signal peptidase I; leader peptidase I YP_693353.1 1867571 R 393595 CDS YP_693354.1 110834495 4211535 complement(1868466..1870265) 1 NC_008260.1 binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1870265 lepA 4211535 lepA Alcanivorax borkumensis SK2 GTP-binding protein LepA YP_693354.1 1868466 R 393595 CDS YP_693355.1 110834496 4213393 complement(1870495..1871946) 1 NC_008260.1 alginate biosynthesis negative regulator serine protease AlgW, identified by sequence similarity; InterPro: Serine proteases trypsin family; High confidence in function and specificity; alginate biosynthesis negative regulator, serine protease 1871946 algW 4213393 algW Alcanivorax borkumensis SK2 alginate biosynthesis negative regulator, serine protease YP_693355.1 1870495 R 393595 CDS YP_693356.1 110834497 4213602 complement(1871987..1872457) 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; protein AlgM 1872457 algM 4213602 algM Alcanivorax borkumensis SK2 protein AlgM YP_693356.1 1871987 R 393595 CDS YP_693357.1 110834498 4213603 complement(1872457..1873437) 1 NC_008260.1 (sigma factor algU regulatory protein AlgN) identified by match to PFAM protein family HMMPF03888; High confidence in function and specificity; negative regulator for alginate biosynthesis 1873437 algN 4213603 algN Alcanivorax borkumensis SK2 negative regulator for alginate biosynthesis YP_693357.1 1872457 R 393595 CDS YP_693358.1 110834499 4213606 complement(1873441..1874025) 1 NC_008260.1 identified by match to PFAM protein family HMMPF03872 RseA_N; High confidence in function and specificity; sigma factor algU negative regulatory protein AlgS 1874025 algS 4213606 algS Alcanivorax borkumensis SK2 sigma factor algU negative regulatory protein AlgS YP_693358.1 1873441 R 393595 CDS YP_693359.1 110834500 4213607 complement(1874030..1874614) 1 NC_008260.1 Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE 1874614 algU 4213607 algU Alcanivorax borkumensis SK2 RNA polymerase sigma factor RpoE YP_693359.1 1874030 R 393595 CDS YP_693360.1 110834501 4213790 complement(1874943..1876217) 1 NC_008260.1 hypothetical protein 1876217 4213790 ABO_1640 Alcanivorax borkumensis SK2 hypothetical protein YP_693360.1 1874943 R 393595 CDS YP_693361.1 110834502 4211254 1876484..1878091 1 NC_008260.1 identified by sequencesimilarity; InterPro: Fumarate reductase/succinate dehydrogenase flavoprotein N-terminal; High confidence in function and specificity; L-aspartate oxidase 1878091 nadB 4211254 nadB Alcanivorax borkumensis SK2 L-aspartate oxidase YP_693361.1 1876484 D 393595 CDS YP_693362.1 110834503 4213791 complement(1878234..1878557) 1 NC_008260.1 hypothetical protein 1878557 4213791 ABO_1642 Alcanivorax borkumensis SK2 hypothetical protein YP_693362.1 1878234 R 393595 CDS YP_693363.1 110834504 4213792 complement(1878595..1878855) 1 NC_008260.1 identified by match to PFAM protein family HMMPF03937; hypothetical protein 1878855 4213792 ABO_1643 Alcanivorax borkumensis SK2 hypothetical protein YP_693363.1 1878595 R 393595 CDS YP_693364.1 110834505 4213793 1879006..1879953 1 NC_008260.1 Family membership; hypothetical protein 1879953 4213793 ABO_1644 Alcanivorax borkumensis SK2 hypothetical protein YP_693364.1 1879006 D 393595 CDS YP_693365.1 110834506 4211862 complement(1880059..1881174) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00378 InterPro: Enoyl-CoA hydratase/isomerase; High confidence in function and specificity; enoyl-CoA hydratase 1881174 fadC 4211862 fadC Alcanivorax borkumensis SK2 enoyl-CoA hydratase YP_693365.1 1880059 R 393595 CDS YP_693366.1 110834507 4211727 complement(1881452..1882165) 1 NC_008260.1 identified by match to PFAM protein family HMMPF03167; High confidence in function and specificity; uracil-DNA glycosylase 1882165 ung 4211727 ung Alcanivorax borkumensis SK2 uracil-DNA glycosylase YP_693366.1 1881452 R 393595 CDS YP_693367.1 110834508 4213794 complement(1882158..1882826) 1 NC_008260.1 transcriptional regulator TetR family identified by match to PFAM protein family HMMPF00440; Family membership; TetR family transcriptional regulator 1882826 4213794 ABO_1647 Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_693367.1 1882158 R 393595 CDS YP_693368.1 110834509 4211492 complement(1882927..1884441) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Lysyl-tRNA synthetase class-2; High confidence in function and specificity; lysyl-tRNA synthetase 1884441 lysS 4211492 lysS Alcanivorax borkumensis SK2 lysyl-tRNA synthetase YP_693368.1 1882927 R 393595 CDS YP_693369.1 110834510 4212277 complement(1884541..1885611) 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; peptide chain release factor 1 1885611 prfA 4212277 prfA Alcanivorax borkumensis SK2 peptide chain release factor 1 YP_693369.1 1884541 R 393595 CDS YP_693370.1 110834511 4213795 complement(1885969..1886253) 1 NC_008260.1 hypothetical protein 1886253 4213795 ABO_1650 Alcanivorax borkumensis SK2 hypothetical protein YP_693370.1 1885969 R 393595 CDS YP_693371.1 110834512 4212029 complement(1886605..1888329) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Single-stranded-DNA-specific exonuclease RecJ; High confidence in function and specificity; single-stranded-DNA-specific exonuclease RecJ 1888329 recJ 4212029 recJ Alcanivorax borkumensis SK2 single-stranded-DNA-specific exonuclease RecJ YP_693371.1 1886605 R 393595 CDS YP_693372.1 110834513 4211861 1888793..1890940 1 NC_008260.1 includes enoyl-CoA hydratase, delta(3)-cis-delta(2)-trans-enoyl-CoA isomerase, 3-hydroxyacyl-CoA dehydrogenase, and 3-hydroxybutyryl-CoA epimerase; catalyzes the formation of an hydroxyacyl-CoA by addition of water on enoyl-CoA; also exhibits 3-hydroxyacyl-CoA epimerase and 3-hydroxyacyl-CoA dehydrogenase activities; forms a heterotetramer with FadA; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; multifunctional fatty acid oxidation complex subunit alpha 1890940 fadB 4211861 fadB Alcanivorax borkumensis SK2 multifunctional fatty acid oxidation complex subunit alpha YP_693372.1 1888793 D 393595 CDS YP_693373.1 110834514 4211856 1890966..1892141 1 NC_008260.1 FadA; fatty acid oxidation complex component beta; functions in a heterotetramer with FadB; similar to FadI2J2 complex; functions in beta-oxidation of fatty acids; 3-ketoacyl-CoA thiolase 1892141 fadA 4211856 fadA Alcanivorax borkumensis SK2 3-ketoacyl-CoA thiolase YP_693373.1 1890966 D 393595 CDS YP_693374.1 110834515 4213796 1892423..1893154 1 NC_008260.1 hypothetical protein 1893154 4213796 ABO_1654 Alcanivorax borkumensis SK2 hypothetical protein YP_693374.1 1892423 D 393595 CDS YP_693375.1 110834516 4213797 complement(1893401..1894279) 1 NC_008260.1 hypothetical protein 1894279 4213797 ABO_1655 Alcanivorax borkumensis SK2 hypothetical protein YP_693375.1 1893401 R 393595 CDS YP_693376.1 110834517 4213798 complement(1894733..1894924) 1 NC_008260.1 hypothetical protein 1894924 4213798 ABO_1656 Alcanivorax borkumensis SK2 hypothetical protein YP_693376.1 1894733 R 393595 CDS YP_693377.1 110834518 4213799 1895602..1896726 1 NC_008260.1 hypothetical protein 1896726 4213799 ABO_1657 Alcanivorax borkumensis SK2 hypothetical protein YP_693377.1 1895602 D 393595 CDS YP_693378.1 110834519 4213800 1896719..1897672 1 NC_008260.1 Hypothetical protein; hypothetical protein 1897672 4213800 ABO_1658 Alcanivorax borkumensis SK2 hypothetical protein YP_693378.1 1896719 D 393595 CDS YP_693379.1 110834520 4211413 complement(1897676..1898602) 1 NC_008260.1 DNA-cytosine methyltransferase identified by sequence similarity; InterPro: C-5 cytosine-specific DNA methylase; Specificity unclear; C-5 cytosine-specific DNA methylase family protein 1898602 dsm 4211413 dsm Alcanivorax borkumensis SK2 C-5 cytosine-specific DNA methylase family protein YP_693379.1 1897676 R 393595 CDS YP_693380.1 110834521 4213801 complement(1898991..1899701) 1 NC_008260.1 (topA) (DNA topoisomerase I) identified by match to PFAM protein family HMMPF01131 InterPro: Prokaryotic DNA topoisomerase I; hypothetical protein 1899701 4213801 ABO_1660 Alcanivorax borkumensis SK2 hypothetical protein YP_693380.1 1898991 R 393595 CDS YP_693381.1 110834522 4213802 complement(1899996..1900298) 1 NC_008260.1 conserved hypothetical protein identified by Glimmer2; hypothetical protein 1900298 4213802 ABO_1661 Alcanivorax borkumensis SK2 hypothetical protein YP_693381.1 1899996 R 393595 CDS YP_693382.1 110834523 4212961 complement(1900301..1901239) 1 NC_008260.1 curved-DNA-binding protein DnaJ family identified by sequence similarity; InterPro: DnaJ C terminal domain; High confidence in function and specificity; DnaJ family curved-DNA-binding protein 1901239 cbpA 4212961 cbpA Alcanivorax borkumensis SK2 DnaJ family curved-DNA-binding protein YP_693382.1 1900301 R 393595 CDS YP_693383.1 110834524 4213803 complement(1901442..1903283) 1 NC_008260.1 activates fatty acids by binding to coenzyme A; may be involved in acyclic terpene utilization; long-chain-acyl-CoA synthetase 1903283 4213803 ABO_1663 Alcanivorax borkumensis SK2 long-chain-acyl-CoA synthetase YP_693383.1 1901442 R 393595 CDS YP_693384.1 110834525 4211295 1903663..1904082 1 NC_008260.1 (CBS domain protein, ) identified by sequence similarity InterPro: CBS domain; Family membership; hypothetical protein 1904082 4211295 ABO_1664 Alcanivorax borkumensis SK2 hypothetical protein YP_693384.1 1903663 D 393595 CDS YP_693385.1 110834526 4211296 complement(1904538..1906433) 1 NC_008260.1 (helicase ) identified by match to PFAM protein family HMMPF00580; Hypothetical protein; hypothetical protein 1906433 4211296 ABO_1665 Alcanivorax borkumensis SK2 hypothetical protein YP_693385.1 1904538 R 393595 CDS YP_693386.1 110834527 4211297 complement(1906439..1907020) 1 NC_008260.1 Conserved hypothetical protein; DNA/RNA helicase domain-containing protein 1907020 4211297 ABO_1666 Alcanivorax borkumensis SK2 DNA/RNA helicase domain-containing protein YP_693386.1 1906439 R 393595 CDS YP_693387.1 110834528 4211298 complement(1907235..1908104) 1 NC_008260.1 identified by sequence similarity; InterPro: SAM (and some other nucleotide) binding motif; Hypothetical protein; methyltransferase 1908104 4211298 ABO_1667 Alcanivorax borkumensis SK2 methyltransferase YP_693387.1 1907235 R 393595 CDS YP_693388.1 110834529 4211299 complement(1908240..1909091) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00520; Family membership; Ion transport protein 1909091 4211299 ABO_1668 Alcanivorax borkumensis SK2 Ion transport protein YP_693388.1 1908240 R 393595 CDS YP_693389.1 110834530 4211300 complement(1909209..1909622) 1 NC_008260.1 hypothetical protein 1909622 4211300 ABO_1669 Alcanivorax borkumensis SK2 hypothetical protein YP_693389.1 1909209 R 393595 CDS YP_693390.1 110834531 4211301 1909792..1910067 1 NC_008260.1 hypothetical protein 1910067 4211301 ABO_1670 Alcanivorax borkumensis SK2 hypothetical protein YP_693390.1 1909792 D 393595 CDS YP_693391.1 110834532 4211302 1910479..1911135 1 NC_008260.1 hypothetical protein 1911135 4211302 ABO_1671 Alcanivorax borkumensis SK2 hypothetical protein YP_693391.1 1910479 D 393595 CDS YP_693392.1 110834533 4211303 complement(1911174..1911716) 1 NC_008260.1 hypothetical protein 1911716 4211303 ABO_1672 Alcanivorax borkumensis SK2 hypothetical protein YP_693392.1 1911174 R 393595 CDS YP_693393.1 110834534 4211304 complement(1911719..1912993) 1 NC_008260.1 (ABC efflux transporter, permease protein, ) identified by match to PFAM protein family HMMPF03824 InterPro: DUF214; Family membership; efflux ABC transporter permease 1912993 4211304 ABO_1673 Alcanivorax borkumensis SK2 efflux ABC transporter permease YP_693393.1 1911719 R 393595 CDS YP_693394.1 110834535 4211305 complement(1912947..1913654) 1 NC_008260.1 (ABC transporter, ATP-binding protein, ) identified by sequencesimilarity; InterPro: AAA ATPase superfamily; Family membership; ABC transporter ATP-binding protein 1913654 4211305 ABO_1674 Alcanivorax borkumensis SK2 ABC transporter ATP-binding protein YP_693394.1 1912947 R 393595 CDS YP_693395.1 110834536 4211306 complement(1913662..1914216) 1 NC_008260.1 hypothetical protein 1914216 4211306 ABO_1675 Alcanivorax borkumensis SK2 hypothetical protein YP_693395.1 1913662 R 393595 CDS YP_693396.1 110834537 4211307 complement(1914194..1914598) 1 NC_008260.1 hypothetical protein 1914598 4211307 ABO_1676 Alcanivorax borkumensis SK2 hypothetical protein YP_693396.1 1914194 R 393595 CDS YP_693397.1 110834538 4211308 complement(1914624..1915097) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Ferric uptake regulator family; Family membership; FUR family transcriptional regulator 1915097 4211308 ABO_1677 Alcanivorax borkumensis SK2 FUR family transcriptional regulator YP_693397.1 1914624 R 393595 CDS YP_693398.1 110834539 4211309 complement(1915107..1915733) 1 NC_008260.1 conserved hypothetical protein; hypothetical protein 1915733 4211309 ABO_1678 Alcanivorax borkumensis SK2 hypothetical protein YP_693398.1 1915107 R 393595 CDS YP_693399.1 110834540 4212345 complement(1915733..1917004) 1 NC_008260.1 (CobW/P47K family protein, ) identified by sequencesimilarity; InterPro: Cobalamin synthesis protein/P47K; Family membership; CobW/P47K family protein 1917004 cobW 4212345 cobW Alcanivorax borkumensis SK2 CobW/P47K family protein YP_693399.1 1915733 R 393595 CDS YP_693400.1 110834541 4212222 complement(1916961..1917383) 1 NC_008260.1 (DnaK suppressor protein homolog; C4-type zinc finger protein DksA/TraR family) identified by match to PFAM protein family HMMPF01258; Family membership; DnaK suppressor protein 1917383 dksA1 4212222 dksA1 Alcanivorax borkumensis SK2 DnaK suppressor protein YP_693400.1 1916961 R 393595 CDS YP_693401.1 110834542 4211310 1917451..1917675 1 NC_008260.1 hypothetical protein 1917675 4211310 ABO_1681 Alcanivorax borkumensis SK2 hypothetical protein YP_693401.1 1917451 D 393595 CDS YP_693402.1 110834543 4211311 1917672..1918232 1 NC_008260.1 (Carbonic anhydrases/acetyltransferases, isoleucine patch superfamilyprotein, ) identified by sequencesimilarity; InterPro: Bacterial transferase hexapeptide repeat; Family membership; carbonic anhydrase 1918232 4211311 ABO_1682 Alcanivorax borkumensis SK2 carbonic anhydrase YP_693402.1 1917672 D 393595 CDS YP_693403.1 110834544 4211155 1918222..1919544 1 NC_008260.1 Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 1919544 pyrC 4211155 pyrC Alcanivorax borkumensis SK2 dihydroorotase YP_693403.1 1918222 D 393595 CDS YP_693404.1 110834545 4211328 complement(1919651..1920244) 1 NC_008260.1 Phosphoglycolate phosphatase; Family membership; phosphoglycolate phosphatase 1920244 pgp 4211328 pgp Alcanivorax borkumensis SK2 phosphoglycolate phosphatase YP_693404.1 1919651 R 393595 CDS YP_693405.1 110834546 4211312 complement(1920282..1921289) 1 NC_008260.1 hypothetical protein 1921289 4211312 ABO_1685 Alcanivorax borkumensis SK2 hypothetical protein YP_693405.1 1920282 R 393595 CDS YP_693406.1 110834547 4212574 complement(1921625..1922335) 1 NC_008260.1 (phosphoadenosine phosphosulfate reductase, 3'-phosphoadenylylsulfate reductase, PAPS reductase thioredoxin dependent, PADOPS reductase, PAPS sulfotransferase) identified by sequence similarity; identified by match to PFAM protein family HMMPF01507 and TIGRFAM protein family HMMTIGR00434 InterPro: Phosphoadenosine phosphosulfate reductase; High confidence in function and specificity; phosphoadenosine phosphosulfate reductase 1922335 cysH 4212574 cysH Alcanivorax borkumensis SK2 phosphoadenosine phosphosulfate reductase YP_693406.1 1921625 R 393595 CDS YP_693407.1 110834548 4211313 1922764..1923177 1 NC_008260.1 (hypothetical signal peptide protein) identified by match to PFAM protein family HMMPF03734; hypothetical protein 1923177 4211313 ABO_1687 Alcanivorax borkumensis SK2 hypothetical protein YP_693407.1 1922764 D 393595 CDS YP_693408.1 110834549 4211314 complement(1923471..1924967) 1 NC_008260.1 Function unclear; TonB-dependent siderophore receptor 1924967 4211314 ABO_1688 Alcanivorax borkumensis SK2 TonB-dependent siderophore receptor YP_693408.1 1923471 R 393595 CDS YP_693409.1 110834550 4212132 complement(1925022..1925189) 1 NC_008260.1 bfrA; exogenous ferric siderophore receptor,homologf of fepA (Abo_; Hypothetical protein; exogenous ferric siderophore receptor 1925189 bfrA 4212132 bfrA Alcanivorax borkumensis SK2 exogenous ferric siderophore receptor YP_693409.1 1925022 R 393595 CDS YP_693410.1 110834551 4211322 complement(1925396..1926751) 1 NC_008260.1 (sensor histidine kinase) identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; High confidence in function and specificity; kinase sensor protein 1926751 pfeS 4211322 pfeS Alcanivorax borkumensis SK2 kinase sensor protein YP_693410.1 1925396 R 393595 CDS YP_693411.1 110834552 4211321 complement(1926751..1927491) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00072; Specificity unclear; DNA-binding response regulator 1927491 pfeR 4211321 pfeR Alcanivorax borkumensis SK2 DNA-binding response regulator YP_693411.1 1926751 R 393595 CDS YP_693412.1 110834553 4213159 1927627..1928232 1 NC_008260.1 Uncharacterized protein conserved in bacteria (COG 3295); hypothetical protein 1928232 4213159 ABO_1692 Alcanivorax borkumensis SK2 hypothetical protein YP_693412.1 1927627 D 393595 CDS YP_693413.1 110834554 4213160 1928265..1928756 1 NC_008260.1 hypothetical protein 1928756 4213160 ABO_1693 Alcanivorax borkumensis SK2 hypothetical protein YP_693413.1 1928265 D 393595 CDS YP_693414.1 110834555 4213161 1928782..1929594 1 NC_008260.1 Conserved hypothetical protein; hypothetical protein 1929594 4213161 ABO_1694 Alcanivorax borkumensis SK2 hypothetical protein YP_693414.1 1928782 D 393595 CDS YP_693415.1 110834556 4212210 1929825..1931480 1 NC_008260.1 identified by match to PFAM protein family HMMPF00271 InterPro: DEAD/DEAH box helicase; High confidence in function and specificity; DEAD/DEAH box helicase 1931480 deaD 4212210 deaD Alcanivorax borkumensis SK2 DEAD/DEAH box helicase YP_693415.1 1929825 D 393595 CDS YP_693416.1 110834557 4213162 complement(1931631..1931846) 1 NC_008260.1 hypothetical protein 1931846 4213162 ABO_1696 Alcanivorax borkumensis SK2 hypothetical protein YP_693416.1 1931631 R 393595 CDS YP_693417.1 110834558 4212264 complement(1932179..1932895) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Nitroreductase family; Family membership; nitrobenzoate reductase 1932895 pnb 4212264 pnb Alcanivorax borkumensis SK2 nitrobenzoate reductase YP_693417.1 1932179 R 393595 CDS YP_693418.1 110834559 4213163 1932957..1933460 1 NC_008260.1 hypothetical protein 1933460 4213163 ABO_1698 Alcanivorax borkumensis SK2 hypothetical protein YP_693418.1 1932957 D 393595 CDS YP_693419.1 110834560 4213164 1933514..1933966 1 NC_008260.1 Hypothetical protein; hypothetical protein 1933966 4213164 ABO_1699 Alcanivorax borkumensis SK2 hypothetical protein YP_693419.1 1933514 D 393595 CDS YP_693420.1 110834561 4213165 1934096..1936459 1 NC_008260.1 esterified fatty acid cis/trans isomerase family protein identified by sequence similarity; Family membership; esterified fatty acid cis/trans isomerase family protein 1936459 4213165 ABO_1700 Alcanivorax borkumensis SK2 esterified fatty acid cis/trans isomerase family protein YP_693420.1 1934096 D 393595 CDS YP_693421.1 110834562 4211804 1936837..1938144 1 NC_008260.1 (acyl-CoA dehydrogenase, C-terminal domain) identified by sequencesimilarity; InterPro: Acyl-CoA dehydrogenase; High confidence in function and specificity; acyl-CoA dehydrogenase 1938144 acdA 4211804 acdA Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_693421.1 1936837 D 393595 CDS YP_693422.1 110834563 4213166 1938159..1939364 1 NC_008260.1 identified by match to PFAM protein family HMMPF02770 InterPro: Acyl-CoA dehydrogenase; Family membership; acyl-CoA dehydrogenase 1939364 4213166 ABO_1702 Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_693422.1 1938159 D 393595 CDS YP_693423.1 110834564 4213834 complement(1939619..1939948) 1 NC_008260.1 (transcriptional regulator ArsR family) identified by match to PFAM protein family HMMPF01022 InterPro: Bacterial regulatory proteins ArsR family; Family membership; ArsR family transcriptional regulator 1939948 arsR 4213834 arsR Alcanivorax borkumensis SK2 ArsR family transcriptional regulator YP_693423.1 1939619 R 393595 CDS YP_693424.1 110834565 4213167 1940064..1941317 1 NC_008260.1 (oxidoreductase FMN-binding) identified by match to PFAM protein family HMMPF00724 InterPro: NADH:flavin oxidoreductase/NADH oxidase; Conserved hypothetical protein; NADH:flavin oxidoreductase 1941317 4213167 ABO_1704 Alcanivorax borkumensis SK2 NADH:flavin oxidoreductase YP_693424.1 1940064 D 393595 CDS YP_693425.1 110834566 4211868 complement(1941440..1943458) 1 NC_008260.1 (2,4-dienoyl-CoA reductase FadH) identified by sequencesimilarity; InterPro: NADH:flavin oxidoreductase/NADH oxidase; High confidence in function and specificity; 2,4-dienoyl-CoA reductase 1943458 fadH 4211868 fadH Alcanivorax borkumensis SK2 2,4-dienoyl-CoA reductase YP_693425.1 1941440 R 393595 CDS YP_693426.1 110834567 4213168 1943650..1944243 1 NC_008260.1 identified by sequencesimilarity; InterPro: Bacterial regulatory proteins TetR family HTH reporting nucleic acid binding motif; Family membership; TetR family transcriptional regulator 1944243 4213168 ABO_1706 Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_693426.1 1943650 D 393595 CDS YP_693427.1 110834568 4213169 complement(1944403..1945428) 1 NC_008260.1 hydrolase alpha/beta fold family identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Specificity unclear; alpha/beta hydrolase 1945428 4213169 ABO_1707 Alcanivorax borkumensis SK2 alpha/beta hydrolase YP_693427.1 1944403 R 393595 CDS YP_693428.1 110834569 4213170 complement(1945481..1946851) 1 NC_008260.1 identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Specificity unclear; sensor histidine kinase 1946851 4213170 ABO_1708 Alcanivorax borkumensis SK2 sensor histidine kinase YP_693428.1 1945481 R 393595 CDS YP_693429.1 110834570 4213171 complement(1946848..1947516) 1 NC_008260.1 DNA-binding response regulator) identified by match to TIGR protein family HMMTIGR01387 InterPro: Response regulator receiver domain; Function unclear; DNA-binding response regulator 1947516 4213171 ABO_1709 Alcanivorax borkumensis SK2 DNA-binding response regulator YP_693429.1 1946848 R 393595 CDS YP_693430.1 110834571 4213172 complement(1947516..1947896) 1 NC_008260.1 hypothetical protein 1947896 4213172 ABO_1710 Alcanivorax borkumensis SK2 hypothetical protein YP_693430.1 1947516 R 393595 CDS YP_693431.1 110834572 4213173 complement(1947856..1948200) 1 NC_008260.1 hypothetical protein 1948200 4213173 ABO_1711 Alcanivorax borkumensis SK2 hypothetical protein YP_693431.1 1947856 R 393595 CDS YP_693432.1 110834573 4213174 complement(1948548..1949834) 1 NC_008260.1 Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 1949834 4213174 ABO_1712 Alcanivorax borkumensis SK2 acetyl-CoA acetyltransferase YP_693432.1 1948548 R 393595 CDS YP_693433.1 110834574 4213037 1950119..1951576 1 NC_008260.1 Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1951576 fabG 4213037 fabG Alcanivorax borkumensis SK2 3-ketoacyl-ACP reductase YP_693433.1 1950119 D 393595 CDS YP_693434.1 110834575 4213175 1951812..1952330 1 NC_008260.1 identified by match to PFAM protein family HMMPF04186; hypothetical protein 1952330 4213175 ABO_1714 Alcanivorax borkumensis SK2 hypothetical protein YP_693434.1 1951812 D 393595 CDS YP_693435.1 110834576 4213176 complement(1952723..1953736) 1 NC_008260.1 transcriptional regulator AraC family identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; Family membership; AraC family transcriptional regulator 1953736 4213176 ABO_1715 Alcanivorax borkumensis SK2 AraC family transcriptional regulator YP_693435.1 1952723 R 393595 CDS YP_693436.1 110834577 4213177 complement(1953844..1955004) 1 NC_008260.1 hypothetical protein 1955004 4213177 ABO_1716 Alcanivorax borkumensis SK2 hypothetical protein YP_693436.1 1953844 R 393595 CDS YP_693437.1 110834578 4213139 complement(1955032..1956153) 1 NC_008260.1 (oxidoreductase FAD-binding ) identified by sequencesimilarity; InterPro: Oxidoreductase FAD and NAD(P)-binding domain; Family membership; flavodoxin reductase-like protein 1956153 4213139 ABO_1717 Alcanivorax borkumensis SK2 flavodoxin reductase-like protein YP_693437.1 1955032 R 393595 CDS YP_693438.1 110834579 4213140 1956338..1956988 1 NC_008260.1 transcriptional regulator TetR family identified by match to PFAM protein family HMMPF00440 InterPro: Bacterial regulatory proteins TetR family; Family membership; TetR family transcriptional regulator 1956988 4213140 ABO_1718 Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_693438.1 1956338 D 393595 CDS YP_693439.1 110834580 4213141 1957151..1958020 1 NC_008260.1 (MaoC domain protein, ) identified by match to PFAM protein family HMMPF01575 InterPro: MaoC-like dehydratase domain; Family membership; acyl dehydratase MaoC 1958020 4213141 ABO_1719 Alcanivorax borkumensis SK2 acyl dehydratase MaoC YP_693439.1 1957151 D 393595 CDS YP_693440.1 110834581 4213142 1958220..1959308 1 NC_008260.1 catalyzes the selenophosphate-dependent transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA; tRNA 2-selenouridine synthase 1959308 4213142 ABO_1720 Alcanivorax borkumensis SK2 tRNA 2-selenouridine synthase YP_693440.1 1958220 D 393595 CDS YP_693441.1 110834582 4213143 1959397..1960263 1 NC_008260.1 phosphate ABC transporter periplasmicphosphate-binding protein identified by sequence similarity; Function unclear; phosphate ABC transporter substrate-binding protein 1960263 4213143 ABO_1721 Alcanivorax borkumensis SK2 phosphate ABC transporter substrate-binding protein YP_693441.1 1959397 D 393595 CDS YP_693442.1 110834583 4213144 1960284..1960961 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00972 InterPro: AAA ATPase superfamily possibly phosphate transporter; Family membership; ABC transporter ATP-binding protein 1960961 4213144 ABO_1722 Alcanivorax borkumensis SK2 ABC transporter ATP-binding protein YP_693442.1 1960284 D 393595 CDS YP_693443.1 110834584 4213145 1960972..1962492 1 NC_008260.1 hypothetical protein 1962492 4213145 ABO_1723 Alcanivorax borkumensis SK2 hypothetical protein YP_693443.1 1960972 D 393595 CDS YP_693444.1 110834585 4213146 1962531..1963304 1 NC_008260.1 (phenazine biosynthesis-like protein, ) identified by match to PFAM protein family HMMPF02567 InterPro: Phenazine biosynthesis PhzC/PhzF protein; Family membership; phenazine biosynthesis-like protein 1963304 4213146 ABO_1724 Alcanivorax borkumensis SK2 phenazine biosynthesis-like protein YP_693444.1 1962531 D 393595 CDS YP_693445.1 110834586 4213147 1963315..1965531 1 NC_008260.1 (selenide water dikinase) identified by match to PFAM protein family HMMPF02769 InterPro: AIR synthase related protein; hypothetical protein 1965531 4213147 ABO_1725 Alcanivorax borkumensis SK2 hypothetical protein YP_693445.1 1963315 D 393595 CDS YP_693446.1 110834587 4213148 1965558..1965953 1 NC_008260.1 hypothetical protein 1965953 4213148 ABO_1726 Alcanivorax borkumensis SK2 hypothetical protein YP_693446.1 1965558 D 393595 CDS YP_693447.1 110834588 4213149 1965969..1966919 1 NC_008260.1 hypothetical protein 1966919 4213149 ABO_1727 Alcanivorax borkumensis SK2 hypothetical protein YP_693447.1 1965969 D 393595 CDS YP_693448.1 110834589 4211534 1967187..1967858 1 NC_008260.1 member of the SPOUT superfamily of methyltransferases; RNA methyltransferase 1967858 lasT 4211534 lasT Alcanivorax borkumensis SK2 RNA methyltransferase YP_693448.1 1967187 D 393595 CDS YP_693449.1 110834590 4213150 1967869..1971264 1 NC_008260.1 (potassium efflux system protein KefA ) identified by sequence similarity; InterPro: Uncharacterized protein family UPF0003 shows 36 38dentity to the (aefA) (potassium efflux system protein KefA, )in Pseudomonas putida KT2440 (PP5067); hypothetical protein 1971264 4213150 ABO_1729 Alcanivorax borkumensis SK2 hypothetical protein YP_693449.1 1967869 D 393595 CDS YP_693450.1 110834591 4213151 complement(1971353..1971655) 1 NC_008260.1 (hypothetical protein) identified by Glimmer2; hypothetical protein 1971655 4213151 ABO_1730 Alcanivorax borkumensis SK2 hypothetical protein YP_693450.1 1971353 R 393595 CDS YP_693451.1 110834592 4211281 1971941..1973833 1 NC_008260.1 (acetyl-CoA synthetase ) identified by sequence similarity; High confidence in function and specificity; acetyl-CoA synthetase 1973833 acsA 4211281 acsA Alcanivorax borkumensis SK2 acetyl-CoA synthetase YP_693451.1 1971941 D 393595 CDS YP_693452.1 110834593 4213152 1974414..1975286 1 NC_008260.1 hypothetical protein 1975286 4213152 ABO_1732 Alcanivorax borkumensis SK2 hypothetical protein YP_693452.1 1974414 D 393595 CDS YP_693453.1 110834594 4213153 1975308..1976810 1 NC_008260.1 hypothetical protein 1976810 4213153 ABO_1733 Alcanivorax borkumensis SK2 hypothetical protein YP_693453.1 1975308 D 393595 CDS YP_693454.1 110834595 4213154 1977209..1977811 1 NC_008260.1 hypothetical protein 1977811 4213154 ABO_1734 Alcanivorax borkumensis SK2 hypothetical protein YP_693454.1 1977209 D 393595 CDS YP_693455.1 110834596 4213155 complement(1977987..1978394) 1 NC_008260.1 conserved hypothetical protein; hypothetical protein 1978394 4213155 ABO_1735 Alcanivorax borkumensis SK2 hypothetical protein YP_693455.1 1977987 R 393595 CDS YP_693456.1 110834597 4213156 complement(1978482..1979600) 1 NC_008260.1 identified by match to PFAM protein family HMMPF04116; hypothetical protein 1979600 4213156 ABO_1736 Alcanivorax borkumensis SK2 hypothetical protein YP_693456.1 1978482 R 393595 CDS YP_693457.1 110834598 4213157 1979936..1981813 1 NC_008260.1 (ABC transporter, ATP-binding protein, ) identified by sequence similarity; InterPro: AAA ATPase superfamily; Family membership; ABC transporter ATP-binding protein 1981813 4213157 ABO_1737 Alcanivorax borkumensis SK2 ABC transporter ATP-binding protein YP_693457.1 1979936 D 393595 CDS YP_693458.1 110834599 4213158 1981951..1983231 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 1983231 4213158 ABO_1738 Alcanivorax borkumensis SK2 hypothetical protein YP_693458.1 1981951 D 393595 CDS YP_693459.1 110834600 4213491 1983293..1983643 1 NC_008260.1 Hypothetical protein; hypothetical protein 1983643 4213491 ABO_1739 Alcanivorax borkumensis SK2 hypothetical protein YP_693459.1 1983293 D 393595 CDS YP_693460.1 110834601 4213492 complement(1983305..1983628) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01259, TIGR00426; Family membership; competence protein ComEA 1983628 4213492 ABO_1740 Alcanivorax borkumensis SK2 competence protein ComEA YP_693460.1 1983305 R 393595 CDS YP_693461.1 110834602 4211641 complement(1983726..1984421) 1 NC_008260.1 type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase 1984421 pyrF 4211641 pyrF Alcanivorax borkumensis SK2 orotidine 5'-phosphate decarboxylase YP_693461.1 1983726 R 393595 CDS YP_693462.1 110834603 4213493 complement(1984616..1985785) 1 NC_008260.1 tetratricopeptide repeat protein 1985785 4213493 ABO_1742 Alcanivorax borkumensis SK2 tetratricopeptide repeat protein YP_693462.1 1984616 R 393595 CDS YP_693463.1 110834604 4213494 complement(1985782..1986012) 1 NC_008260.1 hypothetical protein 1986012 4213494 ABO_1743 Alcanivorax borkumensis SK2 hypothetical protein YP_693463.1 1985782 R 393595 CDS YP_693464.1 110834605 4211347 complement(1986055..1986408) 1 NC_008260.1 (integration host factor beta subunit); Family membership; integration host factor subunit beta 1986408 ihfB 4211347 ihfB Alcanivorax borkumensis SK2 integration host factor subunit beta YP_693464.1 1986055 R 393595 CDS YP_693465.1 110834606 4212371 complement(1986476..1988158) 1 NC_008260.1 in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 1988158 rpsA 4212371 rpsA Alcanivorax borkumensis SK2 30S ribosomal protein S1 YP_693465.1 1986476 R 393595 CDS YP_693466.1 110834607 4212467 complement(1988333..1989004) 1 NC_008260.1 identified by sequence similarity; InterPro: Cytidylate kinase; High confidence in function and specificity; cytidylate kinase 1989004 cmk 4212467 cmk Alcanivorax borkumensis SK2 cytidylate kinase YP_693466.1 1988333 R 393595 CDS YP_693467.1 110834608 4211719 complement(1989001..1991283) 1 NC_008260.1 catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate and catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase 1991283 tyrA/aroF 4211719 tyrA/aroF Alcanivorax borkumensis SK2 bifunctional cyclohexadienyl dehydrogenase/ 3-phosphoshikimate 1-carboxyvinyltransferase YP_693467.1 1989001 R 393595 CDS YP_693468.1 110834609 4212200 complement(1991385..1992497) 1 NC_008260.1 catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1992497 hisC-2 4212200 hisC-2 Alcanivorax borkumensis SK2 histidinol-phosphate aminotransferase YP_693468.1 1991385 R 393595 CDS YP_693469.1 110834610 4211601 complement(1992608..1993690) 1 NC_008260.1 (P-protein including chorismate mutase and prephenate dehydratase) identified by sequence similarity; identified by match to PFAM protein family HMMPF01817 InterPro: Prephenate dehydratase (PDT); High confidence in function and specificity; chorismate mutase/prephenate dehydratase 1993690 pheA 4211601 pheA Alcanivorax borkumensis SK2 chorismate mutase/prephenate dehydratase YP_693469.1 1992608 R 393595 CDS YP_693470.1 110834611 4213631 complement(1993869..1994951) 1 NC_008260.1 catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1994951 serC 4213631 serC Alcanivorax borkumensis SK2 phosphoserine aminotransferase YP_693470.1 1993869 R 393595 CDS YP_693471.1 110834612 4212663 complement(1995127..1997889) 1 NC_008260.1 (type II topoisomerase). identified by match to PFAM protein family HMMPF00521 InterPro: DNA gyrase/topoisomerase IV subunit A; High confidence in function and specificity; DNA gyrase subunit A 1997889 gyrA 4212663 gyrA Alcanivorax borkumensis SK2 DNA gyrase subunit A YP_693471.1 1995127 R 393595 CDS YP_693472.1 110834613 4213495 1998270..1999601 1 NC_008260.1 Catalyzes the hydrolytic cleavage of a carbon-halogen bond in N-ethylammeline; N-ethylammeline chlorohydrolase 1999601 4213495 ABO_1752 Alcanivorax borkumensis SK2 N-ethylammeline chlorohydrolase YP_693472.1 1998270 D 393595 CDS YP_693473.1 110834614 4211724 1999555..2000313 1 NC_008260.1 identified by match to PFAM protein family HMMPF01209 InterPro: ubiE/COQ5 methyltransferase; High confidence in function and specificity; 3-demethylubiquinone-9 3-methyltransferase 2000313 ubiG 4211724 ubiG Alcanivorax borkumensis SK2 3-demethylubiquinone-9 3-methyltransferase YP_693473.1 1999555 D 393595 CDS YP_693474.1 110834615 4212774 2000333..2001001 1 NC_008260.1 identified by match to PFAM protein family HMMPF00702; InterPro: Haloacid dehalogenase/epoxide hydrolase family; Family membership; phosphoglycolate phosphatase 2001001 gph 4212774 gph Alcanivorax borkumensis SK2 phosphoglycolate phosphatase YP_693474.1 2000333 D 393595 CDS YP_693475.1 110834616 4213496 2001130..2001897 1 NC_008260.1 oxidoreductase short chaindehydrogenase/reductase family identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; short chain dehydrogenase/reductase family oxidoreductase 2001897 4213496 ABO_1755 Alcanivorax borkumensis SK2 short chain dehydrogenase/reductase family oxidoreductase YP_693475.1 2001130 D 393595 CDS YP_693476.1 110834617 4213497 2002285..2003454 1 NC_008260.1 hypothetical protein 2003454 4213497 ABO_1756 Alcanivorax borkumensis SK2 hypothetical protein YP_693476.1 2002285 D 393595 CDS YP_693477.1 110834618 4213498 2003591..2004661 1 NC_008260.1 Hypothetical protein; hypothetical protein 2004661 4213498 ABO_1757 Alcanivorax borkumensis SK2 hypothetical protein YP_693477.1 2003591 D 393595 CDS YP_693478.1 110834619 4213499 2004787..2005962 1 NC_008260.1 identified by sequence similarity; hypothetical protein 2005962 4213499 ABO_1758 Alcanivorax borkumensis SK2 hypothetical protein YP_693478.1 2004787 D 393595 CDS YP_693479.1 110834620 4213500 complement(2006130..2007491) 1 NC_008260.1 InterPro: ABC1 family probably involved in the biogenesis of ubiquinone; Family membership; ABC1 family protein 2007491 4213500 ABO_1759 Alcanivorax borkumensis SK2 ABC1 family protein YP_693479.1 2006130 R 393595 CDS YP_693480.1 110834621 4213501 2007667..2008695 1 NC_008260.1 High similarity to predicted unusual protein kinase (COG0661); ABC transporter protein kinase (Q8F334); hypothetical protein 2008695 4213501 ABO_1760 Alcanivorax borkumensis SK2 hypothetical protein YP_693480.1 2007667 D 393595 CDS YP_693481.1 110834622 4213502 2008763..2009776 1 NC_008260.1 hypothetical protein 2009776 4213502 ABO_1761 Alcanivorax borkumensis SK2 hypothetical protein YP_693481.1 2008763 D 393595 CDS YP_693482.1 110834623 4213503 2009972..2012302 1 NC_008260.1 identified by sequence similarity; hypothetical protein 2012302 4213503 ABO_1762 Alcanivorax borkumensis SK2 hypothetical protein YP_693482.1 2009972 D 393595 CDS YP_693483.1 110834624 4213504 2012647..2013009 1 NC_008260.1 hypothetical protein 2013009 4213504 ABO_1763 Alcanivorax borkumensis SK2 hypothetical protein YP_693483.1 2012647 D 393595 CDS YP_693484.1 110834625 4211475 complement(2013262..2013714) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01230, InterPro: HIT (Histidine triad protein) family; Family membership; HIT family protein 2013714 hit-1 4211475 hit-1 Alcanivorax borkumensis SK2 HIT family protein YP_693484.1 2013262 R 393595 CDS YP_693485.1 110834626 4213505 complement(2013711..2014070) 1 NC_008260.1 hypothetical protein 2014070 4213505 ABO_1765 Alcanivorax borkumensis SK2 hypothetical protein YP_693485.1 2013711 R 393595 CDS YP_693486.1 110834627 4213506 complement(2014108..2014569) 1 NC_008260.1 hypothetical protein 2014569 4213506 ABO_1766 Alcanivorax borkumensis SK2 hypothetical protein YP_693486.1 2014108 R 393595 CDS YP_693487.1 110834628 4213507 complement(2014559..2014876) 1 NC_008260.1 hypothetical protein 2014876 4213507 ABO_1767 Alcanivorax borkumensis SK2 hypothetical protein YP_693487.1 2014559 R 393595 CDS YP_693488.1 110834629 4212119 complement(2014876..2015949) 1 NC_008260.1 identified by sequence similarity; InterPro: 3-5 exonuclease; High confidence in function and specificity; ribonuclease D 2015949 rnd 4212119 rnd Alcanivorax borkumensis SK2 ribonuclease D YP_693488.1 2014876 R 393595 CDS YP_693489.1 110834630 4212775 2016170..2016916 1 NC_008260.1 identified by sequence similarity; InterPro: Phosphoglycerate mutase family; High confidence in function and specificity; phosphoglycerate mutase 2016916 gpm 4212775 gpm Alcanivorax borkumensis SK2 phosphoglycerate mutase YP_693489.1 2016170 D 393595 CDS YP_693490.1 110834631 4213508 2017420..2017632 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2017632 4213508 ABO_1770 Alcanivorax borkumensis SK2 hypothetical protein YP_693490.1 2017420 D 393595 CDS YP_693491.1 110834632 4213509 2017732..2018724 1 NC_008260.1 hypothetical protein 2018724 4213509 ABO_1771 Alcanivorax borkumensis SK2 hypothetical protein YP_693491.1 2017732 D 393595 CDS YP_693492.1 110834633 4211256 complement(2018839..2019981) 1 NC_008260.1 InterPro: Acyl-CoA dehydrogenase pae:PA4435; Function unclear; acyl-CoA dehydrogenase 2019981 4211256 ABO_1772 Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_693492.1 2018839 R 393595 CDS YP_693493.1 110834634 4212034 complement(2020133..2020735) 1 NC_008260.1 identified by sequence similarity; InterPro: RecR protein; High confidence in function and specificity; recombination protein RecR 2020735 recR 4212034 recR Alcanivorax borkumensis SK2 recombination protein RecR YP_693493.1 2020133 R 393595 CDS YP_693494.1 110834635 4211257 complement(2020760..2021077) 1 NC_008260.1 identified by match to PFAM protein family HMMPF02575 InterPro: Conserved hypothetical protein 103; hypothetical protein 2021077 4211257 ABO_1774 Alcanivorax borkumensis SK2 hypothetical protein YP_693494.1 2020760 R 393595 CDS YP_693495.1 110834636 4211403 complement(2021162..2023009) 1 NC_008260.1 identified by sequence similarity; InterPro: AAA-protein (ATPases associated with various cellular activities); High confidence in function and specificity; DNA polymerase III subunits gamma and tau 2023009 dnaX 4211403 dnaX Alcanivorax borkumensis SK2 DNA polymerase III subunits gamma and tau YP_693495.1 2021162 R 393595 CDS YP_693496.1 110834637 4211681 2023476..2024492 1 NC_008260.1 (Glyceraldehyde 3-phosphate dehydrogenase) identified by sequencesimilarity; InterPro: Glyceraldehyde 3-phosphate dehydrogenase; High confidence in function and specificity; glyceraldehyde-3-phosphate dehydrogenase 2024492 gap 4211681 gap Alcanivorax borkumensis SK2 glyceraldehyde-3-phosphate dehydrogenase YP_693496.1 2023476 D 393595 CDS YP_693497.1 110834638 4211258 complement(2024693..2025142) 1 NC_008260.1 (ibpA) identified by sequencesimilarity; InterPro: Heat shock hsp20 (alpha crystallin) proteins family; Specificity unclear; heat-shock protein IbpA 2025142 4211258 ABO_1777 Alcanivorax borkumensis SK2 heat-shock protein IbpA YP_693497.1 2024693 R 393595 CDS YP_693498.1 110834639 4211259 complement(2025440..2026084) 1 NC_008260.1 hypothetical protein 2026084 4211259 ABO_1778 Alcanivorax borkumensis SK2 hypothetical protein YP_693498.1 2025440 R 393595 CDS YP_693499.1 110834640 4211260 complement(2026156..2026707) 1 NC_008260.1 hypothetical protein 2026707 4211260 ABO_1779 Alcanivorax borkumensis SK2 hypothetical protein YP_693499.1 2026156 R 393595 CDS YP_693500.1 110834641 4211261 2027307..2027867 1 NC_008260.1 (transcriptional regulator PadR family) identified by sequence similarity; hypothetical protein 2027867 4211261 ABO_1780 Alcanivorax borkumensis SK2 hypothetical protein YP_693500.1 2027307 D 393595 CDS YP_693501.1 110834642 4211262 complement(2028227..2028505) 1 NC_008260.1 Function unclear; transposase OrfAB subunit B 2028505 4211262 ABO_1781 Alcanivorax borkumensis SK2 transposase OrfAB subunit B YP_693501.1 2028227 R 393595 CDS YP_693502.1 110834643 4211263 complement(2029158..2029919) 1 NC_008260.1 siderophore biosynthesis protein (transferase for other substituted phosphate groups) identified by sequence similarity; Function unclear; siderophore biosynthesis protein 2029919 4211263 ABO_1782 Alcanivorax borkumensis SK2 siderophore biosynthesis protein YP_693502.1 2029158 R 393595 CDS YP_693503.1 110834644 4211264 complement(2029916..2031217) 1 NC_008260.1 (glycosyl transferase, ) identified by sequencesimilarity; Family membership; glycosyl transferase family protein 2031217 4211264 ABO_1783 Alcanivorax borkumensis SK2 glycosyl transferase family protein YP_693503.1 2029916 R 393595 CDS YP_693504.1 110834645 4211265 complement(2031340..2035425) 1 NC_008260.1 non-ribosomal peptide synthase fragment, contains condensation, fatty-acid-CoA ligase and thioesterase domains. identified by sequence similarity; InterPro: AMP-dependent synthetase and ligase; Family membership; non-ribosomal peptide synthase fragment 2035425 4211265 ABO_1784 Alcanivorax borkumensis SK2 non-ribosomal peptide synthase fragment YP_693504.1 2031340 R 393595 CDS YP_693505.1 110834646 4211266 complement(2035994..2036440) 1 NC_008260.1 Family membership; transposase 2036440 4211266 ABO_1785 Alcanivorax borkumensis SK2 transposase YP_693505.1 2035994 R 393595 CDS YP_693506.1 110834647 4211267 complement(2036397..2037092) 1 NC_008260.1 InterPro: Integrase catalytic core; Family membership; transposase 2037092 4211267 ABO_1786 Alcanivorax borkumensis SK2 transposase YP_693506.1 2036397 R 393595 CDS YP_693507.1 110834648 4211268 complement(2037216..2037590) 1 NC_008260.1 transposase OrfA identified by match to PFAM protein family HMMPF04218; Family membership; transposase, OrfA 2037590 4211268 ABO_1787 Alcanivorax borkumensis SK2 transposase, OrfA YP_693507.1 2037216 R 393595 CDS YP_693508.1 110834649 4211269 2038161..2038430 1 NC_008260.1 Hypothetical protein; hypothetical protein 2038430 4211269 ABO_1788 Alcanivorax borkumensis SK2 hypothetical protein YP_693508.1 2038161 D 393595 CDS YP_693509.1 110834650 4211270 2038399..2039433 1 NC_008260.1 hypothetical protein 2039433 4211270 ABO_1789 Alcanivorax borkumensis SK2 hypothetical protein YP_693509.1 2038399 D 393595 CDS YP_693510.1 110834651 4211271 2039427..2039963 1 NC_008260.1 hypothetical protein 2039963 4211271 ABO_1790 Alcanivorax borkumensis SK2 hypothetical protein YP_693510.1 2039427 D 393595 CDS YP_693511.1 110834652 4211272 complement(2040048..2042204) 1 NC_008260.1 (acetyl-CoA hydrolase/transferase family protein) identified by sequencesimilarity; Family membership; acetyl-CoA hydrolase/transferase family protein 2042204 4211272 ABO_1791 Alcanivorax borkumensis SK2 acetyl-CoA hydrolase/transferase family protein YP_693511.1 2040048 R 393595 CDS YP_693512.1 110834653 4211273 complement(2042246..2042590) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00893 InterPro: Integral membrane protein DUF7; Family membership; small multidrug resistance protein 2042590 4211273 ABO_1792 Alcanivorax borkumensis SK2 small multidrug resistance protein YP_693512.1 2042246 R 393595 CDS YP_693513.1 110834654 4211274 complement(2042620..2043651) 1 NC_008260.1 CobW/P47K family protein identified by match to PFAM protein family HMMPF02492 InterPro: Cobalamin synthesis protein/P47K; Function unclear; cobalamin synthesis protein/P47K family protein 2043651 4211274 ABO_1793 Alcanivorax borkumensis SK2 cobalamin synthesis protein/P47K family protein YP_693513.1 2042620 R 393595 CDS YP_693514.1 110834655 4211156 complement(2043657..2044691) 1 NC_008260.1 catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 2044691 pyrC 4211156 pyrC Alcanivorax borkumensis SK2 dihydroorotase YP_693514.1 2043657 R 393595 CDS YP_693515.1 110834656 4211275 complement(2044758..2044925) 1 NC_008260.1 hypothetical protein 2044925 4211275 ABO_1795 Alcanivorax borkumensis SK2 hypothetical protein YP_693515.1 2044758 R 393595 CDS YP_693516.1 110834657 4213652 complement(2045046..2045234) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Carbon storage regulator; High confidence in function and specificity; carbon storage regulator CsrA 2045234 csrA 4213652 csrA Alcanivorax borkumensis SK2 carbon storage regulator CsrA YP_693516.1 2045046 R 393595 CDS YP_693517.1 110834658 4211471 complement(2045445..2046671) 1 NC_008260.1 (aspartokinase, aspartate kinase monofunctional class) identified by sequence similarity; identified by match to PFAM protein family HMMPF00696; InterPro: Aspartokinase superfamily; High confidence in function and specificity; aspartokinase 2046671 lysC 4211471 lysC Alcanivorax borkumensis SK2 aspartokinase YP_693517.1 2045445 R 393595 CDS YP_693518.1 110834659 4211293 complement(2046828..2049530) 1 NC_008260.1 (alanyl-tRNA synthetase)(Alanine--tRNA ligase) identified by sequence similarity; InterPro: Alanyl-tRNA synthetase; High confidence in function and specificity; alanyl-tRNA synthetase 2049530 alarS 4211293 alarS Alcanivorax borkumensis SK2 alanyl-tRNA synthetase YP_693518.1 2046828 R 393595 CDS YP_693519.1 110834660 4212146 complement(2049654..2050421) 1 NC_008260.1 identified by sequence similarity; InterPro: Domain of unknown function DUF81; Specificity unclear; hypothetical protein 2050421 4212146 ABO_1799 Alcanivorax borkumensis SK2 hypothetical protein YP_693519.1 2049654 R 393595 CDS YP_693520.1 110834661 4212035 complement(2050673..2051137) 1 NC_008260.1 identified by sequence similarity; InterPro: RecX regulatory protein; High confidence in function and specificity; regulatory protein recx 2051137 recX 4212035 recX Alcanivorax borkumensis SK2 regulatory protein recx YP_693520.1 2050673 R 393595 CDS YP_693521.1 110834662 4211655 complement(2051130..2052164) 1 NC_008260.1 identified by sequence similarity; InterPro: RecA bacterial DNA recombination protein; High confidence in function and specificity; recA protein 2052164 recA 4211655 recA Alcanivorax borkumensis SK2 recA protein YP_693521.1 2051130 R 393595 CDS YP_693522.1 110834663 4212147 complement(2052368..2052856) 1 NC_008260.1 identified by sequence similarity; InterPro: Competence-damaged protein; Family membership; CinA domain-containing protein 2052856 4212147 ABO_1802 Alcanivorax borkumensis SK2 CinA domain-containing protein YP_693522.1 2052368 R 393595 CDS YP_693523.1 110834664 4212148 complement(2052898..2053623) 1 NC_008260.1 (conserved hypothetical protein TIGR01033) identified by match to TIGR protein family HMMTIGR01033 InterPro: Domain of unknown function DUF28; hypothetical protein 2053623 4212148 ABO_1803 Alcanivorax borkumensis SK2 hypothetical protein YP_693523.1 2052898 R 393595 CDS YP_693524.1 110834665 4213841 complement(2053934..2055289) 1 NC_008260.1 acyltransferase, homologous to ABO_2742, AtfA1 and to the ACIAD0832, wax ester synthase/ diacylglycerol acyltransferase of Acinetobacter sp. AP1; High confidence in function and specificity; acyltransferase 2055289 atfA2 4213841 atfA2 Alcanivorax borkumensis SK2 acyltransferase YP_693524.1 2053934 R 393595 CDS YP_693525.1 110834666 4212149 complement(2055467..2055949) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01936; hypothetical protein 2055949 4212149 ABO_1805 Alcanivorax borkumensis SK2 hypothetical protein YP_693525.1 2055467 R 393595 CDS YP_693526.1 110834667 4212150 2056271..2057890 1 NC_008260.1 AMP-binding family protein identified by match to TIGR protein family HMMTIGR01734 InterPro: AMP-dependent synthetase and ligase; Family membership; AMP-binding protein 2057890 4212150 ABO_1806 Alcanivorax borkumensis SK2 AMP-binding protein YP_693526.1 2056271 D 393595 CDS YP_693527.1 110834668 4212151 complement(2058691..2059275) 1 NC_008260.1 hypothetical protein 2059275 4212151 ABO_1807 Alcanivorax borkumensis SK2 hypothetical protein YP_693527.1 2058691 R 393595 CDS YP_693528.1 110834669 4211947 2059483..2059761 1 NC_008260.1 transposase OrfA identified by match to PFAM protein family HMMPF04218 InterPro: Transposase IS911 HTH and LZ region; Family membership; transposase A 2059761 tnpA 4211947 tnpA Alcanivorax borkumensis SK2 transposase A YP_693528.1 2059483 D 393595 CDS YP_693529.1 110834670 4211250 2060042..2062621 1 NC_008260.1 identified by match to PFAM protein family HMMPF01624 InterPro: DNA mismatch repair protein MutS family N-terminal domain; High confidence in function and specificity; DNA mismatch repair protein MutS 2062621 mutS 4211250 mutS Alcanivorax borkumensis SK2 DNA mismatch repair protein MutS YP_693529.1 2060042 D 393595 CDS YP_693530.1 110834671 4212152 2062836..2063159 1 NC_008260.1 identified by sequencesimilarity; InterPro: 4Fe-4S ferredoxin iron-sulfur binding domain; High confidence in function and specificity; ferredoxin, 4Fe-4S 2063159 4212152 ABO_1810 Alcanivorax borkumensis SK2 ferredoxin, 4Fe-4S YP_693530.1 2062836 D 393595 CDS YP_693531.1 110834672 4212153 complement(2063760..2064104) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Hpt domain The N-terminal third of this protein harbours a hpt domain.Similarity to rpfC proteins does only rely on this domain. Usually, rpfC proteins are composed of a histidine kinase domain at the N-terminus, a response regulatory domain in the central part and an hpt domain at the C-terminus.; Family membership; two-component hybrid sensor and regulator 2064104 4212153 ABO_1811 Alcanivorax borkumensis SK2 two-component hybrid sensor and regulator YP_693531.1 2063760 R 393595 CDS YP_693532.1 110834673 4212154 complement(2064184..2064840) 1 NC_008260.1 InterPRO: Uncharacterized BCR (DUF703); hypothetical protein 2064840 4212154 ABO_1812 Alcanivorax borkumensis SK2 hypothetical protein YP_693532.1 2064184 R 393595 CDS YP_693533.1 110834674 4212155 complement(2064837..2065574) 1 NC_008260.1 hypothetical protein 2065574 4212155 ABO_1813 Alcanivorax borkumensis SK2 hypothetical protein YP_693533.1 2064837 R 393595 CDS YP_693534.1 110834675 4212156 complement(2065520..2066476) 1 NC_008260.1 (hypothetical protein) identified by match to PFAM protein family HMMPF04055; hypothetical protein 2066476 4212156 ABO_1814 Alcanivorax borkumensis SK2 hypothetical protein YP_693534.1 2065520 R 393595 CDS YP_693535.1 110834676 4212157 2067373..2067555 1 NC_008260.1 (hypothetical proteins); hypothetical protein 2067555 4212157 ABO_1815 Alcanivorax borkumensis SK2 hypothetical protein YP_693535.1 2067373 D 393595 CDS YP_693536.1 110834677 4212466 complement(2067919..2069370) 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; cardiolipin synthase 2069370 cls 4212466 cls Alcanivorax borkumensis SK2 cardiolipin synthase YP_693536.1 2067919 R 393595 CDS YP_693537.1 110834678 4212158 2069743..2071131 1 NC_008260.1 Conserved hypothetical protein; L-lysine 2,3-aminomutase 2071131 4212158 ABO_1817 Alcanivorax borkumensis SK2 L-lysine 2,3-aminomutase YP_693537.1 2069743 D 393595 CDS YP_693538.1 110834679 4211657 2071348..2074764 1 NC_008260.1 (exodeoxyribonuclease V gamma subunit) identified by sequence similarity; High confidence in function and specificity; exodeoxyribonuclease V subunit gamma 2074764 recC 4211657 recC Alcanivorax borkumensis SK2 exodeoxyribonuclease V subunit gamma YP_693538.1 2071348 D 393595 CDS YP_693539.1 110834680 4211656 2074761..2078381 1 NC_008260.1 (exodeoxyribonuclease V beta subunit) DNA helicase,ATP-dependent dsDNA/ssDNA exonuclease V subunit, ssDNA endonuclease identified by sequence similarity; InterPro: UvrD/REP helicase; High confidence in function and specificity; exodeoxyribonuclease V subunit beta 2078381 recB 4211656 recB Alcanivorax borkumensis SK2 exodeoxyribonuclease V subunit beta YP_693539.1 2074761 D 393595 CDS YP_693540.1 110834681 4211658 2078553..2080490 1 NC_008260.1 (exodeoxyribonuclease V alpha subunit) identified by sequence similarity; InterPro: Viral (superfamily 1) RNA helicase; High confidence in function and specificity; exodeoxyribonuclease V subunit alpha 2080490 recD 4211658 recD Alcanivorax borkumensis SK2 exodeoxyribonuclease V subunit alpha YP_693540.1 2078553 D 393595 CDS YP_693541.1 110834682 4212159 complement(2080810..2081133) 1 NC_008260.1 hypothetical protein 2081133 4212159 ABO_1821 Alcanivorax borkumensis SK2 hypothetical protein YP_693541.1 2080810 R 393595 CDS YP_693542.1 110834683 4212160 complement(2081143..2081337) 1 NC_008260.1 hypothetical protein 2081337 4212160 ABO_1822 Alcanivorax borkumensis SK2 hypothetical protein YP_693542.1 2081143 R 393595 CDS YP_693543.1 110834684 4212161 complement(2081334..2084030) 1 NC_008260.1 hypothetical protein 2084030 4212161 ABO_1823 Alcanivorax borkumensis SK2 hypothetical protein YP_693543.1 2081334 R 393595 CDS YP_693544.1 110834685 4212162 2084314..2085363 1 NC_008260.1 essential GTPase; functions in ribosome assembly; binds a unique part of the 23S rRNA; interacts with ribosomal protein L25(Ctc); ribosomal biogenesis GTPase 2085363 rbgA 4212162 rbgA Alcanivorax borkumensis SK2 ribosomal biogenesis GTPase YP_693544.1 2084314 D 393595 CDS YP_693545.1 110834686 4212163 complement(2085560..2090833) 1 NC_008260.1 identifiedby sequence similarity; Specificity unclear; DNA helicase-like protein 2090833 4212163 ABO_1825 Alcanivorax borkumensis SK2 DNA helicase-like protein YP_693545.1 2085560 R 393595 CDS YP_693546.1 110834687 4212164 complement(2090863..2091408) 1 NC_008260.1 hypothetical protein 2091408 4212164 ABO_1826 Alcanivorax borkumensis SK2 hypothetical protein YP_693546.1 2090863 R 393595 CDS YP_693547.1 110834688 4212242 complement(2091439..2092011) 1 NC_008260.1 identified by match to PFAM protein family HMMPF04174; hypothetical protein 2092011 4212242 ABO_1827 Alcanivorax borkumensis SK2 hypothetical protein YP_693547.1 2091439 R 393595 CDS YP_693548.1 110834689 4212243 complement(2092178..2093923) 1 NC_008260.1 hypothetical protein 2093923 4212243 ABO_1828 Alcanivorax borkumensis SK2 hypothetical protein YP_693548.1 2092178 R 393595 CDS YP_693549.1 110834690 4211489 complement(2093938..2095113) 1 NC_008260.1 (type I restriction-modification system Ssubunit) identified by sequence similarity; InterPro: Restriction modification system type I; High confidence in function and specificity; type I restriction-modification system subunit S 2095113 hsdS 4211489 hsdS Alcanivorax borkumensis SK2 type I restriction-modification system subunit S YP_693549.1 2093938 R 393595 CDS YP_693550.1 110834691 4211487 complement(2095110..2096711) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Type I restriction-modification system M subunit; High confidence in function and specificity; type I restriction-modification system, M subunit 2096711 hsdM 4211487 hsdM Alcanivorax borkumensis SK2 type I restriction-modification system, M subunit YP_693550.1 2095110 R 393595 CDS YP_693551.1 110834692 4212117 complement(2096712..2098490) 1 NC_008260.1 (DNA recombination protein, RmuC homolog) identified by match to PFAM protein family HMMPF02646 InterPro: DUF195; hypothetical protein 2098490 rmuC 4212117 rmuC Alcanivorax borkumensis SK2 hypothetical protein YP_693551.1 2096712 R 393595 CDS YP_693552.1 110834693 4211488 complement(2098522..2101893) 1 NC_008260.1 identified by sequencesimilarity; InterPro: DEAD/DEAH box helicase; High confidence in function and specificity; type I restriction-modification system, R subunit 2101893 hsdR 4211488 hsdR Alcanivorax borkumensis SK2 type I restriction-modification system, R subunit YP_693552.1 2098522 R 393595 CDS YP_693553.1 110834694 4212244 complement(2102158..2102970) 1 NC_008260.1 Conserved hypothetical protein; lipoprotein 2102970 4212244 ABO_1833 Alcanivorax borkumensis SK2 lipoprotein YP_693553.1 2102158 R 393595 CDS YP_693554.1 110834695 4212245 2103133..2104020 1 NC_008260.1 hypothetical protein 2104020 4212245 ABO_1834 Alcanivorax borkumensis SK2 hypothetical protein YP_693554.1 2103133 D 393595 CDS YP_693555.1 110834696 4212246 complement(2104814..2105173) 1 NC_008260.1 (conserved hypothetical protein) identified by match to PFAM protein family HMMPF00376 InterPro: Bacterial regulatory proteins MerR family; transcriptional regulator 2105173 4212246 ABO_1835 Alcanivorax borkumensis SK2 transcriptional regulator YP_693555.1 2104814 R 393595 CDS YP_693556.1 110834697 4212247 complement(2105154..2105456) 1 NC_008260.1 This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 2105456 ihfA 4212247 ihfA Alcanivorax borkumensis SK2 integration host factor subunit alpha YP_693556.1 2105154 R 393595 CDS YP_693557.1 110834698 4211603 complement(2105483..2107882) 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; phenylalanyl-tRNA synthetase subunit beta 2107882 pheT 4211603 pheT Alcanivorax borkumensis SK2 phenylalanyl-tRNA synthetase subunit beta YP_693557.1 2105483 R 393595 CDS YP_693558.1 110834699 4211602 complement(2107917..2108936) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00468 InterPro: Phenylalanyl-tRNA synthetase alpha subunit; High confidence in function and specificity; phenylalanyl-tRNA synthetase subunit alpha 2108936 pheS 4211602 pheS Alcanivorax borkumensis SK2 phenylalanyl-tRNA synthetase subunit alpha YP_693558.1 2107917 R 393595 CDS YP_693559.1 110834700 4212289 complement(2109193..2109552) 1 NC_008260.1 binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 2109552 rplT 4212289 rplT Alcanivorax borkumensis SK2 50S ribosomal protein L20 YP_693559.1 2109193 R 393595 CDS YP_693560.1 110834701 4212361 complement(2109578..2109772) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01632 InterPro: Ribosomal protein L35; High confidence in function and specificity; 50S ribosomal protein L35 2109772 rpmI 4212361 rpmI Alcanivorax borkumensis SK2 50S ribosomal protein L35 YP_693560.1 2109578 R 393595 CDS YP_693561.1 110834702 4211203 complement(2109811..2110371) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Initiation factor 3; High confidence in function and specificity; translation initiation factor IF-3 2110371 infC 4211203 infC Alcanivorax borkumensis SK2 translation initiation factor IF-3 YP_693561.1 2109811 R 393595 CDS YP_693562.1 110834703 4212248 2110700..2111146 1 NC_008260.1 transcriptional regulator MarR family identified by match to PFAM protein family HMMPF03551 InterPro: Bacterial regulatory protein MarR family; Family membership; MarR family transcriptional regulator 2111146 4212248 ABO_1842 Alcanivorax borkumensis SK2 MarR family transcriptional regulator YP_693562.1 2110700 D 393595 CDS YP_693563.1 110834704 4212249 2111202..2112437 1 NC_008260.1 monooxygenase, ,; Specificity unclear; monooxygenase 2112437 4212249 ABO_1843 Alcanivorax borkumensis SK2 monooxygenase YP_693563.1 2111202 D 393595 CDS YP_693564.1 110834705 4212250 2112434..2113630 1 NC_008260.1 (major facilitator family transporter) identified by match to PFAM protein family HMMPF03977; hypothetical protein 2113630 4212250 ABO_1844 Alcanivorax borkumensis SK2 hypothetical protein YP_693564.1 2112434 D 393595 CDS YP_693565.1 110834706 4211213 complement(2113916..2115367) 1 NC_008260.1 identified by sequence similarity; InterPro: Catalase; High confidence in function and specificity; catalase 2115367 katA 4211213 katA Alcanivorax borkumensis SK2 catalase YP_693565.1 2113916 R 393595 CDS YP_693566.1 110834707 4212251 complement(2115499..2115702) 1 NC_008260.1 hypothetical protein 2115702 4212251 ABO_1846 Alcanivorax borkumensis SK2 hypothetical protein YP_693566.1 2115499 R 393595 CDS YP_693567.1 110834708 4212252 complement(2116092..2117213) 1 NC_008260.1 (ABC transporter, ATP-binding protein, permease protein, ) identified by match to TIGR protein family HMMTIGR01291; Family membership; ABC transporter ATP-binding protein/permease 2117213 4212252 ABO_1847 Alcanivorax borkumensis SK2 ABC transporter ATP-binding protein/permease YP_693567.1 2116092 R 393595 CDS YP_693568.1 110834709 4212253 complement(2117217..2120000) 1 NC_008260.1 (ABC transporter, ATP-binding protein/permease protein, ) identified by match to PFAM protein family HMMPF03772 InterPro: AAA ATPase superfamily; Family membership; ABC transporter ATP-binding protein/permease 2120000 4212253 ABO_1848 Alcanivorax borkumensis SK2 ABC transporter ATP-binding protein/permease YP_693568.1 2117217 R 393595 CDS YP_693569.1 110834710 4212254 complement(2119997..2121103) 1 NC_008260.1 (HlyD family secretion protein) identified by match to TIGR protein family HMMTIGR01730 InterPro: HlyD family secretion protein Gram-negative bacteria produce a number of proteins which are secreted into the growth medium by a mechanism that does not require a cleaved N-terminal signal sequence. These proteins, while having different functions, require the help of two or more proteins for their secretion across the cell envelope. These secretion proteins include members belonging to the ABC transporter family (see the relevant entry IPR003439) and a protein belonging to a family which is currently composed the members:Hemolysin, Colicin V etc.; High confidence in function and specificity; HlyD family secretion protein 2121103 4212254 ABO_1849 Alcanivorax borkumensis SK2 HlyD family secretion protein YP_693569.1 2119997 R 393595 CDS YP_693570.1 110834711 4212661 complement(2121430..2123001) 1 NC_008260.1 contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase 2123001 guaA 4212661 guaA Alcanivorax borkumensis SK2 GMP synthase YP_693570.1 2121430 R 393595 CDS YP_693571.1 110834712 4212662 complement(2123189..2124670) 1 NC_008260.1 (inosine-5'-monophosphate dehydrogenase) identified by match to PFAM protein family HMMPF00478 InterPro: IMP dehydrogenase / GMP reductase; High confidence in function and specificity; inosine-5'-monophosphate dehydrogenase 2124670 guaB 4212662 guaB Alcanivorax borkumensis SK2 inosine-5'-monophosphate dehydrogenase YP_693571.1 2123189 R 393595 CDS YP_693572.1 110834713 4211779 2124842..2126188 1 NC_008260.1 identified by match to PFAM protein family HMMPF02601; High confidence in function and specificity; exodeoxyribonuclease VII large subunit 2126188 xseA 4211779 xseA Alcanivorax borkumensis SK2 exodeoxyribonuclease VII large subunit YP_693572.1 2124842 D 393595 CDS YP_693573.1 110834714 4212255 complement(2126145..2128085) 1 NC_008260.1 (sensor histidine kinase/response regulator, ) identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Family membership; sensor histidine kinase/response regulator 2128085 4212255 ABO_1853 Alcanivorax borkumensis SK2 sensor histidine kinase/response regulator YP_693573.1 2126145 R 393595 CDS YP_693574.1 110834715 4212256 complement(2128082..2128951) 1 NC_008260.1 hypothetical protein 2128951 4212256 ABO_1854 Alcanivorax borkumensis SK2 hypothetical protein YP_693574.1 2128082 R 393595 CDS YP_693575.1 110834716 4212257 complement(2128956..2131016) 1 NC_008260.1 (conserved hypothetical protein) identified by sequencesimilarity; hypothetical protein 2131016 4212257 ABO_1855 Alcanivorax borkumensis SK2 hypothetical protein YP_693575.1 2128956 R 393595 CDS YP_693576.1 110834717 4212258 complement(2131124..2132539) 1 NC_008260.1 (GTP-binding protein, ) identified by similary to Pfam family protein PF01926; High confidence in function and specificity; GTP-binding protein 2132539 4212258 ABO_1856 Alcanivorax borkumensis SK2 GTP-binding protein YP_693576.1 2131124 R 393595 CDS YP_693577.1 110834718 4212259 complement(2132642..2133784) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01011 InterPro: PQQ enzyme repeat; hypothetical protein 2133784 4212259 ABO_1857 Alcanivorax borkumensis SK2 hypothetical protein YP_693577.1 2132642 R 393595 CDS YP_693578.1 110834719 4212260 complement(2133785..2134408) 1 NC_008260.1 identified by sequence similarity; hypothetical protein 2134408 4212260 ABO_1858 Alcanivorax borkumensis SK2 hypothetical protein YP_693578.1 2133785 R 393595 CDS YP_693579.1 110834720 4211474 complement(2134589..2135857) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Histidyl-tRNA synthetase; High confidence in function and specificity; histidyl-tRNA synthetase 2135857 hisS 4211474 hisS Alcanivorax borkumensis SK2 histidyl-tRNA synthetase YP_693579.1 2134589 R 393595 CDS YP_693580.1 110834721 4211209 complement(2135943..2137061) 1 NC_008260.1 (1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphatesynthase) identified by sequence similarity; InterPro: GcpE protein .; High confidence in function and specificity; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 2137061 ispG 4211209 ispG Alcanivorax borkumensis SK2 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase YP_693580.1 2135943 R 393595 CDS YP_693581.1 110834722 4212261 complement(2137083..2137988) 1 NC_008260.1 hypothetical protein 2137988 4212261 ABO_1861 Alcanivorax borkumensis SK2 hypothetical protein YP_693581.1 2137083 R 393595 CDS YP_693582.1 110834723 4211618 complement(2137985..2138770) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00515 InterPro: TPR repeat; Family membership; type IV pili biogenesis protein PilF 2138770 pilF 4211618 pilF Alcanivorax borkumensis SK2 type IV pili biogenesis protein PilF YP_693582.1 2137985 R 393595 CDS YP_693583.1 110834724 4211435 complement(2138767..2139912) 1 NC_008260.1 Predicted Fe-S-cluster redox enzyme identified by match to PFAM protein family HMMPF04055, TIGR00048 InterPro: Conserved hypothetical protein 48; Fe-S-cluster redox protein 2139912 4211435 ABO_1863 Alcanivorax borkumensis SK2 Fe-S-cluster redox protein YP_693583.1 2138767 R 393595 CDS YP_693584.1 110834725 4211428 complement(2139996..2140427) 1 NC_008260.1 (nucleoside diphosphate kinase) identified by match to PFAM protein family HMMPF00334 InterPro: Nucleoside diphosphate kinase; High confidence in function and specificity; nucleoside-diphosphate kinase 2140427 ndk 4211428 ndk Alcanivorax borkumensis SK2 nucleoside-diphosphate kinase YP_693584.1 2139996 R 393595 CDS YP_693585.1 110834726 4211436 2140725..2142164 1 NC_008260.1 with SufCD activates cysteine desulfurase SufS; cysteine desulfurase 2142164 4211436 ABO_1865 Alcanivorax borkumensis SK2 cysteine desulfurase YP_693585.1 2140725 D 393595 CDS YP_693586.1 110834727 4212240 2142311..2143066 1 NC_008260.1 ABC-type transport system involved in Fe-S cluster assembly, ATPase component; High confidence in function and specificity; ABC transporter ATP-binding protein 2143066 aapB 4212240 aapB Alcanivorax borkumensis SK2 ABC transporter ATP-binding protein YP_693586.1 2142311 D 393595 CDS YP_693587.1 110834728 4211976 2143063..2144292 1 NC_008260.1 Conserved hypothetical protein, ABC transporter permease component, possibly involved in Fe-S cluster assembly; High confidence in function and specificity; ABC transporter permease 2144292 sufD 4211976 sufD Alcanivorax borkumensis SK2 ABC transporter permease YP_693587.1 2143063 D 393595 CDS YP_693588.1 110834729 4213649 2144292..2145500 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF00266; InterPro: Aminotransferase class-V; High confidence in function and specificity; cysteine sulfinate desulfinase 2145500 csdA 4213649 csdA Alcanivorax borkumensis SK2 cysteine sulfinate desulfinase YP_693588.1 2144292 D 393595 CDS YP_693589.1 110834730 4211204 2145736..2146095 1 NC_008260.1 identified by sequence similarity; InterPro: Hypothetical hesB/yadR/yfhF family; Family membership; iron-binding protein IscA 2146095 iscA 4211204 iscA Alcanivorax borkumensis SK2 iron-binding protein IscA YP_693589.1 2145736 D 393595 CDS YP_693590.1 110834731 4211437 2146115..2146657 1 NC_008260.1 Family membership; metal-sulfur cluster biosynthetic protein 2146657 4211437 ABO_1870 Alcanivorax borkumensis SK2 metal-sulfur cluster biosynthetic protein YP_693590.1 2146115 D 393595 CDS YP_693591.1 110834732 4211977 2146760..2147212 1 NC_008260.1 SufE protein probably involved in Fe-S center assembly; Family membership; Fe-S metabolism associated domain-containing protein 2147212 sufE 4211977 sufE Alcanivorax borkumensis SK2 Fe-S metabolism associated domain-containing protein YP_693591.1 2146760 D 393595 CDS YP_693592.1 110834733 4211205 complement(2147308..2148459) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM potein family HMMPF00266; InterPro: Aminotransferase class-V; High confidence in function and specificity; cysteine desulfurase 2148459 iscS 4211205 iscS Alcanivorax borkumensis SK2 cysteine desulfurase YP_693592.1 2147308 R 393595 CDS YP_693593.1 110834734 4212568 complement(2148516..2148980) 1 NC_008260.1 identified by match to PFAM protein family HMMPF02082 InterPro: Uncharacterized protein family UPF0074; Family membership; rrf2 family protein 2148980 rrf2 4212568 rrf2 Alcanivorax borkumensis SK2 rrf2 family protein YP_693593.1 2148516 R 393595 CDS YP_693594.1 110834735 4211438 2149699..2149998 1 NC_008260.1 hypothetical protein 2149998 4211438 ABO_1874 Alcanivorax borkumensis SK2 hypothetical protein YP_693594.1 2149699 D 393595 CDS YP_693595.1 110834736 4211439 2150008..2150463 1 NC_008260.1 Hypothetical protein; hypothetical protein 2150463 4211439 ABO_1875 Alcanivorax borkumensis SK2 hypothetical protein YP_693595.1 2150008 D 393595 CDS YP_693596.1 110834737 4211440 complement(2150520..2151308) 1 NC_008260.1 NAD-dependent protein deacetylases, SIR2 family; SIR2-like transcriptional silencer protein identified by match to PFAM protein family HMMPF02146; Family membership; SIR2 family protein 2151308 4211440 ABO_1876 Alcanivorax borkumensis SK2 SIR2 family protein YP_693596.1 2150520 R 393595 CDS YP_693597.1 110834738 4211441 complement(2151308..2151862) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00042 InterPro: Ham1 family; Family membership; Ham1 family protein 2151862 4211441 ABO_1877 Alcanivorax borkumensis SK2 Ham1 family protein YP_693597.1 2151308 R 393595 CDS YP_693598.1 110834739 4211442 complement(2151852..2152844) 1 NC_008260.1 conserved hypothetical protein distantly; hypothetical protein 2152844 4211442 ABO_1878 Alcanivorax borkumensis SK2 hypothetical protein YP_693598.1 2151852 R 393595 CDS YP_693599.1 110834740 4211443 complement(2155011..2155673) 1 NC_008260.1 identify by sequence similarity; hypothetical protein 2155673 4211443 ABO_1879 Alcanivorax borkumensis SK2 hypothetical protein YP_693599.1 2155011 R 393595 CDS YP_693600.1 110834741 4211444 complement(2156073..2156684) 1 NC_008260.1 hypothetical protein 2156684 4211444 ABO_1880 Alcanivorax borkumensis SK2 hypothetical protein YP_693600.1 2156073 R 393595 CDS YP_693601.1 110834742 4211445 complement(2156684..2157397) 1 NC_008260.1 (conserved hypothetical protein) identified by sequence similarity; hypothetical protein 2157397 4211445 ABO_1881 Alcanivorax borkumensis SK2 hypothetical protein YP_693601.1 2156684 R 393595 CDS YP_693602.1 110834743 4211446 complement(2157397..2158044) 1 NC_008260.1 LemA contains an amino terminal predicted transmembrane helix. It has been predicted that the small amino terminus is extracellular. The exact molecular function of this protein is uncertain.; Conserved hypothetical protein; LemA family protein 2158044 4211446 ABO_1882 Alcanivorax borkumensis SK2 LemA family protein YP_693602.1 2157397 R 393595 CDS YP_693603.1 110834744 4211447 complement(2158054..2158443) 1 NC_008260.1 (conserved hypothetical protein) identified by sequence similarity; hypothetical protein 2158443 4211447 ABO_1883 Alcanivorax borkumensis SK2 hypothetical protein YP_693603.1 2158054 R 393595 CDS YP_693604.1 110834745 4211448 2158476..2158871 1 NC_008260.1 hypothetical protein 2158871 4211448 ABO_1884 Alcanivorax borkumensis SK2 hypothetical protein YP_693604.1 2158476 D 393595 CDS YP_693605.1 110834746 4211449 2158910..2159317 1 NC_008260.1 conserved hypothetical protein; hypothetical protein 2159317 4211449 ABO_1885 Alcanivorax borkumensis SK2 hypothetical protein YP_693605.1 2158910 D 393595 CDS YP_693606.1 110834747 4211450 2159926..2160702 1 NC_008260.1 identified by match to PFAM protein family HMMPF01738 InterPro: Dienelactone hydrolase; Family membership; dienelactone hydrolase family protein 2160702 4211450 ABO_1886 Alcanivorax borkumensis SK2 dienelactone hydrolase family protein YP_693606.1 2159926 D 393595 CDS YP_693607.1 110834748 4211451 2161135..2162199 1 NC_008260.1 identified by sequence similarity; Specificity unclear; sulfonate ABC transporter periplasmic-binding protein 2162199 4211451 ABO_1887 Alcanivorax borkumensis SK2 sulfonate ABC transporter periplasmic-binding protein YP_693607.1 2161135 D 393595 CDS YP_693608.1 110834749 4211452 2162279..2163109 1 NC_008260.1 identified by sequence similarity; InterPro: Binding-protein-dependent transport systems inner membrane component; Specificity unclear; sulfonate ABC transporter permease 2163109 4211452 ABO_1888 Alcanivorax borkumensis SK2 sulfonate ABC transporter permease YP_693608.1 2162279 D 393595 CDS YP_693609.1 110834750 4211453 2163122..2163913 1 NC_008260.1 Specificity unclear; sulfonate ABC transporter ATP-binding protein 2163913 4211453 ABO_1889 Alcanivorax borkumensis SK2 sulfonate ABC transporter ATP-binding protein YP_693609.1 2163122 D 393595 CDS YP_693610.1 110834751 4213236 2163932..2164648 1 NC_008260.1 identified by match to PFAM protein family HMMPF00595; hypothetical protein 2164648 4213236 ABO_1890 Alcanivorax borkumensis SK2 hypothetical protein YP_693610.1 2163932 D 393595 CDS YP_693611.1 110834752 4213237 2164690..2165331 1 NC_008260.1 hypothetical protein 2165331 4213237 ABO_1891 Alcanivorax borkumensis SK2 hypothetical protein YP_693611.1 2164690 D 393595 CDS YP_693612.1 110834753 4211721 2165432..2169019 1 NC_008260.1 urea carboxylase; urease (ATP-hydrolysing); urea amidolyase/allophanate hydrolase [EC:6.3.4.6 3.5.1.54] identified by sequence similarity; InterPro: DUF183; Family membership; urea carboxylase 2169019 uahA 4211721 uahA Alcanivorax borkumensis SK2 urea carboxylase YP_693612.1 2165432 D 393595 CDS YP_693613.1 110834754 4213238 complement(2169751..2170023) 1 NC_008260.1 (gcd) (glucose dehydrogenase (pyrroloquinoline-quinone)) identified by match to PFAM protein family HMMPF01011; Hypothetical protein; hypothetical protein 2170023 4213238 ABO_1893 Alcanivorax borkumensis SK2 hypothetical protein YP_693613.1 2169751 R 393595 CDS YP_693614.1 110834755 4212192 2170157..2173066 1 NC_008260.1 transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA; ATP-dependent helicase HepA 2173066 hepA 4212192 hepA Alcanivorax borkumensis SK2 ATP-dependent helicase HepA YP_693614.1 2170157 D 393595 CDS YP_693615.1 110834756 4213239 2173069..2173737 1 NC_008260.1 (estB) identified by sequence similarity; InterPro: Phospholipase/Carboxylesterase; Family membership; phospholipase/carboxylesterase family protein 2173737 4213239 ABO_1895 Alcanivorax borkumensis SK2 phospholipase/carboxylesterase family protein YP_693615.1 2173069 D 393595 CDS YP_693616.1 110834757 4213240 2173920..2174372 1 NC_008260.1 (conserved hypothetical protein; hypothetical protein 2174372 4213240 ABO_1896 Alcanivorax borkumensis SK2 hypothetical protein YP_693616.1 2173920 D 393595 CDS YP_693617.1 110834758 4212354 complement(2174518..2175399) 1 NC_008260.1 identified by match to PFAM protein family HMMPF04238 InterPro: Cytochrome c oxidase subunit III; High confidence in function and specificity; cytochrome c oxidase subunit III 2175399 coxC 4212354 coxC Alcanivorax borkumensis SK2 cytochrome c oxidase subunit III YP_693617.1 2174518 R 393595 CDS YP_693618.1 110834759 4213657 complement(2175428..2176003) 1 NC_008260.1 identified by sequence similarity; Function unclear; cytochrome c oxidase assembly protein 2176003 ctaG 4213657 ctaG Alcanivorax borkumensis SK2 cytochrome c oxidase assembly protein YP_693618.1 2175428 R 393595 CDS YP_693619.1 110834760 4212352 complement(2176026..2177633) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00780 InterPro: Cytochrome c oxidase subunit I; High confidence in function and specificity; cytochrome c oxidase subunit I 2177633 coxA 4212352 coxA Alcanivorax borkumensis SK2 cytochrome c oxidase subunit I YP_693619.1 2176026 R 393595 CDS YP_693620.1 110834761 4212353 complement(2177648..2178856) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00034; High confidence in function and specificity; cytochrome c oxidase subunit II 2178856 coxB 4212353 coxB Alcanivorax borkumensis SK2 cytochrome c oxidase subunit II YP_693620.1 2177648 R 393595 CDS YP_693621.1 110834762 4213241 2179254..2179592 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 2179592 4213241 ABO_1901 Alcanivorax borkumensis SK2 hypothetical protein YP_693621.1 2179254 D 393595 CDS YP_693622.1 110834763 4213242 complement(2180158..2180430) 1 NC_008260.1 (conserved hypothetical protein) identified by sequencesimilarity; hypothetical protein 2180430 4213242 ABO_1902 Alcanivorax borkumensis SK2 hypothetical protein YP_693622.1 2180158 R 393595 CDS YP_693623.1 110834764 4213243 2180657..2181409 1 NC_008260.1 hypothetical protein 2181409 4213243 ABO_1903 Alcanivorax borkumensis SK2 hypothetical protein YP_693623.1 2180657 D 393595 CDS YP_693624.1 110834765 4213244 2181409..2182023 1 NC_008260.1 (Sco1/SenC family protein) identified by match to PFAM protein family HMMPF00578; hypothetical protein 2182023 4213244 ABO_1904 Alcanivorax borkumensis SK2 hypothetical protein YP_693624.1 2181409 D 393595 CDS YP_693625.1 110834766 4213656 2182032..2183102 1 NC_008260.1 identified by similarity to Pfam protein family PF02628.; High confidence in function and specificity; cytochrome c oxidase assembly protein 2183102 ctaA 4213656 ctaA Alcanivorax borkumensis SK2 cytochrome c oxidase assembly protein YP_693625.1 2182032 D 393595 CDS YP_693626.1 110834767 4211346 2183099..2184010 1 NC_008260.1 (UbiA prenyltransferase family, ) identified by sequence similarity; InterPro: UbiA prenyltransferase; Family membership; prenyltransferase family protein 2184010 idsA 4211346 idsA Alcanivorax borkumensis SK2 prenyltransferase family protein YP_693626.1 2183099 D 393595 CDS YP_693627.1 110834768 4213245 2184107..2184562 1 NC_008260.1 (membrane protein ) identified by sequence similarity; Function unclear; hypothetical protein 2184562 4213245 ABO_1907 Alcanivorax borkumensis SK2 hypothetical protein YP_693627.1 2184107 D 393595 CDS YP_693628.1 110834769 4213246 2184686..2185273 1 NC_008260.1 (ThiJ/PfpI family protein) identified by match to TIGR protein family HMMTIGR01382 conserved hypothetical protein with similarity to (ThiJ/PfpI family protein); hypothetical protein 2185273 4213246 ABO_1908 Alcanivorax borkumensis SK2 hypothetical protein YP_693628.1 2184686 D 393595 CDS YP_693629.1 110834770 4213247 2185286..2187181 1 NC_008260.1 (protease, ) identified by match to PFAM protein family HMMPF04066 InterPro: Peptidase family M48; Family membership; protease 2187181 4213247 ABO_1909 Alcanivorax borkumensis SK2 protease YP_693629.1 2185286 D 393595 CDS YP_693630.1 110834771 4213248 2187465..2187827 1 NC_008260.1 hypothetical protein 2187827 4213248 ABO_1910 Alcanivorax borkumensis SK2 hypothetical protein YP_693630.1 2187465 D 393595 CDS YP_693631.1 110834772 4213249 complement(2187895..2188941) 1 NC_008260.1 hypothetical protein 2188941 4213249 ABO_1911 Alcanivorax borkumensis SK2 hypothetical protein YP_693631.1 2187895 R 393595 CDS YP_693632.1 110834773 4213250 2189525..2189755 1 NC_008260.1 Region start changed from 2189147 to 2189525 (-378 bases); cold-shock domain-contain protein 2189755 4213250 ABO_1912 Alcanivorax borkumensis SK2 cold-shock domain-contain protein YP_693632.1 2189525 D 393595 CDS YP_693633.1 110834774 4213251 2189847..2191400 1 NC_008260.1 identified by match to TIGRFAM protein family HMMTIGR00813; InterPro: Sodium:solute symporter family; Family membership; sodium solute transporter family protein 2191400 4213251 ABO_1913 Alcanivorax borkumensis SK2 sodium solute transporter family protein YP_693633.1 2189847 D 393595 CDS YP_693634.1 110834775 4213252 complement(2191328..2191990) 1 NC_008260.1 High confidence in function and specificity; hypothetical protein 2191990 4213252 ABO_1914 Alcanivorax borkumensis SK2 hypothetical protein YP_693634.1 2191328 R 393595 CDS YP_693635.1 110834776 4213253 complement(2191980..2193290) 1 NC_008260.1 Conserved hypothetical protein, by combining results from PsiBlast SP, Blast2p vs KEGG, PsiBlast Putida, InterPro, Blast2p vs COG, TIGRFAM.; hypothetical protein 2193290 4213253 ABO_1915 Alcanivorax borkumensis SK2 hypothetical protein YP_693635.1 2191980 R 393595 CDS YP_693636.1 110834777 4213254 2193493..2194284 1 NC_008260.1 (conserved hypothetical protein) identified by sequencesimilarity; hypothetical protein 2194284 4213254 ABO_1916 Alcanivorax borkumensis SK2 hypothetical protein YP_693636.1 2193493 D 393595 CDS YP_693637.1 110834778 4211392 2194397..2195146 1 NC_008260.1 (plsC) identified by sequence similarity; InterPro: Phospholipid and glycerol acyltransferase (from motifs_6.msf); High confidence in function and specificity; 1-acyl-sn-glycerol-3-phosphate acyltransferase 2195146 plsC1 4211392 plsC1 Alcanivorax borkumensis SK2 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_693637.1 2194397 D 393595 CDS YP_693638.1 110834779 4211807 2195438..2196283 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity; short-chain dehydrogenase/reductase family protein 2196283 acdS 4211807 acdS Alcanivorax borkumensis SK2 short-chain dehydrogenase/reductase family protein YP_693638.1 2195438 D 393595 CDS YP_693639.1 110834780 4213255 2196355..2196945 1 NC_008260.1 (heavy metal RND efflux outer membrane proteinCzcC family) identified by sequencesimilarity; hypothetical protein 2196945 4213255 ABO_1919 Alcanivorax borkumensis SK2 hypothetical protein YP_693639.1 2196355 D 393595 CDS YP_693640.1 110834781 4212040 2197346..2198614 1 NC_008260.1 identified by sequencesimilarity; InterPro: DEAD/DEAH box helicase; High confidence in function and specificity; ATP-dependent RNA helicase RhlB 2198614 rhlB 4212040 rhlB Alcanivorax borkumensis SK2 ATP-dependent RNA helicase RhlB YP_693640.1 2197346 D 393595 CDS YP_693641.1 110834782 4211738 2198617..2198937 1 NC_008260.1 identified by match to PFAM protein family HMMPF00581 InterPro: Rhodanese/cdc25 fold; Family membership; rhodanese domain-containing protein 2198937 4211738 ABO_1921 Alcanivorax borkumensis SK2 rhodanese domain-containing protein YP_693641.1 2198617 D 393595 CDS YP_693642.1 110834783 4211739 complement(2199089..2199772) 1 NC_008260.1 Outer membrane protein W precursor., OmpW family; Specificity unclear; Outer membrane protein W 2199772 4211739 ABO_1922 Alcanivorax borkumensis SK2 Outer membrane protein W YP_693642.1 2199089 R 393595 CDS YP_693643.1 110834784 4211740 2200389..2201390 1 NC_008260.1 hypothetical protein 2201390 4211740 ABO_1923 Alcanivorax borkumensis SK2 hypothetical protein YP_693643.1 2200389 D 393595 CDS YP_693644.1 110834785 4211608 complement(2201527..2202993) 1 NC_008260.1 identified by match to PFAM protein family HMMPF02562 InterPro: PhoH-like protein; Specificity unclear; PhoH family protein 2202993 phoH1 4211608 phoH1 Alcanivorax borkumensis SK2 PhoH family protein YP_693644.1 2201527 R 393595 CDS YP_693645.1 110834786 4211741 complement(2203179..2203280) 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2203280 4211741 ABO_1925 Alcanivorax borkumensis SK2 hypothetical protein YP_693645.1 2203179 R 393595 CDS YP_693646.1 110834787 4211742 2203343..2203819 1 NC_008260.1 hypothetical protein 2203819 4211742 ABO_1926 Alcanivorax borkumensis SK2 hypothetical protein YP_693646.1 2203343 D 393595 CDS YP_693647.1 110834788 4211743 complement(2203719..2204447) 1 NC_008260.1 hypothetical protein 2204447 4211743 ABO_1927 Alcanivorax borkumensis SK2 hypothetical protein YP_693647.1 2203719 R 393595 CDS YP_693648.1 110834789 4211744 2204727..2205773 1 NC_008260.1 hypothetical protein 2205773 4211744 ABO_1928 Alcanivorax borkumensis SK2 hypothetical protein YP_693648.1 2204727 D 393595 CDS YP_693649.1 110834790 4211745 2205879..2206361 1 NC_008260.1 (phaI) (ring-hydroxylation complex protein 4) identified by sequence similarity; hypothetical protein 2206361 4211745 ABO_1929 Alcanivorax borkumensis SK2 hypothetical protein YP_693649.1 2205879 D 393595 CDS YP_693650.1 110834791 4211746 2206576..2207289 1 NC_008260.1 (transporter MgtC family) identified by sequencesimilarity; hypothetical protein 2207289 4211746 ABO_1930 Alcanivorax borkumensis SK2 hypothetical protein YP_693650.1 2206576 D 393595 CDS YP_693651.1 110834792 4211747 complement(2207481..2208428) 1 NC_008260.1 (oxidoreductase FMN-binding) identified by match to TIGR protein family HMMTIGR00137; Function unclear; hypothetical protein 2208428 4211747 ABO_1931 Alcanivorax borkumensis SK2 hypothetical protein YP_693651.1 2207481 R 393595 CDS YP_693652.1 110834793 4211748 complement(2208495..2208947) 1 NC_008260.1 hypothetical protein 2208947 4211748 ABO_1932 Alcanivorax borkumensis SK2 hypothetical protein YP_693652.1 2208495 R 393595 CDS YP_693653.1 110834794 4211749 complement(2208928..2209551) 1 NC_008260.1 (Sco1/SenC family protein) identifiedby sequence similarity; Family membership; Sco1/SenC family protein 2209551 4211749 ABO_1933 Alcanivorax borkumensis SK2 Sco1/SenC family protein YP_693653.1 2208928 R 393595 CDS YP_693654.1 110834795 4211750 2209581..2210918 1 NC_008260.1 catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 2210918 4211750 ABO_1934 Alcanivorax borkumensis SK2 (dimethylallyl)adenosine tRNA methylthiotransferase YP_693654.1 2209581 D 393595 CDS YP_693655.1 110834796 4211607 2211525..2212529 1 NC_008260.1 identified by match to PFAM protein family HMMPF02562 InterPro: PhoH-like protein; High confidence in function and specificity; PhoH family protein 2212529 phoH 4211607 phoH Alcanivorax borkumensis SK2 PhoH family protein YP_693655.1 2211525 D 393595 CDS YP_693656.1 110834797 4211751 2212501..2213028 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00043 InterPro: Uncharacterized protein family UPF0054; hypothetical protein 2213028 4211751 ABO_1936 Alcanivorax borkumensis SK2 hypothetical protein YP_693656.1 2212501 D 393595 CDS YP_693657.1 110834798 4211752 2213028..2213915 1 NC_008260.1 identified by sequencesimilarity; InterPro: CBS domain; Function unclear; metal ion transporter 2213915 4211752 ABO_1937 Alcanivorax borkumensis SK2 metal ion transporter YP_693657.1 2213028 D 393595 CDS YP_693658.1 110834799 4211753 2213881..2215269 1 NC_008260.1 hypothetical protein 2215269 4211753 ABO_1938 Alcanivorax borkumensis SK2 hypothetical protein YP_693658.1 2213881 D 393595 CDS YP_693659.1 110834800 4211754 complement(2215347..2216723) 1 NC_008260.1 InterPro: B-box zinc finger domain; hypothetical protein 2216723 4211754 ABO_1939 Alcanivorax borkumensis SK2 hypothetical protein YP_693659.1 2215347 R 393595 CDS YP_693660.1 110834801 4211755 2217027..2218517 1 NC_008260.1 (cutE) identified by match to TIGR protein family HMMTIGR00546 InterPro: Apolipoprotein N-acyltransferase; Hypothetical protein; apolipoprotein N-acyltransferase 2218517 4211755 ABO_1940 Alcanivorax borkumensis SK2 apolipoprotein N-acyltransferase YP_693660.1 2217027 D 393595 CDS YP_693661.1 110834802 4211756 2218599..2219465 1 NC_008260.1 identified by match to PFAM protein family HMMPF00753; Family membership; metallo-beta-lactamase family protein 2219465 4211756 ABO_1941 Alcanivorax borkumensis SK2 metallo-beta-lactamase family protein YP_693661.1 2218599 D 393595 CDS YP_693662.1 110834803 4212301 2219470..2220705 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 2220705 4212301 ABO_1942 Alcanivorax borkumensis SK2 hypothetical protein YP_693662.1 2219470 D 393595 CDS YP_693663.1 110834804 4211979 2220718..2222490 1 NC_008260.1 Sulphate anion transporter, Sulfate transporter family, sulP: sulfate permease; Conserved hypothetical protein; sulfate transporter 2222490 sulP 4211979 sulP Alcanivorax borkumensis SK2 sulfate transporter YP_693663.1 2220718 D 393595 CDS YP_693664.1 110834805 4212302 2222514..2222942 1 NC_008260.1 Uncharacterized protein conserved in bacteria InterPRO: Protein of unknown function (DUF442); hypothetical protein 2222942 4212302 ABO_1944 Alcanivorax borkumensis SK2 hypothetical protein YP_693664.1 2222514 D 393595 CDS YP_693665.1 110834806 4211980 2222947..2224686 1 NC_008260.1 Sulfate transporter 1.1 (High-affinity sulfate transporter 1) (Hst1At) (AST101)., Sulphate anion transporter, Sulfate transporter family, TIGRFAM:sulP: sulfate permease; High confidence in function and specificity; sulfate transporter 2224686 sulP 4211980 sulP Alcanivorax borkumensis SK2 sulfate transporter YP_693665.1 2222947 D 393595 CDS YP_693666.1 110834807 4212303 complement(2224720..2225331) 1 NC_008260.1 identified by match to PFAM protein family HMMPF02698 InterPro: Domain of unknown function DUF218; hypothetical protein 2225331 4212303 ABO_1946 Alcanivorax borkumensis SK2 hypothetical protein YP_693666.1 2224720 R 393595 CDS YP_693667.1 110834808 4211542 2225504..2227972 1 NC_008260.1 (isoleucyl-tRNA synthetase) identified by sequencesimilarity; InterPro: Leucyl-tRNA synthetase; High confidence in function and specificity; leucine-tRNA synthetase 2227972 leuS 4211542 leuS Alcanivorax borkumensis SK2 leucine-tRNA synthetase YP_693667.1 2225504 D 393595 CDS YP_693668.1 110834809 4212108 2228137..2228631 1 NC_008260.1 Function unclear; rare lipoprotein B 2228631 rlpB 4212108 rlpB Alcanivorax borkumensis SK2 rare lipoprotein B YP_693668.1 2228137 D 393595 CDS YP_693669.1 110834810 4211478 2228631..2229644 1 NC_008260.1 identified by sequencesimilarity; High confidence in function and specificity; DNA polymerase III subunit delta 2229644 holA 4211478 holA Alcanivorax borkumensis SK2 DNA polymerase III subunit delta YP_693669.1 2228631 D 393595 CDS YP_693670.1 110834811 4212304 2229940..2230800 1 NC_008260.1 hypothetical protein 2230800 4212304 ABO_1950 Alcanivorax borkumensis SK2 hypothetical protein YP_693670.1 2229940 D 393595 CDS YP_693671.1 110834812 4211219 2231409..2232680 1 NC_008260.1 (gamma-glutamyl phosphate reductase, glutamate-5-semialdehyde dehydrogenase, glutamyl-gamma-semialdehyde dehydrogenase) identified by sequence similarity; InterPro: Aldehyde dehydrogenase family; High confidence in function and specificity; gamma-glutamyl phosphate reductase 2232680 proA 4211219 proA Alcanivorax borkumensis SK2 gamma-glutamyl phosphate reductase YP_693671.1 2231409 D 393595 CDS YP_693672.1 110834813 4212305 2232731..2233408 1 NC_008260.1 Probable nicotinate-nucleotide adenylyltransferase (Deamido-NAD(+) pyrophosphorylase) (Deamido-NAD(+) diphosphorylase) (Nicotinate mononucleotide adenylyltransferase) (NaMN adenylyltransferase) TIGR00482; InterPro: Cytidylyltransferase; Conserved hypothetical protein; nicotinate-nucleotide adenylyltransferase 2233408 4212305 ABO_1952 Alcanivorax borkumensis SK2 nicotinate-nucleotide adenylyltransferase YP_693672.1 2232731 D 393595 CDS YP_693673.1 110834814 4212306 2233415..2233777 1 NC_008260.1 identified by match to PFAM protein family HMMPF02410; Family membership; hypothetical protein 2233777 4212306 ABO_1953 Alcanivorax borkumensis SK2 hypothetical protein YP_693673.1 2233415 D 393595 CDS YP_693674.1 110834815 4212307 2233781..2234263 1 NC_008260.1 (conserved hypothetical protein TIGR00246) identified by match to PFAM protein family HMMPF02590 InterPro: DUF163; hypothetical protein 2234263 4212307 ABO_1954 Alcanivorax borkumensis SK2 hypothetical protein YP_693674.1 2233781 D 393595 CDS YP_693675.1 110834816 4211366 2234508..2236424 1 NC_008260.1 MrdA penicillin-binding protein 2, ,InterPro: Penicillin binding protein transpeptidase domain; High confidence in function and specificity; penicillin-binding protein 2 2236424 mrdA 4211366 mrdA Alcanivorax borkumensis SK2 penicillin-binding protein 2 YP_693675.1 2234508 D 393595 CDS YP_693676.1 110834817 4212171 2236421..2237566 1 NC_008260.1 identified by sequence similarity; InterPro: Cell cycle proteins; High confidence in function and specificity; rod-shape-determining protein RodA 2237566 rodA 4212171 rodA Alcanivorax borkumensis SK2 rod-shape-determining protein RodA YP_693676.1 2236421 D 393595 CDS YP_693677.1 110834818 4211588 2237615..2238730 1 NC_008260.1 identified by sequencesimilarity; murein-degrading enzyme. catalyzes the cleavage of the glycosidic bonds between n-acetylmuramic acid and n-acetylglucosamine residues in peptidoglycan. may play a role in recycling of muropeptides during cell elongation and/or cell division.; High confidence in function and specificity; membrane-bound lytic murein transglycosylase B 2238730 mltB 4211588 mltB Alcanivorax borkumensis SK2 membrane-bound lytic murein transglycosylase B YP_693677.1 2237615 D 393595 CDS YP_693678.1 110834819 4212107 2238727..2239656 1 NC_008260.1 identified by sequencesimilarity; This is a family of bacterial lipoproteins. The function of RlpA is not well understood, but it has been shown to act as a prc mutant suppressor in Escherichia coli [MEDLINE:96165273]. This family contains a conserved region in the middle of RlpA.; Function unclear; lipoprotein, rare lipoprotein A family lipoprotein 2239656 rlpA 4212107 rlpA Alcanivorax borkumensis SK2 lipoprotein, rare lipoprotein A family lipoprotein YP_693678.1 2238727 D 393595 CDS YP_693679.1 110834820 4213282 2239886..2241046 1 NC_008260.1 (D-alanyl-D-alanine carboxypeptidase) identified by sequencesimilarity; InterPro: D-alanyl-D-alanine carboxypeptidase 1 (S11) family; High confidence in function and specificity; D-alanyl-D-alanine-carboxypeptidase 2241046 dacA 4213282 dacA Alcanivorax borkumensis SK2 D-alanyl-D-alanine-carboxypeptidase YP_693679.1 2239886 D 393595 CDS YP_693680.1 110834821 4213291 2241081..2241965 1 NC_008260.1 (D-alanine aminotransferase, D-aspartate aminotransferase, D-amino acid aminotransferase, D-amino acid transaminase) identified by sequence similarity; identified by match to PFAM protein family HMMPF01063 InterPro: Aminotransferases class-IV; High confidence in function and specificity; d-alanine aminotransferase 2241965 dat 4213291 dat Alcanivorax borkumensis SK2 d-alanine aminotransferase YP_693680.1 2241081 D 393595 CDS YP_693681.1 110834822 4212308 2241978..2242247 1 NC_008260.1 hypothetical protein 2242247 4212308 ABO_1961 Alcanivorax borkumensis SK2 hypothetical protein YP_693681.1 2241978 D 393595 CDS YP_693682.1 110834823 4212309 2242443..2242757 1 NC_008260.1 hypothetical protein 2242757 4212309 ABO_1962 Alcanivorax borkumensis SK2 hypothetical protein YP_693682.1 2242443 D 393595 CDS YP_693683.1 110834824 4211550 2242878..2243618 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00214; High confidence in function and specificity; lipoyl-[acyl-carrier protein]-protein-n-lipoyltransferase 2243618 lipB 4211550 lipB Alcanivorax borkumensis SK2 lipoyl-[acyl-carrier protein]-protein-n-lipoyltransferase YP_693683.1 2242878 D 393595 CDS YP_693684.1 110834825 4211549 2243677..2244654 1 NC_008260.1 catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 2244654 lipA 4211549 lipA Alcanivorax borkumensis SK2 lipoyl synthase YP_693684.1 2243677 D 393595 CDS YP_693685.1 110834826 4213283 2244808..2246316 1 NC_008260.1 (D-alanyl-D-alanine carboxypeptidase) identified by match to PFAM protein family HMMPF02113 InterPro: D-Ala-D-Ala carboxypeptidase 3 (S13) family; High confidence in function and specificity; D-alanyl-D-alanine-carboxypeptidase 2246316 dacB 4213283 dacB Alcanivorax borkumensis SK2 D-alanyl-D-alanine-carboxypeptidase YP_693685.1 2244808 D 393595 CDS YP_693686.1 110834827 4212310 2246518..2246952 1 NC_008260.1 hypothetical protein 2246952 4212310 ABO_1966 Alcanivorax borkumensis SK2 hypothetical protein YP_693686.1 2246518 D 393595 CDS YP_693687.1 110834828 4213026 2247307..2247978 1 NC_008260.1 identified by match to PFAM protein family HMMPF01618 InterPro: MotA/TolQ/ExbB proton channel family; High confidence in function and specificity; MotA/TolQ/ExbB proton channel family protein 2247978 exbB2 4213026 exbB2 Alcanivorax borkumensis SK2 MotA/TolQ/ExbB proton channel family protein YP_693687.1 2247307 D 393595 CDS YP_693688.1 110834829 4213028 2247968..2248348 1 NC_008260.1 identified by sequence similarity InterPro: Biopolymer transport protein ExbD/TolR; Function unclear; ferric siderophore transport system inner membrane protein E 2248348 exbD2 4213028 exbD2 Alcanivorax borkumensis SK2 ferric siderophore transport system inner membrane protein E YP_693688.1 2247968 D 393595 CDS YP_693689.1 110834830 4213029 2248345..2248779 1 NC_008260.1 identified by sequence similarity InterPro: Biopolymer transport protein ExbD/TolR; Family membership; ferric siderophore transport system inner membrane protein E 2248779 exbD3 4213029 exbD3 Alcanivorax borkumensis SK2 ferric siderophore transport system inner membrane protein E YP_693689.1 2248345 D 393595 CDS YP_693690.1 110834831 4211919 2248776..2249504 1 NC_008260.1 (tonB) (ferric siderophore transport system periplasmicbinding protein TonB) identified by sequence similarity; InterPro: Proline-rich region; High confidence in function and specificity; ferric siderophore transport system periplasmic binding protein 2249504 tonB2 4211919 tonB2 Alcanivorax borkumensis SK2 ferric siderophore transport system periplasmic binding protein YP_693690.1 2248776 D 393595 CDS YP_693691.1 110834832 4212311 2249716..2250384 1 NC_008260.1 (conserved hypothetical protein); Family membership; hypothetical protein 2250384 4212311 ABO_1971 Alcanivorax borkumensis SK2 hypothetical protein YP_693691.1 2249716 D 393595 CDS YP_693692.1 110834833 4212312 complement(2250458..2251060) 1 NC_008260.1 (aromatic acid decarboxylase, ) identified by match to PFAM protein family HMMPF02441; Family membership; aromatic acid decarboxylase 2251060 4212312 ABO_1972 Alcanivorax borkumensis SK2 aromatic acid decarboxylase YP_693692.1 2250458 R 393595 CDS YP_693693.1 110834834 4212313 complement(2251057..2251515) 1 NC_008260.1 hypothetical protein 2251515 4212313 ABO_1973 Alcanivorax borkumensis SK2 hypothetical protein YP_693693.1 2251057 R 393595 CDS YP_693694.1 110834835 4211587 complement(2251683..2253035) 1 NC_008260.1 (mpl) (UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase) identified by match to PFAM protein family HMMPF01225 InterPro: Cytoplasmic peptidoglycan synthetases N-terminal; High confidence in function and specificity; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diamino 2253035 mlp 4211587 mlp Alcanivorax borkumensis SK2 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diamino YP_693694.1 2251683 R 393595 CDS YP_693695.1 110834836 4211548 2253418..2254380 1 NC_008260.1 identified by sequencesimilarity; InterPro: Esterase/lipase/thioesterase family active site; High confidence in function and specificity; lipase 2254380 lip 4211548 lip Alcanivorax borkumensis SK2 lipase YP_693695.1 2253418 D 393595 CDS YP_693696.1 110834837 4211454 2254437..2255447 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; lipase foldase 2255447 lipH 4211454 lipH Alcanivorax borkumensis SK2 lipase foldase YP_693696.1 2254437 D 393595 CDS YP_693697.1 110834838 4212314 complement(2255622..2255951) 1 NC_008260.1 identified by sequencesimilarity; Conserved hypothetical protein; hypothetical protein 2255951 4212314 ABO_1977 Alcanivorax borkumensis SK2 hypothetical protein YP_693697.1 2255622 R 393595 CDS YP_693698.1 110834839 4212482 complement(2255969..2257198) 1 NC_008260.1 formamidase (EC 3.5.1.49) (formamide amidohydrolase) InterPro: Acetamidase/Formamidase; High confidence in function and specificity; formamidase 2257198 fmdA 4212482 fmdA Alcanivorax borkumensis SK2 formamidase YP_693698.1 2255969 R 393595 CDS YP_693699.1 110834840 4212315 complement(2263548..2264585) 1 NC_008260.1 (chaperone-associated ATPase, ) identified by match to PFAM protein family HMMPF02861 InterPro: AAA ATPase superfamily; High confidence in function and specificity; chaperone-associated ATPase 2264585 4212315 ABO_1979 Alcanivorax borkumensis SK2 chaperone-associated ATPase YP_693699.1 2263548 R 393595 CDS YP_693700.1 110834841 4211291 complement(2264582..2265628) 1 NC_008260.1 aliphatic amidase; catalyzes the hydrolysis of short-chain aliphatic amides to their organic acids and can also transfer the acyl moiety of short-chain amides to hydroxylamine to form hydroxamates; acylamide amidohydrolase 2265628 amiE 4211291 amiE Alcanivorax borkumensis SK2 acylamide amidohydrolase YP_693700.1 2264582 R 393595 CDS YP_693701.1 110834842 4212316 complement(2265673..2266371) 1 NC_008260.1 (amino acid ABC transporter, ATP-binding protein, ) identified by sequence similarity and by match to PFAM protein family HMMPF00005; InterPro: AAA ATPase superfamily; Specificity unclear; amino acid ABC transporter ATP-binding protein 2266371 4212316 ABO_1981 Alcanivorax borkumensis SK2 amino acid ABC transporter ATP-binding protein YP_693701.1 2265673 R 393595 CDS YP_693702.1 110834843 4211455 complement(2266418..2267167) 1 NC_008260.1 (branched-chain amino acid ABC transporter, ATP-binding protein) identified by sequence similarity and by match to PFAM protein family HMMPF00005; InterPro: AAA ATPase superfamily; High confidence in function and specificity; branched-chain amino acid ABC transporter ATP-binding prote 2267167 livG 4211455 livG Alcanivorax borkumensis SK2 branched-chain amino acid ABC transporter ATP-binding prote YP_693702.1 2266418 R 393595 CDS YP_693703.1 110834844 4212317 complement(2267164..2268306) 1 NC_008260.1 (branched-chain amino acid ABC transporter,permease protein) identified by sequence similarity and by match to PFAM protein family HMMPF02653; InterPro: Binding-system dependent bacterial transporters (araH livH/limM families); Family membership; branched-chain amino acid ABC transporter permease 2268306 4212317 ABO_1983 Alcanivorax borkumensis SK2 branched-chain amino acid ABC transporter permease YP_693703.1 2267164 R 393595 CDS YP_693704.1 110834845 4212318 complement(2268316..2269242) 1 NC_008260.1 identified by match to PFAM protein family HMMPF02653; InterPro: Binding-system dependent bacterial transporters (araH livH/limM families); Family membership; branched-chain amino acid ABC transporter permease 2269242 4212318 ABO_1984 Alcanivorax borkumensis SK2 branched-chain amino acid ABC transporter permease YP_693704.1 2268316 R 393595 CDS YP_693705.1 110834846 4212319 complement(2269340..2270596) 1 NC_008260.1 (ABC transporter, periplasmic substrate-binding protein ) identified by sequence similarity; Family membership; ABC transporter periplasmic substrate-binding protein 2270596 4212319 ABO_1985 Alcanivorax borkumensis SK2 ABC transporter periplasmic substrate-binding protein YP_693705.1 2269340 R 393595 CDS YP_693706.1 110834847 4212320 2270797..2274231 1 NC_008260.1 unknown EC_number 21.7.3.11; (two-component sensor histidine kinase protein, ) identified by match to PFAM protein family HMMPF03596 InterPro: Permeases for cytosine/purines uracil thiamine allantoin; Family membership; two-component sensor histidine kinase protein 2274231 4212320 ABO_1986 Alcanivorax borkumensis SK2 two-component sensor histidine kinase protein YP_693706.1 2270797 D 393595 CDS YP_693707.1 110834848 4211469 2274228..2275133 1 NC_008260.1 identified by match to PFAM protein family HMMPF00072 InterPro: Response regulator receiver domain; High confidence in function and specificity; LuxR family transcriptional regulator 2275133 luxR 4211469 luxR Alcanivorax borkumensis SK2 LuxR family transcriptional regulator YP_693707.1 2274228 D 393595 CDS YP_693708.1 110834849 4212047 complement(2275127..2275651) 1 NC_008260.1 hypothetical protein 2275651 4212047 ABO_1988 Alcanivorax borkumensis SK2 hypothetical protein YP_693708.1 2275127 R 393595 CDS YP_693709.1 110834850 4211323 2275917..2277179 1 NC_008260.1 catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 2277179 pfkA 4211323 pfkA Alcanivorax borkumensis SK2 6-phosphofructokinase YP_693709.1 2275917 D 393595 CDS YP_693710.1 110834851 4211730 complement(2277338..2278654) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00860 InterPro: Xanthine/uracil permeases family; High confidence in function and specificity; uracil transporter 2278654 uraA 4211730 uraA Alcanivorax borkumensis SK2 uracil transporter YP_693710.1 2277338 R 393595 CDS YP_693711.1 110834852 4211728 complement(2278685..2279341) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Phosphoribosyl transferase; Family membership; uracil phosphoribosyltransferase 2279341 upp 4211728 upp Alcanivorax borkumensis SK2 uracil phosphoribosyltransferase YP_693711.1 2278685 R 393595 CDS YP_693712.1 110834853 4212048 complement(2279973..2281046) 1 NC_008260.1 (ATP-dependent RNA helicase DEAD box family) identified by match to PFAM protein family HMMPF00271 InterPro: peptidoglycan binding domain 1; hypothetical protein 2281046 4212048 ABO_1992 Alcanivorax borkumensis SK2 hypothetical protein YP_693712.1 2279973 R 393595 CDS YP_693713.1 110834854 4212049 2281549..2281917 1 NC_008260.1 identified by similarity to PFAMB, PB095705 PB094266 PB093724 PB092780 PB092388 PB091758 PB086012 PB074034 PB071888 PB045826 PB027182 PB012820 PB012628 PB009308 PB006481; InterPro: Rhodanese/cdc25 fold; Family membership; rhodanese domain-containing protein 2281917 4212049 ABO_1993 Alcanivorax borkumensis SK2 rhodanese domain-containing protein YP_693713.1 2281549 D 393595 CDS YP_693714.1 110834855 4212269 2282069..2282599 1 NC_008260.1 (inorganic pyrophosphatase) identified by sequencesimilarity; InterPro: Inorganic pyrophosphatase belongs to the ppase family; High confidence in function and specificity; inorganic diphosphatase 2282599 ppa 4212269 ppa Alcanivorax borkumensis SK2 inorganic diphosphatase YP_693714.1 2282069 D 393595 CDS YP_693715.1 110834856 4212050 complement(2282792..2283820) 1 NC_008260.1 Transcriptional regulator, AraC family InterPro: AraC type helix-turn-helix HTH reporting nucleic acid binding motif; Family membership; AraC family transcriptional regulator 2283820 4212050 ABO_1995 Alcanivorax borkumensis SK2 AraC family transcriptional regulator YP_693715.1 2282792 R 393595 CDS YP_693716.1 110834857 4212051 2283961..2284839 1 NC_008260.1 hypothetical protein 2284839 4212051 ABO_1996 Alcanivorax borkumensis SK2 hypothetical protein YP_693716.1 2283961 D 393595 CDS YP_693717.1 110834858 4212052 complement(2284939..2285658) 1 NC_008260.1 (hypothetical protein) identified by sequence similarity; InterPro: SAM (and some other nucleotide) binding motif; hypothetical protein 2285658 4212052 ABO_1997 Alcanivorax borkumensis SK2 hypothetical protein YP_693717.1 2284939 R 393595 CDS YP_693718.1 110834859 4211200 complement(2285585..2286316) 1 NC_008260.1 identify by sequence similarity; High confidence in function and specificity; InaA protein 2286316 inaA 4211200 inaA Alcanivorax borkumensis SK2 InaA protein YP_693718.1 2285585 R 393595 CDS YP_693719.1 110834860 4212053 complement(2286548..2287603) 1 NC_008260.1 Hypothetical protein; hypothetical protein 2287603 4212053 ABO_1999 Alcanivorax borkumensis SK2 hypothetical protein YP_693719.1 2286548 R 393595 CDS YP_693720.1 110834861 4212054 complement(2287581..2288924) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00512 InterPro: Histidine kinase C-terminal; Family membership; sensor histidine kinase 2288924 4212054 ABO_2000 Alcanivorax borkumensis SK2 sensor histidine kinase YP_693720.1 2287581 R 393595 CDS YP_693721.1 110834862 4212055 complement(2288921..2289586) 1 NC_008260.1 (Transcriptional regulatory protein, ) identified by match to TIGR protein family HMMTIGR01387 InterPro: Response regulator receiver domain; Family membership; transcriptional regulatory protein 2289586 4212055 ABO_2001 Alcanivorax borkumensis SK2 transcriptional regulatory protein YP_693721.1 2288921 R 393595 CDS YP_693722.1 110834863 4213475 complement(2289567..2290472) 1 NC_008260.1 identified by sequencesimilarity; InterPro: ApbE family; Family membership; thiamine biosynthesis lipoprotein 2290472 apbE 4213475 apbE Alcanivorax borkumensis SK2 thiamine biosynthesis lipoprotein YP_693722.1 2289567 R 393595 CDS YP_693723.1 110834864 4212056 complement(2290492..2291079) 1 NC_008260.1 hypothetical protein 2291079 4212056 ABO_2003 Alcanivorax borkumensis SK2 hypothetical protein YP_693723.1 2290492 R 393595 CDS YP_693724.1 110834865 4212057 complement(2291097..2291792) 1 NC_008260.1 hypothetical protein 2291792 4212057 ABO_2004 Alcanivorax borkumensis SK2 hypothetical protein YP_693724.1 2291097 R 393595 CDS YP_693725.1 110834866 4212058 complement(2291758..2291988) 1 NC_008260.1 hypothetical protein 2291988 4212058 ABO_2005 Alcanivorax borkumensis SK2 hypothetical protein YP_693725.1 2291758 R 393595 CDS YP_693726.1 110834867 4212059 complement(2291985..2292428) 1 NC_008260.1 (thioredoxin family protein, ) identified by sequence similarity; InterPro: Thioredoxin; High confidence in function and specificity; thioredoxin 2292428 4212059 ABO_2006 Alcanivorax borkumensis SK2 thioredoxin YP_693726.1 2291985 R 393595 CDS YP_693727.1 110834868 4211409 2292579..2294459 1 NC_008260.1 identified by match to PFAM protein family HMMPF00085 InterPro: Cytochrome c biogenesis protein transmembrane region; High confidence in function and specificity; thiol:disulfide interchange protein DsbD 2294459 dsbD 4211409 dsbD Alcanivorax borkumensis SK2 thiol:disulfide interchange protein DsbD YP_693727.1 2292579 D 393595 CDS YP_693728.1 110834869 4213829 2294698..2295180 1 NC_008260.1 catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 2295180 aroQ 4213829 aroQ Alcanivorax borkumensis SK2 3-dehydroquinate dehydratase YP_693728.1 2294698 D 393595 CDS YP_693729.1 110834870 4211798 2295183..2295635 1 NC_008260.1 identified by sequence similarity; InterPro: Acetyl-CoA biotin carboxyl carrier protein; Hypothetical protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 2295635 accB 4211798 accB Alcanivorax borkumensis SK2 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_693729.1 2295183 D 393595 CDS YP_693730.1 110834871 4211799 2295648..2296994 1 NC_008260.1 (acetyl-CoA carboxylase, biotin carboxylase) identified by sequence similarity; InterPro: Acetyl-CoA carboxylase, biotin carboxylase; High confidence in function and specificity; acetyl-CoA carboxylase, biotin carboxylase 2296994 accC 4211799 accC Alcanivorax borkumensis SK2 acetyl-CoA carboxylase, biotin carboxylase YP_693730.1 2295648 D 393595 CDS YP_693731.1 110834872 4211218 2297049..2298035 1 NC_008260.1 identified by sequencesimilarity; High confidence in function and specificity; 50S ribosomal protein L11 methyltransferase 2298035 prmA 4211218 prmA Alcanivorax borkumensis SK2 50S ribosomal protein L11 methyltransferase YP_693731.1 2297049 D 393595 CDS YP_693732.1 110834873 4212060 2298206..2299411 1 NC_008260.1 hypothetical protein 2299411 4212060 ABO_2012 Alcanivorax borkumensis SK2 hypothetical protein YP_693732.1 2298206 D 393595 CDS YP_693733.1 110834874 4212061 2299530..2300570 1 NC_008260.1 (TIM-barrel protein NifR3 family, ) identified by match to PFAM protein family HMMPF04131 InterPro: TIM-barrel protein nifR3 family; Function unclear; NifR3 family TIM-barrel protein 2300570 4212061 ABO_2013 Alcanivorax borkumensis SK2 NifR3 family TIM-barrel protein YP_693733.1 2299530 D 393595 CDS YP_693734.1 110834875 4212479 2300567..2300899 1 NC_008260.1 identified by sequencesimilarity; InterPro: Helix-turn-helix Fis-type; High confidence in function and specificity; Fis family transcriptional regulator 2300899 fis 4212479 fis Alcanivorax borkumensis SK2 Fis family transcriptional regulator YP_693734.1 2300567 D 393595 CDS YP_693735.1 110834876 4211146 2300994..2302571 1 NC_008260.1 (phosphoribosylaminoimidazolecarboxamideformyltrans feras e/IMP cyclohydrolase) identified by sequence similarity; High confidence in function and specificity; phosphoribosylaminoimidazolecarboxamide formyltransferase 2302571 purH 4211146 purH Alcanivorax borkumensis SK2 phosphoribosylaminoimidazolecarboxamide formyltransferase YP_693735.1 2300994 D 393595 CDS YP_693736.1 110834877 4211143 2302686..2303984 1 NC_008260.1 (phosphoribosylamine--glycine ligase) identified by match to TIGR protein family HMMTIGR00877 InterPro: Phosphoribosylglycinamide synthetase; High confidence in function and specificity; phosphoribosylamine-glycine ligase 2303984 purD 4211143 purD Alcanivorax borkumensis SK2 phosphoribosylamine-glycine ligase YP_693736.1 2302686 D 393595 CDS YP_693737.1 110834878 4212062 2304055..2305122 1 NC_008260.1 (cytochrome c551 peroxidase ) identified by match to PFAM protein family HMMPF03150 InterPro: Cyclic nucleotide-binding domain; Family membership; cAMP-dependent protein kinase regulatory chain 2305122 4212062 ABO_2017 Alcanivorax borkumensis SK2 cAMP-dependent protein kinase regulatory chain YP_693737.1 2304055 D 393595 CDS YP_693738.1 110834879 4212063 2305082..2307895 1 NC_008260.1 identified by match to PFAM protein family HMMPF04171; Family membership; sensor histidine kinase/response regulator 2307895 4212063 ABO_2018 Alcanivorax borkumensis SK2 sensor histidine kinase/response regulator YP_693738.1 2305082 D 393595 CDS YP_693739.1 110834880 4212064 complement(2307926..2309407) 1 NC_008260.1 AAA-protein (ATPases associated with various cellular activities); Family membership; ATPase AAA 2309407 4212064 ABO_2019 Alcanivorax borkumensis SK2 ATPase AAA YP_693739.1 2307926 R 393595 CDS YP_693740.1 110834881 4212065 2309573..2310232 1 NC_008260.1 identified by match to PFAM protein family HMMPF03232; hypothetical protein 2310232 4212065 ABO_2020 Alcanivorax borkumensis SK2 hypothetical protein YP_693740.1 2309573 D 393595 CDS YP_693741.1 110834882 4213642 complement(2310340..2311170) 1 NC_008260.1 S-adenosylmethionine provides the aminopropyl moiety required for spermidine biosynthesis from putrescine; S-adenosylmethionine decarboxylase 2311170 speD 4213642 speD Alcanivorax borkumensis SK2 S-adenosylmethionine decarboxylase YP_693741.1 2310340 R 393595 CDS YP_693742.1 110834883 4213868 complement(2311298..2311714) 1 NC_008260.1 identified by sequence similarity; hypothetical protein 2311714 4213868 ABO_2022 Alcanivorax borkumensis SK2 hypothetical protein YP_693742.1 2311298 R 393595 CDS YP_693743.1 110834884 4213648 2312039..2312668 1 NC_008260.1 complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 2312668 crp 4213648 crp Alcanivorax borkumensis SK2 cAMP-regulatory protein YP_693743.1 2312039 D 393595 CDS YP_693744.1 110834885 4211818 complement(2312926..2313720) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF00218 InterPro: Indole-3-glycerol phosphate synthase; High confidence in function and specificity; indole-3-glycerol phosphate synthase 2313720 trpC 4211818 trpC Alcanivorax borkumensis SK2 indole-3-glycerol phosphate synthase YP_693744.1 2312926 R 393595 CDS YP_693745.1 110834886 4211819 complement(2313732..2314784) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF00591; InterPro: Glycosyl transferase family; High confidence in function and specificity; anthranilate phosphoribosyltransferase 2314784 trpD 4211819 trpD Alcanivorax borkumensis SK2 anthranilate phosphoribosyltransferase YP_693745.1 2313732 R 393595 CDS YP_693746.1 110834887 4211822 complement(2314781..2315383) 1 NC_008260.1 (anthranilate synthase component II, glutamine amidotransferase) identified by sequence similarity; identified by match to PFAM protein family HMMPF00117 and TIGRFAM protein family HMMTIGR00566; High confidence in function and specificity; anthranilate synthase, component II 2315383 trpG 4211822 trpG Alcanivorax borkumensis SK2 anthranilate synthase, component II YP_693746.1 2314781 R 393595 CDS YP_693747.1 110834888 4211820 complement(2315386..2316876) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein families HMMPF00425 and HMMPF04715 InterPro: Anthranilate synthase component I and chorismate binding enzyme; High confidence in function and specificity; anthranilate synthase, component I 2316876 trpE 4211820 trpE Alcanivorax borkumensis SK2 anthranilate synthase, component I YP_693747.1 2315386 R 393595 CDS YP_693748.1 110834889 4213869 2317214..2317669 1 NC_008260.1 hypothetical protein 2317669 4213869 ABO_2028 Alcanivorax borkumensis SK2 hypothetical protein YP_693748.1 2317214 D 393595 CDS YP_693749.1 110834890 4213870 2317674..2318231 1 NC_008260.1 hypothetical protein 2318231 4213870 ABO_2029 Alcanivorax borkumensis SK2 hypothetical protein YP_693749.1 2317674 D 393595 CDS YP_693750.1 110834891 4213871 2318228..2318569 1 NC_008260.1 (conserved hypothetical protein) identified by Glimmer2; hypothetical protein 2318569 4213871 ABO_2030 Alcanivorax borkumensis SK2 hypothetical protein YP_693750.1 2318228 D 393595 CDS YP_693751.1 110834892 4212036 complement(2318657..2319205) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00072 InterPro: Response regulator receiver domain; High confidence in function and specificity; response regulator 2319205 regR 4212036 regR Alcanivorax borkumensis SK2 response regulator YP_693751.1 2318657 R 393595 CDS YP_693752.1 110834893 4213872 complement(2319198..2320559) 1 NC_008260.1 (two-component, sensor histidine protein kinase, ) identified by match to PFAM protein family HMMPF04093 InterPro: Histidine kinase C-terminal; High confidence in function and specificity; two-component, sensor histidine protein kinase 2320559 4213872 ABO_2032 Alcanivorax borkumensis SK2 two-component, sensor histidine protein kinase YP_693752.1 2319198 R 393595 CDS YP_693753.1 110834894 4213873 complement(2320569..2321288) 1 NC_008260.1 InterPro: SURF1 family; Family membership; SurF1 family protein 2321288 4213873 ABO_2033 Alcanivorax borkumensis SK2 SurF1 family protein YP_693753.1 2320569 R 393595 CDS YP_693754.1 110834895 4213664 complement(2321438..2321833) 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; cytochrome o ubiquinol oxidase, protein CyoD 2321833 cyoD 4213664 cyoD Alcanivorax borkumensis SK2 cytochrome o ubiquinol oxidase, protein CyoD YP_693754.1 2321438 R 393595 CDS YP_693755.1 110834896 4213663 complement(2321830..2322498) 1 NC_008260.1 identified by sequence similarity; InterPro: Cytochrome c oxidase subunit III catalytic activity: ubiquinol-8 + o(2) = ubiquinone-8 + h(2)o; High confidence in function and specificity; cytochrome o ubiquinol oxidase subunit III 2322498 cyoC 4213663 cyoC Alcanivorax borkumensis SK2 cytochrome o ubiquinol oxidase subunit III YP_693755.1 2321830 R 393595 CDS YP_693756.1 110834897 4213662 complement(2322461..2324470) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00780 InterPro: Cytochrome c oxidase subunit I; High confidence in function and specificity; cytochrome c oxidase subunit I 2324470 cyoB 4213662 cyoB Alcanivorax borkumensis SK2 cytochrome c oxidase subunit I YP_693756.1 2322461 R 393595 CDS YP_693757.1 110834898 4213661 complement(2324497..2325510) 1 NC_008260.1 identified by sequence similarity; InterPro: Cu(A) centre of cytochrome c oxidase subunit II and nitrous oxide reductase; High confidence in function and specificity; cytochrome o ubiquinol oxidase subunit II 2325510 cyoA 4213661 cyoA Alcanivorax borkumensis SK2 cytochrome o ubiquinol oxidase subunit II YP_693757.1 2324497 R 393595 CDS YP_693758.1 110834899 4213874 2325733..2327040 1 NC_008260.1 (metabolite transport transmembrane protein, ) identified by sequencesimilarity; InterPro: General substrate transporters; High confidence in function and specificity; metabolite transport transmembrane protein 2327040 4213874 ABO_2038 Alcanivorax borkumensis SK2 metabolite transport transmembrane protein YP_693758.1 2325733 D 393595 CDS YP_693759.1 110834900 4213875 complement(2327231..2328340) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01317 InterPro: NADH:flavin oxidoreductase/NADH oxidase; High confidence in function and specificity; FMN-binding oxidoreductase 2328340 4213875 ABO_2039 Alcanivorax borkumensis SK2 FMN-binding oxidoreductase YP_693759.1 2327231 R 393595 CDS YP_693760.1 110834901 4213876 2328594..2329055 1 NC_008260.1 identified by match to PFAM protein family HMMPF03551 InterPro: Protein of unknown function DUF24; hypothetical protein 2329055 4213876 ABO_2040 Alcanivorax borkumensis SK2 hypothetical protein YP_693760.1 2328594 D 393595 CDS YP_693761.1 110834902 4213877 complement(2329394..2329996) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00877 InterPro: NLP/P60; Function unclear; NLP/P60 family protein 2329996 4213877 ABO_2041 Alcanivorax borkumensis SK2 NLP/P60 family protein YP_693761.1 2329394 R 393595 CDS YP_693762.1 110834903 4212172 complement(2330025..2330699) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01740 InterPro: Ribulose-phosphate 3-epimerase; High confidence in function and specificity; ribulose-phosphate 3-epimerase 2330699 rpe 4212172 rpe Alcanivorax borkumensis SK2 ribulose-phosphate 3-epimerase YP_693762.1 2330025 R 393595 CDS YP_693763.1 110834904 4213878 complement(2330790..2331455) 1 NC_008260.1 identified by sequencesimilarity; InterPro: ADP-glucose pyrophosphorylase; Family membership; nucleotidyltransferase family protein 2331455 4213878 ABO_2043 Alcanivorax borkumensis SK2 nucleotidyltransferase family protein YP_693763.1 2330790 R 393595 CDS YP_693764.1 110834905 4213879 complement(2331452..2332456) 1 NC_008260.1 hypothetical protein 2332456 4213879 ABO_2044 Alcanivorax borkumensis SK2 hypothetical protein YP_693764.1 2331452 R 393595 CDS YP_693765.1 110834906 4213880 2332548..2334827 1 NC_008260.1 (outer membrane ferric siderophore receptor) identified by match to PFAM protein family HMMPF00593 shows little homology to an organic solvent tolerance protein OstA precursor determines n-hexane tolerance. involved in outer membrane permeability. essential for envelope biogenesis. could be part of a targeting/usher system for outer membrane components (by similarity).; hypothetical protein 2334827 4213880 ABO_2045 Alcanivorax borkumensis SK2 hypothetical protein YP_693765.1 2332548 D 393595 CDS YP_693766.1 110834907 4211982 2334820..2336127 1 NC_008260.1 (Survival protein surA precursor (Peptidyl-prolyl cis-trans isomerase surA) identified by sequence similarity; InterPro: PpiC-type peptidyl-prolyl cis-trans isomerase; High confidence in function and specificity; survival protein SurA 2336127 surA 4211982 surA Alcanivorax borkumensis SK2 survival protein SurA YP_693766.1 2334820 D 393595 CDS YP_693767.1 110834908 4212448 2336293..2337300 1 NC_008260.1 identified by match to PFAM protein family HMMPF04166; High confidence in function and specificity; pyridoxal phosphate biosynthetic protein PdxA 2337300 pdxA 4212448 pdxA Alcanivorax borkumensis SK2 pyridoxal phosphate biosynthetic protein PdxA YP_693767.1 2336293 D 393595 CDS YP_693768.1 110834909 4211533 2337360..2338202 1 NC_008260.1 identified by match to PFAM protein family HMMPF00398 InterPro: Ribosomal RNA adenine dimethylase; Family membership; ribosomal RNA adenine dimethylase 2338202 ksgA 4211533 ksgA Alcanivorax borkumensis SK2 ribosomal RNA adenine dimethylase YP_693768.1 2337360 D 393595 CDS YP_693769.1 110834910 4213881 2338199..2338615 1 NC_008260.1 protein associated with Co2+ and Mg2+ efflux; ApaG protein 2338615 apaG 4213881 apaG Alcanivorax borkumensis SK2 ApaG protein YP_693769.1 2338199 D 393595 CDS YP_693770.1 110834911 4213473 2338742..2339548 1 NC_008260.1 hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 2339548 apaH 4213473 apaH Alcanivorax borkumensis SK2 diadenosine tetraphosphatase YP_693770.1 2338742 D 393595 CDS YP_693771.1 110834912 4213882 complement(2339545..2340465) 1 NC_008260.1 (membrane protein, ) identified by match to PFAM protein family HMMPF04103 InterPro: Integral membrane protein DUF6; Function unclear; hypothetical protein 2340465 4213882 ABO_2051 Alcanivorax borkumensis SK2 hypothetical protein YP_693771.1 2339545 R 393595 CDS YP_693772.1 110834913 4212963 2340824..2342056 1 NC_008260.1 (tRNA nucleotidyltransferase ) identifiedby sequence similarity; InterPro: Poly A polymerase family; Family membership; tRNA cytidylyltransferase 2342056 cca 4212963 cca Alcanivorax borkumensis SK2 tRNA cytidylyltransferase YP_693772.1 2340824 D 393595 CDS YP_693773.1 110834914 4213883 2342056..2342793 1 NC_008260.1 Dehydrogenases with different specificities identified by sequence similarity; InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity; dehydrogenase/reductase 2342793 4213883 ABO_2053 Alcanivorax borkumensis SK2 dehydrogenase/reductase YP_693773.1 2342056 D 393595 CDS YP_693774.1 110834915 4213884 2342828..2343265 1 NC_008260.1 hypothetical protein 2343265 4213884 ABO_2054 Alcanivorax borkumensis SK2 hypothetical protein YP_693774.1 2342828 D 393595 CDS YP_693775.1 110834916 4213885 2343238..2344170 1 NC_008260.1 hypothetical protein 2344170 4213885 ABO_2055 Alcanivorax borkumensis SK2 hypothetical protein YP_693775.1 2343238 D 393595 CDS YP_693776.1 110834917 4212487 complement(2344257..2344769) 1 NC_008260.1 (7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinas e) identified by sequencesimilarity; InterPro: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase; Family membership; 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase 2344769 folK 4212487 folK Alcanivorax borkumensis SK2 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase YP_693776.1 2344257 R 393595 CDS YP_693777.1 110834918 4212485 complement(2344762..2345178) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Dihydroneopterin aldolase; High confidence in function and specificity; dihydroneopterin aldolase 2345178 folB 4212485 folB Alcanivorax borkumensis SK2 dihydroneopterin aldolase YP_693777.1 2344762 R 393595 CDS YP_693778.1 110834919 4213886 2345302..2345916 1 NC_008260.1 (conserved hypothetical protein TIGR00023) InterPRO: Domain of unknown function DUF205; hypothetical protein 2345916 4213886 ABO_2058 Alcanivorax borkumensis SK2 hypothetical protein YP_693778.1 2345302 D 393595 CDS YP_693779.1 110834920 4211688 complement(2346014..2347051) 1 NC_008260.1 identified by sequence similarity; InterPro: Glycoprotease (M22) metallo-protease family; Family membership; glycoprotease family protein 2347051 gcp 4211688 gcp Alcanivorax borkumensis SK2 glycoprotease family protein YP_693779.1 2346014 R 393595 CDS YP_693780.1 110834921 4212566 2347211..2347426 1 NC_008260.1 identified by sequencesimilarity; InterPro: Ribosomal protein S21; High confidence in function and specificity; 30S ribosomal protein S21 2347426 rpsU 4212566 rpsU Alcanivorax borkumensis SK2 30S ribosomal protein S21 YP_693780.1 2347211 D 393595 CDS YP_693781.1 110834922 4213887 2347441..2347887 1 NC_008260.1 (conserved hypothetical protein TIGR00281) identified by match to PFAM protein family HMMPF04079 InterPro: DUF186; hypothetical protein 2347887 4213887 ABO_2061 Alcanivorax borkumensis SK2 hypothetical protein YP_693781.1 2347441 D 393595 CDS YP_693782.1 110834923 4211398 2348052..2350010 1 NC_008260.1 identified by match to PFAM protein family HMMPF01807 InterPro: CHC2 zinc finger; High confidence in function and specificity; DNA primase 2350010 dnaG 4211398 dnaG Alcanivorax borkumensis SK2 DNA primase YP_693782.1 2348052 D 393595 CDS YP_693783.1 110834924 4212366 2350147..2352048 1 NC_008260.1 identified by sequence similarity; InterPro: Sigma-70 factor family; High confidence in function and specificity; RNA polymerase sigma factor RpoD 2352048 rpoD 4212366 rpoD Alcanivorax borkumensis SK2 RNA polymerase sigma factor RpoD YP_693783.1 2350147 D 393595 CDS YP_693784.1 110834925 4211652 2352446..2353549 1 NC_008260.1 identified by sequencesimilarity; InterPro: Phage integrase; High confidence in function and specificity; shufflon-specific DNA recombinase 2353549 rci 4211652 rci Alcanivorax borkumensis SK2 shufflon-specific DNA recombinase YP_693784.1 2352446 D 393595 CDS YP_693785.1 110834926 4212321 2354216..2355187 1 NC_008260.1 identified by sequence similarity; hypothetical protein 2355187 4212321 ABO_2065 Alcanivorax borkumensis SK2 hypothetical protein YP_693785.1 2354216 D 393595 CDS YP_693786.1 110834927 4212322 complement(2355147..2355335) 1 NC_008260.1 hypothetical protein 2355335 4212322 ABO_2066 Alcanivorax borkumensis SK2 hypothetical protein YP_693786.1 2355147 R 393595 CDS YP_693787.1 110834928 4212323 2355604..2355834 1 NC_008260.1 hypothetical protein 2355834 4212323 ABO_2067 Alcanivorax borkumensis SK2 hypothetical protein YP_693787.1 2355604 D 393595 CDS YP_693788.1 110834929 4212324 2355831..2356217 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2356217 4212324 ABO_2068 Alcanivorax borkumensis SK2 hypothetical protein YP_693788.1 2355831 D 393595 CDS YP_693789.1 110834930 4212325 2356217..2356507 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2356507 4212325 ABO_2069 Alcanivorax borkumensis SK2 hypothetical protein YP_693789.1 2356217 D 393595 CDS YP_693790.1 110834931 4212326 2356542..2357204 1 NC_008260.1 (potassium efflux system protein KefA ) identified by sequence similarity; hypothetical protein 2357204 4212326 ABO_2070 Alcanivorax borkumensis SK2 hypothetical protein YP_693790.1 2356542 D 393595 CDS YP_693791.1 110834932 4212327 2357208..2357540 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2357540 4212327 ABO_2071 Alcanivorax borkumensis SK2 hypothetical protein YP_693791.1 2357208 D 393595 CDS YP_693792.1 110834933 4212328 2357553..2358485 1 NC_008260.1 identified by sequence similarity; hypothetical protein 2358485 4212328 ABO_2072 Alcanivorax borkumensis SK2 hypothetical protein YP_693792.1 2357553 D 393595 CDS YP_693793.1 110834934 4212329 2358482..2358748 1 NC_008260.1 Region start changed from 2358473 to 2358482 (-9 bases); hypothetical protein 2358748 4212329 ABO_2073 Alcanivorax borkumensis SK2 hypothetical protein YP_693793.1 2358482 D 393595 CDS YP_693794.1 110834935 4212330 2358847..2359614 1 NC_008260.1 identified by sequence similarity; InterPro: ParA family ATPase; Family membership; ParA family protein 2359614 4212330 ABO_2074 Alcanivorax borkumensis SK2 ParA family protein YP_693794.1 2358847 D 393595 CDS YP_693795.1 110834936 4212331 2359607..2360692 1 NC_008260.1 Transcriptional repressor protein, probably korB; Family membership; transcriptional repressor 2360692 4212331 ABO_2075 Alcanivorax borkumensis SK2 transcriptional repressor YP_693795.1 2359607 D 393595 CDS YP_693796.1 110834937 4212332 2360833..2361207 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2361207 4212332 ABO_2076 Alcanivorax borkumensis SK2 hypothetical protein YP_693796.1 2360833 D 393595 CDS YP_693797.1 110834938 4212333 2361272..2361553 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2361553 4212333 ABO_2077 Alcanivorax borkumensis SK2 hypothetical protein YP_693797.1 2361272 D 393595 CDS YP_693798.1 110834939 4212334 complement(2362059..2364641) 1 NC_008260.1 (penicillin-binding protein) identified by sequence similarity; InterPro: Penicillin binding protein transpeptidase domain penicillin-binding protein 1a (pbp-1a) (pbp1a) [includes: penicillin- insensitive transglycosylase (EC 2.4.2.-) (peptidoglycan tgase); penicillin-sensitive transpeptidase (EC 3.4.-.-) (dd-transpeptidase)].; High confidence in function and specificity; penicillin-binding protein 2364641 4212334 ABO_2078 Alcanivorax borkumensis SK2 penicillin-binding protein YP_693798.1 2362059 R 393595 CDS YP_693799.1 110834940 4212335 complement(2364789..2366903) 1 NC_008260.1 (oxalate/formate antiporter ) identified by sequencesimilarity; hypothetical protein 2366903 4212335 ABO_2079 Alcanivorax borkumensis SK2 hypothetical protein YP_693799.1 2364789 R 393595 CDS YP_693800.1 110834941 4212336 complement(2366914..2367672) 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2367672 4212336 ABO_2080 Alcanivorax borkumensis SK2 hypothetical protein YP_693800.1 2366914 R 393595 CDS YP_693801.1 110834942 4211913 complement(2368353..2369225) 1 NC_008260.1 (transposase subunit B, ) identified by sequencesimilarity; InterPro: Integrase catalytic core; High confidence in function and specificity; transposase subunit B 2369225 tnpB 4211913 tnpB Alcanivorax borkumensis SK2 transposase subunit B YP_693801.1 2368353 R 393595 CDS YP_693802.1 110834943 4211948 complement(2369222..2369500) 1 NC_008260.1 (transposase, ) identified by match to PFAM protein family HMMPF04218 InterPro: Transposase IS911 HTH and LZ region; High confidence in function and specificity; transposase 2369500 tnpA 4211948 tnpA Alcanivorax borkumensis SK2 transposase YP_693802.1 2369222 R 393595 CDS YP_693803.1 110834944 4212337 2370076..2372349 1 NC_008260.1 conserved hypothetical protein that shows an Ankyrin-repeat InterPro: Ankyrin-repeat; hypothetical protein 2372349 4212337 ABO_2083 Alcanivorax borkumensis SK2 hypothetical protein YP_693803.1 2370076 D 393595 CDS YP_693804.1 110834945 4212338 complement(2372666..2374195) 1 NC_008260.1 conserved hypothetical protein identified by match to PFAM protein family HMMPF00012 InterPro: Heat shock protein hsp70; hypothetical protein 2374195 4212338 ABO_2084 Alcanivorax borkumensis SK2 hypothetical protein YP_693804.1 2372666 R 393595 CDS YP_693805.1 110834946 4212339 complement(2374205..2375134) 1 NC_008260.1 hypothetical protein 2375134 4212339 ABO_2085 Alcanivorax borkumensis SK2 hypothetical protein YP_693805.1 2374205 R 393595 CDS YP_693806.1 110834947 4213293 complement(2375631..2377010) 1 NC_008260.1 exhibits an RNA-dependent ATPase activity, specifically stimulated by bacterial 23S rRNA; ATP-dependent RNA helicase DbpA 2377010 dbpA 4213293 dbpA Alcanivorax borkumensis SK2 ATP-dependent RNA helicase DbpA YP_693806.1 2375631 R 393595 CDS YP_693807.1 110834948 4211159 2377165..2377857 1 NC_008260.1 siderophore biosynthesis protein identified by sequence similarity; InterPro: Holo-acyl carrier protein synthase; Conserved hypothetical protein; siderophore biosynthesis protein 2377857 4211159 ABO_2087 Alcanivorax borkumensis SK2 siderophore biosynthesis protein YP_693807.1 2377165 D 393595 CDS YP_693808.1 110834949 4211160 complement(2377980..2378711) 1 NC_008260.1 (penicillin-binding protein 2) identified by match to PFAM protein family HMMPF00905; High confidence in function and specificity; ferric iron reductase protein 2378711 4211160 ABO_2088 Alcanivorax borkumensis SK2 ferric iron reductase protein YP_693808.1 2377980 R 393595 CDS YP_693809.1 110834950 4211161 complement(2378711..2380003) 1 NC_008260.1 Region start changed from 2380063 to 2380003 (-60 bases) region start changed to correct the mistake during contig update; L-ornithine N5-oxygenase 2380003 4211161 ABO_2089 Alcanivorax borkumensis SK2 L-ornithine N5-oxygenase YP_693809.1 2378711 R 393595 CDS YP_693810.1 110834951 4211211 complement(2380154..2381140) 1 NC_008260.1 identify by sequence similarity.; High confidence in function and specificity; siderophore biosynthesis protein 2381140 iucB 4211211 iucB Alcanivorax borkumensis SK2 siderophore biosynthesis protein YP_693810.1 2380154 R 393595 CDS YP_693811.1 110834952 4212490 complement(2381130..2383367) 1 NC_008260.1 (ferrioxamine receptor ) identified by sequence similarity; InterPro: TonB-dependent receptor protein; High confidence in function and specificity; ferrioxamine receptor 2383367 foxA 4212490 foxA Alcanivorax borkumensis SK2 ferrioxamine receptor YP_693811.1 2381130 R 393595 CDS YP_693812.1 110834953 4211162 complement(2383468..2388942) 1 NC_008260.1 (peptide synthetase, ); identified by sequence similarity; High confidence in function and specificity; peptide synthetase 2388942 4211162 ABO_2092 Alcanivorax borkumensis SK2 peptide synthetase YP_693812.1 2383468 R 393595 CDS YP_693813.1 110834954 4211163 complement(2388956..2399758) 1 NC_008260.1 (peptide synthetase); identified by sequence similarity; High confidence in function and specificity; peptide synthetase 2399758 4211163 ABO_2093 Alcanivorax borkumensis SK2 peptide synthetase YP_693813.1 2388956 R 393595 CDS YP_693814.1 110834955 4211164 complement(2399795..2399998) 1 NC_008260.1 (MbtH-like protein, ) by similarity to PFAM family PF03621; Family membership; balhimycin biosynthetic protein MbtH 2399998 4211164 ABO_2094 Alcanivorax borkumensis SK2 balhimycin biosynthetic protein MbtH YP_693814.1 2399795 R 393595 CDS YP_693815.1 110834956 4211577 complement(2400086..2401747) 1 NC_008260.1 efflux pump for the antibacterial peptide microcin J25; multidrug transporter membrane protein/ATP-binding protein 2401747 yojI 4211577 yojI Alcanivorax borkumensis SK2 multidrug transporter membrane protein/ATP-binding protein YP_693815.1 2400086 R 393595 CDS YP_693816.1 110834957 4211165 2401954..2402565 1 NC_008260.1 (transcriptional regulator, ) identified by match to PFAM protein family HMMPF00440; Family membership; TetR family transcriptional regulator 2402565 4211165 ABO_2096 Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_693816.1 2401954 D 393595 CDS YP_693817.1 110834958 4213346 2402672..2403307 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; endonuclease I 2403307 endA 4213346 endA Alcanivorax borkumensis SK2 endonuclease I YP_693817.1 2402672 D 393595 CDS YP_693818.1 110834959 4211865 complement(2403448..2405229) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00441 InterPro: Acyl-CoA dehydrogenase; High confidence in function and specificity; acyl-CoA dehydrogenase 2405229 fadE 4211865 fadE Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_693818.1 2403448 R 393595 CDS YP_693819.1 110834960 4211693 2405463..2405657 1 NC_008260.1 (glutamate dehydrogenase) identified by sequence similarity.; High confidence in function and specificity; glutamate dehydrogenase 2405657 gdhA 4211693 gdhA Alcanivorax borkumensis SK2 glutamate dehydrogenase YP_693819.1 2405463 D 393595 CDS YP_693820.1 110834961 4211694 2405705..2406799 1 NC_008260.1 converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 2406799 gdhA 4211694 gdhA Alcanivorax borkumensis SK2 glutamate dehydrogenase YP_693820.1 2405705 D 393595 CDS YP_693821.1 110834962 4211166 complement(2406838..2407278) 1 NC_008260.1 identified by sequence similarity; hypothetical protein 2407278 4211166 ABO_2101 Alcanivorax borkumensis SK2 hypothetical protein YP_693821.1 2406838 R 393595 CDS YP_693822.1 110834963 4211167 complement(2407577..2409373) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00441 InterPro: Acyl-CoA dehydrogenase; High confidence in function and specificity; acyl-CoA dehydrogenase 2409373 4211167 ABO_2102 Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_693822.1 2407577 R 393595 CDS YP_693823.1 110834964 4211168 2409646..2409840 1 NC_008260.1 hypothetical protein 2409840 4211168 ABO_2103 Alcanivorax borkumensis SK2 hypothetical protein YP_693823.1 2409646 D 393595 CDS YP_693824.1 110834965 4211389 2409879..2410916 1 NC_008260.1 ( outer membrane phospholipase A precursor, ) InterPro: Phospholipase A1; Family membership; outer membrane phospholipase A 2410916 pldA 4211389 pldA Alcanivorax borkumensis SK2 outer membrane phospholipase A YP_693824.1 2409879 D 393595 CDS YP_693825.1 110834966 4211169 2411581..2412042 1 NC_008260.1 hypothetical protein 2412042 4211169 ABO_2105 Alcanivorax borkumensis SK2 hypothetical protein YP_693825.1 2411581 D 393595 CDS YP_693826.1 110834967 4211170 complement(2412124..2413128) 1 NC_008260.1 (transcriptional regulator, ) identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; Family membership; AraC family transcriptional regulator 2413128 4211170 ABO_2106 Alcanivorax borkumensis SK2 AraC family transcriptional regulator YP_693826.1 2412124 R 393595 CDS YP_693827.1 110834968 4211171 2413198..2414688 1 NC_008260.1 (monooxygenase, ) identified by sequence similarity; InterPro: Flavin-containing monooxygenase (FMO); High confidence in function and specificity; monooxygenase 2414688 4211171 ABO_2107 Alcanivorax borkumensis SK2 monooxygenase YP_693827.1 2413198 D 393595 CDS YP_693828.1 110834969 4211172 2414685..2415635 1 NC_008260.1 (lipase/esterase family protein) identified by sequence similarity; InterPro: Esterase/lipase/thioesterase/carboxlesterase family active site; High confidence in function and specificity; lipase/esterase 2415635 4211172 ABO_2108 Alcanivorax borkumensis SK2 lipase/esterase YP_693828.1 2414685 D 393595 CDS YP_693829.1 110834970 4211173 2415632..2416390 1 NC_008260.1 (short chain dehydrogenase/reductase, ) identified by sequence similarity; InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity; short chain dehydrogenase 2416390 4211173 ABO_2109 Alcanivorax borkumensis SK2 short chain dehydrogenase YP_693829.1 2415632 D 393595 CDS YP_693830.1 110834971 4211174 complement(2416533..2416973) 1 NC_008260.1 hypothetical protein 2416973 4211174 ABO_2110 Alcanivorax borkumensis SK2 hypothetical protein YP_693830.1 2416533 R 393595 CDS YP_693831.1 110834972 4211175 2417040..2417942 1 NC_008260.1 (hydrolase alpha/beta fold family, ) identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Family membership; alpha/beta hydrolase 2417942 4211175 ABO_2111 Alcanivorax borkumensis SK2 alpha/beta hydrolase YP_693831.1 2417040 D 393595 CDS YP_693832.1 110834973 4211176 2417992..2418825 1 NC_008260.1 oxidoreductase short chaindehydrogenase/reductase family identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; dehydrogenase/reductase 2418825 4211176 ABO_2112 Alcanivorax borkumensis SK2 dehydrogenase/reductase YP_693832.1 2417992 D 393595 CDS YP_693833.1 110834974 4211177 complement(2418981..2419487) 1 NC_008260.1 hypothetical protein 2419487 4211177 ABO_2113 Alcanivorax borkumensis SK2 hypothetical protein YP_693833.1 2418981 R 393595 CDS YP_693834.1 110834975 4211178 complement(2419912..2420250) 1 NC_008260.1 (hit-2) identified by match to PFAM protein family HMMPF01230, InterPro: HIT (Histidine triad protein) family; Family membership; HIT family protein 2420250 4211178 ABO_2114 Alcanivorax borkumensis SK2 HIT family protein YP_693834.1 2419912 R 393595 CDS YP_693835.1 110834976 4212009 2420462..2421370 1 NC_008260.1 identified by sequence similarity; hypothetical protein 2421370 4212009 ABO_2115 Alcanivorax borkumensis SK2 hypothetical protein YP_693835.1 2420462 D 393595 CDS YP_693836.1 110834977 4212010 complement(2421521..2422468) 1 NC_008260.1 (transcriptional regulator, ) identified by match to PFAM protein family HMMPF03466 InterPro: NodD transcription activator carboxyl terminal region,Bacterial regulatory protein, LysR family HTH reporting nucleic acid binding motif; Family membership; LysR family transcriptional regulator 2422468 4212010 ABO_2116 Alcanivorax borkumensis SK2 LysR family transcriptional regulator YP_693836.1 2421521 R 393595 CDS YP_693837.1 110834978 4212011 2422906..2423178 1 NC_008260.1 homologous to PA3385 and PP4470, identified by match to PFAM protein family HMMPF03869; Specificity unclear; alginate biosynthesis transcriptional activator 2423178 4212011 ABO_2117 Alcanivorax borkumensis SK2 alginate biosynthesis transcriptional activator YP_693837.1 2422906 D 393595 CDS YP_693838.1 110834979 4212012 2423342..2424571 1 NC_008260.1 identified by sequence similarity; InterPro: Domain of unknown function DUF9; Family membership; diguanylate cyclase 2424571 4212012 ABO_2118 Alcanivorax borkumensis SK2 diguanylate cyclase YP_693838.1 2423342 D 393595 CDS YP_693839.1 110834980 4212013 complement(2424756..2425979) 1 NC_008260.1 flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 2425979 4212013 ABO_2119 Alcanivorax borkumensis SK2 nitric oxide dioxygenase YP_693839.1 2424756 R 393595 CDS YP_693840.1 110834981 4212014 2426070..2426501 1 NC_008260.1 (Transcriptional regulator, ) identified by match to PFAM protein family HMMPF02082 InterPro: Uncharacterized protein family UPF0074; Family membership; transcriptional regulator 2426501 4212014 ABO_2120 Alcanivorax borkumensis SK2 transcriptional regulator YP_693840.1 2426070 D 393595 CDS YP_693841.1 110834982 4212015 complement(2426651..2427085) 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2427085 4212015 ABO_2121 Alcanivorax borkumensis SK2 hypothetical protein YP_693841.1 2426651 R 393595 CDS YP_693842.1 110834983 4212016 complement(2427101..2427352) 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2427352 4212016 ABO_2122 Alcanivorax borkumensis SK2 hypothetical protein YP_693842.1 2427101 R 393595 CDS YP_693843.1 110834984 4212017 complement(2427423..2428262) 1 NC_008260.1 (transcriptional regulator, ) identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family HTH reporting nucleic acid binding motif; Family membership; LysR family transcriptional regulator 2428262 4212017 ABO_2123 Alcanivorax borkumensis SK2 LysR family transcriptional regulator YP_693843.1 2427423 R 393595 CDS YP_693844.1 110834985 4212578 2428371..2429837 1 NC_008260.1 identified by sequence similarity. InterPro: FAD-binding domain; High confidence in function and specificity; NADPH-sulfite reductase 2429837 cysJ 4212578 cysJ Alcanivorax borkumensis SK2 NADPH-sulfite reductase YP_693844.1 2428371 D 393595 CDS YP_693845.1 110834986 4212577 2429834..2430256 1 NC_008260.1 identified by similarity to Pfam protein families PF01077 and PF03460 InterPro: Nitrite and sulfite reductase; High confidence in function and specificity; sulfite reductase 2430256 cysI-1 4212577 cysI-1 Alcanivorax borkumensis SK2 sulfite reductase YP_693845.1 2429834 D 393595 CDS YP_693846.1 110834987 4212576 2430112..2430414 1 NC_008260.1 (cysI-2); identified by similarity to Pfam protein families PF01077 and PF03460; High confidence in function and specificity; sulfite reductase 2430414 cysI 4212576 cysI Alcanivorax borkumensis SK2 sulfite reductase YP_693846.1 2430112 D 393595 CDS YP_693847.1 110834988 4212018 2430428..2430754 1 NC_008260.1 DsrE/DsrF-like family protein, Pfam:DrsE; Family membership; DsrE/DsrF family oxidoreductase family protein 2430754 4212018 ABO_2127 Alcanivorax borkumensis SK2 DsrE/DsrF family oxidoreductase family protein YP_693847.1 2430428 D 393595 CDS YP_693848.1 110834989 4212019 2430770..2431183 1 NC_008260.1 Conserved hypothetical protein; iron-sulfur binding domain-containing protein 2431183 4212019 ABO_2128 Alcanivorax borkumensis SK2 iron-sulfur binding domain-containing protein YP_693848.1 2430770 D 393595 CDS YP_693849.1 110834990 4212020 2431187..2431567 1 NC_008260.1 hypothetical protein 2431567 4212020 ABO_2129 Alcanivorax borkumensis SK2 hypothetical protein YP_693849.1 2431187 D 393595 CDS YP_693850.1 110834991 4212021 2431561..2432562 1 NC_008260.1 (conserved hypothetical protein) identified by sequencesimilarity; InterPro: 2-nitropropane dioxygenase; Family membership; 2-nitropropane dioxygenase 2432562 4212021 ABO_2130 Alcanivorax borkumensis SK2 2-nitropropane dioxygenase YP_693850.1 2431561 D 393595 CDS YP_693851.1 110834992 4212022 complement(2433283..2434095) 1 NC_008260.1 Region start changed from 2434194 to 2434095 (-99 bases); M24/M37 family peptidase 2434095 4212022 ABO_2131 Alcanivorax borkumensis SK2 M24/M37 family peptidase YP_693851.1 2433283 R 393595 CDS YP_693852.1 110834993 4212023 complement(2434166..2435728) 1 NC_008260.1 identified by match to PFAM protein family HMMPF02743 InterPro: Metal dependent phosphohydrolase HD domain; Family membership; chemotaxis sensory transducer family protein 2435728 4212023 ABO_2132 Alcanivorax borkumensis SK2 chemotaxis sensory transducer family protein YP_693852.1 2434166 R 393595 CDS YP_693853.1 110834994 4211941 2436008..2437924 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; threonyl-tRNA synthetase 2437924 thrS 4211941 thrS Alcanivorax borkumensis SK2 threonyl-tRNA synthetase YP_693853.1 2436008 D 393595 CDS YP_693854.1 110834995 4211473 2438046..2438474 1 NC_008260.1 PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase 2438474 hisI 4211473 hisI Alcanivorax borkumensis SK2 phosphoribosyl-AMP cyclohydrolase YP_693854.1 2438046 D 393595 CDS YP_693855.1 110834996 4212582 2438471..2439853 1 NC_008260.1 catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2439853 cysS 4212582 cysS Alcanivorax borkumensis SK2 cysteinyl-tRNA synthetase YP_693855.1 2438471 D 393595 CDS YP_693856.1 110834997 4212024 complement(2440075..2440746) 1 NC_008260.1 hypothetical protein 2440746 4212024 ABO_2136 Alcanivorax borkumensis SK2 hypothetical protein YP_693856.1 2440075 R 393595 CDS YP_693857.1 110834998 4212025 2441154..2441708 1 NC_008260.1 (conserved hypothetical protein TIGR00278) identified by sequence similarity; InterPro: Domain of unknown function DUF37; hypothetical protein 2441708 4212025 ABO_2137 Alcanivorax borkumensis SK2 hypothetical protein YP_693857.1 2441154 D 393595 CDS YP_693858.1 110834999 4212026 2442219..2444288 1 NC_008260.1 identified by match to PFAM protein family HMMPF00593; Specificity unclear; TonB-dependent receptor 2444288 4212026 ABO_2138 Alcanivorax borkumensis SK2 TonB-dependent receptor YP_693858.1 2442219 D 393595 CDS YP_693859.1 110835000 4212027 2444363..2445670 1 NC_008260.1 hypothetical protein 2445670 4212027 ABO_2139 Alcanivorax borkumensis SK2 hypothetical protein YP_693859.1 2444363 D 393595 CDS YP_693860.1 110835001 4212066 2445833..2446351 1 NC_008260.1 hypothetical protein 2446351 4212066 ABO_2140 Alcanivorax borkumensis SK2 hypothetical protein YP_693860.1 2445833 D 393595 CDS YP_693861.1 110835002 4212067 complement(2446512..2446985) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00165; Family membership; AraC family transcriptional regulator 2446985 4212067 ABO_2141 Alcanivorax borkumensis SK2 AraC family transcriptional regulator YP_693861.1 2446512 R 393595 CDS YP_693862.1 110835003 4212068 complement(2446986..2448383) 1 NC_008260.1 identified by match to PFAM protein family HMMPF04279 and TIGRFAM protein family HMMTIGR00813; InterPro: Sodium:solute symporter family; Family membership; sodium solute transporter family protein 2448383 4212068 ABO_2142 Alcanivorax borkumensis SK2 sodium solute transporter family protein YP_693862.1 2446986 R 393595 CDS YP_693863.1 110835004 4212069 complement(2448828..2449256) 1 NC_008260.1 hypothetical protein 2449256 4212069 ABO_2143 Alcanivorax borkumensis SK2 hypothetical protein YP_693863.1 2448828 R 393595 CDS YP_693864.1 110835005 4212070 complement(2450123..2451094) 1 NC_008260.1 similar protein in Methanocaldococcus converts GTP to 7,8-dihydro-D-neopterin 2',3'-cyclic phosphate as the first step in methanopterin biosynthesis; GTP cyclohydrolase 2451094 4212070 ABO_2144 Alcanivorax borkumensis SK2 GTP cyclohydrolase YP_693864.1 2450123 R 393595 CDS YP_693865.1 110835006 4212071 complement(2451258..2452187) 1 NC_008260.1 (conserved hypothetical protein) identified by sequence similarity; InterPro: TPR repeat; hypothetical protein 2452187 4212071 ABO_2145 Alcanivorax borkumensis SK2 hypothetical protein YP_693865.1 2451258 R 393595 CDS YP_693866.1 110835007 4212206 2452364..2453386 1 NC_008260.1 TRAP dicarboxylate transporter DctP subunit. identified by sequencesimilarity. Pfam: SBP_bac7: Bacterial extracellular solute-binding protein, family 7; Family membership; TRAP dicarboxylate transporter, extracellular solute binding protein 2453386 dctP 4212206 dctP Alcanivorax borkumensis SK2 TRAP dicarboxylate transporter, extracellular solute binding protein YP_693866.1 2452364 D 393595 CDS YP_693867.1 110835008 4212204 complement(2453494..2454774) 1 NC_008260.1 TRAP-type C4-dicarboxylate transport system, dctM subunit. Identified by sequence similarity; TMHMM: reporting 9 transmembrane helices TIGRFAM:dctM; High confidence in function and specificity; TRAP-type C4-dicarboxylate transport system large permease 2454774 dctM 4212204 dctM Alcanivorax borkumensis SK2 TRAP-type C4-dicarboxylate transport system large permease YP_693867.1 2453494 R 393595 CDS YP_693868.1 110835009 4212208 complement(2454826..2455449) 1 NC_008260.1 TRAP-type C4-dicarboxylate transport system, small permease component. identified by sequence similarity. Pfam:Tripartite ATP-independent periplasmic transporters,DctQ component TMHMM: reporting 5 transmembrane helices; High confidence in function and specificity; TRAP-C4-dicarboxylate transport system, small permease 2455449 dctQ 4212208 dctQ Alcanivorax borkumensis SK2 TRAP-C4-dicarboxylate transport system, small permease YP_693868.1 2454826 R 393595 CDS YP_693869.1 110835010 4212072 2455718..2456302 1 NC_008260.1 (transcriptional regulator, MarR family) identified by match to PFAM protein family HMMPF03551 InterPro: Bacterial regulatory protein MarR family; Family membership; MarR family transcriptional regulator 2456302 4212072 ABO_2149 Alcanivorax borkumensis SK2 MarR family transcriptional regulator YP_693869.1 2455718 D 393595 CDS YP_693870.1 110835011 4213341 2456307..2456849 1 NC_008260.1 L-2,4-diaminobutyric acid acetyltransferase (EC 2.3.1.-) identified by sequence similarity; High confidence in function and specificity; DABA acetyltransferase 2456849 ectA 4213341 ectA Alcanivorax borkumensis SK2 DABA acetyltransferase YP_693870.1 2456307 D 393595 CDS YP_693871.1 110835012 4213342 2456896..2458215 1 NC_008260.1 catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 2458215 ectB 4213342 ectB Alcanivorax borkumensis SK2 diaminobutyrate--2-oxoglutarate aminotransferase YP_693871.1 2456896 D 393595 CDS YP_693872.1 110835013 4213343 2458283..2458681 1 NC_008260.1 N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid; L-ectoine synthase 2458681 ectC 4213343 ectC Alcanivorax borkumensis SK2 L-ectoine synthase YP_693872.1 2458283 D 393595 CDS YP_693873.1 110835014 4212073 complement(2458775..2459980) 1 NC_008260.1 hypothetical protein 2459980 4212073 ABO_2153 Alcanivorax borkumensis SK2 hypothetical protein YP_693873.1 2458775 R 393595 CDS YP_693874.1 110835015 4212212 2460573..2461223 1 NC_008260.1 identified by sequence similarity; InterPro: Response regulator receiver domain; Family membership; transcriptional regulator DegU 2461223 degU 4212212 degU Alcanivorax borkumensis SK2 transcriptional regulator DegU YP_693874.1 2460573 D 393595 CDS YP_693875.1 110835016 4212074 complement(2461493..2464960) 1 NC_008260.1 (two-component protein: Na-solute symporter/sensory box histidinekinase/response regulator ) identified by match to PFAM protein family HMMPF02518 and HMMPF00072; InterPro: Sodium:solute symporter family TMHMM: reportin 12 transmembrane helices; Family membership; Na-solute symporter/sensory box histidinekinase 2464960 4212074 ABO_2155 Alcanivorax borkumensis SK2 Na-solute symporter/sensory box histidinekinase YP_693875.1 2461493 R 393595 CDS YP_693876.1 110835017 4212075 complement(2465296..2465817) 1 NC_008260.1 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 2465817 4212075 ABO_2156 Alcanivorax borkumensis SK2 DNA polymerase III subunit epsilon YP_693876.1 2465296 R 393595 CDS YP_693877.1 110835018 4212076 complement(2465946..2467757) 1 NC_008260.1 identified by sequence similarity; Family membership; hypothetical protein 2467757 4212076 ABO_2157 Alcanivorax borkumensis SK2 hypothetical protein YP_693877.1 2465946 R 393595 CDS YP_693878.1 110835019 4212077 complement(2467873..2469669) 1 NC_008260.1 Na+/solute symporter, Sodium:solute symporter family, sss: SSS sodium solute transporter superfamily; Hypothetical protein; sodium/solute symporter 2469669 4212077 ABO_2158 Alcanivorax borkumensis SK2 sodium/solute symporter YP_693878.1 2467873 R 393595 CDS YP_693879.1 110835020 4212078 complement(2469702..2469959) 1 NC_008260.1 hypothetical protein 2469959 4212078 ABO_2159 Alcanivorax borkumensis SK2 hypothetical protein YP_693879.1 2469702 R 393595 CDS YP_693880.1 110835021 4212079 2470065..2470286 1 NC_008260.1 hypothetical protein 2470286 4212079 ABO_2160 Alcanivorax borkumensis SK2 hypothetical protein YP_693880.1 2470065 D 393595 CDS YP_693881.1 110835022 4212080 2470270..2470581 1 NC_008260.1 hypothetical protein 2470581 4212080 ABO_2161 Alcanivorax borkumensis SK2 hypothetical protein YP_693881.1 2470270 D 393595 CDS YP_693882.1 110835023 4212081 complement(2470692..2471636) 1 NC_008260.1 (Dihydrouridine synthase protein family, ); Function unclear; dihydrouridine synthase (Dus) superfamily protein 2471636 4212081 ABO_2162 Alcanivorax borkumensis SK2 dihydrouridine synthase (Dus) superfamily protein YP_693882.1 2470692 R 393595 CDS YP_693883.1 110835024 4212082 2472183..2473250 1 NC_008260.1 hypothetical protein 2473250 4212082 ABO_2163 Alcanivorax borkumensis SK2 hypothetical protein YP_693883.1 2472183 D 393595 CDS YP_693884.1 110835025 4211780 2473752..2473994 1 NC_008260.1 identified by match to PFAM protein family HMMPF02609 InterPro: Exonuclease VII small subunit; High confidence in function and specificity; exodeoxyribonuclease VII small subunit 2473994 xseB 4211780 xseB Alcanivorax borkumensis SK2 exodeoxyribonuclease VII small subunit YP_693884.1 2473752 D 393595 CDS YP_693885.1 110835026 4211695 2473984..2474892 1 NC_008260.1 (gppS) identified by sequence similarity; InterPro: Polyprenyl synthetase; Family membership; geranylgeranyl pyrophosphate synthetase 2474892 ggpS 4211695 ggpS Alcanivorax borkumensis SK2 geranylgeranyl pyrophosphate synthetase YP_693885.1 2473984 D 393595 CDS YP_693886.1 110835027 4213338 2475019..2476956 1 NC_008260.1 identified by sequencesimilarity; InterPro: Transketolase; High confidence in function and specificity; deoxyxylulose-5-phosphate synthase 2476956 dxs 4213338 dxs Alcanivorax borkumensis SK2 deoxyxylulose-5-phosphate synthase YP_693886.1 2475019 D 393595 CDS YP_693887.1 110835028 4212567 complement(2477027..2478235) 1 NC_008260.1 identified by sequence similarity; InterPro: Domain of unknown function DUF9; High confidence in function and specificity; diguanylate cyclase 2478235 rre2 4212567 rre2 Alcanivorax borkumensis SK2 diguanylate cyclase YP_693887.1 2477027 R 393595 CDS YP_693888.1 110835029 4211329 complement(2478329..2478814) 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; phosphatidylglycerophosphatase A 2478814 pgpA 4211329 pgpA Alcanivorax borkumensis SK2 phosphatidylglycerophosphatase A YP_693888.1 2478329 R 393595 CDS YP_693889.1 110835030 4211939 complement(2478897..2479874) 1 NC_008260.1 (thiamine monophosphate kinase) identified by sequencesimilarity; InterPro: AIR synthase related protein; High confidence in function and specificity; thiamine-phosphate kinase 2479874 thiL 4211939 thiL Alcanivorax borkumensis SK2 thiamine-phosphate kinase YP_693889.1 2478897 R 393595 CDS YP_693890.1 110835031 4211620 complement(2479925..2480377) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01029 InterPro: Antitermination protein NusB; High confidence in function and specificity; transcriptional terminator nusB 2480377 nusB 4211620 nusB Alcanivorax borkumensis SK2 transcriptional terminator nusB YP_693890.1 2479925 R 393595 CDS YP_693891.1 110835032 4212045 complement(2480426..2480896) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00114 InterPro: 67-dimethyl-8-ribityllumazine synthase; High confidence in function and specificity; riboflavin synthase subunit beta 2480896 ribH 4212045 ribH Alcanivorax borkumensis SK2 riboflavin synthase subunit beta YP_693891.1 2480426 R 393595 CDS YP_693892.1 110835033 4212215 complement(2481040..2482149) 1 NC_008260.1 bifunctional enzyme DHBP synthase/GTP cyclohydrolase II-like protein; functions in riboflavin synthesis; bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein 2482149 dhbP 4212215 dhbP Alcanivorax borkumensis SK2 bifunctional 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II-like protein YP_693892.1 2481040 R 393595 CDS YP_693893.1 110835034 4212043 complement(2482307..2482972) 1 NC_008260.1 catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 2482972 ribE 4212043 ribE Alcanivorax borkumensis SK2 riboflavin synthase subunit alpha YP_693893.1 2482307 R 393595 CDS YP_693894.1 110835035 4212042 complement(2483014..2484147) 1 NC_008260.1 (riboflavin biosynthesis protein RibD) identified by sequence similarity; InterPro: Riboflavin biosynthesis protein RibD; High confidence in function and specificity; (S)-2-hydroxy-fatty-acid dehydrogenase 2484147 ribD 4212042 ribD Alcanivorax borkumensis SK2 (S)-2-hydroxy-fatty-acid dehydrogenase YP_693894.1 2483014 R 393595 CDS YP_693895.1 110835036 4212083 complement(2484144..2484638) 1 NC_008260.1 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains Pfam: Sigma-70 region 3; Family membership; transcriptional regulator 2484638 4212083 ABO_2175 Alcanivorax borkumensis SK2 transcriptional regulator YP_693895.1 2484144 R 393595 CDS YP_693896.1 110835037 4212768 complement(2484813..2486069) 1 NC_008260.1 (serine hydroxymethyltransferase, serine methylase) identified by sequence similarity; identified by match to PFAM protein family HMMPF00464 InterPro: Serine hydroxymethyltransferase (SHMT); High confidence in function and specificity; serine hydroxymethyltransferase 2486069 glyA 4212768 glyA Alcanivorax borkumensis SK2 serine hydroxymethyltransferase YP_693896.1 2484813 R 393595 CDS YP_693897.1 110835038 4212084 2486334..2488001 1 NC_008260.1 ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein 2488001 4212084 ABO_2177 Alcanivorax borkumensis SK2 ABC transporter ATP-binding protein YP_693897.1 2486334 D 393595 CDS YP_693898.1 110835039 4212085 2488030..2488422 1 NC_008260.1 hypothetical protein 2488422 4212085 ABO_2178 Alcanivorax borkumensis SK2 hypothetical protein YP_693898.1 2488030 D 393595 CDS YP_693899.1 110835040 4212367 2488427..2489035 1 NC_008260.1 (rna polymerase sigma-e factor (sigma-24).) identified by sequence similarity; InterPro: Sigma factor ECF subfamily; Family membership; rna polymerase sigma-e factor 2489035 rpoE 4212367 rpoE Alcanivorax borkumensis SK2 rna polymerase sigma-e factor YP_693899.1 2488427 D 393595 CDS YP_693900.1 110835041 4212514 2489029..2489262 1 NC_008260.1 hypothetical protein 2489262 4212514 ABO_2180 Alcanivorax borkumensis SK2 hypothetical protein YP_693900.1 2489029 D 393595 CDS YP_693901.1 110835042 4212515 2489356..2489754 1 NC_008260.1 hypothetical protein 2489754 4212515 ABO_2181 Alcanivorax borkumensis SK2 hypothetical protein YP_693901.1 2489356 D 393595 CDS YP_693902.1 110835043 4212516 2490029..2491069 1 NC_008260.1 SAM (and some other nucleotide) binding motif; High confidence in function and specificity; arsenic (+3 oxidation state) methyltransferase 2491069 4212516 ABO_2182 Alcanivorax borkumensis SK2 arsenic (+3 oxidation state) methyltransferase YP_693902.1 2490029 D 393595 CDS YP_693903.1 110835044 4212517 2491161..2493305 1 NC_008260.1 (soluble pyridine nucleotide transhydrogenase) identified by sequencesimilarity; InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase belongs to the class-i of pyridine nucleotide- disulfide oxidoreductase family.; High confidence in function and specificity; mercuric reductase 2493305 4212517 ABO_2183 Alcanivorax borkumensis SK2 mercuric reductase YP_693903.1 2491161 D 393595 CDS YP_693904.1 110835045 4212518 2493377..2494159 1 NC_008260.1 (conserved hypothetical protein; hypothetical protein 2494159 4212518 ABO_2184 Alcanivorax borkumensis SK2 hypothetical protein YP_693904.1 2493377 D 393595 CDS YP_693905.1 110835046 4211647 complement(2494368..2495741) 1 NC_008260.1 Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 2495741 radA 4211647 radA Alcanivorax borkumensis SK2 DNA repair protein RadA YP_693905.1 2494368 R 393595 CDS YP_693906.1 110835047 4213284 complement(2496009..2497070) 1 NC_008260.1 identified by sequence similarity; InterPro: Alanine racemase catalytic activity: l-alanine = d-alanine. cofactor: pyridoxal phosphate (by similarity). pathway: d-alanine branch of peptidoglycan biosynthesis; first step.; High confidence in function and specificity; alanine racemase 2497070 dadX 4213284 dadX Alcanivorax borkumensis SK2 alanine racemase YP_693906.1 2496009 R 393595 CDS YP_693907.1 110835048 4211396 complement(2497161..2498555) 1 NC_008260.1 (groP), (grpA) identified by match to TIGR protein family HMMTIGR00665; High confidence in function and specificity; replicative DNA helicase 2498555 dnaB 4211396 dnaB Alcanivorax borkumensis SK2 replicative DNA helicase YP_693907.1 2497161 R 393595 CDS YP_693908.1 110835049 4212181 complement(2498808..2499260) 1 NC_008260.1 (ribosomal protein L9) identified by sequence similarity; InterPro: Ribosomal protein L9; High confidence in function and specificity; 50S ribosomal protein L9 2499260 rplI 4212181 rplI Alcanivorax borkumensis SK2 50S ribosomal protein L9 YP_693908.1 2498808 R 393595 CDS YP_693909.1 110835050 4212563 complement(2499276..2499506) 1 NC_008260.1 (ribosomal protein S18) identified by sequencesimilarity; InterPro: Ribosomal protein S18; High confidence in function and specificity; 30S ribosomal protein S18 2499506 rpsR 4212563 rpsR Alcanivorax borkumensis SK2 30S ribosomal protein S18 YP_693909.1 2499276 R 393595 CDS YP_693910.1 110835051 4212280 complement(2499529..2499837) 1 NC_008260.1 identified by match to PFAM protein family PF00436; High confidence in function and specificity; primosomal replication protein N 2499837 priB 4212280 priB Alcanivorax borkumensis SK2 primosomal replication protein N YP_693910.1 2499529 R 393595 CDS YP_693911.1 110835052 4212376 complement(2499840..2500181) 1 NC_008260.1 (ribosomal protein S6) identified by sequencesimilarity; InterPro: Ribosomal protein S6; High confidence in function and specificity; 30S ribosomal protein S6 2500181 rpsF 4212376 rpsF Alcanivorax borkumensis SK2 30S ribosomal protein S6 YP_693911.1 2499840 R 393595 CDS YP_693912.1 110835053 4211575 complement(2500562..2501317) 1 NC_008260.1 Family membership; RNA methyltransferase 2501317 yjfh 4211575 yjfh Alcanivorax borkumensis SK2 RNA methyltransferase YP_693912.1 2500562 R 393595 CDS YP_693913.1 110835054 4211957 complement(2501466..2503952) 1 NC_008260.1 identified by sequencesimilarity; InterPro: VacB and RNase II family 3-5 exoribonuclease; High confidence in function and specificity; ribonuclease R 2503952 vacB 4211957 vacB Alcanivorax borkumensis SK2 ribonuclease R YP_693913.1 2501466 R 393595 CDS YP_693914.1 110835055 4212519 2504198..2504440 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2504440 4212519 ABO_2194 Alcanivorax borkumensis SK2 hypothetical protein YP_693914.1 2504198 D 393595 CDS YP_693915.1 110835056 4212520 complement(2504504..2506174) 1 NC_008260.1 (multidrug efflux RND transporter ) identified by match to TIGR protein family HMMTIGR00915; hypothetical protein 2506174 4212520 ABO_2195 Alcanivorax borkumensis SK2 hypothetical protein YP_693915.1 2504504 R 393595 CDS YP_693916.1 110835057 4212521 complement(2506227..2508071) 1 NC_008260.1 conserved hypothetical protein, predicted phosphatase; hypothetical protein 2508071 4212521 ABO_2196 Alcanivorax borkumensis SK2 hypothetical protein YP_693916.1 2506227 R 393595 CDS YP_693917.1 110835058 4211140 complement(2508229..2509521) 1 NC_008260.1 (adenylosuccinate synthetase) identified by sequencesimilarity; InterPro: Adenylosuccinate synthetase; High confidence in function and specificity; adenylosuccinate synthetase 2509521 purA 4211140 purA Alcanivorax borkumensis SK2 adenylosuccinate synthetase YP_693917.1 2508229 R 393595 CDS YP_693918.1 110835059 4212522 complement(2509564..2510739) 1 NC_008260.1 identified by sequence similarity; belongs to class II aminoacyl-tRNA synthetases family as identified by match to TIGR protein family HMMTIGR00443; Function unclear; ATP phosphoribosyl transferase regulatory subunit 2510739 4212522 ABO_2198 Alcanivorax borkumensis SK2 ATP phosphoribosyl transferase regulatory subunit YP_693918.1 2509564 R 393595 CDS YP_693919.1 110835060 4212523 complement(2510740..2511000) 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2511000 4212523 ABO_2199 Alcanivorax borkumensis SK2 hypothetical protein YP_693919.1 2510740 R 393595 CDS YP_693920.1 110835061 4212193 complement(2511172..2512236) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01145; Specificity unclear; protease subunit HflC 2512236 hflC 4212193 hflC Alcanivorax borkumensis SK2 protease subunit HflC YP_693920.1 2511172 R 393595 CDS YP_693921.1 110835062 4212194 complement(2512236..2513408) 1 NC_008260.1 identified by sequence similarity.; Family membership; protease subunit HflK 2513408 hflK 4212194 hflK Alcanivorax borkumensis SK2 protease subunit HflK YP_693921.1 2512236 R 393595 CDS YP_693922.1 110835063 4212195 complement(2513446..2514888) 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; GTP-binding protein HflX 2514888 hflX 4212195 hflX Alcanivorax borkumensis SK2 GTP-binding protein HflX YP_693922.1 2513446 R 393595 CDS YP_693923.1 110835064 4212196 complement(2515111..2515392) 1 NC_008260.1 (hfg) identified by sequence similarity.; Family membership; host factor-I protein Hfg 2515392 hfq 4212196 hfq Alcanivorax borkumensis SK2 host factor-I protein Hfg YP_693923.1 2515111 R 393595 CDS YP_693924.1 110835065 4211582 complement(2515637..2516626) 1 NC_008260.1 (tRNA delta(2)-isopentenylpyrophosphatetransferase) identified by sequencesimilarity; InterPro: tRNA isopentenyltransferase; High confidence in function and specificity; tRNA isopentenyltransferase 2516626 miaA 4211582 miaA Alcanivorax borkumensis SK2 tRNA isopentenyltransferase YP_693924.1 2515637 R 393595 CDS YP_693925.1 110835066 4211248 complement(2516697..2518565) 1 NC_008260.1 This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 2518565 mutL 4211248 mutL Alcanivorax borkumensis SK2 DNA mismatch repair protein YP_693925.1 2516697 R 393595 CDS YP_693926.1 110835067 4213404 complement(2518664..2520019) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Cell wall hydrolase/autolysin; High confidence in function and specificity; N-acetylmuramoyl-L-alanine amidase 2520019 amiB 4213404 amiB Alcanivorax borkumensis SK2 N-acetylmuramoyl-L-alanine amidase YP_693926.1 2518664 R 393595 CDS YP_693927.1 110835068 4212524 complement(2520026..2520454) 1 NC_008260.1 (conserved hypothetical protein TIGR00150) identified by match to TIGR protein family HMMTIGR00150 InterPro: Uncharacterised P-loop hydrolase UPF0079; hypothetical protein 2520454 4212524 ABO_2207 Alcanivorax borkumensis SK2 hypothetical protein YP_693927.1 2520026 R 393595 CDS YP_693928.1 110835069 4212525 complement(2520451..2521971) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01256 InterPro: Uncharacterized protein family UPF0031; hypothetical protein 2521971 4212525 ABO_2208 Alcanivorax borkumensis SK2 hypothetical protein YP_693928.1 2520451 R 393595 CDS YP_693929.1 110835070 4212526 2522072..2523121 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00276 InterPro: Fe_S cluster binding; Conserved hypothetical protein; (Fe-S)-binding protein 2523121 4212526 ABO_2209 Alcanivorax borkumensis SK2 (Fe-S)-binding protein YP_693929.1 2522072 D 393595 CDS YP_693930.1 110835071 4211633 complement(2523189..2523734) 1 NC_008260.1 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease 2523734 orn 4211633 orn Alcanivorax borkumensis SK2 oligoribonuclease YP_693930.1 2523189 R 393595 CDS YP_693931.1 110835072 4212527 2523844..2524902 1 NC_008260.1 EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 2524902 4212527 ABO_2211 Alcanivorax borkumensis SK2 ribosome-associated GTPase YP_693931.1 2523844 D 393595 CDS YP_693932.1 110835073 4211192 2525028..2525843 1 NC_008260.1 identified by sequence similarity InterPro: Rhodanese/cdc25 fold; High confidence in function and specificity; thiosulfate sulfurtransferase 2525843 glpE 4211192 glpE Alcanivorax borkumensis SK2 thiosulfate sulfurtransferase YP_693932.1 2525028 D 393595 CDS YP_693933.1 110835074 4211226 2525914..2526789 1 NC_008260.1 identified by match to PFAM protein family HMMPF02666 InterPro: Phosphatidylserine decarboxylase; High confidence in function and specificity; phosphatidylserine decarboxylase 2526789 psd 4211226 psd Alcanivorax borkumensis SK2 phosphatidylserine decarboxylase YP_693933.1 2525914 D 393595 CDS YP_693934.1 110835075 4211332 2526920..2528080 1 NC_008260.1 Alpha/beta hydrolase fold, PHA_synth_III_C: poly(R)-hydroxyalkanoic acid synthase, class III, PhaC subunit; High confidence in function and specificity; polyhydroxyalkanoate synthase 2528080 phaC1 4211332 phaC1 Alcanivorax borkumensis SK2 polyhydroxyalkanoate synthase YP_693934.1 2526920 D 393595 CDS YP_693935.1 110835076 4212528 2528298..2529341 1 NC_008260.1 heptosyltransferase II; identified by sequence similarity; InterPro: Glycosyltransferase family 9 Members of this family belong to glycosyltransferase family 9. Lipopolysaccharide is a major component of the outer leaflet of the outer membrane in Gram-negative bacteria. It is composed of three domains; lipid A, Core oligosaccharide and the O-antigen. All of these enzymes transfer heptose to the lipopolysaccharide core.; High confidence in function and specificity; heptosyltransferase II 2529341 4212528 ABO_2215 Alcanivorax borkumensis SK2 heptosyltransferase II YP_693935.1 2528298 D 393595 CDS YP_693936.1 110835077 4212136 complement(2529471..2530115) 1 NC_008260.1 (dethiobiotin synthetase) identified by match to PFAM protein family HMMPF01656 InterPro: Cobyrinic acid ac-diamide synthase; High confidence in function and specificity; dethiobiotin synthase 2530115 bioD 4212136 bioD Alcanivorax borkumensis SK2 dethiobiotin synthase YP_693936.1 2529471 R 393595 CDS YP_693937.1 110835078 4212135 complement(2530295..2531173) 1 NC_008260.1 (biotin biosynthesis protein BioC) identified by sequence similarity; Hypothetical protein; biotin biosynthesis protein BioC 2531173 bioC 4212135 bioC Alcanivorax borkumensis SK2 biotin biosynthesis protein BioC YP_693937.1 2530295 R 393595 CDS YP_693938.1 110835079 4212138 complement(2531094..2531906) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; High confidence in function and specificity; biotin biosynthesis protein bioH 2531906 bioH 4212138 bioH Alcanivorax borkumensis SK2 biotin biosynthesis protein bioH YP_693938.1 2531094 R 393595 CDS YP_693939.1 110835080 4212137 complement(2531966..2533126) 1 NC_008260.1 identified by sequence similarity; InterPro: Aminotransferases class-I; High confidence in function and specificity; 8-amino-7-oxononanoate synthase 2533126 bioF 4212137 bioF Alcanivorax borkumensis SK2 8-amino-7-oxononanoate synthase YP_693939.1 2531966 R 393595 CDS YP_693940.1 110835081 4212134 complement(2533136..2534287) 1 NC_008260.1 (biotin synthetase) identified by sequencesimilarity; High confidence in function and specificity; biotin synthase 2534287 bioB 4212134 bioB Alcanivorax borkumensis SK2 biotin synthase YP_693940.1 2533136 R 393595 CDS YP_693941.1 110835082 4212529 2534333..2535076 1 NC_008260.1 (competence protein ComF ) identified by sequence similarity; hypothetical protein 2535076 4212529 ABO_2221 Alcanivorax borkumensis SK2 hypothetical protein YP_693941.1 2534333 D 393595 CDS YP_693942.1 110835083 4212530 2535615..2536298 1 NC_008260.1 Family membership; phosphoric monoester hydrolase 2536298 4212530 ABO_2222 Alcanivorax borkumensis SK2 phosphoric monoester hydrolase YP_693942.1 2535615 D 393595 CDS YP_693943.1 110835084 4211805 2536393..2537637 1 NC_008260.1 identified by sequencesimilarity; High confidence in function and specificity; acyl-CoA dehydrogenase 2537637 acdA 4211805 acdA Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_693943.1 2536393 D 393595 CDS YP_693944.1 110835085 4212531 2538007..2538702 1 NC_008260.1 hypothetical protein 2538702 4212531 ABO_2224 Alcanivorax borkumensis SK2 hypothetical protein YP_693944.1 2538007 D 393595 CDS YP_693945.1 110835086 4211604 2538771..2539115 1 NC_008260.1 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 2539115 phhB 4211604 phhB Alcanivorax borkumensis SK2 pterin-4-alpha-carbinolamine dehydratase YP_693945.1 2538771 D 393595 CDS YP_693946.1 110835087 4212532 2539231..2539689 1 NC_008260.1 hypothetical protein 2539689 4212532 ABO_2226 Alcanivorax borkumensis SK2 hypothetical protein YP_693946.1 2539231 D 393595 CDS YP_693947.1 110835088 4212185 complement(2539837..2540898) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Uroporphyrinogen decarboxylase (URO-D); High confidence in function and specificity; uroporphyrinogen decarboxylase 2540898 hemE 4212185 hemE Alcanivorax borkumensis SK2 uroporphyrinogen decarboxylase YP_693947.1 2539837 R 393595 CDS YP_693948.1 110835089 4211196 complement(2541034..2542455) 1 NC_008260.1 glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta 2542455 gltD 4211196 gltD Alcanivorax borkumensis SK2 glutamate synthase subunit beta YP_693948.1 2541034 R 393595 CDS YP_693949.1 110835090 4211195 complement(2542467..2546930) 1 NC_008260.1 catalyzes the formation of glutamate from glutamine and alpha-ketoglutarate; glutamate synthase subunit alpha 2546930 gltB 4211195 gltB Alcanivorax borkumensis SK2 glutamate synthase subunit alpha YP_693949.1 2542467 R 393595 CDS YP_693950.1 110835091 4211699 complement(2547073..2548614) 1 NC_008260.1 hypothetical protein 2548614 4211699 ABO_2230 Alcanivorax borkumensis SK2 hypothetical protein YP_693950.1 2547073 R 393595 CDS YP_693951.1 110835092 4213485 complement(2548565..2549644) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF01761 InterPro: 3-dehydroquinate synthase; High confidence in function and specificity; 3-dehydroquinate synthase 2549644 aroB 4213485 aroB Alcanivorax borkumensis SK2 3-dehydroquinate synthase YP_693951.1 2548565 R 393595 CDS YP_693952.1 110835093 4213490 complement(2549705..2550196) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF01202; InterPro: Shikimate kinase; High confidence in function and specificity; shikimate kinase 2550196 aroK 4213490 aroK Alcanivorax borkumensis SK2 shikimate kinase YP_693952.1 2549705 R 393595 CDS YP_693953.1 110835094 4211383 complement(2550238..2552409) 1 NC_008260.1 InterPro: General (type II) secretion pathway (GSP) D protein; Hypothetical protein; fimbrial assembly protein PilQ 2552409 pilQ 4211383 pilQ Alcanivorax borkumensis SK2 fimbrial assembly protein PilQ YP_693953.1 2550238 R 393595 CDS YP_693954.1 110835095 4211382 complement(2552430..2552957) 1 NC_008260.1 Hypothetical protein; type 4 fimbrial biogenesis protein PilP 2552957 pilP 4211382 pilP Alcanivorax borkumensis SK2 type 4 fimbrial biogenesis protein PilP YP_693954.1 2552430 R 393595 CDS YP_693955.1 110835096 4211381 complement(2552972..2553649) 1 NC_008260.1 Hypothetical protein; Type 4 fimbrial biogenesis protein pilO 2553649 pilO 4211381 pilO Alcanivorax borkumensis SK2 Type 4 fimbrial biogenesis protein pilO YP_693955.1 2552972 R 393595 CDS YP_693956.1 110835097 4211380 complement(2553649..2554215) 1 NC_008260.1 Hypothetical protein; type IV pili biogenesis protein PilN 2554215 pilN 4211380 pilN Alcanivorax borkumensis SK2 type IV pili biogenesis protein PilN YP_693956.1 2553649 R 393595 CDS YP_693957.1 110835098 4211378 complement(2554215..2555279) 1 NC_008260.1 Hypothetical protein; type IV fimbrial biogenesis protein PilM 2555279 pilM 4211378 pilM Alcanivorax borkumensis SK2 type IV fimbrial biogenesis protein PilM YP_693957.1 2554215 R 393595 CDS YP_693958.1 110835099 4211364 2555479..2558043 1 NC_008260.1 Penicillin-binding protein 1A (PBP-1a) (PBP1a),(Penicillin-insensitive transglycosylase),(Peptidoglycan TGase);(Penicillin-sensitive transpeptidase),(DD-transpeptidase)]. identified by sequence similarity; InterPro: Penicillin binding protein transpeptidase domain; High confidence in function and specificity; penicillin-binding protein 2558043 mrcA 4211364 mrcA Alcanivorax borkumensis SK2 penicillin-binding protein YP_693958.1 2555479 D 393595 CDS YP_693959.1 110835100 4211494 complement(2558154..2559428) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00390 InterPro: Malic enzymes; High confidence in function and specificity; malic enzyme 2559428 maeB 4211494 maeB Alcanivorax borkumensis SK2 malic enzyme YP_693959.1 2558154 R 393595 CDS YP_693960.1 110835101 4212299 complement(2559537..2559755) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01197 InterPro: Ribosomal protein L31; High confidence in function and specificity; 50S ribosomal protein L31 2559755 rpmE 4212299 rpmE Alcanivorax borkumensis SK2 50S ribosomal protein L31 YP_693960.1 2559537 R 393595 CDS YP_693961.1 110835102 4212279 2559893..2562067 1 NC_008260.1 identified by sequencesimilarity; InterPro: DEAD/DEAH box helicase; High confidence in function and specificity; primosomal protein N` 2562067 priA 4212279 priA Alcanivorax borkumensis SK2 primosomal protein N` YP_693961.1 2559893 D 393595 CDS YP_693962.1 110835103 4213484 2562196..2563950 1 NC_008260.1 catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 2563950 argS 4213484 argS Alcanivorax borkumensis SK2 arginyl-tRNA synthetase YP_693962.1 2562196 D 393595 CDS YP_693963.1 110835104 4211700 2563950..2564588 1 NC_008260.1 hypothetical protein 2564588 4211700 ABO_2243 Alcanivorax borkumensis SK2 hypothetical protein YP_693963.1 2563950 D 393595 CDS YP_693964.1 110835105 4211336 2564724..2565266 1 NC_008260.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 2565266 hslV 4211336 hslV Alcanivorax borkumensis SK2 ATP-dependent protease peptidase subunit YP_693964.1 2564724 D 393595 CDS YP_693965.1 110835106 4211335 2565269..2566606 1 NC_008260.1 heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 2566606 hslU 4211335 hslU Alcanivorax borkumensis SK2 ATP-dependent protease ATP-binding subunit HslU YP_693965.1 2565269 D 393595 CDS YP_693966.1 110835107 4211723 2567333..2568163 1 NC_008260.1 (ubiquinone biosynthesis methyltransferase) identified by sequence similarity; InterPro: ubiE/COQ5 methyltransferase; Family membership; methyltransferase, ubiquinone biosynthesis 2568163 ubiE 4211723 ubiE Alcanivorax borkumensis SK2 methyltransferase, ubiquinone biosynthesis YP_693966.1 2567333 D 393595 CDS YP_693967.1 110835108 4211701 2568160..2568846 1 NC_008260.1 hypothetical protein 2568846 4211701 ABO_2247 Alcanivorax borkumensis SK2 hypothetical protein YP_693967.1 2568160 D 393595 CDS YP_693968.1 110835109 4211702 2568864..2570450 1 NC_008260.1 (conserved hypothetical protein) identified by Glimmer2; InterPro: ABC1 family; High confidence in function and specificity; ubiquinone biosynthesis protein 2570450 4211702 ABO_2248 Alcanivorax borkumensis SK2 ubiquinone biosynthesis protein YP_693968.1 2568864 D 393595 CDS YP_693969.1 110835110 4212201 2570541..2570876 1 NC_008260.1 catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 2570876 hisE 4212201 hisE Alcanivorax borkumensis SK2 phosphoribosyl-ATP pyrophosphatase YP_693969.1 2570541 D 393595 CDS YP_693970.1 110835111 4211986 2570918..2571157 1 NC_008260.1 High confidence in function and specificity; sec-independent protein translocase protein tatA/E-like protein 2571157 tatA 4211986 tatA Alcanivorax borkumensis SK2 sec-independent protein translocase protein tatA/E-like protein YP_693970.1 2570918 D 393595 CDS YP_693971.1 110835112 4211987 2571218..2571610 1 NC_008260.1 Family membership; Sec-independent protein translocase TatB 2571610 tatB 4211987 tatB Alcanivorax borkumensis SK2 Sec-independent protein translocase TatB YP_693971.1 2571218 D 393595 CDS YP_693972.1 110835113 4211988 2571603..2572349 1 NC_008260.1 identified by match to PFAM protein family HMMPF00902 InterPro: Uncharacterized protein family UPF0032; Family membership; Sec-independent periplasmic protein translocator TatC 2572349 tatC 4211988 tatC Alcanivorax borkumensis SK2 Sec-independent periplasmic protein translocator TatC YP_693972.1 2571603 D 393595 CDS YP_693973.1 110835114 4211703 complement(2572570..2573517) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01738 InterPro: Esterase/lipase/thioesterase family active site; Specificity unclear; lipoprotein 2573517 4211703 ABO_2253 Alcanivorax borkumensis SK2 lipoprotein YP_693973.1 2572570 R 393595 CDS YP_693974.1 110835115 4211704 complement(2573496..2575319) 1 NC_008260.1 hypothetical protein 2575319 4211704 ABO_2254 Alcanivorax borkumensis SK2 hypothetical protein YP_693974.1 2573496 R 393595 CDS YP_693975.1 110835116 4211705 complement(2575428..2575910) 1 NC_008260.1 hypothetical protein 2575910 4211705 ABO_2255 Alcanivorax borkumensis SK2 hypothetical protein YP_693975.1 2575428 R 393595 CDS YP_693976.1 110835117 4211414 complement(2576084..2576521) 1 NC_008260.1 hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase 2576521 dtD 4211414 dtD Alcanivorax borkumensis SK2 D-tyrosyl-tRNA(Tyr) deacylase YP_693976.1 2576084 R 393595 CDS YP_693977.1 110835119 4211388 complement(2576518..2577441) 1 NC_008260.1 identified by sequence similarity; InterPro: Alpha/beta hydrolase fold; High confidence in function and specificity; proline iminopeptidase (PIP) 2577441 pip 4211388 pip Alcanivorax borkumensis SK2 proline iminopeptidase (PIP) YP_693977.1 2576518 R 393595 CDS YP_693978.1 110835118 4211706 2577440..2577814 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2577814 4211706 ABO_2258 Alcanivorax borkumensis SK2 hypothetical protein YP_693978.1 2577440 D 393595 CDS YP_693979.1 110835120 4211675 complement(2577911..2579344) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Sigma-54 factor interaction domain; High confidence in function and specificity; two-component response regulator NtrC 2579344 ntrC 4211675 ntrC Alcanivorax borkumensis SK2 two-component response regulator NtrC YP_693979.1 2577911 R 393595 CDS YP_693980.1 110835121 4211674 complement(2579425..2580528) 1 NC_008260.1 identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; High confidence in function and specificity; sensory box histidine kinase NtrB 2580528 ntrB 4211674 ntrB Alcanivorax borkumensis SK2 sensory box histidine kinase NtrB YP_693980.1 2579425 R 393595 CDS YP_693981.1 110835122 4211707 complement(2580670..2581446) 1 NC_008260.1 (conserved hypothetical protein) identified by sequencesimilarity; hypothetical protein 2581446 4211707 ABO_2261 Alcanivorax borkumensis SK2 hypothetical protein YP_693981.1 2580670 R 393595 CDS YP_693982.1 110835123 4211183 complement(2581577..2582983) 1 NC_008260.1 (glutamine synthetase type I, glutamate-ammonia ligase) identified by sequence similarity; identified by match to TIGRFAM protein family HMMTIGR00653; High confidence in function and specificity; glutamine synthetase, type I 2582983 glnA 4211183 glnA Alcanivorax borkumensis SK2 glutamine synthetase, type I YP_693982.1 2581577 R 393595 CDS YP_693983.1 110835124 4211708 complement(2583213..2583464) 1 NC_008260.1 hypothetical protein 2583464 4211708 ABO_2263 Alcanivorax borkumensis SK2 hypothetical protein YP_693983.1 2583213 R 393595 CDS YP_693984.1 110835125 4211928 complement(2583471..2584556) 1 NC_008260.1 identified by sequencesimilarity.; High confidence in function and specificity; tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 2584556 trmU 4211928 trmU Alcanivorax borkumensis SK2 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase YP_693984.1 2583471 R 393595 CDS YP_693985.1 110835126 4211709 complement(2584659..2586500) 1 NC_008260.1 InterPro: Sulfatase; hypothetical protein 2586500 4211709 ABO_2265 Alcanivorax borkumensis SK2 hypothetical protein YP_693985.1 2584659 R 393595 CDS YP_693986.1 110835127 4211710 complement(2586554..2587546) 1 NC_008260.1 hypothetical protein 2587546 4211710 ABO_2266 Alcanivorax borkumensis SK2 hypothetical protein YP_693986.1 2586554 R 393595 CDS YP_693987.1 110835128 4211711 complement(2587546..2589081) 1 NC_008260.1 identified by match to PFAM protein family HMMPF04093; hypothetical protein 2589081 4211711 ABO_2267 Alcanivorax borkumensis SK2 hypothetical protein YP_693987.1 2587546 R 393595 CDS YP_693988.1 110835129 4211712 complement(2589081..2589686) 1 NC_008260.1 identified by sequence similarity; hypothetical protein 2589686 4211712 ABO_2268 Alcanivorax borkumensis SK2 hypothetical protein YP_693988.1 2589081 R 393595 CDS YP_693989.1 110835130 4211834 2589952..2591760 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01394 InterPro: GTP-binding elongation factor; High confidence in function and specificity; GTP-binding protein TypA 2591760 typA 4211834 typA Alcanivorax borkumensis SK2 GTP-binding protein TypA YP_693989.1 2589952 D 393595 CDS YP_693990.1 110835131 4211713 complement(2591837..2592172) 1 NC_008260.1 (oxidoreductase aldo/keto reductase family) identified by match to TIGR protein family HMMTIGR01293; hypothetical protein 2592172 4211713 ABO_2270 Alcanivorax borkumensis SK2 hypothetical protein YP_693990.1 2591837 R 393595 CDS YP_693991.1 110835132 4211926 2592434..2592904 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00185 InterPro: RNA methyltransferase TrmH family group 2; Family membership; RNA methyltransferase 2592904 trmH 4211926 trmH Alcanivorax borkumensis SK2 RNA methyltransferase YP_693991.1 2592434 D 393595 CDS YP_693992.1 110835133 4212645 complement(2593044..2593517) 1 NC_008260.1 identified by sequence similarity; InterPro: Bacterial protein export chaperone SecB; High confidence in function and specificity; protein-transport protein SecB 2593517 secB 4212645 secB Alcanivorax borkumensis SK2 protein-transport protein SecB YP_693992.1 2593044 R 393595 CDS YP_693993.1 110835134 4211714 complement(2593530..2593790) 1 NC_008260.1 (glutaredoxin, ) identified by match to PFAM protein family HMMPF00462 InterPro: Glutaredoxin; High confidence in function and specificity; glutaredoxin 2593790 4211714 ABO_2273 Alcanivorax borkumensis SK2 glutaredoxin YP_693993.1 2593530 R 393595 CDS YP_693994.1 110835135 4211715 complement(2593804..2594220) 1 NC_008260.1 (rhodanese domain protein, ) identified by similarity to PFAMB protein family PB095705 PB094266 PB093724 PB092780 PB092388 PB091758 PB086012 PB074034 PB071888 PB045826 PB027182 PB012820 PB012628 PB009308 PB006481; InterPro: Rhodanese/cdc25 fold; Family membership; rhodanese domain-containing protein 2594220 4211715 ABO_2274 Alcanivorax borkumensis SK2 rhodanese domain-containing protein YP_693994.1 2593804 R 393595 CDS YP_693995.1 110835136 4211716 2594356..2595531 1 NC_008260.1 hypothetical protein 2595531 4211716 ABO_2275 Alcanivorax borkumensis SK2 hypothetical protein YP_693995.1 2594356 D 393595 CDS YP_693996.1 110835137 4213658 2595583..2596884 1 NC_008260.1 identified by match to PFAM protein family HMMPF03572 InterPro: Carboxyl-terminal protease; High confidence in function and specificity; carboxyl-terminal protease 2596884 ctpA 4213658 ctpA Alcanivorax borkumensis SK2 carboxyl-terminal protease YP_693996.1 2595583 D 393595 CDS YP_693997.1 110835138 4211717 2596884..2597663 1 NC_008260.1 hypothetical protein 2597663 4211717 ABO_2277 Alcanivorax borkumensis SK2 hypothetical protein YP_693997.1 2596884 D 393595 CDS YP_693998.1 110835139 4212202 complement(2597921..2598697) 1 NC_008260.1 catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2598697 hisF 4212202 hisF Alcanivorax borkumensis SK2 imidazole glycerol phosphate synthase subunit HisF YP_693998.1 2597921 R 393595 CDS YP_693999.1 110835140 4212197 complement(2598714..2599490) 1 NC_008260.1 (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met hylideneamino] imidazole-4-carboxamide isomerase, phosphoribosylformimino-5-aminoimidazolecarboxamide ribotide isomerase) identified by sequence similarity; identified by match to TIGRFAM protein family HMMTIGR00007 InterPro: Histidine biosynthesis protein; High confidence in function and specificity; phosphoribosylformimino-5-aminoimidazolecarboxam ide ribotide 2599490 hisA 4212197 hisA Alcanivorax borkumensis SK2 phosphoribosylformimino-5-aminoimidazolecarboxam ide ribotide YP_693999.1 2598714 R 393595 CDS YP_694000.1 110835141 4212203 complement(2599559..2600200) 1 NC_008260.1 (glutamine amidotransferase, imidazole glycerol phosphate synthase subunit hisH) identified by sequence similarity; identified by match to PFAM protein family HMMPF00117 InterPro: Glutamine amidotransferase class-I; High confidence in function and specificity; glutamine amidotransferase subunit hisH 2600200 hisH 4212203 hisH Alcanivorax borkumensis SK2 glutamine amidotransferase subunit hisH YP_694000.1 2599559 R 393595 CDS YP_694001.1 110835142 4212198 complement(2600236..2600850) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF00475 InterPro: Imidazoleglycerol-phosphate dehydratase; High confidence in function and specificity; imidazoleglycerol-phosphate dehydratase 2600850 hisB 4212198 hisB Alcanivorax borkumensis SK2 imidazoleglycerol-phosphate dehydratase YP_694001.1 2600236 R 393595 CDS YP_694002.1 110835143 4211718 2600920..2601243 1 NC_008260.1 hypothetical protein 2601243 4211718 ABO_2282 Alcanivorax borkumensis SK2 hypothetical protein YP_694002.1 2600920 D 393595 CDS YP_694003.1 110835144 4213355 complement(2601244..2603199) 1 NC_008260.1 (sensor histidine kinase, ) identified by match to PFAM protein family HMMPF02518 InterPro: Histidine kinase C-terminal; Family membership; sensor histidine kinase 2603199 4213355 ABO_2283 Alcanivorax borkumensis SK2 sensor histidine kinase YP_694003.1 2601244 R 393595 CDS YP_694004.1 110835145 4213356 2603277..2605484 1 NC_008260.1 hypothetical protein 2605484 4213356 ABO_2284 Alcanivorax borkumensis SK2 hypothetical protein YP_694004.1 2603277 D 393595 CDS YP_694005.1 110835146 4211251 2605587..2606663 1 NC_008260.1 identified by sequence similarity; InterPro: HhH-GPD; High confidence in function and specificity; A/G-specific adenine glycosylase 2606663 mutY 4211251 mutY Alcanivorax borkumensis SK2 A/G-specific adenine glycosylase YP_694005.1 2605587 D 393595 CDS YP_694006.1 110835147 4213357 2606709..2606993 1 NC_008260.1 hypothetical protein 2606993 4213357 ABO_2286 Alcanivorax borkumensis SK2 hypothetical protein YP_694006.1 2606709 D 393595 CDS YP_694007.1 110835148 4213358 complement(2607404..2607529) 1 NC_008260.1 (transposase, ) identified by sequence similarity; High confidence in function and specificity; transposase 2607529 4213358 ABO_2287 Alcanivorax borkumensis SK2 transposase YP_694007.1 2607404 R 393595 CDS YP_694008.1 110835149 4211636 2608295..2609707 1 NC_008260.1 P450, cytochrome p450 (conserved hypothetical protein) very GP:2588989; identified by sequencesimilarity; High confidence in function and specificity; cytochrome P450 2609707 p450 4211636 p450 Alcanivorax borkumensis SK2 cytochrome P450 YP_694008.1 2608295 D 393595 CDS YP_694009.1 110835150 4213359 2610012..2610800 1 NC_008260.1 identified by sequence similarity; hypothetical protein 2610800 4213359 ABO_2289 Alcanivorax borkumensis SK2 hypothetical protein YP_694009.1 2610012 D 393595 CDS YP_694010.1 110835151 4212039 complement(2611095..2612525) 1 NC_008260.1 catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase 2612525 rfaE 4212039 rfaE Alcanivorax borkumensis SK2 bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase YP_694010.1 2611095 R 393595 CDS YP_694011.1 110835152 4213360 2612723..2613889 1 NC_008260.1 (permease and transmembrane protein, ); identify by sequence similarity to PFAM, PB096426 PB094699 PB074947 PB047492 PB044947 PB037484 PB001524; Conserved hypothetical protein; hypothetical protein 2613889 4213360 ABO_2291 Alcanivorax borkumensis SK2 hypothetical protein YP_694011.1 2612723 D 393595 CDS YP_694012.1 110835153 4211465 2613897..2614811 1 NC_008260.1 (lipid A biosynthesis lauroyl acyltransferase) identified by sequence similarity; The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase (EC 2.3.1.-), transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; High confidence in function and specificity; lipid A biosynthesis lauroyl acyltransferase 2614811 lpxL1 4211465 lpxL1 Alcanivorax borkumensis SK2 lipid A biosynthesis lauroyl acyltransferase YP_694012.1 2613897 D 393595 CDS YP_694013.1 110835154 4213361 complement(2614814..2616127) 1 NC_008260.1 (permease and transmembrane protein, ); identify by sequence similarity to PFAM, PB096426 PB094699 PB074947 PB047492 PB044947 PB037484 PB001524; Conserved hypothetical protein; hypothetical protein 2616127 4213361 ABO_2293 Alcanivorax borkumensis SK2 hypothetical protein YP_694013.1 2614814 R 393595 CDS YP_694014.1 110835155 4213362 complement(2616253..2617575) 1 NC_008260.1 identify by sequence similarity KDO kinase-like domain; hypothetical protein 2617575 4213362 ABO_2294 Alcanivorax borkumensis SK2 hypothetical protein YP_694014.1 2616253 R 393595 CDS YP_694015.1 110835156 4213363 complement(2617572..2618465) 1 NC_008260.1 (yibd) (glycosyl transferase group 2 family protein) identified by match to PFAM protein family HMMPF00535; High confidence in function and specificity; glycosyltransferase 2618465 4213363 ABO_2295 Alcanivorax borkumensis SK2 glycosyltransferase YP_694015.1 2617572 R 393595 CDS YP_694016.1 110835157 4211964 complement(2618462..2619310) 1 NC_008260.1 (rfaP) (Lipopolysaccharide core biosynthesis protein (WaaP)) identified by sequence similarity.; High confidence in function and specificity; lipopolysaccharide core kinase 2619310 waaP2 4211964 waaP2 Alcanivorax borkumensis SK2 lipopolysaccharide core kinase YP_694016.1 2618462 R 393595 CDS YP_694017.1 110835158 4211962 complement(2619307..2620401) 1 NC_008260.1 (rfag) (lipopolysaccharide core biosynthesis protein, glucosyltransferase family 1) identified by match to PFAM protein family HMMPF00534 InterPro: Glycosyl transferases group 1; High confidence in function and specificity; UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase 2620401 waaG 4211962 waaG Alcanivorax borkumensis SK2 UDP-glucose:(heptosyl) LPS alpha1,3-glucosyltransferase YP_694017.1 2619307 R 393595 CDS YP_694018.1 110835159 4211960 complement(2620398..2621423) 1 NC_008260.1 (heptosyltransferase I); High confidence in function and specificity; lipopolysaccharide heptosyltransferase I 2621423 waaC 4211960 waaC Alcanivorax borkumensis SK2 lipopolysaccharide heptosyltransferase I YP_694018.1 2620398 R 393595 CDS YP_694019.1 110835160 4211963 complement(2621427..2622215) 1 NC_008260.1 identified by sequence similarity.; Family membership; lipopolysaacharide kinase 2622215 waaP1 4211963 waaP1 Alcanivorax borkumensis SK2 lipopolysaacharide kinase YP_694019.1 2621427 R 393595 CDS YP_694020.1 110835161 4211961 complement(2622208..2623263) 1 NC_008260.1 (ADP-heptose--LPS heptosyltransferase II, ); identify by similarity to InterPro IPR002201 and PFAM protein family PF01075. InterPro IPR002201; Glyco_trans_9. lipopolysaccharide core biosynthesis.; High confidence in function and specificity; ADP-heptose LPS heptosyltransferase II 2623263 waaF 4211961 waaF Alcanivorax borkumensis SK2 ADP-heptose LPS heptosyltransferase II YP_694020.1 2622208 R 393595 CDS YP_694021.1 110835162 4211198 complement(2623272..2624198) 1 NC_008260.1 catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 2624198 ilvE 4211198 ilvE Alcanivorax borkumensis SK2 branched-chain amino acid aminotransferase YP_694021.1 2623272 R 393595 CDS YP_694022.1 110835163 4211185 complement(2624241..2627105) 1 NC_008260.1 identified by sequencesimilarity; High confidence in function and specificity; glutamate-ammonia-ligase adenylyltransferase 2627105 glnE 4211185 glnE Alcanivorax borkumensis SK2 glutamate-ammonia-ligase adenylyltransferase YP_694022.1 2624241 R 393595 CDS YP_694023.1 110835164 4213364 complement(2627311..2629122) 1 NC_008260.1 (type II secretion system protein, ) identified by sequence similarity and match to PFAM protein family HMMPF00437 Type II traffic warden ATPase; Pectic enzymes secretion protein outE InterPro: Bacterial type II secretion system protein E; Family membership; type II secretion system protein 2629122 4213364 ABO_2303 Alcanivorax borkumensis SK2 type II secretion system protein YP_694023.1 2627311 R 393595 CDS YP_694024.1 110835165 4213365 2629424..2630104 1 NC_008260.1 identify by sequence similarity; hypothetical protein 2630104 4213365 ABO_2304 Alcanivorax borkumensis SK2 hypothetical protein YP_694024.1 2629424 D 393595 CDS YP_694025.1 110835166 4213366 2630115..2631383 1 NC_008260.1 (phosphate transporter, ) identified by match to PFAM protein family HMMPF01384 InterPro: Phosphate transporter family; High confidence in function and specificity; phosphate transporter 2631383 4213366 ABO_2305 Alcanivorax borkumensis SK2 phosphate transporter YP_694025.1 2630115 D 393595 CDS YP_694026.2 162139945 4213476 2631518..2632846 1 NC_008260.1 catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase 2632846 argA 4213476 argA Alcanivorax borkumensis SK2 N-acetylglutamate synthase YP_694026.2 2631518 D 393595 CDS YP_694027.1 110835168 4213367 complement(2633276..2633803) 1 NC_008260.1 hypothetical protein 2633803 4213367 ABO_2307 Alcanivorax borkumensis SK2 hypothetical protein YP_694027.1 2633276 R 393595 CDS YP_694028.1 110835169 4213368 complement(2633881..2635389) 1 NC_008260.1 hypothetical protein 2635389 4213368 ABO_2308 Alcanivorax borkumensis SK2 hypothetical protein YP_694028.1 2633881 R 393595 CDS YP_694029.1 110835170 4213369 complement(2635371..2635937) 1 NC_008260.1 hypothetical protein 2635937 4213369 ABO_2309 Alcanivorax borkumensis SK2 hypothetical protein YP_694029.1 2635371 R 393595 CDS YP_694030.1 110835171 4213370 complement(2635976..2636290) 1 NC_008260.1 hypothetical protein 2636290 4213370 ABO_2310 Alcanivorax borkumensis SK2 hypothetical protein YP_694030.1 2635976 R 393595 CDS YP_694031.1 110835172 4213371 complement(2636366..2636824) 1 NC_008260.1 hypothetical protein 2636824 4213371 ABO_2311 Alcanivorax borkumensis SK2 hypothetical protein YP_694031.1 2636366 R 393595 CDS YP_694032.1 110835173 4211354 2637631..2639634 1 NC_008260.1 (ilvD-2) identified by sequence similarity; identified by match to PFAM protein family HMMPF00920 InterPro: Dihydroxy-acid dehydratase; High confidence in function and specificity; dihydroxy-acid dehydratase 2639634 ilvD2 4211354 ilvD2 Alcanivorax borkumensis SK2 dihydroxy-acid dehydratase YP_694032.1 2637631 D 393595 CDS YP_694033.1 110835174 4211416 2639797..2641113 1 NC_008260.1 2-hydroxychromene-2-carboxylate isomerase identified by sequencesimilarity; InterPro: 2-hydroxychromene-2-carboxylate isomerase; High confidence in function and specificity; 2-hydroxychromene-2-carboxylate isomerase 2641113 nahD 4211416 nahD Alcanivorax borkumensis SK2 2-hydroxychromene-2-carboxylate isomerase YP_694033.1 2639797 D 393595 CDS YP_694034.1 110835175 4213372 2641165..2641722 1 NC_008260.1 identified by match to PFAM protein family HMMPF01124; hypothetical protein 2641722 4213372 ABO_2314 Alcanivorax borkumensis SK2 hypothetical protein YP_694034.1 2641165 D 393595 CDS YP_694035.1 110835176 4213373 2641583..2642809 1 NC_008260.1 oxidoreductase iron-sulfur-binding identified by match to PFAM protein family HMMPF00970; Family membership; (Fe-S)-binding protein 2642809 4213373 ABO_2315 Alcanivorax borkumensis SK2 (Fe-S)-binding protein YP_694035.1 2641583 D 393595 CDS YP_694036.1 110835177 4213687 2642934..2644223 1 NC_008260.1 Function unclear; paraquat-inducible protein A 2644223 4213687 ABO_2316 Alcanivorax borkumensis SK2 paraquat-inducible protein A YP_694036.1 2642934 D 393595 CDS YP_694037.1 110835178 4213688 2644220..2645833 1 NC_008260.1 (PqiB family protein) identified by sequence similarity; Family membership; paraquat-inducible protein B 2645833 4213688 ABO_2317 Alcanivorax borkumensis SK2 paraquat-inducible protein B YP_694037.1 2644220 D 393595 CDS YP_694038.1 110835179 4213689 2645830..2646339 1 NC_008260.1 hypothetical protein 2646339 4213689 ABO_2318 Alcanivorax borkumensis SK2 hypothetical protein YP_694038.1 2645830 D 393595 CDS YP_694039.1 110835180 4212191 complement(2646453..2647685) 1 NC_008260.1 identified by sequence similarity; InterPro: TPR repeat; Hypothetical protein; hemY protein 2647685 hemY 4212191 hemY Alcanivorax borkumensis SK2 hemY protein YP_694039.1 2646453 R 393595 CDS YP_694040.1 110835181 4212190 complement(2647682..2648647) 1 NC_008260.1 identified by sequence similarity; Hypothetical protein; uroporphyrin-III C-methyltransferase 2648647 hemX 4212190 hemX Alcanivorax borkumensis SK2 uroporphyrin-III C-methyltransferase YP_694040.1 2647682 R 393595 CDS YP_694041.1 110835182 4212184 complement(2648830..2649561) 1 NC_008260.1 (uroporphyrinogen-III synthetase) identified by sequencesimilarity; InterPro: Uroporphyrinogen III synthase HEM4; Family membership; uroporphyrinogen-III synthase 2649561 hemD 4212184 hemD Alcanivorax borkumensis SK2 uroporphyrinogen-III synthase YP_694041.1 2648830 R 393595 CDS YP_694042.1 110835183 4212667 complement(2649558..2650490) 1 NC_008260.1 transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 2650490 hemC 4212667 hemC Alcanivorax borkumensis SK2 porphobilinogen deaminase YP_694042.1 2649558 R 393595 CDS YP_694043.1 110835184 4213605 complement(2650854..2651594) 1 NC_008260.1 (Alginate biosynthesis regulatory protein AlgR) identified by sequence similarity; InterPro: Response regulator receiver domain Pfam N-terminus: response_rec, Response regulator receiver domain Pfam C-terminus: LytTr; LytTr DNA-binding domain; High confidence in function and specificity; alginate biosynthesis regulator 2651594 algR 4213605 algR Alcanivorax borkumensis SK2 alginate biosynthesis regulator YP_694043.1 2650854 R 393595 CDS YP_694044.1 110835185 4213395 complement(2651608..2652642) 1 NC_008260.1 (two-component system sensor protein, alginate biosynthesis) identified by Glimmer2; High confidence in function and specificity; two-component system sensor protein, alginate biosynthesis 2652642 algZ 4213395 algZ Alcanivorax borkumensis SK2 two-component system sensor protein, alginate biosynthesis YP_694044.1 2651608 R 393595 CDS YP_694045.1 110835186 4213482 2652773..2654167 1 NC_008260.1 catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 2654167 argH 4213482 argH Alcanivorax borkumensis SK2 argininosuccinate lyase YP_694045.1 2652773 D 393595 CDS YP_694046.1 110835187 4212168 complement(2654236..2654637) 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; nucleoside diphosphate kinase regulator 2654637 rnk 4212168 rnk Alcanivorax borkumensis SK2 nucleoside diphosphate kinase regulator YP_694046.1 2654236 R 393595 CDS YP_694047.1 110835188 4213690 2654884..2655066 1 NC_008260.1 Similar to outer membrane lipoprotein,YifL (STY3613); hypothetical protein 2655066 4213690 ABO_2327 Alcanivorax borkumensis SK2 hypothetical protein YP_694047.1 2654884 D 393595 CDS YP_694048.1 110835189 4211470 2655069..2656310 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF00278; High confidence in function and specificity; diaminopimelate decarboxylase 2656310 lysA 4211470 lysA Alcanivorax borkumensis SK2 diaminopimelate decarboxylase YP_694048.1 2655069 D 393595 CDS YP_694049.1 110835190 4211430 complement(2656382..2657857) 1 NC_008260.1 (rhs-related protein) identified by sequencesimilarity; InterPro: Na+/H+ antiporter NhaC; High confidence in function and specificity; Na+/H+ antiporter 2657857 nhaC 4211430 nhaC Alcanivorax borkumensis SK2 Na+/H+ antiporter YP_694049.1 2656382 R 393595 CDS YP_694050.1 110835191 4213691 complement(2657940..2658425) 1 NC_008260.1 (diamine acetyltransferase) (Spermidine/spermine N(1)-acetyltransferase) (SSAT) (Putrescine acetyltransferase) (Pfam: GNAT family) identified by match to TIGR protein family HMMTIGR01575 InterPro: GCN5-related N-acetyltransferase; High confidence in function and specificity; diamine N-acetyltransferase 2658425 4213691 ABO_2330 Alcanivorax borkumensis SK2 diamine N-acetyltransferase YP_694050.1 2657940 R 393595 CDS YP_694051.1 110835192 4213692 complement(2658422..2659270) 1 NC_008260.1 (conserved hypothetical protein, presumably involved in catabolism of external DNA) identified by sequence similarity; Family membership; hypothetical protein 2659270 4213692 ABO_2331 Alcanivorax borkumensis SK2 hypothetical protein YP_694051.1 2658422 R 393595 CDS YP_694052.1 110835193 4213290 2659467..2660312 1 NC_008260.1 identified by sequence similarity; identified by match to TIGRFAM protein family HMMTIGR00652 InterPro: Diaminopimelate epimerase; High confidence in function and specificity; diaminopimelate epimerase 2660312 dapF 4213290 dapF Alcanivorax borkumensis SK2 diaminopimelate epimerase YP_694052.1 2659467 D 393595 CDS YP_694053.1 110835194 4213693 2660379..2661104 1 NC_008260.1 identified by sequence similarity; hypothetical protein 2661104 4213693 ABO_2333 Alcanivorax borkumensis SK2 hypothetical protein YP_694053.1 2660379 D 393595 CDS YP_694054.1 110835195 4211777 2661121..2662044 1 NC_008260.1 identified by sequence similarity; InterPro: Phage integrase; High confidence in function and specificity; integrase/recombinase XerC 2662044 xerC 4211777 xerC Alcanivorax borkumensis SK2 integrase/recombinase XerC YP_694054.1 2661121 D 393595 CDS YP_694055.1 110835196 4213694 2662132..2662839 1 NC_008260.1 (hydrolase, haloacid dehalogenase-like family, ) identified by match to TIGR protein family HMMTIGR01668 InterPro: Haloacid dehalogenase/epoxide hydrolase family; Family membership; hydrolase 2662839 4213694 ABO_2335 Alcanivorax borkumensis SK2 hydrolase YP_694055.1 2662132 D 393595 CDS YP_694056.1 110835197 4213695 2662854..2663168 1 NC_008260.1 identified by match to PFAM protein family HMMPF04287; hypothetical protein 2663168 4213695 ABO_2336 Alcanivorax borkumensis SK2 hypothetical protein YP_694056.1 2662854 D 393595 CDS YP_694057.1 110835198 4213696 complement(2663464..2664447) 1 NC_008260.1 conserved hypothetical protein, distantly related to probable hemin degrading/transport factor Q56990; hypothetical protein 2664447 4213696 ABO_2337 Alcanivorax borkumensis SK2 hypothetical protein YP_694057.1 2663464 R 393595 CDS YP_694058.1 110835199 4213697 complement(2664847..2665059) 1 NC_008260.1 (Hemin uptake protein, COG4256, ); Family membership; hemin uptake protein 2665059 4213697 ABO_2338 Alcanivorax borkumensis SK2 hemin uptake protein YP_694058.1 2664847 R 393595 CDS YP_694059.1 110835200 4213698 2665128..2665283 1 NC_008260.1 hypothetical protein, contains domain; hypothetical protein 2665283 4213698 ABO_2339 Alcanivorax borkumensis SK2 hypothetical protein YP_694059.1 2665128 D 393595 CDS YP_694060.1 110835201 4213699 2665280..2665798 1 NC_008260.1 identified by match to PFAM protein family HMMPF00126; hypothetical protein 2665798 4213699 ABO_2340 Alcanivorax borkumensis SK2 hypothetical protein YP_694060.1 2665280 D 393595 CDS YP_694061.1 110835202 4213700 2665878..2666570 1 NC_008260.1 identified by sequence similarity.; hypothetical protein 2666570 4213700 ABO_2341 Alcanivorax borkumensis SK2 hypothetical protein YP_694061.1 2665878 D 393595 CDS YP_694062.1 110835203 4213701 2666724..2667131 1 NC_008260.1 identified by sequencesimilarity; Family membership; redox protein 2667131 4213701 ABO_2342 Alcanivorax borkumensis SK2 redox protein YP_694062.1 2666724 D 393595 CDS YP_694063.1 110835204 4212484 complement(2667373..2667888) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00186; High confidence in function and specificity; dihydrofolate reductase 2667888 folA 4212484 folA Alcanivorax borkumensis SK2 dihydrofolate reductase YP_694063.1 2667373 R 393595 CDS YP_694064.1 110835205 4211942 complement(2667965..2668798) 1 NC_008260.1 (thymidylate synthase; dTMP synthase) identified by sequence similarity; InterPro: Thymidylate synthase; High confidence in function and specificity; thymidylate synthase 2668798 thyA 4211942 thyA Alcanivorax borkumensis SK2 thymidylate synthase YP_694064.1 2667965 R 393595 CDS YP_694065.1 110835206 4211545 complement(2668795..2669592) 1 NC_008260.1 (umpA) identified by match to TIGR protein family HMMTIGR00544 InterPro: Prolipoprotein diacylglyceryl transferase; High confidence in function and specificity; prolipoprotein diacylglyceryl transferase 2669592 lgt 4211545 lgt Alcanivorax borkumensis SK2 prolipoprotein diacylglyceryl transferase YP_694065.1 2668795 R 393595 CDS YP_694066.1 110835207 4213702 complement(2669599..2670408) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Domain of unknown function DUF81; hypothetical protein 2670408 4213702 ABO_2346 Alcanivorax borkumensis SK2 hypothetical protein YP_694066.1 2669599 R 393595 CDS YP_694067.1 110835208 4213703 2670568..2671341 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 2671341 4213703 ABO_2347 Alcanivorax borkumensis SK2 hypothetical protein YP_694067.1 2670568 D 393595 CDS YP_694068.1 110835209 4211236 complement(2671524..2673797) 1 NC_008260.1 (phosphoenolpyruvate-protein phosphotransferasePtsP) identified by sequencesimilarity; InterPro: PEP-utilizing enzyme; High confidence in function and specificity; phosphoenolpyruvate-protein phosphotransferase 2673797 ptsP 4211236 ptsP Alcanivorax borkumensis SK2 phosphoenolpyruvate-protein phosphotransferase YP_694068.1 2671524 R 393595 CDS YP_694069.1 110835210 4211677 complement(2673790..2674332) 1 NC_008260.1 (di)nucleoside polyphosphate hydrolase ) identified by sequencesimilarity; InterPro: NUDIX hydrolase; Specificity unclear; (di)nucleoside polyphosphate hydrolase 2674332 nudH 4211677 nudH Alcanivorax borkumensis SK2 (di)nucleoside polyphosphate hydrolase YP_694069.1 2673790 R 393595 CDS YP_694070.1 110835211 4213704 2674524..2675177 1 NC_008260.1 hypothetical protein 2675177 4213704 ABO_2350 Alcanivorax borkumensis SK2 hypothetical protein YP_694070.1 2674524 D 393595 CDS YP_694071.1 110835212 4213705 2675184..2676161 1 NC_008260.1 (universal stress protein family) identified by match to PFAM protein family HMMPF00582; hypothetical protein 2676161 4213705 ABO_2351 Alcanivorax borkumensis SK2 hypothetical protein YP_694071.1 2675184 D 393595 CDS YP_694072.1 110835213 4213706 complement(2676423..2677022) 1 NC_008260.1 hypothetical protein 2677022 4213706 ABO_2352 Alcanivorax borkumensis SK2 hypothetical protein YP_694072.1 2676423 R 393595 CDS YP_694073.1 110835214 4212349 2677251..2679761 1 NC_008260.1 Copper-transporting P-type ATPase (EC 3.6.3.4).; High confidence in function and specificity; Cu(I)-exporting ATPase 2679761 copA 4212349 copA Alcanivorax borkumensis SK2 Cu(I)-exporting ATPase YP_694073.1 2677251 D 393595 CDS YP_694074.1 110835215 4212397 2679758..2680411 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2680411 4212397 ABO_2354 Alcanivorax borkumensis SK2 hypothetical protein YP_694074.1 2679758 D 393595 CDS YP_694075.1 110835216 4212398 2680408..2680767 1 NC_008260.1 hypothetical protein 2680767 4212398 ABO_2355 Alcanivorax borkumensis SK2 hypothetical protein YP_694075.1 2680408 D 393595 CDS YP_694076.1 110835217 4212399 2680818..2681312 1 NC_008260.1 predicted metal-binding protein (conserved hypothetical protein) identified by match to PFAM protein family HMMPF04214; metal-binding protein 2681312 4212399 ABO_2356 Alcanivorax borkumensis SK2 metal-binding protein YP_694076.1 2680818 D 393595 CDS YP_694077.1 110835218 4212400 2681462..2682124 1 NC_008260.1 identified by match to PFAM protein family HMMPF01810; InterPro: Lysine exporter protein (LYSE/YGGA); Family membership; amino acid transporter LysE 2682124 4212400 ABO_2357 Alcanivorax borkumensis SK2 amino acid transporter LysE YP_694077.1 2681462 D 393595 CDS YP_694078.1 110835219 4212401 2682121..2682504 1 NC_008260.1 hypothetical protein 2682504 4212401 ABO_2358 Alcanivorax borkumensis SK2 hypothetical protein YP_694078.1 2682121 D 393595 CDS YP_694079.1 110835220 4212446 2682540..2684462 1 NC_008260.1 (copper resistance protein A) identified by sequencesimilarity; InterPro: Multicopper oxidase type 1; High confidence in function and specificity; copper resistance protein A 2684462 pcoA 4212446 pcoA Alcanivorax borkumensis SK2 copper resistance protein A YP_694079.1 2682540 D 393595 CDS YP_694080.1 110835221 4212447 2684459..2685193 1 NC_008260.1 (copB) (copper resistance protein B); High confidence in function and specificity; copper resistance protein B 2685193 pcoB 4212447 pcoB Alcanivorax borkumensis SK2 copper resistance protein B YP_694080.1 2684459 D 393595 CDS YP_694081.1 110835222 4211782 complement(2685385..2686029) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00484 InterPro: Prokaryotic-type carbonic anhydrase; High confidence in function and specificity; carbonic anhydrase 2686029 yadF 4211782 yadF Alcanivorax borkumensis SK2 carbonic anhydrase YP_694081.1 2685385 R 393595 CDS YP_694082.1 110835223 4211599 complement(2686086..2687099) 1 NC_008260.1 identified by sequencesimilarity; InterPro: MoaA / nifB / pqqE family; Family membership; molybdenum cofactor biosynthesis protein A 2687099 moaA 4211599 moaA Alcanivorax borkumensis SK2 molybdenum cofactor biosynthesis protein A YP_694082.1 2686086 R 393595 CDS YP_694083.1 110835224 4213635 2687303..2687791 1 NC_008260.1 identified by sequence similarity; InterPro: FKBP-type peptidyl-prolyl cis-trans isomerase (PPIase); High confidence in function and specificity; FKBP-type peptidylprolyl isomerase 2687791 slyD 4213635 slyD Alcanivorax borkumensis SK2 FKBP-type peptidylprolyl isomerase YP_694083.1 2687303 D 393595 CDS YP_694084.1 110835225 4211246 2687933..2688724 1 NC_008260.1 identified by match to PFAM protein family HMMPF01177 InterPro: Glutamate racemase provides the (r)-glutamic acid required for cell wall biosynthesis (by similarity).; High confidence in function and specificity; glutamate racemase 2688724 murI 4211246 murI Alcanivorax borkumensis SK2 glutamate racemase YP_694084.1 2687933 D 393595 CDS YP_694085.1 110835226 4212341 complement(2688822..2690267) 1 NC_008260.1 catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase 2690267 cobQ 4212341 cobQ Alcanivorax borkumensis SK2 cobyric acid synthase YP_694085.1 2688822 R 393595 CDS YP_694086.1 110835227 4212340 complement(2690389..2691000) 1 NC_008260.1 (cob(I)yrinic acid a,c-diamide adenosyltransferase; ATP:corrinoid adenosyltransferase;) identified by sequencesimilarity; InterPro: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; High confidence in function and specificity; cob(I)yrinic acid a,c-diamide adenosyltransferase 2691000 cobO 4212340 cobO Alcanivorax borkumensis SK2 cob(I)yrinic acid a,c-diamide adenosyltransferase YP_694086.1 2690389 R 393595 CDS YP_694087.1 110835228 4212402 complement(2690993..2692369) 1 NC_008260.1 Acid--ammonia (or amine) ligases (amide synthases) identified by sequencesimilarity; InterPro: Cobyrinic acid ac-diamide synthase; Specificity unclear; acid--ammonia (or amine) ligase-like protein 2692369 4212402 ABO_2367 Alcanivorax borkumensis SK2 acid--ammonia (or amine) ligase-like protein YP_694087.1 2690993 R 393595 CDS YP_694088.1 110835229 4212403 complement(2692414..2693178) 1 NC_008260.1 Family membership; ABC transporter ATP-binding protein 2693178 4212403 ABO_2368 Alcanivorax borkumensis SK2 ABC transporter ATP-binding protein YP_694088.1 2692414 R 393595 CDS YP_694089.1 110835230 4212404 complement(2693231..2694247) 1 NC_008260.1 Family membership; Fe3+-siderophore ABC transporter permease 2694247 4212404 ABO_2369 Alcanivorax borkumensis SK2 Fe3+-siderophore ABC transporter permease YP_694089.1 2693231 R 393595 CDS YP_694090.1 110835231 4212405 complement(2694198..2695079) 1 NC_008260.1 identified by sequence similarity; InterPro: Periplasmic binding protein; Family membership; Fe3+-hydroxamate ABC transporter periplasmic binding protein 2695079 4212405 ABO_2370 Alcanivorax borkumensis SK2 Fe3+-hydroxamate ABC transporter periplasmic binding protein YP_694090.1 2694198 R 393595 CDS YP_694091.1 110835232 4212406 complement(2695118..2696968) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00593 InterPro: TonB-dependent receptor protein; Family membership; TonB-dependent receptor protein 2696968 4212406 ABO_2371 Alcanivorax borkumensis SK2 TonB-dependent receptor protein YP_694091.1 2695118 R 393595 CDS YP_694092.1 110835233 4212407 complement(2697214..2697321) 1 NC_008260.1 hypothetical protein 2697321 4212407 ABO_2372 Alcanivorax borkumensis SK2 hypothetical protein YP_694092.1 2697214 R 393595 CDS YP_694093.1 110835234 4212408 2697526..2698446 1 NC_008260.1 hypothetical protein 2698446 4212408 ABO_2373 Alcanivorax borkumensis SK2 hypothetical protein YP_694093.1 2697526 D 393595 CDS YP_694094.1 110835235 4212975 2698443..2699651 1 NC_008260.1 (Cytochrome c551 peroxidase precursor (EC 1.11.1.5)) (Cytochrome c peroxidase); InterPro IPR000345; CytC_heme_BS. IPR004852; CytCP_MauG.; High confidence in function and specificity; cytochrome-c peroxidase 2699651 ccpR 4212975 ccpR Alcanivorax borkumensis SK2 cytochrome-c peroxidase YP_694094.1 2698443 D 393595 CDS YP_694095.1 110835236 4212409 2699648..2700895 1 NC_008260.1 hypothetical protein 2700895 4212409 ABO_2375 Alcanivorax borkumensis SK2 hypothetical protein YP_694095.1 2699648 D 393595 CDS YP_694096.1 110835237 4212472 complement(2700892..2701881) 1 NC_008260.1 identified by sequence similarity; High confidence in function and specificity; cobalamin biosynthesis protein CobC 2701881 cobC 4212472 cobC Alcanivorax borkumensis SK2 cobalamin biosynthesis protein CobC YP_694096.1 2700892 R 393595 CDS YP_694097.1 110835238 4212473 complement(2701878..2702807) 1 NC_008260.1 CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein 2702807 cobD 4212473 cobD Alcanivorax borkumensis SK2 cobalamin biosynthesis protein YP_694097.1 2701878 R 393595 CDS YP_694098.1 110835239 4212343 2702834..2703973 1 NC_008260.1 identified by sequencesimilarity; InterPro: Phosphoribosyltransferase family (DBI_PRT); High confidence in function and specificity; nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase 2703973 cobT 4212343 cobT Alcanivorax borkumensis SK2 nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase YP_694098.1 2702834 D 393595 CDS YP_694099.1 110835240 4212410 2704030..2704626 1 NC_008260.1 (alpha-ribazole-5-phosphate phosphatase, ) identified by sequence similarity; InterPro: Phosphoglycerate mutase family; Family membership; alpha-ribazole-5'-phosphate phosphatase 2704626 4212410 ABO_2379 Alcanivorax borkumensis SK2 alpha-ribazole-5'-phosphate phosphatase YP_694099.1 2704030 D 393595 CDS YP_694100.1 110835241 4212344 complement(2704763..2705284) 1 NC_008260.1 bifunctional cobalamin biosynthesis protein cobu [includes: cobinamide kinase; cobinamide phosphate guanylyltransferase].; High confidence in function and specificity; hypothetical protein 2705284 cobU 4212344 cobU Alcanivorax borkumensis SK2 hypothetical protein YP_694100.1 2704763 R 393595 CDS YP_694101.1 110835242 4211605 complement(2705284..2705862) 1 NC_008260.1 identified by sequence similarity; IPR004624) Phosphonoacetate hydrolase PhnA is a novel carbon-phosphorus bond cleavage enzyme. The phnA gene is part of a large operon in Escherichia coli associated with alkylphosphonate uptake and carbon-phosphorus bond cleavage. PhnA is found in both gram positive and gram negative bacteria. Alignment; High confidence in function and specificity; phnA protein 2705862 phnA 4211605 phnA Alcanivorax borkumensis SK2 phnA protein YP_694101.1 2705284 R 393595 CDS YP_694102.1 110835243 4211362 complement(2705996..2707237) 1 NC_008260.1 identified by sequence similarity; InterPro: Molybdenum cofactor biosynthesis protein; High confidence in function and specificity; molybdopterin biosynthesis MoeA protein 2707237 moeA 4211362 moeA Alcanivorax borkumensis SK2 molybdopterin biosynthesis MoeA protein YP_694102.1 2705996 R 393595 CDS YP_694103.1 110835244 4211600 complement(2707276..2707788) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Molybdenum cofactor biosynthesis protein; High confidence in function and specificity; molybdenum cofactor biosynthesis protein B 2707788 moaB-1 4211600 moaB-1 Alcanivorax borkumensis SK2 molybdenum cofactor biosynthesis protein B YP_694103.1 2707276 R 393595 CDS YP_694104.1 110835245 4211637 2707944..2709311 1 NC_008260.1 (cytochrome P450, ) identified by sequencesimilarity; InterPro: Cytochrome P450 enzyme; High confidence in function and specificity; cytochrome P450 2709311 p450 4211637 p450 Alcanivorax borkumensis SK2 cytochrome P450 YP_694104.1 2707944 D 393595 CDS YP_694105.1 110835246 4212411 complement(2709418..2710260) 1 NC_008260.1 (conserved hypothetical protein; Mechanosensitive ion channel) identified by match to PFAM protein family HMMPF00924 Pfam: MS_channel; hypothetical protein 2710260 4212411 ABO_2385 Alcanivorax borkumensis SK2 hypothetical protein YP_694105.1 2709418 R 393595 CDS YP_694106.1 110835247 4212412 2710437..2711078 1 NC_008260.1 identified by match to PFAM protein family HMMPF00753 InterPro: Metallo-beta-lactamase superfamily; Family membership; metallo-beta-lactamase family protein 2711078 4212412 ABO_2386 Alcanivorax borkumensis SK2 metallo-beta-lactamase family protein YP_694106.1 2710437 D 393595 CDS YP_694107.1 110835248 4212413 2711081..2711614 1 NC_008260.1 identified by match to PFAM protein family HMMPF03596; hypothetical protein 2711614 4212413 ABO_2387 Alcanivorax borkumensis SK2 hypothetical protein YP_694107.1 2711081 D 393595 CDS YP_694108.1 110835249 4212414 2711825..2712163 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 2712163 4212414 ABO_2388 Alcanivorax borkumensis SK2 hypothetical protein YP_694108.1 2711825 D 393595 CDS YP_694109.1 110835250 4212415 2712247..2712933 1 NC_008260.1 hypothetical protein 2712933 4212415 ABO_2389 Alcanivorax borkumensis SK2 hypothetical protein YP_694109.1 2712247 D 393595 CDS YP_694110.1 110835251 4212086 complement(2713028..2713447) 1 NC_008260.1 (conserved hypothetical protein, non-secretory ) TIGR00149; Pfam: UPF0047 Uncharacterised protein family UPF004; hypothetical protein 2713447 4212086 ABO_2390 Alcanivorax borkumensis SK2 hypothetical protein YP_694110.1 2713028 R 393595 CDS YP_694111.1 110835252 4211482 complement(2713661..2714614) 1 NC_008260.1 identified by sequencesimilarity; High confidence in function and specificity; glycerate dehydrogenase 2714614 hprA 4211482 hprA Alcanivorax borkumensis SK2 glycerate dehydrogenase YP_694111.1 2713661 R 393595 CDS YP_694112.1 110835253 4212087 2714650..2715318 1 NC_008260.1 identified by Glimmer2; Pfam: DUF523, Protein of unknown function (DUF523); hypothetical protein 2715318 4212087 ABO_2392 Alcanivorax borkumensis SK2 hypothetical protein YP_694112.1 2714650 D 393595 CDS YP_694113.1 110835254 4212088 complement(2715498..2717027) 1 NC_008260.1 identified by sequence similarity; InterPro: Flavin-containing monooxygenase (FMO); Family membership; monooxygenase flavin-binding family protein 2717027 4212088 ABO_2393 Alcanivorax borkumensis SK2 monooxygenase flavin-binding family protein YP_694113.1 2715498 R 393595 CDS YP_694114.1 110835255 4213351 complement(2717029..2717877) 1 NC_008260.1 (oxidoreductase, short chain dehydrogenase/reductase family) identified by match to TIGR protein family HMMTIGR01500 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily Pfam adh_short, short chain dehydrogenase; Family membership; short chain dehydrogenase/reductase family oxidoreductase 2717877 ephD 4213351 ephD Alcanivorax borkumensis SK2 short chain dehydrogenase/reductase family oxidoreductase YP_694114.1 2717029 R 393595 CDS YP_694115.1 110835257 4212089 complement(2718342..2718797) 1 NC_008260.1 hypothetical protein 2718797 4212089 ABO_2395 Alcanivorax borkumensis SK2 hypothetical protein YP_694115.1 2718342 R 393595 CDS YP_694116.1 110835256 4212090 2718791..2719111 1 NC_008260.1 (hypothetical protein); hypothetical protein 2719111 4212090 ABO_2396 Alcanivorax borkumensis SK2 hypothetical protein YP_694116.1 2718791 D 393595 CDS YP_694117.1 110835258 4212091 complement(2718797..2719141) 1 NC_008260.1 identified by sequence similarity; InterPro: Rieske iron-sulfur protein 2Fe-2S subunit belongs to the bacterial ring-hydroxylating dioxygenase ferredoxin component family.; Family membership; dioxygenase ferredoxin reductase component 2719141 4212091 ABO_2397 Alcanivorax borkumensis SK2 dioxygenase ferredoxin reductase component YP_694117.1 2718797 R 393595 CDS YP_694118.1 110835259 4213641 complement(2719194..2721074) 1 NC_008260.1 catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 2721074 speA 4213641 speA Alcanivorax borkumensis SK2 arginine decarboxylase YP_694118.1 2719194 R 393595 CDS YP_694119.1 110835260 4213643 2721265..2722125 1 NC_008260.1 catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase 2722125 speE 4213643 speE Alcanivorax borkumensis SK2 spermidine synthase YP_694119.1 2721265 D 393595 CDS YP_694120.1 110835261 4212092 complement(2722213..2723097) 1 NC_008260.1 hypothetical protein 2723097 4212092 ABO_2400 Alcanivorax borkumensis SK2 hypothetical protein YP_694120.1 2722213 R 393595 CDS YP_694121.1 110835262 4211417 complement(2723428..2723652) 1 NC_008260.1 C-terminal fragment of 2-hydroxychromene carboxylate isomerase, identified by sequencesimilarity; High confidence in function and specificity; 2-hydroxychromene carboxylate isomerase 2723652 nahD 4211417 nahD Alcanivorax borkumensis SK2 2-hydroxychromene carboxylate isomerase YP_694121.1 2723428 R 393595 CDS YP_694122.1 110835263 4212093 complement(2723658..2724590) 1 NC_008260.1 identified by match to PFAM protein family HMMPF03466 InterPro: Bacterial regulatory protein LysR family; Family membership; LysR family transcriptional regulator 2724590 4212093 ABO_2402 Alcanivorax borkumensis SK2 LysR family transcriptional regulator YP_694122.1 2723658 R 393595 CDS YP_694123.1 110835264 4212777 2724875..2725552 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00249; InterPro: Phosphoglycerate mutase family; Family membership; phosphoglycerate mutase 2725552 gpmA 4212777 gpmA Alcanivorax borkumensis SK2 phosphoglycerate mutase YP_694123.1 2724875 D 393595 CDS YP_694124.1 110835265 4212094 2725687..2726439 1 NC_008260.1 identified by match to PFAM protein family HMMPF00106 InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; Family membership; short chain dehydrogenase 2726439 4212094 ABO_2404 Alcanivorax borkumensis SK2 short chain dehydrogenase YP_694124.1 2725687 D 393595 CDS YP_694125.1 110835266 4212095 complement(2726567..2727460) 1 NC_008260.1 identified by sequence similarity; InterPro: mce related protein; Conserved hypothetical protein; PqiB family protein 2727460 4212095 ABO_2405 Alcanivorax borkumensis SK2 PqiB family protein YP_694125.1 2726567 R 393595 CDS YP_694126.1 110835267 4212096 complement(2727402..2727917) 1 NC_008260.1 Function unclear; paraquat-inducible protein 2727917 4212096 ABO_2406 Alcanivorax borkumensis SK2 paraquat-inducible protein YP_694126.1 2727402 R 393595 CDS YP_694127.1 110835268 4212097 complement(2727907..2728557) 1 NC_008260.1 hypothetical protein 2728557 4212097 ABO_2407 Alcanivorax borkumensis SK2 hypothetical protein YP_694127.1 2727907 R 393595 CDS YP_694128.1 110835269 4212098 complement(2728791..2730143) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00271 InterPro: DEAD/DEAH box helicase; Family membership; DEAD/DEAH box helicase 2730143 4212098 ABO_2408 Alcanivorax borkumensis SK2 DEAD/DEAH box helicase YP_694128.1 2728791 R 393595 CDS YP_694129.1 110835270 4212099 complement(2730340..2730555) 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 2730555 4212099 ABO_2409 Alcanivorax borkumensis SK2 hypothetical protein YP_694129.1 2730340 R 393595 CDS YP_694130.1 110835272 4212100 complement(2730552..2731295) 1 NC_008260.1 conserved hypothetical protein, contains Esterase/lipase/thioesterase family active site (InterPro); hypothetical protein 2731295 4212100 ABO_2410 Alcanivorax borkumensis SK2 hypothetical protein YP_694130.1 2730552 R 393595 CDS YP_694131.1 110835271 4212101 2731234..2731353 1 NC_008260.1 truncated gene for fucokinase / gluconokinase / glycerokinase / xylulokinase family, key enzyme in the regulation of glycerol uptake and metabolism.; Function unclear; gene fragment for glycerol kinase 2731353 4212101 ABO_2411 Alcanivorax borkumensis SK2 gene fragment for glycerol kinase YP_694131.1 2731234 D 393595 CDS YP_694132.1 110835273 4212102 2731487..2732053 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 2732053 4212102 ABO_2412 Alcanivorax borkumensis SK2 hypothetical protein YP_694132.1 2731487 D 393595 CDS YP_694133.1 110835274 4211653 complement(2732145..2733050) 1 NC_008260.1 Required for efficient pilin antigenic variation; recombination associated protein 2733050 rdgC 4211653 rdgC Alcanivorax borkumensis SK2 recombination associated protein YP_694133.1 2732145 R 393595 CDS YP_694134.1 110835275 4211292 2733269..2734222 1 NC_008260.1 (oxidoreductase aldo/keto reductase family) identified by match to TIGR protein family HMMTIGR01293 InterPro: Aldo/keto reductase family; Family membership; aldehyde reductase 2734222 AKR1A1 4211292 AKR1A1 Alcanivorax borkumensis SK2 aldehyde reductase YP_694134.1 2733269 D 393595 CDS YP_694135.1 110835276 4212218 2734484..2735374 1 NC_008260.1 haloallkane dehalogenase; belongs to the haloalkane dehalogenase family. subfamily 1.; High confidence in function and specificity; haloalkane dehalogenase 2735374 dhmA 4212218 dhmA Alcanivorax borkumensis SK2 haloalkane dehalogenase YP_694135.1 2734484 D 393595 CDS YP_694136.1 110835277 4212103 complement(2735501..2735728) 1 NC_008260.1 hypothetical protein 2735728 4212103 ABO_2416 Alcanivorax borkumensis SK2 hypothetical protein YP_694136.1 2735501 R 393595 CDS YP_694137.1 110835278 4212104 complement(2735737..2736657) 1 NC_008260.1 identified by sequence similarity; hypothetical protein 2736657 4212104 ABO_2417 Alcanivorax borkumensis SK2 hypothetical protein YP_694137.1 2735737 R 393595 CDS YP_694138.1 110835279 4212105 2736857..2737465 1 NC_008260.1 (transcriptional regulator, ) identified by match to PFAM protein family HMMPF00440 InterPro: Bacterial regulatory proteins TetR family HTH reporting nucleic acid binding motif; Family membership; TetR family transcriptional regulator 2737465 4212105 ABO_2418 Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_694138.1 2736857 D 393595 CDS YP_694139.1 110835280 4213080 2737574..2738731 1 NC_008260.1 InterPro: Iron-containing alcohol dehydrogenase; Specificity unclear; NADH-dependent alcohol dehydrogenase 2738731 4213080 ABO_2419 Alcanivorax borkumensis SK2 NADH-dependent alcohol dehydrogenase YP_694139.1 2737574 D 393595 CDS YP_694140.1 110835281 4213081 2738811..2739500 1 NC_008260.1 identified by sequencesimilarity; InterPro: ThiJ/PfpI family; Family membership; ThiJ/PfpI family protein 2739500 4213081 ABO_2420 Alcanivorax borkumensis SK2 ThiJ/PfpI family protein YP_694140.1 2738811 D 393595 CDS YP_694141.1 110835282 4212461 complement(2739644..2740645) 1 NC_008260.1 (ubiquinol oxidase subunit II cyanideinsensitive) identified by sequence similarity; InterPro: Cytochrome bd ubiquinol oxidase subunit II catalytic activity: ubiquinol-8 + o(2) = ubiquinone-8 + h(2)o; High confidence in function and specificity; cytochrome bd-I oxidase subunit II 2740645 cioB 4212461 cioB Alcanivorax borkumensis SK2 cytochrome bd-I oxidase subunit II YP_694141.1 2739644 R 393595 CDS YP_694142.1 110835283 4212460 complement(2740642..2742030) 1 NC_008260.1 (ubiquinol oxidase subunit I cyanide insensitive) identified by sequence similarity; InterPro: Cytochrome bd ubiquinol oxidase subunit I; High confidence in function and specificity; cytochrome bd-1 oxidase subunit I 2742030 cioA 4212460 cioA Alcanivorax borkumensis SK2 cytochrome bd-1 oxidase subunit I YP_694142.1 2740642 R 393595 CDS YP_694143.1 110835284 4213082 2742336..2743337 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2743337 4213082 ABO_2423 Alcanivorax borkumensis SK2 hypothetical protein YP_694143.1 2742336 D 393595 CDS YP_694144.1 110835285 4213083 2743740..2745194 1 NC_008260.1 identified by match to PFAM protein family HMMPF02696 InterPro: Uncharacterized protein family UPF0061; hypothetical protein 2745194 4213083 ABO_2424 Alcanivorax borkumensis SK2 hypothetical protein YP_694144.1 2743740 D 393595 CDS YP_694145.1 110835286 4213084 complement(2745268..2746134) 1 NC_008260.1 glutathione S-transferase family protein; Family membership; glutathione S-transferase 2746134 4213084 ABO_2425 Alcanivorax borkumensis SK2 glutathione S-transferase YP_694145.1 2745268 R 393595 CDS YP_694146.1 110835287 4213085 complement(2746229..2747185) 1 NC_008260.1 (metallo-beta-lactamase super family protein) identified by match to PFAM protein family HMMPF00753 InterPro: Metallo-beta-lactamase superfamily; Family membership; metallo-beta-lactamase family protein 2747185 4213085 ABO_2426 Alcanivorax borkumensis SK2 metallo-beta-lactamase family protein YP_694146.1 2746229 R 393595 CDS YP_694147.1 110835288 4213086 complement(2747287..2748177) 1 NC_008260.1 identified by sequence similarity; InterPro: Bacterial regulatory protein LysR family; Family membership; LysR family transcriptional regulator 2748177 4213086 ABO_2427 Alcanivorax borkumensis SK2 LysR family transcriptional regulator YP_694147.1 2747287 R 393595 CDS YP_694148.1 110835289 4213087 2748288..2748788 1 NC_008260.1 identified by match to PFAM protein family HMMPF00903 InterPro: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Conserved hypothetical protein; glyoxalase family protein 2748788 4213087 ABO_2428 Alcanivorax borkumensis SK2 glyoxalase family protein YP_694148.1 2748288 D 393595 CDS YP_694149.1 110835290 4213088 complement(2748835..2749107) 1 NC_008260.1 hypothetical protein 2749107 4213088 ABO_2429 Alcanivorax borkumensis SK2 hypothetical protein YP_694149.1 2748835 R 393595 CDS YP_694150.1 110835291 4211290 complement(2749791..2751407) 1 NC_008260.1 (alkyl hydroperoxide reductase F subunit) identified by sequence similarity; InterPro: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; High confidence in function and specificity; alkyl hydroperoxide reductase 2751407 ahpF 4211290 ahpF Alcanivorax borkumensis SK2 alkyl hydroperoxide reductase YP_694150.1 2749791 R 393595 CDS YP_694151.1 110835292 4211289 complement(2751507..2752070) 1 NC_008260.1 identified by sequence similarity; InterPro: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; High confidence in function and specificity; alkyl hydroperoxide reductase 2752070 ahpC 4211289 ahpC Alcanivorax borkumensis SK2 alkyl hydroperoxide reductase YP_694151.1 2751507 R 393595 CDS YP_694152.1 110835293 4213089 2752272..2752598 1 NC_008260.1 predicted by Glimmer/Critica.; hypothetical protein 2752598 4213089 ABO_2432 Alcanivorax borkumensis SK2 hypothetical protein YP_694152.1 2752272 D 393595 CDS YP_694153.1 110835294 4213090 complement(2752654..2755281) 1 NC_008260.1 conserved hypothetical protein, signal transduction protein containing a membrane domain, an EAL and a GGDEF domain and PAS/PAC domain; signal transduction protein 2755281 4213090 ABO_2433 Alcanivorax borkumensis SK2 signal transduction protein YP_694153.1 2752654 R 393595 CDS YP_694154.1 110835295 4211238 2755437..2756174 1 NC_008260.1 (monofunctional biosynthetic peptidoglycantransglycosylase) identified by sequence similarity; InterPro: Glycosyltransferase family 51; High confidence in function and specificity; peptidoglycantransglycosylase 2756174 mtgA 4211238 mtgA Alcanivorax borkumensis SK2 peptidoglycantransglycosylase YP_694154.1 2755437 D 393595 CDS YP_694155.1 110835296 4213091 2756171..2757619 1 NC_008260.1 hypothetical protein 2757619 4213091 ABO_2435 Alcanivorax borkumensis SK2 hypothetical protein YP_694155.1 2756171 D 393595 CDS YP_694156.1 110835297 4213092 2757667..2758356 1 NC_008260.1 (glutamine amidotransferase class I) identified by match to TIGR protein family HMMTIGR00888 InterPro: Glutamine amidotransferase class-I; Family membership; glutamine amidotransferase domain-containing protein 2758356 4213092 ABO_2436 Alcanivorax borkumensis SK2 glutamine amidotransferase domain-containing protein YP_694156.1 2757667 D 393595 CDS YP_694157.1 110835298 4211538 complement(2758502..2760181) 1 NC_008260.1 identified by sequencesimilarity; InterPro: HMG-CoA Lyase-like family; High confidence in function and specificity; 2-isopropylmalate synthase 2760181 leuA 4211538 leuA Alcanivorax borkumensis SK2 2-isopropylmalate synthase YP_694157.1 2758502 R 393595 CDS YP_694158.1 110835299 4213093 2760484..2760978 1 NC_008260.1 (transcriptional regulator, AsnC family, ) identified by match to PFAM protein family HMMPF01037 InterPro: Bacterial regulatory proteins AsnC family; Family membership; transcriptional regulator 2760978 4213093 ABO_2438 Alcanivorax borkumensis SK2 transcriptional regulator YP_694158.1 2760484 D 393595 CDS YP_694159.1 110835300 4213094 2761188..2761649 1 NC_008260.1 hypothetical protein 2761649 4213094 ABO_2439 Alcanivorax borkumensis SK2 hypothetical protein YP_694159.1 2761188 D 393595 CDS YP_694160.1 110835301 4213095 complement(2761782..2762555) 1 NC_008260.1 (enoyl-CoA hydratase/isomerase family protein, ) identified by match to PFAM protein family HMMPF00378 InterPro: Enoyl-CoA hydratase/isomerase; High confidence in function and specificity; enoyl-CoA hydratase 2762555 4213095 ABO_2440 Alcanivorax borkumensis SK2 enoyl-CoA hydratase YP_694160.1 2761782 R 393595 CDS YP_694161.1 110835302 4213096 complement(2762808..2764043) 1 NC_008260.1 predicted by Glimmer/Critica.; hypothetical protein 2764043 4213096 ABO_2441 Alcanivorax borkumensis SK2 hypothetical protein YP_694161.1 2762808 R 393595 CDS YP_694162.1 110835303 4213630 2764335..2765570 1 NC_008260.1 (phosphoserine phosphatase, o-phosphoserine phosphohydrolase) identified by sequence similarity; identified by match to TIGRFAM protein family HMMTIGR00338; InterPro: Phosphoserine phosphatase SerB; High confidence in function and specificity; phosphoserine phosphatase 2765570 serB 4213630 serB Alcanivorax borkumensis SK2 phosphoserine phosphatase YP_694162.1 2764335 D 393595 CDS YP_694163.1 110835304 4213097 complement(2765710..2767797) 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 2767797 4213097 ABO_2443 Alcanivorax borkumensis SK2 hypothetical protein YP_694163.1 2765710 R 393595 CDS YP_694164.1 110835305 4213098 complement(2768054..2769811) 1 NC_008260.1 hypothetical protein 2769811 4213098 ABO_2444 Alcanivorax borkumensis SK2 hypothetical protein YP_694164.1 2768054 R 393595 CDS YP_694165.1 110835306 4213746 complement(2769978..2771069) 1 NC_008260.1 hypothetical protein 2771069 4213746 ABO_2445 Alcanivorax borkumensis SK2 hypothetical protein YP_694165.1 2769978 R 393595 CDS YP_694166.1 110835307 4213344 2771299..2771868 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00038 InterPro: Elongation factor P (EF-P); High confidence in function and specificity; translation elongation factor P 2771868 efp 4213344 efp Alcanivorax borkumensis SK2 translation elongation factor P YP_694166.1 2771299 D 393595 CDS YP_694167.1 110835308 4211472 2771871..2772806 1 NC_008260.1 identified by sequencesimilarity; InterPro: tRNA synthetases class II (D K and N); High confidence in function and specificity; lysyl-tRNA synthetase 2772806 lysRS 4211472 lysRS Alcanivorax borkumensis SK2 lysyl-tRNA synthetase YP_694167.1 2771871 D 393595 CDS YP_694168.1 110835309 4213747 2772884..2773270 1 NC_008260.1 predicted by Glimmer/Critica.; hypothetical protein 2773270 4213747 ABO_2448 Alcanivorax borkumensis SK2 hypothetical protein YP_694168.1 2772884 D 393595 CDS YP_694169.1 110835310 4213748 complement(2773448..2774365) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01738 InterPro: Alpha/beta hydrolase fold; Family membership; alpha/beta hydrolase 2774365 4213748 ABO_2449 Alcanivorax borkumensis SK2 alpha/beta hydrolase YP_694169.1 2773448 R 393595 CDS YP_694170.1 110835312 4213749 complement(2774505..2775125) 1 NC_008260.1 identified by sequencesimilarity. InterPro: Bacterial regulatory proteins TetR family; Family membership; TetR family transcriptional regulator 2775125 4213749 ABO_2450 Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_694170.1 2774505 R 393595 CDS YP_694171.1 110835311 4213750 2774547..2774687 1 NC_008260.1 predicted by Glimmer/Critica.; hypothetical protein 2774687 4213750 ABO_2451 Alcanivorax borkumensis SK2 hypothetical protein YP_694171.1 2774547 D 393595 CDS YP_694172.1 110835313 4211857 2775330..2776631 1 NC_008260.1 FadI; fatty acid oxidation complex component beta; functions in a heterotetramer with FadJ; similar to FadA2B2 complex; functions in beta-oxidation of fatty acids during anaerobic growth; 3-ketoacyl-CoA thiolase 2776631 fadI 4211857 fadI Alcanivorax borkumensis SK2 3-ketoacyl-CoA thiolase YP_694172.1 2775330 D 393595 CDS YP_694173.1 110835314 4213751 2776687..2778981 1 NC_008260.1 functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase 2778981 fadE 4213751 fadE Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_694173.1 2776687 D 393595 CDS YP_694174.1 110835315 4213752 2779097..2779987 1 NC_008260.1 (lipase/esterase family protein) identified by sequence similarity; InterPro: Esterase/lipase/thioesterase/carboxlesterase family active site; High confidence in function and specificity; lipase/esterase 2779987 4213752 ABO_2454 Alcanivorax borkumensis SK2 lipase/esterase YP_694174.1 2779097 D 393595 CDS YP_694175.1 110835316 4213753 2780130..2781353 1 NC_008260.1 (InterPro: contains Esterase/lipase/thioesterase family active site, PS50187); hypothetical protein 2781353 4213753 ABO_2455 Alcanivorax borkumensis SK2 hypothetical protein YP_694175.1 2780130 D 393595 CDS YP_694176.1 110835317 4213754 complement(2781449..2782084) 1 NC_008260.1 identified by sequence similarity; hypothetical protein 2782084 4213754 ABO_2456 Alcanivorax borkumensis SK2 hypothetical protein YP_694176.1 2781449 R 393595 CDS YP_694177.1 110835318 4212780 complement(2782159..2782674) 1 NC_008260.1 identified by sequence similarity; InterPro: Prokaryotic transcription elongation factor GreA/GreB; High confidence in function and specificity; transcription elongation factor GreB 2782674 greB 4212780 greB Alcanivorax borkumensis SK2 transcription elongation factor GreB YP_694177.1 2782159 R 393595 CDS YP_694178.1 110835319 4213755 complement(2782678..2783100) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily; Family membership; ring-cleaving dioxygenase 2783100 4213755 ABO_2458 Alcanivorax borkumensis SK2 ring-cleaving dioxygenase YP_694178.1 2782678 R 393595 CDS YP_694179.1 110835320 4212666 2783307..2784317 1 NC_008260.1 catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase 2784317 hemB 4212666 hemB Alcanivorax borkumensis SK2 delta-aminolevulinic acid dehydratase YP_694179.1 2783307 D 393595 CDS YP_694180.1 110835321 4212274 2784709..2786823 1 NC_008260.1 catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 2786823 ppk 4212274 ppk Alcanivorax borkumensis SK2 polyphosphate kinase YP_694180.1 2784709 D 393595 CDS YP_694181.1 110835322 4213756 complement(2786919..2788409) 1 NC_008260.1 Region start changed from 2788442 to 2788409 (-33 bases); hypothetical protein 2788409 4213756 ABO_2461 Alcanivorax borkumensis SK2 hypothetical protein YP_694181.1 2786919 R 393595 CDS YP_694182.1 110835323 4211827 2788597..2788923 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00411 InterPro: Thioredoxin; High confidence in function and specificity; thioredoxin 2788923 trx-2 4211827 trx-2 Alcanivorax borkumensis SK2 thioredoxin YP_694182.1 2788597 D 393595 CDS YP_694183.1 110835324 4212041 2789211..2790470 1 NC_008260.1 An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 2790470 rho 4212041 rho Alcanivorax borkumensis SK2 transcription termination factor Rho YP_694183.1 2789211 D 393595 CDS YP_694184.1 110835325 4213757 2790659..2792119 1 NC_008260.1 hypothetical protein 2792119 4213757 ABO_2464 Alcanivorax borkumensis SK2 hypothetical protein YP_694184.1 2790659 D 393595 CDS YP_694185.1 110835326 4213758 2792316..2793791 1 NC_008260.1 3-octaprenyl-4-hydroxybenzoate carboxy-lyase TIGR00148 identified by sequencesimilarity; InterPro: Protein of unknown function DUF117; Specificity unclear; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 2793791 4213758 ABO_2465 Alcanivorax borkumensis SK2 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_694185.1 2792316 D 393595 CDS YP_694186.1 110835327 4213759 2793879..2795237 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01679 InterPro: FAD linked oxidase N-terminal; Family membership; FAD-dependent oxidoreductase 2795237 4213759 ABO_2466 Alcanivorax borkumensis SK2 FAD-dependent oxidoreductase YP_694186.1 2793879 D 393595 CDS YP_694187.1 110835328 4213760 2795286..2796356 1 NC_008260.1 hypothetical protein 2796356 4213760 ABO_2467 Alcanivorax borkumensis SK2 hypothetical protein YP_694187.1 2795286 D 393595 CDS YP_694188.1 110835329 4211949 complement(2796392..2797675) 1 NC_008260.1 InterPro: Transposase IS204/IS1001/IS1096/IS1165 family; High confidence in function and specificity; transposase 2797675 tnpA 4211949 tnpA Alcanivorax borkumensis SK2 transposase YP_694188.1 2796392 R 393595 CDS YP_694189.1 110835330 4213761 2797816..2798085 1 NC_008260.1 hypothetical protein 2798085 4213761 ABO_2469 Alcanivorax borkumensis SK2 hypothetical protein YP_694189.1 2797816 D 393595 CDS YP_694190.1 110835331 4213279 2798266..2799222 1 NC_008260.1 (Cation efflux system protein) identified by sequencesimilarity; InterPro: Cation efflux family; Family membership; cation efflux family protein 2799222 czcD 4213279 czcD Alcanivorax borkumensis SK2 cation efflux family protein YP_694190.1 2798266 D 393595 CDS YP_694191.1 110835332 4212583 complement(2799617..2802757) 1 NC_008260.1 identified by match to PFAM protein family HMMPF04295 InterPro: Heavy metal efflux pump CzcA; Family membership; cation efflux system protein 2802757 czcA 4212583 czcA Alcanivorax borkumensis SK2 cation efflux system protein YP_694191.1 2799617 R 393595 CDS YP_694192.1 110835333 4212587 complement(2802769..2803995) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01730; Family membership; cation efflux system protein 2803995 czcB 4212587 czcB Alcanivorax borkumensis SK2 cation efflux system protein YP_694192.1 2802769 R 393595 CDS YP_694193.1 110835334 4212591 complement(2804188..2805429) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01730; Family membership; cation efflux system protein 2805429 czcC 4212591 czcC Alcanivorax borkumensis SK2 cation efflux system protein YP_694193.1 2804188 R 393595 CDS YP_694194.1 110835335 4213762 complement(2805540..2805839) 1 NC_008260.1 (hypothetical protein); hypothetical protein 2805839 4213762 ABO_2474 Alcanivorax borkumensis SK2 hypothetical protein YP_694194.1 2805540 R 393595 CDS YP_694195.1 110835336 4211950 complement(2806056..2807345) 1 NC_008260.1 High confidence in function and specificity; transposase 2807345 tnpA 4211950 tnpA Alcanivorax borkumensis SK2 transposase YP_694195.1 2806056 R 393595 CDS YP_694196.1 110835337 4213763 2807486..2807755 1 NC_008260.1 conserved hypothetical protein, identical to A.borkumensis_cds_2469; hypothetical protein 2807755 4213763 ABO_2476 Alcanivorax borkumensis SK2 hypothetical protein YP_694196.1 2807486 D 393595 CDS YP_694197.1 110835338 4213281 2807936..2808880 1 NC_008260.1 homologous to CzcD situated upstream, (>90A identity, 95 AA similarity); identified by sequencesimilarity; InterPro: Cation efflux family; Family membership; cation efflux system protein 2808880 czcD2 4213281 czcD2 Alcanivorax borkumensis SK2 cation efflux system protein YP_694197.1 2807936 D 393595 CDS YP_694198.1 110835339 4213764 complement(2808926..2809486) 1 NC_008260.1 Pfam: Domain of unknown function DUF, DUF204; Conserved hypothetical protein; hypothetical protein 2809486 4213764 ABO_2478 Alcanivorax borkumensis SK2 hypothetical protein YP_694198.1 2808926 R 393595 CDS YP_694199.1 110835340 4213765 2810409..2810774 1 NC_008260.1 (conserved hypothetical protein TIGR00156) identified by match to PFAM protein family HMMPF04076; hypothetical protein 2810774 4213765 ABO_2479 Alcanivorax borkumensis SK2 hypothetical protein YP_694199.1 2810409 D 393595 CDS YP_694200.1 110835341 4212592 2811203..2812102 1 NC_008260.1 hypothetical protein 2812102 4212592 ABO_2480 Alcanivorax borkumensis SK2 hypothetical protein YP_694200.1 2811203 D 393595 CDS YP_694201.1 110835342 4211320 complement(2812258..2814531) 1 NC_008260.1 identified by sequence similarity; InterPro: TonB-dependent receptor protein; High confidence in function and specificity; outer membrane ferric enterobactin receptor 2814531 pfeA 4211320 pfeA Alcanivorax borkumensis SK2 outer membrane ferric enterobactin receptor YP_694201.1 2812258 R 393595 CDS YP_694202.1 110835343 4212593 complement(2814718..2816214) 1 NC_008260.1 Family membership; amidase 2816214 4212593 ABO_2482 Alcanivorax borkumensis SK2 amidase YP_694202.1 2814718 R 393595 CDS YP_694203.1 110835344 4212594 2816365..2817375 1 NC_008260.1 (alcohol dehydrogenase, zinc-containing) identified by match to TIGR protein family HMMTIGR01751; Pfam: ADH_zinc_N, Zinc-binding dehydrogenase; High confidence in function and specificity; alcohol dehydrogenase 2817375 4212594 ABO_2483 Alcanivorax borkumensis SK2 alcohol dehydrogenase YP_694203.1 2816365 D 393595 CDS YP_694204.1 110835345 4212595 complement(2817469..2818503) 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 2818503 4212595 ABO_2484 Alcanivorax borkumensis SK2 hypothetical protein YP_694204.1 2817469 R 393595 CDS YP_694205.1 110835346 4212596 complement(2818594..2819166) 1 NC_008260.1 (conserved hypothetical protein; hypothetical protein 2819166 4212596 ABO_2485 Alcanivorax borkumensis SK2 hypothetical protein YP_694205.1 2818594 R 393595 CDS YP_694206.1 110835347 4212492 2819477..2820961 1 NC_008260.1 identified by sequence similarity; Interpro:; Family membership; ferripyoverdine receptor 2820961 fpvA 4212492 fpvA Alcanivorax borkumensis SK2 ferripyoverdine receptor YP_694206.1 2819477 D 393595 CDS YP_694207.1 110835348 4212493 2820529..2821662 1 NC_008260.1 identified by sequence similarity; InterPro: TonB-dependent receptor protein; Family membership; ferripyoverdine receptor 2821662 fpvB 4212493 fpvB Alcanivorax borkumensis SK2 ferripyoverdine receptor YP_694207.1 2820529 D 393595 CDS YP_694208.1 110835349 4212597 complement(2821711..2822559) 1 NC_008260.1 identified by Glimmer2; InterPro: S1 RNA binding domain; hypothetical protein 2822559 4212597 ABO_2488 Alcanivorax borkumensis SK2 hypothetical protein YP_694208.1 2821711 R 393595 CDS YP_694209.1 110835350 4212598 complement(2822642..2823178) 1 NC_008260.1 (conserved hypothetical protein) identified by Glimmer2; hypothetical protein 2823178 4212598 ABO_2489 Alcanivorax borkumensis SK2 hypothetical protein YP_694209.1 2822642 R 393595 CDS YP_694210.1 110835351 4212599 complement(2823239..2823763) 1 NC_008260.1 hypothetical protein 2823763 4212599 ABO_2490 Alcanivorax borkumensis SK2 hypothetical protein YP_694210.1 2823239 R 393595 CDS YP_694211.1 110835352 4212600 2823846..2824655 1 NC_008260.1 hypothetical protein 2824655 4212600 ABO_2491 Alcanivorax borkumensis SK2 hypothetical protein YP_694211.1 2823846 D 393595 CDS YP_694212.1 110835353 4212601 complement(2824856..2825746) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00530 InterPro: Phospholipid and glycerol acyltransferase (from motifs_6.msf); Family membership; acyltransferase 2825746 4212601 ABO_2492 Alcanivorax borkumensis SK2 acyltransferase YP_694212.1 2824856 R 393595 CDS YP_694213.1 110835354 4212440 complement(2825909..2828146) 1 NC_008260.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 2828146 parC 4212440 parC Alcanivorax borkumensis SK2 DNA topoisomerase IV subunit A YP_694213.1 2825909 R 393595 CDS YP_694214.1 110835355 4212441 complement(2828346..2830232) 1 NC_008260.1 decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 2830232 parE 4212441 parE Alcanivorax borkumensis SK2 DNA topoisomerase IV subunit B YP_694214.1 2828346 R 393595 CDS YP_694215.1 110835356 4212602 complement(2830312..2830902) 1 NC_008260.1 identified by Glimmer2; InterPro: Esterase/lipase/thioesterase family active site; hypothetical protein 2830902 4212602 ABO_2495 Alcanivorax borkumensis SK2 hypothetical protein YP_694215.1 2830312 R 393595 CDS YP_694216.1 110835357 4212603 complement(2831097..2831903) 1 NC_008260.1 (icc protein) identified by sequence similarity; InterPro: DNA repair exonuclease; Function unclear; icc protein 2831903 4212603 ABO_2496 Alcanivorax borkumensis SK2 icc protein YP_694216.1 2831097 R 393595 CDS YP_694217.1 110835358 4212604 complement(2832109..2832567) 1 NC_008260.1 (conserved hypothetical protein; hypothetical protein 2832567 4212604 ABO_2497 Alcanivorax borkumensis SK2 hypothetical protein YP_694217.1 2832109 R 393595 CDS YP_694218.1 110835359 4211287 complement(2832564..2833208) 1 NC_008260.1 (ADP-ribose diphosphatase)(Adenosine diphosphoribose pyrophosphatase) (ADPR-PPase) (ADP-ribosephosphohydrolase) belongs to the nudix hydrolase family, nudf subfamily.; Family membership; ADP-ribose pyrophosphatase 2833208 adpP 4211287 adpP Alcanivorax borkumensis SK2 ADP-ribose pyrophosphatase YP_694218.1 2832564 R 393595 CDS YP_694219.1 110835360 4211935 complement(2833192..2835066) 1 NC_008260.1 required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 2835066 thiC 4211935 thiC Alcanivorax borkumensis SK2 thiamine biosynthesis protein ThiC YP_694219.1 2833192 R 393595 CDS YP_694220.1 110835361 4211915 2835232..2836677 1 NC_008260.1 (outer membrane efflux protein TolC) belongs to the prtf family of secretion proteins. Pfam: Outer membrane efflux protein, OEP; Family membership; outer membrane protein TolC 2836677 tolC 4211915 tolC Alcanivorax borkumensis SK2 outer membrane protein TolC YP_694220.1 2835232 D 393595 CDS YP_694221.1 110835362 4211959 complement(2836868..2838148) 1 NC_008260.1 (kdtA) identified by sequence similarity; High confidence in function and specificity; 3-deoxy-D-manno-octulosonic-acid transferase 2838148 waaA 4211959 waaA Alcanivorax borkumensis SK2 3-deoxy-D-manno-octulosonic-acid transferase YP_694221.1 2836868 R 393595 CDS YP_694222.1 110835363 4212605 2838296..2839504 1 NC_008260.1 (conserved hypothetical protein); FAD-binding oxidoreductase 2839504 4212605 ABO_2502 Alcanivorax borkumensis SK2 FAD-binding oxidoreductase YP_694222.1 2838296 D 393595 CDS YP_694223.1 110835364 4212606 2839747..2840544 1 NC_008260.1 identified by match to PFAM protein family HMMPF00248 InterPro: Aldo/keto reductase family; Family membership; aldo/keto reductase 2840544 4212606 ABO_2503 Alcanivorax borkumensis SK2 aldo/keto reductase YP_694223.1 2839747 D 393595 CDS YP_694224.1 110835365 4212607 2840562..2840891 1 NC_008260.1 hypothetical protein 2840891 4212607 ABO_2504 Alcanivorax borkumensis SK2 hypothetical protein YP_694224.1 2840562 D 393595 CDS YP_694225.1 110835366 4212608 complement(2841012..2841857) 1 NC_008260.1 hypothetical protein 2841857 4212608 ABO_2505 Alcanivorax borkumensis SK2 hypothetical protein YP_694225.1 2841012 R 393595 CDS YP_694226.1 110835367 4212609 2842197..2843996 1 NC_008260.1 catalyzes the hydrolysis of allophanate; allophanate hydrolase 2843996 4212609 ABO_2506 Alcanivorax borkumensis SK2 allophanate hydrolase YP_694226.1 2842197 D 393595 CDS YP_694227.1 110835368 4212610 2843996..2844205 1 NC_008260.1 predicted by Glimmer/Critica.; hypothetical protein 2844205 4212610 ABO_2507 Alcanivorax borkumensis SK2 hypothetical protein YP_694227.1 2843996 D 393595 CDS YP_694228.1 110835369 4213060 2844216..2844938 1 NC_008260.1 (transcriptional regulator, ) identified by match to PFAM protein family HMMPF00392 InterPro: Bacterial regulatory proteins GntR family; Family membership; GntR family transcriptional regulator 2844938 4213060 ABO_2508 Alcanivorax borkumensis SK2 GntR family transcriptional regulator YP_694228.1 2844216 D 393595 CDS YP_694229.1 110835370 4213061 2845046..2846344 1 NC_008260.1 (branched-chain amino acid ABC transporter, ); identify by sequence similarity.; Family membership; branched-chain amino acid ABC transporter 2846344 4213061 ABO_2509 Alcanivorax borkumensis SK2 branched-chain amino acid ABC transporter YP_694229.1 2845046 D 393595 CDS YP_694230.1 110835371 4213062 2846513..2848189 1 NC_008260.1 (branched-chain amino acid ABC transporter permease protein ) identified by match to PFAM protein family HMMPF02653; Family membership; branched-chain amino acid ABC transporter permease 2848189 4213062 ABO_2510 Alcanivorax borkumensis SK2 branched-chain amino acid ABC transporter permease YP_694230.1 2846513 D 393595 CDS YP_694231.1 110835372 4213063 2848191..2849351 1 NC_008260.1 (branched-chain amino acid ABC transporter permease protein ) identified by sequence similarity and by match to PFAM protein family HMMPF02653; InterPro: Binding-system dependent bacterial transporters (araH livH/limM families); Function unclear; branched-chain amino acid ABC transporter permease 2849351 4213063 ABO_2511 Alcanivorax borkumensis SK2 branched-chain amino acid ABC transporter permease YP_694231.1 2848191 D 393595 CDS YP_694232.1 110835373 4213064 2849348..2850193 1 NC_008260.1 identified by match to PFAM protein family HMMPF00005 InterPro: ABC transporter; Specificity unclear; branched-chain amino acid ABC transporter ATP-binding protein 2850193 4213064 ABO_2512 Alcanivorax borkumensis SK2 branched-chain amino acid ABC transporter ATP-binding protein YP_694232.1 2849348 D 393595 CDS YP_694233.1 110835374 4213065 2850358..2851053 1 NC_008260.1 identified by sequence similarity; identified by match to TIGR protein family HMMTIGR01187 InterPro: ABC transporter; Specificity unclear; amino acid ABC transporter ATP-binding protein 2851053 4213065 ABO_2513 Alcanivorax borkumensis SK2 amino acid ABC transporter ATP-binding protein YP_694233.1 2850358 D 393595 CDS YP_694234.1 110835375 4213066 complement(2851212..2851625) 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2851625 4213066 ABO_2514 Alcanivorax borkumensis SK2 hypothetical protein YP_694234.1 2851212 R 393595 CDS YP_694235.1 110835376 4213067 2851696..2852643 1 NC_008260.1 (transporter bile acid/Na+ symporter family) identified by sequence similarity; InterPro: Sodium bile acid symporter; Family membership; Na+ symporter family protein 2852643 4213067 ABO_2515 Alcanivorax borkumensis SK2 Na+ symporter family protein YP_694235.1 2851696 D 393595 CDS YP_694236.1 110835377 4213068 complement(2852725..2854269) 1 NC_008260.1 (cadA-1) (cadmium translocating P-type ATPase) identified by sequence similarity; hypothetical protein 2854269 4213068 ABO_2516 Alcanivorax borkumensis SK2 hypothetical protein YP_694236.1 2852725 R 393595 CDS YP_694237.1 110835378 4213069 2854348..2856168 1 NC_008260.1 identified by sequencesimilarity; InterPro: Histidine kinase C-terminal; Family membership; two-component sensor protein 2856168 4213069 ABO_2517 Alcanivorax borkumensis SK2 two-component sensor protein YP_694237.1 2854348 D 393595 CDS YP_694238.1 110835379 4213070 complement(2856165..2856776) 1 NC_008260.1 (transcription regulator, )identified by sequence similarity; InterPro: Response regulator receiver domain; Family membership; transcriptional regulator 2856776 4213070 ABO_2518 Alcanivorax borkumensis SK2 transcriptional regulator YP_694238.1 2856165 R 393595 CDS YP_694239.1 110835380 4213071 2857114..2857581 1 NC_008260.1 identified by match to PFAM protein family HMMPF00072 InterPro: Response regulator receiver domain; Family membership; response regulator 2857581 4213071 ABO_2519 Alcanivorax borkumensis SK2 response regulator YP_694239.1 2857114 D 393595 CDS YP_694240.1 110835381 4213072 2857627..2859078 1 NC_008260.1 sensor histidin kinase, contains PAS-fold, HisKA and HATPase_c domains; Conserved hypothetical protein; sensor histidine kinase 2859078 4213072 ABO_2520 Alcanivorax borkumensis SK2 sensor histidine kinase YP_694240.1 2857627 D 393595 CDS YP_694241.1 110835382 4213073 2859068..2859760 1 NC_008260.1 hypothetical protein 2859760 4213073 ABO_2521 Alcanivorax borkumensis SK2 hypothetical protein YP_694241.1 2859068 D 393595 CDS YP_694242.1 110835383 4213074 complement(2860067..2863132) 1 NC_008260.1 (RND efflux transporter)(AcrB/AcrD/AcrF family protein) identified by match to PFAM protein family HMMPF03599 InterPro: Acriflavin resistance protein; Conserved hypothetical protein; RND efflux transporter 2863132 4213074 ABO_2522 Alcanivorax borkumensis SK2 RND efflux transporter YP_694242.1 2860067 R 393595 CDS YP_694243.1 110835384 4213075 complement(2863146..2864363) 1 NC_008260.1 (RND transporter membrane fusion protein) identified by match to TIGR protein family HMMTIGR01730 InterPro: HlyD family secretion protein; High confidence in function and specificity; RND efflux membrane fusion protein 2864363 4213075 ABO_2523 Alcanivorax borkumensis SK2 RND efflux membrane fusion protein YP_694243.1 2863146 R 393595 CDS YP_694244.1 110835385 4213076 2864486..2865136 1 NC_008260.1 (transcriptional regulator, ) identified by match to PFAM protein family HMMPF00440 InterPro: Bacterial regulatory proteins TetR family; Family membership; TetR family transcriptional regulator 2865136 4213076 ABO_2524 Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_694244.1 2864486 D 393595 CDS YP_694245.1 110835386 4213077 complement(2865115..2865249) 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2865249 4213077 ABO_2525 Alcanivorax borkumensis SK2 hypothetical protein YP_694245.1 2865115 R 393595 CDS YP_694246.1 110835387 4213078 2865379..2865519 1 NC_008260.1 identified by sequence similarity.; hypothetical protein 2865519 4213078 ABO_2526 Alcanivorax borkumensis SK2 hypothetical protein YP_694246.1 2865379 D 393595 CDS YP_694247.1 110835388 4213079 complement(2865663..2866106) 1 NC_008260.1 N-terminal fragment of a phosphoenolpyruvate-protein phosphotransferase; identified by sequence similarity to Pfam family protein PF00391, PF01590, PF02896 Interpro: belongs to the pep-utilizing enzymes family: IPR00593, IPR006318/IPR000121; Family membership; phosphoenolpyruvate-protein phosphotransferase fragment 2866106 4213079 ABO_2527 Alcanivorax borkumensis SK2 phosphoenolpyruvate-protein phosphotransferase fragment YP_694247.1 2865663 R 393595 CDS YP_694248.1 110835389 4213530 complement(2866720..2867925) 1 NC_008260.1 identified by match to PFAM protein family HMMPF03602 InterPro: SAM (and some other nucleotide) binding motif; hypothetical protein 2867925 4213530 ABO_2528 Alcanivorax borkumensis SK2 hypothetical protein YP_694248.1 2866720 R 393595 CDS YP_694249.1 110835390 4213411 complement(2868143..2869390) 1 NC_008260.1 Ammonium transporter, Ammonium Transporter Family, amt: ammonium transporter; High confidence in function and specificity; ammonium transporter 2869390 amtB3 4213411 amtB3 Alcanivorax borkumensis SK2 ammonium transporter YP_694249.1 2868143 R 393595 CDS YP_694250.1 110835391 4211187 complement(2869464..2869802) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF00543 InterPro: Nitrogen regulatory protein P-II; High confidence in function and specificity; nitrogen regulatory protein P-II 2869802 glnK-2 4211187 glnK-2 Alcanivorax borkumensis SK2 nitrogen regulatory protein P-II YP_694250.1 2869464 R 393595 CDS YP_694251.1 110835392 4213531 2870114..2870362 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 2870362 4213531 ABO_2531 Alcanivorax borkumensis SK2 hypothetical protein YP_694251.1 2870114 D 393595 CDS YP_694252.1 110835393 4213532 2870530..2872026 1 NC_008260.1 (magnesium chelatase-related protein, ) identified by sequence similarity; InterPro: Mg chelatase-related protein; Family membership; magnesium chelatase-like protein 2872026 4213532 ABO_2532 Alcanivorax borkumensis SK2 magnesium chelatase-like protein YP_694252.1 2870530 D 393595 CDS YP_694253.1 110835394 4213533 complement(2872140..2873339) 1 NC_008260.1 (acyl-CoA dehydrogenase, ) identified by sequencesimilarity; InterPro: Acyl-CoA dehydrogenase; High confidence in function and specificity; acyl-CoA dehydrogenase 2873339 4213533 ABO_2533 Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_694253.1 2872140 R 393595 CDS YP_694254.1 110835395 4213534 complement(2873418..2874173) 1 NC_008260.1 (short-chain dehydrogenase/reductase, ) identified by sequencesimilarity; InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity; short-chain dehydrogenase/reductase 2874173 4213534 ABO_2534 Alcanivorax borkumensis SK2 short-chain dehydrogenase/reductase YP_694254.1 2873418 R 393595 CDS YP_694255.1 110835396 4211793 complement(2874238..2874828) 1 NC_008260.1 (yfcd) identified by sequencesimilarity; InterPro: Isopentenyl-diphosphate delta-isomerase; Family membership; Nudix hydrolase 2874828 yfcd 4211793 yfcd Alcanivorax borkumensis SK2 Nudix hydrolase YP_694255.1 2874238 R 393595 CDS YP_694256.1 110835397 4213535 complement(2874942..2875988) 1 NC_008260.1 (transcriptional regulator, ) identified by match to PFAM protein family HMMPF00165 and by sequence similarity to the arac/xyls family of transcriptional regulators. InterPro: AraC type helix-turn-helix; Family membership; AraC family transcriptional regulator 2875988 4213535 ABO_2536 Alcanivorax borkumensis SK2 AraC family transcriptional regulator YP_694256.1 2874942 R 393595 CDS YP_694257.1 110835398 4212633 complement(2876520..2877209) 1 NC_008260.1 (Ribosomal small subunit pseudouridine synthase A), (16Spseudouridylate 516 synthase), (16S pseudouridine 516 synthase), (Uracilhydrolyase).(S4 domain protein) identified by match to PFAM protein family HMMPF01479 InterPro: Conserved hypothetical protein 93; High confidence in function and specificity; pseudouridylate synthase 2877209 rsuA 4212633 rsuA Alcanivorax borkumensis SK2 pseudouridylate synthase YP_694257.1 2876520 R 393595 CDS YP_694258.1 110835399 4212038 2877320..2879341 1 NC_008260.1 identified by match to PFAM protein family HMMPF01443 InterPro: UvrD/REP helicase; High confidence in function and specificity; ATP-dependent DNA helicase Rep 2879341 rep 4212038 rep Alcanivorax borkumensis SK2 ATP-dependent DNA helicase Rep YP_694258.1 2877320 D 393595 CDS YP_694259.1 110835400 4213536 complement(2879496..2879855) 1 NC_008260.1 (Cytochrome c5, ) identified by sequencesimilarity; Family membership; cytochrome c5 2879855 4213536 ABO_2539 Alcanivorax borkumensis SK2 cytochrome c5 YP_694259.1 2879496 R 393595 CDS YP_694260.1 110835401 4213537 complement(2879861..2880328) 1 NC_008260.1 (cytochrome c5) identified by sequence similarity; InterPro: Cytochrome c class I a monoheme c-type cytochrome. it is unreactive with cytochrome c reductase or oxidase.; High confidence in function and specificity; cytochrome c5 2880328 4213537 ABO_2540 Alcanivorax borkumensis SK2 cytochrome c5 YP_694260.1 2879861 R 393595 CDS YP_694261.1 110835402 4211613 complement(2880586..2883180) 1 NC_008260.1 identified by sequence similarity; InterPro: Histidine kinase C-terminal; Specificity unclear; sensory box histidine kinase PhoR 2883180 phoR 4211613 phoR Alcanivorax borkumensis SK2 sensory box histidine kinase PhoR YP_694261.1 2880586 R 393595 CDS YP_694262.1 110835403 4213538 complement(2883184..2884278) 1 NC_008260.1 hypothetical protein 2884278 4213538 ABO_2542 Alcanivorax borkumensis SK2 hypothetical protein YP_694262.1 2883184 R 393595 CDS YP_694263.1 110835404 4211610 complement(2884289..2885008) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01387 InterPro: Response regulator receiver domain; Specificity unclear; DNA-binding heavy metal response regulator 2885008 phoP 4211610 phoP Alcanivorax borkumensis SK2 DNA-binding heavy metal response regulator YP_694263.1 2884289 R 393595 CDS YP_694264.1 110835405 4213539 complement(2885130..2885459) 1 NC_008260.1 (small multidrug resistance protein, ) identified by match to PFAM protein family HMMPF00893 InterPro: Integral membrane protein DUF7; Family membership; small multidrug resistance protein 2885459 4213539 ABO_2544 Alcanivorax borkumensis SK2 small multidrug resistance protein YP_694264.1 2885130 R 393595 CDS YP_694265.1 110835406 4213540 complement(2885841..2886851) 1 NC_008260.1 (transcriptional regulator, ) identified by match to PFAM protein family HMMPF00165 InterPro: AraC type helix-turn-helix; Family membership; AraC family transcriptional regulator 2886851 4213540 ABO_2545 Alcanivorax borkumensis SK2 AraC family transcriptional regulator YP_694265.1 2885841 R 393595 CDS YP_694266.1 110835407 4213541 2886946..2887887 1 NC_008260.1 (fatty acid desaturase, ) identified by sequencesimilarity; InterPro: Fatty acid desaturase type 2; High confidence in function and specificity; fatty acid desaturase 2887887 4213541 ABO_2546 Alcanivorax borkumensis SK2 fatty acid desaturase YP_694266.1 2886946 D 393595 CDS YP_694267.1 110835408 4213542 complement(2888136..2889740) 1 NC_008260.1 identified by match to PFAM protein family HMMPF03977 shows similarity to uncharacterized iron-regulated membrane protein (DUF337).This is a family of uncharacterized iron-regulated membrane proteins.; Function unclear; hypothetical protein 2889740 4213542 ABO_2547 Alcanivorax borkumensis SK2 hypothetical protein YP_694267.1 2888136 R 393595 CDS YP_694268.1 110835409 4213543 complement(2889737..2890297) 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2890297 4213543 ABO_2548 Alcanivorax borkumensis SK2 hypothetical protein YP_694268.1 2889737 R 393595 CDS YP_694269.1 110835410 4213544 complement(2890344..2890931) 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2890931 4213544 ABO_2549 Alcanivorax borkumensis SK2 hypothetical protein YP_694269.1 2890344 R 393595 CDS YP_694270.1 110835411 4213545 complement(2890928..2891539) 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2891539 4213545 ABO_2550 Alcanivorax borkumensis SK2 hypothetical protein YP_694270.1 2890928 R 393595 CDS YP_694271.1 110835412 4213546 2891823..2892548 1 NC_008260.1 identified by sequence similarity; hypothetical protein 2892548 4213546 ABO_2551 Alcanivorax borkumensis SK2 hypothetical protein YP_694271.1 2891823 D 393595 CDS YP_694272.1 110835413 4213547 complement(2892610..2892846) 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2892846 4213547 ABO_2552 Alcanivorax borkumensis SK2 hypothetical protein YP_694272.1 2892610 R 393595 CDS YP_694273.1 110835414 4213548 2893248..2894372 1 NC_008260.1 (lip) (lipase) identified by sequencesimilarity; InterPro: Esterase/lipase/thioesterase family active site; hypothetical protein 2894372 4213548 ABO_2553 Alcanivorax borkumensis SK2 hypothetical protein YP_694273.1 2893248 D 393595 CDS YP_694274.1 110835415 4213296 2894441..2894671 1 NC_008260.1 hypothetical protein 2894671 4213296 ABO_2554 Alcanivorax borkumensis SK2 hypothetical protein YP_694274.1 2894441 D 393595 CDS YP_694275.1 110835416 4211508 complement(2894827..2896167) 1 NC_008260.1 (O-acetylhomoserine sulfhydrylase, O-acetylhomoserine (thiol)-lyase, oah sulfhydrylase, homocysteine synthase) identified by sequence similarity; identified by match to PFAM protein family HMMPF01053; InterPro: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; High confidence in function and specificity; O-acetylhomoserine sulfhydrylase 2896167 metY 4211508 metY Alcanivorax borkumensis SK2 O-acetylhomoserine sulfhydrylase YP_694275.1 2894827 R 393595 CDS YP_694276.1 110835417 4213349 complement(2896177..2897043) 1 NC_008260.1 (enoyl-CoA hydratase/isomerase family protein) identified by match to PFAM protein family HMMPF00378 InterPro: Enoyl-CoA hydratase/isomerase; High confidence in function and specificity; enoyl-CoA hydratase 2897043 eno 4213349 eno Alcanivorax borkumensis SK2 enoyl-CoA hydratase YP_694276.1 2896177 R 393595 CDS YP_694277.1 110835418 4213297 complement(2897431..2897838) 1 NC_008260.1 (CBS domain protein) identified by match to PFAM protein family HMMPF04290 InterPro: CBS domain CBS domains are small intracellular modules of unknown function. They are mostly found in 2 or four copies within a protein. wo CBS domains are found in inosine-monophosphate dehydrogenase from all species, however the CBS domains are not needed for activity. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet.; Family membership; hypothetical protein 2897838 4213297 ABO_2557 Alcanivorax borkumensis SK2 hypothetical protein YP_694277.1 2897431 R 393595 CDS YP_694278.1 110835419 4213298 2898054..2900786 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2900786 4213298 ABO_2558 Alcanivorax borkumensis SK2 hypothetical protein YP_694278.1 2898054 D 393595 CDS YP_694279.1 110835420 4213299 2900779..2901582 1 NC_008260.1 identify by sequence similarity; Function unclear; hypothetical protein 2901582 4213299 ABO_2559 Alcanivorax borkumensis SK2 hypothetical protein YP_694279.1 2900779 D 393595 CDS YP_694280.1 110835421 4213300 complement(2901609..2901890) 1 NC_008260.1 hypothetical protein 2901890 4213300 ABO_2560 Alcanivorax borkumensis SK2 hypothetical protein YP_694280.1 2901609 R 393595 CDS YP_694281.1 110835422 4211662 complement(2901941..2903182) 1 NC_008260.1 NnrS protein. pfam05940, This family consists of several bacterial NnrS like proteins. NnrS is a heme-Cu protein and a member of the short-chain dehydrogenase family. Expression of nnrS is dependent on the transcriptional regulator NnrR, which also regulates expression of genes required for the reduction of nitrite to nitrous oxide, including nirK and nor. NnrS is a haem-and copper-containing membrane protein. Genes encoding orthologues of NnrS are sometimes but not always found in bacteria encoding nitrite and/or nitric oxide reductase; hypothetical protein 2903182 nnrS 4211662 nnrS Alcanivorax borkumensis SK2 hypothetical protein YP_694281.1 2901941 R 393595 CDS YP_694282.1 110835423 4213301 complement(2903305..2904192) 1 NC_008260.1 predicted metal-dependent hydrolase; hypothetical protein 2904192 4213301 ABO_2562 Alcanivorax borkumensis SK2 hypothetical protein YP_694282.1 2903305 R 393595 CDS YP_694283.1 110835424 4213302 complement(2904319..2904951) 1 NC_008260.1 predicted N6-adenine-specific methylase; hypothetical protein 2904951 4213302 ABO_2563 Alcanivorax borkumensis SK2 hypothetical protein YP_694283.1 2904319 R 393595 CDS YP_694284.1 110835425 4213303 complement(2904923..2906365) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00675 InterPro: Insulinase family (Peptidase family M16); hypothetical protein 2906365 4213303 ABO_2564 Alcanivorax borkumensis SK2 hypothetical protein YP_694284.1 2904923 R 393595 CDS YP_694285.1 110835426 4213304 complement(2906362..2907714) 1 NC_008260.1 identified by sequencesimilarity; Function unclear; zinc protease 2907714 4213304 ABO_2565 Alcanivorax borkumensis SK2 zinc protease YP_694285.1 2906362 R 393595 CDS YP_694286.1 110835427 4211561 2907918..2909111 1 NC_008260.1 (signal recognition particle receptor FtsY) identified by sequencesimilarity; InterPro: Cell division transporter substrate-binding protein FtsY; High confidence in function and specificity; cell division protein FtsY 2909111 ftsY 4211561 ftsY Alcanivorax borkumensis SK2 cell division protein FtsY YP_694286.1 2907918 D 393595 CDS YP_694287.1 110835428 4211553 2909180..2909866 1 NC_008260.1 (aapP) (general amino acid ABC transporter ATP-bindingprotein) identified by match to TIGR protein family HMMTIGR00968; High confidence in function and specificity; cell division ATP-binding protein FtsE 2909866 ftsE 4211553 ftsE Alcanivorax borkumensis SK2 cell division ATP-binding protein FtsE YP_694287.1 2909180 D 393595 CDS YP_694288.1 110835429 4211560 2909856..2910908 1 NC_008260.1 (cell division ABC efflux transporter permeaseprotein FtsX) identified by sequencesimilarity; High confidence in function and specificity; cell division protein FtsX 2910908 ftsX 4211560 ftsX Alcanivorax borkumensis SK2 cell division protein FtsX YP_694288.1 2909856 D 393595 CDS YP_694289.1 110835430 4212368 2911252..2912121 1 NC_008260.1 (htpR), (hin), (fam). , (Heat shock regulatory protein F33.4). identified by sequence similarity; InterPro: Sigma-70 factor family; High confidence in function and specificity; RNA polymerase sigma-32 factor 2912121 rpoH 4212368 rpoH Alcanivorax borkumensis SK2 RNA polymerase sigma-32 factor YP_694289.1 2911252 D 393595 CDS YP_694290.1 110835431 4213305 2912370..2912639 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 2912639 4213305 ABO_2570 Alcanivorax borkumensis SK2 hypothetical protein YP_694290.1 2912370 D 393595 CDS YP_694291.1 110835432 4213306 2912648..2912845 1 NC_008260.1 Region start changed from 2912636 to 2912648 (-12 bases); thiamine biosynthesis protein ThiS 2912845 4213306 ABO_2571 Alcanivorax borkumensis SK2 thiamine biosynthesis protein ThiS YP_694291.1 2912648 D 393595 CDS YP_694292.1 110835433 4211938 2912974..2913753 1 NC_008260.1 functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 2913753 thiG 4211938 thiG Alcanivorax borkumensis SK2 thiazole synthase YP_694292.1 2912974 D 393595 CDS YP_694293.1 110835434 4213307 2913993..2914712 1 NC_008260.1 (conserved hypothetical protein TIGR00091) identified by match to PFAM protein family HMMPF02390 InterPro: methyltransferase; hypothetical protein 2914712 4213307 ABO_2573 Alcanivorax borkumensis SK2 hypothetical protein YP_694293.1 2913993 D 393595 CDS YP_694294.1 110835435 4213308 complement(2914784..2915401) 1 NC_008260.1 predicted by Glimmer/Critica); hypothetical protein 2915401 4213308 ABO_2574 Alcanivorax borkumensis SK2 hypothetical protein YP_694294.1 2914784 R 393595 CDS YP_694295.1 110835436 4213309 complement(2915491..2916792) 1 NC_008260.1 hypothetical protein 2916792 4213309 ABO_2575 Alcanivorax borkumensis SK2 hypothetical protein YP_694295.1 2915491 R 393595 CDS YP_694296.1 110835437 4211507 2916998..2918200 1 NC_008260.1 Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 2918200 metX 4211507 metX Alcanivorax borkumensis SK2 homoserine O-acetyltransferase YP_694296.1 2916998 D 393595 CDS YP_694297.1 110835438 4211506 2918193..2918783 1 NC_008260.1 (methionine biosynthesis protein) identified by sequencesimilarity; High confidence in function and specificity; SAM-dependent methyltransferases 2918783 metW 4211506 metW Alcanivorax borkumensis SK2 SAM-dependent methyltransferases YP_694297.1 2918193 D 393595 CDS YP_694298.1 110835439 4213310 2918941..2919531 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00042 InterPro: Ham1 family; Family membership; Ham1 protein 2919531 4213310 ABO_2578 Alcanivorax borkumensis SK2 Ham1 protein YP_694298.1 2918941 D 393595 CDS YP_694299.1 110835440 4213311 complement(2919646..2920170) 1 NC_008260.1 identified by match to PFAM protein family HMMPF02639 InterPro: DUF188; hypothetical protein 2920170 4213311 ABO_2579 Alcanivorax borkumensis SK2 hypothetical protein YP_694299.1 2919646 R 393595 CDS YP_694300.1 110835441 4213312 2920205..2921389 1 NC_008260.1 (oxygen-independent coproporphyrinogen IIIoxidase ) identified by match to PFAM protein family HMMPF04055; Function unclear; coproporphyrinogen oxidase 2921389 4213312 ABO_2580 Alcanivorax borkumensis SK2 coproporphyrinogen oxidase YP_694300.1 2920205 D 393595 CDS YP_694301.1 110835442 4213313 2921475..2922242 1 NC_008260.1 conserved hypothetical protein; AcrR family transcriptional regulator 2922242 4213313 ABO_2581 Alcanivorax borkumensis SK2 AcrR family transcriptional regulator YP_694301.1 2921475 D 393595 CDS YP_694302.1 110835443 4213314 complement(2922380..2922808) 1 NC_008260.1 hypothetical protein 2922808 4213314 ABO_2582 Alcanivorax borkumensis SK2 hypothetical protein YP_694302.1 2922380 R 393595 CDS YP_694303.1 110835444 4211249 complement(2922999..2923808) 1 NC_008260.1 (FAPY-DNAglycosylase).identified by sequence similarity; InterPro: Formamidopyrimidine-DNA glycolase; High confidence in function and specificity; formamidopyrimidine-DNA glycosylase 2923808 mutM 4211249 mutM Alcanivorax borkumensis SK2 formamidopyrimidine-DNA glycosylase YP_694303.1 2922999 R 393595 CDS YP_694304.1 110835445 4211341 2923960..2925936 1 NC_008260.1 (N-methylhydantoinase A, hydantoin utilization protein A) identified by sequence similarity; identified by mtach to PFAM protein family HMMPF01968 InterPro: Hydantoinase/oxoprolinase; High confidence in function and specificity; N-methylhydantoinase A 2925936 hyuA 4211341 hyuA Alcanivorax borkumensis SK2 N-methylhydantoinase A YP_694304.1 2923960 D 393595 CDS YP_694305.1 110835446 4213315 2926078..2927265 1 NC_008260.1 (fatty acid desaturase family protein, ) identified by match to PFAM protein family HMMPF00487 InterPro: Fatty acid desaturase; High confidence in function and specificity; fatty acid desaturase 2927265 4213315 ABO_2585 Alcanivorax borkumensis SK2 fatty acid desaturase YP_694305.1 2926078 D 393595 CDS YP_694306.1 110835447 4213374 complement(2927628..2928029) 1 NC_008260.1 (conserved hyphotetical protein); hypothetical protein 2928029 4213374 ABO_2586 Alcanivorax borkumensis SK2 hypothetical protein YP_694306.1 2927628 R 393595 CDS YP_694307.1 110835448 4213375 complement(2928083..2928709) 1 NC_008260.1 identified by sequence similarity and by match to PFAM protein family HMMPF01810; InterPro: Lysine exporter protein (LYSE/YGGA); Family membership; amino acid transporter LysE 2928709 4213375 ABO_2587 Alcanivorax borkumensis SK2 amino acid transporter LysE YP_694307.1 2928083 R 393595 CDS YP_694308.1 110835449 4213376 complement(2928723..2929013) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Integrase catalytic core; Family membership; transposase-like protein 2929013 4213376 ABO_2588 Alcanivorax borkumensis SK2 transposase-like protein YP_694308.1 2928723 R 393595 CDS YP_694309.1 110835450 4213377 complement(2929124..2929399) 1 NC_008260.1 hypothetical protein 2929399 4213377 ABO_2589 Alcanivorax borkumensis SK2 hypothetical protein YP_694309.1 2929124 R 393595 CDS YP_694310.1 110835451 4213378 complement(2929489..2930052) 1 NC_008260.1 Hypothetical protein; hypothetical protein 2930052 4213378 ABO_2590 Alcanivorax borkumensis SK2 hypothetical protein YP_694310.1 2929489 R 393595 CDS YP_694311.1 110835452 4211690 complement(2930712..2932178) 1 NC_008260.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 2932178 gcvP-1 4211690 gcvP-1 Alcanivorax borkumensis SK2 glycine dehydrogenase subunit 2 YP_694311.1 2930712 R 393595 CDS YP_694312.1 110835453 4211691 complement(2932175..2933533) 1 NC_008260.1 acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 2933533 gcvP-2 4211691 gcvP-2 Alcanivorax borkumensis SK2 glycine dehydrogenase subunit 1 YP_694312.1 2932175 R 393595 CDS YP_694313.1 110835454 4211689 complement(2933679..2934065) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF01597 and TIGRFAM protein family HMMTIGR00527 InterPro: Glycine cleavage H-protein; High confidence in function and specificity; glycine cleavage system H protein 2934065 gcvH 4211689 gcvH Alcanivorax borkumensis SK2 glycine cleavage system H protein YP_694313.1 2933679 R 393595 CDS YP_694314.1 110835455 4211692 complement(2934243..2935322) 1 NC_008260.1 (glycine cleavage system T protein, aminomethyltransferase) identified by sequence similarity; identified by match to TIGRFAM protein family HMMTIGR00528 InterPro: Glycine cleavage T-protein (aminomethyl transferase); High confidence in function and specificity; glycine cleavage system T protein 2935322 gcvT 4211692 gcvT Alcanivorax borkumensis SK2 glycine cleavage system T protein YP_694314.1 2934243 R 393595 CDS YP_694315.1 110835456 4213379 complement(2935502..2938462) 1 NC_008260.1 hypothetical protein 2938462 4213379 ABO_2595 Alcanivorax borkumensis SK2 hypothetical protein YP_694315.1 2935502 R 393595 CDS YP_694316.1 110835457 4213380 complement(2939080..2940654) 1 NC_008260.1 (iron ABC transporter permease protein ) identified by sequence similarity; InterPro: Binding-protein-dependent transport systems inner membrane component; Family membership; Fe-ABC transporter permease 2940654 4213380 ABO_2596 Alcanivorax borkumensis SK2 Fe-ABC transporter permease YP_694316.1 2939080 R 393595 CDS YP_694317.1 110835458 4213381 complement(2940658..2941683) 1 NC_008260.1 (iron ABC transporter periplasmic iron-bindingprotein ) identified by sequence similarity; InterPro: Bacterial extracellular solute-binding protein family 1; Family membership; iron ABC transporter substrate-binding protein 2941683 4213381 ABO_2597 Alcanivorax borkumensis SK2 iron ABC transporter substrate-binding protein YP_694317.1 2940658 R 393595 CDS YP_694318.1 110835459 4213382 complement(2941729..2943012) 1 NC_008260.1 Family membership; oxygenase 2943012 4213382 ABO_2598 Alcanivorax borkumensis SK2 oxygenase YP_694318.1 2941729 R 393595 CDS YP_694319.1 110835460 4213383 complement(2943040..2944176) 1 NC_008260.1 Family membership; oxygenase 2944176 4213383 ABO_2599 Alcanivorax borkumensis SK2 oxygenase YP_694319.1 2943040 R 393595 CDS YP_694320.1 110835461 4211315 complement(2944387..2945658) 1 NC_008260.1 (aminopeptidase P II, xaa-pro aminopeptidase, x-pro aminopeptidase, aminoacylproline aminopeptidase) identified by sequence similarity; InterPro: metallopeptidase family M24; High confidence in function and specificity; aminopeptidase 2945658 pepP 4211315 pepP Alcanivorax borkumensis SK2 aminopeptidase YP_694320.1 2944387 R 393595 CDS YP_694321.1 110835462 4213384 complement(2945819..2946409) 1 NC_008260.1 identified by sequencesimilarity; hypothetical protein 2946409 4213384 ABO_2601 Alcanivorax borkumensis SK2 hypothetical protein YP_694321.1 2945819 R 393595 CDS YP_694322.1 110835463 4213385 2946642..2946854 1 NC_008260.1 hypothetical protein 2946854 4213385 ABO_2602 Alcanivorax borkumensis SK2 hypothetical protein YP_694322.1 2946642 D 393595 CDS YP_694323.1 110835464 4213386 2946900..2947211 1 NC_008260.1 hypothetical protein 2947211 4213386 ABO_2603 Alcanivorax borkumensis SK2 hypothetical protein YP_694323.1 2946900 D 393595 CDS YP_694324.1 110835465 4213387 2947556..2948137 1 NC_008260.1 5-formyltetrahydrofolate cyclo-ligase family protein identified by match to PFAM protein family HMMPF01812 InterPro: 5-formyltetrahydrofolate cyclo-ligase; Family membership; 5-formyltetrahydrofolate cyclo-ligase 2948137 4213387 ABO_2604 Alcanivorax borkumensis SK2 5-formyltetrahydrofolate cyclo-ligase YP_694324.1 2947556 D 393595 CDS YP_694325.1 110835466 4211349 complement(2948604..2950121) 1 NC_008260.1 (threonine dehydratase biosynthetic, threonine deaminase) identified by sequence similarity; identified by match to PFAM protein families HMMPF00291 and HMMPF00585; InterPro: Pyridoxal-5-phosphate-dependent enzymes beta family; High confidence in function and specificity; threonine dehydratase 2950121 ilvA 4211349 ilvA Alcanivorax borkumensis SK2 threonine dehydratase YP_694325.1 2948604 R 393595 CDS YP_694326.1 110835467 4212174 2950277..2950933 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00021 InterPro: Ribose 5-phosphate isomerase; High confidence in function and specificity; ribose 5-phosphate isomerase 2950933 rpiA 4212174 rpiA Alcanivorax borkumensis SK2 ribose 5-phosphate isomerase YP_694326.1 2950277 D 393595 CDS YP_694327.1 110835468 4213388 complement(2951167..2951694) 1 NC_008260.1 predicted by Glimmer/Critica; hypothetical protein 2951694 4213388 ABO_2607 Alcanivorax borkumensis SK2 hypothetical protein YP_694327.1 2951167 R 393595 CDS YP_694328.1 110835469 4213389 complement(2951796..2952755) 1 NC_008260.1 identified by sequence similarity; hypothetical protein 2952755 4213389 ABO_2608 Alcanivorax borkumensis SK2 hypothetical protein YP_694328.1 2951796 R 393595 CDS YP_694329.1 110835470 4213390 2952826..2953470 1 NC_008260.1 hypothetical protein 2953470 4213390 ABO_2609 Alcanivorax borkumensis SK2 hypothetical protein YP_694329.1 2952826 D 393595 CDS YP_694330.1 110835471 4213391 complement(2953471..2953797) 1 NC_008260.1 hypothetical protein 2953797 4213391 ABO_2610 Alcanivorax borkumensis SK2 hypothetical protein YP_694330.1 2953471 R 393595 CDS YP_694331.1 110835472 4213392 2953992..2954420 1 NC_008260.1 (conserved hypothetical protein) identified by sequencesimilarity; hypothetical protein 2954420 4213392 ABO_2611 Alcanivorax borkumensis SK2 hypothetical protein YP_694331.1 2953992 D 393595 CDS YP_694332.1 110835473 4211869 complement(2954511..2955575) 1 NC_008260.1 (fructose-1,6-bisphosphate aldolase) identified by sequence similarity InterPro: Fructose-bisphosphate aldolase class-II; High confidence in function and specificity; fructose-1,6-bisphosphate aldolase 2955575 fda 4211869 fda Alcanivorax borkumensis SK2 fructose-1,6-bisphosphate aldolase YP_694332.1 2954511 R 393595 CDS YP_694333.1 110835474 4211326 complement(2955712..2956875) 1 NC_008260.1 Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 2956875 pgk 4211326 pgk Alcanivorax borkumensis SK2 phosphoglycerate kinase YP_694333.1 2955712 R 393595 CDS YP_694334.1 110835475 4211682 complement(2956939..2957973) 1 NC_008260.1 identified by sequence similarity; InterPro: Glyceraldehyde 3-phosphate dehydrogenase; High confidence in function and specificity; glyceraldehyde 3-phosphate dehydrogenase 2957973 gap 4211682 gap Alcanivorax borkumensis SK2 glyceraldehyde 3-phosphate dehydrogenase YP_694334.1 2956939 R 393595 CDS YP_694335.1 110835476 4211944 complement(2958029..2960029) 1 NC_008260.1 identified by sequence similarity InterPro: Transketolase; Family membership; transketolase 2960029 tktA 4211944 tktA Alcanivorax borkumensis SK2 transketolase YP_694335.1 2958029 R 393595 CDS YP_694336.1 110835477 4212533 2960237..2961211 1 NC_008260.1 transcriptional regulator ArsR family identified by match to PFAM protein family HMMPF01022 InterPro: SAM (and some other nucleotide) binding motif; Family membership; ArsR family transcriptional regulator 2961211 4212533 ABO_2616 Alcanivorax borkumensis SK2 ArsR family transcriptional regulator YP_694336.1 2960237 D 393595 CDS YP_694337.1 110835478 4211504 2961291..2962439 1 NC_008260.1 catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 2962439 metK 4211504 metK Alcanivorax borkumensis SK2 S-adenosylmethionine synthetase YP_694337.1 2961291 D 393595 CDS YP_694338.1 110835479 4211288 2962561..2963949 1 NC_008260.1 catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 2963949 ahcy 4211288 ahcy Alcanivorax borkumensis SK2 S-adenosyl-L-homocysteine hydrolase YP_694338.1 2962561 D 393595 CDS YP_694339.1 110835480 4211502 2964020..2964847 1 NC_008260.1 (5,10-methylenetetrahydrofolate reductase) identified by sequence similarity; identified by match to PFAM protein family HMMPF02219 and TIGRFAM protein family HMMTIGR00676; InterPro: Methylenetetrahydrofolate reductase; High confidence in function and specificity; deleted EC_number 1.7.99.5; 5,10-methylenetetrahydrofolate reductase 2964847 metF 4211502 metF Alcanivorax borkumensis SK2 5,10-methylenetetrahydrofolate reductase YP_694339.1 2964020 D 393595 CDS YP_694340.1 110835481 4212534 2965181..2965648 1 NC_008260.1 hypothetical protein 2965648 4212534 ABO_2620 Alcanivorax borkumensis SK2 hypothetical protein YP_694340.1 2965181 D 393595 CDS YP_694341.1 110835482 4211153 2965863..2967356 1 NC_008260.1 (pyruvate kinase) identified by sequencesimilarity; InterPro: Pyruvate kinase family; High confidence in function and specificity; pyruvate kinase 2967356 pykA 4211153 pykA Alcanivorax borkumensis SK2 pyruvate kinase YP_694341.1 2965863 D 393595 CDS YP_694342.1 110835483 4212535 2967873..2969027 1 NC_008260.1 hypothetical protein 2969027 4212535 ABO_2622 Alcanivorax borkumensis SK2 hypothetical protein YP_694342.1 2967873 D 393595 CDS YP_694343.1 110835484 4212536 complement(2969361..2970731) 1 NC_008260.1 (MATE efflux family protein, ) identified by match to PFAM protein family HMMPF04235 InterPro: Uncharacterized domain UPF0013; Family membership; MATE efflux family protein 2970731 4212536 ABO_2623 Alcanivorax borkumensis SK2 MATE efflux family protein YP_694343.1 2969361 R 393595 CDS YP_694344.1 110835485 4212537 complement(2970728..2971021) 1 NC_008260.1 (hypothetical protein) predicted by Glimmer/Critica; hypothetical protein 2971021 4212537 ABO_2624 Alcanivorax borkumensis SK2 hypothetical protein YP_694344.1 2970728 R 393595 CDS YP_694345.1 110835486 4212538 complement(2971107..2972201) 1 NC_008260.1 hypothetical protein 2972201 4212538 ABO_2625 Alcanivorax borkumensis SK2 hypothetical protein YP_694345.1 2971107 R 393595 CDS YP_694346.1 110835487 4212539 complement(2972581..2972865) 1 NC_008260.1 hypothetical protein 2972865 4212539 ABO_2626 Alcanivorax borkumensis SK2 hypothetical protein YP_694346.1 2972581 R 393595 CDS YP_694347.1 110835488 4212540 complement(2973202..2973951) 1 NC_008260.1 (hypothetical protein) predicted by Glimmer/Critica.; hypothetical protein 2973951 4212540 ABO_2627 Alcanivorax borkumensis SK2 hypothetical protein YP_694347.1 2973202 R 393595 CDS YP_694348.1 110835489 4212541 complement(2973948..2975069) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01594 InterPro: Domain of unknown function DUF20; Specificity unclear; hypothetical protein 2975069 4212541 ABO_2628 Alcanivorax borkumensis SK2 hypothetical protein YP_694348.1 2973948 R 393595 CDS YP_694349.1 110835490 4212542 complement(2975138..2976121) 1 NC_008260.1 predicted Ca2+/Na+ antiporter; Conserved hypothetical protein; Ca2+/Na+antiporter protein 2976121 4212542 ABO_2629 Alcanivorax borkumensis SK2 Ca2+/Na+antiporter protein YP_694349.1 2975138 R 393595 CDS YP_694350.1 110835491 4212543 complement(2976274..2979342) 1 NC_008260.1 (AcrB/C/D family cation/multidrug efflux pump; Transporter of the RND family of multidrug efflux pump) identified by match to PFAM protein family HMMPF03626 InterPro: Acriflavin resistance protein; Family membership; AcrB/AcrD/AcrF family transporter 2979342 4212543 ABO_2630 Alcanivorax borkumensis SK2 AcrB/AcrD/AcrF family transporter YP_694350.1 2976274 R 393595 CDS YP_694351.1 110835492 4211237 complement(2979343..2980416) 1 NC_008260.1 Multidrug resistance protein mdtA precursor; Conserved hypothetical protein; multidrug ABC transporter 2980416 mtdA 4211237 mtdA Alcanivorax borkumensis SK2 multidrug ABC transporter YP_694351.1 2979343 R 393595 CDS YP_694352.1 110835493 4212544 complement(2980695..2981432) 1 NC_008260.1 (peroxiredoxin family protein/glutaredoxin, ); identified by sequencesimilarity; InterPro: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Family membership; peroxiredoxin family protein/glutaredoxin 2981432 4212544 ABO_2632 Alcanivorax borkumensis SK2 peroxiredoxin family protein/glutaredoxin YP_694352.1 2980695 R 393595 CDS YP_694353.1 110835494 4211405 complement(2981572..2982072) 1 NC_008260.1 Conserved hypothetical protein; DNA-binding stress protein 2982072 dps 4211405 dps Alcanivorax borkumensis SK2 DNA-binding stress protein YP_694353.1 2981572 R 393595 CDS YP_694354.1 110835495 4212545 2982326..2983000 1 NC_008260.1 (membrane protein, hemolysin III homolog, ); Function unclear; hemolysin III-like protein 2983000 4212545 ABO_2634 Alcanivorax borkumensis SK2 hemolysin III-like protein YP_694354.1 2982326 D 393595 CDS YP_694355.1 110835496 4212546 2983098..2983415 1 NC_008260.1 (Transcriptional regulator, ArsR family, ) identified by match to PFAM protein family HMMPF01022 InterPro: Bacterial regulatory proteins ArsR family; High confidence in function and specificity; ArsR family transcriptional regulator 2983415 4212546 ABO_2635 Alcanivorax borkumensis SK2 ArsR family transcriptional regulator YP_694355.1 2983098 D 393595 CDS YP_694356.1 110835497 4212547 2983354..2983845 1 NC_008260.1 identify by sequnece similarity.; hypothetical protein 2983845 4212547 ABO_2636 Alcanivorax borkumensis SK2 hypothetical protein YP_694356.1 2983354 D 393595 CDS YP_694357.1 110835498 4212548 2983842..2984267 1 NC_008260.1 (hypothetical protein); hypothetical protein 2984267 4212548 ABO_2637 Alcanivorax borkumensis SK2 hypothetical protein YP_694357.1 2983842 D 393595 CDS YP_694358.1 110835499 4212784 complement(2984402..2984878) 1 NC_008260.1 glutathione peroxidase; High confidence in function and specificity; glutathione peroxidase 2984878 GSHPx 4212784 GSHPx Alcanivorax borkumensis SK2 glutathione peroxidase YP_694358.1 2984402 R 393595 CDS YP_694359.1 110835500 4212549 complement(2985025..2985699) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01382 InterPro: ThiJ/PfpI family; hypothetical protein 2985699 4212549 ABO_2639 Alcanivorax borkumensis SK2 hypothetical protein YP_694359.1 2985025 R 393595 CDS YP_694360.1 110835501 4212214 2985838..2987190 1 NC_008260.1 dGTPase family type 3 subfamily, presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2987190 dgt 4212214 dgt Alcanivorax borkumensis SK2 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_694360.1 2985838 D 393595 CDS YP_694361.1 110835502 4212550 complement(2987096..2987899) 1 NC_008260.1 identified by sequence similarity; hypothetical protein 2987899 4212550 ABO_2641 Alcanivorax borkumensis SK2 hypothetical protein YP_694361.1 2987096 R 393595 CDS YP_694362.1 110835503 4212551 2988402..2988806 1 NC_008260.1 (ABC efflux transporter permease/ATP-bindingprotein ) identified by sequence similarity; hypothetical protein 2988806 4212551 ABO_2642 Alcanivorax borkumensis SK2 hypothetical protein YP_694362.1 2988402 D 393595 CDS YP_694363.1 110835504 4212552 complement(2989168..2989866) 1 NC_008260.1 (hypothetical protein); hypothetical protein 2989866 4212552 ABO_2643 Alcanivorax borkumensis SK2 hypothetical protein YP_694363.1 2989168 R 393595 CDS YP_694364.1 110835505 4211893 complement(2989907..2991757) 1 NC_008260.1 (hypothetical protein); identified by sequence similarity.; hypothetical protein 2991757 4211893 ABO_2644 Alcanivorax borkumensis SK2 hypothetical protein YP_694364.1 2989907 R 393595 CDS YP_694365.1 110835506 4211894 complement(2991954..2992715) 1 NC_008260.1 (hydrolase, alpha/beta hydrolase fold family, ) identified by match to TIGR protein family HMMTIGR01738 InterPro: Esterase/lipase/thioesterase family active site; Family membership; alpha/beta hydrolase 2992715 4211894 ABO_2645 Alcanivorax borkumensis SK2 alpha/beta hydrolase YP_694365.1 2991954 R 393595 CDS YP_694366.1 110835507 4211895 2992813..2994009 1 NC_008260.1 hypothetical protein 2994009 4211895 ABO_2646 Alcanivorax borkumensis SK2 hypothetical protein YP_694366.1 2992813 D 393595 CDS YP_694367.1 110835508 4211896 complement(2993948..2994484) 1 NC_008260.1 Conserved hypothetical protein; MutT/nudix family protein 2994484 4211896 ABO_2647 Alcanivorax borkumensis SK2 MutT/nudix family protein YP_694367.1 2993948 R 393595 CDS YP_694368.1 110835509 4211897 complement(2994571..2995473) 1 NC_008260.1 identified by match to PFAM protein family HMMPF03372 shows similarity to an endonuclease/Exonuclease/phosphatase family protein in P. syringae. This large family of proteins includes magnesium dependent endonucleases and a large number of phosphatases involved in intracellular signalling.; hypothetical protein 2995473 4211897 ABO_2648 Alcanivorax borkumensis SK2 hypothetical protein YP_694368.1 2994571 R 393595 CDS YP_694369.1 110835510 4211406 complement(2995478..2996113) 1 NC_008260.1 identified by sequencesimilarity; InterPro: DSBA oxidoreductase; High confidence in function and specificity; DsbA family thiol:disulfide interchange protein 2996113 dsbA 4211406 dsbA Alcanivorax borkumensis SK2 DsbA family thiol:disulfide interchange protein YP_694369.1 2995478 R 393595 CDS YP_694370.1 110835511 4212962 complement(2996278..2996931) 1 NC_008260.1 (cytochrome c4) identified by sequencesimilarity; InterPro: Cytochrome c class I; High confidence in function and specificity; cytochrome c4 2996931 cc4 4212962 cc4 Alcanivorax borkumensis SK2 cytochrome c4 YP_694370.1 2996278 R 393595 CDS YP_694371.1 110835512 4211898 complement(2996955..2997248) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Cytochrome c class I; Specificity unclear; cytochrome c-type protein 2997248 4211898 ABO_2651 Alcanivorax borkumensis SK2 cytochrome c-type protein YP_694371.1 2996955 R 393595 CDS YP_694372.1 110835513 4213347 2997580..2998206 1 NC_008260.1 (engb) ; identify by sequence similarity; Hypothetical protein; GTP-binding protein 2998206 engb 4213347 engb Alcanivorax borkumensis SK2 GTP-binding protein YP_694372.1 2997580 D 393595 CDS YP_694373.1 110835514 4211598 complement(2998974..2999306) 1 NC_008260.1 subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit G 2999306 mnhG 4211598 mnhG Alcanivorax borkumensis SK2 monovalent cation/H+ antiporter subunit G YP_694373.1 2998974 R 393595 CDS YP_694374.1 110835515 4211597 complement(2999392..2999661) 1 NC_008260.1 (Multisubunit Na+/H+ antiporter, MnhF subunit, ) identified by sequence similarity; Family membership; multisubunit Na+/H+ antiporter subunit MnhF 2999661 mnhF 4211597 mnhF Alcanivorax borkumensis SK2 multisubunit Na+/H+ antiporter subunit MnhF YP_694374.1 2999392 R 393595 CDS YP_694375.1 110835516 4211596 complement(2999655..3000149) 1 NC_008260.1 subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; monovalent cation/H+ antiporter subunit E 3000149 mnhE 4211596 mnhE Alcanivorax borkumensis SK2 monovalent cation/H+ antiporter subunit E YP_694375.1 2999655 R 393595 CDS YP_694376.1 110835517 4211595 complement(3000146..3001627) 1 NC_008260.1 ( cation efflux system protein, ); identifiedby sequence similarity; InterPro: NADH-Ubiquinone/plastoquinone (complex I) various chains; High confidence in function and specificity; multisubunit Na+/H+ antiporter, MnhD subunit 3001627 mnhD 4211595 mnhD Alcanivorax borkumensis SK2 multisubunit Na+/H+ antiporter, MnhD subunit YP_694376.1 3000146 R 393595 CDS YP_694377.1 110835518 4211594 complement(3001624..3001962) 1 NC_008260.1 subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; monovalent cation/H+ antiporter subunit C 3001962 mnhC 4211594 mnhC Alcanivorax borkumensis SK2 monovalent cation/H+ antiporter subunit C YP_694377.1 3001624 R 393595 CDS YP_694378.1 110835519 4211593 complement(3001962..3004760) 1 NC_008260.1 subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; monovalent cation/H+ antiporter subunit A 3004760 mnhAB 4211593 mnhAB Alcanivorax borkumensis SK2 monovalent cation/H+ antiporter subunit A YP_694378.1 3001962 R 393595 CDS YP_694379.1 110835520 4212268 3005056..3007926 1 NC_008260.1 identified by sequencesimilarity; InterPro: Replicative DNA polymerase; High confidence in function and specificity; DNA polymerase I 3007926 polA 4212268 polA Alcanivorax borkumensis SK2 DNA polymerase I YP_694379.1 3005056 D 393595 CDS YP_694380.1 110835521 4211899 complement(3008062..3008349) 1 NC_008260.1 Hypothetical protein; hypothetical protein 3008349 4211899 ABO_2660 Alcanivorax borkumensis SK2 hypothetical protein YP_694380.1 3008062 R 393595 CDS YP_694381.1 110835522 4211900 3008743..3009498 1 NC_008260.1 (outer membrane ferric siderophore receptor) identified by sequence similarity; InterPro: OmpA-like transmembrane domain; hypothetical protein 3009498 4211900 ABO_2661 Alcanivorax borkumensis SK2 hypothetical protein YP_694381.1 3008743 D 393595 CDS YP_694382.1 110835523 4211901 complement(3009704..3010843) 1 NC_008260.1 Family membership; acyl-CoA dehydrogenase 3010843 4211901 ABO_2662 Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_694382.1 3009704 R 393595 CDS YP_694383.1 110835524 4211902 complement(3011168..3011617) 1 NC_008260.1 hypothetical protein 3011617 4211902 ABO_2663 Alcanivorax borkumensis SK2 hypothetical protein YP_694383.1 3011168 R 393595 CDS YP_694384.1 110835525 4211903 complement(3011696..3012553) 1 NC_008260.1 shows some similarity (ca. 30 ) to secreted lipases.; hypothetical protein 3012553 4211903 ABO_2664 Alcanivorax borkumensis SK2 hypothetical protein YP_694384.1 3011696 R 393595 CDS YP_694385.1 110835526 4211252 3012622..3013674 1 NC_008260.1 identified by sequence similarity; InterPro: HMG-CoA Lyase-like family; High confidence in function and specificity; hydroxymethylglutaryl-CoA lyase 3013674 mvaB 4211252 mvaB Alcanivorax borkumensis SK2 hydroxymethylglutaryl-CoA lyase YP_694385.1 3012622 D 393595 CDS YP_694386.1 110835527 4211904 complement(3013845..3015308) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Domain of unknown function DUF9; Family membership; GAF/PAS/GGDEF domain-containing protein 3015308 4211904 ABO_2666 Alcanivorax borkumensis SK2 GAF/PAS/GGDEF domain-containing protein YP_694386.1 3013845 R 393595 CDS YP_694387.1 110835528 4211905 complement(3015522..3016070) 1 NC_008260.1 (YGGT family protein) identified by match to PFAM protein family HMMPF04020 InterPro: YGGT family; Family membership; hypothetical protein 3016070 4211905 ABO_2667 Alcanivorax borkumensis SK2 hypothetical protein YP_694387.1 3015522 R 393595 CDS YP_694388.1 110835529 4211221 complement(3016291..3017100) 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein family HMMPF01089 and TIGRFAM protein family HMMTIGR00112 InterPro: Delta 1-pyrroline-5-carboxylate reductase; High confidence in function and specificity; pyrroline-5-carboxylate reductase 3017100 proC 4211221 proC Alcanivorax borkumensis SK2 pyrroline-5-carboxylate reductase YP_694388.1 3016291 R 393595 CDS YP_694389.1 110835530 4211906 complement(3017121..3017813) 1 NC_008260.1 identified by sequence similarity; InterPro: hypothetical upf0001 protein in pilt-proc intergenic region; hypothetical protein 3017813 4211906 ABO_2669 Alcanivorax borkumensis SK2 hypothetical protein YP_694389.1 3017121 R 393595 CDS YP_694390.1 110835531 4211385 3017946..3018980 1 NC_008260.1 identified by sequence similarity InterPro: Bacterial type II secretion system protein E; Function unclear; type IV pili twitching motility protein PilT 3018980 pilT 4211385 pilT Alcanivorax borkumensis SK2 type IV pili twitching motility protein PilT YP_694390.1 3017946 D 393595 CDS YP_694391.1 110835532 4211386 3019041..3020162 1 NC_008260.1 identified by sequence similarity InterPro: Bacterial type II secretion system protein E; Function unclear; type IV pili twitching motility protein PilT 3020162 pilU 4211386 pilU Alcanivorax borkumensis SK2 type IV pili twitching motility protein PilT YP_694391.1 3019041 D 393595 CDS YP_694392.1 110835533 4211907 complement(3020326..3020619) 1 NC_008260.1 hypothetical protein 3020619 4211907 ABO_2672 Alcanivorax borkumensis SK2 hypothetical protein YP_694392.1 3020326 R 393595 CDS YP_694393.1 110835534 4211908 3020880..3021467 1 NC_008260.1 hypothetical protein 3021467 4211908 ABO_2673 Alcanivorax borkumensis SK2 hypothetical protein YP_694393.1 3020880 D 393595 CDS YP_694394.1 110835535 4211909 3021609..3022148 1 NC_008260.1 hypothetical protein 3022148 4211909 ABO_2674 Alcanivorax borkumensis SK2 hypothetical protein YP_694394.1 3021609 D 393595 CDS YP_694395.1 110835536 4211910 3022255..3022818 1 NC_008260.1 hypothetical protein 3022818 4211910 ABO_2675 Alcanivorax borkumensis SK2 hypothetical protein YP_694395.1 3022255 D 393595 CDS YP_694396.1 110835537 4211911 3022858..3024042 1 NC_008260.1 hypothetical protein 3024042 4211911 ABO_2676 Alcanivorax borkumensis SK2 hypothetical protein YP_694396.1 3022858 D 393595 CDS YP_694397.1 110835538 4213833 complement(3024132..3024944) 1 NC_008260.1 arsenical resistance protein ArsH; (arsH; NADPH-dependent FMN reductase) (conserved hypothetical protein); identified by sequencesimilarity; arsenical resistance protein ArsH 3024944 arsH 4213833 arsH Alcanivorax borkumensis SK2 arsenical resistance protein ArsH YP_694397.1 3024132 R 393595 CDS YP_694398.1 110835539 4211277 complement(3024970..3025989) 1 NC_008260.1 InterPro: Sodium bile acid symporter; Conserved hypothetical protein; arsenical pump membrane protein ACR3 3025989 acr3 4211277 acr3 Alcanivorax borkumensis SK2 arsenical pump membrane protein ACR3 YP_694398.1 3024970 R 393595 CDS YP_694399.1 110835540 4213832 complement(3025989..3026483) 1 NC_008260.1 identified by sequence similarity; InterPro: Low molecular weight phosphotyrosine protein phosphatase; High confidence in function and specificity; arsenate reductase 3026483 arsC-3 4213832 arsC-3 Alcanivorax borkumensis SK2 arsenate reductase YP_694399.1 3025989 R 393595 CDS YP_694400.1 110835541 4213835 complement(3026500..3026817) 1 NC_008260.1 identified by sequence similarity; InterPro: Bacterial regulatory proteins ArsR family; Specificity unclear; arsenic resistance transcriptional regulator 3026817 arsR-1 4213835 arsR-1 Alcanivorax borkumensis SK2 arsenic resistance transcriptional regulator YP_694400.1 3026500 R 393595 CDS YP_694401.1 110835542 4211614 complement(3027025..3027738) 1 NC_008260.1 (phosphate transport system regulatory proteinPhoU) identified by sequence similarity; High confidence in function and specificity; phosphate transport system regulatory protein 3027738 phoU 4211614 phoU Alcanivorax borkumensis SK2 phosphate transport system regulatory protein YP_694401.1 3027025 R 393595 CDS YP_694402.1 110835543 4211229 complement(3027763..3028656) 1 NC_008260.1 ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 3028656 pstB 4211229 pstB Alcanivorax borkumensis SK2 phosphate transporter ATP-binding protein YP_694402.1 3027763 R 393595 CDS YP_694403.1 110835544 4211228 complement(3028682..3029950) 1 NC_008260.1 identified by sequence similarity; InterPro: Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity; phosphate ABC transporter permease 3029950 pstA 4211228 pstA Alcanivorax borkumensis SK2 phosphate ABC transporter permease YP_694403.1 3028682 R 393595 CDS YP_694404.1 110835545 4211230 complement(3029966..3031354) 1 NC_008260.1 identified by sequence similarity; InterPro: Binding-protein-dependent transport systems inner membrane component; High confidence in function and specificity; phosphate ABC transporter permease 3031354 pstC 4211230 pstC Alcanivorax borkumensis SK2 phosphate ABC transporter permease YP_694404.1 3029966 R 393595 CDS YP_694405.1 110835546 4211231 complement(3031495..3032541) 1 NC_008260.1 (phosphate ABC transporter periplasmicphosphate-binding protein) identified by sequencesimilarity; InterPro: Phosphate-binding protein; High confidence in function and specificity; phosphate ABC transporter substrate-binding protein 3032541 pstS 4211231 pstS Alcanivorax borkumensis SK2 phosphate ABC transporter substrate-binding protein YP_694405.1 3031495 R 393595 CDS YP_694406.1 110835547 4212658 3032794..3033354 1 NC_008260.1 TRAP-type sodium-dependent glutamate permease integral membrane protein (small) Pfam: Tripartite ATP-independent periplasmic transporters, DctQ component TMHMM: reporting 4 transmembrane helices; High confidence in function and specificity; TRAP-type transport system small permease 3033354 gtrA 4212658 gtrA Alcanivorax borkumensis SK2 TRAP-type transport system small permease YP_694406.1 3032794 D 393595 CDS YP_694407.1 110835548 4212659 3033354..3034724 1 NC_008260.1 TRAP-type sodium-dependent glutamate permease integral membrane protein (large). identified by sequence similarity; SignalP: reporting signal peptide TMHMM: predicting 12 transmembrane helices; High confidence in function and specificity; TRAP-type transport system large permease 3034724 gtrB 4212659 gtrB Alcanivorax borkumensis SK2 TRAP-type transport system large permease YP_694407.1 3033354 D 393595 CDS YP_694408.1 110835549 4212494 3034708..3035124 1 NC_008260.1 (long-chain acyl-CoA thioester hydrolase family protein, ) identified by match to PFAM protein family HMMPF01662 InterPro: long-chain acyl-CoA thioester hydrolase; High confidence in function and specificity; acyl-CoA thioester hydrolase 3035124 4212494 ABO_2688 Alcanivorax borkumensis SK2 acyl-CoA thioester hydrolase YP_694408.1 3034708 D 393595 CDS YP_694409.1 110835550 4212495 complement(3035189..3036238) 1 NC_008260.1 TRAP-type mannitol/chloroaromatic compound transport system, periplasmic component. Pfam: Extracellular solute-binding protein, family 7. This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes biochemically well-characterised DctP, periplasmic dicarboxylate (malate, fumarate, succinate) binding receptor.; High confidence in function and specificity; TRAP-type transports system extracellular solute binding protein 3036238 4212495 ABO_2689 Alcanivorax borkumensis SK2 TRAP-type transports system extracellular solute binding protein YP_694409.1 3035189 R 393595 CDS YP_694410.1 110835551 4211956 complement(3036477..3038639) 1 NC_008260.1 identified by match to PFAM protein family HMMPF03711 InterPro: UvrD/REP helicase; High confidence in function and specificity; DNA helicase II 3038639 uvrD 4211956 uvrD Alcanivorax borkumensis SK2 DNA helicase II YP_694410.1 3036477 R 393595 CDS YP_694411.1 110835552 4212496 3038814..3041693 1 NC_008260.1 identified by match to PFAM protein family HMMPF03466 InterPro: Domain of unknown function 2; Function unclear; sensory box protein 3041693 4212496 ABO_2691 Alcanivorax borkumensis SK2 sensory box protein YP_694411.1 3038814 D 393595 CDS YP_694412.1 110835553 4212497 complement(3041816..3042802) 1 NC_008260.1 hypothetical protein 3042802 4212497 ABO_2692 Alcanivorax borkumensis SK2 hypothetical protein YP_694412.1 3041816 R 393595 CDS YP_694413.1 110835554 4212498 3042890..3043732 1 NC_008260.1 hypothetical protein 3043732 4212498 ABO_2693 Alcanivorax borkumensis SK2 hypothetical protein YP_694413.1 3042890 D 393595 CDS YP_694414.1 110835555 4212499 complement(3043896..3046190) 1 NC_008260.1 identified by sequencesimilarity; InterPro: Uncharacterized protein family UPF0003; hypothetical protein 3046190 4212499 ABO_2694 Alcanivorax borkumensis SK2 hypothetical protein YP_694414.1 3043896 R 393595 CDS YP_694415.1 110835556 4212500 3046665..3046877 1 NC_008260.1 (hypothetical protein); hypothetical protein 3046877 4212500 ABO_2695 Alcanivorax borkumensis SK2 hypothetical protein YP_694415.1 3046665 D 393595 CDS YP_694416.1 110835557 4212501 3046877..3048622 1 NC_008260.1 (oxidoreductase, ) identified by sequence similarity; InterPro: Short-chain dehydrogenase/reductase (SDR) superfamily; High confidence in function and specificity; short chain dehydrogenase 3048622 4212501 ABO_2696 Alcanivorax borkumensis SK2 short chain dehydrogenase YP_694416.1 3046877 D 393595 CDS YP_694417.1 110835558 4212502 3048718..3049560 1 NC_008260.1 hypothetical protein 3049560 4212502 ABO_2697 Alcanivorax borkumensis SK2 hypothetical protein YP_694417.1 3048718 D 393595 CDS YP_694418.1 110835559 4212503 complement(3049662..3050105) 1 NC_008260.1 hypothetical protein 3050105 4212503 ABO_2698 Alcanivorax borkumensis SK2 hypothetical protein YP_694418.1 3049662 R 393595 CDS YP_694419.1 110835560 4212504 complement(3050172..3051575) 1 NC_008260.1 Phosphatidylserine/phosphatidylglycerophosphate/ cardiolipin synthases and related enzymes identified by sequence similarity; Family membership; phospholipase D/transphosphatidylase 3051575 4212504 ABO_2699 Alcanivorax borkumensis SK2 phospholipase D/transphosphatidylase YP_694419.1 3050172 R 393595 CDS YP_694420.1 110835561 4212505 3051822..3053708 1 NC_008260.1 identified by match to PFAM protein family HMMPF04076; hypothetical protein 3053708 4212505 ABO_2700 Alcanivorax borkumensis SK2 hypothetical protein YP_694420.1 3051822 D 393595 CDS YP_694421.1 110835562 4212355 3053775..3055754 1 NC_008260.1 (cpdB) (2',3'-cyclic-nucleotide 2'-phosphodiesterase precursor (5`-nucleotidase)) identified by sequence similarity; InterPro: 5-Nucleotidase; Family membership; 2,3-cyclic-nucleotide 2'phosphodiesterase 3055754 ushA 4212355 ushA Alcanivorax borkumensis SK2 2,3-cyclic-nucleotide 2'phosphodiesterase YP_694421.1 3053775 D 393595 CDS YP_694422.1 110835563 4211546 complement(3055822..3056673) 1 NC_008260.1 catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 3056673 ligA 4211546 ligA Alcanivorax borkumensis SK2 DNA ligase YP_694422.1 3055822 R 393595 CDS YP_694423.1 110835564 4211373 3056820..3057881 1 NC_008260.1 identified by match to PFAM protein family HMMPF01625 InterPro: Peptide methionine sulfoxide reductase; High confidence in function and specificity; peptide methionine sulfoxide reductase 3057881 msrA 4211373 msrA Alcanivorax borkumensis SK2 peptide methionine sulfoxide reductase YP_694423.1 3056820 D 393595 CDS YP_694424.1 110835565 4212506 complement(3057927..3058859) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01810; hypothetical protein 3058859 4212506 ABO_2704 Alcanivorax borkumensis SK2 hypothetical protein YP_694424.1 3057927 R 393595 CDS YP_694425.1 110835566 4212507 complement(3058906..3060252) 1 NC_008260.1 (membrane protein ) identified by sequence similarity; na(+)/h(+) antiporter (sodium/proton antiporter) (sodium/hydrogen antiporter); Hypothetical protein; Na+/H+ antiporter 3060252 4212507 ABO_2705 Alcanivorax borkumensis SK2 Na+/H+ antiporter YP_694425.1 3058906 R 393595 CDS YP_694426.1 110835567 4213403 complement(3060396..3063014) 1 NC_008260.1 (alkB1GHJ positive regulator) identified by sequence similarity; InterPro: Bacterial regulatory protein LuxR family. Member of the MalT subfamily o f the LuxR family.; High confidence in function and specificity; alkB1GHJ regulator 3063014 alkS 4213403 alkS Alcanivorax borkumensis SK2 alkB1GHJ regulator YP_694426.1 3060396 R 393595 CDS YP_694427.1 110835568 4213396 3063242..3064456 1 NC_008260.1 (alkane 1-monooxygenase, integral membrane non-heme iron monooxygenase); High confidence in function and specificity; alkane 1-monooxygenase 3064456 alkB1 4213396 alkB1 Alcanivorax borkumensis SK2 alkane 1-monooxygenase YP_694427.1 3063242 D 393595 CDS YP_694428.1 110835569 4213398 3064575..3065099 1 NC_008260.1 alkG rubredoxin identified by sequencesimilarity InterPro: Rubredoxin Rubredoxin-type Fe(Cys)4 protein involved in the hydrocarbon hydroxylating system, which transfers electrons from nadh to rubredoxin reductase and then through rubredoxin to alkane 1 monooxygenase; High confidence in function and specificity; rubredoxin 3065099 alkG 4213398 alkG Alcanivorax borkumensis SK2 rubredoxin YP_694428.1 3064575 D 393595 CDS YP_694429.1 110835570 4213399 3065151..3066605 1 NC_008260.1 (aldehyde dehydrogenase family protein) identified by match to TIGR protein family HMMTIGR01722 InterPro: Aldehyde dehydrogenase family; High confidence in function and specificity; aldehyde dehydrogenase 3066605 alkH 4213399 alkH Alcanivorax borkumensis SK2 aldehyde dehydrogenase YP_694429.1 3065151 D 393595 CDS YP_694430.1 110835571 4213400 3066633..3068240 1 NC_008260.1 identified by sequence similarity; identified by match to PFAM protein families HMMPF00732 and HMMPF05199; InterPro: Glucose-methanol-choline (GMC) oxidoreductase; High confidence in function and specificity; alcohol dehydrogenase 3068240 alkJ 4213400 alkJ Alcanivorax borkumensis SK2 alcohol dehydrogenase YP_694430.1 3066633 D 393595 CDS YP_694431.1 110835572 4212508 complement(3068687..3069085) 1 NC_008260.1 hypothetical protein 3069085 4212508 ABO_2711 Alcanivorax borkumensis SK2 hypothetical protein YP_694431.1 3068687 R 393595 CDS YP_694432.1 110835573 4212509 complement(3069373..3069945) 1 NC_008260.1 (ribF) (riboflavin biosynthesis protein RibF) identified by sequence similarity; Hypothetical protein; hypothetical protein 3069945 4212509 ABO_2712 Alcanivorax borkumensis SK2 hypothetical protein YP_694432.1 3069373 R 393595 CDS YP_694433.1 110835574 4212510 complement(3070013..3070954) 1 NC_008260.1 hypothetical protein 3070954 4212510 ABO_2713 Alcanivorax borkumensis SK2 hypothetical protein YP_694433.1 3070013 R 393595 CDS YP_694434.1 110835575 4212511 complement(3071899..3072657) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00005; hypothetical protein 3072657 4212511 ABO_2714 Alcanivorax borkumensis SK2 hypothetical protein YP_694434.1 3071899 R 393595 CDS YP_694435.1 110835576 4211737 complement(3073181..3073828) 1 NC_008260.1 identified by sequence similarity.; High confidence in function and specificity; urease accessory protein UreG 3073828 ureG 4211737 ureG Alcanivorax borkumensis SK2 urease accessory protein UreG YP_694435.1 3073181 R 393595 CDS YP_694436.1 110835577 4211736 complement(3073969..3074658) 1 NC_008260.1 identified by sequence similarity; InterPro: UreF; High confidence in function and specificity; urease accessory protein UreF 3074658 ureF 4211736 ureF Alcanivorax borkumensis SK2 urease accessory protein UreF YP_694436.1 3073969 R 393595 CDS YP_694437.1 110835578 4211951 complement(3074666..3075286) 1 NC_008260.1 identified by sequence similarity; Family membership; urease accessory protein UreJ 3075286 ureJ 4211951 ureJ Alcanivorax borkumensis SK2 urease accessory protein UreJ YP_694437.1 3074666 R 393595 CDS YP_694438.1 110835579 4211735 complement(3075296..3075826) 1 NC_008260.1 identified by sequence similarity; InterPro: UreE urease accessory protein; High confidence in function and specificity; urease accessory protein UreE 3075826 ureE 4211735 ureE Alcanivorax borkumensis SK2 urease accessory protein UreE YP_694438.1 3075296 R 393595 CDS YP_694439.1 110835580 4211733 complement(3075848..3077551) 1 NC_008260.1 ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha 3077551 ureC 4211733 ureC Alcanivorax borkumensis SK2 urease subunit alpha YP_694439.1 3075848 R 393595 CDS YP_694440.1 110835581 4211732 complement(3077685..3077990) 1 NC_008260.1 (urease beta subunit, urea amidohydrolase) identified by sequence similarity; identified by match to PFAM protein family HMMPF00699 and TIGRFAM protein family HMMTIGR00192 InterPro: Urease beta subunit; High confidence in function and specificity; urease subunit beta 3077990 ureB 4211732 ureB Alcanivorax borkumensis SK2 urease subunit beta YP_694440.1 3077685 R 393595 CDS YP_694441.1 110835582 4211731 complement(3078016..3078318) 1 NC_008260.1 (urease gamma subunit, urea amidohydrolase) identified by sequence similarity; identified by match to PFAM protein family HMMPF00547 and TIGRFAM protein family HMMTIGR00193 InterPro: Urease gamma subunit; High confidence in function and specificity; urease subunit gamma 3078318 ureA 4211731 ureA Alcanivorax borkumensis SK2 urease subunit gamma YP_694441.1 3078016 R 393595 CDS YP_694442.1 110835583 4211734 complement(3078351..3079235) 1 NC_008260.1 identified by sequence similarity; InterPro: UreD urease accessory protein; High confidence in function and specificity; urease accessory protein UreD 3079235 ureD 4211734 ureD Alcanivorax borkumensis SK2 urease accessory protein UreD YP_694442.1 3078351 R 393595 CDS YP_694443.1 110835584 4211181 complement(3079503..3081332) 1 NC_008260.1 (glucosamine--fructose-6-phosphateaminotransferase isomerizing) identified by match to TIGR protein family HMMTIGR01135 InterPro: Glutamine amidotransferase class-II; High confidence in function and specificity; glucosamine 6-phosphate synthase 3081332 glmS 4211181 glmS Alcanivorax borkumensis SK2 glucosamine 6-phosphate synthase YP_694443.1 3079503 R 393595 CDS YP_694444.1 110835585 4211182 complement(3081345..3082703) 1 NC_008260.1 Bifunctional glmU protein [Includes: UDP-N-acetylglucosaminepyrophosphorylase (EC 2.7.7.23) (N-acetylglucosamine-1-phosphateuridyltransferase); Glucosamine-1-phosphate N-acetyltransferase(EC 2.3.1.57)]. (UDP-N-acetylglucosamine pyrophosphorylase) identified by match to TIGR protein family HMMTIGR01173 InterPro: ADP-glucose pyrophosphorylase; High confidence in function and specificity; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase / glucosamine-1-phosphate N-acetyltransferase 3082703 glmU 4211182 glmU Alcanivorax borkumensis SK2 bifunctional N-acetylglucosamine-1-phosphate uridyltransferase / glucosamine-1-phosphate N-acetyltransferase YP_694444.1 3081345 R 393595 CDS YP_694445.1 110835586 4213844 complement(3082861..3083280) 1 NC_008260.1 (ATP synthase F1 epsilon subunit) identified by sequencesimilarity; InterPro: ATP synthase Delta/Epsilon chain catalytic reaction: atp + h(2)o + h(+)(in) = adp + phosphate + h(+)(out); High confidence in function and specificity; ATP synthase subunit epsilon 3083280 atpC 4213844 atpC Alcanivorax borkumensis SK2 ATP synthase subunit epsilon YP_694445.1 3082861 R 393595 CDS YP_694446.1 110835587 4213845 complement(3083303..3084685) 1 NC_008260.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; ATP synthase F0F1 subunit beta 3084685 atpD 4213845 atpD Alcanivorax borkumensis SK2 ATP synthase F0F1 subunit beta YP_694446.1 3083303 R 393595 CDS YP_694447.1 110835588 4212126 complement(3084735..3085595) 1 NC_008260.1 (ATP synthase F1 gamma subunit) identified by match to PFAM protein family HMMPF00231 InterPro: ATP synthase gamma subunit; High confidence in function and specificity; ATP synthase subunit gamma 3085595 atpG 4212126 atpG Alcanivorax borkumensis SK2 ATP synthase subunit gamma YP_694447.1 3084735 R 393595 CDS YP_694448.1 110835589 4213842 complement(3085619..3087163) 1 NC_008260.1 (ATP synthase F1 alpha subunit) identified by sequence similarity; InterPro: ATP synthase alpha and beta subunit central region; High confidence in function and specificity; ATP synthase subunit alpha 3087163 atpA 4213842 atpA Alcanivorax borkumensis SK2 ATP synthase subunit alpha YP_694448.1 3085619 R 393595 CDS YP_694449.1 110835590 4212127 complement(3087180..3087716) 1 NC_008260.1 (ATP synthase F1 delta subunit) identified by sequence similarity; Function unclear; ATP synthase subunit delta 3087716 atpH 4212127 atpH Alcanivorax borkumensis SK2 ATP synthase subunit delta YP_694449.1 3087180 R 393595 CDS YP_694450.1 110835591 4213847 complement(3087732..3088202) 1 NC_008260.1 identified by sequencesimilarity; InterPro: ATP synthase B/B CF(0); Function unclear; ATP synthase F0 subunit B 3088202 atpF 4213847 atpF Alcanivorax borkumensis SK2 ATP synthase F0 subunit B YP_694450.1 3087732 R 393595 CDS YP_694451.1 110835592 4213846 complement(3088268..3088489) 1 NC_008260.1 (ATP synthase F0 C subunit) identified by match to TIGR protein family HMMTIGR01260 InterPro: ATP synthase subunit C; High confidence in function and specificity; ATP synthase Fo subunit C 3088489 atpE 4213846 atpE Alcanivorax borkumensis SK2 ATP synthase Fo subunit C YP_694451.1 3088268 R 393595 CDS YP_694452.1 110835593 4213843 complement(3088561..3089469) 1 NC_008260.1 Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; ATP synthase F0F1 subunit A 3089469 atpB 4213843 atpB Alcanivorax borkumensis SK2 ATP synthase F0F1 subunit A YP_694452.1 3088561 R 393595 CDS YP_694453.1 110835594 4212128 complement(3089503..3089880) 1 NC_008260.1 (ATP synthase I subunit) identified by sequence similarity; Family membership; ATP synthase subunit I 3089880 atpI 4212128 atpI Alcanivorax borkumensis SK2 ATP synthase subunit I YP_694453.1 3089503 R 393595 CDS YP_694454.1 110835595 4212439 complement(3090312..3091298) 1 NC_008260.1 identified by match to PFAM protein family HMMPF02195 InterPro: ParB-like partition protein; High confidence in function and specificity; chromosome partitioning protein ParB 3091298 parB 4212439 parB Alcanivorax borkumensis SK2 chromosome partitioning protein ParB YP_694454.1 3090312 R 393595 CDS YP_694455.1 110835596 4212438 complement(3091323..3092120) 1 NC_008260.1 (ParA family ATPase) identified by sequencesimilarity; InterPro: ParA family ATPase; Family membership; ParA family ATPase 3092120 parA 4212438 parA Alcanivorax borkumensis SK2 ParA family ATPase YP_694455.1 3091323 R 393595 CDS YP_694456.1 110835597 4211698 complement(3092184..3092798) 1 NC_008260.1 (glucose-inhibited division protein B; Methyltransferase gidB) identified by match to TIGR protein family HMMTIGR00138; High confidence in function and specificity; methyltransferase GidB 3092798 gidB 4211698 gidB Alcanivorax borkumensis SK2 methyltransferase GidB YP_694456.1 3092184 R 393595 CDS YP_694457.1 110835598 4211697 complement(3092795..3094690) 1 NC_008260.1 GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 3094690 gidA 4211697 gidA Alcanivorax borkumensis SK2 tRNA uridine 5-carboxymethylaminomethyl modification protein GidA YP_694457.1 3092795 R 393595 CDS YP_694458.1 110835599 4212512 3095020..3096720 1 NC_008260.1 (sodium/hydrogen exchanger family protein) identified by match to PFAM protein family HMMPF03471 InterPro: Na+/H+ exchanger; Family membership; sodium/hydrogen exchanger family protein 3096720 4212512 ABO_2738 Alcanivorax borkumensis SK2 sodium/hydrogen exchanger family protein YP_694458.1 3095020 D 393595 CDS YP_694459.1 110835600 4212513 3096995..3098809 1 NC_008260.1 (acyl-CoA dehydrogenase family protein; ) identified by match to PFAM protein family HMMPF00441; Family membership; acyl-CoA dehydrogenase 3098809 4212513 ABO_2739 Alcanivorax borkumensis SK2 acyl-CoA dehydrogenase YP_694459.1 3096995 D 393595 CDS YP_694460.1 110835601 4212223 3099011..3100312 1 NC_008260.1 hypothetical protein 3100312 4212223 ABO_2740 Alcanivorax borkumensis SK2 hypothetical protein YP_694460.1 3099011 D 393595 CDS YP_694461.1 110835602 4211808 complement(3100671..3102269) 1 NC_008260.1 Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase 3102269 aceA 4211808 aceA Alcanivorax borkumensis SK2 isocitrate lyase YP_694461.1 3100671 R 393595 CDS YP_694462.1 110835603 4213840 3102693..3104066 1 NC_008260.1 acyltransferase, homologous to ABO_1804, AtfA2 and to the ACIAD0832, wax ester synthase/ diacylglycerol acyltransferase of Acinetobacter sp. AP1; High confidence in function and specificity; acyltransferase 3104066 atfA1 4213840 atfA1 Alcanivorax borkumensis SK2 acyltransferase YP_694462.1 3102693 D 393595 CDS YP_694463.1 110835604 4212224 3104123..3105019 1 NC_008260.1 identified by sequence similarity; InterPro: conserved hypothetical protein (UPF0010_DUF); hypothetical protein 3105019 4212224 ABO_2743 Alcanivorax borkumensis SK2 hypothetical protein YP_694463.1 3104123 D 393595 CDS YP_694464.1 110835605 4213651 3105207..3105410 1 NC_008260.1 cold-shock protein CspG identified by sequence similarity; InterPro: Cold-shock DNA-binding domain; Family membership; cold-shock domain-contain protein 3105410 cspG 4213651 cspG Alcanivorax borkumensis SK2 cold-shock domain-contain protein YP_694464.1 3105207 D 393595 CDS YP_694465.1 110835606 4212225 complement(3105610..3106275) 1 NC_008260.1 identified by match to PFAM protein family HMMPF01863 InterPro: Protein of unknown function DUF45; hypothetical protein 3106275 4212225 ABO_2745 Alcanivorax borkumensis SK2 hypothetical protein YP_694465.1 3105610 R 393595 CDS YP_694466.1 110835607 4212226 complement(3106429..3109521) 1 NC_008260.1 identified by sequence similarity; InterPro: Acriflavin resistance protein The E.coli acrA and acrB genes encode a multi-drug efflux system that isbelieved to protect the bacterium against hydrophobic inhibitors [MEDLINE:94012493]. Members of this family are integral membrane proteins some of which are involved in drug resistance. Proteins which belong to this family (AcrB/AcrD/AcrF family protein) include the P.aeruginosa multidrug resistance protein mexB, A.eutrophus cation efflux system protein czcA, and various R.meliloti nodulation proteins.; Family membership; AcrB/AcrD/AcrF family protein 3109521 4212226 ABO_2746 Alcanivorax borkumensis SK2 AcrB/AcrD/AcrF family protein YP_694466.1 3106429 R 393595 CDS YP_694467.1 110835608 4212227 complement(3109518..3110666) 1 NC_008260.1 (RND efflux membrane fusion protein, ); identify by sequence similarity, .; Family membership; RND efflux membrane fusion protein 3110666 4212227 ABO_2747 Alcanivorax borkumensis SK2 RND efflux membrane fusion protein YP_694467.1 3109518 R 393595 CDS YP_694468.1 110835609 4213402 complement(3110974..3112605) 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR01734 InterPro: AMP-dependent synthetase and ligase; High confidence in function and specificity; medium-chain-fatty-acid--CoA ligase 3112605 alkK 4213402 alkK Alcanivorax borkumensis SK2 medium-chain-fatty-acid--CoA ligase YP_694468.1 3110974 R 393595 CDS YP_694469.1 110835610 4212228 complement(3112833..3114221) 1 NC_008260.1 class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 3114221 fumC 4212228 fumC Alcanivorax borkumensis SK2 fumarate hydratase YP_694469.1 3112833 R 393595 CDS YP_694470.1 110835611 4212229 complement(3114337..3114945) 1 NC_008260.1 transcriptional regulator, TetR family; Family membership; TetR family transcriptional regulator 3114945 4212229 ABO_2750 Alcanivorax borkumensis SK2 TetR family transcriptional regulator YP_694470.1 3114337 R 393595 CDS YP_694471.1 110835612 4212230 3115106..3115672 1 NC_008260.1 identified by match to TIGR protein family HMMTIGR00778; Family membership; alkylhydroperoxidase 3115672 4212230 ABO_2751 Alcanivorax borkumensis SK2 alkylhydroperoxidase YP_694471.1 3115106 D 393595 CDS YP_694472.1 110835613 4211925 complement(3115823..3117193) 1 NC_008260.1 (trmE, thdF) (tRNA modification GTPase, previously known as thiophene and furan oxidation protein ThdF) identified by match to PFAM protein family HMMPF04183 InterPro: tRNA modification GTPase TrmE; High confidence in function and specificity; tRNA modification GTPase 3117193 trmE 4211925 trmE Alcanivorax borkumensis SK2 tRNA modification GTPase YP_694472.1 3115823 R 393595 CDS YP_694473.1 110835614 4211573 complement(3117307..3119055) 1 NC_008260.1 (inner membrane protein 60 kDa, ) identified by sequencesimilarity; InterPro: 60Kd inner membrane protein; Family membership; hypothetical protein 3119055 yidC 4211573 yidC Alcanivorax borkumensis SK2 hypothetical protein YP_694473.1 3117307 R 393595 CDS YP_694474.1 110835615 4212169 complement(3119096..3119461) 1 NC_008260.1 (ribonuclease P, protein component) identified by sequence similarity; InterPro: Bacterial ribonuclease P protein; High confidence in function and specificity; ribonuclease P, protein component 3119461 rnpA 4212169 rnpA Alcanivorax borkumensis SK2 ribonuclease P, protein component YP_694474.1 3119096 R 393595 CDS YP_694475.1 110835616 4212360 complement(3119500..3119634) 1 NC_008260.1 identified by match to PFAM protein family HMMPF00468 InterPro: Ribosomal protein L34; High confidence in function and specificity; 50S ribosomal protein L34 3119634 rpmH 4212360 rpmH Alcanivorax borkumensis SK2 50S ribosomal protein L34 YP_694475.1 3119500 R 393595 CDS