-- dump date 20140618_193342 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 311402000001 SEQ_END SEQ_END NC_011981.1 631775 631775 DR NC_011981.1; contig end 631775..631775 Agrobacterium vitis S4 311402000002 SEQ_END SEQ_END NC_011982.1 258824 258824 DR NC_011982.1; contig end 258824..258824 Agrobacterium vitis S4 311402000003 SEQ_END SEQ_END NC_011984.1 211620 211620 DR NC_011984.1; contig end 211620..211620 Agrobacterium vitis S4 311402000004 SEQ_END SEQ_END NC_011986.1 78730 78730 DR NC_011986.1; contig end 78730..78730 Agrobacterium vitis S4 311402000005 SEQ_END SEQ_END NC_011988.1 1283187 1283187 DR NC_011988.1; contig end 1283187..1283187 Agrobacterium vitis S4 311402000006 SEQ_END SEQ_END NC_011989.1 3726375 3726375 DR NC_011989.1; contig end 3726375..3726375 Agrobacterium vitis S4 311402000007 SEQ_END SEQ_END NC_011991.1 130435 130435 DR NC_011991.1; contig end 130435..130435 Agrobacterium vitis S4 YP_002539452.1 CDS repA NC_011981.1 70 1296 D replication protein A 70..1296 Agrobacterium vitis S4 7380202 YP_002539453.1 CDS repB NC_011981.1 1293 2306 D replication protein B 1293..2306 Agrobacterium vitis S4 7380204 YP_002539454.1 CDS repC NC_011981.1 2470 3684 D replication initiation protein RepC 2470..3684 Agrobacterium vitis S4 7380205 YP_002539455.1 CDS Avi_7004 NC_011981.1 4003 5256 R Flavin-containing monooxygenase complement(4003..5256) Agrobacterium vitis S4 7380206 YP_002539456.1 CDS Avi_7005 NC_011981.1 5807 7513 D GGDEF family protein 5807..7513 Agrobacterium vitis S4 7380207 YP_002539457.1 CDS Avi_7008 NC_011981.1 7955 9118 R phage integrase family protein complement(7955..9118) Agrobacterium vitis S4 7380208 YP_002539458.1 CDS Avi_7013 NC_011981.1 11193 11645 R transcriptional regulator complement(11193..11645) Agrobacterium vitis S4 7380211 YP_002539459.1 CDS mdh NC_011981.1 11936 12985 R malate dehydrogenase complement(11936..12985) Agrobacterium vitis S4 7380212 YP_002539460.1 CDS Avi_7015 NC_011981.1 13283 14869 D ABC transporter substrate binding protein (oligopeptide) 13283..14869 Agrobacterium vitis S4 7380213 YP_002539461.1 CDS hyuA NC_011981.1 14987 17008 D hydantoin utilization protein 14987..17008 Agrobacterium vitis S4 7380214 YP_002539462.1 CDS hyuB NC_011981.1 17011 18726 D hydantoin utilization protein 17011..18726 Agrobacterium vitis S4 7380215 YP_002539463.1 CDS dppC NC_011981.1 18723 19625 D peptide ABC transporter permease 18723..19625 Agrobacterium vitis S4 7380216 YP_002539464.1 CDS dppB NC_011981.1 19628 20629 D peptide ABC transporter permease 19628..20629 Agrobacterium vitis S4 7380217 YP_002539465.1 CDS Avi_7020 NC_011981.1 20632 21648 D ABC transporter nucleotide binding/ATPase protein (oligopeptide) 20632..21648 Agrobacterium vitis S4 7380218 YP_002539466.1 CDS Avi_7021 NC_011981.1 21645 22625 D ABC transporter nucleotide binding/ATPase protein (oligopeptide) 21645..22625 Agrobacterium vitis S4 7380219 YP_002539467.1 CDS Avi_7022 NC_011981.1 22680 23708 D hypothetical protein 22680..23708 Agrobacterium vitis S4 7380220 YP_002539468.1 CDS Avi_7026 NC_011981.1 24717 25697 R ABC transporter nucleotide binding/ATPase protein (oligopeptide) complement(24717..25697) Agrobacterium vitis S4 7380223 YP_002539469.1 CDS Avi_7027 NC_011981.1 25694 26662 R ABC transporter nucleotide binding/ATPase protein (oligopeptide) complement(25694..26662) Agrobacterium vitis S4 7380224 YP_002539470.1 CDS Avi_7028 NC_011981.1 26664 27590 R peptide ABC transporter permease complement(26664..27590) Agrobacterium vitis S4 7380225 YP_002539471.1 CDS Avi_7029 NC_011981.1 27595 28518 R peptide ABC transporter permease complement(27595..28518) Agrobacterium vitis S4 7380226 YP_002539472.1 CDS Avi_7030 NC_011981.1 28572 30185 R ABC transporter substrate binding protein (oligopeptide) complement(28572..30185) Agrobacterium vitis S4 7380227 YP_002539473.1 CDS Avi_7032 NC_011981.1 30546 31193 D TetR family transcriptional regulator 30546..31193 Agrobacterium vitis S4 7380228 YP_002539474.1 CDS Avi_7033 NC_011981.1 31376 31669 D hypothetical protein 31376..31669 Agrobacterium vitis S4 7380229 YP_002539475.1 CDS Avi_7034 NC_011981.1 31828 33282 R hypothetical cytosolic protein complement(31828..33282) Agrobacterium vitis S4 7380230 YP_002539476.1 CDS parB NC_011981.1 33780 35495 D ParB family; plasmid partitioning protein 33780..35495 Agrobacterium vitis S4 7380231 YP_002539477.1 CDS Avi_7036 NC_011981.1 35577 36239 D hypothetical protein 35577..36239 Agrobacterium vitis S4 7380232 YP_002539478.1 CDS Avi_7038 NC_011981.1 36664 37509 D hypothetical protein 36664..37509 Agrobacterium vitis S4 7380233 YP_002539479.1 CDS Avi_7039 NC_011981.1 37605 38432 R short chain dehydrogenase complement(37605..38432) Agrobacterium vitis S4 7380234 YP_002539480.1 CDS Avi_7040 NC_011981.1 38508 39440 D AraC family transcriptional regulator 38508..39440 Agrobacterium vitis S4 7380235 YP_002539481.1 CDS Avi_7041 NC_011981.1 39527 39943 R hypothetical protein complement(39527..39943) Agrobacterium vitis S4 7380236 YP_002539482.1 CDS hupT NC_011981.1 40213 40491 R HNS-type DNA binding protein complement(40213..40491) Agrobacterium vitis S4 7380237 YP_002539483.1 CDS Avi_7043 NC_011981.1 40592 41044 D transposase 40592..41044 Agrobacterium vitis S4 7380238 YP_002539484.1 CDS Avi_7044 NC_011981.1 41041 41394 D transposase 41041..41394 Agrobacterium vitis S4 7380239 YP_002539485.1 CDS Avi_7045 NC_011981.1 41440 43098 D transposase 41440..43098 Agrobacterium vitis S4 7380240 YP_002539486.1 CDS Avi_7046 NC_011981.1 43079 43312 R transposase complement(43079..43312) Agrobacterium vitis S4 7380028 YP_002539487.1 CDS Avi_7047 NC_011981.1 43451 43663 R hypothetical protein complement(43451..43663) Agrobacterium vitis S4 7380111 YP_002539488.1 CDS Avi_7050 NC_011981.1 43932 44465 R hypothetical protein complement(43932..44465) Agrobacterium vitis S4 7380112 YP_002539489.1 CDS Avi_7051 NC_011981.1 44560 45033 R hypothetical protein complement(44560..45033) Agrobacterium vitis S4 7380113 YP_002539490.1 CDS Avi_7052 NC_011981.1 45038 46090 R hypothetical protein complement(45038..46090) Agrobacterium vitis S4 7380114 YP_002539491.1 CDS Avi_7053 NC_011981.1 46095 47153 R hypothetical protein complement(46095..47153) Agrobacterium vitis S4 7380115 YP_002539492.1 CDS Avi_7054 NC_011981.1 47162 48556 R hypothetical protein complement(47162..48556) Agrobacterium vitis S4 7380116 YP_002539493.1 CDS Avi_7055 NC_011981.1 48553 49623 R hypothetical protein complement(48553..49623) Agrobacterium vitis S4 7380117 YP_002539494.1 CDS vgrG NC_011981.1 49634 51859 R vgrG protein complement(49634..51859) Agrobacterium vitis S4 7380118 YP_002539495.1 CDS Avi_7057 NC_011981.1 52241 52570 R hypothetical protein complement(52241..52570) Agrobacterium vitis S4 7380119 YP_002539496.1 CDS Avi_7058 NC_011981.1 52567 52872 R hypothetical protein complement(52567..52872) Agrobacterium vitis S4 7380120 YP_002539497.1 CDS traG NC_011981.1 53348 55315 R VirD4 family; conjugal transfer coupling protein TraG complement(53348..55315) Agrobacterium vitis S4 7380121 YP_002539498.1 CDS traD NC_011981.1 55302 55547 R conjugal transfer protein TraD complement(55302..55547) Agrobacterium vitis S4 7380122 YP_002539499.1 CDS traC NC_011981.1 55522 55818 R conjugal transfer protein Dtr system complement(55522..55818) Agrobacterium vitis S4 7380123 YP_002539500.1 CDS traA NC_011981.1 56074 59376 D conjugal transfer system TraA; oriT nicking enzyme; Dtr system oriT relaxase 56074..59376 Agrobacterium vitis S4 7380124 YP_002539501.1 CDS traF NC_011981.1 59394 59903 D conjugal transfer pilin processing protease TraF 59394..59903 Agrobacterium vitis S4 7380125 YP_002539502.1 CDS traB NC_011981.1 59974 61059 D conjugal transfer protein TraB 59974..61059 Agrobacterium vitis S4 7380126 YP_002539503.1 CDS traH NC_011981.1 61071 61721 D conjugal transfer protein TraH 61071..61721 Agrobacterium vitis S4 7380127 YP_002539504.1 CDS Avi_7070 NC_011981.1 62486 63337 D AraC family transcriptional regulator 62486..63337 Agrobacterium vitis S4 7380128 YP_002539505.1 CDS Avi_7072 NC_011981.1 63440 64354 D hypothetical protein 63440..64354 Agrobacterium vitis S4 7380129 YP_002539506.1 CDS Avi_7073 NC_011981.1 64988 65404 D transcriptional regulator 64988..65404 Agrobacterium vitis S4 7380130 YP_002539507.1 CDS Avi_7074 NC_011981.1 65523 66239 R transposase complement(65523..66239) Agrobacterium vitis S4 7380131 YP_002539508.1 CDS Avi_7075 NC_011981.1 66567 67679 R major facilitator family transporter complement(66567..67679) Agrobacterium vitis S4 7380132 YP_002539509.1 CDS Avi_7076 NC_011981.1 67729 68790 R zinc-binding dehydrogenase complement(67729..68790) Agrobacterium vitis S4 7380133 YP_002539510.1 CDS menG NC_011981.1 69237 69911 R hypothetical protein complement(69237..69911) Agrobacterium vitis S4 7380134 YP_002539511.1 CDS serA NC_011981.1 69942 70892 R D-3-phosphoglycerate dehydrogenase complement(69942..70892) Agrobacterium vitis S4 7380135 YP_002539512.1 CDS Avi_7080 NC_011981.1 71096 71791 D Transcriptional regulator 71096..71791 Agrobacterium vitis S4 7380136 YP_002539513.1 CDS Avi_7081 NC_011981.1 71843 72802 D hypothetical protein 71843..72802 Agrobacterium vitis S4 7380137 YP_002539514.1 CDS Avi_7082 NC_011981.1 72799 73260 D hypothetical protein 72799..73260 Agrobacterium vitis S4 7380138 YP_002539515.1 CDS Avi_7083 NC_011981.1 73292 74800 D hypothetical protein 73292..74800 Agrobacterium vitis S4 7380139 YP_002539516.1 CDS Avi_7084 NC_011981.1 74891 76069 D dehydrogenase 74891..76069 Agrobacterium vitis S4 7380140 YP_002539517.1 CDS Avi_7085 NC_011981.1 76152 76820 R transposase complement(76152..76820) Agrobacterium vitis S4 7380141 YP_002539518.1 CDS ameR NC_011981.1 76852 77577 R TetR family transcriptional regulator complement(76852..77577) Agrobacterium vitis S4 7380142 YP_002539519.1 CDS Avi_7087 NC_011981.1 77781 79088 D ABC transporter substrate-binding protein 77781..79088 Agrobacterium vitis S4 7380143 YP_002539520.1 CDS rbsA NC_011981.1 79081 79842 D ABC transporter nucleotide binding/ATPase protein (ribose) 79081..79842 Agrobacterium vitis S4 7380144 YP_002539521.1 CDS Avi_7089 NC_011981.1 79820 80524 D ABC transporter ATPase 79820..80524 Agrobacterium vitis S4 7380145 YP_002539522.1 CDS Avi_7090 NC_011981.1 80521 81390 D urea/amide ABC transporter permease 80521..81390 Agrobacterium vitis S4 7380146 YP_002539523.1 CDS Avi_7091 NC_011981.1 81387 82346 D ABC transporter ATPase 81387..82346 Agrobacterium vitis S4 7380147 YP_002539524.1 CDS Avi_7092 NC_011981.1 82343 83800 D amidase 82343..83800 Agrobacterium vitis S4 7380148 YP_002539525.1 CDS Avi_7093 NC_011981.1 83891 84262 D transposase 83891..84262 Agrobacterium vitis S4 7380149 YP_002539526.1 CDS Avi_7095 NC_011981.1 84346 84654 D transposase 84346..84654 Agrobacterium vitis S4 7380150 YP_002539527.1 CDS Avi_7096 NC_011981.1 84694 85212 D hypothetical protein 84694..85212 Agrobacterium vitis S4 7380151 YP_002539528.1 CDS rhtB NC_011981.1 85515 86114 R RhtB family transporter complement(85515..86114) Agrobacterium vitis S4 7380152 YP_002539529.1 CDS Avi_7100 NC_011981.1 86119 86688 R hypothetical protein complement(86119..86688) Agrobacterium vitis S4 7380153 YP_002539530.1 CDS Avi_7103 NC_011981.1 87943 88314 R Transposase and inactivated derivatives IS5 family complement(87943..88314) Agrobacterium vitis S4 7380155 YP_002539531.1 CDS Avi_7104 NC_011981.1 88356 88640 R hypothetical protein complement(88356..88640) Agrobacterium vitis S4 7380156 YP_002539532.1 CDS Avi_7106 NC_011981.1 88930 90174 D phosphoenolpyruvate synthase-related protein 88930..90174 Agrobacterium vitis S4 7380157 YP_002539533.1 CDS Avi_7108 NC_011981.1 90249 91325 D hypothetical protein 90249..91325 Agrobacterium vitis S4 7380158 YP_002539534.1 CDS Avi_7109 NC_011981.1 91322 91936 D hypothetical protein 91322..91936 Agrobacterium vitis S4 7380159 YP_002539535.1 CDS Avi_7110 NC_011981.1 91936 92706 D transferase 91936..92706 Agrobacterium vitis S4 7380160 YP_002539536.1 CDS rhtB NC_011981.1 92703 93350 D RhtB family transporter 92703..93350 Agrobacterium vitis S4 7380161 YP_002539537.1 CDS Avi_7112 NC_011981.1 93419 94009 D hypothetical protein 93419..94009 Agrobacterium vitis S4 7380162 YP_002539538.1 CDS Avi_7114 NC_011981.1 94454 95137 R transposase complement(94454..95137) Agrobacterium vitis S4 7380163 YP_002539539.1 CDS Avi_7117 NC_011981.1 95236 95781 R transposase complement(95236..95781) Agrobacterium vitis S4 7380164 YP_002539540.1 CDS Avi_7120 NC_011981.1 95854 96180 R transposase complement(95854..96180) Agrobacterium vitis S4 7380165 YP_002539541.1 CDS Avi_7121 NC_011981.1 96351 97313 R LysR family transcriptional regulator complement(96351..97313) Agrobacterium vitis S4 7380166 YP_002539542.1 CDS Avi_7122 NC_011981.1 97429 98709 R MFS permease complement(97429..98709) Agrobacterium vitis S4 7380167 YP_002539543.1 CDS Avi_7123 NC_011981.1 98742 99611 R D-N-carbamoylase complement(98742..99611) Agrobacterium vitis S4 7380168 YP_002539544.1 CDS Avi_7125 NC_011981.1 99745 100434 R hydrolase complement(99745..100434) Agrobacterium vitis S4 7380169 YP_002539545.1 CDS Avi_7126 NC_011981.1 100680 101783 D hypothetical protein 100680..101783 Agrobacterium vitis S4 7380170 YP_002539546.1 CDS Avi_7127 NC_011981.1 102052 103362 R hypothetical protein complement(102052..103362) Agrobacterium vitis S4 7380171 YP_002539547.1 CDS Avi_7128 NC_011981.1 103570 104073 D flavoprotein oxidoreductase 103570..104073 Agrobacterium vitis S4 7380172 YP_002539548.1 CDS Avi_7129 NC_011981.1 104155 105462 D ABC transporter substrate binding protein (spermidine/putrescine) 104155..105462 Agrobacterium vitis S4 7380173 YP_002539549.1 CDS Avi_7130 NC_011981.1 105491 106360 D spermidine/putrescine ABC transporter permease 105491..106360 Agrobacterium vitis S4 7380174 YP_002539550.1 CDS Avi_7131 NC_011981.1 106364 107209 D spermidine/putrescine ABC transporter permease 106364..107209 Agrobacterium vitis S4 7380175 YP_002539551.1 CDS Avi_7132 NC_011981.1 107237 108310 D ABC transporter nucleotide binding/ATPase protein (spermidine/putrescine) 107237..108310 Agrobacterium vitis S4 7380176 YP_002539552.1 CDS Avi_7134 NC_011981.1 108406 109317 R Integrase catalytic core complement(108406..109317) Agrobacterium vitis S4 7380177 YP_002539553.1 CDS Avi_7135 NC_011981.1 109395 109688 R hypothetical protein complement(109395..109688) Agrobacterium vitis S4 7380178 YP_002539554.1 CDS Avi_7136 NC_011981.1 109685 109978 R hypothetical protein complement(109685..109978) Agrobacterium vitis S4 7380179 YP_002539555.1 CDS Avi_7140 NC_011981.1 110468 110992 D AraC family transcriptional regulator 110468..110992 Agrobacterium vitis S4 7380180 YP_002539556.1 CDS Avi_7142 NC_011981.1 111121 111663 D hypothetical protein 111121..111663 Agrobacterium vitis S4 7380181 YP_002539557.1 CDS Avi_7144 NC_011981.1 112177 113175 R OmpA family protein complement(112177..113175) Agrobacterium vitis S4 7380182 YP_002539558.1 CDS Avi_7146 NC_011981.1 114361 114690 D Restriction endonuclease 114361..114690 Agrobacterium vitis S4 7380183 YP_002539559.1 CDS Avi_7148 NC_011981.1 114792 115490 R transposase complement(114792..115490) Agrobacterium vitis S4 7380184 YP_002539560.1 CDS virH2 NC_011981.1 115974 117344 D P-450 monooxygenase 115974..117344 Agrobacterium vitis S4 7380185 YP_002539561.1 CDS Avi_7150 NC_011981.1 117341 118090 D methyltransferase 117341..118090 Agrobacterium vitis S4 7380186 YP_002539562.1 CDS Avi_7151 NC_011981.1 118131 118826 D hypothetical protein 118131..118826 Agrobacterium vitis S4 7380187 YP_002539563.1 CDS Avi_7152 NC_011981.1 118848 119786 D sulfotransferase 118848..119786 Agrobacterium vitis S4 7380188 YP_002539564.1 CDS Avi_7153 NC_011981.1 119889 120803 R hypothetical protein complement(119889..120803) Agrobacterium vitis S4 7380189 YP_002539565.1 CDS Avi_7154 NC_011981.1 121123 121797 R transposase complement(121123..121797) Agrobacterium vitis S4 7380190 YP_002539566.1 CDS Avi_7155 NC_011981.1 122247 123653 D nitrilotriacetate monooxygenase 122247..123653 Agrobacterium vitis S4 7380191 YP_002539567.1 CDS Avi_7156 NC_011981.1 123779 124573 D ABC transporter nucleotide binding/ATPase protein (branched chain amino acid) 123779..124573 Agrobacterium vitis S4 7380192 YP_002539568.1 CDS Avi_7157 NC_011981.1 124570 125451 D branched-chain amino acid ABC transporter permease 124570..125451 Agrobacterium vitis S4 7380203 YP_002539569.1 CDS Avi_7158 NC_011981.1 125455 126507 D branched-chain amino acid ABC transporter permease 125455..126507 Agrobacterium vitis S4 7380324 YP_002539570.1 CDS Avi_7159 NC_011981.1 126525 127853 D hypothetical protein 126525..127853 Agrobacterium vitis S4 7380325 YP_002539571.1 CDS Avi_7160 NC_011981.1 127916 129265 D hypothetical protein 127916..129265 Agrobacterium vitis S4 7380326 YP_002539572.1 CDS Avi_7161 NC_011981.1 129417 130217 D ABC transporter nucleotide binding/ATPase protein (branched chain amino acid) 129417..130217 Agrobacterium vitis S4 7380327 YP_002539573.1 CDS Avi_7162 NC_011981.1 130257 131483 D thermophilic desulfurizing enzyme 130257..131483 Agrobacterium vitis S4 7380328 YP_002539574.1 CDS tauA NC_011981.1 131638 132648 D taurine ABC transporter periplasmic binding protein 131638..132648 Agrobacterium vitis S4 7380329 YP_002539575.1 CDS Avi_7165 NC_011981.1 132716 133507 D ABC transporter ATPase 132716..133507 Agrobacterium vitis S4 7380330 YP_002539576.1 CDS Avi_7166 NC_011981.1 133570 134355 D taurine uptake ABC transporter permease protein 133570..134355 Agrobacterium vitis S4 7380331 YP_002539577.1 CDS ssuD NC_011981.1 134438 135508 R sulfonate monooxygenase complement(134438..135508) Agrobacterium vitis S4 7380332 YP_002539578.1 CDS Avi_7168 NC_011981.1 135594 136652 R hypothetical protein complement(135594..136652) Agrobacterium vitis S4 7380333 YP_002539579.1 CDS Avi_7169 NC_011981.1 136667 137269 R hypothetical protein complement(136667..137269) Agrobacterium vitis S4 7380334 YP_002539580.1 CDS Avi_7170 NC_011981.1 137282 137860 R hypothetical protein complement(137282..137860) Agrobacterium vitis S4 7380335 YP_002539581.1 CDS Avi_7171 NC_011981.1 137893 138939 R monooxygenase complement(137893..138939) Agrobacterium vitis S4 7380336 YP_002539582.1 CDS Avi_7172 NC_011981.1 138936 140579 R ABC transporter nucleotide binding/ATPase protein (oligopeptide) complement(138936..140579) Agrobacterium vitis S4 7380337 YP_002539583.1 CDS dppC NC_011981.1 140576 141454 R peptide ABC transporter permease complement(140576..141454) Agrobacterium vitis S4 7380338 YP_002539584.1 CDS dppB NC_011981.1 141451 142395 R peptide ABC transporter permease complement(141451..142395) Agrobacterium vitis S4 7380339 YP_002539585.1 CDS Avi_7175 NC_011981.1 142458 144089 R ABC transporter substrate binding protein (oligopeptide) complement(142458..144089) Agrobacterium vitis S4 7380340 YP_002539586.1 CDS acd NC_011981.1 144788 145972 R acyl-CoA dehydrogenase complement(144788..145972) Agrobacterium vitis S4 7380341 YP_002539587.1 CDS Avi_7180 NC_011981.1 145969 147003 R desulfurizing enzyme complement(145969..147003) Agrobacterium vitis S4 7380342 YP_002539588.1 CDS Avi_7181 NC_011981.1 147070 148698 R ABC transporter substrate binding protein (oligopeptide) complement(147070..148698) Agrobacterium vitis S4 7380343 YP_002539589.1 CDS Avi_7182 NC_011981.1 148964 149953 D peptide ABC transporter permease 148964..149953 Agrobacterium vitis S4 7380344 YP_002539590.1 CDS Avi_7183 NC_011981.1 149950 150957 D peptide ABC transporter permease 149950..150957 Agrobacterium vitis S4 7380345 YP_002539591.1 CDS Avi_7185 NC_011981.1 150954 151952 D ABC transporter nucleotide binding/ATPase protein (oligopeptide) 150954..151952 Agrobacterium vitis S4 7380346 YP_002539592.1 CDS Avi_7187 NC_011981.1 151930 152871 D ABC transporter nucleotide binding/ATPase protein (oligopeptide) 151930..152871 Agrobacterium vitis S4 7380347 YP_002539593.1 CDS Avi_7188 NC_011981.1 152887 153936 D aldo/keto reductase 152887..153936 Agrobacterium vitis S4 7380348 YP_002539594.1 CDS acd NC_011981.1 153997 155235 D acyl-CoA dehydrogenase 153997..155235 Agrobacterium vitis S4 7380349 YP_002539595.1 CDS Avi_7190 NC_011981.1 155286 156047 R Nitroreductase complement(155286..156047) Agrobacterium vitis S4 7380350 YP_002539596.1 CDS Avi_7191 NC_011981.1 156158 157852 R ABC transporter ATPase complement(156158..157852) Agrobacterium vitis S4 7380351 YP_002539597.1 CDS Avi_7192 NC_011981.1 157849 158775 R peptide ABC transporter permease complement(157849..158775) Agrobacterium vitis S4 7380352 YP_002539598.1 CDS Avi_7193 NC_011981.1 158780 159760 R peptide ABC transporter permease complement(158780..159760) Agrobacterium vitis S4 7380353 YP_002539599.1 CDS Avi_7194 NC_011981.1 159867 161453 R ABC transporter substrate binding protein (oligopeptide) complement(159867..161453) Agrobacterium vitis S4 7380354 YP_002539600.1 CDS Avi_7195 NC_011981.1 161669 163000 R monooxygenase complement(161669..163000) Agrobacterium vitis S4 7380355 YP_002539601.1 CDS Avi_7196 NC_011981.1 163043 163828 R sulfate ester transporter permease protein complement(163043..163828) Agrobacterium vitis S4 7380356 YP_002539602.1 CDS Avi_7197 NC_011981.1 163831 164649 R aliphatic sulfonate ABC transporter permease complement(163831..164649) Agrobacterium vitis S4 7380357 YP_002539603.1 CDS Avi_7198 NC_011981.1 164673 165746 R ABC transporter substrate binding protein (aliphatic sulfonate) complement(164673..165746) Agrobacterium vitis S4 7380358 YP_002539604.1 CDS ssuB NC_011981.1 165813 166649 R ABC transporter nucleotide binding/ATPase protein (nitrate/sulfonates) complement(165813..166649) Agrobacterium vitis S4 7380359 YP_002539605.1 CDS Avi_7200 NC_011981.1 166775 168115 R nitrilotriacetate monooxygenase complement(166775..168115) Agrobacterium vitis S4 7380360 YP_002539606.1 CDS Avi_7201 NC_011981.1 168138 169769 R ABC transporter nucleotide binding/ATPase protein (peptide) complement(168138..169769) Agrobacterium vitis S4 7380361 YP_002539607.1 CDS dppC NC_011981.1 169766 170638 R peptide ABC transporter permease complement(169766..170638) Agrobacterium vitis S4 7380362 YP_002539608.1 CDS Avi_7203 NC_011981.1 170635 171681 R peptide ABC transporter permease complement(170635..171681) Agrobacterium vitis S4 7380363 YP_002539609.1 CDS Avi_7206 NC_011981.1 175062 176063 R hypothetical protein complement(175062..176063) Agrobacterium vitis S4 7380365 YP_002539610.1 CDS Avi_7207 NC_011981.1 176317 176943 D acetyltransferase 176317..176943 Agrobacterium vitis S4 7380366 YP_002539611.1 CDS Avi_7208 NC_011981.1 177000 178025 D monooxygenase 177000..178025 Agrobacterium vitis S4 7380367 YP_002539612.1 CDS Avi_7209 NC_011981.1 178062 179063 D hypothetical protein 178062..179063 Agrobacterium vitis S4 7380368 YP_002539613.1 CDS Avi_7210 NC_011981.1 179082 180416 D monooxygenase 179082..180416 Agrobacterium vitis S4 7380369 YP_002539614.1 CDS Avi_7212 NC_011981.1 181186 182781 R ABC transporter substrate binding protein (oligopeptide) complement(181186..182781) Agrobacterium vitis S4 7380370 YP_002539615.1 CDS Avi_7213 NC_011981.1 182799 183137 R hypothetical protein complement(182799..183137) Agrobacterium vitis S4 7380371 YP_002539616.1 CDS Avi_7214 NC_011981.1 183191 184789 R ABC transporter substrate binding protein (oligopeptide) complement(183191..184789) Agrobacterium vitis S4 7380372 YP_002539617.1 CDS Avi_7215 NC_011981.1 184832 186025 R hippurate hydrolase complement(184832..186025) Agrobacterium vitis S4 7380373 YP_002539618.1 CDS Avi_7216 NC_011981.1 186111 187280 R monooxygenase complement(186111..187280) Agrobacterium vitis S4 7380374 YP_002539619.1 CDS Avi_7220 NC_011981.1 188026 188994 D ABC transporter substrate binding protein (aliphatic sulfonate) 188026..188994 Agrobacterium vitis S4 7380375 YP_002539620.1 CDS Avi_7221 NC_011981.1 189020 189868 D nitrate/sulfonate ABC transporter permease 189020..189868 Agrobacterium vitis S4 7380376 YP_002539621.1 CDS Avi_7222 NC_011981.1 189868 190605 D ABC transporter ATPase 189868..190605 Agrobacterium vitis S4 7380377 YP_002539622.1 CDS nocT NC_011981.1 190715 191488 D ABC transporter substrate binding protein (nopaline) 190715..191488 Agrobacterium vitis S4 7380378 YP_002539623.1 CDS Avi_7225 NC_011981.1 191612 192271 D amino acid ABC transporter permease 191612..192271 Agrobacterium vitis S4 7380379 YP_002539624.1 CDS nocP NC_011981.1 192268 193029 D ABC transporter nucleotide binding/ATPase protein (nopaline) 192268..193029 Agrobacterium vitis S4 7380380 YP_002539625.1 CDS Avi_7228 NC_011981.1 193369 194169 D outer membrane lipoprotein 193369..194169 Agrobacterium vitis S4 7380381 YP_002539626.1 CDS Avi_7230 NC_011981.1 194247 195314 D ABC transporter ATPase 194247..195314 Agrobacterium vitis S4 7380382 YP_002539627.1 CDS Avi_7231 NC_011981.1 195319 195960 D ABC transporter permease 195319..195960 Agrobacterium vitis S4 7380383 YP_002539628.1 CDS Avi_7233 NC_011981.1 196120 196920 D outer membrane lipoprotein 196120..196920 Agrobacterium vitis S4 7380384 YP_002539629.1 CDS Avi_7234 NC_011981.1 196911 198065 D ABC transporter ATPase 196911..198065 Agrobacterium vitis S4 7380385 YP_002539630.1 CDS Avi_7235 NC_011981.1 198046 198699 D ABC transporter permease 198046..198699 Agrobacterium vitis S4 7380386 YP_002539631.1 CDS Avi_7237 NC_011981.1 199739 200020 D transposase 199739..200020 Agrobacterium vitis S4 7380387 YP_002539632.1 CDS Avi_7238 NC_011981.1 200266 200940 D GntR family transcriptional regulator 200266..200940 Agrobacterium vitis S4 7380388 YP_002539633.1 CDS nocT NC_011981.1 201032 201883 D ABC transporter substrate binding protein (nopaline) 201032..201883 Agrobacterium vitis S4 7380389 YP_002539634.1 CDS nocQ NC_011981.1 201900 202670 D nopaline ABC transporter permease 201900..202670 Agrobacterium vitis S4 7380390 YP_002539635.1 CDS nocM NC_011981.1 202667 203359 D nopaline ABC transporter permease 202667..203359 Agrobacterium vitis S4 7380391 YP_002539636.1 CDS ggt NC_011981.1 203401 204996 D gamma-glutamyltransferase 203401..204996 Agrobacterium vitis S4 7380392 YP_002539637.1 CDS Avi_7245 NC_011981.1 205215 205568 R phospholipase/Carboxylesterase family protein complement(205215..205568) Agrobacterium vitis S4 7380393 YP_002539638.1 CDS Avi_7246 NC_011981.1 205803 206186 R hypothetical protein complement(205803..206186) Agrobacterium vitis S4 7380394 YP_002539639.1 CDS Avi_7250 NC_011981.1 207210 208208 R AraC family transcriptional regulator complement(207210..208208) Agrobacterium vitis S4 7380396 YP_002539640.1 CDS Avi_7251 NC_011981.1 208262 209260 R hydroxyproline-2-epimerase complement(208262..209260) Agrobacterium vitis S4 7380397 YP_002539641.1 CDS Avi_7252 NC_011981.1 209280 210137 R ABC transporter permease complement(209280..210137) Agrobacterium vitis S4 7380398 YP_002539642.1 CDS Avi_7253 NC_011981.1 210134 210982 R ABC transporter complement(210134..210982) Agrobacterium vitis S4 7380399 YP_002539643.1 CDS Avi_7254 NC_011981.1 210993 212084 R ABC transporter ATPase complement(210993..212084) Agrobacterium vitis S4 7380400 YP_002539644.1 CDS Avi_7255 NC_011981.1 212176 213027 R ABC transporter substrate binding protein (glycine-betaine) complement(212176..213027) Agrobacterium vitis S4 7380401 YP_002539645.1 CDS Avi_7256 NC_011981.1 213106 214452 R oxidoreductase complement(213106..214452) Agrobacterium vitis S4 7380402 YP_002539646.1 CDS dhaL NC_011981.1 214449 215966 R aldehyde dehydrogenase complement(214449..215966) Agrobacterium vitis S4 7380403 YP_002539647.1 CDS dapA NC_011981.1 215959 216870 R dihydrodipicolinate synthase complement(215959..216870) Agrobacterium vitis S4 7380404 YP_002539648.1 CDS Avi_7259 NC_011981.1 216867 217577 R GntR family transcriptional regulator complement(216867..217577) Agrobacterium vitis S4 7380405 YP_002539649.1 CDS Avi_7262 NC_011981.1 217980 218669 D GntR family transcriptional regulator 217980..218669 Agrobacterium vitis S4 7380488 YP_002539650.1 CDS Avi_7263 NC_011981.1 218712 219026 R transposase complement(218712..219026) Agrobacterium vitis S4 7380489 YP_002539651.1 CDS Avi_7264 NC_011981.1 219073 219225 D truncated Tnp 219073..219225 Agrobacterium vitis S4 7380490 YP_002539652.1 CDS Avi_7265 NC_011981.1 219320 220255 R Ethanolamine kinase complement(219320..220255) Agrobacterium vitis S4 7380491 YP_002539653.1 CDS Avi_7266 NC_011981.1 220271 221236 R aminoglycoside phosphotransferase complement(220271..221236) Agrobacterium vitis S4 7380492 YP_002539654.1 CDS amaB NC_011981.1 221233 222468 R allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase complement(221233..222468) Agrobacterium vitis S4 7380493 YP_002539655.1 CDS Avi_7268 NC_011981.1 222521 223282 R transcriptional regulator DeoR family complement(222521..223282) Agrobacterium vitis S4 7380494 YP_002539656.1 CDS moaD NC_011981.1 223338 225182 R ABC transporter ATPase complement(223338..225182) Agrobacterium vitis S4 7380495 YP_002539657.1 CDS dppC NC_011981.1 225182 226102 R peptide ABC transporter permease complement(225182..226102) Agrobacterium vitis S4 7380496 YP_002539658.1 CDS Avi_7271 NC_011981.1 226099 227079 R peptide ABC transporter permease complement(226099..227079) Agrobacterium vitis S4 7380497 YP_002539659.1 CDS Avi_7272 NC_011981.1 227162 228748 R peptide ABC transporter substrate-binding protein complement(227162..228748) Agrobacterium vitis S4 7380498 YP_002539660.1 CDS Avi_7273 NC_011981.1 229181 230149 D DNA topoisomerase 229181..230149 Agrobacterium vitis S4 7380499 YP_002539661.1 CDS Avi_7274 NC_011981.1 230317 233289 D hypothetical protein 230317..233289 Agrobacterium vitis S4 7380500 YP_002539662.1 CDS Avi_7275 NC_011981.1 233401 233913 R hypothetical protein complement(233401..233913) Agrobacterium vitis S4 7380501 YP_002539663.1 CDS Avi_7276 NC_011981.1 234111 235064 D hypothetical protein 234111..235064 Agrobacterium vitis S4 7380502 YP_002539664.1 CDS Avi_7277 NC_011981.1 235067 235753 D hypothetical protein 235067..235753 Agrobacterium vitis S4 7380503 YP_002539665.1 CDS Avi_7278 NC_011981.1 235794 236444 R Transcriptional regulator complement(235794..236444) Agrobacterium vitis S4 7380504 YP_002539666.1 CDS Avi_7279 NC_011981.1 236582 238144 D hypothetical protein 236582..238144 Agrobacterium vitis S4 7380505 YP_002539667.1 CDS Avi_7280 NC_011981.1 238155 238655 D Electron transport protein SCO1/SenC 238155..238655 Agrobacterium vitis S4 7380506 YP_002539668.1 CDS Avi_7281 NC_011981.1 239090 239491 D hypothetical protein 239090..239491 Agrobacterium vitis S4 7380507 YP_002539669.1 CDS Avi_7282 NC_011981.1 239488 240621 D HlyD family secretion protein 239488..240621 Agrobacterium vitis S4 7380508 YP_002539670.1 CDS Avi_7283 NC_011981.1 240618 243674 D Acr family transporter 240618..243674 Agrobacterium vitis S4 7380509 YP_002539671.1 CDS fecR NC_011981.1 243791 244750 R two component sensor kinase complement(243791..244750) Agrobacterium vitis S4 7380510 YP_002539672.1 CDS Avi_7286 NC_011981.1 245080 245622 R sigma factor complement(245080..245622) Agrobacterium vitis S4 7380511 YP_002539673.1 CDS fecE NC_011981.1 245916 246710 R ABC transporter nucleotide binding/ATPase protein (iron (III) dicitrate) complement(245916..246710) Agrobacterium vitis S4 7380512 YP_002539674.1 CDS fecD NC_011981.1 246700 247683 R ABC transporter complement(246700..247683) Agrobacterium vitis S4 7380513 YP_002539675.1 CDS fecC NC_011981.1 247680 248708 R Fe3+ dicitrate ABC transporter permease complement(247680..248708) Agrobacterium vitis S4 7380514 YP_002539676.1 CDS fecB NC_011981.1 248705 249640 R Fe3+ dicitrate ABC transporter permease complement(248705..249640) Agrobacterium vitis S4 7380515 YP_002539677.1 CDS Avi_7293 NC_011981.1 249699 252206 R TonB-dependent receptor complement(249699..252206) Agrobacterium vitis S4 7380516 YP_002539678.1 CDS Avi_7294 NC_011981.1 252303 253181 R hypothetical protein complement(252303..253181) Agrobacterium vitis S4 7380517 YP_002539679.1 CDS grsT NC_011981.1 253238 254032 R thioesterase complement(253238..254032) Agrobacterium vitis S4 7380518 YP_002539680.1 CDS mcyB NC_011981.1 254029 255603 R microcystin synthetase B complement(254029..255603) Agrobacterium vitis S4 7380519 YP_002539681.1 CDS Avi_7298 NC_011981.1 255728 263449 R peptide synthetase complement(255728..263449) Agrobacterium vitis S4 7380520 YP_002539682.1 CDS Avi_7299 NC_011981.1 263446 267846 R polyketide synthetase complement(263446..267846) Agrobacterium vitis S4 7380521 YP_002539683.1 CDS Avi_7300 NC_011981.1 267880 268440 R hypothetical protein complement(267880..268440) Agrobacterium vitis S4 7380522 YP_002539684.1 CDS Avi_7301 NC_011981.1 268437 269015 R hypothetical protein complement(268437..269015) Agrobacterium vitis S4 7380523 YP_002539685.1 CDS mcyE NC_011981.1 269252 270652 R polyketide synthase and peptide synthetase complement(269252..270652) Agrobacterium vitis S4 7380524 YP_002539686.1 CDS Avi_7304 NC_011981.1 270649 271539 R hypothetical protein complement(270649..271539) Agrobacterium vitis S4 7380525 YP_002539687.1 CDS Avi_7306 NC_011981.1 271520 276040 R peptide synthetase complement(271520..276040) Agrobacterium vitis S4 7380526 YP_002539688.1 CDS Avi_7308 NC_011981.1 276366 278633 D polyketide synthetase 276366..278633 Agrobacterium vitis S4 7380527 YP_002539689.1 CDS Avi_7309 NC_011981.1 278797 283257 D polyketide synthase 278797..283257 Agrobacterium vitis S4 7380528 YP_002539690.1 CDS Avi_7310 NC_011981.1 283302 284369 D monooxygenase 283302..284369 Agrobacterium vitis S4 7380529 YP_002539691.1 CDS Avi_7311 NC_011981.1 284375 290926 D peptide synthetase 284375..290926 Agrobacterium vitis S4 7380530 YP_002539692.1 CDS Avi_7312 NC_011981.1 290930 292306 D hypothetical protein 290930..292306 Agrobacterium vitis S4 7380531 YP_002539693.1 CDS Avi_7313 NC_011981.1 292394 292912 D hypothetical protein 292394..292912 Agrobacterium vitis S4 7380532 YP_002539694.1 CDS Avi_7315 NC_011981.1 293638 294453 R hypothetical protein complement(293638..294453) Agrobacterium vitis S4 7380533 YP_002539695.1 CDS Avi_7317 NC_011981.1 294618 294815 R transposase complement(294618..294815) Agrobacterium vitis S4 7380534 YP_002539696.1 CDS Avi_7320 NC_011981.1 295759 298083 D methyl-accepting chemotaxis protein 295759..298083 Agrobacterium vitis S4 7380536 YP_002539697.1 CDS asg NC_011981.1 298934 299899 R asparaginase complement(298934..299899) Agrobacterium vitis S4 7380537 YP_002539698.1 CDS Avi_7323 NC_011981.1 299936 300754 R hypothetical protein complement(299936..300754) Agrobacterium vitis S4 7380538 YP_002539699.1 CDS dppC NC_011981.1 300840 301742 R peptide ABC transporter permease complement(300840..301742) Agrobacterium vitis S4 7380539 YP_002539700.1 CDS dppB NC_011981.1 301750 302670 R peptide ABC transporter permease complement(301750..302670) Agrobacterium vitis S4 7380540 YP_002539701.1 CDS dppA NC_011981.1 302806 304359 R ABC transporter substrate binding protein (dipeptide) complement(302806..304359) Agrobacterium vitis S4 7380541 YP_002539702.1 CDS Avi_7329 NC_011981.1 304403 306283 R ABC transporter ATPase complement(304403..306283) Agrobacterium vitis S4 7380542 YP_002539703.1 CDS Avi_7330 NC_011981.1 306321 307262 R transcriptional regulator complement(306321..307262) Agrobacterium vitis S4 7380543 YP_002539704.1 CDS Avi_7332 NC_011981.1 307726 308790 D Transcriptional regulator/sugar kinase 307726..308790 Agrobacterium vitis S4 7380544 YP_002539705.1 CDS xylR NC_011981.1 308759 309997 R transcriptional regulator ROK family complement(308759..309997) Agrobacterium vitis S4 7380545 YP_002539706.1 CDS Avi_7334 NC_011981.1 310077 313100 R alpha-D-mannosidase complement(310077..313100) Agrobacterium vitis S4 7380546 YP_002539707.1 CDS Avi_7335 NC_011981.1 313134 313976 R sugar ABC transporter permease complement(313134..313976) Agrobacterium vitis S4 7380547 YP_002539708.1 CDS Avi_7336 NC_011981.1 313973 314815 R ABC transporter permease complement(313973..314815) Agrobacterium vitis S4 7380548 YP_002539709.1 CDS Avi_7337 NC_011981.1 314967 316262 R ABC transporter substrate-binding protein complement(314967..316262) Agrobacterium vitis S4 7380549 YP_002539710.1 CDS Avi_7338 NC_011981.1 316447 317445 D ABC transporter nucleotide binding/ATPase protein (sugar) 316447..317445 Agrobacterium vitis S4 7380550 YP_002539711.1 CDS attR NC_011981.1 317614 319251 R transacetylase complement(317614..319251) Agrobacterium vitis S4 7380551 YP_002539712.1 CDS Avi_7340 NC_011981.1 319257 321104 R hypothetical protein complement(319257..321104) Agrobacterium vitis S4 7380552 YP_002539713.1 CDS Avi_7341 NC_011981.1 321179 322459 R sugar ABC transporter substrate-binding protein complement(321179..322459) Agrobacterium vitis S4 7380553 YP_002539714.1 CDS Avi_7342 NC_011981.1 322509 323219 R hypothetical protein complement(322509..323219) Agrobacterium vitis S4 7380554 YP_002539715.1 CDS Avi_7343 NC_011981.1 323232 324341 R ABC transporter ATPase complement(323232..324341) Agrobacterium vitis S4 7380555 YP_002539716.1 CDS Avi_7344 NC_011981.1 324356 325528 R Unsaturated glucuronyl hydrolase complement(324356..325528) Agrobacterium vitis S4 7380556 YP_002539717.1 CDS Avi_7346 NC_011981.1 325533 326369 R sugar ABC transporter permease complement(325533..326369) Agrobacterium vitis S4 7380557 YP_002539718.1 CDS Avi_7347 NC_011981.1 326373 327335 R sugar ABC transporter permease complement(326373..327335) Agrobacterium vitis S4 7380558 YP_002539719.1 CDS Avi_7349 NC_011981.1 327547 329352 D hypothetical protein 327547..329352 Agrobacterium vitis S4 7380559 YP_002539720.1 CDS Avi_7350 NC_011981.1 329364 330149 D hypothetical protein 329364..330149 Agrobacterium vitis S4 7380560 YP_002539721.1 CDS Avi_7351 NC_011981.1 330153 331007 R GntR family transcriptional regulator complement(330153..331007) Agrobacterium vitis S4 7380561 YP_002539722.1 CDS ych NC_011981.1 331026 331283 R hypothetical protein complement(331026..331283) Agrobacterium vitis S4 7380562 YP_002539723.1 CDS Avi_7353 NC_011981.1 331392 331832 R hypothetical protein complement(331392..331832) Agrobacterium vitis S4 7380563 YP_002539724.1 CDS Avi_7355 NC_011981.1 332202 333254 D ABC transporter nucleotide binding/ATPase protein (sugars) 332202..333254 Agrobacterium vitis S4 7380564 YP_002539725.1 CDS Avi_7356 NC_011981.1 333642 335015 D ABC transporter, binding protein 333642..335015 Agrobacterium vitis S4 7380565 YP_002539726.1 CDS Avi_7357 NC_011981.1 335160 336269 D sugar ABC transporter permease 335160..336269 Agrobacterium vitis S4 7380566 YP_002539727.1 CDS Avi_7358 NC_011981.1 336280 337200 D ABC transporter permease 336280..337200 Agrobacterium vitis S4 7380567 YP_002539728.1 CDS Avi_7360 NC_011981.1 337242 337697 D hypothetical protein 337242..337697 Agrobacterium vitis S4 7380568 YP_002539729.1 CDS rbsK NC_011981.1 337708 338634 D ribokinase 337708..338634 Agrobacterium vitis S4 7380569 YP_002539730.1 CDS Avi_7362 NC_011981.1 338738 339718 D xylose isomerase 338738..339718 Agrobacterium vitis S4 7380570 YP_002539731.1 CDS Avi_7364 NC_011981.1 339924 340874 D ABC transporter substrate-binding protein 339924..340874 Agrobacterium vitis S4 7380406 YP_002539732.1 CDS rbsA NC_011981.1 340939 342459 D ABC transporter nucleotide binding/ATPase protein (ribose) 340939..342459 Agrobacterium vitis S4 7380407 YP_002539733.1 CDS rbsC NC_011981.1 342479 343456 D ribose ABC transporter permease 342479..343456 Agrobacterium vitis S4 7380408 YP_002539734.1 CDS Avi_7367 NC_011981.1 343453 344328 D involved in rpiB and als operon repression; DNA-binding transcriptional repressor RpiR 343453..344328 Agrobacterium vitis S4 7380409 YP_002539735.1 CDS Avi_7369 NC_011981.1 344325 345224 D ribokinase 344325..345224 Agrobacterium vitis S4 7380410 YP_002539736.1 CDS Avi_7370 NC_011981.1 345322 346077 R transcriptional regulator complement(345322..346077) Agrobacterium vitis S4 7380411 YP_002539737.1 CDS Avi_7371 NC_011981.1 346190 347104 D zinc-binding oxidoreductase 346190..347104 Agrobacterium vitis S4 7380412 YP_002539738.1 CDS Avi_7373 NC_011981.1 347511 348617 D hypothetical protein 347511..348617 Agrobacterium vitis S4 7380413 YP_002539739.1 CDS Avi_7374 NC_011981.1 348707 350341 R ribitol kinase complement(348707..350341) Agrobacterium vitis S4 7380414 YP_002539740.1 CDS rdh NC_011981.1 350398 351126 R ribitol 2-dehydrogenase complement(350398..351126) Agrobacterium vitis S4 7380415 YP_002539741.1 CDS xylH NC_011981.1 351152 352411 R xylose ABC transporter permease complement(351152..352411) Agrobacterium vitis S4 7380416 YP_002539742.1 CDS xylG NC_011981.1 352408 353241 R ABC transporter nucleotide binding/ATPase protein (xylose) complement(352408..353241) Agrobacterium vitis S4 7380417 YP_002539743.1 CDS xylF NC_011981.1 353313 354359 R ABC transporter substrate binding protein (xylose) complement(353313..354359) Agrobacterium vitis S4 7380418 YP_002539744.1 CDS Avi_7379 NC_011981.1 354596 355639 D transcriptional regulator LacI family 354596..355639 Agrobacterium vitis S4 7380419 YP_002539745.1 CDS Avi_7380 NC_011981.1 356152 356562 D hypothetical protein 356152..356562 Agrobacterium vitis S4 7380420 YP_002539746.1 CDS Avi_7381 NC_011981.1 356732 357940 R permease complement(356732..357940) Agrobacterium vitis S4 7380421 YP_002539747.1 CDS Avi_7382 NC_011981.1 358001 358990 R AraC family transcriptional regulator complement(358001..358990) Agrobacterium vitis S4 7380422 YP_002539748.1 CDS nrdH NC_011981.1 359928 360227 D glutaredoxin protein 359928..360227 Agrobacterium vitis S4 7380423 YP_002539749.1 CDS nrdI NC_011981.1 360238 360654 D in Salmonella NrdI has a stimulatory effect on the ribonucleotide reductase activity of NrdH with NrdEF; ribonucleotide reductase stimulatory protein 360238..360654 Agrobacterium vitis S4 7380424 YP_002539750.1 CDS Avi_7387 NC_011981.1 360696 362777 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 360696..362777 Agrobacterium vitis S4 7380425 YP_002539751.1 CDS nrdF NC_011981.1 362792 363781 D B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta 362792..363781 Agrobacterium vitis S4 7380426 YP_002539752.1 CDS Avi_7389 NC_011981.1 364029 364340 R transcriptional regulator complement(364029..364340) Agrobacterium vitis S4 7380427 YP_002539753.1 CDS Avi_7390 NC_011981.1 364439 365530 D xenobiotic reductase A 364439..365530 Agrobacterium vitis S4 7380428 YP_002539754.1 CDS gatA NC_011981.1 366219 367574 D glutamyl-tRNA amidotransferase subunit A 366219..367574 Agrobacterium vitis S4 7380429 YP_002539755.1 CDS Avi_7393 NC_011981.1 367608 368393 D amino acid ABC transporter substrate-binding protein 367608..368393 Agrobacterium vitis S4 7380430 YP_002539756.1 CDS Avi_7394 NC_011981.1 368464 369186 D ABC transporter permease 368464..369186 Agrobacterium vitis S4 7380431 YP_002539757.1 CDS Avi_7395 NC_011981.1 369188 369874 D ABC transporter permease 369188..369874 Agrobacterium vitis S4 7380432 YP_002539758.1 CDS Avi_7396 NC_011981.1 369971 370864 D Transcriptional regulator 369971..370864 Agrobacterium vitis S4 7380433 YP_002539759.1 CDS Avi_7397 NC_011981.1 371039 372187 R Selenocysteine lyase complement(371039..372187) Agrobacterium vitis S4 7380434 YP_002539760.1 CDS Avi_7398 NC_011981.1 372196 373212 R ornithine cyclodeaminase complement(372196..373212) Agrobacterium vitis S4 7380435 YP_002539761.1 CDS Avi_7399 NC_011981.1 373498 374628 D oxidoreductase 373498..374628 Agrobacterium vitis S4 7380436 YP_002539762.1 CDS Avi_7400 NC_011981.1 374625 374975 D hypothetical protein 374625..374975 Agrobacterium vitis S4 7380437 YP_002539763.1 CDS Avi_7402 NC_011981.1 375396 376295 D Transcriptional regulator 375396..376295 Agrobacterium vitis S4 7380438 YP_002539764.1 CDS Avi_7403 NC_011981.1 376370 377011 D hypothetical protein 376370..377011 Agrobacterium vitis S4 7380439 YP_002539765.1 CDS Avi_7405 NC_011981.1 377643 378932 D Acyl-CoA dehydrogenase 377643..378932 Agrobacterium vitis S4 7380440 YP_002539766.1 CDS Avi_7406 NC_011981.1 378983 379618 D 4-hydroxyphenylacetate 3-monooxygenase reductase component 378983..379618 Agrobacterium vitis S4 7380441 YP_002539767.1 CDS Avi_7407 NC_011981.1 379820 382147 D ferrienterobactin-like protein 379820..382147 Agrobacterium vitis S4 7380442 YP_002539768.1 CDS Avi_7409 NC_011981.1 382376 383233 R Transcriptional regulator complement(382376..383233) Agrobacterium vitis S4 7380443 YP_002539769.1 CDS Avi_7410 NC_011981.1 383454 384209 D arylmalonate decarboxylase 383454..384209 Agrobacterium vitis S4 7380444 YP_002539770.1 CDS Avi_7411 NC_011981.1 384226 385377 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 384226..385377 Agrobacterium vitis S4 7380445 YP_002539771.1 CDS Avi_7413 NC_011981.1 385841 387226 D ScoB 385841..387226 Agrobacterium vitis S4 7380446 YP_002539772.1 CDS Avi_7414 NC_011981.1 387340 387768 D hypothetical protein 387340..387768 Agrobacterium vitis S4 7380447 YP_002539773.1 CDS Avi_7416 NC_011981.1 388188 389435 R Permeases of the major facilitator superfamily complement(388188..389435) Agrobacterium vitis S4 7380448 YP_002539774.1 CDS Avi_7417 NC_011981.1 389768 390919 D oxidoreductase 389768..390919 Agrobacterium vitis S4 7380449 YP_002539775.1 CDS Avi_7418 NC_011981.1 391027 391692 D gamma-carboxymuconolactone decarboxylase subunit 391027..391692 Agrobacterium vitis S4 7380450 YP_002539776.1 CDS Avi_7419 NC_011981.1 391694 392398 D hypothetical protein 391694..392398 Agrobacterium vitis S4 7380451 YP_002539777.1 CDS Avi_7421 NC_011981.1 392484 393329 D oxidoreductase 392484..393329 Agrobacterium vitis S4 7380452 YP_002539778.1 CDS Avi_7422 NC_011981.1 393334 393894 D hypothetical protein 393334..393894 Agrobacterium vitis S4 7380453 YP_002539779.1 CDS hpcE NC_011981.1 393954 394808 D fumarylacetoacetate (FAA) hydrolase family protein 393954..394808 Agrobacterium vitis S4 7380454 YP_002539780.1 CDS mhpA NC_011981.1 395057 396568 R catalyzes the formation of 3-(2,3-dihydroxyphenyl)propionate from 3-(3-hydroxyphenyl)propionate; 3-(3-hydroxyphenyl)propionate hydroxylase complement(395057..396568) Agrobacterium vitis S4 7380455 YP_002539781.1 CDS Avi_7426 NC_011981.1 396552 398033 R 2-methylcitrate dehydratase family protein complement(396552..398033) Agrobacterium vitis S4 7380456 YP_002539782.1 CDS Avi_7427 NC_011981.1 398288 398731 D hypothetical protein 398288..398731 Agrobacterium vitis S4 7380457 YP_002539783.1 CDS Avi_7428 NC_011981.1 398827 399360 D ring-cleavage extradiol dioxygenase 398827..399360 Agrobacterium vitis S4 7380458 YP_002539784.1 CDS Avi_7430 NC_011981.1 399505 400440 D fumarylacetoacetate (FAA) hydrolase family protein 399505..400440 Agrobacterium vitis S4 7380459 YP_002539785.1 CDS Avi_7431 NC_011981.1 400596 401369 D Transcriptional regulator 400596..401369 Agrobacterium vitis S4 7380460 YP_002539786.1 CDS Avi_7432 NC_011981.1 401388 401936 D hypothetical protein 401388..401936 Agrobacterium vitis S4 7380461 YP_002539787.1 CDS Avi_7433 NC_011981.1 401961 403052 R branched-chain amino acid ABC transporter permease complement(401961..403052) Agrobacterium vitis S4 7380462 YP_002539788.1 CDS Avi_7434 NC_011981.1 403063 403926 R branched-chain amino acid ABC transporter permease complement(403063..403926) Agrobacterium vitis S4 7380463 YP_002539789.1 CDS Avi_7436 NC_011981.1 403913 404638 R ABC transporter complement(403913..404638) Agrobacterium vitis S4 7380464 YP_002539790.1 CDS Avi_7437 NC_011981.1 404635 405354 R ABC transporter ATPase complement(404635..405354) Agrobacterium vitis S4 7380465 YP_002539791.1 CDS Avi_7438 NC_011981.1 405413 406807 R ABC transporter substrate-binding protein complement(405413..406807) Agrobacterium vitis S4 7380466 YP_002539792.1 CDS Avi_7439 NC_011981.1 407029 408786 R 2,4-dichlorophenol hydroxylase complement(407029..408786) Agrobacterium vitis S4 7380467 YP_002539793.1 CDS macA NC_011981.1 408815 409888 R maleylacetate reductase complement(408815..409888) Agrobacterium vitis S4 7380468 YP_002539794.1 CDS Avi_7441 NC_011981.1 409990 410940 D LysR family transcriptional regulator 409990..410940 Agrobacterium vitis S4 7380469 YP_002539795.1 CDS Avi_7442 NC_011981.1 410951 411283 R hypothetical protein complement(410951..411283) Agrobacterium vitis S4 7380470 YP_002539796.1 CDS Avi_7443 NC_011981.1 411297 412133 R dioxygenase complement(411297..412133) Agrobacterium vitis S4 7380471 YP_002539797.1 CDS Avi_7446 NC_011981.1 413058 416144 R alpha-D-mannosidase complement(413058..416144) Agrobacterium vitis S4 7380472 YP_002539798.1 CDS Avi_7450 NC_011981.1 416575 417717 D extracellular solute-binding protein 416575..417717 Agrobacterium vitis S4 7380473 YP_002539799.1 CDS potB NC_011981.1 417721 418590 D ABC transporter permease 417721..418590 Agrobacterium vitis S4 7380474 YP_002539800.1 CDS Avi_7452 NC_011981.1 418593 419408 D ABC transporter permease 418593..419408 Agrobacterium vitis S4 7380475 YP_002539801.1 CDS afuC NC_011981.1 419448 420491 D ABC transporter nucleotide binding/ATPase protein (iron) 419448..420491 Agrobacterium vitis S4 7380476 YP_002539802.1 CDS Avi_7454 NC_011981.1 420492 421757 R transcriptional regulator ROK family complement(420492..421757) Agrobacterium vitis S4 7380477 YP_002539803.1 CDS Avi_7455 NC_011981.1 421804 422682 R hypothetical protein complement(421804..422682) Agrobacterium vitis S4 7380478 YP_002539804.1 CDS Avi_7457 NC_011981.1 422937 424013 D hypothetical protein 422937..424013 Agrobacterium vitis S4 7380479 YP_002539805.1 CDS Avi_7458 NC_011981.1 424178 424789 R hypothetical protein complement(424178..424789) Agrobacterium vitis S4 7380480 YP_002539806.1 CDS Avi_7459 NC_011981.1 424795 425244 R transcriptional regulator complement(424795..425244) Agrobacterium vitis S4 7380481 YP_002539807.1 CDS Avi_7461 NC_011981.1 425400 425609 R hypothetical protein complement(425400..425609) Agrobacterium vitis S4 7380482 YP_002539808.1 CDS Avi_7466 NC_011981.1 427750 429228 R hypothetical protein complement(427750..429228) Agrobacterium vitis S4 7380484 YP_002539809.1 CDS Avi_7467 NC_011981.1 429225 430457 R hypothetical protein complement(429225..430457) Agrobacterium vitis S4 7380485 YP_002539810.1 CDS Avi_7470 NC_011981.1 430710 431300 D transposase 430710..431300 Agrobacterium vitis S4 7380487 YP_002539811.1 CDS Avi_7472 NC_011981.1 431762 432781 D transcriptional regulator LacI family 431762..432781 Agrobacterium vitis S4 7380030 YP_002539812.1 CDS Avi_7473 NC_011981.1 432816 433775 D ABC transporter ATPase 432816..433775 Agrobacterium vitis S4 7380031 YP_002539813.1 CDS Avi_7475 NC_011981.1 433772 434587 D ABC transporter ATPase 433772..434587 Agrobacterium vitis S4 7380032 YP_002539814.1 CDS Avi_7476 NC_011981.1 434584 435588 D sugar ABC transporter permease 434584..435588 Agrobacterium vitis S4 7380033 YP_002539815.1 CDS Avi_7477 NC_011981.1 435592 436659 D resiniferatoxin-binding phosphotriesterase-related protein 435592..436659 Agrobacterium vitis S4 7380034 YP_002539816.1 CDS Avi_7478 NC_011981.1 436690 437460 D hypothetical protein 436690..437460 Agrobacterium vitis S4 7380035 YP_002539817.1 CDS rbsK NC_011981.1 437466 438362 R ribokinase complement(437466..438362) Agrobacterium vitis S4 7380036 YP_002539818.1 CDS Avi_7481 NC_011981.1 438409 439251 D hypothetical protein 438409..439251 Agrobacterium vitis S4 7380037 YP_002539819.1 CDS amaB NC_011981.1 439257 440552 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 439257..440552 Agrobacterium vitis S4 7380038 YP_002539820.1 CDS Avi_7483 NC_011981.1 440590 443673 R Acr family transporter complement(440590..443673) Agrobacterium vitis S4 7380039 YP_002539821.1 CDS Avi_7484 NC_011981.1 443670 444725 R HlyD family secretion protein complement(443670..444725) Agrobacterium vitis S4 7380040 YP_002539822.1 CDS nodT NC_011981.1 444788 446260 R nodulation protein T precursor complement(444788..446260) Agrobacterium vitis S4 7380041 YP_002539823.1 CDS chvI NC_011981.1 446416 447102 D two component response regulator 446416..447102 Agrobacterium vitis S4 7380042 YP_002539824.1 CDS Avi_7490 NC_011981.1 447102 448373 D Signal transduction histidine kinase 447102..448373 Agrobacterium vitis S4 7380043 YP_002539825.1 CDS gstR NC_011981.1 449507 450397 R LysR family transcriptional regulator complement(449507..450397) Agrobacterium vitis S4 7380046 YP_002539826.1 CDS Avi_7498 NC_011981.1 450527 451267 R hypothetical protein complement(450527..451267) Agrobacterium vitis S4 7380047 YP_002539827.1 CDS Avi_7500 NC_011981.1 451681 452448 R transposase complement(451681..452448) Agrobacterium vitis S4 7380048 YP_002539828.1 CDS pecM NC_011981.1 452804 453727 R regulator protein pecM complement(452804..453727) Agrobacterium vitis S4 7380049 YP_002539829.1 CDS orfB NC_011981.1 454438 455295 R IS3 family transposase complement(454438..455295) Agrobacterium vitis S4 7380050 YP_002539830.1 CDS Avi_7505 NC_011981.1 455324 455677 R hypothetical protein complement(455324..455677) Agrobacterium vitis S4 7380051 YP_002539831.1 CDS nocM NC_011981.1 455701 456381 R nopaline ABC transporter permease complement(455701..456381) Agrobacterium vitis S4 7380052 YP_002539832.1 CDS nocQ NC_011981.1 456383 457096 R nopaline ABC transporter permease complement(456383..457096) Agrobacterium vitis S4 7380053 YP_002539833.1 CDS Avi_7508 NC_011981.1 457157 457975 R amino acid ABC transporter substrate-binding protein complement(457157..457975) Agrobacterium vitis S4 7380054 YP_002539834.1 CDS nocP NC_011981.1 458014 458790 R ABC transporter nucleotide binding/ATPase protein (nopaline) complement(458014..458790) Agrobacterium vitis S4 7380055 YP_002539835.1 CDS bioA NC_011981.1 458809 460212 R hypothetical protein complement(458809..460212) Agrobacterium vitis S4 7380056 YP_002539836.1 CDS Avi_7513 NC_011981.1 460437 460913 D transcriptional regulator AsnC family 460437..460913 Agrobacterium vitis S4 7380057 YP_002539837.1 CDS Avi_7514 NC_011981.1 461338 461610 D transposase 461338..461610 Agrobacterium vitis S4 7380058 YP_002539838.1 CDS Avi_7515 NC_011981.1 462221 463141 D carboxyphosphonoenolpyruvate phosphonomutase (CPEP Phosphonomutase) 462221..463141 Agrobacterium vitis S4 7380059 YP_002539839.1 CDS Avi_7516 NC_011981.1 463236 464933 D ABC transporter substrate binding protein (oligopeptide) 463236..464933 Agrobacterium vitis S4 7380060 YP_002539840.1 CDS dppB NC_011981.1 464930 465883 D peptide ABC transporter permease 464930..465883 Agrobacterium vitis S4 7380061 YP_002539841.1 CDS dppC NC_011981.1 465891 466778 D peptide ABC transporter permease 465891..466778 Agrobacterium vitis S4 7380062 YP_002539842.1 CDS Avi_7520 NC_011981.1 466778 467803 D ABC transporter nucleotide binding/ATPase protein (oligopeptide) 466778..467803 Agrobacterium vitis S4 7380063 YP_002539843.1 CDS moaD NC_011981.1 467800 468792 D ABC transporter ATPase 467800..468792 Agrobacterium vitis S4 7380064 YP_002539844.1 CDS Avi_7524 NC_011981.1 468870 470054 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 468870..470054 Agrobacterium vitis S4 7380065 YP_002539845.1 CDS nocR NC_011981.1 470060 471931 R LysR family transcriptional regulator complement(470060..471931) Agrobacterium vitis S4 7380066 YP_002539846.1 CDS Avi_7527 NC_011981.1 472246 473613 D 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 472246..473613 Agrobacterium vitis S4 7380067 YP_002539847.1 CDS Avi_7528 NC_011981.1 473610 474185 D 3-polyprenyl-4-hydroxybenzoate decarboxylase 473610..474185 Agrobacterium vitis S4 7380068 YP_002539848.1 CDS dppA NC_011981.1 474294 475919 D ABC transporter substrate binding protein (dipeptide) 474294..475919 Agrobacterium vitis S4 7380069 YP_002539849.1 CDS Avi_7530 NC_011981.1 475985 476917 D carboxyphosphonoenolpyruvate phosphonomutase 475985..476917 Agrobacterium vitis S4 7380070 YP_002539850.1 CDS dppB NC_011981.1 476889 478061 D peptide ABC transporter permease 476889..478061 Agrobacterium vitis S4 7380071 YP_002539851.1 CDS dppC NC_011981.1 478058 478978 D peptide ABC transporter permease 478058..478978 Agrobacterium vitis S4 7380072 YP_002539852.1 CDS Avi_7533 NC_011981.1 478980 479993 D ABC transporter nucleotide binding/ATPase protein (oligopeptide) 478980..479993 Agrobacterium vitis S4 7380073 YP_002539853.1 CDS Avi_7536 NC_011981.1 479986 480963 D ABC transporter nucleotide binding/ATPase protein (oligopeptide) 479986..480963 Agrobacterium vitis S4 7380074 YP_002539854.1 CDS Avi_7537 NC_011981.1 480974 481495 D hypothetical protein 480974..481495 Agrobacterium vitis S4 7380075 YP_002539855.1 CDS Avi_7538 NC_011981.1 481492 482868 D allantoinase protein 481492..482868 Agrobacterium vitis S4 7380076 YP_002539856.1 CDS amaB NC_011981.1 482873 484132 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 482873..484132 Agrobacterium vitis S4 7380077 YP_002539857.1 CDS hutH NC_011981.1 484241 485854 D histidine ammonia-lyase 484241..485854 Agrobacterium vitis S4 7380078 YP_002539858.1 CDS Avi_7541 NC_011981.1 485953 486312 D transposase 485953..486312 Agrobacterium vitis S4 7380079 YP_002539859.1 CDS Avi_7543 NC_011981.1 486526 488442 R hypothetical protein complement(486526..488442) Agrobacterium vitis S4 7380080 YP_002539860.1 CDS Avi_7544 NC_011981.1 488445 489587 R von Willebrand factor type A (vWA) domain-containing protein complement(488445..489587) Agrobacterium vitis S4 7380081 YP_002539861.1 CDS aceF NC_011981.1 489584 493573 R dihydrolipoamide acetyltransferase complement(489584..493573) Agrobacterium vitis S4 7380082 YP_002539862.1 CDS Avi_7548 NC_011981.1 493596 495890 R hypothetical protein complement(493596..495890) Agrobacterium vitis S4 7380083 YP_002539863.1 CDS Avi_7549 NC_011981.1 495898 496989 R moxR-like ATPase complement(495898..496989) Agrobacterium vitis S4 7380084 YP_002539864.1 CDS purA NC_011981.1 497289 498467 R adenylosuccinate synthetase complement(497289..498467) Agrobacterium vitis S4 7380085 YP_002539865.1 CDS Avi_7551 NC_011981.1 498464 499396 R hypothetical protein complement(498464..499396) Agrobacterium vitis S4 7380086 YP_002539866.1 CDS Avi_7552 NC_011981.1 499389 500414 R hypothetical protein complement(499389..500414) Agrobacterium vitis S4 7380087 YP_002539867.1 CDS Avi_7553 NC_011981.1 500590 501249 D hypothetical protein 500590..501249 Agrobacterium vitis S4 7380088 YP_002539868.1 CDS Avi_7554 NC_011981.1 501813 502559 R hypothetical protein complement(501813..502559) Agrobacterium vitis S4 7380089 YP_002539869.1 CDS vgrG NC_011981.1 503466 505427 D vgrG protein 503466..505427 Agrobacterium vitis S4 7380090 YP_002539870.1 CDS Avi_7558 NC_011981.1 505592 506602 D hypothetical protein 505592..506602 Agrobacterium vitis S4 7380091 YP_002539871.1 CDS Avi_7559 NC_011981.1 506592 507974 D phospholipase A1 506592..507974 Agrobacterium vitis S4 7380092 YP_002539872.1 CDS Avi_7560 NC_011981.1 507987 509033 D hypothetical protein 507987..509033 Agrobacterium vitis S4 7380093 YP_002539873.1 CDS Avi_7561 NC_011981.1 509109 509534 D hypothetical protein 509109..509534 Agrobacterium vitis S4 7380094 YP_002539874.1 CDS Avi_7563 NC_011981.1 510082 510786 R hypothetical protein complement(510082..510786) Agrobacterium vitis S4 7380095 YP_002539875.1 CDS Avi_7564 NC_011981.1 510783 511328 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(510783..511328) Agrobacterium vitis S4 7380096 YP_002539876.1 CDS Avi_7565 NC_011981.1 511533 512321 D hypothetical protein 511533..512321 Agrobacterium vitis S4 7380097 YP_002539877.1 CDS tnp NC_011981.1 512660 513391 D transposase 512660..513391 Agrobacterium vitis S4 7380098 YP_002539878.1 CDS Avi_7569 NC_011981.1 513930 514610 R hypothetical protein complement(513930..514610) Agrobacterium vitis S4 7380099 YP_002539879.1 CDS Avi_7570 NC_011981.1 514622 515998 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(514622..515998) Agrobacterium vitis S4 7380100 YP_002539880.1 CDS Avi_7571 NC_011981.1 515995 517008 R similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase-like protein complement(515995..517008) Agrobacterium vitis S4 7380101 YP_002539881.1 CDS Avi_7572 NC_011981.1 517027 519432 R glucan 1,4-alpha-glucosidase complement(517027..519432) Agrobacterium vitis S4 7380102 YP_002539882.1 CDS Avi_7573 NC_011981.1 519622 521025 R GntR family transcriptional regulator complement(519622..521025) Agrobacterium vitis S4 7380103 YP_002539883.1 CDS Avi_7575 NC_011981.1 521364 521846 D hypothetical protein 521364..521846 Agrobacterium vitis S4 7380104 YP_002539884.1 CDS Avi_7576 NC_011981.1 521926 522969 D amidohydrolase 521926..522969 Agrobacterium vitis S4 7380105 YP_002539885.1 CDS Avi_7577 NC_011981.1 523043 524014 D Biotin synthase-related enzyme 523043..524014 Agrobacterium vitis S4 7380106 YP_002539886.1 CDS Avi_7578 NC_011981.1 524011 524553 D GCN5 family N-acetyltransferase 524011..524553 Agrobacterium vitis S4 7380107 YP_002539887.1 CDS Avi_7579 NC_011981.1 524556 525542 D selenophosphate synthetase-related protein 524556..525542 Agrobacterium vitis S4 7380108 YP_002539888.1 CDS Avi_7580 NC_011981.1 525563 526696 D WbdA; mannosyl transferase A 525563..526696 Agrobacterium vitis S4 7380109 YP_002539889.1 CDS Avi_7582 NC_011981.1 526698 526976 D hypothetical protein 526698..526976 Agrobacterium vitis S4 7380110 YP_002539890.1 CDS Avi_7583 NC_011981.1 526988 528259 D flavin-containing monooxygenase 526988..528259 Agrobacterium vitis S4 7380241 YP_002539891.1 CDS Avi_7584 NC_011981.1 528320 529129 D yype IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV) B subunit 528320..529129 Agrobacterium vitis S4 7380242 YP_002539892.1 CDS Avi_7585 NC_011981.1 529444 530520 D Catalase 529444..530520 Agrobacterium vitis S4 7380243 YP_002539893.1 CDS fdhF NC_011981.1 530551 532887 D formate dehydrogenase H alpha subunit 530551..532887 Agrobacterium vitis S4 7380244 YP_002539894.1 CDS Avi_7587 NC_011981.1 532931 533443 R acetyltransferase complement(532931..533443) Agrobacterium vitis S4 7380245 YP_002539895.1 CDS Avi_7588 NC_011981.1 533454 534329 R hypothetical protein complement(533454..534329) Agrobacterium vitis S4 7380246 YP_002539896.1 CDS Avi_7589 NC_011981.1 534339 535175 R hypothetical protein complement(534339..535175) Agrobacterium vitis S4 7380247 YP_002539897.1 CDS Avi_7590 NC_011981.1 535272 536615 R ABC transporter substrate binding protein (sugar) complement(535272..536615) Agrobacterium vitis S4 7380248 YP_002539898.1 CDS Avi_7591 NC_011981.1 536612 537439 R ABC transporter permease complement(536612..537439) Agrobacterium vitis S4 7380249 YP_002539899.1 CDS Avi_7592 NC_011981.1 537439 538359 R ABC transporter complement(537439..538359) Agrobacterium vitis S4 7380250 YP_002539900.1 CDS Avi_7593 NC_011981.1 538343 539536 R ABC transporter ATPase complement(538343..539536) Agrobacterium vitis S4 7380251 YP_002539901.1 CDS Avi_7595 NC_011981.1 539865 540536 D TetR family transcriptional regulator 539865..540536 Agrobacterium vitis S4 7380252 YP_002539902.1 CDS prxC NC_011981.1 540758 541576 D non-heme chloroperoxidase 540758..541576 Agrobacterium vitis S4 7380253 YP_002539903.1 CDS Avi_7599 NC_011981.1 541652 542314 R hypothetical protein complement(541652..542314) Agrobacterium vitis S4 7380254 YP_002539904.1 CDS pepQ NC_011981.1 542316 543740 R proline dipeptidase complement(542316..543740) Agrobacterium vitis S4 7380255 YP_002539905.1 CDS Avi_7601 NC_011981.1 543769 544590 R ABC transporter permease complement(543769..544590) Agrobacterium vitis S4 7380256 YP_002539906.1 CDS Avi_7602 NC_011981.1 544583 545410 R ABC transporter permease complement(544583..545410) Agrobacterium vitis S4 7380257 YP_002539907.1 CDS Avi_7603 NC_011981.1 545420 546460 R ABC transporter substrate-binding protein complement(545420..546460) Agrobacterium vitis S4 7380258 YP_002539908.1 CDS Avi_7604 NC_011981.1 546481 547722 R ABC transporter ATPase complement(546481..547722) Agrobacterium vitis S4 7380259 YP_002539909.1 CDS Avi_7606 NC_011981.1 548168 549157 D amino acid ABC transporter substrate-binding protein 548168..549157 Agrobacterium vitis S4 7380260 YP_002539910.1 CDS Avi_7608 NC_011981.1 549161 550033 D amino acid ABC transporter permease 549161..550033 Agrobacterium vitis S4 7380261 YP_002539911.1 CDS Avi_7610 NC_011981.1 550112 551242 D hypothetical protein 550112..551242 Agrobacterium vitis S4 7380262 YP_002539912.1 CDS Avi_7611 NC_011981.1 551525 552277 D GntR family transcriptional regulator 551525..552277 Agrobacterium vitis S4 7380263 YP_002539913.1 CDS Avi_7612 NC_011981.1 552863 553261 R Inhibits transcription at high concentrations of nickel; nickel responsive regulator complement(552863..553261) Agrobacterium vitis S4 7380264 YP_002539914.1 CDS nikA NC_011981.1 553410 554990 D nickel ABC transporter periplasmic nickel-binding protein 553410..554990 Agrobacterium vitis S4 7380265 YP_002539915.1 CDS nikB NC_011981.1 554994 555938 D with NikACDE is involved in nickel transport into the cell; nickel transporter permease NikB 554994..555938 Agrobacterium vitis S4 7380266 YP_002539916.1 CDS nikC NC_011981.1 555935 556810 D with NikABDE is involved in nickel transport into the cell; nickel transporter permease NikC 555935..556810 Agrobacterium vitis S4 7380267 YP_002539917.1 CDS nikD NC_011981.1 556807 557595 D with NikABCE is involved in nickel transport into the cell; nickel transporter ATP-binding protein NikD 556807..557595 Agrobacterium vitis S4 7380268 YP_002539918.1 CDS nikE NC_011981.1 557592 558386 D with NikABCD is involved with nickel transport into the cell; nickel transporter ATP-binding protein NikE 557592..558386 Agrobacterium vitis S4 7380269 YP_002539919.1 CDS Avi_7619 NC_011981.1 558560 558955 D hypothetical protein 558560..558955 Agrobacterium vitis S4 7380270 YP_002539920.1 CDS fnrN NC_011981.1 559070 559768 D transcriptional activator Crp family 559070..559768 Agrobacterium vitis S4 7380271 YP_002539921.1 CDS Avi_7622 NC_011981.1 559787 561076 D ABC transporter substrate binding protein (iron) 559787..561076 Agrobacterium vitis S4 7380272 YP_002539922.1 CDS Avi_7623 NC_011981.1 561073 562137 D Fe3+ ABC transporter permease 561073..562137 Agrobacterium vitis S4 7380273 YP_002539923.1 CDS Avi_7625 NC_011981.1 562134 562919 D ABC transporter 562134..562919 Agrobacterium vitis S4 7380274 YP_002539924.1 CDS Avi_7626 NC_011981.1 562916 563839 D hypothetical protein 562916..563839 Agrobacterium vitis S4 7380275 YP_002539925.1 CDS sco1 NC_011981.1 563836 564495 D electron transport protein 563836..564495 Agrobacterium vitis S4 7380276 YP_002539926.1 CDS Avi_7628 NC_011981.1 564492 565277 D intracellular protease/amidase 564492..565277 Agrobacterium vitis S4 7380277 YP_002539927.1 CDS moaA NC_011981.1 565611 566639 R molybdenum cofactor biosynthesis protein A complement(565611..566639) Agrobacterium vitis S4 7380278 YP_002539928.1 CDS Avi_7630 NC_011981.1 566633 567988 R hypothetical protein complement(566633..567988) Agrobacterium vitis S4 7380279 YP_002539929.1 CDS fdxA NC_011981.1 567985 568290 R ferredoxin complement(567985..568290) Agrobacterium vitis S4 7380280 YP_002539930.1 CDS Avi_7633 NC_011981.1 568363 570489 R reductase complement(568363..570489) Agrobacterium vitis S4 7380281 YP_002539931.1 CDS Avi_7634 NC_011981.1 570675 571589 D AraC family transcriptional regulator 570675..571589 Agrobacterium vitis S4 7380282 YP_002539932.1 CDS Avi_7635 NC_011981.1 572212 573078 D AraC family transcriptional regulator 572212..573078 Agrobacterium vitis S4 7380283 YP_002539933.1 CDS Avi_7637 NC_011981.1 573139 574389 R Acyl-CoA dehydrogenase complement(573139..574389) Agrobacterium vitis S4 7380284 YP_002539934.1 CDS Avi_7641 NC_011981.1 574970 576937 D hypothetical protein 574970..576937 Agrobacterium vitis S4 7380285 YP_002539935.1 CDS Avi_7643 NC_011981.1 577013 578740 R sensory methylation accepting chemotaxis protein complement(577013..578740) Agrobacterium vitis S4 7380286 YP_002539936.1 CDS Avi_7645 NC_011981.1 579230 580588 D hypothetical protein 579230..580588 Agrobacterium vitis S4 7380287 YP_002539937.1 CDS Avi_7646 NC_011981.1 580634 582223 D TPR repeat-containing protein 580634..582223 Agrobacterium vitis S4 7380288 YP_002539938.1 CDS acoR NC_011981.1 582859 584745 D transcriptional regulator 582859..584745 Agrobacterium vitis S4 7380289 YP_002539939.1 CDS Avi_7649 NC_011981.1 584910 585983 D zinc-binding dehydrogenase 584910..585983 Agrobacterium vitis S4 7380290 YP_002539940.1 CDS Avi_7650 NC_011981.1 586099 587901 D flavin-containing monooxygenase 586099..587901 Agrobacterium vitis S4 7380291 YP_002539941.1 CDS menG NC_011981.1 588203 588877 R demethylmenaquinone methyltransferase complement(588203..588877) Agrobacterium vitis S4 7380292 YP_002539942.1 CDS Avi_7653 NC_011981.1 589053 589952 D Transcriptional regulator 589053..589952 Agrobacterium vitis S4 7380293 YP_002539943.1 CDS accB NC_011981.1 590128 590547 D acetyl-CoA carboxylase biotin carboxyl carrier protein 590128..590547 Agrobacterium vitis S4 7380294 YP_002539944.1 CDS accC NC_011981.1 590544 591917 D acetyl-CoA carboxylase biotin carboxylase 590544..591917 Agrobacterium vitis S4 7380295 YP_002539945.1 CDS Avi_7656 NC_011981.1 591914 592357 D hypothetical protein 591914..592357 Agrobacterium vitis S4 7380296 YP_002539946.1 CDS Avi_7657 NC_011981.1 592357 593067 D hypothetical protein 592357..593067 Agrobacterium vitis S4 7380297 YP_002539947.1 CDS Avi_7658 NC_011981.1 593064 594062 D hypothetical protein 593064..594062 Agrobacterium vitis S4 7380298 YP_002539948.1 CDS Avi_7659 NC_011981.1 594078 594845 D LamB/YcsF family protein 594078..594845 Agrobacterium vitis S4 7380299 YP_002539949.1 CDS aatA NC_011981.1 594894 596108 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 594894..596108 Agrobacterium vitis S4 7380300 YP_002539950.1 CDS nac NC_011981.1 596173 597078 R LysR family transcriptional regulator complement(596173..597078) Agrobacterium vitis S4 7380301 YP_002539951.1 CDS Avi_7662 NC_011981.1 597318 598070 D short-chain dehydrogenase 597318..598070 Agrobacterium vitis S4 7380302 YP_002539952.1 CDS Avi_7663 NC_011981.1 598067 598774 D amino acid ABC transporter permease 598067..598774 Agrobacterium vitis S4 7380303 YP_002539953.1 CDS Avi_7664 NC_011981.1 598771 599523 D amino acid ABC transporter permease 598771..599523 Agrobacterium vitis S4 7380304 YP_002539954.1 CDS Avi_7665 NC_011981.1 599529 600296 D ABC transporter ATPase 599529..600296 Agrobacterium vitis S4 7380305 YP_002539955.1 CDS Avi_7667 NC_011981.1 600370 601209 D amino acid ABC transporter substrate-binding protein 600370..601209 Agrobacterium vitis S4 7380306 YP_002539956.1 CDS Avi_7669 NC_011981.1 601422 601793 D transposase 601422..601793 Agrobacterium vitis S4 7380307 YP_002539957.1 CDS Avi_7671 NC_011981.1 601790 602185 D transposase 601790..602185 Agrobacterium vitis S4 7380308 YP_002539958.1 CDS Avi_7673 NC_011981.1 602286 602615 R methyl-accepting chemotaxis protein complement(602286..602615) Agrobacterium vitis S4 7380309 YP_002539959.1 CDS Avi_7674 NC_011981.1 602711 604411 R oxidoreductase complement(602711..604411) Agrobacterium vitis S4 7380310 YP_002539960.1 CDS Avi_7675 NC_011981.1 604414 605730 R hypothetical protein complement(604414..605730) Agrobacterium vitis S4 7380311 YP_002539961.1 CDS Avi_7676 NC_011981.1 605730 607205 R FAD dependent oxidoreductase complement(605730..607205) Agrobacterium vitis S4 7380312 YP_002539962.1 CDS Avi_7677 NC_011981.1 607733 608221 D hypothetical protein 607733..608221 Agrobacterium vitis S4 7380313 YP_002539963.1 CDS Avi_7679 NC_011981.1 608583 609776 D Permeases of the major facilitator superfamily 608583..609776 Agrobacterium vitis S4 7380314 YP_002539964.1 CDS Avi_7680 NC_011981.1 609978 611372 D porin B 609978..611372 Agrobacterium vitis S4 7380315 YP_002539965.1 CDS Avi_7681 NC_011981.1 611605 612105 R CbaR complement(611605..612105) Agrobacterium vitis S4 7380316 YP_002539966.1 CDS Avi_7682 NC_011981.1 612135 613373 R ferredoxin reductase complement(612135..613373) Agrobacterium vitis S4 7380317 YP_002539967.1 CDS Avi_7683 NC_011981.1 613702 614919 R cytochrome P450 hydroxylase complement(613702..614919) Agrobacterium vitis S4 7380318 YP_002539968.1 CDS Avi_7685 NC_011981.1 615296 615505 R transposase complement(615296..615505) Agrobacterium vitis S4 7380319 YP_002539969.1 CDS attK NC_011981.1 615820 617247 R NAD-dependent succinate aldehyde dehydrogenase complement(615820..617247) Agrobacterium vitis S4 7380320 YP_002539970.1 CDS fadD NC_011981.1 617309 618811 R long-chain-fatty-acid-CoA-ligase complement(617309..618811) Agrobacterium vitis S4 7380321 YP_002539971.1 CDS Avi_7688 NC_011981.1 619051 620067 R transcriptional regulatory protein complement(619051..620067) Agrobacterium vitis S4 7380322 YP_002539972.1 CDS mccB NC_011981.1 620258 621793 D 3-methylcrotonoyl-CoA carboxylase beta subunit 620258..621793 Agrobacterium vitis S4 7380323 YP_002539973.1 CDS Avi_7690 NC_011981.1 621801 622601 D Enoyl-CoA hydratase/isomerase family protein 621801..622601 Agrobacterium vitis S4 7380193 YP_002539974.1 CDS accC NC_011981.1 622613 624601 D acetyl-CoA carboxylase biotin carboxylase 622613..624601 Agrobacterium vitis S4 7380194 YP_002539975.1 CDS hmgL NC_011981.1 624612 625535 D hydroxymethylglutaryl-CoA lyase 624612..625535 Agrobacterium vitis S4 7380195 YP_002539976.1 CDS Avi_7693 NC_011981.1 626117 626932 R transcriptional regulator MerR family complement(626117..626932) Agrobacterium vitis S4 7380196 YP_002539977.1 CDS argD NC_011981.1 627075 628355 D catalyzes the formation of succinate semialdehyde and glutamate from 4-aminobutanoate and 2-oxoglutarate; 4-aminobutyrate aminotransferase 627075..628355 Agrobacterium vitis S4 7380197 YP_002539978.1 CDS Avi_7695 NC_011981.1 628382 628708 R hypothetical protein complement(628382..628708) Agrobacterium vitis S4 7380198 YP_002539979.1 CDS Avi_7698 NC_011981.1 629087 630115 D IS1111A/IS1328/IS1533 family transposase 629087..630115 Agrobacterium vitis S4 7380200 YP_002539980.1 CDS orfB NC_011981.1 630217 631296 R IS3 family transposase complement(630217..631296) Agrobacterium vitis S4 7380201 YP_002539981.1 CDS repA NC_011982.1 136 1251 D replication protein A 136..1251 Agrobacterium vitis S4 7365286 YP_002539982.1 CDS repB NC_011982.1 1336 2331 D replication protein B 1336..2331 Agrobacterium vitis S4 7365133 YP_002539983.1 CDS repC NC_011982.1 2487 3731 D replication initiation protein RepC 2487..3731 Agrobacterium vitis S4 7365134 YP_002539984.1 CDS Avi_8003 NC_011982.1 3966 5258 D hypothetical protein 3966..5258 Agrobacterium vitis S4 7365135 YP_002539985.1 CDS Avi_8004 NC_011982.1 5296 6183 R hypothetical protein complement(5296..6183) Agrobacterium vitis S4 7365136 YP_002539986.1 CDS Avi_8005 NC_011982.1 6341 7270 D hypothetical protein 6341..7270 Agrobacterium vitis S4 7365137 YP_002539987.1 CDS Avi_8006 NC_011982.1 7357 8493 R integrase protein complement(7357..8493) Agrobacterium vitis S4 7365138 YP_002539988.1 CDS Avi_8008 NC_011982.1 9562 10257 D hypothetical protein 9562..10257 Agrobacterium vitis S4 7365139 YP_002539989.1 CDS Avi_8010 NC_011982.1 10347 10919 R hypothetical protein complement(10347..10919) Agrobacterium vitis S4 7365140 YP_002539990.1 CDS Avi_8011 NC_011982.1 11011 11868 D transposase protein 11011..11868 Agrobacterium vitis S4 7365141 YP_002539991.1 CDS Avi_8012 NC_011982.1 11908 12624 D transposase protein 11908..12624 Agrobacterium vitis S4 7365142 YP_002539992.1 CDS Avi_8013 NC_011982.1 12803 13006 D hypothetical protein 12803..13006 Agrobacterium vitis S4 7365143 YP_002539993.1 CDS Avi_8014 NC_011982.1 13035 13523 D hypothetical protein 13035..13523 Agrobacterium vitis S4 7365144 YP_002539994.1 CDS Avi_8015 NC_011982.1 13818 14705 D Ku protein 13818..14705 Agrobacterium vitis S4 7365145 YP_002539995.1 CDS Avi_8016 NC_011982.1 14709 15530 D Ku protein 14709..15530 Agrobacterium vitis S4 7365146 YP_002539996.1 CDS ligD NC_011982.1 15594 18275 R catalyzes the ATP dependent formation of a phosphodiester at the site of a single-strand break in duplex DNA; ATP-dependent DNA ligase complement(15594..18275) Agrobacterium vitis S4 7365147 YP_002539997.1 CDS Avi_8018 NC_011982.1 18618 19502 R transposase complement(18618..19502) Agrobacterium vitis S4 7365148 YP_002539998.1 CDS Avi_8019 NC_011982.1 19976 20953 D dehydrogenase/flavin-dependent oxidoreductase protein 19976..20953 Agrobacterium vitis S4 7365149 YP_002539999.1 CDS Avi_8020 NC_011982.1 21013 22674 D trehalose synthase 21013..22674 Agrobacterium vitis S4 7365150 YP_002540000.1 CDS Avi_8022 NC_011982.1 23158 23997 R hypothetical protein complement(23158..23997) Agrobacterium vitis S4 7365151 YP_002540001.1 CDS Avi_8025 NC_011982.1 24955 26739 D sensory methylation accepting chemotaxis protein 24955..26739 Agrobacterium vitis S4 7365153 YP_002540002.1 CDS Avi_8027 NC_011982.1 27093 27371 R HNS-type DNA binding protein complement(27093..27371) Agrobacterium vitis S4 7365154 YP_002540003.1 CDS nolR NC_011982.1 28128 28448 D transcriptional regulator ArsR family 28128..28448 Agrobacterium vitis S4 7365155 YP_002540004.1 CDS Avi_8032 NC_011982.1 29340 30140 D potential exonuclease 29340..30140 Agrobacterium vitis S4 7365158 YP_002540005.1 CDS tnp NC_011982.1 30726 31265 R transposase complement(30726..31265) Agrobacterium vitis S4 7365160 YP_002540006.1 CDS Avi_8042 NC_011982.1 32520 33272 R AraC family transcriptional regulator complement(32520..33272) Agrobacterium vitis S4 7365163 YP_002540007.1 CDS Avi_8044 NC_011982.1 33343 34059 D transposase 33343..34059 Agrobacterium vitis S4 7365164 YP_002540008.1 CDS traG NC_011982.1 34845 35393 R Ti-type conjugative transfer system protein TraG complement(34845..35393) Agrobacterium vitis S4 7365165 YP_002540009.1 CDS traD NC_011982.1 35380 35595 R conjugal transfer protein Dtr system complement(35380..35595) Agrobacterium vitis S4 7365166 YP_002540010.1 CDS traC NC_011982.1 35600 35896 R conjugal transfer protein TraC complement(35600..35896) Agrobacterium vitis S4 7365167 YP_002540011.1 CDS Avi_8059 NC_011982.1 40885 41259 R transposase complement(40885..41259) Agrobacterium vitis S4 7365171 YP_002540012.1 CDS Avi_8066 NC_011982.1 44012 44956 R hypothetical protein complement(44012..44956) Agrobacterium vitis S4 7365175 YP_002540013.1 CDS exsI NC_011982.1 44953 45393 R transcriptional regulator complement(44953..45393) Agrobacterium vitis S4 7365176 YP_002540014.1 CDS Avi_8068 NC_011982.1 45390 47018 R GGDEF family protein complement(45390..47018) Agrobacterium vitis S4 7365177 YP_002540015.1 CDS Avi_8070 NC_011982.1 47843 48883 D transposase 47843..48883 Agrobacterium vitis S4 7365178 YP_002540016.1 CDS Avi_8072 NC_011982.1 49695 49979 R transposase complement(49695..49979) Agrobacterium vitis S4 7365180 YP_002540017.1 CDS Avi_8073 NC_011982.1 49976 51265 R hypothetical protein complement(49976..51265) Agrobacterium vitis S4 7365181 YP_002540018.1 CDS Avi_8074 NC_011982.1 51395 51682 R transcriptional regulator complement(51395..51682) Agrobacterium vitis S4 7365182 YP_002540019.1 CDS Avi_8075 NC_011982.1 51718 52392 R hypothetical protein complement(51718..52392) Agrobacterium vitis S4 7365183 YP_002540020.1 CDS Avi_8076 NC_011982.1 52672 53013 D hypothetical protein 52672..53013 Agrobacterium vitis S4 7365184 YP_002540021.1 CDS Avi_8077 NC_011982.1 52985 54193 D hypothetical protein 52985..54193 Agrobacterium vitis S4 7365185 YP_002540022.1 CDS Avi_8078 NC_011982.1 54336 54938 D hypothetical protein 54336..54938 Agrobacterium vitis S4 7365186 YP_002540023.1 CDS Avi_8079 NC_011982.1 55167 56579 D helicase SNF2 family 55167..56579 Agrobacterium vitis S4 7365187 YP_002540024.1 CDS Avi_8080 NC_011982.1 56800 57684 D transposase 56800..57684 Agrobacterium vitis S4 7365188 YP_002540025.1 CDS Avi_8083 NC_011982.1 57688 61323 D helicase 57688..61323 Agrobacterium vitis S4 7365189 YP_002540026.1 CDS Avi_8085 NC_011982.1 61659 64496 R hypothetical protein complement(61659..64496) Agrobacterium vitis S4 7365190 YP_002540027.1 CDS rzcA NC_011982.1 64493 65224 R rhizobiocin/RTX toxin complement(64493..65224) Agrobacterium vitis S4 7365191 YP_002540028.1 CDS Avi_8089 NC_011982.1 65582 66406 R PEP phosphonomutase complement(65582..66406) Agrobacterium vitis S4 7365192 YP_002540029.1 CDS Avi_8094 NC_011982.1 68595 69068 D hypothetical protein 68595..69068 Agrobacterium vitis S4 7365194 YP_002540030.1 CDS Avi_8095 NC_011982.1 69065 69952 D hypothetical protein 69065..69952 Agrobacterium vitis S4 7365195 YP_002540031.1 CDS Avi_8097 NC_011982.1 69949 70353 D hypothetical protein 69949..70353 Agrobacterium vitis S4 7365196 YP_002540032.1 CDS Avi_8098 NC_011982.1 70699 71298 D hypothetical protein 70699..71298 Agrobacterium vitis S4 7365197 YP_002540033.1 CDS ardC NC_011982.1 71614 72540 D antirestriction protein 71614..72540 Agrobacterium vitis S4 7365198 YP_002540034.1 CDS Avi_8103 NC_011982.1 73428 73613 R transposase complement(73428..73613) Agrobacterium vitis S4 7365199 YP_002540035.1 CDS Avi_8104 NC_011982.1 73595 74479 R transposase complement(73595..74479) Agrobacterium vitis S4 7365200 YP_002540036.1 CDS Avi_8105 NC_011982.1 74734 75630 R IS1111A/IS1328/IS1533 family transposase complement(74734..75630) Agrobacterium vitis S4 7365201 YP_002540037.1 CDS Avi_8111 NC_011982.1 77849 78151 R hypothetical protein complement(77849..78151) Agrobacterium vitis S4 7365203 YP_002540038.1 CDS Avi_8114 NC_011982.1 78540 79766 D integrase/recombinase 78540..79766 Agrobacterium vitis S4 7365204 YP_002540039.1 CDS xerC NC_011982.1 79742 80680 D site-specific tyrosine recombinase XerC 79742..80680 Agrobacterium vitis S4 7365205 YP_002540040.1 CDS Avi_8116 NC_011982.1 80677 81684 D integrase/recombinase 80677..81684 Agrobacterium vitis S4 7365206 YP_002540041.1 CDS Avi_8119 NC_011982.1 82014 82316 D hypothetical protein 82014..82316 Agrobacterium vitis S4 7365207 YP_002540042.1 CDS Avi_8120 NC_011982.1 82457 82654 D hypothetical protein 82457..82654 Agrobacterium vitis S4 7365208 YP_002540043.1 CDS Avi_8121 NC_011982.1 82794 83042 D hypothetical protein 82794..83042 Agrobacterium vitis S4 7365209 YP_002540044.1 CDS Avi_8123 NC_011982.1 83145 83423 R HNS-type DNA binding protein complement(83145..83423) Agrobacterium vitis S4 7365210 YP_002540045.1 CDS Avi_8126 NC_011982.1 83507 83815 R hypothetical protein complement(83507..83815) Agrobacterium vitis S4 7365211 YP_002540046.1 CDS yci NC_011982.1 83870 84310 R nuclease complement(83870..84310) Agrobacterium vitis S4 7365212 YP_002540047.1 CDS traG NC_011982.1 84307 86271 R VirD4 family; conjugal transfer coupling protein TraG complement(84307..86271) Agrobacterium vitis S4 7365213 YP_002540048.1 CDS traD NC_011982.1 86258 86473 R conjugal transfer protein Dtr system complement(86258..86473) Agrobacterium vitis S4 7365214 YP_002540049.1 CDS traC NC_011982.1 86478 86774 R conjugal transfer protein TraC complement(86478..86774) Agrobacterium vitis S4 7365287 YP_002540050.1 CDS traA NC_011982.1 87030 90332 D conjugal transfer system TraA; oriT nicking enzyme; Dtr system oriT relaxase 87030..90332 Agrobacterium vitis S4 7365050 YP_002540051.1 CDS traF NC_011982.1 90329 90859 D conjugal transfer pilin processing protease TraF 90329..90859 Agrobacterium vitis S4 7365051 YP_002540052.1 CDS traH NC_011982.1 92094 92723 D conjugal transfer protein TraH 92094..92723 Agrobacterium vitis S4 7365053 YP_002540053.1 CDS Avi_8136 NC_011982.1 92879 93325 D hypothetical protein 92879..93325 Agrobacterium vitis S4 7365054 YP_002540054.1 CDS Avi_8137 NC_011982.1 93351 93785 D hypothetical protein 93351..93785 Agrobacterium vitis S4 7365055 YP_002540055.1 CDS traM NC_011982.1 94123 94431 D transcriptional repressor 94123..94431 Agrobacterium vitis S4 7365056 YP_002540056.1 CDS traR NC_011982.1 94839 95522 R quorum-sensing transcriptional regulator; transcriptional regulator TraR complement(94839..95522) Agrobacterium vitis S4 7365057 YP_002540057.1 CDS alr NC_011982.1 95892 96776 R alanine racemase complement(95892..96776) Agrobacterium vitis S4 7365058 YP_002540058.1 CDS Avi_8143 NC_011982.1 96911 97372 D transcriptional regulator 96911..97372 Agrobacterium vitis S4 7365059 YP_002540059.1 CDS Avi_8145 NC_011982.1 97789 98604 R transcriptional regulator IclR family complement(97789..98604) Agrobacterium vitis S4 7365060 YP_002540060.1 CDS Avi_8146 NC_011982.1 98782 99897 D spermidine/putrescine binding protein of ABC transporter 98782..99897 Agrobacterium vitis S4 7365061 YP_002540061.1 CDS Avi_8147 NC_011982.1 100330 101070 D ABC transporter ATPase 100330..101070 Agrobacterium vitis S4 7365062 YP_002540062.1 CDS potB NC_011982.1 101072 101953 D ABC transporter permease 101072..101953 Agrobacterium vitis S4 7365063 YP_002540063.1 CDS Avi_8149 NC_011982.1 101950 102750 D ABC transporter 101950..102750 Agrobacterium vitis S4 7365064 YP_002540064.1 CDS bioA NC_011982.1 102871 104217 D hypothetical protein 102871..104217 Agrobacterium vitis S4 7365065 YP_002540065.1 CDS potB NC_011982.1 104805 105662 D ABC transporter permease 104805..105662 Agrobacterium vitis S4 7365066 YP_002540066.1 CDS Avi_8156 NC_011982.1 105659 106453 D ABC transporter 105659..106453 Agrobacterium vitis S4 7365067 YP_002540067.1 CDS potF NC_011982.1 106492 107529 D ABC transporter substrate binding protein (putrescine) 106492..107529 Agrobacterium vitis S4 7365068 YP_002540068.1 CDS potG NC_011982.1 107614 108747 D ABC transporter nucleotide binding/ATPase protein (putrescine) 107614..108747 Agrobacterium vitis S4 7365069 YP_002540069.1 CDS attK NC_011982.1 108866 110350 D NAD-dependent succinate aldehyde dehydrogenase 108866..110350 Agrobacterium vitis S4 7365070 YP_002540070.1 CDS dfpA NC_011982.1 110875 112443 D ABC transporter substrate binding protein (peptide) 110875..112443 Agrobacterium vitis S4 7365071 YP_002540071.1 CDS Avi_8163 NC_011982.1 112588 113337 R transcriptional regulator IclR family complement(112588..113337) Agrobacterium vitis S4 7365072 YP_002540072.1 CDS Avi_8165 NC_011982.1 113659 115041 R oxidoreductase complement(113659..115041) Agrobacterium vitis S4 7365073 YP_002540073.1 CDS Avi_8166 NC_011982.1 115013 115870 R hypothetical protein complement(115013..115870) Agrobacterium vitis S4 7365074 YP_002540074.1 CDS Avi_8168 NC_011982.1 115983 117338 R hypothetical protein complement(115983..117338) Agrobacterium vitis S4 7365075 YP_002540075.1 CDS Avi_8169 NC_011982.1 117493 118275 R ABC transporter permease complement(117493..118275) Agrobacterium vitis S4 7365076 YP_002540076.1 CDS potB NC_011982.1 118272 119141 R ABC transporter permease complement(118272..119141) Agrobacterium vitis S4 7365077 YP_002540077.1 CDS afuC NC_011982.1 119141 120235 R ABC transporter nucleotide binding/ATPase protein (iron) complement(119141..120235) Agrobacterium vitis S4 7365078 YP_002540078.1 CDS Avi_8173 NC_011982.1 120250 121284 R ABC transporter substrate binding protein (spermidine/putrescine) complement(120250..121284) Agrobacterium vitis S4 7365079 YP_002540079.1 CDS hyuB NC_011982.1 121315 123072 R hydantoin utilization protein complement(121315..123072) Agrobacterium vitis S4 7365080 YP_002540080.1 CDS hyuA NC_011982.1 123085 125130 R hydantoin utilization protein complement(123085..125130) Agrobacterium vitis S4 7365081 YP_002540081.1 CDS Avi_8178 NC_011982.1 125585 126352 D Transcriptional regulator 125585..126352 Agrobacterium vitis S4 7365082 YP_002540082.1 CDS Avi_8180 NC_011982.1 126581 127522 D peptide ABC transporter permease 126581..127522 Agrobacterium vitis S4 7365083 YP_002540083.1 CDS Avi_8181 NC_011982.1 127519 128400 D ABC transporter permease 127519..128400 Agrobacterium vitis S4 7365084 YP_002540084.1 CDS Avi_8183 NC_011982.1 128400 130190 D ABC transporter ATPase 128400..130190 Agrobacterium vitis S4 7365085 YP_002540085.1 CDS Avi_8184 NC_011982.1 130199 131530 D MmgE/PrpD family protein 130199..131530 Agrobacterium vitis S4 7365086 YP_002540086.1 CDS adhP NC_011982.1 131825 132874 D alcohol dehydrogenase 131825..132874 Agrobacterium vitis S4 7365087 YP_002540087.1 CDS Avi_8188 NC_011982.1 132911 134464 D aldehyde dehydrogenase 132911..134464 Agrobacterium vitis S4 7365088 YP_002540088.1 CDS Avi_8194 NC_011982.1 137201 137929 D T-DNA oncoprotein 137201..137929 Agrobacterium vitis S4 7365091 YP_002540089.1 CDS nos NC_011982.1 138220 139356 R D-nopaline dehydrogenase complement(138220..139356) Agrobacterium vitis S4 7365092 YP_002540090.1 CDS repA NC_011982.1 141732 142943 D replication protein A 141732..142943 Agrobacterium vitis S4 7365094 YP_002540091.1 CDS repB NC_011982.1 142940 143977 D replication protein B 142940..143977 Agrobacterium vitis S4 7365095 YP_002540092.1 CDS repC NC_011982.1 144222 145484 D replication protein C 144222..145484 Agrobacterium vitis S4 7365096 YP_002540093.1 CDS Avi_8202 NC_011982.1 145481 146581 R transposase complement(145481..146581) Agrobacterium vitis S4 7365097 YP_002540094.1 CDS virD5 NC_011982.1 148205 150673 R virA/G regulated protein complement(148205..150673) Agrobacterium vitis S4 7365100 YP_002540095.1 CDS virD4 NC_011982.1 150781 152772 R coupling protein TraG/VirD4 family; type IV secretion system protein VirD4 complement(150781..152772) Agrobacterium vitis S4 7365101 YP_002540096.1 CDS virD3 NC_011982.1 152830 155502 R virA/G regulated protein complement(152830..155502) Agrobacterium vitis S4 7365102 YP_002540097.1 CDS virD2 NC_011982.1 155516 156727 R type IV secretion system T-DNA border endonuclease VirD2 complement(155516..156727) Agrobacterium vitis S4 7365103 YP_002540098.1 CDS virD1 NC_011982.1 156754 157200 R type IV secretion system T-DNA border endonuclease VirD1 complement(156754..157200) Agrobacterium vitis S4 7365104 YP_002540099.1 CDS virC1 NC_011982.1 157457 158152 D putative crown gall tumor protein VirC1 157457..158152 Agrobacterium vitis S4 7365105 YP_002540100.1 CDS virC2 NC_011982.1 158149 158763 D putative crown gall tumor protein VirC2 158149..158763 Agrobacterium vitis S4 7365106 YP_002540101.1 CDS virG NC_011982.1 158885 159610 R two-component response regulator VirG complement(158885..159610) Agrobacterium vitis S4 7365107 YP_002540102.1 CDS virB11 NC_011982.1 159841 160875 R ATPase; type IV secretion system protein VirB11 complement(159841..160875) Agrobacterium vitis S4 7365108 YP_002540103.1 CDS virB10 NC_011982.1 160909 162030 R type IV secretion system protein VirB10 complement(160909..162030) Agrobacterium vitis S4 7365109 YP_002540104.1 CDS virB9 NC_011982.1 162030 162908 R type IV secretion system protein VirB9 complement(162030..162908) Agrobacterium vitis S4 7365110 YP_002540105.1 CDS virB8 NC_011982.1 162905 163618 R type IV secretion system protein VirB8 complement(162905..163618) Agrobacterium vitis S4 7365111 YP_002540106.1 CDS virB7 NC_011982.1 163605 163772 R type IV secretion system lipoprotein VirB7 complement(163605..163772) Agrobacterium vitis S4 7365112 YP_002540107.1 CDS virB6 NC_011982.1 163800 164687 R type IV secretion system protein VirB6 complement(163800..164687) Agrobacterium vitis S4 7365284 YP_002540108.1 CDS virB5 NC_011982.1 164747 165415 R type IV secretion system protein VirB5 complement(164747..165415) Agrobacterium vitis S4 7365113 YP_002540109.1 CDS virB4 NC_011982.1 165443 167812 R type IV secretion system protein VirB4 complement(165443..167812) Agrobacterium vitis S4 7365114 YP_002540110.1 CDS virB3 NC_011982.1 167812 168138 R type IV secretion system protein VirB3 complement(167812..168138) Agrobacterium vitis S4 7365115 YP_002540111.1 CDS virB2 NC_011982.1 168135 168500 R type IV secretion system pilin subunit VirB2 complement(168135..168500) Agrobacterium vitis S4 7365116 YP_002540112.1 CDS virB1 NC_011982.1 168516 169232 R type IV secretion system lytic transglycosylase VirB1 complement(168516..169232) Agrobacterium vitis S4 7365117 YP_002540113.1 CDS Avi_8230 NC_011982.1 170524 170877 D transposase 170524..170877 Agrobacterium vitis S4 7365119 YP_002540114.1 CDS Avi_8231 NC_011982.1 170939 172600 D transposase 170939..172600 Agrobacterium vitis S4 7365120 YP_002540115.1 CDS Avi_8233 NC_011982.1 172907 173212 R hypothetical protein complement(172907..173212) Agrobacterium vitis S4 7365122 YP_002540116.1 CDS Avi_8237 NC_011982.1 174077 174439 R transposase complement(174077..174439) Agrobacterium vitis S4 7365124 YP_002540117.1 CDS Avi_8238 NC_011982.1 174421 174783 R transposase complement(174421..174783) Agrobacterium vitis S4 7365125 YP_002540118.1 CDS virE3 NC_011982.1 175275 177296 R virA/G regulated protein complement(175275..177296) Agrobacterium vitis S4 7365127 YP_002540119.1 CDS virE2 NC_011982.1 177363 179033 R type IV secretion system single-stranded DNA binding protein VirE2 complement(177363..179033) Agrobacterium vitis S4 7365128 YP_002540120.1 CDS virE1 NC_011982.1 179047 179238 R in Agrobacterium tumefaciens plasmid Ti this protein binds VirE2; type IV secretion system chaperone VirE1 complement(179047..179238) Agrobacterium vitis S4 7365129 YP_002540121.1 CDS Avi_8248 NC_011982.1 181933 182286 D transposase 181933..182286 Agrobacterium vitis S4 7365132 YP_002540122.1 CDS Avi_8249 NC_011982.1 182348 184009 D transposase 182348..184009 Agrobacterium vitis S4 7365215 YP_002540123.1 CDS virA NC_011982.1 184278 186821 R two-component VirA-like sensor kinase complement(184278..186821) Agrobacterium vitis S4 7365216 YP_002540124.1 CDS virH1 NC_011982.1 187013 188221 R P-450 monooxygenase complement(187013..188221) Agrobacterium vitis S4 7365217 YP_002540125.1 CDS Avi_8253 NC_011982.1 188557 189786 D phage integrase family protein 188557..189786 Agrobacterium vitis S4 7365218 YP_002540126.1 CDS tnp NC_011982.1 189783 190805 D transposase 189783..190805 Agrobacterium vitis S4 7365219 YP_002540127.1 CDS tnp NC_011982.1 191202 191570 R transposase complement(191202..191570) Agrobacterium vitis S4 7365220 YP_002540128.1 CDS Avi_8256 NC_011982.1 191686 192522 R reverse transcriptase-like protein complement(191686..192522) Agrobacterium vitis S4 7365221 YP_002540129.1 CDS Avi_8257 NC_011982.1 192645 192974 R integrase/recombinase complement(192645..192974) Agrobacterium vitis S4 7365222 YP_002540130.1 CDS Avi_8258 NC_011982.1 192978 193862 R transposase complement(192978..193862) Agrobacterium vitis S4 7365223 YP_002540131.1 CDS Avi_8259 NC_011982.1 194083 194823 R integrase/recombinase complement(194083..194823) Agrobacterium vitis S4 7365224 YP_002540132.1 CDS Avi_8260 NC_011982.1 194813 195790 R integrase/recombinase complement(194813..195790) Agrobacterium vitis S4 7365225 YP_002540133.1 CDS Avi_8262 NC_011982.1 195790 196767 R integrase/recombinase complement(195790..196767) Agrobacterium vitis S4 7365226 YP_002540134.1 CDS Avi_8264 NC_011982.1 197080 197853 R 18S rRNA intron 1 protein complement(197080..197853) Agrobacterium vitis S4 7365227 YP_002540135.1 CDS Avi_8265 NC_011982.1 197920 198693 D hypothetical protein 197920..198693 Agrobacterium vitis S4 7365228 YP_002540136.1 CDS Avi_8266 NC_011982.1 198912 199241 R hypothetical protein complement(198912..199241) Agrobacterium vitis S4 7365229 YP_002540137.1 CDS Avi_8269 NC_011982.1 200377 200997 D protein 6b 200377..200997 Agrobacterium vitis S4 7365230 YP_002540138.1 CDS Avi_8271 NC_011982.1 201537 202619 R D-vitopine dehydrogenase complement(201537..202619) Agrobacterium vitis S4 7365231 YP_002540139.1 CDS Avi_8272 NC_011982.1 203032 203541 D insertion sequence ATP-binding protein 203032..203541 Agrobacterium vitis S4 7365232 YP_002540140.1 CDS tnp NC_011982.1 203849 204409 D transposase 203849..204409 Agrobacterium vitis S4 7365233 YP_002540141.1 CDS Avi_8275 NC_011982.1 205056 206207 D ATP-dependent DNA ligase 205056..206207 Agrobacterium vitis S4 7365234 YP_002540142.1 CDS Avi_8276 NC_011982.1 206271 206633 R hypothetical protein complement(206271..206633) Agrobacterium vitis S4 7365235 YP_002540143.1 CDS Avi_8278 NC_011982.1 207335 207958 D virP 207335..207958 Agrobacterium vitis S4 7365237 YP_002540144.1 CDS tnp NC_011982.1 208159 209580 R transposase complement(208159..209580) Agrobacterium vitis S4 7365238 YP_002540145.1 CDS Avi_8280 NC_011982.1 209856 210158 D hypothetical protein 209856..210158 Agrobacterium vitis S4 7365239 YP_002540146.1 CDS Avi_8282 NC_011982.1 210169 211389 R transposase for insertion sequence element isrm3 complement(210169..211389) Agrobacterium vitis S4 7365240 YP_002540147.1 CDS tms2 NC_011982.1 213627 215015 R catalyzes the formation of indole-3-acetic acid from indole-3-acetamide; indole acetimide hydrolase complement(213627..215015) Agrobacterium vitis S4 7365244 YP_002540148.1 CDS tms1 NC_011982.1 215346 217517 D tryptophan 2-monooxygenase 215346..217517 Agrobacterium vitis S4 7365245 YP_002540149.1 CDS Avi_8291 NC_011982.1 218818 219702 R transposase complement(218818..219702) Agrobacterium vitis S4 7365247 YP_002540150.1 CDS istA NC_011982.1 219847 220458 R IS21 family transposase complement(219847..220458) Agrobacterium vitis S4 7365248 YP_002540151.1 CDS ipt NC_011982.1 221625 222335 D isopentenyl transferase 221625..222335 Agrobacterium vitis S4 7365249 YP_002540152.1 CDS Avi_8295 NC_011982.1 222853 223242 R D-vitopine dehydrogenase complement(222853..223242) Agrobacterium vitis S4 7365250 YP_002540153.1 CDS Avi_8296 NC_011982.1 223484 223786 R D-vitopine dehydrogenase complement(223484..223786) Agrobacterium vitis S4 7365251 YP_002540154.1 CDS Avi_8298 NC_011982.1 224691 225107 D hypothetical protein 224691..225107 Agrobacterium vitis S4 7365252 YP_002540155.1 CDS traR NC_011982.1 225258 225950 R quorum-sensing transcriptional regulator; transcriptional regulator TraR complement(225258..225950) Agrobacterium vitis S4 7365253 YP_002540156.1 CDS noxA NC_011982.1 226174 227568 R D-nopaline dehydrogenase complement(226174..227568) Agrobacterium vitis S4 7365254 YP_002540157.1 CDS noxB NC_011982.1 227851 228921 R D-nopaline dehydrogenase complement(227851..228921) Agrobacterium vitis S4 7365255 YP_002540158.1 CDS Avi_8304 NC_011982.1 228990 229787 R ABC transporter complement(228990..229787) Agrobacterium vitis S4 7365256 YP_002540159.1 CDS attA2 NC_011982.1 229784 230641 R mannopine ABC transporter permease complement(229784..230641) Agrobacterium vitis S4 7365257 YP_002540160.1 CDS Avi_8306 NC_011982.1 230638 231681 R ABC transporter ATPase complement(230638..231681) Agrobacterium vitis S4 7365258 YP_002540161.1 CDS Avi_8307 NC_011982.1 231828 232862 R ABC transporter substrate-binding protein complement(231828..232862) Agrobacterium vitis S4 7365259 YP_002540162.1 CDS nocR NC_011982.1 232967 233869 D LysR family transcriptional regulator 232967..233869 Agrobacterium vitis S4 7365260 YP_002540163.1 CDS moaD NC_011982.1 234022 235884 R ABC transporter ATPase complement(234022..235884) Agrobacterium vitis S4 7365261 YP_002540164.1 CDS dppC NC_011982.1 235881 236738 R peptide ABC transporter permease complement(235881..236738) Agrobacterium vitis S4 7365262 YP_002540165.1 CDS Avi_8312 NC_011982.1 236735 237688 R peptide ABC transporter permease complement(236735..237688) Agrobacterium vitis S4 7365263 YP_002540166.1 CDS Avi_8313 NC_011982.1 237843 239393 R ABC transporter substrate binding protein (oligopeptide) complement(237843..239393) Agrobacterium vitis S4 7365264 YP_002540167.1 CDS Avi_8314 NC_011982.1 239982 240278 D NAD(FAD)-dependent dehydrogenase 239982..240278 Agrobacterium vitis S4 7365265 YP_002540168.1 CDS noxA NC_011982.1 240275 241684 D D-nopaline dehydrogenase 240275..241684 Agrobacterium vitis S4 7365266 YP_002540169.1 CDS Avi_8317 NC_011982.1 241677 242030 D Endoribonuclease L-PSP 241677..242030 Agrobacterium vitis S4 7365267 YP_002540170.1 CDS hyuB NC_011982.1 242167 243891 R hydantoin utilization protein complement(242167..243891) Agrobacterium vitis S4 7365268 YP_002540171.1 CDS hyuA NC_011982.1 243894 245924 R hydantoin utilization protein complement(243894..245924) Agrobacterium vitis S4 7365269 YP_002540172.1 CDS noxB NC_011982.1 246018 247160 R D-nopaline dehydrogenase complement(246018..247160) Agrobacterium vitis S4 7365270 YP_002540173.1 CDS nocR NC_011982.1 247266 248156 D LysR family transcriptional regulator 247266..248156 Agrobacterium vitis S4 7365271 YP_002540174.1 CDS trbI NC_011982.1 248211 249524 R conjugal transfer protein TrbI complement(248211..249524) Agrobacterium vitis S4 7365272 YP_002540175.1 CDS trbH NC_011982.1 249537 250013 R conjugal transfer protein TrbH complement(249537..250013) Agrobacterium vitis S4 7365273 YP_002540176.1 CDS trbG NC_011982.1 250013 250867 R conjugal transfer protein TrbG complement(250013..250867) Agrobacterium vitis S4 7365274 YP_002540177.1 CDS trbF NC_011982.1 250884 251546 R conjugal transfer protein TrbF complement(250884..251546) Agrobacterium vitis S4 7365275 YP_002540178.1 CDS trbL NC_011982.1 251561 252589 R conjugal transfer protein TrbL complement(251561..252589) Agrobacterium vitis S4 7365276 YP_002540179.1 CDS trbK NC_011982.1 252739 252966 R entry-exclusion protein complement(252739..252966) Agrobacterium vitis S4 7365277 YP_002540180.1 CDS trbJ NC_011982.1 252963 253772 R conjugal transfer protein TrbJ complement(252963..253772) Agrobacterium vitis S4 7365278 YP_002540181.1 CDS trbE NC_011982.1 253744 256206 R type IV secretion system ATPase; VirB4 family; conjugal transfer protein TrbE complement(253744..256206) Agrobacterium vitis S4 7365279 YP_002540182.1 CDS trbD NC_011982.1 256217 256516 R conjugal transfer protein TrbD complement(256217..256516) Agrobacterium vitis S4 7365280 YP_002540183.1 CDS trbC NC_011982.1 256509 256913 R conjugal transfer protein TrbC complement(256509..256913) Agrobacterium vitis S4 7365281 YP_002540184.1 CDS trbB NC_011982.1 256903 257874 R VirB11 family protein; ATPase; conjugal transfer protein TrbB complement(256903..257874) Agrobacterium vitis S4 7365282 YP_002540185.1 CDS traI NC_011982.1 257871 258509 R putative autoinducer synthesis protein complement(257871..258509) Agrobacterium vitis S4 7365283 YP_002542549.1 CDS repA NC_011984.1 109 1308 D replication protein A 109..1308 Agrobacterium vitis S4 7367867 YP_002542550.1 CDS repB NC_011984.1 1391 2368 D replication protein B 1391..2368 Agrobacterium vitis S4 7367754 YP_002542551.1 CDS repC NC_011984.1 2556 3833 D replication initiation protein RepC 2556..3833 Agrobacterium vitis S4 7367755 YP_002542552.1 CDS Avi_9004 NC_011984.1 3839 4780 R DNA invertase complement(3839..4780) Agrobacterium vitis S4 7367756 YP_002542553.1 CDS exsG NC_011984.1 6113 7192 D two component sensor kinase 6113..7192 Agrobacterium vitis S4 7367757 YP_002542554.1 CDS Avi_9008 NC_011984.1 7500 8633 R phage integrase family protein complement(7500..8633) Agrobacterium vitis S4 7367758 YP_002542555.1 CDS Avi_9009 NC_011984.1 8746 9711 D hypothetical protein 8746..9711 Agrobacterium vitis S4 7367759 YP_002542556.1 CDS Avi_9010 NC_011984.1 9973 10422 D hypothetical protein 9973..10422 Agrobacterium vitis S4 7367760 YP_002542557.1 CDS Avi_9011 NC_011984.1 10412 10786 R hypothetical protein complement(10412..10786) Agrobacterium vitis S4 7367761 YP_002542558.1 CDS Avi_9013 NC_011984.1 10791 11003 R Translation initiation factor 2 (IF-2; GTPase) complement(10791..11003) Agrobacterium vitis S4 7367762 YP_002542559.1 CDS Avi_9014 NC_011984.1 11140 11832 D hypothetical protein 11140..11832 Agrobacterium vitis S4 7367763 YP_002542560.1 CDS Avi_9019 NC_011984.1 13900 14274 R transposase complement(13900..14274) Agrobacterium vitis S4 7367766 YP_002542561.1 CDS Avi_9020 NC_011984.1 14326 15093 R integrase/recombinase complement(14326..15093) Agrobacterium vitis S4 7367767 YP_002542562.1 CDS Avi_9026 NC_011984.1 17042 17995 R sensory transduction histidine kinase complement(17042..17995) Agrobacterium vitis S4 7367770 YP_002542563.1 CDS Avi_9028 NC_011984.1 18104 18475 R two component sensor kinase/response regulator hybrid complement(18104..18475) Agrobacterium vitis S4 7367771 YP_002542564.1 CDS Avi_9030 NC_011984.1 18707 19432 R hypothetical protein complement(18707..19432) Agrobacterium vitis S4 7367772 YP_002542565.1 CDS Avi_9035 NC_011984.1 21766 22341 R transposase IS4 family protein complement(21766..22341) Agrobacterium vitis S4 7367774 YP_002542566.1 CDS Avi_9036 NC_011984.1 22412 22726 R hypothetical protein complement(22412..22726) Agrobacterium vitis S4 7367775 YP_002542567.1 CDS Avi_9037 NC_011984.1 23098 24783 D hypothetical protein 23098..24783 Agrobacterium vitis S4 7367776 YP_002542568.1 CDS Avi_9038 NC_011984.1 24776 25312 D hypothetical protein 24776..25312 Agrobacterium vitis S4 7367777 YP_002542569.1 CDS Avi_9039 NC_011984.1 25407 26138 R transposase complement(25407..26138) Agrobacterium vitis S4 7367778 YP_002542570.1 CDS cvgS NC_011984.1 26163 28268 R two component sensor kinase/response regulator hybrid complement(26163..28268) Agrobacterium vitis S4 7367779 YP_002542571.1 CDS Avi_9042 NC_011984.1 28639 29355 R transposase complement(28639..29355) Agrobacterium vitis S4 7367780 YP_002542572.1 CDS Avi_9043 NC_011984.1 29502 29999 R hypothetical protein complement(29502..29999) Agrobacterium vitis S4 7367781 YP_002542573.1 CDS Avi_9044 NC_011984.1 30063 30977 R hypothetical protein complement(30063..30977) Agrobacterium vitis S4 7367782 YP_002542574.1 CDS Avi_9047 NC_011984.1 30995 31510 R chemotaxis response regulator complement(30995..31510) Agrobacterium vitis S4 7367783 YP_002542575.1 CDS Avi_9049 NC_011984.1 31975 32436 D Transcriptional regulator 31975..32436 Agrobacterium vitis S4 7367784 YP_002542576.1 CDS Avi_9050 NC_011984.1 32650 32895 D Phage envelope protein 32650..32895 Agrobacterium vitis S4 7367785 YP_002542577.1 CDS Avi_9052 NC_011984.1 33087 34187 D polyhydroxybutyrate depolymerase 33087..34187 Agrobacterium vitis S4 7367786 YP_002542578.1 CDS Avi_9053 NC_011984.1 34433 35254 D hypothetical protein 34433..35254 Agrobacterium vitis S4 7367787 YP_002542579.1 CDS Avi_9054 NC_011984.1 35626 36870 R hypothetical protein complement(35626..36870) Agrobacterium vitis S4 7367788 YP_002542580.1 CDS Avi_9055 NC_011984.1 36863 37198 R hypothetical protein complement(36863..37198) Agrobacterium vitis S4 7367789 YP_002542581.1 CDS Avi_9056 NC_011984.1 37429 39786 D hypothetical protein 37429..39786 Agrobacterium vitis S4 7367790 YP_002542582.1 CDS Avi_9057 NC_011984.1 39913 40578 R hypothetical protein complement(39913..40578) Agrobacterium vitis S4 7367791 YP_002542583.1 CDS Avi_9059 NC_011984.1 40715 40927 D Translation initiation factor 2 (IF-2; GTPase) 40715..40927 Agrobacterium vitis S4 7367792 YP_002542584.1 CDS Avi_9061 NC_011984.1 40932 41306 D hypothetical protein 40932..41306 Agrobacterium vitis S4 7367793 YP_002542585.1 CDS mcpC NC_011984.1 42169 43698 R methyl-accepting chemotaxis protein complement(42169..43698) Agrobacterium vitis S4 7367795 YP_002542586.1 CDS Avi_9066 NC_011984.1 43937 44251 D IS298 transposase OrfA 43937..44251 Agrobacterium vitis S4 7367796 YP_002542587.1 CDS Avi_9067 NC_011984.1 44322 44717 D transposase 44322..44717 Agrobacterium vitis S4 7367797 YP_002542588.1 CDS Avi_9068 NC_011984.1 45005 45976 R AraC family transcriptional regulator complement(45005..45976) Agrobacterium vitis S4 7367798 YP_002542589.1 CDS Avi_9071 NC_011984.1 46632 47027 R hypothetical protein complement(46632..47027) Agrobacterium vitis S4 7367799 YP_002542590.1 CDS Avi_9072 NC_011984.1 47098 47412 R hypothetical protein complement(47098..47412) Agrobacterium vitis S4 7367800 YP_002542591.1 CDS Avi_9073 NC_011984.1 47521 48102 D hypothetical protein 47521..48102 Agrobacterium vitis S4 7367801 YP_002542592.1 CDS Avi_9074 NC_011984.1 48487 48798 R hypothetical protein complement(48487..48798) Agrobacterium vitis S4 7367802 YP_002542593.1 CDS Avi_9075 NC_011984.1 48919 50595 D hypothetical protein 48919..50595 Agrobacterium vitis S4 7367803 YP_002542594.1 CDS mcpC NC_011984.1 50659 52497 D methyl-accepting chemotaxis protein 50659..52497 Agrobacterium vitis S4 7367804 YP_002542595.1 CDS mcpA NC_011984.1 52940 53986 D methyl-accepting chemotaxis protein 52940..53986 Agrobacterium vitis S4 7367805 YP_002542596.1 CDS Avi_9079 NC_011984.1 54054 54428 D transposase 54054..54428 Agrobacterium vitis S4 7367806 YP_002542597.1 CDS Avi_9083 NC_011984.1 55855 58425 R bacteriophytochrome protein complement(55855..58425) Agrobacterium vitis S4 7367808 YP_002542598.1 CDS agpT NC_011984.1 58448 59395 R AraC family transcriptional regulator complement(58448..59395) Agrobacterium vitis S4 7367809 YP_002542599.1 CDS mcpC NC_011984.1 60362 62647 D methyl-accepting chemotaxis protein 60362..62647 Agrobacterium vitis S4 7367810 YP_002542600.1 CDS Avi_9093 NC_011984.1 64855 65088 D hypothetical protein 64855..65088 Agrobacterium vitis S4 7367813 YP_002542601.1 CDS Avi_9096 NC_011984.1 66774 67127 R transposition-related protein complement(66774..67127) Agrobacterium vitis S4 7367815 YP_002542602.1 CDS Avi_9097 NC_011984.1 67124 67612 R TRm1a transposase complement(67124..67612) Agrobacterium vitis S4 7367816 YP_002542603.1 CDS Avi_9098 NC_011984.1 67960 69096 R bacteriophytochrome protein complement(67960..69096) Agrobacterium vitis S4 7367817 YP_002542604.1 CDS cheB NC_011984.1 69096 69665 R protein-glutamate methylesterase complement(69096..69665) Agrobacterium vitis S4 7367818 YP_002542605.1 CDS cheR NC_011984.1 69662 70495 R chemotaxis methyltransferase complement(69662..70495) Agrobacterium vitis S4 7367819 YP_002542606.1 CDS Avi_9103 NC_011984.1 70492 73929 R multi-sensor hybrid histidine kinase complement(70492..73929) Agrobacterium vitis S4 7367820 YP_002542607.1 CDS Avi_9104 NC_011984.1 74206 74586 D hypothetical protein 74206..74586 Agrobacterium vitis S4 7367821 YP_002542608.1 CDS Avi_9105 NC_011984.1 74603 75058 D hypothetical protein 74603..75058 Agrobacterium vitis S4 7367822 YP_002542609.1 CDS Avi_9106 NC_011984.1 75091 75744 D hypothetical protein 75091..75744 Agrobacterium vitis S4 7367823 YP_002542610.1 CDS Avi_9108 NC_011984.1 75741 76172 D pilT protein, N-terminal 75741..76172 Agrobacterium vitis S4 7367824 YP_002542611.1 CDS Avi_9109 NC_011984.1 76207 77067 R hypothetical protein complement(76207..77067) Agrobacterium vitis S4 7367825 YP_002542612.1 CDS Avi_9114 NC_011984.1 79068 79436 R transposase protein complement(79068..79436) Agrobacterium vitis S4 7367829 YP_002542613.1 CDS Avi_9115 NC_011984.1 79451 79828 R transposase protein complement(79451..79828) Agrobacterium vitis S4 7367830 YP_002542614.1 CDS moeB NC_011984.1 79930 80811 D molybdopterin biosynthesis protein 79930..80811 Agrobacterium vitis S4 7367831 YP_002542615.1 CDS Avi_9117 NC_011984.1 80928 81428 D hypothetical protein 80928..81428 Agrobacterium vitis S4 7367832 YP_002542616.1 CDS pykA NC_011984.1 81683 83116 R pyruvate kinase complement(81683..83116) Agrobacterium vitis S4 7367672 YP_002542617.1 CDS Avi_9119 NC_011984.1 83123 84358 R hydroxypyruvate reductase complement(83123..84358) Agrobacterium vitis S4 7367673 YP_002542618.1 CDS Avi_9120 NC_011984.1 84388 85476 R tartrate dehydrogenase complement(84388..85476) Agrobacterium vitis S4 7367674 YP_002542619.1 CDS Avi_9121 NC_011984.1 85498 86796 R MFS permease complement(85498..86796) Agrobacterium vitis S4 7367675 YP_002542620.1 CDS Avi_9122 NC_011984.1 86920 87834 D LysR family transcriptional regulator 86920..87834 Agrobacterium vitis S4 7367676 YP_002542621.1 CDS gntK NC_011984.1 88238 88753 R gluconokinase complement(88238..88753) Agrobacterium vitis S4 7367677 YP_002542622.1 CDS idnO NC_011984.1 88901 89671 R catalyzes the formation of 5-dehydro-D-gluconate from D-gluconate; gluconate 5-dehydrogenase complement(88901..89671) Agrobacterium vitis S4 7367678 YP_002542623.1 CDS Avi_9125 NC_011984.1 89674 91161 R ABC transporter nucleotide binding/ATPase protein (sugar) complement(89674..91161) Agrobacterium vitis S4 7367679 YP_002542624.1 CDS rbsC NC_011984.1 91158 92210 R ribose ABC transporter permease complement(91158..92210) Agrobacterium vitis S4 7367680 YP_002542625.1 CDS Avi_9127 NC_011984.1 92339 93454 R sugar ABC transporter (sugar-binding protein) complement(92339..93454) Agrobacterium vitis S4 7367681 YP_002542626.1 CDS hyuA NC_011984.1 93805 95847 D hydantoin utilization protein 93805..95847 Agrobacterium vitis S4 7367682 YP_002542627.1 CDS hyuB NC_011984.1 95913 97835 D hydantoin utilization protein 95913..97835 Agrobacterium vitis S4 7367683 YP_002542628.1 CDS Avi_9130 NC_011984.1 97851 99242 D aminotransferase 97851..99242 Agrobacterium vitis S4 7367684 YP_002542629.1 CDS Avi_9131 NC_011984.1 99284 100354 D transcriptional regulator LacI family 99284..100354 Agrobacterium vitis S4 7367685 YP_002542630.1 CDS Avi_9132 NC_011984.1 100905 101066 R transposase complement(100905..101066) Agrobacterium vitis S4 7367686 YP_002542631.1 CDS tnp NC_011984.1 101338 102495 R transposase complement(101338..102495) Agrobacterium vitis S4 7367687 YP_002542632.1 CDS Avi_9135 NC_011984.1 102532 103074 R transposase complement(102532..103074) Agrobacterium vitis S4 7367688 YP_002542633.1 CDS Avi_9140 NC_011984.1 104195 105196 R ABC transporter nucleotide binding/ATPase protein (oligopeptide) complement(104195..105196) Agrobacterium vitis S4 7367691 YP_002542634.1 CDS dppD NC_011984.1 105193 106836 R ABC transporter ATPase complement(105193..106836) Agrobacterium vitis S4 7367692 YP_002542635.1 CDS dppB NC_011984.1 107004 107954 R peptide ABC transporter permease complement(107004..107954) Agrobacterium vitis S4 7367693 YP_002542636.1 CDS Avi_9144 NC_011984.1 108061 109584 R ABC transporter substrate binding protein (oligopeptide) complement(108061..109584) Agrobacterium vitis S4 7367694 YP_002542637.1 CDS Avi_9145 NC_011984.1 109964 110845 R GntR family transcriptional regulator complement(109964..110845) Agrobacterium vitis S4 7367695 YP_002542638.1 CDS Avi_9146 NC_011984.1 110960 111943 D yurP 110960..111943 Agrobacterium vitis S4 7367696 YP_002542639.1 CDS Avi_9147 NC_011984.1 112114 112980 D Sugar kinase ribokinase family 112114..112980 Agrobacterium vitis S4 7367697 YP_002542640.1 CDS hyuA NC_011984.1 113085 115148 D hydantoin utilization protein 113085..115148 Agrobacterium vitis S4 7367698 YP_002542641.1 CDS hyuB NC_011984.1 115141 116841 D hydantoin utilization protein 115141..116841 Agrobacterium vitis S4 7367699 YP_002542642.1 CDS Avi_9150 NC_011984.1 116912 117685 D dinucleotide-utilizing enzyme 116912..117685 Agrobacterium vitis S4 7367700 YP_002542643.1 CDS ilvA NC_011984.1 117724 118692 D threonine dehydratase 117724..118692 Agrobacterium vitis S4 7367701 YP_002542644.1 CDS Avi_9152 NC_011984.1 118728 119957 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 118728..119957 Agrobacterium vitis S4 7367702 YP_002542645.1 CDS Avi_9153 NC_011984.1 120104 120742 D hypothetical protein 120104..120742 Agrobacterium vitis S4 7367703 YP_002542646.1 CDS Avi_9154 NC_011984.1 120739 121224 D hypothetical protein 120739..121224 Agrobacterium vitis S4 7367704 YP_002542647.1 CDS dnaE NC_011984.1 121509 122600 D DNA polymerase III alpha chain 121509..122600 Agrobacterium vitis S4 7367705 YP_002542648.1 CDS Avi_9156 NC_011984.1 123011 123358 D Helicase subunit of the DNA excision repair complex 123011..123358 Agrobacterium vitis S4 7367706 YP_002542649.1 CDS Avi_9158 NC_011984.1 123569 124531 D hypothetical protein 123569..124531 Agrobacterium vitis S4 7367707 YP_002542650.1 CDS Avi_9160 NC_011984.1 124737 125276 D hypothetical protein 124737..125276 Agrobacterium vitis S4 7367708 YP_002542651.1 CDS Avi_9161 NC_011984.1 125291 125692 D hypothetical protein 125291..125692 Agrobacterium vitis S4 7367709 YP_002542652.1 CDS Avi_9162 NC_011984.1 125793 130886 D helicase SNF2 family 125793..130886 Agrobacterium vitis S4 7367710 YP_002542653.1 CDS Avi_9163 NC_011984.1 131019 131879 R hypothetical protein complement(131019..131879) Agrobacterium vitis S4 7367711 YP_002542654.1 CDS parB NC_011984.1 132159 133997 D ParB family; plasmid partitioning protein 132159..133997 Agrobacterium vitis S4 7367712 YP_002542655.1 CDS Avi_9166 NC_011984.1 134098 134568 D hypothetical protein 134098..134568 Agrobacterium vitis S4 7367713 YP_002542656.1 CDS Avi_9167 NC_011984.1 134565 135455 D hypothetical protein 134565..135455 Agrobacterium vitis S4 7367714 YP_002542657.1 CDS Avi_9168 NC_011984.1 135452 136147 D hypothetical protein 135452..136147 Agrobacterium vitis S4 7367715 YP_002542658.1 CDS Avi_9171 NC_011984.1 136688 137287 D hypothetical protein 136688..137287 Agrobacterium vitis S4 7367716 YP_002542659.1 CDS ardC NC_011984.1 137593 138525 D antirestriction protein 137593..138525 Agrobacterium vitis S4 7367717 YP_002542660.1 CDS Avi_9174 NC_011984.1 138522 139493 D hypothetical protein 138522..139493 Agrobacterium vitis S4 7367718 YP_002542661.1 CDS Avi_9175 NC_011984.1 140093 140449 D hypothetical protein 140093..140449 Agrobacterium vitis S4 7367719 YP_002542662.1 CDS Avi_9177 NC_011984.1 140770 140940 D hypothetical protein 140770..140940 Agrobacterium vitis S4 7367720 YP_002542663.1 CDS Avi_9178 NC_011984.1 140982 141260 R HNS-type DNA binding protein complement(140982..141260) Agrobacterium vitis S4 7367721 YP_002542664.1 CDS Avi_9182 NC_011984.1 141398 141655 R hypothetical protein complement(141398..141655) Agrobacterium vitis S4 7367722 YP_002542665.1 CDS Avi_9184 NC_011984.1 141893 142276 R nuclease protein complement(141893..142276) Agrobacterium vitis S4 7367723 YP_002542666.1 CDS Avi_9185 NC_011984.1 142273 142671 R hypothetical protein complement(142273..142671) Agrobacterium vitis S4 7367724 YP_002542667.1 CDS traG NC_011984.1 142668 144638 R VirD4 family; conjugal transfer coupling protein TraG complement(142668..144638) Agrobacterium vitis S4 7367725 YP_002542668.1 CDS traD NC_011984.1 144625 144870 R conjugal transfer protein TraD complement(144625..144870) Agrobacterium vitis S4 7367726 YP_002542669.1 CDS traC NC_011984.1 144845 145222 R conjugal transfer protein Dtr system complement(144845..145222) Agrobacterium vitis S4 7367727 YP_002542670.1 CDS traA NC_011984.1 145321 148692 D conjugal transfer system TraA; oriT nicking enzyme; Dtr system oriT relaxase 145321..148692 Agrobacterium vitis S4 7367728 YP_002542671.1 CDS traF NC_011984.1 148689 149219 D conjugal transfer pilin processing protease TraF 148689..149219 Agrobacterium vitis S4 7367729 YP_002542672.1 CDS traB NC_011984.1 149236 150447 D conjugal transfer protein TraB 149236..150447 Agrobacterium vitis S4 7367730 YP_002542673.1 CDS traH NC_011984.1 150465 151091 D conjugal transfer protein TraH 150465..151091 Agrobacterium vitis S4 7367731 YP_002542674.1 CDS traM NC_011984.1 151405 151713 D transcriptional repressor 151405..151713 Agrobacterium vitis S4 7367732 YP_002542675.1 CDS traR NC_011984.1 151773 152477 R quorum-sensing transcriptional regulator; transcriptional regulator TraR complement(151773..152477) Agrobacterium vitis S4 7367733 YP_002542676.1 CDS Avi_9196 NC_011984.1 152864 153658 R hypothetical protein complement(152864..153658) Agrobacterium vitis S4 7367734 YP_002542677.1 CDS Avi_9197 NC_011984.1 153733 154812 R ABC transporter ATPase complement(153733..154812) Agrobacterium vitis S4 7367735 YP_002542678.1 CDS Avi_9198 NC_011984.1 154815 155693 R ABC transporter complement(154815..155693) Agrobacterium vitis S4 7367736 YP_002542679.1 CDS Avi_9199 NC_011984.1 155690 156562 R sugar ABC transporter permease complement(155690..156562) Agrobacterium vitis S4 7367737 YP_002542680.1 CDS Avi_9200 NC_011984.1 156633 157757 R sugar ABC transporter substrate-binding protein complement(156633..157757) Agrobacterium vitis S4 7367738 YP_002542681.1 CDS Avi_9201 NC_011984.1 157922 159064 D GntR family transcriptional regulator 157922..159064 Agrobacterium vitis S4 7367739 YP_002542682.1 CDS Avi_9202 NC_011984.1 159826 160521 D hypothetical protein 159826..160521 Agrobacterium vitis S4 7367740 YP_002542683.1 CDS fabG NC_011984.1 161260 162000 R 3-oxoacyl-ACP reductase complement(161260..162000) Agrobacterium vitis S4 7367741 YP_002542684.1 CDS Avi_9208 NC_011984.1 161997 162929 R nucleoside-diphosphate-sugar epimerase complement(161997..162929) Agrobacterium vitis S4 7367742 YP_002542685.1 CDS tnp NC_011984.1 164040 165197 D transposase 164040..165197 Agrobacterium vitis S4 7367744 YP_002542686.1 CDS Avi_9214 NC_011984.1 165466 166023 D transposase for insertion sequence 165466..166023 Agrobacterium vitis S4 7367745 YP_002542687.1 CDS Avi_9216 NC_011984.1 167092 168162 D HlyD family secretion protein 167092..168162 Agrobacterium vitis S4 7367747 YP_002542688.1 CDS Avi_9217 NC_011984.1 168165 170906 D ABC transporter ATPase 168165..170906 Agrobacterium vitis S4 7367748 YP_002542689.1 CDS Avi_9218 NC_011984.1 170909 172033 D ABC transporter 170909..172033 Agrobacterium vitis S4 7367749 YP_002542690.1 CDS pntA NC_011984.1 172654 173796 D NAD(P) transhydrogenase alpha subunit 172654..173796 Agrobacterium vitis S4 7367750 YP_002542691.1 CDS Avi_9220 NC_011984.1 173793 174101 D NAD/NADP transhydrogenase alpha subunit 173793..174101 Agrobacterium vitis S4 7367751 YP_002542692.1 CDS pntB NC_011984.1 174105 175538 D NAD(P)+ transhydrogenase beta chain 174105..175538 Agrobacterium vitis S4 7367752 YP_002542693.1 CDS attK NC_011984.1 175580 176971 D NAD-dependent succinate aldehyde dehydrogenase 175580..176971 Agrobacterium vitis S4 7367753 YP_002542694.1 CDS adhP NC_011984.1 176968 178011 D alcohol dehydrogenase 176968..178011 Agrobacterium vitis S4 7367868 YP_002542695.1 CDS Avi_9225 NC_011984.1 178928 179215 R transposase complement(178928..179215) Agrobacterium vitis S4 7367833 YP_002542696.1 CDS Avi_9227 NC_011984.1 179212 179709 R transcriptional regulator complement(179212..179709) Agrobacterium vitis S4 7367834 YP_002542697.1 CDS Avi_9228 NC_011984.1 179754 181268 D hypothetical protein 179754..181268 Agrobacterium vitis S4 7367835 YP_002542698.1 CDS Avi_9229 NC_011984.1 181736 182365 R TetR family transcriptional regulator complement(181736..182365) Agrobacterium vitis S4 7367836 YP_002542699.1 CDS Avi_9230 NC_011984.1 182583 183698 D epoxide hydrolase 182583..183698 Agrobacterium vitis S4 7367837 YP_002542700.1 CDS Avi_9231 NC_011984.1 183824 184567 R TetR family transcriptional regulator complement(183824..184567) Agrobacterium vitis S4 7367838 YP_002542701.1 CDS Avi_9233 NC_011984.1 184708 185838 D Monooxygenase FAD-binding 184708..185838 Agrobacterium vitis S4 7367839 YP_002542702.1 CDS Avi_9237 NC_011984.1 188108 188836 R ABC transporter ATPase complement(188108..188836) Agrobacterium vitis S4 7367842 YP_002542703.1 CDS Avi_9239 NC_011984.1 188833 189540 R amino acid ABC transporter permease complement(188833..189540) Agrobacterium vitis S4 7367843 YP_002542704.1 CDS Avi_9240 NC_011984.1 189540 190220 R ABC transporter permease complement(189540..190220) Agrobacterium vitis S4 7367844 YP_002542705.1 CDS Avi_9241 NC_011984.1 190255 191073 R amino acid ABC transporter substrate-binding protein complement(190255..191073) Agrobacterium vitis S4 7367845 YP_002542706.1 CDS Avi_9243 NC_011984.1 191370 192737 D hypothetical protein 191370..192737 Agrobacterium vitis S4 7367846 YP_002542707.1 CDS Avi_9244 NC_011984.1 192798 193478 R GntR family transcriptional regulator complement(192798..193478) Agrobacterium vitis S4 7367847 YP_002542708.1 CDS etfB NC_011984.1 193815 194564 D electron transfer flavoprotein beta subunit 193815..194564 Agrobacterium vitis S4 7367848 YP_002542709.1 CDS etfA NC_011984.1 194588 195547 D electron transfer flavoprotein alpha subunit 194588..195547 Agrobacterium vitis S4 7367849 YP_002542710.1 CDS proC NC_011984.1 195555 196457 D pyrroline-5-carboxylate reductase 195555..196457 Agrobacterium vitis S4 7367850 YP_002542711.1 CDS Avi_9251 NC_011984.1 196892 197008 R transposase complement(196892..197008) Agrobacterium vitis S4 7367851 YP_002542712.1 CDS Avi_9252 NC_011984.1 197317 198570 D phosphonoacetate hydrolase 197317..198570 Agrobacterium vitis S4 7367852 YP_002542713.1 CDS Avi_9253 NC_011984.1 198594 199517 R LysR family transcriptional regulator complement(198594..199517) Agrobacterium vitis S4 7367853 YP_002542714.1 CDS Avi_9254 NC_011984.1 200194 200544 R hypothetical protein complement(200194..200544) Agrobacterium vitis S4 7367854 YP_002542715.1 CDS trbI NC_011984.1 201057 202370 R conjugal transfer protein TrbI complement(201057..202370) Agrobacterium vitis S4 7367855 YP_002542716.1 CDS trbH NC_011984.1 202382 202858 R conjugal transfer protein TrbH complement(202382..202858) Agrobacterium vitis S4 7367856 YP_002542717.1 CDS trbG NC_011984.1 202858 203748 R conjugal transfer protein TrbG complement(202858..203748) Agrobacterium vitis S4 7367857 YP_002542718.1 CDS trbF NC_011984.1 203730 204392 R conjugal transfer protein TrbF complement(203730..204392) Agrobacterium vitis S4 7367858 YP_002542719.1 CDS trbL NC_011984.1 204407 205603 R conjugal transfer protein TrbL complement(204407..205603) Agrobacterium vitis S4 7367859 YP_002542720.1 CDS trbK NC_011984.1 205597 205818 R entry-exclusion protein complement(205597..205818) Agrobacterium vitis S4 7367860 YP_002542721.1 CDS trbJ NC_011984.1 205815 206624 R conjugal transfer protein TrbJ complement(205815..206624) Agrobacterium vitis S4 7367861 YP_002542722.1 CDS trbE NC_011984.1 206596 209064 R type IV secretion system ATPase; VirB4 family; conjugal transfer protein TrbE complement(206596..209064) Agrobacterium vitis S4 7367862 YP_002542723.1 CDS trbD NC_011984.1 209075 209374 R conjugal transfer protein TrbD complement(209075..209374) Agrobacterium vitis S4 7367863 YP_002542724.1 CDS trbC NC_011984.1 209367 209771 R conjugal transfer protein TrbC complement(209367..209771) Agrobacterium vitis S4 7367864 YP_002542725.1 CDS trbB NC_011984.1 209761 210732 R VirB11 family protein; ATPase; conjugal transfer protein TrbB complement(209761..210732) Agrobacterium vitis S4 7367865 YP_002542726.1 CDS traI NC_011984.1 210729 211367 R putative autoinducer synthesis protein complement(210729..211367) Agrobacterium vitis S4 7367866 YP_002546471.1 CDS repA NC_011986.1 206 1435 D replication protein A 206..1435 Agrobacterium vitis S4 7380026 YP_002546472.1 CDS repB NC_011986.1 1481 2518 D replication protein B 1481..2518 Agrobacterium vitis S4 7379946 YP_002546473.1 CDS repC NC_011986.1 2673 3887 D replication initiation protein RepC 2673..3887 Agrobacterium vitis S4 7379947 YP_002546474.1 CDS Avi_9804 NC_011986.1 4021 4503 R helix turn helix transcriptional regulator complement(4021..4503) Agrobacterium vitis S4 7379948 YP_002546475.1 CDS Avi_9805 NC_011986.1 5117 5581 R hypothetical protein complement(5117..5581) Agrobacterium vitis S4 7379949 YP_002546476.1 CDS parA NC_011986.1 5586 6287 R chromosome partitioning protein complement(5586..6287) Agrobacterium vitis S4 7379950 YP_002546477.1 CDS Avi_9807 NC_011986.1 6996 7397 D mob protein 6996..7397 Agrobacterium vitis S4 7379951 YP_002546478.1 CDS traA NC_011986.1 7399 10161 D Ti-type conjugative transfer relaxase TraA 7399..10161 Agrobacterium vitis S4 7379952 YP_002546479.1 CDS avhD4 NC_011986.1 10420 12519 R conjugative coupling protein complement(10420..12519) Agrobacterium vitis S4 7379953 YP_002546480.1 CDS avhB11 NC_011986.1 12516 13538 R type IV secretion protein AvhB11 complement(12516..13538) Agrobacterium vitis S4 7379954 YP_002546481.1 CDS avhB10 NC_011986.1 13519 14727 R type IV secretion protein AvhB10 complement(13519..14727) Agrobacterium vitis S4 7379955 YP_002546482.1 CDS avhB9 NC_011986.1 14727 15536 R type IV secretion protein AvhB9 complement(14727..15536) Agrobacterium vitis S4 7379956 YP_002546483.1 CDS avhB8 NC_011986.1 15533 16225 R Type IV secretory pathway component VirB8 complement(15533..16225) Agrobacterium vitis S4 7379957 YP_002546484.1 CDS avhB6 NC_011986.1 16261 17289 R type IV secretion protein AvhB6 complement(16261..17289) Agrobacterium vitis S4 7379958 YP_002546485.1 CDS Avi_9817 NC_011986.1 17302 17529 R hypothetical protein complement(17302..17529) Agrobacterium vitis S4 7379959 YP_002546486.1 CDS Avi_9818 NC_011986.1 17522 18220 R hypothetical protein complement(17522..18220) Agrobacterium vitis S4 7379960 YP_002546487.1 CDS avhB1b NC_011986.1 18233 19321 R type IV system transglycosylase complement(18233..19321) Agrobacterium vitis S4 7379961 YP_002546488.1 CDS avhB4 NC_011986.1 19318 21777 R type IV secretion protein AvhB4 complement(19318..21777) Agrobacterium vitis S4 7379962 YP_002546489.1 CDS avhB2 NC_011986.1 22081 22431 R type IV secrection system pilin protein complement(22081..22431) Agrobacterium vitis S4 7379963 YP_002546490.1 CDS avhB1a NC_011986.1 22444 23412 R type IV system transglycosylase complement(22444..23412) Agrobacterium vitis S4 7379964 YP_002546491.1 CDS Avi_9825 NC_011986.1 23570 24178 D hypothetical protein 23570..24178 Agrobacterium vitis S4 7379965 YP_002546492.1 CDS Avi_9826 NC_011986.1 24175 24714 D hypothetical protein 24175..24714 Agrobacterium vitis S4 7379966 YP_002546493.1 CDS Avi_9827 NC_011986.1 24711 25415 D Micrococcal nuclease (thermonuclease) 24711..25415 Agrobacterium vitis S4 7379967 YP_002546494.1 CDS Avi_9829 NC_011986.1 25416 25796 D hypothetical protein 25416..25796 Agrobacterium vitis S4 7379968 YP_002546495.1 CDS Avi_9830 NC_011986.1 25801 26397 D hypothetical protein 25801..26397 Agrobacterium vitis S4 7379969 YP_002546496.1 CDS Avi_9831 NC_011986.1 26408 26833 D hypothetical protein 26408..26833 Agrobacterium vitis S4 7379970 YP_002546497.1 CDS Avi_9832 NC_011986.1 26850 27182 R hypothetical protein complement(26850..27182) Agrobacterium vitis S4 7379971 YP_002546498.1 CDS Avi_9833 NC_011986.1 27576 28208 D Resolvase Protein 27576..28208 Agrobacterium vitis S4 7379972 YP_002546499.1 CDS Avi_9834 NC_011986.1 28344 29264 R hypothetical protein complement(28344..29264) Agrobacterium vitis S4 7379973 YP_002546500.1 CDS tnp NC_011986.1 29463 31016 D transposase 29463..31016 Agrobacterium vitis S4 7379974 YP_002546501.1 CDS Avi_9836 NC_011986.1 31029 31805 D transposase 31029..31805 Agrobacterium vitis S4 7379975 YP_002546502.1 CDS Avi_9837 NC_011986.1 32043 32372 D transposase protein 32043..32372 Agrobacterium vitis S4 7379976 YP_002546503.1 CDS tnp NC_011986.1 32369 33274 D transposase 32369..33274 Agrobacterium vitis S4 7379977 YP_002546504.1 CDS Avi_9841 NC_011986.1 33821 35170 R adenylate cyclase protein complement(33821..35170) Agrobacterium vitis S4 7379978 YP_002546505.1 CDS Avi_9842 NC_011986.1 35256 35540 R hypothetical protein complement(35256..35540) Agrobacterium vitis S4 7379979 YP_002546506.1 CDS copC NC_011986.1 35563 36042 R copper tolerance protein complement(35563..36042) Agrobacterium vitis S4 7379980 YP_002546507.1 CDS Avi_9845 NC_011986.1 36182 36451 R hypothetical protein complement(36182..36451) Agrobacterium vitis S4 7379981 YP_002546508.1 CDS Avi_9846 NC_011986.1 36644 37321 D two component response regulator 36644..37321 Agrobacterium vitis S4 7379945 YP_002546509.1 CDS Avi_9847 NC_011986.1 37308 38681 D two component sensor kinase 37308..38681 Agrobacterium vitis S4 7379982 YP_002546510.1 CDS Avi_9848 NC_011986.1 38799 39083 R hypothetical protein complement(38799..39083) Agrobacterium vitis S4 7379983 YP_002546511.1 CDS copC NC_011986.1 39106 39585 R copper tolerance protein complement(39106..39585) Agrobacterium vitis S4 7379984 YP_002546512.1 CDS copA NC_011986.1 39618 40967 R multicopper oxidase complement(39618..40967) Agrobacterium vitis S4 7379985 YP_002546513.1 CDS copB NC_011986.1 40981 42441 R copper tolerance protein complement(40981..42441) Agrobacterium vitis S4 7379986 YP_002546514.1 CDS Avi_9852 NC_011986.1 42438 42707 R hypothetical protein complement(42438..42707) Agrobacterium vitis S4 7379987 YP_002546515.1 CDS Avi_9853 NC_011986.1 42755 43141 R hypothetical protein complement(42755..43141) Agrobacterium vitis S4 7379988 YP_002546516.1 CDS Avi_9854 NC_011986.1 43389 43733 D hypothetical protein 43389..43733 Agrobacterium vitis S4 7379989 YP_002546517.1 CDS Avi_9856 NC_011986.1 43776 44204 D hypothetical protein 43776..44204 Agrobacterium vitis S4 7379990 YP_002546518.1 CDS Avi_9857 NC_011986.1 44214 44552 D hypothetical protein 44214..44552 Agrobacterium vitis S4 7379991 YP_002546519.1 CDS Avi_9859 NC_011986.1 44651 46864 R copper-translocating P-type ATPase complement(44651..46864) Agrobacterium vitis S4 7379992 YP_002546520.1 CDS Avi_9861 NC_011986.1 47015 47299 R hypothetical protein complement(47015..47299) Agrobacterium vitis S4 7379993 YP_002546521.1 CDS Avi_9862 NC_011986.1 47523 48107 D cytochrome C-like protein 47523..48107 Agrobacterium vitis S4 7379994 YP_002546522.1 CDS cueR NC_011986.1 48119 48562 R Cu(I)-responsive transcriptional regulator complement(48119..48562) Agrobacterium vitis S4 7379995 YP_002546523.1 CDS Avi_9864 NC_011986.1 48578 51058 R heavy-metal transporting P-type ATPase complement(48578..51058) Agrobacterium vitis S4 7379996 YP_002546524.1 CDS Avi_9865 NC_011986.1 51211 51414 R hypothetical protein complement(51211..51414) Agrobacterium vitis S4 7379997 YP_002546525.1 CDS Avi_9866 NC_011986.1 51607 51993 D hypothetical protein 51607..51993 Agrobacterium vitis S4 7379998 YP_002546526.1 CDS Avi_9867 NC_011986.1 52116 52520 D hypothetical protein 52116..52520 Agrobacterium vitis S4 7379999 YP_002546527.1 CDS Avi_9868 NC_011986.1 52517 53944 D Membrane-fusion protein 52517..53944 Agrobacterium vitis S4 7380000 YP_002546528.1 CDS Avi_9869 NC_011986.1 53941 57102 D AcrB/AcrD/AcrF family protein 53941..57102 Agrobacterium vitis S4 7380001 YP_002546529.1 CDS Avi_9870 NC_011986.1 57117 57572 D hypothetical protein 57117..57572 Agrobacterium vitis S4 7380002 YP_002546530.1 CDS Avi_9871 NC_011986.1 57784 58347 R hypothetical protein complement(57784..58347) Agrobacterium vitis S4 7380003 YP_002546531.1 CDS Avi_9872 NC_011986.1 58507 58983 R hypothetical protein complement(58507..58983) Agrobacterium vitis S4 7380004 YP_002546532.1 CDS Avi_9873 NC_011986.1 59346 59786 R hypothetical protein complement(59346..59786) Agrobacterium vitis S4 7380005 YP_002546533.1 CDS Avi_9874 NC_011986.1 59946 60419 D polysaccharide inhibition protein 59946..60419 Agrobacterium vitis S4 7380006 YP_002546534.1 CDS Avi_9875 NC_011986.1 60578 61432 D hypothetical protein 60578..61432 Agrobacterium vitis S4 7380007 YP_002546535.1 CDS Avi_9878 NC_011986.1 61815 62087 R hypothetical protein complement(61815..62087) Agrobacterium vitis S4 7380008 YP_002546536.1 CDS Avi_9879 NC_011986.1 62304 62609 D hypothetical protein 62304..62609 Agrobacterium vitis S4 7380009 YP_002546537.1 CDS Avi_9881 NC_011986.1 63491 63730 D hypothetical protein 63491..63730 Agrobacterium vitis S4 7380010 YP_002546538.1 CDS Avi_9882 NC_011986.1 63730 64164 D hypothetical protein 63730..64164 Agrobacterium vitis S4 7380011 YP_002546539.1 CDS Avi_9884 NC_011986.1 64503 64832 R hypothetical protein complement(64503..64832) Agrobacterium vitis S4 7380012 YP_002546540.1 CDS Avi_9887 NC_011986.1 64947 66536 D transmembrane protein 64947..66536 Agrobacterium vitis S4 7380013 YP_002546541.1 CDS Avi_9888 NC_011986.1 66526 67527 D hypothetical protein 66526..67527 Agrobacterium vitis S4 7380014 YP_002546542.1 CDS Avi_9890 NC_011986.1 67980 68315 R hypothetical protein complement(67980..68315) Agrobacterium vitis S4 7380015 YP_002546543.1 CDS Avi_9896 NC_011986.1 69538 71475 D transcriptional regulator 69538..71475 Agrobacterium vitis S4 7380016 YP_002546544.1 CDS Avi_9897 NC_011986.1 71437 71979 R hypothetical protein complement(71437..71979) Agrobacterium vitis S4 7380017 YP_002546545.1 CDS tnp NC_011986.1 72227 73132 R transposase complement(72227..73132) Agrobacterium vitis S4 7380018 YP_002546546.1 CDS Avi_9899 NC_011986.1 73129 73458 R hypothetical protein complement(73129..73458) Agrobacterium vitis S4 7380019 YP_002546547.1 CDS repC NC_011986.1 73663 74943 D replication protein C 73663..74943 Agrobacterium vitis S4 7380020 YP_002546548.1 CDS exoI NC_011986.1 74940 75446 D succinoglycan biosynthesis protein 74940..75446 Agrobacterium vitis S4 7380021 YP_002546549.1 CDS Avi_9904 NC_011986.1 75848 76183 D hypothetical protein 75848..76183 Agrobacterium vitis S4 7380022 YP_002546550.1 CDS Avi_9906 NC_011986.1 76304 76510 D hypothetical protein 76304..76510 Agrobacterium vitis S4 7380023 YP_002546551.1 CDS Avi_9907 NC_011986.1 76580 77644 D cell filamentation protein 76580..77644 Agrobacterium vitis S4 7380024 YP_002546552.1 CDS ardC NC_011986.1 77873 78730 D antirestriction protein 77873..78730 Agrobacterium vitis S4 7380025 YP_002546919.1 CDS repA NC_011988.1 287 1549 D replication protein A 287..1549 Agrobacterium vitis S4 7381168 YP_002546920.1 CDS repB NC_011988.1 1546 2628 D replication protein B 1546..2628 Agrobacterium vitis S4 7381169 YP_002546921.1 CDS repC NC_011988.1 3579 4796 D replication initiation protein RepC 3579..4796 Agrobacterium vitis S4 7381170 YP_002546922.1 CDS Avi_5003 NC_011988.1 5079 6632 D phospholipase/phosphatidylserine synthase 5079..6632 Agrobacterium vitis S4 7381171 YP_002546923.1 CDS Avi_5004 NC_011988.1 6736 7689 R hypothetical protein complement(6736..7689) Agrobacterium vitis S4 7381172 YP_002546924.1 CDS Avi_5005 NC_011988.1 7754 8491 D hypothetical protein 7754..8491 Agrobacterium vitis S4 7381173 YP_002546925.1 CDS Avi_5006 NC_011988.1 8635 9459 R hypothetical protein complement(8635..9459) Agrobacterium vitis S4 7381174 YP_002546926.1 CDS Avi_5007 NC_011988.1 9913 10218 D hypothetical protein 9913..10218 Agrobacterium vitis S4 7381175 YP_002546927.1 CDS exoD NC_011988.1 10581 11219 D exoD protein 10581..11219 Agrobacterium vitis S4 7381176 YP_002546928.1 CDS Avi_5010 NC_011988.1 11250 11717 R transcriptional regulator AsnC family complement(11250..11717) Agrobacterium vitis S4 7381177 YP_002546929.1 CDS nocP1 NC_011988.1 11880 12659 D ABC transporter ATPase 11880..12659 Agrobacterium vitis S4 7381178 YP_002546930.1 CDS Avi_5014 NC_011988.1 12704 13474 D amino acid ABC transporter substrate-binding protein 12704..13474 Agrobacterium vitis S4 7381179 YP_002546931.1 CDS Avi_5015 NC_011988.1 13491 14213 D ABC transporter permease 13491..14213 Agrobacterium vitis S4 7381180 YP_002546932.1 CDS Avi_5016 NC_011988.1 14222 14911 D ABC transporter permease 14222..14911 Agrobacterium vitis S4 7381181 YP_002546933.1 CDS Avi_5017 NC_011988.1 14929 15834 D S-methyltransferase 14929..15834 Agrobacterium vitis S4 7381182 YP_002546934.1 CDS Avi_5018 NC_011988.1 15844 16827 R Fe3+ ABC transporter permease complement(15844..16827) Agrobacterium vitis S4 7381183 YP_002546935.1 CDS Avi_5019 NC_011988.1 16873 17832 R ABC transporter substrate binding protein (iron) complement(16873..17832) Agrobacterium vitis S4 7381184 YP_002546936.1 CDS Avi_5021 NC_011988.1 17855 19009 R ABC transporter nucleotide binding/ATPase (iron) complement(17855..19009) Agrobacterium vitis S4 7381185 YP_002546937.1 CDS Avi_5022 NC_011988.1 19201 20637 R amidohydrolase complement(19201..20637) Agrobacterium vitis S4 7381186 YP_002546938.1 CDS Avi_5023 NC_011988.1 20772 21050 R hypothetical protein complement(20772..21050) Agrobacterium vitis S4 7381187 YP_002546939.1 CDS glgA NC_011988.1 21047 22552 R glycogen synthase complement(21047..22552) Agrobacterium vitis S4 7381188 YP_002546940.1 CDS Avi_5025 NC_011988.1 22624 22941 R hypothetical protein complement(22624..22941) Agrobacterium vitis S4 7381189 YP_002546941.1 CDS Avi_5027 NC_011988.1 23186 23527 D hypothetical protein 23186..23527 Agrobacterium vitis S4 7381190 YP_002546942.1 CDS Avi_5028 NC_011988.1 23627 24220 R hypothetical protein complement(23627..24220) Agrobacterium vitis S4 7381191 YP_002546943.1 CDS Avi_5029 NC_011988.1 24625 25617 D hypothetical protein 24625..25617 Agrobacterium vitis S4 7381192 YP_002546944.1 CDS Avi_5030 NC_011988.1 25671 26702 R zinc-binding dehydrogenase complement(25671..26702) Agrobacterium vitis S4 7381193 YP_002546945.1 CDS Avi_5031 NC_011988.1 26713 27660 R 2-hydroxyacid dehydrogenase complement(26713..27660) Agrobacterium vitis S4 7381194 YP_002546946.1 CDS idnO NC_011988.1 27769 28527 D catalyzes the formation of 5-dehydro-D-gluconate from D-gluconate; gluconate 5-dehydrogenase 27769..28527 Agrobacterium vitis S4 7381195 YP_002546947.1 CDS gntK NC_011988.1 28529 29032 D gluconokinase 28529..29032 Agrobacterium vitis S4 7381196 YP_002546948.1 CDS garR NC_011988.1 29035 29919 D 2-hydroxy-3-oxopropionate reductase 29035..29919 Agrobacterium vitis S4 7381197 YP_002546949.1 CDS Avi_5036 NC_011988.1 29919 30251 D hypothetical protein 29919..30251 Agrobacterium vitis S4 7381198 YP_002546950.1 CDS Avi_5038 NC_011988.1 30378 31391 D transcriptional regulator LacI family 30378..31391 Agrobacterium vitis S4 7381199 YP_002546951.1 CDS Avi_5039 NC_011988.1 31437 32531 R sugar ABC transporter substrate-binding protein complement(31437..32531) Agrobacterium vitis S4 7381200 YP_002546952.1 CDS Avi_5041 NC_011988.1 32570 33628 R sugar ABC transporter permease complement(32570..33628) Agrobacterium vitis S4 7381201 YP_002546953.1 CDS Avi_5042 NC_011988.1 33645 35141 R ABC transporter nucleotide binding/ATPase (sugar) complement(33645..35141) Agrobacterium vitis S4 7381202 YP_002546954.1 CDS Avi_5044 NC_011988.1 36674 37006 D hypothetical protein 36674..37006 Agrobacterium vitis S4 7381203 YP_002546955.1 CDS Avi_5045 NC_011988.1 37788 38825 D hypothetical protein 37788..38825 Agrobacterium vitis S4 7381204 YP_002546956.1 CDS Avi_5046 NC_011988.1 38955 39917 D ABC transporter substrate binding protein (ribose) 38955..39917 Agrobacterium vitis S4 7381205 YP_002546957.1 CDS Avi_5049 NC_011988.1 40001 41539 D ABC transporter nucleotide binding/ATPase (ribose) 40001..41539 Agrobacterium vitis S4 7381206 YP_002546958.1 CDS Avi_5050 NC_011988.1 41536 42576 D ribose ABC transporter permease 41536..42576 Agrobacterium vitis S4 7381207 YP_002546959.1 CDS Avi_5051 NC_011988.1 42573 43553 D ribose ABC transporter permease 42573..43553 Agrobacterium vitis S4 7381208 YP_002546960.1 CDS Avi_5052 NC_011988.1 43550 44278 D transcriptional regulator 43550..44278 Agrobacterium vitis S4 7381209 YP_002546961.1 CDS vdh NC_011988.1 44354 45802 R vanillin: NAD oxidoreductase complement(44354..45802) Agrobacterium vitis S4 7381210 YP_002546962.1 CDS vdh NC_011988.1 45882 47408 R vanillin: NAD oxidoreductase complement(45882..47408) Agrobacterium vitis S4 7381211 YP_002546963.1 CDS Avi_5055 NC_011988.1 47628 48527 D AraC family transcriptional regulator 47628..48527 Agrobacterium vitis S4 7381212 YP_002546964.1 CDS Avi_5056 NC_011988.1 48665 49390 R hypothetical protein complement(48665..49390) Agrobacterium vitis S4 7381213 YP_002546965.1 CDS ilvD NC_011988.1 49408 51144 R catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase complement(49408..51144) Agrobacterium vitis S4 7381214 YP_002546966.1 CDS Avi_5058 NC_011988.1 51188 52057 R ABC transporter permease complement(51188..52057) Agrobacterium vitis S4 7381215 YP_002546967.1 CDS ssuB NC_011988.1 52062 52877 R ABC transporter nucleotide binding/ATPase (nitrate/sulfonates) complement(52062..52877) Agrobacterium vitis S4 7381216 YP_002546968.1 CDS Avi_5060 NC_011988.1 53069 54052 R ABC transporter substrate-binding protein complement(53069..54052) Agrobacterium vitis S4 7381217 YP_002546969.1 CDS Avi_5061 NC_011988.1 54302 55006 D GntR family transcriptional regulator 54302..55006 Agrobacterium vitis S4 7381218 YP_002546970.1 CDS Avi_5062 NC_011988.1 55427 56710 D oxidoreductase 55427..56710 Agrobacterium vitis S4 7381219 YP_002546971.1 CDS Avi_5063 NC_011988.1 56881 57480 D NAD(P)H-flavin oxidoreductase 56881..57480 Agrobacterium vitis S4 7381220 YP_002546972.1 CDS Avi_5064 NC_011988.1 57596 57991 D hypothetical protein 57596..57991 Agrobacterium vitis S4 7381221 YP_002546973.1 CDS cfa NC_011988.1 58678 59781 D cyclopropane-fatty-acyl-phospholipid synthase 58678..59781 Agrobacterium vitis S4 7381222 YP_002546974.1 CDS Avi_5067 NC_011988.1 59876 61366 D sulfate permease 59876..61366 Agrobacterium vitis S4 7381223 YP_002546975.1 CDS uspA NC_011988.1 61378 62232 D Universal stress protein 61378..62232 Agrobacterium vitis S4 7381224 YP_002546976.1 CDS Avi_5070 NC_011988.1 62339 63541 D Major facilitator superfamily permease 62339..63541 Agrobacterium vitis S4 7381225 YP_002546977.1 CDS Avi_5072 NC_011988.1 63703 65487 R hypothetical protein complement(63703..65487) Agrobacterium vitis S4 7381226 YP_002546978.1 CDS Avi_5073 NC_011988.1 65889 66572 R TetR family transcriptional regulator complement(65889..66572) Agrobacterium vitis S4 7381227 YP_002546979.1 CDS Avi_5074 NC_011988.1 66801 68207 D oxidoreductase 66801..68207 Agrobacterium vitis S4 7381228 YP_002546980.1 CDS Avi_5075 NC_011988.1 68212 68739 D hypothetical protein 68212..68739 Agrobacterium vitis S4 7381229 YP_002546981.1 CDS Avi_5076 NC_011988.1 69066 70604 D major facilitator superfamily permease 69066..70604 Agrobacterium vitis S4 7381230 YP_002546982.1 CDS Avi_5077 NC_011988.1 70629 71237 D nitrilotriacetate monooxygenase 70629..71237 Agrobacterium vitis S4 7381231 YP_002546983.1 CDS Avi_5079 NC_011988.1 71280 72179 D oxidoreductase 71280..72179 Agrobacterium vitis S4 7381232 YP_002546984.1 CDS Avi_5080 NC_011988.1 72997 74346 D Carbohydrate-selective porin 72997..74346 Agrobacterium vitis S4 7381233 YP_002546985.1 CDS Avi_5081 NC_011988.1 74593 75489 D hypothetical protein 74593..75489 Agrobacterium vitis S4 7381234 YP_002546986.1 CDS Avi_5082 NC_011988.1 75500 76354 D 2-hydroxyhepta-24-diene-1 75500..76354 Agrobacterium vitis S4 7381235 YP_002546987.1 CDS Avi_5084 NC_011988.1 76833 77324 D CMP/dCMP deaminase zinc-binding 76833..77324 Agrobacterium vitis S4 7381236 YP_002546988.1 CDS Avi_5085 NC_011988.1 77346 78086 R GntR family transcriptional regulator complement(77346..78086) Agrobacterium vitis S4 7381237 YP_002546989.1 CDS Avi_5086 NC_011988.1 78435 79988 D ABC transporter substrate binding protein (dipeptide) 78435..79988 Agrobacterium vitis S4 7380899 YP_002546990.1 CDS bgl NC_011988.1 79990 81351 D beta-glucosidase 79990..81351 Agrobacterium vitis S4 7380900 YP_002546991.1 CDS Avi_5088 NC_011988.1 81376 82317 D peptide ABC transporter permease 81376..82317 Agrobacterium vitis S4 7380901 YP_002546992.1 CDS Avi_5089 NC_011988.1 82317 83198 D peptide ABC transporter permease 82317..83198 Agrobacterium vitis S4 7380902 YP_002546993.1 CDS Avi_5090 NC_011988.1 83201 84412 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 83201..84412 Agrobacterium vitis S4 7380903 YP_002546994.1 CDS Avi_5091 NC_011988.1 84452 84943 D hypothetical protein 84452..84943 Agrobacterium vitis S4 7380904 YP_002546995.1 CDS Avi_5093 NC_011988.1 84955 85782 R transcriptional regulator complement(84955..85782) Agrobacterium vitis S4 7380905 YP_002546996.1 CDS selA NC_011988.1 85879 87075 D L-seryl-tRNA(ser) selenium transferase 85879..87075 Agrobacterium vitis S4 7380906 YP_002546997.1 CDS Avi_5096 NC_011988.1 87500 89038 D GGDEF family protein 87500..89038 Agrobacterium vitis S4 7380907 YP_002546998.1 CDS Avi_5097 NC_011988.1 89305 90198 D hypothetical protein 89305..90198 Agrobacterium vitis S4 7380908 YP_002546999.1 CDS Avi_5101 NC_011988.1 90294 91097 D Transglutaminase domain-containing protein 90294..91097 Agrobacterium vitis S4 7380909 YP_002547000.1 CDS Avi_5102 NC_011988.1 91405 92076 D Permeases of the major facilitator superfamily 91405..92076 Agrobacterium vitis S4 7380910 YP_002547001.1 CDS Avi_5103 NC_011988.1 92361 92999 D oxidoreductase with iron-sulfur subunit 92361..92999 Agrobacterium vitis S4 7380911 YP_002547002.1 CDS Avi_5106 NC_011988.1 92996 93946 D oxidoreductase 92996..93946 Agrobacterium vitis S4 7380912 YP_002547003.1 CDS Avi_5107 NC_011988.1 93950 96148 D dehydrogenase 93950..96148 Agrobacterium vitis S4 7380913 YP_002547004.1 CDS Avi_5108 NC_011988.1 96470 98164 D two-component sensor 96470..98164 Agrobacterium vitis S4 7380914 YP_002547005.1 CDS Avi_5109 NC_011988.1 98265 99164 D LysR family transcriptional regulator 98265..99164 Agrobacterium vitis S4 7380915 YP_002547006.1 CDS Avi_5111 NC_011988.1 99220 99906 R hypothetical protein complement(99220..99906) Agrobacterium vitis S4 7380916 YP_002547007.1 CDS Avi_5112 NC_011988.1 100041 101228 R non-heme haloperoxidase complement(100041..101228) Agrobacterium vitis S4 7380917 YP_002547008.1 CDS fabG NC_011988.1 101290 101853 R 3-oxoacyl-ACP reductase complement(101290..101853) Agrobacterium vitis S4 7380918 YP_002547009.1 CDS greB NC_011988.1 102248 102733 D activates RNA polymerase to cleave back-tracked RNA during elongational pausing; transcription elongation factor regulatory protein 102248..102733 Agrobacterium vitis S4 7380919 YP_002547010.1 CDS melA NC_011988.1 102879 104240 R alpha-galactosidase complement(102879..104240) Agrobacterium vitis S4 7380920 YP_002547011.1 CDS Avi_5116 NC_011988.1 104266 105933 R ABC transporter nucleotide binding/ATPase (oligopeptide) complement(104266..105933) Agrobacterium vitis S4 7380921 YP_002547012.1 CDS Avi_5117 NC_011988.1 105946 107067 R peptide ABC transporter permease complement(105946..107067) Agrobacterium vitis S4 7380922 YP_002547013.1 CDS Avi_5118 NC_011988.1 107064 108077 R peptide ABC transporter permease complement(107064..108077) Agrobacterium vitis S4 7380923 YP_002547014.1 CDS agpA NC_011988.1 108151 110238 R ABC transporter substrate binding protein (alpha-galactoside) complement(108151..110238) Agrobacterium vitis S4 7380924 YP_002547015.1 CDS melA NC_011988.1 110353 111825 R alpha-galactosidase complement(110353..111825) Agrobacterium vitis S4 7380925 YP_002547016.1 CDS agpT NC_011988.1 112016 112960 D AraC family transcriptional regulator 112016..112960 Agrobacterium vitis S4 7380926 YP_002547017.1 CDS Avi_5123 NC_011988.1 113066 113461 R hypothetical protein complement(113066..113461) Agrobacterium vitis S4 7380927 YP_002547018.1 CDS Avi_5124 NC_011988.1 113531 114028 R hypothetical protein complement(113531..114028) Agrobacterium vitis S4 7380928 YP_002547019.1 CDS phoP NC_011988.1 114274 114942 D two component response regulator 114274..114942 Agrobacterium vitis S4 7380929 YP_002547020.1 CDS phoQ NC_011988.1 114939 116309 D two component sensor kinase 114939..116309 Agrobacterium vitis S4 7380930 YP_002547021.1 CDS Avi_5127 NC_011988.1 116429 117037 D molecular chaperone DnaJ family 116429..117037 Agrobacterium vitis S4 7380931 YP_002547022.1 CDS Avi_5128 NC_011988.1 117104 118117 R zinc-binding dehydrogenase complement(117104..118117) Agrobacterium vitis S4 7380932 YP_002547023.1 CDS Avi_5129 NC_011988.1 118171 119460 R hypothetical protein complement(118171..119460) Agrobacterium vitis S4 7380933 YP_002547024.1 CDS Avi_5130 NC_011988.1 119703 120515 R hypothetical protein complement(119703..120515) Agrobacterium vitis S4 7380934 YP_002547025.1 CDS Avi_5131 NC_011988.1 120518 121522 R oxidoreductase complement(120518..121522) Agrobacterium vitis S4 7380935 YP_002547026.1 CDS rbsB NC_011988.1 121592 122533 R ABC transporter substrate binding protein (ribose) complement(121592..122533) Agrobacterium vitis S4 7380936 YP_002547027.1 CDS rbsC NC_011988.1 122632 123681 R ribose ABC transporter permease complement(122632..123681) Agrobacterium vitis S4 7380937 YP_002547028.1 CDS rbsA NC_011988.1 123674 125248 R ABC transporter nucleotide binding/ATPase (ribose) complement(123674..125248) Agrobacterium vitis S4 7380938 YP_002547029.1 CDS Avi_5136 NC_011988.1 125415 126086 D GntR family transcriptional regulator 125415..126086 Agrobacterium vitis S4 7380939 YP_002547030.1 CDS Avi_5137 NC_011988.1 126281 127582 D extracellular solute-binding protein 126281..127582 Agrobacterium vitis S4 7380940 YP_002547031.1 CDS malF NC_011988.1 127678 128505 D maltose ABC transporter permease 127678..128505 Agrobacterium vitis S4 7380941 YP_002547032.1 CDS aglG NC_011988.1 128502 129326 D ABC transporter permease 128502..129326 Agrobacterium vitis S4 7380942 YP_002547033.1 CDS Avi_5140 NC_011988.1 129387 130469 D ABC transporter nucleotide binding/ATPase (sugar) 129387..130469 Agrobacterium vitis S4 7380943 YP_002547034.1 CDS Avi_5141 NC_011988.1 130508 132733 D hypothetical protein 130508..132733 Agrobacterium vitis S4 7380944 YP_002547035.1 CDS Avi_5142 NC_011988.1 132809 134881 D hypothetical protein 132809..134881 Agrobacterium vitis S4 7380945 YP_002547036.1 CDS Avi_5143 NC_011988.1 134941 135972 D transcriptional regulator LacI family 134941..135972 Agrobacterium vitis S4 7380946 YP_002547037.1 CDS Avi_5146 NC_011988.1 136830 137720 D ABC transporter nucleotide binding/ATPase (branched chain amino acid) 136830..137720 Agrobacterium vitis S4 7380947 YP_002547038.1 CDS Avi_5147 NC_011988.1 137717 138616 D branched-chain amino acid ABC transporter permease 137717..138616 Agrobacterium vitis S4 7380948 YP_002547039.1 CDS Avi_5148 NC_011988.1 138620 139675 D branched-chain amino acid ABC transporter permease 138620..139675 Agrobacterium vitis S4 7380949 YP_002547040.1 CDS Avi_5149 NC_011988.1 139777 141111 D hypothetical protein 139777..141111 Agrobacterium vitis S4 7380950 YP_002547041.1 CDS Avi_5150 NC_011988.1 141303 142076 D ABC transporter nucleotide binding/ATPase (branched chain amino acid) 141303..142076 Agrobacterium vitis S4 7380951 YP_002547042.1 CDS mcpC NC_011988.1 142294 144624 R methyl-accepting chemotaxis protein complement(142294..144624) Agrobacterium vitis S4 7380952 YP_002547043.1 CDS Avi_5152 NC_011988.1 144962 146326 D nitrilotriacetate monooxygenase 144962..146326 Agrobacterium vitis S4 7380953 YP_002547044.1 CDS Avi_5154 NC_011988.1 146569 147972 D nitrilotriacetate monooxygenase 146569..147972 Agrobacterium vitis S4 7380954 YP_002547045.1 CDS acd NC_011988.1 148007 149275 D acyl-CoA dehydrogenase 148007..149275 Agrobacterium vitis S4 7380955 YP_002547046.1 CDS acd NC_011988.1 149297 150559 D acyl-CoA dehydrogenase 149297..150559 Agrobacterium vitis S4 7380956 YP_002547047.1 CDS Avi_5157 NC_011988.1 150631 151674 D hypothetical protein 150631..151674 Agrobacterium vitis S4 7380957 YP_002547048.1 CDS Avi_5158 NC_011988.1 151739 152992 R hypothetical protein complement(151739..152992) Agrobacterium vitis S4 7380958 YP_002547049.1 CDS Avi_5159 NC_011988.1 153026 154069 R ABC transporter binding protein complement(153026..154069) Agrobacterium vitis S4 7380959 YP_002547050.1 CDS rbsC NC_011988.1 154101 155147 R ribose ABC transporter permease complement(154101..155147) Agrobacterium vitis S4 7380960 YP_002547051.1 CDS rbsA NC_011988.1 155147 156628 R ABC transporter nucleotide binding/ATPase (ribose) complement(155147..156628) Agrobacterium vitis S4 7380961 YP_002547052.1 CDS Avi_5162 NC_011988.1 156998 158044 D ABC transporter binding protein 156998..158044 Agrobacterium vitis S4 7380962 YP_002547053.1 CDS Avi_5163 NC_011988.1 158120 159442 R O-acetylhomoserine sulfhydrylase complement(158120..159442) Agrobacterium vitis S4 7380963 YP_002547054.1 CDS rbsB NC_011988.1 159786 160799 D ABC transporter substrate binding protein (ribose) 159786..160799 Agrobacterium vitis S4 7380964 YP_002547055.1 CDS rbsA NC_011988.1 160872 162425 D ABC transporter nucleotide binding/ATPase (ribose) 160872..162425 Agrobacterium vitis S4 7380965 YP_002547056.1 CDS rbsC NC_011988.1 162415 163464 D ribose ABC transporter permease 162415..163464 Agrobacterium vitis S4 7380966 YP_002547057.1 CDS Avi_5169 NC_011988.1 163472 164473 D sugar ABC transporter permease 163472..164473 Agrobacterium vitis S4 7380967 YP_002547058.1 CDS Avi_5170 NC_011988.1 164714 165550 D amino acid ABC transporter substrate-binding protein 164714..165550 Agrobacterium vitis S4 7380968 YP_002547059.1 CDS Avi_5171 NC_011988.1 165712 166458 D amino acid ABC transporter permease 165712..166458 Agrobacterium vitis S4 7380969 YP_002547060.1 CDS Avi_5172 NC_011988.1 166455 167237 D amino acid ABC transporter permease 166455..167237 Agrobacterium vitis S4 7380970 YP_002547061.1 CDS Avi_5173 NC_011988.1 167250 168035 D ABC transporter nucleotide binding/ATPase (amino acid) 167250..168035 Agrobacterium vitis S4 7380971 YP_002547062.1 CDS Avi_5175 NC_011988.1 168044 169405 D hypothetical protein 168044..169405 Agrobacterium vitis S4 7380972 YP_002547063.1 CDS Avi_5176 NC_011988.1 169438 170727 D monooxygenase 169438..170727 Agrobacterium vitis S4 7380973 YP_002547064.1 CDS Avi_5177 NC_011988.1 170735 171736 R Ketopantoate reductase complement(170735..171736) Agrobacterium vitis S4 7380974 YP_002547065.1 CDS Avi_5178 NC_011988.1 171736 172917 R acyl-CoA dehydrogenase-related protein complement(171736..172917) Agrobacterium vitis S4 7380975 YP_002547066.1 CDS ssuD NC_011988.1 173070 174173 R sulfonate monooxygenase complement(173070..174173) Agrobacterium vitis S4 7380976 YP_002547067.1 CDS Avi_5180 NC_011988.1 174340 175425 R monooxygenase complement(174340..175425) Agrobacterium vitis S4 7380977 YP_002547068.1 CDS moaD NC_011988.1 175422 177158 R ABC transporter ATPase complement(175422..177158) Agrobacterium vitis S4 7380978 YP_002547069.1 CDS dppC NC_011988.1 177137 177985 R peptide ABC transporter permease complement(177137..177985) Agrobacterium vitis S4 7380979 YP_002547070.1 CDS Avi_5183 NC_011988.1 177982 178992 R peptide ABC transporter permease complement(177982..178992) Agrobacterium vitis S4 7380980 YP_002547071.1 CDS Avi_5184 NC_011988.1 179017 180669 R ABC-type transporter substrate binding protein complement(179017..180669) Agrobacterium vitis S4 7381321 YP_002547072.1 CDS Avi_5186 NC_011988.1 181293 184463 D outer membrane autotransporter 181293..184463 Agrobacterium vitis S4 7381322 YP_002547073.1 CDS invB NC_011988.1 184463 184990 D Invasion protein B 184463..184990 Agrobacterium vitis S4 7381323 YP_002547074.1 CDS Avi_5188 NC_011988.1 185225 185887 D two component response regulator 185225..185887 Agrobacterium vitis S4 7381324 YP_002547075.1 CDS Avi_5189 NC_011988.1 185858 187477 R Signal transduction histidine kinase complement(185858..187477) Agrobacterium vitis S4 7381325 YP_002547076.1 CDS katA NC_011988.1 187946 190129 R catalase complement(187946..190129) Agrobacterium vitis S4 7381326 YP_002547077.1 CDS Avi_5192 NC_011988.1 190980 191459 R hypothetical protein complement(190980..191459) Agrobacterium vitis S4 7381327 YP_002547078.1 CDS dapA NC_011988.1 191548 192489 R dihydrodipicolinate synthase complement(191548..192489) Agrobacterium vitis S4 7381328 YP_002547079.1 CDS Avi_5194 NC_011988.1 192570 193880 R Permeases of the major facilitator superfamily complement(192570..193880) Agrobacterium vitis S4 7381329 YP_002547080.1 CDS Avi_5195 NC_011988.1 194252 195328 D transcriptional regulator LacI family 194252..195328 Agrobacterium vitis S4 7381330 YP_002547081.1 CDS Avi_5196 NC_011988.1 195955 196950 D hypothetical protein 195955..196950 Agrobacterium vitis S4 7381331 YP_002547082.1 CDS Avi_5198 NC_011988.1 197025 198317 D monooxygenase 197025..198317 Agrobacterium vitis S4 7381332 YP_002547083.1 CDS Avi_5199 NC_011988.1 198440 199651 D hippurate hydrolase 198440..199651 Agrobacterium vitis S4 7381333 YP_002547084.1 CDS Avi_5200 NC_011988.1 199667 200209 D acetyltransferase 199667..200209 Agrobacterium vitis S4 7381334 YP_002547085.1 CDS Avi_5205 NC_011988.1 202072 203010 D ABC transporter substrate-binding protein 202072..203010 Agrobacterium vitis S4 7381336 YP_002547086.1 CDS Avi_5206 NC_011988.1 203068 204003 D ABC transporter substrate-binding protein 203068..204003 Agrobacterium vitis S4 7381337 YP_002547087.1 CDS Avi_5208 NC_011988.1 204047 205126 D monooxygenase 204047..205126 Agrobacterium vitis S4 7381338 YP_002547088.1 CDS envZ NC_011988.1 205200 206522 R two component sensor kinase complement(205200..206522) Agrobacterium vitis S4 7381339 YP_002547089.1 CDS petR NC_011988.1 206515 207240 R two component response regulator complement(206515..207240) Agrobacterium vitis S4 7381340 YP_002547090.1 CDS Avi_5211 NC_011988.1 207483 208559 D HlyD family secretion protein 207483..208559 Agrobacterium vitis S4 7381341 YP_002547091.1 CDS Avi_5212 NC_011988.1 208556 211660 D AcrB/AcrD/AcrF family protein 208556..211660 Agrobacterium vitis S4 7381342 YP_002547092.1 CDS Avi_5213 NC_011988.1 211816 212613 D hypothetical protein 211816..212613 Agrobacterium vitis S4 7381343 YP_002547093.1 CDS Avi_5215 NC_011988.1 212692 213627 R AraC family transcriptional regulator complement(212692..213627) Agrobacterium vitis S4 7381344 YP_002547094.1 CDS Avi_5216 NC_011988.1 213879 215264 D nitrilotriacetate monooxygenase 213879..215264 Agrobacterium vitis S4 7381345 YP_002547095.1 CDS Avi_5217 NC_011988.1 215384 215833 D flavoprotein oxidoreductase 215384..215833 Agrobacterium vitis S4 7381346 YP_002547096.1 CDS Avi_5218 NC_011988.1 216095 217585 R Permeases of the major facilitator superfamily complement(216095..217585) Agrobacterium vitis S4 7381347 YP_002547097.1 CDS Avi_5219 NC_011988.1 217671 218972 R oxidoreductase complement(217671..218972) Agrobacterium vitis S4 7381348 YP_002547098.1 CDS Avi_5221 NC_011988.1 219306 219827 R hypothetical protein complement(219306..219827) Agrobacterium vitis S4 7381349 YP_002547099.1 CDS Avi_5222 NC_011988.1 220317 220856 R transcriptional regulator complement(220317..220856) Agrobacterium vitis S4 7381350 YP_002547100.1 CDS Avi_5223 NC_011988.1 221145 222434 D oxidoreductase 221145..222434 Agrobacterium vitis S4 7381351 YP_002547101.1 CDS Avi_5224 NC_011988.1 222434 223600 D hypothetical protein 222434..223600 Agrobacterium vitis S4 7381352 YP_002547102.1 CDS fadL NC_011988.1 223660 224841 R long-chain fatty acid transport protein complement(223660..224841) Agrobacterium vitis S4 7381353 YP_002547103.1 CDS Avi_5226 NC_011988.1 225377 226816 R aldehyde dehydrogenase complement(225377..226816) Agrobacterium vitis S4 7381354 YP_002547104.1 CDS Avi_5227 NC_011988.1 226820 227971 R MFS permease complement(226820..227971) Agrobacterium vitis S4 7381355 YP_002547105.1 CDS Avi_5228 NC_011988.1 228408 229439 D AraC family transcriptional regulator 228408..229439 Agrobacterium vitis S4 7381356 YP_002547106.1 CDS Avi_5229 NC_011988.1 229570 231168 D xylulose kinase 229570..231168 Agrobacterium vitis S4 7381357 YP_002547107.1 CDS Avi_5230 NC_011988.1 231161 231814 D L-fuculose-phosphate aldolase 231161..231814 Agrobacterium vitis S4 7381358 YP_002547108.1 CDS atrB NC_011988.1 231816 233276 D glutamate-1-semialdehyde aminotransferase 231816..233276 Agrobacterium vitis S4 7381359 YP_002547109.1 CDS Avi_5232 NC_011988.1 233284 233967 D hypothetical protein 233284..233967 Agrobacterium vitis S4 7381360 YP_002547110.1 CDS Avi_5234 NC_011988.1 234179 235228 D hypothetical protein 234179..235228 Agrobacterium vitis S4 7381361 YP_002547111.1 CDS Avi_5235 NC_011988.1 235257 236084 D oxidoreductase 235257..236084 Agrobacterium vitis S4 7381362 YP_002547112.1 CDS Avi_5237 NC_011988.1 236171 236833 D hypothetical protein 236171..236833 Agrobacterium vitis S4 7381363 YP_002547113.1 CDS Avi_5238 NC_011988.1 236944 238167 R hypothetical protein complement(236944..238167) Agrobacterium vitis S4 7381364 YP_002547114.1 CDS Avi_5240 NC_011988.1 238171 239745 R hypothetical protein complement(238171..239745) Agrobacterium vitis S4 7381365 YP_002547115.1 CDS Avi_5241 NC_011988.1 239822 240271 R hypothetical protein complement(239822..240271) Agrobacterium vitis S4 7381366 YP_002547116.1 CDS Avi_5242 NC_011988.1 240268 240705 R hypothetical protein complement(240268..240705) Agrobacterium vitis S4 7381367 YP_002547117.1 CDS sigW NC_011988.1 240698 241276 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(240698..241276) Agrobacterium vitis S4 7381368 YP_002547118.1 CDS phnA NC_011988.1 241574 241969 R alkylphosphonate uptake protein complement(241574..241969) Agrobacterium vitis S4 7381369 YP_002547119.1 CDS Avi_5248 NC_011988.1 242212 244641 D pyrroloquinoline-quinone-dependent quinate dehydrogenase 242212..244641 Agrobacterium vitis S4 7381370 YP_002547120.1 CDS Avi_5249 NC_011988.1 244751 245893 R transcriptional regulator ROK family complement(244751..245893) Agrobacterium vitis S4 7381371 YP_002547121.1 CDS Avi_5250 NC_011988.1 245990 247363 D ABC transporter substrate binding protein (sugar) 245990..247363 Agrobacterium vitis S4 7381372 YP_002547122.1 CDS Avi_5252 NC_011988.1 247433 248344 D sugar ABC transporter permease 247433..248344 Agrobacterium vitis S4 7381373 YP_002547123.1 CDS Avi_5253 NC_011988.1 248344 249408 D sugar ABC transporter permease 248344..249408 Agrobacterium vitis S4 7381374 YP_002547124.1 CDS Avi_5254 NC_011988.1 249414 250526 D ABC transporter nucleotide binding/ATPase (sugar) 249414..250526 Agrobacterium vitis S4 7381375 YP_002547125.1 CDS ugpQ NC_011988.1 250539 251261 D glycerophosphodiester phosphodiesterase 250539..251261 Agrobacterium vitis S4 7381376 YP_002547126.1 CDS Avi_5256 NC_011988.1 251366 252814 D hypothetical protein 251366..252814 Agrobacterium vitis S4 7381377 YP_002547127.1 CDS Avi_5257 NC_011988.1 252873 253247 R acetyltransferase complement(252873..253247) Agrobacterium vitis S4 7381378 YP_002547128.1 CDS Avi_5258 NC_011988.1 253450 253761 R hypothetical protein complement(253450..253761) Agrobacterium vitis S4 7381379 YP_002547129.1 CDS Avi_5259 NC_011988.1 253758 254432 R hypothetical protein complement(253758..254432) Agrobacterium vitis S4 7381380 YP_002547130.1 CDS Avi_5260 NC_011988.1 254829 260468 D hypothetical protein 254829..260468 Agrobacterium vitis S4 7381381 YP_002547131.1 CDS Avi_5261 NC_011988.1 260885 262903 D Valyl-tRNA synthetase 260885..262903 Agrobacterium vitis S4 7381382 YP_002547132.1 CDS Avi_5262 NC_011988.1 262944 264044 D hypothetical protein 262944..264044 Agrobacterium vitis S4 7381383 YP_002547133.1 CDS phaG NC_011988.1 264063 264431 R subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit G complement(264063..264431) Agrobacterium vitis S4 7381384 YP_002547134.1 CDS phaF NC_011988.1 264428 264709 R PH Adaption potassium efflux system complement(264428..264709) Agrobacterium vitis S4 7381385 YP_002547135.1 CDS phaE NC_011988.1 264706 265182 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E complement(264706..265182) Agrobacterium vitis S4 7381386 YP_002547136.1 CDS phaD NC_011988.1 265182 266813 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; putative monovalent cation/H+ antiporter subunit D complement(265182..266813) Agrobacterium vitis S4 7381387 YP_002547137.1 CDS phaC NC_011988.1 266810 267145 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C complement(266810..267145) Agrobacterium vitis S4 7381388 YP_002547138.1 CDS phaA NC_011988.1 267145 270048 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A complement(267145..270048) Agrobacterium vitis S4 7381389 YP_002547139.1 CDS Avi_5270 NC_011988.1 270661 271647 D hypothetical protein 270661..271647 Agrobacterium vitis S4 7381390 YP_002547140.1 CDS gatA NC_011988.1 271655 273064 D glutamyl-tRNA amidotransferase subunit A 271655..273064 Agrobacterium vitis S4 7381391 YP_002547141.1 CDS Avi_5272 NC_011988.1 273061 274581 D ABC transporter nucleotide binding/ATPase (sugar/ribonucleotide) 273061..274581 Agrobacterium vitis S4 7381392 YP_002547142.1 CDS Avi_5273 NC_011988.1 274571 275620 D sugar ABC transporter permease 274571..275620 Agrobacterium vitis S4 7381393 YP_002547143.1 CDS Avi_5274 NC_011988.1 275617 276561 D sugar ABC transporter permease 275617..276561 Agrobacterium vitis S4 7381394 YP_002547144.1 CDS Avi_5276 NC_011988.1 276755 277867 D Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase 276755..277867 Agrobacterium vitis S4 7381395 YP_002547145.1 CDS Avi_5277 NC_011988.1 277861 279468 R cytosine deaminase complement(277861..279468) Agrobacterium vitis S4 7381396 YP_002547146.1 CDS Avi_5278 NC_011988.1 279465 280511 R hypothetical protein complement(279465..280511) Agrobacterium vitis S4 7381397 YP_002547147.1 CDS Avi_5280 NC_011988.1 280508 281344 R creatinine amidohydrolase complement(280508..281344) Agrobacterium vitis S4 7381398 YP_002547148.1 CDS Avi_5281 NC_011988.1 281341 282822 R oxidoreductase complement(281341..282822) Agrobacterium vitis S4 7381399 YP_002547149.1 CDS Avi_5282 NC_011988.1 282815 283612 R ABC transporter complement(282815..283612) Agrobacterium vitis S4 7381400 YP_002547150.1 CDS potB NC_011988.1 283609 284487 R ABC transporter permease complement(283609..284487) Agrobacterium vitis S4 7381401 YP_002547151.1 CDS potG NC_011988.1 284484 285590 R ABC transporter nucleotide binding/ATPase (putrescine) complement(284484..285590) Agrobacterium vitis S4 7381402 YP_002547152.1 CDS potF NC_011988.1 285594 286676 R ABC transporter substrate binding protein (putrescine) complement(285594..286676) Agrobacterium vitis S4 7380653 YP_002547153.1 CDS Avi_5286 NC_011988.1 286789 287790 R LysR family transcriptional regulator complement(286789..287790) Agrobacterium vitis S4 7380654 YP_002547154.1 CDS Avi_5287 NC_011988.1 287951 290641 R two component response regulator complement(287951..290641) Agrobacterium vitis S4 7380655 YP_002547155.1 CDS gatA NC_011988.1 290717 292138 D glutamyl-tRNA amidotransferase subunit A 290717..292138 Agrobacterium vitis S4 7380656 YP_002547156.1 CDS Avi_5289 NC_011988.1 292179 293732 D ABC transporter 292179..293732 Agrobacterium vitis S4 7380657 YP_002547157.1 CDS Avi_5290 NC_011988.1 293788 294711 D peptide ABC transporter permease 293788..294711 Agrobacterium vitis S4 7380658 YP_002547158.1 CDS dppC NC_011988.1 294708 295556 D peptide ABC transporter permease 294708..295556 Agrobacterium vitis S4 7380659 YP_002547159.1 CDS moaD NC_011988.1 295553 296386 D ABC transporter ATPase 295553..296386 Agrobacterium vitis S4 7380660 YP_002547160.1 CDS moaD NC_011988.1 296383 297267 D ABC transporter ATPase 296383..297267 Agrobacterium vitis S4 7380661 YP_002547161.1 CDS Avi_5294 NC_011988.1 297354 299003 D ABC transporter nucleotide binding/ATPase (peptide) 297354..299003 Agrobacterium vitis S4 7380662 YP_002547162.1 CDS Avi_5296 NC_011988.1 299389 299838 D transcriptional regulator MarR family 299389..299838 Agrobacterium vitis S4 7380663 YP_002547163.1 CDS Avi_5297 NC_011988.1 299916 301247 D oxidoreductase 299916..301247 Agrobacterium vitis S4 7380664 YP_002547164.1 CDS Avi_5299 NC_011988.1 301451 303121 D ABC transporter substrate binding protein (oligopeptide) 301451..303121 Agrobacterium vitis S4 7380665 YP_002547165.1 CDS Avi_5300 NC_011988.1 303297 304247 D peptide ABC transporter permease 303297..304247 Agrobacterium vitis S4 7380666 YP_002547166.1 CDS Avi_5301 NC_011988.1 304280 305170 D peptide ABC transporter permease 304280..305170 Agrobacterium vitis S4 7380667 YP_002547167.1 CDS xylR NC_011988.1 305336 306475 D transcriptional regulator ROK family 305336..306475 Agrobacterium vitis S4 7380668 YP_002547168.1 CDS Avi_5304 NC_011988.1 306472 307239 D ABC transporter ATPase 306472..307239 Agrobacterium vitis S4 7380669 YP_002547169.1 CDS Avi_5305 NC_011988.1 307276 308316 D ABC transporter binding protein 307276..308316 Agrobacterium vitis S4 7380670 YP_002547170.1 CDS rbsC NC_011988.1 308369 309373 D ribose ABC transporter permease 308369..309373 Agrobacterium vitis S4 7380671 YP_002547171.1 CDS Avi_5308 NC_011988.1 309370 310140 D dehydrogenase 309370..310140 Agrobacterium vitis S4 7380672 YP_002547172.1 CDS Avi_5309 NC_011988.1 310237 310734 R Transcriptional regulator complement(310237..310734) Agrobacterium vitis S4 7380673 YP_002547173.1 CDS Avi_5310 NC_011988.1 310912 311457 D flavoprotein oxidoreductase 310912..311457 Agrobacterium vitis S4 7380674 YP_002547174.1 CDS Avi_5311 NC_011988.1 311704 312987 D indole dioxygenase 311704..312987 Agrobacterium vitis S4 7380675 YP_002547175.1 CDS Avi_5313 NC_011988.1 313060 314382 D MFS permease 313060..314382 Agrobacterium vitis S4 7380676 YP_002547176.1 CDS Avi_5314 NC_011988.1 314409 315788 D Carbohydrate-selective porin 314409..315788 Agrobacterium vitis S4 7380677 YP_002547177.1 CDS Avi_5315 NC_011988.1 315851 316270 D hypothetical protein 315851..316270 Agrobacterium vitis S4 7380678 YP_002547178.1 CDS attY NC_011988.1 316343 316933 D glutathione S-transferase 316343..316933 Agrobacterium vitis S4 7380679 YP_002547179.1 CDS Avi_5318 NC_011988.1 316946 317845 D oxidoreductase 316946..317845 Agrobacterium vitis S4 7380680 YP_002547180.1 CDS Avi_5319 NC_011988.1 318061 318951 D hypothetical protein 318061..318951 Agrobacterium vitis S4 7380681 YP_002547181.1 CDS Avi_5320 NC_011988.1 318967 319818 D fumarylacetoacetate (FAA) hydrolase family protein 318967..319818 Agrobacterium vitis S4 7380682 YP_002547182.1 CDS Avi_5321 NC_011988.1 319994 321124 D dehydrogenase 319994..321124 Agrobacterium vitis S4 7380683 YP_002547183.1 CDS Avi_5322 NC_011988.1 321142 322455 R glycosylase complement(321142..322455) Agrobacterium vitis S4 7380684 YP_002547184.1 CDS Avi_5324 NC_011988.1 322491 324770 R glycosyltransferase complement(322491..324770) Agrobacterium vitis S4 7380685 YP_002547185.1 CDS Avi_5325 NC_011988.1 324890 325237 R hypothetical protein complement(324890..325237) Agrobacterium vitis S4 7380686 YP_002547186.1 CDS catE NC_011988.1 325759 327915 R catalase C complement(325759..327915) Agrobacterium vitis S4 7380687 YP_002547187.1 CDS Avi_5327 NC_011988.1 328078 329682 R phosphate transporter complement(328078..329682) Agrobacterium vitis S4 7380688 YP_002547188.1 CDS Avi_5328 NC_011988.1 330054 331229 D ABC transporter ATPase 330054..331229 Agrobacterium vitis S4 7380689 YP_002547189.1 CDS Avi_5329 NC_011988.1 331226 332152 D ABC transporter permease 331226..332152 Agrobacterium vitis S4 7380690 YP_002547190.1 CDS Avi_5330 NC_011988.1 332149 332973 D ABC transporter 332149..332973 Agrobacterium vitis S4 7380691 YP_002547191.1 CDS Avi_5331 NC_011988.1 333017 334312 D ABC transporter substrate binding protein (sugar) 333017..334312 Agrobacterium vitis S4 7380692 YP_002547192.1 CDS vdh NC_011988.1 335340 336872 R vanillin: NAD oxidoreductase complement(335340..336872) Agrobacterium vitis S4 7380694 YP_002547193.1 CDS Avi_5336 NC_011988.1 337043 338479 R glucokinase complement(337043..338479) Agrobacterium vitis S4 7380695 YP_002547194.1 CDS Avi_5337 NC_011988.1 338494 339408 R aldolase complement(338494..339408) Agrobacterium vitis S4 7380696 YP_002547195.1 CDS Avi_5338 NC_011988.1 339684 340625 D transcriptional regulator 339684..340625 Agrobacterium vitis S4 7380697 YP_002547196.1 CDS rbsB NC_011988.1 340737 341726 D ABC transporter substrate binding protein (ribose) 340737..341726 Agrobacterium vitis S4 7380698 YP_002547197.1 CDS rbsC NC_011988.1 341848 342894 D ribose ABC transporter permease 341848..342894 Agrobacterium vitis S4 7380699 YP_002547198.1 CDS Avi_5342 NC_011988.1 342884 343633 D ABC transporter 342884..343633 Agrobacterium vitis S4 7380700 YP_002547199.1 CDS cbr NC_011988.1 343674 344402 D carbonyl reductase 343674..344402 Agrobacterium vitis S4 7380701 YP_002547200.1 CDS dapE NC_011988.1 344389 345795 R hypothetical protein complement(344389..345795) Agrobacterium vitis S4 7380702 YP_002547201.1 CDS mdeA NC_011988.1 345838 347010 R hypothetical protein complement(345838..347010) Agrobacterium vitis S4 7380703 YP_002547202.1 CDS Avi_5347 NC_011988.1 347007 347735 R GntR family transcriptional regulator complement(347007..347735) Agrobacterium vitis S4 7380704 YP_002547203.1 CDS dppA NC_011988.1 347965 349584 D ABC transporter substrate binding protein (dipeptide) 347965..349584 Agrobacterium vitis S4 7380705 YP_002547204.1 CDS dppB NC_011988.1 349915 350994 D peptide ABC transporter permease 349915..350994 Agrobacterium vitis S4 7380706 YP_002547205.1 CDS dppC NC_011988.1 351003 351956 D peptide ABC transporter permease 351003..351956 Agrobacterium vitis S4 7380707 YP_002547206.1 CDS Avi_5352 NC_011988.1 351928 352980 D ABC transporter nucleotide binding/ATPase (oligopeptide) 351928..352980 Agrobacterium vitis S4 7380708 YP_002547207.1 CDS Avi_5354 NC_011988.1 352977 353951 D ABC transporter nucleotide binding/ATPase (oligopeptide) 352977..353951 Agrobacterium vitis S4 7380709 YP_002547208.1 CDS Avi_5355 NC_011988.1 353972 355117 D proline dipeptidase 353972..355117 Agrobacterium vitis S4 7380710 YP_002547209.1 CDS Avi_5356 NC_011988.1 355234 355950 D GntR family transcriptional regulator 355234..355950 Agrobacterium vitis S4 7380711 YP_002547210.1 CDS dppA NC_011988.1 356002 357510 D ABC transporter substrate binding protein (dipeptide) 356002..357510 Agrobacterium vitis S4 7380712 YP_002547211.1 CDS dppB NC_011988.1 357611 358558 D peptide ABC transporter permease 357611..358558 Agrobacterium vitis S4 7380713 YP_002547212.1 CDS dppC NC_011988.1 358555 359424 D peptide ABC transporter permease 358555..359424 Agrobacterium vitis S4 7380714 YP_002547213.1 CDS ggt NC_011988.1 359472 361256 D gamma-glutamyltransferase 359472..361256 Agrobacterium vitis S4 7380715 YP_002547214.1 CDS moaD NC_011988.1 361301 363136 D ABC transporter ATPase 361301..363136 Agrobacterium vitis S4 7380716 YP_002547215.1 CDS gsp NC_011988.1 363164 364318 R glutathionylspermidine synthetase complement(363164..364318) Agrobacterium vitis S4 7380717 YP_002547216.1 CDS Avi_5364 NC_011988.1 364320 364922 R hypothetical protein complement(364320..364922) Agrobacterium vitis S4 7380718 YP_002547217.1 CDS Avi_5365 NC_011988.1 364933 365334 R hypothetical protein complement(364933..365334) Agrobacterium vitis S4 7380719 YP_002547218.1 CDS Avi_5366 NC_011988.1 365362 366021 R hypothetical protein complement(365362..366021) Agrobacterium vitis S4 7380720 YP_002547219.1 CDS Avi_5367 NC_011988.1 366301 366747 D hypothetical protein 366301..366747 Agrobacterium vitis S4 7380721 YP_002547220.1 CDS Avi_5368 NC_011988.1 366720 367481 D hypothetical protein 366720..367481 Agrobacterium vitis S4 7380722 YP_002547221.1 CDS Avi_5370 NC_011988.1 367573 368919 R dicarboxylate carrier protein complement(367573..368919) Agrobacterium vitis S4 7380723 YP_002547222.1 CDS fadD NC_011988.1 369048 370562 R catalyzes the formation of malonyl-CoA from malonate and CoA; malonyl-CoA synthase complement(369048..370562) Agrobacterium vitis S4 7380724 YP_002547223.1 CDS Avi_5372 NC_011988.1 370659 372056 R malonyl-CoA decarboxylase complement(370659..372056) Agrobacterium vitis S4 7380725 YP_002547224.1 CDS Avi_5373 NC_011988.1 372224 372874 D GntR family transcriptional regulator 372224..372874 Agrobacterium vitis S4 7380726 YP_002547225.1 CDS Avi_5374 NC_011988.1 372952 375291 D two component response regulator 372952..375291 Agrobacterium vitis S4 7380727 YP_002547226.1 CDS Avi_5375 NC_011988.1 375466 376494 D peptide ABC transporter permease 375466..376494 Agrobacterium vitis S4 7380728 YP_002547227.1 CDS Avi_5376 NC_011988.1 376491 377351 D peptide ABC transporter permease 376491..377351 Agrobacterium vitis S4 7380729 YP_002547228.1 CDS Avi_5377 NC_011988.1 377354 379021 D ABC transporter nucleotide binding/ATPase (dipeptide) 377354..379021 Agrobacterium vitis S4 7380730 YP_002547229.1 CDS Avi_5378 NC_011988.1 379047 380600 D hydantoinase 379047..380600 Agrobacterium vitis S4 7380731 YP_002547230.1 CDS Avi_5379 NC_011988.1 380597 381721 D hypothetical protein 380597..381721 Agrobacterium vitis S4 7381485 YP_002547231.1 CDS Avi_5380 NC_011988.1 381823 382800 D hypothetical protein 381823..382800 Agrobacterium vitis S4 7381486 YP_002547232.1 CDS Avi_5381 NC_011988.1 382841 384415 D ABC transporter substrate binding protein (dipeptide) 382841..384415 Agrobacterium vitis S4 7381487 YP_002547233.1 CDS Avi_5382 NC_011988.1 384434 384910 R two-component system regulatory protein complement(384434..384910) Agrobacterium vitis S4 7381488 YP_002547234.1 CDS Avi_5383 NC_011988.1 384907 387261 R Signal transduction histidine kinase complement(384907..387261) Agrobacterium vitis S4 7381489 YP_002547235.1 CDS narL NC_011988.1 387261 387911 R two component response regulator complement(387261..387911) Agrobacterium vitis S4 7381490 YP_002547236.1 CDS Avi_5386 NC_011988.1 387918 389003 R two component sensor kinase complement(387918..389003) Agrobacterium vitis S4 7381491 YP_002547237.1 CDS Avi_5387 NC_011988.1 389202 389666 D hypothetical signal peptide protein 389202..389666 Agrobacterium vitis S4 7381492 YP_002547238.1 CDS Avi_5388 NC_011988.1 389727 391001 R glucose/galactose transporter complement(389727..391001) Agrobacterium vitis S4 7381493 YP_002547239.1 CDS Avi_5390 NC_011988.1 391433 392470 R ABC transporter ATPase complement(391433..392470) Agrobacterium vitis S4 7381494 YP_002547240.1 CDS cysW NC_011988.1 392485 393354 R sulfate ABC transporter permease CysW complement(392485..393354) Agrobacterium vitis S4 7381495 YP_002547241.1 CDS cysT NC_011988.1 393341 394198 R sulfate ABC transporter permease CysT complement(393341..394198) Agrobacterium vitis S4 7381496 YP_002547242.1 CDS Avi_5393 NC_011988.1 394226 395242 R ABC transporter substrate binding protein (sulfate) complement(394226..395242) Agrobacterium vitis S4 7381497 YP_002547243.1 CDS thuR NC_011988.1 395436 396473 R transcriptional regulator LacI family complement(395436..396473) Agrobacterium vitis S4 7381498 YP_002547244.1 CDS Avi_5395 NC_011988.1 396927 397967 D hypothetical protein 396927..397967 Agrobacterium vitis S4 7381499 YP_002547245.1 CDS Avi_5396 NC_011988.1 397974 398912 D hypothetical protein 397974..398912 Agrobacterium vitis S4 7381500 YP_002547246.1 CDS Avi_5398 NC_011988.1 399009 400220 D ABC transporter substrate binding protein (sugar) 399009..400220 Agrobacterium vitis S4 7381501 YP_002547247.1 CDS thuF NC_011988.1 400358 401260 D sugar ABC transporter permease 400358..401260 Agrobacterium vitis S4 7381502 YP_002547248.1 CDS Avi_5400 NC_011988.1 401257 402084 D sugar ABC transporter permease 401257..402084 Agrobacterium vitis S4 7381503 YP_002547249.1 CDS Avi_5401 NC_011988.1 402081 403181 D ABC transporter ATPase 402081..403181 Agrobacterium vitis S4 7381504 YP_002547250.1 CDS Avi_5403 NC_011988.1 403631 404620 D hypothetical protein 403631..404620 Agrobacterium vitis S4 7381505 YP_002547251.1 CDS Avi_5404 NC_011988.1 404626 405399 D ABC transporter ATPase 404626..405399 Agrobacterium vitis S4 7381506 YP_002547252.1 CDS Avi_5406 NC_011988.1 405455 406210 D ABC transporter permease 405455..406210 Agrobacterium vitis S4 7381507 YP_002547253.1 CDS Avi_5408 NC_011988.1 406328 407311 D flavonol synthase/dioxygenase 406328..407311 Agrobacterium vitis S4 7381508 YP_002547254.1 CDS Avi_5409 NC_011988.1 407398 408300 D LysR family transcriptional regulator 407398..408300 Agrobacterium vitis S4 7381509 YP_002547255.1 CDS Avi_5410 NC_011988.1 408372 409754 D cytosine deaminase-like protein 408372..409754 Agrobacterium vitis S4 7381510 YP_002547256.1 CDS Avi_5411 NC_011988.1 409732 412758 R beta-galactosidase complement(409732..412758) Agrobacterium vitis S4 7381511 YP_002547257.1 CDS Avi_5412 NC_011988.1 413162 414352 D transcriptional regulator ROK family 413162..414352 Agrobacterium vitis S4 7381512 YP_002547258.1 CDS Avi_5413 NC_011988.1 414368 415171 R transporter formate/nitrite transporter family complement(414368..415171) Agrobacterium vitis S4 7381513 YP_002547259.1 CDS Avi_5414 NC_011988.1 415368 416759 R chlorohydrolase family protein complement(415368..416759) Agrobacterium vitis S4 7381514 YP_002547260.1 CDS Avi_5416 NC_011988.1 416752 417603 R vanillate O-demethylase oxygenase subunit complement(416752..417603) Agrobacterium vitis S4 7381515 YP_002547261.1 CDS Avi_5417 NC_011988.1 417627 418562 R sugar ABC transporter permease complement(417627..418562) Agrobacterium vitis S4 7381516 YP_002547262.1 CDS Avi_5418 NC_011988.1 418574 419620 R sugar ABC transporter permease complement(418574..419620) Agrobacterium vitis S4 7381517 YP_002547263.1 CDS Avi_5419 NC_011988.1 419613 421208 R ABC transporter nucleotide binding/ATPase (sugar/ribonucleotide) complement(419613..421208) Agrobacterium vitis S4 7381518 YP_002547264.1 CDS Avi_5420 NC_011988.1 421282 422394 R lipoprotein complement(421282..422394) Agrobacterium vitis S4 7381519 YP_002547265.1 CDS Avi_5422 NC_011988.1 423154 423846 D oxidoreductase 423154..423846 Agrobacterium vitis S4 7381520 YP_002547266.1 CDS Avi_5423 NC_011988.1 423846 424478 D Gst12 glutathione-S-transferase 423846..424478 Agrobacterium vitis S4 7381521 YP_002547267.1 CDS ade NC_011988.1 424533 426332 D adenine deaminase 424533..426332 Agrobacterium vitis S4 7381522 YP_002547268.1 CDS Avi_5425 NC_011988.1 426332 427282 D Transcriptional regulator 426332..427282 Agrobacterium vitis S4 7381523 YP_002547269.1 CDS Avi_5426 NC_011988.1 427376 427876 D Sulfopyruvate decarboxylase alpha subunit 427376..427876 Agrobacterium vitis S4 7381524 YP_002547270.1 CDS Avi_5427 NC_011988.1 427873 428481 D thiamine pyrophosphate-requiring enzyme 427873..428481 Agrobacterium vitis S4 7381525 YP_002547271.1 CDS Avi_5431 NC_011988.1 430113 431513 D chlorohydrolase 430113..431513 Agrobacterium vitis S4 7381527 YP_002547272.1 CDS Avi_5432 NC_011988.1 431510 432376 D phenylpropionate dioxygenase 431510..432376 Agrobacterium vitis S4 7381528 YP_002547273.1 CDS Avi_5433 NC_011988.1 432376 435522 D dehydrogenase 432376..435522 Agrobacterium vitis S4 7381529 YP_002547274.1 CDS xdhA NC_011988.1 435519 436004 D xanthine dehydrogenase 435519..436004 Agrobacterium vitis S4 7381530 YP_002547275.1 CDS dhaS NC_011988.1 436006 437520 D aldehyde dehydrogenase 436006..437520 Agrobacterium vitis S4 7381531 YP_002547276.1 CDS pcaI NC_011988.1 437682 438389 D 3-oxoadipate CoA-transferase subunit A 437682..438389 Agrobacterium vitis S4 7381532 YP_002547277.1 CDS pcaJ NC_011988.1 438389 439036 D 3-oxoadipate CoA-transferase subunit B 438389..439036 Agrobacterium vitis S4 7381533 YP_002547278.1 CDS Avi_5438 NC_011988.1 439260 440015 D GntR family transcriptional regulator 439260..440015 Agrobacterium vitis S4 7381534 YP_002547279.1 CDS lldA NC_011988.1 440012 441151 D L-lactate dehydrogenase 440012..441151 Agrobacterium vitis S4 7381535 YP_002547280.1 CDS Avi_5440 NC_011988.1 441497 442336 D hypothetical protein 441497..442336 Agrobacterium vitis S4 7381536 YP_002547281.1 CDS Avi_5441 NC_011988.1 442385 443236 D 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 442385..443236 Agrobacterium vitis S4 7381537 YP_002547282.1 CDS Avi_5443 NC_011988.1 443429 445072 D 3-(3-hydroxyphenyl)propionate hydroxylase; 3-(3-hydroxy-phenyl)propionate hydroxylase FAD/NAD(P)-binding 443429..445072 Agrobacterium vitis S4 7381538 YP_002547283.1 CDS livJ NC_011988.1 445697 446917 D ABC transporter substrate binding protein (branched amino acid) 445697..446917 Agrobacterium vitis S4 7381539 YP_002547284.1 CDS livH NC_011988.1 447089 447946 D ABC transporter permease 447089..447946 Agrobacterium vitis S4 7381540 YP_002547285.1 CDS Avi_5446 NC_011988.1 447956 448954 D branched-chain amino acid ABC transporter permease 447956..448954 Agrobacterium vitis S4 7381541 YP_002547286.1 CDS Avi_5447 NC_011988.1 448951 449694 D ABC transporter ATPase 448951..449694 Agrobacterium vitis S4 7381542 YP_002547287.1 CDS livF NC_011988.1 449691 450398 D ABC transporter nucleotide binding/ATPase (branched chain amino acid) 449691..450398 Agrobacterium vitis S4 7381543 YP_002547288.1 CDS hppD NC_011988.1 450460 452307 R 4-hydroxyphenylpyruvate dioxygenase complement(450460..452307) Agrobacterium vitis S4 7381544 YP_002547289.1 CDS Avi_5451 NC_011988.1 452505 453230 D TetR family transcriptional regulator 452505..453230 Agrobacterium vitis S4 7381545 YP_002547290.1 CDS aroQ NC_011988.1 453205 453648 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(453205..453648) Agrobacterium vitis S4 7381546 YP_002547291.1 CDS aroE NC_011988.1 453645 454514 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(453645..454514) Agrobacterium vitis S4 7381547 YP_002547292.1 CDS Avi_5456 NC_011988.1 454586 455344 R ABC transporter nucleotide binding/ATPase (amino acid) complement(454586..455344) Agrobacterium vitis S4 7381548 YP_002547293.1 CDS Avi_5457 NC_011988.1 455358 456197 R amino acid ABC transporter substrate-binding protein complement(455358..456197) Agrobacterium vitis S4 7381549 YP_002547294.1 CDS Avi_5458 NC_011988.1 456328 456978 R amino acid ABC transporter permease complement(456328..456978) Agrobacterium vitis S4 7381550 YP_002547295.1 CDS Avi_5459 NC_011988.1 456989 457657 R amino acid ABC transporter permease complement(456989..457657) Agrobacterium vitis S4 7381551 YP_002547296.1 CDS Avi_5460 NC_011988.1 458285 459175 R hypothetical protein complement(458285..459175) Agrobacterium vitis S4 7381552 YP_002547297.1 CDS treZ NC_011988.1 459765 461528 R malto-oligosyltrehalose trehalohydrolase complement(459765..461528) Agrobacterium vitis S4 7381553 YP_002547298.1 CDS treY NC_011988.1 461742 464273 D malto-oligosyltrehalose synthase 461742..464273 Agrobacterium vitis S4 7381554 YP_002547299.1 CDS Avi_5463 NC_011988.1 464389 464820 D osmotically inducible protein OsmC 464389..464820 Agrobacterium vitis S4 7381555 YP_002547300.1 CDS Avi_5465 NC_011988.1 464859 465923 D hypothetical protein 464859..465923 Agrobacterium vitis S4 7381556 YP_002547301.1 CDS Avi_5466 NC_011988.1 466285 467784 D hypothetical protein 466285..467784 Agrobacterium vitis S4 7381557 YP_002547302.1 CDS Avi_5467 NC_011988.1 467837 468664 R ABC transporter nucleotide binding/ATPase (aliphatic sulfonate) complement(467837..468664) Agrobacterium vitis S4 7381558 YP_002547303.1 CDS Avi_5468 NC_011988.1 468670 469524 R aliphatic sulfonate ABC transporter permease complement(468670..469524) Agrobacterium vitis S4 7381559 YP_002547304.1 CDS Avi_5469 NC_011988.1 469565 470533 R ABC transporter substrate binding protein (aliphatic sulfonate) complement(469565..470533) Agrobacterium vitis S4 7381560 YP_002547305.1 CDS ssuA NC_011988.1 470916 471881 D ABC transporter substrate binding protein (aliphatic sulfonate) 470916..471881 Agrobacterium vitis S4 7381561 YP_002547306.1 CDS ssuD NC_011988.1 471907 473097 D sulfonate monooxygenase 471907..473097 Agrobacterium vitis S4 7381562 YP_002547307.1 CDS Avi_5475 NC_011988.1 473367 473834 D hypothetical protein 473367..473834 Agrobacterium vitis S4 7381563 YP_002547308.1 CDS Avi_5477 NC_011988.1 473989 474537 R hypothetical protein complement(473989..474537) Agrobacterium vitis S4 7381564 YP_002547309.1 CDS Avi_5479 NC_011988.1 474902 476074 R FMNH2-dependent monooxygenase complement(474902..476074) Agrobacterium vitis S4 7381565 YP_002547310.1 CDS Avi_5481 NC_011988.1 476348 477259 R LysR family transcriptional regulator complement(476348..477259) Agrobacterium vitis S4 7381566 YP_002547311.1 CDS Avi_5482 NC_011988.1 477468 478265 D lipase esterase 477468..478265 Agrobacterium vitis S4 7381567 YP_002547312.1 CDS mexE NC_011988.1 478324 479514 D HlyD family secretion protein 478324..479514 Agrobacterium vitis S4 7381403 YP_002547313.1 CDS mexF NC_011988.1 479695 482895 D AcrB/AcrD/AcrF family protein 479695..482895 Agrobacterium vitis S4 7381404 YP_002547314.1 CDS Avi_5485 NC_011988.1 482978 483934 R LysR family transcriptional regulator complement(482978..483934) Agrobacterium vitis S4 7381405 YP_002547315.1 CDS Avi_5486 NC_011988.1 484167 485339 D hypothetical protein 484167..485339 Agrobacterium vitis S4 7381406 YP_002547316.1 CDS Avi_5487 NC_011988.1 485336 486016 D hypothetical protein 485336..486016 Agrobacterium vitis S4 7381407 YP_002547317.1 CDS Avi_5488 NC_011988.1 486049 486996 D Glyoxalase/bleomycin resistance 486049..486996 Agrobacterium vitis S4 7381408 YP_002547318.1 CDS Avi_5489 NC_011988.1 487014 487373 D ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenase 487014..487373 Agrobacterium vitis S4 7381409 YP_002547319.1 CDS Avi_5490 NC_011988.1 487377 488507 D hypothetical protein 487377..488507 Agrobacterium vitis S4 7381410 YP_002547320.1 CDS Avi_5491 NC_011988.1 488651 489769 D permease (MFS superfamily) 488651..489769 Agrobacterium vitis S4 7381411 YP_002547321.1 CDS Avi_5492 NC_011988.1 489766 490347 D transcriptional regulator protein 489766..490347 Agrobacterium vitis S4 7381412 YP_002547322.1 CDS Avi_5493 NC_011988.1 490387 491364 D 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) 490387..491364 Agrobacterium vitis S4 7381413 YP_002547323.1 CDS Avi_5494 NC_011988.1 491364 492284 D Nucleoside-diphosphate-sugar epimerase 491364..492284 Agrobacterium vitis S4 7381414 YP_002547324.1 CDS Avi_5495 NC_011988.1 492281 493057 D cyclase 492281..493057 Agrobacterium vitis S4 7381415 YP_002547325.1 CDS Avi_5496 NC_011988.1 493283 494623 R ABC transporter ATPase complement(493283..494623) Agrobacterium vitis S4 7381416 YP_002547326.1 CDS Avi_5498 NC_011988.1 494675 496345 R ABC-type anion transport system, duplicated permease component complement(494675..496345) Agrobacterium vitis S4 7381417 YP_002547327.1 CDS Avi_5501 NC_011988.1 496749 497819 D two component sensor kinase 496749..497819 Agrobacterium vitis S4 7381418 YP_002547328.1 CDS nwsB NC_011988.1 497816 498454 D two component response regulator 497816..498454 Agrobacterium vitis S4 7381419 YP_002547329.1 CDS Avi_5503 NC_011988.1 498509 499414 R hypothetical protein complement(498509..499414) Agrobacterium vitis S4 7381420 YP_002547330.1 CDS ugpC NC_011988.1 499411 500556 R part of the UgpABCE glycerol-3-phosphate uptake system; glycerol-3-phosphate transporter ATP-binding subunit complement(499411..500556) Agrobacterium vitis S4 7381421 YP_002547331.1 CDS ugpE NC_011988.1 500597 501484 R sn-glycerol-3-phosphate ABC transporter permease complement(500597..501484) Agrobacterium vitis S4 7381422 YP_002547332.1 CDS ugpA NC_011988.1 501492 502382 R sn-glycerol-3-phosphate ABC transporter permease complement(501492..502382) Agrobacterium vitis S4 7381423 YP_002547333.1 CDS ugpB NC_011988.1 502459 503802 R ABC transporter substrate binding protein (glycerol 3-phosphate) complement(502459..503802) Agrobacterium vitis S4 7381424 YP_002547334.1 CDS Avi_5508 NC_011988.1 503988 504830 R ABC transporter permease complement(503988..504830) Agrobacterium vitis S4 7381425 YP_002547335.1 CDS Avi_5510 NC_011988.1 504834 505712 R ABC transporter permease complement(504834..505712) Agrobacterium vitis S4 7381426 YP_002547336.1 CDS ugpC NC_011988.1 505709 506806 R ABC transporter nucleotide binding/ATPase (sn-Glycerol-3-phosphate) complement(505709..506806) Agrobacterium vitis S4 7381427 YP_002547337.1 CDS Avi_5512 NC_011988.1 506945 508126 R ABC transporter substrate-binding protein complement(506945..508126) Agrobacterium vitis S4 7381428 YP_002547338.1 CDS Avi_5513 NC_011988.1 508315 510060 R hypothetical protein complement(508315..510060) Agrobacterium vitis S4 7381429 YP_002547339.1 CDS Avi_5514 NC_011988.1 510077 511075 R transcriptional regulator ROK family complement(510077..511075) Agrobacterium vitis S4 7381430 YP_002547340.1 CDS Avi_5515 NC_011988.1 511602 513503 D ABC transporter substrate binding protein (oligopeptide) 511602..513503 Agrobacterium vitis S4 7381431 YP_002547341.1 CDS Avi_5516 NC_011988.1 513627 514613 D peptide ABC transporter permease 513627..514613 Agrobacterium vitis S4 7381432 YP_002547342.1 CDS Avi_5517 NC_011988.1 514623 515762 D peptide ABC transporter permease 514623..515762 Agrobacterium vitis S4 7381433 YP_002547343.1 CDS Avi_5518 NC_011988.1 515759 516805 D ABC transporter nucleotide binding/ATPase (oligopeptide) 515759..516805 Agrobacterium vitis S4 7381434 YP_002547344.1 CDS Avi_5520 NC_011988.1 516802 517833 D ABC transporter nucleotide binding/ATPase (oligopeptide) 516802..517833 Agrobacterium vitis S4 7381435 YP_002547345.1 CDS phoP NC_011988.1 517991 518647 D two component response regulator 517991..518647 Agrobacterium vitis S4 7381436 YP_002547346.1 CDS Avi_5522 NC_011988.1 518651 520033 D Signal transduction histidine kinase 518651..520033 Agrobacterium vitis S4 7381437 YP_002547347.1 CDS Avi_5523 NC_011988.1 520212 520916 D phosphoserine phosphatase 520212..520916 Agrobacterium vitis S4 7381438 YP_002547348.1 CDS Avi_5524 NC_011988.1 520930 522342 D 4 animobutyrate aminotransferase 520930..522342 Agrobacterium vitis S4 7381439 YP_002547349.1 CDS Avi_5525 NC_011988.1 522401 523300 D hypothetical protein 522401..523300 Agrobacterium vitis S4 7381440 YP_002547350.1 CDS Avi_5526 NC_011988.1 523297 523650 D Permeases of the drug/metabolite transporter (DMT) superfamily 523297..523650 Agrobacterium vitis S4 7381441 YP_002547351.1 CDS Avi_5527 NC_011988.1 523647 524528 D hypothetical protein 523647..524528 Agrobacterium vitis S4 7381442 YP_002547352.1 CDS Avi_5529 NC_011988.1 524525 525340 D carboxylesterase 524525..525340 Agrobacterium vitis S4 7381443 YP_002547353.1 CDS Avi_5530 NC_011988.1 525402 526550 D hypothetical protein 525402..526550 Agrobacterium vitis S4 7381444 YP_002547354.1 CDS Avi_5531 NC_011988.1 526547 526915 D Permeases of the drug/metabolite transporter (DMT) superfamily 526547..526915 Agrobacterium vitis S4 7381445 YP_002547355.1 CDS Avi_5533 NC_011988.1 526924 527754 R hypothetical protein complement(526924..527754) Agrobacterium vitis S4 7381446 YP_002547356.1 CDS celB NC_011988.1 527966 530242 R celB protein complement(527966..530242) Agrobacterium vitis S4 7381447 YP_002547357.1 CDS celA NC_011988.1 530317 532506 R cellulose synthase complement(530317..532506) Agrobacterium vitis S4 7381448 YP_002547358.1 CDS Avi_5536 NC_011988.1 532608 533687 R cellulose biosynthesis protein complement(532608..533687) Agrobacterium vitis S4 7381449 YP_002547359.1 CDS celG NC_011988.1 533851 536133 D cellulose synthesis protein 533851..536133 Agrobacterium vitis S4 7381450 YP_002547360.1 CDS Avi_5539 NC_011988.1 536254 538287 R signal transduction histidine kinase complement(536254..538287) Agrobacterium vitis S4 7381451 YP_002547361.1 CDS Avi_5540 NC_011988.1 538528 539763 D sensory box histidine kinase 538528..539763 Agrobacterium vitis S4 7381452 YP_002547362.1 CDS Avi_5541 NC_011988.1 539787 540191 D LovR from Caulobacter crescentus is a response regulator part of a two-component signaling system that regulates photosensitive bacterial cell-surface and cell-cell attachment; response regulator 539787..540191 Agrobacterium vitis S4 7381453 YP_002547363.1 CDS Avi_5544 NC_011988.1 540688 541728 R hypothetical protein complement(540688..541728) Agrobacterium vitis S4 7381454 YP_002547364.1 CDS cvgS NC_011988.1 541988 545098 D two component sensor kinase/response regulator hybrid 541988..545098 Agrobacterium vitis S4 7381455 YP_002547365.1 CDS galE NC_011988.1 545185 546078 D UDP-glucose 4-epimerase 545185..546078 Agrobacterium vitis S4 7381456 YP_002547366.1 CDS Avi_5548 NC_011988.1 546277 547398 R oxidoreductase complement(546277..547398) Agrobacterium vitis S4 7381457 YP_002547367.1 CDS Avi_5549 NC_011988.1 547439 548443 R NAD binding oxidoreductase complement(547439..548443) Agrobacterium vitis S4 7381458 YP_002547368.1 CDS Avi_5550 NC_011988.1 548470 549993 R glutamine ABC transporter complement(548470..549993) Agrobacterium vitis S4 7381459 YP_002547369.1 CDS glnH NC_011988.1 550073 550825 R ABC transporter substrate binding protein (glutamine) complement(550073..550825) Agrobacterium vitis S4 7381460 YP_002547370.1 CDS Avi_5553 NC_011988.1 551142 552212 D transcriptional regulator LacI family 551142..552212 Agrobacterium vitis S4 7381461 YP_002547371.1 CDS mcpA NC_011988.1 552490 554451 D methyl-accepting chemotaxis protein 552490..554451 Agrobacterium vitis S4 7381462 YP_002547372.1 CDS cheW NC_011988.1 554451 554924 D chemotaxis protein 554451..554924 Agrobacterium vitis S4 7381463 YP_002547373.1 CDS Avi_5556 NC_011988.1 555203 556585 D HlyD family secretion protein 555203..556585 Agrobacterium vitis S4 7381464 YP_002547374.1 CDS Avi_5557 NC_011988.1 556582 559680 D AcrB/AcrD/AcrF family protein 556582..559680 Agrobacterium vitis S4 7381465 YP_002547375.1 CDS Avi_5558 NC_011988.1 559677 562784 D AcrB/AcrD/AcrF family protein 559677..562784 Agrobacterium vitis S4 7381466 YP_002547376.1 CDS Avi_5559 NC_011988.1 562925 563683 D GntR family transcriptional regulator 562925..563683 Agrobacterium vitis S4 7381467 YP_002547377.1 CDS gcvT NC_011988.1 563807 565225 D glycine cleavage system T protein aminomethyltransferase 563807..565225 Agrobacterium vitis S4 7381468 YP_002547378.1 CDS Avi_5561 NC_011988.1 565487 567760 R P type cation (metal) transporter ATPase component complement(565487..567760) Agrobacterium vitis S4 7381469 YP_002547379.1 CDS Avi_5562 NC_011988.1 567832 568251 D transcriptional regulator 567832..568251 Agrobacterium vitis S4 7381470 YP_002547380.1 CDS glgB NC_011988.1 568359 570566 R catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme complement(568359..570566) Agrobacterium vitis S4 7381471 YP_002547381.1 CDS aglA NC_011988.1 570563 573865 R alpha-glucosidase complement(570563..573865) Agrobacterium vitis S4 7381472 YP_002547382.1 CDS Avi_5565 NC_011988.1 573877 577125 R alpha-amylase-related protein complement(573877..577125) Agrobacterium vitis S4 7381473 YP_002547383.1 CDS Avi_5566 NC_011988.1 577396 579210 D 4-alpha-glucanotransferase 577396..579210 Agrobacterium vitis S4 7381474 YP_002547384.1 CDS cspA NC_011988.1 579676 579888 D cold shock protein 579676..579888 Agrobacterium vitis S4 7381475 YP_002547385.1 CDS Avi_5568 NC_011988.1 580017 581042 R hypothetical protein complement(580017..581042) Agrobacterium vitis S4 7381476 YP_002547386.1 CDS Avi_5569 NC_011988.1 581026 582072 R hypothetical protein complement(581026..582072) Agrobacterium vitis S4 7381477 YP_002547387.1 CDS thuB NC_011988.1 582202 583302 R trehalose utilization-related protein complement(582202..583302) Agrobacterium vitis S4 7381478 YP_002547388.1 CDS thuA NC_011988.1 583299 584084 R trehalose utilization-related protein complement(583299..584084) Agrobacterium vitis S4 7381479 YP_002547389.1 CDS Avi_5575 NC_011988.1 584380 585093 D GntR family transcriptional regulator 584380..585093 Agrobacterium vitis S4 7381480 YP_002547390.1 CDS dapA NC_011988.1 585237 586178 D dihydrodipicolinate synthase 585237..586178 Agrobacterium vitis S4 7381481 YP_002547391.1 CDS Avi_5578 NC_011988.1 586203 589271 R alpha-mannosidase complement(586203..589271) Agrobacterium vitis S4 7381482 YP_002547392.1 CDS Avi_5579 NC_011988.1 589337 590602 R hypothetical protein complement(589337..590602) Agrobacterium vitis S4 7381483 YP_002547393.1 CDS togB NC_011988.1 591125 592408 D ABC transporter/Periplasmic pectin oligomer binding protein 591125..592408 Agrobacterium vitis S4 7381484 YP_002547394.1 CDS togM NC_011988.1 592434 593378 D galacturonic acid ABC transporter permease 592434..593378 Agrobacterium vitis S4 7381063 YP_002547395.1 CDS togN NC_011988.1 593371 594252 D galacturonic acid ABC transporter permease 593371..594252 Agrobacterium vitis S4 7381064 YP_002547396.1 CDS Avi_5583 NC_011988.1 594281 595309 D oxidoreductase 594281..595309 Agrobacterium vitis S4 7381065 YP_002547397.1 CDS Avi_5584 NC_011988.1 595302 596372 D oxidoreductase 595302..596372 Agrobacterium vitis S4 7381066 YP_002547398.1 CDS togA NC_011988.1 596372 597466 D galacturonide ABC transporter ATPase/permease 596372..597466 Agrobacterium vitis S4 7381067 YP_002547399.1 CDS Avi_5586 NC_011988.1 597555 598229 D hypothetical protein 597555..598229 Agrobacterium vitis S4 7381068 YP_002547400.1 CDS Avi_5587 NC_011988.1 598779 598925 R hypothetical protein complement(598779..598925) Agrobacterium vitis S4 7381069 YP_002547401.1 CDS Avi_5588 NC_011988.1 599271 600128 D dehydrogenase 599271..600128 Agrobacterium vitis S4 7381070 YP_002547402.1 CDS Avi_5589 NC_011988.1 600415 602313 D sensor histidine kinase 600415..602313 Agrobacterium vitis S4 7381071 YP_002547403.1 CDS Avi_5592 NC_011988.1 602627 604069 D hypothetical protein 602627..604069 Agrobacterium vitis S4 7381072 YP_002547404.1 CDS exsG NC_011988.1 604066 605124 D two component sensor kinase 604066..605124 Agrobacterium vitis S4 7381073 YP_002547405.1 CDS Avi_5594 NC_011988.1 605184 605900 R hypothetical protein complement(605184..605900) Agrobacterium vitis S4 7381074 YP_002547406.1 CDS Avi_5595 NC_011988.1 606008 607051 R zinc-binding oxidoreductase complement(606008..607051) Agrobacterium vitis S4 7381075 YP_002547407.1 CDS Avi_5596 NC_011988.1 607468 607968 D hypothetical protein 607468..607968 Agrobacterium vitis S4 7381076 YP_002547408.1 CDS ecfR NC_011988.1 608151 608675 D ECF family sigma factor 608151..608675 Agrobacterium vitis S4 7381077 YP_002547409.1 CDS Avi_5598 NC_011988.1 608877 609617 D Transcriptional regulator 608877..609617 Agrobacterium vitis S4 7381078 YP_002547410.1 CDS Avi_5599 NC_011988.1 610125 611354 D MFS permease 610125..611354 Agrobacterium vitis S4 7381079 YP_002547411.1 CDS Avi_5600 NC_011988.1 611477 612628 D hypothetical protein 611477..612628 Agrobacterium vitis S4 7381080 YP_002547412.1 CDS Avi_5601 NC_011988.1 613415 613921 D hypothetical protein 613415..613921 Agrobacterium vitis S4 7381081 YP_002547413.1 CDS Avi_5602 NC_011988.1 613931 615901 D GGDEF family protein 613931..615901 Agrobacterium vitis S4 7381082 YP_002547414.1 CDS Avi_5603 NC_011988.1 616068 616898 D metal dependent beta lactamase 616068..616898 Agrobacterium vitis S4 7381083 YP_002547415.1 CDS cyaA NC_011988.1 617045 618760 D adenylate cyclase 617045..618760 Agrobacterium vitis S4 7381084 YP_002547416.1 CDS cyaA NC_011988.1 618953 620305 D adenylate cyclase 618953..620305 Agrobacterium vitis S4 7381085 YP_002547417.1 CDS Avi_5606 NC_011988.1 620486 623200 D ABC transporter ATPase 620486..623200 Agrobacterium vitis S4 7381086 YP_002547418.1 CDS Avi_5607 NC_011988.1 623236 623700 D cAMP-dependent protein kinase regulatory subunit 623236..623700 Agrobacterium vitis S4 7381087 YP_002547419.1 CDS suhB NC_011988.1 623859 624698 D extragenic suppressor protein SuhB 623859..624698 Agrobacterium vitis S4 7381088 YP_002547420.1 CDS Avi_5609 NC_011988.1 624677 625546 R hypothetical protein complement(624677..625546) Agrobacterium vitis S4 7381089 YP_002547421.1 CDS Avi_5610 NC_011988.1 625533 626615 R ABC transporter ATPase complement(625533..626615) Agrobacterium vitis S4 7381090 YP_002547422.1 CDS Avi_5611 NC_011988.1 626659 627468 R sugar ABC transporter permease complement(626659..627468) Agrobacterium vitis S4 7381091 YP_002547423.1 CDS Avi_5612 NC_011988.1 627479 628369 R spermidine/putrescine ABC transporter permease complement(627479..628369) Agrobacterium vitis S4 7381092 YP_002547424.1 CDS Avi_5613 NC_011988.1 628369 629556 R ABC transporter substrate-binding protein complement(628369..629556) Agrobacterium vitis S4 7381093 YP_002547425.1 CDS Avi_5614 NC_011988.1 629788 630345 D hypothetical protein 629788..630345 Agrobacterium vitis S4 7381094 YP_002547426.1 CDS uxuA NC_011988.1 630359 631372 R mannonate dehydratase complement(630359..631372) Agrobacterium vitis S4 7381095 YP_002547427.1 CDS Avi_5617 NC_011988.1 632154 633452 D flavin-containing amine oxidase 632154..633452 Agrobacterium vitis S4 7381096 YP_002547428.1 CDS Avi_5618 NC_011988.1 633816 634274 D hypothetical protein 633816..634274 Agrobacterium vitis S4 7381097 YP_002547429.1 CDS Avi_5619 NC_011988.1 634324 634605 D polyketide synthase 634324..634605 Agrobacterium vitis S4 7381098 YP_002547430.1 CDS Avi_5621 NC_011988.1 634711 635541 D siimilar to amino acid adenylation protein of Anabaena variabilis; Amino acid adenylation protein 634711..635541 Agrobacterium vitis S4 7381099 YP_002547431.1 CDS Avi_5624 NC_011988.1 635579 642925 D polyketide synthase 635579..642925 Agrobacterium vitis S4 7381100 YP_002547432.1 CDS Avi_5625 NC_011988.1 642922 650028 D polyketide synthase 642922..650028 Agrobacterium vitis S4 7381101 YP_002547433.1 CDS Avi_5626 NC_011988.1 650044 651624 D hypothetical protein 650044..651624 Agrobacterium vitis S4 7381102 YP_002547434.1 CDS Avi_5627 NC_011988.1 651663 653309 D similar to Burkholderia pseudomallei YP_111280; Acyl-CoA dehydrogenase 651663..653309 Agrobacterium vitis S4 7381103 YP_002547435.1 CDS Avi_5628 NC_011988.1 653387 655198 D Acyl-CoA dehydrogenase 653387..655198 Agrobacterium vitis S4 7381104 YP_002547436.1 CDS Avi_5629 NC_011988.1 655247 656191 R formamidase complement(655247..656191) Agrobacterium vitis S4 7381105 YP_002547437.1 CDS Avi_5630 NC_011988.1 656209 657195 R ABC transporter nucleotide binding/ATPase (oligopeptide) complement(656209..657195) Agrobacterium vitis S4 7381106 YP_002547438.1 CDS Avi_5631 NC_011988.1 657192 658217 R ABC transporter nucleotide binding/ATPase (oligopeptide) complement(657192..658217) Agrobacterium vitis S4 7381107 YP_002547439.1 CDS Avi_5632 NC_011988.1 658220 659191 R peptide ABC transporter permease complement(658220..659191) Agrobacterium vitis S4 7381108 YP_002547440.1 CDS dppC NC_011988.1 659203 660255 R peptide ABC transporter permease complement(659203..660255) Agrobacterium vitis S4 7381109 YP_002547441.1 CDS Avi_5634 NC_011988.1 660333 662039 R hypothetical protein complement(660333..662039) Agrobacterium vitis S4 7381110 YP_002547442.1 CDS Avi_5637 NC_011988.1 662095 662988 R hydrolases or acyltransferases (alpha/beta hydrolase superfamily) complement(662095..662988) Agrobacterium vitis S4 7381111 YP_002547443.1 CDS Avi_5638 NC_011988.1 663020 663625 R Response regulator antiterminator domain-containing protein complement(663020..663625) Agrobacterium vitis S4 7381112 YP_002547444.1 CDS Avi_5639 NC_011988.1 663622 664854 R ABC transporter substrate-binding protein complement(663622..664854) Agrobacterium vitis S4 7381113 YP_002547445.1 CDS Avi_5640 NC_011988.1 665201 666103 D LysR family transcriptional regulator 665201..666103 Agrobacterium vitis S4 7381114 YP_002547446.1 CDS Avi_5641 NC_011988.1 666247 667773 D ABC transporter substrate binding protein (oligopeptide) 666247..667773 Agrobacterium vitis S4 7381115 YP_002547447.1 CDS Avi_5642 NC_011988.1 667892 668842 D peptide ABC transporter permease 667892..668842 Agrobacterium vitis S4 7381116 YP_002547448.1 CDS Avi_5643 NC_011988.1 668839 669705 D ABC transporter 668839..669705 Agrobacterium vitis S4 7381117 YP_002547449.1 CDS Avi_5644 NC_011988.1 669702 670697 D ABC transporter nucleotide binding/ATPase (oligopeptide) 669702..670697 Agrobacterium vitis S4 7381118 YP_002547450.1 CDS Avi_5646 NC_011988.1 670697 671689 D ABC transporter nucleotide binding/ATPase (oligopeptide) 670697..671689 Agrobacterium vitis S4 7381119 YP_002547451.1 CDS gatA NC_011988.1 671716 673110 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 671716..673110 Agrobacterium vitis S4 7381120 YP_002547452.1 CDS Avi_5649 NC_011988.1 673127 674920 R catalyzes the hydrolysis of allophanate; allophanate hydrolase complement(673127..674920) Agrobacterium vitis S4 7381121 YP_002547453.1 CDS Avi_5650 NC_011988.1 674924 675268 R Allophanate hydrolase complement(674924..675268) Agrobacterium vitis S4 7381122 YP_002547454.1 CDS Avi_5651 NC_011988.1 675261 675932 R hypothetical protein complement(675261..675932) Agrobacterium vitis S4 7381123 YP_002547455.1 CDS Avi_5652 NC_011988.1 675929 677455 R ABC transporter nucleotide binding/ATPase (sugar/ribonucleotide) complement(675929..677455) Agrobacterium vitis S4 7381124 YP_002547456.1 CDS Avi_5653 NC_011988.1 677452 678513 R cyanuric acid amidohydrolase complement(677452..678513) Agrobacterium vitis S4 7381125 YP_002547457.1 CDS Avi_5654 NC_011988.1 678510 679211 R hypothetical protein complement(678510..679211) Agrobacterium vitis S4 7381126 YP_002547458.1 CDS amiF NC_011988.1 679220 680236 R formamide amidohydrolase; catalyzes the hydrolysis of formamide to formate; formamidase complement(679220..680236) Agrobacterium vitis S4 7381127 YP_002547459.1 CDS Avi_5656 NC_011988.1 680253 681179 R sugar ABC transporter permease complement(680253..681179) Agrobacterium vitis S4 7381128 YP_002547460.1 CDS Avi_5657 NC_011988.1 681179 682357 R sugar ABC transporter permease complement(681179..682357) Agrobacterium vitis S4 7381129 YP_002547461.1 CDS Avi_5659 NC_011988.1 682362 683630 R lipoprotein complement(682362..683630) Agrobacterium vitis S4 7381130 YP_002547462.1 CDS Avi_5660 NC_011988.1 683830 684513 D GntR family transcriptional regulator 683830..684513 Agrobacterium vitis S4 7381131 YP_002547463.1 CDS Avi_5661 NC_011988.1 684532 686193 R ABC transporter ATPase complement(684532..686193) Agrobacterium vitis S4 7381132 YP_002547464.1 CDS Avi_5662 NC_011988.1 686190 687065 R ABC transporter permease complement(686190..687065) Agrobacterium vitis S4 7381133 YP_002547465.1 CDS Avi_5663 NC_011988.1 687062 688018 R ABC transporter permease complement(687062..688018) Agrobacterium vitis S4 7381134 YP_002547466.1 CDS Avi_5666 NC_011988.1 688199 689812 R ABC transporter substrate binding protein (oligopeptide) complement(688199..689812) Agrobacterium vitis S4 7381135 YP_002547467.1 CDS hadL NC_011988.1 689895 690614 R 2-haloalkanoic acid dehalogenase complement(689895..690614) Agrobacterium vitis S4 7381136 YP_002547468.1 CDS bioA NC_011988.1 690860 692233 R hypothetical protein complement(690860..692233) Agrobacterium vitis S4 7381137 YP_002547469.1 CDS Avi_5669 NC_011988.1 692252 693097 R hypothetical protein complement(692252..693097) Agrobacterium vitis S4 7381138 YP_002547470.1 CDS dehII NC_011988.1 693473 694141 D haloacid dehalogenase type II 693473..694141 Agrobacterium vitis S4 7381139 YP_002547471.1 CDS ordL NC_011988.1 694145 695419 D oxidoreductase 694145..695419 Agrobacterium vitis S4 7381140 YP_002547472.1 CDS Avi_5672 NC_011988.1 695605 695808 D hypothetical protein 695605..695808 Agrobacterium vitis S4 7381141 YP_002547473.1 CDS Avi_5673 NC_011988.1 695899 697329 R aldehyde dehydrogenase complement(695899..697329) Agrobacterium vitis S4 7381142 YP_002547474.1 CDS Avi_5674 NC_011988.1 697387 697743 R hypothetical protein complement(697387..697743) Agrobacterium vitis S4 7381143 YP_002547475.1 CDS argE NC_011988.1 697759 698889 R catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase complement(697759..698889) Agrobacterium vitis S4 7381144 YP_002547476.1 CDS Avi_5677 NC_011988.1 699084 699689 R regulatory protein complement(699084..699689) Agrobacterium vitis S4 7381145 YP_002547477.1 CDS Avi_5678 NC_011988.1 699866 701026 D RND multidrug efflux membrane permease 699866..701026 Agrobacterium vitis S4 7381568 YP_002547478.1 CDS Avi_5679 NC_011988.1 701030 704185 D AcrB/AcrD/AcrF family protein 701030..704185 Agrobacterium vitis S4 7381569 YP_002547479.1 CDS Avi_5680 NC_011988.1 704439 705971 D propionyl-CoA carboxylase 704439..705971 Agrobacterium vitis S4 7381570 YP_002547480.1 CDS Avi_5681 NC_011988.1 706051 706428 D hypothetical protein 706051..706428 Agrobacterium vitis S4 7381571 YP_002547481.1 CDS Avi_5682 NC_011988.1 706486 706842 D hypothetical protein 706486..706842 Agrobacterium vitis S4 7381572 YP_002547482.1 CDS accC NC_011988.1 706845 708845 D acetyl-CoA carboxylase biotin carboxylase 706845..708845 Agrobacterium vitis S4 7381573 YP_002547483.1 CDS Avi_5684 NC_011988.1 708887 709237 R KluB complement(708887..709237) Agrobacterium vitis S4 7381574 YP_002547484.1 CDS Avi_5686 NC_011988.1 709239 709508 R hypothetical protein complement(709239..709508) Agrobacterium vitis S4 7381575 YP_002547485.1 CDS mutA NC_011988.1 709627 711765 D MDM; functions in conversion of succinate to propionate; methylmalonyl-CoA mutase 709627..711765 Agrobacterium vitis S4 7381576 YP_002547486.1 CDS Avi_5688 NC_011988.1 711870 712334 D transcriptional regulator 711870..712334 Agrobacterium vitis S4 7381577 YP_002547487.1 CDS Avi_5689 NC_011988.1 712340 714415 D hypothetical protein 712340..714415 Agrobacterium vitis S4 7381578 YP_002547488.1 CDS Avi_5690 NC_011988.1 714627 715508 D HlyD family secretion protein 714627..715508 Agrobacterium vitis S4 7381579 YP_002547489.1 CDS Avi_5691 NC_011988.1 715681 716523 R fumarylacetoacetate (FAA) hydrolase family protein complement(715681..716523) Agrobacterium vitis S4 7381580 YP_002547490.1 CDS Avi_5692 NC_011988.1 716568 717302 R oxidoreductase complement(716568..717302) Agrobacterium vitis S4 7381581 YP_002547491.1 CDS Avi_5693 NC_011988.1 717517 718653 R Non-ribosomal peptide synthetase domain-containing protein complement(717517..718653) Agrobacterium vitis S4 7381582 YP_002547492.1 CDS Avi_5694 NC_011988.1 718853 719620 R hypothetical protein complement(718853..719620) Agrobacterium vitis S4 7381583 YP_002547493.1 CDS Avi_5696 NC_011988.1 719755 720504 R calcium-binding protein complement(719755..720504) Agrobacterium vitis S4 7381584 YP_002547494.1 CDS Avi_5697 NC_011988.1 720612 722318 R ABC transporter nucleotide binding/ATPase (oligopeptide) complement(720612..722318) Agrobacterium vitis S4 7381585 YP_002547495.1 CDS Avi_5698 NC_011988.1 722328 723491 R peptide ABC transporter permease complement(722328..723491) Agrobacterium vitis S4 7381586 YP_002547496.1 CDS Avi_5699 NC_011988.1 723488 724471 R peptide ABC transporter permease complement(723488..724471) Agrobacterium vitis S4 7381587 YP_002547497.1 CDS Avi_5700 NC_011988.1 724690 726606 R ABC transporter substrate binding protein (oligopeptide) complement(724690..726606) Agrobacterium vitis S4 7381588 YP_002547498.1 CDS Avi_5701 NC_011988.1 726718 727623 R catalyzes the formation of 2,5-dioxopentanoate from 5-dehydro-4-deoxy-D-glucarate; 5-dehydro-4-deoxyglucarate dehydratase complement(726718..727623) Agrobacterium vitis S4 7381589 YP_002547499.1 CDS Avi_5703 NC_011988.1 727834 728574 D GntR family transcriptional regulator 727834..728574 Agrobacterium vitis S4 7381590 YP_002547500.1 CDS dapE NC_011988.1 728657 730036 D hypothetical protein 728657..730036 Agrobacterium vitis S4 7381591 YP_002547501.1 CDS celI NC_011988.1 730153 731040 D hypothetical protein 730153..731040 Agrobacterium vitis S4 7381592 YP_002547502.1 CDS Avi_5707 NC_011988.1 731250 732773 D alpha-L-arabinofuranosidase 731250..732773 Agrobacterium vitis S4 7381593 YP_002547503.1 CDS Avi_5708 NC_011988.1 732821 733921 D ABC transporter nucleotide binding/ATPase (sugar) 732821..733921 Agrobacterium vitis S4 7381594 YP_002547504.1 CDS Avi_5709 NC_011988.1 733914 734864 D sugar ABC transporter permease 733914..734864 Agrobacterium vitis S4 7381595 YP_002547505.1 CDS Avi_5710 NC_011988.1 734861 735703 D sugar ABC transporter permease 734861..735703 Agrobacterium vitis S4 7381596 YP_002547506.1 CDS Avi_5711 NC_011988.1 735746 737092 D sugar uptake ABC transporter periplasmic solute-binding protein precursor 735746..737092 Agrobacterium vitis S4 7381597 YP_002547507.1 CDS Avi_5713 NC_011988.1 737142 737618 R RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; riboflavin synthase subunit beta complement(737142..737618) Agrobacterium vitis S4 7381598 YP_002547508.1 CDS Avi_5715 NC_011988.1 737732 737953 D hypothetical protein 737732..737953 Agrobacterium vitis S4 7381599 YP_002547509.1 CDS Avi_5716 NC_011988.1 738115 739014 R LysR family transcriptional regulator complement(738115..739014) Agrobacterium vitis S4 7381600 YP_002547510.1 CDS ordL NC_011988.1 739229 740512 D oxidoreductase 739229..740512 Agrobacterium vitis S4 7381601 YP_002547511.1 CDS Avi_5719 NC_011988.1 740572 742107 D aldehyde dehydrogenase 740572..742107 Agrobacterium vitis S4 7381602 YP_002547512.1 CDS Avi_5720 NC_011988.1 742158 743030 R oxidoredutase complement(742158..743030) Agrobacterium vitis S4 7381603 YP_002547513.1 CDS Avi_5722 NC_011988.1 743027 743446 R hypothetical protein complement(743027..743446) Agrobacterium vitis S4 7381604 YP_002547514.1 CDS Avi_5723 NC_011988.1 743611 744501 D gluconolactonase precursor 743611..744501 Agrobacterium vitis S4 7381605 YP_002547515.1 CDS Avi_5724 NC_011988.1 744522 745799 R related to UDP-glucuronosyltransferase; Glycosyl transferase complement(744522..745799) Agrobacterium vitis S4 7381606 YP_002547516.1 CDS Avi_5725 NC_011988.1 746023 746946 R DNA-binding HTH domain-containing protein complement(746023..746946) Agrobacterium vitis S4 7381607 YP_002547517.1 CDS lysA NC_011988.1 747479 748729 R catalyzes the decarboxylation of diaminopimelate into lysine; pyridoxal phosphate(PLP)-binding; diaminopimelate decarboxylase complement(747479..748729) Agrobacterium vitis S4 7381608 YP_002547518.1 CDS mdeA NC_011988.1 748920 750107 R hypothetical protein complement(748920..750107) Agrobacterium vitis S4 7381609 YP_002547519.1 CDS Avi_5728 NC_011988.1 750104 751516 R hypothetical protein complement(750104..751516) Agrobacterium vitis S4 7381610 YP_002547520.1 CDS Avi_5729 NC_011988.1 751516 752565 R acetylase complement(751516..752565) Agrobacterium vitis S4 7381611 YP_002547521.1 CDS Avi_5730 NC_011988.1 753003 756986 D peptide synthetase 753003..756986 Agrobacterium vitis S4 7381612 YP_002547522.1 CDS Avi_5731 NC_011988.1 757042 758358 D L-ornithine N5-oxygenase 757042..758358 Agrobacterium vitis S4 7381613 YP_002547523.1 CDS pfrI NC_011988.1 758734 759357 D sigma factor 758734..759357 Agrobacterium vitis S4 7381614 YP_002547524.1 CDS Avi_5733 NC_011988.1 759503 759976 D acetylase 759503..759976 Agrobacterium vitis S4 7381615 YP_002547525.1 CDS Avi_5734 NC_011988.1 760027 760812 R iron reductase complement(760027..760812) Agrobacterium vitis S4 7381616 YP_002547526.1 CDS Avi_5735 NC_011988.1 760929 761864 R AraC family transcriptional regulator complement(760929..761864) Agrobacterium vitis S4 7381617 YP_002547527.1 CDS Avi_5736 NC_011988.1 762130 763362 D ABC transporter substrate-binding protein 762130..763362 Agrobacterium vitis S4 7381618 YP_002547528.1 CDS Avi_5738 NC_011988.1 763476 764384 D sugar ABC transporter permease 763476..764384 Agrobacterium vitis S4 7381619 YP_002547529.1 CDS Avi_5739 NC_011988.1 764381 765235 D ABC transporter permease 764381..765235 Agrobacterium vitis S4 7381620 YP_002547530.1 CDS Avi_5740 NC_011988.1 765232 767337 D Alpha-galactosidase 765232..767337 Agrobacterium vitis S4 7381621 YP_002547531.1 CDS Avi_5741 NC_011988.1 767330 768427 D ABC transporter ATPase 767330..768427 Agrobacterium vitis S4 7381622 YP_002547532.1 CDS Avi_5742 NC_011988.1 768427 770355 D beta-galactosidase 768427..770355 Agrobacterium vitis S4 7381623 YP_002547533.1 CDS Avi_5743 NC_011988.1 770519 771049 R hypothetical protein complement(770519..771049) Agrobacterium vitis S4 7381624 YP_002547534.1 CDS soxA NC_011988.1 771042 774005 R sarcosine oxidase alpha subunit complement(771042..774005) Agrobacterium vitis S4 7381625 YP_002547535.1 CDS soxD NC_011988.1 774002 774274 R sarcosine oxidase delta subunit complement(774002..774274) Agrobacterium vitis S4 7381626 YP_002547536.1 CDS soxB NC_011988.1 774286 775536 R sarcosine oxidase beta subunit complement(774286..775536) Agrobacterium vitis S4 7381627 YP_002547537.1 CDS glxA NC_011988.1 775665 776618 D AraC family transcriptional regulator 775665..776618 Agrobacterium vitis S4 7381628 YP_002547538.1 CDS Avi_5748 NC_011988.1 776659 777318 D transcriptional regulator 776659..777318 Agrobacterium vitis S4 7381629 YP_002547539.1 CDS purF NC_011988.1 777408 778313 D amidophosphoribosyltransferase 777408..778313 Agrobacterium vitis S4 7381630 YP_002547540.1 CDS fwdC NC_011988.1 778324 779010 D formyl-methanofuran dehydrogenase 778324..779010 Agrobacterium vitis S4 7381631 YP_002547541.1 CDS gltB NC_011988.1 779095 780423 D glutamate synthase large subunit 779095..780423 Agrobacterium vitis S4 7381632 YP_002547542.1 CDS glnA NC_011988.1 780505 781812 D glutamine synthetase 780505..781812 Agrobacterium vitis S4 7381633 YP_002547543.1 CDS tphA NC_011988.1 781855 783201 R MFS permease complement(781855..783201) Agrobacterium vitis S4 7381634 YP_002547544.1 CDS lldA NC_011988.1 783302 784462 R L-lactate dehydrogenase complement(783302..784462) Agrobacterium vitis S4 7381635 YP_002547545.1 CDS Avi_5755 NC_011988.1 784606 785883 R ABC transporter substrate binding protein (sugar) complement(784606..785883) Agrobacterium vitis S4 7381636 YP_002547546.1 CDS Avi_5757 NC_011988.1 786074 788590 D hypothetical protein 786074..788590 Agrobacterium vitis S4 7381637 YP_002547547.1 CDS Avi_5758 NC_011988.1 788603 789697 D hypothetical protein 788603..789697 Agrobacterium vitis S4 7381638 YP_002547548.1 CDS Avi_5759 NC_011988.1 789772 791022 D polygalacturonase 789772..791022 Agrobacterium vitis S4 7381639 YP_002547549.1 CDS Avi_5760 NC_011988.1 791046 792164 D ABC transporter nucleotide binding/ATPase (sugar) 791046..792164 Agrobacterium vitis S4 7381640 YP_002547550.1 CDS Avi_5762 NC_011988.1 792206 793150 D sugar ABC transporter permease 792206..793150 Agrobacterium vitis S4 7381641 YP_002547551.1 CDS Avi_5763 NC_011988.1 793152 794204 D sugar ABC transporter permease 793152..794204 Agrobacterium vitis S4 7381642 YP_002547552.1 CDS purR NC_011988.1 794219 795232 R transcriptional regulator LacI family complement(794219..795232) Agrobacterium vitis S4 7381643 YP_002547553.1 CDS Avi_5766 NC_011988.1 795318 796454 R Patatin-like phospholipase domain-containing protein complement(795318..796454) Agrobacterium vitis S4 7381644 YP_002547554.1 CDS adhP NC_011988.1 796612 797640 R alcohol dehydrogenase complement(796612..797640) Agrobacterium vitis S4 7381645 YP_002547555.1 CDS dlhH NC_011988.1 797782 798669 R carboxymethylenebutenolidase complement(797782..798669) Agrobacterium vitis S4 7381646 YP_002547556.1 CDS guaB NC_011988.1 798786 800384 R inosine-5`-monophosphate dehydrogenase complement(798786..800384) Agrobacterium vitis S4 7381647 YP_002547557.1 CDS oxyR NC_011988.1 800441 801364 R LysR family transcriptional regulator complement(800441..801364) Agrobacterium vitis S4 7381648 YP_002547558.1 CDS Avi_5773 NC_011988.1 801869 802495 D TetR family transcriptional regulator 801869..802495 Agrobacterium vitis S4 7381649 YP_002547559.1 CDS Avi_5774 NC_011988.1 802548 803546 R LysR family transcriptional regulator complement(802548..803546) Agrobacterium vitis S4 7380732 YP_002547560.1 CDS Avi_5775 NC_011988.1 803728 804027 D hypothetical protein 803728..804027 Agrobacterium vitis S4 7380573 YP_002547561.1 CDS Avi_5777 NC_011988.1 804163 805062 R hypothetical protein complement(804163..805062) Agrobacterium vitis S4 7380574 YP_002547562.1 CDS Avi_5779 NC_011988.1 805335 806708 R glutamate--cysteine ligase complement(805335..806708) Agrobacterium vitis S4 7380575 YP_002547563.1 CDS Avi_5780 NC_011988.1 806887 807624 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(806887..807624) Agrobacterium vitis S4 7380576 YP_002547564.1 CDS pit NC_011988.1 807644 809146 R phosphate permease complement(807644..809146) Agrobacterium vitis S4 7380577 YP_002547565.1 CDS Avi_5783 NC_011988.1 809494 809982 R NTP pyrophosphohydrolase MutT family complement(809494..809982) Agrobacterium vitis S4 7380578 YP_002547566.1 CDS Avi_5784 NC_011988.1 810440 811846 D hypothetical protein 810440..811846 Agrobacterium vitis S4 7380579 YP_002547567.1 CDS glcD NC_011988.1 811997 813430 D glycolate oxidase subunit GlcD 811997..813430 Agrobacterium vitis S4 7380580 YP_002547568.1 CDS glcE NC_011988.1 813427 814644 D glycolate oxidase subunit 813427..814644 Agrobacterium vitis S4 7380581 YP_002547569.1 CDS glcF NC_011988.1 814683 815978 D glycolate oxidase iron-sulfur subunit 814683..815978 Agrobacterium vitis S4 7380582 YP_002547570.1 CDS Avi_5790 NC_011988.1 816118 816528 D hypothetical protein 816118..816528 Agrobacterium vitis S4 7380583 YP_002547571.1 CDS Avi_5791 NC_011988.1 816555 817265 R glutathione S-transferase complement(816555..817265) Agrobacterium vitis S4 7380584 YP_002547572.1 CDS Avi_5793 NC_011988.1 817432 817878 D hypothetical protein 817432..817878 Agrobacterium vitis S4 7380585 YP_002547573.1 CDS hisG NC_011988.1 818723 819415 R short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit complement(818723..819415) Agrobacterium vitis S4 7380586 YP_002547574.1 CDS hisZ NC_011988.1 819415 820533 R May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine; ATP phosphoribosyltransferase regulatory subunit complement(819415..820533) Agrobacterium vitis S4 7380587 YP_002547575.1 CDS Avi_5796 NC_011988.1 820860 821210 R hypothetical protein complement(820860..821210) Agrobacterium vitis S4 7380588 YP_002547576.1 CDS Avi_5797 NC_011988.1 821548 821988 R hypothetical protein complement(821548..821988) Agrobacterium vitis S4 7380589 YP_002547577.1 CDS Avi_5800 NC_011988.1 823119 823568 D hypothetical protein 823119..823568 Agrobacterium vitis S4 7380590 YP_002547578.1 CDS hisS NC_011988.1 823968 825620 R catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase complement(823968..825620) Agrobacterium vitis S4 7380591 YP_002547579.1 CDS Avi_5802 NC_011988.1 825733 826497 D hypothetical protein 825733..826497 Agrobacterium vitis S4 7380592 YP_002547580.1 CDS Avi_5803 NC_011988.1 826535 827644 D hypothetical protein 826535..827644 Agrobacterium vitis S4 7380593 YP_002547581.1 CDS Avi_5806 NC_011988.1 828146 828514 D hypothetical protein 828146..828514 Agrobacterium vitis S4 7380594 YP_002547582.1 CDS Avi_5807 NC_011988.1 828585 829286 D hypothetical protein 828585..829286 Agrobacterium vitis S4 7380595 YP_002547583.1 CDS tag NC_011988.1 829275 829922 R 3-methyladenine-DNA glycosylase complement(829275..829922) Agrobacterium vitis S4 7380596 YP_002547584.1 CDS Avi_5810 NC_011988.1 830117 830917 D hypothetical protein 830117..830917 Agrobacterium vitis S4 7380597 YP_002547585.1 CDS Avi_5811 NC_011988.1 831072 831743 D hypothetical protein 831072..831743 Agrobacterium vitis S4 7380598 YP_002547586.1 CDS Avi_5812 NC_011988.1 831960 834644 R transcriptional regulator LuxR family complement(831960..834644) Agrobacterium vitis S4 7380599 YP_002547587.1 CDS Avi_5813 NC_011988.1 834786 835520 R phosphopantetheinyl transferase complement(834786..835520) Agrobacterium vitis S4 7380600 YP_002547588.1 CDS recX NC_011988.1 835584 836141 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(835584..836141) Agrobacterium vitis S4 7380601 YP_002547589.1 CDS Avi_5815 NC_011988.1 836406 837431 D quinone oxidoreductase 836406..837431 Agrobacterium vitis S4 7380602 YP_002547590.1 CDS Avi_5816 NC_011988.1 837444 837926 R acetyltransferase complement(837444..837926) Agrobacterium vitis S4 7380603 YP_002547591.1 CDS Avi_5817 NC_011988.1 838010 838588 R hypothetical protein complement(838010..838588) Agrobacterium vitis S4 7380604 YP_002547592.1 CDS ileS NC_011988.1 838925 841888 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(838925..841888) Agrobacterium vitis S4 7380605 YP_002547593.1 CDS Avi_5820 NC_011988.1 842373 843848 R monocarboxylic acid permease complement(842373..843848) Agrobacterium vitis S4 7380606 YP_002547594.1 CDS Avi_5821 NC_011988.1 843838 844035 R hypothetical protein complement(843838..844035) Agrobacterium vitis S4 7380607 YP_002547595.1 CDS Avi_5822 NC_011988.1 844168 844437 R hypothetical protein complement(844168..844437) Agrobacterium vitis S4 7380608 YP_002547596.1 CDS dapA NC_011988.1 844581 845492 R dihydrodipicolinate synthase complement(844581..845492) Agrobacterium vitis S4 7380609 YP_002547597.1 CDS Avi_5824 NC_011988.1 845515 845925 R hypothetical protein complement(845515..845925) Agrobacterium vitis S4 7380610 YP_002547598.1 CDS ribF NC_011988.1 846286 847266 R catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase complement(846286..847266) Agrobacterium vitis S4 7380611 YP_002547599.1 CDS Avi_5827 NC_011988.1 847279 848130 R hypothetical protein complement(847279..848130) Agrobacterium vitis S4 7380612 YP_002547600.1 CDS Avi_5828 NC_011988.1 848237 849628 R chromate transport protein chrA complement(848237..849628) Agrobacterium vitis S4 7380613 YP_002547601.1 CDS groES NC_011988.1 849752 850048 D 10 KD chaperonin (protein CPN10) 849752..850048 Agrobacterium vitis S4 7380614 YP_002547602.1 CDS groEL NC_011988.1 850116 851759 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; chaperonin GroEL 850116..851759 Agrobacterium vitis S4 7380615 YP_002547603.1 CDS Avi_5832 NC_011988.1 852346 852762 D hypothetical protein 852346..852762 Agrobacterium vitis S4 7380616 YP_002547604.1 CDS hyuB NC_011988.1 853063 854754 D hydantoin utilization protein 853063..854754 Agrobacterium vitis S4 7380617 YP_002547605.1 CDS hyuA NC_011988.1 854751 856814 D hydantoin utilization protein 854751..856814 Agrobacterium vitis S4 7380618 YP_002547606.1 CDS potG NC_011988.1 856816 857910 D ABC transporter nucleotide binding/ATPase (putrescine) 856816..857910 Agrobacterium vitis S4 7380619 YP_002547607.1 CDS Avi_5836 NC_011988.1 857977 859155 D ABC transporter substrate binding protein (spermidine/putrescine) 857977..859155 Agrobacterium vitis S4 7380620 YP_002547608.1 CDS Avi_5839 NC_011988.1 859454 860320 D spermidine/putrescine ABC transporter permease 859454..860320 Agrobacterium vitis S4 7380621 YP_002547609.1 CDS potI NC_011988.1 860317 861114 D putrescine ABC transporter permease 860317..861114 Agrobacterium vitis S4 7380622 YP_002547610.1 CDS metF NC_011988.1 861121 862011 R methylenetetrahydrofolate reductase complement(861121..862011) Agrobacterium vitis S4 7380623 YP_002547611.1 CDS nspC NC_011988.1 862274 863371 D carboxynorspermidine decarboxylase 862274..863371 Agrobacterium vitis S4 7380624 YP_002547612.1 CDS Avi_5844 NC_011988.1 863410 864651 D hypothetical protein 863410..864651 Agrobacterium vitis S4 7380625 YP_002547613.1 CDS Avi_5845 NC_011988.1 864720 866456 R biotin carboxylase complement(864720..866456) Agrobacterium vitis S4 7380626 YP_002547614.1 CDS Avi_5847 NC_011988.1 866477 868102 R hypothetical protein complement(866477..868102) Agrobacterium vitis S4 7380627 YP_002547615.1 CDS Avi_5849 NC_011988.1 868110 868916 R hypothetical protein complement(868110..868916) Agrobacterium vitis S4 7380628 YP_002547616.1 CDS Avi_5851 NC_011988.1 869031 869795 R LamB/YcsF family protein complement(869031..869795) Agrobacterium vitis S4 7380629 YP_002547617.1 CDS Avi_5852 NC_011988.1 869830 871107 R hypothetical protein complement(869830..871107) Agrobacterium vitis S4 7380630 YP_002547618.1 CDS Avi_5853 NC_011988.1 871393 872058 D GntR family transcriptional regulator 871393..872058 Agrobacterium vitis S4 7380631 YP_002547619.1 CDS putR NC_011988.1 872059 872523 R transcriptional regulator AsnC family complement(872059..872523) Agrobacterium vitis S4 7380632 YP_002547620.1 CDS Avi_5856 NC_011988.1 872686 873699 D catalyzes conversion of 1-aminocyclopropane-1-carboxylate to ammonia and alpha-ketobutyrate; 1-aminocyclopropane-1-carboxylate deaminase 872686..873699 Agrobacterium vitis S4 7380633 YP_002547621.1 CDS Avi_5857 NC_011988.1 873748 874230 R hypothetical protein complement(873748..874230) Agrobacterium vitis S4 7380634 YP_002547622.1 CDS Avi_5858 NC_011988.1 874503 875441 R acetyltransferase complement(874503..875441) Agrobacterium vitis S4 7380635 YP_002547623.1 CDS Avi_5861 NC_011988.1 875679 876602 D 2-hydroxyacid dehydrogenase 875679..876602 Agrobacterium vitis S4 7380636 YP_002547624.1 CDS attK2 NC_011988.1 876697 878154 D succinate semialdehyde dehydrogenase 876697..878154 Agrobacterium vitis S4 7380637 YP_002547625.1 CDS Avi_5863 NC_011988.1 878185 879084 R Transcriptional regulator complement(878185..879084) Agrobacterium vitis S4 7380638 YP_002547626.1 CDS Avi_5865 NC_011988.1 879364 880140 D hypothetical protein 879364..880140 Agrobacterium vitis S4 7380639 YP_002547627.1 CDS Avi_5866 NC_011988.1 880153 880395 D hypothetical protein 880153..880395 Agrobacterium vitis S4 7380640 YP_002547628.1 CDS accC NC_011988.1 880392 881780 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 880392..881780 Agrobacterium vitis S4 7380641 YP_002547629.1 CDS Avi_5869 NC_011988.1 881780 882655 D Allophanate hydrolase subunit 1 881780..882655 Agrobacterium vitis S4 7380642 YP_002547630.1 CDS Avi_5870 NC_011988.1 882645 883622 D hypothetical protein 882645..883622 Agrobacterium vitis S4 7380643 YP_002547631.1 CDS Avi_5871 NC_011988.1 883655 884653 R GntR family transcriptional regulator complement(883655..884653) Agrobacterium vitis S4 7380644 YP_002547632.1 CDS Avi_5873 NC_011988.1 885184 886257 D ABC transporter ATPase 885184..886257 Agrobacterium vitis S4 7380645 YP_002547633.1 CDS Avi_5874 NC_011988.1 886250 887149 D spermidine/putrescine ABC transporter permease 886250..887149 Agrobacterium vitis S4 7380646 YP_002547634.1 CDS Avi_5876 NC_011988.1 887151 887996 D spermidine/putrescine ABC transporter permease 887151..887996 Agrobacterium vitis S4 7380647 YP_002547635.1 CDS Avi_5877 NC_011988.1 887993 888742 D short chain fatty acid oxidoreductase 887993..888742 Agrobacterium vitis S4 7380648 YP_002547636.1 CDS Avi_5878 NC_011988.1 888762 889529 D dehydrogenase 888762..889529 Agrobacterium vitis S4 7380649 YP_002547637.1 CDS Avi_5880 NC_011988.1 889516 890829 D ABC transporter substrate binding protein (spermidine/putrescine) 889516..890829 Agrobacterium vitis S4 7380650 YP_002547638.1 CDS Avi_5881 NC_011988.1 891039 892148 D ABC transporter nucleotide binding/ATPase (spermidine/putrescine) 891039..892148 Agrobacterium vitis S4 7380651 YP_002547639.1 CDS Avi_5882 NC_011988.1 892196 893077 D polysaccharide deacetylase family protein 892196..893077 Agrobacterium vitis S4 7380652 YP_002547640.1 CDS Avi_5883 NC_011988.1 893132 893464 D hypothetical protein 893132..893464 Agrobacterium vitis S4 7380981 YP_002547641.1 CDS Avi_5884 NC_011988.1 893457 894473 D hypothetical protein 893457..894473 Agrobacterium vitis S4 7380982 YP_002547642.1 CDS Avi_5885 NC_011988.1 894547 895764 D ABC transporter substrate binding protein (spermidine/putrescine) 894547..895764 Agrobacterium vitis S4 7380983 YP_002547643.1 CDS gatA NC_011988.1 895787 897166 D hypothetical protein 895787..897166 Agrobacterium vitis S4 7380984 YP_002547644.1 CDS lrp NC_011988.1 897173 897649 R transcriptional regulator AsnC family complement(897173..897649) Agrobacterium vitis S4 7380985 YP_002547645.1 CDS Avi_5888 NC_011988.1 897873 899210 D oxidoreductase 897873..899210 Agrobacterium vitis S4 7380986 YP_002547646.1 CDS Avi_5890 NC_011988.1 899428 900909 D sulfate permease 899428..900909 Agrobacterium vitis S4 7380987 YP_002547647.1 CDS cysG NC_011988.1 901178 902659 R siroheme synthase complement(901178..902659) Agrobacterium vitis S4 7380988 YP_002547648.1 CDS nasA NC_011988.1 902631 905288 R nitrate reductase large subunit complement(902631..905288) Agrobacterium vitis S4 7380989 YP_002547649.1 CDS nirD NC_011988.1 905294 905629 R nitrite reductase small subunit complement(905294..905629) Agrobacterium vitis S4 7380990 YP_002547650.1 CDS nirB NC_011988.1 905634 908081 R nitrite reductase large subunit complement(905634..908081) Agrobacterium vitis S4 7380991 YP_002547651.1 CDS nrtC NC_011988.1 908087 908890 R ABC transporter nucleotide binding/ATPase (nitrate) complement(908087..908890) Agrobacterium vitis S4 7380992 YP_002547652.1 CDS nrtB NC_011988.1 908899 909792 R nitrate ABC transporter permease complement(908899..909792) Agrobacterium vitis S4 7380993 YP_002547653.1 CDS nrtA NC_011988.1 909816 911114 R ABC transporter substrate binding protein (nitrate) complement(909816..911114) Agrobacterium vitis S4 7380994 YP_002547654.1 CDS nrtC NC_011988.1 911524 912795 R ABC transporter nucleotide binding/ATPase (nitrate) complement(911524..912795) Agrobacterium vitis S4 7380995 YP_002547655.1 CDS nasT NC_011988.1 912808 913395 R two component response regulator complement(912808..913395) Agrobacterium vitis S4 7380996 YP_002547656.1 CDS Avi_5902 NC_011988.1 913864 914589 D hypothetical protein 913864..914589 Agrobacterium vitis S4 7380997 YP_002547657.1 CDS Avi_5904 NC_011988.1 914636 915595 R hypothetical protein complement(914636..915595) Agrobacterium vitis S4 7380998 YP_002547658.1 CDS Avi_5905 NC_011988.1 915835 916485 D hypothetical protein 915835..916485 Agrobacterium vitis S4 7380999 YP_002547659.1 CDS Avi_5907 NC_011988.1 916493 917410 R LysR family transcriptional regulator complement(916493..917410) Agrobacterium vitis S4 7381000 YP_002547660.1 CDS gcdH NC_011988.1 917559 918734 D glutaryl-CoA dehydrogenase 917559..918734 Agrobacterium vitis S4 7381001 YP_002547661.1 CDS caiB NC_011988.1 918745 919896 D L-carnitine dehydratase 918745..919896 Agrobacterium vitis S4 7381002 YP_002547662.1 CDS Avi_5910 NC_011988.1 920003 920491 D hypothetical protein 920003..920491 Agrobacterium vitis S4 7381003 YP_002547663.1 CDS Avi_5913 NC_011988.1 920703 921752 D aminopeptidase 920703..921752 Agrobacterium vitis S4 7381004 YP_002547664.1 CDS dat NC_011988.1 921780 922646 D catalyzes the transamination of D-amino acids and their alpha-keto acids; D-amino acid aminotransferase 921780..922646 Agrobacterium vitis S4 7381005 YP_002547665.1 CDS Avi_5915 NC_011988.1 922965 924473 R penicillin binding protein complement(922965..924473) Agrobacterium vitis S4 7381006 YP_002547666.1 CDS Avi_5916 NC_011988.1 924721 925755 D dipeptidase 924721..925755 Agrobacterium vitis S4 7381007 YP_002547667.1 CDS thiC NC_011988.1 926047 927879 D required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC 926047..927879 Agrobacterium vitis S4 7381008 YP_002547668.1 CDS thiO NC_011988.1 927881 928873 D glycine oxidase ThiO 927881..928873 Agrobacterium vitis S4 7381009 YP_002547669.1 CDS thiS NC_011988.1 928870 929067 D with ThiF, ThiG, and ThiO catalyzes the formation of the thiazole moiety of thiamine pyrophosphate; sulfur carrier protein ThiS 928870..929067 Agrobacterium vitis S4 7381010 YP_002547670.1 CDS thiG NC_011988.1 929069 929842 D functions in thiamine (vitamin B1) biosynthesis; in Bacillus subtilis this enzyme catalyzes the formation of thiazole from dehydroxyglycine and 1-deoxy-D-xylulose-5-phosphate and ThiS-thiocarboxylate; thiazole synthase 929069..929842 Agrobacterium vitis S4 7381011 YP_002547671.1 CDS Avi_5922 NC_011988.1 929839 930450 D thiamine-phosphate pyrophosphorylase 929839..930450 Agrobacterium vitis S4 7381012 YP_002547672.1 CDS Avi_5923 NC_011988.1 937523 939031 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 937523..939031 Agrobacterium vitis S4 7381160 YP_002547673.1 CDS exoP NC_011988.1 939138 941474 R exopolysaccharide polymerization/transport protein complement(939138..941474) Agrobacterium vitis S4 7381014 YP_002547674.1 CDS exoO NC_011988.1 942115 943110 R succinoglycan biosynthesis glycosyltransferase complement(942115..943110) Agrobacterium vitis S4 7381015 YP_002547675.1 CDS exoM NC_011988.1 943107 944039 R succinoglycan biosynthesis protein complement(943107..944039) Agrobacterium vitis S4 7381016 YP_002547676.1 CDS exoA NC_011988.1 944036 945061 R succinoglycan biosynthesis protein complement(944036..945061) Agrobacterium vitis S4 7381017 YP_002547677.1 CDS exoL NC_011988.1 945051 946295 R succinoglycan biosynthesis protein complement(945051..946295) Agrobacterium vitis S4 7381018 YP_002547678.1 CDS exoK NC_011988.1 946525 947331 R endo-1,3-1,4-beta-glycanase complement(946525..947331) Agrobacterium vitis S4 7381019 YP_002547679.1 CDS exoH NC_011988.1 947333 948409 R succinoglycan biosynthesis protein complement(947333..948409) Agrobacterium vitis S4 7381020 YP_002547680.1 CDS exoT NC_011988.1 948856 950334 R succinoglycan biosynthesis transport protein complement(948856..950334) Agrobacterium vitis S4 7381021 YP_002547681.1 CDS exoW NC_011988.1 950571 951530 D succinoglycan biosynthesis protein 950571..951530 Agrobacterium vitis S4 7381022 YP_002547682.1 CDS exoV NC_011988.1 951604 952569 D succinoglycan biosynthesis protein 951604..952569 Agrobacterium vitis S4 7381023 YP_002547683.1 CDS exoU NC_011988.1 952697 953713 R succinoglycan biosynthesis glycosyltransferase complement(952697..953713) Agrobacterium vitis S4 7381024 YP_002547684.1 CDS exoX NC_011988.1 953986 954261 R exopolysaccharide production repressor protein complement(953986..954261) Agrobacterium vitis S4 7381025 YP_002547685.1 CDS exoY NC_011988.1 955048 955725 D structural protein 955048..955725 Agrobacterium vitis S4 7381026 YP_002547686.1 CDS exoF NC_011988.1 955822 957102 D exopolysaccharide production protein 955822..957102 Agrobacterium vitis S4 7381027 YP_002547687.1 CDS exoQ NC_011988.1 957109 958386 D exopolysaccharide production protein 957109..958386 Agrobacterium vitis S4 7381028 YP_002547688.1 CDS Avi_5941 NC_011988.1 958911 959270 D hypothetical protein 958911..959270 Agrobacterium vitis S4 7381029 YP_002547689.1 CDS Avi_5942 NC_011988.1 959302 959598 D hypothetical protein 959302..959598 Agrobacterium vitis S4 7381030 YP_002547690.1 CDS Avi_5943 NC_011988.1 959653 960300 R hypothetical protein complement(959653..960300) Agrobacterium vitis S4 7381031 YP_002547691.1 CDS Avi_5945 NC_011988.1 960435 961388 R dioxygenase complement(960435..961388) Agrobacterium vitis S4 7381032 YP_002547692.1 CDS Avi_5946 NC_011988.1 961645 962583 D LysR family transcriptional regulator 961645..962583 Agrobacterium vitis S4 7381033 YP_002547693.1 CDS pssN NC_011988.1 962799 964019 D exopolysaccharide export protein 962799..964019 Agrobacterium vitis S4 7381034 YP_002547694.1 CDS Avi_5949 NC_011988.1 964089 964841 R TetR family transcriptional regulator complement(964089..964841) Agrobacterium vitis S4 7381035 YP_002547695.1 CDS Avi_5950 NC_011988.1 964941 966407 D crocetin dialdehyde 964941..966407 Agrobacterium vitis S4 7381036 YP_002547696.1 CDS Avi_5952 NC_011988.1 966710 968581 D membrane protein 966710..968581 Agrobacterium vitis S4 7381037 YP_002547697.1 CDS vdh NC_011988.1 968604 970085 D vanillin: NAD oxidoreductase 968604..970085 Agrobacterium vitis S4 7381038 YP_002547698.1 CDS Avi_5954 NC_011988.1 970177 970836 R TetR family transcriptional regulator complement(970177..970836) Agrobacterium vitis S4 7381039 YP_002547699.1 CDS Avi_5955 NC_011988.1 970941 971513 R hypothetical protein complement(970941..971513) Agrobacterium vitis S4 7381040 YP_002547700.1 CDS hutU NC_011988.1 971515 973188 R catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase complement(971515..973188) Agrobacterium vitis S4 7381041 YP_002547701.1 CDS hutG NC_011988.1 973191 973997 R N-formylglutamate amidohydrolase complement(973191..973997) Agrobacterium vitis S4 7381042 YP_002547702.1 CDS hutH NC_011988.1 973998 975536 R catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase complement(973998..975536) Agrobacterium vitis S4 7381043 YP_002547703.1 CDS hutI NC_011988.1 975552 976772 R imidazolonepropionase complement(975552..976772) Agrobacterium vitis S4 7381044 YP_002547704.1 CDS Avi_5960 NC_011988.1 976882 978231 D catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase 976882..978231 Agrobacterium vitis S4 7381045 YP_002547705.1 CDS Avi_5962 NC_011988.1 978458 979819 R nitrilotriacetate monooxygenase complement(978458..979819) Agrobacterium vitis S4 7381046 YP_002547706.1 CDS Avi_5963 NC_011988.1 979840 980589 R GntR family transcriptional regulator complement(979840..980589) Agrobacterium vitis S4 7381047 YP_002547707.1 CDS Avi_5964 NC_011988.1 980586 981377 R ABC transporter ATPase complement(980586..981377) Agrobacterium vitis S4 7381048 YP_002547708.1 CDS Avi_5965 NC_011988.1 981374 982042 R amino acid ABC transporter permease complement(981374..982042) Agrobacterium vitis S4 7381049 YP_002547709.1 CDS Avi_5966 NC_011988.1 982039 982680 R amino acid ABC transporter permease complement(982039..982680) Agrobacterium vitis S4 7381050 YP_002547710.1 CDS Avi_5967 NC_011988.1 982967 983794 R ABC-type amino acid transport/signal transduction periplasmic protein complement(982967..983794) Agrobacterium vitis S4 7381051 YP_002547711.1 CDS frcK NC_011988.1 984004 984639 R putative fructose transport system kinase complement(984004..984639) Agrobacterium vitis S4 7381052 YP_002547712.1 CDS frcA NC_011988.1 984636 985442 R ABC transporter nucleotide binding/ATPase (sugar) complement(984636..985442) Agrobacterium vitis S4 7381053 YP_002547713.1 CDS frcC NC_011988.1 985418 986500 R sugar ABC transporter permease complement(985418..986500) Agrobacterium vitis S4 7381054 YP_002547714.1 CDS frcB NC_011988.1 986696 987721 R ABC transporter substrate binding protein (sugar) complement(986696..987721) Agrobacterium vitis S4 7381055 YP_002547715.1 CDS frcR NC_011988.1 988071 989300 D transcriptional regulator ROK family 988071..989300 Agrobacterium vitis S4 7381056 YP_002547716.1 CDS Avi_5973 NC_011988.1 989301 989732 D hypothetical protein 989301..989732 Agrobacterium vitis S4 7381057 YP_002547717.1 CDS Avi_5975 NC_011988.1 989849 990616 R NAD/NADP dependent oxidoreductase complement(989849..990616) Agrobacterium vitis S4 7381058 YP_002547718.1 CDS Avi_5976 NC_011988.1 990658 991104 R transcriptional regulator AsnC family complement(990658..991104) Agrobacterium vitis S4 7381059 YP_002547719.1 CDS rocF NC_011988.1 991228 992160 D arginase 991228..992160 Agrobacterium vitis S4 7381060 YP_002547720.1 CDS ocd NC_011988.1 992160 993215 D catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase 992160..993215 Agrobacterium vitis S4 7381061 YP_002547721.1 CDS Avi_5980 NC_011988.1 993302 993460 D stress induced protein 993302..993460 Agrobacterium vitis S4 7381062 YP_002547722.1 CDS yteR NC_011988.1 993593 994708 D di-transpoly-cis-decaprenylcistransferase 993593..994708 Agrobacterium vitis S4 7380816 YP_002547723.1 CDS tonB NC_011988.1 994731 995684 R tonB protein complement(994731..995684) Agrobacterium vitis S4 7380817 YP_002547724.1 CDS exbD NC_011988.1 995681 996148 R TonB system transport protein ExbD complement(995681..996148) Agrobacterium vitis S4 7380818 YP_002547725.1 CDS exbB NC_011988.1 996153 997178 R tonB-system energizer ExbB complement(996153..997178) Agrobacterium vitis S4 7380819 YP_002547726.1 CDS Avi_5986 NC_011988.1 997212 997766 D hypothetical protein 997212..997766 Agrobacterium vitis S4 7380820 YP_002547727.1 CDS Avi_5989 NC_011988.1 997946 998719 R transcriptional regulator CRP family complement(997946..998719) Agrobacterium vitis S4 7380821 YP_002547728.1 CDS Avi_5991 NC_011988.1 998861 999289 D hypothetical protein 998861..999289 Agrobacterium vitis S4 7380822 YP_002547729.1 CDS Avi_5992 NC_011988.1 999342 999908 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(999342..999908) Agrobacterium vitis S4 7380823 YP_002547730.1 CDS Avi_5993 NC_011988.1 1000540 1000704 D hypothetical protein 1000540..1000704 Agrobacterium vitis S4 7380824 YP_002547731.1 CDS Avi_5995 NC_011988.1 1000715 1001182 D hypothetical protein 1000715..1001182 Agrobacterium vitis S4 7380825 YP_002547732.1 CDS Avi_5998 NC_011988.1 1001324 1002391 R hypothetical protein complement(1001324..1002391) Agrobacterium vitis S4 7380826 YP_002547733.1 CDS Avi_5999 NC_011988.1 1002646 1003641 R two component sensor kinase complement(1002646..1003641) Agrobacterium vitis S4 7380827 YP_002547734.1 CDS Avi_6000 NC_011988.1 1003819 1004613 R in Caulobacter crescentus, CC3477 is differentially expressed in minimal salts media with glucose as compared to complex media; two-component response regulator complement(1003819..1004613) Agrobacterium vitis S4 7380828 YP_002547735.1 CDS Avi_6001 NC_011988.1 1005428 1005559 D hypothetical protein 1005428..1005559 Agrobacterium vitis S4 7380829 YP_002547736.1 CDS Avi_6002 NC_011988.1 1005695 1006207 R DNA-binding ferritin-like protein (oxidative damage protectant) complement(1005695..1006207) Agrobacterium vitis S4 7380830 YP_002547737.1 CDS Avi_6003 NC_011988.1 1006318 1006752 R hypothetical protein complement(1006318..1006752) Agrobacterium vitis S4 7380831 YP_002547738.1 CDS Avi_6004 NC_011988.1 1006756 1007055 R hypothetical protein complement(1006756..1007055) Agrobacterium vitis S4 7380832 YP_002547739.1 CDS Avi_6005 NC_011988.1 1007342 1007539 D hypothetical protein 1007342..1007539 Agrobacterium vitis S4 7380833 YP_002547740.1 CDS Avi_6007 NC_011988.1 1007636 1009255 R catalyzes the ATP-dependent formation of a phosphodiester at the site of a single strand break in duplex DNA; ATP-dependent DNA ligase complement(1007636..1009255) Agrobacterium vitis S4 7380834 YP_002547741.1 CDS Avi_6008 NC_011988.1 1009252 1010265 R hypothetical protein complement(1009252..1010265) Agrobacterium vitis S4 7380835 YP_002547742.1 CDS Avi_6009 NC_011988.1 1010412 1010648 D transcriptional regulator Lrp family 1010412..1010648 Agrobacterium vitis S4 7380836 YP_002547743.1 CDS Avi_6010 NC_011988.1 1010671 1013595 R hypothetical protein complement(1010671..1013595) Agrobacterium vitis S4 7380837 YP_002547744.1 CDS purU NC_011988.1 1013874 1014758 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(1013874..1014758) Agrobacterium vitis S4 7380838 YP_002547745.1 CDS Avi_6012 NC_011988.1 1015119 1016210 D endoglucanase precursor 1015119..1016210 Agrobacterium vitis S4 7380839 YP_002547746.1 CDS rfe NC_011988.1 1016153 1017370 R UDP-phosphate alpha N-acetylglucosaminyltransferase complement(1016153..1017370) Agrobacterium vitis S4 7380840 YP_002547747.1 CDS Avi_6014 NC_011988.1 1017460 1019673 R exopolysaccharide polymerization/transport protein complement(1017460..1019673) Agrobacterium vitis S4 7380841 YP_002547748.1 CDS Avi_6015 NC_011988.1 1019941 1021134 D GumH protein 1019941..1021134 Agrobacterium vitis S4 7380842 YP_002547749.1 CDS Avi_6016 NC_011988.1 1021131 1022282 D hypothetical protein 1021131..1022282 Agrobacterium vitis S4 7380843 YP_002547750.1 CDS Avi_6017 NC_011988.1 1022337 1023857 D polysaccharide efflux transporter 1022337..1023857 Agrobacterium vitis S4 7380844 YP_002547751.1 CDS Avi_6018 NC_011988.1 1024016 1025926 D hypothetical protein 1024016..1025926 Agrobacterium vitis S4 7380845 YP_002547752.1 CDS Avi_6019 NC_011988.1 1025906 1028368 R mannosidase complement(1025906..1028368) Agrobacterium vitis S4 7380846 YP_002547753.1 CDS Avi_6020 NC_011988.1 1028423 1029385 R hypothetical protein complement(1028423..1029385) Agrobacterium vitis S4 7380847 YP_002547754.1 CDS Avi_6021 NC_011988.1 1029388 1030296 R hypothetical protein complement(1029388..1030296) Agrobacterium vitis S4 7380848 YP_002547755.1 CDS acd NC_011988.1 1030301 1031500 R acyl-CoA dehydrogenase complement(1030301..1031500) Agrobacterium vitis S4 7380849 YP_002547756.1 CDS Avi_6023 NC_011988.1 1031500 1031751 R Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; acyl carrier protein complement(1031500..1031751) Agrobacterium vitis S4 7380850 YP_002547757.1 CDS kamA NC_011988.1 1031984 1033033 R L-lysine 2,3-aminomutase complement(1031984..1033033) Agrobacterium vitis S4 7380851 YP_002547758.1 CDS poxA NC_011988.1 1033030 1034103 R lysyl-tRNA synthetase complement(1033030..1034103) Agrobacterium vitis S4 7380852 YP_002547759.1 CDS efp NC_011988.1 1034266 1034835 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1034266..1034835 Agrobacterium vitis S4 7380853 YP_002547760.1 CDS nodT NC_011988.1 1035056 1036507 R nodulation protein T precursor complement(1035056..1036507) Agrobacterium vitis S4 7380854 YP_002547761.1 CDS acrB NC_011988.1 1036618 1039752 R acriflavin resistance protein B complement(1036618..1039752) Agrobacterium vitis S4 7380855 YP_002547762.1 CDS acrA NC_011988.1 1039797 1041032 R acriflavin resistance protein A complement(1039797..1041032) Agrobacterium vitis S4 7380856 YP_002547763.1 CDS ameR NC_011988.1 1041205 1041873 R TetR family transcriptional regulator complement(1041205..1041873) Agrobacterium vitis S4 7380857 YP_002547764.1 CDS purC NC_011988.1 1041879 1042829 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(1041879..1042829) Agrobacterium vitis S4 7380858 YP_002547765.1 CDS Avi_6032 NC_011988.1 1043045 1043698 R membrane protein complement(1043045..1043698) Agrobacterium vitis S4 7380859 YP_002547766.1 CDS bexD NC_011988.1 1052613 1053755 D polysaccharide export protein 1052613..1053755 Agrobacterium vitis S4 7380864 YP_002547767.1 CDS impN NC_011988.1 1053904 1054809 R serine/threonine protein kinase complement(1053904..1054809) Agrobacterium vitis S4 7380865 YP_002547768.1 CDS impM NC_011988.1 1054796 1056247 R serine/threonine phosphoprotein phosphatase complement(1054796..1056247) Agrobacterium vitis S4 7380866 YP_002547769.1 CDS impL NC_011988.1 1056348 1059842 R IcmF family protein complement(1056348..1059842) Agrobacterium vitis S4 7380867 YP_002547770.1 CDS impK NC_011988.1 1059839 1061374 R OmpA-type porin complement(1059839..1061374) Agrobacterium vitis S4 7380868 YP_002547771.1 CDS impJ NC_011988.1 1061371 1062711 R hypothetical protein complement(1061371..1062711) Agrobacterium vitis S4 7380869 YP_002547772.1 CDS impI NC_011988.1 1062701 1063960 R forkhead-type phosphopeptide-binding protein complement(1062701..1063960) Agrobacterium vitis S4 7380870 YP_002547773.1 CDS impH NC_011988.1 1063957 1064967 R hypothetical protein complement(1063957..1064967) Agrobacterium vitis S4 7380871 YP_002547774.1 CDS impG NC_011988.1 1064976 1066757 R hypothetical protein complement(1064976..1066757) Agrobacterium vitis S4 7380872 YP_002547775.1 CDS impF NC_011988.1 1066750 1067259 R hypothetical protein complement(1066750..1067259) Agrobacterium vitis S4 7380873 YP_002547776.1 CDS impE NC_011988.1 1067252 1068079 R hypothetical protein complement(1067252..1068079) Agrobacterium vitis S4 7380874 YP_002547777.1 CDS impD NC_011988.1 1068076 1069443 R hypothetical protein complement(1068076..1069443) Agrobacterium vitis S4 7380875 YP_002547778.1 CDS impC NC_011988.1 1069546 1071027 R hypothetical protein complement(1069546..1071027) Agrobacterium vitis S4 7380876 YP_002547779.1 CDS impB NC_011988.1 1071100 1071615 R hypothetical protein complement(1071100..1071615) Agrobacterium vitis S4 7380877 YP_002547780.1 CDS impA NC_011988.1 1071691 1072767 R hypothetical protein complement(1071691..1072767) Agrobacterium vitis S4 7380878 YP_002547781.1 CDS clpB NC_011988.1 1072987 1075698 D ATP-dependent Clp protease ATP-binding subunit 1072987..1075698 Agrobacterium vitis S4 7380879 YP_002547782.1 CDS Avi_6054 NC_011988.1 1075761 1076237 D hypothetical protein 1075761..1076237 Agrobacterium vitis S4 7380880 YP_002547783.1 CDS Avi_6056 NC_011988.1 1076487 1076921 D hypothetical protein 1076487..1076921 Agrobacterium vitis S4 7380881 YP_002547784.1 CDS secD NC_011988.1 1077785 1080304 D part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF 1077785..1080304 Agrobacterium vitis S4 7380882 YP_002547785.1 CDS Avi_6060 NC_011988.1 1080351 1081715 R hypothetical protein complement(1080351..1081715) Agrobacterium vitis S4 7380883 YP_002547786.1 CDS acd NC_011988.1 1081883 1082863 R acyl-CoA dehydrogenase complement(1081883..1082863) Agrobacterium vitis S4 7380884 YP_002547787.1 CDS Avi_6062 NC_011988.1 1083165 1084274 R monooxygenase complement(1083165..1084274) Agrobacterium vitis S4 7380885 YP_002547788.1 CDS Avi_6064 NC_011988.1 1084565 1084936 D transcriptional regulator ArsR family 1084565..1084936 Agrobacterium vitis S4 7380886 YP_002547789.1 CDS arsB NC_011988.1 1084941 1086035 D arsenical pump membrane protein 1084941..1086035 Agrobacterium vitis S4 7380887 YP_002547790.1 CDS arsC NC_011988.1 1086032 1086454 D arsenate reductase 1086032..1086454 Agrobacterium vitis S4 7380888 YP_002547791.1 CDS arsH NC_011988.1 1086456 1087154 D arsenical resistance protein ArsH 1086456..1087154 Agrobacterium vitis S4 7380889 YP_002547792.1 CDS Avi_6069 NC_011988.1 1087151 1088401 D hypothetical protein 1087151..1088401 Agrobacterium vitis S4 7380890 YP_002547793.1 CDS kdpE NC_011988.1 1088423 1089109 R two component response regulator complement(1088423..1089109) Agrobacterium vitis S4 7380891 YP_002547794.1 CDS kdpD NC_011988.1 1089106 1091814 R two component sensor kinase complement(1089106..1091814) Agrobacterium vitis S4 7380892 YP_002547795.1 CDS kdpC NC_011988.1 1091824 1092399 R K+-transporting ATPase C subunit complement(1091824..1092399) Agrobacterium vitis S4 7380893 YP_002547796.1 CDS kdpB NC_011988.1 1092402 1094465 R One of the components of the high-affinity ATP-driven potassium transport (or KDP) system, which catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit B complement(1092402..1094465) Agrobacterium vitis S4 7380894 YP_002547797.1 CDS kdpA NC_011988.1 1094484 1096193 R catalyzes the hydrolysis of ATP coupled with the exchange of hydrogen and potassium ions; potassium-transporting ATPase subunit A complement(1094484..1096193) Agrobacterium vitis S4 7380895 YP_002547798.1 CDS Avi_6076 NC_011988.1 1096680 1098482 R membrane protein complement(1096680..1098482) Agrobacterium vitis S4 7380896 YP_002547799.1 CDS recQ NC_011988.1 1098878 1100734 D ATP-dependent DNA helicase RecQ 1098878..1100734 Agrobacterium vitis S4 7380897 YP_002547800.1 CDS Avi_6078 NC_011988.1 1100750 1102015 D hypothetical protein 1100750..1102015 Agrobacterium vitis S4 7380898 YP_002547801.1 CDS dadA NC_011988.1 1102029 1103294 R catalyzes the oxidative deamination of D-amino acids; D-amino acid dehydrogenase small subunit complement(1102029..1103294) Agrobacterium vitis S4 7380733 YP_002547802.1 CDS alr NC_011988.1 1103312 1104436 R alanine racemase complement(1103312..1104436) Agrobacterium vitis S4 7380734 YP_002547803.1 CDS Avi_6081 NC_011988.1 1104593 1105027 D transcriptional regulator 1104593..1105027 Agrobacterium vitis S4 7380735 YP_002547804.1 CDS Avi_6082 NC_011988.1 1105129 1105821 D GntR family transcriptional regulator 1105129..1105821 Agrobacterium vitis S4 7380736 YP_002547805.1 CDS Avi_6083 NC_011988.1 1105923 1106525 D hypothetical protein 1105923..1106525 Agrobacterium vitis S4 7380737 YP_002547806.1 CDS Avi_6084 NC_011988.1 1106540 1107376 D hydrolase 1106540..1107376 Agrobacterium vitis S4 7380738 YP_002547807.1 CDS Avi_6086 NC_011988.1 1107408 1108328 D flavoprotein oxidoreductase 1107408..1108328 Agrobacterium vitis S4 7380739 YP_002547808.1 CDS Avi_6087 NC_011988.1 1108332 1109369 D alkanal monooxygenase alpha chain 1108332..1109369 Agrobacterium vitis S4 7380740 YP_002547809.1 CDS dhaS NC_011988.1 1109374 1110837 D aldehyde dehydrogenase 1109374..1110837 Agrobacterium vitis S4 7380741 YP_002547810.1 CDS Avi_6089 NC_011988.1 1110919 1111929 D ABC transporter substrate binding protein (polyamine) 1110919..1111929 Agrobacterium vitis S4 7380742 YP_002547811.1 CDS Avi_6090 NC_011988.1 1112017 1112919 D polyamine ABC transporter permease 1112017..1112919 Agrobacterium vitis S4 7380743 YP_002547812.1 CDS Avi_6091 NC_011988.1 1112921 1113721 D polyamine ABC transporter permease 1112921..1113721 Agrobacterium vitis S4 7380744 YP_002547813.1 CDS Avi_6092 NC_011988.1 1113718 1114794 D ABC transporter nucleotide binding/ATPase (polyamine) 1113718..1114794 Agrobacterium vitis S4 7380745 YP_002547814.1 CDS attK NC_011988.1 1114954 1116345 D NAD-dependent succinate aldehyde dehydrogenase 1114954..1116345 Agrobacterium vitis S4 7380746 YP_002547815.1 CDS Avi_6094 NC_011988.1 1116447 1117271 R hypothetical protein complement(1116447..1117271) Agrobacterium vitis S4 7380747 YP_002547816.1 CDS Avi_6095 NC_011988.1 1117292 1117717 R hypothetical protein complement(1117292..1117717) Agrobacterium vitis S4 7380748 YP_002547817.1 CDS fdh NC_011988.1 1117737 1118768 R D-threo-aldose 1-dehydrogenase complement(1117737..1118768) Agrobacterium vitis S4 7380749 YP_002547818.1 CDS Avi_6097 NC_011988.1 1118785 1119792 R sugar ABC transporter permease complement(1118785..1119792) Agrobacterium vitis S4 7380750 YP_002547819.1 CDS rbsC NC_011988.1 1119796 1120788 R ribose ABC transporter permease complement(1119796..1120788) Agrobacterium vitis S4 7380751 YP_002547820.1 CDS rbsA NC_011988.1 1120785 1122293 R ABC transporter nucleotide binding/ATPase (ribose) complement(1120785..1122293) Agrobacterium vitis S4 7380752 YP_002547821.1 CDS Avi_6100 NC_011988.1 1122365 1123402 R carbohydrate binding protein complement(1122365..1123402) Agrobacterium vitis S4 7380753 YP_002547822.1 CDS Avi_6101 NC_011988.1 1123445 1124557 R dehydrogenase complement(1123445..1124557) Agrobacterium vitis S4 7380754 YP_002547823.1 CDS Avi_6102 NC_011988.1 1124848 1125537 D GntR family transcriptional regulator 1124848..1125537 Agrobacterium vitis S4 7380755 YP_002547824.1 CDS garD NC_011988.1 1125534 1127066 D D-galactarate dehydratase 1125534..1127066 Agrobacterium vitis S4 7380756 YP_002547825.1 CDS Avi_6104 NC_011988.1 1127177 1128742 D dehydrogenase 1127177..1128742 Agrobacterium vitis S4 7380757 YP_002547826.1 CDS Avi_6105 NC_011988.1 1128777 1129574 D short-chain dehydrogenase/reductase 1128777..1129574 Agrobacterium vitis S4 7380758 YP_002547827.1 CDS gldA NC_011988.1 1129605 1130729 D forms dimers and octamers; involved in conversion of glycerol to dihydroxy-acetone; glycerol dehydrogenase 1129605..1130729 Agrobacterium vitis S4 7380759 YP_002547828.1 CDS tctE NC_011988.1 1130754 1132157 R two component sensor kinase complement(1130754..1132157) Agrobacterium vitis S4 7380760 YP_002547829.1 CDS tctD NC_011988.1 1132154 1132834 R two component response regulator complement(1132154..1132834) Agrobacterium vitis S4 7380761 YP_002547830.1 CDS Avi_6109 NC_011988.1 1132962 1134086 D ABC transporter substrate binding protein (iron) 1132962..1134086 Agrobacterium vitis S4 7380762 YP_002547831.1 CDS Avi_6110 NC_011988.1 1134339 1135283 D hypothetical protein 1134339..1135283 Agrobacterium vitis S4 7380763 YP_002547832.1 CDS Avi_6111 NC_011988.1 1135280 1135774 D hypothetical protein 1135280..1135774 Agrobacterium vitis S4 7380764 YP_002547833.1 CDS Avi_6112 NC_011988.1 1135797 1137314 D hypothetical protein 1135797..1137314 Agrobacterium vitis S4 7380765 YP_002547834.1 CDS Avi_6114 NC_011988.1 1137606 1137773 D hypothetical protein 1137606..1137773 Agrobacterium vitis S4 7380766 YP_002547835.1 CDS Avi_6115 NC_011988.1 1137868 1138929 R hypothetical protein complement(1137868..1138929) Agrobacterium vitis S4 7380767 YP_002547836.1 CDS pcaF NC_011988.1 1139326 1140531 R catalyzes the thiolytic cleavage of beta-ketoadipyl-CoA to succinate and acetyl-CoA; beta-ketoadipyl CoA thiolase complement(1139326..1140531) Agrobacterium vitis S4 7380768 YP_002547837.1 CDS pcaJ NC_011988.1 1140541 1141230 R 3-oxoadipate CoA-transferase subunit B complement(1140541..1141230) Agrobacterium vitis S4 7380769 YP_002547838.1 CDS pcaI NC_011988.1 1141227 1141934 R 3-oxoadipate CoA-transferase subunit A complement(1141227..1141934) Agrobacterium vitis S4 7380770 YP_002547839.1 CDS pcaR NC_011988.1 1142036 1142842 D transcriptional regulator IclR family 1142036..1142842 Agrobacterium vitis S4 7380771 YP_002547840.1 CDS pobR NC_011988.1 1142817 1143743 R AraC family transcriptional regulator complement(1142817..1143743) Agrobacterium vitis S4 7380772 YP_002547841.1 CDS pobA NC_011988.1 1143860 1145032 D catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase 1143860..1145032 Agrobacterium vitis S4 7380773 YP_002547842.1 CDS pcaQ NC_011988.1 1145041 1145895 R pca operon transcription factor PcaQ complement(1145041..1145895) Agrobacterium vitis S4 7380774 YP_002547843.1 CDS pcaD NC_011988.1 1146054 1146845 D 3-oxoadipate enol-lactonase 1146054..1146845 Agrobacterium vitis S4 7380775 YP_002547844.1 CDS pcaC NC_011988.1 1146888 1147298 D 4-carboxymuconolactone decarboxylase 1146888..1147298 Agrobacterium vitis S4 7380776 YP_002547845.1 CDS pcaH NC_011988.1 1147344 1148084 D protocatechuate 3,4-dioxygenase beta subunit 1147344..1148084 Agrobacterium vitis S4 7380777 YP_002547846.1 CDS pcaG NC_011988.1 1148086 1148703 D protocatechuate 3,4-dioxygenase alpha subunit 1148086..1148703 Agrobacterium vitis S4 7380778 YP_002547847.1 CDS pcaB NC_011988.1 1148712 1149770 D Catalyzes the cycloisomerization of cis,cis-muconate; 3-carboxy-cis,cis-muconate cycloisomerase 1148712..1149770 Agrobacterium vitis S4 7380779 YP_002547848.1 CDS Avi_6131 NC_011988.1 1149811 1150806 R zinc-binding alcohol dehydrogenase complement(1149811..1150806) Agrobacterium vitis S4 7380780 YP_002547849.1 CDS ftsK NC_011988.1 1151218 1154082 D ftsK cell division protein 1151218..1154082 Agrobacterium vitis S4 7380781 YP_002547850.1 CDS Avi_6134 NC_011988.1 1154309 1155355 R ABC transporter complement(1154309..1155355) Agrobacterium vitis S4 7380782 YP_002547851.1 CDS Avi_6135 NC_011988.1 1155352 1156893 R ABC transporter permease complement(1155352..1156893) Agrobacterium vitis S4 7380783 YP_002547852.1 CDS Avi_6136 NC_011988.1 1157144 1158133 R ABC transporter substrate binding protein (iron) complement(1157144..1158133) Agrobacterium vitis S4 7380784 YP_002547853.1 CDS Avi_6137 NC_011988.1 1158465 1160642 R hypothetical protein complement(1158465..1160642) Agrobacterium vitis S4 7380785 YP_002547854.1 CDS Avi_6139 NC_011988.1 1160804 1161277 R hypothetical protein complement(1160804..1161277) Agrobacterium vitis S4 7380786 YP_002547855.1 CDS Avi_6140 NC_011988.1 1161500 1161862 D hypothetical protein 1161500..1161862 Agrobacterium vitis S4 7380787 YP_002547856.1 CDS exsA NC_011988.1 1162623 1164434 D ABC transporter ATPase 1162623..1164434 Agrobacterium vitis S4 7380788 YP_002547857.1 CDS Avi_6144 NC_011988.1 1164497 1165798 R Signal transduction histidine kinase complement(1164497..1165798) Agrobacterium vitis S4 7380789 YP_002547858.1 CDS Avi_6145 NC_011988.1 1165798 1166487 R two component response regulator complement(1165798..1166487) Agrobacterium vitis S4 7380790 YP_002547859.1 CDS Avi_6146 NC_011988.1 1166745 1167497 D membrane protein 1166745..1167497 Agrobacterium vitis S4 7380791 YP_002547860.1 CDS Avi_6147 NC_011988.1 1167800 1168834 R Integrase complement(1167800..1168834) Agrobacterium vitis S4 7381167 YP_002547861.1 CDS Avi_6148 NC_011988.1 1168847 1169101 R hypothetical protein complement(1168847..1169101) Agrobacterium vitis S4 7380793 YP_002547862.1 CDS Avi_6150 NC_011988.1 1170141 1170488 R bacteriophage protein complement(1170141..1170488) Agrobacterium vitis S4 7380794 YP_002547863.1 CDS Avi_6151 NC_011988.1 1170804 1171625 R hypothetical protein complement(1170804..1171625) Agrobacterium vitis S4 7380795 YP_002547864.1 CDS Avi_6152 NC_011988.1 1171622 1172365 R hypothetical protein complement(1171622..1172365) Agrobacterium vitis S4 7380796 YP_002547865.1 CDS Avi_6153 NC_011988.1 1172347 1172892 R hypothetical protein complement(1172347..1172892) Agrobacterium vitis S4 7380797 YP_002547866.1 CDS dnaN NC_011988.1 1172885 1174021 R DNA polymerase III beta subunit complement(1172885..1174021) Agrobacterium vitis S4 7380798 YP_002547867.1 CDS Avi_6155 NC_011988.1 1174222 1174587 R hypothetical protein complement(1174222..1174587) Agrobacterium vitis S4 7380799 YP_002547868.1 CDS Avi_6157 NC_011988.1 1174738 1175061 R hypothetical protein complement(1174738..1175061) Agrobacterium vitis S4 7380800 YP_002547869.1 CDS Avi_6158 NC_011988.1 1175228 1175548 R hypothetical protein complement(1175228..1175548) Agrobacterium vitis S4 7380801 YP_002547870.1 CDS Avi_6161 NC_011988.1 1175980 1176852 R transcriptional regulator complement(1175980..1176852) Agrobacterium vitis S4 7380802 YP_002547871.1 CDS Avi_6162 NC_011988.1 1176917 1177267 R hypothetical protein complement(1176917..1177267) Agrobacterium vitis S4 7380803 YP_002547872.1 CDS Avi_6163 NC_011988.1 1177459 1178076 D hypothetical protein 1177459..1178076 Agrobacterium vitis S4 7380804 YP_002547873.1 CDS Avi_6164 NC_011988.1 1178083 1178481 D hypothetical protein 1178083..1178481 Agrobacterium vitis S4 7380805 YP_002547874.1 CDS Avi_6165 NC_011988.1 1179028 1179360 R hypothetical protein complement(1179028..1179360) Agrobacterium vitis S4 7380806 YP_002547875.1 CDS Avi_6166 NC_011988.1 1179433 1179627 D hypothetical protein 1179433..1179627 Agrobacterium vitis S4 7380807 YP_002547876.1 CDS Avi_6167 NC_011988.1 1179624 1180028 D hypothetical protein 1179624..1180028 Agrobacterium vitis S4 7380808 YP_002547877.1 CDS Avi_6168 NC_011988.1 1180097 1180555 D hypothetical protein 1180097..1180555 Agrobacterium vitis S4 7380809 YP_002547878.1 CDS Avi_6173 NC_011988.1 1181421 1183196 D hypothetical protein 1181421..1183196 Agrobacterium vitis S4 7380810 YP_002547879.1 CDS Avi_6175 NC_011988.1 1183422 1183769 D hypothetical protein 1183422..1183769 Agrobacterium vitis S4 7380811 YP_002547880.1 CDS Avi_6177 NC_011988.1 1183766 1184938 D DNA-cytosine methyltransferase 1183766..1184938 Agrobacterium vitis S4 7380812 YP_002547881.1 CDS Avi_6178 NC_011988.1 1184935 1186230 D hypothetical protein 1184935..1186230 Agrobacterium vitis S4 7380813 YP_002547882.1 CDS Avi_6179 NC_011988.1 1187055 1187486 D prophage LambdaSo holin 1187055..1187486 Agrobacterium vitis S4 7380814 YP_002547883.1 CDS Avi_6181 NC_011988.1 1187623 1188264 D phage terminase small subunit P27 family 1187623..1188264 Agrobacterium vitis S4 7380815 YP_002547884.1 CDS Avi_6182 NC_011988.1 1188275 1190017 D phage terminase-like protein large subunit 1188275..1190017 Agrobacterium vitis S4 7381238 YP_002547885.1 CDS Avi_6184 NC_011988.1 1190017 1191261 D portal protein 1190017..1191261 Agrobacterium vitis S4 7381239 YP_002547886.1 CDS Avi_6185 NC_011988.1 1191239 1192093 D ClpP-type protease 1191239..1192093 Agrobacterium vitis S4 7381240 YP_002547887.1 CDS Avi_6186 NC_011988.1 1192103 1193518 D phage major capsid protein HK97 family 1192103..1193518 Agrobacterium vitis S4 7381241 YP_002547888.1 CDS Avi_6187 NC_011988.1 1193571 1194008 D hypothetical protein 1193571..1194008 Agrobacterium vitis S4 7381242 YP_002547889.1 CDS Avi_6188 NC_011988.1 1194071 1194667 D hypothetical protein 1194071..1194667 Agrobacterium vitis S4 7381243 YP_002547890.1 CDS Avi_6189 NC_011988.1 1194667 1194987 D Bacteriophage head-tail adaptor 1194667..1194987 Agrobacterium vitis S4 7381244 YP_002547891.1 CDS Avi_6190 NC_011988.1 1194991 1195437 D hypothetical protein 1194991..1195437 Agrobacterium vitis S4 7381245 YP_002547892.1 CDS Avi_6192 NC_011988.1 1195441 1195836 D hypothetical protein 1195441..1195836 Agrobacterium vitis S4 7381246 YP_002547893.1 CDS Avi_6193 NC_011988.1 1195854 1196540 D outer capsid protein Hoc 1195854..1196540 Agrobacterium vitis S4 7381247 YP_002547894.1 CDS Avi_6194 NC_011988.1 1196548 1196931 D hypothetical protein 1196548..1196931 Agrobacterium vitis S4 7381248 YP_002547895.1 CDS Avi_6195 NC_011988.1 1196994 1197245 D hypothetical protein 1196994..1197245 Agrobacterium vitis S4 7381249 YP_002547896.1 CDS Avi_6196 NC_011988.1 1197356 1199635 D phage tail protein 1197356..1199635 Agrobacterium vitis S4 7381250 YP_002547897.1 CDS Avi_6197 NC_011988.1 1199635 1200354 D hypothetical protein 1199635..1200354 Agrobacterium vitis S4 7381251 YP_002547898.1 CDS Avi_6198 NC_011988.1 1200357 1200938 D Transcription elongation factor 1200357..1200938 Agrobacterium vitis S4 7381252 YP_002547899.1 CDS Avi_6199 NC_011988.1 1200917 1201228 R hypothetical protein complement(1200917..1201228) Agrobacterium vitis S4 7381253 YP_002547900.1 CDS Avi_6201 NC_011988.1 1201345 1203510 D hypothetical protein 1201345..1203510 Agrobacterium vitis S4 7381254 YP_002547901.1 CDS dsd NC_011988.1 1203654 1205477 D D-serine deaminase 1203654..1205477 Agrobacterium vitis S4 7381255 YP_002547902.1 CDS Avi_6204 NC_011988.1 1205746 1206354 D hypothetical protein 1205746..1206354 Agrobacterium vitis S4 7381256 YP_002547903.1 CDS emrA NC_011988.1 1206952 1207353 D multidrug resistance efflux pump 1206952..1207353 Agrobacterium vitis S4 7381257 YP_002547904.1 CDS Avi_6209 NC_011988.1 1207610 1207930 D hypothetical protein 1207610..1207930 Agrobacterium vitis S4 7381258 YP_002547905.1 CDS Avi_6210 NC_011988.1 1207932 1208453 D hypothetical protein 1207932..1208453 Agrobacterium vitis S4 7381259 YP_002547906.1 CDS Avi_6211 NC_011988.1 1208459 1208752 D hypothetical protein 1208459..1208752 Agrobacterium vitis S4 7381260 YP_002547907.1 CDS surf NC_011988.1 1209145 1209897 R SurF1 family protein complement(1209145..1209897) Agrobacterium vitis S4 7381261 YP_002547908.1 CDS cyoD NC_011988.1 1209962 1210360 R cytochrome o ubiquinol oxidase subunit IV complement(1209962..1210360) Agrobacterium vitis S4 7381262 YP_002547909.1 CDS cyoC NC_011988.1 1210357 1210974 R cytochrome o ubiquinol oxidase subunit III complement(1210357..1210974) Agrobacterium vitis S4 7381263 YP_002547910.1 CDS cyoB NC_011988.1 1210979 1212982 R cytochrome o ubiquinol oxidase subunit I complement(1210979..1212982) Agrobacterium vitis S4 7381264 YP_002547911.1 CDS cyoA NC_011988.1 1213023 1214135 R cytochrome o ubiquinol oxidase subunit II complement(1213023..1214135) Agrobacterium vitis S4 7381265 YP_002547912.1 CDS Avi_6218 NC_011988.1 1214585 1215184 D ECF family sigma factor 1214585..1215184 Agrobacterium vitis S4 7381266 YP_002547913.1 CDS Avi_6219 NC_011988.1 1215168 1215992 D transcriptional regulator 1215168..1215992 Agrobacterium vitis S4 7381267 YP_002547914.1 CDS Avi_6220 NC_011988.1 1216088 1216804 D hypothetical protein 1216088..1216804 Agrobacterium vitis S4 7381268 YP_002547915.1 CDS Avi_6221 NC_011988.1 1216918 1217367 R pseudoazurin complement(1216918..1217367) Agrobacterium vitis S4 7381269 YP_002547916.1 CDS nnrU NC_011988.1 1217641 1218354 D denitrification regulatory protein 1217641..1218354 Agrobacterium vitis S4 7381270 YP_002547917.1 CDS exsH NC_011988.1 1218532 1219959 D endo-1,3-1,4-beta-glycanase, C-terminal secretion signal protein 1218532..1219959 Agrobacterium vitis S4 7381271 YP_002547918.1 CDS dctA NC_011988.1 1220089 1221423 R C4-dicarboxylate transport protein complement(1220089..1221423) Agrobacterium vitis S4 7381165 YP_002547919.1 CDS dctB NC_011988.1 1221724 1223526 D two component sensor kinase for C4-dicarboxylate transport 1221724..1223526 Agrobacterium vitis S4 7381273 YP_002547920.1 CDS dctD NC_011988.1 1223523 1224899 D two component response regulator for C4-dicarboxylate transport 1223523..1224899 Agrobacterium vitis S4 7381274 YP_002547921.1 CDS Avi_6229 NC_011988.1 1224926 1225648 R TetR family transcriptional regulator complement(1224926..1225648) Agrobacterium vitis S4 7381275 YP_002547922.1 CDS Avi_6230 NC_011988.1 1225981 1226277 D hypothetical protein 1225981..1226277 Agrobacterium vitis S4 7381276 YP_002547923.1 CDS Avi_6233 NC_011988.1 1226525 1227433 R transcriptional regulator ROK family complement(1226525..1227433) Agrobacterium vitis S4 7381277 YP_002547924.1 CDS nagA NC_011988.1 1227430 1228632 R N-acetylglucosamine-6-phosphate deacetylase complement(1227430..1228632) Agrobacterium vitis S4 7381278 YP_002547925.1 CDS glmS NC_011988.1 1228629 1229651 R glucosamine--fructose-6-phosphate aminotransferase complement(1228629..1229651) Agrobacterium vitis S4 7381279 YP_002547926.1 CDS Avi_6236 NC_011988.1 1229680 1230432 R GntR family transcriptional regulator complement(1229680..1230432) Agrobacterium vitis S4 7381280 YP_002547927.1 CDS Avi_6237 NC_011988.1 1230864 1232045 D oxidoreductase 1230864..1232045 Agrobacterium vitis S4 7381281 YP_002547928.1 CDS malF NC_011988.1 1232055 1232939 D maltose ABC transporter permease 1232055..1232939 Agrobacterium vitis S4 7381282 YP_002547929.1 CDS malG NC_011988.1 1232936 1233796 D maltose ABC transporter permease 1232936..1233796 Agrobacterium vitis S4 7381283 YP_002547930.1 CDS malE NC_011988.1 1233853 1235076 D ABC transporter substrate binding protein (maltose) 1233853..1235076 Agrobacterium vitis S4 7381284 YP_002547931.1 CDS malK NC_011988.1 1235180 1236313 D ABC transporter nucleotide binding/ATPase (maltose/maltodextrin) 1235180..1236313 Agrobacterium vitis S4 7381285 YP_002547932.1 CDS Avi_6243 NC_011988.1 1236340 1237440 R hypothetical protein complement(1236340..1237440) Agrobacterium vitis S4 7381286 YP_002547933.1 CDS Avi_6244 NC_011988.1 1237442 1238746 R hypothetical protein complement(1237442..1238746) Agrobacterium vitis S4 7381287 YP_002547934.1 CDS Avi_6246 NC_011988.1 1238963 1239454 R hypothetical protein complement(1238963..1239454) Agrobacterium vitis S4 7381288 YP_002547935.1 CDS Avi_6248 NC_011988.1 1239567 1239953 D translation initiation inhibitor 1239567..1239953 Agrobacterium vitis S4 7381289 YP_002547936.1 CDS Avi_6249 NC_011988.1 1239973 1240836 D transcriptional regulator RpiR family 1239973..1240836 Agrobacterium vitis S4 7381290 YP_002547937.1 CDS Avi_6250 NC_011988.1 1240838 1241614 D short chain dehydrogenase 1240838..1241614 Agrobacterium vitis S4 7381291 YP_002547938.1 CDS Avi_6251 NC_011988.1 1241649 1243568 D beta-N-acetylhexosaminidase 1241649..1243568 Agrobacterium vitis S4 7381292 YP_002547939.1 CDS Avi_6252 NC_011988.1 1243580 1245046 D hypothetical protein 1243580..1245046 Agrobacterium vitis S4 7381293 YP_002547940.1 CDS Avi_6253 NC_011988.1 1245155 1246363 D MFS permease 1245155..1246363 Agrobacterium vitis S4 7381294 YP_002547941.1 CDS cutC NC_011988.1 1246388 1247143 D copper homeostasis protein 1246388..1247143 Agrobacterium vitis S4 7381295 YP_002547942.1 CDS Avi_6255 NC_011988.1 1247148 1247540 R acyl-CoA hydrolase complement(1247148..1247540) Agrobacterium vitis S4 7381296 YP_002547943.1 CDS Avi_6256 NC_011988.1 1247700 1248359 R Transcriptional regulator complement(1247700..1248359) Agrobacterium vitis S4 7381297 YP_002547944.1 CDS Avi_6257 NC_011988.1 1248589 1251060 D hypothetical protein 1248589..1251060 Agrobacterium vitis S4 7381298 YP_002547945.1 CDS Avi_6258 NC_011988.1 1251069 1252391 R two component sensor kinase complement(1251069..1252391) Agrobacterium vitis S4 7381299 YP_002547946.1 CDS Avi_6259 NC_011988.1 1252388 1253050 R two component response regulator complement(1252388..1253050) Agrobacterium vitis S4 7381300 YP_002547947.1 CDS Avi_6260 NC_011988.1 1253311 1253571 D hypothetical protein 1253311..1253571 Agrobacterium vitis S4 7381301 YP_002547948.1 CDS Avi_6262 NC_011988.1 1253825 1254616 R hypothetical protein complement(1253825..1254616) Agrobacterium vitis S4 7381166 YP_002547949.1 CDS rhaI NC_011988.1 1254654 1255946 R L-rhamnose catabolism isomerase complement(1254654..1255946) Agrobacterium vitis S4 7381303 YP_002547950.1 CDS rhaD NC_011988.1 1255985 1258096 R short chain dehydrogenase complement(1255985..1258096) Agrobacterium vitis S4 7381304 YP_002547951.1 CDS Avi_6265 NC_011988.1 1258297 1259109 D transcriptional regulator DeoR family 1258297..1259109 Agrobacterium vitis S4 7381305 YP_002547952.1 CDS rhaS NC_011988.1 1259165 1260160 D rhamnose ABC transporter rhamnose-binding protein 1259165..1260160 Agrobacterium vitis S4 7381306 YP_002547953.1 CDS Avi_6267 NC_011988.1 1260267 1261802 D ABC transporter ATPase 1260267..1261802 Agrobacterium vitis S4 7381307 YP_002547954.1 CDS Avi_6268 NC_011988.1 1261812 1262813 D ABC transporter permease 1261812..1262813 Agrobacterium vitis S4 7381308 YP_002547955.1 CDS Avi_6269 NC_011988.1 1262810 1263823 D ABC transporter permease 1262810..1263823 Agrobacterium vitis S4 7381309 YP_002547956.1 CDS rhaU NC_011988.1 1263826 1264149 D L-rhamnose 1-epimerase 1263826..1264149 Agrobacterium vitis S4 7381310 YP_002547957.1 CDS Avi_6271 NC_011988.1 1264146 1265552 D sugar kinase 1264146..1265552 Agrobacterium vitis S4 7381311 YP_002547958.1 CDS Avi_6272 NC_011988.1 1265676 1266527 D fumarylacetoacetate (FAA) hydrolase family protein 1265676..1266527 Agrobacterium vitis S4 7381312 YP_002547959.1 CDS Avi_6273 NC_011988.1 1266820 1268709 D GGDEF family protein 1266820..1268709 Agrobacterium vitis S4 7381313 YP_002547960.1 CDS Avi_6274 NC_011988.1 1268642 1269418 R hydantoin Racemase complement(1268642..1269418) Agrobacterium vitis S4 7381314 YP_002547961.1 CDS Avi_6275 NC_011988.1 1269443 1270261 R spermidine/putrescine ABC transporter permease complement(1269443..1270261) Agrobacterium vitis S4 7381315 YP_002547962.1 CDS Avi_6277 NC_011988.1 1270265 1271170 R spermidine/putrescine ABC transporter permease complement(1270265..1271170) Agrobacterium vitis S4 7381316 YP_002547963.1 CDS Avi_6278 NC_011988.1 1271249 1272538 R ABC transporter substrate binding protein (spermidine/putrescine) complement(1271249..1272538) Agrobacterium vitis S4 7381317 YP_002547964.1 CDS Avi_6279 NC_011988.1 1272566 1273690 R ABC transporter nucleotide binding/ATPase (spermidine/putrescine) complement(1272566..1273690) Agrobacterium vitis S4 7381318 YP_002547965.1 CDS Avi_6280 NC_011988.1 1273920 1274630 D GntR family transcriptional regulator 1273920..1274630 Agrobacterium vitis S4 7381319 YP_002547966.1 CDS Avi_6281 NC_011988.1 1274869 1275747 D hypothetical protein 1274869..1275747 Agrobacterium vitis S4 7381320 YP_002547967.1 CDS Avi_6283 NC_011988.1 1276132 1276680 D DNA-3-methyladenine glycosylase 1276132..1276680 Agrobacterium vitis S4 7381146 YP_002547968.1 CDS attE NC_011988.1 1276745 1277401 D ABC transporter ATPase 1276745..1277401 Agrobacterium vitis S4 7381147 YP_002547969.1 CDS attG NC_011988.1 1277401 1279809 D ABC transporter permease 1277401..1279809 Agrobacterium vitis S4 7381148 YP_002547970.1 CDS Avi_6286 NC_011988.1 1279799 1280878 D hypothetical protein 1279799..1280878 Agrobacterium vitis S4 7381149 YP_002547971.1 CDS Avi_6287 NC_011988.1 1281038 1282435 D ethanolamine ammonia-lyase large subunit 1281038..1282435 Agrobacterium vitis S4 7381150 YP_002547972.1 CDS Avi_6288 NC_011988.1 1282432 1283187 D catalyzes the formation of acetaldehyde from ethanolamine; ethanolamine ammonia-lyase small subunit 1282432..1283187 Agrobacterium vitis S4 7381151 YP_002547973.1 CDS Avi_0001 NC_011989.1 203 1024 D hypothetical protein 203..1024 Agrobacterium vitis S4 7387188 YP_002547974.1 CDS maf NC_011989.1 1056 1655 D septum formation inhibitor protein 1056..1655 Agrobacterium vitis S4 7389006 YP_002547975.1 CDS aroE NC_011989.1 1648 2508 D AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 1648..2508 Agrobacterium vitis S4 7389007 YP_002547976.1 CDS coaE NC_011989.1 2505 3092 D dephospho-CoA kinase 2505..3092 Agrobacterium vitis S4 7389008 YP_002547977.1 CDS dnaQ NC_011989.1 3187 3897 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 3187..3897 Agrobacterium vitis S4 7389009 YP_002547978.1 CDS secB NC_011989.1 3977 4438 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(3977..4438) Agrobacterium vitis S4 7389010 YP_002547979.1 CDS fxsA NC_011989.1 4528 5061 R hypothetical protein complement(4528..5061) Agrobacterium vitis S4 7389011 YP_002547980.1 CDS Avi_0009 NC_011989.1 5183 5881 D Membrane associated transporter protein 5183..5881 Agrobacterium vitis S4 7389012 YP_002547981.1 CDS mltA NC_011989.1 5878 7023 D membrane-bound lytic murein transglycosylase 5878..7023 Agrobacterium vitis S4 7389013 YP_002547982.1 CDS Avi_0011 NC_011989.1 7062 7601 D DNA repair protein 7062..7601 Agrobacterium vitis S4 7389014 YP_002547983.1 CDS Avi_0012 NC_011989.1 7598 7993 D transcriptional regulator 7598..7993 Agrobacterium vitis S4 7389015 YP_002547984.1 CDS gyrB NC_011989.1 8119 10554 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 8119..10554 Agrobacterium vitis S4 7389016 YP_002547985.1 CDS Avi_0014 NC_011989.1 10715 11311 R nitroreductase family protein complement(10715..11311) Agrobacterium vitis S4 7389017 YP_002547986.1 CDS depA NC_011989.1 11732 13027 D intracellular PHB depolymerase 11732..13027 Agrobacterium vitis S4 7389018 YP_002547987.1 CDS Avi_0017 NC_011989.1 13165 13611 D hypothetical protein 13165..13611 Agrobacterium vitis S4 7389019 YP_002547988.1 CDS Avi_0018 NC_011989.1 13722 14486 D hypothetical protein 13722..14486 Agrobacterium vitis S4 7389020 YP_002547989.1 CDS trpF NC_011989.1 14528 15202 D catalyzes the formation of 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate from N-(5-phospho-beta-D-ribosyl)-anthranilate in tryptophan biosynthesis; N-(5'-phosphoribosyl)anthranilate isomerase 14528..15202 Agrobacterium vitis S4 7389021 YP_002547990.1 CDS trpB NC_011989.1 15199 16419 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 15199..16419 Agrobacterium vitis S4 7389022 YP_002547991.1 CDS trpA NC_011989.1 16421 17260 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 16421..17260 Agrobacterium vitis S4 7389023 YP_002547992.1 CDS Avi_0022 NC_011989.1 17395 18315 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 17395..18315 Agrobacterium vitis S4 7389024 YP_002547993.1 CDS folC NC_011989.1 18355 19767 D folylpolyglutamate synthase 18355..19767 Agrobacterium vitis S4 7389025 YP_002547994.1 CDS Avi_0025 NC_011989.1 20263 20913 D hypothetical protein 20263..20913 Agrobacterium vitis S4 7389026 YP_002547995.1 CDS Avi_0027 NC_011989.1 21148 22152 D hypothetical protein 21148..22152 Agrobacterium vitis S4 7389027 YP_002547996.1 CDS trxA NC_011989.1 22379 22699 R thioredoxin complement(22379..22699) Agrobacterium vitis S4 7389028 YP_002547997.1 CDS Avi_0030 NC_011989.1 22899 23855 R hypothetical protein complement(22899..23855) Agrobacterium vitis S4 7389029 YP_002547998.1 CDS hslU NC_011989.1 24029 25336 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(24029..25336) Agrobacterium vitis S4 7389030 YP_002547999.1 CDS hslV NC_011989.1 25374 25934 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(25374..25934) Agrobacterium vitis S4 7389031 YP_002548000.1 CDS hisB NC_011989.1 26129 26725 D catalyzes the dehydration of D-erythro-1-(imidazol-4-yl)glycerol 3-phosphate to 3-(imidazol-4-yl)-2-oxopropyl phosphate in histidine biosynthesis; imidazoleglycerol-phosphate dehydratase 26129..26725 Agrobacterium vitis S4 7389032 YP_002548001.1 CDS hisH NC_011989.1 26753 27403 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 26753..27403 Agrobacterium vitis S4 7389033 YP_002548002.1 CDS hisA NC_011989.1 27428 28162 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 27428..28162 Agrobacterium vitis S4 7389034 YP_002548003.1 CDS hisF NC_011989.1 28176 28970 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 28176..28970 Agrobacterium vitis S4 7389035 YP_002548004.1 CDS hisE NC_011989.1 28983 29297 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 28983..29297 Agrobacterium vitis S4 7389036 YP_002548005.1 CDS panK NC_011989.1 29303 30295 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 29303..30295 Agrobacterium vitis S4 7389037 YP_002548006.1 CDS Avi_0040 NC_011989.1 30362 30940 D hypothetical protein 30362..30940 Agrobacterium vitis S4 7389038 YP_002548007.1 CDS Avi_0041 NC_011989.1 30977 31411 R peptidyl-tRNA hydrolase domain protein complement(30977..31411) Agrobacterium vitis S4 7389039 YP_002548008.1 CDS pckA NC_011989.1 31588 33198 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(31588..33198) Agrobacterium vitis S4 7389040 YP_002548009.1 CDS chvI NC_011989.1 33554 34276 D two component response regulator 33554..34276 Agrobacterium vitis S4 7389041 YP_002548010.1 CDS chvG NC_011989.1 34514 36286 D two-component sensor histidine kinase 34514..36286 Agrobacterium vitis S4 7389042 YP_002548011.1 CDS Avi_0046 NC_011989.1 36283 36741 D hypothetical protein 36283..36741 Agrobacterium vitis S4 7389043 YP_002548012.1 CDS Avi_0047 NC_011989.1 37102 37503 D PTS system IIA component 37102..37503 Agrobacterium vitis S4 7389044 YP_002548013.1 CDS ptsH NC_011989.1 37518 37793 D phosphocarrier protein HPr 37518..37793 Agrobacterium vitis S4 7389045 YP_002548014.1 CDS ahcY NC_011989.1 37838 39367 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 37838..39367 Agrobacterium vitis S4 7389046 YP_002548015.1 CDS Avi_0050 NC_011989.1 39579 42314 D two component sensor kinase 39579..42314 Agrobacterium vitis S4 7389047 YP_002548016.1 CDS Avi_0051 NC_011989.1 42311 43819 D hypothetical protein 42311..43819 Agrobacterium vitis S4 7389048 YP_002548017.1 CDS Avi_0053 NC_011989.1 43973 44686 D nucleotidyltransferase 43973..44686 Agrobacterium vitis S4 7389049 YP_002548018.1 CDS addB NC_011989.1 44683 47871 D double-strand break repair protein AddB 44683..47871 Agrobacterium vitis S4 7389050 YP_002548019.1 CDS uvrD NC_011989.1 47864 51412 D ATP-dependent DNA helicase 47864..51412 Agrobacterium vitis S4 7389051 YP_002548020.1 CDS glcB NC_011989.1 51760 53940 D catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 51760..53940 Agrobacterium vitis S4 7389052 YP_002548021.1 CDS Avi_0061 NC_011989.1 54130 54828 R hypothetical protein complement(54130..54828) Agrobacterium vitis S4 7389053 YP_002548022.1 CDS Avi_0062 NC_011989.1 54930 55490 D hypothetical protein 54930..55490 Agrobacterium vitis S4 7389054 YP_002548023.1 CDS actR NC_011989.1 55510 56085 R two component response regulator complement(55510..56085) Agrobacterium vitis S4 7389055 YP_002548024.1 CDS actS NC_011989.1 56244 57548 R two component sensor kinase complement(56244..57548) Agrobacterium vitis S4 7389056 YP_002548025.1 CDS hrpB NC_011989.1 57585 60047 R DEAD box-like helicase complement(57585..60047) Agrobacterium vitis S4 7389057 YP_002548026.1 CDS arcB NC_011989.1 60130 61086 R catalyzes the formation of L-proline from L-ornithine; ornithine cyclodeaminase complement(60130..61086) Agrobacterium vitis S4 7389058 YP_002548027.1 CDS Avi_0070 NC_011989.1 68353 69735 R MFS permease complement(68353..69735) Agrobacterium vitis S4 7389060 YP_002548028.1 CDS dapA NC_011989.1 70056 71003 R dihydrodipicolinate synthase complement(70056..71003) Agrobacterium vitis S4 7389061 YP_002548029.1 CDS Avi_0072 NC_011989.1 71167 72198 D transcriptional regulator LacI family 71167..72198 Agrobacterium vitis S4 7389062 YP_002548030.1 CDS Avi_0073 NC_011989.1 72244 73248 R hypothetical protein complement(72244..73248) Agrobacterium vitis S4 7389063 YP_002548031.1 CDS idhA NC_011989.1 73476 74465 R myo-inositol 2-dehydrogenase complement(73476..74465) Agrobacterium vitis S4 7389064 YP_002548032.1 CDS Avi_0075 NC_011989.1 74678 75511 D transcriptional regulator RpiR family 74678..75511 Agrobacterium vitis S4 7388838 YP_002548033.1 CDS iolC NC_011989.1 75639 77543 D myo-inositol catabolism IolC protein 75639..77543 Agrobacterium vitis S4 7388259 YP_002548034.1 CDS iolD NC_011989.1 77675 79498 D acetolactate synthase 77675..79498 Agrobacterium vitis S4 7388260 YP_002548035.1 CDS iolE NC_011989.1 79500 80402 D hypothetical protein 79500..80402 Agrobacterium vitis S4 7388261 YP_002548036.1 CDS Avi_0079 NC_011989.1 80511 80717 D hypothetical protein 80511..80717 Agrobacterium vitis S4 7388262 YP_002548037.1 CDS iolB NC_011989.1 80714 81532 D hypothetical protein 80714..81532 Agrobacterium vitis S4 7388263 YP_002548038.1 CDS Avi_0081 NC_011989.1 81529 82008 R hypothetical protein complement(81529..82008) Agrobacterium vitis S4 7388264 YP_002548039.1 CDS Avi_0082 NC_011989.1 82022 82423 R hypothetical protein complement(82022..82423) Agrobacterium vitis S4 7388265 YP_002548040.1 CDS csgA NC_011989.1 82554 83252 D C factor 82554..83252 Agrobacterium vitis S4 7388266 YP_002548041.1 CDS Avi_0084 NC_011989.1 83320 83874 D hypothetical protein 83320..83874 Agrobacterium vitis S4 7388267 YP_002548042.1 CDS idnO NC_011989.1 83874 84644 D gluconate 5-dehydrogenase 83874..84644 Agrobacterium vitis S4 7388268 YP_002548043.1 CDS Avi_0086 NC_011989.1 84714 85928 R cyclopropane-fatty-acyl-phospholipid synthase complement(84714..85928) Agrobacterium vitis S4 7388269 YP_002548044.1 CDS Avi_0087 NC_011989.1 85925 86728 R hypothetical protein complement(85925..86728) Agrobacterium vitis S4 7388270 YP_002548045.1 CDS Avi_0088 NC_011989.1 86725 88032 R amine oxidase flavin-containing complement(86725..88032) Agrobacterium vitis S4 7388271 YP_002548046.1 CDS Avi_0089 NC_011989.1 88139 88897 D RNA polymerase sigma subunit protein 88139..88897 Agrobacterium vitis S4 7388272 YP_002548047.1 CDS Avi_0090 NC_011989.1 88897 89589 D anti sigma factor protein 88897..89589 Agrobacterium vitis S4 7388273 YP_002548048.1 CDS Avi_0091 NC_011989.1 89617 90018 D hypothetical protein 89617..90018 Agrobacterium vitis S4 7388274 YP_002548049.1 CDS glpR NC_011989.1 90102 90872 D transcriptional regulator DeoR family 90102..90872 Agrobacterium vitis S4 7388275 YP_002548050.1 CDS glpD NC_011989.1 90949 92499 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 90949..92499 Agrobacterium vitis S4 7388276 YP_002548051.1 CDS Avi_0095 NC_011989.1 92657 93760 D ABC transporter nucleotide binding/ATPase (sugar) 92657..93760 Agrobacterium vitis S4 7388277 YP_002548052.1 CDS Avi_0096 NC_011989.1 93764 94858 D ABC transporter nucleotide binding/ATPase (sugar) 93764..94858 Agrobacterium vitis S4 7388278 YP_002548053.1 CDS Avi_0097 NC_011989.1 94855 95742 D sugar ABC transporter permease 94855..95742 Agrobacterium vitis S4 7388279 YP_002548054.1 CDS Avi_0098 NC_011989.1 95833 96558 D sugar ABC transporter permease 95833..96558 Agrobacterium vitis S4 7388280 YP_002548055.1 CDS Avi_0099 NC_011989.1 96572 96853 D hypothetical protein 96572..96853 Agrobacterium vitis S4 7388281 YP_002548056.1 CDS Avi_0100 NC_011989.1 96896 98620 D hypothetical protein 96896..98620 Agrobacterium vitis S4 7388282 YP_002548057.1 CDS cycM NC_011989.1 98774 99331 R cytochrome c complement(98774..99331) Agrobacterium vitis S4 7388283 YP_002548058.1 CDS kdsB NC_011989.1 99408 100238 D 3-deoxy-D-manno-octulosonate cytidylyltransferase 99408..100238 Agrobacterium vitis S4 7388284 YP_002548059.1 CDS pheA NC_011989.1 100306 101103 D prephenate dehydratase 100306..101103 Agrobacterium vitis S4 7388285 YP_002548060.1 CDS Avi_0107 NC_011989.1 101152 103122 R beta-glucosidase complement(101152..103122) Agrobacterium vitis S4 7388286 YP_002548061.1 CDS Avi_0108 NC_011989.1 103412 104377 R mutT/nudix family protein complement(103412..104377) Agrobacterium vitis S4 7388287 YP_002548062.1 CDS Avi_0109 NC_011989.1 104374 104817 R hypothetical protein complement(104374..104817) Agrobacterium vitis S4 7388288 YP_002548063.1 CDS dnaX NC_011989.1 105085 106980 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 105085..106980 Agrobacterium vitis S4 7387990 YP_002548064.1 CDS Avi_0111 NC_011989.1 107080 107403 D hypothetical protein 107080..107403 Agrobacterium vitis S4 7388290 YP_002548065.1 CDS Avi_0112 NC_011989.1 107440 107763 R hypothetical protein complement(107440..107763) Agrobacterium vitis S4 7388291 YP_002548066.1 CDS Avi_0113 NC_011989.1 107934 108122 D hypothetical protein 107934..108122 Agrobacterium vitis S4 7388292 YP_002548067.1 CDS Avi_0114 NC_011989.1 108172 108696 R acetyltransferase complement(108172..108696) Agrobacterium vitis S4 7388293 YP_002548068.1 CDS Avi_0115 NC_011989.1 108713 109297 R transcriptional regulatory protein complement(108713..109297) Agrobacterium vitis S4 7388294 YP_002548069.1 CDS ftsZ1 NC_011989.1 109515 110468 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 109515..110468 Agrobacterium vitis S4 7388295 YP_002548070.1 CDS lepA NC_011989.1 110502 112379 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 110502..112379 Agrobacterium vitis S4 7388296 YP_002548071.1 CDS rnd NC_011989.1 112465 113091 R ribonuclease D complement(112465..113091) Agrobacterium vitis S4 7388297 YP_002548072.1 CDS Avi_0122 NC_011989.1 113190 114716 R sulfatase complement(113190..114716) Agrobacterium vitis S4 7388298 YP_002548073.1 CDS Avi_0125 NC_011989.1 114968 115156 R hypothetical protein complement(114968..115156) Agrobacterium vitis S4 7388299 YP_002548074.1 CDS noeK NC_011989.1 115395 116840 D phosphomannomutase 115395..116840 Agrobacterium vitis S4 7388300 YP_002548075.1 CDS Avi_0127 NC_011989.1 117038 117499 D Acyl-Coa thioester hydrolase 117038..117499 Agrobacterium vitis S4 7388301 YP_002548076.1 CDS Avi_0128 NC_011989.1 117612 118559 D permease 117612..118559 Agrobacterium vitis S4 7388302 YP_002548077.1 CDS Avi_0130 NC_011989.1 118608 120830 R hypothetical protein complement(118608..120830) Agrobacterium vitis S4 7388303 YP_002548078.1 CDS Avi_0131 NC_011989.1 121171 122589 D putative nicotinate phosphoribosyltransferase 121171..122589 Agrobacterium vitis S4 7388304 YP_002548079.1 CDS Avi_0132 NC_011989.1 122643 123035 R hypothetical protein complement(122643..123035) Agrobacterium vitis S4 7388305 YP_002548080.1 CDS Avi_0134 NC_011989.1 123358 123717 D hypothetical protein 123358..123717 Agrobacterium vitis S4 7388306 YP_002548081.1 CDS Avi_0136 NC_011989.1 123766 124239 D hypothetical protein 123766..124239 Agrobacterium vitis S4 7388307 YP_002548082.1 CDS ampS NC_011989.1 124437 125687 D aminopeptidase 124437..125687 Agrobacterium vitis S4 7388308 YP_002548083.1 CDS Avi_0138 NC_011989.1 125849 126040 R hypothetical protein complement(125849..126040) Agrobacterium vitis S4 7388309 YP_002548084.1 CDS Avi_0140 NC_011989.1 126263 126529 R hypothetical protein complement(126263..126529) Agrobacterium vitis S4 7388310 YP_002548085.1 CDS cspA NC_011989.1 126916 127140 R cold shock protein complement(126916..127140) Agrobacterium vitis S4 7388311 YP_002548086.1 CDS xseA NC_011989.1 127450 129081 R bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit complement(127450..129081) Agrobacterium vitis S4 7388312 YP_002548087.1 CDS Avi_0147 NC_011989.1 129493 131370 R hypothetical protein complement(129493..131370) Agrobacterium vitis S4 7388313 YP_002548088.1 CDS exoA NC_011989.1 131531 132535 D succinoglycan biosynthesis protein 131531..132535 Agrobacterium vitis S4 7388314 YP_002548089.1 CDS Avi_0149 NC_011989.1 132532 132906 D GtrA family protein 132532..132906 Agrobacterium vitis S4 7388315 YP_002548090.1 CDS Avi_0150 NC_011989.1 132926 133912 R oxidoreductase complement(132926..133912) Agrobacterium vitis S4 7388316 YP_002548091.1 CDS Avi_0151 NC_011989.1 134057 135010 D oxidoreductase 134057..135010 Agrobacterium vitis S4 7388317 YP_002548092.1 CDS Avi_0152 NC_011989.1 135057 135947 R transcriptional regulator complement(135057..135947) Agrobacterium vitis S4 7388318 YP_002548093.1 CDS Avi_0153 NC_011989.1 136050 137051 D aldo-keto reductase 136050..137051 Agrobacterium vitis S4 7388319 YP_002548094.1 CDS Avi_0154 NC_011989.1 137126 137698 R hypothetical protein complement(137126..137698) Agrobacterium vitis S4 7388320 YP_002548095.1 CDS Avi_0155 NC_011989.1 137863 138480 R hypothetical protein complement(137863..138480) Agrobacterium vitis S4 7388321 YP_002548096.1 CDS recR NC_011989.1 138537 139142 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 138537..139142 Agrobacterium vitis S4 7388322 YP_002548097.1 CDS mltB NC_011989.1 139194 140450 D lytic murein transglycosylase 139194..140450 Agrobacterium vitis S4 7388323 YP_002548098.1 CDS Avi_0158 NC_011989.1 140493 143930 R Hemolysin-type calcium-binding protein complement(140493..143930) Agrobacterium vitis S4 7388324 YP_002548099.1 CDS Avi_0160 NC_011989.1 144368 148540 R Hemolysin-type calcium-binding protein complement(144368..148540) Agrobacterium vitis S4 7388325 YP_002548100.1 CDS Avi_0161 NC_011989.1 148858 149907 D hypothetical protein 148858..149907 Agrobacterium vitis S4 7388326 YP_002548101.1 CDS Avi_0162 NC_011989.1 149979 152480 R Hemolysin-type calcium-binding protein complement(149979..152480) Agrobacterium vitis S4 7388327 YP_002548102.1 CDS Avi_0163 NC_011989.1 152564 154192 R MFS permease complement(152564..154192) Agrobacterium vitis S4 7388328 YP_002548103.1 CDS Avi_0164 NC_011989.1 154495 155109 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 154495..155109 Agrobacterium vitis S4 7388329 YP_002548104.1 CDS nusA NC_011989.1 155168 156784 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 155168..156784 Agrobacterium vitis S4 7388330 YP_002548105.1 CDS Avi_0168 NC_011989.1 156784 157479 D hypothetical protein 156784..157479 Agrobacterium vitis S4 7388331 YP_002548106.1 CDS infB NC_011989.1 157583 160363 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 157583..160363 Agrobacterium vitis S4 7388332 YP_002548107.1 CDS rbfA NC_011989.1 160528 160941 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 160528..160941 Agrobacterium vitis S4 7388333 YP_002548108.1 CDS truB NC_011989.1 160946 161875 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 160946..161875 Agrobacterium vitis S4 7388334 YP_002548109.1 CDS rpsO NC_011989.1 162080 162349 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 162080..162349 Agrobacterium vitis S4 7388335 YP_002548110.1 CDS pnpA NC_011989.1 162773 164917 D polynucleotide phosphorylase/polyadenylase 162773..164917 Agrobacterium vitis S4 7388336 YP_002548111.1 CDS rsmC NC_011989.1 165091 166107 D ribosomal RNA small subunit methyltransferase 165091..166107 Agrobacterium vitis S4 7387984 YP_002548112.1 CDS fabI NC_011989.1 166176 166970 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase complement(166176..166970) Agrobacterium vitis S4 7388338 YP_002548113.1 CDS fabB NC_011989.1 166988 168211 R FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(166988..168211) Agrobacterium vitis S4 7388339 YP_002548114.1 CDS fabA NC_011989.1 168246 168761 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-ACP dehydratase complement(168246..168761) Agrobacterium vitis S4 7388340 YP_002548115.1 CDS irr NC_011989.1 169069 169485 D transcriptional regulator Fur family 169069..169485 Agrobacterium vitis S4 7386829 YP_002548116.1 CDS Avi_0184 NC_011989.1 169550 170185 R hypothetical protein complement(169550..170185) Agrobacterium vitis S4 7387511 YP_002548117.1 CDS Avi_0189 NC_011989.1 170468 170989 R hypothetical protein complement(170468..170989) Agrobacterium vitis S4 7387512 YP_002548118.1 CDS Avi_0190 NC_011989.1 171038 172417 R sugar ABC transporter permease complement(171038..172417) Agrobacterium vitis S4 7387513 YP_002548119.1 CDS Avi_0191 NC_011989.1 173084 173470 R hypothetical protein complement(173084..173470) Agrobacterium vitis S4 7387187 YP_002548120.1 CDS cmk NC_011989.1 173741 174394 D Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase 173741..174394 Agrobacterium vitis S4 7387515 YP_002548121.1 CDS rpsA NC_011989.1 174545 176266 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 174545..176266 Agrobacterium vitis S4 7387516 YP_002548122.1 CDS Avi_0196 NC_011989.1 176428 177411 D hypothetical protein 176428..177411 Agrobacterium vitis S4 7387517 YP_002548123.1 CDS Avi_0197 NC_011989.1 177476 177991 R hypothetical protein complement(177476..177991) Agrobacterium vitis S4 7387518 YP_002548124.1 CDS Avi_0199 NC_011989.1 178265 179074 R hypothetical protein complement(178265..179074) Agrobacterium vitis S4 7387519 YP_002548125.1 CDS infC NC_011989.1 179359 179814 D translation initiation factor IF-3 179359..179814 Agrobacterium vitis S4 7387520 YP_002548126.1 CDS Avi_0202 NC_011989.1 181269 181937 D two component response regulator 181269..181937 Agrobacterium vitis S4 7387521 YP_002548127.1 CDS Avi_0203 NC_011989.1 181931 183286 D two component sensor kinase 181931..183286 Agrobacterium vitis S4 7387522 YP_002548128.1 CDS rpmI NC_011989.1 183514 183717 D 50S ribosomal protein L35 183514..183717 Agrobacterium vitis S4 7387523 YP_002548129.1 CDS rplT NC_011989.1 183757 184161 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 183757..184161 Agrobacterium vitis S4 7387524 YP_002548130.1 CDS pheS NC_011989.1 184324 185409 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha 184324..185409 Agrobacterium vitis S4 7387525 YP_002548131.1 CDS pheT NC_011989.1 185825 188248 D catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta 185825..188248 Agrobacterium vitis S4 7387526 YP_002548132.1 CDS Avi_0210 NC_011989.1 188499 188942 R hypothetical protein complement(188499..188942) Agrobacterium vitis S4 7387527 YP_002548133.1 CDS Avi_0211 NC_011989.1 189489 189866 R hypothetical protein complement(189489..189866) Agrobacterium vitis S4 7387994 YP_002548134.1 CDS ctpI NC_011989.1 190237 191217 R component of type IV pilus complement(190237..191217) Agrobacterium vitis S4 7387529 YP_002548135.1 CDS ctpH NC_011989.1 191228 192232 R component of type IV pilus complement(191228..192232) Agrobacterium vitis S4 7387530 YP_002548136.1 CDS ctpG NC_011989.1 192236 193714 R component of type IV pilus complement(192236..193714) Agrobacterium vitis S4 7387531 YP_002548137.1 CDS ctpF NC_011989.1 193764 195050 R component of type IV pilus complement(193764..195050) Agrobacterium vitis S4 7387532 YP_002548138.1 CDS ctpE NC_011989.1 195077 195667 R component of type IV pilus complement(195077..195667) Agrobacterium vitis S4 7387533 YP_002548139.1 CDS ctpD NC_011989.1 195781 197358 R component of type IV pilus complement(195781..197358) Agrobacterium vitis S4 7387534 YP_002548140.1 CDS ctpC NC_011989.1 197355 198164 R component of type IV pilus complement(197355..198164) Agrobacterium vitis S4 7387535 YP_002548141.1 CDS ctpB NC_011989.1 198275 198793 R component of type IV pilus prepilin peptidase complement(198275..198793) Agrobacterium vitis S4 7387536 YP_002548142.1 CDS ctpA NC_011989.1 198997 199182 R component of type 4 pilus pilin subunit protein complement(198997..199182) Agrobacterium vitis S4 7387537 YP_002548143.1 CDS ctpA NC_011989.1 199370 199555 R component of type 4 pilus pilin subunit protein complement(199370..199555) Agrobacterium vitis S4 7387538 YP_002548144.1 CDS pilQ NC_011989.1 199899 200378 D pilus subunit transmembrane protein 199899..200378 Agrobacterium vitis S4 7387539 YP_002548145.1 CDS Avi_0226 NC_011989.1 200605 201228 D hypothetical protein 200605..201228 Agrobacterium vitis S4 7387540 YP_002548146.1 CDS Avi_0228 NC_011989.1 201225 201809 D hypothetical protein 201225..201809 Agrobacterium vitis S4 7387541 YP_002548147.1 CDS deoB NC_011989.1 201958 203178 D catalyzes the transfer of phosphate between the C1 and C5 carbons of pentose; phosphopentomutase 201958..203178 Agrobacterium vitis S4 7387542 YP_002548148.1 CDS add NC_011989.1 203175 204173 D catalyzes the formation of inosine from adenosine; adenosine deaminase 203175..204173 Agrobacterium vitis S4 7387543 YP_002548149.1 CDS upp NC_011989.1 204258 204887 D Catalyzes the formation of uracil and 5-phospho-alpha-D-ribosy 1-diphosphate from UMP and diphosphate; uracil phosphoribosyltransferase 204258..204887 Agrobacterium vitis S4 7387544 YP_002548150.1 CDS Avi_0232 NC_011989.1 204983 205504 D hypothetical protein 204983..205504 Agrobacterium vitis S4 7387545 YP_002548151.1 CDS rhtB NC_011989.1 205644 206273 D RhtB family transporter 205644..206273 Agrobacterium vitis S4 7387546 YP_002548152.1 CDS Avi_0235 NC_011989.1 206429 207064 R catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(206429..207064) Agrobacterium vitis S4 7387547 YP_002548153.1 CDS dapB NC_011989.1 207100 207912 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(207100..207912) Agrobacterium vitis S4 7387548 YP_002548154.1 CDS Avi_0238 NC_011989.1 207998 209788 R ABC transporter ATPase complement(207998..209788) Agrobacterium vitis S4 7387549 YP_002548155.1 CDS glk NC_011989.1 209893 210915 R catalyzes the conversion of ATP and D-glucose to ADP and D-glucose 6-phosphate; glucokinase complement(209893..210915) Agrobacterium vitis S4 7387550 YP_002548156.1 CDS mgsA NC_011989.1 210963 211343 R catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase complement(210963..211343) Agrobacterium vitis S4 7387551 YP_002548157.1 CDS mepA NC_011989.1 211429 212439 R D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase complement(211429..212439) Agrobacterium vitis S4 7387552 YP_002548158.1 CDS Avi_0244 NC_011989.1 212727 214622 D ABC transporter substrate binding protein (peptide) 212727..214622 Agrobacterium vitis S4 7387553 YP_002548159.1 CDS Avi_0245 NC_011989.1 214795 215886 D peptide ABC transporter permease 214795..215886 Agrobacterium vitis S4 7387554 YP_002548160.1 CDS Avi_0246 NC_011989.1 215886 217022 D peptide ABC transporter permease 215886..217022 Agrobacterium vitis S4 7387555 YP_002548161.1 CDS Avi_0247 NC_011989.1 217019 218647 D ABC transporter nucleotide binding/ATPase (peptide) 217019..218647 Agrobacterium vitis S4 7387556 YP_002548162.1 CDS Avi_0248 NC_011989.1 218676 219638 D 2-hydroxyacid dehydrogenase 218676..219638 Agrobacterium vitis S4 7387557 YP_002548163.1 CDS Avi_0249 NC_011989.1 219721 220002 D hypothetical protein 219721..220002 Agrobacterium vitis S4 7387558 YP_002548164.1 CDS pncB NC_011989.1 220183 221487 D catalyzes the formation of nictonate and 5-phospho-alpha-D-ribose 1-diphosphate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 220183..221487 Agrobacterium vitis S4 7387559 YP_002548165.1 CDS Avi_0252 NC_011989.1 221504 221995 R hypothetical protein complement(221504..221995) Agrobacterium vitis S4 7387560 YP_002548166.1 CDS Avi_0253 NC_011989.1 222659 222979 D hypothetical protein 222659..222979 Agrobacterium vitis S4 7387186 YP_002548167.1 CDS Avi_0256 NC_011989.1 223555 224547 D membrane lipoprotein 223555..224547 Agrobacterium vitis S4 7387562 YP_002548168.1 CDS Avi_0258 NC_011989.1 224789 226222 D ABC transporter nucleotide binding/ATPase (sugar/ribonucleotide) 224789..226222 Agrobacterium vitis S4 7387563 YP_002548169.1 CDS Avi_0259 NC_011989.1 226230 227360 D sugar ABC transporter permease 226230..227360 Agrobacterium vitis S4 7387564 YP_002548170.1 CDS Avi_0260 NC_011989.1 227373 228344 D sugar ABC transporter permease 227373..228344 Agrobacterium vitis S4 7387565 YP_002548171.1 CDS cdd NC_011989.1 228346 228738 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 228346..228738 Agrobacterium vitis S4 7387566 YP_002548172.1 CDS Avi_0263 NC_011989.1 228735 229544 D catalyzes the formation of a purine and ribose phosphate from a purine nucleoside; in E. coli this enzyme functions in xanthosine degradation; purine nucleoside phosphorylase 228735..229544 Agrobacterium vitis S4 7387567 YP_002548173.1 CDS deoC NC_011989.1 229522 230310 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 229522..230310 Agrobacterium vitis S4 7387568 YP_002548174.1 CDS deoA NC_011989.1 230312 231631 D thymidine phosphorylase 230312..231631 Agrobacterium vitis S4 7387569 YP_002548175.1 CDS phnF NC_011989.1 231615 232352 R phosphonates metabolism transcriptional regulator PhnF complement(231615..232352) Agrobacterium vitis S4 7387570 YP_002548176.1 CDS phnG NC_011989.1 232452 232919 D hypothetical protein 232452..232919 Agrobacterium vitis S4 7387571 YP_002548177.1 CDS phnH NC_011989.1 232979 233524 D hypothetical protein 232979..233524 Agrobacterium vitis S4 7387572 YP_002548178.1 CDS phnI NC_011989.1 233525 234631 D hypothetical protein 233525..234631 Agrobacterium vitis S4 7387573 YP_002548179.1 CDS phnJ NC_011989.1 234774 235682 D hypothetical protein 234774..235682 Agrobacterium vitis S4 7387574 YP_002548180.1 CDS phnK NC_011989.1 235679 236455 D phosphonate C-P lyase system protein PhnK 235679..236455 Agrobacterium vitis S4 7387575 YP_002548181.1 CDS phnL NC_011989.1 236468 237196 D phosphonate C-P lyase system protein PhnL 236468..237196 Agrobacterium vitis S4 7387576 YP_002548182.1 CDS Avi_0277 NC_011989.1 237272 237895 D acetyltransferase 237272..237895 Agrobacterium vitis S4 7387577 YP_002548183.1 CDS phnC NC_011989.1 238012 238851 D phosphonate ABC transporter ATP-binding protein 238012..238851 Agrobacterium vitis S4 7387578 YP_002548184.1 CDS phnD NC_011989.1 239008 239916 D ABC transporter substrate binding protein (phosphonate) 239008..239916 Agrobacterium vitis S4 7387579 YP_002548185.1 CDS phnE NC_011989.1 239993 240955 D phosphonate ABC transporter permease 239993..240955 Agrobacterium vitis S4 7387580 YP_002548186.1 CDS phnE NC_011989.1 240965 242464 D phosphonate ABC transporter permease 240965..242464 Agrobacterium vitis S4 7387581 YP_002548187.1 CDS Avi_0286 NC_011989.1 242577 243278 D hypothetical protein 242577..243278 Agrobacterium vitis S4 7387582 YP_002548188.1 CDS phnM NC_011989.1 243278 244429 D phosphonate metabolism protein PhnM 243278..244429 Agrobacterium vitis S4 7387583 YP_002548189.1 CDS gmk NC_011989.1 244489 245040 D guanylate kinase 244489..245040 Agrobacterium vitis S4 7387584 YP_002548190.1 CDS rhtB NC_011989.1 245245 245874 D RhtB family transporter 245245..245874 Agrobacterium vitis S4 7387585 YP_002548191.1 CDS Avi_0290 NC_011989.1 245880 246668 R hypothetical protein complement(245880..246668) Agrobacterium vitis S4 7387586 YP_002548192.1 CDS Avi_0292 NC_011989.1 247054 248442 D leucine aminopeptidase 247054..248442 Agrobacterium vitis S4 7387587 YP_002548193.1 CDS Avi_0293 NC_011989.1 249043 249738 D hypothetical protein 249043..249738 Agrobacterium vitis S4 7387588 YP_002548194.1 CDS Avi_0295 NC_011989.1 250049 251299 D cytochrome b561 250049..251299 Agrobacterium vitis S4 7387589 YP_002548195.1 CDS Avi_0296 NC_011989.1 251390 251740 D hypothetical protein 251390..251740 Agrobacterium vitis S4 7387590 YP_002548196.1 CDS Avi_0297 NC_011989.1 251743 252603 D hypothetical protein 251743..252603 Agrobacterium vitis S4 7387591 YP_002548197.1 CDS polA NC_011989.1 252729 255707 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(252729..255707) Agrobacterium vitis S4 7387592 YP_002548198.1 CDS Avi_0300 NC_011989.1 256094 256543 D transcriptional regulator MarR family 256094..256543 Agrobacterium vitis S4 7388671 YP_002548199.1 CDS dapE NC_011989.1 256616 258004 D hypothetical protein 256616..258004 Agrobacterium vitis S4 7387758 YP_002548200.1 CDS Avi_0303 NC_011989.1 258465 258923 D hypothetical protein 258465..258923 Agrobacterium vitis S4 7387759 YP_002548201.1 CDS Avi_0304 NC_011989.1 259052 259375 R hypothetical protein complement(259052..259375) Agrobacterium vitis S4 7387760 YP_002548202.1 CDS pbpC NC_011989.1 259590 262091 D penicillin-binding protein 259590..262091 Agrobacterium vitis S4 7387761 YP_002548203.1 CDS dnaK NC_011989.1 262413 264329 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 262413..264329 Agrobacterium vitis S4 7387762 YP_002548204.1 CDS Avi_0307 NC_011989.1 264329 264790 D hypothetical protein 264329..264790 Agrobacterium vitis S4 7387763 YP_002548205.1 CDS dnaJ NC_011989.1 264795 265937 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 264795..265937 Agrobacterium vitis S4 7387764 YP_002548206.1 CDS Avi_0309 NC_011989.1 265979 266203 R hypothetical protein complement(265979..266203) Agrobacterium vitis S4 7387765 YP_002548207.1 CDS recF NC_011989.1 266366 267490 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 266366..267490 Agrobacterium vitis S4 7387766 YP_002548208.1 CDS moeB NC_011989.1 267526 268296 D ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 267526..268296 Agrobacterium vitis S4 7387767 YP_002548209.1 CDS Avi_0313 NC_011989.1 268339 268815 D hypothetical protein 268339..268815 Agrobacterium vitis S4 7387768 YP_002548210.1 CDS Avi_0314 NC_011989.1 268894 269898 R D-isomer specific 2-hydroxyacid dehydrogenases family protein complement(268894..269898) Agrobacterium vitis S4 7387769 YP_002548211.1 CDS Avi_0315 NC_011989.1 270187 270726 D hypothetical protein 270187..270726 Agrobacterium vitis S4 7387770 YP_002548212.1 CDS Avi_0316 NC_011989.1 270770 271762 R pfkB family carbohydrate kinase complement(270770..271762) Agrobacterium vitis S4 7387771 YP_002548213.1 CDS Avi_0317 NC_011989.1 271874 273319 R GGDEF family protein complement(271874..273319) Agrobacterium vitis S4 7387772 YP_002548214.1 CDS Avi_0319 NC_011989.1 273751 276177 R hypothetical protein complement(273751..276177) Agrobacterium vitis S4 7387773 YP_002548215.1 CDS Avi_0320 NC_011989.1 276197 277768 R NADH Dehydrogenase Protein complement(276197..277768) Agrobacterium vitis S4 7387774 YP_002548216.1 CDS oxyR NC_011989.1 277878 278762 D LysR family transcriptional regulator 277878..278762 Agrobacterium vitis S4 7387775 YP_002548217.1 CDS Avi_0323 NC_011989.1 278802 279959 R hypothetical protein complement(278802..279959) Agrobacterium vitis S4 7387776 YP_002548218.1 CDS Avi_0326 NC_011989.1 280369 281022 D Transcriptional regulator protein 280369..281022 Agrobacterium vitis S4 7387777 YP_002548219.1 CDS guaA NC_011989.1 281180 282742 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(281180..282742) Agrobacterium vitis S4 7387778 YP_002548220.1 CDS pfs NC_011989.1 282827 283465 R Enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(282827..283465) Agrobacterium vitis S4 7387779 YP_002548221.1 CDS Avi_0329 NC_011989.1 283462 283899 R hypothetical protein complement(283462..283899) Agrobacterium vitis S4 7387780 YP_002548222.1 CDS tspO NC_011989.1 284023 284487 R tryptophan-rich sensory protein complement(284023..284487) Agrobacterium vitis S4 7387781 YP_002548223.1 CDS Avi_0332 NC_011989.1 284536 285609 R hypothetical protein complement(284536..285609) Agrobacterium vitis S4 7387782 YP_002548224.1 CDS Avi_0333 NC_011989.1 285615 286739 R hypothetical protein complement(285615..286739) Agrobacterium vitis S4 7387783 YP_002548225.1 CDS Avi_0334 NC_011989.1 286739 288325 R hypothetical protein complement(286739..288325) Agrobacterium vitis S4 7387784 YP_002548226.1 CDS Avi_0335 NC_011989.1 288343 289620 R hypothetical protein complement(288343..289620) Agrobacterium vitis S4 7387785 YP_002548227.1 CDS sun NC_011989.1 289738 291024 R Sun protein complement(289738..291024) Agrobacterium vitis S4 7387786 YP_002548228.1 CDS Avi_0337 NC_011989.1 291334 291768 R rare lipoprotein A complement(291334..291768) Agrobacterium vitis S4 7387787 YP_002548229.1 CDS Avi_0339 NC_011989.1 292043 292939 R hypothetical protein complement(292043..292939) Agrobacterium vitis S4 7387788 YP_002548230.1 CDS Avi_0340 NC_011989.1 292912 294084 R iron-sulfur cluster binding protein complement(292912..294084) Agrobacterium vitis S4 7387789 YP_002548231.1 CDS Avi_0341 NC_011989.1 294096 294788 R glutathione S-transferase complement(294096..294788) Agrobacterium vitis S4 7387790 YP_002548232.1 CDS bacA NC_011989.1 294962 295768 D BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; UDP pyrophosphate phosphatase 294962..295768 Agrobacterium vitis S4 7387791 YP_002548233.1 CDS Avi_0343 NC_011989.1 296504 297481 R NADH-ubiquinone oxidoreductase complement(296504..297481) Agrobacterium vitis S4 7387792 YP_002548234.1 CDS Avi_0345 NC_011989.1 297616 297906 R hypothetical protein complement(297616..297906) Agrobacterium vitis S4 7387793 YP_002548235.1 CDS Avi_0346 NC_011989.1 298159 299310 D hypothetical protein 298159..299310 Agrobacterium vitis S4 7387794 YP_002548236.1 CDS pyrF NC_011989.1 299330 300025 R type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(299330..300025) Agrobacterium vitis S4 7387795 YP_002548237.1 CDS Avi_0348 NC_011989.1 300025 300612 R hypothetical protein complement(300025..300612) Agrobacterium vitis S4 7387796 YP_002548238.1 CDS Avi_0349 NC_011989.1 300626 301219 R methyltransferase complement(300626..301219) Agrobacterium vitis S4 7387797 YP_002548239.1 CDS dnaN NC_011989.1 301462 302700 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(301462..302700) Agrobacterium vitis S4 7387798 YP_002548240.1 CDS Avi_0352 NC_011989.1 302880 303800 D tetrapyrrole methylase 302880..303800 Agrobacterium vitis S4 7387799 YP_002548241.1 CDS Avi_0353 NC_011989.1 303797 304183 D hypothetical protein 303797..304183 Agrobacterium vitis S4 7387800 YP_002548242.1 CDS ugpA NC_011989.1 304331 305629 D ABC transporter substrate binding protein (sn-glycerol 3-phosphate) 304331..305629 Agrobacterium vitis S4 7387801 YP_002548243.1 CDS ugpA NC_011989.1 305705 306586 D sn-glycerol-3-phosphate ABC transporter permease 305705..306586 Agrobacterium vitis S4 7387802 YP_002548244.1 CDS ugpE NC_011989.1 306597 307439 D sn-glycerol-3-phosphate ABC transporter permease 306597..307439 Agrobacterium vitis S4 7387803 YP_002548245.1 CDS ugpC NC_011989.1 307451 308557 D ABC transporter nucleotide binding/ATPase (sn-Glycerol-3-phosphate) 307451..308557 Agrobacterium vitis S4 7387804 YP_002548246.1 CDS Avi_0360 NC_011989.1 308709 309200 D hypothetical protein 308709..309200 Agrobacterium vitis S4 7387805 YP_002548247.1 CDS gshB NC_011989.1 309287 310234 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 309287..310234 Agrobacterium vitis S4 7387806 YP_002548248.1 CDS Avi_0363 NC_011989.1 310683 312215 D hypothetical protein 310683..312215 Agrobacterium vitis S4 7387807 YP_002548249.1 CDS cysK NC_011989.1 312499 313467 R cysteine synthase complement(312499..313467) Agrobacterium vitis S4 7387808 YP_002548250.1 CDS rhtB NC_011989.1 313603 314220 R RhtB family transporter complement(313603..314220) Agrobacterium vitis S4 7387809 YP_002548251.1 CDS rhtB NC_011989.1 314351 314983 D RhtB family transporter 314351..314983 Agrobacterium vitis S4 7387810 YP_002548252.1 CDS Avi_0367 NC_011989.1 314986 315876 R acetyltransferase complement(314986..315876) Agrobacterium vitis S4 7387811 YP_002548253.1 CDS dut NC_011989.1 315885 316349 R deoxyuridine 5primetriphosphate nucleotidohydrolase complement(315885..316349) Agrobacterium vitis S4 7387812 YP_002548254.1 CDS prfC NC_011989.1 316434 318017 D peptide chain release factor 3 316434..318017 Agrobacterium vitis S4 7387813 YP_002548255.1 CDS Avi_0370 NC_011989.1 318083 319486 R OtsA trehalose-6-phosphate synthase complement(318083..319486) Agrobacterium vitis S4 7387814 YP_002548256.1 CDS Avi_0371 NC_011989.1 319516 320316 R Trehalose-6-phosphatase complement(319516..320316) Agrobacterium vitis S4 7387815 YP_002548257.1 CDS thiD NC_011989.1 320529 321386 D phosphomethylpyrimidine kinase 320529..321386 Agrobacterium vitis S4 7387816 YP_002548258.1 CDS Avi_0373 NC_011989.1 321398 321802 R hypothetical protein complement(321398..321802) Agrobacterium vitis S4 7387817 YP_002548259.1 CDS Avi_0375 NC_011989.1 321955 322530 R tyrosine/serine protein phosphatase complement(321955..322530) Agrobacterium vitis S4 7387818 YP_002548260.1 CDS Avi_0377 NC_011989.1 322649 323560 R pirin protein complement(322649..323560) Agrobacterium vitis S4 7387819 YP_002548261.1 CDS Avi_0378 NC_011989.1 323837 324652 D glutamine amidotransferase 323837..324652 Agrobacterium vitis S4 7387820 YP_002548262.1 CDS Avi_0380 NC_011989.1 324790 325719 R LysR family transcriptional regulator complement(324790..325719) Agrobacterium vitis S4 7387821 YP_002548263.1 CDS chrA NC_011989.1 325810 326409 D chromate transport protein 325810..326409 Agrobacterium vitis S4 7387822 YP_002548264.1 CDS chrA NC_011989.1 326406 326927 D chromate transport protein 326406..326927 Agrobacterium vitis S4 7387823 YP_002548265.1 CDS coaBC NC_011989.1 326924 328141 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(326924..328141) Agrobacterium vitis S4 7387824 YP_002548266.1 CDS fsrR NC_011989.1 328236 329270 R two component sensor kinase complement(328236..329270) Agrobacterium vitis S4 7387825 YP_002548267.1 CDS Avi_0385 NC_011989.1 329286 329723 R two component response regulator complement(329286..329723) Agrobacterium vitis S4 7387826 YP_002548268.1 CDS Avi_0386 NC_011989.1 329726 331213 R two component sensor kinase complement(329726..331213) Agrobacterium vitis S4 7387827 YP_002548269.1 CDS ubiB NC_011989.1 331220 332803 R 2-polyprenylphenol 6-hydroxylase complement(331220..332803) Agrobacterium vitis S4 7387828 YP_002548270.1 CDS ubiE NC_011989.1 332845 333621 R Catalyzes the carbon methylation reaction in the biosynthesis of ubiquinone; ubiquinone/menaquinone biosynthesis methyltransferase complement(332845..333621) Agrobacterium vitis S4 7387829 YP_002548271.1 CDS mutM NC_011989.1 333812 334705 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 333812..334705 Agrobacterium vitis S4 7387830 YP_002548272.1 CDS rpsT NC_011989.1 334931 335197 D binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 334931..335197 Agrobacterium vitis S4 7387831 YP_002548273.1 CDS dnaA NC_011989.1 336131 337705 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 336131..337705 Agrobacterium vitis S4 7387832 YP_002548274.1 CDS Avi_0392 NC_011989.1 337914 338819 D ABC transporter permease 337914..338819 Agrobacterium vitis S4 7387833 YP_002548275.1 CDS Avi_0393 NC_011989.1 338839 339579 R methyltransferase complement(338839..339579) Agrobacterium vitis S4 7387834 YP_002548276.1 CDS hemN NC_011989.1 339620 340801 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(339620..340801) Agrobacterium vitis S4 7387835 YP_002548277.1 CDS rdgB NC_011989.1 340808 341452 R HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase complement(340808..341452) Agrobacterium vitis S4 7387836 YP_002548278.1 CDS Avi_0396 NC_011989.1 341462 341878 R lactoylglutathione lyase complement(341462..341878) Agrobacterium vitis S4 7387837 YP_002548279.1 CDS rph NC_011989.1 341892 342611 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(341892..342611) Agrobacterium vitis S4 7387838 YP_002548280.1 CDS hrcA NC_011989.1 342899 343981 D Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor 342899..343981 Agrobacterium vitis S4 7387839 YP_002548281.1 CDS grpE NC_011989.1 344081 344695 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 344081..344695 Agrobacterium vitis S4 7387840 YP_002548282.1 CDS ptsN NC_011989.1 344845 345309 R PTS IIA-like nitrogen-regulatory protein PtsN complement(344845..345309) Agrobacterium vitis S4 7388423 YP_002548283.1 CDS Avi_0402 NC_011989.1 345382 345948 R sigma-54 modulation protein complement(345382..345948) Agrobacterium vitis S4 7388424 YP_002548284.1 CDS rpoN NC_011989.1 346283 347731 R RNA polymerase sigma-54 factor complement(346283..347731) Agrobacterium vitis S4 7388425 YP_002548285.1 CDS Avi_0405 NC_011989.1 348081 348887 R ABC transporter ATPase complement(348081..348887) Agrobacterium vitis S4 7388426 YP_002548286.1 CDS yhbN NC_011989.1 348902 349465 R cell envelope biogenesis protein YhbN complement(348902..349465) Agrobacterium vitis S4 7388427 YP_002548287.1 CDS Avi_0408 NC_011989.1 349475 350140 R hypothetical protein complement(349475..350140) Agrobacterium vitis S4 7388428 YP_002548288.1 CDS ihfB NC_011989.1 350609 350920 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit beta 350609..350920 Agrobacterium vitis S4 7388429 YP_002548289.1 CDS Avi_0411 NC_011989.1 351154 351504 D hypothetical protein 351154..351504 Agrobacterium vitis S4 7388430 YP_002548290.1 CDS Avi_0413 NC_011989.1 351808 353025 D SAM dependent methyltransferase 351808..353025 Agrobacterium vitis S4 7388431 YP_002548291.1 CDS trmH NC_011989.1 353022 353906 D rRNA methylase 353022..353906 Agrobacterium vitis S4 7388432 YP_002548292.1 CDS lspA NC_011989.1 353903 354394 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 353903..354394 Agrobacterium vitis S4 7388433 YP_002548293.1 CDS barA NC_011989.1 354824 356458 D two component sensor kinase/response regulator hybrid 354824..356458 Agrobacterium vitis S4 7388434 YP_002548294.1 CDS Avi_0418 NC_011989.1 356612 357487 D hypothetical protein 356612..357487 Agrobacterium vitis S4 7388435 YP_002548295.1 CDS Avi_0421 NC_011989.1 357534 357869 R hypothetical protein complement(357534..357869) Agrobacterium vitis S4 7388436 YP_002548296.1 CDS Avi_0422 NC_011989.1 357905 358849 D LysR family transcriptional regulator 357905..358849 Agrobacterium vitis S4 7388437 YP_002548297.1 CDS mutS NC_011989.1 359072 361723 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 359072..361723 Agrobacterium vitis S4 7388438 YP_002548298.1 CDS glnD NC_011989.1 361892 364717 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 361892..364717 Agrobacterium vitis S4 7388439 YP_002548299.1 CDS mviN NC_011989.1 364719 366317 D integral membrane protein MviN 364719..366317 Agrobacterium vitis S4 7388440 YP_002548300.1 CDS Avi_0426 NC_011989.1 366304 366708 D hypothetical protein 366304..366708 Agrobacterium vitis S4 7388441 YP_002548301.1 CDS trpS NC_011989.1 366815 367879 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 366815..367879 Agrobacterium vitis S4 7388442 YP_002548302.1 CDS Avi_0429 NC_011989.1 367969 368460 D Universal stress protein 367969..368460 Agrobacterium vitis S4 7388443 YP_002548303.1 CDS Avi_0430 NC_011989.1 368624 369184 D hypothetical protein 368624..369184 Agrobacterium vitis S4 7388444 YP_002548304.1 CDS Avi_0432 NC_011989.1 369264 369953 D hypothetical protein 369264..369953 Agrobacterium vitis S4 7388445 YP_002548305.1 CDS Avi_0433 NC_011989.1 370126 370623 D acetyltransferase 370126..370623 Agrobacterium vitis S4 7388446 YP_002548306.1 CDS fur NC_011989.1 370682 371089 D ferric uptake regulator 370682..371089 Agrobacterium vitis S4 7388447 YP_002548307.1 CDS plsC NC_011989.1 371121 371918 D 1-acyl-sn-glycerol-3-phosphate acyltransferase 371121..371918 Agrobacterium vitis S4 7388448 YP_002548308.1 CDS miaB NC_011989.1 372009 373442 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 372009..373442 Agrobacterium vitis S4 7388449 YP_002548309.1 CDS phoH NC_011989.1 373484 374557 D phosphate starvation inducible protein 373484..374557 Agrobacterium vitis S4 7388450 YP_002548310.1 CDS Avi_0440 NC_011989.1 374594 375097 D hypothetical protein 374594..375097 Agrobacterium vitis S4 7388451 YP_002548311.1 CDS Avi_0441 NC_011989.1 375110 376147 D hemolysin 375110..376147 Agrobacterium vitis S4 7388452 YP_002548312.1 CDS lnt NC_011989.1 376377 377963 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 376377..377963 Agrobacterium vitis S4 7388453 YP_002548313.1 CDS Avi_0443 NC_011989.1 378110 378532 D transcriptional regulator 378110..378532 Agrobacterium vitis S4 7388454 YP_002548314.1 CDS metK NC_011989.1 378706 379944 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 378706..379944 Agrobacterium vitis S4 7388455 YP_002548315.1 CDS trmB NC_011989.1 379950 380648 D tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase 379950..380648 Agrobacterium vitis S4 7388456 YP_002548316.1 CDS Avi_0446 NC_011989.1 380878 381135 R hypothetical protein complement(380878..381135) Agrobacterium vitis S4 7388457 YP_002548317.1 CDS hspH NC_011989.1 381279 381707 R small heat shock protein complement(381279..381707) Agrobacterium vitis S4 7388458 YP_002548318.1 CDS iunH NC_011989.1 381919 382863 D inosine-uridine preferring nucleoside hydrolase 381919..382863 Agrobacterium vitis S4 7388459 YP_002548319.1 CDS Avi_0449 NC_011989.1 382946 383698 D hydrolase 382946..383698 Agrobacterium vitis S4 7388460 YP_002548320.1 CDS Avi_0450 NC_011989.1 383909 384709 D hypothetical protein 383909..384709 Agrobacterium vitis S4 7388461 YP_002548321.1 CDS mcpC NC_011989.1 384842 386710 R methyl-accepting chemotaxis protein complement(384842..386710) Agrobacterium vitis S4 7388462 YP_002548322.1 CDS Avi_0453 NC_011989.1 387323 388747 R two component sensor kinase complement(387323..388747) Agrobacterium vitis S4 7387185 YP_002548323.1 CDS rnpA NC_011989.1 389401 389790 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 389401..389790 Agrobacterium vitis S4 7388464 YP_002548324.1 CDS Avi_0455 NC_011989.1 389787 391649 D functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC 389787..391649 Agrobacterium vitis S4 7388465 YP_002548325.1 CDS engB NC_011989.1 391736 392395 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 391736..392395 Agrobacterium vitis S4 7388466 YP_002548326.1 CDS Avi_0459 NC_011989.1 392587 393144 R hypothetical protein complement(392587..393144) Agrobacterium vitis S4 7388467 YP_002548327.1 CDS Avi_0461 NC_011989.1 393399 394121 R hypothetical protein complement(393399..394121) Agrobacterium vitis S4 7388468 YP_002548328.1 CDS sigK NC_011989.1 394118 394699 R sigma factor complement(394118..394699) Agrobacterium vitis S4 7388469 YP_002548329.1 CDS argB NC_011989.1 394801 395688 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 394801..395688 Agrobacterium vitis S4 7388470 YP_002548330.1 CDS rbsK NC_011989.1 395746 396645 R ribokinase complement(395746..396645) Agrobacterium vitis S4 7388471 YP_002548331.1 CDS Avi_0466 NC_011989.1 396732 397970 R hypothetical protein complement(396732..397970) Agrobacterium vitis S4 7388472 YP_002548332.1 CDS flgE NC_011989.1 398422 399657 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 398422..399657 Agrobacterium vitis S4 7388473 YP_002548333.1 CDS Avi_0471 NC_011989.1 399907 400785 R hypothetical protein complement(399907..400785) Agrobacterium vitis S4 7388474 YP_002548334.1 CDS dapD NC_011989.1 401052 401909 D 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 401052..401909 Agrobacterium vitis S4 7388475 YP_002548335.1 CDS dapE NC_011989.1 402014 403228 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 402014..403228 Agrobacterium vitis S4 7388476 YP_002548336.1 CDS Avi_0475 NC_011989.1 403215 403811 D hypothetical protein 403215..403811 Agrobacterium vitis S4 7388477 YP_002548337.1 CDS Avi_0476 NC_011989.1 403945 404541 D Disulfide bonded thioredoxin protein 403945..404541 Agrobacterium vitis S4 7388478 YP_002548338.1 CDS Avi_0477 NC_011989.1 404706 405830 D hydroxypyruvate reductase 404706..405830 Agrobacterium vitis S4 7388479 YP_002548339.1 CDS hslO NC_011989.1 405842 406717 R chaperonin heat shock protein 33 complement(405842..406717) Agrobacterium vitis S4 7388480 YP_002548340.1 CDS argF NC_011989.1 407123 408040 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(407123..408040) Agrobacterium vitis S4 7388481 YP_002548341.1 CDS argD NC_011989.1 408056 409264 R DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase complement(408056..409264) Agrobacterium vitis S4 7388482 YP_002548342.1 CDS Avi_0482 NC_011989.1 409315 409434 R hypothetical protein complement(409315..409434) Agrobacterium vitis S4 7388483 YP_002548343.1 CDS Avi_0484 NC_011989.1 409694 410245 D hypothetical protein 409694..410245 Agrobacterium vitis S4 7388484 YP_002548344.1 CDS phoB NC_011989.1 410350 411033 R phosphate regulon transcriptional regulatory protein PhoB complement(410350..411033) Agrobacterium vitis S4 7388485 YP_002548345.1 CDS phoU NC_011989.1 411394 412101 R phosphate transport system regulatory protein PhoU complement(411394..412101) Agrobacterium vitis S4 7388486 YP_002548346.1 CDS pstB NC_011989.1 412145 412960 R ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein complement(412145..412960) Agrobacterium vitis S4 7388487 YP_002548347.1 CDS pstA NC_011989.1 413059 414396 R phosphate ABC transporter permease complement(413059..414396) Agrobacterium vitis S4 7388488 YP_002548348.1 CDS pstC NC_011989.1 414393 415880 R phosphate ABC transporter permease complement(414393..415880) Agrobacterium vitis S4 7388489 YP_002548349.1 CDS Avi_0495 NC_011989.1 416008 417033 R ABC transporter substrate binding protein (phosphate) complement(416008..417033) Agrobacterium vitis S4 7388490 YP_002548350.1 CDS phoR NC_011989.1 417227 418486 R phosphate regulon sensor kinase PhoR complement(417227..418486) Agrobacterium vitis S4 7388491 YP_002548351.1 CDS Avi_0497 NC_011989.1 418697 419581 D hypothetical protein 418697..419581 Agrobacterium vitis S4 7388492 YP_002548352.1 CDS Avi_0499 NC_011989.1 419688 420977 R hypothetical protein complement(419688..420977) Agrobacterium vitis S4 7388493 YP_002548353.1 CDS Avi_0500 NC_011989.1 421269 422234 D hypothetical protein 421269..422234 Agrobacterium vitis S4 7388494 YP_002548354.1 CDS Avi_0501 NC_011989.1 422779 423891 D ABC transporter nucleotide binding/ATPase (proline/glycine/betaine) 422779..423891 Agrobacterium vitis S4 7387995 YP_002548355.1 CDS Avi_0502 NC_011989.1 423888 424538 D glycine/betaine ABC transporter permease 423888..424538 Agrobacterium vitis S4 7388496 YP_002548356.1 CDS Avi_0503 NC_011989.1 424535 425212 D ABC transporter 424535..425212 Agrobacterium vitis S4 7388497 YP_002548357.1 CDS Avi_0504 NC_011989.1 425276 426190 D ABC transporter substrate binding protein (proline/glycine/betaine) 425276..426190 Agrobacterium vitis S4 7388498 YP_002548358.1 CDS hutC NC_011989.1 426190 427095 D histidine utilization repressor 426190..427095 Agrobacterium vitis S4 7388499 YP_002548359.1 CDS hutH NC_011989.1 427224 428711 D histidine ammonia-lyase 427224..428711 Agrobacterium vitis S4 7388500 YP_002548360.1 CDS Avi_0507 NC_011989.1 428941 429258 D hypothetical protein 428941..429258 Agrobacterium vitis S4 7388501 YP_002548361.1 CDS Avi_0508 NC_011989.1 429371 430603 R aminotransferase complement(429371..430603) Agrobacterium vitis S4 7388502 YP_002548362.1 CDS Avi_0509 NC_011989.1 430606 431892 R ABC transporter permease complement(430606..431892) Agrobacterium vitis S4 7388503 YP_002548363.1 CDS Avi_0510 NC_011989.1 431889 432407 R ABC transporter permease complement(431889..432407) Agrobacterium vitis S4 7388504 YP_002548364.1 CDS Avi_0511 NC_011989.1 432418 433413 R C4-dicarboxylate-binding protein complement(432418..433413) Agrobacterium vitis S4 7388921 YP_002548365.1 CDS Avi_0512 NC_011989.1 433595 434458 D LysR family transcriptional regulator 433595..434458 Agrobacterium vitis S4 7388924 YP_002548366.1 CDS Avi_0513 NC_011989.1 434492 435784 D MFS permease 434492..435784 Agrobacterium vitis S4 7388925 YP_002548367.1 CDS Avi_0514 NC_011989.1 435922 436392 D hypothetical protein 435922..436392 Agrobacterium vitis S4 7388926 YP_002548368.1 CDS Avi_0516 NC_011989.1 436775 438265 D coenzyme A transferase 436775..438265 Agrobacterium vitis S4 7388927 YP_002548369.1 CDS Avi_0517 NC_011989.1 438328 439734 D hypothetical protein 438328..439734 Agrobacterium vitis S4 7388928 YP_002548370.1 CDS Avi_0518 NC_011989.1 439842 440885 D hypothetical protein 439842..440885 Agrobacterium vitis S4 7388929 YP_002548371.1 CDS Avi_0519 NC_011989.1 441222 441962 D Fnr-like transcriptional activator 441222..441962 Agrobacterium vitis S4 7388930 YP_002548372.1 CDS pleD NC_011989.1 442287 442688 D two component response regulator 442287..442688 Agrobacterium vitis S4 7388931 YP_002548373.1 CDS Avi_0521 NC_011989.1 442685 443179 D hypothetical protein 442685..443179 Agrobacterium vitis S4 7388932 YP_002548374.1 CDS Avi_0522 NC_011989.1 443179 445434 D two component sensor kinase/response regulator hybrid 443179..445434 Agrobacterium vitis S4 7388933 YP_002548375.1 CDS Avi_0523 NC_011989.1 445552 446631 D Response regulator protein 445552..446631 Agrobacterium vitis S4 7388934 YP_002548376.1 CDS pyrC NC_011989.1 446740 447792 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 446740..447792 Agrobacterium vitis S4 7388935 YP_002548377.1 CDS Avi_0525 NC_011989.1 448005 449180 D GGDEF family protein 448005..449180 Agrobacterium vitis S4 7388936 YP_002548378.1 CDS pyrE NC_011989.1 449446 450138 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 449446..450138 Agrobacterium vitis S4 7388937 YP_002548379.1 CDS scrK NC_011989.1 450237 451163 D fructokinase 450237..451163 Agrobacterium vitis S4 7388938 YP_002548380.1 CDS Avi_0533 NC_011989.1 451216 451608 R hypothetical protein complement(451216..451608) Agrobacterium vitis S4 7388939 YP_002548381.1 CDS pgi NC_011989.1 451611 453236 R functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase complement(451611..453236) Agrobacterium vitis S4 7388940 YP_002548382.1 CDS fadD NC_011989.1 453416 455116 R activates fatty acids by binding to coenzyme A; Long-chain-fatty-acid--CoA ligase complement(453416..455116) Agrobacterium vitis S4 7388941 YP_002548383.1 CDS Avi_0536 NC_011989.1 455424 455705 D hypothetical protein 455424..455705 Agrobacterium vitis S4 7388942 YP_002548384.1 CDS glgX NC_011989.1 455806 457893 R glycogen debranching enzyme GlgX complement(455806..457893) Agrobacterium vitis S4 7388943 YP_002548385.1 CDS fabG NC_011989.1 458087 458884 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 458087..458884 Agrobacterium vitis S4 7388944 YP_002548386.1 CDS exsF NC_011989.1 459064 459447 D two component response regulator 459064..459447 Agrobacterium vitis S4 7388945 YP_002548387.1 CDS truA NC_011989.1 459475 460254 R mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A complement(459475..460254) Agrobacterium vitis S4 7388946 YP_002548388.1 CDS fmt NC_011989.1 460254 461216 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(460254..461216) Agrobacterium vitis S4 7388947 YP_002548389.1 CDS def NC_011989.1 461335 461865 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(461335..461865) Agrobacterium vitis S4 7388948 YP_002548390.1 CDS apaG NC_011989.1 461939 462331 R protein associated with Co2+ and Mg2+ efflux; ApaG complement(461939..462331) Agrobacterium vitis S4 7388949 YP_002548391.1 CDS metZ NC_011989.1 462735 463919 R catalyzes the conversion of O-succinylhomoserine and sulfide to homocysteine; second step in methionine biosynthesis; O-succinylhomoserine sulfhydrylase complement(462735..463919) Agrobacterium vitis S4 7388950 YP_002548392.1 CDS dcd NC_011989.1 464200 465276 D Catalyzes the deamination of dCTP to form dUTP; 2'-deoxycytidine 5'-triphosphate deaminase 464200..465276 Agrobacterium vitis S4 7388951 YP_002548393.1 CDS Avi_0546 NC_011989.1 465548 466264 R transposase complement(465548..466264) Agrobacterium vitis S4 7387996 YP_002548394.1 CDS Avi_0547 NC_011989.1 466361 466711 D transcriptional regulator ArsR family 466361..466711 Agrobacterium vitis S4 7388953 YP_002548395.1 CDS Avi_0548 NC_011989.1 466892 467278 R hypothetical protein complement(466892..467278) Agrobacterium vitis S4 7388954 YP_002548396.1 CDS Avi_0549 NC_011989.1 467275 467652 R hypothetical protein complement(467275..467652) Agrobacterium vitis S4 7388955 YP_002548397.1 CDS Avi_0550 NC_011989.1 467802 468503 R polyketide biosynthesis associated protein complement(467802..468503) Agrobacterium vitis S4 7388956 YP_002548398.1 CDS Avi_0551 NC_011989.1 468621 469301 D carboxylesterase 468621..469301 Agrobacterium vitis S4 7388957 YP_002548399.1 CDS gguC NC_011989.1 469399 470292 R hypothetical protein complement(469399..470292) Agrobacterium vitis S4 7388958 YP_002548400.1 CDS Avi_0553 NC_011989.1 470432 471793 R hypothetical protein complement(470432..471793) Agrobacterium vitis S4 7388959 YP_002548401.1 CDS Avi_0554 NC_011989.1 472157 473032 D LysR family transcriptional regulator 472157..473032 Agrobacterium vitis S4 7388960 YP_002548402.1 CDS Avi_0555 NC_011989.1 473273 474115 R LysR family transcriptional regulator complement(473273..474115) Agrobacterium vitis S4 7388961 YP_002548403.1 CDS attY NC_011989.1 474389 474898 D glutathione S-transferase 474389..474898 Agrobacterium vitis S4 7388962 YP_002548404.1 CDS Avi_0561 NC_011989.1 476132 476833 D transposase 476132..476833 Agrobacterium vitis S4 7388964 YP_002548405.1 CDS Avi_0563 NC_011989.1 477471 478187 D transposase 477471..478187 Agrobacterium vitis S4 7388965 YP_002548406.1 CDS Avi_0566 NC_011989.1 478470 479471 R hypothetical protein complement(478470..479471) Agrobacterium vitis S4 7388966 YP_002548407.1 CDS Avi_0567 NC_011989.1 479498 480973 R secretion protein HlyD family complement(479498..480973) Agrobacterium vitis S4 7388967 YP_002548408.1 CDS Avi_0570 NC_011989.1 480970 483123 R ABC transporter ATPase complement(480970..483123) Agrobacterium vitis S4 7388968 YP_002548409.1 CDS Avi_0571 NC_011989.1 483217 491265 R hypothetical protein complement(483217..491265) Agrobacterium vitis S4 7388969 YP_002548410.1 CDS Avi_0572 NC_011989.1 491878 492924 R hypothetical protein complement(491878..492924) Agrobacterium vitis S4 7388970 YP_002548411.1 CDS Avi_0574 NC_011989.1 494188 494532 R hypothetical protein complement(494188..494532) Agrobacterium vitis S4 7388971 YP_002548412.1 CDS Avi_0575 NC_011989.1 494605 494844 R hypothetical protein complement(494605..494844) Agrobacterium vitis S4 7388972 YP_002548413.1 CDS Avi_0576 NC_011989.1 495277 496407 D hypothetical protein 495277..496407 Agrobacterium vitis S4 7388973 YP_002548414.1 CDS Avi_0577 NC_011989.1 496646 498640 R glycosyltransferase complement(496646..498640) Agrobacterium vitis S4 7388974 YP_002548415.1 CDS Avi_0578 NC_011989.1 498658 499578 D amino acid ABC transporter substrate-binding protein 498658..499578 Agrobacterium vitis S4 7388975 YP_002548416.1 CDS Avi_0579 NC_011989.1 499598 500011 R hypothetical protein complement(499598..500011) Agrobacterium vitis S4 7388976 YP_002548417.1 CDS Avi_0583 NC_011989.1 500186 500860 R bacteriophage repressor protein complement(500186..500860) Agrobacterium vitis S4 7388977 YP_002548418.1 CDS Avi_0584 NC_011989.1 501085 501732 R two component response regulator complement(501085..501732) Agrobacterium vitis S4 7388978 YP_002548419.1 CDS Avi_0585 NC_011989.1 502096 502527 D hypothetical protein 502096..502527 Agrobacterium vitis S4 7388979 YP_002548420.1 CDS pyrD NC_011989.1 502524 503615 D catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 502524..503615 Agrobacterium vitis S4 7388980 YP_002548421.1 CDS dinF NC_011989.1 503591 504934 R DNA-damage-inducible protein F complement(503591..504934) Agrobacterium vitis S4 7388981 YP_002548422.1 CDS Avi_0588 NC_011989.1 504978 505547 R hypothetical protein complement(504978..505547) Agrobacterium vitis S4 7388982 YP_002548423.1 CDS Avi_0589 NC_011989.1 505570 505836 R hypothetical protein complement(505570..505836) Agrobacterium vitis S4 7388983 YP_002548424.1 CDS Avi_0591 NC_011989.1 506006 506986 D methyltransferase 506006..506986 Agrobacterium vitis S4 7388984 YP_002548425.1 CDS Avi_0592 NC_011989.1 507109 507753 D hypothetical protein 507109..507753 Agrobacterium vitis S4 7388985 YP_002548426.1 CDS Avi_0593 NC_011989.1 507853 508815 D hydrolase 507853..508815 Agrobacterium vitis S4 7388986 YP_002548427.1 CDS Avi_0596 NC_011989.1 509280 509831 D hypothetical protein 509280..509831 Agrobacterium vitis S4 7388987 YP_002548428.1 CDS fadB NC_011989.1 509894 512107 R enoyl-CoA hydratase complement(509894..512107) Agrobacterium vitis S4 7388988 YP_002548429.1 CDS Avi_0598 NC_011989.1 512123 513331 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(512123..513331) Agrobacterium vitis S4 7388989 YP_002548430.1 CDS acd NC_011989.1 513407 515200 R acyl-CoA dehydrogenase complement(513407..515200) Agrobacterium vitis S4 7388990 YP_002548431.1 CDS Avi_0601 NC_011989.1 515606 519433 D hypothetical protein 515606..519433 Agrobacterium vitis S4 7388991 YP_002548432.1 CDS Avi_0602 NC_011989.1 519822 520745 D hypothetical protein 519822..520745 Agrobacterium vitis S4 7388992 YP_002548433.1 CDS Avi_0603 NC_011989.1 520772 521560 D hypothetical protein 520772..521560 Agrobacterium vitis S4 7388993 YP_002548434.1 CDS Avi_0605 NC_011989.1 521666 523420 D alkaline phosphatase 521666..523420 Agrobacterium vitis S4 7388994 YP_002548435.1 CDS Avi_0606 NC_011989.1 523576 524043 D hypothetical protein 523576..524043 Agrobacterium vitis S4 7388995 YP_002548436.1 CDS Avi_0607 NC_011989.1 524050 524763 D ABC transporter ATPase 524050..524763 Agrobacterium vitis S4 7388996 YP_002548437.1 CDS Avi_0608 NC_011989.1 524760 526037 D permease component protein 524760..526037 Agrobacterium vitis S4 7388997 YP_002548438.1 CDS Avi_0609 NC_011989.1 526158 527543 D acid phosphatase 526158..527543 Agrobacterium vitis S4 7388998 YP_002548439.1 CDS pleD NC_011989.1 527652 529601 R two component response regulator complement(527652..529601) Agrobacterium vitis S4 7388999 YP_002548440.1 CDS Avi_0612 NC_011989.1 529864 530511 D hypothetical protein 529864..530511 Agrobacterium vitis S4 7389000 YP_002548441.1 CDS Avi_0614 NC_011989.1 530611 531381 D amino acid ABC transporter substrate-binding protein 530611..531381 Agrobacterium vitis S4 7389001 YP_002548442.1 CDS lhr NC_011989.1 531452 533959 D large ATP-dependent helicase-like protein 531452..533959 Agrobacterium vitis S4 7389002 YP_002548443.1 CDS Avi_0616 NC_011989.1 533991 534719 D hypothetical protein 533991..534719 Agrobacterium vitis S4 7389003 YP_002548444.1 CDS Avi_0617 NC_011989.1 534741 536150 R serine/threonine protein kinase complement(534741..536150) Agrobacterium vitis S4 7389004 YP_002548445.1 CDS Avi_0618 NC_011989.1 536152 536922 R phosphoesterase complement(536152..536922) Agrobacterium vitis S4 7389005 YP_002548446.1 CDS bapA NC_011989.1 537213 537695 R autotransporter protein complement(537213..537695) Agrobacterium vitis S4 7388258 YP_002548447.1 CDS Avi_0620 NC_011989.1 538015 541524 R two component sensor kinase/response regulator hybrid complement(538015..541524) Agrobacterium vitis S4 7388673 YP_002548448.1 CDS mscL NC_011989.1 541815 542249 D large conductance mechanosensitive channel protein 541815..542249 Agrobacterium vitis S4 7388674 YP_002548449.1 CDS aspB NC_011989.1 542472 543659 D catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase 542472..543659 Agrobacterium vitis S4 7388675 YP_002548450.1 CDS rfbF NC_011989.1 544304 545074 D glucose-1-phosphate cytidylyltransferase 544304..545074 Agrobacterium vitis S4 7388676 YP_002548451.1 CDS rfbG NC_011989.1 545059 546159 D CDP-glucose 4,6-dehydratase 545059..546159 Agrobacterium vitis S4 7388677 YP_002548452.1 CDS rfbC NC_011989.1 546156 546719 D dTDP-4-dehydrorhamnose 3,5-epimerase 546156..546719 Agrobacterium vitis S4 7388678 YP_002548453.1 CDS Avi_0629 NC_011989.1 546716 547945 D hypothetical protein 546716..547945 Agrobacterium vitis S4 7388679 YP_002548454.1 CDS Avi_0631 NC_011989.1 548070 549410 D glycosyltransferase 548070..549410 Agrobacterium vitis S4 7388680 YP_002548455.1 CDS Avi_0632 NC_011989.1 549633 550445 R cephalosporin protein complement(549633..550445) Agrobacterium vitis S4 7388681 YP_002548456.1 CDS Avi_0633 NC_011989.1 550669 551541 D epimerase 550669..551541 Agrobacterium vitis S4 7388682 YP_002548457.1 CDS Avi_0636 NC_011989.1 553249 553458 R hypothetical protein complement(553249..553458) Agrobacterium vitis S4 7387184 YP_002548458.1 CDS Avi_0638 NC_011989.1 553515 554135 R Maf; overexpression in Bacillus subtilis inhibits septation in the dividing cell; Maf-like protein complement(553515..554135) Agrobacterium vitis S4 7388684 YP_002548459.1 CDS infA NC_011989.1 554152 554370 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(554152..554370) Agrobacterium vitis S4 7388685 YP_002548460.1 CDS Avi_0641 NC_011989.1 554492 554995 R hypothetical protein complement(554492..554995) Agrobacterium vitis S4 7388686 YP_002548461.1 CDS Avi_0642 NC_011989.1 555006 555479 R hypothetical protein complement(555006..555479) Agrobacterium vitis S4 7388687 YP_002548462.1 CDS hisD NC_011989.1 555483 556781 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(555483..556781) Agrobacterium vitis S4 7388688 YP_002548463.1 CDS Avi_0644 NC_011989.1 556816 557271 R hypothetical protein complement(556816..557271) Agrobacterium vitis S4 7388689 YP_002548464.1 CDS murA NC_011989.1 557371 558663 R adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase complement(557371..558663) Agrobacterium vitis S4 7388690 YP_002548465.1 CDS Avi_0646 NC_011989.1 558798 559046 R hypothetical protein complement(558798..559046) Agrobacterium vitis S4 7388691 YP_002548466.1 CDS Avi_0647 NC_011989.1 559710 560363 D hypothetical protein 559710..560363 Agrobacterium vitis S4 7387997 YP_002548467.1 CDS Avi_0648 NC_011989.1 560424 561521 R transposase complement(560424..561521) Agrobacterium vitis S4 7388693 YP_002548468.1 CDS Avi_9910 NC_011989.1 561680 562024 R hypothetical protein complement(561680..562024) Agrobacterium vitis S4 7388694 YP_002548469.1 CDS Avi_0649 NC_011989.1 562782 563984 D hypothetical protein 562782..563984 Agrobacterium vitis S4 7387966 YP_002548470.1 CDS Avi_0650 NC_011989.1 563971 566100 D ATPase 563971..566100 Agrobacterium vitis S4 7388695 YP_002548471.1 CDS Avi_0652 NC_011989.1 567360 567950 R Transcriptional regulator protein complement(567360..567950) Agrobacterium vitis S4 7388696 YP_002548472.1 CDS Avi_0654 NC_011989.1 568071 568496 D hypothetical protein 568071..568496 Agrobacterium vitis S4 7388697 YP_002548473.1 CDS Avi_0656 NC_011989.1 568575 568970 D hypothetical protein 568575..568970 Agrobacterium vitis S4 7388698 YP_002548474.1 CDS Avi_0658 NC_011989.1 569268 569900 D phage integrase 569268..569900 Agrobacterium vitis S4 7388699 YP_002548475.1 CDS Avi_0659 NC_011989.1 570317 570907 D TetR family transcriptional regulator 570317..570907 Agrobacterium vitis S4 7388700 YP_002548476.1 CDS Avi_0660 NC_011989.1 570927 571211 D hypothetical protein 570927..571211 Agrobacterium vitis S4 7388701 YP_002548477.1 CDS tag NC_011989.1 571215 571958 D 3-methyladenine DNA glycosylase 571215..571958 Agrobacterium vitis S4 7388702 YP_002548478.1 CDS Avi_0664 NC_011989.1 572391 573107 R metal dependent hydrolase complement(572391..573107) Agrobacterium vitis S4 7388703 YP_002548479.1 CDS Avi_0666 NC_011989.1 573252 573578 R hypothetical protein complement(573252..573578) Agrobacterium vitis S4 7388704 YP_002548480.1 CDS Avi_0667 NC_011989.1 573584 574129 R hypothetical protein complement(573584..574129) Agrobacterium vitis S4 7388705 YP_002548481.1 CDS gcvA NC_011989.1 574298 575197 D LysR family transcriptional regulator 574298..575197 Agrobacterium vitis S4 7388706 YP_002548482.1 CDS Avi_0672 NC_011989.1 576187 576663 R hypothetical protein complement(576187..576663) Agrobacterium vitis S4 7388707 YP_002548483.1 CDS Avi_0673 NC_011989.1 576893 577795 D hypothetical protein 576893..577795 Agrobacterium vitis S4 7388708 YP_002548484.1 CDS Avi_0674 NC_011989.1 577838 578497 D hypothetical protein 577838..578497 Agrobacterium vitis S4 7388709 YP_002548485.1 CDS Avi_0676 NC_011989.1 578895 580172 D ATPase, AAA+ superfamily protein 578895..580172 Agrobacterium vitis S4 7388710 YP_002548486.1 CDS Avi_0677 NC_011989.1 580497 581183 R hypothetical protein complement(580497..581183) Agrobacterium vitis S4 7388711 YP_002548487.1 CDS Avi_0679 NC_011989.1 581652 581999 R hypothetical protein complement(581652..581999) Agrobacterium vitis S4 7388712 YP_002548488.1 CDS Avi_0680 NC_011989.1 581996 583660 R agrobacteirum virulence protein VirD4 complement(581996..583660) Agrobacterium vitis S4 7388713 YP_002548489.1 CDS traA NC_011989.1 584243 587560 D Ti-type conjugative transfer relaxase TraA 584243..587560 Agrobacterium vitis S4 7388714 YP_002548490.1 CDS istA NC_011989.1 587844 589361 D IS21 family transposase 587844..589361 Agrobacterium vitis S4 7388715 YP_002548491.1 CDS istB NC_011989.1 589351 590145 D IS21 family transposase 589351..590145 Agrobacterium vitis S4 7388716 YP_002548492.1 CDS Avi_0686 NC_011989.1 590874 591326 D transposase 590874..591326 Agrobacterium vitis S4 7388718 YP_002548493.1 CDS Avi_0687 NC_011989.1 591323 591676 D transposase 591323..591676 Agrobacterium vitis S4 7388719 YP_002548494.1 CDS Avi_0688 NC_011989.1 591722 593380 D transposase 591722..593380 Agrobacterium vitis S4 7388720 YP_002548495.1 CDS Avi_0689 NC_011989.1 593361 593594 R hypothetical protein complement(593361..593594) Agrobacterium vitis S4 7388721 YP_002548496.1 CDS Avi_0692 NC_011989.1 593930 594283 D transposase 593930..594283 Agrobacterium vitis S4 7388723 YP_002548497.1 CDS Avi_0693 NC_011989.1 594353 595966 D transposase 594353..595966 Agrobacterium vitis S4 7388724 YP_002548498.1 CDS Avi_0695 NC_011989.1 595963 596295 D hypothetical protein 595963..596295 Agrobacterium vitis S4 7388725 YP_002548499.1 CDS tnpA NC_011989.1 596548 596751 D ISL3 family transposase 596548..596751 Agrobacterium vitis S4 7388726 YP_002548500.1 CDS Avi_0697 NC_011989.1 596793 598874 R subtilisin-like serine protease complement(596793..598874) Agrobacterium vitis S4 7388727 YP_002548501.1 CDS Avi_9911 NC_011989.1 598862 599650 R peptidase S1 (chymotrypsin) family protein complement(598862..599650) Agrobacterium vitis S4 7388728 YP_002548502.1 CDS Avi_0698 NC_011989.1 600364 600570 R transcriptional regulator protein complement(600364..600570) Agrobacterium vitis S4 7387967 YP_002548503.1 CDS Avi_0700 NC_011989.1 601327 601914 D hypothetical protein 601327..601914 Agrobacterium vitis S4 7388729 YP_002548504.1 CDS Avi_0701 NC_011989.1 602223 602606 R nucleic acid-binding protein complement(602223..602606) Agrobacterium vitis S4 7388730 YP_002548505.1 CDS Avi_0702 NC_011989.1 602603 602803 R hypothetical protein complement(602603..602803) Agrobacterium vitis S4 7388731 YP_002548506.1 CDS Avi_0703 NC_011989.1 604211 607426 R phosphohydrolase complement(604211..607426) Agrobacterium vitis S4 7388732 YP_002548507.1 CDS parA NC_011989.1 607855 608529 D chromosome partitioning protein 607855..608529 Agrobacterium vitis S4 7388733 YP_002548508.1 CDS Avi_0710 NC_011989.1 610760 611791 D Integrase 610760..611791 Agrobacterium vitis S4 7388735 YP_002548509.1 CDS Avi_0711 NC_011989.1 612093 613340 R Capsule polysaccharide export protein complement(612093..613340) Agrobacterium vitis S4 7388736 YP_002548510.1 CDS Avi_0712 NC_011989.1 613398 614051 R cell surface polysaccharide export ABC-2 transporter ATP-binding protein complement(613398..614051) Agrobacterium vitis S4 7388737 YP_002548511.1 CDS Avi_0713 NC_011989.1 614054 615301 R capsule polysaccharide export inner-membrane protein complement(614054..615301) Agrobacterium vitis S4 7388738 YP_002548512.1 CDS Avi_0716 NC_011989.1 617987 619612 D ABC transporter ATPase 617987..619612 Agrobacterium vitis S4 7388740 YP_002548513.1 CDS Avi_0717 NC_011989.1 619621 620517 R transcriptional regulator protein complement(619621..620517) Agrobacterium vitis S4 7388741 YP_002548514.1 CDS fhuA NC_011989.1 620784 622958 D hydroxamate-type ferrisiderophore receptor 620784..622958 Agrobacterium vitis S4 7388742 YP_002548515.1 CDS Avi_0719 NC_011989.1 623089 623967 D hypothetical protein 623089..623967 Agrobacterium vitis S4 7388743 YP_002548516.1 CDS Avi_0720 NC_011989.1 624176 624619 R hypothetical protein complement(624176..624619) Agrobacterium vitis S4 7388744 YP_002548517.1 CDS flhB NC_011989.1 624625 625710 R membrane protein responsible for substrate specificity switching from rod/hook-type export to filament-type export; flagellar biosynthesis protein FlhB complement(624625..625710) Agrobacterium vitis S4 7388745 YP_002548518.1 CDS fliG NC_011989.1 625982 627025 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(625982..627025) Agrobacterium vitis S4 7388746 YP_002548519.1 CDS fliN NC_011989.1 627055 627717 R flagellar motor switch protein FliN complement(627055..627717) Agrobacterium vitis S4 7388747 YP_002548520.1 CDS fliM NC_011989.1 627781 628740 R flagellar motor switch protein complement(627781..628740) Agrobacterium vitis S4 7388748 YP_002548521.1 CDS motA NC_011989.1 628737 629612 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(628737..629612) Agrobacterium vitis S4 7388749 YP_002548522.1 CDS flgF NC_011989.1 629938 630672 D FlgF, with FlgB and C, makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar basal body rod protein FlgF 629938..630672 Agrobacterium vitis S4 7388750 YP_002548523.1 CDS fliI NC_011989.1 630695 632089 D involved in type III protein export during flagellum assembly; flagellum-specific ATP synthase 630695..632089 Agrobacterium vitis S4 7388751 YP_002548524.1 CDS Avi_0732 NC_011989.1 632157 632642 D hypothetical protein 632157..632642 Agrobacterium vitis S4 7388752 YP_002548525.1 CDS flgB NC_011989.1 632932 633324 D with FlgF and C makes up the proximal portion of the flagellar basal body rod; Bradyrhizobium have one thick flagellum and several thin flagella; the proteins in this cluster are associated with the thin flagella; flagellar basal body rod protein FlgB 632932..633324 Agrobacterium vitis S4 7388753 YP_002548526.1 CDS flgC NC_011989.1 633328 633765 D with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC 633328..633765 Agrobacterium vitis S4 7388754 YP_002548527.1 CDS fliE NC_011989.1 633762 634136 D forms a junction between the M-ring and FlgB during flagella biosynthesis; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar hook-basal body protein FliE 633762..634136 Agrobacterium vitis S4 7386496 YP_002548528.1 CDS flgG NC_011989.1 634155 634946 D flagellar basal-body rod protein 634155..634946 Agrobacterium vitis S4 7386247 YP_002548529.1 CDS flgA NC_011989.1 634964 635443 D flagellar protein FLGA precursor 634964..635443 Agrobacterium vitis S4 7386248 YP_002548530.1 CDS flgI NC_011989.1 635440 636555 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 635440..636555 Agrobacterium vitis S4 7386249 YP_002548531.1 CDS Avi_0743 NC_011989.1 636552 637121 D hypothetical protein 636552..637121 Agrobacterium vitis S4 7386250 YP_002548532.1 CDS flgH NC_011989.1 637118 637831 D part of the flagellar basal body which consists of four rings L,P, S and M mounted on a central rod; flagellar basal body L-ring protein 637118..637831 Agrobacterium vitis S4 7386251 YP_002548533.1 CDS fliL NC_011989.1 637997 638515 D flagellar protein 637997..638515 Agrobacterium vitis S4 7386252 YP_002548534.1 CDS fliP NC_011989.1 638512 639249 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 638512..639249 Agrobacterium vitis S4 7386253 YP_002548535.1 CDS flaA NC_011989.1 639514 640476 D flagella associated protein 639514..640476 Agrobacterium vitis S4 7386254 YP_002548536.1 CDS flaA NC_011989.1 640763 641725 D flagella associated protein 640763..641725 Agrobacterium vitis S4 7386255 YP_002548537.1 CDS flaA NC_011989.1 642114 643076 D flagella associated protein 642114..643076 Agrobacterium vitis S4 7386256 YP_002548538.1 CDS flaA NC_011989.1 643490 644452 D flagella associated protein 643490..644452 Agrobacterium vitis S4 7386257 YP_002548539.1 CDS flaB NC_011989.1 644858 645820 D flaB 644858..645820 Agrobacterium vitis S4 7386258 YP_002548540.1 CDS Avi_0755 NC_011989.1 646296 646946 D GTPase 646296..646946 Agrobacterium vitis S4 7386259 YP_002548541.1 CDS motB NC_011989.1 646943 648277 D with MotA forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotB 646943..648277 Agrobacterium vitis S4 7386260 YP_002548542.1 CDS Avi_0759 NC_011989.1 648282 649733 D a periplasmic protein that interacts with and stabilizes MotB; in Rhizobium, interactions between MotB and MotC at the periplasmic surface of the motor control the energy flux or the energy coupling that drives flagellar rotation; chemotaxis protein 648282..649733 Agrobacterium vitis S4 7386261 YP_002548543.1 CDS Avi_0760 NC_011989.1 649730 651589 D chemotaxis motility protein 649730..651589 Agrobacterium vitis S4 7386262 YP_002548544.1 CDS Avi_0761 NC_011989.1 651555 652103 D hypothetical protein 651555..652103 Agrobacterium vitis S4 7386263 YP_002548545.1 CDS Avi_0763 NC_011989.1 652440 653111 D transcriptional regulator 652440..653111 Agrobacterium vitis S4 7386264 YP_002548546.1 CDS flgE NC_011989.1 653242 654498 D the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE 653242..654498 Agrobacterium vitis S4 7386265 YP_002548547.1 CDS flgK NC_011989.1 654523 655977 D with FlgL acts as a hook filament junction protein to join the flagellar filament to the hook; flagellar hook-associated protein FlgK 654523..655977 Agrobacterium vitis S4 7386266 YP_002548548.1 CDS flgL NC_011989.1 655981 657048 D with FlgK acts as a hook filament junction protein to join the flagellar filament to the hook; Bradyrhizobium has one thick flagellum and several thin flagella; the Bradyrhizobium protein in this cluster is associated with the thin flagella; flagellar hook-associated protein FlgL 655981..657048 Agrobacterium vitis S4 7386267 YP_002548549.1 CDS flaF NC_011989.1 657083 657430 D acts as an activator or flagellin translation and may be required for filament secretion or assembly; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar biosynthesis regulatory protein FlaF 657083..657430 Agrobacterium vitis S4 7386268 YP_002548550.1 CDS flbT NC_011989.1 657427 657876 D post-transcriptional repressor of flagellum biosynthesis; promotes degradation of fljK mRNA: Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar biosynthesis repressor FlbT 657427..657876 Agrobacterium vitis S4 7386269 YP_002548551.1 CDS flgD NC_011989.1 657867 658322 D acts as a scaffold for the assembly of hook proteins onto the flagellar basal body rod; Yersinia, Vibrio parahaemolyticus, Bradyrhizobium and other organisms have 2 copies of some flagellar genes; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thin flagella; flagellar basal body rod modification protein 657867..658322 Agrobacterium vitis S4 7386270 YP_002548552.1 CDS fliQ NC_011989.1 658474 658740 D FliQ, with proteins FliP and FliR, forms the core of the central channel in the flagella export apparatus; Bradyrhizobium have one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar biosynthesis protein FliQ 658474..658740 Agrobacterium vitis S4 7386271 YP_002548553.1 CDS flhA NC_011989.1 658864 660954 D membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA 658864..660954 Agrobacterium vitis S4 7386272 YP_002548554.1 CDS fliR NC_011989.1 660951 661703 D FliR, with proteins FliP and FliQ, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliR 660951..661703 Agrobacterium vitis S4 7386273 YP_002548555.1 CDS Avi_0774 NC_011989.1 661767 662180 D hypothetical protein 661767..662180 Agrobacterium vitis S4 7386274 YP_002548556.1 CDS Avi_0776 NC_011989.1 662180 662812 D hypothetical protein 662180..662812 Agrobacterium vitis S4 7386275 YP_002548557.1 CDS Avi_0777 NC_011989.1 662987 663352 D hypothetical protein 662987..663352 Agrobacterium vitis S4 7386276 YP_002548558.1 CDS Avi_0778 NC_011989.1 663352 663882 D hypothetical protein 663352..663882 Agrobacterium vitis S4 7386277 YP_002548559.1 CDS tagA NC_011989.1 664230 665069 D teichoic acid biosynthesis protein 664230..665069 Agrobacterium vitis S4 7386278 YP_002548560.1 CDS folD NC_011989.1 665331 666122 D methylenetetrahydrofolate dehydrogenase 665331..666122 Agrobacterium vitis S4 7386279 YP_002548561.1 CDS aglR NC_011989.1 666124 667152 R transcriptional regulator repressor complement(666124..667152) Agrobacterium vitis S4 7386280 YP_002548562.1 CDS aglE NC_011989.1 667443 668801 D ABC transporter substrate binding protein (alpha-glucoside) 667443..668801 Agrobacterium vitis S4 7386281 YP_002548563.1 CDS aglF NC_011989.1 668865 669896 D ABC transporter permease 668865..669896 Agrobacterium vitis S4 7386282 YP_002548564.1 CDS aglG NC_011989.1 669898 671043 D ABC transporter permease 669898..671043 Agrobacterium vitis S4 7386283 YP_002548565.1 CDS aglA NC_011989.1 671120 672772 D alpha-glucosidase 671120..672772 Agrobacterium vitis S4 7386284 YP_002548566.1 CDS aglK NC_011989.1 672850 673938 D ABC transporter 672850..673938 Agrobacterium vitis S4 7386285 YP_002548567.1 CDS Avi_0790 NC_011989.1 674077 674484 D hypothetical protein 674077..674484 Agrobacterium vitis S4 7386286 YP_002548568.1 CDS Avi_0791 NC_011989.1 675093 676478 D hypothetical protein 675093..676478 Agrobacterium vitis S4 7386287 YP_002548569.1 CDS Avi_0792 NC_011989.1 676536 677933 R Na+/citrate symporter protein complement(676536..677933) Agrobacterium vitis S4 7386288 YP_002548570.1 CDS mcpA NC_011989.1 678187 680409 R methyl-accepting chemotaxis protein complement(678187..680409) Agrobacterium vitis S4 7386289 YP_002548571.1 CDS edd NC_011989.1 681257 683074 R catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase complement(681257..683074) Agrobacterium vitis S4 7386290 YP_002548572.1 CDS pgl NC_011989.1 683218 683937 R 6-phosphogluconolactonase complement(683218..683937) Agrobacterium vitis S4 7386291 YP_002548573.1 CDS zwf NC_011989.1 683930 685399 R catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase complement(683930..685399) Agrobacterium vitis S4 7386292 YP_002548574.1 CDS ordL NC_011989.1 685545 686828 R oxidoreductase complement(685545..686828) Agrobacterium vitis S4 7386293 YP_002548575.1 CDS glnA NC_011989.1 686899 688335 R glutamine synthetase complement(686899..688335) Agrobacterium vitis S4 7386294 YP_002548576.1 CDS Avi_0801 NC_011989.1 688464 689651 D hypothetical protein 688464..689651 Agrobacterium vitis S4 7386295 YP_002548577.1 CDS Avi_0805 NC_011989.1 690309 691214 D LysR family transcriptional regulator 690309..691214 Agrobacterium vitis S4 7386296 YP_002548578.1 CDS mclA NC_011989.1 691473 694001 D methyl-accepting chemotaxis protein 691473..694001 Agrobacterium vitis S4 7386297 YP_002548579.1 CDS Avi_0808 NC_011989.1 694467 694955 D Phosphoserine phosphatase 694467..694955 Agrobacterium vitis S4 7386298 YP_002548580.1 CDS Avi_0811 NC_011989.1 695442 697097 D ABC transporter ATPase 695442..697097 Agrobacterium vitis S4 7386299 YP_002548581.1 CDS tetA NC_011989.1 697369 698562 D tetracycline resistance protein 697369..698562 Agrobacterium vitis S4 7386300 YP_002548582.1 CDS Avi_0814 NC_011989.1 698605 698865 R hypothetical protein complement(698605..698865) Agrobacterium vitis S4 7386301 YP_002548583.1 CDS aceA NC_011989.1 699018 700307 R isocitrate lyase complement(699018..700307) Agrobacterium vitis S4 7386302 YP_002548584.1 CDS Avi_0818 NC_011989.1 700556 701965 D transcriptional regulator 700556..701965 Agrobacterium vitis S4 7386303 YP_002548585.1 CDS potF NC_011989.1 702088 703203 D ABC transporter substrate binding protein (putrescine) 702088..703203 Agrobacterium vitis S4 7386304 YP_002548586.1 CDS potG NC_011989.1 703306 704454 D ABC transporter nucleotide binding/ATPase (putrescine) 703306..704454 Agrobacterium vitis S4 7386305 YP_002548587.1 CDS potB NC_011989.1 704528 705388 D ABC transporter permease 704528..705388 Agrobacterium vitis S4 7386306 YP_002548588.1 CDS Avi_0825 NC_011989.1 705398 706213 D ABC transporter permease 705398..706213 Agrobacterium vitis S4 7386307 YP_002548589.1 CDS Avi_0826 NC_011989.1 706223 708178 R AsmA family protein complement(706223..708178) Agrobacterium vitis S4 7386308 YP_002548590.1 CDS pleC NC_011989.1 708276 712508 R two component sensor kinase complement(708276..712508) Agrobacterium vitis S4 7386309 YP_002548591.1 CDS Avi_0828 NC_011989.1 712743 713192 D hypothetical protein 712743..713192 Agrobacterium vitis S4 7386310 YP_002548592.1 CDS ureJ NC_011989.1 713498 714166 R urease accessory protein complement(713498..714166) Agrobacterium vitis S4 7387998 YP_002548593.1 CDS ureJ NC_011989.1 714409 715017 D urease accessory protein 714409..715017 Agrobacterium vitis S4 7386312 YP_002548594.1 CDS Avi_0833 NC_011989.1 715805 716425 D ABC transporter substrate-binding protein 715805..716425 Agrobacterium vitis S4 7386313 YP_002548595.1 CDS Avi_0834 NC_011989.1 716420 716851 R hypothetical protein complement(716420..716851) Agrobacterium vitis S4 7386314 YP_002548596.1 CDS Avi_0835 NC_011989.1 716866 717747 R LysR family transcriptional regulator complement(716866..717747) Agrobacterium vitis S4 7386315 YP_002548597.1 CDS mmsA NC_011989.1 717850 719346 D methylmalonate-semialdehyde dehydrogenase 717850..719346 Agrobacterium vitis S4 7386316 YP_002548598.1 CDS rirA NC_011989.1 719709 720179 D rhizobial iron regulator; in Sinorhizobium meliloti mutations in this gene affect the expression of a number of iron-responsive operons; iron-responsive transcriptional regulator 719709..720179 Agrobacterium vitis S4 7386317 YP_002548599.1 CDS gntK NC_011989.1 720329 720874 D gluconokinase 720329..720874 Agrobacterium vitis S4 7386318 YP_002548600.1 CDS Avi_0842 NC_011989.1 720891 721628 R CDPdiacylglycerol diphosphatase complement(720891..721628) Agrobacterium vitis S4 7386319 YP_002548601.1 CDS dadA NC_011989.1 721737 722984 R D-amino acid dehydrogenase small subunit complement(721737..722984) Agrobacterium vitis S4 7386320 YP_002548602.1 CDS Avi_0846 NC_011989.1 723118 724242 R hypothetical protein complement(723118..724242) Agrobacterium vitis S4 7386321 YP_002548603.1 CDS Avi_0847 NC_011989.1 724472 724870 D hypothetical protein 724472..724870 Agrobacterium vitis S4 7386322 YP_002548604.1 CDS Avi_0849 NC_011989.1 724941 726278 R Two-component sensor histidine kinase complement(724941..726278) Agrobacterium vitis S4 7386323 YP_002548605.1 CDS Avi_0850 NC_011989.1 726307 726984 R two component response regulator complement(726307..726984) Agrobacterium vitis S4 7386324 YP_002548606.1 CDS mqo NC_011989.1 727483 729042 D malate dehydrogenase; catalyzes the oxidation of malate to oxaloacetate; malate:quinone oxidoreductase 727483..729042 Agrobacterium vitis S4 7386325 YP_002548607.1 CDS ndh NC_011989.1 729285 730562 D NADH dehydrogenase 729285..730562 Agrobacterium vitis S4 7386326 YP_002548608.1 CDS Avi_0854 NC_011989.1 730644 730778 D hypothetical protein 730644..730778 Agrobacterium vitis S4 7386327 YP_002548609.1 CDS Avi_0855 NC_011989.1 731021 731452 R hypothetical protein complement(731021..731452) Agrobacterium vitis S4 7386328 YP_002548610.1 CDS Avi_0857 NC_011989.1 732159 733097 D prophage lambdaBa02 DNA replication protein 732159..733097 Agrobacterium vitis S4 7388922 YP_002548611.1 CDS Avi_0858 NC_011989.1 733305 734531 D phage lambdaBa02, DNA replication protein 733305..734531 Agrobacterium vitis S4 7387675 YP_002548612.1 CDS Avi_0860 NC_011989.1 734925 735476 D phage prohead protease, HK97 family 734925..735476 Agrobacterium vitis S4 7387676 YP_002548613.1 CDS Avi_0861 NC_011989.1 735478 736689 D phage phi-C31 gp36 major capsid-like protein 735478..736689 Agrobacterium vitis S4 7387677 YP_002548614.1 CDS Avi_0862 NC_011989.1 736724 737110 D hypothetical protein 736724..737110 Agrobacterium vitis S4 7387678 YP_002548615.1 CDS Avi_0864 NC_011989.1 737113 737475 D Restriction endonuclease 737113..737475 Agrobacterium vitis S4 7387679 YP_002548616.1 CDS Avi_0865 NC_011989.1 737472 737960 D hypothetical protein 737472..737960 Agrobacterium vitis S4 7387680 YP_002548617.1 CDS Avi_0866 NC_011989.1 737964 738434 D hypothetical protein 737964..738434 Agrobacterium vitis S4 7387681 YP_002548618.1 CDS Avi_0867 NC_011989.1 738431 738742 D hypothetical protein 738431..738742 Agrobacterium vitis S4 7387682 YP_002548619.1 CDS Avi_0868 NC_011989.1 738744 739661 D hypothetical protein 738744..739661 Agrobacterium vitis S4 7387683 YP_002548620.1 CDS Avi_0869 NC_011989.1 739658 739969 D Bacteriophage head-tail adaptor protein 739658..739969 Agrobacterium vitis S4 7387684 YP_002548621.1 CDS Avi_0871 NC_011989.1 739966 740403 D Phage terminase 739966..740403 Agrobacterium vitis S4 7387685 YP_002548622.1 CDS Avi_0872 NC_011989.1 740384 741976 D Phage terminase-like protein 740384..741976 Agrobacterium vitis S4 7387686 YP_002548623.1 CDS Avi_0873 NC_011989.1 741976 744081 D Methyl-accepting chemotaxis protein 741976..744081 Agrobacterium vitis S4 7387687 YP_002548624.1 CDS Avi_0874 NC_011989.1 744081 744440 D hypothetical protein 744081..744440 Agrobacterium vitis S4 7387688 YP_002548625.1 CDS Avi_0876 NC_011989.1 744446 745375 D hypothetical protein 744446..745375 Agrobacterium vitis S4 7387689 YP_002548626.1 CDS Avi_0879 NC_011989.1 745830 746129 R hypothetical protein complement(745830..746129) Agrobacterium vitis S4 7387690 YP_002548627.1 CDS Avi_0880 NC_011989.1 746206 746730 R hypothetical protein complement(746206..746730) Agrobacterium vitis S4 7387691 YP_002548628.1 CDS Avi_0883 NC_011989.1 747050 747400 D hypothetical protein 747050..747400 Agrobacterium vitis S4 7387692 YP_002548629.1 CDS intD NC_011989.1 748068 749117 D phage-related integrase 748068..749117 Agrobacterium vitis S4 7387693 YP_002548630.1 CDS ppx NC_011989.1 749556 751367 D exopolyphosphatase 749556..751367 Agrobacterium vitis S4 7387183 YP_002548631.1 CDS ftsJ NC_011989.1 751452 752237 D cell division protein 751452..752237 Agrobacterium vitis S4 7387695 YP_002548632.1 CDS Avi_0890 NC_011989.1 752249 752632 D hypothetical protein 752249..752632 Agrobacterium vitis S4 7387696 YP_002548633.1 CDS Avi_0891 NC_011989.1 752660 753961 R GGDEF family protein complement(752660..753961) Agrobacterium vitis S4 7387697 YP_002548634.1 CDS Avi_0893 NC_011989.1 754289 755953 R two component sensor kinase complement(754289..755953) Agrobacterium vitis S4 7387698 YP_002548635.1 CDS mutL NC_011989.1 756317 758170 D This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein 756317..758170 Agrobacterium vitis S4 7387699 YP_002548636.1 CDS Avi_0896 NC_011989.1 758287 758517 D hypothetical protein 758287..758517 Agrobacterium vitis S4 7387700 YP_002548637.1 CDS lpxK NC_011989.1 758535 759572 R tetraacyldisaccharide 4'-kinase complement(758535..759572) Agrobacterium vitis S4 7387701 YP_002548638.1 CDS Avi_0898 NC_011989.1 759583 760323 R phosphatase complement(759583..760323) Agrobacterium vitis S4 7387702 YP_002548639.1 CDS kdtA NC_011989.1 760320 761639 R catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase complement(760320..761639) Agrobacterium vitis S4 7387703 YP_002548640.1 CDS Avi_0900 NC_011989.1 761806 762042 R hypothetical protein complement(761806..762042) Agrobacterium vitis S4 7387704 YP_002548641.1 CDS Avi_0902 NC_011989.1 762157 762969 R inositol monophosphatase family protein complement(762157..762969) Agrobacterium vitis S4 7387705 YP_002548642.1 CDS Avi_0903 NC_011989.1 763012 764358 R PmbA/TldD related protein complement(763012..764358) Agrobacterium vitis S4 7387706 YP_002548643.1 CDS kefB NC_011989.1 764570 766396 D glutathione-regulated potassium-efflux system protein 764570..766396 Agrobacterium vitis S4 7387707 YP_002548644.1 CDS Avi_0906 NC_011989.1 766547 767425 R hypothetical protein complement(766547..767425) Agrobacterium vitis S4 7387708 YP_002548645.1 CDS Avi_0907 NC_011989.1 767595 768155 R hypothetical protein complement(767595..768155) Agrobacterium vitis S4 7387709 YP_002548646.1 CDS rluB NC_011989.1 768162 770276 R ribosomal large subunit pseudouridine synthase B complement(768162..770276) Agrobacterium vitis S4 7387710 YP_002548647.1 CDS codA NC_011989.1 770349 770798 D cytidine and deoxycytidylate deaminase 770349..770798 Agrobacterium vitis S4 7387711 YP_002548648.1 CDS Avi_0912 NC_011989.1 770854 771735 R metallo-beta-lactamase superfamily protein complement(770854..771735) Agrobacterium vitis S4 7387712 YP_002548649.1 CDS Avi_0914 NC_011989.1 772230 773651 D MFS permease 772230..773651 Agrobacterium vitis S4 7387713 YP_002548650.1 CDS Avi_0915 NC_011989.1 773735 774268 R hypothetical protein complement(773735..774268) Agrobacterium vitis S4 7387714 YP_002548651.1 CDS Avi_0916 NC_011989.1 774518 775399 R calcium-binding protein regucalcin complement(774518..775399) Agrobacterium vitis S4 7387715 YP_002548652.1 CDS avhR NC_011989.1 776222 776914 D transcriptional regulator LuxR family 776222..776914 Agrobacterium vitis S4 7387716 YP_002548653.1 CDS nrt NC_011989.1 777059 778255 D ABC transporter ATPase 777059..778255 Agrobacterium vitis S4 7387717 YP_002548654.1 CDS Avi_0923 NC_011989.1 778842 780002 D mrp protein 778842..780002 Agrobacterium vitis S4 7387718 YP_002548655.1 CDS corA NC_011989.1 780400 781341 D magnesium/cobalt transport protein 780400..781341 Agrobacterium vitis S4 7387719 YP_002548656.1 CDS Avi_0927 NC_011989.1 781357 783261 D potassium uptake protein 781357..783261 Agrobacterium vitis S4 7387720 YP_002548657.1 CDS atpI NC_011989.1 783570 783917 D ATP synthase subunit I 783570..783917 Agrobacterium vitis S4 7387721 YP_002548658.1 CDS atpB NC_011989.1 783994 784746 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 783994..784746 Agrobacterium vitis S4 7387722 YP_002548659.1 CDS atpC NC_011989.1 784814 785041 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 784814..785041 Agrobacterium vitis S4 7387723 YP_002548660.1 CDS atpB NC_011989.1 785121 785705 D ATP synthase 785121..785705 Agrobacterium vitis S4 7387724 YP_002548661.1 CDS atpF NC_011989.1 785710 786195 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 785710..786195 Agrobacterium vitis S4 7387725 YP_002548662.1 CDS rnhB NC_011989.1 786352 787191 R ribonuclease HII complement(786352..787191) Agrobacterium vitis S4 7387726 YP_002548663.1 CDS Avi_0937 NC_011989.1 787590 788747 R hypothetical protein complement(787590..788747) Agrobacterium vitis S4 7387727 YP_002548664.1 CDS Avi_0939 NC_011989.1 789018 789539 D hypothetical protein 789018..789539 Agrobacterium vitis S4 7387728 YP_002548665.1 CDS moaB NC_011989.1 789619 790167 R molybdenum cofactor biosynthesis protein B complement(789619..790167) Agrobacterium vitis S4 7387729 YP_002548666.1 CDS ispE NC_011989.1 790279 791151 R An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(790279..791151) Agrobacterium vitis S4 7387730 YP_002548667.1 CDS Avi_0942 NC_011989.1 791199 793058 R hypothetical protein complement(791199..793058) Agrobacterium vitis S4 7387731 YP_002548668.1 CDS ispB NC_011989.1 793433 794449 R octaprenyl-diphosphate synthase complement(793433..794449) Agrobacterium vitis S4 7387732 YP_002548669.1 CDS Avi_0944 NC_011989.1 794668 795006 D hypothetical protein 794668..795006 Agrobacterium vitis S4 7387733 YP_002548670.1 CDS Avi_0945 NC_011989.1 795098 795826 D hypothetical protein 795098..795826 Agrobacterium vitis S4 7387734 YP_002548671.1 CDS sohB NC_011989.1 795933 796799 D proteinase sohB 795933..796799 Agrobacterium vitis S4 7387735 YP_002548672.1 CDS Avi_0948 NC_011989.1 796899 797114 D hypothetical protein 796899..797114 Agrobacterium vitis S4 7387736 YP_002548673.1 CDS Avi_0950 NC_011989.1 797651 798655 D Signal transduction histidine kinase 797651..798655 Agrobacterium vitis S4 7387737 YP_002548674.1 CDS glyQ NC_011989.1 798766 799737 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 798766..799737 Agrobacterium vitis S4 7387738 YP_002548675.1 CDS aroA NC_011989.1 800635 801906 D 3-phosphoshikimate 1-carboxyvinyltransferase 800635..801906 Agrobacterium vitis S4 7387739 YP_002548676.1 CDS glyS NC_011989.1 802014 804308 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 802014..804308 Agrobacterium vitis S4 7387740 YP_002548677.1 CDS Avi_0957 NC_011989.1 804326 804817 D hypothetical protein 804326..804817 Agrobacterium vitis S4 7387741 YP_002548678.1 CDS mcpA NC_011989.1 804871 806703 R methyl-accepting chemotaxis protein complement(804871..806703) Agrobacterium vitis S4 7387742 YP_002548679.1 CDS Avi_0959 NC_011989.1 806913 807353 R hypothetical protein complement(806913..807353) Agrobacterium vitis S4 7387743 YP_002548680.1 CDS purD NC_011989.1 807429 808709 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(807429..808709) Agrobacterium vitis S4 7387744 YP_002548681.1 CDS Avi_0961 NC_011989.1 808763 809830 R hypothetical protein complement(808763..809830) Agrobacterium vitis S4 7387745 YP_002548682.1 CDS Avi_0962 NC_011989.1 810063 812375 D hypothetical protein 810063..812375 Agrobacterium vitis S4 7387746 YP_002548683.1 CDS cfa NC_011989.1 812610 813866 D cyclopropane-fatty-acyl-phospholipid synthase 812610..813866 Agrobacterium vitis S4 7387747 YP_002548684.1 CDS ubiA NC_011989.1 813939 814892 D UbiA prenyltransferase family catalyzes the transfer of a prenyl group to various acceptors with hydrophobic ring structures in the biosynthesis of respiratory quinones, hemes, chlorophylls, vitamin E, and shikonin; 4-hydroxybenzoate polyprenyltransferase 813939..814892 Agrobacterium vitis S4 7387748 YP_002548685.1 CDS Avi_0966 NC_011989.1 814967 815242 D hypothetical protein 814967..815242 Agrobacterium vitis S4 7387749 YP_002548686.1 CDS Avi_0967 NC_011989.1 815239 816306 D cation efflux system protein 815239..816306 Agrobacterium vitis S4 7387750 YP_002548687.1 CDS Avi_0968 NC_011989.1 816428 817009 R hypothetical protein complement(816428..817009) Agrobacterium vitis S4 7387751 YP_002548688.1 CDS Avi_0969 NC_011989.1 817616 819799 D hypothetical protein 817616..819799 Agrobacterium vitis S4 7387752 YP_002548689.1 CDS modA NC_011989.1 819932 820750 D molybdate ABC transporter substrate-binding protein 819932..820750 Agrobacterium vitis S4 7387753 YP_002548690.1 CDS modB NC_011989.1 820782 821477 D molybdate ABC transporter permease 820782..821477 Agrobacterium vitis S4 7387754 YP_002548691.1 CDS modC NC_011989.1 821474 822571 D molybdate ABC transporter ATP-binding protein 821474..822571 Agrobacterium vitis S4 7387755 YP_002548692.1 CDS modE NC_011989.1 822603 823001 R molybdenum-binding transcriptional repressor complement(822603..823001) Agrobacterium vitis S4 7387756 YP_002548693.1 CDS Avi_0975 NC_011989.1 823001 824431 R FAD dependent oxidoreductase complement(823001..824431) Agrobacterium vitis S4 7387077 YP_002548694.1 CDS Avi_0976 NC_011989.1 824487 825458 R hypothetical protein complement(824487..825458) Agrobacterium vitis S4 7387078 YP_002548695.1 CDS Avi_0978 NC_011989.1 825667 826737 D GGDEF family protein 825667..826737 Agrobacterium vitis S4 7387079 YP_002548696.1 CDS mcpC NC_011989.1 827614 829449 D methyl-accepting chemotaxis protein 827614..829449 Agrobacterium vitis S4 7387080 YP_002548697.1 CDS Avi_0981 NC_011989.1 829915 831204 D ring hydroxylating dioxygenase alpha-subunit 829915..831204 Agrobacterium vitis S4 7387081 YP_002548698.1 CDS Avi_0982 NC_011989.1 831201 832289 D ferredoxin I 831201..832289 Agrobacterium vitis S4 7387082 YP_002548699.1 CDS Avi_0983 NC_011989.1 832458 833063 R hypothetical protein complement(832458..833063) Agrobacterium vitis S4 7387083 YP_002548700.1 CDS Avi_0984 NC_011989.1 833389 833847 D hypothetical protein 833389..833847 Agrobacterium vitis S4 7387084 YP_002548701.1 CDS Avi_0985 NC_011989.1 833905 834900 R divalent cation transporter complement(833905..834900) Agrobacterium vitis S4 7387085 YP_002548702.1 CDS mmgC NC_011989.1 835119 836894 D acyl-CoA dehydrogenase 835119..836894 Agrobacterium vitis S4 7387086 YP_002548703.1 CDS Avi_0987 NC_011989.1 836898 837656 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 836898..837656 Agrobacterium vitis S4 7387087 YP_002548704.1 CDS mcpA NC_011989.1 837765 839852 R methyl-accepting chemotaxis protein complement(837765..839852) Agrobacterium vitis S4 7387088 YP_002548705.1 CDS Avi_0989 NC_011989.1 840527 840838 D hypothetical protein 840527..840838 Agrobacterium vitis S4 7387089 YP_002548706.1 CDS rumA NC_011989.1 840841 842097 R 23S rRNA (uracil-5-)-methyltransferase RumA complement(840841..842097) Agrobacterium vitis S4 7387090 YP_002548707.1 CDS Avi_0992 NC_011989.1 842094 842885 R hemolysin A complement(842094..842885) Agrobacterium vitis S4 7387091 YP_002548708.1 CDS Avi_0993 NC_011989.1 842941 843258 R hypothetical protein complement(842941..843258) Agrobacterium vitis S4 7387092 YP_002548709.1 CDS mcpG NC_011989.1 843382 845331 D methyl-accepting chemotaxis protein 843382..845331 Agrobacterium vitis S4 7387093 YP_002548710.1 CDS Avi_0996 NC_011989.1 846617 848560 D methyl-accepting chemotaxis protein 846617..848560 Agrobacterium vitis S4 7387094 YP_002548711.1 CDS dxs NC_011989.1 848685 850604 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(848685..850604) Agrobacterium vitis S4 7387095 YP_002548712.1 CDS xseB NC_011989.1 850897 851148 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(850897..851148) Agrobacterium vitis S4 7387096 YP_002548713.1 CDS Avi_0999 NC_011989.1 851151 852086 R deacetylase complement(851151..852086) Agrobacterium vitis S4 7387097 YP_002548714.1 CDS Avi_1002 NC_011989.1 852170 852571 D hypothetical protein 852170..852571 Agrobacterium vitis S4 7387098 YP_002548715.1 CDS kka NC_011989.1 852574 853449 R aminoglycoside phosphotransferase complement(852574..853449) Agrobacterium vitis S4 7387099 YP_002548716.1 CDS bioY NC_011989.1 853506 854069 R biotin synthesis BioY protein complement(853506..854069) Agrobacterium vitis S4 7387100 YP_002548717.1 CDS Avi_1006 NC_011989.1 854083 854703 R ABC transporter permease complement(854083..854703) Agrobacterium vitis S4 7387101 YP_002548718.1 CDS Avi_1007 NC_011989.1 854697 855377 R ABC transporter nucleotide binding/ATPase (cobalt) complement(854697..855377) Agrobacterium vitis S4 7387102 YP_002548719.1 CDS speB NC_011989.1 855514 856470 D agmatinase 855514..856470 Agrobacterium vitis S4 7387103 YP_002548720.1 CDS Avi_1010 NC_011989.1 856531 857724 D hypothetical protein 856531..857724 Agrobacterium vitis S4 7387104 YP_002548721.1 CDS Avi_1011 NC_011989.1 857714 858172 R hypothetical protein complement(857714..858172) Agrobacterium vitis S4 7387105 YP_002548722.1 CDS Avi_1012 NC_011989.1 858275 858580 R hypothetical protein complement(858275..858580) Agrobacterium vitis S4 7387106 YP_002548723.1 CDS Avi_1013 NC_011989.1 858819 859397 R hypothetical protein complement(858819..859397) Agrobacterium vitis S4 7387107 YP_002548724.1 CDS ribA NC_011989.1 859487 860587 R 34-dihydroxy-2-butanone-4-phoshate synthase/GTP cyclohydrolase II complement(859487..860587) Agrobacterium vitis S4 7387108 YP_002548725.1 CDS aroC NC_011989.1 860599 861693 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(860599..861693) Agrobacterium vitis S4 7387109 YP_002548726.1 CDS Avi_1017 NC_011989.1 861836 864991 R GGDEF family protein complement(861836..864991) Agrobacterium vitis S4 7387110 YP_002548727.1 CDS Avi_1019 NC_011989.1 865678 865938 D hypothetical protein 865678..865938 Agrobacterium vitis S4 7387111 YP_002548728.1 CDS gpmB NC_011989.1 865949 866539 R phosphoglycerate mutase complement(865949..866539) Agrobacterium vitis S4 7387112 YP_002548729.1 CDS fabI NC_011989.1 866586 867464 R Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase complement(866586..867464) Agrobacterium vitis S4 7387113 YP_002548730.1 CDS dnaJ NC_011989.1 867595 868884 R molecular chaperone DnaJ family complement(867595..868884) Agrobacterium vitis S4 7387114 YP_002548731.1 CDS Avi_1024 NC_011989.1 869273 869725 R hypothetical protein complement(869273..869725) Agrobacterium vitis S4 7387115 YP_002548732.1 CDS pdxH NC_011989.1 869788 870408 D pyridoxamine 5'-phosphate oxidase 869788..870408 Agrobacterium vitis S4 7387116 YP_002548733.1 CDS Avi_1027 NC_011989.1 870437 871486 R hypothetical protein complement(870437..871486) Agrobacterium vitis S4 7387117 YP_002548734.1 CDS Avi_1028 NC_011989.1 871732 873186 R MFS permease complement(871732..873186) Agrobacterium vitis S4 7387118 YP_002548735.1 CDS soxR NC_011989.1 873271 873756 D redox-sensitive transcriptional activator SoxR 873271..873756 Agrobacterium vitis S4 7387119 YP_002548736.1 CDS Avi_1030 NC_011989.1 873937 875265 D D-alanyl-D-alanine carboxypeptidase (penicillin binding protein) 873937..875265 Agrobacterium vitis S4 7387120 YP_002548737.1 CDS Avi_1032 NC_011989.1 875528 875857 D hypothetical protein 875528..875857 Agrobacterium vitis S4 7387121 YP_002548738.1 CDS Avi_1033 NC_011989.1 875934 876698 R FirrV-1-B8 complement(875934..876698) Agrobacterium vitis S4 7387122 YP_002548739.1 CDS Avi_1034 NC_011989.1 876863 877516 R hydrolase complement(876863..877516) Agrobacterium vitis S4 7387123 YP_002548740.1 CDS Avi_1035 NC_011989.1 877523 877954 R hypothetical protein complement(877523..877954) Agrobacterium vitis S4 7387124 YP_002548741.1 CDS tldD NC_011989.1 877954 879369 R TldD complement(877954..879369) Agrobacterium vitis S4 7387125 YP_002548742.1 CDS ialB NC_011989.1 879463 880191 R invasion associated locus B complement(879463..880191) Agrobacterium vitis S4 7387126 YP_002548743.1 CDS coxB NC_011989.1 880584 881522 D cytochrome c oxidase subunit II 880584..881522 Agrobacterium vitis S4 7387127 YP_002548744.1 CDS ctaD NC_011989.1 881537 883216 D cytochrome c oxidase subunit I 881537..883216 Agrobacterium vitis S4 7387128 YP_002548745.1 CDS cyoE NC_011989.1 883269 884246 D converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase 883269..884246 Agrobacterium vitis S4 7387129 YP_002548746.1 CDS Avi_1043 NC_011989.1 884246 884383 D hypothetical protein 884246..884383 Agrobacterium vitis S4 7387130 YP_002548747.1 CDS coxG NC_011989.1 884528 885145 D cytochrome C oxidase assembly protein 884528..885145 Agrobacterium vitis S4 7387131 YP_002548748.1 CDS coxC NC_011989.1 885336 886214 D cytochrome c oxidase subunit III 885336..886214 Agrobacterium vitis S4 7387132 YP_002548749.1 CDS Avi_1046 NC_011989.1 886453 886833 D hypothetical protein 886453..886833 Agrobacterium vitis S4 7387133 YP_002548750.1 CDS Avi_1048 NC_011989.1 886835 887560 D cytochrome oxidase complex biogenesis factor transmembrane protein 886835..887560 Agrobacterium vitis S4 7387134 YP_002548751.1 CDS Avi_1051 NC_011989.1 887723 888094 D hypothetical protein 887723..888094 Agrobacterium vitis S4 7387135 YP_002548752.1 CDS ispH NC_011989.1 888097 889131 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 888097..889131 Agrobacterium vitis S4 7387136 YP_002548753.1 CDS Avi_1053 NC_011989.1 889159 890046 R beta-lactamase class D complement(889159..890046) Agrobacterium vitis S4 7387137 YP_002548754.1 CDS Avi_1054 NC_011989.1 890102 891865 R hypothetical protein complement(890102..891865) Agrobacterium vitis S4 7387138 YP_002548755.1 CDS Avi_1055 NC_011989.1 891897 892499 R hypothetical protein complement(891897..892499) Agrobacterium vitis S4 7387139 YP_002548756.1 CDS aatA NC_011989.1 892566 893768 R aspartate aminotransferase A complement(892566..893768) Agrobacterium vitis S4 7387140 YP_002548757.1 CDS Avi_1057 NC_011989.1 893894 894364 R hypothetical protein complement(893894..894364) Agrobacterium vitis S4 7387141 YP_002548758.1 CDS thrB NC_011989.1 894676 895641 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 894676..895641 Agrobacterium vitis S4 7387142 YP_002548759.1 CDS rnhA NC_011989.1 895638 896102 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 895638..896102 Agrobacterium vitis S4 7387143 YP_002548760.1 CDS Avi_1061 NC_011989.1 896129 896437 D hypothetical protein 896129..896437 Agrobacterium vitis S4 7387144 YP_002548761.1 CDS Avi_1062 NC_011989.1 896502 897398 R ABC transporter substrate-binding protein complement(896502..897398) Agrobacterium vitis S4 7387145 YP_002548762.1 CDS Avi_1063 NC_011989.1 897414 898286 R ABC transporter permease complement(897414..898286) Agrobacterium vitis S4 7387146 YP_002548763.1 CDS Avi_1065 NC_011989.1 898283 899080 R ABC transporter ATPase complement(898283..899080) Agrobacterium vitis S4 7387147 YP_002548764.1 CDS Avi_1067 NC_011989.1 899400 899885 R peroxiredoxin complement(899400..899885) Agrobacterium vitis S4 7387148 YP_002548765.1 CDS Avi_1068 NC_011989.1 899956 900837 R hypothetical protein complement(899956..900837) Agrobacterium vitis S4 7387149 YP_002548766.1 CDS Avi_1069 NC_011989.1 901079 901684 D hypothetical protein 901079..901684 Agrobacterium vitis S4 7387150 YP_002548767.1 CDS Avi_1070 NC_011989.1 901685 902617 R hypothetical protein complement(901685..902617) Agrobacterium vitis S4 7387151 YP_002548768.1 CDS Avi_1071 NC_011989.1 902767 903450 D transcriptional regulator ArsR family 902767..903450 Agrobacterium vitis S4 7387152 YP_002548769.1 CDS Avi_1072 NC_011989.1 903491 906448 R hypothetical protein complement(903491..906448) Agrobacterium vitis S4 7387153 YP_002548770.1 CDS rimJ NC_011989.1 906445 907059 R ribosomal-protein (S5)-alanine N-acetyltransferase complement(906445..907059) Agrobacterium vitis S4 7387154 YP_002548771.1 CDS Avi_1074 NC_011989.1 907186 908490 R peptidase family M16 complement(907186..908490) Agrobacterium vitis S4 7387155 YP_002548772.1 CDS thrC NC_011989.1 908511 909818 R threonine synthase complement(908511..909818) Agrobacterium vitis S4 7387156 YP_002548773.1 CDS Avi_1078 NC_011989.1 910172 910843 D hypothetical protein 910172..910843 Agrobacterium vitis S4 7387157 YP_002548774.1 CDS Avi_1079 NC_011989.1 910891 911817 D hypothetical protein 910891..911817 Agrobacterium vitis S4 7387158 YP_002548775.1 CDS Avi_1080 NC_011989.1 911855 912544 R hypothetical protein complement(911855..912544) Agrobacterium vitis S4 7387159 YP_002548776.1 CDS Avi_1081 NC_011989.1 912699 913367 D GntR family transcriptional regulator 912699..913367 Agrobacterium vitis S4 7389147 YP_002548777.1 CDS Avi_1083 NC_011989.1 913473 913904 D hypothetical protein 913473..913904 Agrobacterium vitis S4 7386165 YP_002548778.1 CDS ccrM NC_011989.1 914089 915222 D cell cycle regulated site-specific DNA-methyltransferase 914089..915222 Agrobacterium vitis S4 7386166 YP_002548779.1 CDS Avi_1086 NC_011989.1 915517 917415 D hypothetical protein 915517..917415 Agrobacterium vitis S4 7386167 YP_002548780.1 CDS Avi_1087 NC_011989.1 917495 918103 D hypothetical protein 917495..918103 Agrobacterium vitis S4 7386168 YP_002548781.1 CDS Avi_1088 NC_011989.1 918129 919829 D hypothetical protein 918129..919829 Agrobacterium vitis S4 7386169 YP_002548782.1 CDS Avi_1089 NC_011989.1 919866 920141 R hypothetical protein complement(919866..920141) Agrobacterium vitis S4 7386170 YP_002548783.1 CDS Avi_1090 NC_011989.1 920141 920749 R hydrolase complement(920141..920749) Agrobacterium vitis S4 7386171 YP_002548784.1 CDS mutY NC_011989.1 920753 921919 R A/G-specific adenine glycosylase complement(920753..921919) Agrobacterium vitis S4 7386172 YP_002548785.1 CDS Avi_1091 NC_011989.1 921992 922540 D hypothetical protein 921992..922540 Agrobacterium vitis S4 7386174 YP_002548786.1 CDS Avi_1093 NC_011989.1 922739 923422 D hypothetical protein 922739..923422 Agrobacterium vitis S4 7386173 YP_002548787.1 CDS smc NC_011989.1 923756 927217 D chromosome segregation protein 923756..927217 Agrobacterium vitis S4 7386175 YP_002548788.1 CDS Avi_1096 NC_011989.1 927239 927580 D hypothetical protein 927239..927580 Agrobacterium vitis S4 7386176 YP_002548789.1 CDS Avi_1098 NC_011989.1 927668 928084 D hypothetical protein 927668..928084 Agrobacterium vitis S4 7386177 YP_002548790.1 CDS Avi_1099 NC_011989.1 928359 929621 D MFS permease 928359..929621 Agrobacterium vitis S4 7386178 YP_002548791.1 CDS Avi_1100 NC_011989.1 929673 930392 R hypothetical protein complement(929673..930392) Agrobacterium vitis S4 7386179 YP_002548792.1 CDS Avi_1101 NC_011989.1 930410 930913 R hypothetical protein complement(930410..930913) Agrobacterium vitis S4 7386180 YP_002548793.1 CDS ppdK NC_011989.1 931448 934132 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase 931448..934132 Agrobacterium vitis S4 7386181 YP_002548794.1 CDS Avi_1104 NC_011989.1 934298 935749 D hypothetical protein 934298..935749 Agrobacterium vitis S4 7386182 YP_002548795.1 CDS Avi_1105 NC_011989.1 935847 936890 D hypothetical protein 935847..936890 Agrobacterium vitis S4 7386183 YP_002548796.1 CDS Avi_1106 NC_011989.1 936897 937817 R LysR family transcriptional regulator complement(936897..937817) Agrobacterium vitis S4 7386184 YP_002548797.1 CDS Avi_1108 NC_011989.1 937962 938720 D hypothetical protein 937962..938720 Agrobacterium vitis S4 7386185 YP_002548798.1 CDS rhtB NC_011989.1 938781 939410 D RhtB family transporter 938781..939410 Agrobacterium vitis S4 7386186 YP_002548799.1 CDS thrH NC_011989.1 939407 940078 D catalyzes the formation of serine from phosphoserine; also has phosphoserine:homoserine phosphotransferase activity; phosphoserine phosphatase 939407..940078 Agrobacterium vitis S4 7386187 YP_002548800.1 CDS rspE NC_011989.1 940216 941604 R bacteriocin ABC transporter permease complement(940216..941604) Agrobacterium vitis S4 7386188 YP_002548801.1 CDS prsD NC_011989.1 941615 943411 R rhiziobicin secretion complement(941615..943411) Agrobacterium vitis S4 7386189 YP_002548802.1 CDS Avi_1115 NC_011989.1 944270 944686 D hypothetical protein 944270..944686 Agrobacterium vitis S4 7387182 YP_002548803.1 CDS mcpA NC_011989.1 945192 947165 D methyl-accepting chemotaxis protein 945192..947165 Agrobacterium vitis S4 7386191 YP_002548804.1 CDS cysH NC_011989.1 947609 948358 D phosphoadenosine phosphosulfate reductase 947609..948358 Agrobacterium vitis S4 7386192 YP_002548805.1 CDS cysD NC_011989.1 948522 949472 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase 948522..949472 Agrobacterium vitis S4 7386193 YP_002548806.1 CDS cysN NC_011989.1 949474 951012 D may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ; sulfate adenylyltransferase 949474..951012 Agrobacterium vitis S4 7386194 YP_002548807.1 CDS Avi_1123 NC_011989.1 951185 952174 R amidohydrolase complement(951185..952174) Agrobacterium vitis S4 7386195 YP_002548808.1 CDS cytR NC_011989.1 952540 953571 R LacI family transcriptional regulator complement(952540..953571) Agrobacterium vitis S4 7386196 YP_002548809.1 CDS Avi_1126 NC_011989.1 954444 955343 D hypothetical protein 954444..955343 Agrobacterium vitis S4 7386197 YP_002548810.1 CDS Avi_1127 NC_011989.1 955384 956241 R metallo-beta-lactamase superfamily protein complement(955384..956241) Agrobacterium vitis S4 7386198 YP_002548811.1 CDS Avi_1128 NC_011989.1 956364 956660 R hypothetical protein complement(956364..956660) Agrobacterium vitis S4 7386199 YP_002548812.1 CDS pfpI NC_011989.1 956802 957362 R proteinase complement(956802..957362) Agrobacterium vitis S4 7386200 YP_002548813.1 CDS Avi_1133 NC_011989.1 958086 958952 D hypothetical protein 958086..958952 Agrobacterium vitis S4 7387999 YP_002548814.1 CDS Avi_1135 NC_011989.1 958980 959390 R hypothetical protein complement(958980..959390) Agrobacterium vitis S4 7386202 YP_002548815.1 CDS Avi_1136 NC_011989.1 959381 960829 R hypothetical protein complement(959381..960829) Agrobacterium vitis S4 7386203 YP_002548816.1 CDS fla NC_011989.1 961465 962430 D flagellin 961465..962430 Agrobacterium vitis S4 7386204 YP_002548817.1 CDS Avi_1139 NC_011989.1 962434 963756 R chloride channel protein complement(962434..963756) Agrobacterium vitis S4 7386205 YP_002548818.1 CDS Avi_1140 NC_011989.1 964066 965355 D hypothetical protein 964066..965355 Agrobacterium vitis S4 7386206 YP_002548819.1 CDS Avi_1141 NC_011989.1 965428 965640 D hypothetical protein 965428..965640 Agrobacterium vitis S4 7386207 YP_002548820.1 CDS Avi_1142 NC_011989.1 965634 965999 D nucleic acid-binding protein 965634..965999 Agrobacterium vitis S4 7386208 YP_002548821.1 CDS betA NC_011989.1 966004 967659 R catalyzes the oxidation of choline to betaine aldehyde and betain aldehyde to glycine betaine; choline dehydrogenase complement(966004..967659) Agrobacterium vitis S4 7386209 YP_002548822.1 CDS Avi_1146 NC_011989.1 967743 968084 D hypothetical protein 967743..968084 Agrobacterium vitis S4 7386210 YP_002548823.1 CDS betB NC_011989.1 968092 969558 R catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase complement(968092..969558) Agrobacterium vitis S4 7386211 YP_002548824.1 CDS Avi_1148 NC_011989.1 969555 970196 R glutathione S-transferase complement(969555..970196) Agrobacterium vitis S4 7386212 YP_002548825.1 CDS betC NC_011989.1 970199 971689 R choline sulfatase complement(970199..971689) Agrobacterium vitis S4 7386213 YP_002548826.1 CDS Avi_1151 NC_011989.1 971713 972261 R TetR family transcriptional regulator complement(971713..972261) Agrobacterium vitis S4 7386214 YP_002548827.1 CDS Avi_1154 NC_011989.1 972549 974360 D hypothetical protein 972549..974360 Agrobacterium vitis S4 7386215 YP_002548828.1 CDS qor NC_011989.1 975478 976647 D quinone oxidoreductase 975478..976647 Agrobacterium vitis S4 7386216 YP_002548829.1 CDS Avi_1157 NC_011989.1 976771 977142 D transposase 976771..977142 Agrobacterium vitis S4 7386217 YP_002548830.1 CDS Avi_1158 NC_011989.1 977118 977534 D transposase 977118..977534 Agrobacterium vitis S4 7386218 YP_002548831.1 CDS mcpA NC_011989.1 977756 979771 D methyl-accepting chemotaxis protein 977756..979771 Agrobacterium vitis S4 7386219 YP_002548832.1 CDS Avi_1160 NC_011989.1 980307 982199 D hypothetical protein 980307..982199 Agrobacterium vitis S4 7386220 YP_002548833.1 CDS Avi_1161 NC_011989.1 982186 984099 D hypothetical protein 982186..984099 Agrobacterium vitis S4 7386221 YP_002548834.1 CDS Avi_1162 NC_011989.1 984228 986129 D hypothetical protein 984228..986129 Agrobacterium vitis S4 7386222 YP_002548835.1 CDS Avi_1163 NC_011989.1 986234 987241 D hypothetical protein 986234..987241 Agrobacterium vitis S4 7386223 YP_002548836.1 CDS Avi_1164 NC_011989.1 987272 988027 R transcriptional regulator DeoR family complement(987272..988027) Agrobacterium vitis S4 7386224 YP_002548837.1 CDS Avi_1165 NC_011989.1 988099 988500 D hypothetical protein 988099..988500 Agrobacterium vitis S4 7386225 YP_002548838.1 CDS Avi_1166 NC_011989.1 989133 989762 R hypothetical protein complement(989133..989762) Agrobacterium vitis S4 7386226 YP_002548839.1 CDS Avi_1167 NC_011989.1 989874 991547 R hypothetical protein complement(989874..991547) Agrobacterium vitis S4 7386227 YP_002548840.1 CDS Avi_1168 NC_011989.1 991751 992251 R hypothetical protein complement(991751..992251) Agrobacterium vitis S4 7386228 YP_002548841.1 CDS gst NC_011989.1 992255 992908 R glutathione S-transferase complement(992255..992908) Agrobacterium vitis S4 7386229 YP_002548842.1 CDS Avi_1172 NC_011989.1 993269 993793 D hypothetical protein 993269..993793 Agrobacterium vitis S4 7386230 YP_002548843.1 CDS ggt NC_011989.1 993932 995698 R gamma-glutamyltransferase complement(993932..995698) Agrobacterium vitis S4 7386231 YP_002548844.1 CDS Avi_1175 NC_011989.1 995951 996409 R transcriptional regulator MarR family complement(995951..996409) Agrobacterium vitis S4 7386232 YP_002548845.1 CDS Avi_1177 NC_011989.1 996724 998286 D MFS permease 996724..998286 Agrobacterium vitis S4 7386233 YP_002548846.1 CDS Avi_1178 NC_011989.1 998308 999375 D hypothetical protein 998308..999375 Agrobacterium vitis S4 7386234 YP_002548847.1 CDS Avi_1179 NC_011989.1 999404 1000036 R nitroreductase complement(999404..1000036) Agrobacterium vitis S4 7386235 YP_002548848.1 CDS Avi_1180 NC_011989.1 1000202 1001092 R hypothetical protein complement(1000202..1001092) Agrobacterium vitis S4 7386236 YP_002548849.1 CDS Avi_1183 NC_011989.1 1001875 1002456 R hypothetical protein complement(1001875..1002456) Agrobacterium vitis S4 7386237 YP_002548850.1 CDS Avi_1184 NC_011989.1 1002515 1003069 R hypothetical protein complement(1002515..1003069) Agrobacterium vitis S4 7386238 YP_002548851.1 CDS Avi_1186 NC_011989.1 1003348 1004112 D hypothetical protein 1003348..1004112 Agrobacterium vitis S4 7386239 YP_002548852.1 CDS Avi_1187 NC_011989.1 1004264 1005019 D hypothetical protein 1004264..1005019 Agrobacterium vitis S4 7386240 YP_002548853.1 CDS Avi_1189 NC_011989.1 1005114 1005590 R transcriptional regulator MarR family complement(1005114..1005590) Agrobacterium vitis S4 7386241 YP_002548854.1 CDS Avi_1190 NC_011989.1 1005742 1006164 D organic hydroperoxide resistance protein 1005742..1006164 Agrobacterium vitis S4 7386242 YP_002548855.1 CDS setA NC_011989.1 1006396 1007733 R MFS permease complement(1006396..1007733) Agrobacterium vitis S4 7386243 YP_002548856.1 CDS Avi_1193 NC_011989.1 1007844 1009019 D sensory transduction regulatory protein 1007844..1009019 Agrobacterium vitis S4 7386244 YP_002548857.1 CDS Avi_1195 NC_011989.1 1009190 1009582 D Two component sensor kinase/response regulator hybrid protein 1009190..1009582 Agrobacterium vitis S4 7386245 YP_002548858.1 CDS Avi_1197 NC_011989.1 1009575 1010108 R hypothetical protein complement(1009575..1010108) Agrobacterium vitis S4 7386246 YP_002548859.1 CDS Avi_1199 NC_011989.1 1010300 1010836 R pyrE protein complement(1010300..1010836) Agrobacterium vitis S4 7388505 YP_002548860.1 CDS Avi_1200 NC_011989.1 1011002 1013188 R methyl-accepting chemotaxis protein complement(1011002..1013188) Agrobacterium vitis S4 7387593 YP_002548861.1 CDS Avi_1201 NC_011989.1 1013397 1015583 R methyl-accepting chemotaxis protein complement(1013397..1015583) Agrobacterium vitis S4 7387594 YP_002548862.1 CDS Avi_1202 NC_011989.1 1015794 1016183 R hypothetical protein complement(1015794..1016183) Agrobacterium vitis S4 7387595 YP_002548863.1 CDS Avi_1204 NC_011989.1 1016473 1018056 D hypothetical protein 1016473..1018056 Agrobacterium vitis S4 7387596 YP_002548864.1 CDS Avi_1205 NC_011989.1 1018604 1019881 D Integral membrane transporter protein 1018604..1019881 Agrobacterium vitis S4 7387597 YP_002548865.1 CDS pykA NC_011989.1 1019915 1021318 D pyruvate kinase 1019915..1021318 Agrobacterium vitis S4 7387598 YP_002548866.1 CDS Avi_1207 NC_011989.1 1021318 1022250 D permease 1021318..1022250 Agrobacterium vitis S4 7387599 YP_002548867.1 CDS mcpC NC_011989.1 1022276 1024090 R methyl-accepting chemotaxis protein complement(1022276..1024090) Agrobacterium vitis S4 7387600 YP_002548868.1 CDS Avi_1209 NC_011989.1 1024432 1025304 D undecaprenol kinase 1024432..1025304 Agrobacterium vitis S4 7387601 YP_002548869.1 CDS Avi_1210 NC_011989.1 1025330 1026115 R ABC transporter complement(1025330..1026115) Agrobacterium vitis S4 7387602 YP_002548870.1 CDS xylH NC_011989.1 1026133 1027446 R xylose ABC transporter permease complement(1026133..1027446) Agrobacterium vitis S4 7387603 YP_002548871.1 CDS xylF NC_011989.1 1027898 1028938 R ABC transporter substrate binding protein (xylose) complement(1027898..1028938) Agrobacterium vitis S4 7387604 YP_002548872.1 CDS Avi_1214 NC_011989.1 1029338 1030540 D transcriptional regulator 1029338..1030540 Agrobacterium vitis S4 7387605 YP_002548873.1 CDS Avi_1215 NC_011989.1 1030572 1030934 R hypothetical protein complement(1030572..1030934) Agrobacterium vitis S4 7387606 YP_002548874.1 CDS Avi_1217 NC_011989.1 1031420 1031911 R hypothetical protein complement(1031420..1031911) Agrobacterium vitis S4 7387607 YP_002548875.1 CDS Avi_1218 NC_011989.1 1032105 1032860 R ABC transporter complement(1032105..1032860) Agrobacterium vitis S4 7387608 YP_002548876.1 CDS Avi_1219 NC_011989.1 1032854 1033936 R Fe3+ ABC transporter permease complement(1032854..1033936) Agrobacterium vitis S4 7387609 YP_002548877.1 CDS Avi_1220 NC_011989.1 1033933 1035084 R ABC transporter substrate binding protein (iron) complement(1033933..1035084) Agrobacterium vitis S4 7387610 YP_002548878.1 CDS Avi_1221 NC_011989.1 1035248 1036468 R ABC transporter substrate binding protein (iron) complement(1035248..1036468) Agrobacterium vitis S4 7387611 YP_002548879.1 CDS Avi_1222 NC_011989.1 1036563 1037381 D methyltransferase 1036563..1037381 Agrobacterium vitis S4 7387612 YP_002548880.1 CDS Avi_1223 NC_011989.1 1037535 1038449 D LysR family transcriptional regulator 1037535..1038449 Agrobacterium vitis S4 7387613 YP_002548881.1 CDS Avi_1224 NC_011989.1 1038470 1039717 R MFS permease complement(1038470..1039717) Agrobacterium vitis S4 7387614 YP_002548882.1 CDS Avi_1225 NC_011989.1 1039707 1040855 R peptide synthetase complement(1039707..1040855) Agrobacterium vitis S4 7387615 YP_002548883.1 CDS Avi_1227 NC_011989.1 1041338 1041787 D acetyltransferase 1041338..1041787 Agrobacterium vitis S4 7387616 YP_002548884.1 CDS Avi_1231 NC_011989.1 1042375 1042761 D hypothetical protein 1042375..1042761 Agrobacterium vitis S4 7387617 YP_002548885.1 CDS Avi_1232 NC_011989.1 1042733 1043035 D transcriptional regulator protein 1042733..1043035 Agrobacterium vitis S4 7387618 YP_002548886.1 CDS Avi_1233 NC_011989.1 1043532 1044023 D hypothetical protein 1043532..1044023 Agrobacterium vitis S4 7387619 YP_002548887.1 CDS Avi_1234 NC_011989.1 1044069 1044983 R hypothetical protein complement(1044069..1044983) Agrobacterium vitis S4 7387620 YP_002548888.1 CDS Avi_1236 NC_011989.1 1045054 1045527 R cytochrome C-556 complement(1045054..1045527) Agrobacterium vitis S4 7387621 YP_002548889.1 CDS Avi_1238 NC_011989.1 1045701 1046561 R hypothetical protein complement(1045701..1046561) Agrobacterium vitis S4 7387622 YP_002548890.1 CDS Avi_1239 NC_011989.1 1046666 1047181 D acetyltransferase 1046666..1047181 Agrobacterium vitis S4 7387623 YP_002548891.1 CDS acpD NC_011989.1 1048194 1048814 R ACP phosphodiesterase complement(1048194..1048814) Agrobacterium vitis S4 7387624 YP_002548892.1 CDS Avi_1242 NC_011989.1 1048855 1049334 D hypothetical protein 1048855..1049334 Agrobacterium vitis S4 7387625 YP_002548893.1 CDS Avi_1244 NC_011989.1 1049321 1049773 R acetyltransferase complement(1049321..1049773) Agrobacterium vitis S4 7387626 YP_002548894.1 CDS sodB NC_011989.1 1049886 1050488 R superoxide dismutase complement(1049886..1050488) Agrobacterium vitis S4 7387987 YP_002548895.1 CDS Avi_1247 NC_011989.1 1050752 1051105 R hypothetical protein complement(1050752..1051105) Agrobacterium vitis S4 7387628 YP_002548896.1 CDS Avi_1248 NC_011989.1 1051251 1052051 D hypothetical protein 1051251..1052051 Agrobacterium vitis S4 7387629 YP_002548897.1 CDS Avi_1249 NC_011989.1 1052222 1053157 D GGDEF family protein 1052222..1053157 Agrobacterium vitis S4 7387630 YP_002548898.1 CDS ilvE NC_011989.1 1053183 1054064 R aminotransferase complement(1053183..1054064) Agrobacterium vitis S4 7387631 YP_002548899.1 CDS Avi_1253 NC_011989.1 1054360 1056537 D Polyphenol oxidase 1054360..1056537 Agrobacterium vitis S4 7387632 YP_002548900.1 CDS Avi_1256 NC_011989.1 1056968 1057282 D hypothetical protein 1056968..1057282 Agrobacterium vitis S4 7387633 YP_002548901.1 CDS Avi_1257 NC_011989.1 1057491 1057964 D hypothetical protein 1057491..1057964 Agrobacterium vitis S4 7387634 YP_002548902.1 CDS ptrB NC_011989.1 1058071 1060200 R protease II complement(1058071..1060200) Agrobacterium vitis S4 7387635 YP_002548903.1 CDS Avi_1259 NC_011989.1 1060423 1060812 D hypothetical protein 1060423..1060812 Agrobacterium vitis S4 7387636 YP_002548904.1 CDS Avi_1260 NC_011989.1 1060858 1061958 R hypothetical protein complement(1060858..1061958) Agrobacterium vitis S4 7387637 YP_002548905.1 CDS Avi_1261 NC_011989.1 1062615 1064393 D xanthan lyase 1062615..1064393 Agrobacterium vitis S4 7387638 YP_002548906.1 CDS Avi_1263 NC_011989.1 1064557 1065336 D hypothetical protein 1064557..1065336 Agrobacterium vitis S4 7387639 YP_002548907.1 CDS Avi_1264 NC_011989.1 1065340 1066224 R hypothetical protein complement(1065340..1066224) Agrobacterium vitis S4 7387640 YP_002548908.1 CDS Avi_1265 NC_011989.1 1066481 1066891 D hypothetical protein 1066481..1066891 Agrobacterium vitis S4 7387641 YP_002548909.1 CDS dskA NC_011989.1 1066932 1067249 D dnaK suppressor protein 1066932..1067249 Agrobacterium vitis S4 7387642 YP_002548910.1 CDS Avi_1267 NC_011989.1 1067277 1067654 R hypothetical protein complement(1067277..1067654) Agrobacterium vitis S4 7387643 YP_002548911.1 CDS Avi_1271 NC_011989.1 1068026 1068676 D Hemolysin III 1068026..1068676 Agrobacterium vitis S4 7387644 YP_002548912.1 CDS Avi_1273 NC_011989.1 1068777 1069508 R cAMP-binding protein complement(1068777..1069508) Agrobacterium vitis S4 7387645 YP_002548913.1 CDS Avi_1274 NC_011989.1 1070084 1070590 D Phosphinothricin acetyltransferase 1070084..1070590 Agrobacterium vitis S4 7387646 YP_002548914.1 CDS Avi_1275 NC_011989.1 1070591 1071328 R hypothetical protein complement(1070591..1071328) Agrobacterium vitis S4 7387647 YP_002548915.1 CDS Avi_1276 NC_011989.1 1071419 1072561 D AraC family transcriptional regulator 1071419..1072561 Agrobacterium vitis S4 7387648 YP_002548916.1 CDS ros NC_011989.1 1072804 1073235 R transcriptional regulator complement(1072804..1073235) Agrobacterium vitis S4 7387649 YP_002548917.1 CDS mnhG NC_011989.1 1073649 1074014 R subunit G of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit G complement(1073649..1074014) Agrobacterium vitis S4 7387650 YP_002548918.1 CDS mnhF NC_011989.1 1074014 1074427 R Na+/H+ antiporter complement(1074014..1074427) Agrobacterium vitis S4 7387651 YP_002548919.1 CDS mnhE NC_011989.1 1074439 1074912 R subunit E of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit E complement(1074439..1074912) Agrobacterium vitis S4 7387652 YP_002548920.1 CDS mnhD NC_011989.1 1074909 1076513 R subunit D of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; contains an oxidoreductase domain; catalyzes the transfer of electrons from NADH to ubiquinone; in S. meliloti it is known to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit D complement(1074909..1076513) Agrobacterium vitis S4 7387653 YP_002548921.1 CDS mnhC NC_011989.1 1076564 1076941 R subunit C of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; putative monovalent cation/H+ antiporter subunit C complement(1076564..1076941) Agrobacterium vitis S4 7387654 YP_002548922.1 CDS mnhB NC_011989.1 1076941 1077360 R subunit B of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in the case of S. meliloti it was proved to be involved specifically with K+ transport; putative monovalent cation/H+ antiporter subunit B complement(1076941..1077360) Agrobacterium vitis S4 7387655 YP_002548923.1 CDS mnhA NC_011989.1 1077357 1079735 R subunit A of antiporter complex involved in resistance to high concentrations of Na+, K+, Li+ and/or alkali; in S. meliloti it is known to be involved with K+; putative monovalent cation/H+ antiporter subunit A complement(1077357..1079735) Agrobacterium vitis S4 7387656 YP_002548924.1 CDS Avi_1286 NC_011989.1 1080161 1080586 D this stereospecific enzymes reduces the R isomer of methionine sulfoxide while MsrA reduces the S form; provides protection against oxidative stress; methionine sulfoxide reductase B 1080161..1080586 Agrobacterium vitis S4 7387657 YP_002548925.1 CDS Avi_1287 NC_011989.1 1080909 1081274 D hypothetical protein 1080909..1081274 Agrobacterium vitis S4 7387658 YP_002548926.1 CDS Avi_1289 NC_011989.1 1081258 1082109 D hypothetical protein 1081258..1082109 Agrobacterium vitis S4 7387659 YP_002548927.1 CDS Avi_1291 NC_011989.1 1082194 1082856 R hypothetical protein complement(1082194..1082856) Agrobacterium vitis S4 7387660 YP_002548928.1 CDS Avi_1295 NC_011989.1 1083647 1084864 D efflux protein 1083647..1084864 Agrobacterium vitis S4 7387661 YP_002548929.1 CDS Avi_1296 NC_011989.1 1084868 1086811 D ABC transporter ATPase 1084868..1086811 Agrobacterium vitis S4 7387662 YP_002548930.1 CDS Avi_1297 NC_011989.1 1086912 1088738 R acylase and diesterase complement(1086912..1088738) Agrobacterium vitis S4 7387663 YP_002548931.1 CDS Avi_1298 NC_011989.1 1088907 1089614 D TetR family transcriptional regulator 1088907..1089614 Agrobacterium vitis S4 7387664 YP_002548932.1 CDS Avi_1301 NC_011989.1 1090098 1091606 R Growth regulating protein complement(1090098..1091606) Agrobacterium vitis S4 7387665 YP_002548933.1 CDS Avi_1302 NC_011989.1 1092089 1092508 R hypothetical protein complement(1092089..1092508) Agrobacterium vitis S4 7387666 YP_002548934.1 CDS Avi_1303 NC_011989.1 1092633 1093097 R hypothetical protein complement(1092633..1093097) Agrobacterium vitis S4 7387667 YP_002548935.1 CDS Avi_1305 NC_011989.1 1093529 1095328 D two component sensor kinase 1093529..1095328 Agrobacterium vitis S4 7387668 YP_002548936.1 CDS Avi_1306 NC_011989.1 1095300 1096424 D hypothetical protein 1095300..1096424 Agrobacterium vitis S4 7387669 YP_002548937.1 CDS Avi_1307 NC_011989.1 1096491 1097822 R hypothetical protein complement(1096491..1097822) Agrobacterium vitis S4 7387670 YP_002548938.1 CDS Avi_1308 NC_011989.1 1097824 1100934 R AcrB/AcrD/AcrF family protein complement(1097824..1100934) Agrobacterium vitis S4 7387671 YP_002548939.1 CDS Avi_1309 NC_011989.1 1100931 1102025 R efflux protein complement(1100931..1102025) Agrobacterium vitis S4 7387672 YP_002548940.1 CDS Avi_1311 NC_011989.1 1102027 1103100 R HlyD family secretion protein complement(1102027..1103100) Agrobacterium vitis S4 7387673 YP_002548941.1 CDS Avi_1313 NC_011989.1 1103274 1103915 D TetR family transcriptional regulator 1103274..1103915 Agrobacterium vitis S4 7387674 YP_002548942.1 CDS Avi_1314 NC_011989.1 1103974 1104330 D hypothetical protein 1103974..1104330 Agrobacterium vitis S4 7388923 YP_002548943.1 CDS Avi_1315 NC_011989.1 1104402 1105448 R hypothetical protein complement(1104402..1105448) Agrobacterium vitis S4 7389065 YP_002548944.1 CDS Avi_1318 NC_011989.1 1105862 1106062 D hypothetical protein 1105862..1106062 Agrobacterium vitis S4 7389066 YP_002548945.1 CDS Avi_1319 NC_011989.1 1106704 1107129 D exopolysaccharide production repressor protein 1106704..1107129 Agrobacterium vitis S4 7389067 YP_002548946.1 CDS Avi_1320 NC_011989.1 1107271 1108368 R transcriptional regulator complement(1107271..1108368) Agrobacterium vitis S4 7389068 YP_002548947.1 CDS Avi_1321 NC_011989.1 1108596 1109147 R hypothetical protein complement(1108596..1109147) Agrobacterium vitis S4 7389069 YP_002548948.1 CDS Avi_1322 NC_011989.1 1109140 1109787 R hypothetical protein complement(1109140..1109787) Agrobacterium vitis S4 7389070 YP_002548949.1 CDS Avi_1323 NC_011989.1 1109837 1111960 R penicillin binding protein complement(1109837..1111960) Agrobacterium vitis S4 7389071 YP_002548950.1 CDS Avi_1324 NC_011989.1 1112202 1112681 D hypothetical protein 1112202..1112681 Agrobacterium vitis S4 7389072 YP_002548951.1 CDS Avi_1325 NC_011989.1 1112920 1114017 R hypothetical protein complement(1112920..1114017) Agrobacterium vitis S4 7389073 YP_002548952.1 CDS Avi_1327 NC_011989.1 1114516 1115568 D hypothetical protein 1114516..1115568 Agrobacterium vitis S4 7389075 YP_002548953.1 CDS cueR NC_011989.1 1115984 1116412 D Cu(I)-responsive transcriptional regulator 1115984..1116412 Agrobacterium vitis S4 7389076 YP_002548954.1 CDS Avi_1329 NC_011989.1 1117080 1117622 D hypothetical protein 1117080..1117622 Agrobacterium vitis S4 7389077 YP_002548955.1 CDS Avi_1330 NC_011989.1 1117734 1119113 D large terminase 1117734..1119113 Agrobacterium vitis S4 7389078 YP_002548956.1 CDS Avi_1332 NC_011989.1 1119497 1120105 D hypothetical protein 1119497..1120105 Agrobacterium vitis S4 7389079 YP_002548957.1 CDS Avi_1334 NC_011989.1 1120420 1121622 D phage portal protein HK97 family 1120420..1121622 Agrobacterium vitis S4 7389080 YP_002548958.1 CDS Avi_1335 NC_011989.1 1121812 1122129 D hypothetical protein 1121812..1122129 Agrobacterium vitis S4 7389081 YP_002548959.1 CDS Avi_1337 NC_011989.1 1122178 1122747 D phage prohead protease HK97 family 1122178..1122747 Agrobacterium vitis S4 7389082 YP_002548960.1 CDS Avi_1338 NC_011989.1 1122759 1124021 D phage major capsid protein HK97 family 1122759..1124021 Agrobacterium vitis S4 7389083 YP_002548961.1 CDS Avi_1339 NC_011989.1 1124126 1124695 D hypothetical protein 1124126..1124695 Agrobacterium vitis S4 7389084 YP_002548962.1 CDS Avi_1340 NC_011989.1 1124710 1125033 D hypothetical protein 1124710..1125033 Agrobacterium vitis S4 7389085 YP_002548963.1 CDS Avi_1343 NC_011989.1 1125187 1125585 D hypothetical protein 1125187..1125585 Agrobacterium vitis S4 7389086 YP_002548964.1 CDS Avi_1344 NC_011989.1 1125575 1126819 R MFS permease complement(1125575..1126819) Agrobacterium vitis S4 7389087 YP_002548965.1 CDS Avi_1345 NC_011989.1 1127172 1127582 D hypothetical protein 1127172..1127582 Agrobacterium vitis S4 7389088 YP_002548966.1 CDS Avi_1346 NC_011989.1 1127579 1127998 D hypothetical protein 1127579..1127998 Agrobacterium vitis S4 7389089 YP_002548967.1 CDS Avi_1347 NC_011989.1 1128058 1128246 D gene transfer agent (GTA) orfg10 1128058..1128246 Agrobacterium vitis S4 7389090 YP_002548968.1 CDS Avi_1349 NC_011989.1 1128257 1128856 D hypothetical protein 1128257..1128856 Agrobacterium vitis S4 7389091 YP_002548969.1 CDS Avi_1350 NC_011989.1 1128866 1129501 D hypothetical protein 1128866..1129501 Agrobacterium vitis S4 7389092 YP_002548970.1 CDS Avi_1351 NC_011989.1 1129498 1130388 D hypothetical protein 1129498..1130388 Agrobacterium vitis S4 7389093 YP_002548971.1 CDS Avi_1352 NC_011989.1 1130363 1130731 D hypothetical protein 1130363..1130731 Agrobacterium vitis S4 7389094 YP_002548972.1 CDS Avi_1354 NC_011989.1 1130903 1134694 D gene transfer agent (GTA) orfg15 1130903..1134694 Agrobacterium vitis S4 7389095 YP_002548973.1 CDS Avi_1355 NC_011989.1 1134738 1134977 D hypothetical protein 1134738..1134977 Agrobacterium vitis S4 7389096 YP_002548974.1 CDS Avi_1357 NC_011989.1 1135157 1135525 D hypothetical protein 1135157..1135525 Agrobacterium vitis S4 7389097 YP_002548975.1 CDS phoP NC_011989.1 1135659 1136333 D two component response regulator 1135659..1136333 Agrobacterium vitis S4 7389098 YP_002548976.1 CDS popQ NC_011989.1 1136334 1137749 D two component sensor kinase 1136334..1137749 Agrobacterium vitis S4 7389099 YP_002548977.1 CDS lipA NC_011989.1 1137981 1138400 D lipoic acid synthetase 1137981..1138400 Agrobacterium vitis S4 7389100 YP_002548978.1 CDS cycH NC_011989.1 1138638 1139786 D cycH protein 1138638..1139786 Agrobacterium vitis S4 7389101 YP_002548979.1 CDS cycJ NC_011989.1 1139783 1140232 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 1139783..1140232 Agrobacterium vitis S4 7389102 YP_002548980.1 CDS ccmF NC_011989.1 1140229 1142232 D cytochrome c-type biogenesis protein CcmF 1140229..1142232 Agrobacterium vitis S4 7389103 YP_002548981.1 CDS cycL NC_011989.1 1142229 1142687 D cycL protein 1142229..1142687 Agrobacterium vitis S4 7389104 YP_002548982.1 CDS dop NC_011989.1 1143352 1144827 D serine protease DO-like protease 1143352..1144827 Agrobacterium vitis S4 7389105 YP_002548983.1 CDS ragA NC_011989.1 1144917 1145675 D two component response regulator 1144917..1145675 Agrobacterium vitis S4 7389106 YP_002548984.1 CDS ragB NC_011989.1 1145685 1147091 D two component sensor kinase 1145685..1147091 Agrobacterium vitis S4 7389107 YP_002548985.1 CDS glnE NC_011989.1 1147159 1150170 D catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 1147159..1150170 Agrobacterium vitis S4 7389108 YP_002548986.1 CDS pleC NC_011989.1 1150143 1152515 R two component sensor kinase complement(1150143..1152515) Agrobacterium vitis S4 7389109 YP_002548987.1 CDS pepN NC_011989.1 1152801 1155479 R aminopeptidase N complement(1152801..1155479) Agrobacterium vitis S4 7389110 YP_002548988.1 CDS mcpA NC_011989.1 1155804 1156916 R methyl-accepting chemotaxis protein complement(1155804..1156916) Agrobacterium vitis S4 7389111 YP_002548989.1 CDS Avi_1379 NC_011989.1 1157341 1158294 D permease 1157341..1158294 Agrobacterium vitis S4 7389112 YP_002548990.1 CDS Avi_1380 NC_011989.1 1158306 1159538 R MFS permease complement(1158306..1159538) Agrobacterium vitis S4 7389113 YP_002548991.1 CDS Avi_1381 NC_011989.1 1160177 1161106 D hypothetical protein 1160177..1161106 Agrobacterium vitis S4 7389114 YP_002548992.1 CDS Avi_1384 NC_011989.1 1161708 1162616 R DNA polymerase complement(1161708..1162616) Agrobacterium vitis S4 7389115 YP_002548993.1 CDS Avi_1385 NC_011989.1 1162675 1163967 R molecular chaperone Hsp70 family complement(1162675..1163967) Agrobacterium vitis S4 7389116 YP_002548994.1 CDS Avi_1387 NC_011989.1 1164202 1164405 R hypothetical protein complement(1164202..1164405) Agrobacterium vitis S4 7389117 YP_002548995.1 CDS Avi_1388 NC_011989.1 1164420 1167551 R AcrB/AcrD/AcrF family protein complement(1164420..1167551) Agrobacterium vitis S4 7389118 YP_002548996.1 CDS Avi_1389 NC_011989.1 1167548 1168855 R HlyD family secretion protein complement(1167548..1168855) Agrobacterium vitis S4 7389119 YP_002548997.1 CDS Avi_1391 NC_011989.1 1169046 1169831 R NAD/NADP dependent oxidoreductase complement(1169046..1169831) Agrobacterium vitis S4 7389120 YP_002548998.1 CDS Avi_1392 NC_011989.1 1170115 1171776 D electrotransfer ubiquinone oxidoreductase 1170115..1171776 Agrobacterium vitis S4 7389121 YP_002548999.1 CDS Avi_1393 NC_011989.1 1172247 1173350 D Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase 1172247..1173350 Agrobacterium vitis S4 7389122 YP_002549000.1 CDS cfa NC_011989.1 1173648 1174940 D cyclopropane-fatty-acyl-phospholipid synthase 1173648..1174940 Agrobacterium vitis S4 7389123 YP_002549001.1 CDS Avi_1396 NC_011989.1 1174953 1175216 R hypothetical protein complement(1174953..1175216) Agrobacterium vitis S4 7389124 YP_002549002.1 CDS Avi_1397 NC_011989.1 1175298 1176167 R hypothetical protein complement(1175298..1176167) Agrobacterium vitis S4 7389125 YP_002549003.1 CDS mgtE NC_011989.1 1176509 1177885 R magnesium transport protein complement(1176509..1177885) Agrobacterium vitis S4 7389126 YP_002549004.1 CDS Avi_1399 NC_011989.1 1178385 1179467 R MFS permease complement(1178385..1179467) Agrobacterium vitis S4 7389127 YP_002549005.1 CDS Avi_1401 NC_011989.1 1180059 1180913 D hypothetical protein 1180059..1180913 Agrobacterium vitis S4 7389128 YP_002549006.1 CDS Avi_1402 NC_011989.1 1180977 1182581 R ABC transporter nucleotide binding/ATPase (oligopeptide) complement(1180977..1182581) Agrobacterium vitis S4 7389129 YP_002549007.1 CDS Avi_1403 NC_011989.1 1182584 1183705 R peptide ABC transporter permease complement(1182584..1183705) Agrobacterium vitis S4 7389130 YP_002549008.1 CDS Avi_1404 NC_011989.1 1183698 1184621 R peptide ABC transporter permease complement(1183698..1184621) Agrobacterium vitis S4 7389131 YP_002549009.1 CDS Avi_1405 NC_011989.1 1184685 1186283 R ABC transporter substrate binding protein (oligopeptide) complement(1184685..1186283) Agrobacterium vitis S4 7389132 YP_002549010.1 CDS glnA NC_011989.1 1186588 1187943 R glutamine synthetase complement(1186588..1187943) Agrobacterium vitis S4 7389133 YP_002549011.1 CDS bioA NC_011989.1 1188069 1189439 D putative aminotransferase 1188069..1189439 Agrobacterium vitis S4 7389134 YP_002549012.1 CDS Avi_1408 NC_011989.1 1189447 1189734 R hypothetical protein complement(1189447..1189734) Agrobacterium vitis S4 7389135 YP_002549013.1 CDS Avi_1409 NC_011989.1 1189737 1190351 R transcriptional regulator protein complement(1189737..1190351) Agrobacterium vitis S4 7389136 YP_002549014.1 CDS Avi_1410 NC_011989.1 1190444 1191970 R hypothetical protein complement(1190444..1191970) Agrobacterium vitis S4 7389137 YP_002549015.1 CDS Avi_1411 NC_011989.1 1191972 1192880 R glycosyltransferase transmembrane protein complement(1191972..1192880) Agrobacterium vitis S4 7389138 YP_002549016.1 CDS Avi_1413 NC_011989.1 1193084 1194055 D hypothetical protein 1193084..1194055 Agrobacterium vitis S4 7389139 YP_002549017.1 CDS amn NC_011989.1 1194079 1195593 R Catalyzes the hydrolysis of AMP to form adenine and ribose 5-phosphate using water as the nucleophile; AMP nucleosidase complement(1194079..1195593) Agrobacterium vitis S4 7389140 YP_002549018.1 CDS Avi_1416 NC_011989.1 1196008 1196700 D glutathione S-transferase 1196008..1196700 Agrobacterium vitis S4 7389141 YP_002549019.1 CDS Avi_1419 NC_011989.1 1196758 1197096 R hypothetical protein complement(1196758..1197096) Agrobacterium vitis S4 7389142 YP_002549020.1 CDS Avi_1420 NC_011989.1 1197626 1197892 D hypothetical protein 1197626..1197892 Agrobacterium vitis S4 7389143 YP_002549021.1 CDS hisC NC_011989.1 1198008 1199081 R catalyzes the formation of histidinol phosphate and 2-oxoglutarate from glutamate and imidazole acetol-phosphate; histidinol-phosphate aminotransferase complement(1198008..1199081) Agrobacterium vitis S4 7389144 YP_002549022.1 CDS Avi_1424 NC_011989.1 1199278 1199691 R hypothetical protein complement(1199278..1199691) Agrobacterium vitis S4 7389145 YP_002549023.1 CDS Avi_1425 NC_011989.1 1199862 1200215 R hypothetical protein complement(1199862..1200215) Agrobacterium vitis S4 7389146 YP_002549024.1 CDS Avi_1426 NC_011989.1 1200503 1201720 D ferredoxin reductase 1200503..1201720 Agrobacterium vitis S4 7386828 YP_002549025.1 CDS Avi_1427 NC_011989.1 1202116 1203150 R outer membrane protein complement(1202116..1203150) Agrobacterium vitis S4 7386412 YP_002549026.1 CDS Avi_1428 NC_011989.1 1203287 1204333 R outer membrane protein complement(1203287..1204333) Agrobacterium vitis S4 7386413 YP_002549027.1 CDS Avi_1430 NC_011989.1 1205272 1206159 R hypothetical protein complement(1205272..1206159) Agrobacterium vitis S4 7388000 YP_002549028.1 CDS Avi_1431 NC_011989.1 1206202 1208331 R soluble lytic transglycosylase complement(1206202..1208331) Agrobacterium vitis S4 7386415 YP_002549029.1 CDS dapA NC_011989.1 1208519 1209403 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1208519..1209403 Agrobacterium vitis S4 7386416 YP_002549030.1 CDS smpB NC_011989.1 1209556 1210032 D binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein 1209556..1210032 Agrobacterium vitis S4 7386417 YP_002549031.1 CDS ada NC_011989.1 1210706 1211779 R methylated-DNA--protein- cysteinemethyltransferase complement(1210706..1211779) Agrobacterium vitis S4 7386418 YP_002549032.1 CDS mcpV NC_011989.1 1211890 1213404 R methyl-accepting chemotaxis protein complement(1211890..1213404) Agrobacterium vitis S4 7386419 YP_002549033.1 CDS Avi_1440 NC_011989.1 1214057 1214635 R hypothetical protein complement(1214057..1214635) Agrobacterium vitis S4 7386420 YP_002549034.1 CDS rpoZ NC_011989.1 1214947 1215345 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1214947..1215345 Agrobacterium vitis S4 7386421 YP_002549035.1 CDS Avi_1443 NC_011989.1 1215504 1217744 D GTP pyrophosphohydrolases/synthetases RelA/SpoT family 1215504..1217744 Agrobacterium vitis S4 7386422 YP_002549036.1 CDS Avi_1445 NC_011989.1 1218046 1218198 D hypothetical protein 1218046..1218198 Agrobacterium vitis S4 7386423 YP_002549037.1 CDS lepB NC_011989.1 1218734 1219477 D signal peptidase I 1218734..1219477 Agrobacterium vitis S4 7386424 YP_002549038.1 CDS rnc NC_011989.1 1219474 1220193 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1219474..1220193 Agrobacterium vitis S4 7386425 YP_002549039.1 CDS era NC_011989.1 1220204 1221187 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1220204..1221187 Agrobacterium vitis S4 7386426 YP_002549040.1 CDS Avi_1451 NC_011989.1 1221200 1222408 R hypothetical protein complement(1221200..1222408) Agrobacterium vitis S4 7386427 YP_002549041.1 CDS recO NC_011989.1 1222547 1223341 D involved in DNA repair and RecFOR pathway recombination; RecFOR proteins displace ssDNA-binding protein and facilitate the production of RecA-coated ssDNA; DNA repair protein RecO 1222547..1223341 Agrobacterium vitis S4 7386428 YP_002549042.1 CDS Avi_1453 NC_011989.1 1223260 1223529 R hypothetical protein complement(1223260..1223529) Agrobacterium vitis S4 7386429 YP_002549043.1 CDS Avi_1456 NC_011989.1 1224054 1224905 R hypothetical protein complement(1224054..1224905) Agrobacterium vitis S4 7386430 YP_002549044.1 CDS Avi_1457 NC_011989.1 1224910 1225611 R hypothetical protein complement(1224910..1225611) Agrobacterium vitis S4 7386431 YP_002549045.1 CDS Avi_1459 NC_011989.1 1225915 1226535 D hypothetical protein 1225915..1226535 Agrobacterium vitis S4 7386432 YP_002549046.1 CDS Avi_1460 NC_011989.1 1226751 1227287 R hypothetical protein complement(1226751..1227287) Agrobacterium vitis S4 7386433 YP_002549047.1 CDS Avi_1461 NC_011989.1 1227284 1227931 R hypothetical protein complement(1227284..1227931) Agrobacterium vitis S4 7386434 YP_002549048.1 CDS gcvT NC_011989.1 1227933 1228772 R glycine cleavage system T protein aminomethyltransferase complement(1227933..1228772) Agrobacterium vitis S4 7386435 YP_002549049.1 CDS Avi_1463 NC_011989.1 1228950 1229726 R hypothetical protein complement(1228950..1229726) Agrobacterium vitis S4 7386436 YP_002549050.1 CDS Avi_1464 NC_011989.1 1229744 1230001 R hypothetical protein complement(1229744..1230001) Agrobacterium vitis S4 7386437 YP_002549051.1 CDS Avi_1465 NC_011989.1 1230101 1230550 R hypothetical protein complement(1230101..1230550) Agrobacterium vitis S4 7386438 YP_002549052.1 CDS nudF NC_011989.1 1230605 1231045 R ADP-Ribose Pyrophosphatase complement(1230605..1231045) Agrobacterium vitis S4 7386439 YP_002549053.1 CDS Avi_1467 NC_011989.1 1231136 1231891 D hypothetical protein 1231136..1231891 Agrobacterium vitis S4 7386440 YP_002549054.1 CDS Avi_1469 NC_011989.1 1231888 1232232 D hypothetical protein 1231888..1232232 Agrobacterium vitis S4 7386441 YP_002549055.1 CDS pssA NC_011989.1 1232332 1233240 R phosphatidylserine synthase complement(1232332..1233240) Agrobacterium vitis S4 7386442 YP_002549056.1 CDS psd NC_011989.1 1233278 1233976 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(1233278..1233976) Agrobacterium vitis S4 7386443 YP_002549057.1 CDS Avi_1472 NC_011989.1 1234098 1235984 R ABC transporter ATPase complement(1234098..1235984) Agrobacterium vitis S4 7386444 YP_002549058.1 CDS Avi_1474 NC_011989.1 1236163 1238154 R hypothetical protein complement(1236163..1238154) Agrobacterium vitis S4 7386445 YP_002549059.1 CDS Avi_1475 NC_011989.1 1238503 1239123 D hypothetical protein 1238503..1239123 Agrobacterium vitis S4 7386446 YP_002549060.1 CDS Avi_1476 NC_011989.1 1239112 1240035 R hypothetical protein complement(1239112..1240035) Agrobacterium vitis S4 7386447 YP_002549061.1 CDS Avi_1477 NC_011989.1 1240182 1241798 R putative alpha-isopropylmalate/homocitrate synthase family transferase complement(1240182..1241798) Agrobacterium vitis S4 7386448 YP_002549062.1 CDS pip NC_011989.1 1241822 1242787 R proline iminopeptidase complement(1241822..1242787) Agrobacterium vitis S4 7386449 YP_002549063.1 CDS Avi_1480 NC_011989.1 1242780 1243274 R hypothetical protein complement(1242780..1243274) Agrobacterium vitis S4 7386450 YP_002549064.1 CDS Avi_1482 NC_011989.1 1243271 1243738 R hypothetical protein complement(1243271..1243738) Agrobacterium vitis S4 7386451 YP_002549065.1 CDS Avi_1483 NC_011989.1 1243735 1244223 R hypothetical protein complement(1243735..1244223) Agrobacterium vitis S4 7386452 YP_002549066.1 CDS Avi_1484 NC_011989.1 1244227 1244652 R hypothetical protein complement(1244227..1244652) Agrobacterium vitis S4 7386453 YP_002549067.1 CDS Avi_1485 NC_011989.1 1244649 1244894 R SpoVT/AbrB family protein complement(1244649..1244894) Agrobacterium vitis S4 7386454 YP_002549068.1 CDS Avi_1486 NC_011989.1 1244985 1245374 R Lactoylglutathione lyase complement(1244985..1245374) Agrobacterium vitis S4 7386455 YP_002549069.1 CDS cysS NC_011989.1 1245504 1247270 R cysteinyl-tRNA synthetase complement(1245504..1247270) Agrobacterium vitis S4 7386456 YP_002549070.1 CDS peh NC_011989.1 1247490 1249124 D Polygalacturonase/Pectinase 1247490..1249124 Agrobacterium vitis S4 7386457 YP_002549071.1 CDS rfbC NC_011989.1 1249308 1249871 D dTDP-4-dehydrorhamnose 3,5-epimerase 1249308..1249871 Agrobacterium vitis S4 7386458 YP_002549072.1 CDS rffB NC_011989.1 1249926 1250984 D dTDP-D-glucose-46-dehydratase 1249926..1250984 Agrobacterium vitis S4 7386459 YP_002549073.1 CDS rfbD NC_011989.1 1250981 1251886 D dTDP-4-dehydrorhamnose reductase 1250981..1251886 Agrobacterium vitis S4 7386460 YP_002549074.1 CDS Avi_1494 NC_011989.1 1251964 1252827 D glucose-1-phosphate thymidylyltransferase 1251964..1252827 Agrobacterium vitis S4 7386461 YP_002549075.1 CDS Avi_1495 NC_011989.1 1253108 1255006 D glycosyltransferase 1253108..1255006 Agrobacterium vitis S4 7386462 YP_002549076.1 CDS Avi_1496 NC_011989.1 1255003 1256085 D glycosyl transferase group 1/2 family protein 1255003..1256085 Agrobacterium vitis S4 7386463 YP_002549077.1 CDS Avi_1497 NC_011989.1 1256142 1256882 R NAD/NADP dependent oxidoreductase complement(1256142..1256882) Agrobacterium vitis S4 7386464 YP_002549078.1 CDS purF NC_011989.1 1256927 1258516 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(1256927..1258516) Agrobacterium vitis S4 7386465 YP_002549079.1 CDS cvpA NC_011989.1 1258637 1259236 R colicin V production protein complement(1258637..1259236) Agrobacterium vitis S4 7386466 YP_002549080.1 CDS ugdH NC_011989.1 1259427 1260743 R UDP-glucose 6-dehydrogenase complement(1259427..1260743) Agrobacterium vitis S4 7386467 YP_002549081.1 CDS galE NC_011989.1 1260856 1261830 R UDP-glucose 4-epimerase complement(1260856..1261830) Agrobacterium vitis S4 7386468 YP_002549082.1 CDS Avi_1505 NC_011989.1 1261827 1262822 R dTDP-glucose 4-6-dehydratase complement(1261827..1262822) Agrobacterium vitis S4 7386469 YP_002549083.1 CDS radA NC_011989.1 1262960 1264360 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(1262960..1264360) Agrobacterium vitis S4 7386470 YP_002549084.1 CDS alr NC_011989.1 1264488 1265651 R alanine racemase complement(1264488..1265651) Agrobacterium vitis S4 7386471 YP_002549085.1 CDS Avi_1509 NC_011989.1 1265738 1266592 D AraC family transcriptional regulator 1265738..1266592 Agrobacterium vitis S4 7386472 YP_002549086.1 CDS Avi_1510 NC_011989.1 1266603 1267262 R ABC transporter permease complement(1266603..1267262) Agrobacterium vitis S4 7386473 YP_002549087.1 CDS Avi_1512 NC_011989.1 1267259 1267930 R ABC transporter permease complement(1267259..1267930) Agrobacterium vitis S4 7386474 YP_002549088.1 CDS Avi_1513 NC_011989.1 1268051 1268833 R amino acid ABC transporter substrate-binding protein complement(1268051..1268833) Agrobacterium vitis S4 7386475 YP_002549089.1 CDS dnaB NC_011989.1 1268982 1270478 R unwinds double stranded DNA; replicative DNA helicase complement(1268982..1270478) Agrobacterium vitis S4 7386476 YP_002549090.1 CDS rplI NC_011989.1 1270732 1271307 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(1270732..1271307) Agrobacterium vitis S4 7386477 YP_002549091.1 CDS Avi_1518 NC_011989.1 1271367 1272368 R hypothetical protein complement(1271367..1272368) Agrobacterium vitis S4 7386478 YP_002549092.1 CDS rpsR NC_011989.1 1272514 1272762 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(1272514..1272762) Agrobacterium vitis S4 7386479 YP_002549093.1 CDS rpsF NC_011989.1 1272775 1273236 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(1272775..1273236) Agrobacterium vitis S4 7386480 YP_002549094.1 CDS Avi_1523 NC_011989.1 1273881 1274936 R extracellular metalloprotease precursor protein complement(1273881..1274936) Agrobacterium vitis S4 7386481 YP_002549095.1 CDS rzcA NC_011989.1 1275079 1275984 R rhizobiocin/RTX toxin complement(1275079..1275984) Agrobacterium vitis S4 7386482 YP_002549096.1 CDS Avi_1526 NC_011989.1 1276153 1277196 R aldo/keto reductase complement(1276153..1277196) Agrobacterium vitis S4 7386483 YP_002549097.1 CDS fabD NC_011989.1 1277403 1278347 D malonyl CoA-acyl carrier protein transacylase 1277403..1278347 Agrobacterium vitis S4 7386484 YP_002549098.1 CDS fabG NC_011989.1 1278479 1279216 D catalyzes the formation of 3-hydroxyacyl-ACP from 3-keto-acyl-ACP; in the rhizobia this protein interacts with NodF to allow for the synthesis of highly polyunsaturated fatty acids necessary for nodulation; 3-ketoacyl-ACP reductase 1278479..1279216 Agrobacterium vitis S4 7386485 YP_002549099.1 CDS acpP NC_011989.1 1279512 1279748 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1279512..1279748 Agrobacterium vitis S4 7386486 YP_002549100.1 CDS fabF NC_011989.1 1279992 1281254 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 1279992..1281254 Agrobacterium vitis S4 7386487 YP_002549101.1 CDS Avi_1532 NC_011989.1 1281588 1282832 D hypothetical protein 1281588..1282832 Agrobacterium vitis S4 7386488 YP_002549102.1 CDS Avi_1534 NC_011989.1 1282888 1283778 D hypothetical protein 1282888..1283778 Agrobacterium vitis S4 7386489 YP_002549103.1 CDS gmk NC_011989.1 1283782 1284444 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1283782..1284444 Agrobacterium vitis S4 7386490 YP_002549104.1 CDS Avi_1536 NC_011989.1 1284507 1285193 D hypothetical protein 1284507..1285193 Agrobacterium vitis S4 7386491 YP_002549105.1 CDS ksgA NC_011989.1 1285222 1286049 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(1285222..1286049) Agrobacterium vitis S4 7386492 YP_002549106.1 CDS pdxA NC_011989.1 1286049 1287089 R catalyzes oxidation of 4-(phosphohydroxy)-L-threonine into 2-amino-3-oxo-4-(phosphohydroxy)butyric acid which decarboxylates to form 1-amino-3-(phosphohydroxy)propan-2-one (3-amino-2-oxopropyl phosphate); 4-hydroxythreonine-4-phosphate dehydrogenase complement(1286049..1287089) Agrobacterium vitis S4 7386493 YP_002549107.1 CDS Avi_1539 NC_011989.1 1287098 1288045 R hypothetical protein complement(1287098..1288045) Agrobacterium vitis S4 7386497 YP_002549108.1 CDS ostA NC_011989.1 1288598 1290931 R organic solvent tolerance protein complement(1288598..1290931) Agrobacterium vitis S4 7387354 YP_002549109.1 CDS Avi_1542 NC_011989.1 1290931 1292019 R hypothetical protein complement(1290931..1292019) Agrobacterium vitis S4 7387355 YP_002549110.1 CDS Avi_1543 NC_011989.1 1292016 1293215 R hypothetical protein complement(1292016..1293215) Agrobacterium vitis S4 7387356 YP_002549111.1 CDS Avi_1544 NC_011989.1 1293327 1294262 R hypothetical protein complement(1293327..1294262) Agrobacterium vitis S4 7387357 YP_002549112.1 CDS pepA NC_011989.1 1294503 1295996 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1294503..1295996 Agrobacterium vitis S4 7387358 YP_002549113.1 CDS Avi_1546 NC_011989.1 1296011 1296460 D hypothetical protein 1296011..1296460 Agrobacterium vitis S4 7387359 YP_002549114.1 CDS mcpA NC_011989.1 1296606 1298513 R methyl-accepting chemotaxis protein complement(1296606..1298513) Agrobacterium vitis S4 7387360 YP_002549115.1 CDS Avi_1549 NC_011989.1 1299127 1301046 R ABC transporter ATPase complement(1299127..1301046) Agrobacterium vitis S4 7387361 YP_002549116.1 CDS ligE NC_011989.1 1301170 1301850 D lignin degradation protein 1301170..1301850 Agrobacterium vitis S4 7387362 YP_002549117.1 CDS ndk NC_011989.1 1301981 1302379 D nucleoside diphosphate kinase 1301981..1302379 Agrobacterium vitis S4 7387363 YP_002549118.1 CDS moaE NC_011989.1 1302547 1303005 R molybdopterin converting factor large subunit complement(1302547..1303005) Agrobacterium vitis S4 7387364 YP_002549119.1 CDS Avi_1555 NC_011989.1 1303010 1303267 R molybdopterin converting factor subunit 1 complement(1303010..1303267) Agrobacterium vitis S4 7387365 YP_002549120.1 CDS pgsA NC_011989.1 1303264 1303854 R CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(1303264..1303854) Agrobacterium vitis S4 7387366 YP_002549121.1 CDS uvrC NC_011989.1 1303967 1306039 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(1303967..1306039) Agrobacterium vitis S4 7387367 YP_002549122.1 CDS Avi_1559 NC_011989.1 1306036 1306815 R dehydrogenase complement(1306036..1306815) Agrobacterium vitis S4 7387368 YP_002549123.1 CDS ropB NC_011989.1 1307228 1307866 D outer membrane protein 1307228..1307866 Agrobacterium vitis S4 7387369 YP_002549124.1 CDS Avi_1562 NC_011989.1 1307954 1308550 R glutathione S-transferase complement(1307954..1308550) Agrobacterium vitis S4 7387370 YP_002549125.1 CDS Avi_1564 NC_011989.1 1308583 1309434 R hypothetical protein complement(1308583..1309434) Agrobacterium vitis S4 7387371 YP_002549126.1 CDS Avi_1565 NC_011989.1 1309510 1311624 D reductase 1309510..1311624 Agrobacterium vitis S4 7387372 YP_002549127.1 CDS Avi_1566 NC_011989.1 1311621 1312205 D NTP pyrophosphohydrolase MutT family 1311621..1312205 Agrobacterium vitis S4 7387373 YP_002549128.1 CDS Avi_1568 NC_011989.1 1312321 1313640 D metallo-beta-lactamase superfamily protein 1312321..1313640 Agrobacterium vitis S4 7387374 YP_002549129.1 CDS Avi_1569 NC_011989.1 1313634 1313978 D transcriptional regulator ArsR family 1313634..1313978 Agrobacterium vitis S4 7387375 YP_002549130.1 CDS Avi_1570 NC_011989.1 1313975 1314385 D hypothetical protein 1313975..1314385 Agrobacterium vitis S4 7387376 YP_002549131.1 CDS Avi_1572 NC_011989.1 1314382 1314816 D hypothetical protein 1314382..1314816 Agrobacterium vitis S4 7387377 YP_002549132.1 CDS Avi_1573 NC_011989.1 1314813 1315592 D hypothetical protein 1314813..1315592 Agrobacterium vitis S4 7387378 YP_002549133.1 CDS purN NC_011989.1 1315582 1316271 R glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase complement(1315582..1316271) Agrobacterium vitis S4 7387379 YP_002549134.1 CDS garS NC_011989.1 1316268 1317341 R catalyzes the formation of 1-(5-phosphoribosyl)-5-aminoimidazole from 2-(formamido)-N1-(5-phosphoribosyl)acetamidine and ATP in purine biosynthesis; phosphoribosylaminoimidazole synthetase complement(1316268..1317341) Agrobacterium vitis S4 7387380 YP_002549135.1 CDS Avi_1577 NC_011989.1 1317612 1318751 D permease 1317612..1318751 Agrobacterium vitis S4 7387381 YP_002549136.1 CDS Avi_1578 NC_011989.1 1318752 1319474 D hypothetical protein 1318752..1319474 Agrobacterium vitis S4 7387382 YP_002549137.1 CDS ppk NC_011989.1 1319582 1321843 D catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase 1319582..1321843 Agrobacterium vitis S4 7387383 YP_002549138.1 CDS ppx NC_011989.1 1322020 1323540 D exopolyphosphatase 1322020..1323540 Agrobacterium vitis S4 7387384 YP_002549139.1 CDS Avi_1583 NC_011989.1 1323561 1324052 R LysR family transcriptional regulator complement(1323561..1324052) Agrobacterium vitis S4 7387385 YP_002549140.1 CDS mntH NC_011989.1 1324330 1325691 D manganese transport protein 1324330..1325691 Agrobacterium vitis S4 7387386 YP_002549141.1 CDS Avi_1585 NC_011989.1 1325675 1326694 R hypothetical protein complement(1325675..1326694) Agrobacterium vitis S4 7387387 YP_002549142.1 CDS Avi_1586 NC_011989.1 1326694 1327671 R hypothetical protein complement(1326694..1327671) Agrobacterium vitis S4 7387388 YP_002549143.1 CDS Avi_1587 NC_011989.1 1327727 1328179 R hypothetical protein complement(1327727..1328179) Agrobacterium vitis S4 7387389 YP_002549144.1 CDS rnd NC_011989.1 1328221 1329375 R ribonuclease D complement(1328221..1329375) Agrobacterium vitis S4 7387390 YP_002549145.1 CDS Avi_1589 NC_011989.1 1329611 1331023 R cu-oxidase multicopper oxidase complement(1329611..1331023) Agrobacterium vitis S4 7387391 YP_002549146.1 CDS Avi_1591 NC_011989.1 1331111 1332346 R MFS permease complement(1331111..1332346) Agrobacterium vitis S4 7387392 YP_002549147.1 CDS aspS NC_011989.1 1332566 1334371 D catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase 1332566..1334371 Agrobacterium vitis S4 7387393 YP_002549148.1 CDS Avi_1593 NC_011989.1 1334376 1334906 D hypothetical protein 1334376..1334906 Agrobacterium vitis S4 7387394 YP_002549149.1 CDS Avi_1594 NC_011989.1 1334987 1336210 R hypothetical protein complement(1334987..1336210) Agrobacterium vitis S4 7387395 YP_002549150.1 CDS parC NC_011989.1 1336410 1338686 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1336410..1338686 Agrobacterium vitis S4 7387396 YP_002549151.1 CDS Avi_1597 NC_011989.1 1338897 1340921 R GGDEF family protein complement(1338897..1340921) Agrobacterium vitis S4 7387397 YP_002549152.1 CDS Avi_1598 NC_011989.1 1341232 1342278 D hypothetical protein 1341232..1342278 Agrobacterium vitis S4 7387398 YP_002549153.1 CDS Avi_1600 NC_011989.1 1342748 1344532 D GGDEF family protein 1342748..1344532 Agrobacterium vitis S4 7387399 YP_002549154.1 CDS Avi_1601 NC_011989.1 1344616 1345377 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(1344616..1345377) Agrobacterium vitis S4 7387400 YP_002549155.1 CDS Avi_1602 NC_011989.1 1345713 1346171 R hypothetical protein complement(1345713..1346171) Agrobacterium vitis S4 7387401 YP_002549156.1 CDS hemB NC_011989.1 1346294 1347307 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(1346294..1347307) Agrobacterium vitis S4 7387402 YP_002549157.1 CDS Avi_1604 NC_011989.1 1347490 1347927 D hypothetical protein 1347490..1347927 Agrobacterium vitis S4 7387403 YP_002549158.1 CDS mucS NC_011989.1 1348076 1348588 D exopolysaccharide II synthesis transcriptional activator ExpG 1348076..1348588 Agrobacterium vitis S4 7387404 YP_002549159.1 CDS Avi_1609 NC_011989.1 1349096 1350328 D hypothetical protein 1349096..1350328 Agrobacterium vitis S4 7387405 YP_002549160.1 CDS glyA NC_011989.1 1350531 1351820 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 1350531..1351820 Agrobacterium vitis S4 7387406 YP_002549161.1 CDS nrdR NC_011989.1 1351830 1352306 D transcriptional regulator NrdR 1351830..1352306 Agrobacterium vitis S4 7387407 YP_002549162.1 CDS ribD NC_011989.1 1352309 1353409 D bifunctional riboflavin deaminase-reductase 1352309..1353409 Agrobacterium vitis S4 7387408 YP_002549163.1 CDS ribc NC_011989.1 1353406 1354020 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 1353406..1354020 Agrobacterium vitis S4 7387409 YP_002549164.1 CDS Avi_1616 NC_011989.1 1354082 1354459 R hypothetical protein complement(1354082..1354459) Agrobacterium vitis S4 7387410 YP_002549165.1 CDS ribH NC_011989.1 1354990 1355448 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 1354990..1355448 Agrobacterium vitis S4 7387411 YP_002549166.1 CDS nusB NC_011989.1 1355453 1355935 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 1355453..1355935 Agrobacterium vitis S4 7387412 YP_002549167.1 CDS Avi_1621 NC_011989.1 1355962 1357188 D MFS permease 1355962..1357188 Agrobacterium vitis S4 7387413 YP_002549168.1 CDS hppA NC_011989.1 1357527 1359665 D pyrophosphate-energized proton pump; pyrophosphate-energized inorganic pyrophosphatase; H+-PPase; can cleave pyrophosphate to two phosphates; can generate a proton motive force and drive pyrophosphate synthesis when PMF is sufficient; membrane-bound proton-translocating pyrophosphatase 1357527..1359665 Agrobacterium vitis S4 7387414 YP_002549169.1 CDS Avi_1624 NC_011989.1 1359744 1360436 R hypothetical protein complement(1359744..1360436) Agrobacterium vitis S4 7387415 YP_002549170.1 CDS Avi_1626 NC_011989.1 1360585 1361139 D hypothetical protein 1360585..1361139 Agrobacterium vitis S4 7387416 YP_002549171.1 CDS Avi_1627 NC_011989.1 1361136 1361699 D hypothetical protein 1361136..1361699 Agrobacterium vitis S4 7387417 YP_002549172.1 CDS plsX NC_011989.1 1361834 1362877 D involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX 1361834..1362877 Agrobacterium vitis S4 7387418 YP_002549173.1 CDS fabH NC_011989.1 1362897 1363868 D 3-oxoacyl-ACP synthase 1362897..1363868 Agrobacterium vitis S4 7387419 YP_002549174.1 CDS ihfA NC_011989.1 1363966 1364304 D This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha 1363966..1364304 Agrobacterium vitis S4 7387420 YP_002549175.1 CDS Avi_1633 NC_011989.1 1364498 1365043 D hypothetical protein 1364498..1365043 Agrobacterium vitis S4 7387421 YP_002549176.1 CDS Avi_1634 NC_011989.1 1365156 1365608 R hypothetical protein complement(1365156..1365608) Agrobacterium vitis S4 7387422 YP_002549177.1 CDS Avi_1635 NC_011989.1 1365718 1366509 D hypothetical protein 1365718..1366509 Agrobacterium vitis S4 7387423 YP_002549178.1 CDS exsG NC_011989.1 1367090 1368118 D two component sensor kinase 1367090..1368118 Agrobacterium vitis S4 7387424 YP_002549179.1 CDS Avi_1637 NC_011989.1 1368272 1368796 R integrase complement(1368272..1368796) Agrobacterium vitis S4 7387425 YP_002549180.1 CDS istB NC_011989.1 1369010 1369804 R IS21 family transposase complement(1369010..1369804) Agrobacterium vitis S4 7387426 YP_002549181.1 CDS istA NC_011989.1 1369794 1371311 R IS21 family transposase complement(1369794..1371311) Agrobacterium vitis S4 7387427 YP_002549182.1 CDS Avi_1641 NC_011989.1 1371367 1373079 R Subtilisin-like serine protease complement(1371367..1373079) Agrobacterium vitis S4 7387428 YP_002549183.1 CDS Avi_1642 NC_011989.1 1373092 1374018 R AAA-family ATPase complement(1373092..1374018) Agrobacterium vitis S4 7386662 YP_002549184.1 CDS Avi_1644 NC_011989.1 1374593 1375255 R transcriptional regulator complement(1374593..1375255) Agrobacterium vitis S4 7386663 YP_002549185.1 CDS Avi_1645 NC_011989.1 1375343 1376326 D AraC family transcriptional regulator 1375343..1376326 Agrobacterium vitis S4 7386664 YP_002549186.1 CDS vgrG NC_011989.1 1376696 1379098 D vgrG protein 1376696..1379098 Agrobacterium vitis S4 7386665 YP_002549187.1 CDS Avi_1647 NC_011989.1 1379102 1379833 D hypothetical protein 1379102..1379833 Agrobacterium vitis S4 7386666 YP_002549188.1 CDS Avi_1649 NC_011989.1 1380667 1381299 D hypothetical protein 1380667..1381299 Agrobacterium vitis S4 7386667 YP_002549189.1 CDS Avi_1650 NC_011989.1 1381581 1381865 D hypothetical protein 1381581..1381865 Agrobacterium vitis S4 7386668 YP_002549190.1 CDS attM NC_011989.1 1382144 1382860 R Zn-dependent hydrolase complement(1382144..1382860) Agrobacterium vitis S4 7386669 YP_002549191.1 CDS Avi_1655 NC_011989.1 1382942 1383757 R hypothetical protein complement(1382942..1383757) Agrobacterium vitis S4 7386670 YP_002549192.1 CDS Avi_1658 NC_011989.1 1384843 1385871 D hypothetical protein 1384843..1385871 Agrobacterium vitis S4 7388001 YP_002549193.1 CDS Avi_1659 NC_011989.1 1385970 1386119 R hypothetical protein complement(1385970..1386119) Agrobacterium vitis S4 7386672 YP_002549194.1 CDS Avi_1661 NC_011989.1 1386231 1387490 R glycosyl transferase complement(1386231..1387490) Agrobacterium vitis S4 7386673 YP_002549195.1 CDS Avi_1662 NC_011989.1 1387522 1388748 R hypothetical protein complement(1387522..1388748) Agrobacterium vitis S4 7386674 YP_002549196.1 CDS Avi_1663 NC_011989.1 1388745 1390295 R polysaccharide biosynthesis glycosyltransferase complement(1388745..1390295) Agrobacterium vitis S4 7386675 YP_002549197.1 CDS Avi_1664 NC_011989.1 1390396 1391532 R glycosyl transferase complement(1390396..1391532) Agrobacterium vitis S4 7386676 YP_002549198.1 CDS gumB NC_011989.1 1391532 1392101 R polysaccharide export protein complement(1391532..1392101) Agrobacterium vitis S4 7386677 YP_002549199.1 CDS exoP NC_011989.1 1392279 1394522 D exopolysaccharide polymerization/transport protein 1392279..1394522 Agrobacterium vitis S4 7386678 YP_002549200.1 CDS Avi_1667 NC_011989.1 1394574 1395788 R hypothetical protein complement(1394574..1395788) Agrobacterium vitis S4 7386679 YP_002549201.1 CDS Avi_1668 NC_011989.1 1395868 1396116 R hypothetical protein complement(1395868..1396116) Agrobacterium vitis S4 7386680 YP_002549202.1 CDS cox15 NC_011989.1 1396233 1397327 D cytochrome oxidase assembly factor 1396233..1397327 Agrobacterium vitis S4 7386681 YP_002549203.1 CDS Avi_1671 NC_011989.1 1397307 1398134 R hypothetical protein complement(1397307..1398134) Agrobacterium vitis S4 7386682 YP_002549204.1 CDS strB NC_011989.1 1398197 1399063 R streptomycin resistance protein complement(1398197..1399063) Agrobacterium vitis S4 7386683 YP_002549205.1 CDS argC NC_011989.1 1399080 1400012 R catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase complement(1399080..1400012) Agrobacterium vitis S4 7386684 YP_002549206.1 CDS speB NC_011989.1 1400082 1401035 R catalyzes the formation of putrescine from agmatine; agmatinase complement(1400082..1401035) Agrobacterium vitis S4 7386685 YP_002549207.1 CDS Avi_1676 NC_011989.1 1401094 1401939 R hypothetical protein complement(1401094..1401939) Agrobacterium vitis S4 7386686 YP_002549208.1 CDS Avi_1678 NC_011989.1 1402058 1402903 R hypothetical protein complement(1402058..1402903) Agrobacterium vitis S4 7386687 YP_002549209.1 CDS Avi_1679 NC_011989.1 1402975 1403337 R hypothetical protein complement(1402975..1403337) Agrobacterium vitis S4 7386688 YP_002549210.1 CDS rpsI NC_011989.1 1403453 1403920 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(1403453..1403920) Agrobacterium vitis S4 7386689 YP_002549211.1 CDS rplM NC_011989.1 1403923 1404387 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(1403923..1404387) Agrobacterium vitis S4 7386690 YP_002549212.1 CDS Avi_1683 NC_011989.1 1404482 1404712 D hypothetical protein 1404482..1404712 Agrobacterium vitis S4 7386691 YP_002549213.1 CDS Avi_1684 NC_011989.1 1405613 1406077 D hypothetical protein 1405613..1406077 Agrobacterium vitis S4 7386692 YP_002549214.1 CDS Avi_1686 NC_011989.1 1406159 1406527 R hypothetical protein complement(1406159..1406527) Agrobacterium vitis S4 7386693 YP_002549215.1 CDS Avi_1687 NC_011989.1 1406746 1407198 D hypothetical protein 1406746..1407198 Agrobacterium vitis S4 7386694 YP_002549216.1 CDS Avi_1690 NC_011989.1 1407338 1408621 D catalyzes the formation of L-methionine and acetate from O-acetyl-L-homoserine and methanethiol; O-acetylhomoserine aminocarboxypropyltransferase 1407338..1408621 Agrobacterium vitis S4 7386695 YP_002549217.1 CDS Avi_1691 NC_011989.1 1408687 1409817 R hypothetical protein complement(1408687..1409817) Agrobacterium vitis S4 7386696 YP_002549218.1 CDS Avi_1693 NC_011989.1 1410204 1410548 D hypothetical protein 1410204..1410548 Agrobacterium vitis S4 7386697 YP_002549219.1 CDS Avi_1694 NC_011989.1 1410560 1411804 R cytochrome P450 hydroxylase complement(1410560..1411804) Agrobacterium vitis S4 7386698 YP_002549220.1 CDS Avi_1695 NC_011989.1 1411849 1413111 R GGDEF family protein complement(1411849..1413111) Agrobacterium vitis S4 7386699 YP_002549221.1 CDS clpP NC_011989.1 1413481 1414113 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1413481..1414113 Agrobacterium vitis S4 7386700 YP_002549222.1 CDS clpX NC_011989.1 1414402 1415679 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1414402..1415679 Agrobacterium vitis S4 7386701 YP_002549223.1 CDS lon NC_011989.1 1416084 1418687 D ATP-dependent protease La 1416084..1418687 Agrobacterium vitis S4 7386702 YP_002549224.1 CDS hupA NC_011989.1 1419015 1419290 D HU-like DNA-binding protein alpha subunit 1419015..1419290 Agrobacterium vitis S4 7386703 YP_002549225.1 CDS Avi_1702 NC_011989.1 1419666 1421003 D Na+/melibiose symporter and related transporter protein 1419666..1421003 Agrobacterium vitis S4 7386704 YP_002549226.1 CDS Avi_1703 NC_011989.1 1421004 1421522 R transcriptional regulator MarR family complement(1421004..1421522) Agrobacterium vitis S4 7386705 YP_002549227.1 CDS fadD NC_011989.1 1421742 1423340 D long-chain-fatty-acid-CoA-ligase 1421742..1423340 Agrobacterium vitis S4 7386706 YP_002549228.1 CDS fadB NC_011989.1 1423352 1424185 D catalyzes the conversion of feruloyl-CoA to vanillin and acetyl-CoA; p-hydroxycinnamoyl CoA hydratase/lyase 1423352..1424185 Agrobacterium vitis S4 7386707 YP_002549229.1 CDS Avi_1707 NC_011989.1 1424777 1425574 R hypothetical protein complement(1424777..1425574) Agrobacterium vitis S4 7386708 YP_002549230.1 CDS Avi_1708 NC_011989.1 1425616 1426308 R hypothetical protein complement(1425616..1426308) Agrobacterium vitis S4 7386709 YP_002549231.1 CDS nuoA NC_011989.1 1427916 1428290 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit A 1427916..1428290 Agrobacterium vitis S4 7388003 YP_002549232.1 CDS nuoB NC_011989.1 1428281 1428868 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1428281..1428868 Agrobacterium vitis S4 7386711 YP_002549233.1 CDS nuoC NC_011989.1 1428886 1429488 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit C 1428886..1429488 Agrobacterium vitis S4 7386712 YP_002549234.1 CDS nouD NC_011989.1 1429508 1430698 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1429508..1430698 Agrobacterium vitis S4 7386713 YP_002549235.1 CDS nuoE NC_011989.1 1430956 1431756 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit E 1430956..1431756 Agrobacterium vitis S4 7386714 YP_002549236.1 CDS nuoF NC_011989.1 1431760 1433064 D part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 1431760..1433064 Agrobacterium vitis S4 7386715 YP_002549237.1 CDS Avi_1719 NC_011989.1 1433109 1433840 D hypothetical protein 1433109..1433840 Agrobacterium vitis S4 7386716 YP_002549238.1 CDS Avi_1720 NC_011989.1 1434123 1436204 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 1434123..1436204 Agrobacterium vitis S4 7386717 YP_002549239.1 CDS nuoH NC_011989.1 1436217 1437260 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H 1436217..1437260 Agrobacterium vitis S4 7386718 YP_002549240.1 CDS nuoI NC_011989.1 1437301 1437792 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1437301..1437792 Agrobacterium vitis S4 7386719 YP_002549241.1 CDS nuoJ NC_011989.1 1437948 1438562 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit J 1437948..1438562 Agrobacterium vitis S4 7386720 YP_002549242.1 CDS nuoK NC_011989.1 1438595 1438903 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit K 1438595..1438903 Agrobacterium vitis S4 7386721 YP_002549243.1 CDS nuoL NC_011989.1 1438911 1440902 D Catalyzes the transfer of electrons from NADH to ubiquinone; NADH dehydrogenase subunit L 1438911..1440902 Agrobacterium vitis S4 7386722 YP_002549244.1 CDS nuoM NC_011989.1 1440875 1442413 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit M 1440875..1442413 Agrobacterium vitis S4 7386723 YP_002549245.1 CDS nuoN NC_011989.1 1442431 1443870 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit N 1442431..1443870 Agrobacterium vitis S4 7386724 YP_002549246.1 CDS birA NC_011989.1 1443867 1444655 D birA bifunctional protein 1443867..1444655 Agrobacterium vitis S4 7386725 YP_002549247.1 CDS Avi_1731 NC_011989.1 1444652 1446319 D metal dependent hydrolase 1444652..1446319 Agrobacterium vitis S4 7386726 YP_002549248.1 CDS gloA NC_011989.1 1446441 1446845 D lactoylglutathione lyase 1446441..1446845 Agrobacterium vitis S4 7386727 YP_002549249.1 CDS Avi_1735 NC_011989.1 1446876 1447274 R hypothetical protein complement(1446876..1447274) Agrobacterium vitis S4 7386728 YP_002549250.1 CDS Avi_1736 NC_011989.1 1447432 1448025 D TetR family transcriptional regulator 1447432..1448025 Agrobacterium vitis S4 7386729 YP_002549251.1 CDS Avi_1737 NC_011989.1 1448181 1448450 D hypothetical protein 1448181..1448450 Agrobacterium vitis S4 7386730 YP_002549252.1 CDS proS NC_011989.1 1448895 1450391 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1448895..1450391 Agrobacterium vitis S4 7386731 YP_002549253.1 CDS Avi_1740 NC_011989.1 1450411 1451718 D ABC transporter permease 1450411..1451718 Agrobacterium vitis S4 7386732 YP_002549254.1 CDS lolD NC_011989.1 1451733 1452422 D ABC transporter nucleotide binding/ATPase (lipoprotein) 1451733..1452422 Agrobacterium vitis S4 7386733 YP_002549255.1 CDS dnaE NC_011989.1 1452953 1456492 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 1452953..1456492 Agrobacterium vitis S4 7386734 YP_002549256.1 CDS Avi_1744 NC_011989.1 1456566 1457801 R hypothetical protein complement(1456566..1457801) Agrobacterium vitis S4 7386735 YP_002549257.1 CDS dinP NC_011989.1 1458050 1459336 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(1458050..1459336) Agrobacterium vitis S4 7386736 YP_002549258.1 CDS Avi_1747 NC_011989.1 1459445 1460092 R hypothetical protein complement(1459445..1460092) Agrobacterium vitis S4 7386737 YP_002549259.1 CDS Avi_1748 NC_011989.1 1460092 1460400 R hypothetical protein complement(1460092..1460400) Agrobacterium vitis S4 7386738 YP_002549260.1 CDS divK NC_011989.1 1460643 1461014 D two component response regulator 1460643..1461014 Agrobacterium vitis S4 7386739 YP_002549261.1 CDS pleD NC_011989.1 1461199 1462572 D involved in swarmer-to-stalked cell differentiation in Caulobacter crescentus; catalyzes the condensation of two GTP molecules to form the secondary messenger cyclic di-GMP (c-di-GMP); upon phosphorylation of domain D1 the protein dimerizes; presumably this allows the two GTP-bound GGDEF (diguanylate cyclase) domains to catalyze the condensation reaction; allosterically inhibited by c-di-GMP; response regulator PleD 1461199..1462572 Agrobacterium vitis S4 7386740 YP_002549262.1 CDS rpmG NC_011989.1 1463612 1463779 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(1463612..1463779) Agrobacterium vitis S4 7386741 YP_002549263.1 CDS Avi_1753 NC_011989.1 1463873 1465057 R MFS permease complement(1463873..1465057) Agrobacterium vitis S4 7386742 YP_002549264.1 CDS Avi_1754 NC_011989.1 1465311 1465766 R hypothetical protein complement(1465311..1465766) Agrobacterium vitis S4 7386743 YP_002549265.1 CDS rnr NC_011989.1 1465913 1468291 R ribonuclease R complement(1465913..1468291) Agrobacterium vitis S4 7386744 YP_002549266.1 CDS topA NC_011989.1 1468288 1471002 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(1468288..1471002) Agrobacterium vitis S4 7386745 YP_002549267.1 CDS dprA NC_011989.1 1471495 1472646 R DNA protecting protein DprA complement(1471495..1472646) Agrobacterium vitis S4 7386746 YP_002549268.1 CDS Avi_1760 NC_011989.1 1472653 1473282 R hypothetical protein complement(1472653..1473282) Agrobacterium vitis S4 7386747 YP_002549269.1 CDS pyrC NC_011989.1 1473300 1474592 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase complement(1473300..1474592) Agrobacterium vitis S4 7386748 YP_002549270.1 CDS pyrB NC_011989.1 1474589 1475545 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(1474589..1475545) Agrobacterium vitis S4 7386749 YP_002549271.1 CDS acd NC_011989.1 1475853 1477496 D acyl-CoA dehydrogenase 1475853..1477496 Agrobacterium vitis S4 7386750 YP_002549272.1 CDS Avi_1764 NC_011989.1 1477557 1477985 D Histone acetyltransferase 1477557..1477985 Agrobacterium vitis S4 7386751 YP_002549273.1 CDS Avi_1767 NC_011989.1 1478316 1478636 D hypothetical protein 1478316..1478636 Agrobacterium vitis S4 7386752 YP_002549274.1 CDS Avi_1768 NC_011989.1 1478591 1479067 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1478591..1479067) Agrobacterium vitis S4 7386753 YP_002549275.1 CDS Avi_1769 NC_011989.1 1479212 1479916 D catalyzes the opening and hydrolysis of the beta-lactam ring of beta-lactam antibiotics such as penicillins and cephalosporins; metal-dependent hydrolase 1479212..1479916 Agrobacterium vitis S4 7386754 YP_002549276.1 CDS gatC NC_011989.1 1480080 1480367 D glutamyl-tRNA-Gln-amidotransferase chain C 1480080..1480367 Agrobacterium vitis S4 7386755 YP_002549277.1 CDS gatA NC_011989.1 1480439 1481920 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A 1480439..1481920 Agrobacterium vitis S4 7386756 YP_002549278.1 CDS Avi_1774 NC_011989.1 1481925 1482404 D acetyltransferase 1481925..1482404 Agrobacterium vitis S4 7386757 YP_002549279.1 CDS Avi_1775 NC_011989.1 1482501 1483019 D acetyltransferase 1482501..1483019 Agrobacterium vitis S4 7386758 YP_002549280.1 CDS Avi_1776 NC_011989.1 1483032 1484474 R hypothetical protein complement(1483032..1484474) Agrobacterium vitis S4 7386759 YP_002549281.1 CDS Avi_1777 NC_011989.1 1484490 1484813 R Lipid A biosynthesis protein complement(1484490..1484813) Agrobacterium vitis S4 7386760 YP_002549282.1 CDS Avi_1778 NC_011989.1 1484806 1485573 R dolichol-phosphate mannosyltransferase complement(1484806..1485573) Agrobacterium vitis S4 7386761 YP_002549283.1 CDS gatB NC_011989.1 1485920 1487422 D allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B 1485920..1487422 Agrobacterium vitis S4 7386762 YP_002549284.1 CDS Avi_1782 NC_011989.1 1487429 1487947 D acetyltransferase 1487429..1487947 Agrobacterium vitis S4 7386763 YP_002549285.1 CDS Avi_1783 NC_011989.1 1487987 1488448 D acetyltransferase 1487987..1488448 Agrobacterium vitis S4 7386764 YP_002549286.1 CDS Avi_1784 NC_011989.1 1488549 1488947 D Provides the input to the respiratory chain from the NAD-linked dehydrogenases of the citric acid cycle. The complex couples the oxidation of NADH and the reduction of ubiquinone, to the generation of a proton gradient which is then used for ATP synthesis; NADH dehydrogenase 1488549..1488947 Agrobacterium vitis S4 7386765 YP_002549287.1 CDS Avi_1785 NC_011989.1 1489079 1489594 D hypothetical protein 1489079..1489594 Agrobacterium vitis S4 7386766 YP_002549288.1 CDS aat NC_011989.1 1489625 1490263 R leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase complement(1489625..1490263) Agrobacterium vitis S4 7386767 YP_002549289.1 CDS accC NC_011989.1 1490273 1491625 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(1490273..1491625) Agrobacterium vitis S4 7386768 YP_002549290.1 CDS accB NC_011989.1 1491630 1492118 R composes the biotin carboxyl carrier protein subunit of the acetyl-CoA carboxylase complex, the enzyme that catalyzes the carboxylation of acetyl-CoA to malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxyl carrier protein subunit complement(1491630..1492118) Agrobacterium vitis S4 7386769 YP_002549291.1 CDS aroQ NC_011989.1 1492144 1492581 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(1492144..1492581) Agrobacterium vitis S4 7386770 YP_002549292.1 CDS Avi_1790 NC_011989.1 1492707 1493531 R outer membrane protein complement(1492707..1493531) Agrobacterium vitis S4 7386771 YP_002549293.1 CDS aspB NC_011989.1 1493776 1494933 D aspartate transaminase 1493776..1494933 Agrobacterium vitis S4 7386772 YP_002549294.1 CDS Avi_1793 NC_011989.1 1495057 1495629 D hypothetical protein 1495057..1495629 Agrobacterium vitis S4 7386773 YP_002549295.1 CDS rne NC_011989.1 1495734 1498841 R ribonuclease E complement(1495734..1498841) Agrobacterium vitis S4 7386774 YP_002549296.1 CDS amiA NC_011989.1 1499498 1500802 D N-acetylmuramoyl-L-alanine amidase 1499498..1500802 Agrobacterium vitis S4 7386775 YP_002549297.1 CDS mrcA NC_011989.1 1501128 1503584 D penicillin-binding protein 1a 1501128..1503584 Agrobacterium vitis S4 7386776 YP_002549298.1 CDS prfB NC_011989.1 1503783 1504817 D peptide chain release factor 2 1503783..1504817 Agrobacterium vitis S4 7386777 YP_002549299.1 CDS Avi_1801 NC_011989.1 1504948 1505847 D orotidine 5-phosphate decarboxylase 1504948..1505847 Agrobacterium vitis S4 7386778 YP_002549300.1 CDS Avi_1802 NC_011989.1 1505854 1506399 R hypothetical protein complement(1505854..1506399) Agrobacterium vitis S4 7386779 YP_002549301.1 CDS Avi_1804 NC_011989.1 1506442 1507143 R hypothetical protein complement(1506442..1507143) Agrobacterium vitis S4 7386780 YP_002549302.1 CDS Avi_1808 NC_011989.1 1507597 1507746 R hypothetical protein complement(1507597..1507746) Agrobacterium vitis S4 7388004 YP_002549303.1 CDS Avi_1810 NC_011989.1 1508401 1509282 R tRNA/rRNA metyltransferase complement(1508401..1509282) Agrobacterium vitis S4 7386782 YP_002549304.1 CDS tuf NC_011989.1 1509896 1511071 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1509896..1511071 Agrobacterium vitis S4 7388006 YP_002549305.1 CDS Avi_1814 NC_011989.1 1511339 1512028 D hypothetical protein 1511339..1512028 Agrobacterium vitis S4 7386784 YP_002549306.1 CDS Avi_1815 NC_011989.1 1512154 1512888 D CMP KDO transferase 1512154..1512888 Agrobacterium vitis S4 7386785 YP_002549307.1 CDS Avi_1816 NC_011989.1 1513026 1513679 D hypothetical protein 1513026..1513679 Agrobacterium vitis S4 7386786 YP_002549308.1 CDS secE NC_011989.1 1514059 1514259 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 1514059..1514259 Agrobacterium vitis S4 7388007 YP_002549309.1 CDS nusG NC_011989.1 1514276 1514806 D Modulates Rho-dependent transcription termination; transcription antitermination protein NusG 1514276..1514806 Agrobacterium vitis S4 7386788 YP_002549310.1 CDS rplK NC_011989.1 1514953 1515384 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 1514953..1515384 Agrobacterium vitis S4 7386789 YP_002549311.1 CDS rplA NC_011989.1 1515387 1516082 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 1515387..1516082 Agrobacterium vitis S4 7386790 YP_002549312.1 CDS rplJ NC_011989.1 1516426 1516944 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 1516426..1516944 Agrobacterium vitis S4 7386791 YP_002549313.1 CDS rplL NC_011989.1 1517013 1517387 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 1517013..1517387 Agrobacterium vitis S4 7386792 YP_002549314.1 CDS rpoB NC_011989.1 1517641 1521780 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 1517641..1521780 Agrobacterium vitis S4 7386793 YP_002549315.1 CDS rpoC NC_011989.1 1521965 1526176 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 1521965..1526176 Agrobacterium vitis S4 7386794 YP_002549316.1 CDS Avi_1829 NC_011989.1 1526326 1526760 R NTP pyrophosphohydrolase MutT family complement(1526326..1526760) Agrobacterium vitis S4 7386795 YP_002549317.1 CDS Avi_1830 NC_011989.1 1526771 1527064 R hypothetical protein complement(1526771..1527064) Agrobacterium vitis S4 7386796 YP_002549318.1 CDS rpsL NC_011989.1 1527507 1528115 D 30S ribosomal protein S12 1527507..1528115 Agrobacterium vitis S4 7386797 YP_002549319.1 CDS rpsG NC_011989.1 1528198 1528668 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1528198..1528668 Agrobacterium vitis S4 7386798 YP_002549320.1 CDS fusA NC_011989.1 1528703 1530802 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1528703..1530802 Agrobacterium vitis S4 7386799 YP_002549321.1 CDS tuf NC_011989.1 1530874 1532049 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 1530874..1532049 Agrobacterium vitis S4 7386800 YP_002549322.1 CDS rpsJ NC_011989.1 1532371 1532679 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 1532371..1532679 Agrobacterium vitis S4 7386801 YP_002549323.1 CDS rplC NC_011989.1 1532851 1533492 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 1532851..1533492 Agrobacterium vitis S4 7386802 YP_002549324.1 CDS rplD NC_011989.1 1533505 1534125 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 1533505..1534125 Agrobacterium vitis S4 7386803 YP_002549325.1 CDS rplW NC_011989.1 1534122 1534415 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 1534122..1534415 Agrobacterium vitis S4 7386804 YP_002549326.1 CDS rplB NC_011989.1 1534427 1535263 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 1534427..1535263 Agrobacterium vitis S4 7386805 YP_002549327.1 CDS rpsS NC_011989.1 1535279 1535557 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 1535279..1535557 Agrobacterium vitis S4 7386806 YP_002549328.1 CDS rplV NC_011989.1 1535560 1535949 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 1535560..1535949 Agrobacterium vitis S4 7386807 YP_002549329.1 CDS rpsC NC_011989.1 1535982 1536662 D 30S ribosomal protein S3 1535982..1536662 Agrobacterium vitis S4 7386808 YP_002549330.1 CDS rplP NC_011989.1 1536700 1537113 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 1536700..1537113 Agrobacterium vitis S4 7386809 YP_002549331.1 CDS rpmC NC_011989.1 1537124 1537324 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 1537124..1537324 Agrobacterium vitis S4 7386810 YP_002549332.1 CDS rpsQ NC_011989.1 1537340 1537576 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 1537340..1537576 Agrobacterium vitis S4 7386811 YP_002549333.1 CDS rplN NC_011989.1 1537810 1538178 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 1537810..1538178 Agrobacterium vitis S4 7386812 YP_002549334.1 CDS rplX NC_011989.1 1538194 1538502 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 1538194..1538502 Agrobacterium vitis S4 7386813 YP_002549335.1 CDS rplE NC_011989.1 1538495 1539052 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 1538495..1539052 Agrobacterium vitis S4 7386814 YP_002549336.1 CDS rpsN NC_011989.1 1539086 1539391 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 1539086..1539391 Agrobacterium vitis S4 7386815 YP_002549337.1 CDS rpsH NC_011989.1 1539404 1539802 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 1539404..1539802 Agrobacterium vitis S4 7386816 YP_002549338.1 CDS rplF NC_011989.1 1539845 1540378 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 1539845..1540378 Agrobacterium vitis S4 7386817 YP_002549339.1 CDS rplR NC_011989.1 1540391 1540753 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 1540391..1540753 Agrobacterium vitis S4 7386818 YP_002549340.1 CDS rpsE NC_011989.1 1540899 1541468 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 1540899..1541468 Agrobacterium vitis S4 7386819 YP_002549341.1 CDS rpmD NC_011989.1 1541480 1541683 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 1541480..1541683 Agrobacterium vitis S4 7386820 YP_002549342.1 CDS rplO NC_011989.1 1541700 1542179 D late assembly protein; 50S ribosomal protein L15 1541700..1542179 Agrobacterium vitis S4 7386821 YP_002549343.1 CDS secY NC_011989.1 1542521 1543861 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 1542521..1543861 Agrobacterium vitis S4 7386822 YP_002549344.1 CDS adk NC_011989.1 1543858 1544508 D essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase 1543858..1544508 Agrobacterium vitis S4 7386823 YP_002549345.1 CDS rpsM NC_011989.1 1544738 1545106 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 1544738..1545106 Agrobacterium vitis S4 7386824 YP_002549346.1 CDS rpsK NC_011989.1 1545239 1545628 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 1545239..1545628 Agrobacterium vitis S4 7386825 YP_002549347.1 CDS rpoA NC_011989.1 1545728 1546738 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 1545728..1546738 Agrobacterium vitis S4 7386826 YP_002549348.1 CDS rplQ NC_011989.1 1546858 1547283 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 1546858..1547283 Agrobacterium vitis S4 7386827 YP_002549349.1 CDS Avi_1872 NC_011989.1 1547496 1548590 D Purine nucleoside permease 1547496..1548590 Agrobacterium vitis S4 7387189 YP_002549350.1 CDS Avi_1875 NC_011989.1 1549719 1550102 D hypothetical protein 1549719..1550102 Agrobacterium vitis S4 7387191 YP_002549351.1 CDS Avi_1877 NC_011989.1 1550227 1551660 R thiosulfate sulfurtransferase complement(1550227..1551660) Agrobacterium vitis S4 7387192 YP_002549352.1 CDS alaS NC_011989.1 1551678 1552415 R alanyl-tRNA synthetase complement(1551678..1552415) Agrobacterium vitis S4 7387193 YP_002549353.1 CDS cysK NC_011989.1 1552421 1553458 R cysteine synthase complement(1552421..1553458) Agrobacterium vitis S4 7387194 YP_002549354.1 CDS Avi_1880 NC_011989.1 1553603 1555054 R DNA photolyase complement(1553603..1555054) Agrobacterium vitis S4 7387195 YP_002549355.1 CDS Avi_1882 NC_011989.1 1555565 1556857 R membrane protein associated metalloendopeptidase complement(1555565..1556857) Agrobacterium vitis S4 7387196 YP_002549356.1 CDS Avi_1883 NC_011989.1 1556998 1557780 R hypothetical protein complement(1556998..1557780) Agrobacterium vitis S4 7387197 YP_002549357.1 CDS bcp NC_011989.1 1557882 1558355 R bacterioferritin comigratory protein complement(1557882..1558355) Agrobacterium vitis S4 7387198 YP_002549358.1 CDS Avi_1887 NC_011989.1 1558576 1562001 D hypothetical protein 1558576..1562001 Agrobacterium vitis S4 7387199 YP_002549359.1 CDS Avi_1888 NC_011989.1 1562062 1563234 R hypothetical protein complement(1562062..1563234) Agrobacterium vitis S4 7387200 YP_002549360.1 CDS avsI NC_011989.1 1563426 1564070 R autoinducer synthesis protein complement(1563426..1564070) Agrobacterium vitis S4 7387201 YP_002549361.1 CDS avsR NC_011989.1 1564371 1565111 R transcriptional regulator LuxR family complement(1564371..1565111) Agrobacterium vitis S4 7387202 YP_002549362.1 CDS maeB NC_011989.1 1565458 1567764 R NAD-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; does not decarboxylate oxaloacetate; malic enzyme complement(1565458..1567764) Agrobacterium vitis S4 7387203 YP_002549363.1 CDS Avi_1892 NC_011989.1 1567946 1568806 D hypothetical protein 1567946..1568806 Agrobacterium vitis S4 7387204 YP_002549364.1 CDS Avi_1893 NC_011989.1 1568994 1570124 D ABC transporter permease 1568994..1570124 Agrobacterium vitis S4 7387205 YP_002549365.1 CDS Avi_1894 NC_011989.1 1570149 1571009 D ABC transporter ATPase 1570149..1571009 Agrobacterium vitis S4 7387206 YP_002549366.1 CDS Avi_1895 NC_011989.1 1571016 1572383 D ABC transporter substrate-binding protein 1571016..1572383 Agrobacterium vitis S4 7387207 YP_002549367.1 CDS Avi_1896 NC_011989.1 1572413 1573027 D hypothetical protein 1572413..1573027 Agrobacterium vitis S4 7387208 YP_002549368.1 CDS Avi_1897 NC_011989.1 1573046 1574470 R GntR family transcriptional regulator complement(1573046..1574470) Agrobacterium vitis S4 7387209 YP_002549369.1 CDS Avi_1898 NC_011989.1 1574922 1575479 R hypothetical protein complement(1574922..1575479) Agrobacterium vitis S4 7387210 YP_002549370.1 CDS Avi_1901 NC_011989.1 1575630 1575974 R hypothetical protein complement(1575630..1575974) Agrobacterium vitis S4 7387211 YP_002549371.1 CDS purQ NC_011989.1 1576061 1576735 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I complement(1576061..1576735) Agrobacterium vitis S4 7387212 YP_002549372.1 CDS purS NC_011989.1 1576932 1577174 R With PurL and PurQ catalyzes the conversion of formylglycinamide ribonucleotide, ATP, and glutamine to formylglycinamidine ribonucleotide, ADP, and glutamate in the fourth step of the purine biosynthetic pathway; phosphoribosylformylglycinamidine synthase subunit PurS complement(1576932..1577174) Agrobacterium vitis S4 7387213 YP_002549373.1 CDS purC NC_011989.1 1577191 1577955 R phosphoribosylaminoimidazole-succinocarboxamide synthase complement(1577191..1577955) Agrobacterium vitis S4 7387214 YP_002549374.1 CDS Avi_1908 NC_011989.1 1578251 1578811 R hypothetical protein complement(1578251..1578811) Agrobacterium vitis S4 7387215 YP_002549375.1 CDS Avi_1909 NC_011989.1 1578954 1580624 D hypothetical protein 1578954..1580624 Agrobacterium vitis S4 7387216 YP_002549376.1 CDS Avi_1910 NC_011989.1 1581106 1582347 D GGDEF family protein 1581106..1582347 Agrobacterium vitis S4 7387217 YP_002549377.1 CDS gst NC_011989.1 1582458 1583081 R glutathione S-transferase complement(1582458..1583081) Agrobacterium vitis S4 7387218 YP_002549378.1 CDS icdA NC_011989.1 1583284 1584498 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(1583284..1584498) Agrobacterium vitis S4 7387219 YP_002549379.1 CDS lasT NC_011989.1 1584721 1585581 D tRNA/rRNA methyltransferase 1584721..1585581 Agrobacterium vitis S4 7387220 YP_002549380.1 CDS murI NC_011989.1 1585562 1586371 D converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase 1585562..1586371 Agrobacterium vitis S4 7387221 YP_002549381.1 CDS Avi_1917 NC_011989.1 1586402 1586884 R hypothetical protein complement(1586402..1586884) Agrobacterium vitis S4 7387222 YP_002549382.1 CDS tlyC NC_011989.1 1587694 1588986 D hemolysin 1587694..1588986 Agrobacterium vitis S4 7387223 YP_002549383.1 CDS Avi_1920 NC_011989.1 1589063 1590643 D hypothetical protein 1589063..1590643 Agrobacterium vitis S4 7387224 YP_002549384.1 CDS Avi_1921 NC_011989.1 1590700 1591683 D hypothetical protein 1590700..1591683 Agrobacterium vitis S4 7387225 YP_002549385.1 CDS Avi_1922 NC_011989.1 1591730 1592965 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(1591730..1592965) Agrobacterium vitis S4 7387226 YP_002549386.1 CDS Avi_1923 NC_011989.1 1593763 1594467 D Carbonic anhydrase 1593763..1594467 Agrobacterium vitis S4 7387227 YP_002549387.1 CDS Avi_1925 NC_011989.1 1594472 1595998 D hypothetical protein 1594472..1595998 Agrobacterium vitis S4 7387228 YP_002549388.1 CDS Avi_1926 NC_011989.1 1596080 1597138 R transporter complement(1596080..1597138) Agrobacterium vitis S4 7387229 YP_002549389.1 CDS rpsD NC_011989.1 1597402 1598019 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 1597402..1598019 Agrobacterium vitis S4 7387230 YP_002549390.1 CDS glsA NC_011989.1 1598175 1599101 D catalyzes the formation of glutamate from glutamine; glutaminase 1598175..1599101 Agrobacterium vitis S4 7387231 YP_002549391.1 CDS Avi_1930 NC_011989.1 1599254 1600036 D hypothetical protein 1599254..1600036 Agrobacterium vitis S4 7387232 YP_002549392.1 CDS Avi_1931 NC_011989.1 1600133 1601020 D TtcA; YdaO; catalyzes the thiolation of cytosine 32 in specific tRNAs; C32 tRNA thiolase 1600133..1601020 Agrobacterium vitis S4 7387233 YP_002549393.1 CDS Avi_1933 NC_011989.1 1601064 1601900 D inositol monophosphatase family protein 1601064..1601900 Agrobacterium vitis S4 7387234 YP_002549394.1 CDS Avi_1934 NC_011989.1 1601928 1602749 D inositol monophosphatase family protein 1601928..1602749 Agrobacterium vitis S4 7387235 YP_002549395.1 CDS Avi_1935 NC_011989.1 1602823 1604028 R MFS permease complement(1602823..1604028) Agrobacterium vitis S4 7387236 YP_002549396.1 CDS grlA NC_011989.1 1604286 1604621 R glutaredoxin-related protein complement(1604286..1604621) Agrobacterium vitis S4 7387237 YP_002549397.1 CDS Avi_1939 NC_011989.1 1604939 1605175 R BolA/YrbA family protein complement(1604939..1605175) Agrobacterium vitis S4 7387238 YP_002549398.1 CDS purL NC_011989.1 1605214 1607451 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II complement(1605214..1607451) Agrobacterium vitis S4 7387239 YP_002549399.1 CDS dnaJ NC_011989.1 1607799 1608410 D molecular chaperone DnaJ family 1607799..1608410 Agrobacterium vitis S4 7387240 YP_002549400.1 CDS Avi_1947 NC_011989.1 1608993 1609625 D transcriptional regulator protein 1608993..1609625 Agrobacterium vitis S4 7387241 YP_002549401.1 CDS lipB NC_011989.1 1609647 1610378 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(1609647..1610378) Agrobacterium vitis S4 7387242 YP_002549402.1 CDS Avi_1950 NC_011989.1 1611291 1612052 D polysialic acid transport protein 1611291..1612052 Agrobacterium vitis S4 7388008 YP_002549403.1 CDS intD NC_011989.1 1612077 1613108 R phage-related integrase complement(1612077..1613108) Agrobacterium vitis S4 7387244 YP_002549404.1 CDS Avi_1952 NC_011989.1 1614155 1615162 R hypothetical protein complement(1614155..1615162) Agrobacterium vitis S4 7387245 YP_002549405.1 CDS Avi_1954 NC_011989.1 1615576 1616190 R Phage repressor protein complement(1615576..1616190) Agrobacterium vitis S4 7387246 YP_002549406.1 CDS Avi_1955 NC_011989.1 1616745 1617242 D hypothetical protein 1616745..1617242 Agrobacterium vitis S4 7387247 YP_002549407.1 CDS Avi_1959 NC_011989.1 1617561 1618121 D hypothetical protein 1617561..1618121 Agrobacterium vitis S4 7387248 YP_002549408.1 CDS Avi_1961 NC_011989.1 1618118 1618411 D hypothetical protein 1618118..1618411 Agrobacterium vitis S4 7387249 YP_002549409.1 CDS Avi_1963 NC_011989.1 1618408 1619691 D hypothetical protein 1618408..1619691 Agrobacterium vitis S4 7387250 YP_002549410.1 CDS Avi_1964 NC_011989.1 1619678 1620334 D Transcription antiterminator protein 1619678..1620334 Agrobacterium vitis S4 7387251 YP_002549411.1 CDS Avi_1966 NC_011989.1 1621003 1621470 D Phage terminase 1621003..1621470 Agrobacterium vitis S4 7387252 YP_002549412.1 CDS Avi_1967 NC_011989.1 1621454 1623268 D Phage terminase 1621454..1623268 Agrobacterium vitis S4 7387253 YP_002549413.1 CDS Avi_1968 NC_011989.1 1623281 1624588 D hypothetical protein 1623281..1624588 Agrobacterium vitis S4 7387254 YP_002549414.1 CDS Avi_1969 NC_011989.1 1624563 1625159 D prohead protease 1624563..1625159 Agrobacterium vitis S4 7387255 YP_002549415.1 CDS Avi_1970 NC_011989.1 1625195 1626472 D major capsid-like protein 1625195..1626472 Agrobacterium vitis S4 7387256 YP_002549416.1 CDS Avi_1973 NC_011989.1 1626811 1627359 D hypothetical protein 1626811..1627359 Agrobacterium vitis S4 7387257 YP_002549417.1 CDS Avi_1977 NC_011989.1 1627890 1628351 D hypothetical protein 1627890..1628351 Agrobacterium vitis S4 7387258 YP_002549418.1 CDS Avi_1978 NC_011989.1 1628348 1628755 D hypothetical protein 1628348..1628755 Agrobacterium vitis S4 7387259 YP_002549419.1 CDS Avi_1979 NC_011989.1 1628782 1629225 D hypothetical protein 1628782..1629225 Agrobacterium vitis S4 7387260 YP_002549420.1 CDS rfbA NC_011989.1 1629965 1630828 R glucose-1-phosphate thymidylyltransferase complement(1629965..1630828) Agrobacterium vitis S4 7387261 YP_002549421.1 CDS rfbD NC_011989.1 1630906 1631811 R dTDP-4-dehydrorhamnose reductase complement(1630906..1631811) Agrobacterium vitis S4 7387262 YP_002549422.1 CDS rfbB NC_011989.1 1631808 1632866 R dTDP-glucose 4,6-dehydratase complement(1631808..1632866) Agrobacterium vitis S4 7387263 YP_002549423.1 CDS rfbC NC_011989.1 1632921 1633484 R dTDP-4-dehydrorhamnose 3,5-epimerase complement(1632921..1633484) Agrobacterium vitis S4 7387264 YP_002549424.1 CDS Avi_1989 NC_011989.1 1633668 1633850 R endo-polygalacturonase precursor protein complement(1633668..1633850) Agrobacterium vitis S4 7387265 YP_002549425.1 CDS Avi_1990 NC_011989.1 1633917 1636664 D tail component of prophage protein 1633917..1636664 Agrobacterium vitis S4 7387266 YP_002549426.1 CDS Avi_1991 NC_011989.1 1636661 1637287 D hypothetical protein 1636661..1637287 Agrobacterium vitis S4 7387267 YP_002549427.1 CDS Avi_1992 NC_011989.1 1637287 1637973 D hypothetical protein 1637287..1637973 Agrobacterium vitis S4 7387268 YP_002549428.1 CDS Avi_1994 NC_011989.1 1638261 1642955 D phage tail fiber protein 1638261..1642955 Agrobacterium vitis S4 7387269 YP_002549429.1 CDS Avi_1995 NC_011989.1 1642952 1644448 D hypothetical protein 1642952..1644448 Agrobacterium vitis S4 7387270 YP_002549430.1 CDS Avi_1996 NC_011989.1 1644464 1645069 D hypothetical protein 1644464..1645069 Agrobacterium vitis S4 7387271 YP_002549431.1 CDS Avi_1998 NC_011989.1 1645317 1645676 R hypothetical protein complement(1645317..1645676) Agrobacterium vitis S4 7387757 YP_002549432.1 CDS Avi_2000 NC_011989.1 1645680 1645931 R hypothetical protein complement(1645680..1645931) Agrobacterium vitis S4 7386830 YP_002549433.1 CDS Avi_2001 NC_011989.1 1646008 1646625 D hypothetical protein 1646008..1646625 Agrobacterium vitis S4 7386831 YP_002549434.1 CDS Avi_2003 NC_011989.1 1646861 1647298 D HlyD family secretion protein 1646861..1647298 Agrobacterium vitis S4 7386832 YP_002549435.1 CDS Avi_2005 NC_011989.1 1647482 1647868 D hypothetical protein 1647482..1647868 Agrobacterium vitis S4 7386833 YP_002549436.1 CDS Avi_2007 NC_011989.1 1647964 1649505 R hypothetical protein complement(1647964..1649505) Agrobacterium vitis S4 7386834 YP_002549437.1 CDS Avi_2009 NC_011989.1 1649513 1651945 R glycosyl transferase complement(1649513..1651945) Agrobacterium vitis S4 7386835 YP_002549438.1 CDS Avi_2010 NC_011989.1 1652280 1654316 R hypothetical protein complement(1652280..1654316) Agrobacterium vitis S4 7386836 YP_002549439.1 CDS Avi_2012 NC_011989.1 1655088 1656101 R transposase complement(1655088..1656101) Agrobacterium vitis S4 7386837 YP_002549440.1 CDS pemI NC_011989.1 1656524 1656787 D plasmid stable inheritance protein I 1656524..1656787 Agrobacterium vitis S4 7386838 YP_002549441.1 CDS pemK NC_011989.1 1656784 1657146 D plasmid stable inheritance protein K 1656784..1657146 Agrobacterium vitis S4 7387968 YP_002549442.1 CDS Avi_2013 NC_011989.1 1657659 1658366 R hypothetical protein complement(1657659..1658366) Agrobacterium vitis S4 7387969 YP_002549443.1 CDS Avi_2014 NC_011989.1 1658370 1658567 R hypothetical protein complement(1658370..1658567) Agrobacterium vitis S4 7386839 YP_002549444.1 CDS cobS NC_011989.1 1658577 1659356 R catalyzes the formation of adenosylcobalamin from Ado-cobinamide-GDP and alpha-ribazole; cobalamin synthase complement(1658577..1659356) Agrobacterium vitis S4 7386840 YP_002549445.1 CDS cobT NC_011989.1 1659670 1660692 D catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide and 5,6-dimethylbenzimidazole; nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 1659670..1660692 Agrobacterium vitis S4 7386841 YP_002549446.1 CDS dgk NC_011989.1 1660676 1661125 D diacylglycerol kinase 1660676..1661125 Agrobacterium vitis S4 7386842 YP_002549447.1 CDS Avi_2021 NC_011989.1 1661157 1661399 D hypothetical protein 1661157..1661399 Agrobacterium vitis S4 7386843 YP_002549448.1 CDS Avi_2022 NC_011989.1 1661670 1661987 D hypothetical protein 1661670..1661987 Agrobacterium vitis S4 7386844 YP_002549449.1 CDS Avi_2023 NC_011989.1 1662142 1663575 D Carbohydrate-selective porin protein 1662142..1663575 Agrobacterium vitis S4 7386845 YP_002549450.1 CDS Avi_2024 NC_011989.1 1663630 1664217 R hypothetical protein complement(1663630..1664217) Agrobacterium vitis S4 7386846 YP_002549451.1 CDS def NC_011989.1 1664245 1664745 R peptide deformylase complement(1664245..1664745) Agrobacterium vitis S4 7386847 YP_002549452.1 CDS fnrN NC_011989.1 1664764 1665489 R transcriptional activator Crp family complement(1664764..1665489) Agrobacterium vitis S4 7386848 YP_002549453.1 CDS hemN NC_011989.1 1665809 1667161 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1665809..1667161 Agrobacterium vitis S4 7386849 YP_002549454.1 CDS acpP NC_011989.1 1667269 1667547 D Involved in the biosynthetic pathways of fatty acids, phospholipids, lipopolysaccharides, and oligosaccharides; acyl carrier protein 1667269..1667547 Agrobacterium vitis S4 7386850 YP_002549455.1 CDS Avi_2030 NC_011989.1 1667630 1668103 D (3R)-hydroxymyristoyl-ACP dehydratase 1667630..1668103 Agrobacterium vitis S4 7386851 YP_002549456.1 CDS Avi_2033 NC_011989.1 1668394 1669599 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase 1668394..1669599 Agrobacterium vitis S4 7386852 YP_002549457.1 CDS fabF NC_011989.1 1669610 1670911 D FabF, beta-Ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP.; 3-oxoacyl-ACP synthase 1669610..1670911 Agrobacterium vitis S4 7386853 YP_002549458.1 CDS Avi_2036 NC_011989.1 1670988 1672016 D NADPH:quinone reductase 1670988..1672016 Agrobacterium vitis S4 7386854 YP_002549459.1 CDS msbB NC_011989.1 1672019 1672951 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1672019..1672951 Agrobacterium vitis S4 7386855 YP_002549460.1 CDS Avi_2038 NC_011989.1 1672935 1673915 R hypothetical protein complement(1672935..1673915) Agrobacterium vitis S4 7386856 YP_002549461.1 CDS nadE NC_011989.1 1674583 1676262 D NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 1674583..1676262 Agrobacterium vitis S4 7386857 YP_002549462.1 CDS tolB NC_011989.1 1676270 1677103 D periplasmic component of the Tol biopolymer transport system 1676270..1677103 Agrobacterium vitis S4 7386858 YP_002549463.1 CDS Avi_2042 NC_011989.1 1677382 1678068 D nitroreductase 1677382..1678068 Agrobacterium vitis S4 7386859 YP_002549464.1 CDS Avi_2043 NC_011989.1 1678146 1678730 R transcriptional regulatory protein complement(1678146..1678730) Agrobacterium vitis S4 7386860 YP_002549465.1 CDS Avi_2044 NC_011989.1 1678862 1679776 D ABC transporter permease 1678862..1679776 Agrobacterium vitis S4 7386861 YP_002549466.1 CDS ada NC_011989.1 1679773 1680279 D methylated-DNA--protein- cysteinemethyltransferase 1679773..1680279 Agrobacterium vitis S4 7386862 YP_002549467.1 CDS tyrS NC_011989.1 1680361 1681617 R tyrosyl-tRNA synthetase complement(1680361..1681617) Agrobacterium vitis S4 7386863 YP_002549468.1 CDS anmK NC_011989.1 1681789 1683378 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 1681789..1683378 Agrobacterium vitis S4 7386864 YP_002549469.1 CDS Avi_2049 NC_011989.1 1683430 1683774 R hypothetical protein complement(1683430..1683774) Agrobacterium vitis S4 7386865 YP_002549470.1 CDS Avi_2050 NC_011989.1 1684098 1684409 D hypothetical protein 1684098..1684409 Agrobacterium vitis S4 7387180 YP_002549471.1 CDS Avi_2051 NC_011989.1 1684429 1685964 R two component sensor kinase complement(1684429..1685964) Agrobacterium vitis S4 7386867 YP_002549472.1 CDS exoI NC_011989.1 1686095 1686610 D succinoglycan biosynthesis protein 1686095..1686610 Agrobacterium vitis S4 7386868 YP_002549473.1 CDS Avi_2054 NC_011989.1 1686607 1687242 D hypothetical protein 1686607..1687242 Agrobacterium vitis S4 7386869 YP_002549474.1 CDS Avi_2055 NC_011989.1 1687308 1687796 D transcriptional regulator AsnC family 1687308..1687796 Agrobacterium vitis S4 7386870 YP_002549475.1 CDS mmsB NC_011989.1 1687834 1688703 R 3-hydroxyisobutyrate dehydrogenase complement(1687834..1688703) Agrobacterium vitis S4 7386871 YP_002549476.1 CDS pip NC_011989.1 1688809 1689783 R proline iminopeptidase complement(1688809..1689783) Agrobacterium vitis S4 7386872 YP_002549477.1 CDS Avi_2059 NC_011989.1 1689805 1690530 R hypothetical protein complement(1689805..1690530) Agrobacterium vitis S4 7386873 YP_002549478.1 CDS usg NC_011989.1 1690810 1691118 R usg protein complement(1690810..1691118) Agrobacterium vitis S4 7386874 YP_002549479.1 CDS Avi_2064 NC_011989.1 1691310 1692140 R amino acid ABC transporter permease complement(1691310..1692140) Agrobacterium vitis S4 7386875 YP_002549480.1 CDS Avi_2065 NC_011989.1 1692137 1692940 R amino acid ABC transporter permease complement(1692137..1692940) Agrobacterium vitis S4 7386876 YP_002549481.1 CDS Avi_2066 NC_011989.1 1693035 1693811 R amino acid ABC transporter substrate-binding protein complement(1693035..1693811) Agrobacterium vitis S4 7386877 YP_002549482.1 CDS Avi_2068 NC_011989.1 1694076 1696718 D OmpA family protein 1694076..1696718 Agrobacterium vitis S4 7386878 YP_002549483.1 CDS mobB NC_011989.1 1696766 1697293 R molybdopterin-guanine dinucleotide biosynthesis protein B complement(1696766..1697293) Agrobacterium vitis S4 7386879 YP_002549484.1 CDS mobA NC_011989.1 1697280 1697921 R molybdopterin-guanine dinucleotide biosynthesis protein A complement(1697280..1697921) Agrobacterium vitis S4 7386880 YP_002549485.1 CDS Avi_2071 NC_011989.1 1697936 1698829 R hypothetical protein complement(1697936..1698829) Agrobacterium vitis S4 7386881 YP_002549486.1 CDS moaA NC_011989.1 1698932 1699921 R molybdenum cofactor biosynthesis protein A complement(1698932..1699921) Agrobacterium vitis S4 7386882 YP_002549487.1 CDS Avi_2074 NC_011989.1 1700376 1700741 D hypothetical protein 1700376..1700741 Agrobacterium vitis S4 7386883 YP_002549488.1 CDS Avi_2075 NC_011989.1 1700760 1701764 R GGDEF protein complement(1700760..1701764) Agrobacterium vitis S4 7386884 YP_002549489.1 CDS Avi_2076 NC_011989.1 1702011 1703615 R fumarate hydratase class I complement(1702011..1703615) Agrobacterium vitis S4 7386885 YP_002549490.1 CDS fumC NC_011989.1 1703744 1705135 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(1703744..1705135) Agrobacterium vitis S4 7386886 YP_002549491.1 CDS Avi_2078 NC_011989.1 1705531 1707375 D hypothetical protein 1705531..1707375 Agrobacterium vitis S4 7386887 YP_002549492.1 CDS gph NC_011989.1 1707442 1708155 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(1707442..1708155) Agrobacterium vitis S4 7386888 YP_002549493.1 CDS rpiA NC_011989.1 1708377 1709075 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1708377..1709075 Agrobacterium vitis S4 7386889 YP_002549494.1 CDS Avi_2083 NC_011989.1 1709161 1709748 R hypothetical protein complement(1709161..1709748) Agrobacterium vitis S4 7386890 YP_002549495.1 CDS gor NC_011989.1 1710036 1711424 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 1710036..1711424 Agrobacterium vitis S4 7386891 YP_002549496.1 CDS dhs NC_011989.1 1711720 1712997 D 2-dehydro-3-deoxyphosphoheptonate aldolase 1711720..1712997 Agrobacterium vitis S4 7386892 YP_002549497.1 CDS Avi_2088 NC_011989.1 1713156 1713662 R hypothetical protein complement(1713156..1713662) Agrobacterium vitis S4 7386893 YP_002549498.1 CDS ccoN NC_011989.1 1714386 1716035 D CcoN; FixN; cbb3-type cytochrome c oxidase subunit I 1714386..1716035 Agrobacterium vitis S4 7386894 YP_002549499.1 CDS ccoO NC_011989.1 1716046 1716777 D cytochrome c oxidase cbb3-type subunit II 1716046..1716777 Agrobacterium vitis S4 7386895 YP_002549500.1 CDS fixQ NC_011989.1 1716752 1716949 D cytochrome c oxidase FixQ chain 1716752..1716949 Agrobacterium vitis S4 7386896 YP_002549501.1 CDS ccoP NC_011989.1 1716952 1717815 D cytochrome c oxidase cbb3-type subunit III 1716952..1717815 Agrobacterium vitis S4 7386897 YP_002549502.1 CDS Avi_2097 NC_011989.1 1717933 1718286 R bleomycin resistance protein complement(1717933..1718286) Agrobacterium vitis S4 7386898 YP_002549503.1 CDS Avi_2098 NC_011989.1 1718632 1720569 D GGDEF family protein 1718632..1720569 Agrobacterium vitis S4 7386899 YP_002549504.1 CDS uvrB NC_011989.1 1720710 1723715 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1720710..1723715 Agrobacterium vitis S4 7386900 YP_002549505.1 CDS ggt NC_011989.1 1724004 1725626 R gamma-glutamyltransferase complement(1724004..1725626) Agrobacterium vitis S4 7386901 YP_002549506.1 CDS Avi_2101 NC_011989.1 1725811 1727010 D hydrolase 1725811..1727010 Agrobacterium vitis S4 7386902 YP_002549507.1 CDS Avi_2102 NC_011989.1 1727106 1728326 D aminohydrolase 1727106..1728326 Agrobacterium vitis S4 7386903 YP_002549508.1 CDS Avi_2104 NC_011989.1 1728426 1729106 D hypothetical protein 1728426..1729106 Agrobacterium vitis S4 7386904 YP_002549509.1 CDS Avi_2106 NC_011989.1 1729135 1729986 D hypothetical protein 1729135..1729986 Agrobacterium vitis S4 7386905 YP_002549510.1 CDS kdsA NC_011989.1 1729983 1730837 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1729983..1730837 Agrobacterium vitis S4 7386906 YP_002549511.1 CDS eno NC_011989.1 1730924 1732198 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1730924..1732198 Agrobacterium vitis S4 7386907 YP_002549512.1 CDS Avi_2110 NC_011989.1 1732380 1732691 D hypothetical protein 1732380..1732691 Agrobacterium vitis S4 7386908 YP_002549513.1 CDS pdhA NC_011989.1 1732893 1733939 D pyruvate dehydrogenase alpha subunit 1732893..1733939 Agrobacterium vitis S4 7386909 YP_002549514.1 CDS pdhB NC_011989.1 1733960 1735345 D catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 1733960..1735345 Agrobacterium vitis S4 7386910 YP_002549515.1 CDS Avi_2115 NC_011989.1 1735361 1736695 D pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 1735361..1736695 Agrobacterium vitis S4 7386911 YP_002549516.1 CDS ada NC_011989.1 1737162 1737800 D methylated-DNA--protein- cysteinemethyltransferase 1737162..1737800 Agrobacterium vitis S4 7387841 YP_002549517.1 CDS Avi_2119 NC_011989.1 1737898 1738164 D hypothetical protein 1737898..1738164 Agrobacterium vitis S4 7387842 YP_002549518.1 CDS lpdA NC_011989.1 1738242 1739687 D E3 component of pyruvate complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1738242..1739687 Agrobacterium vitis S4 7387843 YP_002549519.1 CDS Avi_2122 NC_011989.1 1739758 1740006 D hypothetical protein 1739758..1740006 Agrobacterium vitis S4 7387844 YP_002549520.1 CDS lipA NC_011989.1 1740045 1741016 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 1740045..1741016 Agrobacterium vitis S4 7387845 YP_002549521.1 CDS Avi_2124 NC_011989.1 1741098 1741673 D hypothetical protein 1741098..1741673 Agrobacterium vitis S4 7387846 YP_002549522.1 CDS Avi_2125 NC_011989.1 1741676 1742245 D hypothetical protein 1741676..1742245 Agrobacterium vitis S4 7387847 YP_002549523.1 CDS Avi_2127 NC_011989.1 1742263 1743588 R sugar ABC transporter permease complement(1742263..1743588) Agrobacterium vitis S4 7387848 YP_002549524.1 CDS Avi_2128 NC_011989.1 1743832 1744284 D hypothetical protein 1743832..1744284 Agrobacterium vitis S4 7387849 YP_002549525.1 CDS Avi_2129 NC_011989.1 1744269 1745024 R hypothetical protein complement(1744269..1745024) Agrobacterium vitis S4 7387850 YP_002549526.1 CDS cinA NC_011989.1 1745148 1745654 R competence-damage associated protein complement(1745148..1745654) Agrobacterium vitis S4 7387851 YP_002549527.1 CDS ispDF NC_011989.1 1745651 1746874 R bifunctional enzyme involved in formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate and 2-C-methyl-D-erythritol 2,4-cyclodiphosphate and CMP from 4-diphosphocytidyl-2-C-methyl-D-erythritol 2-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; binds divalent cations; bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein complement(1745651..1746874) Agrobacterium vitis S4 7387852 YP_002549528.1 CDS nifR NC_011989.1 1747040 1748038 D nitrogen regulation protein 1747040..1748038 Agrobacterium vitis S4 7387853 YP_002549529.1 CDS ntrB NC_011989.1 1748035 1749180 D two component sensor kinase 1748035..1749180 Agrobacterium vitis S4 7387854 YP_002549530.1 CDS ntrC NC_011989.1 1749177 1750628 D nitrogen regulation protein NR(I) 1749177..1750628 Agrobacterium vitis S4 7387855 YP_002549531.1 CDS ntrY NC_011989.1 1750835 1753114 D two component sensor kinase 1750835..1753114 Agrobacterium vitis S4 7387856 YP_002549532.1 CDS ntrX NC_011989.1 1753104 1754468 D two component response regulator 1753104..1754468 Agrobacterium vitis S4 7387857 YP_002549533.1 CDS hfq NC_011989.1 1754575 1754904 D RNA chaperone Hfq 1754575..1754904 Agrobacterium vitis S4 7387858 YP_002549534.1 CDS hflx NC_011989.1 1755062 1756396 D GTP-binding protein HFLX 1755062..1756396 Agrobacterium vitis S4 7387859 YP_002549535.1 CDS Avi_2143 NC_011989.1 1756418 1757488 R hypothetical protein complement(1756418..1757488) Agrobacterium vitis S4 7387860 YP_002549536.1 CDS mazG NC_011989.1 1757700 1758542 R functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase Era; nucleoside triphosphate pyrophosphohydrolase complement(1757700..1758542) Agrobacterium vitis S4 7387861 YP_002549537.1 CDS Avi_2145 NC_011989.1 1758566 1759153 R hypothetical protein complement(1758566..1759153) Agrobacterium vitis S4 7387862 YP_002549538.1 CDS cysG NC_011989.1 1759428 1760885 D siroheme synthase 1759428..1760885 Agrobacterium vitis S4 7387863 YP_002549539.1 CDS Avi_2147 NC_011989.1 1760888 1761202 D hypothetical protein 1760888..1761202 Agrobacterium vitis S4 7387864 YP_002549540.1 CDS cysI NC_011989.1 1761319 1762992 D sulfite reductase (NADPH) hemoprotein beta-component 1761319..1762992 Agrobacterium vitis S4 7387865 YP_002549541.1 CDS Avi_2149 NC_011989.1 1763004 1763510 D hypothetical protein 1763004..1763510 Agrobacterium vitis S4 7387866 YP_002549542.1 CDS mvrA NC_011989.1 1763751 1764563 D ferredoxin NADP+ reductase 1763751..1764563 Agrobacterium vitis S4 7387867 YP_002549543.1 CDS fabG NC_011989.1 1764712 1765416 D 3-oxoacyl-ACP reductase 1764712..1765416 Agrobacterium vitis S4 7387868 YP_002549544.1 CDS rlpA NC_011989.1 1765636 1766784 D rare lipoprotein A 1765636..1766784 Agrobacterium vitis S4 7387869 YP_002549545.1 CDS dacF NC_011989.1 1766928 1768163 D D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein 1766928..1768163 Agrobacterium vitis S4 7387870 YP_002549546.1 CDS tmk NC_011989.1 1768385 1769050 D thymidylate kinase 1768385..1769050 Agrobacterium vitis S4 7387871 YP_002549547.1 CDS holB NC_011989.1 1769034 1770074 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1769034..1770074 Agrobacterium vitis S4 7387872 YP_002549548.1 CDS Avi_2157 NC_011989.1 1770082 1770852 R permease complement(1770082..1770852) Agrobacterium vitis S4 7387873 YP_002549549.1 CDS metS NC_011989.1 1771057 1772634 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 1771057..1772634 Agrobacterium vitis S4 7387874 YP_002549550.1 CDS Avi_2159 NC_011989.1 1772734 1773420 D hypothetical protein 1772734..1773420 Agrobacterium vitis S4 7387875 YP_002549551.1 CDS Avi_2160 NC_011989.1 1773428 1774246 D metal dependent hydrolase 1773428..1774246 Agrobacterium vitis S4 7387876 YP_002549552.1 CDS clc NC_011989.1 1774281 1776065 D chloride channel protein 1774281..1776065 Agrobacterium vitis S4 7387877 YP_002549553.1 CDS ccdA NC_011989.1 1776379 1777125 D cytochrome c-type biogenesis protein 1776379..1777125 Agrobacterium vitis S4 7387179 YP_002549554.1 CDS ubiH NC_011989.1 1777150 1778358 R 2-octaprenyl-6-methoxyphenyl hydroxylase complement(1777150..1778358) Agrobacterium vitis S4 7387879 YP_002549555.1 CDS pcs NC_011989.1 1778556 1779281 D phosphatidylcholine synthase 1778556..1779281 Agrobacterium vitis S4 7387880 YP_002549556.1 CDS Avi_2166 NC_011989.1 1779451 1781049 D ABC transporter nucleotide binding/ATPase (sugar) 1779451..1781049 Agrobacterium vitis S4 7387881 YP_002549557.1 CDS Avi_2167 NC_011989.1 1781033 1782136 D sugar ABC transporter permease 1781033..1782136 Agrobacterium vitis S4 7387882 YP_002549558.1 CDS Avi_2168 NC_011989.1 1782133 1783050 D sugar ABC transporter permease 1782133..1783050 Agrobacterium vitis S4 7387883 YP_002549559.1 CDS Avi_2169 NC_011989.1 1783104 1784177 D lipoprotein 1783104..1784177 Agrobacterium vitis S4 7387884 YP_002549560.1 CDS glmU NC_011989.1 1784291 1785649 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 1784291..1785649 Agrobacterium vitis S4 7387885 YP_002549561.1 CDS glmS NC_011989.1 1785821 1787647 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 1785821..1787647 Agrobacterium vitis S4 7387886 YP_002549562.1 CDS Avi_2172 NC_011989.1 1787764 1788471 D hypothetical protein 1787764..1788471 Agrobacterium vitis S4 7387887 YP_002549563.1 CDS Avi_2173 NC_011989.1 1788629 1790104 D hypothetical protein 1788629..1790104 Agrobacterium vitis S4 7387888 YP_002549564.1 CDS Avi_2174 NC_011989.1 1790360 1791175 R hypothetical protein complement(1790360..1791175) Agrobacterium vitis S4 7387889 YP_002549565.1 CDS Avi_2178 NC_011989.1 1791277 1792143 R ABC transporter permease complement(1791277..1792143) Agrobacterium vitis S4 7387890 YP_002549566.1 CDS Avi_2179 NC_011989.1 1792140 1792994 R ABC transporter permease complement(1792140..1792994) Agrobacterium vitis S4 7387891 YP_002549567.1 CDS Avi_2180 NC_011989.1 1792994 1794034 R ABC transporter ATPase complement(1792994..1794034) Agrobacterium vitis S4 7387892 YP_002549568.1 CDS Avi_2181 NC_011989.1 1794068 1795297 R ABC transporter substrate-binding protein complement(1794068..1795297) Agrobacterium vitis S4 7387893 YP_002549569.1 CDS Avi_2182 NC_011989.1 1795436 1796584 D transcriptional regulator ROK family 1795436..1796584 Agrobacterium vitis S4 7387894 YP_002549570.1 CDS Avi_2183 NC_011989.1 1796597 1797811 R hypothetical protein complement(1796597..1797811) Agrobacterium vitis S4 7387895 YP_002549571.1 CDS znuA NC_011989.1 1797896 1798822 R ABC transporter substrate binding protein (zinc) complement(1797896..1798822) Agrobacterium vitis S4 7387896 YP_002549572.1 CDS znuC NC_011989.1 1799008 1799958 D ABC transporter nucleotide binding/ATPase (zinc) 1799008..1799958 Agrobacterium vitis S4 7387897 YP_002549573.1 CDS znuB NC_011989.1 1799948 1800760 D zinc ABC transporter permease 1799948..1800760 Agrobacterium vitis S4 7387898 YP_002549574.1 CDS zur NC_011989.1 1800765 1801166 D transcriptional regulator Fur family 1800765..1801166 Agrobacterium vitis S4 7387899 YP_002549575.1 CDS Avi_2190 NC_011989.1 1801260 1801805 R hypothetical protein complement(1801260..1801805) Agrobacterium vitis S4 7387900 YP_002549576.1 CDS Avi_2191 NC_011989.1 1801924 1802292 R hypothetical protein complement(1801924..1802292) Agrobacterium vitis S4 7387901 YP_002549577.1 CDS Avi_2192 NC_011989.1 1802475 1802762 R hypothetical protein complement(1802475..1802762) Agrobacterium vitis S4 7387902 YP_002549578.1 CDS dacF NC_011989.1 1802853 1804307 R D-alanyl-D-alanine carboxypeptidase 1 penicillin-binding protein complement(1802853..1804307) Agrobacterium vitis S4 7387903 YP_002549579.1 CDS Avi_2196 NC_011989.1 1804557 1805312 R hypothetical protein complement(1804557..1805312) Agrobacterium vitis S4 7387904 YP_002549580.1 CDS Avi_2198 NC_011989.1 1805600 1806121 R hypothetical protein complement(1805600..1806121) Agrobacterium vitis S4 7387905 YP_002549581.1 CDS Avi_2200 NC_011989.1 1806834 1807445 R hypothetical protein complement(1806834..1807445) Agrobacterium vitis S4 7387906 YP_002549582.1 CDS Avi_2201 NC_011989.1 1807666 1809591 R serine protease complement(1807666..1809591) Agrobacterium vitis S4 7387907 YP_002549583.1 CDS Avi_2202 NC_011989.1 1809879 1810670 D hypothetical protein 1809879..1810670 Agrobacterium vitis S4 7387908 YP_002549584.1 CDS Avi_2203 NC_011989.1 1810809 1811243 D hypothetical protein 1810809..1811243 Agrobacterium vitis S4 7387909 YP_002549585.1 CDS Avi_2204 NC_011989.1 1811417 1812367 R hypothetical protein complement(1811417..1812367) Agrobacterium vitis S4 7387910 YP_002549586.1 CDS hisI NC_011989.1 1812670 1813128 R PR-AMP cyclohydrolase; functions in histidine biosynthesis from PRPP; converts 1-(5-phosphoribosyl)-AMP to 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxyamide during the histidine biosynthesis pathway; binds zinc and magnesium; forms homodimers; phosphoribosyl-AMP cyclohydrolase complement(1812670..1813128) Agrobacterium vitis S4 7387911 YP_002549587.1 CDS folE NC_011989.1 1813227 1813832 R GTP cyclohydrolase I complement(1813227..1813832) Agrobacterium vitis S4 7387912 YP_002549588.1 CDS nifU NC_011989.1 1814105 1814548 D NIFU-like protein 1814105..1814548 Agrobacterium vitis S4 7387913 YP_002549589.1 CDS Avi_2209 NC_011989.1 1814562 1814948 D hypothetical protein 1814562..1814948 Agrobacterium vitis S4 7387914 YP_002549590.1 CDS thrS NC_011989.1 1815138 1817138 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 1815138..1817138 Agrobacterium vitis S4 7387915 YP_002549591.1 CDS Avi_2213 NC_011989.1 1817189 1817725 R hypothetical protein complement(1817189..1817725) Agrobacterium vitis S4 7387916 YP_002549592.1 CDS Avi_2214 NC_011989.1 1817955 1818908 D hypothetical protein 1817955..1818908 Agrobacterium vitis S4 7387917 YP_002549593.1 CDS nadA NC_011989.1 1819078 1820049 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 1819078..1820049 Agrobacterium vitis S4 7387918 YP_002549594.1 CDS nadB NC_011989.1 1820046 1821596 D L-aspartate oxidase 1820046..1821596 Agrobacterium vitis S4 7387919 YP_002549595.1 CDS nadC NC_011989.1 1821598 1822455 D catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 1821598..1822455 Agrobacterium vitis S4 7387920 YP_002549596.1 CDS Avi_2219 NC_011989.1 1822462 1823448 R hypothetical protein complement(1822462..1823448) Agrobacterium vitis S4 7387921 YP_002549597.1 CDS Avi_2220 NC_011989.1 1823671 1824255 D nitroreductase family protein 1823671..1824255 Agrobacterium vitis S4 7387922 YP_002549598.1 CDS Avi_2221 NC_011989.1 1824255 1824860 D hypothetical protein 1824255..1824860 Agrobacterium vitis S4 7387923 YP_002549599.1 CDS Avi_2222 NC_011989.1 1824849 1825574 R hypothetical protein complement(1824849..1825574) Agrobacterium vitis S4 7387925 YP_002549600.1 CDS Avi_2223 NC_011989.1 1825637 1826785 D hypothetical protein 1825637..1826785 Agrobacterium vitis S4 7386329 YP_002549601.1 CDS Avi_2224 NC_011989.1 1826823 1827221 R hypothetical protein complement(1826823..1827221) Agrobacterium vitis S4 7386330 YP_002549602.1 CDS Avi_2225 NC_011989.1 1827359 1827844 D acetyltransferase 1827359..1827844 Agrobacterium vitis S4 7386331 YP_002549603.1 CDS gyrB NC_011989.1 1827876 1829984 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(1827876..1829984) Agrobacterium vitis S4 7386332 YP_002549604.1 CDS Avi_2227 NC_011989.1 1830302 1831195 D hypothetical protein 1830302..1831195 Agrobacterium vitis S4 7386333 YP_002549605.1 CDS Avi_2229 NC_011989.1 1831236 1832432 R GGDEF domain protein complement(1831236..1832432) Agrobacterium vitis S4 7386334 YP_002549606.1 CDS tpiA NC_011989.1 1832793 1833563 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 1832793..1833563 Agrobacterium vitis S4 7386335 YP_002549607.1 CDS secG NC_011989.1 1833661 1834047 D protein-export membrane protein SECG 1833661..1834047 Agrobacterium vitis S4 7386336 YP_002549608.1 CDS pyrG NC_011989.1 1834134 1835801 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1834134..1835801 Agrobacterium vitis S4 7386337 YP_002549609.1 CDS Avi_2236 NC_011989.1 1835984 1837006 D amide hydrolase 1835984..1837006 Agrobacterium vitis S4 7386338 YP_002549610.1 CDS Avi_2237 NC_011989.1 1837030 1837941 D agmatinase 1837030..1837941 Agrobacterium vitis S4 7386339 YP_002549611.1 CDS Avi_2239 NC_011989.1 1838036 1844794 R hypothetical protein complement(1838036..1844794) Agrobacterium vitis S4 7386340 YP_002549612.1 CDS Avi_2241 NC_011989.1 1845289 1845657 D hypothetical protein 1845289..1845657 Agrobacterium vitis S4 7386341 YP_002549613.1 CDS fdx NC_011989.1 1845873 1846193 D ferrodoxin 1845873..1846193 Agrobacterium vitis S4 7386342 YP_002549614.1 CDS Avi_2245 NC_011989.1 1846266 1846940 R hypothetical protein complement(1846266..1846940) Agrobacterium vitis S4 7386343 YP_002549615.1 CDS folP NC_011989.1 1847201 1848094 D dihydropteroate synthase 1847201..1848094 Agrobacterium vitis S4 7386344 YP_002549616.1 CDS folB NC_011989.1 1848087 1848455 D dihydroneopterin aldolase 1848087..1848455 Agrobacterium vitis S4 7386345 YP_002549617.1 CDS folK NC_011989.1 1848466 1848966 D 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 1848466..1848966 Agrobacterium vitis S4 7386346 YP_002549618.1 CDS gcvP NC_011989.1 1849878 1852742 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase complement(1849878..1852742) Agrobacterium vitis S4 7386347 YP_002549619.1 CDS gcvH NC_011989.1 1852739 1853101 R part of multienzyme complex composed of H, L, P, and T proteins which catalyzes oxidation of glycine to yield carbon dioxide, ammonia, 5,10-CH2-H4folate and a reduced pyridine nucleotide; protein H is involved in transfer of methylamine group from the P to T protein; covalently bound to a lipoyl cofactor; glycine cleavage system protein H complement(1852739..1853101) Agrobacterium vitis S4 7386348 YP_002549620.1 CDS gcvT NC_011989.1 1853118 1854257 R catalyzes the transfer of a methylene carbon from the methylamine-loaded GcvH protein to tetrahydrofolate, causing the release of ammonia and the generation of reduced GcvH protein; glycine cleavage system aminomethyltransferase T complement(1853118..1854257) Agrobacterium vitis S4 7386349 YP_002549621.1 CDS Avi_2255 NC_011989.1 1854760 1855272 D hypothetical protein 1854760..1855272 Agrobacterium vitis S4 7386350 YP_002549622.1 CDS Avi_2257 NC_011989.1 1855792 1856097 R hypothetical protein complement(1855792..1856097) Agrobacterium vitis S4 7386351 YP_002549623.1 CDS crcB NC_011989.1 1856306 1856683 D camphor resistance protein 1856306..1856683 Agrobacterium vitis S4 7386352 YP_002549624.1 CDS rluC NC_011989.1 1856814 1857806 D ribosomal large subunit pseudouridine synthase C 1856814..1857806 Agrobacterium vitis S4 7386353 YP_002549625.1 CDS Avi_2262 NC_011989.1 1857803 1858474 D hydrolase 1857803..1858474 Agrobacterium vitis S4 7386354 YP_002549626.1 CDS Avi_2263 NC_011989.1 1858467 1859252 D hypothetical protein 1858467..1859252 Agrobacterium vitis S4 7386355 YP_002549627.1 CDS Avi_2265 NC_011989.1 1859272 1859577 R hypothetical protein complement(1859272..1859577) Agrobacterium vitis S4 7386356 YP_002549628.1 CDS kgtP NC_011989.1 1859931 1861250 R MFS permease complement(1859931..1861250) Agrobacterium vitis S4 7386357 YP_002549629.1 CDS Avi_2268 NC_011989.1 1861713 1862339 D hypothetical protein 1861713..1862339 Agrobacterium vitis S4 7386358 YP_002549630.1 CDS flgE NC_011989.1 1862403 1862729 R flagellar hook protein complement(1862403..1862729) Agrobacterium vitis S4 7386359 YP_002549631.1 CDS radC NC_011989.1 1862850 1863686 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(1862850..1863686) Agrobacterium vitis S4 7386360 YP_002549632.1 CDS map NC_011989.1 1863690 1864526 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1863690..1864526) Agrobacterium vitis S4 7386361 YP_002549633.1 CDS Avi_2273 NC_011989.1 1864652 1865536 R LysR family transcriptional regulator complement(1864652..1865536) Agrobacterium vitis S4 7386362 YP_002549634.1 CDS Avi_2274 NC_011989.1 1865754 1866668 D hypothetical protein 1865754..1866668 Agrobacterium vitis S4 7386363 YP_002549635.1 CDS sfsA NC_011989.1 1866685 1867392 R sugar fermentation stimulation protein complement(1866685..1867392) Agrobacterium vitis S4 7386364 YP_002549636.1 CDS phbC NC_011989.1 1867417 1869387 R poly-beta-hydroxybutyrate synthase complement(1867417..1869387) Agrobacterium vitis S4 7386365 YP_002549637.1 CDS Avi_2277 NC_011989.1 1869608 1870030 D hypothetical protein 1869608..1870030 Agrobacterium vitis S4 7386366 YP_002549638.1 CDS Avi_2278 NC_011989.1 1870311 1871528 D aminotransferase 1870311..1871528 Agrobacterium vitis S4 7386367 YP_002549639.1 CDS hom NC_011989.1 1871598 1872920 D catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase 1871598..1872920 Agrobacterium vitis S4 7386368 YP_002549640.1 CDS recJ NC_011989.1 1872961 1874763 D single-stranded-DNA-specific exonuclease 1872961..1874763 Agrobacterium vitis S4 7386369 YP_002549641.1 CDS Avi_2282 NC_011989.1 1875573 1876499 R OmpA family protein complement(1875573..1876499) Agrobacterium vitis S4 7387176 YP_002549642.1 CDS gloA NC_011989.1 1876661 1877101 R lactoylglutathione lyase complement(1876661..1877101) Agrobacterium vitis S4 7386371 YP_002549643.1 CDS cspA NC_011989.1 1877410 1877988 D cold shock protein 1877410..1877988 Agrobacterium vitis S4 7386372 YP_002549644.1 CDS Avi_2287 NC_011989.1 1878014 1878481 D hypothetical protein 1878014..1878481 Agrobacterium vitis S4 7386373 YP_002549645.1 CDS Avi_2288 NC_011989.1 1878740 1879045 D hypothetical protein 1878740..1879045 Agrobacterium vitis S4 7388256 YP_002549646.1 CDS intD NC_011989.1 1879238 1880278 R phage-related integrase complement(1879238..1880278) Agrobacterium vitis S4 7387160 YP_002549647.1 CDS Avi_2291 NC_011989.1 1880498 1880944 R hypothetical protein complement(1880498..1880944) Agrobacterium vitis S4 7386376 YP_002549648.1 CDS dnaE NC_011989.1 1882221 1885514 R DNA polymerase III alpha chain complement(1882221..1885514) Agrobacterium vitis S4 7386377 YP_002549649.1 CDS Avi_2295 NC_011989.1 1885511 1886929 R hypothetical protein complement(1885511..1886929) Agrobacterium vitis S4 7386378 YP_002549650.1 CDS Avi_2296 NC_011989.1 1886943 1887695 R hypothetical protein complement(1886943..1887695) Agrobacterium vitis S4 7386379 YP_002549651.1 CDS Avi_2298 NC_011989.1 1888270 1889130 R gas vesicle protein complement(1888270..1889130) Agrobacterium vitis S4 7386380 YP_002549652.1 CDS Avi_2300 NC_011989.1 1889611 1890024 R hypothetical protein complement(1889611..1890024) Agrobacterium vitis S4 7386381 YP_002549653.1 CDS Avi_2301 NC_011989.1 1890441 1891022 R hypothetical protein complement(1890441..1891022) Agrobacterium vitis S4 7386382 YP_002549654.1 CDS Avi_2303 NC_011989.1 1891841 1892251 D Prophage antirepressor 1891841..1892251 Agrobacterium vitis S4 7386383 YP_002549655.1 CDS Avi_2306 NC_011989.1 1893402 1894172 D hypothetical protein 1893402..1894172 Agrobacterium vitis S4 7386384 YP_002549656.1 CDS Avi_2308 NC_011989.1 1894755 1895384 D hypothetical protein 1894755..1895384 Agrobacterium vitis S4 7386385 YP_002549657.1 CDS Avi_2309 NC_011989.1 1895629 1896231 D hypothetical protein 1895629..1896231 Agrobacterium vitis S4 7386386 YP_002549658.1 CDS Avi_2311 NC_011989.1 1896228 1898243 D Phage terminase large subunit (gp15) 1896228..1898243 Agrobacterium vitis S4 7386387 YP_002549659.1 CDS Avi_2312 NC_011989.1 1898240 1899877 D Bacteriophage capsid protein 1898240..1899877 Agrobacterium vitis S4 7386388 YP_002549660.1 CDS Avi_2314 NC_011989.1 1900153 1901073 D Periplasmic serine proteases (ClpP class) 1900153..1901073 Agrobacterium vitis S4 7386389 YP_002549661.1 CDS Avi_2316 NC_011989.1 1901078 1901671 D lytic murein transglycosylase 1901078..1901671 Agrobacterium vitis S4 7386390 YP_002549662.1 CDS Avi_2317 NC_011989.1 1901675 1902037 D hypothetical protein 1901675..1902037 Agrobacterium vitis S4 7386391 YP_002549663.1 CDS Avi_2319 NC_011989.1 1902049 1903065 D hypothetical protein 1902049..1903065 Agrobacterium vitis S4 7386392 YP_002549664.1 CDS Avi_2321 NC_011989.1 1903143 1903622 D membrane spanning protein 1903143..1903622 Agrobacterium vitis S4 7386393 YP_002549665.1 CDS Avi_2322 NC_011989.1 1903626 1903997 D hypothetical protein 1903626..1903997 Agrobacterium vitis S4 7386394 YP_002549666.1 CDS Avi_2324 NC_011989.1 1904782 1905324 D hypothetical protein 1904782..1905324 Agrobacterium vitis S4 7386395 YP_002549667.1 CDS Avi_2326 NC_011989.1 1905321 1905716 D baseplate protein 1905321..1905716 Agrobacterium vitis S4 7386396 YP_002549668.1 CDS Avi_2327 NC_011989.1 1905720 1906577 D Phage-related baseplate assembly protein 1905720..1906577 Agrobacterium vitis S4 7386397 YP_002549669.1 CDS Avi_2328 NC_011989.1 1906574 1907707 D Phage protein gp27 1906574..1907707 Agrobacterium vitis S4 7386398 YP_002549670.1 CDS Avi_2330 NC_011989.1 1907720 1910929 D Virulence-associated protein 1907720..1910929 Agrobacterium vitis S4 7386399 YP_002549671.1 CDS Avi_2331 NC_011989.1 1910939 1912096 D bacteriophage tail fiber protein 1910939..1912096 Agrobacterium vitis S4 7386400 YP_002549672.1 CDS Avi_2334 NC_011989.1 1912417 1913679 D phage tail sheath protein 1912417..1913679 Agrobacterium vitis S4 7386401 YP_002549673.1 CDS Avi_2335 NC_011989.1 1913706 1914239 D phage major tail tube protein 1913706..1914239 Agrobacterium vitis S4 7386402 YP_002549674.1 CDS Avi_2336 NC_011989.1 1914236 1914706 D hypothetical protein 1914236..1914706 Agrobacterium vitis S4 7386403 YP_002549675.1 CDS Avi_2337 NC_011989.1 1914789 1916588 D Phage tail tape measure protein 1914789..1916588 Agrobacterium vitis S4 7386404 YP_002549676.1 CDS Avi_2340 NC_011989.1 1917311 1917619 D hypothetical protein 1917311..1917619 Agrobacterium vitis S4 7386405 YP_002549677.1 CDS Avi_2342 NC_011989.1 1917885 1918676 D Prophage antirepressor protein 1917885..1918676 Agrobacterium vitis S4 7386406 YP_002549678.1 CDS Avi_2343 NC_011989.1 1918767 1919702 D hypothetical protein 1918767..1919702 Agrobacterium vitis S4 7386407 YP_002549679.1 CDS Avi_2344 NC_011989.1 1919785 1920204 D phage tail assembly protein 1919785..1920204 Agrobacterium vitis S4 7386408 YP_002549680.1 CDS Avi_2347 NC_011989.1 1920434 1921447 D hypothetical protein 1920434..1921447 Agrobacterium vitis S4 7386409 YP_002549681.1 CDS Avi_2350 NC_011989.1 1921744 1922322 D phage related lysozyme protein 1921744..1922322 Agrobacterium vitis S4 7386410 YP_002549682.1 CDS Avi_2351 NC_011989.1 1922665 1923069 D hypothetical protein 1922665..1923069 Agrobacterium vitis S4 7386411 YP_002549683.1 CDS Avi_2353 NC_011989.1 1923308 1923904 D hypothetical protein 1923308..1923904 Agrobacterium vitis S4 7386001 YP_002549684.1 CDS Avi_2354 NC_011989.1 1923960 1924298 D hypothetical protein 1923960..1924298 Agrobacterium vitis S4 7386002 YP_002549685.1 CDS Avi_2356 NC_011989.1 1924481 1926400 D variable tail fiber protein 1924481..1926400 Agrobacterium vitis S4 7386003 YP_002549686.1 CDS Avi_2357 NC_011989.1 1927306 1927704 R hypothetical protein complement(1927306..1927704) Agrobacterium vitis S4 7386004 YP_002549687.1 CDS Avi_2360 NC_011989.1 1928626 1929855 R hypothetical protein complement(1928626..1929855) Agrobacterium vitis S4 7386005 YP_002549688.1 CDS Avi_2361 NC_011989.1 1930618 1930857 R hypothetical protein complement(1930618..1930857) Agrobacterium vitis S4 7386006 YP_002549689.1 CDS Avi_2362 NC_011989.1 1931091 1931309 R hypothetical protein complement(1931091..1931309) Agrobacterium vitis S4 7386007 YP_002549690.1 CDS recG NC_011989.1 1931335 1933707 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(1931335..1933707) Agrobacterium vitis S4 7386008 YP_002549691.1 CDS Avi_2364 NC_011989.1 1933908 1934255 D hypothetical protein 1933908..1934255 Agrobacterium vitis S4 7386009 YP_002549692.1 CDS mfd NC_011989.1 1934252 1937779 D transcription-repair coupling factor 1934252..1937779 Agrobacterium vitis S4 7386010 YP_002549693.1 CDS Avi_2367 NC_011989.1 1937845 1938822 D hypothetical protein 1937845..1938822 Agrobacterium vitis S4 7386011 YP_002549694.1 CDS Avi_2368 NC_011989.1 1938867 1939802 R hypothetical protein complement(1938867..1939802) Agrobacterium vitis S4 7386012 YP_002549695.1 CDS Avi_2369 NC_011989.1 1939895 1940566 R polyketide biosynthesis associated protein complement(1939895..1940566) Agrobacterium vitis S4 7386013 YP_002549696.1 CDS Avi_2370 NC_011989.1 1940642 1942489 R ABC transporter substrate binding protein (peptide) complement(1940642..1942489) Agrobacterium vitis S4 7386014 YP_002549697.1 CDS Avi_2372 NC_011989.1 1942819 1943454 D hypothetical protein 1942819..1943454 Agrobacterium vitis S4 7386015 YP_002549698.1 CDS Avi_2374 NC_011989.1 1943536 1943913 R hypothetical protein complement(1943536..1943913) Agrobacterium vitis S4 7386016 YP_002549699.1 CDS glnA NC_011989.1 1944055 1945464 R glutamine synthetase complement(1944055..1945464) Agrobacterium vitis S4 7386017 YP_002549700.1 CDS glnB NC_011989.1 1945526 1945864 R nitrogen regulatory protein PII complement(1945526..1945864) Agrobacterium vitis S4 7386018 YP_002549701.1 CDS Avi_2378 NC_011989.1 1946201 1947682 D hypothetical protein 1946201..1947682 Agrobacterium vitis S4 7386019 YP_002549702.1 CDS Avi_2379 NC_011989.1 1947679 1948218 R acetyltransferase complement(1947679..1948218) Agrobacterium vitis S4 7386020 YP_002549703.1 CDS Avi_2380 NC_011989.1 1948226 1949029 R hypothetical protein complement(1948226..1949029) Agrobacterium vitis S4 7386021 YP_002549704.1 CDS uvrA NC_011989.1 1949051 1951972 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(1949051..1951972) Agrobacterium vitis S4 7386022 YP_002549705.1 CDS ssb NC_011989.1 1952252 1952782 D binds to single stranded DNA and may facilitate the binding and interaction of other proteins to DNA; single-stranded DNA-binding protein 1952252..1952782 Agrobacterium vitis S4 7386023 YP_002549706.1 CDS Avi_2385 NC_011989.1 1953155 1953784 R hypothetical protein complement(1953155..1953784) Agrobacterium vitis S4 7386024 YP_002549707.1 CDS gyrA NC_011989.1 1954063 1956855 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1954063..1956855 Agrobacterium vitis S4 7386025 YP_002549708.1 CDS Avi_2388 NC_011989.1 1956980 1959439 R heavy-metal transporting P-type ATPase complement(1956980..1959439) Agrobacterium vitis S4 7386026 YP_002549709.1 CDS ccoG NC_011989.1 1959625 1961211 D cytochrome c oxidase accessory protein CcoG 1959625..1961211 Agrobacterium vitis S4 7386027 YP_002549710.1 CDS fixH NC_011989.1 1961208 1961702 D nitrogen fixation protein FixH 1961208..1961702 Agrobacterium vitis S4 7386028 YP_002549711.1 CDS fixI NC_011989.1 1961699 1964062 D nitrogen fixation protein FixI 1961699..1964062 Agrobacterium vitis S4 7386029 YP_002549712.1 CDS ccoS NC_011989.1 1964059 1964208 D cytochrome oxidase maturation protein cbb3-type 1964059..1964208 Agrobacterium vitis S4 7386030 YP_002549713.1 CDS gnd NC_011989.1 1964340 1965776 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 1964340..1965776 Agrobacterium vitis S4 7386031 YP_002549714.1 CDS Avi_2397 NC_011989.1 1965851 1966702 D metallo-beta-lactamase 1965851..1966702 Agrobacterium vitis S4 7386032 YP_002549715.1 CDS Avi_2398 NC_011989.1 1966738 1967787 R transcriptional regulator LacI family complement(1966738..1967787) Agrobacterium vitis S4 7386033 YP_002549716.1 CDS Avi_2399 NC_011989.1 1968207 1969442 D ABC transporter substrate binding protein (sugar) 1968207..1969442 Agrobacterium vitis S4 7386034 YP_002549717.1 CDS Avi_2400 NC_011989.1 1969699 1970601 D sugar ABC transporter permease 1969699..1970601 Agrobacterium vitis S4 7386035 YP_002549718.1 CDS Avi_2402 NC_011989.1 1970579 1971532 D ABC transporter permease 1970579..1971532 Agrobacterium vitis S4 7386036 YP_002549719.1 CDS Avi_2404 NC_011989.1 1971536 1972627 D ABC transporter ATPase 1971536..1972627 Agrobacterium vitis S4 7386037 YP_002549720.1 CDS manA NC_011989.1 1972806 1975253 D beta-mannosidase precursor 1972806..1975253 Agrobacterium vitis S4 7386038 YP_002549721.1 CDS Avi_2406 NC_011989.1 1975317 1976078 D hypothetical protein 1975317..1976078 Agrobacterium vitis S4 7386039 YP_002549722.1 CDS Avi_2407 NC_011989.1 1976106 1977239 D hypothetical protein 1976106..1977239 Agrobacterium vitis S4 7386040 YP_002549723.1 CDS Avi_2408 NC_011989.1 1977564 1978595 D hypothetical protein 1977564..1978595 Agrobacterium vitis S4 7386041 YP_002549724.1 CDS Avi_2409 NC_011989.1 1978854 1980479 D hypothetical protein 1978854..1980479 Agrobacterium vitis S4 7386042 YP_002549725.1 CDS Avi_2410 NC_011989.1 1980464 1982338 R hypothetical protein complement(1980464..1982338) Agrobacterium vitis S4 7386043 YP_002549726.1 CDS Avi_2411 NC_011989.1 1982335 1984083 R hypothetical protein complement(1982335..1984083) Agrobacterium vitis S4 7386044 YP_002549727.1 CDS Avi_2412 NC_011989.1 1984301 1984954 R in Escherichia coli this inner membrane protein was found to anchor the periplasmic catalytic oxidoreductase YedY; sulfite oxidase activity not demonstrated; contains heme; putative sulfite oxidase subunit YedZ complement(1984301..1984954) Agrobacterium vitis S4 7386045 YP_002549728.1 CDS Avi_2413 NC_011989.1 1984951 1985898 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY complement(1984951..1985898) Agrobacterium vitis S4 7386046 YP_002549729.1 CDS ilvD NC_011989.1 1986157 1987992 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1986157..1987992 Agrobacterium vitis S4 7386047 YP_002549730.1 CDS Avi_2415 NC_011989.1 1988710 1989714 R hypothetical protein complement(1988710..1989714) Agrobacterium vitis S4 7386048 YP_002549731.1 CDS rhtB NC_011989.1 1989884 1990516 R RhtB family transporter complement(1989884..1990516) Agrobacterium vitis S4 7386049 YP_002549732.1 CDS purB NC_011989.1 1990743 1992044 R Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase complement(1990743..1992044) Agrobacterium vitis S4 7386050 YP_002549733.1 CDS Avi_2418 NC_011989.1 1992133 1992837 R hypothetical protein complement(1992133..1992837) Agrobacterium vitis S4 7386051 YP_002549734.1 CDS rpe NC_011989.1 1992861 1993538 R ribulose-phosphate 3-epimerase complement(1992861..1993538) Agrobacterium vitis S4 7386052 YP_002549735.1 CDS Avi_2420 NC_011989.1 1993732 1994493 D gluconate dehydrogenase 1993732..1994493 Agrobacterium vitis S4 7386053 YP_002549736.1 CDS Avi_2422 NC_011989.1 1994504 1995589 R amino acid ABC transporter substrate-binding protein complement(1994504..1995589) Agrobacterium vitis S4 7386054 YP_002549737.1 CDS Avi_2423 NC_011989.1 1995793 1996245 D flavoprotein oxidoreductase 1995793..1996245 Agrobacterium vitis S4 7386055 YP_002549738.1 CDS Avi_2425 NC_011989.1 1996267 1996611 D hypothetical protein 1996267..1996611 Agrobacterium vitis S4 7386056 YP_002549739.1 CDS Avi_2427 NC_011989.1 1997177 1998697 D polyphenol oxidase b precursor (catechol oxidase) oxidoreductase 1997177..1998697 Agrobacterium vitis S4 7386057 YP_002549740.1 CDS Avi_2428 NC_011989.1 1998703 1999548 D hypothetical protein 1998703..1999548 Agrobacterium vitis S4 7386058 YP_002549741.1 CDS Avi_2429 NC_011989.1 1999540 1999944 R mutT like protein complement(1999540..1999944) Agrobacterium vitis S4 7386059 YP_002549742.1 CDS rhlE NC_011989.1 1999946 2001496 R ATP-dependent RNA helicase complement(1999946..2001496) Agrobacterium vitis S4 7386060 YP_002549743.1 CDS rhtB NC_011989.1 2001662 2002285 R RhtB family transporter complement(2001662..2002285) Agrobacterium vitis S4 7386061 YP_002549744.1 CDS Avi_2433 NC_011989.1 2002418 2003095 R hypothetical protein complement(2002418..2003095) Agrobacterium vitis S4 7386062 YP_002549745.1 CDS nifS NC_011989.1 2003392 2004555 D cysteine desulfurase 2003392..2004555 Agrobacterium vitis S4 7386063 YP_002549746.1 CDS sufB NC_011989.1 2004700 2006169 D with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB 2004700..2006169 Agrobacterium vitis S4 7386064 YP_002549747.1 CDS sufC NC_011989.1 2006449 2007204 D ABC transporter ATPase 2006449..2007204 Agrobacterium vitis S4 7386065 YP_002549748.1 CDS sufD NC_011989.1 2007228 2008502 D transport system 2007228..2008502 Agrobacterium vitis S4 7386066 YP_002549749.1 CDS Avi_2439 NC_011989.1 2008495 2008887 D bleomycin resistance protein 2008495..2008887 Agrobacterium vitis S4 7386067 YP_002549750.1 CDS Avi_2440 NC_011989.1 2008877 2010127 D aminotransferase 2008877..2010127 Agrobacterium vitis S4 7386068 YP_002549751.1 CDS Avi_2441 NC_011989.1 2010154 2010534 D hypothetical protein 2010154..2010534 Agrobacterium vitis S4 7386069 YP_002549752.1 CDS sufA NC_011989.1 2010675 2011061 D FeS assembly scaffold SufA 2010675..2011061 Agrobacterium vitis S4 7386070 YP_002549753.1 CDS coaD NC_011989.1 2011967 2012461 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 2011967..2012461 Agrobacterium vitis S4 7386071 YP_002549754.1 CDS ppiB NC_011989.1 2012489 2013067 D peptidyl prolyl cis-trans isomerase 2012489..2013067 Agrobacterium vitis S4 7386072 YP_002549755.1 CDS ppiB NC_011989.1 2013204 2013677 D peptidyl prolyl cis-trans isomerase 2013204..2013677 Agrobacterium vitis S4 7386073 YP_002549756.1 CDS queA NC_011989.1 2013757 2014815 D S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2013757..2014815 Agrobacterium vitis S4 7386074 YP_002549757.1 CDS tgt NC_011989.1 2014818 2015948 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 2014818..2015948 Agrobacterium vitis S4 7386075 YP_002549758.1 CDS Avi_2452 NC_011989.1 2015962 2016249 R hypothetical protein complement(2015962..2016249) Agrobacterium vitis S4 7386076 YP_002549759.1 CDS Avi_2453 NC_011989.1 2016588 2017343 D hypothetical protein 2016588..2017343 Agrobacterium vitis S4 7386077 YP_002549760.1 CDS Avi_2454 NC_011989.1 2017444 2018031 D hypothetical protein 2017444..2018031 Agrobacterium vitis S4 7386078 YP_002549761.1 CDS Avi_2455 NC_011989.1 2018179 2019111 R hypothetical protein complement(2018179..2019111) Agrobacterium vitis S4 7386079 YP_002549762.1 CDS Avi_2456 NC_011989.1 2019186 2021477 R dehydrogenase complement(2019186..2021477) Agrobacterium vitis S4 7386080 YP_002549763.1 CDS Avi_2457 NC_011989.1 2021474 2022457 R oxidoreductase complement(2021474..2022457) Agrobacterium vitis S4 7386081 YP_002549764.1 CDS Avi_2459 NC_011989.1 2022457 2022930 R oxidoreductase with iron-sulfur subunit complement(2022457..2022930) Agrobacterium vitis S4 7386082 YP_002549765.1 CDS Avi_2460 NC_011989.1 2023173 2023868 D TetR family transcriptional regulator 2023173..2023868 Agrobacterium vitis S4 7386994 YP_002549766.1 CDS Avi_2461 NC_011989.1 2023875 2024747 R hypothetical protein complement(2023875..2024747) Agrobacterium vitis S4 7385835 YP_002549767.1 CDS cckA NC_011989.1 2025032 2027650 R two component sensor kinase complement(2025032..2027650) Agrobacterium vitis S4 7385836 YP_002549768.1 CDS Avi_2465 NC_011989.1 2028093 2029565 D hypothetical protein 2028093..2029565 Agrobacterium vitis S4 7385837 YP_002549769.1 CDS dksA NC_011989.1 2029988 2030428 R RNA polymerase-binding protein DksA complement(2029988..2030428) Agrobacterium vitis S4 7385838 YP_002549770.1 CDS Avi_2469 NC_011989.1 2030704 2031204 D hypothetical protein 2030704..2031204 Agrobacterium vitis S4 7385839 YP_002549771.1 CDS Avi_2470 NC_011989.1 2031344 2032813 D hypothetical protein 2031344..2032813 Agrobacterium vitis S4 7385840 YP_002549772.1 CDS Avi_2471 NC_011989.1 2032810 2033907 D hypothetical protein 2032810..2033907 Agrobacterium vitis S4 7385841 YP_002549773.1 CDS Avi_2472 NC_011989.1 2034060 2034608 D hypothetical protein 2034060..2034608 Agrobacterium vitis S4 7385842 YP_002549774.1 CDS speB NC_011989.1 2034782 2035837 R agmatinase complement(2034782..2035837) Agrobacterium vitis S4 7385843 YP_002549775.1 CDS aspB NC_011989.1 2035863 2037044 R hypothetical protein complement(2035863..2037044) Agrobacterium vitis S4 7385844 YP_002549776.1 CDS sthA NC_011989.1 2037474 2038898 D catalyzes the conversion of NADPH to NADH; soluble pyridine nucleotide transhydrogenase 2037474..2038898 Agrobacterium vitis S4 7385845 YP_002549777.1 CDS Avi_2477 NC_011989.1 2038956 2039708 R exported protein complement(2038956..2039708) Agrobacterium vitis S4 7385846 YP_002549778.1 CDS tig NC_011989.1 2039887 2041368 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(2039887..2041368) Agrobacterium vitis S4 7385847 YP_002549779.1 CDS Avi_2479 NC_011989.1 2041970 2042551 R hypothetical protein complement(2041970..2042551) Agrobacterium vitis S4 7387175 YP_002549780.1 CDS Avi_2480 NC_011989.1 2042548 2043660 R membrane protein complement(2042548..2043660) Agrobacterium vitis S4 7385849 YP_002549781.1 CDS Avi_2481 NC_011989.1 2044292 2044441 D hypothetical protein 2044292..2044441 Agrobacterium vitis S4 7385850 YP_002549782.1 CDS Avi_2483 NC_011989.1 2044645 2045184 R hypothetical protein complement(2044645..2045184) Agrobacterium vitis S4 7385851 YP_002549783.1 CDS Avi_2484 NC_011989.1 2045186 2046493 R recombination factor protein RarA complement(2045186..2046493) Agrobacterium vitis S4 7385852 YP_002549784.1 CDS htrA NC_011989.1 2046490 2047893 R serine protease complement(2046490..2047893) Agrobacterium vitis S4 7385853 YP_002549785.1 CDS Avi_2487 NC_011989.1 2048213 2048512 D hypothetical protein 2048213..2048512 Agrobacterium vitis S4 7385854 YP_002549786.1 CDS Avi_2489 NC_011989.1 2048602 2049111 D hypothetical protein 2048602..2049111 Agrobacterium vitis S4 7385855 YP_002549787.1 CDS Avi_2490 NC_011989.1 2049163 2050764 D hypothetical protein 2049163..2050764 Agrobacterium vitis S4 7385856 YP_002549788.1 CDS Avi_2491 NC_011989.1 2050914 2051249 D hypothetical protein 2050914..2051249 Agrobacterium vitis S4 7385857 YP_002549789.1 CDS cpdB NC_011989.1 2051413 2053416 D periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 2051413..2053416 Agrobacterium vitis S4 7385858 YP_002549790.1 CDS Avi_2493 NC_011989.1 2053493 2053819 R hypothetical protein complement(2053493..2053819) Agrobacterium vitis S4 7385859 YP_002549791.1 CDS Avi_2495 NC_011989.1 2053959 2054996 R glycosyl transferase family 2 complement(2053959..2054996) Agrobacterium vitis S4 7385860 YP_002549792.1 CDS ilvA NC_011989.1 2055687 2056937 D catalyzes the formation of 2-oxobutanoate from L-threonine; biosynthetic; threonine dehydratase 2055687..2056937 Agrobacterium vitis S4 7385861 YP_002549793.1 CDS Avi_2497 NC_011989.1 2057302 2058375 D taurine transport system protein 2057302..2058375 Agrobacterium vitis S4 7385862 YP_002549794.1 CDS Avi_2498 NC_011989.1 2058449 2059267 D aliphatic sulfonate ABC transporter permease 2058449..2059267 Agrobacterium vitis S4 7385863 YP_002549795.1 CDS Avi_2499 NC_011989.1 2059240 2060079 D ABC transporter ATPase 2059240..2060079 Agrobacterium vitis S4 7385864 YP_002549796.1 CDS Avi_2500 NC_011989.1 2060090 2060917 D hypothetical protein 2060090..2060917 Agrobacterium vitis S4 7385865 YP_002549797.1 CDS Avi_2501 NC_011989.1 2060929 2061579 D hypothetical protein 2060929..2061579 Agrobacterium vitis S4 7385866 YP_002549798.1 CDS pccA NC_011989.1 2061583 2065314 D propionyl-coenzyme A carboxylase alpha polypeptide 2061583..2065314 Agrobacterium vitis S4 7385867 YP_002549799.1 CDS Avi_2503 NC_011989.1 2065518 2066159 D hypothetical protein 2065518..2066159 Agrobacterium vitis S4 7385868 YP_002549800.1 CDS Avi_2504 NC_011989.1 2066253 2067191 D permease 2066253..2067191 Agrobacterium vitis S4 7385869 YP_002549801.1 CDS Avi_2505 NC_011989.1 2067393 2067926 D hypothetical protein 2067393..2067926 Agrobacterium vitis S4 7385870 YP_002549802.1 CDS adhC NC_011989.1 2068014 2069141 D alcohol dehydrogenase class III 2068014..2069141 Agrobacterium vitis S4 7385871 YP_002549803.1 CDS Avi_2507 NC_011989.1 2069138 2069614 D acetyltransferase 2069138..2069614 Agrobacterium vitis S4 7385872 YP_002549804.1 CDS Avi_2508 NC_011989.1 2069620 2070084 D hypothetical protein 2069620..2070084 Agrobacterium vitis S4 7385873 YP_002549805.1 CDS Avi_2509 NC_011989.1 2070081 2070752 D hypothetical protein 2070081..2070752 Agrobacterium vitis S4 7385874 YP_002549806.1 CDS fghA NC_011989.1 2070781 2071602 D S-formylglutathione hydrolase 2070781..2071602 Agrobacterium vitis S4 7385875 YP_002549807.1 CDS lpxB NC_011989.1 2071675 2072850 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(2071675..2072850) Agrobacterium vitis S4 7385876 YP_002549808.1 CDS Avi_2512 NC_011989.1 2072894 2073766 R hypothetical protein complement(2072894..2073766) Agrobacterium vitis S4 7385877 YP_002549809.1 CDS lpxA NC_011989.1 2073770 2074585 R catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase complement(2073770..2074585) Agrobacterium vitis S4 7385878 YP_002549810.1 CDS fabZ NC_011989.1 2074582 2075046 R in Pseudomonas aeruginosa this enzyme is a trimer of dimers; essential for membrane formation; performs third step of type II fatty acid biosynthesis; catalyzes dehydration of (3R)-hydroxyacyl-ACP to trans-2-acyl-ACP; (3R)-hydroxymyristoyl-ACP dehydratase complement(2074582..2075046) Agrobacterium vitis S4 7385879 YP_002549811.1 CDS lpxD NC_011989.1 2075043 2076110 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(2075043..2076110) Agrobacterium vitis S4 7385880 YP_002549812.1 CDS omp1 NC_011989.1 2076159 2078495 R group 1 outer membrane protein precursor complement(2076159..2078495) Agrobacterium vitis S4 7385881 YP_002549813.1 CDS Avi_2518 NC_011989.1 2078690 2079811 R zinc metallopeptidase complement(2078690..2079811) Agrobacterium vitis S4 7385882 YP_002549814.1 CDS cdsA NC_011989.1 2079923 2080765 R phosphatidate cytidylyltransferase complement(2079923..2080765) Agrobacterium vitis S4 7385883 YP_002549815.1 CDS uppS NC_011989.1 2080772 2081518 R UDP pyrophosphate synthase complement(2080772..2081518) Agrobacterium vitis S4 7385884 YP_002549816.1 CDS frr NC_011989.1 2081563 2082123 R Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor complement(2081563..2082123) Agrobacterium vitis S4 7385885 YP_002549817.1 CDS pyrH NC_011989.1 2082211 2082933 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(2082211..2082933) Agrobacterium vitis S4 7385886 YP_002549818.1 CDS tsf NC_011989.1 2083151 2084077 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(2083151..2084077) Agrobacterium vitis S4 7385887 YP_002549819.1 CDS rpsB NC_011989.1 2084370 2085116 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(2084370..2085116) Agrobacterium vitis S4 7385888 YP_002549820.1 CDS Avi_2529 NC_011989.1 2085427 2086245 R hypothetical protein complement(2085427..2086245) Agrobacterium vitis S4 7385889 YP_002549821.1 CDS Avi_2531 NC_011989.1 2086370 2086840 D hypothetical protein 2086370..2086840 Agrobacterium vitis S4 7385890 YP_002549822.1 CDS Avi_2532 NC_011989.1 2086837 2087562 D glycerophosphoryl diester phosphodiesterase 2086837..2087562 Agrobacterium vitis S4 7385891 YP_002549823.1 CDS Avi_2533 NC_011989.1 2087580 2088788 D hypothetical protein 2087580..2088788 Agrobacterium vitis S4 7385892 YP_002549824.1 CDS Avi_2534 NC_011989.1 2088844 2089269 D HIT family protein 2088844..2089269 Agrobacterium vitis S4 7385893 YP_002549825.1 CDS Avi_2535 NC_011989.1 2089366 2089698 R hypothetical protein complement(2089366..2089698) Agrobacterium vitis S4 7385894 YP_002549826.1 CDS Avi_2536 NC_011989.1 2089695 2090417 R branched-chain amino acid permease complement(2089695..2090417) Agrobacterium vitis S4 7385895 YP_002549827.1 CDS clpA NC_011989.1 2090601 2093093 R ATP-dependent Clp protease ATP-binding subunit complement(2090601..2093093) Agrobacterium vitis S4 7385896 YP_002549828.1 CDS clpS NC_011989.1 2093098 2093451 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS complement(2093098..2093451) Agrobacterium vitis S4 7385897 YP_002549829.1 CDS Avi_2539 NC_011989.1 2093857 2094210 R hypothetical protein complement(2093857..2094210) Agrobacterium vitis S4 7385898 YP_002549830.1 CDS Avi_2541 NC_011989.1 2094401 2094736 R hypothetical protein complement(2094401..2094736) Agrobacterium vitis S4 7385899 YP_002549831.1 CDS cysE NC_011989.1 2094952 2095776 R serine acetyltransferase complement(2094952..2095776) Agrobacterium vitis S4 7385900 YP_002549832.1 CDS fad NC_011989.1 2095849 2096652 D enoyl-CoA hydratase 2095849..2096652 Agrobacterium vitis S4 7385901 YP_002549833.1 CDS Avi_2545 NC_011989.1 2096659 2097444 R hydrolase complement(2096659..2097444) Agrobacterium vitis S4 7385902 YP_002549834.1 CDS Avi_2547 NC_011989.1 2097847 2098092 D hypothetical protein 2097847..2098092 Agrobacterium vitis S4 7385903 YP_002549835.1 CDS nah NC_011989.1 2098644 2099309 D salicylate hydroxylase 2098644..2099309 Agrobacterium vitis S4 7385904 YP_002549836.1 CDS metC NC_011989.1 2099360 2100550 R catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase complement(2099360..2100550) Agrobacterium vitis S4 7385905 YP_002549837.1 CDS Avi_2551 NC_011989.1 2100990 2102015 D amino acid ABC transporter substrate-binding protein 2100990..2102015 Agrobacterium vitis S4 7385906 YP_002549838.1 CDS Avi_2552 NC_011989.1 2102148 2103344 D amino acid ABC transporter permease 2102148..2103344 Agrobacterium vitis S4 7385907 YP_002549839.1 CDS Avi_2553 NC_011989.1 2103316 2104503 D amino acid ABC transporter permease 2103316..2104503 Agrobacterium vitis S4 7385908 YP_002549840.1 CDS Avi_2554 NC_011989.1 2104615 2105385 D ABC transporter nucleotide binding/ATPase (amino acid) 2104615..2105385 Agrobacterium vitis S4 7385909 YP_002549841.1 CDS alaS NC_011989.1 2107107 2109770 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(2107107..2109770) Agrobacterium vitis S4 7385911 YP_002549842.1 CDS recA NC_011989.1 2109940 2111028 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(2109940..2111028) Agrobacterium vitis S4 7385912 YP_002549843.1 CDS Avi_2559 NC_011989.1 2111275 2112240 D carbohydrate kinase 2111275..2112240 Agrobacterium vitis S4 7385913 YP_002549844.1 CDS Avi_2560 NC_011989.1 2112237 2113160 D hypothetical protein 2112237..2113160 Agrobacterium vitis S4 7385914 YP_002549845.1 CDS lexA NC_011989.1 2113551 2114270 D Represses a number of genes involved in the response to DNA damage; LexA repressor 2113551..2114270 Agrobacterium vitis S4 7385915 YP_002549846.1 CDS Avi_2562 NC_011989.1 2114251 2117274 R hypothetical protein complement(2114251..2117274) Agrobacterium vitis S4 7385916 YP_002549847.1 CDS gltA NC_011989.1 2117619 2118908 D type II enzyme; in Escherichia coli this enzyme forms a trimer of dimers which is allosterically inhibited by NADH and competitively inhibited by alpha-ketoglutarate; allosteric inhibition is lost when Cys206 is chemically modified which also affects hexamer formation; forms oxaloacetate and acetyl-CoA and water from citrate and coenzyme A; functions in TCA cycle, glyoxylate cycle and respiration; enzyme from Helicobacter pylori is not inhibited by NADH; type II citrate synthase 2117619..2118908 Agrobacterium vitis S4 7386580 YP_002549848.1 CDS ppiD NC_011989.1 2119106 2120995 D peptidyl-prolyl cis-trans isomerase 2119106..2120995 Agrobacterium vitis S4 7386581 YP_002549849.1 CDS trpD NC_011989.1 2121017 2122039 D Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase 2121017..2122039 Agrobacterium vitis S4 7386582 YP_002549850.1 CDS trpC NC_011989.1 2122036 2122851 D involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase 2122036..2122851 Agrobacterium vitis S4 7386583 YP_002549851.1 CDS moaC NC_011989.1 2122848 2123333 D molybdenum cofactor biosynthesis protein C 2122848..2123333 Agrobacterium vitis S4 7386584 YP_002549852.1 CDS moeA NC_011989.1 2123333 2124550 D molybdopterin biosynthesis protein 2123333..2124550 Agrobacterium vitis S4 7386585 YP_002549853.1 CDS Avi_2570 NC_011989.1 2124646 2125329 D hypothetical protein 2124646..2125329 Agrobacterium vitis S4 7386586 YP_002549854.1 CDS cbiP NC_011989.1 2125330 2126784 R catalyzes amidations at positions B, D, E, and G on adenosylcobyrinic A,C-diamide. NH(2) groups are provided by glutamine, and one molecule of ATP is hydrogenolyzed for each amidation; cobyric acid synthase complement(2125330..2126784) Agrobacterium vitis S4 7386587 YP_002549855.1 CDS Avi_2573 NC_011989.1 2127353 2128351 D ABC transporter substrate-binding protein 2127353..2128351 Agrobacterium vitis S4 7386588 YP_002549856.1 CDS Avi_2574 NC_011989.1 2128554 2129468 D ABC transporter permease 2128554..2129468 Agrobacterium vitis S4 7386589 YP_002549857.1 CDS Avi_2575 NC_011989.1 2129461 2130513 D ABC transporter ATPase 2129461..2130513 Agrobacterium vitis S4 7386590 YP_002549858.1 CDS Avi_2576 NC_011989.1 2130609 2131661 R glycosyltransferase complement(2130609..2131661) Agrobacterium vitis S4 7386591 YP_002549859.1 CDS Avi_2578 NC_011989.1 2132039 2132386 D hypothetical protein 2132039..2132386 Agrobacterium vitis S4 7386592 YP_002549860.1 CDS Avi_2579 NC_011989.1 2132383 2134149 D hypothetical protein 2132383..2134149 Agrobacterium vitis S4 7386593 YP_002549861.1 CDS Avi_2581 NC_011989.1 2134172 2134996 R hypothetical protein complement(2134172..2134996) Agrobacterium vitis S4 7386594 YP_002549862.1 CDS Avi_2583 NC_011989.1 2135329 2135487 R Entericidin B signal peptide protein complement(2135329..2135487) Agrobacterium vitis S4 7386595 YP_002549863.1 CDS Avi_2584 NC_011989.1 2135740 2136483 D hypothetical protein 2135740..2136483 Agrobacterium vitis S4 7386596 YP_002549864.1 CDS cyc NC_011989.1 2136500 2137879 R cytochrome P450 complement(2136500..2137879) Agrobacterium vitis S4 7386597 YP_002549865.1 CDS Avi_2586 NC_011989.1 2137979 2138953 R LysR family transcriptional regulator complement(2137979..2138953) Agrobacterium vitis S4 7386598 YP_002549866.1 CDS Avi_2589 NC_011989.1 2139284 2139568 D hypothetical protein 2139284..2139568 Agrobacterium vitis S4 7386599 YP_002549867.1 CDS Avi_2590 NC_011989.1 2139821 2140834 D AraC family transcriptional regulator 2139821..2140834 Agrobacterium vitis S4 7386600 YP_002549868.1 CDS Avi_2591 NC_011989.1 2141142 2142338 D hypothetical protein 2141142..2142338 Agrobacterium vitis S4 7386601 YP_002549869.1 CDS Avi_2593 NC_011989.1 2142390 2143022 D hypothetical protein 2142390..2143022 Agrobacterium vitis S4 7386602 YP_002549870.1 CDS Avi_2594 NC_011989.1 2143053 2143682 D hydrolase 2143053..2143682 Agrobacterium vitis S4 7386603 YP_002549871.1 CDS exoN NC_011989.1 2143679 2145163 D UTP-glucose-1-phosphate uridylyltransferase 2143679..2145163 Agrobacterium vitis S4 7386604 YP_002549872.1 CDS Avi_2596 NC_011989.1 2145169 2145864 D dolichyl-phosphate mannose synthase 2145169..2145864 Agrobacterium vitis S4 7386605 YP_002549873.1 CDS sipf NC_011989.1 2146046 2146999 R prokaryotic type I signal peptidase complement(2146046..2146999) Agrobacterium vitis S4 7386606 YP_002549874.1 CDS nrdE NC_011989.1 2147130 2150900 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(2147130..2150900) Agrobacterium vitis S4 7386607 YP_002549875.1 CDS mcpA NC_011989.1 2151704 2153605 D methyl-accepting chemotaxis protein 2151704..2153605 Agrobacterium vitis S4 7386608 YP_002549876.1 CDS Avi_2601 NC_011989.1 2153723 2154301 R hypothetical protein complement(2153723..2154301) Agrobacterium vitis S4 7386609 YP_002549877.1 CDS gpt NC_011989.1 2154401 2154898 R catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase complement(2154401..2154898) Agrobacterium vitis S4 7386610 YP_002549878.1 CDS Avi_2605 NC_011989.1 2155221 2156060 R hypothetical protein complement(2155221..2156060) Agrobacterium vitis S4 7386611 YP_002549879.1 CDS cinA NC_011989.1 2156308 2157090 R competence-damage associated protein complement(2156308..2157090) Agrobacterium vitis S4 7386612 YP_002549880.1 CDS mcpA NC_011989.1 2157466 2159433 R methyl-accepting chemotaxis protein complement(2157466..2159433) Agrobacterium vitis S4 7386613 YP_002549881.1 CDS cheW NC_011989.1 2160480 2160953 R chemotaxis protein complement(2160480..2160953) Agrobacterium vitis S4 7387161 YP_002549882.1 CDS Avi_2611 NC_011989.1 2161470 2161907 R hypothetical protein complement(2161470..2161907) Agrobacterium vitis S4 7386615 YP_002549883.1 CDS sdaA NC_011989.1 2161953 2163356 R L-serine dehydratase complement(2161953..2163356) Agrobacterium vitis S4 7386616 YP_002549884.1 CDS Avi_2613 NC_011989.1 2163844 2164617 D hypothetical protein 2163844..2164617 Agrobacterium vitis S4 7386617 YP_002549885.1 CDS Avi_2615 NC_011989.1 2164746 2165714 D hypothetical protein 2164746..2165714 Agrobacterium vitis S4 7386618 YP_002549886.1 CDS Avi_2616 NC_011989.1 2165726 2166202 D Transmembrane protein 2165726..2166202 Agrobacterium vitis S4 7386619 YP_002549887.1 CDS Avi_2617 NC_011989.1 2166250 2166642 R transcriptional regulator MerR family complement(2166250..2166642) Agrobacterium vitis S4 7386620 YP_002549888.1 CDS mgtE NC_011989.1 2166802 2168217 R magnesium transport protein complement(2166802..2168217) Agrobacterium vitis S4 7386621 YP_002549889.1 CDS cobD NC_011989.1 2168339 2169310 R CobD; CbiD in Salmonella; converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group; cobalamin biosynthesis protein complement(2168339..2169310) Agrobacterium vitis S4 7386622 YP_002549890.1 CDS cobC NC_011989.1 2169307 2170320 R cobalamin biosynthetic protein complement(2169307..2170320) Agrobacterium vitis S4 7386623 YP_002549891.1 CDS cobB NC_011989.1 2170317 2171627 R responsible for the amidation of carboxylic groups at position A and C of cobyrinic acid or hydrogenobrynic acid; cobyrinic acid a,c-diamide synthase complement(2170317..2171627) Agrobacterium vitis S4 7386624 YP_002549892.1 CDS cobA NC_011989.1 2171624 2172466 R uroporphyrin-III C-methyltransferase complement(2171624..2172466) Agrobacterium vitis S4 7386625 YP_002549893.1 CDS cbiD NC_011989.1 2172675 2173736 D Catalyzes the methylation of C-1 in cobalt-precorrin-5 and the subsequent extrusion of acetic acid from the resulting intermediate to form cobalt-precorrin-6A; cobalt-precorrin-6A synthase 2172675..2173736 Agrobacterium vitis S4 7386626 YP_002549894.1 CDS cobK NC_011989.1 2173720 2174409 D CobK/CbiJ; there are 2 pathways for cobalamin (vitamin B12) production, one aerobic (ex. P. denitrificans), the other anaerobic (ex. S. typhimurium); the CobK/CbiJ perform similar reactions in both; the anaerobic pathway includes the use of a chelated cobalt ion in order for ring contraction to occur; CobK thus converts precorrin 6 into dihydro-precorrin 6 while CbiJ converts cobalt-precorrin 6 into cobalt-deihydro-precorrin 6; cobalt-precorrin-6x reductase 2173720..2174409 Agrobacterium vitis S4 7386627 YP_002549895.1 CDS cheD NC_011989.1 2174470 2175027 R chemotaxis protein complement(2174470..2175027) Agrobacterium vitis S4 7386628 YP_002549896.1 CDS Avi_2631 NC_011989.1 2175523 2175945 R acetyltransferase complement(2175523..2175945) Agrobacterium vitis S4 7386629 YP_002549897.1 CDS iunH NC_011989.1 2176041 2177000 R inosine-uridine preferring nucleoside hydrolase complement(2176041..2177000) Agrobacterium vitis S4 7386630 YP_002549898.1 CDS cobM NC_011989.1 2177089 2177880 R precorrin-4 C11-methyltransferase complement(2177089..2177880) Agrobacterium vitis S4 7386631 YP_002549899.1 CDS cobJ NC_011989.1 2177882 2179720 R precorrin-3B C17-methyltransferase complement(2177882..2179720) Agrobacterium vitis S4 7386632 YP_002549900.1 CDS cobI NC_011989.1 2179720 2180454 R precorrin-2 C20-methyltransferase complement(2179720..2180454) Agrobacterium vitis S4 7386633 YP_002549901.1 CDS cobL NC_011989.1 2180451 2181677 R precorrin-6y methyltransferase complement(2180451..2181677) Agrobacterium vitis S4 7386634 YP_002549902.1 CDS cobH NC_011989.1 2181670 2183169 R precorrin isomerase complement(2181670..2183169) Agrobacterium vitis S4 7386635 YP_002549903.1 CDS Avi_2641 NC_011989.1 2183322 2184653 R hypothetical protein complement(2183322..2184653) Agrobacterium vitis S4 7386636 YP_002549904.1 CDS Avi_2642 NC_011989.1 2184990 2185775 D hypothetical protein 2184990..2185775 Agrobacterium vitis S4 7386637 YP_002549905.1 CDS Avi_2643 NC_011989.1 2185840 2186088 D hypothetical protein 2185840..2186088 Agrobacterium vitis S4 7386638 YP_002549906.1 CDS Avi_2644 NC_011989.1 2186085 2186387 D plasmid stabilization protein 2186085..2186387 Agrobacterium vitis S4 7386639 YP_002549907.1 CDS cobO NC_011989.1 2186422 2187066 R cob(I)alamin adenosyltransferase complement(2186422..2187066) Agrobacterium vitis S4 7386640 YP_002549908.1 CDS cobN NC_011989.1 2187063 2190845 R cobaltochelatase CobN subunit complement(2187063..2190845) Agrobacterium vitis S4 7386641 YP_002549909.1 CDS cobW NC_011989.1 2190849 2191922 R cobalamin biosynthesis protein CobW complement(2190849..2191922) Agrobacterium vitis S4 7386642 YP_002549910.1 CDS cobU NC_011989.1 2191926 2192453 R catalyzes ATP-dependent phosphorylation of adenosylcobinamide to form adenosylcobinamide phosphate and the addition of guanosine monophosphate to adenosylcobinamide phosphate to form adenosylcobinamide-GDP; adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase complement(2191926..2192453) Agrobacterium vitis S4 7386643 YP_002549911.1 CDS Avi_2651 NC_011989.1 2192458 2192760 R hypothetical protein complement(2192458..2192760) Agrobacterium vitis S4 7386644 YP_002549912.1 CDS Avi_2652 NC_011989.1 2193330 2193794 R hypothetical protein complement(2193330..2193794) Agrobacterium vitis S4 7386645 YP_002549913.1 CDS Avi_2653 NC_011989.1 2194245 2194388 D hypothetical protein 2194245..2194388 Agrobacterium vitis S4 7386646 YP_002549914.1 CDS gidA NC_011989.1 2194542 2195999 D TrmFO; Gid; glucose-inhibited division protein; similar to GidA; the gene from Bacillus subtilis encodes a tRNA-methyltransferase that utilizes folate as the carbon donor and bound flavin as reductant; modifies tRNA at position 54 (uridine) of the T-psi loop to form a C5-methyluridine; tRNA (uracil-5-)-methyltransferase Gid 2194542..2195999 Agrobacterium vitis S4 7386647 YP_002549915.1 CDS Avi_2655 NC_011989.1 2196071 2196715 R hypothetical protein complement(2196071..2196715) Agrobacterium vitis S4 7386648 YP_002549916.1 CDS crtB NC_011989.1 2196779 2197591 R phytoene synthase complement(2196779..2197591) Agrobacterium vitis S4 7386649 YP_002549917.1 CDS Avi_2657 NC_011989.1 2197647 2198033 R hypothetical protein complement(2197647..2198033) Agrobacterium vitis S4 7386650 YP_002549918.1 CDS secD NC_011989.1 2198037 2200607 R part of the preprotein secretory system; forms a complex with protein YajC; SecDFyajC stimulates the proton motive force-driven protein translocation, seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; bifunctional preprotein translocase subunit SecD/SecF complement(2198037..2200607) Agrobacterium vitis S4 7386651 YP_002549919.1 CDS yajC NC_011989.1 2200817 2201188 R preprotein tranlocase complement(2200817..2201188) Agrobacterium vitis S4 7386652 YP_002549920.1 CDS Avi_2661 NC_011989.1 2201398 2202264 D hypothetical protein 2201398..2202264 Agrobacterium vitis S4 7386653 YP_002549921.1 CDS Avi_2662 NC_011989.1 2202380 2203996 R lipoprotein complement(2202380..2203996) Agrobacterium vitis S4 7386654 YP_002549922.1 CDS pcm NC_011989.1 2204248 2204901 R catalyzes the methyl esterification of L-isoaspartyl residues that are formed in damaged proteins; protein-L-isoaspartate O-methyltransferase complement(2204248..2204901) Agrobacterium vitis S4 7386655 YP_002549923.1 CDS surE NC_011989.1 2204898 2205668 R catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE complement(2204898..2205668) Agrobacterium vitis S4 7386656 YP_002549924.1 CDS serS NC_011989.1 2205803 2207086 R catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase complement(2205803..2207086) Agrobacterium vitis S4 7386657 YP_002549925.1 CDS tatC NC_011989.1 2207128 2207940 R SEC-independent protein translocase complement(2207128..2207940) Agrobacterium vitis S4 7386658 YP_002549926.1 CDS tatB NC_011989.1 2207937 2208887 R SEC-independent protein translocase complement(2207937..2208887) Agrobacterium vitis S4 7386659 YP_002549927.1 CDS tatA NC_011989.1 2208982 2209197 R SEC-independent protein translocase complement(2208982..2209197) Agrobacterium vitis S4 7386660 YP_002549928.1 CDS Avi_2670 NC_011989.1 2209392 2210108 R hypothetical protein complement(2209392..2210108) Agrobacterium vitis S4 7386661 YP_002549929.1 CDS Avi_2671 NC_011989.1 2210114 2210935 R hypothetical protein complement(2210114..2210935) Agrobacterium vitis S4 7388341 YP_002549930.1 CDS Avi_2673 NC_011989.1 2210995 2212011 R glycosyl hydrolase complement(2210995..2212011) Agrobacterium vitis S4 7388342 YP_002549931.1 CDS Avi_2674 NC_011989.1 2212176 2214911 R hypothetical protein complement(2212176..2214911) Agrobacterium vitis S4 7388343 YP_002549932.1 CDS argS NC_011989.1 2214938 2216695 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(2214938..2216695) Agrobacterium vitis S4 7388344 YP_002549933.1 CDS dgt NC_011989.1 2216758 2217975 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(2216758..2217975) Agrobacterium vitis S4 7388345 YP_002549934.1 CDS Avi_2678 NC_011989.1 2218170 2218502 D hypothetical protein 2218170..2218502 Agrobacterium vitis S4 7388346 YP_002549935.1 CDS Avi_2680 NC_011989.1 2218589 2219383 D exonuclease III 2218589..2219383 Agrobacterium vitis S4 7388347 YP_002549936.1 CDS exoR NC_011989.1 2219407 2220222 R exopolysaccharide production negative regulator complement(2219407..2220222) Agrobacterium vitis S4 7388348 YP_002549937.1 CDS fadL NC_011989.1 2220929 2221966 R long-chain fatty acid transport protein complement(2220929..2221966) Agrobacterium vitis S4 7388349 YP_002549938.1 CDS valS NC_011989.1 2222633 2225476 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(2222633..2225476) Agrobacterium vitis S4 7388350 YP_002549939.1 CDS Avi_2684 NC_011989.1 2225690 2226613 R hypothetical protein complement(2225690..2226613) Agrobacterium vitis S4 7388351 YP_002549940.1 CDS Avi_2686 NC_011989.1 2226919 2228337 R Outer membrane secretion protein complement(2226919..2228337) Agrobacterium vitis S4 7388352 YP_002549941.1 CDS pcm NC_011989.1 2228948 2229571 R protein-L-isoaspartate O-methyltransferase complement(2228948..2229571) Agrobacterium vitis S4 7388353 YP_002549942.1 CDS Avi_2689 NC_011989.1 2230167 2230682 D hypothetical protein 2230167..2230682 Agrobacterium vitis S4 7388354 YP_002549943.1 CDS Avi_2691 NC_011989.1 2231338 2231841 D hypothetical protein 2231338..2231841 Agrobacterium vitis S4 7388355 YP_002549944.1 CDS accG NC_011989.1 2232179 2232997 R arabinose phosphate phosphatase complement(2232179..2232997) Agrobacterium vitis S4 7388356 YP_002549945.1 CDS accF NC_011989.1 2232990 2233790 R agrocinopine phosphodiesterase complement(2232990..2233790) Agrobacterium vitis S4 7388357 YP_002549946.1 CDS accE NC_011989.1 2233807 2234673 R agrocinopine ABC transporter permease complement(2233807..2234673) Agrobacterium vitis S4 7388358 YP_002549947.1 CDS accD NC_011989.1 2234675 2235592 R agrocinopine ABC transporter permease complement(2234675..2235592) Agrobacterium vitis S4 7388359 YP_002549948.1 CDS accC NC_011989.1 2235589 2236638 R ABC transporter nucleotide binding/ATPase (agrocinopine) complement(2235589..2236638) Agrobacterium vitis S4 7388360 YP_002549949.1 CDS accB NC_011989.1 2236635 2237570 R ABC transporter nucleotide binding/ATPase (agrocinopine) complement(2236635..2237570) Agrobacterium vitis S4 7388361 YP_002549950.1 CDS accA NC_011989.1 2237638 2239203 R ABC transporter substrate binding protein (agrocinopine) complement(2237638..2239203) Agrobacterium vitis S4 7388362 YP_002549951.1 CDS accR NC_011989.1 2239252 2240064 R transcriptional regulator complement(2239252..2240064) Agrobacterium vitis S4 7388363 YP_002549952.1 CDS Avi_2704 NC_011989.1 2240777 2241691 R Transcriptional regulator complement(2240777..2241691) Agrobacterium vitis S4 7388364 YP_002549953.1 CDS Avi_2705 NC_011989.1 2241807 2242835 D ABC transporter substrate binding protein (spermidine/putrescine) 2241807..2242835 Agrobacterium vitis S4 7388365 YP_002549954.1 CDS Avi_2706 NC_011989.1 2242904 2243947 D ABC transporter ATPase 2242904..2243947 Agrobacterium vitis S4 7388366 YP_002549955.1 CDS attA2 NC_011989.1 2244031 2244810 D mannopine ABC transporter permease 2244031..2244810 Agrobacterium vitis S4 7388367 YP_002549956.1 CDS Avi_2708 NC_011989.1 2244820 2245614 D polyamine ABC transporter permease 2244820..2245614 Agrobacterium vitis S4 7388368 YP_002549957.1 CDS noxB NC_011989.1 2245618 2246712 D D-nopaline dehydrogenase 2245618..2246712 Agrobacterium vitis S4 7388369 YP_002549958.1 CDS Avi_2710 NC_011989.1 2246705 2246998 D hypothetical protein 2246705..2246998 Agrobacterium vitis S4 7388370 YP_002549959.1 CDS noxA NC_011989.1 2247001 2248395 D D-nopaline dehydrogenase 2247001..2248395 Agrobacterium vitis S4 7388371 YP_002549960.1 CDS Avi_2713 NC_011989.1 2249072 2250571 R hypothetical protein complement(2249072..2250571) Agrobacterium vitis S4 7388372 YP_002549961.1 CDS Avi_9914 NC_011989.1 2250589 2251116 D kinase 2250589..2251116 Agrobacterium vitis S4 7388373 YP_002549962.1 CDS Avi_2714 NC_011989.1 2251648 2252676 R hypothetical protein complement(2251648..2252676) Agrobacterium vitis S4 7387970 YP_002549963.1 CDS Avi_2715 NC_011989.1 2252792 2252926 D IS3 family transposase 2252792..2252926 Agrobacterium vitis S4 7388374 YP_002549964.1 CDS Avi_2717 NC_011989.1 2253106 2253273 D hypothetical protein 2253106..2253273 Agrobacterium vitis S4 7388375 YP_002549965.1 CDS Avi_2719 NC_011989.1 2253318 2253599 R hypothetical protein complement(2253318..2253599) Agrobacterium vitis S4 7388376 YP_002549966.1 CDS Avi_2721 NC_011989.1 2254484 2254744 D dehydrogenase 2254484..2254744 Agrobacterium vitis S4 7387174 YP_002549967.1 CDS Avi_2722 NC_011989.1 2254858 2255619 R ABC transporter permease complement(2254858..2255619) Agrobacterium vitis S4 7388378 YP_002549968.1 CDS Avi_2723 NC_011989.1 2255616 2256542 R ABC transporter ATPase complement(2255616..2256542) Agrobacterium vitis S4 7388379 YP_002549969.1 CDS Avi_2724 NC_011989.1 2256663 2256890 R GGDEF family protein complement(2256663..2256890) Agrobacterium vitis S4 7388380 YP_002549970.1 CDS rrpX NC_011989.1 2257092 2257925 R two component response regulator complement(2257092..2257925) Agrobacterium vitis S4 7388381 YP_002549971.1 CDS Avi_2727 NC_011989.1 2258182 2260821 R dimethylglycine dehydrogenase complement(2258182..2260821) Agrobacterium vitis S4 7388382 YP_002549972.1 CDS Avi_2728 NC_011989.1 2260931 2261779 R DNA-binding protein complement(2260931..2261779) Agrobacterium vitis S4 7388383 YP_002549973.1 CDS Avi_2729 NC_011989.1 2262038 2262832 D SAM-dependent methyltransferase 2262038..2262832 Agrobacterium vitis S4 7388384 YP_002549974.1 CDS kefA NC_011989.1 2262881 2265358 R potassium efflux system KEFA complement(2262881..2265358) Agrobacterium vitis S4 7388385 YP_002549975.1 CDS Avi_2731 NC_011989.1 2265782 2266315 R hypothetical protein complement(2265782..2266315) Agrobacterium vitis S4 7388386 YP_002549976.1 CDS Avi_2732 NC_011989.1 2266323 2266664 R hypothetical protein complement(2266323..2266664) Agrobacterium vitis S4 7388387 YP_002549977.1 CDS hmuT NC_011989.1 2266953 2267891 D ABC transporter substrate binding protein (hemin) 2266953..2267891 Agrobacterium vitis S4 7388388 YP_002549978.1 CDS hmuU NC_011989.1 2267888 2268973 D hemin ABC transporter permease 2267888..2268973 Agrobacterium vitis S4 7388389 YP_002549979.1 CDS hmuV NC_011989.1 2269003 2269791 D ABC transporter nucleotide binding/ATPase (hemin) 2269003..2269791 Agrobacterium vitis S4 7388390 YP_002549980.1 CDS Avi_2737 NC_011989.1 2270008 2270925 R hypothetical protein complement(2270008..2270925) Agrobacterium vitis S4 7388391 YP_002549981.1 CDS Avi_2738 NC_011989.1 2272121 2273560 D hypothetical flagellin 2272121..2273560 Agrobacterium vitis S4 7388392 YP_002549982.1 CDS Avi_2739 NC_011989.1 2273622 2275577 D hypothetical protein 2273622..2275577 Agrobacterium vitis S4 7388393 YP_002549983.1 CDS Avi_2740 NC_011989.1 2276103 2276972 D hypothetical protein 2276103..2276972 Agrobacterium vitis S4 7388394 YP_002549984.1 CDS Avi_2741 NC_011989.1 2277591 2277965 D DNA G:T-mismatch repair endonuclease 2277591..2277965 Agrobacterium vitis S4 7388395 YP_002549985.1 CDS Avi_2742 NC_011989.1 2277962 2279440 D DNA methylase 2277962..2279440 Agrobacterium vitis S4 7388396 YP_002549986.1 CDS Avi_2743 NC_011989.1 2279501 2280985 D hypothetical protein 2279501..2280985 Agrobacterium vitis S4 7388397 YP_002549987.1 CDS Avi_2744 NC_011989.1 2280978 2283734 D hypothetical protein 2280978..2283734 Agrobacterium vitis S4 7388398 YP_002549988.1 CDS Avi_2745 NC_011989.1 2283731 2284714 D hypothetical protein 2283731..2284714 Agrobacterium vitis S4 7388399 YP_002549989.1 CDS Avi_2746 NC_011989.1 2284711 2286810 D hypothetical protein 2284711..2286810 Agrobacterium vitis S4 7388400 YP_002549990.1 CDS Avi_2747 NC_011989.1 2286807 2287643 D hypothetical protein 2286807..2287643 Agrobacterium vitis S4 7388401 YP_002549991.1 CDS Avi_2748 NC_011989.1 2287616 2290348 D hypothetical protein 2287616..2290348 Agrobacterium vitis S4 7388402 YP_002549992.1 CDS Avi_2750 NC_011989.1 2291198 2293045 R hypothetical protein complement(2291198..2293045) Agrobacterium vitis S4 7388403 YP_002549993.1 CDS tnp NC_011989.1 2293347 2293637 D transposase 2293347..2293637 Agrobacterium vitis S4 7388404 YP_002549994.1 CDS tnp NC_011989.1 2293634 2294494 D transposase 2293634..2294494 Agrobacterium vitis S4 7388405 YP_002549995.1 CDS Avi_2756 NC_011989.1 2295920 2296357 R hypothetical protein complement(2295920..2296357) Agrobacterium vitis S4 7388407 YP_002549996.1 CDS Avi_2757 NC_011989.1 2296588 2296908 D hypothetical protein 2296588..2296908 Agrobacterium vitis S4 7388408 YP_002549997.1 CDS vgrG NC_011989.1 2297488 2299812 D vgrG protein 2297488..2299812 Agrobacterium vitis S4 7388409 YP_002549998.1 CDS Avi_2759 NC_011989.1 2299818 2300891 D hypothetical protein 2299818..2300891 Agrobacterium vitis S4 7388410 YP_002549999.1 CDS Avi_2760 NC_011989.1 2300884 2302506 D hypothetical protein 2300884..2302506 Agrobacterium vitis S4 7388411 YP_002550000.1 CDS Avi_2761 NC_011989.1 2303112 2303699 D hypothetical protein 2303112..2303699 Agrobacterium vitis S4 7388412 YP_002550001.1 CDS Avi_2762 NC_011989.1 2303735 2304241 D hypothetical protein 2303735..2304241 Agrobacterium vitis S4 7388413 YP_002550002.1 CDS Avi_2763 NC_011989.1 2304307 2304771 R hypothetical protein complement(2304307..2304771) Agrobacterium vitis S4 7388414 YP_002550003.1 CDS Avi_2764 NC_011989.1 2304990 2305652 R transcription antitermination protein complement(2304990..2305652) Agrobacterium vitis S4 7388415 YP_002550004.1 CDS Avi_2765 NC_011989.1 2305639 2307105 R hypothetical protein complement(2305639..2307105) Agrobacterium vitis S4 7388416 YP_002550005.1 CDS Avi_2767 NC_011989.1 2307238 2307813 D transcriptional regulator 2307238..2307813 Agrobacterium vitis S4 7388417 YP_002550006.1 CDS Avi_2770 NC_011989.1 2308160 2308333 D hypothetical protein 2308160..2308333 Agrobacterium vitis S4 7388418 YP_002550007.1 CDS intD NC_011989.1 2308878 2309813 D phage-related integrase 2308878..2309813 Agrobacterium vitis S4 7388419 YP_002550008.1 CDS Avi_2772 NC_011989.1 2310090 2311007 R phenazine antibiotic biosynthesis related protein complement(2310090..2311007) Agrobacterium vitis S4 7387173 YP_002550009.1 CDS Avi_2774 NC_011989.1 2311082 2311837 R hypothetical protein complement(2311082..2311837) Agrobacterium vitis S4 7388421 YP_002550010.1 CDS mcpA NC_011989.1 2312094 2313770 R methyl-accepting chemotaxis protein complement(2312094..2313770) Agrobacterium vitis S4 7388422 YP_002550011.1 CDS Avi_2776 NC_011989.1 2314181 2315053 D transcriptional regulator 2314181..2315053 Agrobacterium vitis S4 7385917 YP_002550012.1 CDS ilvC NC_011989.1 2315403 2316422 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(2315403..2316422) Agrobacterium vitis S4 7385918 YP_002550013.1 CDS Avi_2780 NC_011989.1 2316480 2317118 R TetR family transcriptional regulator complement(2316480..2317118) Agrobacterium vitis S4 7385919 YP_002550014.1 CDS Avi_2782 NC_011989.1 2317417 2317926 R this stereospecific enzymes reduces the S isomer of methionine sulfoxide while MsrB reduces the R form; provides protection against oxidative stress; methionine sulfoxide reductase A complement(2317417..2317926) Agrobacterium vitis S4 7385920 YP_002550015.1 CDS Avi_2784 NC_011989.1 2318741 2319037 R hypothetical protein complement(2318741..2319037) Agrobacterium vitis S4 7385921 YP_002550016.1 CDS Avi_2786 NC_011989.1 2319780 2320244 R transcriptional regulator AsnC family complement(2319780..2320244) Agrobacterium vitis S4 7385922 YP_002550017.1 CDS Avi_2787 NC_011989.1 2320419 2321132 D aspartate racemase 2320419..2321132 Agrobacterium vitis S4 7385923 YP_002550018.1 CDS Avi_2789 NC_011989.1 2321203 2321823 D transcriptional regulator 2321203..2321823 Agrobacterium vitis S4 7385924 YP_002550019.1 CDS Avi_2790 NC_011989.1 2321980 2323200 D MFS permease 2321980..2323200 Agrobacterium vitis S4 7385925 YP_002550020.1 CDS mcpA NC_011989.1 2323273 2325141 R methyl-accepting chemotaxis protein complement(2323273..2325141) Agrobacterium vitis S4 7385926 YP_002550021.1 CDS Avi_2792 NC_011989.1 2325506 2325916 R hypothetical protein complement(2325506..2325916) Agrobacterium vitis S4 7385927 YP_002550022.1 CDS Avi_2793 NC_011989.1 2326155 2327030 D hypothetical protein 2326155..2327030 Agrobacterium vitis S4 7385928 YP_002550023.1 CDS pdxJ NC_011989.1 2327159 2327911 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(2327159..2327911) Agrobacterium vitis S4 7385929 YP_002550024.1 CDS Avi_2795 NC_011989.1 2328476 2329168 D transcriptional regulator 2328476..2329168 Agrobacterium vitis S4 7385930 YP_002550025.1 CDS Avi_2796 NC_011989.1 2329200 2330330 R exodeoxyribonuclease V complement(2329200..2330330) Agrobacterium vitis S4 7385931 YP_002550026.1 CDS rhtB NC_011989.1 2330379 2330972 R RhtB family transporter complement(2330379..2330972) Agrobacterium vitis S4 7385932 YP_002550027.1 CDS Avi_2798 NC_011989.1 2331122 2331967 D aldo/keto reductase 2331122..2331967 Agrobacterium vitis S4 7385933 YP_002550028.1 CDS Avi_2799 NC_011989.1 2331986 2332300 R hypothetical protein complement(2331986..2332300) Agrobacterium vitis S4 7385934 YP_002550029.1 CDS ilvH NC_011989.1 2332502 2333074 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(2332502..2333074) Agrobacterium vitis S4 7385935 YP_002550030.1 CDS ilvI NC_011989.1 2333096 2334853 R acetolactate synthase 3 catalytic subunit complement(2333096..2334853) Agrobacterium vitis S4 7385936 YP_002550031.1 CDS Avi_2804 NC_011989.1 2335231 2337312 D hypothetical protein 2335231..2337312 Agrobacterium vitis S4 7385937 YP_002550032.1 CDS Avi_2805 NC_011989.1 2337316 2338452 D hypothetical protein 2337316..2338452 Agrobacterium vitis S4 7385938 YP_002550033.1 CDS miaA NC_011989.1 2338843 2339757 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(2338843..2339757) Agrobacterium vitis S4 7385939 YP_002550034.1 CDS serB NC_011989.1 2339756 2340646 D phosphoserine phosphatase 2339756..2340646 Agrobacterium vitis S4 7385940 YP_002550035.1 CDS Avi_2810 NC_011989.1 2340656 2341222 D acetyltransferase 2340656..2341222 Agrobacterium vitis S4 7385941 YP_002550036.1 CDS htrA NC_011989.1 2341285 2342871 R serine protease complement(2341285..2342871) Agrobacterium vitis S4 7385942 YP_002550037.1 CDS hflC NC_011989.1 2343136 2344053 R HFLC protein complement(2343136..2344053) Agrobacterium vitis S4 7385943 YP_002550038.1 CDS hflK NC_011989.1 2344055 2345206 R HFLK protein complement(2344055..2345206) Agrobacterium vitis S4 7385944 YP_002550039.1 CDS folA NC_011989.1 2345416 2345937 R dihydrofolate reductase complement(2345416..2345937) Agrobacterium vitis S4 7385945 YP_002550040.1 CDS Avi_2820 NC_011989.1 2346051 2346443 R hypothetical protein complement(2346051..2346443) Agrobacterium vitis S4 7385946 YP_002550041.1 CDS thyA NC_011989.1 2346679 2347473 R thymidylate synthase complement(2346679..2347473) Agrobacterium vitis S4 7385947 YP_002550042.1 CDS Avi_2824 NC_011989.1 2348274 2348783 D hypothetical protein 2348274..2348783 Agrobacterium vitis S4 7387981 YP_002550043.1 CDS Avi_2825 NC_011989.1 2348810 2349022 D hypothetical protein 2348810..2349022 Agrobacterium vitis S4 7385949 YP_002550044.1 CDS Avi_2826 NC_011989.1 2349130 2349372 D hypothetical protein 2349130..2349372 Agrobacterium vitis S4 7385950 YP_002550045.1 CDS Avi_2827 NC_011989.1 2349705 2349983 D hypothetical protein 2349705..2349983 Agrobacterium vitis S4 7385951 YP_002550046.1 CDS Avi_2828 NC_011989.1 2350112 2353804 R hypothetical protein complement(2350112..2353804) Agrobacterium vitis S4 7385952 YP_002550047.1 CDS Avi_2829 NC_011989.1 2353880 2355289 R FAD dependent oxidoreductase complement(2353880..2355289) Agrobacterium vitis S4 7385953 YP_002550048.1 CDS pstB NC_011989.1 2355410 2356246 R phosphate ABC transporter ATP-binding protein complement(2355410..2356246) Agrobacterium vitis S4 7385954 YP_002550049.1 CDS pstA NC_011989.1 2356247 2357098 R phosphate ABC transporter permease complement(2356247..2357098) Agrobacterium vitis S4 7385955 YP_002550050.1 CDS pstC NC_011989.1 2357108 2358082 R phosphate ABC transporter permease complement(2357108..2358082) Agrobacterium vitis S4 7385956 YP_002550051.1 CDS Avi_2833 NC_011989.1 2358182 2359231 R periplasmic phosphate-binding protein (PBP) complement(2358182..2359231) Agrobacterium vitis S4 7385957 YP_002550052.1 CDS pcrA NC_011989.1 2359507 2362083 D DNA helicase II 2359507..2362083 Agrobacterium vitis S4 7385958 YP_002550053.1 CDS Avi_2837 NC_011989.1 2362149 2363147 D hypothetical protein 2362149..2363147 Agrobacterium vitis S4 7385959 YP_002550054.1 CDS Avi_2838 NC_011989.1 2363285 2363551 D Antitoxin of toxin-antitoxin stability system 2363285..2363551 Agrobacterium vitis S4 7385960 YP_002550055.1 CDS Avi_2839 NC_011989.1 2363548 2363970 D nucleic acid-binding protein contains PIN domain 2363548..2363970 Agrobacterium vitis S4 7385961 YP_002550056.1 CDS gcd NC_011989.1 2364705 2367038 R glucose dehydrogenase complement(2364705..2367038) Agrobacterium vitis S4 7385962 YP_002550057.1 CDS pncA NC_011989.1 2367241 2367867 D pyrazinamidase/nicotinamidase 2367241..2367867 Agrobacterium vitis S4 7385963 YP_002550058.1 CDS panC NC_011989.1 2367912 2368781 D catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase 2367912..2368781 Agrobacterium vitis S4 7385964 YP_002550059.1 CDS panB NC_011989.1 2368778 2369602 D catalyzes the formation of tetrahydrofolate and 2-dehydropantoate from 5,10-methylenetetrahydrofolate and 3-methyl-2-oxobutanoate; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2368778..2369602 Agrobacterium vitis S4 7385965 YP_002550060.1 CDS Avi_2848 NC_011989.1 2369656 2370390 R hypothetical protein complement(2369656..2370390) Agrobacterium vitis S4 7385966 YP_002550061.1 CDS nadB NC_011989.1 2370402 2372009 R L-aspartate oxidase complement(2370402..2372009) Agrobacterium vitis S4 7385967 YP_002550062.1 CDS Avi_2851 NC_011989.1 2372227 2372490 R hypothetical protein complement(2372227..2372490) Agrobacterium vitis S4 7385968 YP_002550063.1 CDS Avi_2852 NC_011989.1 2372799 2373509 D hypothetical protein 2372799..2373509 Agrobacterium vitis S4 7385969 YP_002550064.1 CDS Avi_2853 NC_011989.1 2373506 2373814 D hypothetical protein 2373506..2373814 Agrobacterium vitis S4 7385970 YP_002550065.1 CDS Avi_2855 NC_011989.1 2374426 2376273 R aminopeptidase P complement(2374426..2376273) Agrobacterium vitis S4 7385971 YP_002550066.1 CDS prmA NC_011989.1 2377027 2377899 R methylates ribosomal protein L11 at multiple amino acid positions; mutations of these genes in Escherichia coli or Thermus thermophilus has no apparent phenotype; ribosomal protein L11 methyltransferase complement(2377027..2377899) Agrobacterium vitis S4 7385972 YP_002550067.1 CDS Avi_2858 NC_011989.1 2378019 2378618 R cytochrome c oxidase assembly factor transmembrane protein complement(2378019..2378618) Agrobacterium vitis S4 7385973 YP_002550068.1 CDS mcpG NC_011989.1 2379122 2381128 D methyl-accepting chemotaxis protein 2379122..2381128 Agrobacterium vitis S4 7385974 YP_002550069.1 CDS cheW NC_011989.1 2381132 2381596 D chemotaxis protein 2381132..2381596 Agrobacterium vitis S4 7385975 YP_002550070.1 CDS Avi_2863 NC_011989.1 2381908 2382252 D hypothetical protein 2381908..2382252 Agrobacterium vitis S4 7385976 YP_002550071.1 CDS Avi_2864 NC_011989.1 2382787 2383275 R hypothetical protein complement(2382787..2383275) Agrobacterium vitis S4 7385977 YP_002550072.1 CDS Avi_2865 NC_011989.1 2383359 2383982 R DNA polymerase III epsilon subunit-like 3-5 exonuclease complement(2383359..2383982) Agrobacterium vitis S4 7385978 YP_002550073.1 CDS Avi_2868 NC_011989.1 2384035 2384676 D hypothetical protein 2384035..2384676 Agrobacterium vitis S4 7385979 YP_002550074.1 CDS mcpG NC_011989.1 2384732 2386561 R methyl-accepting chemotaxis protein complement(2384732..2386561) Agrobacterium vitis S4 7385980 YP_002550075.1 CDS Avi_2870 NC_011989.1 2387083 2387565 D acetyltransferase 2387083..2387565 Agrobacterium vitis S4 7385981 YP_002550076.1 CDS deaD NC_011989.1 2387742 2389763 D cold-shock dead-box protein A 2387742..2389763 Agrobacterium vitis S4 7385982 YP_002550077.1 CDS Avi_2873 NC_011989.1 2390036 2391976 D amine oxidase flavin-containing 2390036..2391976 Agrobacterium vitis S4 7385983 YP_002550078.1 CDS Avi_2874 NC_011989.1 2392121 2393062 D hypothetical protein 2392121..2393062 Agrobacterium vitis S4 7385984 YP_002550079.1 CDS Avi_2875 NC_011989.1 2393235 2393573 R hypothetical protein complement(2393235..2393573) Agrobacterium vitis S4 7385985 YP_002550080.1 CDS ligA NC_011989.1 2393822 2395981 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(2393822..2395981) Agrobacterium vitis S4 7385986 YP_002550081.1 CDS Avi_2877 NC_011989.1 2396043 2396876 R hypothetical protein complement(2396043..2396876) Agrobacterium vitis S4 7385987 YP_002550082.1 CDS cls NC_011989.1 2396915 2398363 R cardiolipin synthase complement(2396915..2398363) Agrobacterium vitis S4 7385988 YP_002550083.1 CDS recN NC_011989.1 2398514 2400187 R DNA repair protein RecN complement(2398514..2400187) Agrobacterium vitis S4 7385989 YP_002550084.1 CDS Avi_2880 NC_011989.1 2400234 2401103 R hypothetical protein complement(2400234..2401103) Agrobacterium vitis S4 7385990 YP_002550085.1 CDS lpxC NC_011989.1 2401482 2402387 R zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase complement(2401482..2402387) Agrobacterium vitis S4 7385991 YP_002550086.1 CDS ftsZ2 NC_011989.1 2402897 2404756 R GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ complement(2402897..2404756) Agrobacterium vitis S4 7385992 YP_002550087.1 CDS ftsA NC_011989.1 2404814 2406139 R cell division protein complement(2404814..2406139) Agrobacterium vitis S4 7385993 YP_002550088.1 CDS ftsQ NC_011989.1 2406136 2407065 R cell division protein complement(2406136..2407065) Agrobacterium vitis S4 7385994 YP_002550089.1 CDS ddl NC_011989.1 2407062 2407964 R D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase complement(2407062..2407964) Agrobacterium vitis S4 7385995 YP_002550090.1 CDS Avi_2888 NC_011989.1 2409142 2410446 D sugar ABC transporter permease 2409142..2410446 Agrobacterium vitis S4 7385996 YP_002550091.1 CDS murB NC_011989.1 2410563 2411537 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(2410563..2411537) Agrobacterium vitis S4 7385997 YP_002550092.1 CDS murC NC_011989.1 2411534 2412949 R Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase complement(2411534..2412949) Agrobacterium vitis S4 7385998 YP_002550093.1 CDS murG NC_011989.1 2412946 2414067 R UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase complement(2412946..2414067) Agrobacterium vitis S4 7385999 YP_002550094.1 CDS ftsW NC_011989.1 2414086 2415240 R cell division protein complement(2414086..2415240) Agrobacterium vitis S4 7386000 YP_002550095.1 CDS murD NC_011989.1 2415242 2416657 R UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase complement(2415242..2416657) Agrobacterium vitis S4 7386083 YP_002550096.1 CDS mraY NC_011989.1 2416665 2417765 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(2416665..2417765) Agrobacterium vitis S4 7386084 YP_002550097.1 CDS murF NC_011989.1 2417818 2419251 R UDP-MurNAc-pentapeptide synthetase complement(2417818..2419251) Agrobacterium vitis S4 7386085 YP_002550098.1 CDS murE NC_011989.1 2419248 2420708 R involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(2419248..2420708) Agrobacterium vitis S4 7386086 YP_002550099.1 CDS Avi_2897 NC_011989.1 2420773 2422524 R penicillin binding protein 2 complement(2420773..2422524) Agrobacterium vitis S4 7386087 YP_002550100.1 CDS Avi_2898 NC_011989.1 2422521 2422940 R hypothetical protein complement(2422521..2422940) Agrobacterium vitis S4 7386088 YP_002550101.1 CDS mraW NC_011989.1 2422944 2423969 R S-adenosyl-methyltransferase MraW complement(2422944..2423969) Agrobacterium vitis S4 7386089 YP_002550102.1 CDS Avi_2899 NC_011989.1 2424086 2424526 R MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ complement(2424086..2424526) Agrobacterium vitis S4 7386091 YP_002550103.1 CDS Avi_2901 NC_011989.1 2425407 2426600 R sarcosine oxidase complement(2425407..2426600) Agrobacterium vitis S4 7387982 YP_002550104.1 CDS slt NC_011989.1 2426763 2427356 R soluble lytic transglycosylase complement(2426763..2427356) Agrobacterium vitis S4 7386092 YP_002550105.1 CDS Avi_2906 NC_011989.1 2427652 2428410 R N-acetylmuramoyl-L-alanine amidase complement(2427652..2428410) Agrobacterium vitis S4 7386093 YP_002550106.1 CDS djlA NC_011989.1 2428407 2429144 R molecular chaperone DnaJ family complement(2428407..2429144) Agrobacterium vitis S4 7386094 YP_002550107.1 CDS pfp NC_011989.1 2429465 2430679 D catalyzes the formation of fructose 1,6-bisphosphate from fructose 6-phosphate and diphosphate; pyrophosphate--fructose-6-phosphate 1-phosphotransferase 2429465..2430679 Agrobacterium vitis S4 7386095 YP_002550108.1 CDS Avi_2910 NC_011989.1 2430919 2431554 D hypothetical protein 2430919..2431554 Agrobacterium vitis S4 7386096 YP_002550109.1 CDS Avi_2912 NC_011989.1 2431809 2432915 D lytic murein transglycosylase 2431809..2432915 Agrobacterium vitis S4 7386097 YP_002550110.1 CDS Avi_2913 NC_011989.1 2432970 2434349 R Hydrolatse transmembrane protein complement(2432970..2434349) Agrobacterium vitis S4 7386098 YP_002550111.1 CDS Avi_2914 NC_011989.1 2434642 2435889 D hypothetical protein 2434642..2435889 Agrobacterium vitis S4 7386099 YP_002550112.1 CDS Avi_2916 NC_011989.1 2435952 2436572 D O-methyltransferase 2435952..2436572 Agrobacterium vitis S4 7386100 YP_002550113.1 CDS lyc NC_011989.1 2436794 2437597 D glycosyl hydrolase/lysozyme 2436794..2437597 Agrobacterium vitis S4 7386101 YP_002550114.1 CDS mltB NC_011989.1 2437714 2438904 D lytic murein transglycosylase 2437714..2438904 Agrobacterium vitis S4 7386102 YP_002550115.1 CDS Avi_2922 NC_011989.1 2439106 2439672 D hydrolase 2439106..2439672 Agrobacterium vitis S4 7386103 YP_002550116.1 CDS Avi_2923 NC_011989.1 2439678 2440679 D AraC family transcriptional regulator 2439678..2440679 Agrobacterium vitis S4 7386104 YP_002550117.1 CDS metF NC_011989.1 2441259 2442176 R methylenetetrahydrofolate reductase complement(2441259..2442176) Agrobacterium vitis S4 7386105 YP_002550118.1 CDS Avi_2926 NC_011989.1 2442176 2443201 R transcriptional regulator ArsR family complement(2442176..2443201) Agrobacterium vitis S4 7386106 YP_002550119.1 CDS mcpC NC_011989.1 2443404 2445596 R methyl-accepting chemotaxis protein complement(2443404..2445596) Agrobacterium vitis S4 7386107 YP_002550120.1 CDS mcpC NC_011989.1 2445901 2448279 R methyl-accepting chemotaxis protein complement(2445901..2448279) Agrobacterium vitis S4 7386108 YP_002550121.1 CDS chvD NC_011989.1 2448409 2450058 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(2448409..2450058) Agrobacterium vitis S4 7386109 YP_002550122.1 CDS Avi_2930 NC_011989.1 2450205 2450927 R Ribonuclease complement(2450205..2450927) Agrobacterium vitis S4 7386110 YP_002550123.1 CDS Avi_2931 NC_011989.1 2451115 2452065 D hypothetical protein 2451115..2452065 Agrobacterium vitis S4 7386111 YP_002550124.1 CDS Avi_2932 NC_011989.1 2452085 2453113 D permease 2452085..2453113 Agrobacterium vitis S4 7386112 YP_002550125.1 CDS iivG NC_011989.1 2453144 2454796 D thiamine pyrophosphate protein 2453144..2454796 Agrobacterium vitis S4 7386113 YP_002550126.1 CDS Avi_2934 NC_011989.1 2454857 2455333 R Transcriptional regulator protein complement(2454857..2455333) Agrobacterium vitis S4 7386114 YP_002550127.1 CDS Avi_2935 NC_011989.1 2455429 2455869 D hypothetical protein 2455429..2455869 Agrobacterium vitis S4 7386115 YP_002550128.1 CDS Avi_2936 NC_011989.1 2455925 2456266 R hypothetical protein complement(2455925..2456266) Agrobacterium vitis S4 7386116 YP_002550129.1 CDS Avi_2938 NC_011989.1 2456342 2456677 R hypothetical protein complement(2456342..2456677) Agrobacterium vitis S4 7386117 YP_002550130.1 CDS Avi_2941 NC_011989.1 2456781 2457611 R hypothetical protein complement(2456781..2457611) Agrobacterium vitis S4 7386118 YP_002550131.1 CDS Avi_2943 NC_011989.1 2458074 2459345 D hypothetical protein 2458074..2459345 Agrobacterium vitis S4 7386119 YP_002550132.1 CDS Avi_2944 NC_011989.1 2459433 2460149 R ParA chromosome partitioning protein complement(2459433..2460149) Agrobacterium vitis S4 7386120 YP_002550133.1 CDS Avi_2945 NC_011989.1 2460326 2461471 R dehydrogenase complement(2460326..2461471) Agrobacterium vitis S4 7386121 YP_002550134.1 CDS Avi_2946 NC_011989.1 2461788 2463359 R Amino acid permease complement(2461788..2463359) Agrobacterium vitis S4 7386122 YP_002550135.1 CDS Avi_2948 NC_011989.1 2464230 2465330 D ABC transporter substrate-binding protein 2464230..2465330 Agrobacterium vitis S4 7386123 YP_002550136.1 CDS Avi_2949 NC_011989.1 2465418 2466410 D ABC transporter permease 2465418..2466410 Agrobacterium vitis S4 7386124 YP_002550137.1 CDS Avi_2950 NC_011989.1 2466407 2467258 D ABC transporter 2466407..2467258 Agrobacterium vitis S4 7386125 YP_002550138.1 CDS Avi_2951 NC_011989.1 2467255 2468313 D ABC transporter ATPase 2467255..2468313 Agrobacterium vitis S4 7386126 YP_002550139.1 CDS Avi_2952 NC_011989.1 2468453 2470180 D sensory methylation accepting chemotaxis protein 2468453..2470180 Agrobacterium vitis S4 7386127 YP_002550140.1 CDS Avi_2954 NC_011989.1 2470335 2471228 D hypothetical protein 2470335..2471228 Agrobacterium vitis S4 7386128 YP_002550141.1 CDS hisC NC_011989.1 2471231 2472289 R histidinol-phosphate aminotransferase complement(2471231..2472289) Agrobacterium vitis S4 7386129 YP_002550142.1 CDS Avi_2957 NC_011989.1 2472612 2473343 D transcriptional regulator protein 2472612..2473343 Agrobacterium vitis S4 7386130 YP_002550143.1 CDS Avi_2958 NC_011989.1 2473658 2474062 D transcriptional regulator HTH family 2473658..2474062 Agrobacterium vitis S4 7386131 YP_002550144.1 CDS nodX NC_011989.1 2474403 2475572 D sugar acetylase 2474403..2475572 Agrobacterium vitis S4 7386132 YP_002550145.1 CDS Avi_2961 NC_011989.1 2475617 2476099 R acetyltransferase complement(2475617..2476099) Agrobacterium vitis S4 7386133 YP_002550146.1 CDS Avi_2962 NC_011989.1 2476186 2476566 R transcriptional regulator complement(2476186..2476566) Agrobacterium vitis S4 7386134 YP_002550147.1 CDS Avi_2963 NC_011989.1 2476609 2477460 D hypothetical protein 2476609..2477460 Agrobacterium vitis S4 7386135 YP_002550148.1 CDS Avi_2964 NC_011989.1 2477565 2478137 R hypothetical protein complement(2477565..2478137) Agrobacterium vitis S4 7386136 YP_002550149.1 CDS metH NC_011989.1 2478217 2481990 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(2478217..2481990) Agrobacterium vitis S4 7386137 YP_002550150.1 CDS Avi_2967 NC_011989.1 2482249 2483505 D hypothetical protein 2482249..2483505 Agrobacterium vitis S4 7386138 YP_002550151.1 CDS Avi_2969 NC_011989.1 2483627 2484259 D hypothetical protein 2483627..2484259 Agrobacterium vitis S4 7386139 YP_002550152.1 CDS Avi_2970 NC_011989.1 2484306 2484638 R hypothetical protein complement(2484306..2484638) Agrobacterium vitis S4 7386140 YP_002550153.1 CDS yci NC_011989.1 2484913 2485734 R nuclease complement(2484913..2485734) Agrobacterium vitis S4 7386141 YP_002550154.1 CDS copC NC_011989.1 2485920 2486351 R copper tolerance protein complement(2485920..2486351) Agrobacterium vitis S4 7386142 YP_002550155.1 CDS Avi_2977 NC_011989.1 2486432 2487835 R GntR family transcriptional regulator complement(2486432..2487835) Agrobacterium vitis S4 7386143 YP_002550156.1 CDS Avi_2978 NC_011989.1 2487943 2488806 D hypothetical protein 2487943..2488806 Agrobacterium vitis S4 7386144 YP_002550157.1 CDS omp NC_011989.1 2489104 2489742 D outer membrane protein 2489104..2489742 Agrobacterium vitis S4 7386145 YP_002550158.1 CDS Avi_2980 NC_011989.1 2489802 2490548 R hypothetical conserved membrane protein complement(2489802..2490548) Agrobacterium vitis S4 7386146 YP_002550159.1 CDS Avi_2981 NC_011989.1 2491006 2491890 R hypothetical protein complement(2491006..2491890) Agrobacterium vitis S4 7387162 YP_002550160.1 CDS Avi_2982 NC_011989.1 2492032 2492922 D hypothetical protein 2492032..2492922 Agrobacterium vitis S4 7386148 YP_002550161.1 CDS Avi_2983 NC_011989.1 2493561 2495816 R hypothetical protein complement(2493561..2495816) Agrobacterium vitis S4 7386149 YP_002550162.1 CDS Avi_2984 NC_011989.1 2495825 2499160 R tail fiber protein complement(2495825..2499160) Agrobacterium vitis S4 7386150 YP_002550163.1 CDS Avi_2985 NC_011989.1 2499157 2499576 R tail assembly protein complement(2499157..2499576) Agrobacterium vitis S4 7386151 YP_002550164.1 CDS Avi_2988 NC_011989.1 2500260 2500682 R hypothetical protein complement(2500260..2500682) Agrobacterium vitis S4 7386152 YP_002550165.1 CDS Avi_2989 NC_011989.1 2500679 2504485 R hypothetical protein complement(2500679..2504485) Agrobacterium vitis S4 7386153 YP_002550166.1 CDS Avi_2990 NC_011989.1 2504482 2504841 R hypothetical protein complement(2504482..2504841) Agrobacterium vitis S4 7386154 YP_002550167.1 CDS Avi_2992 NC_011989.1 2505018 2505308 D hypothetical protein 2505018..2505308 Agrobacterium vitis S4 7386155 YP_002550168.1 CDS Avi_2995 NC_011989.1 2505323 2506249 R hypothetical protein complement(2505323..2506249) Agrobacterium vitis S4 7386156 YP_002550169.1 CDS Avi_2996 NC_011989.1 2506419 2506835 R hypothetical protein complement(2506419..2506835) Agrobacterium vitis S4 7386157 YP_002550170.1 CDS Avi_2997 NC_011989.1 2506832 2507407 R Mu-like prophage protein complement(2506832..2507407) Agrobacterium vitis S4 7386158 YP_002550171.1 CDS Avi_2998 NC_011989.1 2507409 2507846 R hypothetical protein complement(2507409..2507846) Agrobacterium vitis S4 7386159 YP_002550172.1 CDS Avi_3000 NC_011989.1 2507858 2508199 R hypothetical protein complement(2507858..2508199) Agrobacterium vitis S4 7386160 YP_002550173.1 CDS Avi_3001 NC_011989.1 2508307 2509203 R major head subunit protein complement(2508307..2509203) Agrobacterium vitis S4 7386161 YP_002550174.1 CDS Avi_3002 NC_011989.1 2509216 2509623 R hypothetical protein complement(2509216..2509623) Agrobacterium vitis S4 7386162 YP_002550175.1 CDS Avi_3003 NC_011989.1 2509620 2510591 R I protein complement(2509620..2510591) Agrobacterium vitis S4 7386163 YP_002550176.1 CDS Avi_3005 NC_011989.1 2511068 2512363 R prophage MuSo2 F protein complement(2511068..2512363) Agrobacterium vitis S4 7386164 YP_002550177.1 CDS Avi_3006 NC_011989.1 2512360 2513913 R hypothetical protein complement(2512360..2513913) Agrobacterium vitis S4 7388588 YP_002550178.1 CDS Avi_3008 NC_011989.1 2513913 2515556 R hypothetical protein complement(2513913..2515556) Agrobacterium vitis S4 7388589 YP_002550179.1 CDS Avi_3009 NC_011989.1 2515553 2516137 R methyl-accepting chemotaxis protein complement(2515553..2516137) Agrobacterium vitis S4 7388590 YP_002550180.1 CDS Avi_3010 NC_011989.1 2516140 2516457 R hypothetical protein complement(2516140..2516457) Agrobacterium vitis S4 7388591 YP_002550181.1 CDS clpB NC_011989.1 2516438 2516821 R ATP-dependent Clp protease ATP-binding subunit complement(2516438..2516821) Agrobacterium vitis S4 7388592 YP_002550182.1 CDS Avi_3012 NC_011989.1 2516818 2517129 R hypothetical protein complement(2516818..2517129) Agrobacterium vitis S4 7388593 YP_002550183.1 CDS Avi_3013 NC_011989.1 2517213 2517590 D hypothetical protein 2517213..2517590 Agrobacterium vitis S4 7388594 YP_002550184.1 CDS Avi_3017 NC_011989.1 2518026 2518532 R Membrane-bound lytic murein transglycosylase B protein complement(2518026..2518532) Agrobacterium vitis S4 7388595 YP_002550185.1 CDS Avi_3018 NC_011989.1 2518634 2518993 R hypothetical protein complement(2518634..2518993) Agrobacterium vitis S4 7388596 YP_002550186.1 CDS Avi_3019 NC_011989.1 2519127 2519456 D hypothetical protein 2519127..2519456 Agrobacterium vitis S4 7388597 YP_002550187.1 CDS Avi_3023 NC_011989.1 2519467 2520090 D hypothetical protein 2519467..2520090 Agrobacterium vitis S4 7388598 YP_002550188.1 CDS Avi_3025 NC_011989.1 2520041 2520688 R hypothetical protein complement(2520041..2520688) Agrobacterium vitis S4 7388599 YP_002550189.1 CDS Avi_3027 NC_011989.1 2520685 2520975 R hypothetical protein complement(2520685..2520975) Agrobacterium vitis S4 7388600 YP_002550190.1 CDS Avi_3030 NC_011989.1 2521932 2522585 R hypothetical protein complement(2521932..2522585) Agrobacterium vitis S4 7388601 YP_002550191.1 CDS Avi_3033 NC_011989.1 2523430 2524461 R hypothetical protein complement(2523430..2524461) Agrobacterium vitis S4 7388602 YP_002550192.1 CDS Avi_3035 NC_011989.1 2524499 2526571 R transposase complement(2524499..2526571) Agrobacterium vitis S4 7388603 YP_002550193.1 CDS Avi_3037 NC_011989.1 2526771 2527232 R hypothetical protein complement(2526771..2527232) Agrobacterium vitis S4 7388604 YP_002550194.1 CDS Avi_3038 NC_011989.1 2527229 2528056 R transcriptional regulator protein complement(2527229..2528056) Agrobacterium vitis S4 7388605 YP_002550195.1 CDS Avi_3040 NC_011989.1 2528315 2528674 R hypothetical protein complement(2528315..2528674) Agrobacterium vitis S4 7388606 YP_002550196.1 CDS Avi_3041 NC_011989.1 2528881 2529201 R hypothetical protein complement(2528881..2529201) Agrobacterium vitis S4 7388607 YP_002550197.1 CDS Avi_9915 NC_011989.1 2530549 2530770 D phage-related gp54 protein 2530549..2530770 Agrobacterium vitis S4 7388608 YP_002550198.1 CDS Avi_3042 NC_011989.1 2531426 2531923 D hypothetical protein 2531426..2531923 Agrobacterium vitis S4 7387971 YP_002550199.1 CDS Avi_3043 NC_011989.1 2531920 2533056 D hypothetical protein 2531920..2533056 Agrobacterium vitis S4 7388609 YP_002550200.1 CDS istA NC_011989.1 2533365 2534882 D IS21 family transposase 2533365..2534882 Agrobacterium vitis S4 7388610 YP_002550201.1 CDS istB NC_011989.1 2534872 2535666 D IS21 family transposase 2534872..2535666 Agrobacterium vitis S4 7388611 YP_002550202.1 CDS Avi_3047 NC_011989.1 2536851 2538404 R hypothetical protein complement(2536851..2538404) Agrobacterium vitis S4 7388613 YP_002550203.1 CDS Avi_3048 NC_011989.1 2538404 2539762 R hypothetical protein complement(2538404..2539762) Agrobacterium vitis S4 7388614 YP_002550204.1 CDS Avi_3049 NC_011989.1 2539759 2540358 R hypothetical protein complement(2539759..2540358) Agrobacterium vitis S4 7388615 YP_002550205.1 CDS Avi_3052 NC_011989.1 2540659 2541042 R kinesin protein complement(2540659..2541042) Agrobacterium vitis S4 7388616 YP_002550206.1 CDS Avi_3053 NC_011989.1 2541039 2541257 R DnaK suppressor protein complement(2541039..2541257) Agrobacterium vitis S4 7388617 YP_002550207.1 CDS Avi_3055 NC_011989.1 2541452 2541805 R hypothetical protein complement(2541452..2541805) Agrobacterium vitis S4 7388618 YP_002550208.1 CDS pntB NC_011989.1 2541802 2542074 R NAD(P)+ transhydrogenase beta chain complement(2541802..2542074) Agrobacterium vitis S4 7388619 YP_002550209.1 CDS Avi_3058 NC_011989.1 2542247 2542786 R Membrane-bound lytic murein transglycosylase B protein complement(2542247..2542786) Agrobacterium vitis S4 7388620 YP_002550210.1 CDS Avi_3060 NC_011989.1 2543206 2543859 R hypothetical protein complement(2543206..2543859) Agrobacterium vitis S4 7388621 YP_002550211.1 CDS Avi_3062 NC_011989.1 2544104 2544757 R hypothetical protein complement(2544104..2544757) Agrobacterium vitis S4 7388622 YP_002550212.1 CDS Avi_3065 NC_011989.1 2545274 2545495 D hypothetical protein 2545274..2545495 Agrobacterium vitis S4 7388623 YP_002550213.1 CDS Avi_3067 NC_011989.1 2545647 2546690 R hypothetical protein complement(2545647..2546690) Agrobacterium vitis S4 7388624 YP_002550214.1 CDS Avi_3068 NC_011989.1 2546728 2548794 R transposase complement(2546728..2548794) Agrobacterium vitis S4 7388625 YP_002550215.1 CDS Avi_3069 NC_011989.1 2548791 2549255 R hypothetical protein complement(2548791..2549255) Agrobacterium vitis S4 7388626 YP_002550216.1 CDS Avi_3073 NC_011989.1 2550108 2550458 R hypothetical genomic island protein complement(2550108..2550458) Agrobacterium vitis S4 7388628 YP_002550217.1 CDS Avi_3074 NC_011989.1 2550909 2551268 R hypothetical protein complement(2550909..2551268) Agrobacterium vitis S4 7388629 YP_002550218.1 CDS Avi_3075 NC_011989.1 2551299 2551637 R hypothetical protein complement(2551299..2551637) Agrobacterium vitis S4 7388630 YP_002550219.1 CDS Avi_3076 NC_011989.1 2551806 2552465 D transcriptional regulator 2551806..2552465 Agrobacterium vitis S4 7388631 YP_002550220.1 CDS Avi_3077 NC_011989.1 2552586 2553059 D hypothetical protein 2552586..2553059 Agrobacterium vitis S4 7388632 YP_002550221.1 CDS Avi_3078 NC_011989.1 2553264 2555780 R heat shock protein complement(2553264..2555780) Agrobacterium vitis S4 7388633 YP_002550222.1 CDS Avi_3079 NC_011989.1 2556154 2558097 R hypothetical protein complement(2556154..2558097) Agrobacterium vitis S4 7388634 YP_002550223.1 CDS Avi_3084 NC_011989.1 2559373 2560581 R hypothetical protein complement(2559373..2560581) Agrobacterium vitis S4 7388635 YP_002550224.1 CDS Avi_3085 NC_011989.1 2560634 2561389 R Site-specific DNA methylase complement(2560634..2561389) Agrobacterium vitis S4 7388636 YP_002550225.1 CDS cspA NC_011989.1 2561570 2561773 R cold shock protein complement(2561570..2561773) Agrobacterium vitis S4 7388637 YP_002550226.1 CDS glf NC_011989.1 2562124 2563227 R UDP-galactopyranose mutase complement(2562124..2563227) Agrobacterium vitis S4 7388638 YP_002550227.1 CDS ina NC_011989.1 2563810 2565369 D ice nucleation protein 2563810..2565369 Agrobacterium vitis S4 7388639 YP_002550228.1 CDS Avi_3091 NC_011989.1 2565675 2567717 D hypothetical protein 2565675..2567717 Agrobacterium vitis S4 7388640 YP_002550229.1 CDS Avi_3092 NC_011989.1 2567867 2569105 R peptidase complement(2567867..2569105) Agrobacterium vitis S4 7388641 YP_002550230.1 CDS Avi_3093 NC_011989.1 2569454 2569900 R hypothetical protein complement(2569454..2569900) Agrobacterium vitis S4 7388642 YP_002550231.1 CDS Avi_3095 NC_011989.1 2570142 2570522 R hypothetical protein complement(2570142..2570522) Agrobacterium vitis S4 7388643 YP_002550232.1 CDS Avi_3097 NC_011989.1 2570619 2572154 R GGDEF family protein complement(2570619..2572154) Agrobacterium vitis S4 7388644 YP_002550233.1 CDS Avi_3098 NC_011989.1 2572154 2572705 R Guanylate cyclase-related protein complement(2572154..2572705) Agrobacterium vitis S4 7388645 YP_002550234.1 CDS oriC NC_011989.1 2572825 2573730 R LysR family transcriptional regulator complement(2572825..2573730) Agrobacterium vitis S4 7388646 YP_002550235.1 CDS lysE NC_011989.1 2573817 2574422 D LysE family transporter 2573817..2574422 Agrobacterium vitis S4 7388647 YP_002550236.1 CDS Avi_3101 NC_011989.1 2574426 2575523 R hypothetical protein complement(2574426..2575523) Agrobacterium vitis S4 7388648 YP_002550237.1 CDS celE NC_011989.1 2575666 2576829 D cellulose synthesis protein 2575666..2576829 Agrobacterium vitis S4 7388649 YP_002550238.1 CDS Avi_3103 NC_011989.1 2576878 2577855 D hypothetical protein 2576878..2577855 Agrobacterium vitis S4 7388650 YP_002550239.1 CDS rpoD NC_011989.1 2577925 2579970 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(2577925..2579970) Agrobacterium vitis S4 7388651 YP_002550240.1 CDS dnaG NC_011989.1 2580657 2582693 R synthesizes RNA primers at the replication forks; DNA primase complement(2580657..2582693) Agrobacterium vitis S4 7388652 YP_002550241.1 CDS mnhA NC_011989.1 2582996 2583574 D Na+/H+ antiporter 2582996..2583574 Agrobacterium vitis S4 7388653 YP_002550242.1 CDS bioB NC_011989.1 2583571 2584557 D biotin synthase 2583571..2584557 Agrobacterium vitis S4 7388654 YP_002550243.1 CDS Avi_3109 NC_011989.1 2584650 2585105 R hypothetical protein complement(2584650..2585105) Agrobacterium vitis S4 7388655 YP_002550244.1 CDS carA NC_011989.1 2585443 2586663 D catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit 2585443..2586663 Agrobacterium vitis S4 7388656 YP_002550245.1 CDS Avi_3112 NC_011989.1 2586760 2588157 R multidrug efflux protein complement(2586760..2588157) Agrobacterium vitis S4 7388657 YP_002550246.1 CDS Avi_3113 NC_011989.1 2588417 2589319 R LysR family transcriptional regulator complement(2588417..2589319) Agrobacterium vitis S4 7388658 YP_002550247.1 CDS Avi_3114 NC_011989.1 2589423 2590412 D aldo-keto reductase 2589423..2590412 Agrobacterium vitis S4 7388659 YP_002550248.1 CDS Avi_3115 NC_011989.1 2590419 2591318 R hypothetical protein complement(2590419..2591318) Agrobacterium vitis S4 7388660 YP_002550249.1 CDS Avi_3116 NC_011989.1 2591481 2592164 R glutathione S-transferase complement(2591481..2592164) Agrobacterium vitis S4 7388661 YP_002550250.1 CDS Avi_3120 NC_011989.1 2592717 2593451 R hypothetical protein complement(2592717..2593451) Agrobacterium vitis S4 7388662 YP_002550251.1 CDS carB NC_011989.1 2593840 2597214 D four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit 2593840..2597214 Agrobacterium vitis S4 7388663 YP_002550252.1 CDS Avi_3124 NC_011989.1 2597362 2598648 D hypothetical protein 2597362..2598648 Agrobacterium vitis S4 7388664 YP_002550253.1 CDS greA NC_011989.1 2599096 2599572 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA 2599096..2599572 Agrobacterium vitis S4 7388665 YP_002550254.1 CDS lpcC NC_011989.1 2599653 2600756 D lipopolysaccharide core biosynthesis mannosyltransferase 2599653..2600756 Agrobacterium vitis S4 7388666 YP_002550255.1 CDS Avi_3129 NC_011989.1 2600767 2601594 D glycosyl transferase 2600767..2601594 Agrobacterium vitis S4 7388667 YP_002550256.1 CDS Avi_3131 NC_011989.1 2601581 2602387 D hypothetical protein 2601581..2602387 Agrobacterium vitis S4 7388668 YP_002550257.1 CDS Avi_3134 NC_011989.1 2602690 2603619 D hypothetical protein 2602690..2603619 Agrobacterium vitis S4 7388669 YP_002550258.1 CDS Avi_3135 NC_011989.1 2603850 2604509 D hypothetical protein 2603850..2604509 Agrobacterium vitis S4 7388670 YP_002550259.1 CDS Avi_3137 NC_011989.1 2604704 2605696 D hypothetical protein 2604704..2605696 Agrobacterium vitis S4 7386494 YP_002550260.1 CDS lrp NC_011989.1 2605754 2606221 R transcriptional regulator AsnC family complement(2605754..2606221) Agrobacterium vitis S4 7388092 YP_002550261.1 CDS trxB NC_011989.1 2606412 2607428 D thioredoxin-disulfide reductase 2606412..2607428 Agrobacterium vitis S4 7388093 YP_002550262.1 CDS Avi_3141 NC_011989.1 2607436 2608350 D LysR family transcriptional regulator 2607436..2608350 Agrobacterium vitis S4 7388094 YP_002550263.1 CDS Avi_3142 NC_011989.1 2608951 2609238 D transcriptional regulator ArsR family 2608951..2609238 Agrobacterium vitis S4 7387985 YP_002550264.1 CDS Avi_3143 NC_011989.1 2609284 2610399 D oxidoreductase 2609284..2610399 Agrobacterium vitis S4 7388096 YP_002550265.1 CDS Avi_3144 NC_011989.1 2610450 2611562 R hypothetical protein complement(2610450..2611562) Agrobacterium vitis S4 7388097 YP_002550266.1 CDS Avi_3145 NC_011989.1 2611622 2612524 D LysR family transcriptional regulator 2611622..2612524 Agrobacterium vitis S4 7388098 YP_002550267.1 CDS Avi_3146 NC_011989.1 2612617 2612880 R hypothetical protein complement(2612617..2612880) Agrobacterium vitis S4 7388099 YP_002550268.1 CDS chaA NC_011989.1 2613239 2614396 D Ca2+/H+ antiporter 2613239..2614396 Agrobacterium vitis S4 7388100 YP_002550269.1 CDS Avi_3149 NC_011989.1 2614595 2615800 D hypothetical protein 2614595..2615800 Agrobacterium vitis S4 7388101 YP_002550270.1 CDS aatA NC_011989.1 2615881 2617083 R catalyzes the formation of oxalozcetate and L-glutamate from L-aspartate and 2-oxoglutarate; aspartate aminotransferase complement(2615881..2617083) Agrobacterium vitis S4 7388102 YP_002550271.1 CDS Avi_3152 NC_011989.1 2617245 2617835 D hypothetical protein 2617245..2617835 Agrobacterium vitis S4 7388103 YP_002550272.1 CDS Avi_3154 NC_011989.1 2618003 2618893 D permease 2618003..2618893 Agrobacterium vitis S4 7388104 YP_002550273.1 CDS cspA NC_011989.1 2619353 2619568 D cold shock protein 2619353..2619568 Agrobacterium vitis S4 7388105 YP_002550274.1 CDS Avi_3159 NC_011989.1 2619647 2620294 R hydrolase complement(2619647..2620294) Agrobacterium vitis S4 7388106 YP_002550275.1 CDS petP NC_011989.1 2621036 2621500 D transcriptional regulator MarR family 2621036..2621500 Agrobacterium vitis S4 7388107 YP_002550276.1 CDS petR NC_011989.1 2621506 2622204 D two component response regulator 2621506..2622204 Agrobacterium vitis S4 7388108 YP_002550277.1 CDS envZ NC_011989.1 2622390 2623712 D two component sensor kinase 2622390..2623712 Agrobacterium vitis S4 7388109 YP_002550278.1 CDS csaA NC_011989.1 2623751 2624110 R secretion chaperone complement(2623751..2624110) Agrobacterium vitis S4 7388110 YP_002550279.1 CDS proC NC_011989.1 2624107 2624928 R catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase complement(2624107..2624928) Agrobacterium vitis S4 7388111 YP_002550280.1 CDS Avi_3169 NC_011989.1 2624931 2625431 R hypothetical protein complement(2624931..2625431) Agrobacterium vitis S4 7388112 YP_002550281.1 CDS Avi_3170 NC_011989.1 2625916 2626191 R hypothetical protein complement(2625916..2626191) Agrobacterium vitis S4 7388113 YP_002550282.1 CDS lgt NC_011989.1 2626523 2627386 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 2626523..2627386 Agrobacterium vitis S4 7388114 YP_002550283.1 CDS Avi_3172 NC_011989.1 2627383 2628516 D hypothetical protein 2627383..2628516 Agrobacterium vitis S4 7388115 YP_002550284.1 CDS Avi_3173 NC_011989.1 2628678 2629508 D hypothetical protein 2628678..2629508 Agrobacterium vitis S4 7388116 YP_002550285.1 CDS pepQ NC_011989.1 2629505 2630659 D proline dipeptidase 2629505..2630659 Agrobacterium vitis S4 7388117 YP_002550286.1 CDS Avi_3175 NC_011989.1 2630800 2631732 D hypothetical protein 2630800..2631732 Agrobacterium vitis S4 7388118 YP_002550287.1 CDS prsA NC_011989.1 2632801 2633733 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 2632801..2633733 Agrobacterium vitis S4 7388119 YP_002550288.1 CDS Avi_3178 NC_011989.1 2634104 2634937 D hypothetical protein 2634104..2634937 Agrobacterium vitis S4 7388120 YP_002550289.1 CDS Avi_3179 NC_011989.1 2634964 2635341 R hypothetical protein complement(2634964..2635341) Agrobacterium vitis S4 7388121 YP_002550290.1 CDS aldA NC_011989.1 2635624 2637138 R aldehyde dehydrogenase complement(2635624..2637138) Agrobacterium vitis S4 7388122 YP_002550291.1 CDS acoR NC_011989.1 2637324 2638280 R transcriptional regulator complement(2637324..2638280) Agrobacterium vitis S4 7388123 YP_002550292.1 CDS rplY NC_011989.1 2638648 2639250 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 2638648..2639250 Agrobacterium vitis S4 7388124 YP_002550293.1 CDS Avi_3187 NC_011989.1 2639645 2642047 D GGDEF family protein 2639645..2642047 Agrobacterium vitis S4 7388125 YP_002550294.1 CDS Avi_3188 NC_011989.1 2642170 2642856 D amino acid ABC transporter substrate-binding protein 2642170..2642856 Agrobacterium vitis S4 7388126 YP_002550295.1 CDS pth NC_011989.1 2642934 2643638 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 2642934..2643638 Agrobacterium vitis S4 7388127 YP_002550296.1 CDS Avi_3191 NC_011989.1 2643642 2644205 D hypothetical protein 2643642..2644205 Agrobacterium vitis S4 7388128 YP_002550297.1 CDS Avi_3192 NC_011989.1 2644220 2644669 D acetyltransferase 2644220..2644669 Agrobacterium vitis S4 7388129 YP_002550298.1 CDS clpS NC_011989.1 2644673 2644984 R involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor complement(2644673..2644984) Agrobacterium vitis S4 7388130 YP_002550299.1 CDS Avi_3194 NC_011989.1 2645139 2646242 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 2645139..2646242 Agrobacterium vitis S4 7388131 YP_002550300.1 CDS Avi_3195 NC_011989.1 2646397 2647893 D hypothetical protein 2646397..2647893 Agrobacterium vitis S4 7388132 YP_002550301.1 CDS Avi_3196 NC_011989.1 2647942 2648412 D hypothetical protein 2647942..2648412 Agrobacterium vitis S4 7388133 YP_002550302.1 CDS Avi_3197 NC_011989.1 2648409 2648894 D hypothetical protein 2648409..2648894 Agrobacterium vitis S4 7388134 YP_002550303.1 CDS Avi_3198 NC_011989.1 2648881 2649360 D glutathione peroxidase 2648881..2649360 Agrobacterium vitis S4 7388135 YP_002550304.1 CDS Avi_3200 NC_011989.1 2649656 2650561 R hypothetical protein complement(2649656..2650561) Agrobacterium vitis S4 7388136 YP_002550305.1 CDS apt NC_011989.1 2650593 2651066 R adenine phosphoribosyltransferase complement(2650593..2651066) Agrobacterium vitis S4 7388137 YP_002550306.1 CDS fbcC NC_011989.1 2651333 2652187 R cytochrome c1 complement(2651333..2652187) Agrobacterium vitis S4 7388138 YP_002550307.1 CDS fbcB NC_011989.1 2652213 2653481 R ubiquinol-cytochrome c reductase cytochrome b subunit complement(2652213..2653481) Agrobacterium vitis S4 7388139 YP_002550308.1 CDS petA NC_011989.1 2653495 2654148 R ubiquinol-cytochrome c reductase iron-sulfur subunit complement(2653495..2654148) Agrobacterium vitis S4 7388140 YP_002550309.1 CDS Avi_3207 NC_011989.1 2654780 2655721 D hypothetical protein 2654780..2655721 Agrobacterium vitis S4 7388141 YP_002550310.1 CDS Avi_3208 NC_011989.1 2656145 2658022 R ABC transporter ATPase complement(2656145..2658022) Agrobacterium vitis S4 7388142 YP_002550311.1 CDS Avi_3210 NC_011989.1 2658207 2658659 D aminoglycoside N6'-acetyltransferase 2658207..2658659 Agrobacterium vitis S4 7388143 YP_002550312.1 CDS Avi_3213 NC_011989.1 2658803 2660662 R ABC transporter ATPase complement(2658803..2660662) Agrobacterium vitis S4 7388144 YP_002550313.1 CDS Avi_3216 NC_011989.1 2661130 2661615 D tRNA/rRNA methyltransferase 2661130..2661615 Agrobacterium vitis S4 7388145 YP_002550314.1 CDS Avi_3218 NC_011989.1 2661855 2663261 D OmpA family protein 2661855..2663261 Agrobacterium vitis S4 7388146 YP_002550315.1 CDS flaA NC_011989.1 2663298 2664257 R flagella associated protein complement(2663298..2664257) Agrobacterium vitis S4 7388147 YP_002550316.1 CDS Avi_3220 NC_011989.1 2664444 2664722 R hypothetical protein complement(2664444..2664722) Agrobacterium vitis S4 7388148 YP_002550317.1 CDS hemF NC_011989.1 2664895 2665809 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2664895..2665809 Agrobacterium vitis S4 7388149 YP_002550318.1 CDS Avi_3224 NC_011989.1 2665988 2666293 D hypothetical protein 2665988..2666293 Agrobacterium vitis S4 7388150 YP_002550319.1 CDS papS NC_011989.1 2666727 2667989 R poly(A) polymerase complement(2666727..2667989) Agrobacterium vitis S4 7388151 YP_002550320.1 CDS Avi_3227 NC_011989.1 2667986 2668642 R NTP pyrophosphohydrolase MutT family complement(2667986..2668642) Agrobacterium vitis S4 7388152 YP_002550321.1 CDS Avi_3228 NC_011989.1 2668639 2669211 R hypothetical protein complement(2668639..2669211) Agrobacterium vitis S4 7388153 YP_002550322.1 CDS moxR NC_011989.1 2669463 2670491 D MoxR family protein 2669463..2670491 Agrobacterium vitis S4 7388154 YP_002550323.1 CDS Avi_3231 NC_011989.1 2670507 2671469 D hypothetical protein 2670507..2671469 Agrobacterium vitis S4 7388155 YP_002550324.1 CDS Avi_3232 NC_011989.1 2671469 2674297 D hypothetical protein 2671469..2674297 Agrobacterium vitis S4 7388156 YP_002550325.1 CDS Avi_3233 NC_011989.1 2674299 2676368 D hypothetical protein 2674299..2676368 Agrobacterium vitis S4 7388157 YP_002550326.1 CDS Avi_3234 NC_011989.1 2676368 2676874 D polyamine ABC transporter permease 2676368..2676874 Agrobacterium vitis S4 7388158 YP_002550327.1 CDS Avi_3235 NC_011989.1 2676883 2677311 D acetyltransferase 2676883..2677311 Agrobacterium vitis S4 7388159 YP_002550328.1 CDS Avi_3236 NC_011989.1 2677343 2677759 D acetyltransferase 2677343..2677759 Agrobacterium vitis S4 7388160 YP_002550329.1 CDS Avi_3238 NC_011989.1 2677800 2678633 D metallo-beta-lactamase 2677800..2678633 Agrobacterium vitis S4 7388161 YP_002550330.1 CDS Avi_3239 NC_011989.1 2678746 2679321 R acetyltransferase complement(2678746..2679321) Agrobacterium vitis S4 7388162 YP_002550331.1 CDS Avi_3241 NC_011989.1 2679626 2680594 D hypothetical protein 2679626..2680594 Agrobacterium vitis S4 7388163 YP_002550332.1 CDS Avi_3242 NC_011989.1 2680576 2680974 R hypothetical protein complement(2680576..2680974) Agrobacterium vitis S4 7388164 YP_002550333.1 CDS Avi_3243 NC_011989.1 2681119 2682027 D hypothetical protein 2681119..2682027 Agrobacterium vitis S4 7388165 YP_002550334.1 CDS clpP NC_011989.1 2682260 2682841 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2682260..2682841 Agrobacterium vitis S4 7388166 YP_002550335.1 CDS Avi_3247 NC_011989.1 2683015 2684199 D benzoate transport protein 2683015..2684199 Agrobacterium vitis S4 7388167 YP_002550336.1 CDS leuA NC_011989.1 2684548 2686254 D 2-isopropylmalate synthase 2684548..2686254 Agrobacterium vitis S4 7388168 YP_002550337.1 CDS Avi_9916 NC_011989.1 2686729 2687340 R hypothetical protein complement(2686729..2687340) Agrobacterium vitis S4 7388169 YP_002550338.1 CDS Avi_3250 NC_011989.1 2687449 2687910 R transcriptional regulator AsnC family complement(2687449..2687910) Agrobacterium vitis S4 7387972 YP_002550339.1 CDS Avi_3251 NC_011989.1 2688003 2689124 D dehydrogenase 2688003..2689124 Agrobacterium vitis S4 7388170 YP_002550340.1 CDS Avi_3252 NC_011989.1 2689239 2689679 D hypothetical protein 2689239..2689679 Agrobacterium vitis S4 7388171 YP_002550341.1 CDS vgrG NC_011989.1 2689885 2692017 D vgrG protein 2689885..2692017 Agrobacterium vitis S4 7388172 YP_002550342.1 CDS Avi_3255 NC_011989.1 2692028 2692864 D hypothetical protein 2692028..2692864 Agrobacterium vitis S4 7388173 YP_002550343.1 CDS Avi_3256 NC_011989.1 2692871 2693338 D hypothetical protein 2692871..2693338 Agrobacterium vitis S4 7387429 YP_002550344.1 CDS Avi_3257 NC_011989.1 2693463 2693768 D phospholipase 2693463..2693768 Agrobacterium vitis S4 7387430 YP_002550345.1 CDS Avi_3258 NC_011989.1 2693922 2694692 D hypothetical protein 2693922..2694692 Agrobacterium vitis S4 7387431 YP_002550346.1 CDS trpEG NC_011989.1 2694914 2697103 D trpE(G); catalyzes the formation of anthranilate from chorismate and glutamine; contains both component I and II; anthranilate synthase 2694914..2697103 Agrobacterium vitis S4 7387432 YP_002550347.1 CDS Avi_3260 NC_011989.1 2697100 2697606 D acetyltransferase 2697100..2697606 Agrobacterium vitis S4 7387433 YP_002550348.1 CDS Avi_3261 NC_011989.1 2697806 2698723 D cation efflux system protein 2697806..2698723 Agrobacterium vitis S4 7387434 YP_002550349.1 CDS Avi_3262 NC_011989.1 2698720 2699184 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 2698720..2699184 Agrobacterium vitis S4 7387435 YP_002550350.1 CDS Avi_3264 NC_011989.1 2699311 2699754 D GTP cyclohydrolase I 2699311..2699754 Agrobacterium vitis S4 7387436 YP_002550351.1 CDS Avi_3266 NC_011989.1 2700207 2701037 R hypothetical protein complement(2700207..2701037) Agrobacterium vitis S4 7387437 YP_002550352.1 CDS ureJ NC_011989.1 2701194 2701772 R urease accessory protein complement(2701194..2701772) Agrobacterium vitis S4 7387438 YP_002550353.1 CDS Avi_3269 NC_011989.1 2701972 2703423 D hypothetical protein 2701972..2703423 Agrobacterium vitis S4 7387439 YP_002550354.1 CDS Avi_3270 NC_011989.1 2703568 2704527 D hypothetical protein 2703568..2704527 Agrobacterium vitis S4 7387440 YP_002550355.1 CDS Avi_3271 NC_011989.1 2704543 2706729 R outer membrane heme receptor complement(2704543..2706729) Agrobacterium vitis S4 7387441 YP_002550356.1 CDS Avi_3272 NC_011989.1 2706953 2708620 R catalyzes the formation of 10-formyltetrahydrofolate from formate and tetrahydrofolate; formate--tetrahydrofolate ligase complement(2706953..2708620) Agrobacterium vitis S4 7387442 YP_002550357.1 CDS avxR NC_011989.1 2709484 2710209 D transcriptional regulator LuxR family 2709484..2710209 Agrobacterium vitis S4 7387443 YP_002550358.1 CDS Avi_3275 NC_011989.1 2710249 2710698 D hypothetical protein 2710249..2710698 Agrobacterium vitis S4 7387444 YP_002550359.1 CDS Avi_3276 NC_011989.1 2710737 2711846 R hypothetical protein complement(2710737..2711846) Agrobacterium vitis S4 7387445 YP_002550360.1 CDS tdk NC_011989.1 2712038 2712616 R catalyzes the formation of thymidine 5'-phosphate from thymidine; thymidine kinase complement(2712038..2712616) Agrobacterium vitis S4 7387446 YP_002550361.1 CDS Avi_3281 NC_011989.1 2713065 2714066 D ABC transporter substrate binding protein (proline/glycine betaine) 2713065..2714066 Agrobacterium vitis S4 7387447 YP_002550362.1 CDS Avi_3282 NC_011989.1 2714173 2715018 D glycine/betaine ABC transporter permease 2714173..2715018 Agrobacterium vitis S4 7387448 YP_002550363.1 CDS Avi_3283 NC_011989.1 2715015 2716058 D ABC transporter nucleotide binding/ATPase (proline/glycine betaine) 2715015..2716058 Agrobacterium vitis S4 7387449 YP_002550364.1 CDS Avi_3284 NC_011989.1 2716250 2716981 D hypothetical protein 2716250..2716981 Agrobacterium vitis S4 7387450 YP_002550365.1 CDS nolR NC_011989.1 2717119 2717436 D transcriptional regulator ArsR family 2717119..2717436 Agrobacterium vitis S4 7387451 YP_002550366.1 CDS bioA NC_011989.1 2718297 2719634 D catalyze the conversion of beta amino acids to the corresponding beta keto acid with pyruvate as the amine acceptor; omega amino acid--pyruvate transaminase 2718297..2719634 Agrobacterium vitis S4 7387452 YP_002550367.1 CDS Avi_3290 NC_011989.1 2720786 2721745 D hypothetical protein 2720786..2721745 Agrobacterium vitis S4 7387455 YP_002550368.1 CDS braC NC_011989.1 2722539 2723645 D ABC transporter substrate binding protein (branched chain amino acid) 2722539..2723645 Agrobacterium vitis S4 7387456 YP_002550369.1 CDS Avi_3295 NC_011989.1 2723929 2724798 D Aldose 1-epimerase 2723929..2724798 Agrobacterium vitis S4 7387457 YP_002550370.1 CDS Avi_3296 NC_011989.1 2724795 2725457 D chloramphenicaol phosphotransferase 2724795..2725457 Agrobacterium vitis S4 7387458 YP_002550371.1 CDS ade NC_011989.1 2725477 2727171 D adenine deaminase 2725477..2727171 Agrobacterium vitis S4 7387459 YP_002550372.1 CDS Avi_3298 NC_011989.1 2727226 2727489 D hypothetical protein 2727226..2727489 Agrobacterium vitis S4 7387460 YP_002550373.1 CDS Avi_3299 NC_011989.1 2727493 2727759 D addiction module toxin Txe/YoeB family 2727493..2727759 Agrobacterium vitis S4 7387461 YP_002550374.1 CDS aglA NC_011989.1 2727767 2729434 R alpha-glucosidase complement(2727767..2729434) Agrobacterium vitis S4 7387462 YP_002550375.1 CDS Avi_3301 NC_011989.1 2729711 2730778 D glycosyltransferase 2729711..2730778 Agrobacterium vitis S4 7387463 YP_002550376.1 CDS engA NC_011989.1 2730798 2732222 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(2730798..2732222) Agrobacterium vitis S4 7387464 YP_002550377.1 CDS Avi_3303 NC_011989.1 2732375 2733046 R hypothetical protein complement(2732375..2733046) Agrobacterium vitis S4 7387465 YP_002550378.1 CDS Avi_3305 NC_011989.1 2733311 2733916 R hypothetical protein complement(2733311..2733916) Agrobacterium vitis S4 7387466 YP_002550379.1 CDS Avi_3306 NC_011989.1 2734027 2735136 D hypothetical protein 2734027..2735136 Agrobacterium vitis S4 7387467 YP_002550380.1 CDS Avi_3309 NC_011989.1 2735285 2736535 R in Escherichia coli SbmA is involved in uptake of microcin J25; functions along with FhuA, TonB, and ExbB/D in this capacity; in Sinorhizobium meliloti, BacA is essential and required for symbiosis; defects appear to affect the cell envelope; transport protein complement(2735285..2736535) Agrobacterium vitis S4 7387468 YP_002550381.1 CDS Avi_3310 NC_011989.1 2736705 2737910 R MFS permease complement(2736705..2737910) Agrobacterium vitis S4 7387469 YP_002550382.1 CDS Avi_3311 NC_011989.1 2738055 2738339 D hypothetical protein 2738055..2738339 Agrobacterium vitis S4 7387470 YP_002550383.1 CDS map NC_011989.1 2738388 2739137 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mnin Bacillus subtilis the protein in this cluster is considered non-essential; methionine aminopeptidase complement(2738388..2739137) Agrobacterium vitis S4 7387471 YP_002550384.1 CDS Avi_3314 NC_011989.1 2739177 2740235 R monooxygenase complement(2739177..2740235) Agrobacterium vitis S4 7387472 YP_002550385.1 CDS glpK NC_011989.1 2740546 2742039 R glycerol kinase complement(2740546..2742039) Agrobacterium vitis S4 7387473 YP_002550386.1 CDS bdhA NC_011989.1 2742307 2743077 D d-beta-hydroxybutyrate dehydrogenase 2742307..2743077 Agrobacterium vitis S4 7387474 YP_002550387.1 CDS xdhA NC_011989.1 2743108 2744580 D xanthine dehydrogenase 2743108..2744580 Agrobacterium vitis S4 7387475 YP_002550388.1 CDS xdhB NC_011989.1 2744833 2747178 D xanthine dehydrogenase molybdopterin binding subunit 2744833..2747178 Agrobacterium vitis S4 7387476 YP_002550389.1 CDS xdhC NC_011989.1 2747175 2747978 D xanthine dehydrogenase accessory protein XdhC 2747175..2747978 Agrobacterium vitis S4 7387477 YP_002550390.1 CDS Avi_3323 NC_011989.1 2748043 2749779 D TPR repeat protein 2748043..2749779 Agrobacterium vitis S4 7387478 YP_002550391.1 CDS Avi_3324 NC_011989.1 2750125 2751042 D LysR family transcriptional regulator 2750125..2751042 Agrobacterium vitis S4 7387479 YP_002550392.1 CDS Avi_3325 NC_011989.1 2751167 2752399 D hypothetical protein 2751167..2752399 Agrobacterium vitis S4 7387480 YP_002550393.1 CDS guaD NC_011989.1 2752399 2753706 D Catalyzes the deamination of guanine; guanine deaminase 2752399..2753706 Agrobacterium vitis S4 7387481 YP_002550394.1 CDS Avi_3327 NC_011989.1 2753943 2754854 D ABC transporter substrate-binding protein 2753943..2754854 Agrobacterium vitis S4 7387482 YP_002550395.1 CDS Avi_3328 NC_011989.1 2754948 2755766 D ABC transporter ATPase 2754948..2755766 Agrobacterium vitis S4 7387483 YP_002550396.1 CDS Avi_3330 NC_011989.1 2755780 2756667 D ABC transporter permease 2755780..2756667 Agrobacterium vitis S4 7387484 YP_002550397.1 CDS argG NC_011989.1 2756922 2758151 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(2756922..2758151) Agrobacterium vitis S4 7387485 YP_002550398.1 CDS lrp NC_011989.1 2758278 2758745 D transcriptional regulator AsnC family 2758278..2758745 Agrobacterium vitis S4 7387486 YP_002550399.1 CDS Avi_3334 NC_011989.1 2758851 2759075 D hypothetical protein 2758851..2759075 Agrobacterium vitis S4 7387487 YP_002550400.1 CDS Avi_3335 NC_011989.1 2759072 2759395 D hypothetical protein 2759072..2759395 Agrobacterium vitis S4 7387488 YP_002550401.1 CDS tctE NC_011989.1 2759432 2760853 R two component sensor kinase complement(2759432..2760853) Agrobacterium vitis S4 7387489 YP_002550402.1 CDS tctD NC_011989.1 2760869 2761534 R two component response regulator complement(2760869..2761534) Agrobacterium vitis S4 7387490 YP_002550403.1 CDS Avi_3339 NC_011989.1 2761634 2762380 R hypothetical protein complement(2761634..2762380) Agrobacterium vitis S4 7387491 YP_002550404.1 CDS pucM NC_011989.1 2762384 2762740 R hydroxyisourate hydrolase complement(2762384..2762740) Agrobacterium vitis S4 7387492 YP_002550405.1 CDS allA NC_011989.1 2762737 2763246 R catalyzes the formation of glyoxylate from (S)-ureidoglycolate; ureidoglycolate hydrolase complement(2762737..2763246) Agrobacterium vitis S4 7387493 YP_002550406.1 CDS Avi_3342 NC_011989.1 2763434 2767438 R peptide synthetase complement(2763434..2767438) Agrobacterium vitis S4 7387494 YP_002550407.1 CDS Avi_3343 NC_011989.1 2767575 2767811 R hypothetical protein complement(2767575..2767811) Agrobacterium vitis S4 7387495 YP_002550408.1 CDS glnA NC_011989.1 2768631 2769665 R glutamine synthetase complement(2768631..2769665) Agrobacterium vitis S4 7387496 YP_002550409.1 CDS Avi_3346 NC_011989.1 2770014 2770244 D glutamine synthetase 2770014..2770244 Agrobacterium vitis S4 7387497 YP_002550410.1 CDS Avi_3347 NC_011989.1 2770452 2770961 R hypothetical protein complement(2770452..2770961) Agrobacterium vitis S4 7387498 YP_002550411.1 CDS adh NC_011989.1 2771186 2772232 D NADP-dependent alcohol dehydrogenase 2771186..2772232 Agrobacterium vitis S4 7387499 YP_002550412.1 CDS Avi_3350 NC_011989.1 2772365 2772889 R hypothetical protein complement(2772365..2772889) Agrobacterium vitis S4 7387500 YP_002550413.1 CDS Avi_3352 NC_011989.1 2773073 2773240 R hypothetical protein complement(2773073..2773240) Agrobacterium vitis S4 7387501 YP_002550414.1 CDS Avi_3353 NC_011989.1 2773831 2775711 D GGDEF family protein 2773831..2775711 Agrobacterium vitis S4 7387502 YP_002550415.1 CDS Avi_3355 NC_011989.1 2775817 2776737 R hypothetical protein complement(2775817..2776737) Agrobacterium vitis S4 7387503 YP_002550416.1 CDS Avi_3356 NC_011989.1 2776819 2777526 R hypothetical protein complement(2776819..2777526) Agrobacterium vitis S4 7387504 YP_002550417.1 CDS Avi_3358 NC_011989.1 2777928 2779181 R oxidoreductase complement(2777928..2779181) Agrobacterium vitis S4 7387505 YP_002550418.1 CDS Avi_3359 NC_011989.1 2779264 2779923 D hypothetical protein 2779264..2779923 Agrobacterium vitis S4 7387506 YP_002550419.1 CDS Avi_3360 NC_011989.1 2779962 2783810 R two component sensor kinase/response regulator hybrid complement(2779962..2783810) Agrobacterium vitis S4 7387507 YP_002550420.1 CDS Avi_3361 NC_011989.1 2784185 2784508 D hypothetical protein 2784185..2784508 Agrobacterium vitis S4 7387508 YP_002550421.1 CDS rhlE NC_011989.1 2784817 2786271 D ATP-dependent RNA helicase 2784817..2786271 Agrobacterium vitis S4 7387509 YP_002550422.1 CDS Avi_3364 NC_011989.1 2786442 2788658 R hypothetical protein complement(2786442..2788658) Agrobacterium vitis S4 7387510 YP_002550423.1 CDS Avi_3366 NC_011989.1 2788821 2789996 R Glycine/serine hydroxymethyltransferase complement(2788821..2789996) Agrobacterium vitis S4 7386995 YP_002550424.1 CDS Avi_3369 NC_011989.1 2790469 2790804 R hypothetical protein complement(2790469..2790804) Agrobacterium vitis S4 7386996 YP_002550425.1 CDS Avi_3370 NC_011989.1 2790949 2791548 D NAD(P)H-flavin oxidoreductase 2790949..2791548 Agrobacterium vitis S4 7386997 YP_002550426.1 CDS Avi_3371 NC_011989.1 2791568 2791969 D hypothetical protein 2791568..2791969 Agrobacterium vitis S4 7386998 YP_002550427.1 CDS dinP NC_011989.1 2792636 2793793 D involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV 2792636..2793793 Agrobacterium vitis S4 7386999 YP_002550428.1 CDS Avi_3375 NC_011989.1 2794154 2794300 R hypothetical protein complement(2794154..2794300) Agrobacterium vitis S4 7387000 YP_002550429.1 CDS Avi_3376 NC_011989.1 2794472 2795452 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(2794472..2795452) Agrobacterium vitis S4 7387001 YP_002550430.1 CDS Avi_3377 NC_011989.1 2795811 2798168 D ornithine decarboxylase 2795811..2798168 Agrobacterium vitis S4 7387002 YP_002550431.1 CDS Avi_3378 NC_011989.1 2798209 2798751 D acetyltransferase 2798209..2798751 Agrobacterium vitis S4 7387003 YP_002550432.1 CDS Avi_3380 NC_011989.1 2799056 2799289 R hypothetical protein complement(2799056..2799289) Agrobacterium vitis S4 7387004 YP_002550433.1 CDS Avi_3381 NC_011989.1 2799426 2800466 R hypothetical protein complement(2799426..2800466) Agrobacterium vitis S4 7387005 YP_002550434.1 CDS Avi_3382 NC_011989.1 2800542 2801516 R hypothetical protein complement(2800542..2801516) Agrobacterium vitis S4 7387006 YP_002550435.1 CDS Avi_3383 NC_011989.1 2801580 2802587 R hypothetical protein complement(2801580..2802587) Agrobacterium vitis S4 7387007 YP_002550436.1 CDS Avi_3385 NC_011989.1 2802599 2803573 R hypothetical protein complement(2802599..2803573) Agrobacterium vitis S4 7387008 YP_002550437.1 CDS Avi_3386 NC_011989.1 2803578 2804633 R beta-ketoacyl synthase domain-containing protein complement(2803578..2804633) Agrobacterium vitis S4 7387009 YP_002550438.1 CDS Avi_3387 NC_011989.1 2804630 2805646 R hypothetical protein complement(2804630..2805646) Agrobacterium vitis S4 7387010 YP_002550439.1 CDS Avi_3388 NC_011989.1 2805657 2805965 R hypothetical protein complement(2805657..2805965) Agrobacterium vitis S4 7387011 YP_002550440.1 CDS Avi_3389 NC_011989.1 2806093 2807364 R hypothetical protein complement(2806093..2807364) Agrobacterium vitis S4 7387012 YP_002550441.1 CDS Avi_3390 NC_011989.1 2808108 2808746 R hypothetical protein complement(2808108..2808746) Agrobacterium vitis S4 7387989 YP_002550442.1 CDS Avi_3391 NC_011989.1 2808748 2810013 R phage prohead protease HK97 family complement(2808748..2810013) Agrobacterium vitis S4 7387014 YP_002550443.1 CDS vgrG NC_011989.1 2810028 2812115 R vgrG protein complement(2810028..2812115) Agrobacterium vitis S4 7387015 YP_002550444.1 CDS Avi_3394 NC_011989.1 2812606 2813421 D divalent cation transporter 2812606..2813421 Agrobacterium vitis S4 7387016 YP_002550445.1 CDS Avi_3398 NC_011989.1 2813803 2814414 R hypothetical protein complement(2813803..2814414) Agrobacterium vitis S4 7387017 YP_002550446.1 CDS Avi_3401 NC_011989.1 2814590 2815048 R hypothetical protein complement(2814590..2815048) Agrobacterium vitis S4 7387018 YP_002550447.1 CDS istB NC_011989.1 2815499 2816293 R IS21 family transposase complement(2815499..2816293) Agrobacterium vitis S4 7387019 YP_002550448.1 CDS istA NC_011989.1 2816283 2817800 R IS21 family transposase complement(2816283..2817800) Agrobacterium vitis S4 7387020 YP_002550449.1 CDS Avi_9917 NC_011989.1 2817856 2818008 R hypothetical protein complement(2817856..2818008) Agrobacterium vitis S4 7387021 YP_002550450.1 CDS Avi_3404 NC_011989.1 2818905 2820044 D hypothetical protein 2818905..2820044 Agrobacterium vitis S4 7387973 YP_002550451.1 CDS Avi_3406 NC_011989.1 2820659 2820892 D hypothetical protein 2820659..2820892 Agrobacterium vitis S4 7387022 YP_002550452.1 CDS Avi_3407 NC_011989.1 2820873 2822531 R transposase complement(2820873..2822531) Agrobacterium vitis S4 7387023 YP_002550453.1 CDS Avi_3408 NC_011989.1 2822577 2822930 R IS66 family transposase complement(2822577..2822930) Agrobacterium vitis S4 7387024 YP_002550454.1 CDS Avi_3409 NC_011989.1 2822927 2823379 R hypothetical protein complement(2822927..2823379) Agrobacterium vitis S4 7387025 YP_002550455.1 CDS Avi_3410 NC_011989.1 2823477 2824499 D hypothetical protein 2823477..2824499 Agrobacterium vitis S4 7387026 YP_002550456.1 CDS Avi_3411 NC_011989.1 2825054 2826250 D gamma butyrobetaine hydroxylase 2825054..2826250 Agrobacterium vitis S4 7387027 YP_002550457.1 CDS Avi_3412 NC_011989.1 2826262 2827248 D PEP phosphonomutase 2826262..2827248 Agrobacterium vitis S4 7387028 YP_002550458.1 CDS Avi_3414 NC_011989.1 2827256 2828398 D phosphonopyruvate decarboxylase 2827256..2828398 Agrobacterium vitis S4 7387029 YP_002550459.1 CDS Avi_3415 NC_011989.1 2828432 2829349 R LysR family transcriptional regulator complement(2828432..2829349) Agrobacterium vitis S4 7387030 YP_002550460.1 CDS Avi_3416 NC_011989.1 2829426 2830256 R hypothetical protein complement(2829426..2830256) Agrobacterium vitis S4 7387031 YP_002550461.1 CDS Avi_3418 NC_011989.1 2830253 2830834 R transcriptional regulator protein complement(2830253..2830834) Agrobacterium vitis S4 7387032 YP_002550462.1 CDS Avi_3419 NC_011989.1 2831462 2831623 R hypothetical protein complement(2831462..2831623) Agrobacterium vitis S4 7387033 YP_002550463.1 CDS Avi_3420 NC_011989.1 2832165 2832827 R transcription antitermination protein complement(2832165..2832827) Agrobacterium vitis S4 7387034 YP_002550464.1 CDS Avi_3421 NC_011989.1 2832814 2834268 R hypothetical protein complement(2832814..2834268) Agrobacterium vitis S4 7387035 YP_002550465.1 CDS Avi_3423 NC_011989.1 2834533 2835108 D bacteriophage repressor protein C1 2834533..2835108 Agrobacterium vitis S4 7387036 YP_002550466.1 CDS Avi_3428 NC_011989.1 2836063 2837385 R phage integrase complement(2836063..2837385) Agrobacterium vitis S4 7387037 YP_002550467.1 CDS Avi_3429 NC_011989.1 2837898 2838371 D transcriptional regulator MarR family 2837898..2838371 Agrobacterium vitis S4 7387172 YP_002550468.1 CDS Avi_3431 NC_011989.1 2838543 2839010 R hypothetical protein complement(2838543..2839010) Agrobacterium vitis S4 7387039 YP_002550469.1 CDS qor NC_011989.1 2839101 2840063 R quinone oxidoreductase complement(2839101..2840063) Agrobacterium vitis S4 7387040 YP_002550470.1 CDS Avi_3433 NC_011989.1 2840228 2841121 D LysR family transcriptional regulator 2840228..2841121 Agrobacterium vitis S4 7387041 YP_002550471.1 CDS Avi_3435 NC_011989.1 2841244 2842068 R hypothetical protein complement(2841244..2842068) Agrobacterium vitis S4 7387042 YP_002550472.1 CDS Avi_3436 NC_011989.1 2842083 2843048 R hypothetical protein complement(2842083..2843048) Agrobacterium vitis S4 7387043 YP_002550473.1 CDS Avi_3437 NC_011989.1 2843030 2844424 R hypothetical protein complement(2843030..2844424) Agrobacterium vitis S4 7387044 YP_002550474.1 CDS Avi_3439 NC_011989.1 2845122 2846096 D hypothetical protein 2845122..2846096 Agrobacterium vitis S4 7387045 YP_002550475.1 CDS Avi_3440 NC_011989.1 2846175 2846741 R invertase/recombinase complement(2846175..2846741) Agrobacterium vitis S4 7387046 YP_002550476.1 CDS Avi_3442 NC_011989.1 2846997 2847503 R hypothetical protein complement(2846997..2847503) Agrobacterium vitis S4 7387047 YP_002550477.1 CDS Avi_3443 NC_011989.1 2847919 2848161 D hypothetical protein 2847919..2848161 Agrobacterium vitis S4 7387048 YP_002550478.1 CDS Avi_3444 NC_011989.1 2848556 2848948 D hypothetical protein 2848556..2848948 Agrobacterium vitis S4 7387049 YP_002550479.1 CDS Avi_3445 NC_011989.1 2848953 2849318 D hypothetical protein 2848953..2849318 Agrobacterium vitis S4 7387050 YP_002550480.1 CDS Avi_3447 NC_011989.1 2849609 2850013 R hypothetical protein complement(2849609..2850013) Agrobacterium vitis S4 7387051 YP_002550481.1 CDS Avi_3448 NC_011989.1 2850237 2851664 D function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase 2850237..2851664 Agrobacterium vitis S4 7387052 YP_002550482.1 CDS Avi_3449 NC_011989.1 2851682 2852995 D catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines; dihydropyrimidine dehydrogenase 2851682..2852995 Agrobacterium vitis S4 7387053 YP_002550483.1 CDS Avi_3451 NC_011989.1 2853956 2856685 D GGDEF family protein 2853956..2856685 Agrobacterium vitis S4 7387054 YP_002550484.1 CDS Avi_3452 NC_011989.1 2856810 2857763 D membrane protein 2856810..2857763 Agrobacterium vitis S4 7387055 YP_002550485.1 CDS Avi_3453 NC_011989.1 2857778 2858419 R TetR family transcriptional regulator complement(2857778..2858419) Agrobacterium vitis S4 7387056 YP_002550486.1 CDS amaB NC_011989.1 2858743 2859972 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 2858743..2859972 Agrobacterium vitis S4 7387057 YP_002550487.1 CDS Avi_3456 NC_011989.1 2860041 2860568 D hypothetical protein 2860041..2860568 Agrobacterium vitis S4 7387058 YP_002550488.1 CDS dht NC_011989.1 2860788 2862242 D catalyzes the hydrolytic cleavage of hydantoin with aromatic side chains at the 5'position; phenylhydantoinase 2860788..2862242 Agrobacterium vitis S4 7387059 YP_002550489.1 CDS Avi_3458 NC_011989.1 2862783 2863574 D ABC transporter nucleotide binding/ATPase (nitrate) 2862783..2863574 Agrobacterium vitis S4 7387060 YP_002550490.1 CDS Avi_3459 NC_011989.1 2863564 2864430 D ABC transporter 2863564..2864430 Agrobacterium vitis S4 7387061 YP_002550491.1 CDS Avi_3460 NC_011989.1 2864427 2865293 D ABC transporter permease 2864427..2865293 Agrobacterium vitis S4 7387062 YP_002550492.1 CDS Avi_3461 NC_011989.1 2865326 2866318 D ABC transporter substrate binding protein (nitrate/sulfonate/taurine/bicarbonate) 2865326..2866318 Agrobacterium vitis S4 7387063 YP_002550493.1 CDS Avi_3463 NC_011989.1 2866966 2868102 D HlyD family secretion protein 2866966..2868102 Agrobacterium vitis S4 7387064 YP_002550494.1 CDS Avi_3464 NC_011989.1 2868115 2871420 D Acr family transporter 2868115..2871420 Agrobacterium vitis S4 7387065 YP_002550495.1 CDS Avi_3466 NC_011989.1 2871771 2872478 D regulator of Biofilm formation Fnr Family 2871771..2872478 Agrobacterium vitis S4 7387066 YP_002550496.1 CDS Avi_3467 NC_011989.1 2872650 2873468 R metal dependent hydrolase complement(2872650..2873468) Agrobacterium vitis S4 7387067 YP_002550497.1 CDS ureG NC_011989.1 2873470 2874081 R urease accessory protein UreG complement(2873470..2874081) Agrobacterium vitis S4 7387068 YP_002550498.1 CDS ureF NC_011989.1 2874136 2874828 R urease accessory protein complement(2874136..2874828) Agrobacterium vitis S4 7387069 YP_002550499.1 CDS ureE NC_011989.1 2874835 2875392 R urease accessory protein complement(2874835..2875392) Agrobacterium vitis S4 7387070 YP_002550500.1 CDS Avi_3471 NC_011989.1 2875494 2876222 R GGDEF family protein complement(2875494..2876222) Agrobacterium vitis S4 7387071 YP_002550501.1 CDS Avi_3473 NC_011989.1 2876651 2877190 R hypothetical protein complement(2876651..2877190) Agrobacterium vitis S4 7387072 YP_002550502.1 CDS Avi_3475 NC_011989.1 2877785 2879068 D glycosyltransferase 2877785..2879068 Agrobacterium vitis S4 7387073 YP_002550503.1 CDS Avi_3476 NC_011989.1 2879183 2879749 R hypothetical protein complement(2879183..2879749) Agrobacterium vitis S4 7387074 YP_002550504.1 CDS ureC NC_011989.1 2879876 2881588 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 ureC (alpha) and 3 ureAB (gamma/beta) subunits; urease subunit alpha complement(2879876..2881588) Agrobacterium vitis S4 7387075 YP_002550505.1 CDS Avi_3478 NC_011989.1 2881591 2882235 R urease accessory protein complement(2881591..2882235) Agrobacterium vitis S4 7387076 YP_002550506.1 CDS Avi_3481 NC_011989.1 2882251 2882661 R hypothetical protein complement(2882251..2882661) Agrobacterium vitis S4 7388755 YP_002550507.1 CDS ureB NC_011989.1 2882658 2882963 R ureases catalyze the hydrolysis of urea into ammonia and carbon dioxide; in Helicobacter pylori and Yersinia enterocolitica the ammonia released plays a key role in bacterial survival by neutralizing acids when colonizing the gastric mucosa; the holoenzyme is composed of 3 UreC (alpha) and 3 UreAB (gamma/beta); in Brucella suis the urease encoded by this operon (one of two urease-encoding operons found in its genome) is involved with urease activity, optimum growth, resistance to low-pH killing in-vitro and persistence in-vivo, while the other operon does not seem to be active; urease subunit beta complement(2882658..2882963) Agrobacterium vitis S4 7388756 YP_002550508.1 CDS Avi_3484 NC_011989.1 2883058 2883312 R hypothetical protein complement(2883058..2883312) Agrobacterium vitis S4 7388757 YP_002550509.1 CDS ureA NC_011989.1 2883317 2883619 R UreA, with UreB and UreC catalyzes the hydrolysis of urea into ammonia and carbon dioxide; nickel metalloenzyme; accessory proteins UreD, UreE, UreF, and UreG are necessary for assembly of the metallocenter; urease subunit gamma complement(2883317..2883619) Agrobacterium vitis S4 7388758 YP_002550510.1 CDS ureD NC_011989.1 2883643 2884479 R urease accessory protein complement(2883643..2884479) Agrobacterium vitis S4 7388759 YP_002550511.1 CDS Avi_3487 NC_011989.1 2884484 2885482 R hypothetical protein complement(2884484..2885482) Agrobacterium vitis S4 7388760 YP_002550512.1 CDS Avi_3488 NC_011989.1 2885633 2886976 R hypothetical protein complement(2885633..2886976) Agrobacterium vitis S4 7388761 YP_002550513.1 CDS Avi_3489 NC_011989.1 2887178 2887873 R ABC transporter complement(2887178..2887873) Agrobacterium vitis S4 7388762 YP_002550514.1 CDS Avi_3490 NC_011989.1 2887885 2888640 R ABC transporter nucleotide binding/ATPase (urea/amide) complement(2887885..2888640) Agrobacterium vitis S4 7388763 YP_002550515.1 CDS Avi_3491 NC_011989.1 2888644 2889804 R urea/amide ABC transporter permease complement(2888644..2889804) Agrobacterium vitis S4 7388764 YP_002550516.1 CDS Avi_3492 NC_011989.1 2889801 2891429 R urea/amide ABC transporter permease complement(2889801..2891429) Agrobacterium vitis S4 7388765 YP_002550517.1 CDS Avi_3494 NC_011989.1 2891516 2892805 R ABC transporter substrate binding protein (urea/amide) complement(2891516..2892805) Agrobacterium vitis S4 7388766 YP_002550518.1 CDS Avi_3495 NC_011989.1 2893086 2893667 D heme oxygenase 2893086..2893667 Agrobacterium vitis S4 7388767 YP_002550519.1 CDS Avi_3496 NC_011989.1 2893645 2896203 D bacteriophytochrome protein 2893645..2896203 Agrobacterium vitis S4 7388768 YP_002550520.1 CDS Avi_3497 NC_011989.1 2896297 2897127 R aspartyl/asparaginyl beta-hydroxylase complement(2896297..2897127) Agrobacterium vitis S4 7388769 YP_002550521.1 CDS Avi_3498 NC_011989.1 2897425 2900802 D two component sensor kinase 2897425..2900802 Agrobacterium vitis S4 7388770 YP_002550522.1 CDS Avi_3499 NC_011989.1 2901073 2902011 D transcriptional regulator LuxR family 2901073..2902011 Agrobacterium vitis S4 7388771 YP_002550523.1 CDS Avi_3501 NC_011989.1 2902709 2903242 D hypothetical protein 2902709..2903242 Agrobacterium vitis S4 7388772 YP_002550524.1 CDS Avi_3502 NC_011989.1 2903337 2903822 R protein kinase C substrate protein complement(2903337..2903822) Agrobacterium vitis S4 7388773 YP_002550525.1 CDS pemK NC_011989.1 2904493 2904804 R plasmid stable inheritance protein K complement(2904493..2904804) Agrobacterium vitis S4 7388774 YP_002550526.1 CDS pemI NC_011989.1 2904824 2905081 R plasmid stable inheritance protein I complement(2904824..2905081) Agrobacterium vitis S4 7388775 YP_002550527.1 CDS Avi_3505 NC_011989.1 2905175 2906155 R hypothetical protein complement(2905175..2906155) Agrobacterium vitis S4 7388776 YP_002550528.1 CDS minE NC_011989.1 2907113 2907373 R works in conjunction with MinC and MinD to enable cell division at the midpoint of the long axis of the cell; cell division topological specificity factor MinE complement(2907113..2907373) Agrobacterium vitis S4 7388777 YP_002550529.1 CDS minD NC_011989.1 2907370 2908185 R cell division inhibitor complement(2907370..2908185) Agrobacterium vitis S4 7388778 YP_002550530.1 CDS minC NC_011989.1 2908318 2909118 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(2908318..2909118) Agrobacterium vitis S4 7388779 YP_002550531.1 CDS Avi_3510 NC_011989.1 2909347 2910462 R amino acid ABC transporter substrate-binding protein complement(2909347..2910462) Agrobacterium vitis S4 7388780 YP_002550532.1 CDS Avi_3511 NC_011989.1 2910596 2910949 R hypothetical protein complement(2910596..2910949) Agrobacterium vitis S4 7388781 YP_002550533.1 CDS Avi_3512 NC_011989.1 2911004 2911735 R ABC transporter ATPase complement(2911004..2911735) Agrobacterium vitis S4 7388782 YP_002550534.1 CDS Avi_3513 NC_011989.1 2911732 2912610 R ABC transporter ATPase complement(2911732..2912610) Agrobacterium vitis S4 7388783 YP_002550535.1 CDS Avi_3514 NC_011989.1 2912607 2913998 R branched-chain amino acid ABC transporter permease complement(2912607..2913998) Agrobacterium vitis S4 7388784 YP_002550536.1 CDS livH NC_011989.1 2914003 2914905 R ABC transporter permease complement(2914003..2914905) Agrobacterium vitis S4 7388785 YP_002550537.1 CDS Avi_3517 NC_011989.1 2915168 2915794 R transcriptional regulator protein complement(2915168..2915794) Agrobacterium vitis S4 7388786 YP_002550538.1 CDS Avi_3518 NC_011989.1 2916112 2917317 D MFS permease 2916112..2917317 Agrobacterium vitis S4 7388787 YP_002550539.1 CDS Avi_3519 NC_011989.1 2917796 2918425 D adenylate sulfate kinase 2917796..2918425 Agrobacterium vitis S4 7388788 YP_002550540.1 CDS pssB NC_011989.1 2918499 2919281 D exopolysaccharide production protein PssB 2918499..2919281 Agrobacterium vitis S4 7388789 YP_002550541.1 CDS Avi_3522 NC_011989.1 2919538 2920548 D hypothetical protein 2919538..2920548 Agrobacterium vitis S4 7388790 YP_002550542.1 CDS Avi_3523 NC_011989.1 2920837 2921517 D exopolysaccharide production protein 2920837..2921517 Agrobacterium vitis S4 7388791 YP_002550543.1 CDS Avi_3524 NC_011989.1 2922069 2922344 D hypothetical protein 2922069..2922344 Agrobacterium vitis S4 7388792 YP_002550544.1 CDS Avi_3526 NC_011989.1 2923096 2923446 R hypothetical protein complement(2923096..2923446) Agrobacterium vitis S4 7388793 YP_002550545.1 CDS ctrA NC_011989.1 2923892 2924593 D two component response regulator 2923892..2924593 Agrobacterium vitis S4 7388794 YP_002550546.1 CDS petR NC_011989.1 2924838 2925197 R two component response regulator complement(2924838..2925197) Agrobacterium vitis S4 7388795 YP_002550547.1 CDS Avi_3529 NC_011989.1 2925484 2926134 R hypothetical protein complement(2925484..2926134) Agrobacterium vitis S4 7388796 YP_002550548.1 CDS Avi_3530 NC_011989.1 2926314 2926901 D hypothetical protein 2926314..2926901 Agrobacterium vitis S4 7388797 YP_002550549.1 CDS Avi_3531 NC_011989.1 2927065 2927787 D hypothetical protein 2927065..2927787 Agrobacterium vitis S4 7388798 YP_002550550.1 CDS Avi_3532 NC_011989.1 2927784 2928092 D hypothetical protein 2927784..2928092 Agrobacterium vitis S4 7388799 YP_002550551.1 CDS Avi_3534 NC_011989.1 2928150 2928989 R RNA methylase complement(2928150..2928989) Agrobacterium vitis S4 7388800 YP_002550552.1 CDS Avi_3535 NC_011989.1 2929002 2929382 R hypothetical protein complement(2929002..2929382) Agrobacterium vitis S4 7388801 YP_002550553.1 CDS rluD NC_011989.1 2929463 2930491 D ribosomal large subunit pseudouridine synthase RluD subfamily 2929463..2930491 Agrobacterium vitis S4 7388802 YP_002550554.1 CDS Avi_3537 NC_011989.1 2930528 2931811 D oxidoreductase 2930528..2931811 Agrobacterium vitis S4 7388803 YP_002550555.1 CDS rpoH NC_011989.1 2931954 2932856 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 2931954..2932856 Agrobacterium vitis S4 7388804 YP_002550556.1 CDS Avi_3539 NC_011989.1 2933115 2933696 D ABC transporter permease 2933115..2933696 Agrobacterium vitis S4 7388805 YP_002550557.1 CDS arsB NC_011989.1 2933754 2935028 R arsenical pump membrane protein complement(2933754..2935028) Agrobacterium vitis S4 7388806 YP_002550558.1 CDS Avi_3541 NC_011989.1 2935203 2936498 D MFS permease 2935203..2936498 Agrobacterium vitis S4 7388807 YP_002550559.1 CDS Avi_3542 NC_011989.1 2936639 2938786 R hypothetical protein complement(2936639..2938786) Agrobacterium vitis S4 7388808 YP_002550560.1 CDS purA NC_011989.1 2938846 2940144 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(2938846..2940144) Agrobacterium vitis S4 7388809 YP_002550561.1 CDS Avi_3545 NC_011989.1 2940522 2941415 D hypothetical protein 2940522..2941415 Agrobacterium vitis S4 7388810 YP_002550562.1 CDS prp1 NC_011989.1 2941425 2942204 R serine/threonine protein phosphatase I complement(2941425..2942204) Agrobacterium vitis S4 7388811 YP_002550563.1 CDS Avi_3547 NC_011989.1 2942508 2943308 D creatinine amidohydrolase 2942508..2943308 Agrobacterium vitis S4 7388812 YP_002550564.1 CDS Avi_3548 NC_011989.1 2943293 2944249 R LysR family transcriptional regulator complement(2943293..2944249) Agrobacterium vitis S4 7388813 YP_002550565.1 CDS Avi_3549 NC_011989.1 2944489 2945508 D ABC transporter substrate-binding protein 2944489..2945508 Agrobacterium vitis S4 7388814 YP_002550566.1 CDS Avi_3551 NC_011989.1 2945709 2946683 D ABC transporter ATPase 2945709..2946683 Agrobacterium vitis S4 7388815 YP_002550567.1 CDS Avi_3552 NC_011989.1 2946680 2947537 D ABC transporter permease 2946680..2947537 Agrobacterium vitis S4 7388816 YP_002550568.1 CDS Avi_3553 NC_011989.1 2947534 2948868 D cytosine deaminase-like protein 2947534..2948868 Agrobacterium vitis S4 7388817 YP_002550569.1 CDS Avi_3554 NC_011989.1 2948872 2950278 D hypothetical protein 2948872..2950278 Agrobacterium vitis S4 7388818 YP_002550570.1 CDS Avi_3555 NC_011989.1 2950503 2951084 D NAD(P)H dehydrogenase 2950503..2951084 Agrobacterium vitis S4 7388819 YP_002550571.1 CDS Avi_3556 NC_011989.1 2951094 2951810 R two component sensor kinase complement(2951094..2951810) Agrobacterium vitis S4 7388820 YP_002550572.1 CDS Avi_3557 NC_011989.1 2951910 2952311 R hypothetical protein complement(2951910..2952311) Agrobacterium vitis S4 7388821 YP_002550573.1 CDS Avi_3558 NC_011989.1 2952558 2952947 R hypothetical protein complement(2952558..2952947) Agrobacterium vitis S4 7388822 YP_002550574.1 CDS Avi_3559 NC_011989.1 2952944 2954371 R aldehyde dehydrogenase complement(2952944..2954371) Agrobacterium vitis S4 7388823 YP_002550575.1 CDS ung NC_011989.1 2954582 2955283 R uracil-DNA glycosylase complement(2954582..2955283) Agrobacterium vitis S4 7388824 YP_002550576.1 CDS Avi_3561 NC_011989.1 2955309 2956106 R aldolase complement(2955309..2956106) Agrobacterium vitis S4 7388825 YP_002550577.1 CDS Avi_3563 NC_011989.1 2956252 2957205 D hypothetical protein 2956252..2957205 Agrobacterium vitis S4 7388826 YP_002550578.1 CDS Avi_3564 NC_011989.1 2957165 2959090 R bifunctional enzyme including aminotransferase and chitin synthase complement(2957165..2959090) Agrobacterium vitis S4 7388827 YP_002550579.1 CDS Avi_3565 NC_011989.1 2959159 2960391 R hypothetical protein complement(2959159..2960391) Agrobacterium vitis S4 7388828 YP_002550580.1 CDS Avi_3566 NC_011989.1 2960422 2962428 R hypothetical protein complement(2960422..2962428) Agrobacterium vitis S4 7388829 YP_002550581.1 CDS Avi_3567 NC_011989.1 2963028 2964347 D ABC transporter substrate binding protein (sorbitol) 2963028..2964347 Agrobacterium vitis S4 7388830 YP_002550582.1 CDS Avi_3568 NC_011989.1 2964643 2965515 D sorbitol/mannitol ABC transporter permease 2964643..2965515 Agrobacterium vitis S4 7388831 YP_002550583.1 CDS Avi_3569 NC_011989.1 2965519 2966349 D sorbitol/mannitol ABC transporter permease 2965519..2966349 Agrobacterium vitis S4 7388832 YP_002550584.1 CDS Avi_3570 NC_011989.1 2966362 2967360 D ABC transporter nucleotide binding/ATPase (sorbitol/mannitol) 2966362..2967360 Agrobacterium vitis S4 7388833 YP_002550585.1 CDS Avi_3571 NC_011989.1 2967357 2968133 D Converts D-sorbitol to L-sorbose; sorbitol dehydrogenase 2967357..2968133 Agrobacterium vitis S4 7388834 YP_002550586.1 CDS mtlK NC_011989.1 2968440 2969927 D mannitol 2-dehydrogenase 2968440..2969927 Agrobacterium vitis S4 7388835 YP_002550587.1 CDS Avi_3573 NC_011989.1 2969939 2970613 D hypothetical protein 2969939..2970613 Agrobacterium vitis S4 7388836 YP_002550588.1 CDS Avi_3574 NC_011989.1 2970639 2972210 D ribitol kinase 2970639..2972210 Agrobacterium vitis S4 7386495 YP_002550589.1 CDS mnmA NC_011989.1 2972422 2973630 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 2972422..2973630 Agrobacterium vitis S4 7388009 YP_002550590.1 CDS fhuA NC_011989.1 2974161 2976317 D hydroxamate-type ferrisiderophore receptor 2974161..2976317 Agrobacterium vitis S4 7387163 YP_002550591.1 CDS Avi_3578 NC_011989.1 2976503 2976883 R hypothetical protein complement(2976503..2976883) Agrobacterium vitis S4 7388011 YP_002550592.1 CDS fhuB NC_011989.1 2976956 2978935 R part of the FhuBCD ATP-dependent iron (III) hydroxamate transporter involved in the high-affinity transport of Fe(3+)-ferrichrome; iron-hydroxamate transporter permease subunit complement(2976956..2978935) Agrobacterium vitis S4 7388012 YP_002550593.1 CDS fhuD NC_011989.1 2978932 2979765 R ABC transporter substrate binding protein (ferrichrome) complement(2978932..2979765) Agrobacterium vitis S4 7388013 YP_002550594.1 CDS fhuC NC_011989.1 2979821 2980636 R ABC transporter nucleotide binding/ATPase (ferrichrome) complement(2979821..2980636) Agrobacterium vitis S4 7388014 YP_002550595.1 CDS Avi_3583 NC_011989.1 2980829 2981710 D AraC family transcriptional regulator 2980829..2981710 Agrobacterium vitis S4 7388015 YP_002550596.1 CDS Avi_3585 NC_011989.1 2981989 2984145 D ferrichrome receptor precursor protein 2981989..2984145 Agrobacterium vitis S4 7388016 YP_002550597.1 CDS Avi_3586 NC_011989.1 2984196 2984921 R hypothetical protein complement(2984196..2984921) Agrobacterium vitis S4 7388017 YP_002550598.1 CDS Avi_3587 NC_011989.1 2985225 2985809 D hypothetical protein 2985225..2985809 Agrobacterium vitis S4 7388018 YP_002550599.1 CDS Avi_3590 NC_011989.1 2986345 2987157 R hypothetical protein complement(2986345..2987157) Agrobacterium vitis S4 7388019 YP_002550600.1 CDS Avi_3592 NC_011989.1 2987599 2988603 R Cytochrome bd type quinol oxidase subunit 2 protein complement(2987599..2988603) Agrobacterium vitis S4 7388020 YP_002550601.1 CDS Avi_3593 NC_011989.1 2988593 2990011 R cytochrome ubiquinol oxidase subunit 1 transmembrane protein complement(2988593..2990011) Agrobacterium vitis S4 7388021 YP_002550602.1 CDS serA NC_011989.1 2990219 2991814 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(2990219..2991814) Agrobacterium vitis S4 7388022 YP_002550603.1 CDS serC NC_011989.1 2991899 2993077 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase complement(2991899..2993077) Agrobacterium vitis S4 7388023 YP_002550604.1 CDS Avi_3598 NC_011989.1 2993347 2993937 D hypothetical protein 2993347..2993937 Agrobacterium vitis S4 7388024 YP_002550605.1 CDS Avi_3600 NC_011989.1 2993874 2994860 R hypothetical protein complement(2993874..2994860) Agrobacterium vitis S4 7388025 YP_002550606.1 CDS Avi_3602 NC_011989.1 2995108 2995926 R outer surface protein complement(2995108..2995926) Agrobacterium vitis S4 7388026 YP_002550607.1 CDS Avi_3603 NC_011989.1 2996064 2997080 R flavin dependent oxidoreductase complement(2996064..2997080) Agrobacterium vitis S4 7388027 YP_002550608.1 CDS ruvC NC_011989.1 2997286 2997795 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 2997286..2997795 Agrobacterium vitis S4 7388028 YP_002550609.1 CDS ruvA NC_011989.1 2997821 2998438 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 2997821..2998438 Agrobacterium vitis S4 7388029 YP_002550610.1 CDS Avi_3606 NC_011989.1 2998493 2998801 D Regulators of stationary/sporulation gene expression protein 2998493..2998801 Agrobacterium vitis S4 7388030 YP_002550611.1 CDS ruvB NC_011989.1 2999147 3000190 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 2999147..3000190 Agrobacterium vitis S4 7388031 YP_002550612.1 CDS Avi_3610 NC_011989.1 3000187 3001077 D Phosphohydrolase 3000187..3001077 Agrobacterium vitis S4 7388032 YP_002550613.1 CDS mutT NC_011989.1 3001088 3001597 D MutT/nudix family protein 3001088..3001597 Agrobacterium vitis S4 7388033 YP_002550614.1 CDS mutT NC_011989.1 3001594 3002103 D MutT/nudix family protein 3001594..3002103 Agrobacterium vitis S4 7388034 YP_002550615.1 CDS Avi_3614 NC_011989.1 3002093 3002653 D hypothetical protein 3002093..3002653 Agrobacterium vitis S4 7388035 YP_002550616.1 CDS ybgC NC_011989.1 3002665 3003114 D tol-pal system-associated acyl-CoA thioesterase 3002665..3003114 Agrobacterium vitis S4 7388036 YP_002550617.1 CDS tolQ NC_011989.1 3003566 3004285 D protein TolQ 3003566..3004285 Agrobacterium vitis S4 7388037 YP_002550618.1 CDS tolR NC_011989.1 3004335 3004793 D protein TolR 3004335..3004793 Agrobacterium vitis S4 7388038 YP_002550619.1 CDS tolA NC_011989.1 3004803 3005972 D hypothetical protein 3004803..3005972 Agrobacterium vitis S4 7388039 YP_002550620.1 CDS tolB NC_011989.1 3006025 3007332 D forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB 3006025..3007332 Agrobacterium vitis S4 7388040 YP_002550621.1 CDS pal NC_011989.1 3007564 3008097 D peptidoglycan-associated lipoprotein 3007564..3008097 Agrobacterium vitis S4 7388041 YP_002550622.1 CDS ygbF NC_011989.1 3008314 3009315 D tol-pal system protein YbgF 3008314..3009315 Agrobacterium vitis S4 7388042 YP_002550623.1 CDS Avi_3626 NC_011989.1 3009315 3010679 D hypothetical protein 3009315..3010679 Agrobacterium vitis S4 7388043 YP_002550624.1 CDS ftsH NC_011989.1 3010686 3012731 D metalloprotease 3010686..3012731 Agrobacterium vitis S4 7388044 YP_002550625.1 CDS glmM NC_011989.1 3013000 3014352 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 3013000..3014352 Agrobacterium vitis S4 7388045 YP_002550626.1 CDS Avi_3631 NC_011989.1 3014452 3015198 R hypothetical protein complement(3014452..3015198) Agrobacterium vitis S4 7388046 YP_002550627.1 CDS Avi_3632 NC_011989.1 3015463 3015966 D hypothetical protein 3015463..3015966 Agrobacterium vitis S4 7388047 YP_002550628.1 CDS Avi_3633 NC_011989.1 3015984 3016856 R hypothetical protein complement(3015984..3016856) Agrobacterium vitis S4 7388048 YP_002550629.1 CDS Avi_3634 NC_011989.1 3016995 3018875 R the Vibrio parahaemolyticus gene VP2867 was found to be a potassium/proton antiporter; can rapidly extrude potassium against a potassium gradient at alkaline pH when cloned and expressed in Escherichia coli; potassium/proton antiporter complement(3016995..3018875) Agrobacterium vitis S4 7388049 YP_002550630.1 CDS Avi_3635 NC_011989.1 3019703 3021301 R hypothetical protein complement(3019703..3021301) Agrobacterium vitis S4 7388050 YP_002550631.1 CDS Avi_3636 NC_011989.1 3021548 3021991 R hypothetical protein complement(3021548..3021991) Agrobacterium vitis S4 7388051 YP_002550632.1 CDS gapA NC_011989.1 3022721 3023728 R Glyceraldehyde 3-Phosphate Dehydrogenase complement(3022721..3023728) Agrobacterium vitis S4 7388052 YP_002550633.1 CDS tktA NC_011989.1 3023927 3025903 R transketolase complement(3023927..3025903) Agrobacterium vitis S4 7388053 YP_002550634.1 CDS Avi_3640 NC_011989.1 3026354 3026623 D hypothetical protein 3026354..3026623 Agrobacterium vitis S4 7388054 YP_002550635.1 CDS Avi_3642 NC_011989.1 3026660 3027025 D hypothetical protein 3026660..3027025 Agrobacterium vitis S4 7388055 YP_002550636.1 CDS Avi_3644 NC_011989.1 3027371 3028009 D transcriptional regulator protein 3027371..3028009 Agrobacterium vitis S4 7387988 YP_002550637.1 CDS mclA NC_011989.1 3028147 3030189 R methyl-accepting chemotaxis protein complement(3028147..3030189) Agrobacterium vitis S4 7388057 YP_002550638.1 CDS Avi_3649 NC_011989.1 3030501 3031079 D 5,10-methenyltetrahydrofolate synthetase 3030501..3031079 Agrobacterium vitis S4 7388058 YP_002550639.1 CDS Avi_3650 NC_011989.1 3031093 3031917 D hypothetical protein 3031093..3031917 Agrobacterium vitis S4 7388059 YP_002550640.1 CDS pgk NC_011989.1 3032037 3033239 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 3032037..3033239 Agrobacterium vitis S4 7388060 YP_002550641.1 CDS Avi_3652 NC_011989.1 3033424 3034449 D fructose bisphosphate aldolase 3033424..3034449 Agrobacterium vitis S4 7388061 YP_002550642.1 CDS Avi_3655 NC_011989.1 3035557 3036726 D hypothetical protein 3035557..3036726 Agrobacterium vitis S4 7388063 YP_002550643.1 CDS Avi_3656 NC_011989.1 3036931 3037257 D hypothetical protein 3036931..3037257 Agrobacterium vitis S4 7388064 YP_002550644.1 CDS Avi_3657 NC_011989.1 3037377 3037532 R hypothetical protein complement(3037377..3037532) Agrobacterium vitis S4 7388065 YP_002550645.1 CDS Avi_3661 NC_011989.1 3037820 3039103 D MFS permease 3037820..3039103 Agrobacterium vitis S4 7388066 YP_002550646.1 CDS Avi_3662 NC_011989.1 3039107 3039301 D hypothetical protein 3039107..3039301 Agrobacterium vitis S4 7388067 YP_002550647.1 CDS Avi_3663 NC_011989.1 3039710 3040225 D hypothetical protein 3039710..3040225 Agrobacterium vitis S4 7388068 YP_002550648.1 CDS rpmE NC_011989.1 3040423 3040644 R 50S ribosomal protein L31 complement(3040423..3040644) Agrobacterium vitis S4 7388069 YP_002550649.1 CDS Avi_3667 NC_011989.1 3040811 3042637 D ABC transporter ATPase 3040811..3042637 Agrobacterium vitis S4 7388070 YP_002550650.1 CDS Avi_3668 NC_011989.1 3042642 3044300 R proposed role in polysaccahride synthesis; putative FAD-binding dehydrogenase complement(3042642..3044300) Agrobacterium vitis S4 7388071 YP_002550651.1 CDS motB NC_011989.1 3044643 3045674 R hypothetical protein complement(3044643..3045674) Agrobacterium vitis S4 7388072 YP_002550652.1 CDS Avi_3671 NC_011989.1 3045678 3046691 R hypothetical protein complement(3045678..3046691) Agrobacterium vitis S4 7388073 YP_002550653.1 CDS suhB NC_011989.1 3046876 3047676 R extragenic suppressor protein SuhB complement(3046876..3047676) Agrobacterium vitis S4 7388074 YP_002550654.1 CDS enhC NC_011989.1 3047820 3049442 R enhanced entry protein complement(3047820..3049442) Agrobacterium vitis S4 7388075 YP_002550655.1 CDS thiE NC_011989.1 3049439 3050122 R catalyzes the formation of thiamine monophosphate from 2-methyl-4-amino-5-hydroxymethylpyrimidine diphosphate and 4-methyl-5-(2-phosphono-oxyethyl)-thiazole; thiamine-phosphate pyrophosphorylase complement(3049439..3050122) Agrobacterium vitis S4 7388076 YP_002550656.1 CDS Avi_3677 NC_011989.1 3050453 3051220 D hypothetical protein 3050453..3051220 Agrobacterium vitis S4 7388077 YP_002550657.1 CDS Avi_3678 NC_011989.1 3051403 3051663 D transcriptional regulator ArsR family 3051403..3051663 Agrobacterium vitis S4 7388078 YP_002550658.1 CDS Avi_3680 NC_011989.1 3052004 3052177 R hypothetical protein complement(3052004..3052177) Agrobacterium vitis S4 7388079 YP_002550659.1 CDS Avi_3681 NC_011989.1 3052488 3052721 D hypothetical protein 3052488..3052721 Agrobacterium vitis S4 7388080 YP_002550660.1 CDS purE NC_011989.1 3052738 3053238 D phosphoribosylaminoimidazole carboxylase catalytic subunit 3052738..3053238 Agrobacterium vitis S4 7388081 YP_002550661.1 CDS purK NC_011989.1 3053266 3054321 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 3053266..3054321 Agrobacterium vitis S4 7388082 YP_002550662.1 CDS rpmJ NC_011989.1 3054484 3054609 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 3054484..3054609 Agrobacterium vitis S4 7388083 YP_002550663.1 CDS Avi_3687 NC_011989.1 3054718 3055503 D hypothetical protein 3054718..3055503 Agrobacterium vitis S4 7388084 YP_002550664.1 CDS Avi_3689 NC_011989.1 3055765 3056772 D hypothetical protein 3055765..3056772 Agrobacterium vitis S4 7388085 YP_002550665.1 CDS pykA NC_011989.1 3057422 3058861 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(3057422..3058861) Agrobacterium vitis S4 7388086 YP_002550666.1 CDS Avi_3691 NC_011989.1 3058858 3059472 R hypothetical protein complement(3058858..3059472) Agrobacterium vitis S4 7388087 YP_002550667.1 CDS Avi_3692 NC_011989.1 3059829 3060632 D hypothetical protein 3059829..3060632 Agrobacterium vitis S4 7388088 YP_002550668.1 CDS Avi_3693 NC_011989.1 3060629 3060955 D hypothetical protein 3060629..3060955 Agrobacterium vitis S4 7388089 YP_002550669.1 CDS Avi_3695 NC_011989.1 3061183 3061446 D hypothetical protein 3061183..3061446 Agrobacterium vitis S4 7388090 YP_002550670.1 CDS Avi_3697 NC_011989.1 3061767 3062168 R hypothetical protein complement(3061767..3062168) Agrobacterium vitis S4 7388091 YP_002550671.1 CDS Avi_3698 NC_011989.1 3062165 3063658 R hypothetical protein complement(3062165..3063658) Agrobacterium vitis S4 7388174 YP_002550672.1 CDS Avi_3699 NC_011989.1 3064108 3065427 R sigma 54 dependent transcriptional activator complement(3064108..3065427) Agrobacterium vitis S4 7388175 YP_002550673.1 CDS pepF NC_011989.1 3066232 3068091 D oligoendopeptidase F 3066232..3068091 Agrobacterium vitis S4 7388176 YP_002550674.1 CDS pabB NC_011989.1 3068111 3069346 D catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; aminodeoxychorismate synthase 3068111..3069346 Agrobacterium vitis S4 7388177 YP_002550675.1 CDS Avi_3704 NC_011989.1 3069331 3069975 D hypothetical protein 3069331..3069975 Agrobacterium vitis S4 7388178 YP_002550676.1 CDS Avi_3705 NC_011989.1 3070209 3071330 D hypothetical protein 3070209..3071330 Agrobacterium vitis S4 7388179 YP_002550677.1 CDS Avi_3707 NC_011989.1 3071611 3073053 D homospermidine synthase 3071611..3073053 Agrobacterium vitis S4 7388180 YP_002550678.1 CDS Avi_3710 NC_011989.1 3073391 3073783 D outer membrane lipoprotein 3073391..3073783 Agrobacterium vitis S4 7388181 YP_002550679.1 CDS Avi_3711 NC_011989.1 3073967 3075883 D 5prime-nucleotidase 3073967..3075883 Agrobacterium vitis S4 7388182 YP_002550680.1 CDS hemH NC_011989.1 3076032 3077066 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 3076032..3077066 Agrobacterium vitis S4 7388183 YP_002550681.1 CDS Avi_3713 NC_011989.1 3077184 3078425 R hypothetical protein complement(3077184..3078425) Agrobacterium vitis S4 7388184 YP_002550682.1 CDS mcpA NC_011989.1 3078652 3080691 D methyl-accepting chemotaxis protein 3078652..3080691 Agrobacterium vitis S4 7388185 YP_002550683.1 CDS Avi_3715 NC_011989.1 3080774 3081988 R hypothetical protein complement(3080774..3081988) Agrobacterium vitis S4 7388186 YP_002550684.1 CDS exsD NC_011989.1 3082077 3082844 R radical activating protein complement(3082077..3082844) Agrobacterium vitis S4 7388187 YP_002550685.1 CDS exsC NC_011989.1 3082823 3083179 R 6-pyruvoyl tetrahydropterin synthase complement(3082823..3083179) Agrobacterium vitis S4 7388188 YP_002550686.1 CDS exsB NC_011989.1 3083184 3083891 R succinoglycan biosynthesis regulator complement(3083184..3083891) Agrobacterium vitis S4 7388189 YP_002550687.1 CDS Avi_3720 NC_011989.1 3084089 3085123 D hypothetical protein 3084089..3085123 Agrobacterium vitis S4 7388190 YP_002550688.1 CDS Avi_3721 NC_011989.1 3085130 3085588 D hypothetical protein 3085130..3085588 Agrobacterium vitis S4 7388191 YP_002550689.1 CDS kpsF NC_011989.1 3085833 3086828 R capsule expression protein complement(3085833..3086828) Agrobacterium vitis S4 7388192 YP_002550690.1 CDS Avi_3723 NC_011989.1 3087036 3088553 D hypothetical protein 3087036..3088553 Agrobacterium vitis S4 7388193 YP_002550691.1 CDS galU NC_011989.1 3088616 3089503 R UTP-glucose-1-phosphate uridylyltransferase complement(3088616..3089503) Agrobacterium vitis S4 7388194 YP_002550692.1 CDS mltB NC_011989.1 3089761 3090978 D lytic murein transglycosylase 3089761..3090978 Agrobacterium vitis S4 7388195 YP_002550693.1 CDS Avi_3728 NC_011989.1 3091024 3092250 D hypothetical protein 3091024..3092250 Agrobacterium vitis S4 7388196 YP_002550694.1 CDS Avi_3729 NC_011989.1 3092635 3094569 R methyl-accepting chemotaxis protein complement(3092635..3094569) Agrobacterium vitis S4 7388197 YP_002550695.1 CDS gltD NC_011989.1 3094925 3096379 R glutamate synthase is composed of subunits alpha and beta; beta subunit is a flavin adenine dinucleotide-NADPH dependent oxidoreductase; provides electrons to the alpha subunit, which binds L-glutamine and 2-oxoglutarate and forms L-glutamate; glutamate synthase subunit beta complement(3094925..3096379) Agrobacterium vitis S4 7388198 YP_002550696.1 CDS Avi_3732 NC_011989.1 3096568 3096966 R nucleic acid-binding protein complement(3096568..3096966) Agrobacterium vitis S4 7388199 YP_002550697.1 CDS Avi_3733 NC_011989.1 3096963 3097265 R Virulence-associated protein complement(3096963..3097265) Agrobacterium vitis S4 7388200 YP_002550698.1 CDS gltB NC_011989.1 3097290 3102011 R glutamate synthase large subunit complement(3097290..3102011) Agrobacterium vitis S4 7388201 YP_002550699.1 CDS Avi_3736 NC_011989.1 3102724 3103770 D threonine aldolase 3102724..3103770 Agrobacterium vitis S4 7388202 YP_002550700.1 CDS ibpA NC_011989.1 3103857 3104324 R small heat shock protein complement(3103857..3104324) Agrobacterium vitis S4 7388203 YP_002550701.1 CDS pldB NC_011989.1 3104754 3105752 D lysophospholipase 3104754..3105752 Agrobacterium vitis S4 7388204 YP_002550702.1 CDS Avi_3741 NC_011989.1 3105969 3107018 D hypothetical protein 3105969..3107018 Agrobacterium vitis S4 7388205 YP_002550703.1 CDS Avi_3743 NC_011989.1 3107079 3107852 R inositol monophosphatase family protein complement(3107079..3107852) Agrobacterium vitis S4 7388206 YP_002550704.1 CDS Avi_3744 NC_011989.1 3108205 3109101 R hypothetical protein complement(3108205..3109101) Agrobacterium vitis S4 7387983 YP_002550705.1 CDS Avi_3746 NC_011989.1 3109401 3109766 D chemotaxis response regulator 3109401..3109766 Agrobacterium vitis S4 7388208 YP_002550706.1 CDS Avi_3749 NC_011989.1 3110309 3111451 D Small-conductance mechanosensitive ion channel 3110309..3111451 Agrobacterium vitis S4 7387164 YP_002550707.1 CDS Avi_3751 NC_011989.1 3111723 3113150 D mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 3111723..3113150 Agrobacterium vitis S4 7388210 YP_002550708.1 CDS Avi_3752 NC_011989.1 3113434 3116778 D hypothetical protein 3113434..3116778 Agrobacterium vitis S4 7388211 YP_002550709.1 CDS Avi_3754 NC_011989.1 3117015 3119429 D hypothetical protein 3117015..3119429 Agrobacterium vitis S4 7388212 YP_002550710.1 CDS Avi_3755 NC_011989.1 3119444 3120322 D hypothetical protein 3119444..3120322 Agrobacterium vitis S4 7388213 YP_002550711.1 CDS Avi_3756 NC_011989.1 3120501 3121814 D hypothetical protein 3120501..3121814 Agrobacterium vitis S4 7388214 YP_002550712.1 CDS Avi_3757 NC_011989.1 3121907 3122119 D hypothetical protein 3121907..3122119 Agrobacterium vitis S4 7388215 YP_002550713.1 CDS glgP NC_011989.1 3122436 3124904 D glycogen phosphorylase 3122436..3124904 Agrobacterium vitis S4 7388216 YP_002550714.1 CDS glgB NC_011989.1 3124904 3127153 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 3124904..3127153 Agrobacterium vitis S4 7388217 YP_002550715.1 CDS glgC NC_011989.1 3127228 3128493 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 3127228..3128493 Agrobacterium vitis S4 7388218 YP_002550716.1 CDS glgA NC_011989.1 3128499 3129935 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 3128499..3129935 Agrobacterium vitis S4 7388219 YP_002550717.1 CDS pgm NC_011989.1 3129943 3131571 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 3129943..3131571 Agrobacterium vitis S4 7388220 YP_002550718.1 CDS glgX NC_011989.1 3131586 3133535 D glycogen debranching enzyme GlgX 3131586..3133535 Agrobacterium vitis S4 7388221 YP_002550719.1 CDS nodN NC_011989.1 3133839 3134327 D nodulation protein N 3133839..3134327 Agrobacterium vitis S4 7388222 YP_002550720.1 CDS Avi_3766 NC_011989.1 3134329 3135378 D hypothetical protein 3134329..3135378 Agrobacterium vitis S4 7388223 YP_002550721.1 CDS Avi_3768 NC_011989.1 3135958 3137487 R hypothetical protein complement(3135958..3137487) Agrobacterium vitis S4 7388224 YP_002550722.1 CDS Avi_3769 NC_011989.1 3137497 3138036 R hypothetical protein complement(3137497..3138036) Agrobacterium vitis S4 7388225 YP_002550723.1 CDS Avi_3770 NC_011989.1 3138301 3138525 D hypothetical protein 3138301..3138525 Agrobacterium vitis S4 7388226 YP_002550724.1 CDS Avi_3772 NC_011989.1 3138601 3139410 R O-linked GlcNAc transferase complement(3138601..3139410) Agrobacterium vitis S4 7388227 YP_002550725.1 CDS rpsU NC_011989.1 3139950 3140189 R 30S ribosomal protein S21 complement(3139950..3140189) Agrobacterium vitis S4 7388228 YP_002550726.1 CDS soxB NC_011989.1 3140646 3141899 D sarcosine oxidase subunit beta 3140646..3141899 Agrobacterium vitis S4 7388230 YP_002550727.1 CDS soxD NC_011989.1 3141916 3142236 D sarcosine oxidase subunit delta 3141916..3142236 Agrobacterium vitis S4 7388229 YP_002550728.1 CDS soxA NC_011989.1 3142233 3145226 D sarcosine oxidase subunit alpha 3142233..3145226 Agrobacterium vitis S4 7388231 YP_002550729.1 CDS soxG NC_011989.1 3145219 3145785 D sarcosine oxidase subunit gamma 3145219..3145785 Agrobacterium vitis S4 7388232 YP_002550730.1 CDS Avi_3779 NC_011989.1 3146108 3147169 R nucleoside-diphosphate-sugar epimerase complement(3146108..3147169) Agrobacterium vitis S4 7388233 YP_002550731.1 CDS Avi_3780 NC_011989.1 3147268 3147660 D transcriptional regulator protein 3147268..3147660 Agrobacterium vitis S4 7388234 YP_002550732.1 CDS Avi_3781 NC_011989.1 3147717 3147998 R hypothetical protein complement(3147717..3147998) Agrobacterium vitis S4 7388235 YP_002550733.1 CDS Avi_3782 NC_011989.1 3147985 3148245 R DNA-damage-inducible protein complement(3147985..3148245) Agrobacterium vitis S4 7388236 YP_002550734.1 CDS Avi_3784 NC_011989.1 3148402 3148650 D hypothetical protein 3148402..3148650 Agrobacterium vitis S4 7388237 YP_002550735.1 CDS Avi_3785 NC_011989.1 3148640 3148930 D stability protein StbE 3148640..3148930 Agrobacterium vitis S4 7388238 YP_002550736.1 CDS Avi_3786 NC_011989.1 3149289 3149756 D hypothetical protein 3149289..3149756 Agrobacterium vitis S4 7388239 YP_002550737.1 CDS Avi_3787 NC_011989.1 3149874 3150146 D hypothetical protein 3149874..3150146 Agrobacterium vitis S4 7388240 YP_002550738.1 CDS Avi_3788 NC_011989.1 3150187 3150393 D hypothetical protein 3150187..3150393 Agrobacterium vitis S4 7388241 YP_002550739.1 CDS Avi_3789 NC_011989.1 3150428 3151534 R periplasmic mannitol-binding protein complement(3150428..3151534) Agrobacterium vitis S4 7388242 YP_002550740.1 CDS Avi_3790 NC_011989.1 3151736 3152500 D hypothetical protein 3151736..3152500 Agrobacterium vitis S4 7388243 YP_002550741.1 CDS Avi_3791 NC_011989.1 3152651 3153610 R dehydrogenase complement(3152651..3153610) Agrobacterium vitis S4 7388244 YP_002550742.1 CDS pckR NC_011989.1 3153623 3154648 R transcriptional regulator LacI family complement(3153623..3154648) Agrobacterium vitis S4 7388245 YP_002550743.1 CDS Avi_3793 NC_011989.1 3154756 3155298 R transcriptional regulator MarR family complement(3154756..3155298) Agrobacterium vitis S4 7388246 YP_002550744.1 CDS Avi_3794 NC_011989.1 3155388 3156209 D creatinine amidohydrolase 3155388..3156209 Agrobacterium vitis S4 7388247 YP_002550745.1 CDS Avi_3796 NC_011989.1 3156258 3157355 D hypothetical protein 3156258..3157355 Agrobacterium vitis S4 7388248 YP_002550746.1 CDS Avi_3798 NC_011989.1 3157411 3158397 D hypothetical protein 3157411..3158397 Agrobacterium vitis S4 7388249 YP_002550747.1 CDS Avi_3799 NC_011989.1 3158647 3160452 D methyl-accepting chemotaxis protein 3158647..3160452 Agrobacterium vitis S4 7388250 YP_002550748.1 CDS Avi_3800 NC_011989.1 3160578 3161279 R outer membrane protein complement(3160578..3161279) Agrobacterium vitis S4 7388251 YP_002550749.1 CDS Avi_3801 NC_011989.1 3161700 3163328 D Phospholipase C protein 3161700..3163328 Agrobacterium vitis S4 7388252 YP_002550750.1 CDS Avi_3802 NC_011989.1 3163354 3164718 D hypothetical protein 3163354..3164718 Agrobacterium vitis S4 7388253 YP_002550751.1 CDS Avi_3804 NC_011989.1 3164930 3165520 R acetyltransferase complement(3164930..3165520) Agrobacterium vitis S4 7388254 YP_002550752.1 CDS speF NC_011989.1 3165600 3166733 R ornithine decarboxylase complement(3165600..3166733) Agrobacterium vitis S4 7388255 YP_002550753.1 CDS ptxR NC_011989.1 3167282 3168211 D LysR family transcriptional regulator 3167282..3168211 Agrobacterium vitis S4 7388257 YP_002550754.1 CDS Avi_3809 NC_011989.1 3168419 3169078 D hypothetical protein 3168419..3169078 Agrobacterium vitis S4 7388506 YP_002550755.1 CDS Avi_3811 NC_011989.1 3169072 3170241 D hypothetical protein 3169072..3170241 Agrobacterium vitis S4 7388507 YP_002550756.1 CDS Avi_3812 NC_011989.1 3170223 3170435 R hypothetical protein complement(3170223..3170435) Agrobacterium vitis S4 7388508 YP_002550757.1 CDS Avi_3813 NC_011989.1 3170432 3171121 R acetyltransferase complement(3170432..3171121) Agrobacterium vitis S4 7388509 YP_002550758.1 CDS Avi_3814 NC_011989.1 3171413 3172117 R hypothetical protein complement(3171413..3172117) Agrobacterium vitis S4 7388510 YP_002550759.1 CDS Avi_3816 NC_011989.1 3172218 3172856 R catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase complement(3172218..3172856) Agrobacterium vitis S4 7388511 YP_002550760.1 CDS Avi_3819 NC_011989.1 3173016 3173510 D hypothetical protein 3173016..3173510 Agrobacterium vitis S4 7388512 YP_002550761.1 CDS Avi_3820 NC_011989.1 3173488 3174414 D hypothetical protein 3173488..3174414 Agrobacterium vitis S4 7388513 YP_002550762.1 CDS Avi_3821 NC_011989.1 3174425 3175123 D hypothetical protein 3174425..3175123 Agrobacterium vitis S4 7388514 YP_002550763.1 CDS Avi_3822 NC_011989.1 3175220 3175597 D hypothetical protein 3175220..3175597 Agrobacterium vitis S4 7388515 YP_002550764.1 CDS Avi_3823 NC_011989.1 3175674 3176618 D hypothetical protein 3175674..3176618 Agrobacterium vitis S4 7388516 YP_002550765.1 CDS Avi_3825 NC_011989.1 3176671 3177420 R hypothetical protein complement(3176671..3177420) Agrobacterium vitis S4 7388517 YP_002550766.1 CDS Avi_3826 NC_011989.1 3177534 3177992 R hypothetical protein complement(3177534..3177992) Agrobacterium vitis S4 7388518 YP_002550767.1 CDS bgl NC_011989.1 3177989 3179362 R beta-glucosidase complement(3177989..3179362) Agrobacterium vitis S4 7388519 YP_002550768.1 CDS Avi_3829 NC_011989.1 3179599 3180645 D hypothetical protein 3179599..3180645 Agrobacterium vitis S4 7388520 YP_002550769.1 CDS Avi_3830 NC_011989.1 3180704 3181885 R NAD binding oxidoreductase complement(3180704..3181885) Agrobacterium vitis S4 7388521 YP_002550770.1 CDS Avi_3831 NC_011989.1 3181904 3182956 R hypothetical protein complement(3181904..3182956) Agrobacterium vitis S4 7388522 YP_002550771.1 CDS xylA NC_011989.1 3183055 3184362 R catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase complement(3183055..3184362) Agrobacterium vitis S4 7388523 YP_002550772.1 CDS xylB NC_011989.1 3184400 3185869 R xylulokinase complement(3184400..3185869) Agrobacterium vitis S4 7388524 YP_002550773.1 CDS Avi_3834 NC_011989.1 3185893 3186933 R transcriptional regulator LacI family complement(3185893..3186933) Agrobacterium vitis S4 7388525 YP_002550774.1 CDS emrB NC_011989.1 3187174 3188751 R MFS permease complement(3187174..3188751) Agrobacterium vitis S4 7388526 YP_002550775.1 CDS emrA NC_011989.1 3188788 3189963 R multidrug resistance efflux pump complement(3188788..3189963) Agrobacterium vitis S4 7388527 YP_002550776.1 CDS Avi_3838 NC_011989.1 3190215 3190907 D TetR family transcriptional regulator 3190215..3190907 Agrobacterium vitis S4 7388528 YP_002550777.1 CDS Avi_3839 NC_011989.1 3191046 3191810 D hypothetical protein 3191046..3191810 Agrobacterium vitis S4 7388529 YP_002550778.1 CDS Avi_3841 NC_011989.1 3191947 3192654 D putative role in sulfur assimilation; CysZ-like protein 3191947..3192654 Agrobacterium vitis S4 7388530 YP_002550779.1 CDS nth NC_011989.1 3192634 3193398 R endonuclease III complement(3192634..3193398) Agrobacterium vitis S4 7388531 YP_002550780.1 CDS Avi_3844 NC_011989.1 3193477 3193920 D hypothetical protein 3193477..3193920 Agrobacterium vitis S4 7388532 YP_002550781.1 CDS ada NC_011989.1 3194002 3194889 D methylated-DNA--protein- cysteinemethyltransferase 3194002..3194889 Agrobacterium vitis S4 7388533 YP_002550782.1 CDS Avi_3846 NC_011989.1 3195015 3195461 D hypothetical protein 3195015..3195461 Agrobacterium vitis S4 7388534 YP_002550783.1 CDS Avi_3848 NC_011989.1 3195670 3196662 D hypothetical protein 3195670..3196662 Agrobacterium vitis S4 7388535 YP_002550784.1 CDS Avi_3849 NC_011989.1 3196747 3197724 R transcriptional regulator complement(3196747..3197724) Agrobacterium vitis S4 7388536 YP_002550785.1 CDS tal NC_011989.1 3197936 3198892 D transaldolase B 3197936..3198892 Agrobacterium vitis S4 7388537 YP_002550786.1 CDS hflK NC_011989.1 3199154 3199747 R HFLK protein complement(3199154..3199747) Agrobacterium vitis S4 7388538 YP_002550787.1 CDS Avi_3854 NC_011989.1 3200048 3200953 D hypothetical protein 3200048..3200953 Agrobacterium vitis S4 7388539 YP_002550788.1 CDS Avi_3855 NC_011989.1 3201075 3202325 D hypothetical protein 3201075..3202325 Agrobacterium vitis S4 7388540 YP_002550789.1 CDS lysS NC_011989.1 3202419 3203915 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(3202419..3203915) Agrobacterium vitis S4 7388541 YP_002550790.1 CDS gltX NC_011989.1 3204019 3205473 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(3204019..3205473) Agrobacterium vitis S4 7388542 YP_002550791.1 CDS Avi_3860 NC_011989.1 3205860 3207620 R transporter complement(3205860..3207620) Agrobacterium vitis S4 7388543 YP_002550792.1 CDS Avi_3861 NC_011989.1 3207815 3209152 R TPR repeat protein complement(3207815..3209152) Agrobacterium vitis S4 7388544 YP_002550793.1 CDS Avi_3862 NC_011989.1 3209149 3210519 R secretion protein-like protein complement(3209149..3210519) Agrobacterium vitis S4 7388545 YP_002550794.1 CDS Avi_3863 NC_011989.1 3210491 3212701 R ABC transporter ATPase complement(3210491..3212701) Agrobacterium vitis S4 7388546 YP_002550795.1 CDS Avi_3864 NC_011989.1 3212981 3214183 D glycosyltransferase 3212981..3214183 Agrobacterium vitis S4 7388547 YP_002550796.1 CDS Avi_3865 NC_011989.1 3214167 3215678 R TPR repeat protein complement(3214167..3215678) Agrobacterium vitis S4 7388548 YP_002550797.1 CDS Avi_3866 NC_011989.1 3215675 3220708 R TPR repeat protein complement(3215675..3220708) Agrobacterium vitis S4 7388549 YP_002550798.1 CDS Avi_3867 NC_011989.1 3220890 3221279 R hypothetical protein complement(3220890..3221279) Agrobacterium vitis S4 7388550 YP_002550799.1 CDS Avi_3869 NC_011989.1 3221418 3226136 R Ca 2+ binding protein complement(3221418..3226136) Agrobacterium vitis S4 7388551 YP_002550800.1 CDS Avi_3870 NC_011989.1 3226300 3226938 R uncharacterized ABC-type transport system permease protein complement(3226300..3226938) Agrobacterium vitis S4 7388552 YP_002550801.1 CDS Avi_3871 NC_011989.1 3227049 3228902 R ABC transporter ATPase complement(3227049..3228902) Agrobacterium vitis S4 7388553 YP_002550802.1 CDS Avi_3872 NC_011989.1 3228982 3230145 R hippurate hydrolase complement(3228982..3230145) Agrobacterium vitis S4 7388554 YP_002550803.1 CDS Avi_3874 NC_011989.1 3230389 3232146 D ABC transporter substrate binding protein (oligopeptide) 3230389..3232146 Agrobacterium vitis S4 7388555 YP_002550804.1 CDS Avi_3875 NC_011989.1 3232495 3234201 D ABC transporter substrate binding protein (oligopeptide) 3232495..3234201 Agrobacterium vitis S4 7388556 YP_002550805.1 CDS Avi_3876 NC_011989.1 3234328 3235338 D peptide ABC transporter permease 3234328..3235338 Agrobacterium vitis S4 7388557 YP_002550806.1 CDS Avi_3878 NC_011989.1 3235331 3236248 D peptide ABC transporter permease 3235331..3236248 Agrobacterium vitis S4 7388558 YP_002550807.1 CDS Avi_3879 NC_011989.1 3236274 3237326 R ABC transporter complement(3236274..3237326) Agrobacterium vitis S4 7388559 YP_002550808.1 CDS Avi_3880 NC_011989.1 3237401 3240145 R ABC transporter ATPase complement(3237401..3240145) Agrobacterium vitis S4 7388560 YP_002550809.1 CDS Avi_3881 NC_011989.1 3240157 3241197 R HlyD family secretion protein complement(3240157..3241197) Agrobacterium vitis S4 7388561 YP_002550810.1 CDS Avi_3882 NC_011989.1 3241399 3242400 D hypothetical protein 3241399..3242400 Agrobacterium vitis S4 7388562 YP_002550811.1 CDS phnM NC_011989.1 3242513 3243679 D phosphonate metabolism protein PhnM 3242513..3243679 Agrobacterium vitis S4 7388563 YP_002550812.1 CDS dfpD NC_011989.1 3243683 3244435 R ABC transporter complement(3243683..3244435) Agrobacterium vitis S4 7388564 YP_002550813.1 CDS Avi_3885 NC_011989.1 3244432 3245265 R ABC transporter complement(3244432..3245265) Agrobacterium vitis S4 7388565 YP_002550814.1 CDS Avi_3886 NC_011989.1 3245262 3246167 R peptide ABC transporter permease complement(3245262..3246167) Agrobacterium vitis S4 7388566 YP_002550815.1 CDS Avi_3887 NC_011989.1 3246185 3247252 R peptide ABC transporter permease complement(3246185..3247252) Agrobacterium vitis S4 7388567 YP_002550816.1 CDS Avi_3888 NC_011989.1 3247268 3248920 R ABC transporter substrate binding protein (oligopeptide) complement(3247268..3248920) Agrobacterium vitis S4 7388568 YP_002550817.1 CDS Avi_3889 NC_011989.1 3248969 3250021 R dipeptidase complement(3248969..3250021) Agrobacterium vitis S4 7388569 YP_002550818.1 CDS kdgK NC_011989.1 3250266 3251180 R 2-dehydro-3-deoxygluconokinase complement(3250266..3251180) Agrobacterium vitis S4 7388570 YP_002550819.1 CDS Avi_3891 NC_011989.1 3251196 3251891 R GntR family transcriptional regulator complement(3251196..3251891) Agrobacterium vitis S4 7388571 YP_002550820.1 CDS Avi_3892 NC_011989.1 3252176 3253576 D catalyzes the interconversion of D-glucuronate to D-fructuronate or D-galacturonate to D-tagaturonate; functions in glucuronic and galacturonic metabolism; glucuronate isomerase 3252176..3253576 Agrobacterium vitis S4 7388572 YP_002550821.1 CDS kdgF NC_011989.1 3253964 3254305 D pectin degradation protein 3253964..3254305 Agrobacterium vitis S4 7388573 YP_002550822.1 CDS Avi_3894 NC_011989.1 3254325 3255146 D 4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; catalyzes the interconversion of 4-deoxy-L-threo-5-hexosulose uronate to 3-deoxy-D-glycero-2,5-hexodiulosonate; 5-keto-4-deoxyuronate isomerase 3254325..3255146 Agrobacterium vitis S4 7388574 YP_002550823.1 CDS kduD NC_011989.1 3255143 3255889 D 2-deoxy-D-gluconate 3-dehydrogenase 3255143..3255889 Agrobacterium vitis S4 7388575 YP_002550824.1 CDS uxuB NC_011989.1 3255867 3257336 D Altronate oxidoreductase 3255867..3257336 Agrobacterium vitis S4 7388576 YP_002550825.1 CDS uxuA NC_011989.1 3257333 3258526 D mannonate dehydratase 3257333..3258526 Agrobacterium vitis S4 7388577 YP_002550826.1 CDS uxaA NC_011989.1 3258519 3260051 D uronate isomerase 3258519..3260051 Agrobacterium vitis S4 7388578 YP_002550827.1 CDS pntB NC_011989.1 3260109 3261542 R NAD(P)+ transhydrogenase beta chain complement(3260109..3261542) Agrobacterium vitis S4 7388579 YP_002550828.1 CDS pntA NC_011989.1 3261559 3263136 R forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha complement(3261559..3263136) Agrobacterium vitis S4 7388580 YP_002550829.1 CDS gbpR NC_011989.1 3263435 3264367 R LysR family transcriptional regulator complement(3263435..3264367) Agrobacterium vitis S4 7388581 YP_002550830.1 CDS chvE NC_011989.1 3264594 3265658 D sugar binding protein 3264594..3265658 Agrobacterium vitis S4 7388582 YP_002550831.1 CDS gguA NC_011989.1 3265805 3267319 D ABC transporter nucleotide binding/ATPase (sugar) 3265805..3267319 Agrobacterium vitis S4 7388583 YP_002550832.1 CDS gguB NC_011989.1 3267319 3268518 D sugar ABC transporter permease 3267319..3268518 Agrobacterium vitis S4 7388584 YP_002550833.1 CDS gguC NC_011989.1 3268696 3269661 D hypothetical protein 3268696..3269661 Agrobacterium vitis S4 7388585 YP_002550834.1 CDS ilvD NC_011989.1 3269792 3271501 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 3269792..3271501 Agrobacterium vitis S4 7388586 YP_002550835.1 CDS Avi_3910 NC_011989.1 3271575 3272522 D dehydrogenase 3271575..3272522 Agrobacterium vitis S4 7388587 YP_002550836.1 CDS Avi_3912 NC_011989.1 3272692 3274206 D dehydrogenase 3272692..3274206 Agrobacterium vitis S4 7387924 YP_002550837.1 CDS dgoK NC_011989.1 3274309 3275163 D 2-dehydro-3-deoxygalactonokinase 3274309..3275163 Agrobacterium vitis S4 7387272 YP_002550838.1 CDS Avi_3915 NC_011989.1 3275179 3275826 D catalyzes the formation of D-glyceraldehyde 3-phosphate and pyruvate from 2-dehydro-3-deoxy-D-galactonate 6-phosphate; functions in galactonate metabolism; 2-dehydro-3-deoxy-6-phosphogalactonate aldolase 3275179..3275826 Agrobacterium vitis S4 7387273 YP_002550839.1 CDS Avi_3917 NC_011989.1 3275958 3276320 D hypothetical protein 3275958..3276320 Agrobacterium vitis S4 7387274 YP_002550840.1 CDS Avi_3918 NC_011989.1 3276324 3277181 R hypothetical protein complement(3276324..3277181) Agrobacterium vitis S4 7387275 YP_002550841.1 CDS Avi_3919 NC_011989.1 3277376 3278071 D GntR family transcriptional regulator 3277376..3278071 Agrobacterium vitis S4 7387276 YP_002550842.1 CDS Avi_3920 NC_011989.1 3278068 3279348 D cynate permease 3278068..3279348 Agrobacterium vitis S4 7387277 YP_002550843.1 CDS Avi_3921 NC_011989.1 3279601 3285120 D hypothetical protein 3279601..3285120 Agrobacterium vitis S4 7387278 YP_002550844.1 CDS pbpC NC_011989.1 3285117 3287204 D penicillin-binding protein 3285117..3287204 Agrobacterium vitis S4 7387279 YP_002550845.1 CDS mclA NC_011989.1 3287516 3290047 D methyl-accepting chemotaxis protein 3287516..3290047 Agrobacterium vitis S4 7387280 YP_002550846.1 CDS lspL NC_011989.1 3290207 3291226 D UDP-glucuronic acid epimerase 3290207..3291226 Agrobacterium vitis S4 7387281 YP_002550847.1 CDS redA NC_011989.1 3291366 3292466 R hypothetical protein complement(3291366..3292466) Agrobacterium vitis S4 7387282 YP_002550848.1 CDS redB NC_011989.1 3292579 3293814 R glucosyltransferase complement(3292579..3293814) Agrobacterium vitis S4 7387283 YP_002550849.1 CDS Avi_3927 NC_011989.1 3293819 3295027 R hypothetical protein complement(3293819..3295027) Agrobacterium vitis S4 7387284 YP_002550850.1 CDS Avi_3928 NC_011989.1 3295133 3296317 R peptide ABC transporter permease complement(3295133..3296317) Agrobacterium vitis S4 7387285 YP_002550851.1 CDS Avi_3929 NC_011989.1 3296314 3297312 R peptide ABC transporter permease complement(3296314..3297312) Agrobacterium vitis S4 7387286 YP_002550852.1 CDS Avi_3931 NC_011989.1 3297309 3299189 R ABC transporter substrate binding protein (oligopeptide) complement(3297309..3299189) Agrobacterium vitis S4 7387287 YP_002550853.1 CDS Avi_3932 NC_011989.1 3299228 3301114 R ABC transporter nucleotide binding/ATPase (oligopeptide) complement(3299228..3301114) Agrobacterium vitis S4 7387288 YP_002550854.1 CDS Avi_3933 NC_011989.1 3301431 3302270 D hypothetical protein 3301431..3302270 Agrobacterium vitis S4 7387289 YP_002550855.1 CDS Avi_3934 NC_011989.1 3302275 3303018 R hypothetical protein complement(3302275..3303018) Agrobacterium vitis S4 7387290 YP_002550856.1 CDS Avi_3935 NC_011989.1 3303011 3304111 R glycosyltransferase complement(3303011..3304111) Agrobacterium vitis S4 7387291 YP_002550857.1 CDS Avi_3939 NC_011989.1 3304162 3305679 D UDP-glucose/GDP-mannose dehydrogenase 3304162..3305679 Agrobacterium vitis S4 7387292 YP_002550858.1 CDS Avi_3940 NC_011989.1 3305684 3306166 D hypothetical protein 3305684..3306166 Agrobacterium vitis S4 7387293 YP_002550859.1 CDS Avi_3942 NC_011989.1 3306262 3306726 R cAMP-dependent protein kinase regulatory subunit complement(3306262..3306726) Agrobacterium vitis S4 7387294 YP_002550860.1 CDS Avi_3943 NC_011989.1 3306766 3309486 R ABC transporter ATPase complement(3306766..3309486) Agrobacterium vitis S4 7387295 YP_002550861.1 CDS Avi_3945 NC_011989.1 3309827 3310966 D ATP-dependent dsDNA exonuclease 3309827..3310966 Agrobacterium vitis S4 7387296 YP_002550862.1 CDS sbcC NC_011989.1 3310963 3314037 D exonuclease 3310963..3314037 Agrobacterium vitis S4 7387297 YP_002550863.1 CDS Avi_3947 NC_011989.1 3314185 3316044 R methyl-accepting chemotaxis protein complement(3314185..3316044) Agrobacterium vitis S4 7387298 YP_002550864.1 CDS Avi_3949 NC_011989.1 3323754 3325700 D hypothetical protein 3323754..3325700 Agrobacterium vitis S4 7387978 YP_002550865.1 CDS clpB NC_011989.1 3325783 3328389 R ATP-dependent Clp protease ATP-binding subunit complement(3325783..3328389) Agrobacterium vitis S4 7387300 YP_002550866.1 CDS Avi_3953 NC_011989.1 3328720 3329604 R hypothetical protein complement(3328720..3329604) Agrobacterium vitis S4 7387301 YP_002550867.1 CDS hemK NC_011989.1 3330031 3330912 R protoporphyrinogen oxidase complement(3330031..3330912) Agrobacterium vitis S4 7387302 YP_002550868.1 CDS prfA NC_011989.1 3330909 3331988 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(3330909..3331988) Agrobacterium vitis S4 7387303 YP_002550869.1 CDS ptsI NC_011989.1 3332016 3334280 R phosphoenolpyruvate-protein phosphotransferase complement(3332016..3334280) Agrobacterium vitis S4 7387304 YP_002550870.1 CDS lysC NC_011989.1 3334366 3335640 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase complement(3334366..3335640) Agrobacterium vitis S4 7387305 YP_002550871.1 CDS lpiA NC_011989.1 3336147 3338759 D Protein regulated by acid pH 3336147..3338759 Agrobacterium vitis S4 7387306 YP_002550872.1 CDS acvB NC_011989.1 3338756 3340183 D virulance and acid tolerance protein 3338756..3340183 Agrobacterium vitis S4 7387307 YP_002550873.1 CDS Avi_3964 NC_011989.1 3340323 3341186 R hypothetical protein complement(3340323..3341186) Agrobacterium vitis S4 7387308 YP_002550874.1 CDS ubiG NC_011989.1 3341526 3342308 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 3341526..3342308 Agrobacterium vitis S4 7387309 YP_002550875.1 CDS Avi_3966 NC_011989.1 3342315 3342896 R hypothetical protein complement(3342315..3342896) Agrobacterium vitis S4 7387310 YP_002550876.1 CDS Avi_3967 NC_011989.1 3342899 3343327 R hypothetical protein complement(3342899..3343327) Agrobacterium vitis S4 7387311 YP_002550877.1 CDS Avi_3968 NC_011989.1 3343324 3344181 R amidohydrolase complement(3343324..3344181) Agrobacterium vitis S4 7387312 YP_002550878.1 CDS grxC NC_011989.1 3344191 3344445 R glutaredoxin complement(3344191..3344445) Agrobacterium vitis S4 7387313 YP_002550879.1 CDS comF NC_011989.1 3344497 3345207 R competence protein F complement(3344497..3345207) Agrobacterium vitis S4 7387314 YP_002550880.1 CDS Avi_3971 NC_011989.1 3345570 3346439 D methyltransferase 3345570..3346439 Agrobacterium vitis S4 7387315 YP_002550881.1 CDS pilA NC_011989.1 3346483 3346671 R fimbriae associated protein complement(3346483..3346671) Agrobacterium vitis S4 7387316 YP_002550882.1 CDS Avi_3974 NC_011989.1 3346804 3347124 R hypothetical protein complement(3346804..3347124) Agrobacterium vitis S4 7387317 YP_002550883.1 CDS Avi_3976 NC_011989.1 3347633 3348040 R NTP pyrophosphohydrolase MutT family complement(3347633..3348040) Agrobacterium vitis S4 7387318 YP_002550884.1 CDS Avi_3977 NC_011989.1 3348037 3348840 R acetyltransferase complement(3348037..3348840) Agrobacterium vitis S4 7387319 YP_002550885.1 CDS argJ NC_011989.1 3348840 3350081 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase complement(3348840..3350081) Agrobacterium vitis S4 7387320 YP_002550886.1 CDS ppiD NC_011989.1 3350170 3351045 R peptidyl-prolyl cis-trans isomerase complement(3350170..3351045) Agrobacterium vitis S4 7387321 YP_002550887.1 CDS secA NC_011989.1 3351308 3354007 D preprotein translocase SECA subunit 3351308..3354007 Agrobacterium vitis S4 7387322 YP_002550888.1 CDS Avi_3983 NC_011989.1 3354156 3355559 D polysaccharide biosynthesis associated protein 3354156..3355559 Agrobacterium vitis S4 7387323 YP_002550889.1 CDS Avi_3984 NC_011989.1 3355580 3356863 D hypothetical protein 3355580..3356863 Agrobacterium vitis S4 7387324 YP_002550890.1 CDS Avi_3985 NC_011989.1 3356877 3358532 R AMP-(fatty) acid ligase complement(3356877..3358532) Agrobacterium vitis S4 7387325 YP_002550891.1 CDS pleD NC_011989.1 3359601 3360491 D two component response regulator 3359601..3360491 Agrobacterium vitis S4 7387326 YP_002550892.1 CDS Avi_3989 NC_011989.1 3360864 3361361 R IS3 family transposase complement(3360864..3361361) Agrobacterium vitis S4 7387327 YP_002550893.1 CDS kka NC_011989.1 3361958 3362857 R aminoglycoside phosphotransferase complement(3361958..3362857) Agrobacterium vitis S4 7387328 YP_002550894.1 CDS Avi_3992 NC_011989.1 3363572 3364939 R hypothetical protein complement(3363572..3364939) Agrobacterium vitis S4 7387329 YP_002550895.1 CDS Avi_3993 NC_011989.1 3365453 3366550 R oxidoreductase complement(3365453..3366550) Agrobacterium vitis S4 7387330 YP_002550896.1 CDS Avi_3994 NC_011989.1 3366660 3367553 D LysR family transcriptional regulator 3366660..3367553 Agrobacterium vitis S4 7387331 YP_002550897.1 CDS Avi_3996 NC_011989.1 3368285 3368764 D transcriptional regulator protein 3368285..3368764 Agrobacterium vitis S4 7387332 YP_002550898.1 CDS Avi_3998 NC_011989.1 3369474 3370064 D hypothetical protein 3369474..3370064 Agrobacterium vitis S4 7387168 YP_002550899.1 CDS Avi_4000 NC_011989.1 3370088 3370600 D hypothetical protein 3370088..3370600 Agrobacterium vitis S4 7387334 YP_002550900.1 CDS Avi_4001 NC_011989.1 3370597 3371154 R hypothetical protein complement(3370597..3371154) Agrobacterium vitis S4 7387335 YP_002550901.1 CDS alkA NC_011989.1 3371253 3371906 R DNA-3-methyladenine glycosidase II complement(3371253..3371906) Agrobacterium vitis S4 7387336 YP_002550902.1 CDS gltX NC_011989.1 3371945 3372847 D glutamyl-tRNA synthetase 3371945..3372847 Agrobacterium vitis S4 7387337 YP_002550903.1 CDS Avi_4005 NC_011989.1 3372806 3373702 R ribonuclease transmembrane protein complement(3372806..3373702) Agrobacterium vitis S4 7387338 YP_002550904.1 CDS Avi_4006 NC_011989.1 3373813 3374646 D short chain dehydrogenase 3373813..3374646 Agrobacterium vitis S4 7387339 YP_002550905.1 CDS Avi_4007 NC_011989.1 3374683 3374880 D hypothetical protein 3374683..3374880 Agrobacterium vitis S4 7387340 YP_002550906.1 CDS Avi_4008 NC_011989.1 3375011 3375589 D hypothetical protein 3375011..3375589 Agrobacterium vitis S4 7387341 YP_002550907.1 CDS etfB NC_011989.1 3375990 3376739 D electron transfer flavoprotein beta subunit 3375990..3376739 Agrobacterium vitis S4 7387342 YP_002550908.1 CDS etfA NC_011989.1 3376764 3377693 D electron transfer flavoprotein alpha subunit 3376764..3377693 Agrobacterium vitis S4 7387343 YP_002550909.1 CDS mcpG NC_011989.1 3377786 3380056 R methyl-accepting chemotaxis protein complement(3377786..3380056) Agrobacterium vitis S4 7387344 YP_002550910.1 CDS hbdA NC_011989.1 3380694 3381566 D converts (S)-3-hydroxybutanoyl-CoA to 3-acetoacetyl-CoA; 3-hydroxybutyryl-CoA dehydrogenase 3380694..3381566 Agrobacterium vitis S4 7387345 YP_002550911.1 CDS dsbE NC_011989.1 3381771 3382433 R thiol:disulfide interchange protein complement(3381771..3382433) Agrobacterium vitis S4 7387346 YP_002550912.1 CDS argH NC_011989.1 3382458 3383861 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 3382458..3383861 Agrobacterium vitis S4 7387347 YP_002550913.1 CDS Avi_4018 NC_011989.1 3383956 3384147 D hypothetical protein 3383956..3384147 Agrobacterium vitis S4 7387348 YP_002550914.1 CDS lysA NC_011989.1 3384158 3385429 D diaminopimelate decarboxylase 3384158..3385429 Agrobacterium vitis S4 7387349 YP_002550915.1 CDS Avi_4021 NC_011989.1 3385594 3388338 D hypothetical protein 3385594..3388338 Agrobacterium vitis S4 7387350 YP_002550916.1 CDS Avi_4023 NC_011989.1 3388446 3388805 R two component response regulator complement(3388446..3388805) Agrobacterium vitis S4 7387351 YP_002550917.1 CDS hpt NC_011989.1 3389138 3389686 R hypoxanthine phosphoribosyltransferase complement(3389138..3389686) Agrobacterium vitis S4 7387352 YP_002550918.1 CDS Avi_4026 NC_011989.1 3389755 3390444 R hypothetical protein complement(3389755..3390444) Agrobacterium vitis S4 7387353 YP_002550919.1 CDS ftsE NC_011989.1 3390762 3391385 D cell division ATP-binding protein 3390762..3391385 Agrobacterium vitis S4 7388837 YP_002550920.1 CDS ftsX NC_011989.1 3391504 3392454 D cell division protein 3391504..3392454 Agrobacterium vitis S4 7388839 YP_002550921.1 CDS Avi_4029 NC_011989.1 3392498 3393238 D hypothetical protein 3392498..3393238 Agrobacterium vitis S4 7388840 YP_002550922.1 CDS plsC NC_011989.1 3393210 3394121 D 1-acyl-sn-glycerol-3-phosphate acyltransferase 3393210..3394121 Agrobacterium vitis S4 7388841 YP_002550923.1 CDS Avi_4031 NC_011989.1 3394116 3394655 R transporter complement(3394116..3394655) Agrobacterium vitis S4 7388842 YP_002550924.1 CDS Avi_4032 NC_011989.1 3394834 3395841 D hypothetical protein 3394834..3395841 Agrobacterium vitis S4 7388843 YP_002550925.1 CDS tyrC NC_011989.1 3395858 3396793 R dual function enzyme catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate and the formation of tyrosine from arogenate; cyclohexadienyl dehydrogenase complement(3395858..3396793) Agrobacterium vitis S4 7388844 YP_002550926.1 CDS hisC NC_011989.1 3396793 3397887 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(3396793..3397887) Agrobacterium vitis S4 7388845 YP_002550927.1 CDS Avi_4035 NC_011989.1 3397971 3398732 R hypothetical protein complement(3397971..3398732) Agrobacterium vitis S4 7388846 YP_002550928.1 CDS gloB NC_011989.1 3398836 3399606 D glyoxalase II 3398836..3399606 Agrobacterium vitis S4 7388847 YP_002550929.1 CDS Avi_4037 NC_011989.1 3399606 3400037 D hypothetical protein 3399606..3400037 Agrobacterium vitis S4 7388848 YP_002550930.1 CDS Avi_4038 NC_011989.1 3400142 3400708 D cytochrome B561 protein 3400142..3400708 Agrobacterium vitis S4 7388849 YP_002550931.1 CDS Avi_4039 NC_011989.1 3400712 3401596 R Premeases of the drub/metabolic transporter protein complement(3400712..3401596) Agrobacterium vitis S4 7388850 YP_002550932.1 CDS Avi_4040 NC_011989.1 3401622 3402413 R hypothetical protein complement(3401622..3402413) Agrobacterium vitis S4 7388851 YP_002550933.1 CDS rpmB NC_011989.1 3402637 3402927 D required for 70S ribosome assembly; 50S ribosomal protein L28 3402637..3402927 Agrobacterium vitis S4 7388852 YP_002550934.1 CDS Avi_4043 NC_011989.1 3403108 3403740 D hypothetical protein 3403108..3403740 Agrobacterium vitis S4 7388853 YP_002550935.1 CDS Avi_4044 NC_011989.1 3403752 3404771 R hypothetical protein complement(3403752..3404771) Agrobacterium vitis S4 7388854 YP_002550936.1 CDS cobT NC_011989.1 3404768 3406669 R cobaltochelatase CobT subunit complement(3404768..3406669) Agrobacterium vitis S4 7388855 YP_002550937.1 CDS cobS NC_011989.1 3406687 3407679 R cobaltochelatase CobS subunit complement(3406687..3407679) Agrobacterium vitis S4 7388856 YP_002550938.1 CDS dnaJ NC_011989.1 3407769 3408440 R molecular chaperone DnaJ family complement(3407769..3408440) Agrobacterium vitis S4 7388857 YP_002550939.1 CDS bolA NC_011989.1 3408515 3408811 D stress induced morphogen 3408515..3408811 Agrobacterium vitis S4 7388858 YP_002550940.1 CDS aroB NC_011989.1 3408814 3409959 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(3408814..3409959) Agrobacterium vitis S4 7388859 YP_002550941.1 CDS aroK NC_011989.1 3409956 3410549 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(3409956..3410549) Agrobacterium vitis S4 7388860 YP_002550942.1 CDS Avi_4054 NC_011989.1 3410896 3411048 D hypothetical signal peptide protein 3410896..3411048 Agrobacterium vitis S4 7388861 YP_002550943.1 CDS xerD NC_011989.1 3411091 3412089 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 3411091..3412089 Agrobacterium vitis S4 7388862 YP_002550944.1 CDS accA NC_011989.1 3412294 3413250 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha 3412294..3413250 Agrobacterium vitis S4 7388863 YP_002550945.1 CDS Avi_4058 NC_011989.1 3413603 3414940 D hypothetical protein 3413603..3414940 Agrobacterium vitis S4 7388864 YP_002550946.1 CDS Avi_4059 NC_011989.1 3414916 3415188 D hypothetical protein 3414916..3415188 Agrobacterium vitis S4 7388865 YP_002550947.1 CDS Avi_4060 NC_011989.1 3415213 3416400 R hypothetical protein complement(3415213..3416400) Agrobacterium vitis S4 7388866 YP_002550948.1 CDS dac NC_011989.1 3416536 3417636 R penicillin-binding protein complement(3416536..3417636) Agrobacterium vitis S4 7388867 YP_002550949.1 CDS Avi_4062 NC_011989.1 3417813 3418976 D amidohydrolase 3417813..3418976 Agrobacterium vitis S4 7388868 YP_002550950.1 CDS Avi_4064 NC_011989.1 3419362 3420411 D permease 3419362..3420411 Agrobacterium vitis S4 7387165 YP_002550951.1 CDS agrR NC_011989.1 3420496 3421251 R transcriptional regulator LuxR family complement(3420496..3421251) Agrobacterium vitis S4 7388870 YP_002550952.1 CDS luxR NC_011989.1 3421387 3422133 R transcriptional regulator LuxR family complement(3421387..3422133) Agrobacterium vitis S4 7388871 YP_002550953.1 CDS fliF NC_011989.1 3422372 3424078 R the MS-ring anchors the flagellum to the cytoplasmic membrane; part of the flagellar basal body which consists of four rings L, P, S, and M mounted on a central rod; flagellar MS-ring protein complement(3422372..3424078) Agrobacterium vitis S4 7388872 YP_002550954.1 CDS Avi_4070 NC_011989.1 3424339 3424695 R hypothetical protein complement(3424339..3424695) Agrobacterium vitis S4 7388873 YP_002550955.1 CDS cheD NC_011989.1 3425004 3425558 R catalyzes the conversion of glutamine residues to glutamate on methyl-accepting chemotaxis receptors; chemoreceptor glutamine deamidase CheD complement(3425004..3425558) Agrobacterium vitis S4 7388874 YP_002550956.1 CDS cheY NC_011989.1 3425555 3425944 R chemotaxis receiver protein complement(3425555..3425944) Agrobacterium vitis S4 7388875 YP_002550957.1 CDS cheB NC_011989.1 3425944 3426981 R regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase complement(3425944..3426981) Agrobacterium vitis S4 7388876 YP_002550958.1 CDS cheR NC_011989.1 3426978 3427886 R chemotaxis methyltransferase complement(3426978..3427886) Agrobacterium vitis S4 7388877 YP_002550959.1 CDS cheW NC_011989.1 3427883 3428350 R chemotaxis protein complement(3427883..3428350) Agrobacterium vitis S4 7388878 YP_002550960.1 CDS cheA NC_011989.1 3428355 3430343 R Chemotaxis protein histidine kinase complement(3428355..3430343) Agrobacterium vitis S4 7388879 YP_002550961.1 CDS cheY NC_011989.1 3430623 3430988 R chemotaxis receiver protein complement(3430623..3430988) Agrobacterium vitis S4 7388880 YP_002550962.1 CDS Avi_4080 NC_011989.1 3430985 3431317 R hypothetical protein complement(3430985..3431317) Agrobacterium vitis S4 7388881 YP_002550963.1 CDS Avi_4081 NC_011989.1 3431418 3433088 R methyl-accepting chemotaxis protein complement(3431418..3433088) Agrobacterium vitis S4 7388882 YP_002550964.1 CDS dxr NC_011989.1 3433799 3434992 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 3433799..3434992 Agrobacterium vitis S4 7388883 YP_002550965.1 CDS Avi_4084 NC_011989.1 3435059 3436291 R esterase (beta-lactamase family) complement(3435059..3436291) Agrobacterium vitis S4 7388884 YP_002550966.1 CDS hemA NC_011989.1 3436369 3437583 R catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase complement(3436369..3437583) Agrobacterium vitis S4 7388885 YP_002550967.1 CDS Avi_4087 NC_011989.1 3438272 3438535 D hypothetical protein 3438272..3438535 Agrobacterium vitis S4 7388886 YP_002550968.1 CDS Avi_4088 NC_011989.1 3438803 3440665 D hypothetical protein 3438803..3440665 Agrobacterium vitis S4 7388887 YP_002550969.1 CDS Avi_4089 NC_011989.1 3440709 3444923 D hypothetical protein 3440709..3444923 Agrobacterium vitis S4 7388888 YP_002550970.1 CDS mcpA NC_011989.1 3445543 3447321 D methyl-accepting chemotaxis protein 3445543..3447321 Agrobacterium vitis S4 7388889 YP_002550971.1 CDS cheW NC_011989.1 3447435 3447914 D chemotaxis protein 3447435..3447914 Agrobacterium vitis S4 7388890 YP_002550972.1 CDS Avi_4093 NC_011989.1 3448046 3449704 R MFS permease complement(3448046..3449704) Agrobacterium vitis S4 7388891 YP_002550973.1 CDS fdsD NC_011989.1 3449985 3450257 R NAD-dependent formate dehydrogenase delta subunit complement(3449985..3450257) Agrobacterium vitis S4 7388892 YP_002550974.1 CDS fdhD NC_011989.1 3450247 3451071 R formate dehydrogenase family accessory protein FdhD complement(3450247..3451071) Agrobacterium vitis S4 7388893 YP_002550975.1 CDS fdhA NC_011989.1 3451115 3453994 R formate dehydrogenase, alpha subunit complement(3451115..3453994) Agrobacterium vitis S4 7388894 YP_002550976.1 CDS nuoF NC_011989.1 3454000 3455556 R NADH dehydrogenase I chain F complement(3454000..3455556) Agrobacterium vitis S4 7388895 YP_002550977.1 CDS nuoE NC_011989.1 3455565 3456044 R catalyzes the oxidation of formate to carbon dioxide and hydrogen using NAD or NADP as the acceptor; formate dehydrogenase subunit gamma complement(3455565..3456044) Agrobacterium vitis S4 7388896 YP_002550978.1 CDS Avi_4101 NC_011989.1 3456137 3457072 R LysR family transcriptional regulator complement(3456137..3457072) Agrobacterium vitis S4 7388897 YP_002550979.1 CDS Avi_4102 NC_011989.1 3457150 3457422 R transcriptional regulator ArsR family complement(3457150..3457422) Agrobacterium vitis S4 7388898 YP_002550980.1 CDS mdh NC_011989.1 3457595 3458527 R lactate dehydrogenase complement(3457595..3458527) Agrobacterium vitis S4 7388899 YP_002550981.1 CDS atpC NC_011989.1 3459350 3459757 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(3459350..3459757) Agrobacterium vitis S4 7388900 YP_002550982.1 CDS atpD NC_011989.1 3459826 3461283 R ATP synthase F1, beta subunit complement(3459826..3461283) Agrobacterium vitis S4 7388901 YP_002550983.1 CDS atpG NC_011989.1 3461308 3462189 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(3461308..3462189) Agrobacterium vitis S4 7388902 YP_002550984.1 CDS atpA NC_011989.1 3462220 3463746 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(3462220..3463746) Agrobacterium vitis S4 7388903 YP_002550985.1 CDS atpH NC_011989.1 3463746 3464327 R Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta complement(3463746..3464327) Agrobacterium vitis S4 7388904 YP_002550986.1 CDS Avi_4111 NC_011989.1 3464579 3464974 R hypothetical protein complement(3464579..3464974) Agrobacterium vitis S4 7388905 YP_002550987.1 CDS priA NC_011989.1 3465167 3467386 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(3465167..3467386) Agrobacterium vitis S4 7388906 YP_002550988.1 CDS Avi_4113 NC_011989.1 3467486 3469822 R methyl-accepting chemotaxis protein complement(3467486..3469822) Agrobacterium vitis S4 7388907 YP_002550989.1 CDS xerC NC_011989.1 3470135 3471103 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 3470135..3471103 Agrobacterium vitis S4 7388908 YP_002550990.1 CDS Avi_4115 NC_011989.1 3471198 3472313 D hypothetical protein 3471198..3472313 Agrobacterium vitis S4 7388909 YP_002550991.1 CDS lpdA NC_011989.1 3472463 3473869 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(3472463..3473869) Agrobacterium vitis S4 7388910 YP_002550992.1 CDS rhtB NC_011989.1 3473979 3474620 R RhtB family transporter complement(3473979..3474620) Agrobacterium vitis S4 7388911 YP_002550993.1 CDS Avi_4119 NC_011989.1 3474654 3475073 R hypothetical protein complement(3474654..3475073) Agrobacterium vitis S4 7388912 YP_002550994.1 CDS sucB NC_011989.1 3475181 3476413 R component of 2-oxoglutarate dehydrogenase complex; catalyzes the transfer of succinyl coenzyme A to form succinyl CoA as part of the conversion of 2-oxoglutarate to succinyl-CoA; dihydrolipoamide succinyltransferase complement(3475181..3476413) Agrobacterium vitis S4 7388913 YP_002550995.1 CDS sucA NC_011989.1 3476471 3479467 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(3476471..3479467) Agrobacterium vitis S4 7388914 YP_002550996.1 CDS sucD NC_011989.1 3479640 3480542 R Catalyzes the only substrate-level phosphorylation in the TCA cycle; succinyl-CoA synthetase subunit alpha complement(3479640..3480542) Agrobacterium vitis S4 7388915 YP_002550997.1 CDS Avi_4126 NC_011989.1 3480542 3480922 R hypothetical protein complement(3480542..3480922) Agrobacterium vitis S4 7388916 YP_002550998.1 CDS sucC NC_011989.1 3480927 3482123 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(3480927..3482123) Agrobacterium vitis S4 7388917 YP_002550999.1 CDS mdh NC_011989.1 3482247 3483209 R Catalyzes the reversible oxidation of malate to oxaloacetate; malate dehydrogenase complement(3482247..3483209) Agrobacterium vitis S4 7388918 YP_002551000.1 CDS Avi_4130 NC_011989.1 3483389 3484552 R hypothetical protein complement(3483389..3484552) Agrobacterium vitis S4 7388919 YP_002551001.1 CDS Avi_4132 NC_011989.1 3484636 3485148 R hypothetical protein complement(3484636..3485148) Agrobacterium vitis S4 7388920 YP_002551002.1 CDS sdhB NC_011989.1 3485539 3486318 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit complement(3485539..3486318) Agrobacterium vitis S4 7388672 YP_002551003.1 CDS sdhA NC_011989.1 3486334 3488190 R part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit complement(3486334..3488190) Agrobacterium vitis S4 7386912 YP_002551004.1 CDS sdhD NC_011989.1 3488197 3488577 R succinate dehydrogenase hydrophobic membrane anchor complement(3488197..3488577) Agrobacterium vitis S4 7386913 YP_002551005.1 CDS sdhC NC_011989.1 3488590 3488982 R succinate dehydrogenase cytochrome B-556 subunit complement(3488590..3488982) Agrobacterium vitis S4 7386914 YP_002551006.1 CDS Avi_4138 NC_011989.1 3489277 3489636 D hypothetical protein 3489277..3489636 Agrobacterium vitis S4 7386915 YP_002551007.1 CDS Avi_4139 NC_011989.1 3489651 3490310 R hypothetical protein complement(3489651..3490310) Agrobacterium vitis S4 7386916 YP_002551008.1 CDS Avi_4141 NC_011989.1 3490307 3490738 R hypothetical protein complement(3490307..3490738) Agrobacterium vitis S4 7386917 YP_002551009.1 CDS Avi_4142 NC_011989.1 3490744 3491037 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein complement(3490744..3491037) Agrobacterium vitis S4 7386918 YP_002551010.1 CDS gpsA NC_011989.1 3491056 3492045 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(3491056..3492045) Agrobacterium vitis S4 7386919 YP_002551011.1 CDS gcp NC_011989.1 3492042 3493139 R in most organisms, only the N-terminal domain is present in a single polypeptide; in some archaea this domain is fused to a kinase domain; this gene is essential for growth in Escherichia coli and Bacillus subtilis; the secreted glycoprotease from Pasteurella haemolytica showed specificity for O-sialoglycosylated proteins; the Pyrococcus structure shows DNA-binding properties, iron-binding, ATP-binding, and AP endonuclease activity; putative DNA-binding/iron metalloprotein/AP endonuclease complement(3492042..3493139) Agrobacterium vitis S4 7386920 YP_002551012.1 CDS hemC NC_011989.1 3493225 3494154 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 3493225..3494154 Agrobacterium vitis S4 7386921 YP_002551013.1 CDS Avi_4146 NC_011989.1 3494159 3494875 D catalyzes the formation of uroporphyrinogen-III from hydroxymethylbilane; uroporphyrinogen-III synthase 3494159..3494875 Agrobacterium vitis S4 7386922 YP_002551014.1 CDS Avi_4147 NC_011989.1 3494970 3496355 D hypothetical protein 3494970..3496355 Agrobacterium vitis S4 7386923 YP_002551015.1 CDS Avi_4148 NC_011989.1 3496361 3497941 D hypothetical protein 3496361..3497941 Agrobacterium vitis S4 7386924 YP_002551016.1 CDS Avi_4149 NC_011989.1 3497951 3498460 D hypothetical protein 3497951..3498460 Agrobacterium vitis S4 7386925 YP_002551017.1 CDS guaA NC_011989.1 3498453 3499217 D Catalyzes the transfer of the ammonia group from glutamine to a new carbon-nitrogen group; glutamine amidotransferase 3498453..3499217 Agrobacterium vitis S4 7386926 YP_002551018.1 CDS Avi_4151 NC_011989.1 3499224 3500456 R MFS permease complement(3499224..3500456) Agrobacterium vitis S4 7386927 YP_002551019.1 CDS Avi_4152 NC_011989.1 3500594 3500884 D hypothetical protein 3500594..3500884 Agrobacterium vitis S4 7386928 YP_002551020.1 CDS Avi_4153 NC_011989.1 3500881 3501195 D hypothetical protein 3500881..3501195 Agrobacterium vitis S4 7386929 YP_002551021.1 CDS ppa NC_011989.1 3501202 3501735 R catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase complement(3501202..3501735) Agrobacterium vitis S4 7386930 YP_002551022.1 CDS Avi_4155 NC_011989.1 3501870 3502376 R acetyltransferase complement(3501870..3502376) Agrobacterium vitis S4 7386931 YP_002551023.1 CDS typA NC_011989.1 3502624 3504489 R GTP-binding tyrosin phosphorylated protein complement(3502624..3504489) Agrobacterium vitis S4 7386932 YP_002551024.1 CDS Avi_4157 NC_011989.1 3504613 3506193 R secreted alkaline phosphatase complement(3504613..3506193) Agrobacterium vitis S4 7386933 YP_002551025.1 CDS dcp NC_011989.1 3506323 3508407 R peptidyl-dipeptidase complement(3506323..3508407) Agrobacterium vitis S4 7386934 YP_002551026.1 CDS Avi_4159 NC_011989.1 3508655 3509833 D MFS permease 3508655..3509833 Agrobacterium vitis S4 7386935 YP_002551027.1 CDS argG NC_011989.1 3509880 3511109 R catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase complement(3509880..3511109) Agrobacterium vitis S4 7386936 YP_002551028.1 CDS Avi_4162 NC_011989.1 3511433 3512287 D oxidoreductase 3511433..3512287 Agrobacterium vitis S4 7386937 YP_002551029.1 CDS Avi_4163 NC_011989.1 3512425 3513240 D hypothetical protein 3512425..3513240 Agrobacterium vitis S4 7386938 YP_002551030.1 CDS rhtB NC_011989.1 3513322 3513963 D RhtB family transporter 3513322..3513963 Agrobacterium vitis S4 7386939 YP_002551031.1 CDS Avi_4167 NC_011989.1 3514095 3514319 R Amino acid transporter protein complement(3514095..3514319) Agrobacterium vitis S4 7386940 YP_002551032.1 CDS Avi_4168 NC_011989.1 3514334 3515566 R Fe-S-cluster redox protein complement(3514334..3515566) Agrobacterium vitis S4 7386941 YP_002551033.1 CDS Avi_4170 NC_011989.1 3515811 3516320 R hypothetical protein complement(3515811..3516320) Agrobacterium vitis S4 7386942 YP_002551034.1 CDS Avi_4172 NC_011989.1 3516602 3517042 R hypothetical protein complement(3516602..3517042) Agrobacterium vitis S4 7386943 YP_002551035.1 CDS Avi_4174 NC_011989.1 3517110 3517412 R 4a-hydroxytetrahydrobiopterin dehydratase complement(3517110..3517412) Agrobacterium vitis S4 7386944 YP_002551036.1 CDS Avi_4176 NC_011989.1 3517528 3518115 R 2'-5' RNA ligase complement(3517528..3518115) Agrobacterium vitis S4 7386945 YP_002551037.1 CDS Avi_4178 NC_011989.1 3518182 3518949 R esterase complement(3518182..3518949) Agrobacterium vitis S4 7386946 YP_002551038.1 CDS Avi_4180 NC_011989.1 3519126 3519761 D ABC transporter ATPase 3519126..3519761 Agrobacterium vitis S4 7386947 YP_002551039.1 CDS Avi_4181 NC_011989.1 3519758 3522304 D hypothetical protein 3519758..3522304 Agrobacterium vitis S4 7386948 YP_002551040.1 CDS Avi_4182 NC_011989.1 3522493 3523263 D hypothetical protein 3522493..3523263 Agrobacterium vitis S4 7386949 YP_002551041.1 CDS Avi_4184 NC_011989.1 3523318 3523947 D acetyltransferase 3523318..3523947 Agrobacterium vitis S4 7386950 YP_002551042.1 CDS Avi_4185 NC_011989.1 3523955 3524374 R hypothetical protein complement(3523955..3524374) Agrobacterium vitis S4 7386951 YP_002551043.1 CDS Avi_4186 NC_011989.1 3524705 3525493 R hypothetical protein complement(3524705..3525493) Agrobacterium vitis S4 7386952 YP_002551044.1 CDS acnA NC_011989.1 3525898 3528591 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(3525898..3528591) Agrobacterium vitis S4 7386953 YP_002551045.1 CDS ccmA NC_011989.1 3528843 3529508 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 3528843..3529508 Agrobacterium vitis S4 7386954 YP_002551046.1 CDS ccmB NC_011989.1 3529505 3530164 D heme exporter protein CcmB 3529505..3530164 Agrobacterium vitis S4 7386955 YP_002551047.1 CDS ccmC NC_011989.1 3530233 3531015 D heme ABC transporter permease 3530233..3531015 Agrobacterium vitis S4 7386956 YP_002551048.1 CDS Avi_4192 NC_011989.1 3531012 3531182 D hypothetical protein 3531012..3531182 Agrobacterium vitis S4 7386957 YP_002551049.1 CDS ccmG NC_011989.1 3531182 3531808 D thiol:disulfide interchange protein 3531182..3531808 Agrobacterium vitis S4 7386958 YP_002551050.1 CDS Avi_4194 NC_011989.1 3531783 3532373 R hypothetical protein complement(3531783..3532373) Agrobacterium vitis S4 7386959 YP_002551051.1 CDS ispZ NC_011989.1 3532370 3533020 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(3532370..3533020) Agrobacterium vitis S4 7386960 YP_002551052.1 CDS fstY NC_011989.1 3533094 3534458 R cell division particle complement(3533094..3534458) Agrobacterium vitis S4 7386961 YP_002551053.1 CDS Avi_4197 NC_011989.1 3534481 3535755 R hypothetical protein complement(3534481..3535755) Agrobacterium vitis S4 7386962 YP_002551054.1 CDS dapF NC_011989.1 3535752 3536663 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(3535752..3536663) Agrobacterium vitis S4 7386963 YP_002551055.1 CDS Avi_4200 NC_011989.1 3536735 3537730 R hypothetical protein complement(3536735..3537730) Agrobacterium vitis S4 7386964 YP_002551056.1 CDS Avi_4202 NC_011989.1 3537791 3538441 R hypothetical protein complement(3537791..3538441) Agrobacterium vitis S4 7386965 YP_002551057.1 CDS ffh NC_011989.1 3538680 3540260 D signal recognition particle protein 3538680..3540260 Agrobacterium vitis S4 7386966 YP_002551058.1 CDS tyrA NC_011989.1 3540273 3540605 D catalyzes the interconversion of chorismate to prephenate; chorismate mutase 3540273..3540605 Agrobacterium vitis S4 7386967 YP_002551059.1 CDS rpsP NC_011989.1 3540670 3541041 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 3540670..3541041 Agrobacterium vitis S4 7386968 YP_002551060.1 CDS rimM NC_011989.1 3541073 3541738 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 3541073..3541738 Agrobacterium vitis S4 7386969 YP_002551061.1 CDS trmD NC_011989.1 3541710 3542459 D tRNA (guanine-N1)-methyltransferase 3541710..3542459 Agrobacterium vitis S4 7386970 YP_002551062.1 CDS Avi_4209 NC_011989.1 3542441 3543184 R hypothetical protein complement(3542441..3543184) Agrobacterium vitis S4 7386971 YP_002551063.1 CDS rplS NC_011989.1 3543459 3544001 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 3543459..3544001 Agrobacterium vitis S4 7386972 YP_002551064.1 CDS Avi_4212 NC_011989.1 3544225 3544629 D hypothetical protein 3544225..3544629 Agrobacterium vitis S4 7386973 YP_002551065.1 CDS Avi_4213 NC_011989.1 3544867 3546279 D integral membrane protein 3544867..3546279 Agrobacterium vitis S4 7386974 YP_002551066.1 CDS Avi_4214 NC_011989.1 3546344 3546721 D Cu resistance protein 3546344..3546721 Agrobacterium vitis S4 7386975 YP_002551067.1 CDS Avi_4216 NC_011989.1 3546718 3547596 D Cu resistance protein 3546718..3547596 Agrobacterium vitis S4 7386976 YP_002551068.1 CDS Avi_4217 NC_011989.1 3547701 3548498 D ABC type amino acid transport system periplasmic component protein 3547701..3548498 Agrobacterium vitis S4 7386977 YP_002551069.1 CDS Avi_4218 NC_011989.1 3548516 3549340 D amino acid ABC transporter permease 3548516..3549340 Agrobacterium vitis S4 7386978 YP_002551070.1 CDS Avi_4222 NC_011989.1 3550480 3552264 D glycosyltransferase TPR domain-containing protein 3550480..3552264 Agrobacterium vitis S4 7386979 YP_002551071.1 CDS leuC NC_011989.1 3552573 3553982 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 3552573..3553982 Agrobacterium vitis S4 7386980 YP_002551072.1 CDS yafB NC_011989.1 3554059 3554889 R oxidoreductase complement(3554059..3554889) Agrobacterium vitis S4 7386981 YP_002551073.1 CDS Avi_4226 NC_011989.1 3555044 3555604 R hypothetical protein complement(3555044..3555604) Agrobacterium vitis S4 7386982 YP_002551074.1 CDS mtrA NC_011989.1 3555724 3556407 D two component response regulator 3555724..3556407 Agrobacterium vitis S4 7386983 YP_002551075.1 CDS Avi_4229 NC_011989.1 3556445 3556900 D hypothetical protein 3556445..3556900 Agrobacterium vitis S4 7386984 YP_002551076.1 CDS Avi_4231 NC_011989.1 3557221 3558129 R nucleotidyltransferase complement(3557221..3558129) Agrobacterium vitis S4 7386985 YP_002551077.1 CDS xth NC_011989.1 3558158 3558961 R exodeoxyribonuclease III complement(3558158..3558961) Agrobacterium vitis S4 7386986 YP_002551078.1 CDS Avi_4235 NC_011989.1 3559096 3559758 R lolA type protein complement(3559096..3559758) Agrobacterium vitis S4 7386987 YP_002551079.1 CDS Avi_4236 NC_011989.1 3559879 3562521 R ftsK cell division protein complement(3559879..3562521) Agrobacterium vitis S4 7386988 YP_002551080.1 CDS amt NC_011989.1 3562812 3564170 R ammonium transporter complement(3562812..3564170) Agrobacterium vitis S4 7386989 YP_002551081.1 CDS glnK NC_011989.1 3564199 3564549 R nitrogen regulatory protein PII complement(3564199..3564549) Agrobacterium vitis S4 7386990 YP_002551082.1 CDS tesB NC_011989.1 3564768 3565652 R acyl-CoA thioesterase II complement(3564768..3565652) Agrobacterium vitis S4 7386991 YP_002551083.1 CDS Avi_4242 NC_011989.1 3565817 3566953 D 2-octaprenyl-6-methoxyphenyl hydroxylase 3565817..3566953 Agrobacterium vitis S4 7386992 YP_002551084.1 CDS Avi_4243 NC_011989.1 3567004 3567192 R hypothetical protein complement(3567004..3567192) Agrobacterium vitis S4 7386993 YP_002551085.1 CDS lonD NC_011989.1 3567226 3567900 R ATP-dependent protease LA 2 complement(3567226..3567900) Agrobacterium vitis S4 7386498 YP_002551086.1 CDS trx NC_011989.1 3568078 3569082 R thioredoxin complement(3568078..3569082) Agrobacterium vitis S4 7386499 YP_002551087.1 CDS Avi_4247 NC_011989.1 3569261 3569770 R hypothetical protein complement(3569261..3569770) Agrobacterium vitis S4 7386500 YP_002551088.1 CDS Avi_4248 NC_011989.1 3570337 3571632 R MFS permease complement(3570337..3571632) Agrobacterium vitis S4 7387166 YP_002551089.1 CDS galM NC_011989.1 3571733 3572794 R aldose 1-epimerase complement(3571733..3572794) Agrobacterium vitis S4 7386502 YP_002551090.1 CDS Avi_4250 NC_011989.1 3572921 3574108 R hypothetical protein complement(3572921..3574108) Agrobacterium vitis S4 7386503 YP_002551091.1 CDS Avi_4251 NC_011989.1 3574115 3574567 R Histone acetyl transferase complement(3574115..3574567) Agrobacterium vitis S4 7386504 YP_002551092.1 CDS metA NC_011989.1 3574564 3575493 R catalyzes the formation of O-succinyl-L-homoserine from succinyl-CoA and L-homoserine in methionine biosynthesis; homoserine O-succinyltransferase complement(3574564..3575493) Agrobacterium vitis S4 7386505 YP_002551093.1 CDS Avi_4254 NC_011989.1 3575701 3576567 R ATPase complement(3575701..3576567) Agrobacterium vitis S4 7386506 YP_002551094.1 CDS Avi_4257 NC_011989.1 3577050 3577319 D cold shock protein 3577050..3577319 Agrobacterium vitis S4 7386507 YP_002551095.1 CDS rpsU NC_011989.1 3577355 3577603 D a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 3577355..3577603 Agrobacterium vitis S4 7386508 YP_002551096.1 CDS Avi_4260 NC_011989.1 3577783 3578442 D thiamine pyrophosphokinase 3577783..3578442 Agrobacterium vitis S4 7386509 YP_002551097.1 CDS Avi_4261 NC_011989.1 3578446 3580275 D ABC transporter ATPase 3578446..3580275 Agrobacterium vitis S4 7386510 YP_002551098.1 CDS Avi_4263 NC_011989.1 3580834 3581121 R hypothetical protein complement(3580834..3581121) Agrobacterium vitis S4 7386511 YP_002551099.1 CDS exsE NC_011989.1 3581544 3583316 R ABC transporter ATPase complement(3581544..3583316) Agrobacterium vitis S4 7386512 YP_002551100.1 CDS Avi_4265 NC_011989.1 3583550 3584215 R hypothetical protein complement(3583550..3584215) Agrobacterium vitis S4 7386513 YP_002551101.1 CDS tbpA NC_011989.1 3584780 3585781 D part of the thiamine and TPP transport system tbpA-thiPQ; thiamine transporter substrate binding subunit 3584780..3585781 Agrobacterium vitis S4 7386514 YP_002551102.1 CDS thiP NC_011989.1 3585790 3587418 D permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 3585790..3587418 Agrobacterium vitis S4 7386515 YP_002551103.1 CDS thiQ NC_011989.1 3587415 3588164 D thiamine ABC transporter ATP-binding protein 3587415..3588164 Agrobacterium vitis S4 7386516 YP_002551104.1 CDS Avi_4269 NC_011989.1 3588525 3590066 D hypothetical protein 3588525..3590066 Agrobacterium vitis S4 7386517 YP_002551105.1 CDS rpoH2 NC_011989.1 3590202 3591059 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma-32 is responsible for the expression of heat shock promoters; there are paralogs in Rhizobium and Sinorhizobium; the proteins in this cluster act as secondary heat shock sigma factors; the Rhizobium sigma-32 factor may also be involved in exopolysaccharide production; RNA polymerase factor sigma-32 complement(3590202..3591059) Agrobacterium vitis S4 7386518 YP_002551106.1 CDS Avi_4272 NC_011989.1 3591544 3593475 D molecular chaperone; heat shock protein 90 3591544..3593475 Agrobacterium vitis S4 7386519 YP_002551107.1 CDS bfr NC_011989.1 3593541 3594026 R bacterioferritin complement(3593541..3594026) Agrobacterium vitis S4 7386520 YP_002551108.1 CDS Avi_4276 NC_011989.1 3594473 3594814 R hypothetical protein complement(3594473..3594814) Agrobacterium vitis S4 7386521 YP_002551109.1 CDS Avi_4277 NC_011989.1 3594906 3595388 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(3594906..3595388) Agrobacterium vitis S4 7386522 YP_002551110.1 CDS Avi_4278 NC_011989.1 3595552 3595965 R hypothetical protein complement(3595552..3595965) Agrobacterium vitis S4 7386523 YP_002551111.1 CDS nadD NC_011989.1 3596052 3596708 R transfers an adenyl group from ATP to NaMN to form nicotinic acid adenine dinucleotide (NaAD) which is then converted to the ubiquitous compound NAD by NAD synthetase; essential enzyme in bacteria; nicotinic acid mononucleotide adenylyltransferase complement(3596052..3596708) Agrobacterium vitis S4 7386524 YP_002551112.1 CDS proA NC_011989.1 3596683 3597966 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(3596683..3597966) Agrobacterium vitis S4 7386525 YP_002551113.1 CDS proB NC_011989.1 3597959 3599137 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(3597959..3599137) Agrobacterium vitis S4 7386526 YP_002551114.1 CDS obgE NC_011989.1 3599134 3600234 R essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE complement(3599134..3600234) Agrobacterium vitis S4 7386527 YP_002551115.1 CDS Avi_4283 NC_011989.1 3600322 3601182 D Metal-dependent exonuclease 3600322..3601182 Agrobacterium vitis S4 7386528 YP_002551116.1 CDS Avi_4284 NC_011989.1 3601219 3601806 R acetyltransferase complement(3601219..3601806) Agrobacterium vitis S4 7386529 YP_002551117.1 CDS Avi_4286 NC_011989.1 3601806 3602438 R acetyltransferase complement(3601806..3602438) Agrobacterium vitis S4 7386530 YP_002551118.1 CDS rpmA NC_011989.1 3602566 3602838 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(3602566..3602838) Agrobacterium vitis S4 7386531 YP_002551119.1 CDS rplU NC_011989.1 3602877 3603191 R 50S ribosomal protein L21 complement(3602877..3603191) Agrobacterium vitis S4 7386532 YP_002551120.1 CDS rkpJ NC_011989.1 3603780 3605084 R capsular polysaccharide biosynthesis protein complement(3603780..3605084) Agrobacterium vitis S4 7387167 YP_002551121.1 CDS Avi_4291 NC_011989.1 3605220 3606572 D capsular polysaccharide biosynthesis protein 3605220..3606572 Agrobacterium vitis S4 7386534 YP_002551122.1 CDS purH NC_011989.1 3606692 3608251 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(3606692..3608251) Agrobacterium vitis S4 7386535 YP_002551123.1 CDS Avi_4294 NC_011989.1 3608461 3610017 R hypothetical protein complement(3608461..3610017) Agrobacterium vitis S4 7386536 YP_002551124.1 CDS sun NC_011989.1 3610253 3611734 R Sun protein complement(3610253..3611734) Agrobacterium vitis S4 7386537 YP_002551125.1 CDS htpx NC_011989.1 3611725 3612753 R protease heat shock protein complement(3611725..3612753) Agrobacterium vitis S4 7386538 YP_002551126.1 CDS Avi_4297 NC_011989.1 3612863 3613093 D hypothetical protein 3612863..3613093 Agrobacterium vitis S4 7386539 YP_002551127.1 CDS Avi_4298 NC_011989.1 3613288 3613515 D hypothetical protein 3613288..3613515 Agrobacterium vitis S4 7386540 YP_002551128.1 CDS Avi_4299 NC_011989.1 3613799 3615274 D hypothetical protein 3613799..3615274 Agrobacterium vitis S4 7386541 YP_002551129.1 CDS Avi_4300 NC_011989.1 3615264 3616598 D carboxy-terminal protease 3615264..3616598 Agrobacterium vitis S4 7386542 YP_002551130.1 CDS Avi_4301 NC_011989.1 3616776 3617972 D hypothetical protein 3616776..3617972 Agrobacterium vitis S4 7386543 YP_002551131.1 CDS ialA NC_011989.1 3618012 3618539 D hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase 3618012..3618539 Agrobacterium vitis S4 7386544 YP_002551132.1 CDS parA NC_011989.1 3618546 3619304 R chromosome partitioning protein complement(3618546..3619304) Agrobacterium vitis S4 7386545 YP_002551133.1 CDS Avi_4304 NC_011989.1 3619550 3619909 D hypothetical protein 3619550..3619909 Agrobacterium vitis S4 7386546 YP_002551134.1 CDS Avi_4305 NC_011989.1 3619906 3620478 D hypothetical protein 3619906..3620478 Agrobacterium vitis S4 7386547 YP_002551135.1 CDS Avi_4307 NC_011989.1 3620512 3621219 D hypothetical protein 3620512..3621219 Agrobacterium vitis S4 7386548 YP_002551136.1 CDS Avi_4308 NC_011989.1 3621605 3622177 D hypothetical protein 3621605..3622177 Agrobacterium vitis S4 7386549 YP_002551137.1 CDS cheB NC_011989.1 3622552 3623646 R protein-glutamate methylesterase complement(3622552..3623646) Agrobacterium vitis S4 7386550 YP_002551138.1 CDS cheR NC_011989.1 3623654 3624535 R chemotaxis methyltransferase complement(3623654..3624535) Agrobacterium vitis S4 7386551 YP_002551139.1 CDS cheW NC_011989.1 3624532 3625026 R chemotaxis protein complement(3624532..3625026) Agrobacterium vitis S4 7386552 YP_002551140.1 CDS Avi_4312 NC_011989.1 3625028 3626848 R methyl-accepting chemotaxis protein complement(3625028..3626848) Agrobacterium vitis S4 7386553 YP_002551141.1 CDS Avi_4313 NC_011989.1 3626934 3628862 R methyl-accepting chemotaxis protein complement(3626934..3628862) Agrobacterium vitis S4 7386554 YP_002551142.1 CDS Avi_4314 NC_011989.1 3629016 3630710 R methyl-accepting chemotaxis protein complement(3629016..3630710) Agrobacterium vitis S4 7386555 YP_002551143.1 CDS cheW NC_011989.1 3630719 3631246 R chemotaxis protein complement(3630719..3631246) Agrobacterium vitis S4 7386556 YP_002551144.1 CDS cheA NC_011989.1 3631243 3633300 R Chemotaxis protein histidine kinase complement(3631243..3633300) Agrobacterium vitis S4 7386557 YP_002551145.1 CDS cheY NC_011989.1 3633297 3633665 R chemotaxis receiver protein complement(3633297..3633665) Agrobacterium vitis S4 7386558 YP_002551146.1 CDS Avi_4318 NC_011989.1 3633670 3633996 R hypothetical protein complement(3633670..3633996) Agrobacterium vitis S4 7386559 YP_002551147.1 CDS Avi_4319 NC_011989.1 3633993 3635141 R Metal dependent phosphohydrolase with a response regulator receiver protein complement(3633993..3635141) Agrobacterium vitis S4 7386560 YP_002551148.1 CDS Avi_4321 NC_011989.1 3635571 3636743 R hypothetical protein complement(3635571..3636743) Agrobacterium vitis S4 7386561 YP_002551149.1 CDS Avi_4322 NC_011989.1 3636859 3640395 R proline utilization protein A; multifunctional protein that functions in proline catabolism in the first two enzymatic steps resulting in the conversion of proline to glutamate; in Escherichia coli this protein self regulates transcription via a DNA-binding domain at the N-terminus but the protein from Pseudomonas does not have this domain; bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase complement(3636859..3640395) Agrobacterium vitis S4 7386562 YP_002551150.1 CDS putR NC_011989.1 3640712 3641182 D transcriptional regulator AsnC family 3640712..3641182 Agrobacterium vitis S4 7386563 YP_002551151.1 CDS Avi_4326 NC_011989.1 3641316 3641630 D hypothetical protein 3641316..3641630 Agrobacterium vitis S4 7386564 YP_002551152.1 CDS Avi_4327 NC_011989.1 3641776 3642375 D hypothetical protein 3641776..3642375 Agrobacterium vitis S4 7386565 YP_002551153.1 CDS Avi_4328 NC_011989.1 3642386 3643174 R short chain dehydrogenase complement(3642386..3643174) Agrobacterium vitis S4 7386566 YP_002551154.1 CDS Avi_4329 NC_011989.1 3643186 3644553 R Aminotransferase complement(3643186..3644553) Agrobacterium vitis S4 7386567 YP_002551155.1 CDS Avi_4330 NC_011989.1 3644668 3652239 R polyketide synthetase complement(3644668..3652239) Agrobacterium vitis S4 7386568 YP_002551156.1 CDS Avi_4331 NC_011989.1 3652769 3653923 D MFS permease 3652769..3653923 Agrobacterium vitis S4 7386569 YP_002551157.1 CDS ispG NC_011989.1 3654011 3655261 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 3654011..3655261 Agrobacterium vitis S4 7386570 YP_002551158.1 CDS ompA NC_011989.1 3655368 3656033 D porin 3655368..3656033 Agrobacterium vitis S4 7386571 YP_002551159.1 CDS rhtB NC_011989.1 3656124 3656762 R RhtB family transporter complement(3656124..3656762) Agrobacterium vitis S4 7386572 YP_002551160.1 CDS ispA NC_011989.1 3656851 3657702 R geranyltranstransferase complement(3656851..3657702) Agrobacterium vitis S4 7386573 YP_002551161.1 CDS mtgA NC_011989.1 3658037 3658702 D glycosyltransferase; polymerizes glycan strands in the peptidoglycan; monofunctional biosynthetic peptidoglycan transglycosylase 3658037..3658702 Agrobacterium vitis S4 7386574 YP_002551162.1 CDS Avi_4340 NC_011989.1 3658776 3659435 D glutathione S-transferase 3658776..3659435 Agrobacterium vitis S4 7386575 YP_002551163.1 CDS rpmF NC_011989.1 3659634 3659819 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 3659634..3659819 Agrobacterium vitis S4 7386576 YP_002551164.1 CDS Avi_4343 NC_011989.1 3659979 3660554 R hypothetical protein complement(3659979..3660554) Agrobacterium vitis S4 7386577 YP_002551165.1 CDS phbA NC_011989.1 3660749 3661975 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; in Rhizobia and Ralstonia is involved in PHB biosynthesis; acetyl-CoA acetyltransferase 3660749..3661975 Agrobacterium vitis S4 7386578 YP_002551166.1 CDS phbB NC_011989.1 3662322 3663047 D acetoacetyl CoA reductase; poly-beta-hydroxybutyrate biosynthesis 3662322..3663047 Agrobacterium vitis S4 7386579 YP_002551167.1 CDS Avi_4346 NC_011989.1 3663435 3663590 R hypothetical protein complement(3663435..3663590) Agrobacterium vitis S4 7387926 YP_002551168.1 CDS mgpS NC_011989.1 3664054 3667197 D ATP-dependent helicase 3664054..3667197 Agrobacterium vitis S4 7387927 YP_002551169.1 CDS Avi_4348 NC_011989.1 3667201 3667602 D hypothetical protein 3667201..3667602 Agrobacterium vitis S4 7387928 YP_002551170.1 CDS fdxA NC_011989.1 3667944 3668294 D ferredoxin 3667944..3668294 Agrobacterium vitis S4 7387929 YP_002551171.1 CDS Avi_4352 NC_011989.1 3668926 3669597 D transcriptional regulator CarD family 3668926..3669597 Agrobacterium vitis S4 7387930 YP_002551172.1 CDS Avi_4353 NC_011989.1 3669834 3671561 R methyl-accepting chemotaxis protein complement(3669834..3671561) Agrobacterium vitis S4 7387931 YP_002551173.1 CDS Avi_4355 NC_011989.1 3671722 3671937 R hypothetical protein complement(3671722..3671937) Agrobacterium vitis S4 7387932 YP_002551174.1 CDS citE NC_011989.1 3671934 3672833 R citrate lyase beta subunit complement(3671934..3672833) Agrobacterium vitis S4 7387933 YP_002551175.1 CDS Avi_4357 NC_011989.1 3672945 3673196 D hypothetical protein 3672945..3673196 Agrobacterium vitis S4 7387934 YP_002551176.1 CDS leuD NC_011989.1 3673325 3673930 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 3673325..3673930 Agrobacterium vitis S4 7387935 YP_002551177.1 CDS leuB NC_011989.1 3674236 3675348 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 3674236..3675348 Agrobacterium vitis S4 7387936 YP_002551178.1 CDS Avi_4360 NC_011989.1 3675483 3676289 D lipid A 1-phosphatase 3675483..3676289 Agrobacterium vitis S4 7387937 YP_002551179.1 CDS mtbA NC_011989.1 3676358 3678241 R MFS permease complement(3676358..3678241) Agrobacterium vitis S4 7387938 YP_002551180.1 CDS asd NC_011989.1 3678740 3679774 D aspartate-semialdehyde dehydrogenase 3678740..3679774 Agrobacterium vitis S4 7387939 YP_002551181.1 CDS Avi_4364 NC_011989.1 3679771 3680721 D hypothetical protein 3679771..3680721 Agrobacterium vitis S4 7387940 YP_002551182.1 CDS Avi_4365 NC_011989.1 3680921 3682795 D hypothetical protein 3680921..3682795 Agrobacterium vitis S4 7387941 YP_002551183.1 CDS cah NC_011989.1 3682909 3683550 R carbonate dehydratase complement(3682909..3683550) Agrobacterium vitis S4 7387942 YP_002551184.1 CDS pdxK NC_011989.1 3683622 3684500 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase complement(3683622..3684500) Agrobacterium vitis S4 7387943 YP_002551185.1 CDS gdh NC_011989.1 3684738 3689543 D NAD-glutamate dehydrogenase 3684738..3689543 Agrobacterium vitis S4 7387944 YP_002551186.1 CDS Avi_4369 NC_011989.1 3689700 3691022 D hypothetical protein 3689700..3691022 Agrobacterium vitis S4 7387945 YP_002551187.1 CDS chvB NC_011989.1 3691110 3699611 R beta (1-->2) glucan biosynthesis protein complement(3691110..3699611) Agrobacterium vitis S4 7387946 YP_002551188.1 CDS hipO NC_011989.1 3700210 3701349 D hippurate hydrolase 3700210..3701349 Agrobacterium vitis S4 7387947 YP_002551189.1 CDS chvA NC_011989.1 3701463 3703214 R responsible for transport of beta-1,2-glucans from the cytoplasm to periplasm; inner membrane ABC transporter permease component; Cgt; ChvA; NdvA; cyclic beta-1,2-glucan ABC transporter complement(3701463..3703214) Agrobacterium vitis S4 7387948 YP_002551190.1 CDS aviR NC_011989.1 3703490 3704230 D transcriptional regulator LuxR family 3703490..3704230 Agrobacterium vitis S4 7387949 YP_002551191.1 CDS pycA NC_011989.1 3704337 3707798 D biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase 3704337..3707798 Agrobacterium vitis S4 7387950 YP_002551192.1 CDS Avi_4376 NC_011989.1 3707980 3708423 R hypothetical protein complement(3707980..3708423) Agrobacterium vitis S4 7387951 YP_002551193.1 CDS acs NC_011989.1 3708747 3710702 R Acs; catalyzes the conversion of acetate and CoA to acetyl-CoA; acetyl-CoA synthetase complement(3708747..3710702) Agrobacterium vitis S4 7387952 YP_002551194.1 CDS Avi_4378 NC_011989.1 3710992 3711687 D hypothetical protein 3710992..3711687 Agrobacterium vitis S4 7387953 YP_002551195.1 CDS Avi_4380 NC_011989.1 3711920 3712579 R hypothetical protein complement(3711920..3712579) Agrobacterium vitis S4 7387954 YP_002551196.1 CDS leuS NC_011989.1 3712780 3715410 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 3712780..3715410 Agrobacterium vitis S4 7387955 YP_002551197.1 CDS Avi_4382 NC_011989.1 3715400 3715924 D hypothetical protein 3715400..3715924 Agrobacterium vitis S4 7387956 YP_002551198.1 CDS holA NC_011989.1 3716198 3717241 D required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 3716198..3717241 Agrobacterium vitis S4 7387957 YP_002551199.1 CDS parB NC_011989.1 3717340 3718218 R chromosome partitioning protein complement(3717340..3718218) Agrobacterium vitis S4 7387958 YP_002551200.1 CDS parA NC_011989.1 3718323 3719117 R chromosome partitioning protein complement(3718323..3719117) Agrobacterium vitis S4 7387959 YP_002551201.1 CDS gidB NC_011989.1 3719136 3719771 R glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB complement(3719136..3719771) Agrobacterium vitis S4 7387960 YP_002551202.1 CDS gidA NC_011989.1 3719776 3721641 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA complement(3719776..3721641) Agrobacterium vitis S4 7387961 YP_002551203.1 CDS trmE NC_011989.1 3721676 3722986 R tRNA modification GTPase TrmE complement(3721676..3722986) Agrobacterium vitis S4 7387962 YP_002551204.1 CDS rho NC_011989.1 3723135 3724400 R An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho complement(3723135..3724400) Agrobacterium vitis S4 7387963 YP_002551205.1 CDS Avi_4392 NC_011989.1 3724596 3725135 R hypothetical protein complement(3724596..3725135) Agrobacterium vitis S4 7387964 YP_002551206.1 CDS hemE NC_011989.1 3725137 3726177 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(3725137..3726177) Agrobacterium vitis S4 7387965 YP_002551383.1 CDS repA NC_011991.1 279 1496 D replication protein A 279..1496 Agrobacterium vitis S4 7381876 YP_002551384.1 CDS repB NC_011991.1 1493 2491 D replication protein B 1493..2491 Agrobacterium vitis S4 7381877 YP_002551385.1 CDS repC NC_011991.1 2674 3903 D replication initiation protein RepC 2674..3903 Agrobacterium vitis S4 7381878 YP_002551386.1 CDS Avi_9504 NC_011991.1 3932 4750 R alpha/beta hydrolase protein complement(3932..4750) Agrobacterium vitis S4 7381879 YP_002551387.1 CDS Avi_9505 NC_011991.1 4953 5690 D GGDEF domain-containing protein 4953..5690 Agrobacterium vitis S4 7381880 YP_002551388.1 CDS Avi_9506 NC_011991.1 5858 6244 D hypothetical protein 5858..6244 Agrobacterium vitis S4 7381881 YP_002551389.1 CDS Avi_9507 NC_011991.1 6241 6768 D hypothetical protein 6241..6768 Agrobacterium vitis S4 7381882 YP_002551390.1 CDS Avi_9508 NC_011991.1 6832 7143 D hypothetical protein 6832..7143 Agrobacterium vitis S4 7381883 YP_002551391.1 CDS intX NC_011991.1 7190 8302 R phage-related integrase complement(7190..8302) Agrobacterium vitis S4 7381884 YP_002551392.1 CDS Avi_9511 NC_011991.1 8346 8765 R nucleic acid-binding protein complement(8346..8765) Agrobacterium vitis S4 7381885 YP_002551393.1 CDS Avi_9513 NC_011991.1 9238 10335 D hypothetical protein 9238..10335 Agrobacterium vitis S4 7381886 YP_002551394.1 CDS Avi_9514 NC_011991.1 10397 10969 R hypothetical protein complement(10397..10969) Agrobacterium vitis S4 7381887 YP_002551395.1 CDS rpsB NC_011991.1 10980 11903 R 30S ribosomal protein S2 complement(10980..11903) Agrobacterium vitis S4 7381888 YP_002551396.1 CDS Avi_9517 NC_011991.1 12111 15983 D hypothetical protein 12111..15983 Agrobacterium vitis S4 7381889 YP_002551397.1 CDS Avi_9519 NC_011991.1 16434 16715 R hypothetical protein complement(16434..16715) Agrobacterium vitis S4 7381890 YP_002551398.1 CDS Avi_9520 NC_011991.1 16828 17115 D hypothetical protein 16828..17115 Agrobacterium vitis S4 7381891 YP_002551399.1 CDS Avi_9521 NC_011991.1 17350 18660 D hypothetical protein 17350..18660 Agrobacterium vitis S4 7381892 YP_002551400.1 CDS Avi_9522 NC_011991.1 18787 19353 D hypothetical protein 18787..19353 Agrobacterium vitis S4 7381893 YP_002551401.1 CDS Avi_9524 NC_011991.1 19826 20632 D hypothetical protein 19826..20632 Agrobacterium vitis S4 7381894 YP_002551402.1 CDS Avi_9525 NC_011991.1 20632 22509 D hypothetical protein 20632..22509 Agrobacterium vitis S4 7381895 YP_002551403.1 CDS Avi_9526 NC_011991.1 22615 24360 R hypothetical protein complement(22615..24360) Agrobacterium vitis S4 7381896 YP_002551404.1 CDS Avi_9527 NC_011991.1 24544 25332 R hypothetical protein complement(24544..25332) Agrobacterium vitis S4 7381897 YP_002551405.1 CDS Avi_9528 NC_011991.1 25510 26523 D hypothetical protein 25510..26523 Agrobacterium vitis S4 7381898 YP_002551406.1 CDS Avi_9529 NC_011991.1 26662 27747 D hypothetical protein 26662..27747 Agrobacterium vitis S4 7381899 YP_002551407.1 CDS Avi_9530 NC_011991.1 28041 29846 R hypothetical protein complement(28041..29846) Agrobacterium vitis S4 7381900 YP_002551408.1 CDS Avi_9531 NC_011991.1 29843 33256 R helicase ATP-binding protein complement(29843..33256) Agrobacterium vitis S4 7381901 YP_002551409.1 CDS pbpB2 NC_011991.1 33816 35573 R penicillin-binding protein complement(33816..35573) Agrobacterium vitis S4 7381902 YP_002551410.1 CDS Avi_9533 NC_011991.1 35784 36209 R transcriptional regulator Cro/CI family complement(35784..36209) Agrobacterium vitis S4 7381903 YP_002551411.1 CDS Avi_9535 NC_011991.1 36246 36512 R hypothetical transcription regulator protein complement(36246..36512) Agrobacterium vitis S4 7381904 YP_002551412.1 CDS Avi_9536 NC_011991.1 36609 36917 D hypothetical protein 36609..36917 Agrobacterium vitis S4 7381905 YP_002551413.1 CDS Avi_9537 NC_011991.1 36960 37943 D hypothetical protein 36960..37943 Agrobacterium vitis S4 7381906 YP_002551414.1 CDS Avi_9538 NC_011991.1 37940 38665 D hypothetical protein 37940..38665 Agrobacterium vitis S4 7381907 YP_002551415.1 CDS Avi_9539 NC_011991.1 38678 38971 D hypothetical protein 38678..38971 Agrobacterium vitis S4 7381908 YP_002551416.1 CDS Avi_9541 NC_011991.1 39073 44178 D helicase SNF2 family 39073..44178 Agrobacterium vitis S4 7381909 YP_002551417.1 CDS Avi_9542 NC_011991.1 44261 44698 R hypothetical protein complement(44261..44698) Agrobacterium vitis S4 7381910 YP_002551418.1 CDS Avi_9545 NC_011991.1 45192 45626 D hypothetical protein 45192..45626 Agrobacterium vitis S4 7381911 YP_002551419.1 CDS Avi_9546 NC_011991.1 45642 45941 D CspA-like protein 45642..45941 Agrobacterium vitis S4 7381912 YP_002551420.1 CDS Avi_9549 NC_011991.1 46023 46520 R hypothetical protein complement(46023..46520) Agrobacterium vitis S4 7381913 YP_002551421.1 CDS Avi_9550 NC_011991.1 46526 46876 R hypothetical protein complement(46526..46876) Agrobacterium vitis S4 7381914 YP_002551422.1 CDS Avi_9551 NC_011991.1 46925 47209 R hypothetical protein complement(46925..47209) Agrobacterium vitis S4 7381915 YP_002551423.1 CDS parB NC_011991.1 47213 49003 D ParB family; plasmid partitioning protein 47213..49003 Agrobacterium vitis S4 7381916 YP_002551424.1 CDS Avi_9554 NC_011991.1 49097 49573 D hypothetical protein 49097..49573 Agrobacterium vitis S4 7381917 YP_002551425.1 CDS Avi_9555 NC_011991.1 49570 50034 D hypothetical protein 49570..50034 Agrobacterium vitis S4 7381918 YP_002551426.1 CDS Avi_9556 NC_011991.1 50031 50450 D hypothetical protein 50031..50450 Agrobacterium vitis S4 7381919 YP_002551427.1 CDS Avi_9557 NC_011991.1 50580 51065 R hypothetical protein complement(50580..51065) Agrobacterium vitis S4 7381920 YP_002551428.1 CDS Avi_9558 NC_011991.1 51064 51651 D hypothetical protein 51064..51651 Agrobacterium vitis S4 7381921 YP_002551429.1 CDS Avi_9559 NC_011991.1 51766 52245 D hypothetical protein 51766..52245 Agrobacterium vitis S4 7381922 YP_002551430.1 CDS ardC NC_011991.1 53364 54290 D antirestriction protein 53364..54290 Agrobacterium vitis S4 7381924 YP_002551431.1 CDS Avi_9566 NC_011991.1 54290 54841 D hypothetical protein 54290..54841 Agrobacterium vitis S4 7381925 YP_002551432.1 CDS Avi_9567 NC_011991.1 54838 55782 D hypothetical protein 54838..55782 Agrobacterium vitis S4 7381926 YP_002551433.1 CDS Avi_9569 NC_011991.1 55940 56224 R hypothetical protein complement(55940..56224) Agrobacterium vitis S4 7381927 YP_002551434.1 CDS Avi_9570 NC_011991.1 56381 56896 R hypothetical protein complement(56381..56896) Agrobacterium vitis S4 7381928 YP_002551435.1 CDS Avi_9572 NC_011991.1 57378 57695 D hypothetical protein 57378..57695 Agrobacterium vitis S4 7381929 YP_002551436.1 CDS Avi_9577 NC_011991.1 58430 59485 D hypothetical protein 58430..59485 Agrobacterium vitis S4 7381930 YP_002551437.1 CDS Avi_9580 NC_011991.1 59884 60285 D hypothetical protein 59884..60285 Agrobacterium vitis S4 7381931 YP_002551438.1 CDS Avi_9583 NC_011991.1 60465 60785 R hypothetical protein complement(60465..60785) Agrobacterium vitis S4 7381932 YP_002551439.1 CDS Avi_9585 NC_011991.1 61091 61414 D hypothetical protein 61091..61414 Agrobacterium vitis S4 7381933 YP_002551440.1 CDS Avi_9587 NC_011991.1 61930 62268 R hypothetical protein complement(61930..62268) Agrobacterium vitis S4 7381934 YP_002551441.1 CDS Avi_9588 NC_011991.1 62265 62570 R hypothetical protein complement(62265..62570) Agrobacterium vitis S4 7381935 YP_002551442.1 CDS traG NC_011991.1 62749 64638 R VirD4 family; conjugal transfer coupling protein TraG complement(62749..64638) Agrobacterium vitis S4 7381936 YP_002551443.1 CDS traD NC_011991.1 64625 64903 R conjugal transfer protein Dtr system complement(64625..64903) Agrobacterium vitis S4 7381937 YP_002551444.1 CDS traC NC_011991.1 64932 65156 R conjugal transfer protein Dtr system complement(64932..65156) Agrobacterium vitis S4 7381938 YP_002551445.1 CDS traA NC_011991.1 65368 69438 D Ti-type conjugative transfer relaxase TraA 65368..69438 Agrobacterium vitis S4 7381939 YP_002551446.1 CDS traF NC_011991.1 69435 69968 D conjugal transfer pilin processing protease TraF 69435..69968 Agrobacterium vitis S4 7381940 YP_002551447.1 CDS traB NC_011991.1 69985 71127 D conjugal transfer protein TraB 69985..71127 Agrobacterium vitis S4 7381941 YP_002551448.1 CDS traH NC_011991.1 71566 72201 D conjugal transfer protein TraH 71566..72201 Agrobacterium vitis S4 7381942 YP_002551449.1 CDS Avi_9601 NC_011991.1 72574 73140 R hypothetical protein complement(72574..73140) Agrobacterium vitis S4 7381943 YP_002551450.1 CDS Avi_9603 NC_011991.1 73516 73695 R hypothetical protein complement(73516..73695) Agrobacterium vitis S4 7381944 YP_002551451.1 CDS Avi_9605 NC_011991.1 73734 74039 D hypothetical protein 73734..74039 Agrobacterium vitis S4 7381945 YP_002551452.1 CDS Avi_9606 NC_011991.1 74455 75141 R hypothetical protein complement(74455..75141) Agrobacterium vitis S4 7381946 YP_002551453.1 CDS hisC NC_011991.1 75240 76346 R histidinol-phosphate aminotransferase complement(75240..76346) Agrobacterium vitis S4 7381947 YP_002551454.1 CDS Avi_9608 NC_011991.1 76409 77671 R isopropylmalate/homocitrate/citramalate synthase complement(76409..77671) Agrobacterium vitis S4 7381948 YP_002551455.1 CDS mmsB NC_011991.1 77770 78636 R 3-hydroxyisobutyrate dehydrogenase complement(77770..78636) Agrobacterium vitis S4 7381949 YP_002551456.1 CDS Avi_9610 NC_011991.1 78790 80637 R ABC transporter ATPase complement(78790..80637) Agrobacterium vitis S4 7381950 YP_002551457.1 CDS Avi_9611 NC_011991.1 80698 81372 R hypothetical protein complement(80698..81372) Agrobacterium vitis S4 7381951 YP_002551458.1 CDS Avi_9612 NC_011991.1 81422 82090 R transcriptional regulatory protein complement(81422..82090) Agrobacterium vitis S4 7381952 YP_002551459.1 CDS Avi_9615 NC_011991.1 82444 82893 D Transposase 82444..82893 Agrobacterium vitis S4 7381953 YP_002551460.1 CDS istB NC_011991.1 82904 83491 R IS21 family transposase complement(82904..83491) Agrobacterium vitis S4 7381954 YP_002551461.1 CDS Avi_9617 NC_011991.1 83757 84449 R transposase complement(83757..84449) Agrobacterium vitis S4 7381955 YP_002551462.1 CDS Avi_9618 NC_011991.1 84516 84752 D Transposase 84516..84752 Agrobacterium vitis S4 7381956 YP_002551463.1 CDS Avi_9620 NC_011991.1 84801 85253 D hypothetical protein 84801..85253 Agrobacterium vitis S4 7381957 YP_002551464.1 CDS Avi_9622 NC_011991.1 85269 85622 D transposase 85269..85622 Agrobacterium vitis S4 7381958 YP_002551465.1 CDS Avi_9623 NC_011991.1 85686 87305 D transposase 85686..87305 Agrobacterium vitis S4 7381850 YP_002551466.1 CDS Avi_9626 NC_011991.1 87689 89086 R glycosyltransferase complement(87689..89086) Agrobacterium vitis S4 7381852 YP_002551467.1 CDS cysN NC_011991.1 89159 91069 R sulfate adenylate transferase subunit 1 complement(89159..91069) Agrobacterium vitis S4 7381853 YP_002551468.1 CDS Avi_9630 NC_011991.1 91069 91971 R with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 complement(91069..91971) Agrobacterium vitis S4 7381854 YP_002551469.1 CDS Avi_9632 NC_011991.1 92048 92989 R hypothetical protein complement(92048..92989) Agrobacterium vitis S4 7381855 YP_002551470.1 CDS leuD NC_011991.1 93081 93779 R 3-isopropylmalate dehydratase small subunit complement(93081..93779) Agrobacterium vitis S4 7381856 YP_002551471.1 CDS leuC NC_011991.1 93776 95125 R 3-isopropylmalate dehydratase large subunit complement(93776..95125) Agrobacterium vitis S4 7381857 YP_002551472.1 CDS Avi_9638 NC_011991.1 95783 96763 D SyrP-like protein 95783..96763 Agrobacterium vitis S4 7381858 YP_002551473.1 CDS Avi_9641 NC_011991.1 96775 108060 D peptide synthetase 96775..108060 Agrobacterium vitis S4 7381859 YP_002551474.1 CDS Avi_9643 NC_011991.1 108053 115738 D peptide synthetase 108053..115738 Agrobacterium vitis S4 7381860 YP_002551475.1 CDS Avi_9644 NC_011991.1 115923 116480 D Phosphopantetheinyl transferase 115923..116480 Agrobacterium vitis S4 7381861 YP_002551476.1 CDS Avi_9645 NC_011991.1 116565 117056 D hypothetical protein 116565..117056 Agrobacterium vitis S4 7381862 YP_002551477.1 CDS Avi_9646 NC_011991.1 117454 118068 R hypothetical protein complement(117454..118068) Agrobacterium vitis S4 7381863 YP_002551478.1 CDS trbI NC_011991.1 118069 119406 R conjugal transfer protein TrbI complement(118069..119406) Agrobacterium vitis S4 7381864 YP_002551479.1 CDS trbH NC_011991.1 119420 119875 R conjugal transfer protein TrbH complement(119420..119875) Agrobacterium vitis S4 7381865 YP_002551480.1 CDS trbG NC_011991.1 119879 120700 R conjugal transfer protein TrbG complement(119879..120700) Agrobacterium vitis S4 7381866 YP_002551481.1 CDS trbF NC_011991.1 120719 121384 R conjugal transfer protein TrbF complement(120719..121384) Agrobacterium vitis S4 7381867 YP_002551482.1 CDS trbL NC_011991.1 121425 122531 R conjugal transfer protein TrbL complement(121425..122531) Agrobacterium vitis S4 7381868 YP_002551483.1 CDS trbJ NC_011991.1 122804 123592 R conjugal transfer protein TrbJ complement(122804..123592) Agrobacterium vitis S4 7381869 YP_002551484.1 CDS trbE NC_011991.1 123567 125630 R type IV secretion system ATPase; VirB4 family; conjugal transfer protein TrbE complement(123567..125630) Agrobacterium vitis S4 7381870 YP_002551485.1 CDS trbD NC_011991.1 126009 126308 R conjugal transfer protein TrbD complement(126009..126308) Agrobacterium vitis S4 7381871 YP_002551486.1 CDS trbC NC_011991.1 126301 126666 R conjugal transfer protein complement(126301..126666) Agrobacterium vitis S4 7381872 YP_002551487.1 CDS trbB NC_011991.1 126684 127646 R VirB11 family protein; ATPase; conjugal transfer protein TrbB complement(126684..127646) Agrobacterium vitis S4 7381873 YP_002551488.1 CDS Avi_9665 NC_011991.1 128401 129123 D two-component transcriptional regulator LuxR family 128401..129123 Agrobacterium vitis S4 7381874 YP_002551489.1 CDS Avi_9666 NC_011991.1 129203 129871 D autoinducer (acylhomoserine lactone) synthase 129203..129871 Agrobacterium vitis S4 7381875 Avi_6551 tRNA Avi_6551 NC_011988.1 932878 932954 D tRNA-Ile 932878..932954 Agrobacterium vitis S4 7381152 Avi_6552 tRNA Avi_6552 NC_011988.1 933039 933114 D tRNA-Ala 933039..933114 Agrobacterium vitis S4 7381158 Avi_6553 tRNA Avi_6553 NC_011988.1 937170 937246 D tRNA-Met 937170..937246 Agrobacterium vitis S4 7381154 Avi_6554 tRNA Avi_6554 NC_011988.1 1046467 1046543 D tRNA-Ile 1046467..1046543 Agrobacterium vitis S4 7381155 Avi_6555 tRNA Avi_6555 NC_011988.1 1046628 1046703 D tRNA-Ala 1046628..1046703 Agrobacterium vitis S4 7381161 Avi_6556 tRNA Avi_6556 NC_011988.1 1050755 1050831 D tRNA-Met 1050755..1050831 Agrobacterium vitis S4 7381157 Avi_6557 tRNA Avi_6557 NC_011988.1 1167637 1167726 D tRNA-Ser 1167637..1167726 Agrobacterium vitis S4 7380792 Avi_4551 tRNA Avi_4551 NC_011989.1 63605 63681 D tRNA-Ile 63605..63681 Agrobacterium vitis S4 7387975 Avi_4552 tRNA Avi_4552 NC_011989.1 63766 63841 D tRNA-Ala 63766..63841 Agrobacterium vitis S4 7387991 Avi_4553 tRNA Avi_4553 NC_011989.1 67893 67969 D tRNA-Met 67893..67969 Agrobacterium vitis S4 7387977 Avi_4597 tRNA Avi_4597 NC_011989.1 172857 172932 R tRNA-Ala complement(172857..172932) Agrobacterium vitis S4 7387514 Avi_4554 tRNA Avi_4554 NC_011989.1 189306 189392 D tRNA-Leu 189306..189392 Agrobacterium vitis S4 7387528 Avi_4596 tRNA Avi_4596 NC_011989.1 222372 222461 R tRNA-Ser complement(222372..222461) Agrobacterium vitis S4 7387561 Avi_4595 tRNA Avi_4595 NC_011989.1 387089 387165 R tRNA-Arg complement(387089..387165) Agrobacterium vitis S4 7388463 Avi_4555 tRNA Avi_4555 NC_011989.1 422318 422393 D tRNA-Thr 422318..422393 Agrobacterium vitis S4 7388495 Avi_4556 tRNA Avi_4556 NC_011989.1 465332 465405 D tRNA-Gly 465332..465405 Agrobacterium vitis S4 7388952 Avi_4594 tRNA Avi_4594 NC_011989.1 552980 553055 R tRNA-Phe complement(552980..553055) Agrobacterium vitis S4 7388683 Avi_4557 tRNA Avi_4557 NC_011989.1 559197 559271 D tRNA-Thr 559197..559271 Agrobacterium vitis S4 7388692 Avi_4558 tRNA Avi_4558 NC_011989.1 713358 713434 D tRNA-His 713358..713434 Agrobacterium vitis S4 7386311 Avi_4593 tRNA Avi_4593 NC_011989.1 749177 749250 R tRNA-Gln complement(749177..749250) Agrobacterium vitis S4 7387694 Avi_4592 tRNA Avi_4592 NC_011989.1 943834 943910 R tRNA-Pro complement(943834..943910) Agrobacterium vitis S4 7386190 Avi_4559 tRNA Avi_4559 NC_011989.1 957567 957640 D tRNA-Gln 957567..957640 Agrobacterium vitis S4 7386201 Avi_4560 tRNA Avi_4560 NC_011989.1 1205109 1205198 D tRNA-Ser 1205109..1205198 Agrobacterium vitis S4 7386414 Avi_4561 tRNA Avi_4561 NC_011989.1 1384264 1384340 D tRNA-Pro 1384264..1384340 Agrobacterium vitis S4 7386671 Avi_4591 tRNA Avi_4591 NC_011989.1 1426904 1426979 R tRNA-Val complement(1426904..1426979) Agrobacterium vitis S4 7386710 Avi_4562 tRNA Avi_4562 NC_011989.1 1427484 1427560 D tRNA-Asp 1427484..1427560 Agrobacterium vitis S4 7387181 Avi_4563 tRNA Avi_4563 NC_011989.1 1427623 1427699 D tRNA-Asp 1427623..1427699 Agrobacterium vitis S4 7388002 Avi_4564 tRNA Avi_4564 NC_011989.1 1507457 1507532 D tRNA-Thr 1507457..1507532 Agrobacterium vitis S4 7386781 Avi_4565 tRNA Avi_4565 NC_011989.1 1509501 1509585 D tRNA-Tyr 1509501..1509585 Agrobacterium vitis S4 7386783 Avi_4566 tRNA Avi_4566 NC_011989.1 1509612 1509685 D tRNA-Gly 1509612..1509685 Agrobacterium vitis S4 7388005 Avi_4567 tRNA Avi_4567 NC_011989.1 1513801 1513876 D tRNA-Trp 1513801..1513876 Agrobacterium vitis S4 7386787 Avi_4568 tRNA Avi_4568 NC_011989.1 1610877 1610961 D tRNA-Leu 1610877..1610961 Agrobacterium vitis S4 7387243 Avi_4590 tRNA Avi_4590 NC_011989.1 1683848 1683922 R tRNA-Asn complement(1683848..1683922) Agrobacterium vitis S4 7386866 Avi_4589 tRNA Avi_4589 NC_011989.1 1776110 1776185 R tRNA-Lys complement(1776110..1776185) Agrobacterium vitis S4 7387878 Avi_4588 tRNA Avi_4588 NC_011989.1 1874867 1874941 R tRNA-Glu complement(1874867..1874941) Agrobacterium vitis S4 7386370 Avi_4587 tRNA Avi_4587 NC_011989.1 1875118 1875192 R tRNA-Glu complement(1875118..1875192) Agrobacterium vitis S4 7387178 Avi_4586 tRNA Avi_4586 NC_011989.1 1875396 1875470 R tRNA-Glu complement(1875396..1875470) Agrobacterium vitis S4 7387177 Avi_4569 tRNA Avi_4569 NC_011989.1 1878578 1878654 D tRNA-Pro 1878578..1878654 Agrobacterium vitis S4 7386374 Avi_4570 tRNA Avi_4570 NC_011989.1 1879089 1879165 D tRNA-Arg 1879089..1879165 Agrobacterium vitis S4 7386375 Avi_4585 tRNA Avi_4585 NC_011989.1 2041752 2041836 R tRNA-Leu complement(2041752..2041836) Agrobacterium vitis S4 7385848 Avi_4571 tRNA Avi_4571 NC_011989.1 2160021 2160105 D tRNA-Leu 2160021..2160105 Agrobacterium vitis S4 7386614 Avi_4584 tRNA Avi_4584 NC_011989.1 2254125 2254198 R tRNA-Cys complement(2254125..2254198) Agrobacterium vitis S4 7388377 Avi_4583 tRNA Avi_4583 NC_011989.1 2309876 2309951 R tRNA-Lys complement(2309876..2309951) Agrobacterium vitis S4 7388420 Avi_4572 tRNA Avi_4572 NC_011989.1 2490711 2490786 D tRNA-Met 2490711..2490786 Agrobacterium vitis S4 7386147 Avi_4582 tRNA Avi_4582 NC_011989.1 2837527 2837603 R tRNA-Arg complement(2837527..2837603) Agrobacterium vitis S4 7387038 Avi_4573 tRNA Avi_4573 NC_011989.1 2973789 2973865 D tRNA-Met 2973789..2973865 Agrobacterium vitis S4 7388010 Avi_4574 tRNA Avi_4574 NC_011989.1 3110031 3110105 D tRNA-Val 3110031..3110105 Agrobacterium vitis S4 7388209 Avi_4581 tRNA Avi_4581 NC_011989.1 3316588 3316664 R tRNA-Met complement(3316588..3316664) Agrobacterium vitis S4 7387299 Avi_4580 tRNA Avi_4580 NC_011989.1 3320716 3320791 R tRNA-Ala complement(3320716..3320791) Agrobacterium vitis S4 7387979 Avi_4579 tRNA Avi_4579 NC_011989.1 3320876 3320952 R tRNA-Ile complement(3320876..3320952) Agrobacterium vitis S4 7387170 Avi_4578 tRNA Avi_4578 NC_011989.1 3369044 3369128 R tRNA-Leu complement(3369044..3369128) Agrobacterium vitis S4 7387333 Avi_4575 tRNA Avi_4575 NC_011989.1 3419035 3419111 D tRNA-Arg 3419035..3419111 Agrobacterium vitis S4 7388869 Avi_4576 tRNA Avi_4576 NC_011989.1 3570077 3570151 D tRNA-Gly 3570077..3570151 Agrobacterium vitis S4 7386501 Avi_4577 tRNA Avi_4577 NC_011989.1 3603686 3603775 D tRNA-Ser 3603686..3603775 Agrobacterium vitis S4 7386533 Avi_6501 rRNA Avi_6501 NC_011988.1 931002 932486 D 16S ribosomal RNA 931002..932486 Agrobacterium vitis S4 7381013 Avi_6502 rRNA Avi_6502 NC_011988.1 933760 936699 D 23S ribosomal RNA join(933760..933923,934003..936699) Agrobacterium vitis S4 7381159 Avi_6503 rRNA Avi_6503 NC_011988.1 936934 937052 D 5S ribosomal RNA 936934..937052 Agrobacterium vitis S4 7381153 Avi_6504 rRNA Avi_6504 NC_011988.1 1044591 1046075 D 16S ribosomal RNA 1044591..1046075 Agrobacterium vitis S4 7380860 Avi_6505 rRNA Avi_6505 NC_011988.1 1047349 1050284 D 23S ribosomal RNA join(1047349..1047512,1047592..1050284) Agrobacterium vitis S4 7381162 Avi_6506 rRNA Avi_6506 NC_011988.1 1050519 1050637 D 5S ribosomal RNA 1050519..1050637 Agrobacterium vitis S4 7381156 Avi_4501 rRNA Avi_4501 NC_011989.1 61729 63213 D 16S ribosomal RNA 61729..63213 Agrobacterium vitis S4 7389059 Avi_4502 rRNA Avi_4502 NC_011989.1 64487 67422 D 23S ribosomal RNA join(64487..64650,64730..67422) Agrobacterium vitis S4 7387992 Avi_4503 rRNA Avi_4503 NC_011989.1 67657 67775 D 5S ribosomal RNA 67657..67775 Agrobacterium vitis S4 7387976 Avi_4506 rRNA Avi_4506 NC_011989.1 3316782 3316900 R 5S ribosomal RNA complement(3316782..3316900) Agrobacterium vitis S4 7387171 Avi_4505 rRNA Avi_4505 NC_011989.1 3317135 3320070 R 23S ribosomal RNA complement(join(3317135..3319827,3319907..3320070)) Agrobacterium vitis S4 7387980 Avi_4504 rRNA Avi_4504 NC_011989.1 3321344 3322828 R 16S ribosomal RNA complement(3321344..3322828) Agrobacterium vitis S4 7387169