-- dump date 20140618_192553 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 634176000001 SEQ_END SEQ_END NC_012913.1 2313035 2313035 DR NC_012913.1; contig end 2313035..2313035 Aggregatibacter aphrophilus NJ8700 YP_003006537.1 CDS NT05HA_0001 NC_012913.1 2312912 1019 R identified by Glimmer3; putative; WD-40 repeat-containing protein complement(join(2312912..2313035,1..1019)) Aggregatibacter aphrophilus NJ8700 8122585 YP_003006538.1 CDS NT05HA_0002 NC_012913.1 1039 3267 R identified by Glimmer3; putative; hypothetical protein complement(1039..3267) Aggregatibacter aphrophilus NJ8700 8123303 YP_003006539.1 CDS NT05HA_0003 NC_012913.1 3254 4585 R identified by Glimmer3; putative; hypothetical protein complement(3254..4585) Aggregatibacter aphrophilus NJ8700 8123304 YP_003006540.1 CDS ansB NC_012913.1 4749 5798 R catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II complement(4749..5798) Aggregatibacter aphrophilus NJ8700 8123305 YP_003006541.1 CDS NT05HA_0005 NC_012913.1 5826 5939 R identified by Glimmer3; putative; hypothetical protein complement(5826..5939) Aggregatibacter aphrophilus NJ8700 8123306 YP_003006542.1 CDS NT05HA_0006 NC_012913.1 6097 6330 D identified by Glimmer3; putative; protein YfgB 6097..6330 Aggregatibacter aphrophilus NJ8700 8123307 YP_003006543.1 CDS NT05HA_0007 NC_012913.1 6317 7252 D identified by Glimmer3; putative; Cfr family radical SAM protein 6317..7252 Aggregatibacter aphrophilus NJ8700 8123308 YP_003006544.1 CDS NT05HA_0008 NC_012913.1 7274 7828 D identified by Glimmer3; putative; type IV pilus biogenesis/stability protein PilW 7274..7828 Aggregatibacter aphrophilus NJ8700 8123309 YP_003006545.1 CDS NT05HA_0009 NC_012913.1 8047 9072 D identified by Glimmer3; putative; hypothetical protein 8047..9072 Aggregatibacter aphrophilus NJ8700 8123310 YP_003006546.1 CDS ispG NC_012913.1 9083 10186 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 9083..10186 Aggregatibacter aphrophilus NJ8700 8123311 YP_003006547.1 CDS hisS NC_012913.1 10211 11488 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 10211..11488 Aggregatibacter aphrophilus NJ8700 8123312 YP_003006548.1 CDS NT05HA_0012 NC_012913.1 11499 12113 D identified by Glimmer3; putative; protein 1057 11499..12113 Aggregatibacter aphrophilus NJ8700 8123313 YP_003006549.1 CDS NT05HA_0013 NC_012913.1 12169 12621 D identified by Glimmer3; putative; isoprenylcysteine carboxyl methyltransferase 12169..12621 Aggregatibacter aphrophilus NJ8700 8123314 YP_003006550.1 CDS NT05HA_0014 NC_012913.1 12631 13335 R identified by Glimmer3; putative; DnaA regulatory inactivator Hda complement(12631..13335) Aggregatibacter aphrophilus NJ8700 8123315 YP_003006551.1 CDS NT05HA_0015 NC_012913.1 13451 14698 R identified by Glimmer3; putative; uracil permease complement(13451..14698) Aggregatibacter aphrophilus NJ8700 8123316 YP_003006552.1 CDS NT05HA_0016 NC_012913.1 14824 15450 R identified by Glimmer3; putative; uracil phosphoribosyltransferase complement(14824..15450) Aggregatibacter aphrophilus NJ8700 8123317 YP_003006553.1 CDS NT05HA_0017 NC_012913.1 15559 17406 R identified by Glimmer3; putative; peptidyl-prolyl cis-trans isomerase D complement(15559..17406) Aggregatibacter aphrophilus NJ8700 8123318 YP_003006554.1 CDS NT05HA_0018 NC_012913.1 17534 19951 R identified by Glimmer3; putative; ATP-dependent protease La complement(17534..19951) Aggregatibacter aphrophilus NJ8700 8123319 YP_003006555.1 CDS NT05HA_0020 NC_012913.1 20400 22145 D putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM 20400..22145 Aggregatibacter aphrophilus NJ8700 8123321 YP_003006556.1 CDS NT05HA_0021 NC_012913.1 22182 22817 D catalyzes the formation of pyruvate and glyoxylate from 4-hydroxy-2-oxoglutarate; or pyruvate and D-glyceraldehyde 3-phosphate from 2-dehydro-3-deoxy-D-glyconate 6-phosphate; keto-hydroxyglutarate-aldolase/keto-deoxy- phosphogluconate aldolase 22182..22817 Aggregatibacter aphrophilus NJ8700 8123322 YP_003006557.1 CDS NT05HA_0022 NC_012913.1 22882 23529 R identified by Glimmer3; putative; superoxide dismutase complement(22882..23529) Aggregatibacter aphrophilus NJ8700 8123323 YP_003006558.1 CDS NT05HA_0023 NC_012913.1 23675 25939 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(23675..25939) Aggregatibacter aphrophilus NJ8700 8123324 YP_003006559.1 CDS NT05HA_0024 NC_012913.1 26165 26866 D identified by Glimmer3; putative; (16Spseudouridylate 516 synthase) (16S pseudouridine 516 synthase) (rRNA-uridine isomerase A) (rRNA pseudouridylate synthase A); ribosomal small subunit pseudouridine synthase A 26165..26866 Aggregatibacter aphrophilus NJ8700 8123325 YP_003006560.1 CDS NT05HA_0025 NC_012913.1 26871 28064 D identified by Glimmer3; putative; bicyclomycin resistance protein 26871..28064 Aggregatibacter aphrophilus NJ8700 8123326 YP_003006561.1 CDS NT05HA_0026 NC_012913.1 28273 28908 D ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA 28273..28908 Aggregatibacter aphrophilus NJ8700 8123327 YP_003006562.1 CDS NT05HA_0027 NC_012913.1 28913 29578 D identified by Glimmer3; putative; heme exporter protein CcmB 28913..29578 Aggregatibacter aphrophilus NJ8700 8123328 YP_003006563.1 CDS NT05HA_0028 NC_012913.1 29589 30329 D identified by Glimmer3; putative; CcmC 29589..30329 Aggregatibacter aphrophilus NJ8700 8123329 YP_003006564.1 CDS NT05HA_0029 NC_012913.1 30345 30551 D identified by Glimmer3; putative; hypothetical protein 30345..30551 Aggregatibacter aphrophilus NJ8700 8123330 YP_003006565.1 CDS NT05HA_0030 NC_012913.1 30548 31066 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 30548..31066 Aggregatibacter aphrophilus NJ8700 8122435 YP_003006566.1 CDS NT05HA_0031 NC_012913.1 31066 33024 D identified by Glimmer3; putative; cytochrome c-type biogenesis protein CcmF 31066..33024 Aggregatibacter aphrophilus NJ8700 8122436 YP_003006567.1 CDS NT05HA_0032 NC_012913.1 33056 33601 D identified by Glimmer3; putative; thiol-disulfide interchange protein 33056..33601 Aggregatibacter aphrophilus NJ8700 8122437 YP_003006568.1 CDS NT05HA_0033 NC_012913.1 33601 34086 D identified by Glimmer3; putative; cytochrome c-type biogenesis protein CcmH 33601..34086 Aggregatibacter aphrophilus NJ8700 8122438 YP_003006569.1 CDS NT05HA_0034 NC_012913.1 34083 35003 D identified by Glimmer3; putative; TPR-repeat-containing protein 34083..35003 Aggregatibacter aphrophilus NJ8700 8122439 YP_003006570.1 CDS NT05HA_0035 NC_012913.1 35292 35834 D identified by Glimmer3; putative; hypothetical protein 35292..35834 Aggregatibacter aphrophilus NJ8700 8122440 YP_003006571.1 CDS NT05HA_0036 NC_012913.1 35848 36135 D identified by Glimmer3; putative; lipoprotein 35848..36135 Aggregatibacter aphrophilus NJ8700 8122441 YP_003006572.1 CDS nrfA NC_012913.1 36518 38131 D catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 36518..38131 Aggregatibacter aphrophilus NJ8700 8122442 YP_003006573.1 CDS NT05HA_0038 NC_012913.1 38204 38860 D part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c nitrite reductase pentaheme subunit 38204..38860 Aggregatibacter aphrophilus NJ8700 8122443 YP_003006574.1 CDS NT05HA_0039 NC_012913.1 38857 39534 D identified by Glimmer3; putative; cytochrome c nitrite reductase, Fe-S protein 38857..39534 Aggregatibacter aphrophilus NJ8700 8122444 YP_003006575.1 CDS NT05HA_0040 NC_012913.1 39531 40496 D identified by Glimmer3; putative; cytochrome c nitrite reductase, NrfD subunit 39531..40496 Aggregatibacter aphrophilus NJ8700 8122445 YP_003006576.1 CDS NT05HA_0041 NC_012913.1 41028 42938 D identified by Glimmer3; putative; cytochrome c-type biogenesis protein CcmF 41028..42938 Aggregatibacter aphrophilus NJ8700 8122446 YP_003006577.1 CDS NT05HA_0042 NC_012913.1 42931 43461 D identified by Glimmer3; putative; thiol-disulfide interchange protein 42931..43461 Aggregatibacter aphrophilus NJ8700 8122447 YP_003006578.1 CDS NT05HA_0043 NC_012913.1 43458 44507 D identified by Glimmer3; putative; cytochrome C-type biogenesis protein 43458..44507 Aggregatibacter aphrophilus NJ8700 8122448 YP_003006579.1 CDS NT05HA_0044 NC_012913.1 44504 45715 D identified by Glimmer3; putative; hypothetical protein 44504..45715 Aggregatibacter aphrophilus NJ8700 8122449 YP_003006580.1 CDS NT05HA_0045 NC_012913.1 45740 47767 R identified by Glimmer3; putative; PTS system glucose-specific transporter subunit IIA complement(45740..47767) Aggregatibacter aphrophilus NJ8700 8122450 YP_003006581.1 CDS NT05HA_0046 NC_012913.1 48170 49279 D identified by Glimmer3; putative; transglutaminase family protein 48170..49279 Aggregatibacter aphrophilus NJ8700 8122451 YP_003006582.1 CDS NT05HA_0047 NC_012913.1 49251 49613 D identified by Glimmer3; putative; MerT 49251..49613 Aggregatibacter aphrophilus NJ8700 8122452 YP_003006583.1 CDS NT05HA_0048 NC_012913.1 49624 49917 D identified by Glimmer3; putative; MerP 49624..49917 Aggregatibacter aphrophilus NJ8700 8122453 YP_003006584.1 CDS NT05HA_0049 NC_012913.1 49992 50561 R identified by Glimmer3; putative; copper/zinc superoxide dismutase complement(49992..50561) Aggregatibacter aphrophilus NJ8700 8122454 YP_003006585.1 CDS NT05HA_0050 NC_012913.1 50742 51497 D identified by Glimmer3; putative; methyltransferase domain-containing protein 50742..51497 Aggregatibacter aphrophilus NJ8700 8122455 YP_003006586.1 CDS recF NC_012913.1 51542 52618 R Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F complement(51542..52618) Aggregatibacter aphrophilus NJ8700 8122456 YP_003006587.1 CDS NT05HA_0052 NC_012913.1 52622 53722 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(52622..53722) Aggregatibacter aphrophilus NJ8700 8122457 YP_003006588.1 CDS dnaA NC_012913.1 53733 55094 R binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein complement(53733..55094) Aggregatibacter aphrophilus NJ8700 8122458 YP_003006589.1 CDS NT05HA_0054 NC_012913.1 55151 55318 R identified by Glimmer3; putative; hypothetical protein complement(55151..55318) Aggregatibacter aphrophilus NJ8700 8122459 YP_003006590.1 CDS rpmH NC_012913.1 55525 55659 D in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 55525..55659 Aggregatibacter aphrophilus NJ8700 8122460 YP_003006591.1 CDS rnpA NC_012913.1 55672 56040 D protein component of RNaseP which catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'terminus; this enzyme also cleaves other RNA substrates; ribonuclease P 55672..56040 Aggregatibacter aphrophilus NJ8700 8122461 YP_003006592.1 CDS NT05HA_0059 NC_012913.1 57933 58046 R identified by Glimmer3; putative; hypothetical protein complement(57933..58046) Aggregatibacter aphrophilus NJ8700 8122463 YP_003006593.1 CDS trmE NC_012913.1 58091 59446 D in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE 58091..59446 Aggregatibacter aphrophilus NJ8700 8122464 YP_003006594.1 CDS nrdG NC_012913.1 59590 60117 R activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein complement(59590..60117) Aggregatibacter aphrophilus NJ8700 8122465 YP_003006595.1 CDS NT05HA_0061 NC_012913.1 60103 60420 D identified by Glimmer3; putative; (Class III anaerobic ribonucleotide reductase smallcomponent); anaerobic ribonucleoside-triphosphate reductase-activating protein 60103..60420 Aggregatibacter aphrophilus NJ8700 8122466 YP_003006596.1 CDS NT05HA_0063 NC_012913.1 60392 60505 D identified by Glimmer3; putative; hypothetical protein 60392..60505 Aggregatibacter aphrophilus NJ8700 8122467 YP_003006597.1 CDS NT05HA_0064 NC_012913.1 60568 62694 R Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase complement(60568..62694) Aggregatibacter aphrophilus NJ8700 8122468 YP_003006598.1 CDS NT05HA_0065 NC_012913.1 62988 69290 R identified by Glimmer3; putative; extracellular matrix protein adhesin A complement(62988..69290) Aggregatibacter aphrophilus NJ8700 8122469 YP_003006599.1 CDS NT05HA_0066 NC_012913.1 69608 71395 R identified by Glimmer3; putative; putative long-chain-fatty-acid--CoA ligase-like protein complement(69608..71395) Aggregatibacter aphrophilus NJ8700 8122470 YP_003006600.1 CDS NT05HA_0067 NC_012913.1 71588 71713 D identified by Glimmer3; putative; hypothetical protein 71588..71713 Aggregatibacter aphrophilus NJ8700 8122471 YP_003006601.1 CDS dnaE NC_012913.1 71676 75152 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 71676..75152 Aggregatibacter aphrophilus NJ8700 8122472 YP_003006602.1 CDS NT05HA_0069 NC_012913.1 75236 76066 R identified by Glimmer3; putative; class II glutamine amidotransferase complement(75236..76066) Aggregatibacter aphrophilus NJ8700 8122473 YP_003006603.1 CDS NT05HA_0070 NC_012913.1 76268 77617 R converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase complement(76268..77617) Aggregatibacter aphrophilus NJ8700 8122474 YP_003006604.1 CDS NT05HA_0071 NC_012913.1 77822 77938 D identified by Glimmer3; putative; argininosuccinate lyase 77822..77938 Aggregatibacter aphrophilus NJ8700 8122475 YP_003006605.1 CDS NT05HA_0072 NC_012913.1 77891 79264 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(77891..79264) Aggregatibacter aphrophilus NJ8700 8122476 YP_003006606.1 CDS NT05HA_0073 NC_012913.1 79375 80163 R identified by Glimmer3; putative; glycosyltransferase sugar-binding domain-containing protein complement(79375..80163) Aggregatibacter aphrophilus NJ8700 8122477 YP_003006607.1 CDS gltX NC_012913.1 80736 82178 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 80736..82178 Aggregatibacter aphrophilus NJ8700 8122481 YP_003006608.1 CDS NT05HA_0079 NC_012913.1 82643 82852 D identified by Glimmer3; putative; cold-shock DNA-binding domain-containing protein 82643..82852 Aggregatibacter aphrophilus NJ8700 8122483 YP_003006609.1 CDS NT05HA_0080 NC_012913.1 82950 83909 R identified by Glimmer3; putative; ribokinase complement(82950..83909) Aggregatibacter aphrophilus NJ8700 8122484 YP_003006610.1 CDS NT05HA_0081 NC_012913.1 84438 85034 D identified by Glimmer3; putative; (Di)nucleoside polyphosphate hydrolase 84438..85034 Aggregatibacter aphrophilus NJ8700 8122485 YP_003006611.1 CDS NT05HA_0082 NC_012913.1 85037 85834 D identified by Glimmer3; putative; hypothetical protein 85037..85834 Aggregatibacter aphrophilus NJ8700 8122486 YP_003006612.1 CDS NT05HA_0083 NC_012913.1 85843 86640 D transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase 85843..86640 Aggregatibacter aphrophilus NJ8700 8122487 YP_003006613.1 CDS thyA NC_012913.1 86637 87488 D ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase 86637..87488 Aggregatibacter aphrophilus NJ8700 8122488 YP_003006614.1 CDS NT05HA_0085 NC_012913.1 87675 88199 D identified by Glimmer3; putative; tRNA-specific adenosine deaminase 87675..88199 Aggregatibacter aphrophilus NJ8700 8122489 YP_003006615.1 CDS NT05HA_0086 NC_012913.1 88301 88861 D orf2; identified by Glimmer3; putative; hypothetical protein 88301..88861 Aggregatibacter aphrophilus NJ8700 8122490 YP_003006616.1 CDS NT05HA_0087 NC_012913.1 88877 89311 D identified by Glimmer3; putative; hypothetical protein 88877..89311 Aggregatibacter aphrophilus NJ8700 8122491 YP_003006617.1 CDS NT05HA_0088 NC_012913.1 89332 90699 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 89332..90699 Aggregatibacter aphrophilus NJ8700 8122492 YP_003006618.1 CDS NT05HA_0089 NC_012913.1 90811 91254 R identified by Glimmer3; putative; WecD protein complement(90811..91254) Aggregatibacter aphrophilus NJ8700 8122493 YP_003006619.1 CDS tpiA NC_012913.1 91430 92221 D Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase 91430..92221 Aggregatibacter aphrophilus NJ8700 8122494 YP_003006620.1 CDS NT05HA_0091 NC_012913.1 92333 93190 D catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase 92333..93190 Aggregatibacter aphrophilus NJ8700 8122495 YP_003006621.1 CDS NT05HA_0092 NC_012913.1 93293 94606 D catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase 93293..94606 Aggregatibacter aphrophilus NJ8700 8122496 YP_003006622.1 CDS NT05HA_0093 NC_012913.1 94713 95189 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 94713..95189 Aggregatibacter aphrophilus NJ8700 8122497 YP_003006623.1 CDS NT05HA_0094 NC_012913.1 95280 95789 D identified by Glimmer3; putative; acetyl-CoA carboxylase, biotin carboxyl carrier protein 95280..95789 Aggregatibacter aphrophilus NJ8700 8122498 YP_003006624.1 CDS NT05HA_0095 NC_012913.1 95831 97177 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 95831..97177 Aggregatibacter aphrophilus NJ8700 8122499 YP_003006625.1 CDS NT05HA_0096 NC_012913.1 97398 98141 D identified by Glimmer3; putative; lipoprotein 97398..98141 Aggregatibacter aphrophilus NJ8700 8122500 YP_003006626.1 CDS era NC_012913.1 98207 99115 R Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era complement(98207..99115) Aggregatibacter aphrophilus NJ8700 8122501 YP_003006627.1 CDS rnc NC_012913.1 99112 99792 R cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III complement(99112..99792) Aggregatibacter aphrophilus NJ8700 8122502 YP_003006628.1 CDS NT05HA_0099 NC_012913.1 99794 100816 R identified by Glimmer3; putative; signal peptidase I complement(99794..100816) Aggregatibacter aphrophilus NJ8700 8122503 YP_003006629.1 CDS NT05HA_0100 NC_012913.1 100828 102645 R binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA complement(100828..102645) Aggregatibacter aphrophilus NJ8700 8122504 YP_003006630.1 CDS NT05HA_0101 NC_012913.1 102661 102789 R identified by Glimmer3; putative; hypothetical protein complement(102661..102789) Aggregatibacter aphrophilus NJ8700 8122505 YP_003006631.1 CDS NT05HA_0102 NC_012913.1 102797 103180 R stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA complement(102797..103180) Aggregatibacter aphrophilus NJ8700 8122506 YP_003006632.1 CDS NT05HA_0103 NC_012913.1 103467 104135 D identified by Glimmer3; putative; uracil-DNA glycosylase 103467..104135 Aggregatibacter aphrophilus NJ8700 8122507 YP_003006633.1 CDS NT05HA_0104 NC_012913.1 104163 104942 D identified by Glimmer3; putative; similar to Sfri_2896; hypothetical protein 104163..104942 Aggregatibacter aphrophilus NJ8700 8122508 YP_003006634.1 CDS NT05HA_0105 NC_012913.1 104939 105499 D identified by Glimmer3; putative; 6-phosphofructokinase 104939..105499 Aggregatibacter aphrophilus NJ8700 8122509 YP_003006635.1 CDS NT05HA_0106 NC_012913.1 105499 106422 D identified by Glimmer3; putative; ferrous-iron efflux pump FieF 105499..106422 Aggregatibacter aphrophilus NJ8700 8122510 YP_003006636.1 CDS NT05HA_0107 NC_012913.1 106479 107444 D catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase 106479..107444 Aggregatibacter aphrophilus NJ8700 8122511 YP_003006637.1 CDS rumB NC_012913.1 107546 108721 R RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase complement(107546..108721) Aggregatibacter aphrophilus NJ8700 8122512 YP_003006638.1 CDS NT05HA_0109 NC_012913.1 108735 109781 R hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase complement(108735..109781) Aggregatibacter aphrophilus NJ8700 8122513 YP_003006639.1 CDS NT05HA_0110 NC_012913.1 109788 110141 R identified by Glimmer3; putative; lipoprotein complement(109788..110141) Aggregatibacter aphrophilus NJ8700 8122514 YP_003006640.1 CDS NT05HA_0111 NC_012913.1 110141 110491 R identified by Glimmer3; putative; histidine triad nucleotide-binding protein 2 complement(110141..110491) Aggregatibacter aphrophilus NJ8700 8121475 YP_003006641.1 CDS NT05HA_0112 NC_012913.1 110803 111654 D identified by Glimmer3; putative; putative formate transporter 1 110803..111654 Aggregatibacter aphrophilus NJ8700 8121476 YP_003006642.1 CDS NT05HA_0113 NC_012913.1 111742 114054 D identified by Glimmer3; putative; formate acetyltransferase 111742..114054 Aggregatibacter aphrophilus NJ8700 8121477 YP_003006643.1 CDS NT05HA_0114 NC_012913.1 114139 114426 D identified by Glimmer3; putative; antibiotic biosynthesis monooxygenase 114139..114426 Aggregatibacter aphrophilus NJ8700 8121478 YP_003006644.1 CDS NT05HA_0115 NC_012913.1 114486 115226 D identified by Glimmer3; putative; pyruvate formate-lyase 1-activating enzyme 114486..115226 Aggregatibacter aphrophilus NJ8700 8121479 YP_003006645.1 CDS NT05HA_0116 NC_012913.1 115331 115477 D identified by Glimmer3; putative; hypothetical protein 115331..115477 Aggregatibacter aphrophilus NJ8700 8121480 YP_003006646.1 CDS NT05HA_0117 NC_012913.1 115486 116349 D identified by Glimmer3; putative; ribosomal protein L11 methyltransferase 115486..116349 Aggregatibacter aphrophilus NJ8700 8121481 YP_003006647.1 CDS NT05HA_0118 NC_012913.1 116421 117833 R identified by Glimmer3; putative; protein SufI complement(116421..117833) Aggregatibacter aphrophilus NJ8700 8121482 YP_003006648.1 CDS NT05HA_0119 NC_012913.1 117834 118577 R identified by Glimmer3; putative; (1-agpacyltransferase) (1-agpat) (lysophosphatidic acid acyltransferase)(lpaat); 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(117834..118577) Aggregatibacter aphrophilus NJ8700 8121483 YP_003006649.1 CDS NT05HA_0120 NC_012913.1 118685 119416 D catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase 118685..119416 Aggregatibacter aphrophilus NJ8700 8121484 YP_003006650.1 CDS NT05HA_0121 NC_012913.1 119409 119915 D identified by Glimmer3; putative; hypothetical protein 119409..119915 Aggregatibacter aphrophilus NJ8700 8121485 YP_003006651.1 CDS NT05HA_0122 NC_012913.1 119999 120676 D identified by Glimmer3; putative; helix-turn-helix containing protein 119999..120676 Aggregatibacter aphrophilus NJ8700 8121486 YP_003006652.1 CDS NT05HA_0123 NC_012913.1 120719 121933 R identified by Glimmer3; putative; TyrP complement(120719..121933) Aggregatibacter aphrophilus NJ8700 8121487 YP_003006653.1 CDS NT05HA_0124 NC_012913.1 122096 123472 R catalyzes the formation of phenol and pyruvate from tyrosine; tyrosine phenol-lyase complement(122096..123472) Aggregatibacter aphrophilus NJ8700 8121488 YP_003006654.1 CDS NT05HA_0125 NC_012913.1 123783 124349 R Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P complement(123783..124349) Aggregatibacter aphrophilus NJ8700 8121489 YP_003006655.1 CDS NT05HA_0126 NC_012913.1 124384 125403 D identified by Glimmer3; putative; DNA repair protein RecO 124384..125403 Aggregatibacter aphrophilus NJ8700 8121490 YP_003006656.1 CDS NT05HA_0127 NC_012913.1 125571 126887 D identified by Glimmer3; putative; opacity-associated protein OapA 125571..126887 Aggregatibacter aphrophilus NJ8700 8121491 YP_003006657.1 CDS NT05HA_0128 NC_012913.1 126950 127327 D identified by Glimmer3; putative; opacity-associated protein OapB 126950..127327 Aggregatibacter aphrophilus NJ8700 8121492 YP_003006658.1 CDS NT05HA_0129 NC_012913.1 127337 127450 R identified by Glimmer3; putative; hypothetical protein complement(127337..127450) Aggregatibacter aphrophilus NJ8700 8121493 YP_003006659.1 CDS NT05HA_0132 NC_012913.1 128440 129255 D catalyzes the formation of L-proline from pyrroline-5-carboxylate; pyrroline-5-carboxylate reductase 128440..129255 Aggregatibacter aphrophilus NJ8700 8121495 YP_003006660.1 CDS NT05HA_0133 NC_012913.1 129255 130415 D putative transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; putative 3-phenylpropionic acid transporter 129255..130415 Aggregatibacter aphrophilus NJ8700 8121496 YP_003006661.1 CDS xerD NC_012913.1 130418 131311 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD 130418..131311 Aggregatibacter aphrophilus NJ8700 8121497 YP_003006662.1 CDS tig NC_012913.1 131476 132774 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 131476..132774 Aggregatibacter aphrophilus NJ8700 8121498 YP_003006663.1 CDS NT05HA_0136 NC_012913.1 132931 133818 R identified by Glimmer3; putative; HflC protein complement(132931..133818) Aggregatibacter aphrophilus NJ8700 8121499 YP_003006664.1 CDS NT05HA_0137 NC_012913.1 133818 135077 R identified by Glimmer3; putative; HflK complement(133818..135077) Aggregatibacter aphrophilus NJ8700 8121500 YP_003006665.1 CDS NT05HA_0138 NC_012913.1 135173 135922 R identified by Glimmer3; putative; putative 4'-phosphopantetheinyl transferase complement(135173..135922) Aggregatibacter aphrophilus NJ8700 8121501 YP_003006666.1 CDS NT05HA_0139 NC_012913.1 135950 137224 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(135950..137224) Aggregatibacter aphrophilus NJ8700 8121502 YP_003006667.1 CDS NT05HA_0140 NC_012913.1 137273 137713 R identified by Glimmer3; putative; hypothetical protein complement(137273..137713) Aggregatibacter aphrophilus NJ8700 8121503 YP_003006668.1 CDS NT05HA_0141 NC_012913.1 137738 138682 R catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase complement(137738..138682) Aggregatibacter aphrophilus NJ8700 8121504 YP_003006669.1 CDS NT05HA_0144 NC_012913.1 141240 141371 R identified by Glimmer3; putative; hypothetical protein complement(141240..141371) Aggregatibacter aphrophilus NJ8700 8121506 YP_003006670.1 CDS NT05HA_0145 NC_012913.1 141505 142893 D identified by Glimmer3; putative; (NAmPRTase)(Nampt) (Pre-B cell-enhancing factor) (Pre-B-cell colony-enhancingfactor 1) (Visfatin); putative nicotinate phosphoribosyltransferase 141505..142893 Aggregatibacter aphrophilus NJ8700 8121507 YP_003006671.1 CDS NT05HA_0146 NC_012913.1 142886 143590 D identified by Glimmer3; putative; hypothetical protein 142886..143590 Aggregatibacter aphrophilus NJ8700 8121508 YP_003006672.1 CDS NT05HA_0147 NC_012913.1 143660 144664 R identified by Glimmer3; putative; NlpB protein complement(143660..144664) Aggregatibacter aphrophilus NJ8700 8121509 YP_003006673.1 CDS NT05HA_0148 NC_012913.1 144777 145670 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(144777..145670) Aggregatibacter aphrophilus NJ8700 8121510 YP_003006674.1 CDS NT05HA_0149 NC_012913.1 145819 146286 D identified by Glimmer3; putative; peroxiredoxin Q 145819..146286 Aggregatibacter aphrophilus NJ8700 8121511 YP_003006675.1 CDS NT05HA_0150 NC_012913.1 146358 147683 R identified by Glimmer3; putative; autotransporter adhesin complement(146358..147683) Aggregatibacter aphrophilus NJ8700 8121512 YP_003006676.1 CDS NT05HA_0151 NC_012913.1 147646 147879 R identified by Glimmer3; putative; hypothetical protein complement(147646..147879) Aggregatibacter aphrophilus NJ8700 8121513 YP_003006677.1 CDS NT05HA_0152 NC_012913.1 147830 148972 R identified by Glimmer3; putative; autotransporter/adhesin Aae complement(147830..148972) Aggregatibacter aphrophilus NJ8700 8121514 YP_003006678.1 CDS NT05HA_0153 NC_012913.1 148993 149112 D identified by Glimmer3; putative; GTP-binding protein TypA/BipA 148993..149112 Aggregatibacter aphrophilus NJ8700 8121515 YP_003006679.1 CDS NT05HA_0154 NC_012913.1 149093 150943 R identified by Glimmer3; putative; hypothetical protein complement(149093..150943) Aggregatibacter aphrophilus NJ8700 8121516 YP_003006680.1 CDS NT05HA_0155 NC_012913.1 151320 152729 D identified by Glimmer3; putative; glutamine synthetase 151320..152729 Aggregatibacter aphrophilus NJ8700 8121517 YP_003006681.1 CDS NT05HA_0156 NC_012913.1 152835 153563 R identified by Glimmer3; putative; protein YegH complement(152835..153563) Aggregatibacter aphrophilus NJ8700 8121518 YP_003006682.1 CDS NT05HA_0157 NC_012913.1 153627 154292 R MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein complement(153627..154292) Aggregatibacter aphrophilus NJ8700 8121519 YP_003006683.1 CDS NT05HA_0158 NC_012913.1 154293 154832 R identified by Glimmer3; putative; (6-o-methylguanine-dna methyltransferase) (mgmt) (o-6-methylguanine-dna-alkyltransferase); methylated-dna--protein-cysteine methyltransferase complement(154293..154832) Aggregatibacter aphrophilus NJ8700 8121520 YP_003006684.1 CDS NT05HA_0159 NC_012913.1 154911 155510 R identified by Glimmer3; putative; (Outer membrane fadLprotein) (Outer membrane flp protein); long-chain fatty acid transport protein complement(154911..155510) Aggregatibacter aphrophilus NJ8700 8121521 YP_003006685.1 CDS NT05HA_0160 NC_012913.1 155609 156388 R identified by Glimmer3; putative; outer membrane protein P1 complement(155609..156388) Aggregatibacter aphrophilus NJ8700 8121522 YP_003006686.1 CDS NT05HA_0161 NC_012913.1 156542 156832 D identified by Glimmer3; putative; DNA mismatch repair protein 156542..156832 Aggregatibacter aphrophilus NJ8700 8121523 YP_003006687.1 CDS NT05HA_0162 NC_012913.1 156901 158292 R identified by Glimmer3; putative; transporter, NadC family complement(156901..158292) Aggregatibacter aphrophilus NJ8700 8121524 YP_003006688.1 CDS NT05HA_0163 NC_012913.1 158386 158532 D identified by Glimmer3; putative; regulator of ribonuclease activity A 158386..158532 Aggregatibacter aphrophilus NJ8700 8121525 YP_003006689.1 CDS NT05HA_0164 NC_012913.1 158483 158983 R regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA complement(158483..158983) Aggregatibacter aphrophilus NJ8700 8121526 YP_003006690.1 CDS NT05HA_0165 NC_012913.1 159035 159940 R catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase complement(159035..159940) Aggregatibacter aphrophilus NJ8700 8121527 YP_003006691.1 CDS NT05HA_0166 NC_012913.1 160051 160788 D identified by Glimmer3; putative; protein YaeB 160051..160788 Aggregatibacter aphrophilus NJ8700 8121528 YP_003006692.1 CDS NT05HA_0167 NC_012913.1 160860 161246 R identified by Glimmer3; putative; transcriptional regulator MerR family protein complement(160860..161246) Aggregatibacter aphrophilus NJ8700 8121529 YP_003006693.1 CDS NT05HA_0168 NC_012913.1 161341 161553 D identified by Glimmer3; putative; heavy metal-binding protein 161341..161553 Aggregatibacter aphrophilus NJ8700 8121530 YP_003006694.1 CDS NT05HA_0169 NC_012913.1 161671 161784 D identified by Glimmer3; putative; hypothetical protein 161671..161784 Aggregatibacter aphrophilus NJ8700 8121531 YP_003006695.1 CDS NT05HA_0170 NC_012913.1 161797 163956 D identified by Glimmer3; putative; copper-translocating P-type ATPase 161797..163956 Aggregatibacter aphrophilus NJ8700 8121532 YP_003006696.1 CDS NT05HA_0171 NC_012913.1 164028 164873 D identified by Glimmer3; putative; membrane protein YoaT 164028..164873 Aggregatibacter aphrophilus NJ8700 8121533 YP_003006697.1 CDS clpX NC_012913.1 164924 166171 R binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX complement(164924..166171) Aggregatibacter aphrophilus NJ8700 8121534 YP_003006698.1 CDS clpP NC_012913.1 166181 166762 R hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit complement(166181..166762) Aggregatibacter aphrophilus NJ8700 8121535 YP_003006699.1 CDS NT05HA_0174 NC_012913.1 166776 167030 R identified by Glimmer3; putative; hypothetical protein complement(166776..167030) Aggregatibacter aphrophilus NJ8700 8121536 YP_003006700.1 CDS NT05HA_0175 NC_012913.1 167034 168611 R identified by Glimmer3; putative; Dca complement(167034..168611) Aggregatibacter aphrophilus NJ8700 8121537 YP_003006701.1 CDS NT05HA_0176 NC_012913.1 168842 171115 D Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; bifunctional glutamate--cysteine ligase/glutathione synthetase 168842..171115 Aggregatibacter aphrophilus NJ8700 8121538 YP_003006702.1 CDS NT05HA_0177 NC_012913.1 171293 173071 R identified by Glimmer3; putative; TadG complement(171293..173071) Aggregatibacter aphrophilus NJ8700 8121539 YP_003006703.1 CDS NT05HA_0178 NC_012913.1 173086 173688 R identified by Glimmer3; putative; TadF complement(173086..173688) Aggregatibacter aphrophilus NJ8700 8121540 YP_003006704.1 CDS NT05HA_0179 NC_012913.1 173765 174325 R identified by Glimmer3; putative; TadE complement(173765..174325) Aggregatibacter aphrophilus NJ8700 8121541 YP_003006705.1 CDS NT05HA_0180 NC_012913.1 174340 175101 R identified by Glimmer3; putative; TadD complement(174340..175101) Aggregatibacter aphrophilus NJ8700 8121542 YP_003006706.1 CDS NT05HA_0181 NC_012913.1 175091 175957 R identified by Glimmer3; putative; TadC complement(175091..175957) Aggregatibacter aphrophilus NJ8700 8121543 YP_003006707.1 CDS NT05HA_0182 NC_012913.1 175954 176838 R identified by Glimmer3; putative; TadB complement(175954..176838) Aggregatibacter aphrophilus NJ8700 8121544 YP_003006708.1 CDS NT05HA_0183 NC_012913.1 176838 178118 R identified by Glimmer3; putative; TadA complement(176838..178118) Aggregatibacter aphrophilus NJ8700 8121545 YP_003006709.1 CDS NT05HA_0184 NC_012913.1 178132 179253 R identified by Glimmer3; putative; TadZ complement(178132..179253) Aggregatibacter aphrophilus NJ8700 8121546 YP_003006710.1 CDS NT05HA_0185 NC_012913.1 179269 179772 R identified by Glimmer3; putative; RcpB complement(179269..179772) Aggregatibacter aphrophilus NJ8700 8121547 YP_003006711.1 CDS NT05HA_0186 NC_012913.1 179769 181151 R identified by Glimmer3; putative; RcpA complement(179769..181151) Aggregatibacter aphrophilus NJ8700 8121548 YP_003006712.1 CDS NT05HA_0187 NC_012913.1 181153 181980 R identified by Glimmer3; putative; RcpC complement(181153..181980) Aggregatibacter aphrophilus NJ8700 8121549 YP_003006713.1 CDS NT05HA_0188 NC_012913.1 182027 182455 R identified by Glimmer3; putative; TadV complement(182027..182455) Aggregatibacter aphrophilus NJ8700 8121550 YP_003006714.1 CDS NT05HA_0189 NC_012913.1 182468 182698 R identified by Glimmer3; putative; hypothetical protein complement(182468..182698) Aggregatibacter aphrophilus NJ8700 8121551 YP_003006715.1 CDS NT05HA_0190 NC_012913.1 182764 182988 R identified by Glimmer3; putative; hypothetical protein complement(182764..182988) Aggregatibacter aphrophilus NJ8700 8121552 YP_003006716.1 CDS NT05HA_0191 NC_012913.1 183550 184644 D identified by Glimmer3; putative; PhoH 183550..184644 Aggregatibacter aphrophilus NJ8700 8121553 YP_003006717.1 CDS NT05HA_0192 NC_012913.1 184700 185164 D OrfX; identified by Glimmer3; putative; putative metalloprotease 184700..185164 Aggregatibacter aphrophilus NJ8700 8121554 YP_003006718.1 CDS NT05HA_0193 NC_012913.1 185330 186031 D identified by Glimmer3; putative; lipoprotein 185330..186031 Aggregatibacter aphrophilus NJ8700 8122666 YP_003006719.1 CDS NT05HA_0194 NC_012913.1 186035 187972 D identified by Glimmer3; putative; acetyltransferase 186035..187972 Aggregatibacter aphrophilus NJ8700 8122667 YP_003006720.1 CDS NT05HA_0195 NC_012913.1 188024 188200 D identified by Glimmer3; putative; hypothetical protein 188024..188200 Aggregatibacter aphrophilus NJ8700 8122668 YP_003006721.1 CDS NT05HA_0196 NC_012913.1 188325 191780 D identified by Glimmer3; putative; transcription-repair coupling factor 188325..191780 Aggregatibacter aphrophilus NJ8700 8122669 YP_003006722.1 CDS NT05HA_0197 NC_012913.1 191812 192207 D identified by Glimmer3; putative; hypothetical protein 191812..192207 Aggregatibacter aphrophilus NJ8700 8122670 YP_003006723.1 CDS NT05HA_0198 NC_012913.1 192204 192338 R identified by Glimmer3; putative; glutathione-dependent formaldehyde-activating protein complement(192204..192338) Aggregatibacter aphrophilus NJ8700 8122671 YP_003006724.1 CDS gmhA NC_012913.1 192490 193074 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 192490..193074 Aggregatibacter aphrophilus NJ8700 8122672 YP_003006725.1 CDS NT05HA_0200 NC_012913.1 193146 194027 D identified by Glimmer3; putative; hypothetical protein 193146..194027 Aggregatibacter aphrophilus NJ8700 8122673 YP_003006726.1 CDS artP NC_012913.1 194171 194905 D With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit 194171..194905 Aggregatibacter aphrophilus NJ8700 8122674 YP_003006727.1 CDS NT05HA_0202 NC_012913.1 194925 195644 D identified by Glimmer3; putative; arginine-binding periplasmic protein 1 194925..195644 Aggregatibacter aphrophilus NJ8700 8122675 YP_003006728.1 CDS NT05HA_0203 NC_012913.1 195648 196313 D with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 195648..196313 Aggregatibacter aphrophilus NJ8700 8122676 YP_003006729.1 CDS artM NC_012913.1 196313 196996 D with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 196313..196996 Aggregatibacter aphrophilus NJ8700 8122677 YP_003006730.1 CDS NT05HA_0205 NC_012913.1 197174 197308 D identified by Glimmer3; putative; arginine-binding periplasmic protein 1 197174..197308 Aggregatibacter aphrophilus NJ8700 8122678 YP_003006731.1 CDS NT05HA_0206 NC_012913.1 197271 197891 D identified by Glimmer3; putative; arginine-binding periplasmic protein 2 197271..197891 Aggregatibacter aphrophilus NJ8700 8122679 YP_003006732.1 CDS NT05HA_0207 NC_012913.1 197925 198158 R identified by Glimmer3; putative; hypothetical protein complement(197925..198158) Aggregatibacter aphrophilus NJ8700 8122680 YP_003006733.1 CDS NT05HA_0208 NC_012913.1 198444 200039 D identified by Glimmer3; putative; transaldolase B 198444..200039 Aggregatibacter aphrophilus NJ8700 8122681 YP_003006734.1 CDS NT05HA_0209 NC_012913.1 200323 200781 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 200323..200781 Aggregatibacter aphrophilus NJ8700 8122682 YP_003006735.1 CDS mraW NC_012913.1 200891 201859 D identified by Glimmer3; putative; S-adenosyl-methyltransferase MraW 200891..201859 Aggregatibacter aphrophilus NJ8700 8122683 YP_003006736.1 CDS NT05HA_0211 NC_012913.1 201859 202176 D identified by Glimmer3; putative; cell division protein FtsL 201859..202176 Aggregatibacter aphrophilus NJ8700 8122684 YP_003006737.1 CDS NT05HA_0212 NC_012913.1 202194 204017 D identified by Glimmer3; putative; (Peptidoglycanglycosyltransferase 3) (Penicillin-binding protein 3) (PBP-3); peptidoglycan synthetase FtsI 202194..204017 Aggregatibacter aphrophilus NJ8700 8122685 YP_003006738.1 CDS murE NC_012913.1 204035 205501 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 204035..205501 Aggregatibacter aphrophilus NJ8700 8122686 YP_003006739.1 CDS NT05HA_0214 NC_012913.1 205509 206888 D identified by Glimmer3; putative; (UDP-MurNAc-pentapeptide synthetase) (D-alanyl-D-alanine-adding enzyme); UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 205509..206888 Aggregatibacter aphrophilus NJ8700 8122687 YP_003006740.1 CDS mraY NC_012913.1 206882 207967 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 206882..207967 Aggregatibacter aphrophilus NJ8700 8122688 YP_003006741.1 CDS murD NC_012913.1 208007 209323 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 208007..209323 Aggregatibacter aphrophilus NJ8700 8122689 YP_003006742.1 CDS NT05HA_0217 NC_012913.1 209337 210527 D identified by Glimmer3; putative; cell division protein FtsW 209337..210527 Aggregatibacter aphrophilus NJ8700 8122690 YP_003006743.1 CDS murG NC_012913.1 210568 211632 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; UDP diphospho-muramoyl pentapeptide beta-N acetylglucosaminyl transferase 210568..211632 Aggregatibacter aphrophilus NJ8700 8122691 YP_003006744.1 CDS murC NC_012913.1 211694 213124 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 211694..213124 Aggregatibacter aphrophilus NJ8700 8122692 YP_003006745.1 CDS ddl NC_012913.1 213141 214070 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 213141..214070 Aggregatibacter aphrophilus NJ8700 8122693 YP_003006746.1 CDS NT05HA_0221 NC_012913.1 214067 214834 D identified by Glimmer3; putative; cell division protein FtsQ 214067..214834 Aggregatibacter aphrophilus NJ8700 8122694 YP_003006747.1 CDS NT05HA_0222 NC_012913.1 214856 216163 D identified by Glimmer3; putative; cell division protein FtsA 214856..216163 Aggregatibacter aphrophilus NJ8700 8122695 YP_003006748.1 CDS NT05HA_0223 NC_012913.1 216219 217502 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 216219..217502 Aggregatibacter aphrophilus NJ8700 8122696 YP_003006749.1 CDS lpxC NC_012913.1 217546 218463 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 217546..218463 Aggregatibacter aphrophilus NJ8700 8122697 YP_003006750.1 CDS NT05HA_0225 NC_012913.1 218492 218608 D identified by Glimmer3; putative; hypothetical protein 218492..218608 Aggregatibacter aphrophilus NJ8700 8122698 YP_003006751.1 CDS NT05HA_0226 NC_012913.1 218634 218771 D identified by Glimmer3; putative; hypothetical protein 218634..218771 Aggregatibacter aphrophilus NJ8700 8122699 YP_003006752.1 CDS NT05HA_0227 NC_012913.1 218843 220006 D identified by Glimmer3; putative; P-protein 218843..220006 Aggregatibacter aphrophilus NJ8700 8122700 YP_003006753.1 CDS NT05HA_0228 NC_012913.1 220070 220705 R identified by Glimmer3; putative; hypothetical protein complement(220070..220705) Aggregatibacter aphrophilus NJ8700 8122701 YP_003006754.1 CDS NT05HA_0229 NC_012913.1 220717 220875 D identified by Glimmer3; putative; hypothetical protein 220717..220875 Aggregatibacter aphrophilus NJ8700 8122702 YP_003006755.1 CDS NT05HA_0230 NC_012913.1 220939 222822 D molecular chaperone; heat shock protein 90 220939..222822 Aggregatibacter aphrophilus NJ8700 8122703 YP_003006756.1 CDS NT05HA_0231 NC_012913.1 222905 223249 D identified by Glimmer3; putative; succinyl-diaminopimelate desuccinylase 222905..223249 Aggregatibacter aphrophilus NJ8700 8122704 YP_003006757.1 CDS NT05HA_0232 NC_012913.1 223344 223526 D identified by Glimmer3; putative; hypothetical protein 223344..223526 Aggregatibacter aphrophilus NJ8700 8122705 YP_003006758.1 CDS NT05HA_0233 NC_012913.1 223548 225503 D identified by Glimmer3; putative; TonB-dependent copper receptor 223548..225503 Aggregatibacter aphrophilus NJ8700 8122706 YP_003006759.1 CDS NT05HA_0234 NC_012913.1 225628 226761 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 225628..226761 Aggregatibacter aphrophilus NJ8700 8122707 YP_003006760.1 CDS NT05HA_0235 NC_012913.1 226763 227449 D identified by Glimmer3; putative; bifunctional aspartokinase I/homoserine dehydrogenase I 226763..227449 Aggregatibacter aphrophilus NJ8700 8122708 YP_003006761.1 CDS NT05HA_0236 NC_012913.1 227737 228360 D identified by Glimmer3; putative; (adp-ribose diphosphatase)(adenosine diphosphoribose pyrophosphatase) (adpr-ppase) (adp-ribosephosphohydrolase) (asppase); adp-ribose pyrophosphatase 227737..228360 Aggregatibacter aphrophilus NJ8700 8122709 YP_003006762.1 CDS NT05HA_0237 NC_012913.1 228416 229240 D identified by Glimmer3; putative; cyclic 3',5'-adenosine monophosphate phosphodiesterase 228416..229240 Aggregatibacter aphrophilus NJ8700 8122710 YP_003006763.1 CDS NT05HA_0238 NC_012913.1 229374 230045 D identified by Glimmer3; putative; ExsB protein 229374..230045 Aggregatibacter aphrophilus NJ8700 8122711 YP_003006764.1 CDS rlmL NC_012913.1 230213 232369 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 230213..232369 Aggregatibacter aphrophilus NJ8700 8122712 YP_003006765.1 CDS NT05HA_0240 NC_012913.1 232499 233887 R identified by Glimmer3; putative; peptidase U32 complement(232499..233887) Aggregatibacter aphrophilus NJ8700 8122713 YP_003006766.1 CDS NT05HA_0241 NC_012913.1 234135 234473 D identified by Glimmer3; putative; cupin 2 234135..234473 Aggregatibacter aphrophilus NJ8700 8122714 YP_003006767.1 CDS NT05HA_0243 NC_012913.1 234879 235643 R 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon complement(234879..235643) Aggregatibacter aphrophilus NJ8700 8122716 YP_003006768.1 CDS rnhA NC_012913.1 235711 236175 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 235711..236175 Aggregatibacter aphrophilus NJ8700 8122717 YP_003006769.1 CDS NT05HA_0245 NC_012913.1 236317 237759 R identified by Glimmer3; putative; inner membrane protein YbhI complement(236317..237759) Aggregatibacter aphrophilus NJ8700 8122718 YP_003006770.1 CDS NT05HA_0246 NC_012913.1 237761 239158 R identified by Glimmer3; putative; apo-citrate lyase phosphoribosyl-dephospho-CoA transferase/2-(5-triphosphoribosyl)-3-dephosphocoenzyme-A synthase complement(237761..239158) Aggregatibacter aphrophilus NJ8700 8122719 YP_003006771.1 CDS NT05HA_0247 NC_012913.1 239256 240758 R identified by Glimmer3; putative; citrate lyase subunit alpha complement(239256..240758) Aggregatibacter aphrophilus NJ8700 8122720 YP_003006772.1 CDS NT05HA_0248 NC_012913.1 240771 241646 R identified by Glimmer3; putative; citrate (pro-3S)-lyase subunit beta complement(240771..241646) Aggregatibacter aphrophilus NJ8700 8122721 YP_003006773.1 CDS NT05HA_0249 NC_012913.1 241637 241930 R acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma complement(241637..241930) Aggregatibacter aphrophilus NJ8700 8122722 YP_003006774.1 CDS NT05HA_0250 NC_012913.1 242084 243109 R identified by Glimmer3; putative; [citrate (pro-3S)-lyase] ligase complement(242084..243109) Aggregatibacter aphrophilus NJ8700 8122723 YP_003006775.1 CDS NT05HA_0251 NC_012913.1 243341 244237 D identified by Glimmer3; putative; magnesium and cobalt efflux protein CorC 243341..244237 Aggregatibacter aphrophilus NJ8700 8122724 YP_003006776.1 CDS lnt NC_012913.1 244418 245974 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 244418..245974 Aggregatibacter aphrophilus NJ8700 8122725 YP_003006777.1 CDS infA NC_012913.1 246029 246247 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(246029..246247) Aggregatibacter aphrophilus NJ8700 8122726 YP_003006778.1 CDS NT05HA_0254 NC_012913.1 246548 247849 D catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 246548..247849 Aggregatibacter aphrophilus NJ8700 8122727 YP_003006779.1 CDS ndk NC_012913.1 247861 248280 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 247861..248280 Aggregatibacter aphrophilus NJ8700 8122728 YP_003006780.1 CDS NT05HA_0256 NC_012913.1 249323 250099 D identified by Glimmer3; putative; VI polysaccharide biosynthesis protein VipA/tviB 249323..250099 Aggregatibacter aphrophilus NJ8700 8122729 YP_003006781.1 CDS NT05HA_0257 NC_012913.1 250077 250808 D identified by Glimmer3; putative; tyrosine-protein kinase wzc 250077..250808 Aggregatibacter aphrophilus NJ8700 8122730 YP_003006782.1 CDS NT05HA_0258 NC_012913.1 251004 252065 R identified by Glimmer3; putative; hypothetical protein complement(251004..252065) Aggregatibacter aphrophilus NJ8700 8122731 YP_003006783.1 CDS NT05HA_0259 NC_012913.1 252465 258218 D identified by Glimmer3; putative; Rhs family protein 252465..258218 Aggregatibacter aphrophilus NJ8700 8122732 YP_003006784.1 CDS NT05HA_0260 NC_012913.1 258231 258515 D identified by Glimmer3; putative; (Crystal violet resistance protein) (10-N-nonyl acridineorange resistance protein); protein SGE1 258231..258515 Aggregatibacter aphrophilus NJ8700 8122733 YP_003006785.1 CDS NT05HA_0261 NC_012913.1 258975 259988 D identified by Glimmer3; putative; protein RhsC 258975..259988 Aggregatibacter aphrophilus NJ8700 8122734 YP_003006786.1 CDS NT05HA_0262 NC_012913.1 260001 260543 D identified by Glimmer3; putative; hypothetical protein 260001..260543 Aggregatibacter aphrophilus NJ8700 8122735 YP_003006787.1 CDS NT05HA_0263 NC_012913.1 260643 260771 R identified by Glimmer3; putative; hypothetical protein complement(260643..260771) Aggregatibacter aphrophilus NJ8700 8122736 YP_003006788.1 CDS NT05HA_0264 NC_012913.1 260762 261433 R identified by Glimmer3; putative; hypothetical protein complement(260762..261433) Aggregatibacter aphrophilus NJ8700 8122737 YP_003006789.1 CDS NT05HA_0265 NC_012913.1 261501 262799 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(261501..262799) Aggregatibacter aphrophilus NJ8700 8122738 YP_003006790.1 CDS NT05HA_0266 NC_012913.1 262885 263850 R identified by Glimmer3; putative; methyltransferase complement(262885..263850) Aggregatibacter aphrophilus NJ8700 8122739 YP_003006791.1 CDS NT05HA_0267 NC_012913.1 263865 265385 R identified by Glimmer3; putative; sodium/proline symporter complement(263865..265385) Aggregatibacter aphrophilus NJ8700 8122740 YP_003006792.1 CDS NT05HA_0268 NC_012913.1 265531 267006 D involved in the processing of the 5'end of 16S rRNA; ribonuclease G 265531..267006 Aggregatibacter aphrophilus NJ8700 8122741 YP_003006793.1 CDS NT05HA_0269 NC_012913.1 267212 267859 D cofactor involved in the reduction of disulfides; glutaredoxin 2 267212..267859 Aggregatibacter aphrophilus NJ8700 8122742 YP_003006794.1 CDS NT05HA_0270 NC_012913.1 267874 268572 D identified by Glimmer3; putative; Sir2 family transcriptional regulator 267874..268572 Aggregatibacter aphrophilus NJ8700 8122743 YP_003006795.1 CDS NT05HA_0271 NC_012913.1 268629 269819 D identified by Glimmer3; putative; hypothetical protein 268629..269819 Aggregatibacter aphrophilus NJ8700 8122744 YP_003006796.1 CDS NT05HA_0272 NC_012913.1 269952 270689 D identified by Glimmer3; putative; molybdate ABC transporter substrate-binding protein 269952..270689 Aggregatibacter aphrophilus NJ8700 8122745 YP_003006797.1 CDS NT05HA_0273 NC_012913.1 270664 271461 D identified by Glimmer3; putative; hypothetical protein 270664..271461 Aggregatibacter aphrophilus NJ8700 8122195 YP_003006798.1 CDS NT05HA_0274 NC_012913.1 271463 272062 D identified by Glimmer3; putative; (Sulfate-transporting ATPase); sulfate/thiosulfate import ATP-binding protein CysA 271463..272062 Aggregatibacter aphrophilus NJ8700 8122196 YP_003006799.1 CDS NT05HA_0275 NC_012913.1 272072 272917 D involved in molybdenum transport; molybdenum transport protein ModD 272072..272917 Aggregatibacter aphrophilus NJ8700 8122197 YP_003006800.1 CDS NT05HA_0276 NC_012913.1 273132 274580 D identified by Glimmer3; putative; TldD 273132..274580 Aggregatibacter aphrophilus NJ8700 8122198 YP_003006801.1 CDS NT05HA_0277 NC_012913.1 274623 280394 D identified by Glimmer3; putative; alpha-2-macroglobulin domain-containing protein 274623..280394 Aggregatibacter aphrophilus NJ8700 8122199 YP_003006802.1 CDS NT05HA_0278 NC_012913.1 280506 282866 D identified by Glimmer3; putative; penicillin-binding protein 1C 280506..282866 Aggregatibacter aphrophilus NJ8700 8122200 YP_003006803.1 CDS NT05HA_0281 NC_012913.1 284989 285390 D identified by Glimmer3; putative; Rhs element Vgr protein 284989..285390 Aggregatibacter aphrophilus NJ8700 8122202 YP_003006804.1 CDS NT05HA_0282 NC_012913.1 285394 287568 D identified by Glimmer3; putative; phospholipase D/Transphosphatidylase 285394..287568 Aggregatibacter aphrophilus NJ8700 8122203 YP_003006805.1 CDS NT05HA_0283 NC_012913.1 287570 288727 D identified by Glimmer3; putative; Sel1 domain-containing protein 287570..288727 Aggregatibacter aphrophilus NJ8700 8122204 YP_003006806.1 CDS NT05HA_0284 NC_012913.1 288840 289994 D identified by Glimmer3; putative; hypothetical protein 288840..289994 Aggregatibacter aphrophilus NJ8700 8122205 YP_003006807.1 CDS NT05HA_0285 NC_012913.1 289953 290078 R identified by Glimmer3; putative; Sel1 complement(289953..290078) Aggregatibacter aphrophilus NJ8700 8122206 YP_003006808.1 CDS NT05HA_0286 NC_012913.1 290108 290866 D identified by Glimmer3; putative; Sel1 290108..290866 Aggregatibacter aphrophilus NJ8700 8122207 YP_003006809.1 CDS NT05HA_0287 NC_012913.1 290956 291288 D identified by Glimmer3; putative; Sel1 domain-containing protein 290956..291288 Aggregatibacter aphrophilus NJ8700 8122208 YP_003006810.1 CDS NT05HA_0288 NC_012913.1 291608 292405 D identified by Glimmer3; putative; VgrG protein 291608..292405 Aggregatibacter aphrophilus NJ8700 8122209 YP_003006811.1 CDS NT05HA_0289 NC_012913.1 292507 294927 D identified by Glimmer3; putative; glycoside hydrolase, family 19 292507..294927 Aggregatibacter aphrophilus NJ8700 8122210 YP_003006812.1 CDS NT05HA_0290 NC_012913.1 294995 295126 R identified by Glimmer3; putative; hypothetical protein complement(294995..295126) Aggregatibacter aphrophilus NJ8700 8122211 YP_003006813.1 CDS NT05HA_0291 NC_012913.1 295321 295875 D identified by Glimmer3; putative; hypothetical protein 295321..295875 Aggregatibacter aphrophilus NJ8700 8122212 YP_003006814.1 CDS NT05HA_0292 NC_012913.1 296028 296870 D identified by Glimmer3; putative; Rhs element Vgr protein 296028..296870 Aggregatibacter aphrophilus NJ8700 8122213 YP_003006815.1 CDS NT05HA_0293 NC_012913.1 297109 297330 D identified by Glimmer3; putative; hypothetical protein 297109..297330 Aggregatibacter aphrophilus NJ8700 8122214 YP_003006816.1 CDS NT05HA_0294 NC_012913.1 297332 298009 D identified by Glimmer3; putative; hypothetical protein 297332..298009 Aggregatibacter aphrophilus NJ8700 8122215 YP_003006817.1 CDS NT05HA_0295 NC_012913.1 298635 299273 D identified by Glimmer3; putative; hypothetical protein 298635..299273 Aggregatibacter aphrophilus NJ8700 8122216 YP_003006818.1 CDS NT05HA_0296 NC_012913.1 299367 300695 R identified by Glimmer3; putative; symporter YdjN complement(299367..300695) Aggregatibacter aphrophilus NJ8700 8122217 YP_003006819.1 CDS NT05HA_0297 NC_012913.1 300862 302352 R catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase complement(300862..302352) Aggregatibacter aphrophilus NJ8700 8122218 YP_003006820.1 CDS NT05HA_0298 NC_012913.1 302503 303606 D identified by Glimmer3; putative; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 302503..303606 Aggregatibacter aphrophilus NJ8700 8122219 YP_003006821.1 CDS NT05HA_0299 NC_012913.1 303612 304679 D identified by Glimmer3; putative; permease 303612..304679 Aggregatibacter aphrophilus NJ8700 8122220 YP_003006822.1 CDS metF NC_012913.1 304856 305740 D MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase 304856..305740 Aggregatibacter aphrophilus NJ8700 8122221 YP_003006823.1 CDS NT05HA_0301 NC_012913.1 305717 305854 R identified by Glimmer3; putative; 5,10-methylenetetrahydrofolate reductase complement(305717..305854) Aggregatibacter aphrophilus NJ8700 8122222 YP_003006824.1 CDS NT05HA_0302 NC_012913.1 305824 306609 R identified by Glimmer3; putative; high-affinity zinc uptake system membrane protein ZnuB complement(305824..306609) Aggregatibacter aphrophilus NJ8700 8122223 YP_003006825.1 CDS NT05HA_0303 NC_012913.1 306620 307393 R identified by Glimmer3; putative; zinc import ATP-binding protein ZnuC complement(306620..307393) Aggregatibacter aphrophilus NJ8700 8122224 YP_003006826.1 CDS NT05HA_0304 NC_012913.1 307448 307561 R identified by Glimmer3; putative; hypothetical protein complement(307448..307561) Aggregatibacter aphrophilus NJ8700 8122225 YP_003006827.1 CDS NT05HA_0305 NC_012913.1 307779 309116 D identified by Glimmer3; putative; NlpD protein 307779..309116 Aggregatibacter aphrophilus NJ8700 8122226 YP_003006828.1 CDS NT05HA_0306 NC_012913.1 309169 309294 R identified by Glimmer3; putative; hypothetical protein complement(309169..309294) Aggregatibacter aphrophilus NJ8700 8122227 YP_003006829.1 CDS NT05HA_0307 NC_012913.1 309358 309504 R identified by Glimmer3; putative; lipoprotein complement(309358..309504) Aggregatibacter aphrophilus NJ8700 8122228 YP_003006830.1 CDS NT05HA_0308 NC_012913.1 309657 310148 D identified by Glimmer3; putative; YbaK/prolyl-tRNA synthetase associated region 309657..310148 Aggregatibacter aphrophilus NJ8700 8122229 YP_003006831.1 CDS NT05HA_0309 NC_012913.1 310231 311181 R catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase complement(310231..311181) Aggregatibacter aphrophilus NJ8700 8122230 YP_003006832.1 CDS cca NC_012913.1 312860 314131 R catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase complement(312860..314131) Aggregatibacter aphrophilus NJ8700 8122233 YP_003006833.1 CDS NT05HA_0315 NC_012913.1 314131 314742 R identified by Glimmer3; putative; SH3 domain-containing protein complement(314131..314742) Aggregatibacter aphrophilus NJ8700 8122234 YP_003006834.1 CDS NT05HA_0316 NC_012913.1 314810 316075 R identified by Glimmer3; putative; phosphate permease complement(314810..316075) Aggregatibacter aphrophilus NJ8700 8122235 YP_003006835.1 CDS NT05HA_0317 NC_012913.1 316100 316573 R identified by Glimmer3; putative; hypothetical protein complement(316100..316573) Aggregatibacter aphrophilus NJ8700 8122236 YP_003006836.1 CDS NT05HA_0318 NC_012913.1 316922 317992 D identified by Glimmer3; putative; adenylate cyclase 316922..317992 Aggregatibacter aphrophilus NJ8700 8122237 YP_003006837.1 CDS NT05HA_0319 NC_012913.1 318003 319376 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 318003..319376 Aggregatibacter aphrophilus NJ8700 8122238 YP_003006838.1 CDS NT05HA_0320 NC_012913.1 319430 320011 D mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator 319430..320011 Aggregatibacter aphrophilus NJ8700 8122239 YP_003006839.1 CDS lolA NC_012913.1 322895 323512 D participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein 322895..323512 Aggregatibacter aphrophilus NJ8700 8122241 YP_003006840.1 CDS NT05HA_0324 NC_012913.1 323525 324865 D identified by Glimmer3; putative; recombination factor protein RarA 323525..324865 Aggregatibacter aphrophilus NJ8700 8122242 YP_003006841.1 CDS NT05HA_0325 NC_012913.1 325270 326937 R identified by Glimmer3; putative; C4-dicarboxylate membrane transporter complement(325270..326937) Aggregatibacter aphrophilus NJ8700 8122243 YP_003006842.1 CDS NT05HA_0326 NC_012913.1 327236 328543 D identified by Glimmer3; putative; seryl-tRNA synthetase 327236..328543 Aggregatibacter aphrophilus NJ8700 8122244 YP_003006843.1 CDS NT05HA_0327 NC_012913.1 328642 331575 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(328642..331575) Aggregatibacter aphrophilus NJ8700 8122245 YP_003006844.1 CDS NT05HA_0328 NC_012913.1 331822 334113 D identified by Glimmer3; putative; CRISPR-associated helicase Cas3 domain-containing protein 331822..334113 Aggregatibacter aphrophilus NJ8700 8122246 YP_003006845.1 CDS NT05HA_0329 NC_012913.1 334191 335945 D identified by Glimmer3; putative; hypothetical protein 334191..335945 Aggregatibacter aphrophilus NJ8700 8122247 YP_003006846.1 CDS NT05HA_0330 NC_012913.1 336034 336708 D identified by Glimmer3; putative; CRISPR-associated protein Cas5 336034..336708 Aggregatibacter aphrophilus NJ8700 8122248 YP_003006847.1 CDS NT05HA_0331 NC_012913.1 336705 338495 D identified by Glimmer3; putative; Csd1 family CRISPR-associated protein 336705..338495 Aggregatibacter aphrophilus NJ8700 8122249 YP_003006848.1 CDS NT05HA_0332 NC_012913.1 338507 339373 D identified by Glimmer3; putative; Csd2 family CRISPR-associated protein 338507..339373 Aggregatibacter aphrophilus NJ8700 8122250 YP_003006849.1 CDS NT05HA_0333 NC_012913.1 339389 340054 D identified by Glimmer3; putative; CRISPR-associated protein Cas4 339389..340054 Aggregatibacter aphrophilus NJ8700 8122251 YP_003006850.1 CDS NT05HA_0334 NC_012913.1 340068 340748 D identified by Glimmer3; putative; hypothetical protein 340068..340748 Aggregatibacter aphrophilus NJ8700 8122252 YP_003006851.1 CDS NT05HA_0335 NC_012913.1 340835 341848 D identified by Glimmer3; putative; CRISPR-associated protein Cas1 340835..341848 Aggregatibacter aphrophilus NJ8700 8122253 YP_003006852.1 CDS NT05HA_0336 NC_012913.1 341852 342145 D identified by Glimmer3; putative; CRISPR-associated protein Cas2 341852..342145 Aggregatibacter aphrophilus NJ8700 8122254 YP_003006853.1 CDS NT05HA_0337 NC_012913.1 343147 344811 R identified by Glimmer3; putative; PTS system transporter subunit IIBC complement(343147..344811) Aggregatibacter aphrophilus NJ8700 8122255 YP_003006854.1 CDS NT05HA_0338 NC_012913.1 344822 345613 R identified by Glimmer3; putative; metal-dependent hydrolase complement(344822..345613) Aggregatibacter aphrophilus NJ8700 8122256 YP_003006855.1 CDS NT05HA_0339 NC_012913.1 345623 349396 R identified by Glimmer3; putative; maltodextrin phosphorylase complement(345623..349396) Aggregatibacter aphrophilus NJ8700 8122257 YP_003006856.1 CDS NT05HA_0340 NC_012913.1 349596 350309 D identified by Glimmer3; putative; trehalose operon transcriptional repressor 349596..350309 Aggregatibacter aphrophilus NJ8700 8122258 YP_003006857.1 CDS NT05HA_0341 NC_012913.1 350448 352721 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase complement(350448..352721) Aggregatibacter aphrophilus NJ8700 8122259 YP_003006858.1 CDS NT05HA_0343 NC_012913.1 352808 352987 R identified by Glimmer3; putative; transcriptional activator MetR complement(352808..352987) Aggregatibacter aphrophilus NJ8700 8122260 YP_003006859.1 CDS NT05HA_0342 NC_012913.1 352986 353918 D identified by Glimmer3; putative; hypothetical protein 352986..353918 Aggregatibacter aphrophilus NJ8700 8122261 YP_003006860.1 CDS NT05HA_0344 NC_012913.1 353923 354654 D identified by Glimmer3; putative; azaleucine resistance protein AzlC 353923..354654 Aggregatibacter aphrophilus NJ8700 8122262 YP_003006861.1 CDS NT05HA_0345 NC_012913.1 354651 354983 D identified by Glimmer3; putative; branched-chain amino acid transport protein AzlD 354651..354983 Aggregatibacter aphrophilus NJ8700 8122263 YP_003006862.1 CDS NT05HA_0346 NC_012913.1 355050 357842 R identified by Glimmer3; putative; PqqL complement(355050..357842) Aggregatibacter aphrophilus NJ8700 8122264 YP_003006863.1 CDS NT05HA_0347 NC_012913.1 357902 360268 R identified by Glimmer3; putative; TonB-dependent receptor complement(357902..360268) Aggregatibacter aphrophilus NJ8700 8122265 YP_003006864.1 CDS NT05HA_0348 NC_012913.1 360561 361454 D identified by Glimmer3; putative; coproporphyrinogen III oxidase 360561..361454 Aggregatibacter aphrophilus NJ8700 8122266 YP_003006865.1 CDS NT05HA_0349 NC_012913.1 361447 362124 D identified by Glimmer3; putative; cytidylate kinase 361447..362124 Aggregatibacter aphrophilus NJ8700 8122267 YP_003006866.1 CDS rpsA NC_012913.1 362223 363869 D in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 362223..363869 Aggregatibacter aphrophilus NJ8700 8122268 YP_003006867.1 CDS NT05HA_0351 NC_012913.1 363932 364216 D identified by Glimmer3; putative; integration host factor subunit beta 363932..364216 Aggregatibacter aphrophilus NJ8700 8122269 YP_003006868.1 CDS NT05HA_0352 NC_012913.1 364315 364611 D identified by Glimmer3; putative; hypothetical protein 364315..364611 Aggregatibacter aphrophilus NJ8700 8122270 YP_003006869.1 CDS NT05HA_0353 NC_012913.1 364611 365801 D identified by Glimmer3; putative; hypothetical protein 364611..365801 Aggregatibacter aphrophilus NJ8700 8122271 YP_003006870.1 CDS NT05HA_0356 NC_012913.1 366535 366852 D identified by Glimmer3; putative; translation intiation factor Sui1 366535..366852 Aggregatibacter aphrophilus NJ8700 8122273 YP_003006871.1 CDS NT05HA_0357 NC_012913.1 366890 367165 R identified by Glimmer3; putative; acetyl-CoA carboxylase subunit beta complement(366890..367165) Aggregatibacter aphrophilus NJ8700 8122274 YP_003006872.1 CDS NT05HA_0358 NC_012913.1 367308 369965 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(367308..369965) Aggregatibacter aphrophilus NJ8700 8123063 YP_003006873.1 CDS NT05HA_0359 NC_012913.1 370153 370908 D Involved in ubiquinone biosynthesis; 3-demethylubiquinone-9 3-methyltransferase 370153..370908 Aggregatibacter aphrophilus NJ8700 8123064 YP_003006874.1 CDS NT05HA_0360 NC_012913.1 370974 371414 R identified by Glimmer3; putative; ferric uptake regulation protein complement(370974..371414) Aggregatibacter aphrophilus NJ8700 8123065 YP_003006875.1 CDS NT05HA_0361 NC_012913.1 371434 371958 R An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA complement(371434..371958) Aggregatibacter aphrophilus NJ8700 8123066 YP_003006876.1 CDS NT05HA_0362 NC_012913.1 371966 372247 R identified by Glimmer3; putative; LexA regulated protein complement(371966..372247) Aggregatibacter aphrophilus NJ8700 8123067 YP_003006877.1 CDS NT05HA_0363 NC_012913.1 372370 373170 R identified by Glimmer3; putative; esterase YbfF complement(372370..373170) Aggregatibacter aphrophilus NJ8700 8123068 YP_003006878.1 CDS NT05HA_0364 NC_012913.1 373257 373874 D negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA 373257..373874 Aggregatibacter aphrophilus NJ8700 8123069 YP_003006879.1 CDS NT05HA_0365 NC_012913.1 373877 375304 D identified by Glimmer3; putative; O-succinylbenzoic acid--CoA ligase 373877..375304 Aggregatibacter aphrophilus NJ8700 8123070 YP_003006880.1 CDS NT05HA_0366 NC_012913.1 375307 378633 D small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA 375307..378633 Aggregatibacter aphrophilus NJ8700 8123071 YP_003006881.1 CDS NT05HA_0367 NC_012913.1 378656 379729 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 378656..379729 Aggregatibacter aphrophilus NJ8700 8123072 YP_003006882.1 CDS mepA NC_012913.1 379748 380620 D D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase 379748..380620 Aggregatibacter aphrophilus NJ8700 8123073 YP_003006883.1 CDS NT05HA_0369 NC_012913.1 380624 381391 D identified by Glimmer3; putative; inner membrane protein YfcA 380624..381391 Aggregatibacter aphrophilus NJ8700 8123074 YP_003006884.1 CDS NT05HA_0370 NC_012913.1 381428 382384 D Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 381428..382384 Aggregatibacter aphrophilus NJ8700 8123075 YP_003006885.1 CDS NT05HA_0371 NC_012913.1 382406 383017 D identified by Glimmer3; putative; adenine phosphoribosyltransferase 382406..383017 Aggregatibacter aphrophilus NJ8700 8123076 YP_003006886.1 CDS NT05HA_0372 NC_012913.1 383055 385097 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau 383055..385097 Aggregatibacter aphrophilus NJ8700 8123077 YP_003006887.1 CDS NT05HA_0373 NC_012913.1 385110 385970 D identified by Glimmer3; putative; hypothetical protein 385110..385970 Aggregatibacter aphrophilus NJ8700 8123078 YP_003006888.1 CDS NT05HA_0374 NC_012913.1 385967 386320 R identified by Glimmer3; putative; similar to VV1_1880; hypothetical protein complement(385967..386320) Aggregatibacter aphrophilus NJ8700 8123079 YP_003006889.1 CDS NT05HA_0375 NC_012913.1 386431 387147 D identified by Glimmer3; putative; hypothetical protein 386431..387147 Aggregatibacter aphrophilus NJ8700 8123080 YP_003006890.1 CDS NT05HA_0376 NC_012913.1 387150 387335 D identified by Glimmer3; putative; hypothetical protein 387150..387335 Aggregatibacter aphrophilus NJ8700 8123081 YP_003006891.1 CDS NT05HA_0377 NC_012913.1 387358 387867 D identified by Glimmer3; putative; Sel1 domain-containing protein 387358..387867 Aggregatibacter aphrophilus NJ8700 8123082 YP_003006892.1 CDS NT05HA_0378 NC_012913.1 388010 389989 R Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II complement(388010..389989) Aggregatibacter aphrophilus NJ8700 8123083 YP_003006893.1 CDS NT05HA_0379 NC_012913.1 390114 390902 R identified by Glimmer3; putative; (nadh-dependent enoyl-acp reductase); enoyl-ACP reductase complement(390114..390902) Aggregatibacter aphrophilus NJ8700 8123084 YP_003006894.1 CDS NT05HA_0380 NC_012913.1 390993 391748 R identified by Glimmer3; putative; hypothetical protein complement(390993..391748) Aggregatibacter aphrophilus NJ8700 8123085 YP_003006895.1 CDS NT05HA_0381 NC_012913.1 391972 392601 R identified by Glimmer3; putative; NrdG protein complement(391972..392601) Aggregatibacter aphrophilus NJ8700 8123086 YP_003006896.1 CDS NT05HA_0382 NC_012913.1 392607 393032 R identified by Glimmer3; putative; queuosine biosynthesis protein QueD complement(392607..393032) Aggregatibacter aphrophilus NJ8700 8123087 YP_003006897.1 CDS NT05HA_0385 NC_012913.1 395148 395726 D identified by Glimmer3; putative; DeoR family transcriptional regulator 395148..395726 Aggregatibacter aphrophilus NJ8700 8123089 YP_003006898.1 CDS NT05HA_0386 NC_012913.1 395790 396404 D identified by Glimmer3; putative; hypothetical protein 395790..396404 Aggregatibacter aphrophilus NJ8700 8123090 YP_003006899.1 CDS NT05HA_0387 NC_012913.1 396537 397487 R involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase complement(396537..397487) Aggregatibacter aphrophilus NJ8700 8123091 YP_003006900.1 CDS NT05HA_0388 NC_012913.1 397552 398058 D identified by Glimmer3; putative; hypothetical protein 397552..398058 Aggregatibacter aphrophilus NJ8700 8123092 YP_003006901.1 CDS NT05HA_0389 NC_012913.1 398055 400196 R identified by Glimmer3; putative; similar to y1583; hypothetical protein complement(398055..400196) Aggregatibacter aphrophilus NJ8700 8123093 YP_003006902.1 CDS NT05HA_0390 NC_012913.1 400219 400680 R identified by Glimmer3; putative; hypothetical protein complement(400219..400680) Aggregatibacter aphrophilus NJ8700 8123094 YP_003006903.1 CDS mgsA NC_012913.1 400683 401141 R catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase complement(400683..401141) Aggregatibacter aphrophilus NJ8700 8123095 YP_003006904.1 CDS NT05HA_0392 NC_012913.1 401215 401886 R identified by Glimmer3; putative; hypothetical protein complement(401215..401886) Aggregatibacter aphrophilus NJ8700 8123096 YP_003006905.1 CDS NT05HA_0393 NC_012913.1 402041 402313 D catalyzes the hydrolysis of acylphosphate; acylphosphatase 402041..402313 Aggregatibacter aphrophilus NJ8700 8123097 YP_003006906.1 CDS NT05HA_0394 NC_012913.1 402288 403136 R identified by Glimmer3; putative; acylphosphatase complement(402288..403136) Aggregatibacter aphrophilus NJ8700 8123098 YP_003006907.1 CDS NT05HA_0395 NC_012913.1 403133 403990 R identified by Glimmer3; putative; AfeC complement(403133..403990) Aggregatibacter aphrophilus NJ8700 8123099 YP_003006908.1 CDS NT05HA_0396 NC_012913.1 403990 404880 R identified by Glimmer3; putative; AfeB complement(403990..404880) Aggregatibacter aphrophilus NJ8700 8123100 YP_003006909.1 CDS NT05HA_0397 NC_012913.1 404880 405761 R identified by Glimmer3; putative; AfeA complement(404880..405761) Aggregatibacter aphrophilus NJ8700 8123101 YP_003006910.1 CDS NT05HA_0398 NC_012913.1 405871 406200 R identified by Glimmer3; putative; sulfurtransferase TusE complement(405871..406200) Aggregatibacter aphrophilus NJ8700 8123102 YP_003006911.1 CDS NT05HA_0399 NC_012913.1 406286 406948 R identified by Glimmer3; putative; inner membrane protein YccA complement(406286..406948) Aggregatibacter aphrophilus NJ8700 8123103 YP_003006912.1 CDS NT05HA_0400 NC_012913.1 407126 407533 R identified by Glimmer3; putative; hypothetical protein complement(407126..407533) Aggregatibacter aphrophilus NJ8700 8123104 YP_003006913.1 CDS NT05HA_0401 NC_012913.1 407672 407980 R identified by Glimmer3; putative; lipoprotein complement(407672..407980) Aggregatibacter aphrophilus NJ8700 8123105 YP_003006914.1 CDS NT05HA_0402 NC_012913.1 408149 409912 R identified by Glimmer3; putative; protein YcaO complement(408149..409912) Aggregatibacter aphrophilus NJ8700 8123106 YP_003006915.1 CDS NT05HA_0403 NC_012913.1 410008 411210 R identified by Glimmer3; putative; mannose-6-phosphate isomerase, class I complement(410008..411210) Aggregatibacter aphrophilus NJ8700 8123107 YP_003006916.1 CDS NT05HA_0404 NC_012913.1 411414 411746 D identified by Glimmer3; putative; protein YegP 411414..411746 Aggregatibacter aphrophilus NJ8700 8123108 YP_003006917.1 CDS NT05HA_0405 NC_012913.1 411959 413452 D identified by Glimmer3; putative; PTS system maltose and glucose-specific transporter subunit IIBC 411959..413452 Aggregatibacter aphrophilus NJ8700 8123109 YP_003006918.1 CDS NT05HA_0406 NC_012913.1 413523 414218 R identified by Glimmer3; putative; SmtA protein complement(413523..414218) Aggregatibacter aphrophilus NJ8700 8123110 YP_003006919.1 CDS NT05HA_0407 NC_012913.1 414239 414940 D identified by Glimmer3; putative; hydroxyacylglutathione hydrolase 414239..414940 Aggregatibacter aphrophilus NJ8700 8123111 YP_003006920.1 CDS hemA NC_012913.1 415256 416560 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 415256..416560 Aggregatibacter aphrophilus NJ8700 8123112 YP_003006921.1 CDS NT05HA_0409 NC_012913.1 416623 417846 D identified by Glimmer3; putative; protein mlc 416623..417846 Aggregatibacter aphrophilus NJ8700 8123113 YP_003006922.1 CDS NT05HA_0414 NC_012913.1 418549 420321 R identified by Glimmer3; putative; gamma-glutamyltransferase complement(418549..420321) Aggregatibacter aphrophilus NJ8700 8123118 YP_003006923.1 CDS NT05HA_0415 NC_012913.1 420565 420810 R identified by Glimmer3; putative; hypothetical protein complement(420565..420810) Aggregatibacter aphrophilus NJ8700 8123119 YP_003006924.1 CDS NT05HA_0416 NC_012913.1 421058 422395 R catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase complement(421058..422395) Aggregatibacter aphrophilus NJ8700 8123120 YP_003006925.1 CDS NT05HA_0417 NC_012913.1 422520 423350 R identified by Glimmer3; putative; WcaG protein complement(422520..423350) Aggregatibacter aphrophilus NJ8700 8123121 YP_003006926.1 CDS NT05HA_0418 NC_012913.1 423415 424275 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(423415..424275) Aggregatibacter aphrophilus NJ8700 8123122 YP_003006927.1 CDS NT05HA_0419 NC_012913.1 424515 425528 R identified by Glimmer3; putative; OmpC protein complement(424515..425528) Aggregatibacter aphrophilus NJ8700 8123123 YP_003006928.1 CDS NT05HA_0420 NC_012913.1 426019 426147 R identified by Glimmer3; putative; hypothetical protein complement(426019..426147) Aggregatibacter aphrophilus NJ8700 8123124 YP_003006929.1 CDS prfC NC_012913.1 426260 427843 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 426260..427843 Aggregatibacter aphrophilus NJ8700 8123125 YP_003006930.1 CDS NT05HA_0422 NC_012913.1 427928 428824 R Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase complement(427928..428824) Aggregatibacter aphrophilus NJ8700 8123126 YP_003006931.1 CDS NT05HA_0423 NC_012913.1 428939 430036 R identified by Glimmer3; putative; PotD complement(428939..430036) Aggregatibacter aphrophilus NJ8700 8123127 YP_003006932.1 CDS potC NC_012913.1 430166 430939 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein complement(430166..430939) Aggregatibacter aphrophilus NJ8700 8123128 YP_003006933.1 CDS potB NC_012913.1 430939 431811 R can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein complement(430939..431811) Aggregatibacter aphrophilus NJ8700 8123129 YP_003006934.1 CDS potA NC_012913.1 431783 432985 R functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase protein complement(431783..432985) Aggregatibacter aphrophilus NJ8700 8123130 YP_003006935.1 CDS NT05HA_0427 NC_012913.1 433170 434420 D catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T 433170..434420 Aggregatibacter aphrophilus NJ8700 8123131 YP_003006936.1 CDS NT05HA_0428 NC_012913.1 434473 437127 R identified by Glimmer3; putative; mce related protein complement(434473..437127) Aggregatibacter aphrophilus NJ8700 8123132 YP_003006938.1 CDS NT05HA_0429 NC_012913.1 438272 438361 D identified by Glimmer3; putative; PqiA protein 438272..438361 Aggregatibacter aphrophilus NJ8700 8123133 YP_003006939.1 CDS NT05HA_0431 NC_012913.1 438443 439201 D affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector 438443..439201 Aggregatibacter aphrophilus NJ8700 8123134 YP_003006940.1 CDS NT05HA_0434 NC_012913.1 441410 442930 D identified by Glimmer3; putative; periplasmic protein 441410..442930 Aggregatibacter aphrophilus NJ8700 8123136 YP_003006941.1 CDS NT05HA_0435 NC_012913.1 443000 443560 D identified by Glimmer3; putative; twin-arginine translocation pathway signal 443000..443560 Aggregatibacter aphrophilus NJ8700 8123137 YP_003006942.1 CDS NT05HA_0436 NC_012913.1 443627 444265 D identified by Glimmer3; putative; carboxy- protease 443627..444265 Aggregatibacter aphrophilus NJ8700 8123138 YP_003006943.1 CDS sucA NC_012913.1 444511 447315 D SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component 444511..447315 Aggregatibacter aphrophilus NJ8700 8123139 YP_003006944.1 CDS NT05HA_0438 NC_012913.1 447447 448652 D identified by Glimmer3; putative; E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex; dihydrolipoyllysine-residue succinyltransferase 447447..448652 Aggregatibacter aphrophilus NJ8700 8123140 YP_003006945.1 CDS NT05HA_0439 NC_012913.1 448642 448782 D identified by Glimmer3; putative; hypothetical protein 448642..448782 Aggregatibacter aphrophilus NJ8700 8123141 YP_003006946.1 CDS sucC NC_012913.1 448839 450008 D catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta 448839..450008 Aggregatibacter aphrophilus NJ8700 8123142 YP_003006947.1 CDS NT05HA_0441 NC_012913.1 450019 450897 D identified by Glimmer3; putative; (Succinyl-CoA synthetase subunit alpha) (SCS-alpha); succinyl-CoA ligase [ADP-forming] subunit alpha 450019..450897 Aggregatibacter aphrophilus NJ8700 8121875 YP_003006949.1 CDS NT05HA_0445 NC_012913.1 456954 457586 R identified by Glimmer3; putative; DNA transformation protein TfoX complement(456954..457586) Aggregatibacter aphrophilus NJ8700 8121881 YP_003006950.1 CDS NT05HA_0446 NC_012913.1 457886 458803 R identified by Glimmer3; putative; formate dehydrogenase accessory protein FdhE complement(457886..458803) Aggregatibacter aphrophilus NJ8700 8121882 YP_003006951.1 CDS NT05HA_0449 NC_012913.1 460129 460545 D identified by Glimmer3; putative; protein YgiW 460129..460545 Aggregatibacter aphrophilus NJ8700 8121884 YP_003006952.1 CDS NT05HA_0450 NC_012913.1 460640 461311 D identified by Glimmer3; putative; transcriptional regulatory protein QseB 460640..461311 Aggregatibacter aphrophilus NJ8700 8121885 YP_003006953.1 CDS NT05HA_0451 NC_012913.1 461298 462665 D identified by Glimmer3; putative; sensor protein QseC 461298..462665 Aggregatibacter aphrophilus NJ8700 8121886 YP_003006954.1 CDS adk NC_012913.1 462812 463456 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(462812..463456) Aggregatibacter aphrophilus NJ8700 8121887 YP_003006955.1 CDS NT05HA_0453 NC_012913.1 463610 464884 R identified by Glimmer3; putative; AmpG protein complement(463610..464884) Aggregatibacter aphrophilus NJ8700 8121888 YP_003006956.1 CDS NT05HA_0454 NC_012913.1 464888 465229 R identified by Glimmer3; putative; hydrogenase nickel insertion protein HypA complement(464888..465229) Aggregatibacter aphrophilus NJ8700 8121889 YP_003006957.1 CDS NT05HA_0455 NC_012913.1 465235 466251 R identified by Glimmer3; putative; UDP-glucose 4-epimerase complement(465235..466251) Aggregatibacter aphrophilus NJ8700 8121890 YP_003006958.1 CDS NT05HA_0457 NC_012913.1 466314 466490 R identified by Glimmer3; putative; inner membrane protein YicO complement(466314..466490) Aggregatibacter aphrophilus NJ8700 8121891 YP_003006959.1 CDS NT05HA_0456 NC_012913.1 466489 467820 D identified by Glimmer3; putative; hypothetical protein 466489..467820 Aggregatibacter aphrophilus NJ8700 8121892 YP_003006960.1 CDS NT05HA_0458 NC_012913.1 467873 469183 R identified by Glimmer3; putative; (tRNA(Ile)-lysidinesynthetase) (tRNA(Ile)-2-lysyl-cytidine synthase); tRNA(Ile)-lysidine synthase complement(467873..469183) Aggregatibacter aphrophilus NJ8700 8121893 YP_003006961.1 CDS NT05HA_0459 NC_012913.1 469228 470085 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase complement(469228..470085) Aggregatibacter aphrophilus NJ8700 8121894 YP_003006962.1 CDS NT05HA_0460 NC_012913.1 470148 471101 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(470148..471101) Aggregatibacter aphrophilus NJ8700 8121895 YP_003006963.1 CDS NT05HA_0461 NC_012913.1 471669 472631 R identified by Glimmer3; putative; band 7 protein complement(471669..472631) Aggregatibacter aphrophilus NJ8700 8121896 YP_003006964.1 CDS NT05HA_0462 NC_012913.1 473026 473241 R identified by Glimmer3; putative; hypothetical protein complement(473026..473241) Aggregatibacter aphrophilus NJ8700 8121897 YP_003006965.1 CDS NT05HA_0463 NC_012913.1 473333 473476 D identified by Glimmer3; putative; hypothetical protein 473333..473476 Aggregatibacter aphrophilus NJ8700 8121898 YP_003006966.1 CDS NT05HA_0464 NC_012913.1 473724 473957 R identified by Glimmer3; putative; hypothetical protein complement(473724..473957) Aggregatibacter aphrophilus NJ8700 8121899 YP_003006967.1 CDS NT05HA_0465 NC_012913.1 473959 474300 R identified by Glimmer3; putative; hypothetical protein complement(473959..474300) Aggregatibacter aphrophilus NJ8700 8121900 YP_003006968.1 CDS NT05HA_0466 NC_012913.1 474358 475152 R identified by Glimmer3; putative; hypothetical protein complement(474358..475152) Aggregatibacter aphrophilus NJ8700 8121901 YP_003006969.1 CDS NT05HA_0467 NC_012913.1 475221 475580 R identified by Glimmer3; putative; hypothetical protein complement(475221..475580) Aggregatibacter aphrophilus NJ8700 8121902 YP_003006970.1 CDS NT05HA_0468 NC_012913.1 475660 475806 R identified by Glimmer3; putative; hypothetical protein complement(475660..475806) Aggregatibacter aphrophilus NJ8700 8121903 YP_003006971.1 CDS NT05HA_0469 NC_012913.1 476076 476687 R identified by Glimmer3; putative; hypothetical protein complement(476076..476687) Aggregatibacter aphrophilus NJ8700 8121904 YP_003006972.1 CDS NT05HA_0470 NC_012913.1 476684 477466 R identified by Glimmer3; putative; Bet complement(476684..477466) Aggregatibacter aphrophilus NJ8700 8121905 YP_003006973.1 CDS NT05HA_0471 NC_012913.1 477473 478435 R identified by Glimmer3; putative; hypothetical protein complement(477473..478435) Aggregatibacter aphrophilus NJ8700 8121906 YP_003006974.1 CDS NT05HA_0472 NC_012913.1 478438 478602 R identified by Glimmer3; putative; hypothetical protein complement(478438..478602) Aggregatibacter aphrophilus NJ8700 8121907 YP_003006975.1 CDS NT05HA_0473 NC_012913.1 478580 478861 R identified by Glimmer3; putative; lipoprotein complement(478580..478861) Aggregatibacter aphrophilus NJ8700 8121908 YP_003006976.1 CDS NT05HA_0474 NC_012913.1 479764 480231 D identified by Glimmer3; putative; hypothetical protein 479764..480231 Aggregatibacter aphrophilus NJ8700 8121909 YP_003006977.1 CDS NT05HA_0475 NC_012913.1 480325 480537 R identified by Glimmer3; putative; outer capsid spike VP4 protein complement(480325..480537) Aggregatibacter aphrophilus NJ8700 8121910 YP_003006978.1 CDS NT05HA_0476 NC_012913.1 480915 481334 R identified by Glimmer3; putative; hypothetical protein complement(480915..481334) Aggregatibacter aphrophilus NJ8700 8121911 YP_003006979.1 CDS NT05HA_0477 NC_012913.1 481324 481797 R identified by Glimmer3; putative; HicB protein complement(481324..481797) Aggregatibacter aphrophilus NJ8700 8121912 YP_003006980.1 CDS NT05HA_0478 NC_012913.1 482217 482912 R identified by Glimmer3; putative; HTH-type transcriptional regulator PrtR complement(482217..482912) Aggregatibacter aphrophilus NJ8700 8121913 YP_003006981.1 CDS NT05HA_0479 NC_012913.1 483031 483243 D identified by Glimmer3; putative; hypothetical protein 483031..483243 Aggregatibacter aphrophilus NJ8700 8121914 YP_003006982.1 CDS NT05HA_0480 NC_012913.1 483292 483735 D identified by Glimmer3; putative; hypothetical protein 483292..483735 Aggregatibacter aphrophilus NJ8700 8121915 YP_003006983.1 CDS NT05HA_0481 NC_012913.1 483787 484494 D identified by Glimmer3; putative; hypothetical protein 483787..484494 Aggregatibacter aphrophilus NJ8700 8121916 YP_003006984.1 CDS NT05HA_0482 NC_012913.1 484491 485216 D identified by Glimmer3; putative; hypothetical protein 484491..485216 Aggregatibacter aphrophilus NJ8700 8121917 YP_003006985.1 CDS NT05HA_0483 NC_012913.1 485213 485857 D identified by Glimmer3; putative; replication protein P 485213..485857 Aggregatibacter aphrophilus NJ8700 8121918 YP_003006986.1 CDS NT05HA_0484 NC_012913.1 485854 486372 D identified by Glimmer3; putative; DNA adenine methylase 485854..486372 Aggregatibacter aphrophilus NJ8700 8121919 YP_003006987.1 CDS NT05HA_0485 NC_012913.1 486342 486977 D identified by Glimmer3; putative; hypothetical protein 486342..486977 Aggregatibacter aphrophilus NJ8700 8121920 YP_003006988.1 CDS NT05HA_0486 NC_012913.1 487152 487328 D identified by Glimmer3; putative; Gp66 487152..487328 Aggregatibacter aphrophilus NJ8700 8121921 YP_003006989.1 CDS NT05HA_0487 NC_012913.1 487325 487687 D identified by Glimmer3; putative; bacteriophage V crossover junction endodeoxyribonuclease 487325..487687 Aggregatibacter aphrophilus NJ8700 8121922 YP_003006990.1 CDS NT05HA_0488 NC_012913.1 487680 488186 D identified by Glimmer3; putative; hypothetical protein 487680..488186 Aggregatibacter aphrophilus NJ8700 8121923 YP_003006991.1 CDS NT05HA_0489 NC_012913.1 488350 488565 D identified by Glimmer3; putative; hypothetical protein 488350..488565 Aggregatibacter aphrophilus NJ8700 8121924 YP_003006992.1 CDS NT05HA_0490 NC_012913.1 488577 489104 D identified by Glimmer3; putative; lysozyme 488577..489104 Aggregatibacter aphrophilus NJ8700 8121925 YP_003006993.1 CDS NT05HA_0491 NC_012913.1 489056 489226 D identified by Glimmer3; putative; putative lytic protein Rz 489056..489226 Aggregatibacter aphrophilus NJ8700 8121926 YP_003006994.1 CDS NT05HA_0492 NC_012913.1 489371 489583 D identified by Glimmer3; putative; putative lytic protein Rz1 489371..489583 Aggregatibacter aphrophilus NJ8700 8121927 YP_003006995.1 CDS NT05HA_0493 NC_012913.1 490044 490508 D identified by Glimmer3; putative; terminase small subunit 490044..490508 Aggregatibacter aphrophilus NJ8700 8121928 YP_003006996.1 CDS NT05HA_0494 NC_012913.1 490508 492019 D identified by Glimmer3; putative; phage terminase, large subunit 490508..492019 Aggregatibacter aphrophilus NJ8700 8121929 YP_003006997.1 CDS NT05HA_0495 NC_012913.1 492016 493254 D identified by Glimmer3; putative; phage portal protein, HK97 family 492016..493254 Aggregatibacter aphrophilus NJ8700 8121930 YP_003006998.1 CDS NT05HA_0496 NC_012913.1 493244 493903 D identified by Glimmer3; putative; prohead protease 493244..493903 Aggregatibacter aphrophilus NJ8700 8121931 YP_003006999.1 CDS NT05HA_0497 NC_012913.1 493905 495098 D identified by Glimmer3; putative; phage major capsid protein, HK97 family 493905..495098 Aggregatibacter aphrophilus NJ8700 8121932 YP_003007000.1 CDS NT05HA_0498 NC_012913.1 495420 495782 D identified by Glimmer3; putative; phage head-tail adaptor 495420..495782 Aggregatibacter aphrophilus NJ8700 8121933 YP_003007001.1 CDS NT05HA_0499 NC_012913.1 495775 496257 D identified by Glimmer3; putative; phage protein, HK97 gp10 family 495775..496257 Aggregatibacter aphrophilus NJ8700 8121934 YP_003007002.1 CDS NT05HA_0500 NC_012913.1 496259 496603 D identified by Glimmer3; putative; hypothetical protein 496259..496603 Aggregatibacter aphrophilus NJ8700 8121935 YP_003007003.1 CDS NT05HA_0501 NC_012913.1 496607 497263 D identified by Glimmer3; putative; hypothetical protein 496607..497263 Aggregatibacter aphrophilus NJ8700 8121936 YP_003007004.1 CDS NT05HA_0502 NC_012913.1 497325 497732 D identified by Glimmer3; putative; hypothetical protein 497325..497732 Aggregatibacter aphrophilus NJ8700 8121937 YP_003007005.1 CDS NT05HA_0503 NC_012913.1 497741 498001 D identified by Glimmer3; putative; hypothetical protein 497741..498001 Aggregatibacter aphrophilus NJ8700 8121938 YP_003007006.1 CDS NT05HA_0504 NC_012913.1 498054 498509 D identified by Glimmer3; putative; hypothetical protein 498054..498509 Aggregatibacter aphrophilus NJ8700 8121939 YP_003007007.1 CDS NT05HA_0505 NC_012913.1 498601 498792 D identified by Glimmer3; putative; hypothetical protein 498601..498792 Aggregatibacter aphrophilus NJ8700 8121940 YP_003007008.1 CDS NT05HA_0506 NC_012913.1 498851 502183 D identified by Glimmer3; putative; tape measure domain-containing protein 498851..502183 Aggregatibacter aphrophilus NJ8700 8121941 YP_003007009.1 CDS NT05HA_0507 NC_012913.1 502199 502534 D identified by Glimmer3; putative; phage minor tail protein 502199..502534 Aggregatibacter aphrophilus NJ8700 8121942 YP_003007010.1 CDS NT05HA_0508 NC_012913.1 502534 503268 D identified by Glimmer3; putative; phage minor tail protein L 502534..503268 Aggregatibacter aphrophilus NJ8700 8121943 YP_003007011.1 CDS NT05HA_0509 NC_012913.1 503271 504032 D identified by Glimmer3; putative; tail assembly protein 503271..504032 Aggregatibacter aphrophilus NJ8700 8121944 YP_003007012.1 CDS NT05HA_0510 NC_012913.1 504056 504577 D identified by Glimmer3; putative; putative phage tail assembly protein 504056..504577 Aggregatibacter aphrophilus NJ8700 8121945 YP_003007013.1 CDS NT05HA_0513 NC_012913.1 508808 509698 D identified by Glimmer3; putative; hypothetical protein 508808..509698 Aggregatibacter aphrophilus NJ8700 8121947 YP_003007014.1 CDS NT05HA_0514 NC_012913.1 509768 510061 D identified by Glimmer3; putative; hypothetical protein 509768..510061 Aggregatibacter aphrophilus NJ8700 8121948 YP_003007015.1 CDS NT05HA_0516 NC_012913.1 510414 511613 R identified by Glimmer3; putative; hypothetical protein complement(510414..511613) Aggregatibacter aphrophilus NJ8700 8121949 YP_003007016.1 CDS NT05HA_0515 NC_012913.1 511576 511713 D identified by Glimmer3; putative; integrase 511576..511713 Aggregatibacter aphrophilus NJ8700 8121950 YP_003007017.1 CDS guaA NC_012913.1 511819 513378 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(511819..513378) Aggregatibacter aphrophilus NJ8700 8121951 YP_003007018.1 CDS NT05HA_0518 NC_012913.1 513442 513597 D identified by Glimmer3; putative; DMT superfamily efflux pump 513442..513597 Aggregatibacter aphrophilus NJ8700 8121952 YP_003007019.1 CDS NT05HA_0519 NC_012913.1 513570 514439 R identified by Glimmer3; putative; hypothetical protein complement(513570..514439) Aggregatibacter aphrophilus NJ8700 8121953 YP_003007020.1 CDS dcuC NC_012913.1 514548 515906 R responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC complement(514548..515906) Aggregatibacter aphrophilus NJ8700 8121954 YP_003007021.1 CDS NT05HA_0521 NC_012913.1 516077 516907 R identified by Glimmer3; putative; xanthine/uracil permease family protein complement(516077..516907) Aggregatibacter aphrophilus NJ8700 8121555 YP_003007022.1 CDS NT05HA_0522 NC_012913.1 516946 517062 R identified by Glimmer3; putative; hypothetical protein complement(516946..517062) Aggregatibacter aphrophilus NJ8700 8121556 YP_003007023.1 CDS NT05HA_0523 NC_012913.1 517099 523296 R identified by Glimmer3; putative; autotransporter adhesin complement(517099..523296) Aggregatibacter aphrophilus NJ8700 8121557 YP_003007027.1 CDS NT05HA_0527 NC_012913.1 526373 526774 R identified by Glimmer3; putative; hemagglutinin family protein complement(526373..526774) Aggregatibacter aphrophilus NJ8700 8121558 YP_003007028.1 CDS NT05HA_0528 NC_012913.1 527930 529072 D identified by Glimmer3; putative; hypothetical protein 527930..529072 Aggregatibacter aphrophilus NJ8700 8121559 YP_003007029.1 CDS NT05HA_0529 NC_012913.1 529132 530598 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(529132..530598) Aggregatibacter aphrophilus NJ8700 8121560 YP_003007030.1 CDS NT05HA_0530 NC_012913.1 530758 531690 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 530758..531690 Aggregatibacter aphrophilus NJ8700 8121561 YP_003007031.1 CDS NT05HA_0531 NC_012913.1 531777 531980 D identified by Glimmer3; putative; 17 kDa surface antigen family protein 531777..531980 Aggregatibacter aphrophilus NJ8700 8121562 YP_003007032.1 CDS NT05HA_0532 NC_012913.1 532343 533146 D catalyzes the formation of 4-amino-2-methyl-5-diphosphomethylpyrimidine; phosphomethylpyrimidine kinase 532343..533146 Aggregatibacter aphrophilus NJ8700 8121563 YP_003007033.1 CDS NT05HA_0533 NC_012913.1 533188 534189 D identified by Glimmer3; putative; thiamin/thiamin pyrophospate-binding protein; thiamin/thiamin pyrophosphate ABC transporter 533188..534189 Aggregatibacter aphrophilus NJ8700 8121564 YP_003007034.1 CDS thiP NC_012913.1 534197 535825 D permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 534197..535825 Aggregatibacter aphrophilus NJ8700 8121565 YP_003007035.1 CDS NT05HA_0535 NC_012913.1 535809 536444 D identified by Glimmer3; putative; thiamine ABC transporter ATP-binding protein 535809..536444 Aggregatibacter aphrophilus NJ8700 8121566 YP_003007036.1 CDS NT05HA_0536 NC_012913.1 536502 537506 D identified by Glimmer3; putative; biotin synthase 536502..537506 Aggregatibacter aphrophilus NJ8700 8121567 YP_003007037.1 CDS NT05HA_0537 NC_012913.1 537572 539860 R identified by Glimmer3; putative; type III restriction enzyme, res subunit family complement(537572..539860) Aggregatibacter aphrophilus NJ8700 8121568 YP_003007038.1 CDS NT05HA_0538 NC_012913.1 539857 541347 R identified by Glimmer3; putative; similar to modification methylase KpnI (Adenine-specificmethyltransferase KpnI) (M.KpnI); modification methylase complement(539857..541347) Aggregatibacter aphrophilus NJ8700 8121569 YP_003007039.1 CDS NT05HA_0539 NC_012913.1 541223 541507 R identified by Glimmer3; putative; methyltransferase I restriction-modification system complement(541223..541507) Aggregatibacter aphrophilus NJ8700 8121570 YP_003007040.1 CDS NT05HA_0540 NC_012913.1 541664 543130 R identified by Glimmer3; putative; PTS system N-acetylglucosamine-specific transporter subunit IIBC complement(541664..543130) Aggregatibacter aphrophilus NJ8700 8121571 YP_003007041.1 CDS NT05HA_0541 NC_012913.1 543331 544464 R identified by Glimmer3; putative; N-acetylneuraminic acid mutarotase complement(543331..544464) Aggregatibacter aphrophilus NJ8700 8121572 YP_003007042.1 CDS NT05HA_0542 NC_012913.1 544508 544630 D identified by Glimmer3; putative; N-acetylneuraminic acid transporter 544508..544630 Aggregatibacter aphrophilus NJ8700 8121573 YP_003007043.1 CDS NT05HA_0543 NC_012913.1 544627 546477 R identified by Glimmer3; putative; hypothetical protein complement(544627..546477) Aggregatibacter aphrophilus NJ8700 8121574 YP_003007044.1 CDS NT05HA_0544 NC_012913.1 546548 547534 R identified by Glimmer3; putative; sialic acid-binding periplasmic protein SiaP complement(546548..547534) Aggregatibacter aphrophilus NJ8700 8121575 YP_003007045.1 CDS NT05HA_0545 NC_012913.1 547789 548493 D Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase 547789..548493 Aggregatibacter aphrophilus NJ8700 8121576 YP_003007046.1 CDS NT05HA_0546 NC_012913.1 548510 549394 D catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase 548510..549394 Aggregatibacter aphrophilus NJ8700 8121577 YP_003007047.1 CDS NT05HA_0547 NC_012913.1 549399 550268 D identified by Glimmer3; putative; N-acetylmannosamine kinase 549399..550268 Aggregatibacter aphrophilus NJ8700 8121578 YP_003007048.1 CDS NT05HA_0548 NC_012913.1 550287 551165 D catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase 550287..551165 Aggregatibacter aphrophilus NJ8700 8121579 YP_003007049.1 CDS nagB NC_012913.1 551365 552168 D catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase 551365..552168 Aggregatibacter aphrophilus NJ8700 8121580 YP_003007050.1 CDS nagA NC_012913.1 552223 553368 D catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase 552223..553368 Aggregatibacter aphrophilus NJ8700 8121581 YP_003007051.1 CDS NT05HA_0551 NC_012913.1 553425 553658 D identified by Glimmer3; putative; thiol peroxidase 553425..553658 Aggregatibacter aphrophilus NJ8700 8121582 YP_003007052.1 CDS tpx NC_012913.1 553655 554155 R antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase complement(553655..554155) Aggregatibacter aphrophilus NJ8700 8121583 YP_003007053.1 CDS hemH NC_012913.1 554195 555256 R protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase complement(554195..555256) Aggregatibacter aphrophilus NJ8700 8121584 YP_003007054.1 CDS NT05HA_0554 NC_012913.1 555249 555671 R identified by Glimmer3; putative; esterase YdiI complement(555249..555671) Aggregatibacter aphrophilus NJ8700 8121585 YP_003007055.1 CDS NT05HA_0555 NC_012913.1 555684 558770 R identified by Glimmer3; putative; FAD linked oxidase complement(555684..558770) Aggregatibacter aphrophilus NJ8700 8121586 YP_003007056.1 CDS NT05HA_0556 NC_012913.1 559228 560268 D identified by Glimmer3; putative; (Outer membrane protein 33K) (Outermembrane major heat-modifiable protein); outer membrane protein A 559228..560268 Aggregatibacter aphrophilus NJ8700 8121587 YP_003007057.1 CDS NT05HA_0557 NC_012913.1 560371 560952 D identified by Glimmer3; putative; LemA protein 560371..560952 Aggregatibacter aphrophilus NJ8700 8121588 YP_003007058.1 CDS NT05HA_0558 NC_012913.1 560974 561423 D identified by Glimmer3; putative; hypothetical protein 560974..561423 Aggregatibacter aphrophilus NJ8700 8121589 YP_003007059.1 CDS NT05HA_0559 NC_012913.1 561416 562204 D identified by Glimmer3; putative; methanol dehydrogenase-like protein 561416..562204 Aggregatibacter aphrophilus NJ8700 8121590 YP_003007060.1 CDS NT05HA_0560 NC_012913.1 562285 562614 D identified by Glimmer3; putative; putative glutaredoxin-like protein 562285..562614 Aggregatibacter aphrophilus NJ8700 8121591 YP_003007061.1 CDS NT05HA_0561 NC_012913.1 562688 563191 D identified by Glimmer3; putative; membrane protein YtwI 562688..563191 Aggregatibacter aphrophilus NJ8700 8121592 YP_003007062.1 CDS NT05HA_0562 NC_012913.1 563192 563575 D identified by Glimmer3; putative; membrane protein 563192..563575 Aggregatibacter aphrophilus NJ8700 8121593 YP_003007063.1 CDS NT05HA_0563 NC_012913.1 563578 567579 D involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA 563578..567579 Aggregatibacter aphrophilus NJ8700 8121594 YP_003007064.1 CDS NT05HA_0564 NC_012913.1 567937 568398 D identified by Glimmer3; putative; hypothetical protein 567937..568398 Aggregatibacter aphrophilus NJ8700 8121595 YP_003007065.1 CDS NT05HA_0565 NC_012913.1 568566 568733 R identified by Glimmer3; putative; cytochrome c-553 complement(568566..568733) Aggregatibacter aphrophilus NJ8700 8121596 YP_003007066.1 CDS NT05HA_0566 NC_012913.1 568889 569392 R identified by Glimmer3; putative; ResA complement(568889..569392) Aggregatibacter aphrophilus NJ8700 8121597 YP_003007067.1 CDS NT05HA_0567 NC_012913.1 569373 570056 R identified by Glimmer3; putative; macrolide export ATP-binding/permease MacB complement(569373..570056) Aggregatibacter aphrophilus NJ8700 8121598 YP_003007068.1 CDS NT05HA_0568 NC_012913.1 570058 571197 R identified by Glimmer3; putative; integral membrane protein-permease complement(570058..571197) Aggregatibacter aphrophilus NJ8700 8121599 YP_003007069.1 CDS NT05HA_0569 NC_012913.1 571184 572521 R identified by Glimmer3; putative; membrane protein complement(571184..572521) Aggregatibacter aphrophilus NJ8700 8121600 YP_003007070.1 CDS NT05HA_0570 NC_012913.1 572524 573942 R identified by Glimmer3; putative; integral membrane protein complement(572524..573942) Aggregatibacter aphrophilus NJ8700 8121601 YP_003007071.1 CDS NT05HA_0571 NC_012913.1 574126 574647 R identified by Glimmer3; putative; periplasmic protein complement(574126..574647) Aggregatibacter aphrophilus NJ8700 8121602 YP_003007072.1 CDS NT05HA_0572 NC_012913.1 574690 576597 R identified by Glimmer3; putative; high-affinity Fe2+/Pb2+ permease complement(574690..576597) Aggregatibacter aphrophilus NJ8700 8121603 YP_003007073.1 CDS NT05HA_0573 NC_012913.1 576798 577505 R identified by Glimmer3; putative; YvbY complement(576798..577505) Aggregatibacter aphrophilus NJ8700 8121604 YP_003007074.1 CDS NT05HA_0576 NC_012913.1 578919 579650 R identified by Glimmer3; putative; glycolate oxidase complement(578919..579650) Aggregatibacter aphrophilus NJ8700 8121606 YP_003007075.1 CDS NT05HA_0577 NC_012913.1 579792 581390 R identified by Glimmer3; putative; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(579792..581390) Aggregatibacter aphrophilus NJ8700 8121607 YP_003007076.1 CDS NT05HA_0578 NC_012913.1 581553 581705 D identified by Glimmer3; putative; hypothetical protein 581553..581705 Aggregatibacter aphrophilus NJ8700 8121608 YP_003007077.1 CDS NT05HA_0579 NC_012913.1 581820 584213 R identified by Glimmer3; putative; penicillin-binding protein 1B complement(581820..584213) Aggregatibacter aphrophilus NJ8700 8121609 YP_003007078.1 CDS NT05HA_0580 NC_012913.1 584248 584610 R orf1; identified by Glimmer3; putative; protein in HemN 3'region complement(584248..584610) Aggregatibacter aphrophilus NJ8700 8121610 YP_003007079.1 CDS NT05HA_0581 NC_012913.1 584612 584953 R essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA complement(584612..584953) Aggregatibacter aphrophilus NJ8700 8121611 YP_003007080.1 CDS NT05HA_0582 NC_012913.1 585088 585891 D catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase 585088..585891 Aggregatibacter aphrophilus NJ8700 8121612 YP_003007081.1 CDS glnD NC_012913.1 585958 588558 D identified by Glimmer3; putative; PII uridylyl-transferase 585958..588558 Aggregatibacter aphrophilus NJ8700 8121613 YP_003007082.1 CDS NT05HA_0584 NC_012913.1 588629 589912 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(588629..589912) Aggregatibacter aphrophilus NJ8700 8121614 YP_003007083.1 CDS NT05HA_0585 NC_012913.1 590041 591114 D identified by Glimmer3; putative; UDP-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase 590041..591114 Aggregatibacter aphrophilus NJ8700 8121615 YP_003007085.1 CDS NT05HA_0592 NC_012913.1 597347 597799 R identified by Glimmer3; putative; protein YhbP complement(597347..597799) Aggregatibacter aphrophilus NJ8700 8121624 YP_003007086.1 CDS NT05HA_0593 NC_012913.1 597885 598697 R identified by Glimmer3; putative; peptide transport system ATP-binding protein SapF complement(597885..598697) Aggregatibacter aphrophilus NJ8700 8121625 YP_003007087.1 CDS NT05HA_0594 NC_012913.1 598710 599762 R identified by Glimmer3; putative; peptide transport system ATP-binding protein SapD complement(598710..599762) Aggregatibacter aphrophilus NJ8700 8121626 YP_003007088.1 CDS NT05HA_0595 NC_012913.1 599769 600656 R identified by Glimmer3; putative; dipeptide transport system permease DppC complement(599769..600656) Aggregatibacter aphrophilus NJ8700 8121627 YP_003007089.1 CDS NT05HA_0596 NC_012913.1 600646 601614 R identified by Glimmer3; putative; peptide transport system permease SapB complement(600646..601614) Aggregatibacter aphrophilus NJ8700 8121628 YP_003007090.1 CDS NT05HA_0599 NC_012913.1 603435 603566 R identified by Glimmer3; putative; LysR family transcriptional regulator complement(603435..603566) Aggregatibacter aphrophilus NJ8700 8121630 YP_003007091.1 CDS NT05HA_0600 NC_012913.1 603590 604186 D identified by Glimmer3; putative; ABC transporter ATP-binding protein 603590..604186 Aggregatibacter aphrophilus NJ8700 8121631 YP_003007092.1 CDS NT05HA_0601 NC_012913.1 604180 604905 D identified by Glimmer3; putative; molybdenum ABC transporter substrate-binding protein 604180..604905 Aggregatibacter aphrophilus NJ8700 8121632 YP_003007093.1 CDS NT05HA_0602 NC_012913.1 605099 606505 D identified by Glimmer3; putative; hypothetical protein 605099..606505 Aggregatibacter aphrophilus NJ8700 8121633 YP_003007094.1 CDS NT05HA_0603 NC_012913.1 606521 607615 D identified by Glimmer3; putative; hypothetical protein 606521..607615 Aggregatibacter aphrophilus NJ8700 8121634 YP_003007095.1 CDS NT05HA_0604 NC_012913.1 607712 608671 D identified by Glimmer3; putative; GTP-binding proten HflX 607712..608671 Aggregatibacter aphrophilus NJ8700 8121715 YP_003007096.1 CDS NT05HA_0605 NC_012913.1 608668 609939 R identified by Glimmer3; putative; transcriptional regulatory protein TyrR complement(608668..609939) Aggregatibacter aphrophilus NJ8700 8121716 YP_003007097.1 CDS NT05HA_0606 NC_012913.1 609911 610051 R identified by Glimmer3; putative; hypothetical protein complement(609911..610051) Aggregatibacter aphrophilus NJ8700 8121717 YP_003007098.1 CDS NT05HA_0607 NC_012913.1 610066 610368 R identified by Glimmer3; putative; (HF-I) (HF-1) (Yersinia multipleregulator) (Yersinia regulator for pleiotropic phenotype); Host factor-I protein complement(610066..610368) Aggregatibacter aphrophilus NJ8700 8121718 YP_003007099.1 CDS miaA NC_012913.1 610493 611449 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(610493..611449) Aggregatibacter aphrophilus NJ8700 8121719 YP_003007100.1 CDS mutL NC_012913.1 611452 613299 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(611452..613299) Aggregatibacter aphrophilus NJ8700 8121720 YP_003007101.1 CDS NT05HA_0610 NC_012913.1 613299 614756 R identified by Glimmer3; putative; N-acetylmuramoyl-L-alanine amidase complement(613299..614756) Aggregatibacter aphrophilus NJ8700 8121721 YP_003007102.1 CDS NT05HA_0611 NC_012913.1 614803 615237 R identified by Glimmer3; putative; hypothetical protein complement(614803..615237) Aggregatibacter aphrophilus NJ8700 8121722 YP_003007103.1 CDS NT05HA_0612 NC_012913.1 615259 615372 D identified by Glimmer3; putative; hypothetical protein 615259..615372 Aggregatibacter aphrophilus NJ8700 8121723 YP_003007104.1 CDS NT05HA_0613 NC_012913.1 615509 616408 R identified by Glimmer3; putative; Dca complement(615509..616408) Aggregatibacter aphrophilus NJ8700 8121724 YP_003007105.1 CDS NT05HA_0615 NC_012913.1 617555 618100 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(617555..618100) Aggregatibacter aphrophilus NJ8700 8121726 YP_003007106.1 CDS NT05HA_0616 NC_012913.1 618172 619212 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 618172..619212 Aggregatibacter aphrophilus NJ8700 8121727 YP_003007107.1 CDS NT05HA_0617 NC_012913.1 619440 619697 D identified by Glimmer3; putative; phosphocarrier protein HPr 619440..619697 Aggregatibacter aphrophilus NJ8700 8121728 YP_003007108.1 CDS NT05HA_0618 NC_012913.1 619838 621565 D Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase 619838..621565 Aggregatibacter aphrophilus NJ8700 8121729 YP_003007109.1 CDS NT05HA_0619 NC_012913.1 621626 622126 D functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit 621626..622126 Aggregatibacter aphrophilus NJ8700 8121730 YP_003007110.1 CDS NT05HA_0620 NC_012913.1 622265 624304 R identified by Glimmer3; putative; oligopeptidase A complement(622265..624304) Aggregatibacter aphrophilus NJ8700 8121731 YP_003007111.1 CDS NT05HA_0621 NC_012913.1 624437 624802 D identified by Glimmer3; putative; hypothetical protein 624437..624802 Aggregatibacter aphrophilus NJ8700 8121732 YP_003007112.1 CDS NT05HA_0622 NC_012913.1 624995 626410 D identified by Glimmer3; putative; periplasmic oligopeptide-binding protein 624995..626410 Aggregatibacter aphrophilus NJ8700 8121733 YP_003007113.1 CDS NT05HA_0623 NC_012913.1 626449 627246 R identified by Glimmer3; putative; hypothetical protein complement(626449..627246) Aggregatibacter aphrophilus NJ8700 8121734 YP_003007114.1 CDS NT05HA_0624 NC_012913.1 627803 627970 R identified by Glimmer3; putative; hypothetical protein complement(627803..627970) Aggregatibacter aphrophilus NJ8700 8121735 YP_003007115.1 CDS ribA NC_012913.1 628363 629016 R catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II complement(628363..629016) Aggregatibacter aphrophilus NJ8700 8121736 YP_003007116.1 CDS NT05HA_0626 NC_012913.1 629216 629875 D identified by Glimmer3; putative; phosphatidylglycerophosphatase B 629216..629875 Aggregatibacter aphrophilus NJ8700 8121737 YP_003007117.1 CDS NT05HA_0627 NC_012913.1 629888 630802 D catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase 629888..630802 Aggregatibacter aphrophilus NJ8700 8121738 YP_003007118.1 CDS NT05HA_0628 NC_012913.1 630921 631724 D identified by Glimmer3; putative; amylovoran biosynthesis glycosyltransferase AmsE 630921..631724 Aggregatibacter aphrophilus NJ8700 8121739 YP_003007119.1 CDS NT05HA_0629 NC_012913.1 631729 632856 D identified by Glimmer3; putative; lytic transglycosylase 631729..632856 Aggregatibacter aphrophilus NJ8700 8121740 YP_003007120.1 CDS NT05HA_0630 NC_012913.1 632965 633753 D identified by Glimmer3; putative; ABC transporter permease 632965..633753 Aggregatibacter aphrophilus NJ8700 8121741 YP_003007121.1 CDS NT05HA_0631 NC_012913.1 633750 634493 D identified by Glimmer3; putative; (Teichoicacid-transporting ATPase); teichoic acids export ATP-binding protein TagH 633750..634493 Aggregatibacter aphrophilus NJ8700 8121742 YP_003007122.1 CDS NT05HA_0632 NC_012913.1 634490 634846 D identified by Glimmer3; putative; bactoprenol-linked glucose translocase 634490..634846 Aggregatibacter aphrophilus NJ8700 8121743 YP_003007123.1 CDS NT05HA_0633 NC_012913.1 635773 636894 D identified by Glimmer3; putative; hypothetical protein 635773..636894 Aggregatibacter aphrophilus NJ8700 8121744 YP_003007124.1 CDS NT05HA_0634 NC_012913.1 636990 637631 D identified by Glimmer3; putative; hypothetical protein 636990..637631 Aggregatibacter aphrophilus NJ8700 8121745 YP_003007125.1 CDS NT05HA_0635 NC_012913.1 637875 639623 D identified by Glimmer3; putative; putative glycosyltransferase 637875..639623 Aggregatibacter aphrophilus NJ8700 8121746 YP_003007126.1 CDS NT05HA_0636 NC_012913.1 639643 640794 D identified by Glimmer3; putative; UDP-galactopyranose mutase 639643..640794 Aggregatibacter aphrophilus NJ8700 8121747 YP_003007127.1 CDS NT05HA_0637 NC_012913.1 640794 641717 D identified by Glimmer3; putative; glycosyl transferase, family 2 640794..641717 Aggregatibacter aphrophilus NJ8700 8121748 YP_003007128.1 CDS NT05HA_0638 NC_012913.1 641723 642457 D identified by Glimmer3; putative; EpsF 641723..642457 Aggregatibacter aphrophilus NJ8700 8121749 YP_003007129.1 CDS NT05HA_0639 NC_012913.1 642494 643906 D identified by Glimmer3; putative; UDP-phosphate galactose phosphotransferase 642494..643906 Aggregatibacter aphrophilus NJ8700 8121750 YP_003007130.1 CDS NT05HA_0640 NC_012913.1 644021 644824 D removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III 644021..644824 Aggregatibacter aphrophilus NJ8700 8121751 YP_003007131.1 CDS NT05HA_0641 NC_012913.1 644824 645615 D identified by Glimmer3; putative; hypothetical protein 644824..645615 Aggregatibacter aphrophilus NJ8700 8121752 YP_003007132.1 CDS NT05HA_0642 NC_012913.1 645637 646686 D identified by Glimmer3; putative; dTDP-glucose 4,6-dehydratase 645637..646686 Aggregatibacter aphrophilus NJ8700 8121753 YP_003007133.1 CDS NT05HA_0643 NC_012913.1 646820 647716 D identified by Glimmer3; putative; hypothetical protein 646820..647716 Aggregatibacter aphrophilus NJ8700 8121754 YP_003007134.1 CDS NT05HA_0644 NC_012913.1 647726 647839 R identified by Glimmer3; putative; hypothetical protein complement(647726..647839) Aggregatibacter aphrophilus NJ8700 8121755 YP_003007135.1 CDS NT05HA_0645 NC_012913.1 647868 648422 R identified by Glimmer3; putative; NfnB protein complement(647868..648422) Aggregatibacter aphrophilus NJ8700 8121756 YP_003007136.1 CDS NT05HA_0646 NC_012913.1 648564 650450 D identified by Glimmer3; putative; signal peptide peptidase SppA, 67K type 648564..650450 Aggregatibacter aphrophilus NJ8700 8121757 YP_003007137.1 CDS tyrA NC_012913.1 650493 651617 D catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 650493..651617 Aggregatibacter aphrophilus NJ8700 8121758 YP_003007138.1 CDS NT05HA_0648 NC_012913.1 651696 652319 D identified by Glimmer3; putative; Sua5/YciO/YrdC/YwlC family protein 651696..652319 Aggregatibacter aphrophilus NJ8700 8121759 YP_003007139.1 CDS NT05HA_0649 NC_012913.1 652358 652537 D identified by Glimmer3; putative; hypothetical protein 652358..652537 Aggregatibacter aphrophilus NJ8700 8121760 YP_003007140.1 CDS NT05HA_0650 NC_012913.1 652572 653336 D identified by Glimmer3; putative; hypothetical protein 652572..653336 Aggregatibacter aphrophilus NJ8700 8121761 YP_003007141.1 CDS cysB NC_012913.1 653361 654332 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 653361..654332 Aggregatibacter aphrophilus NJ8700 8121762 YP_003007142.1 CDS NT05HA_0654 NC_012913.1 655511 655924 R identified by Glimmer3; putative; hydroxyisourate hydrolase complement(655511..655924) Aggregatibacter aphrophilus NJ8700 8121764 YP_003007143.1 CDS NT05HA_0655 NC_012913.1 656327 657184 R with TehA confers resistance to tellurite; tellurite resistance protein TehB complement(656327..657184) Aggregatibacter aphrophilus NJ8700 8121765 YP_003007144.1 CDS aceE NC_012913.1 657588 660245 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 657588..660245 Aggregatibacter aphrophilus NJ8700 8121766 YP_003007145.1 CDS aceF NC_012913.1 660333 662213 D E2 component of pyruvate dehydrogenase multienzyme complex; in Escherichia coli AceF contains three N-terminal lipoyl domains; dihydrolipoamide acetyltransferase 660333..662213 Aggregatibacter aphrophilus NJ8700 8121767 YP_003007146.1 CDS NT05HA_0658 NC_012913.1 662304 663728 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 662304..663728 Aggregatibacter aphrophilus NJ8700 8121768 YP_003007147.1 CDS NT05HA_0659 NC_012913.1 663825 664106 D identified by Glimmer3; putative; hypothetical protein 663825..664106 Aggregatibacter aphrophilus NJ8700 8121769 YP_003007148.1 CDS NT05HA_0660 NC_012913.1 664214 664810 R identified by Glimmer3; putative; hypothetical protein complement(664214..664810) Aggregatibacter aphrophilus NJ8700 8121770 YP_003007149.1 CDS NT05HA_0661 NC_012913.1 664813 665790 R catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I complement(664813..665790) Aggregatibacter aphrophilus NJ8700 8121771 YP_003007150.1 CDS NT05HA_0662 NC_012913.1 665890 666456 D catalyzes the formation of anthranilate from chorismate and glutamine; functions in tryptophan biosynthesis; putative anthranilate synthase component II 665890..666456 Aggregatibacter aphrophilus NJ8700 8121772 YP_003007151.1 CDS NT05HA_0663 NC_012913.1 666611 667555 D Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 666611..667555 Aggregatibacter aphrophilus NJ8700 8121773 YP_003007152.1 CDS NT05HA_0664 NC_012913.1 667642 669588 D identified by Glimmer3; putative; CirA protein 667642..669588 Aggregatibacter aphrophilus NJ8700 8121774 YP_003007153.1 CDS NT05HA_0665 NC_012913.1 669603 670460 D identified by Glimmer3; putative; hypothetical protein 669603..670460 Aggregatibacter aphrophilus NJ8700 8121775 YP_003007154.1 CDS NT05HA_0666 NC_012913.1 670561 671043 D identified by Glimmer3; putative; transposase 670561..671043 Aggregatibacter aphrophilus NJ8700 8121776 YP_003007155.1 CDS NT05HA_0667 NC_012913.1 671116 672093 D identified by Glimmer3; putative; BtuC protein 671116..672093 Aggregatibacter aphrophilus NJ8700 8121777 YP_003007156.1 CDS NT05HA_0668 NC_012913.1 672098 672847 D identified by Glimmer3; putative; hemin import ATP-binding protein HmuV 672098..672847 Aggregatibacter aphrophilus NJ8700 8121778 YP_003007157.1 CDS NT05HA_0669 NC_012913.1 673076 673309 R identified by Glimmer3; putative; hypothetical protein complement(673076..673309) Aggregatibacter aphrophilus NJ8700 8121779 YP_003007158.1 CDS NT05HA_0670 NC_012913.1 674260 675072 D identified by Glimmer3; putative; hypothetical protein 674260..675072 Aggregatibacter aphrophilus NJ8700 8121780 YP_003007159.1 CDS NT05HA_0671 NC_012913.1 675150 675275 D identified by Glimmer3; putative; hypothetical protein 675150..675275 Aggregatibacter aphrophilus NJ8700 8121781 YP_003007160.1 CDS NT05HA_0672 NC_012913.1 675437 675913 R identified by Glimmer3; putative; hypothetical protein complement(675437..675913) Aggregatibacter aphrophilus NJ8700 8121782 YP_003007161.1 CDS NT05HA_0673 NC_012913.1 676095 677009 R identified by Glimmer3; putative; putative lysogenic conversion protein complement(676095..677009) Aggregatibacter aphrophilus NJ8700 8121783 YP_003007162.1 CDS metH NC_012913.1 677058 680747 R one of two methionine synthases in Escherichia coli; MetH catalyzes a methyl transfer reaction from methyltetrahydrofolate to homocysteine to create methionine; requires zinc for activity; B12-dependent methionine synthase complement(677058..680747) Aggregatibacter aphrophilus NJ8700 8121784 YP_003007163.1 CDS NT05HA_0675 NC_012913.1 680972 682156 D identified by Glimmer3; putative; lipoprotein releasing system, transmembrane protein LolC 680972..682156 Aggregatibacter aphrophilus NJ8700 8121785 YP_003007164.1 CDS NT05HA_0676 NC_012913.1 682149 682856 D identified by Glimmer3; putative; lipoprotein releasing system, ATP-binding protein 682149..682856 Aggregatibacter aphrophilus NJ8700 8121786 YP_003007165.1 CDS NT05HA_0677 NC_012913.1 682856 684106 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 682856..684106 Aggregatibacter aphrophilus NJ8700 8121787 YP_003007166.1 CDS NT05HA_0680 NC_012913.1 685460 686860 D identified by Glimmer3; putative; replicative DNA helicase 685460..686860 Aggregatibacter aphrophilus NJ8700 8121789 YP_003007167.1 CDS alr NC_012913.1 686887 687969 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 686887..687969 Aggregatibacter aphrophilus NJ8700 8121790 YP_003007168.1 CDS pgi NC_012913.1 687999 689648 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 687999..689648 Aggregatibacter aphrophilus NJ8700 8121791 YP_003007169.1 CDS ribH NC_012913.1 689868 690341 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 689868..690341 Aggregatibacter aphrophilus NJ8700 8121792 YP_003007170.1 CDS nusB NC_012913.1 690348 690773 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 690348..690773 Aggregatibacter aphrophilus NJ8700 8121793 YP_003007171.1 CDS NT05HA_0685 NC_012913.1 690792 691787 D identified by Glimmer3; putative; thiamine-monophosphate kinase 690792..691787 Aggregatibacter aphrophilus NJ8700 8121794 YP_003007172.1 CDS NT05HA_0686 NC_012913.1 691796 692287 D identified by Glimmer3; putative; phosphatidylglycerophosphatase A 691796..692287 Aggregatibacter aphrophilus NJ8700 8121155 YP_003007173.1 CDS NT05HA_0687 NC_012913.1 692296 692919 D identified by Glimmer3; putative; threonine efflux protein 692296..692919 Aggregatibacter aphrophilus NJ8700 8121156 YP_003007174.1 CDS NT05HA_0688 NC_012913.1 692938 693750 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 692938..693750 Aggregatibacter aphrophilus NJ8700 8121157 YP_003007175.1 CDS NT05HA_0689 NC_012913.1 693848 694096 R identified by Glimmer3; putative; Fdx protein complement(693848..694096) Aggregatibacter aphrophilus NJ8700 8121158 YP_003007176.1 CDS NT05HA_0690 NC_012913.1 694166 695551 R identified by Glimmer3; putative; CitT protein complement(694166..695551) Aggregatibacter aphrophilus NJ8700 8121159 YP_003007177.1 CDS nrdB NC_012913.1 695742 696872 R B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta complement(695742..696872) Aggregatibacter aphrophilus NJ8700 8121160 YP_003007178.1 CDS NT05HA_0692 NC_012913.1 696929 697048 D identified by Glimmer3; putative; hypothetical protein 696929..697048 Aggregatibacter aphrophilus NJ8700 8121161 YP_003007179.1 CDS NT05HA_0693 NC_012913.1 697404 699674 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(697404..699674) Aggregatibacter aphrophilus NJ8700 8121162 YP_003007180.1 CDS NT05HA_0694 NC_012913.1 699769 699924 R identified by Glimmer3; putative; hypothetical protein complement(699769..699924) Aggregatibacter aphrophilus NJ8700 8121163 YP_003007181.1 CDS NT05HA_0695 NC_012913.1 700208 701236 D identified by Glimmer3; putative; Fe3+ ABC transporter iron-binding protein 700208..701236 Aggregatibacter aphrophilus NJ8700 8121164 YP_003007182.1 CDS NT05HA_0696 NC_012913.1 701400 703424 D identified by Glimmer3; putative; ferric transport system permease 701400..703424 Aggregatibacter aphrophilus NJ8700 8121165 YP_003007183.1 CDS NT05HA_0697 NC_012913.1 703477 704463 D identified by Glimmer3; putative; Fe(3+) ions import ATP-binding protein FbpC 703477..704463 Aggregatibacter aphrophilus NJ8700 8121166 YP_003007184.1 CDS NT05HA_0698 NC_012913.1 704538 704777 R identified by Glimmer3; putative; protein EbsC complement(704538..704777) Aggregatibacter aphrophilus NJ8700 8121167 YP_003007185.1 CDS NT05HA_0701 NC_012913.1 706108 706737 D identified by Glimmer3; putative; bicyclomycin/multidrug efflux system 706108..706737 Aggregatibacter aphrophilus NJ8700 8121169 YP_003007186.1 CDS NT05HA_0702 NC_012913.1 706809 707291 R identified by Glimmer3; putative; phosphoribosylformylglycinamidine synthase complement(706809..707291) Aggregatibacter aphrophilus NJ8700 8121170 YP_003007187.1 CDS NT05HA_0703 NC_012913.1 707307 707948 R identified by Glimmer3; putative; cytochrome c-type biogenesis protein CcdA complement(707307..707948) Aggregatibacter aphrophilus NJ8700 8121171 YP_003007188.1 CDS NT05HA_0704 NC_012913.1 707952 709022 R identified by Glimmer3; putative; peptide methionine sulfoxide reductase MsrA/msrB complement(707952..709022) Aggregatibacter aphrophilus NJ8700 8121172 YP_003007189.1 CDS NT05HA_0705 NC_012913.1 709240 709932 D identified by Glimmer3; putative; carbonate dehydratase 709240..709932 Aggregatibacter aphrophilus NJ8700 8121173 YP_003007190.1 CDS NT05HA_0706 NC_012913.1 710103 710690 R identified by Glimmer3; putative; hypothetical protein complement(710103..710690) Aggregatibacter aphrophilus NJ8700 8121174 YP_003007191.1 CDS NT05HA_0707 NC_012913.1 710756 711340 R identified by Glimmer3; putative; phosphoheptose isomerase complement(710756..711340) Aggregatibacter aphrophilus NJ8700 8121175 YP_003007192.1 CDS NT05HA_0708 NC_012913.1 711346 711705 R identified by Glimmer3; putative; hypothetical protein complement(711346..711705) Aggregatibacter aphrophilus NJ8700 8121176 YP_003007193.1 CDS NT05HA_0709 NC_012913.1 711715 713430 R identified by Glimmer3; putative; LppC complement(711715..713430) Aggregatibacter aphrophilus NJ8700 8121177 YP_003007194.1 CDS NT05HA_0710 NC_012913.1 713507 714349 D identified by Glimmer3; putative; hypothetical protein 713507..714349 Aggregatibacter aphrophilus NJ8700 8121178 YP_003007195.1 CDS glpK NC_012913.1 714486 715985 R Converts glycerol and ADP to glycerol-3-phosphate and ADP; glycerol kinase complement(714486..715985) Aggregatibacter aphrophilus NJ8700 8121179 YP_003007196.1 CDS NT05HA_0712 NC_012913.1 716012 716806 R identified by Glimmer3; putative; glycerol uptake facilitator protein complement(716012..716806) Aggregatibacter aphrophilus NJ8700 8121180 YP_003007197.1 CDS NT05HA_0713 NC_012913.1 717170 718762 D identified by Glimmer3; putative; glycerol-3-phosphate dehydrogenase 717170..718762 Aggregatibacter aphrophilus NJ8700 8121181 YP_003007198.1 CDS NT05HA_0714 NC_012913.1 718863 719453 R identified by Glimmer3; putative; (fmn-dependent nadh-azocompound oxidoreductase) (azo-dye reductase); fmn-dependent NADH-azoreductase complement(718863..719453) Aggregatibacter aphrophilus NJ8700 8121182 YP_003007199.1 CDS NT05HA_0715 NC_012913.1 719686 720747 D SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 719686..720747 Aggregatibacter aphrophilus NJ8700 8121183 YP_003007200.1 CDS NT05HA_0716 NC_012913.1 720978 721814 D identified by Glimmer3; putative; Plp4 720978..721814 Aggregatibacter aphrophilus NJ8700 8121184 YP_003007201.1 CDS NT05HA_0717 NC_012913.1 721872 722747 R identified by Glimmer3; putative; fructosamine kinase complement(721872..722747) Aggregatibacter aphrophilus NJ8700 8121185 YP_003007202.1 CDS NT05HA_0718 NC_012913.1 722841 722969 R identified by Glimmer3; putative; hypothetical protein complement(722841..722969) Aggregatibacter aphrophilus NJ8700 8121186 YP_003007203.1 CDS NT05HA_0719 NC_012913.1 722986 724917 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 722986..724917 Aggregatibacter aphrophilus NJ8700 8121187 YP_003007204.1 CDS NT05HA_0722 NC_012913.1 726168 726647 D identified by Glimmer3; putative; translation initiation factor IF-3 726168..726647 Aggregatibacter aphrophilus NJ8700 8121189 YP_003007205.1 CDS rpmI NC_012913.1 726826 727023 D identified by Glimmer3; putative; 50S ribosomal protein L35 726826..727023 Aggregatibacter aphrophilus NJ8700 8121190 YP_003007206.1 CDS rplT NC_012913.1 727079 727432 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 727079..727432 Aggregatibacter aphrophilus NJ8700 8121191 YP_003007207.1 CDS NT05HA_0726 NC_012913.1 727555 727668 R identified by Glimmer3; putative; NADH:ubiquinone oxidoreductase, na complement(727555..727668) Aggregatibacter aphrophilus NJ8700 8121192 YP_003007208.1 CDS NT05HA_0725 NC_012913.1 727667 728146 D identified by Glimmer3; putative; hypothetical protein 727667..728146 Aggregatibacter aphrophilus NJ8700 8121193 YP_003007209.1 CDS NT05HA_0727 NC_012913.1 728608 730467 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(728608..730467) Aggregatibacter aphrophilus NJ8700 8121194 YP_003007210.1 CDS NT05HA_0728 NC_012913.1 730559 731449 R identified by Glimmer3; putative; geranyltranstransferase complement(730559..731449) Aggregatibacter aphrophilus NJ8700 8121195 YP_003007211.1 CDS NT05HA_0729 NC_012913.1 731460 731705 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(731460..731705) Aggregatibacter aphrophilus NJ8700 8121196 YP_003007212.1 CDS NT05HA_0730 NC_012913.1 731843 732037 R identified by Glimmer3; putative; hypothetical protein complement(731843..732037) Aggregatibacter aphrophilus NJ8700 8121197 YP_003007213.1 CDS NT05HA_0731 NC_012913.1 732141 732794 R identified by Glimmer3; putative; IroE protein complement(732141..732794) Aggregatibacter aphrophilus NJ8700 8121198 YP_003007214.1 CDS NT05HA_0732 NC_012913.1 732989 733885 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 732989..733885 Aggregatibacter aphrophilus NJ8700 8121199 YP_003007215.1 CDS NT05HA_0733 NC_012913.1 733906 735252 D identified by Glimmer3; putative; FolC bifunctional protein 733906..735252 Aggregatibacter aphrophilus NJ8700 8121200 YP_003007216.1 CDS NT05HA_0734 NC_012913.1 735316 735957 R identified by Glimmer3; putative; phosphoglycerate mutase family protein complement(735316..735957) Aggregatibacter aphrophilus NJ8700 8121201 YP_003007217.1 CDS cls NC_012913.1 736024 737481 R catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase complement(736024..737481) Aggregatibacter aphrophilus NJ8700 8121202 YP_003007218.1 CDS NT05HA_0736 NC_012913.1 737497 738405 R identified by Glimmer3; putative; membrane protein complement(737497..738405) Aggregatibacter aphrophilus NJ8700 8121203 YP_003007219.1 CDS NT05HA_0737 NC_012913.1 738539 739255 D identified by Glimmer3; putative; pseudouridine synthase Rlu family protein 738539..739255 Aggregatibacter aphrophilus NJ8700 8121204 YP_003007220.1 CDS NT05HA_0738 NC_012913.1 739265 740128 D identified by Glimmer3; putative; UAA transporter family 739265..740128 Aggregatibacter aphrophilus NJ8700 8121205 YP_003007221.1 CDS NT05HA_0739 NC_012913.1 740222 740545 D identified by Glimmer3; putative; alkylphosphonate utilization operon protein PhnA 740222..740545 Aggregatibacter aphrophilus NJ8700 8121206 YP_003007222.1 CDS NT05HA_0740 NC_012913.1 740651 741379 D identified by Glimmer3; putative; hypothetical protein 740651..741379 Aggregatibacter aphrophilus NJ8700 8121207 YP_003007223.1 CDS NT05HA_0741 NC_012913.1 741492 743033 D identified by Glimmer3; putative; alpha/beta superfamily hydrolase 741492..743033 Aggregatibacter aphrophilus NJ8700 8121208 YP_003007224.1 CDS NT05HA_0744 NC_012913.1 744653 746470 R identified by Glimmer3; putative; macrolide export ATP-binding/permease MacB complement(744653..746470) Aggregatibacter aphrophilus NJ8700 8121210 YP_003007225.1 CDS NT05HA_0745 NC_012913.1 746602 747786 R identified by Glimmer3; putative; MacA complement(746602..747786) Aggregatibacter aphrophilus NJ8700 8121211 YP_003007226.1 CDS NT05HA_0746 NC_012913.1 748062 749741 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 748062..749741 Aggregatibacter aphrophilus NJ8700 8121212 YP_003007227.1 CDS NT05HA_0747 NC_012913.1 749776 750255 D identified by Glimmer3; putative; hypothetical protein 749776..750255 Aggregatibacter aphrophilus NJ8700 8121213 YP_003007228.1 CDS NT05HA_0750 NC_012913.1 752458 754650 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 752458..754650 Aggregatibacter aphrophilus NJ8700 8121215 YP_003007229.1 CDS NT05HA_0751 NC_012913.1 754738 756798 D identified by Glimmer3; putative; glycogen debranching enzyme GlgX 754738..756798 Aggregatibacter aphrophilus NJ8700 8121216 YP_003007230.1 CDS glgC NC_012913.1 756826 758136 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 756826..758136 Aggregatibacter aphrophilus NJ8700 8121217 YP_003007231.1 CDS glgA NC_012913.1 758438 759877 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 758438..759877 Aggregatibacter aphrophilus NJ8700 8121218 YP_003007232.1 CDS NT05HA_0754 NC_012913.1 760000 762465 D identified by Glimmer3; putative; glycogen phosphorylase 760000..762465 Aggregatibacter aphrophilus NJ8700 8121219 YP_003007233.1 CDS NT05HA_0755 NC_012913.1 762584 763585 D identified by Glimmer3; putative; hypothetical protein 762584..763585 Aggregatibacter aphrophilus NJ8700 8121220 YP_003007234.1 CDS NT05HA_0756 NC_012913.1 763655 764260 R identified by Glimmer3; putative; cobalt transport protein CbiM complement(763655..764260) Aggregatibacter aphrophilus NJ8700 8121221 YP_003007235.1 CDS NT05HA_0757 NC_012913.1 764475 764762 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 764475..764762 Aggregatibacter aphrophilus NJ8700 8121222 YP_003007236.1 CDS NT05HA_0758 NC_012913.1 764908 765507 D identified by Glimmer3; putative; lipoprotein HlpB 764908..765507 Aggregatibacter aphrophilus NJ8700 8121223 YP_003007237.1 CDS NT05HA_0759 NC_012913.1 765594 766502 D identified by Glimmer3; putative; DacC protein 765594..766502 Aggregatibacter aphrophilus NJ8700 8121224 YP_003007238.1 CDS NT05HA_0760 NC_012913.1 766748 768070 D acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 766748..768070 Aggregatibacter aphrophilus NJ8700 8121225 YP_003007239.1 CDS NT05HA_0761 NC_012913.1 768098 768409 D identified by Glimmer3; putative; hypothetical protein 768098..768409 Aggregatibacter aphrophilus NJ8700 8121226 YP_003007240.1 CDS NT05HA_0762 NC_012913.1 768420 771881 D identified by Glimmer3; putative; 2-acyl-glycerophospho-ethanolamine acyltransferase 768420..771881 Aggregatibacter aphrophilus NJ8700 8121227 YP_003007241.1 CDS NT05HA_0763 NC_012913.1 771902 772648 D acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 771902..772648 Aggregatibacter aphrophilus NJ8700 8121228 YP_003007242.1 CDS mukB NC_012913.1 772641 777134 D SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 772641..777134 Aggregatibacter aphrophilus NJ8700 8121229 YP_003007243.1 CDS NT05HA_0765 NC_012913.1 777211 778083 D identified by Glimmer3; putative; cell division protein MukB 777211..778083 Aggregatibacter aphrophilus NJ8700 8121230 YP_003007244.1 CDS sbcB NC_012913.1 778129 779523 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 778129..779523 Aggregatibacter aphrophilus NJ8700 8121231 YP_003007245.1 CDS NT05HA_0767 NC_012913.1 780571 781056 D identified by Glimmer3; putative; nonheme iron-containing ferritin 780571..781056 Aggregatibacter aphrophilus NJ8700 8121232 YP_003007246.1 CDS NT05HA_0768 NC_012913.1 781075 781575 D identified by Glimmer3; putative; nonheme iron-containing ferritin 781075..781575 Aggregatibacter aphrophilus NJ8700 8121233 YP_003007247.1 CDS NT05HA_0769 NC_012913.1 781638 781793 R identified by Glimmer3; putative; hypothetical protein complement(781638..781793) Aggregatibacter aphrophilus NJ8700 8121234 YP_003007248.1 CDS NT05HA_0770 NC_012913.1 781906 782679 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 781906..782679 Aggregatibacter aphrophilus NJ8700 8123411 YP_003007249.1 CDS NT05HA_0771 NC_012913.1 782800 783732 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 782800..783732 Aggregatibacter aphrophilus NJ8700 8123412 YP_003007250.1 CDS NT05HA_0772 NC_012913.1 783860 784696 D identified by Glimmer3; putative; universal stress protein UspE 783860..784696 Aggregatibacter aphrophilus NJ8700 8123413 YP_003007251.1 CDS NT05HA_0773 NC_012913.1 784786 787392 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(784786..787392) Aggregatibacter aphrophilus NJ8700 8123414 YP_003007252.1 CDS NT05HA_0774 NC_012913.1 787491 788399 D identified by Glimmer3; putative; LysR family transcriptional regulator 787491..788399 Aggregatibacter aphrophilus NJ8700 8123415 YP_003007253.1 CDS NT05HA_0775 NC_012913.1 788446 789273 R identified by Glimmer3; putative; fumarate hydratase complement(788446..789273) Aggregatibacter aphrophilus NJ8700 8123416 YP_003007254.1 CDS NT05HA_0776 NC_012913.1 789270 789389 R identified by Glimmer3; putative; hypothetical protein complement(789270..789389) Aggregatibacter aphrophilus NJ8700 8123417 YP_003007255.1 CDS NT05HA_0777 NC_012913.1 789467 789901 R identified by Glimmer3; putative; peptidase E complement(789467..789901) Aggregatibacter aphrophilus NJ8700 8123418 YP_003007256.1 CDS NT05HA_0778 NC_012913.1 789914 790933 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(789914..790933) Aggregatibacter aphrophilus NJ8700 8123419 YP_003007257.1 CDS pepN NC_012913.1 791008 793617 R identified by Glimmer3; putative; aminopeptidase N complement(791008..793617) Aggregatibacter aphrophilus NJ8700 8123420 YP_003007258.1 CDS NT05HA_0780 NC_012913.1 793771 794268 D identified by Glimmer3; putative; phosphoribosylaminoimidazole carboxylase, catalytic subunit 793771..794268 Aggregatibacter aphrophilus NJ8700 8123421 YP_003007259.1 CDS NT05HA_0781 NC_012913.1 794446 795534 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 794446..795534 Aggregatibacter aphrophilus NJ8700 8123422 YP_003007260.1 CDS NT05HA_0782 NC_012913.1 795627 796817 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 795627..796817 Aggregatibacter aphrophilus NJ8700 8123423 YP_003007261.1 CDS NT05HA_0783 NC_012913.1 797048 798034 D identified by Glimmer3; putative; HmuU protein 797048..798034 Aggregatibacter aphrophilus NJ8700 8123424 YP_003007262.1 CDS NT05HA_0784 NC_012913.1 798044 798832 D identified by Glimmer3; putative; hypothetical protein 798044..798832 Aggregatibacter aphrophilus NJ8700 8123425 YP_003007263.1 CDS NT05HA_0785 NC_012913.1 798845 799960 D identified by Glimmer3; putative; iron chelatin ABC transporter substrate binding protein 798845..799960 Aggregatibacter aphrophilus NJ8700 8123426 YP_003007264.1 CDS NT05HA_0786 NC_012913.1 800050 800259 D identified by Glimmer3; putative; hypothetical protein 800050..800259 Aggregatibacter aphrophilus NJ8700 8123427 YP_003007265.1 CDS NT05HA_0787 NC_012913.1 800272 800391 R identified by Glimmer3; putative; hypothetical protein complement(800272..800391) Aggregatibacter aphrophilus NJ8700 8123428 YP_003007266.1 CDS NT05HA_0788 NC_012913.1 800363 800920 R identified by Glimmer3; putative; AcrR protein complement(800363..800920) Aggregatibacter aphrophilus NJ8700 8123429 YP_003007267.1 CDS NT05HA_0789 NC_012913.1 801068 802048 D identified by Glimmer3; putative; AcrA protein 801068..802048 Aggregatibacter aphrophilus NJ8700 8123430 YP_003007268.1 CDS NT05HA_0792 NC_012913.1 804797 805924 D identified by Glimmer3; putative; ABC transporter 804797..805924 Aggregatibacter aphrophilus NJ8700 8123432 YP_003007269.1 CDS NT05HA_0793 NC_012913.1 805939 807351 D identified by Glimmer3; putative; TolC protein 805939..807351 Aggregatibacter aphrophilus NJ8700 8123433 YP_003007270.1 CDS NT05HA_0794 NC_012913.1 807417 808508 R identified by Glimmer3; putative; (Outer membrane protein 33K) (Outermembrane major heat-modifiable protein); outer membrane protein A complement(807417..808508) Aggregatibacter aphrophilus NJ8700 8123434 YP_003007271.1 CDS NT05HA_0795 NC_012913.1 808837 809253 R identified by Glimmer3; putative; DoxX family protein complement(808837..809253) Aggregatibacter aphrophilus NJ8700 8123435 YP_003007272.1 CDS NT05HA_0796 NC_012913.1 809394 810362 D identified by Glimmer3; putative; threonyl-tRNA synthetase 809394..810362 Aggregatibacter aphrophilus NJ8700 8123436 YP_003007273.1 CDS NT05HA_0797 NC_012913.1 810465 810833 R ORF-17; identified by Glimmer3; putative; NlpC complement(810465..810833) Aggregatibacter aphrophilus NJ8700 8123437 YP_003007274.1 CDS ihfA NC_012913.1 811012 811308 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(811012..811308) Aggregatibacter aphrophilus NJ8700 8123438 YP_003007275.1 CDS pheT NC_012913.1 811312 813702 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(811312..813702) Aggregatibacter aphrophilus NJ8700 8123439 YP_003007276.1 CDS pheS NC_012913.1 813722 814711 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(813722..814711) Aggregatibacter aphrophilus NJ8700 8123440 YP_003007277.1 CDS NT05HA_0801 NC_012913.1 814966 815832 R putative metalloprotease; heat shock protein HtpX complement(814966..815832) Aggregatibacter aphrophilus NJ8700 8123441 YP_003007278.1 CDS NT05HA_0802 NC_012913.1 815922 816038 R identified by Glimmer3; putative; hypothetical protein complement(815922..816038) Aggregatibacter aphrophilus NJ8700 8123442 YP_003007279.1 CDS NT05HA_0803 NC_012913.1 816316 816477 R identified by Glimmer3; putative; hypothetical protein complement(816316..816477) Aggregatibacter aphrophilus NJ8700 8123443 YP_003007280.1 CDS NT05HA_0804 NC_012913.1 816599 817381 D identified by Glimmer3; putative; hypothetical protein 816599..817381 Aggregatibacter aphrophilus NJ8700 8123444 YP_003007281.1 CDS NT05HA_0805 NC_012913.1 817424 818398 D identified by Glimmer3; putative; arabinose 5-phosphate isomerase 817424..818398 Aggregatibacter aphrophilus NJ8700 8123445 YP_003007282.1 CDS NT05HA_0806 NC_012913.1 818398 818952 D identified by Glimmer3; putative; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 818398..818952 Aggregatibacter aphrophilus NJ8700 8123446 YP_003007283.1 CDS NT05HA_0807 NC_012913.1 819555 821102 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 819555..821102 Aggregatibacter aphrophilus NJ8700 8123447 YP_003007284.1 CDS NT05HA_0808 NC_012913.1 821113 821697 D identified by Glimmer3; putative; anthranilate synthase component II 821113..821697 Aggregatibacter aphrophilus NJ8700 8123448 YP_003007285.1 CDS NT05HA_0809 NC_012913.1 821754 822146 D identified by Glimmer3; putative; hypothetical protein 821754..822146 Aggregatibacter aphrophilus NJ8700 8123449 YP_003007286.1 CDS NT05HA_0810 NC_012913.1 822158 823159 D identified by Glimmer3; putative; anthranilate phosphoribosyltransferase 822158..823159 Aggregatibacter aphrophilus NJ8700 8123450 YP_003007287.1 CDS NT05HA_0811 NC_012913.1 823194 824624 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 823194..824624 Aggregatibacter aphrophilus NJ8700 8123451 YP_003007288.1 CDS NT05HA_0812 NC_012913.1 825013 826179 D involved in hydrogen uptake; hydrogenase 2 small subunit 825013..826179 Aggregatibacter aphrophilus NJ8700 8123452 YP_003007289.1 CDS NT05HA_0813 NC_012913.1 826172 827212 D Fe-S ferrodoxin type component; participates in the periplasmic electron-transferring activity of hydrogenase 2; hydrogenase 2 protein HybA 826172..827212 Aggregatibacter aphrophilus NJ8700 8123453 YP_003007290.1 CDS NT05HA_0814 NC_012913.1 827205 828431 D HybB; cytochrome b subunit of the hydrogenase 2 enzyme, composed of HybA, B, C, and O subunits; putative hydrogenase 2 b cytochrome subunit 827205..828431 Aggregatibacter aphrophilus NJ8700 8123454 YP_003007291.1 CDS NT05HA_0815 NC_012913.1 828431 830140 D involved in hydrogen uptake; hydrogenase 2 large subunit 828431..830140 Aggregatibacter aphrophilus NJ8700 8123455 YP_003007292.1 CDS hybD NC_012913.1 830140 830619 D protease responsible for the cleavage of a 15 amino acid peptide from the C-terminal end of the large subunit of hydrogenase 2 (HybC); hydrogenase 2 maturation endopeptidase 830140..830619 Aggregatibacter aphrophilus NJ8700 8123456 YP_003007293.1 CDS NT05HA_0817 NC_012913.1 830825 831349 D identified by Glimmer3; putative; hydrogenase 2-specific chaperone 830825..831349 Aggregatibacter aphrophilus NJ8700 8123457 YP_003007294.1 CDS NT05HA_0818 NC_012913.1 831379 831654 D identified by Glimmer3; putative; hydrogenase 2 accessory protein HypG 831379..831654 Aggregatibacter aphrophilus NJ8700 8123458 YP_003007295.1 CDS NT05HA_0819 NC_012913.1 831763 832671 D identified by Glimmer3; putative; hypothetical protein 831763..832671 Aggregatibacter aphrophilus NJ8700 8123459 YP_003007296.1 CDS NT05HA_0820 NC_012913.1 832857 833003 D identified by Glimmer3; putative; hypothetical protein 832857..833003 Aggregatibacter aphrophilus NJ8700 8123460 YP_003007297.1 CDS NT05HA_0821 NC_012913.1 833038 833307 D catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 833038..833307 Aggregatibacter aphrophilus NJ8700 8123461 YP_003007298.1 CDS NT05HA_0822 NC_012913.1 833323 835119 D catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 833323..835119 Aggregatibacter aphrophilus NJ8700 8123462 YP_003007299.1 CDS NT05HA_0823 NC_012913.1 835130 836440 D identified by Glimmer3; putative; oxaloacetate decarboxylase beta chain 835130..836440 Aggregatibacter aphrophilus NJ8700 8123463 YP_003007300.1 CDS NT05HA_0824 NC_012913.1 836782 837534 D identified by Glimmer3; putative; NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg 836782..837534 Aggregatibacter aphrophilus NJ8700 8123464 YP_003007301.1 CDS NT05HA_0825 NC_012913.1 837556 838755 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 837556..838755 Aggregatibacter aphrophilus NJ8700 8123465 YP_003007302.1 CDS trpA NC_012913.1 838752 839558 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 838752..839558 Aggregatibacter aphrophilus NJ8700 8123466 YP_003007303.1 CDS NT05HA_0827 NC_012913.1 839774 841462 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 839774..841462 Aggregatibacter aphrophilus NJ8700 8123467 YP_003007304.1 CDS NT05HA_0828 NC_012913.1 841597 842586 D identified by Glimmer3; putative; ribonucleoside-diphosphate reductase subunit beta 841597..842586 Aggregatibacter aphrophilus NJ8700 8123468 YP_003007305.1 CDS NT05HA_0829 NC_012913.1 842770 844272 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 842770..844272 Aggregatibacter aphrophilus NJ8700 8123469 YP_003007306.1 CDS NT05HA_0830 NC_012913.1 844363 844671 R identified by Glimmer3; putative; autoinducer-2 (AI-2) modifying protein LsrG complement(844363..844671) Aggregatibacter aphrophilus NJ8700 8123470 YP_003007307.1 CDS NT05HA_0831 NC_012913.1 844746 845624 R identified by Glimmer3; putative; aldolase complement(844746..845624) Aggregatibacter aphrophilus NJ8700 8123471 YP_003007308.1 CDS NT05HA_0832 NC_012913.1 845640 846656 R identified by Glimmer3; putative; hypothetical protein complement(845640..846656) Aggregatibacter aphrophilus NJ8700 8123472 YP_003007309.1 CDS NT05HA_0833 NC_012913.1 846690 847694 R identified by Glimmer3; putative; sugar ABC transporter permease complement(846690..847694) Aggregatibacter aphrophilus NJ8700 8123473 YP_003007310.1 CDS NT05HA_0834 NC_012913.1 847708 848736 R identified by Glimmer3; putative; inner membrane ABC transporter permease YdeY complement(847708..848736) Aggregatibacter aphrophilus NJ8700 8123474 YP_003007311.1 CDS NT05HA_0835 NC_012913.1 848747 850264 R identified by Glimmer3; putative; ribose import ATP-binding protein RbsA complement(848747..850264) Aggregatibacter aphrophilus NJ8700 8123475 YP_003007312.1 CDS NT05HA_0836 NC_012913.1 850514 851479 D identified by Glimmer3; putative; transcriptional regulator YdeW 850514..851479 Aggregatibacter aphrophilus NJ8700 8123476 YP_003007313.1 CDS bioD NC_012913.1 853216 853944 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(853216..853944) Aggregatibacter aphrophilus NJ8700 8123478 YP_003007314.1 CDS asnC NC_012913.1 855445 856848 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 855445..856848 Aggregatibacter aphrophilus NJ8700 8123480 YP_003007315.1 CDS NT05HA_0843 NC_012913.1 857015 857458 R identified by Glimmer3; putative; ClpXP protease specificity-enhancing factor complement(857015..857458) Aggregatibacter aphrophilus NJ8700 8123481 YP_003007316.1 CDS NT05HA_0844 NC_012913.1 857470 858111 R identified by Glimmer3; putative; Gst protein complement(857470..858111) Aggregatibacter aphrophilus NJ8700 8123482 YP_003007317.1 CDS NT05HA_0845 NC_012913.1 858317 858772 R identified by Glimmer3; putative; molybdopterin converting factor subunit 2 complement(858317..858772) Aggregatibacter aphrophilus NJ8700 8123483 YP_003007318.1 CDS NT05HA_0846 NC_012913.1 858773 859018 R identified by Glimmer3; putative; molybdopterin converting factor subunit 1 complement(858773..859018) Aggregatibacter aphrophilus NJ8700 8123484 YP_003007319.1 CDS NT05HA_0847 NC_012913.1 859012 859500 R identified by Glimmer3; putative; molybdenum cofactor biosynthesis protein C complement(859012..859500) Aggregatibacter aphrophilus NJ8700 8123485 YP_003007320.1 CDS moaA NC_012913.1 859555 860568 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(859555..860568) Aggregatibacter aphrophilus NJ8700 8123486 YP_003007321.1 CDS NT05HA_0849 NC_012913.1 860928 861902 D identified by Glimmer3; putative; similar to y3024; hypothetical protein 860928..861902 Aggregatibacter aphrophilus NJ8700 8123487 YP_003007322.1 CDS NT05HA_0850 NC_012913.1 862040 862744 D alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 862040..862744 Aggregatibacter aphrophilus NJ8700 8123488 YP_003007323.1 CDS torD NC_012913.1 862825 863448 R TorD; involved in the biogenesis of torA; acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor; chaperone protein TorD complement(862825..863448) Aggregatibacter aphrophilus NJ8700 8123489 YP_003007324.1 CDS NT05HA_0852 NC_012913.1 863399 865858 R identified by Glimmer3; putative; trimethylamine-N-oxide reductase TorA complement(863399..865858) Aggregatibacter aphrophilus NJ8700 8123490 YP_003007325.1 CDS NT05HA_0853 NC_012913.1 865870 867045 R identified by Glimmer3; putative; trimethylamine-N-oxide reductase c-type cytochrome TorC complement(865870..867045) Aggregatibacter aphrophilus NJ8700 8122826 YP_003007326.1 CDS NT05HA_0854 NC_012913.1 867061 867210 R identified by Glimmer3; putative; hypothetical protein complement(867061..867210) Aggregatibacter aphrophilus NJ8700 8122827 YP_003007327.1 CDS NT05HA_0855 NC_012913.1 867468 868916 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(867468..868916) Aggregatibacter aphrophilus NJ8700 8122828 YP_003007328.1 CDS NT05HA_0856 NC_012913.1 869237 870334 D identified by Glimmer3; putative; cytochrome c-type protein TorY 869237..870334 Aggregatibacter aphrophilus NJ8700 8122829 YP_003007329.1 CDS NT05HA_0857 NC_012913.1 870385 872865 D identified by Glimmer3; putative; trimethylamiNe-n-oxide reductase 2 870385..872865 Aggregatibacter aphrophilus NJ8700 8122830 YP_003007330.1 CDS NT05HA_0858 NC_012913.1 872940 873716 R identified by Glimmer3; putative; MmcQ protein complement(872940..873716) Aggregatibacter aphrophilus NJ8700 8122831 YP_003007331.1 CDS NT05HA_0859 NC_012913.1 873735 873851 D identified by Glimmer3; putative; hypothetical protein 873735..873851 Aggregatibacter aphrophilus NJ8700 8122832 YP_003007332.1 CDS NT05HA_0860 NC_012913.1 873918 875543 R identified by Glimmer3; putative; trehalose-6-phosphate hydrolase complement(873918..875543) Aggregatibacter aphrophilus NJ8700 8122833 YP_003007333.1 CDS NT05HA_0861 NC_012913.1 875677 877095 R phosphoenolpyruvate-dependent sugar phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIB is phosphorylated by IIA and then transfers the phosphoryl group to the sugar; IIC forms the translocation channel; PTS system trehalose(maltose)-specific transporter subunits IIBC complement(875677..877095) Aggregatibacter aphrophilus NJ8700 8122834 YP_003007334.1 CDS NT05HA_0862 NC_012913.1 877257 878042 R identified by Glimmer3; putative; tRNA pseudouridine synthase A complement(877257..878042) Aggregatibacter aphrophilus NJ8700 8122835 YP_003007335.1 CDS rpsI NC_012913.1 878194 878586 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(878194..878586) Aggregatibacter aphrophilus NJ8700 8122836 YP_003007336.1 CDS rplM NC_012913.1 878604 879032 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(878604..879032) Aggregatibacter aphrophilus NJ8700 8122837 YP_003007337.1 CDS NT05HA_0865 NC_012913.1 879276 879872 R identified by Glimmer3; putative; tellurite resistance protein TehB complement(879276..879872) Aggregatibacter aphrophilus NJ8700 8122838 YP_003007338.1 CDS NT05HA_0866 NC_012913.1 879885 881864 R identified by Glimmer3; putative; exodeoxyribonuclease V subunit alpha complement(879885..881864) Aggregatibacter aphrophilus NJ8700 8122839 YP_003007339.1 CDS NT05HA_0867 NC_012913.1 881864 885526 R identified by Glimmer3; putative; exodeoxyribonuclease V subunit beta complement(881864..885526) Aggregatibacter aphrophilus NJ8700 8122840 YP_003007340.1 CDS NT05HA_0868 NC_012913.1 885590 885946 R identified by Glimmer3; putative; DsrE protein complement(885590..885946) Aggregatibacter aphrophilus NJ8700 8122841 YP_003007341.1 CDS NT05HA_0869 NC_012913.1 885952 887262 R identified by Glimmer3; putative; inner membrane protein YicO complement(885952..887262) Aggregatibacter aphrophilus NJ8700 8122842 YP_003007342.1 CDS NT05HA_0871 NC_012913.1 887681 888211 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase complement(887681..888211) Aggregatibacter aphrophilus NJ8700 8122844 YP_003007343.1 CDS NT05HA_0872 NC_012913.1 888353 890128 R identified by Glimmer3; putative; Putative protease La-like protein complement(888353..890128) Aggregatibacter aphrophilus NJ8700 8122845 YP_003007344.1 CDS NT05HA_0873 NC_012913.1 890264 890710 D identified by Glimmer3; putative; simlar to y2737; hypothetical protein 890264..890710 Aggregatibacter aphrophilus NJ8700 8122846 YP_003007345.1 CDS NT05HA_0874 NC_012913.1 890776 890985 R identified by Glimmer3; putative; cold shock domain-containing protein CspD complement(890776..890985) Aggregatibacter aphrophilus NJ8700 8122847 YP_003007346.1 CDS NT05HA_0875 NC_012913.1 891195 891356 R identified by Glimmer3; putative; hypothetical protein complement(891195..891356) Aggregatibacter aphrophilus NJ8700 8122848 YP_003007347.1 CDS NT05HA_0876 NC_012913.1 891411 892121 R catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C complement(891411..892121) Aggregatibacter aphrophilus NJ8700 8122849 YP_003007348.1 CDS NT05HA_0877 NC_012913.1 892115 892432 R hypothetical protein complement(892115..892432) Aggregatibacter aphrophilus NJ8700 8122850 YP_003007349.1 CDS NT05HA_0878 NC_012913.1 892540 893322 D identified by Glimmer3; putative; Zn-ribbon-containing protein 892540..893322 Aggregatibacter aphrophilus NJ8700 8122851 YP_003007350.1 CDS queF NC_012913.1 893331 894170 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 893331..894170 Aggregatibacter aphrophilus NJ8700 8122852 YP_003007351.1 CDS NT05HA_0880 NC_012913.1 894231 894773 R identified by Glimmer3; putative; transporting ATPase complement(894231..894773) Aggregatibacter aphrophilus NJ8700 8122853 YP_003007352.1 CDS NT05HA_0881 NC_012913.1 894862 896811 R identified by Glimmer3; putative; ATP-dependent metallopeptidase HflB complement(894862..896811) Aggregatibacter aphrophilus NJ8700 8122854 YP_003007353.1 CDS NT05HA_0882 NC_012913.1 896916 897545 R identified by Glimmer3; putative; ribosomal RNA large subunit methyltransferase J complement(896916..897545) Aggregatibacter aphrophilus NJ8700 8122855 YP_003007354.1 CDS purU NC_012913.1 897705 898541 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(897705..898541) Aggregatibacter aphrophilus NJ8700 8122856 YP_003007355.1 CDS NT05HA_0884 NC_012913.1 898612 899010 R identified by Glimmer3; putative; H-NS histone family complement(898612..899010) Aggregatibacter aphrophilus NJ8700 8122857 YP_003007356.1 CDS NT05HA_0885 NC_012913.1 899450 900979 D identified by Glimmer3; putative; Na+/H+ antiporter family 899450..900979 Aggregatibacter aphrophilus NJ8700 8122858 YP_003007357.1 CDS NT05HA_0895 NC_012913.1 904292 904447 R identified by Glimmer3; putative; hypothetical protein complement(904292..904447) Aggregatibacter aphrophilus NJ8700 8122861 YP_003007358.1 CDS NT05HA_0896 NC_012913.1 904619 905230 R identified by Glimmer3; putative; hypothetical protein complement(904619..905230) Aggregatibacter aphrophilus NJ8700 8122862 YP_003007359.1 CDS NT05HA_0897 NC_012913.1 905712 906704 D binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR 905712..906704 Aggregatibacter aphrophilus NJ8700 8122863 YP_003007360.1 CDS NT05HA_0898 NC_012913.1 906682 907395 R identified by Glimmer3; putative; PurR protein complement(906682..907395) Aggregatibacter aphrophilus NJ8700 8122864 YP_003007361.1 CDS metX NC_012913.1 907653 908678 D Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase 907653..908678 Aggregatibacter aphrophilus NJ8700 8122865 YP_003007362.1 CDS NT05HA_0900 NC_012913.1 908690 908851 D identified by Glimmer3; putative; hypothetical protein 908690..908851 Aggregatibacter aphrophilus NJ8700 8122866 YP_003007363.1 CDS NT05HA_0901 NC_012913.1 909006 910031 D binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR 909006..910031 Aggregatibacter aphrophilus NJ8700 8122867 YP_003007364.1 CDS NT05HA_0902 NC_012913.1 910287 912926 D catalyzes the formation of oxaloacetate from phosphoenolpyruvate; phosphoenolpyruvate carboxylase 910287..912926 Aggregatibacter aphrophilus NJ8700 8122868 YP_003007365.1 CDS NT05HA_0903 NC_012913.1 913029 913349 D highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; dsDNA-mimic protein 913029..913349 Aggregatibacter aphrophilus NJ8700 8122869 YP_003007366.1 CDS NT05HA_0904 NC_012913.1 913460 915205 R identified by Glimmer3; putative; ABC transporter ATP-binding protein/permease complement(913460..915205) Aggregatibacter aphrophilus NJ8700 8122870 YP_003007367.1 CDS NT05HA_0905 NC_012913.1 915261 917492 R identified by Glimmer3; putative; TonB-dependent siderophore receptor complement(915261..917492) Aggregatibacter aphrophilus NJ8700 8122871 YP_003007368.1 CDS NT05HA_0906 NC_012913.1 917653 919050 R NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein complement(917653..919050) Aggregatibacter aphrophilus NJ8700 8122872 YP_003007369.1 CDS NT05HA_0907 NC_012913.1 919075 919689 D catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha 919075..919689 Aggregatibacter aphrophilus NJ8700 8122873 YP_003007370.1 CDS NT05HA_0908 NC_012913.1 919790 920092 D identified by Glimmer3; putative; hypothetical protein 919790..920092 Aggregatibacter aphrophilus NJ8700 8122874 YP_003007371.1 CDS NT05HA_0909 NC_012913.1 920157 920633 R identified by Glimmer3; putative; transcription elongation factor GreA complement(920157..920633) Aggregatibacter aphrophilus NJ8700 8122875 YP_003007372.1 CDS NT05HA_0910 NC_012913.1 920786 922228 D penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase/endopeptidase 920786..922228 Aggregatibacter aphrophilus NJ8700 8122876 YP_003007373.1 CDS folE NC_012913.1 922324 922980 R involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I complement(922324..922980) Aggregatibacter aphrophilus NJ8700 8122877 YP_003007374.1 CDS NT05HA_0912 NC_012913.1 923124 924338 D identified by Glimmer3; putative; molybdopterin biosynthesis MoeA protein 923124..924338 Aggregatibacter aphrophilus NJ8700 8122878 YP_003007375.1 CDS NT05HA_0913 NC_012913.1 924354 925085 D ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB 924354..925085 Aggregatibacter aphrophilus NJ8700 8122879 YP_003007376.1 CDS NT05HA_0914 NC_012913.1 925335 926228 R identified by Glimmer3; putative; maltose regulon periplasmic protein complement(925335..926228) Aggregatibacter aphrophilus NJ8700 8122880 YP_003007377.1 CDS lamB NC_012913.1 926319 927602 R porin involved in the transport of maltose and maltodextrins; maltoporin complement(926319..927602) Aggregatibacter aphrophilus NJ8700 8122881 YP_003007378.1 CDS NT05HA_0916 NC_012913.1 927637 928947 R identified by Glimmer3; putative; alpha amylase catalytic subunit complement(927637..928947) Aggregatibacter aphrophilus NJ8700 8122882 YP_003007379.1 CDS NT05HA_0917 NC_012913.1 928958 930076 R with malEFG is involved in import of maltose/maltodextrin; maltose/maltodextrin transporter ATP-binding protein complement(928958..930076) Aggregatibacter aphrophilus NJ8700 8122883 YP_003007380.1 CDS malE NC_012913.1 930445 931650 D functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter periplasmic protein 930445..931650 Aggregatibacter aphrophilus NJ8700 8122884 YP_003007381.1 CDS malE NC_012913.1 931669 932859 D functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter periplasmic protein 931669..932859 Aggregatibacter aphrophilus NJ8700 8122885 YP_003007382.1 CDS malF NC_012913.1 932967 934514 D with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein 932967..934514 Aggregatibacter aphrophilus NJ8700 8122886 YP_003007383.1 CDS malG NC_012913.1 934530 935420 D with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease 934530..935420 Aggregatibacter aphrophilus NJ8700 8122887 YP_003007384.1 CDS malS NC_012913.1 935595 937646 D periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; periplasmic alpha-amylase 935595..937646 Aggregatibacter aphrophilus NJ8700 8122888 YP_003007385.1 CDS NT05HA_0923 NC_012913.1 937799 938404 D identified by Glimmer3; putative; hypothetical protein 937799..938404 Aggregatibacter aphrophilus NJ8700 8122889 YP_003007386.1 CDS NT05HA_0924 NC_012913.1 938388 939098 D identified by Glimmer3; putative; hypothetical protein 938388..939098 Aggregatibacter aphrophilus NJ8700 8122890 YP_003007387.1 CDS NT05HA_0925 NC_012913.1 939088 942081 D identified by Glimmer3; putative; hypothetical protein 939088..942081 Aggregatibacter aphrophilus NJ8700 8122891 YP_003007388.1 CDS NT05HA_0926 NC_012913.1 942277 943110 D identified by Glimmer3; putative; hypothetical protein 942277..943110 Aggregatibacter aphrophilus NJ8700 8122892 YP_003007389.1 CDS NT05HA_0927 NC_012913.1 943190 944242 D identified by Glimmer3; putative; hypothetical protein 943190..944242 Aggregatibacter aphrophilus NJ8700 8122893 YP_003007390.1 CDS NT05HA_0928 NC_012913.1 944336 945268 D identified by Glimmer3; putative; hypothetical protein 944336..945268 Aggregatibacter aphrophilus NJ8700 8122894 YP_003007391.1 CDS NT05HA_0929 NC_012913.1 945410 945523 R identified by Glimmer3; putative; hypothetical protein complement(945410..945523) Aggregatibacter aphrophilus NJ8700 8122895 YP_003007392.1 CDS NT05HA_0930 NC_012913.1 945532 946905 D identified by Glimmer3; putative; hypothetical protein 945532..946905 Aggregatibacter aphrophilus NJ8700 8122896 YP_003007393.1 CDS NT05HA_0931 NC_012913.1 947026 948207 D identified by Glimmer3; putative; hypothetical protein 947026..948207 Aggregatibacter aphrophilus NJ8700 8122897 YP_003007394.1 CDS NT05HA_0932 NC_012913.1 948197 949990 D identified by Glimmer3; putative; hypothetical protein 948197..949990 Aggregatibacter aphrophilus NJ8700 8122898 YP_003007395.1 CDS NT05HA_0933 NC_012913.1 949998 950900 D identified by Glimmer3; putative; hypothetical protein 949998..950900 Aggregatibacter aphrophilus NJ8700 8122899 YP_003007396.1 CDS NT05HA_0935 NC_012913.1 950940 951113 R identified by Glimmer3; putative; hypothetical protein complement(950940..951113) Aggregatibacter aphrophilus NJ8700 8122900 YP_003007397.1 CDS NT05HA_0934 NC_012913.1 951079 951195 D identified by Glimmer3; putative; hypothetical protein 951079..951195 Aggregatibacter aphrophilus NJ8700 8122901 YP_003007398.1 CDS NT05HA_0936 NC_012913.1 951203 952099 D identified by Glimmer3; putative; hypothetical protein 951203..952099 Aggregatibacter aphrophilus NJ8700 8122902 YP_003007399.1 CDS NT05HA_0937 NC_012913.1 952460 953203 D identified by Glimmer3; putative; hypothetical protein 952460..953203 Aggregatibacter aphrophilus NJ8700 8122903 YP_003007400.1 CDS NT05HA_0938 NC_012913.1 953154 953294 R identified by Glimmer3; putative; hypothetical protein complement(953154..953294) Aggregatibacter aphrophilus NJ8700 8122904 YP_003007401.1 CDS NT05HA_0939 NC_012913.1 953364 954395 D identified by Glimmer3; putative; hypothetical protein 953364..954395 Aggregatibacter aphrophilus NJ8700 8122905 YP_003007402.1 CDS NT05HA_0940 NC_012913.1 954482 957199 R Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT complement(954482..957199) Aggregatibacter aphrophilus NJ8700 8122906 YP_003007403.1 CDS NT05HA_0941 NC_012913.1 957381 959771 D identified by Glimmer3; putative; maltodextrin phosphorylase 957381..959771 Aggregatibacter aphrophilus NJ8700 8122907 YP_003007404.1 CDS malQ NC_012913.1 959911 961986 D amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase 959911..961986 Aggregatibacter aphrophilus NJ8700 8122908 YP_003007405.1 CDS NT05HA_0943 NC_012913.1 962043 963806 D identified by Glimmer3; putative; neopullulanase 962043..963806 Aggregatibacter aphrophilus NJ8700 8122909 YP_003007406.1 CDS NT05HA_0944 NC_012913.1 963871 964452 R catalyzes the formation of 2-octaprenylphenol from 3-octaprenyl-4-hydroxybenzoate; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(963871..964452) Aggregatibacter aphrophilus NJ8700 8122910 YP_003007407.1 CDS NT05HA_0945 NC_012913.1 964442 965953 R Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase complement(964442..965953) Aggregatibacter aphrophilus NJ8700 8122911 YP_003007408.1 CDS NT05HA_0946 NC_012913.1 965969 966526 R identified by Glimmer3; putative; CvpA family protein complement(965969..966526) Aggregatibacter aphrophilus NJ8700 8122912 YP_003007409.1 CDS NT05HA_0947 NC_012913.1 966714 967160 R identified by Glimmer3; putative; hypothetical protein complement(966714..967160) Aggregatibacter aphrophilus NJ8700 8122913 YP_003007410.1 CDS NT05HA_0948 NC_012913.1 967315 968649 D AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase 967315..968649 Aggregatibacter aphrophilus NJ8700 8122914 YP_003007411.1 CDS NT05HA_0949 NC_012913.1 968721 970856 D catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase 968721..970856 Aggregatibacter aphrophilus NJ8700 8122915 YP_003007412.1 CDS NT05HA_0950 NC_012913.1 970920 971720 D identified by Glimmer3; putative; hypothetical protein 970920..971720 Aggregatibacter aphrophilus NJ8700 8122916 YP_003007413.1 CDS NT05HA_0951 NC_012913.1 971897 973255 D identified by Glimmer3; putative; (G-3-P transporter) (G-3-P permease); glycerol-3-phosphate transporter 971897..973255 Aggregatibacter aphrophilus NJ8700 8122917 YP_003007414.1 CDS NT05HA_0952 NC_012913.1 973715 974221 R identified by Glimmer3; putative; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(973715..974221) Aggregatibacter aphrophilus NJ8700 8122918 YP_003007415.1 CDS NT05HA_0953 NC_012913.1 974214 975479 R identified by Glimmer3; putative; poly(A) polymerase complement(974214..975479) Aggregatibacter aphrophilus NJ8700 8122919 YP_003007416.1 CDS NT05HA_0954 NC_012913.1 975631 975756 D identified by Glimmer3; putative; hypothetical protein 975631..975756 Aggregatibacter aphrophilus NJ8700 8122920 YP_003007417.1 CDS NT05HA_0955 NC_012913.1 975784 976221 R identified by Glimmer3; putative; RNA polymerase-binding protein DksA complement(975784..976221) Aggregatibacter aphrophilus NJ8700 8122921 YP_003007418.1 CDS NT05HA_0956 NC_012913.1 976369 976518 D identified by Glimmer3; putative; hypothetical protein 976369..976518 Aggregatibacter aphrophilus NJ8700 8122922 YP_003007419.1 CDS NT05HA_0957 NC_012913.1 976677 978944 D identified by Glimmer3; putative; DNA internalization-related competence protein ComEC/Rec2 976677..978944 Aggregatibacter aphrophilus NJ8700 8122923 YP_003007420.1 CDS NT05HA_0958 NC_012913.1 978989 980737 D involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease 978989..980737 Aggregatibacter aphrophilus NJ8700 8122924 YP_003007421.1 CDS NT05HA_0959 NC_012913.1 980756 981733 D identified by Glimmer3; putative; tetraacyldisaccharide 4'-kinase 980756..981733 Aggregatibacter aphrophilus NJ8700 8122925 YP_003007422.1 CDS NT05HA_0960 NC_012913.1 981830 982009 D identified by Glimmer3; putative; hypothetical protein 981830..982009 Aggregatibacter aphrophilus NJ8700 8122926 YP_003007423.1 CDS NT05HA_0961 NC_012913.1 982011 982784 D CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase 982011..982784 Aggregatibacter aphrophilus NJ8700 8122927 YP_003007424.1 CDS uvrC NC_012913.1 982998 984836 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 982998..984836 Aggregatibacter aphrophilus NJ8700 8122928 YP_003007425.1 CDS NT05HA_0963 NC_012913.1 985196 986530 D identified by Glimmer3; putative; aspartyl-tRNA synthetase 985196..986530 Aggregatibacter aphrophilus NJ8700 8122929 YP_003007426.1 CDS NT05HA_0964 NC_012913.1 986918 987928 R identified by Glimmer3; putative; PurR protein complement(986918..987928) Aggregatibacter aphrophilus NJ8700 8122930 YP_003007427.1 CDS lacY NC_012913.1 988132 989388 D lactose/proton symporter; mediates lactose/proton symport through the membrane by utilizing the proton gradient to drive transport of galactosides; member of major facilitator superfamily; functions as a monomer with 12 transmembrane segments; galactoside permease 988132..989388 Aggregatibacter aphrophilus NJ8700 8122931 YP_003007428.1 CDS NT05HA_0966 NC_012913.1 989407 992445 D identified by Glimmer3; putative; beta-galactosidase 989407..992445 Aggregatibacter aphrophilus NJ8700 8122932 YP_003007429.1 CDS NT05HA_0967 NC_012913.1 992685 993776 R identified by Glimmer3; putative; PotD protein complement(992685..993776) Aggregatibacter aphrophilus NJ8700 8122933 YP_003007430.1 CDS NT05HA_0968 NC_012913.1 993796 994647 R identified by Glimmer3; putative; PotC protein complement(993796..994647) Aggregatibacter aphrophilus NJ8700 8122934 YP_003007431.1 CDS NT05HA_0969 NC_012913.1 994644 995501 R identified by Glimmer3; putative; PotB protein complement(994644..995501) Aggregatibacter aphrophilus NJ8700 8122935 YP_003007432.1 CDS NT05HA_0970 NC_012913.1 995498 996568 R identified by Glimmer3; putative; spermidine/putrescine import ATP-binding protein PotA complement(995498..996568) Aggregatibacter aphrophilus NJ8700 8122936 YP_003007433.1 CDS NT05HA_0971 NC_012913.1 996776 997732 R identified by Glimmer3; putative; selenide, water dikinase complement(996776..997732) Aggregatibacter aphrophilus NJ8700 8122937 YP_003007434.1 CDS pntB NC_012913.1 998002 999426 R catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase complement(998002..999426) Aggregatibacter aphrophilus NJ8700 8122938 YP_003007435.1 CDS pntA NC_012913.1 999437 1000969 R forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha complement(999437..1000969) Aggregatibacter aphrophilus NJ8700 8122939 YP_003007436.1 CDS NT05HA_0975 NC_012913.1 1001196 1001354 R identified by Glimmer3; putative; sugar fermentation stimulation protein complement(1001196..1001354) Aggregatibacter aphrophilus NJ8700 8122940 YP_003007437.1 CDS NT05HA_0974 NC_012913.1 1001349 1002071 D Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A 1001349..1002071 Aggregatibacter aphrophilus NJ8700 8122941 YP_003007438.1 CDS NT05HA_0976 NC_012913.1 1002374 1003561 D catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase 1002374..1003561 Aggregatibacter aphrophilus NJ8700 8122942 YP_003007439.1 CDS NT05HA_0977 NC_012913.1 1003664 1004590 D phosphorylates aminoimidazole ribotide (AIR) which forms 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate (HMP-P); synthesis of HMP-P from AIR is complex and requires the product of thiC gene at least; aminoimidazole riboside kinase 1003664..1004590 Aggregatibacter aphrophilus NJ8700 8122943 YP_003007440.1 CDS NT05HA_0978 NC_012913.1 1004664 1006118 D identified by Glimmer3; putative; sucrose-6-phosphate hydrolase 1004664..1006118 Aggregatibacter aphrophilus NJ8700 8122944 YP_003007441.1 CDS NT05HA_0979 NC_012913.1 1006131 1006745 D identified by Glimmer3; putative; protein tyrosine/serine phosphatase 1006131..1006745 Aggregatibacter aphrophilus NJ8700 8122945 YP_003007442.1 CDS truB NC_012913.1 1006798 1007718 R catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B complement(1006798..1007718) Aggregatibacter aphrophilus NJ8700 8122946 YP_003007443.1 CDS rbfA NC_012913.1 1007718 1008104 R associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A complement(1007718..1008104) Aggregatibacter aphrophilus NJ8700 8122947 YP_003007444.1 CDS NT05HA_0982 NC_012913.1 1008273 1010156 R identified by Glimmer3; putative; translation initiation factor IF-2 complement(1008273..1010156) Aggregatibacter aphrophilus NJ8700 8122948 YP_003007445.1 CDS NT05HA_0983 NC_012913.1 1010137 1010751 R identified by Glimmer3; putative; translation initiation factor IF-2 complement(1010137..1010751) Aggregatibacter aphrophilus NJ8700 8122949 YP_003007446.1 CDS nusA NC_012913.1 1010767 1012263 R modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA complement(1010767..1012263) Aggregatibacter aphrophilus NJ8700 8122950 YP_003007447.1 CDS NT05HA_0985 NC_012913.1 1012288 1012743 R in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein complement(1012288..1012743) Aggregatibacter aphrophilus NJ8700 8122951 YP_003007448.1 CDS NT05HA_0987 NC_012913.1 1013014 1013157 D identified by Glimmer3; putative; hypothetical protein 1013014..1013157 Aggregatibacter aphrophilus NJ8700 8122953 YP_003007449.1 CDS NT05HA_0988 NC_012913.1 1013152 1013403 R identified by Glimmer3; putative; hypothetical protein complement(1013152..1013403) Aggregatibacter aphrophilus NJ8700 8122954 YP_003007450.1 CDS NT05HA_0989 NC_012913.1 1013490 1014152 D identified by Glimmer3; putative; septum site-determining protein MinC 1013490..1014152 Aggregatibacter aphrophilus NJ8700 8122955 YP_003007451.1 CDS NT05HA_0990 NC_012913.1 1014174 1014512 R identified by Glimmer3; putative; similar to minC; hypothetical protein complement(1014174..1014512) Aggregatibacter aphrophilus NJ8700 8122956 YP_003007452.1 CDS NT05HA_0991 NC_012913.1 1014744 1015211 R identified by Glimmer3; putative; phosphohistidine phosphatase SixA complement(1014744..1015211) Aggregatibacter aphrophilus NJ8700 8122957 YP_003007453.1 CDS glmM NC_012913.1 1015224 1016561 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(1015224..1016561) Aggregatibacter aphrophilus NJ8700 8122958 YP_003007454.1 CDS NT05HA_0993 NC_012913.1 1016606 1017433 R identified by Glimmer3; putative; dihydropteroate synthase complement(1016606..1017433) Aggregatibacter aphrophilus NJ8700 8122959 YP_003007455.1 CDS NT05HA_0994 NC_012913.1 1017529 1018434 R identified by Glimmer3; putative; RarD protein complement(1017529..1018434) Aggregatibacter aphrophilus NJ8700 8122960 YP_003007456.1 CDS NT05HA_0995 NC_012913.1 1018574 1019035 D identified by Glimmer3; putative; Bkd operon transcriptional regulator 1018574..1019035 Aggregatibacter aphrophilus NJ8700 8122961 YP_003007457.1 CDS NT05HA_0996 NC_012913.1 1019042 1020124 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(1019042..1020124) Aggregatibacter aphrophilus NJ8700 8122962 YP_003007458.1 CDS NT05HA_0997 NC_012913.1 1020199 1020711 R identified by Glimmer3; putative; hypothetical protein complement(1020199..1020711) Aggregatibacter aphrophilus NJ8700 8122963 YP_003007459.1 CDS NT05HA_0998 NC_012913.1 1020850 1022097 R involved in the import of serine and threonine coupled with the import of sodium; serine/threonine transporter SstT complement(1020850..1022097) Aggregatibacter aphrophilus NJ8700 8122964 YP_003007460.1 CDS NT05HA_0999 NC_012913.1 1022417 1022866 D identified by Glimmer3; putative; ImpA 1022417..1022866 Aggregatibacter aphrophilus NJ8700 8122965 YP_003007461.1 CDS NT05HA_1000 NC_012913.1 1022948 1023322 D identified by Glimmer3; putative; ISPsy8, transposase OrfA 1022948..1023322 Aggregatibacter aphrophilus NJ8700 8122966 YP_003007462.1 CDS NT05HA_1001 NC_012913.1 1023355 1024125 D identified by Glimmer3; putative; integrase, catalytic region 1023355..1024125 Aggregatibacter aphrophilus NJ8700 8122967 YP_003007463.1 CDS NT05HA_1002 NC_012913.1 1024217 1024723 R identified by Glimmer3; putative; NlpC complement(1024217..1024723) Aggregatibacter aphrophilus NJ8700 8122968 YP_003007464.1 CDS NT05HA_1003 NC_012913.1 1024903 1025757 R catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase complement(1024903..1025757) Aggregatibacter aphrophilus NJ8700 8122969 YP_003007465.1 CDS NT05HA_1004 NC_012913.1 1025767 1026666 R identified by Glimmer3; putative; protein-(glutamine-N5) methyltransferase complement(1025767..1026666) Aggregatibacter aphrophilus NJ8700 8122970 YP_003007466.1 CDS NT05HA_1005 NC_012913.1 1026914 1027186 R identified by Glimmer3; putative; hypothetical protein complement(1026914..1027186) Aggregatibacter aphrophilus NJ8700 8122971 YP_003007467.1 CDS prfA NC_012913.1 1027231 1028313 R recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 complement(1027231..1028313) Aggregatibacter aphrophilus NJ8700 8122972 YP_003007468.1 CDS NT05HA_1007 NC_012913.1 1028459 1028914 R identified by Glimmer3; putative; outer membrane lipoprotein pcp complement(1028459..1028914) Aggregatibacter aphrophilus NJ8700 8122973 YP_003007469.1 CDS NT05HA_1008 NC_012913.1 1028994 1029404 R identified by Glimmer3; putative; hypothetical protein complement(1028994..1029404) Aggregatibacter aphrophilus NJ8700 8122974 YP_003007470.1 CDS NT05HA_1009 NC_012913.1 1029457 1029582 R identified by Glimmer3; putative; hypothetical protein complement(1029457..1029582) Aggregatibacter aphrophilus NJ8700 8122975 YP_003007471.1 CDS argS NC_012913.1 1029671 1031404 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1029671..1031404 Aggregatibacter aphrophilus NJ8700 8122976 YP_003007472.1 CDS NT05HA_1011 NC_012913.1 1031764 1033197 R identified by Glimmer3; putative; hypothetical protein complement(1031764..1033197) Aggregatibacter aphrophilus NJ8700 8122977 YP_003007473.1 CDS dnaK NC_012913.1 1033480 1035381 D heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK 1033480..1035381 Aggregatibacter aphrophilus NJ8700 8122978 YP_003007474.1 CDS NT05HA_1013 NC_012913.1 1035478 1036062 D identified by Glimmer3; putative; HNH nuclease 1035478..1036062 Aggregatibacter aphrophilus NJ8700 8122979 YP_003007475.1 CDS NT05HA_1014 NC_012913.1 1036160 1037284 D chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ 1036160..1037284 Aggregatibacter aphrophilus NJ8700 8122980 YP_003007476.1 CDS NT05HA_1015 NC_012913.1 1037421 1038464 R identified by Glimmer3; putative; outer membrane protein 39 complement(1037421..1038464) Aggregatibacter aphrophilus NJ8700 8122981 YP_003007477.1 CDS NT05HA_1016 NC_012913.1 1038673 1039860 R catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase complement(1038673..1039860) Aggregatibacter aphrophilus NJ8700 8122982 YP_003007478.1 CDS NT05HA_1017 NC_012913.1 1040050 1040607 D identified by Glimmer3; putative; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1040050..1040607 Aggregatibacter aphrophilus NJ8700 8121315 YP_003007479.1 CDS NT05HA_1020 NC_012913.1 1041061 1041894 D identified by Glimmer3; putative; Soj 1041061..1041894 Aggregatibacter aphrophilus NJ8700 8121318 YP_003007480.1 CDS NT05HA_1021 NC_012913.1 1041969 1043276 D identified by Glimmer3; putative; replicative DNA helicase 1041969..1043276 Aggregatibacter aphrophilus NJ8700 8121319 YP_003007481.1 CDS NT05HA_1022 NC_012913.1 1043269 1045011 D identified by Glimmer3; putative; hypothetical protein 1043269..1045011 Aggregatibacter aphrophilus NJ8700 8121320 YP_003007482.1 CDS NT05HA_1023 NC_012913.1 1044998 1045555 D identified by Glimmer3; putative; hypothetical protein 1044998..1045555 Aggregatibacter aphrophilus NJ8700 8121321 YP_003007483.1 CDS NT05HA_1027 NC_012913.1 1046916 1047128 D identified by Glimmer3; putative; hypothetical protein 1046916..1047128 Aggregatibacter aphrophilus NJ8700 8121323 YP_003007484.1 CDS NT05HA_1028 NC_012913.1 1047142 1047909 D identified by Glimmer3; putative; hypothetical protein 1047142..1047909 Aggregatibacter aphrophilus NJ8700 8121324 YP_003007485.1 CDS NT05HA_1029 NC_012913.1 1048070 1048555 D identified by Glimmer3; putative; hypothetical protein 1048070..1048555 Aggregatibacter aphrophilus NJ8700 8121325 YP_003007486.1 CDS NT05HA_1030 NC_012913.1 1048690 1048932 D identified by Glimmer3; putative; hypothetical protein 1048690..1048932 Aggregatibacter aphrophilus NJ8700 8121326 YP_003007487.1 CDS NT05HA_1031 NC_012913.1 1049126 1049386 D identified by Glimmer3; putative; hypothetical protein 1049126..1049386 Aggregatibacter aphrophilus NJ8700 8121327 YP_003007488.1 CDS NT05HA_1032 NC_012913.1 1049874 1050083 D identified by Glimmer3; putative; hypothetical protein 1049874..1050083 Aggregatibacter aphrophilus NJ8700 8121328 YP_003007489.1 CDS NT05HA_1033 NC_012913.1 1050090 1050281 R identified by Glimmer3; putative; hypothetical protein complement(1050090..1050281) Aggregatibacter aphrophilus NJ8700 8121329 YP_003007490.1 CDS NT05HA_1034 NC_012913.1 1050488 1050979 D identified by Glimmer3; putative; single-stranded DNA-binding protein 1050488..1050979 Aggregatibacter aphrophilus NJ8700 8121330 YP_003007491.1 CDS NT05HA_1035 NC_012913.1 1051052 1051555 D identified by Glimmer3; putative; hypothetical protein 1051052..1051555 Aggregatibacter aphrophilus NJ8700 8121331 YP_003007492.1 CDS NT05HA_1036 NC_012913.1 1051712 1051909 D identified by Glimmer3; putative; hypothetical protein 1051712..1051909 Aggregatibacter aphrophilus NJ8700 8121332 YP_003007493.1 CDS NT05HA_1037 NC_012913.1 1051924 1052421 D identified by Glimmer3; putative; DNA N-4 cytosine methyltransferase 1051924..1052421 Aggregatibacter aphrophilus NJ8700 8121333 YP_003007494.1 CDS NT05HA_1038 NC_012913.1 1052414 1053565 D identified by Glimmer3; putative; DNA-cytosine methyltransferase 1052414..1053565 Aggregatibacter aphrophilus NJ8700 8121334 YP_003007495.1 CDS NT05HA_1039 NC_012913.1 1053959 1054948 R identified by Glimmer3; putative; hypothetical protein complement(1053959..1054948) Aggregatibacter aphrophilus NJ8700 8121335 YP_003007496.1 CDS NT05HA_1040 NC_012913.1 1055080 1055283 D identified by Glimmer3; putative; hypothetical protein 1055080..1055283 Aggregatibacter aphrophilus NJ8700 8121336 YP_003007497.1 CDS NT05HA_1041 NC_012913.1 1055531 1056178 D identified by Glimmer3; putative; DNA topoisomerase 3 1055531..1056178 Aggregatibacter aphrophilus NJ8700 8121337 YP_003007498.1 CDS NT05HA_1042 NC_012913.1 1056408 1056686 D identified by Glimmer3; putative; hypothetical protein 1056408..1056686 Aggregatibacter aphrophilus NJ8700 8121338 YP_003007499.1 CDS NT05HA_1043 NC_012913.1 1056966 1057679 R identified by Glimmer3; putative; hypothetical protein complement(1056966..1057679) Aggregatibacter aphrophilus NJ8700 8121339 YP_003007500.1 CDS NT05HA_1044 NC_012913.1 1057669 1058589 R identified by Glimmer3; putative; hypothetical protein complement(1057669..1058589) Aggregatibacter aphrophilus NJ8700 8121340 YP_003007501.1 CDS NT05HA_1045 NC_012913.1 1058667 1058954 R identified by Glimmer3; putative; outer membrane lipoprotein LolB complement(1058667..1058954) Aggregatibacter aphrophilus NJ8700 8121341 YP_003007502.1 CDS NT05HA_1046 NC_012913.1 1058989 1059429 R identified by Glimmer3; putative; integral membrane protein complement(1058989..1059429) Aggregatibacter aphrophilus NJ8700 8121342 YP_003007503.1 CDS NT05HA_1047 NC_012913.1 1059665 1059886 R identified by Glimmer3; putative; Tra5 protein complement(1059665..1059886) Aggregatibacter aphrophilus NJ8700 8121343 YP_003007504.1 CDS NT05HA_1048 NC_012913.1 1060396 1060674 R identified by Glimmer3; putative; hypothetical protein complement(1060396..1060674) Aggregatibacter aphrophilus NJ8700 8121344 YP_003007505.1 CDS NT05HA_1049 NC_012913.1 1060671 1060850 R identified by Glimmer3; putative; hypothetical protein complement(1060671..1060850) Aggregatibacter aphrophilus NJ8700 8121345 YP_003007506.1 CDS NT05HA_1050 NC_012913.1 1061129 1063015 D identified by Glimmer3; putative; relaxase 1061129..1063015 Aggregatibacter aphrophilus NJ8700 8121346 YP_003007507.1 CDS NT05HA_1051 NC_012913.1 1063008 1063919 D identified by Glimmer3; putative; integrase 1063008..1063919 Aggregatibacter aphrophilus NJ8700 8121347 YP_003007508.1 CDS NT05HA_1053 NC_012913.1 1064363 1065190 R identified by Glimmer3; putative; putative glucanotransferase complement(1064363..1065190) Aggregatibacter aphrophilus NJ8700 8121349 YP_003007509.1 CDS NT05HA_1054 NC_012913.1 1065374 1065871 D identified by Glimmer3; putative; hypothetical protein 1065374..1065871 Aggregatibacter aphrophilus NJ8700 8121350 YP_003007510.1 CDS NT05HA_1055 NC_012913.1 1065929 1066351 R identified by Glimmer3; putative; hypothetical protein complement(1065929..1066351) Aggregatibacter aphrophilus NJ8700 8121351 YP_003007511.1 CDS NT05HA_1056 NC_012913.1 1066987 1068372 D identified by Glimmer3; putative; cytochrome c peroxidase 1066987..1068372 Aggregatibacter aphrophilus NJ8700 8121352 YP_003007512.1 CDS NT05HA_1057 NC_012913.1 1068456 1069613 R identified by Glimmer3; putative; ribonuclease D complement(1068456..1069613) Aggregatibacter aphrophilus NJ8700 8121353 YP_003007513.1 CDS NT05HA_1058 NC_012913.1 1069681 1071369 R Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(1069681..1071369) Aggregatibacter aphrophilus NJ8700 8121354 YP_003007514.1 CDS NT05HA_1059 NC_012913.1 1071413 1071970 R identified by Glimmer3; putative; outer membrane protein complement(1071413..1071970) Aggregatibacter aphrophilus NJ8700 8121355 YP_003007515.1 CDS NT05HA_1060 NC_012913.1 1072001 1072723 R identified by Glimmer3; putative; putative M22 peptidase-like protein YeaZ complement(1072001..1072723) Aggregatibacter aphrophilus NJ8700 8121356 YP_003007516.1 CDS NT05HA_1061 NC_012913.1 1072732 1074693 R identified by Glimmer3; putative; ATP-dependent helicase, dexd family complement(1072732..1074693) Aggregatibacter aphrophilus NJ8700 8121357 YP_003007517.1 CDS NT05HA_1062 NC_012913.1 1074736 1075560 D identified by Glimmer3; putative; aldose 1-epimerase 1074736..1075560 Aggregatibacter aphrophilus NJ8700 8121358 YP_003007518.1 CDS NT05HA_1063 NC_012913.1 1075706 1075882 R identified by Glimmer3; putative; zinc-containing alcohol dehydrogenase superfamily complement(1075706..1075882) Aggregatibacter aphrophilus NJ8700 8121359 YP_003007519.1 CDS NT05HA_1064 NC_012913.1 1075930 1077405 R identified by Glimmer3; putative; carnitine/choline ABC transporter, glycine betaine/carnitine/choline-binding protein; glycine betaine complement(1075930..1077405) Aggregatibacter aphrophilus NJ8700 8121360 YP_003007520.1 CDS NT05HA_1065 NC_012913.1 1077549 1078373 R identified by Glimmer3; putative; (Quaternary-amine-transporting ATPase); glycine betaine transport ATP-binding protein opuAA complement(1077549..1078373) Aggregatibacter aphrophilus NJ8700 8121361 YP_003007521.1 CDS NT05HA_1066 NC_012913.1 1078363 1079223 R identified by Glimmer3; putative; NmrA family protein complement(1078363..1079223) Aggregatibacter aphrophilus NJ8700 8121362 YP_003007522.1 CDS NT05HA_1067 NC_012913.1 1079762 1080619 D identified by Glimmer3; putative; thioredoxin domain-containing protein 1079762..1080619 Aggregatibacter aphrophilus NJ8700 8121363 YP_003007523.1 CDS NT05HA_1068 NC_012913.1 1080675 1081625 D identified by Glimmer3; putative; thioredoxin-disulfide reductase 1080675..1081625 Aggregatibacter aphrophilus NJ8700 8121364 YP_003007524.1 CDS NT05HA_1071 NC_012913.1 1083487 1085220 D in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 1083487..1085220 Aggregatibacter aphrophilus NJ8700 8121366 YP_003007525.1 CDS NT05HA_1072 NC_012913.1 1085483 1086349 D identified by Glimmer3; putative; acyl-CoA thioesterase II 1085483..1086349 Aggregatibacter aphrophilus NJ8700 8121367 YP_003007526.1 CDS NT05HA_1073 NC_012913.1 1086366 1086485 D identified by Glimmer3; putative; hypothetical protein 1086366..1086485 Aggregatibacter aphrophilus NJ8700 8121368 YP_003007527.1 CDS NT05HA_1074 NC_012913.1 1086564 1087301 R identified by Glimmer3; putative; 30S ribosomal protein S15 complement(1086564..1087301) Aggregatibacter aphrophilus NJ8700 8121369 YP_003007528.1 CDS NT05HA_1075 NC_012913.1 1087365 1087991 R identified by Glimmer3; putative; lipoprotein complement(1087365..1087991) Aggregatibacter aphrophilus NJ8700 8121370 YP_003007529.1 CDS NT05HA_1076 NC_012913.1 1088077 1088661 D identified by Glimmer3; putative; hypothetical protein 1088077..1088661 Aggregatibacter aphrophilus NJ8700 8121371 YP_003007530.1 CDS NT05HA_1077 NC_012913.1 1088697 1089581 R identified by Glimmer3; putative; WcaA protein complement(1088697..1089581) Aggregatibacter aphrophilus NJ8700 8121372 YP_003007531.1 CDS NT05HA_1078 NC_012913.1 1089574 1090773 R identified by Glimmer3; putative; hypothetical protein complement(1089574..1090773) Aggregatibacter aphrophilus NJ8700 8121373 YP_003007532.1 CDS NT05HA_1079 NC_012913.1 1090781 1091551 R identified by Glimmer3; putative; hypothetical protein complement(1090781..1091551) Aggregatibacter aphrophilus NJ8700 8121374 YP_003007533.1 CDS NT05HA_1080 NC_012913.1 1091688 1093211 D identified by Glimmer3; putative; polysaccharide biosynthesis protein 1091688..1093211 Aggregatibacter aphrophilus NJ8700 8121375 YP_003007534.1 CDS NT05HA_1081 NC_012913.1 1093208 1094167 D identified by Glimmer3; putative; polysaccharide pyruvyl transferase YvfF 1093208..1094167 Aggregatibacter aphrophilus NJ8700 8121376 YP_003007535.1 CDS NT05HA_1082 NC_012913.1 1094164 1094910 D identified by Glimmer3; putative; molybdate ABC transporter permease 1094164..1094910 Aggregatibacter aphrophilus NJ8700 8121377 YP_003007536.1 CDS NT05HA_1083 NC_012913.1 1094972 1095154 D identified by Glimmer3; putative; hypothetical protein 1094972..1095154 Aggregatibacter aphrophilus NJ8700 8121378 YP_003007537.1 CDS NT05HA_1084 NC_012913.1 1095166 1095993 D catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 1095166..1095993 Aggregatibacter aphrophilus NJ8700 8121379 YP_003007538.1 CDS NT05HA_1085 NC_012913.1 1096177 1097724 D identified by Glimmer3; putative; hypothetical protein 1096177..1097724 Aggregatibacter aphrophilus NJ8700 8121380 YP_003007539.1 CDS uvrD NC_012913.1 1097784 1099958 R unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II complement(1097784..1099958) Aggregatibacter aphrophilus NJ8700 8121381 YP_003007540.1 CDS NT05HA_1087 NC_012913.1 1100125 1101474 R identified by Glimmer3; putative; gluconate permease complement(1100125..1101474) Aggregatibacter aphrophilus NJ8700 8121382 YP_003007541.1 CDS NT05HA_1088 NC_012913.1 1101690 1102208 D identified by Glimmer3; putative; shikimate kinase 1101690..1102208 Aggregatibacter aphrophilus NJ8700 8121383 YP_003007542.1 CDS NT05HA_1089 NC_012913.1 1102175 1102300 D identified by Glimmer3; putative; (Gluconate utilization systemGNT-I transcriptional repressor); GntR family transcriptional regulator 1102175..1102300 Aggregatibacter aphrophilus NJ8700 8121384 YP_003007543.1 CDS NT05HA_1090 NC_012913.1 1102270 1103268 R identified by Glimmer3; putative; hypothetical protein complement(1102270..1103268) Aggregatibacter aphrophilus NJ8700 8121385 YP_003007544.1 CDS NT05HA_1091 NC_012913.1 1103319 1104143 R involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein complement(1103319..1104143) Aggregatibacter aphrophilus NJ8700 8121386 YP_003007545.1 CDS NT05HA_1092 NC_012913.1 1104379 1104990 D identified by Glimmer3; putative; formate dehydrogenase subunit alpha 1104379..1104990 Aggregatibacter aphrophilus NJ8700 8121387 YP_003007546.1 CDS NT05HA_1093 NC_012913.1 1105039 1107468 D identified by Glimmer3; putative; formate dehydrogenase subunit alpha 1105039..1107468 Aggregatibacter aphrophilus NJ8700 8121388 YP_003007547.1 CDS NT05HA_1094 NC_012913.1 1107479 1108396 D identified by Glimmer3; putative; formate dehydrogenase subunit beta 1107479..1108396 Aggregatibacter aphrophilus NJ8700 8121389 YP_003007548.1 CDS NT05HA_1095 NC_012913.1 1108389 1109102 D identified by Glimmer3; putative; formate dehydrogenase subunit gamma 1108389..1109102 Aggregatibacter aphrophilus NJ8700 8121390 YP_003007549.1 CDS modC NC_012913.1 1109208 1110269 R Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein complement(1109208..1110269) Aggregatibacter aphrophilus NJ8700 8121391 YP_003007550.1 CDS modB NC_012913.1 1110256 1110984 R part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease complement(1110256..1110984) Aggregatibacter aphrophilus NJ8700 8121392 YP_003007551.1 CDS NT05HA_1098 NC_012913.1 1111052 1111816 R identified by Glimmer3; putative; molybdate ABC transporter substrate-binding protein complement(1111052..1111816) Aggregatibacter aphrophilus NJ8700 8121393 YP_003007552.1 CDS NT05HA_1099 NC_012913.1 1112051 1112830 D identified by Glimmer3; putative; ModE 1112051..1112830 Aggregatibacter aphrophilus NJ8700 8121394 YP_003007553.1 CDS NT05HA_1100 NC_012913.1 1112901 1113497 R identified by Glimmer3; putative; (Nucleoside 5'-monophosphatephosphohydrolase) (5'-deoxyribonucleotidase); hypothetical protein complement(1112901..1113497) Aggregatibacter aphrophilus NJ8700 8123143 YP_003007554.1 CDS NT05HA_1101 NC_012913.1 1113507 1114535 R identified by Glimmer3; putative; periplasmic serine peptidase DegS complement(1113507..1114535) Aggregatibacter aphrophilus NJ8700 8123224 YP_003007555.1 CDS NT05HA_1102 NC_012913.1 1114543 1115667 R identified by Glimmer3; putative; riboflavin biosynthesis protein RibD complement(1114543..1115667) Aggregatibacter aphrophilus NJ8700 8123225 YP_003007556.1 CDS nrdR NC_012913.1 1115664 1116119 R identified by Glimmer3; putative; transcriptional regulator NrdR complement(1115664..1116119) Aggregatibacter aphrophilus NJ8700 8123226 YP_003007557.1 CDS NT05HA_1104 NC_012913.1 1116231 1117319 R identified by Glimmer3; putative; putative RNA 2'-O-ribose methyltransferase complement(1116231..1117319) Aggregatibacter aphrophilus NJ8700 8123227 YP_003007558.1 CDS NT05HA_1105 NC_012913.1 1117324 1118217 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(1117324..1118217) Aggregatibacter aphrophilus NJ8700 8123228 YP_003007559.1 CDS NT05HA_1106 NC_012913.1 1118306 1118476 R identified by Glimmer3; putative; (RNA-uridine isomerase) (RNA pseudouridylate synthase) (ORF2); RNA pseudouridine synthase complement(1118306..1118476) Aggregatibacter aphrophilus NJ8700 8123229 YP_003007560.1 CDS NT05HA_1107 NC_012913.1 1118494 1118643 D identified by Glimmer3; putative; hypothetical protein 1118494..1118643 Aggregatibacter aphrophilus NJ8700 8123230 YP_003007561.1 CDS NT05HA_1108 NC_012913.1 1118682 1119701 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1118682..1119701 Aggregatibacter aphrophilus NJ8700 8123231 YP_003007562.1 CDS NT05HA_1109 NC_012913.1 1119818 1120753 R oxidizes malate to oxaloacetate; malate dehydrogenase complement(1119818..1120753) Aggregatibacter aphrophilus NJ8700 8123232 YP_003007563.1 CDS NT05HA_1110 NC_012913.1 1121020 1121487 D identified by Glimmer3; putative; arginine repressor 1121020..1121487 Aggregatibacter aphrophilus NJ8700 8123233 YP_003007564.1 CDS NT05HA_1111 NC_012913.1 1121506 1122390 D identified by Glimmer3; putative; hypothetical protein 1121506..1122390 Aggregatibacter aphrophilus NJ8700 8123234 YP_003007565.1 CDS NT05HA_1112 NC_012913.1 1122404 1122538 R identified by Glimmer3; putative; hypothetical protein complement(1122404..1122538) Aggregatibacter aphrophilus NJ8700 8123235 YP_003007566.1 CDS NT05HA_1113 NC_012913.1 1122553 1123134 D identified by Glimmer3; putative; (na(+)-translocating nqr subunit e) (na(+)-nqr subunit e) (nqr complexsubunit e) (nqr-1 subunit e); Na(+)-translocating NADH-quinone reductase subunit E 1122553..1123134 Aggregatibacter aphrophilus NJ8700 8123236 YP_003007567.1 CDS NT05HA_1114 NC_012913.1 1123134 1123727 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 1123134..1123727 Aggregatibacter aphrophilus NJ8700 8123237 YP_003007568.1 CDS NT05HA_1115 NC_012913.1 1123728 1126259 D identified by Glimmer3; putative; electron transport complex protein RnfC 1123728..1126259 Aggregatibacter aphrophilus NJ8700 8123238 YP_003007569.1 CDS rnfD NC_012913.1 1126270 1127349 D RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 1126270..1127349 Aggregatibacter aphrophilus NJ8700 8123239 YP_003007570.1 CDS NT05HA_1117 NC_012913.1 1127360 1127971 D identified by Glimmer3; putative; electron transport complex protein RnfG 1127360..1127971 Aggregatibacter aphrophilus NJ8700 8123240 YP_003007571.1 CDS NT05HA_1118 NC_012913.1 1127971 1128687 D identified by Glimmer3; putative; electron transport complex protein RnfE 1127971..1128687 Aggregatibacter aphrophilus NJ8700 8123241 YP_003007572.1 CDS NT05HA_1119 NC_012913.1 1128899 1129540 D identified by Glimmer3; putative; endonuclease III 1128899..1129540 Aggregatibacter aphrophilus NJ8700 8123242 YP_003007573.1 CDS NT05HA_1122 NC_012913.1 1131047 1131991 R identified by Glimmer3; putative; transketolase, central region complement(1131047..1131991) Aggregatibacter aphrophilus NJ8700 8123244 YP_003007574.1 CDS NT05HA_1123 NC_012913.1 1131981 1132805 R identified by Glimmer3; putative; transketolase, N- subunit complement(1131981..1132805) Aggregatibacter aphrophilus NJ8700 8123245 YP_003007575.1 CDS NT05HA_1126 NC_012913.1 1134193 1134462 R identified by Glimmer3; putative; PTS system galactitol-specific transporter subunit IIB complement(1134193..1134462) Aggregatibacter aphrophilus NJ8700 8123247 YP_003007576.1 CDS NT05HA_1127 NC_012913.1 1134635 1134796 D identified by Glimmer3; putative; hypothetical protein 1134635..1134796 Aggregatibacter aphrophilus NJ8700 8123248 YP_003007577.1 CDS NT05HA_1128 NC_012913.1 1134918 1136861 R Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase complement(1134918..1136861) Aggregatibacter aphrophilus NJ8700 8123249 YP_003007578.1 CDS NT05HA_1129 NC_012913.1 1136963 1138315 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(1136963..1138315) Aggregatibacter aphrophilus NJ8700 8123250 YP_003007579.1 CDS NT05HA_1130 NC_012913.1 1138324 1139016 R identified by Glimmer3; putative; hypothetical protein complement(1138324..1139016) Aggregatibacter aphrophilus NJ8700 8123251 YP_003007580.1 CDS NT05HA_1131 NC_012913.1 1139016 1139426 R identified by Glimmer3; putative; hypothetical protein complement(1139016..1139426) Aggregatibacter aphrophilus NJ8700 8123252 YP_003007581.1 CDS NT05HA_1132 NC_012913.1 1139624 1139845 R identified by Glimmer3; putative; hypothetical protein complement(1139624..1139845) Aggregatibacter aphrophilus NJ8700 8123253 YP_003007582.1 CDS NT05HA_1133 NC_012913.1 1139863 1140888 R identified by Glimmer3; putative; inner membrane protein YeeE complement(1139863..1140888) Aggregatibacter aphrophilus NJ8700 8123254 YP_003007583.1 CDS NT05HA_1135 NC_012913.1 1141544 1142044 D identified by Glimmer3; putative; protein ParB 1141544..1142044 Aggregatibacter aphrophilus NJ8700 8123256 YP_003007584.1 CDS NT05HA_1136 NC_012913.1 1142048 1143247 D identified by Glimmer3; putative; aminotransferase, class-V 1142048..1143247 Aggregatibacter aphrophilus NJ8700 8123257 YP_003007585.1 CDS NT05HA_1137 NC_012913.1 1143244 1143624 D identified by Glimmer3; putative; Fe-S metabolism associated domain subfamily 1143244..1143624 Aggregatibacter aphrophilus NJ8700 8123258 YP_003007586.1 CDS NT05HA_1138 NC_012913.1 1143684 1145114 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(1143684..1145114) Aggregatibacter aphrophilus NJ8700 8123259 YP_003007587.1 CDS NT05HA_1139 NC_012913.1 1145243 1146178 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1145243..1146178 Aggregatibacter aphrophilus NJ8700 8123260 YP_003007588.1 CDS NT05HA_1140 NC_012913.1 1146226 1146798 R identified by Glimmer3; putative; TorD protein complement(1146226..1146798) Aggregatibacter aphrophilus NJ8700 8123261 YP_003007589.1 CDS NT05HA_1141 NC_012913.1 1146798 1147409 R identified by Glimmer3; putative; NAD dehydrogenase complement(1146798..1147409) Aggregatibacter aphrophilus NJ8700 8123262 YP_003007590.1 CDS NT05HA_1142 NC_012913.1 1147411 1147863 R identified by Glimmer3; putative; nodulation efficiency protein D complement(1147411..1147863) Aggregatibacter aphrophilus NJ8700 8123263 YP_003007591.1 CDS NT05HA_1143 NC_012913.1 1147884 1148810 R identified by Glimmer3; putative; HflC protein complement(1147884..1148810) Aggregatibacter aphrophilus NJ8700 8123264 YP_003007592.1 CDS cpdB NC_012913.1 1149068 1151044 R periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein complement(1149068..1151044) Aggregatibacter aphrophilus NJ8700 8123265 YP_003007593.1 CDS NT05HA_1145 NC_012913.1 1151247 1153472 R identified by Glimmer3; putative; TonB-dependent hemoglobin/transferrin/lactoferrin family receptor complement(1151247..1153472) Aggregatibacter aphrophilus NJ8700 8123266 YP_003007594.1 CDS NT05HA_1146 NC_012913.1 1153653 1154555 D identified by Glimmer3; putative; ABC transporter substrate-binding protein 1153653..1154555 Aggregatibacter aphrophilus NJ8700 8123267 YP_003007595.1 CDS NT05HA_1147 NC_012913.1 1154632 1155597 D identified by Glimmer3; putative; ABC transporter permease 1154632..1155597 Aggregatibacter aphrophilus NJ8700 8123268 YP_003007596.1 CDS NT05HA_1148 NC_012913.1 1155587 1156528 D identified by Glimmer3; putative; hypothetical protein 1155587..1156528 Aggregatibacter aphrophilus NJ8700 8123269 YP_003007597.1 CDS NT05HA_1149 NC_012913.1 1156540 1157298 D identified by Glimmer3; putative; iron(III) dicitrate transport ATP-binding protein FecE 1156540..1157298 Aggregatibacter aphrophilus NJ8700 8123270 YP_003007598.1 CDS NT05HA_1150 NC_012913.1 1157412 1159097 R identified by Glimmer3; putative; formate dehydrogenase subunit alpha complement(1157412..1159097) Aggregatibacter aphrophilus NJ8700 8123271 YP_003007599.1 CDS NT05HA_1151 NC_012913.1 1159146 1159571 R identified by Glimmer3; putative; (Formate-hydrogen-lyase-linked,selenocysteine-containing polypeptide) (Formate dehydrogenase-H alphasubunit) (FDH-H); formate dehydrogenase H complement(1159146..1159571) Aggregatibacter aphrophilus NJ8700 8123272 YP_003007600.1 CDS NT05HA_1152 NC_012913.1 1159825 1160922 D identified by Glimmer3; putative; 707UM ORF; hypothetical protein 1159825..1160922 Aggregatibacter aphrophilus NJ8700 8123273 YP_003007601.1 CDS hycI NC_012913.1 1161023 1161481 R involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease complement(1161023..1161481) Aggregatibacter aphrophilus NJ8700 8123274 YP_003007602.1 CDS NT05HA_1154 NC_012913.1 1161471 1161878 R identified by Glimmer3; putative; hydrogenase-4 subunit J complement(1161471..1161878) Aggregatibacter aphrophilus NJ8700 8123275 YP_003007603.1 CDS NT05HA_1155 NC_012913.1 1162113 1162889 R identified by Glimmer3; putative; hydrogenase-4 subunit I complement(1162113..1162889) Aggregatibacter aphrophilus NJ8700 8123276 YP_003007604.1 CDS NT05HA_1156 NC_012913.1 1162886 1163533 R identified by Glimmer3; putative; hydrogenase-4 subunit H complement(1162886..1163533) Aggregatibacter aphrophilus NJ8700 8123277 YP_003007605.1 CDS NT05HA_1157 NC_012913.1 1163546 1165276 R identified by Glimmer3; putative; hydrogenase-4 subunit G complement(1163546..1165276) Aggregatibacter aphrophilus NJ8700 8123278 YP_003007606.1 CDS NT05HA_1158 NC_012913.1 1165296 1166834 R identified by Glimmer3; putative; hydrogenase-4 subunit F complement(1165296..1166834) Aggregatibacter aphrophilus NJ8700 8123279 YP_003007607.1 CDS hyfE NC_012913.1 1166839 1167477 R interacts with formate dehydrogenase to produce an active formate hydrogenlyase complex which cleaves formate to dihydrogen and carbon dioxide; hydrogenase 4 membrane subunit complement(1166839..1167477) Aggregatibacter aphrophilus NJ8700 8123280 YP_003007608.1 CDS NT05HA_1160 NC_012913.1 1167493 1168938 R identified by Glimmer3; putative; hydrogenase-4 subunit D complement(1167493..1168938) Aggregatibacter aphrophilus NJ8700 8123281 YP_003007609.1 CDS NT05HA_1161 NC_012913.1 1168950 1169912 R identified by Glimmer3; putative; hydrogenase-4 subunit C complement(1168950..1169912) Aggregatibacter aphrophilus NJ8700 8123282 YP_003007610.1 CDS NT05HA_1162 NC_012913.1 1169923 1171944 R identified by Glimmer3; putative; hydrogenase-4 subunit B complement(1169923..1171944) Aggregatibacter aphrophilus NJ8700 8123283 YP_003007611.1 CDS NT05HA_1163 NC_012913.1 1171982 1172581 R identified by Glimmer3; putative; electron transport protein HydN complement(1171982..1172581) Aggregatibacter aphrophilus NJ8700 8123284 YP_003007612.1 CDS NT05HA_1164 NC_012913.1 1172873 1175161 D identified by Glimmer3; putative; [NiFe] hydrogenase maturation protein HypF 1172873..1175161 Aggregatibacter aphrophilus NJ8700 8123285 YP_003007613.1 CDS NT05HA_1165 NC_012913.1 1175334 1176149 D catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase 1175334..1176149 Aggregatibacter aphrophilus NJ8700 8123286 YP_003007614.1 CDS NT05HA_1166 NC_012913.1 1176263 1177084 D identified by Glimmer3; putative; aminoglycoside adenylyltransferase 1176263..1177084 Aggregatibacter aphrophilus NJ8700 8123287 YP_003007615.1 CDS NT05HA_1167 NC_012913.1 1177382 1177867 D identified by Glimmer3; putative; hypothetical protein 1177382..1177867 Aggregatibacter aphrophilus NJ8700 8123288 YP_003007616.1 CDS NT05HA_1168 NC_012913.1 1178003 1178302 R identified by Glimmer3; putative; mitomycin resistance protein McrB complement(1178003..1178302) Aggregatibacter aphrophilus NJ8700 8123289 YP_003007617.1 CDS NT05HA_1169 NC_012913.1 1178684 1179697 R identified by Glimmer3; putative; hydrogenase expression/formation protein HypE complement(1178684..1179697) Aggregatibacter aphrophilus NJ8700 8123290 YP_003007618.1 CDS NT05HA_1170 NC_012913.1 1179697 1180809 R identified by Glimmer3; putative; hydrogenase expression/formation protein HypD complement(1179697..1180809) Aggregatibacter aphrophilus NJ8700 8123291 YP_003007619.1 CDS NT05HA_1171 NC_012913.1 1180835 1181641 R GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB complement(1180835..1181641) Aggregatibacter aphrophilus NJ8700 8123292 YP_003007620.1 CDS NT05HA_1172 NC_012913.1 1181720 1182343 R identified by Glimmer3; putative; cobalt transport ATP-binding protein CbiO complement(1181720..1182343) Aggregatibacter aphrophilus NJ8700 8123293 YP_003007621.1 CDS NT05HA_1173 NC_012913.1 1182340 1183005 R identified by Glimmer3; putative; cobalt membrane transport protein CbiQ complement(1182340..1183005) Aggregatibacter aphrophilus NJ8700 8123294 YP_003007622.1 CDS NT05HA_1174 NC_012913.1 1183002 1183655 R catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM complement(1183002..1183655) Aggregatibacter aphrophilus NJ8700 8123295 YP_003007623.1 CDS NT05HA_1175 NC_012913.1 1183655 1184161 R identified by Glimmer3; putative; 50S ribosomal protein L25 complement(1183655..1184161) Aggregatibacter aphrophilus NJ8700 8123296 YP_003007624.1 CDS NT05HA_1176 NC_012913.1 1184168 1184863 R identified by Glimmer3; putative; putative periplasmic binding protein CbiK complement(1184168..1184863) Aggregatibacter aphrophilus NJ8700 8123297 YP_003007625.1 CDS NT05HA_1177 NC_012913.1 1185024 1185716 R enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase complement(1185024..1185716) Aggregatibacter aphrophilus NJ8700 8123298 YP_003007626.1 CDS NT05HA_1178 NC_012913.1 1185729 1186403 R identified by Glimmer3; putative; thiol-disulfide interchange protein complement(1185729..1186403) Aggregatibacter aphrophilus NJ8700 8123299 YP_003007627.1 CDS NT05HA_1179 NC_012913.1 1186412 1188133 R identified by Glimmer3; putative; single-stranded-DNA-specific exonuclease RecJ complement(1186412..1188133) Aggregatibacter aphrophilus NJ8700 8123300 YP_003007628.1 CDS NT05HA_1180 NC_012913.1 1188146 1188829 R identified by Glimmer3; putative; thiol:disulfide interchange protein DsbC complement(1188146..1188829) Aggregatibacter aphrophilus NJ8700 8123301 YP_003007629.1 CDS NT05HA_1181 NC_012913.1 1188913 1189074 D identified by Glimmer3; putative; peptide chain release factor 2 (RF-2) 1188913..1189074 Aggregatibacter aphrophilus NJ8700 8123302 YP_003007630.1 CDS NT05HA_1182 NC_012913.1 1189226 1190095 D identified by Glimmer3; putative; peptide chain release factor 2 (RF-2) 1189226..1190095 Aggregatibacter aphrophilus NJ8700 8122746 YP_003007631.1 CDS lysS NC_012913.1 1190151 1191659 D class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase 1190151..1191659 Aggregatibacter aphrophilus NJ8700 8122747 YP_003007632.1 CDS NT05HA_1184 NC_012913.1 1191943 1192236 R identified by Glimmer3; putative; hypothetical protein complement(1191943..1192236) Aggregatibacter aphrophilus NJ8700 8122748 YP_003007633.1 CDS NT05HA_1185 NC_012913.1 1192256 1193215 R identified by Glimmer3; putative; curved DNA-binding protein complement(1192256..1193215) Aggregatibacter aphrophilus NJ8700 8122749 YP_003007634.1 CDS engA NC_012913.1 1193495 1195024 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1193495..1195024 Aggregatibacter aphrophilus NJ8700 8122750 YP_003007635.1 CDS NT05HA_1187 NC_012913.1 1195065 1196888 R identified by Glimmer3; putative; hypothetical protein complement(1195065..1196888) Aggregatibacter aphrophilus NJ8700 8122751 YP_003007636.1 CDS NT05HA_1188 NC_012913.1 1196907 1198049 R identified by Glimmer3; putative; sugar efflux transporter complement(1196907..1198049) Aggregatibacter aphrophilus NJ8700 8122752 YP_003007637.1 CDS NT05HA_1189 NC_012913.1 1198100 1199302 R identified by Glimmer3; putative; hypothetical protein complement(1198100..1199302) Aggregatibacter aphrophilus NJ8700 8122753 YP_003007638.1 CDS dcd NC_012913.1 1199303 1199887 R Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase complement(1199303..1199887) Aggregatibacter aphrophilus NJ8700 8122754 YP_003007639.1 CDS NT05HA_1191 NC_012913.1 1199897 1200547 R functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase complement(1199897..1200547) Aggregatibacter aphrophilus NJ8700 8122755 YP_003007640.1 CDS NT05HA_1192 NC_012913.1 1200818 1201858 D identified by Glimmer3; putative; hypothetical protein 1200818..1201858 Aggregatibacter aphrophilus NJ8700 8122756 YP_003007641.1 CDS NT05HA_1193 NC_012913.1 1201817 1201933 R identified by Glimmer3; putative; ferric transporter ATP-binding subunit complement(1201817..1201933) Aggregatibacter aphrophilus NJ8700 8122757 YP_003007642.1 CDS NT05HA_1194 NC_012913.1 1202013 1203047 D identified by Glimmer3; putative; TbpA protein 1202013..1203047 Aggregatibacter aphrophilus NJ8700 8122758 YP_003007643.1 CDS NT05HA_1195 NC_012913.1 1203113 1205170 D identified by Glimmer3; putative; ferric transport system permease FbpB 1203113..1205170 Aggregatibacter aphrophilus NJ8700 8122759 YP_003007644.1 CDS fbpC NC_012913.1 1205201 1206247 D Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import; ferric transporter ATP-binding subunit 1205201..1206247 Aggregatibacter aphrophilus NJ8700 8122760 YP_003007645.1 CDS NT05HA_1197 NC_012913.1 1206461 1208668 D identified by Glimmer3; putative; hypothetical protein 1206461..1208668 Aggregatibacter aphrophilus NJ8700 8122761 YP_003007646.1 CDS NT05HA_1198 NC_012913.1 1208914 1209714 R identified by Glimmer3; putative; inositol-1-monophosphatase complement(1208914..1209714) Aggregatibacter aphrophilus NJ8700 8122762 YP_003007647.1 CDS NT05HA_1199 NC_012913.1 1209866 1210600 D identified by Glimmer3; putative; TrmH family RNA methyltransferase 1209866..1210600 Aggregatibacter aphrophilus NJ8700 8122763 YP_003007648.1 CDS NT05HA_1200 NC_012913.1 1210661 1211131 D identified by Glimmer3; putative; iron-sulfur cluster assembly transcription factor IscR 1210661..1211131 Aggregatibacter aphrophilus NJ8700 8122764 YP_003007649.1 CDS NT05HA_1201 NC_012913.1 1211197 1212411 D catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase 1211197..1212411 Aggregatibacter aphrophilus NJ8700 8122765 YP_003007650.1 CDS NT05HA_1202 NC_012913.1 1212471 1212854 D identified by Glimmer3; putative; FeS cluster assembly scaffold IscU 1212471..1212854 Aggregatibacter aphrophilus NJ8700 8122766 YP_003007651.1 CDS NT05HA_1203 NC_012913.1 1213053 1213376 D identified by Glimmer3; putative; iron-sulfur cluster assembly protein IscA 1213053..1213376 Aggregatibacter aphrophilus NJ8700 8122767 YP_003007652.1 CDS hscB NC_012913.1 1213385 1213909 D J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB 1213385..1213909 Aggregatibacter aphrophilus NJ8700 8122768 YP_003007653.1 CDS hscA NC_012913.1 1213933 1215792 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 1213933..1215792 Aggregatibacter aphrophilus NJ8700 8122769 YP_003007654.1 CDS NT05HA_1206 NC_012913.1 1215804 1216145 D identified by Glimmer3; putative; 2Fe-2S type ferredoxin 1215804..1216145 Aggregatibacter aphrophilus NJ8700 8122770 YP_003007655.1 CDS NT05HA_1207 NC_012913.1 1216145 1216339 D identified by Glimmer3; putative; FeS assembly protein IscX 1216145..1216339 Aggregatibacter aphrophilus NJ8700 8122771 YP_003007656.1 CDS metG NC_012913.1 1216471 1218531 R methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase complement(1216471..1218531) Aggregatibacter aphrophilus NJ8700 8122772 YP_003007657.1 CDS NT05HA_1209 NC_012913.1 1218701 1219813 D identified by Glimmer3; putative; putative ATPase 1218701..1219813 Aggregatibacter aphrophilus NJ8700 8122773 YP_003007658.1 CDS NT05HA_1210 NC_012913.1 1220251 1220883 D identified by Glimmer3; putative; hypothetical protein 1220251..1220883 Aggregatibacter aphrophilus NJ8700 8122774 YP_003007659.1 CDS NT05HA_1211 NC_012913.1 1220899 1221921 D identified by Glimmer3; putative; high-affinity nickel-transporter 1220899..1221921 Aggregatibacter aphrophilus NJ8700 8122775 YP_003007660.1 CDS NT05HA_1213 NC_012913.1 1222470 1224563 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 1222470..1224563 Aggregatibacter aphrophilus NJ8700 8122777 YP_003007661.1 CDS NT05HA_1214 NC_012913.1 1224552 1224674 R identified by Glimmer3; putative; excinuclease ABC subunit B complement(1224552..1224674) Aggregatibacter aphrophilus NJ8700 8122778 YP_003007662.1 CDS NT05HA_1215 NC_012913.1 1224640 1226022 R identified by Glimmer3; putative; protease DegQ complement(1224640..1226022) Aggregatibacter aphrophilus NJ8700 8122779 YP_003007663.1 CDS NT05HA_1216 NC_012913.1 1226289 1227959 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1226289..1227959 Aggregatibacter aphrophilus NJ8700 8122780 YP_003007664.1 CDS NT05HA_1217 NC_012913.1 1228064 1228972 R identified by Glimmer3; putative; outer membrane protein 100 complement(1228064..1228972) Aggregatibacter aphrophilus NJ8700 8122781 YP_003007665.1 CDS NT05HA_1218 NC_012913.1 1229277 1229435 R identified by Glimmer3; putative; hypothetical protein complement(1229277..1229435) Aggregatibacter aphrophilus NJ8700 8122782 YP_003007666.1 CDS NT05HA_1219 NC_012913.1 1229468 1231366 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1229468..1231366 Aggregatibacter aphrophilus NJ8700 8122783 YP_003007667.1 CDS NT05HA_1221 NC_012913.1 1231437 1231562 R identified by Glimmer3; putative; DNA topoisomerase IV subunit A complement(1231437..1231562) Aggregatibacter aphrophilus NJ8700 8122784 YP_003007668.1 CDS NT05HA_1220 NC_012913.1 1231527 1233779 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1231527..1233779 Aggregatibacter aphrophilus NJ8700 8122785 YP_003007669.1 CDS NT05HA_1222 NC_012913.1 1233803 1233934 D identified by Glimmer3; putative; hypothetical protein 1233803..1233934 Aggregatibacter aphrophilus NJ8700 8122786 YP_003007670.1 CDS NT05HA_1223 NC_012913.1 1234058 1234540 R identified by Glimmer3; putative; DNA protection during starvation protein complement(1234058..1234540) Aggregatibacter aphrophilus NJ8700 8122787 YP_003007671.1 CDS NT05HA_1224 NC_012913.1 1234731 1235891 D identified by Glimmer3; putative; multidrug resistance protein A 1234731..1235891 Aggregatibacter aphrophilus NJ8700 8122788 YP_003007672.1 CDS NT05HA_1225 NC_012913.1 1235904 1237418 D identified by Glimmer3; putative; multidrug resistance protein B 1235904..1237418 Aggregatibacter aphrophilus NJ8700 8122789 YP_003007673.1 CDS NT05HA_1226 NC_012913.1 1237675 1238730 D identified by Glimmer3; putative; TbpA protein 1237675..1238730 Aggregatibacter aphrophilus NJ8700 8122790 YP_003007674.1 CDS NT05HA_1227 NC_012913.1 1238884 1239162 D identified by Glimmer3; putative; HTH-type transcriptional regulator HipB 1238884..1239162 Aggregatibacter aphrophilus NJ8700 8122791 YP_003007675.1 CDS NT05HA_1228 NC_012913.1 1239162 1240442 D identified by Glimmer3; putative; protein HipA 1239162..1240442 Aggregatibacter aphrophilus NJ8700 8122792 YP_003007676.1 CDS valS NC_012913.1 1240525 1243389 R valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase complement(1240525..1243389) Aggregatibacter aphrophilus NJ8700 8122793 YP_003007677.1 CDS NT05HA_1230 NC_012913.1 1243445 1243984 R identified by Glimmer3; putative; hypothetical protein complement(1243445..1243984) Aggregatibacter aphrophilus NJ8700 8122794 YP_003007678.1 CDS NT05HA_1231 NC_012913.1 1243977 1244303 R identified by Glimmer3; putative; hypothetical protein complement(1243977..1244303) Aggregatibacter aphrophilus NJ8700 8122795 YP_003007679.1 CDS NT05HA_1232 NC_012913.1 1244381 1244827 R binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi complement(1244381..1244827) Aggregatibacter aphrophilus NJ8700 8122796 YP_003007680.1 CDS fumC NC_012913.1 1245046 1246440 D class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase 1245046..1246440 Aggregatibacter aphrophilus NJ8700 8122797 YP_003007681.1 CDS NT05HA_1234 NC_012913.1 1246531 1247139 D identified by Glimmer3; putative; hypothetical protein 1246531..1247139 Aggregatibacter aphrophilus NJ8700 8122798 YP_003007682.1 CDS NT05HA_1235 NC_012913.1 1247180 1247719 R identified by Glimmer3; putative; hypothetical protein complement(1247180..1247719) Aggregatibacter aphrophilus NJ8700 8122799 YP_003007683.1 CDS NT05HA_1236 NC_012913.1 1247716 1248633 R identified by Glimmer3; putative; ribosomal protein S6 modification protein complement(1247716..1248633) Aggregatibacter aphrophilus NJ8700 8122800 YP_003007684.1 CDS NT05HA_1237 NC_012913.1 1248641 1249375 R NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A complement(1248641..1249375) Aggregatibacter aphrophilus NJ8700 8122801 YP_003007685.1 CDS NT05HA_1238 NC_012913.1 1249508 1249768 D identified by Glimmer3; putative; glutaredoxin, GrxA family 1249508..1249768 Aggregatibacter aphrophilus NJ8700 8122802 YP_003007686.1 CDS NT05HA_1239 NC_012913.1 1249884 1250015 R identified by Glimmer3; putative; hypothetical protein complement(1249884..1250015) Aggregatibacter aphrophilus NJ8700 8122803 YP_003007687.1 CDS NT05HA_1240 NC_012913.1 1250280 1250510 R identified by Glimmer3; putative; beta-galactosidase complement(1250280..1250510) Aggregatibacter aphrophilus NJ8700 8122804 YP_003007688.1 CDS NT05HA_1241 NC_012913.1 1250624 1251838 D identified by Glimmer3; putative; tyrosine-specific transport protein 1 1250624..1251838 Aggregatibacter aphrophilus NJ8700 8122805 YP_003007689.1 CDS NT05HA_1242 NC_012913.1 1252036 1252626 R identified by Glimmer3; putative; hypothetical protein complement(1252036..1252626) Aggregatibacter aphrophilus NJ8700 8122806 YP_003007690.1 CDS sgbE NC_012913.1 1252904 1253599 R catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase complement(1252904..1253599) Aggregatibacter aphrophilus NJ8700 8122807 YP_003007691.1 CDS NT05HA_1244 NC_012913.1 1253593 1254453 R L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; putative L-xylulose 5-phosphate 3-epimerase complement(1253593..1254453) Aggregatibacter aphrophilus NJ8700 8122808 YP_003007692.1 CDS NT05HA_1245 NC_012913.1 1254496 1255245 R negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR complement(1254496..1255245) Aggregatibacter aphrophilus NJ8700 8122809 YP_003007693.1 CDS NT05HA_1246 NC_012913.1 1255337 1256428 R identified by Glimmer3; putative; putative L-ascorbate 6-phosphate lactonase complement(1255337..1256428) Aggregatibacter aphrophilus NJ8700 8122810 YP_003007694.1 CDS NT05HA_1247 NC_012913.1 1256777 1258552 D identified by Glimmer3; putative; PTS system ascorbate-specific transporter subunits IICB 1256777..1258552 Aggregatibacter aphrophilus NJ8700 8122811 YP_003007695.1 CDS NT05HA_1248 NC_012913.1 1258606 1259067 D identified by Glimmer3; putative; (pts system ascorbate-specific eiia component); PTS system ascorbate-specific transporter subunit IIA 1258606..1259067 Aggregatibacter aphrophilus NJ8700 8122812 YP_003007696.1 CDS ulaD NC_012913.1 1259142 1259816 D catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase 1259142..1259816 Aggregatibacter aphrophilus NJ8700 8122813 YP_003007697.1 CDS NT05HA_1252 NC_012913.1 1260564 1261019 R identified by Glimmer3; putative; hypothetical protein complement(1260564..1261019) Aggregatibacter aphrophilus NJ8700 8122815 YP_003007698.1 CDS NT05HA_1253 NC_012913.1 1261102 1261437 R identified by Glimmer3; putative; similar to y2607; hypothetical protein complement(1261102..1261437) Aggregatibacter aphrophilus NJ8700 8122816 YP_003007699.1 CDS NT05HA_1254 NC_012913.1 1261635 1262717 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1261635..1262717 Aggregatibacter aphrophilus NJ8700 8122817 YP_003007700.1 CDS NT05HA_1255 NC_012913.1 1262797 1263894 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1262797..1263894 Aggregatibacter aphrophilus NJ8700 8122818 YP_003007701.1 CDS NT05HA_1256 NC_012913.1 1263905 1265230 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1263905..1265230 Aggregatibacter aphrophilus NJ8700 8122819 YP_003007702.1 CDS galM NC_012913.1 1265394 1266425 R catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase complement(1265394..1266425) Aggregatibacter aphrophilus NJ8700 8122820 YP_003007703.1 CDS NT05HA_1258 NC_012913.1 1266419 1267573 R catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase complement(1266419..1267573) Aggregatibacter aphrophilus NJ8700 8122821 YP_003007704.1 CDS NT05HA_1259 NC_012913.1 1267704 1268747 R catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase complement(1267704..1268747) Aggregatibacter aphrophilus NJ8700 8122822 YP_003007705.1 CDS NT05HA_1260 NC_012913.1 1269001 1270026 D identified by Glimmer3; putative; (Mgl repressor and galactoseultrainduction factor); HTH-type transcriptional regulator GalS 1269001..1270026 Aggregatibacter aphrophilus NJ8700 8122823 YP_003007706.1 CDS NT05HA_1261 NC_012913.1 1270236 1271228 D identified by Glimmer3; putative; (gbp) (d-galactose/d-glucose-binding protein) (ggbp); D-galactose-binding periplasmic protein 1270236..1271228 Aggregatibacter aphrophilus NJ8700 8122824 YP_003007707.1 CDS NT05HA_1262 NC_012913.1 1271302 1272840 D with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein 1271302..1272840 Aggregatibacter aphrophilus NJ8700 8122825 YP_003007708.1 CDS mglC NC_012913.1 1272859 1273869 D ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane component 1272859..1273869 Aggregatibacter aphrophilus NJ8700 8122586 YP_003007709.1 CDS NT05HA_1264 NC_012913.1 1273879 1274001 R identified by Glimmer3; putative; hypothetical protein complement(1273879..1274001) Aggregatibacter aphrophilus NJ8700 8122587 YP_003007710.1 CDS NT05HA_1265 NC_012913.1 1274082 1275932 R identified by Glimmer3; putative; aerobic respiration control sensor protein ArcB complement(1274082..1275932) Aggregatibacter aphrophilus NJ8700 8122588 YP_003007711.1 CDS NT05HA_1266 NC_012913.1 1276077 1277297 R FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase I complement(1276077..1277297) Aggregatibacter aphrophilus NJ8700 8122589 YP_003007712.1 CDS NT05HA_1267 NC_012913.1 1277468 1278802 D identified by Glimmer3; putative; protein YfcK 1277468..1278802 Aggregatibacter aphrophilus NJ8700 8122590 YP_003007713.1 CDS NT05HA_1268 NC_012913.1 1278799 1279476 D identified by Glimmer3; putative; tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC 1278799..1279476 Aggregatibacter aphrophilus NJ8700 8122591 YP_003007714.1 CDS NT05HA_1269 NC_012913.1 1279667 1282735 D identified by Glimmer3; putative; hemoglobin binding protein A 1279667..1282735 Aggregatibacter aphrophilus NJ8700 8122592 YP_003007715.1 CDS NT05HA_1270 NC_012913.1 1282725 1282838 D identified by Glimmer3; putative; hypothetical protein 1282725..1282838 Aggregatibacter aphrophilus NJ8700 8122593 YP_003007716.1 CDS NT05HA_1271 NC_012913.1 1282845 1283420 R with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE complement(1282845..1283420) Aggregatibacter aphrophilus NJ8700 8122594 YP_003007717.1 CDS NT05HA_1272 NC_012913.1 1283552 1284469 D identified by Glimmer3; putative; ATP-NAD kinase 1283552..1284469 Aggregatibacter aphrophilus NJ8700 8122595 YP_003007718.1 CDS NT05HA_1273 NC_012913.1 1284542 1286218 D identified by Glimmer3; putative; hypothetical protein 1284542..1286218 Aggregatibacter aphrophilus NJ8700 8122596 YP_003007719.1 CDS NT05HA_1274 NC_012913.1 1286215 1286418 R identified by Glimmer3; putative; DNA repair protein RecN complement(1286215..1286418) Aggregatibacter aphrophilus NJ8700 8122597 YP_003007720.1 CDS NT05HA_1275 NC_012913.1 1286447 1287208 D identified by Glimmer3; putative; beta-methylgalactoside transporter inner membrane component 1286447..1287208 Aggregatibacter aphrophilus NJ8700 8122598 YP_003007721.1 CDS NT05HA_1276 NC_012913.1 1287215 1287766 D Involved in cell division; probably involved in intracellular septation; intracellular septation protein A 1287215..1287766 Aggregatibacter aphrophilus NJ8700 8122599 YP_003007722.1 CDS NT05HA_1277 NC_012913.1 1287771 1288232 D identified by Glimmer3; putative; acyl-CoA thioester hydrolase YciA 1287771..1288232 Aggregatibacter aphrophilus NJ8700 8122600 YP_003007723.1 CDS NT05HA_1278 NC_012913.1 1288252 1288548 D unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein 1288252..1288548 Aggregatibacter aphrophilus NJ8700 8122601 YP_003007724.1 CDS NT05HA_1279 NC_012913.1 1288644 1290881 D identified by Glimmer3; putative; intracellular septation protein A 1288644..1290881 Aggregatibacter aphrophilus NJ8700 8122602 YP_003007725.1 CDS NT05HA_1280 NC_012913.1 1290914 1291210 D When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor 1290914..1291210 Aggregatibacter aphrophilus NJ8700 8122603 YP_003007726.1 CDS NT05HA_1281 NC_012913.1 1291200 1291961 D identified by Glimmer3; putative; monofunctional biosynthetic peptidoglycan transglycosylase 1291200..1291961 Aggregatibacter aphrophilus NJ8700 8122604 YP_003007727.1 CDS nhaA NC_012913.1 1292140 1293300 D exports sodium by using the electrochemical proton gradient to allow protons into the cell; functions in adaptation to high salinity and alkaline pH; activity increases at higher pH; downregulated at acidic pH; pH-dependent sodium/proton antiporter 1292140..1293300 Aggregatibacter aphrophilus NJ8700 8122605 YP_003007728.1 CDS NT05HA_1283 NC_012913.1 1293506 1293619 R identified by Glimmer3; putative; hypothetical protein complement(1293506..1293619) Aggregatibacter aphrophilus NJ8700 8122606 YP_003007729.1 CDS NT05HA_1284 NC_012913.1 1293951 1294148 R identified by Glimmer3; putative; ABC transporter ATPase/permease complement(1293951..1294148) Aggregatibacter aphrophilus NJ8700 8122607 YP_003007730.1 CDS NT05HA_1285 NC_012913.1 1294278 1294991 R identified by Glimmer3; putative; HmcB complement(1294278..1294991) Aggregatibacter aphrophilus NJ8700 8122608 YP_003007731.1 CDS secG NC_012913.1 1295584 1295934 R identified by Glimmer3; putative; preprotein translocase subunit SecG complement(1295584..1295934) Aggregatibacter aphrophilus NJ8700 8122610 YP_003007732.1 CDS NT05HA_1288 NC_012913.1 1295963 1296088 D identified by Glimmer3; putative; hypothetical protein 1295963..1296088 Aggregatibacter aphrophilus NJ8700 8122611 YP_003007733.1 CDS NT05HA_1289 NC_012913.1 1296095 1297999 R decatenates replicating daughter chromosomes; DNA topoisomerase III complement(1296095..1297999) Aggregatibacter aphrophilus NJ8700 8122612 YP_003007734.1 CDS recR NC_012913.1 1298015 1298617 R involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR complement(1298015..1298617) Aggregatibacter aphrophilus NJ8700 8122613 YP_003007735.1 CDS NT05HA_1291 NC_012913.1 1298704 1299033 R identified by Glimmer3; putative; hypothetical protein complement(1298704..1299033) Aggregatibacter aphrophilus NJ8700 8122614 YP_003007736.1 CDS NT05HA_1292 NC_012913.1 1299003 1299131 R identified by Glimmer3; putative; hypothetical protein complement(1299003..1299131) Aggregatibacter aphrophilus NJ8700 8122615 YP_003007737.1 CDS NT05HA_1293 NC_012913.1 1299217 1300287 D identified by Glimmer3; putative; metallophosphoesterase 1299217..1300287 Aggregatibacter aphrophilus NJ8700 8122616 YP_003007738.1 CDS fecB NC_012913.1 1300364 1301257 D part of the ABC transporter involved in the uptake of citrate-dependent Fe(3+); iron-dicitrate transporter substrate-binding subunit 1300364..1301257 Aggregatibacter aphrophilus NJ8700 8122617 YP_003007739.1 CDS fecC NC_012913.1 1301257 1302246 D part of the FecBCDE citrate-dependent iron (III) transport system; iron-dicitrate transporter permease subunit 1301257..1302246 Aggregatibacter aphrophilus NJ8700 8122618 YP_003007740.1 CDS fecD NC_012913.1 1302246 1303229 D Ferric citrate binds FecA and is transported across the outer membrane while transmits a signal across the cytoplasmic membrane protein FecR. FecR transmits a signal across the membrane and activates the cytoplasmic FecI that directs the RNA polymerase to express the fecABCDE operon (which encodes the ferric citrate outer membrane receptor and the ferric citrate ABC transporter), as well as fecIR. FecD is one of two (along with FecC) integral membrane protein components of the iron dicitrate ABC transporter.; iron-dicitrate transporter subunit FecD 1302246..1303229 Aggregatibacter aphrophilus NJ8700 8122619 YP_003007741.1 CDS fecE NC_012913.1 1303229 1303996 D Part of the FecBCDE citrate-dependent iron (III) transport system; iron-dicitrate transporter ATP-binding subunit 1303229..1303996 Aggregatibacter aphrophilus NJ8700 8122620 YP_003007742.1 CDS NT05HA_1298 NC_012913.1 1304082 1305053 R lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase complement(1304082..1305053) Aggregatibacter aphrophilus NJ8700 8122621 YP_003007743.1 CDS NT05HA_1299 NC_012913.1 1305440 1307248 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit 1305440..1307248 Aggregatibacter aphrophilus NJ8700 8122622 YP_003007744.1 CDS NT05HA_1300 NC_012913.1 1307253 1308023 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit 1307253..1308023 Aggregatibacter aphrophilus NJ8700 8122623 YP_003007745.1 CDS NT05HA_1301 NC_012913.1 1308035 1308427 D part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C 1308035..1308427 Aggregatibacter aphrophilus NJ8700 8122624 YP_003007746.1 CDS NT05HA_1302 NC_012913.1 1308437 1308781 D in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D 1308437..1308781 Aggregatibacter aphrophilus NJ8700 8122625 YP_003007747.1 CDS queA NC_012913.1 1308951 1310042 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1308951..1310042 Aggregatibacter aphrophilus NJ8700 8122626 YP_003007748.1 CDS NT05HA_1304 NC_012913.1 1310089 1311225 R identified by Glimmer3; putative; aminotransferase, class I and II complement(1310089..1311225) Aggregatibacter aphrophilus NJ8700 8122627 YP_003007749.1 CDS tgt NC_012913.1 1311536 1312687 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1311536..1312687 Aggregatibacter aphrophilus NJ8700 8122628 YP_003007750.1 CDS NT05HA_1306 NC_012913.1 1313223 1313741 D identified by Glimmer3; putative; hemerythrin HHE cation binding domain subfamily 1313223..1313741 Aggregatibacter aphrophilus NJ8700 8122629 YP_003007751.1 CDS NT05HA_1307 NC_012913.1 1313761 1313982 D identified by Glimmer3; putative; hypothetical protein 1313761..1313982 Aggregatibacter aphrophilus NJ8700 8122630 YP_003007752.1 CDS yajC NC_012913.1 1314144 1314443 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1314144..1314443 Aggregatibacter aphrophilus NJ8700 8122631 YP_003007753.1 CDS secD NC_012913.1 1314471 1316321 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1314471..1316321 Aggregatibacter aphrophilus NJ8700 8122632 YP_003007754.1 CDS secF NC_012913.1 1316338 1317303 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1316338..1317303 Aggregatibacter aphrophilus NJ8700 8122633 YP_003007755.1 CDS NT05HA_1311 NC_012913.1 1317523 1320150 D identified by Glimmer3; putative; heme acquisition system receptor 1317523..1320150 Aggregatibacter aphrophilus NJ8700 8122634 YP_003007756.1 CDS NT05HA_1312 NC_012913.1 1320498 1323119 D identified by Glimmer3; putative; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1320498..1323119 Aggregatibacter aphrophilus NJ8700 8122635 YP_003007757.1 CDS NT05HA_1313 NC_012913.1 1323078 1323842 R identified by Glimmer3; putative; aldehyde-alcohol dehydrogenase 2 complement(1323078..1323842) Aggregatibacter aphrophilus NJ8700 8122636 YP_003007758.1 CDS NT05HA_1314 NC_012913.1 1323933 1325441 R identified by Glimmer3; putative; methylmalonate-semialdehyde dehydrogenase complement(1323933..1325441) Aggregatibacter aphrophilus NJ8700 8122637 YP_003007759.1 CDS NT05HA_1315 NC_012913.1 1325677 1327020 R identified by Glimmer3; putative; sugar phosphate permease complement(1325677..1327020) Aggregatibacter aphrophilus NJ8700 8122638 YP_003007760.1 CDS NT05HA_1316 NC_012913.1 1327039 1327842 R identified by Glimmer3; putative; inositol-1-monophosphatase complement(1327039..1327842) Aggregatibacter aphrophilus NJ8700 8122639 YP_003007761.1 CDS NT05HA_1317 NC_012913.1 1328099 1328929 D identified by Glimmer3; putative; protein IolB 1328099..1328929 Aggregatibacter aphrophilus NJ8700 8122640 YP_003007762.1 CDS NT05HA_1318 NC_012913.1 1329208 1330050 D identified by Glimmer3; putative; transcriptional regulator 1329208..1330050 Aggregatibacter aphrophilus NJ8700 8122641 YP_003007763.1 CDS NT05HA_1319 NC_012913.1 1330093 1332003 R identified by Glimmer3; putative; myo-inositol catabolism protein complement(1330093..1332003) Aggregatibacter aphrophilus NJ8700 8122642 YP_003007764.1 CDS NT05HA_1320 NC_012913.1 1332313 1334253 D identified by Glimmer3; putative; putative malonic semialdehyde oxidative decarboxylase 1332313..1334253 Aggregatibacter aphrophilus NJ8700 8122643 YP_003007765.1 CDS NT05HA_1321 NC_012913.1 1334310 1335206 D identified by Glimmer3; putative; inosose dehydratase 1334310..1335206 Aggregatibacter aphrophilus NJ8700 8122644 YP_003007766.1 CDS NT05HA_1322 NC_012913.1 1335209 1336219 D identified by Glimmer3; putative; inositol 2-dehydrogenase 1335209..1336219 Aggregatibacter aphrophilus NJ8700 8122645 YP_003007767.1 CDS NT05HA_1323 NC_012913.1 1336344 1337318 R identified by Glimmer3; putative; hypothetical protein complement(1336344..1337318) Aggregatibacter aphrophilus NJ8700 8122646 YP_003007768.1 CDS NT05HA_1324 NC_012913.1 1337468 1338793 R identified by Glimmer3; putative; Sel1 repeat family complement(1337468..1338793) Aggregatibacter aphrophilus NJ8700 8122647 YP_003007769.1 CDS glyA NC_012913.1 1338904 1340166 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(1338904..1340166) Aggregatibacter aphrophilus NJ8700 8122648 YP_003007770.1 CDS NT05HA_1326 NC_012913.1 1340295 1340834 R identified by Glimmer3; putative; lipoprotein complement(1340295..1340834) Aggregatibacter aphrophilus NJ8700 8122649 YP_003007771.1 CDS NT05HA_1327 NC_012913.1 1341194 1341742 R identified by Glimmer3; putative; lipoprotein complement(1341194..1341742) Aggregatibacter aphrophilus NJ8700 8122650 YP_003007772.1 CDS NT05HA_1328 NC_012913.1 1341809 1343098 R catalyzes the formation of N(1)-(5-phospho-D-ribosyl)glycinamide from 5-phospho-D-ribosylamine and glycine in purine biosynthesis; phosphoribosylamine--glycine ligase complement(1341809..1343098) Aggregatibacter aphrophilus NJ8700 8122651 YP_003007773.1 CDS purH NC_012913.1 1343252 1344853 R involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase complement(1343252..1344853) Aggregatibacter aphrophilus NJ8700 8122652 YP_003007774.1 CDS NT05HA_1330 NC_012913.1 1345043 1346464 R identified by Glimmer3; putative; PTS system sucrose-specific transporter subunit IIBC complement(1345043..1346464) Aggregatibacter aphrophilus NJ8700 8122653 YP_003007775.1 CDS rsmC NC_012913.1 1346550 1347554 R 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase complement(1346550..1347554) Aggregatibacter aphrophilus NJ8700 8122654 YP_003007776.1 CDS NT05HA_1332 NC_012913.1 1347610 1348062 D with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 1347610..1348062 Aggregatibacter aphrophilus NJ8700 8122655 YP_003007777.1 CDS rimI NC_012913.1 1348075 1348518 D alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 1348075..1348518 Aggregatibacter aphrophilus NJ8700 8122656 YP_003007778.1 CDS NT05HA_1334 NC_012913.1 1348521 1351898 R identified by Glimmer3; putative; exodeoxyribonuclease V subunit gamma complement(1348521..1351898) Aggregatibacter aphrophilus NJ8700 8122657 YP_003007779.1 CDS NT05HA_1335 NC_012913.1 1351936 1352238 R identified by Glimmer3; putative; hypothetical protein complement(1351936..1352238) Aggregatibacter aphrophilus NJ8700 8122658 YP_003007780.1 CDS NT05HA_1336 NC_012913.1 1352222 1352908 R identified by Glimmer3; putative; hypothetical protein complement(1352222..1352908) Aggregatibacter aphrophilus NJ8700 8122659 YP_003007781.1 CDS NT05HA_1337 NC_012913.1 1352905 1353585 R identified by Glimmer3; putative; hypothetical protein complement(1352905..1353585) Aggregatibacter aphrophilus NJ8700 8122660 YP_003007782.1 CDS NT05HA_1338 NC_012913.1 1353635 1354156 R identified by Glimmer3; putative; type II secretory pathway, pseudopilin complement(1353635..1354156) Aggregatibacter aphrophilus NJ8700 8122661 YP_003007783.1 CDS NT05HA_1342 NC_012913.1 1354902 1355366 R identified by Glimmer3; putative; peptidoglycan-associated lipoprotein complement(1354902..1355366) Aggregatibacter aphrophilus NJ8700 8122665 YP_003007784.1 CDS tolB NC_012913.1 1355381 1356661 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(1355381..1356661) Aggregatibacter aphrophilus NJ8700 8122035 YP_003007785.1 CDS NT05HA_1346 NC_012913.1 1357967 1358389 R membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR complement(1357967..1358389) Aggregatibacter aphrophilus NJ8700 8122037 YP_003007786.1 CDS NT05HA_1347 NC_012913.1 1358514 1359203 R identified by Glimmer3; putative; protein TolQ complement(1358514..1359203) Aggregatibacter aphrophilus NJ8700 8122038 YP_003007787.1 CDS NT05HA_1348 NC_012913.1 1359233 1359637 R identified by Glimmer3; putative; tol-pal system-associated acyl-CoA thioesterase complement(1359233..1359637) Aggregatibacter aphrophilus NJ8700 8122039 YP_003007788.1 CDS NT05HA_1349 NC_012913.1 1360154 1361290 R identified by Glimmer3; putative; cytochrome D ubiquinol oxidase subunit II complement(1360154..1361290) Aggregatibacter aphrophilus NJ8700 8122040 YP_003007789.1 CDS NT05HA_1350 NC_012913.1 1361305 1362870 R identified by Glimmer3; putative; cytochrome D ubiquinol oxidase subunit 1 complement(1361305..1362870) Aggregatibacter aphrophilus NJ8700 8122041 YP_003007790.1 CDS NT05HA_1351 NC_012913.1 1363377 1363652 D identified by Glimmer3; putative; holliday junction DNA helicase B 1363377..1363652 Aggregatibacter aphrophilus NJ8700 8122042 YP_003007791.1 CDS ruvB NC_012913.1 1363707 1364711 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(1363707..1364711) Aggregatibacter aphrophilus NJ8700 8122043 YP_003007792.1 CDS ruvA NC_012913.1 1364727 1365341 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(1364727..1365341) Aggregatibacter aphrophilus NJ8700 8122044 YP_003007793.1 CDS ruvC NC_012913.1 1365406 1365978 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(1365406..1365978) Aggregatibacter aphrophilus NJ8700 8122045 YP_003007794.1 CDS NT05HA_1355 NC_012913.1 1366037 1366450 R identified by Glimmer3; putative; excinuclease ABC subunit A complement(1366037..1366450) Aggregatibacter aphrophilus NJ8700 8122046 YP_003007795.1 CDS NT05HA_1356 NC_012913.1 1366462 1367202 R identified by Glimmer3; putative; hypothetical protein complement(1366462..1367202) Aggregatibacter aphrophilus NJ8700 8122047 YP_003007796.1 CDS ntpA NC_012913.1 1367278 1367712 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(1367278..1367712) Aggregatibacter aphrophilus NJ8700 8122048 YP_003007797.1 CDS NT05HA_1358 NC_012913.1 1367743 1367931 R identified by Glimmer3; putative; hypothetical protein complement(1367743..1367931) Aggregatibacter aphrophilus NJ8700 8122049 YP_003007798.1 CDS NT05HA_1359 NC_012913.1 1367990 1368115 R identified by Glimmer3; putative; hypothetical protein complement(1367990..1368115) Aggregatibacter aphrophilus NJ8700 8122050 YP_003007799.1 CDS aspS NC_012913.1 1368239 1370017 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(1368239..1370017) Aggregatibacter aphrophilus NJ8700 8122051 YP_003007800.1 CDS NT05HA_1361 NC_012913.1 1370823 1371548 D identified by Glimmer3; putative; methyltransferase 1370823..1371548 Aggregatibacter aphrophilus NJ8700 8122052 YP_003007801.1 CDS NT05HA_1362 NC_012913.1 1371626 1374172 R identified by Glimmer3; putative; hypothetical protein complement(1371626..1374172) Aggregatibacter aphrophilus NJ8700 8122053 YP_003007802.1 CDS NT05HA_1363 NC_012913.1 1374306 1375637 R identified by Glimmer3; putative; glycerol-3-phosphate transporter complement(1374306..1375637) Aggregatibacter aphrophilus NJ8700 8122054 YP_003007803.1 CDS NT05HA_1364 NC_012913.1 1376145 1376348 D identified by Glimmer3; putative; hypothetical protein 1376145..1376348 Aggregatibacter aphrophilus NJ8700 8122055 YP_003007804.1 CDS NT05HA_1365 NC_012913.1 1376402 1378354 D identified by Glimmer3; putative; outer membrane protein 64 1376402..1378354 Aggregatibacter aphrophilus NJ8700 8122056 YP_003007805.1 CDS NT05HA_1366 NC_012913.1 1378504 1378911 D identified by Glimmer3; putative; lactoylglutathione lyase 1378504..1378911 Aggregatibacter aphrophilus NJ8700 8122057 YP_003007806.1 CDS NT05HA_1367 NC_012913.1 1378998 1379651 D Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1378998..1379651 Aggregatibacter aphrophilus NJ8700 8122058 YP_003007807.1 CDS NT05HA_1368 NC_012913.1 1380005 1381357 D identified by Glimmer3; putative; Na+/H+ antiporter NhaC 1380005..1381357 Aggregatibacter aphrophilus NJ8700 8122059 YP_003007808.1 CDS NT05HA_1369 NC_012913.1 1381421 1381987 D identified by Glimmer3; putative; hypothetical protein 1381421..1381987 Aggregatibacter aphrophilus NJ8700 8122060 YP_003007809.1 CDS NT05HA_1370 NC_012913.1 1382044 1383468 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1382044..1383468) Aggregatibacter aphrophilus NJ8700 8122061 YP_003007810.1 CDS NT05HA_1371 NC_012913.1 1383624 1383746 D identified by Glimmer3; putative; lipoprotein 1383624..1383746 Aggregatibacter aphrophilus NJ8700 8122062 YP_003007811.1 CDS NT05HA_1372 NC_012913.1 1383813 1383956 D identified by Glimmer3; putative; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 1383813..1383956 Aggregatibacter aphrophilus NJ8700 8122063 YP_003007812.1 CDS NT05HA_1373 NC_012913.1 1383985 1384713 R identified by Glimmer3; putative; hypothetical protein complement(1383985..1384713) Aggregatibacter aphrophilus NJ8700 8122064 YP_003007813.1 CDS NT05HA_1374 NC_012913.1 1384716 1384958 R identified by Glimmer3; putative; hypothetical protein complement(1384716..1384958) Aggregatibacter aphrophilus NJ8700 8122065 YP_003007814.1 CDS NT05HA_1375 NC_012913.1 1385054 1386025 R identified by Glimmer3; putative; octaprenyl-diphosphate synthase complement(1385054..1386025) Aggregatibacter aphrophilus NJ8700 8122066 YP_003007815.1 CDS rplU NC_012913.1 1386284 1386595 D identified by Glimmer3; putative; 50S ribosomal protein L21 1386284..1386595 Aggregatibacter aphrophilus NJ8700 8122067 YP_003007816.1 CDS rpmA NC_012913.1 1386616 1386873 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1386616..1386873 Aggregatibacter aphrophilus NJ8700 8122068 YP_003007817.1 CDS NT05HA_1378 NC_012913.1 1386937 1387854 D identified by Glimmer3; putative; 50S ribosomal protein L27 1386937..1387854 Aggregatibacter aphrophilus NJ8700 8122069 YP_003007818.1 CDS obgE NC_012913.1 1387891 1389063 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1387891..1389063 Aggregatibacter aphrophilus NJ8700 8122070 YP_003007819.1 CDS NT05HA_1380 NC_012913.1 1389060 1389185 R identified by Glimmer3; putative; GTP-binding protein Obg/CgtA complement(1389060..1389185) Aggregatibacter aphrophilus NJ8700 8122071 YP_003007820.1 CDS smpB NC_012913.1 1389137 1389619 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1389137..1389619) Aggregatibacter aphrophilus NJ8700 8122072 YP_003007821.1 CDS NT05HA_1382 NC_012913.1 1389745 1391211 D identified by Glimmer3; putative; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1389745..1391211 Aggregatibacter aphrophilus NJ8700 8122073 YP_003007822.1 CDS NT05HA_1383 NC_012913.1 1391368 1392993 D identified by Glimmer3; putative; oligopeptide ABC transporter periplasmic oligopeptide-binding protein 1391368..1392993 Aggregatibacter aphrophilus NJ8700 8122074 YP_003007823.1 CDS oppB NC_012913.1 1393081 1394001 D identified by Glimmer3; putative; oligopeptide transporter permease 1393081..1394001 Aggregatibacter aphrophilus NJ8700 8122075 YP_003007824.1 CDS NT05HA_1385 NC_012913.1 1394011 1394949 D identified by Glimmer3; putative; oligopeptide transport system permease OppC 1394011..1394949 Aggregatibacter aphrophilus NJ8700 8122076 YP_003007825.1 CDS oppD NC_012913.1 1394959 1395942 D identified by Glimmer3; putative; oligopeptide transporter ATP-binding protein 1394959..1395942 Aggregatibacter aphrophilus NJ8700 8122077 YP_003007826.1 CDS NT05HA_1387 NC_012913.1 1395939 1396937 D identified by Glimmer3; putative; oligopeptide transport ATP-binding protein OppF 1395939..1396937 Aggregatibacter aphrophilus NJ8700 8122078 YP_003007827.1 CDS NT05HA_1388 NC_012913.1 1397034 1397738 R identified by Glimmer3; putative; two-component response regulator complement(1397034..1397738) Aggregatibacter aphrophilus NJ8700 8122079 YP_003007828.1 CDS NT05HA_1389 NC_012913.1 1398004 1398144 R identified by Glimmer3; putative; 50S ribosomal protein L36 complement(1398004..1398144) Aggregatibacter aphrophilus NJ8700 8122080 YP_003007829.1 CDS rpmE2 NC_012913.1 1398155 1398421 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B complement(1398155..1398421) Aggregatibacter aphrophilus NJ8700 8122081 YP_003007830.1 CDS NT05HA_1391 NC_012913.1 1398591 1398728 R identified by Glimmer3; putative; hypothetical protein complement(1398591..1398728) Aggregatibacter aphrophilus NJ8700 8122082 YP_003007831.1 CDS NT05HA_1392 NC_012913.1 1398768 1399190 R identified by Glimmer3; putative; decarboxylase family protein complement(1398768..1399190) Aggregatibacter aphrophilus NJ8700 8122083 YP_003007832.1 CDS NT05HA_1393 NC_012913.1 1399339 1401132 D identified by Glimmer3; putative; (Protein-disulfide reductase) (Disulfide reductase) (C-type cytochromebiogenesis protein cycZ) (Inner membrane copper tolerance protein); thiol:disulfide interchange protein DsbD 1399339..1401132 Aggregatibacter aphrophilus NJ8700 8122084 YP_003007833.1 CDS NT05HA_1394 NC_012913.1 1401304 1401636 D identified by Glimmer3; putative; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1401304..1401636 Aggregatibacter aphrophilus NJ8700 8122085 YP_003007834.1 CDS NT05HA_1396 NC_012913.1 1402110 1404989 R identified by Glimmer3; putative; ribonuclease E complement(1402110..1404989) Aggregatibacter aphrophilus NJ8700 8122087 YP_003007835.1 CDS NT05HA_1397 NC_012913.1 1405459 1406418 D catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; 23S rRNA pseudouridylate synthase C 1405459..1406418 Aggregatibacter aphrophilus NJ8700 8122088 YP_003007836.1 CDS NT05HA_1398 NC_012913.1 1406517 1406840 R identified by Glimmer3; putative; thioredoxin complement(1406517..1406840) Aggregatibacter aphrophilus NJ8700 8122089 YP_003007837.1 CDS NT05HA_1399 NC_012913.1 1406961 1407956 R identified by Glimmer3; putative; D-lactate dehydrogenase complement(1406961..1407956) Aggregatibacter aphrophilus NJ8700 8122090 YP_003007838.1 CDS NT05HA_1400 NC_012913.1 1407976 1409253 R catalyzes the formation of cysteine from cystathionine; in B. subtilis also has O-acetylhomoserine thiolyase activity; cystathionine gamma-synthase complement(1407976..1409253) Aggregatibacter aphrophilus NJ8700 8122091 YP_003007839.1 CDS NT05HA_1404 NC_012913.1 1409824 1411176 R catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; functions in amino acid biosynthesis; lysine sensitive; aspartate kinase III complement(1409824..1411176) Aggregatibacter aphrophilus NJ8700 8122095 YP_003007840.1 CDS proA NC_012913.1 1411294 1412556 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(1411294..1412556) Aggregatibacter aphrophilus NJ8700 8122096 YP_003007841.1 CDS NT05HA_1406 NC_012913.1 1412722 1413528 D identified by Glimmer3; putative; gamma-glutamyl phosphate reductase 1412722..1413528 Aggregatibacter aphrophilus NJ8700 8122097 YP_003007842.1 CDS NT05HA_1407 NC_012913.1 1413595 1414380 R identified by Glimmer3; putative; Hsf complement(1413595..1414380) Aggregatibacter aphrophilus NJ8700 8122098 YP_003007843.1 CDS NT05HA_1408 NC_012913.1 1414450 1415457 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(1414450..1415457) Aggregatibacter aphrophilus NJ8700 8122099 YP_003007844.1 CDS NT05HA_1409 NC_012913.1 1415615 1416988 D identified by Glimmer3; putative; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 1415615..1416988 Aggregatibacter aphrophilus NJ8700 8122100 YP_003007846.1 CDS mltA NC_012913.1 1417363 1418481 D membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 1417363..1418481 Aggregatibacter aphrophilus NJ8700 8122102 YP_003007847.1 CDS NT05HA_1413 NC_012913.1 1418481 1419245 D identified by Glimmer3; putative; ThiF family protein 1418481..1419245 Aggregatibacter aphrophilus NJ8700 8122103 YP_003007848.1 CDS NT05HA_1414 NC_012913.1 1419357 1420367 D identified by Glimmer3; putative; high-affinity zinc uptake system protein ZnuA 1419357..1420367 Aggregatibacter aphrophilus NJ8700 8122104 YP_003007849.1 CDS NT05HA_1415 NC_012913.1 1420425 1422302 R identified by Glimmer3; putative; glutathione-regulated potassium-efflux system protein KefC complement(1420425..1422302) Aggregatibacter aphrophilus NJ8700 8122105 YP_003007850.1 CDS NT05HA_1416 NC_012913.1 1422415 1423227 D identified by Glimmer3; putative; 5'-nucleotidase 1422415..1423227 Aggregatibacter aphrophilus NJ8700 8122106 YP_003007851.1 CDS NT05HA_1417 NC_012913.1 1423212 1423400 D identified by Glimmer3; putative; hypothetical protein 1423212..1423400 Aggregatibacter aphrophilus NJ8700 8122107 YP_003007853.1 CDS NT05HA_1421 NC_012913.1 1429086 1429988 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(1429086..1429988) Aggregatibacter aphrophilus NJ8700 8122113 YP_003007854.1 CDS NT05HA_1422 NC_012913.1 1430007 1430300 R identified by Glimmer3; putative; hypothetical protein complement(1430007..1430300) Aggregatibacter aphrophilus NJ8700 8122114 YP_003007855.1 CDS NT05HA_1423 NC_012913.1 1430293 1430724 R identified by Glimmer3; putative; lipid transport protein complement(1430293..1430724) Aggregatibacter aphrophilus NJ8700 8122355 YP_003007856.1 CDS NT05HA_1424 NC_012913.1 1430799 1431215 D identified by Glimmer3; putative; integral membrane protein 1430799..1431215 Aggregatibacter aphrophilus NJ8700 8122356 YP_003007857.1 CDS NT05HA_1425 NC_012913.1 1431319 1432323 R identified by Glimmer3; putative; glyceraldehyde-3-phosphate dehydrogenase complement(1431319..1432323) Aggregatibacter aphrophilus NJ8700 8122357 YP_003007858.1 CDS gmk NC_012913.1 1432577 1433203 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 1432577..1433203 Aggregatibacter aphrophilus NJ8700 8122358 YP_003007859.1 CDS rpoZ NC_012913.1 1433266 1433532 D promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 1433266..1433532 Aggregatibacter aphrophilus NJ8700 8122359 YP_003007860.1 CDS NT05HA_1428 NC_012913.1 1433577 1435700 D identified by Glimmer3; putative; (ATP:GTP 3'-pyrophosphotransferase)(ppGpp synthetase I) ((P)ppGpp synthetase); GTP pyrophosphokinase 1433577..1435700 Aggregatibacter aphrophilus NJ8700 8122360 YP_003007861.1 CDS NT05HA_1429 NC_012913.1 1435700 1437781 D catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG 1435700..1437781 Aggregatibacter aphrophilus NJ8700 8122361 YP_003007862.1 CDS NT05HA_1430 NC_012913.1 1437774 1438277 D identified by Glimmer3; putative; chorismate--pyruvate lyase 1437774..1438277 Aggregatibacter aphrophilus NJ8700 8122362 YP_003007863.1 CDS NT05HA_1431 NC_012913.1 1438345 1439559 D identified by Glimmer3; putative; exodeoxyribonuclease VII large subunit 1438345..1439559 Aggregatibacter aphrophilus NJ8700 8122363 YP_003007864.1 CDS xseA NC_012913.1 1439543 1440883 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1439543..1440883 Aggregatibacter aphrophilus NJ8700 8122364 YP_003007865.1 CDS NT05HA_1433 NC_012913.1 1440888 1441742 R identified by Glimmer3; putative; ATPase complement(1440888..1441742) Aggregatibacter aphrophilus NJ8700 8122365 YP_003007866.1 CDS NT05HA_1434 NC_012913.1 1441764 1442291 R identified by Glimmer3; putative; hypothetical protein complement(1441764..1442291) Aggregatibacter aphrophilus NJ8700 8122366 YP_003007867.1 CDS NT05HA_1435 NC_012913.1 1442295 1443020 R identified by Glimmer3; putative; ABC transporter ATP-binding protein complement(1442295..1443020) Aggregatibacter aphrophilus NJ8700 8122367 YP_003007868.1 CDS NT05HA_1436 NC_012913.1 1443029 1443550 R identified by Glimmer3; putative; lipopolysaccharide transport periplasmic protein LptA complement(1443029..1443550) Aggregatibacter aphrophilus NJ8700 8122368 YP_003007869.1 CDS NT05HA_1437 NC_012913.1 1443531 1444115 R identified by Glimmer3; putative; hypothetical protein complement(1443531..1444115) Aggregatibacter aphrophilus NJ8700 8122369 YP_003007870.1 CDS NT05HA_1438 NC_012913.1 1444169 1445143 D identified by Glimmer3; putative; ABC transporter ATPase 1444169..1445143 Aggregatibacter aphrophilus NJ8700 8122370 YP_003007871.1 CDS NT05HA_1439 NC_012913.1 1445137 1445922 D identified by Glimmer3; putative; ABC transporter permease 1445137..1445922 Aggregatibacter aphrophilus NJ8700 8122371 YP_003007872.1 CDS NT05HA_1440 NC_012913.1 1445945 1446454 D identified by Glimmer3; putative; ABC transporter substrate-binding protein 1445945..1446454 Aggregatibacter aphrophilus NJ8700 8122372 YP_003007873.1 CDS NT05HA_1441 NC_012913.1 1446482 1447123 D identified by Glimmer3; putative; ABC transporter 1446482..1447123 Aggregatibacter aphrophilus NJ8700 8122373 YP_003007874.1 CDS NT05HA_1442 NC_012913.1 1447127 1447486 D identified by Glimmer3; putative; hypothetical protein 1447127..1447486 Aggregatibacter aphrophilus NJ8700 8122374 YP_003007875.1 CDS NT05HA_1443 NC_012913.1 1447486 1447743 D identified by Glimmer3; putative; BolA protein 1447486..1447743 Aggregatibacter aphrophilus NJ8700 8122375 YP_003007876.1 CDS NT05HA_1444 NC_012913.1 1447763 1449040 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1447763..1449040 Aggregatibacter aphrophilus NJ8700 8122376 YP_003007877.1 CDS NT05HA_1445 NC_012913.1 1449115 1449648 R identified by Glimmer3; putative; similar to Plu4061; hypothetical protein complement(1449115..1449648) Aggregatibacter aphrophilus NJ8700 8122377 YP_003007878.1 CDS NT05HA_1446 NC_012913.1 1449768 1451129 D identified by Glimmer3; putative; PmbA protein 1449768..1451129 Aggregatibacter aphrophilus NJ8700 8122378 YP_003007879.1 CDS NT05HA_1447 NC_012913.1 1451413 1451913 D identified by Glimmer3; putative; hypoxanthine phosphoribosyltransferase 1451413..1451913 Aggregatibacter aphrophilus NJ8700 8122379 YP_003007880.1 CDS NT05HA_1448 NC_012913.1 1451988 1453127 R identified by Glimmer3; putative; glycerate kinase complement(1451988..1453127) Aggregatibacter aphrophilus NJ8700 8122380 YP_003007881.1 CDS NT05HA_1449 NC_012913.1 1453152 1454408 R identified by Glimmer3; putative; transporter, gluconate:H+ symporter complement(1453152..1454408) Aggregatibacter aphrophilus NJ8700 8122381 YP_003007882.1 CDS NT05HA_1450 NC_012913.1 1454534 1455637 R identified by Glimmer3; putative; carbohydrate diacid regulator complement(1454534..1455637) Aggregatibacter aphrophilus NJ8700 8122382 YP_003007883.1 CDS NT05HA_1451 NC_012913.1 1455895 1457004 D identified by Glimmer3; putative; hypothetical protein 1455895..1457004 Aggregatibacter aphrophilus NJ8700 8122383 YP_003007884.1 CDS NT05HA_1454 NC_012913.1 1458354 1458467 D identified by Glimmer3; putative; hypothetical protein 1458354..1458467 Aggregatibacter aphrophilus NJ8700 8122385 YP_003007885.1 CDS NT05HA_1455 NC_012913.1 1458724 1460424 D identified by Glimmer3; putative; ABC transporter ATP-binding protein/permease 1458724..1460424 Aggregatibacter aphrophilus NJ8700 8122386 YP_003007886.1 CDS NT05HA_1456 NC_012913.1 1460465 1462552 D identified by Glimmer3; putative; hypothetical protein 1460465..1462552 Aggregatibacter aphrophilus NJ8700 8122387 YP_003007887.1 CDS NT05HA_1457 NC_012913.1 1462407 1462883 D identified by Glimmer3; putative; udp-glucose 6-dehydrogenase 1462407..1462883 Aggregatibacter aphrophilus NJ8700 8122388 YP_003007888.1 CDS NT05HA_1458 NC_012913.1 1462968 1464770 R identified by Glimmer3; putative; cold-shock deAd box protein a complement(1462968..1464770) Aggregatibacter aphrophilus NJ8700 8122389 YP_003007889.1 CDS NT05HA_1459 NC_012913.1 1464876 1465844 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI complement(1464876..1465844) Aggregatibacter aphrophilus NJ8700 8122390 YP_003007890.1 CDS NT05HA_1460 NC_012913.1 1465869 1467998 R identified by Glimmer3; putative; polynucleotide phosphorylase/polyadenylase complement(1465869..1467998) Aggregatibacter aphrophilus NJ8700 8122391 YP_003007891.1 CDS NT05HA_1461 NC_012913.1 1468268 1468738 D identified by Glimmer3; putative; EbgC protein 1468268..1468738 Aggregatibacter aphrophilus NJ8700 8122392 YP_003007892.1 CDS NT05HA_1462 NC_012913.1 1469210 1469764 R identified by Glimmer3; putative; N-acetyl-anhydromuranmyl-L-alanine amidase complement(1469210..1469764) Aggregatibacter aphrophilus NJ8700 8122393 YP_003007893.1 CDS NT05HA_1463 NC_012913.1 1469761 1469877 R identified by Glimmer3; putative; hypothetical protein complement(1469761..1469877) Aggregatibacter aphrophilus NJ8700 8122394 YP_003007894.1 CDS NT05HA_1464 NC_012913.1 1469889 1470338 D identified by Glimmer3; putative; PilA 1469889..1470338 Aggregatibacter aphrophilus NJ8700 8122395 YP_003007895.1 CDS NT05HA_1465 NC_012913.1 1470363 1471772 D identified by Glimmer3; putative; type IV pilus assembly protein 1470363..1471772 Aggregatibacter aphrophilus NJ8700 8122396 YP_003007896.1 CDS NT05HA_1466 NC_012913.1 1471765 1473003 D identified by Glimmer3; putative; PilC 1471765..1473003 Aggregatibacter aphrophilus NJ8700 8122397 YP_003007897.1 CDS NT05HA_1467 NC_012913.1 1473000 1473692 D identified by Glimmer3; putative; HopD 1473000..1473692 Aggregatibacter aphrophilus NJ8700 8122398 YP_003007898.1 CDS coaE NC_012913.1 1473745 1474365 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1473745..1474365 Aggregatibacter aphrophilus NJ8700 8122399 YP_003007899.1 CDS NT05HA_1469 NC_012913.1 1474358 1474570 D identified by Glimmer3; putative; zinc-binding protein 1474358..1474570 Aggregatibacter aphrophilus NJ8700 8122400 YP_003007900.1 CDS NT05HA_1470 NC_012913.1 1474570 1474836 D identified by Glimmer3; putative; acetyltransferase 1474570..1474836 Aggregatibacter aphrophilus NJ8700 8122401 YP_003007901.1 CDS NT05HA_1471 NC_012913.1 1475203 1476576 D identified by Glimmer3; putative; AlsT protein 1475203..1476576 Aggregatibacter aphrophilus NJ8700 8122402 YP_003007902.1 CDS NT05HA_1472 NC_012913.1 1476563 1476688 D identified by Glimmer3; putative; hypothetical protein 1476563..1476688 Aggregatibacter aphrophilus NJ8700 8122403 YP_003007903.1 CDS NT05HA_1475 NC_012913.1 1477465 1479714 D identified by Glimmer3; putative; nitric oxide reductase large subunit 1477465..1479714 Aggregatibacter aphrophilus NJ8700 8122405 YP_003007904.1 CDS NT05HA_1476 NC_012913.1 1479893 1480456 D identified by Glimmer3; putative; naphthoate synthase 1479893..1480456 Aggregatibacter aphrophilus NJ8700 8122406 YP_003007905.1 CDS NT05HA_1477 NC_012913.1 1480548 1481405 D identified by Glimmer3; putative; Ser/Thr protein phosphatase family protein 1480548..1481405 Aggregatibacter aphrophilus NJ8700 8122407 YP_003007906.1 CDS NT05HA_1478 NC_012913.1 1481730 1482233 R identified by Glimmer3; putative; hypothetical protein complement(1481730..1482233) Aggregatibacter aphrophilus NJ8700 8122408 YP_003007907.1 CDS NT05HA_1479 NC_012913.1 1482284 1482916 R identified by Glimmer3; putative; hypothetical protein complement(1482284..1482916) Aggregatibacter aphrophilus NJ8700 8122409 YP_003007908.1 CDS NT05HA_1480 NC_012913.1 1482966 1486859 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(1482966..1486859) Aggregatibacter aphrophilus NJ8700 8122410 YP_003007909.1 CDS fis NC_012913.1 1487148 1487444 R Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis complement(1487148..1487444) Aggregatibacter aphrophilus NJ8700 8122411 YP_003007910.1 CDS NT05HA_1482 NC_012913.1 1487460 1488422 R identified by Glimmer3; putative; tRNA-dihydrouridine synthase B complement(1487460..1488422) Aggregatibacter aphrophilus NJ8700 8122412 YP_003007911.1 CDS NT05HA_1483 NC_012913.1 1488719 1489603 R identified by Glimmer3; putative; ribosomal protein L11 methyltransferase complement(1488719..1489603) Aggregatibacter aphrophilus NJ8700 8122413 YP_003007912.1 CDS panF NC_012913.1 1489623 1491053 R mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter complement(1489623..1491053) Aggregatibacter aphrophilus NJ8700 8122414 YP_003007913.1 CDS NT05HA_1485 NC_012913.1 1491050 1491325 R identified by Glimmer3; putative; acetyl-CoA carboxylase biotin carboxylase subunit complement(1491050..1491325) Aggregatibacter aphrophilus NJ8700 8122415 YP_003007914.1 CDS NT05HA_1486 NC_012913.1 1491349 1492746 R identified by Glimmer3; putative; chromosomal replication initiation protein complement(1491349..1492746) Aggregatibacter aphrophilus NJ8700 8122416 YP_003007915.1 CDS NT05HA_1487 NC_012913.1 1492923 1493714 R identified by Glimmer3; putative; putative deoxyribonuclease YjjV complement(1492923..1493714) Aggregatibacter aphrophilus NJ8700 8122417 YP_003007916.1 CDS NT05HA_1488 NC_012913.1 1493755 1494267 R identified by Glimmer3; putative; peptidyl-prolyl cis-trans isomerase B complement(1493755..1494267) Aggregatibacter aphrophilus NJ8700 8122418 YP_003007917.1 CDS cysS NC_012913.1 1494366 1495745 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 1494366..1495745 Aggregatibacter aphrophilus NJ8700 8122419 YP_003007918.1 CDS NT05HA_1490 NC_012913.1 1495884 1496846 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(1495884..1496846) Aggregatibacter aphrophilus NJ8700 8122420 YP_003007919.1 CDS NT05HA_1491 NC_012913.1 1496913 1497551 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(1496913..1497551) Aggregatibacter aphrophilus NJ8700 8122421 YP_003007920.1 CDS NT05HA_1492 NC_012913.1 1497597 1497899 R identified by Glimmer3; putative; hypothetical protein complement(1497597..1497899) Aggregatibacter aphrophilus NJ8700 8122422 YP_003007921.1 CDS NT05HA_1495 NC_012913.1 1499187 1500071 R identified by Glimmer3; putative; lipoprotein complement(1499187..1500071) Aggregatibacter aphrophilus NJ8700 8122424 YP_003007922.1 CDS NT05HA_1496 NC_012913.1 1500120 1501235 R identified by Glimmer3; putative; rod shape-determining protein RodA complement(1500120..1501235) Aggregatibacter aphrophilus NJ8700 8122425 YP_003007923.1 CDS NT05HA_1497 NC_012913.1 1501228 1503177 R identified by Glimmer3; putative; penicillin-binding protein 2 complement(1501228..1503177) Aggregatibacter aphrophilus NJ8700 8122426 YP_003007924.1 CDS NT05HA_1498 NC_012913.1 1503177 1503644 R SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase complement(1503177..1503644) Aggregatibacter aphrophilus NJ8700 8122427 YP_003007925.1 CDS NT05HA_1499 NC_012913.1 1503694 1504002 R identified by Glimmer3; putative; iojap-like protein complement(1503694..1504002) Aggregatibacter aphrophilus NJ8700 8122428 YP_003007926.1 CDS NT05HA_1500 NC_012913.1 1504074 1505375 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB complement(1504074..1505375) Aggregatibacter aphrophilus NJ8700 8122429 YP_003007927.1 CDS rho NC_012913.1 1505635 1506897 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1505635..1506897 Aggregatibacter aphrophilus NJ8700 8122430 YP_003007928.1 CDS NT05HA_1502 NC_012913.1 1507029 1508255 R identified by Glimmer3; putative; transporter protein complement(1507029..1508255) Aggregatibacter aphrophilus NJ8700 8122431 YP_003007929.1 CDS acpP NC_012913.1 1508488 1508718 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(1508488..1508718) Aggregatibacter aphrophilus NJ8700 8122432 YP_003007930.1 CDS fabG NC_012913.1 1508988 1509716 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(1508988..1509716) Aggregatibacter aphrophilus NJ8700 8122433 YP_003007931.1 CDS NT05HA_1505 NC_012913.1 1509739 1510677 R identified by Glimmer3; putative; malonyl CoA-acyl carrier protein transacylase complement(1509739..1510677) Aggregatibacter aphrophilus NJ8700 8122434 YP_003007932.1 CDS NT05HA_1506 NC_012913.1 1510784 1511734 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III complement(1510784..1511734) Aggregatibacter aphrophilus NJ8700 8121635 YP_003007933.1 CDS NT05HA_1507 NC_012913.1 1511770 1512804 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX complement(1511770..1512804) Aggregatibacter aphrophilus NJ8700 8121636 YP_003007934.1 CDS rpmF NC_012913.1 1512831 1513001 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(1512831..1513001) Aggregatibacter aphrophilus NJ8700 8121637 YP_003007935.1 CDS NT05HA_1509 NC_012913.1 1513018 1513542 R identified by Glimmer3; putative; hypothetical protein complement(1513018..1513542) Aggregatibacter aphrophilus NJ8700 8121638 YP_003007936.1 CDS NT05HA_1510 NC_012913.1 1513614 1514255 R identified by Glimmer3; putative; dethiobiotin synthase complement(1513614..1514255) Aggregatibacter aphrophilus NJ8700 8121639 YP_003007937.1 CDS NT05HA_1511 NC_012913.1 1514255 1515019 R identified by Glimmer3; putative; biotin biosynthesis protein BioC complement(1514255..1515019) Aggregatibacter aphrophilus NJ8700 8121640 YP_003007938.1 CDS NT05HA_1512 NC_012913.1 1515010 1515663 R identified by Glimmer3; putative; dithiobiotin synthetase complement(1515010..1515663) Aggregatibacter aphrophilus NJ8700 8121641 YP_003007939.1 CDS NT05HA_1513 NC_012913.1 1515648 1516820 R identified by Glimmer3; putative; (aons) (8-amino-7-ketopelargonate synthase) (7-keto-8-amino-pelargonic acid synthetase)(7-kap synthetase) (l-alanine--pimelyl coa ligase); 8-amino-7-oxononanoate synthase complement(1515648..1516820) Aggregatibacter aphrophilus NJ8700 8121642 YP_003007940.1 CDS NT05HA_1514 NC_012913.1 1516813 1518102 R catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine--8-amino-7-oxononanoate transaminase complement(1516813..1518102) Aggregatibacter aphrophilus NJ8700 8121643 YP_003007941.1 CDS NT05HA_1515 NC_012913.1 1518445 1519206 R identified by Glimmer3; putative; biotin biosynthesis protein BioC complement(1518445..1519206) Aggregatibacter aphrophilus NJ8700 8121644 YP_003007942.1 CDS NT05HA_1516 NC_012913.1 1519423 1519788 R identified by Glimmer3; putative; hypothetical protein complement(1519423..1519788) Aggregatibacter aphrophilus NJ8700 8121645 YP_003007943.1 CDS NT05HA_1517 NC_012913.1 1519817 1521112 R identified by Glimmer3; putative; dual specificity protein phosphatase complement(1519817..1521112) Aggregatibacter aphrophilus NJ8700 8121646 YP_003007944.1 CDS NT05HA_1518 NC_012913.1 1521114 1522898 R identified by Glimmer3; putative; lysophospholipase complement(1521114..1522898) Aggregatibacter aphrophilus NJ8700 8121647 YP_003007945.1 CDS psd NC_012913.1 1523097 1523966 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 1523097..1523966 Aggregatibacter aphrophilus NJ8700 8121648 YP_003007946.1 CDS NT05HA_1520 NC_012913.1 1523992 1524624 D identified by Glimmer3; putative; fkbp-type peptidyl-prolyl cis-trans isomerase fkpa 1523992..1524624 Aggregatibacter aphrophilus NJ8700 8121649 YP_003007947.1 CDS NT05HA_1521 NC_012913.1 1524685 1525791 R catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase complement(1524685..1525791) Aggregatibacter aphrophilus NJ8700 8121650 YP_003007948.1 CDS NT05HA_1522 NC_012913.1 1525955 1526740 D identified by Glimmer3; putative; YjjP 1525955..1526740 Aggregatibacter aphrophilus NJ8700 8121651 YP_003007949.1 CDS NT05HA_1523 NC_012913.1 1526742 1527206 D identified by Glimmer3; putative; YjjB 1526742..1527206 Aggregatibacter aphrophilus NJ8700 8121652 YP_003007950.1 CDS NT05HA_1524 NC_012913.1 1527246 1527731 D identified by Glimmer3; putative; dihydrofolate reductase 1527246..1527731 Aggregatibacter aphrophilus NJ8700 8121653 YP_003007951.1 CDS NT05HA_1525 NC_012913.1 1527952 1529328 R identified by Glimmer3; putative; inner membrane protein YtfL complement(1527952..1529328) Aggregatibacter aphrophilus NJ8700 8121654 YP_003007952.1 CDS NT05HA_1526 NC_012913.1 1529350 1529877 R identified by Glimmer3; putative; hypothetical protein complement(1529350..1529877) Aggregatibacter aphrophilus NJ8700 8121655 YP_003007953.1 CDS NT05HA_1527 NC_012913.1 1529906 1530688 R identified by Glimmer3; putative; TatD family hydrolase complement(1529906..1530688) Aggregatibacter aphrophilus NJ8700 8121656 YP_003007954.1 CDS NT05HA_1528 NC_012913.1 1530692 1531762 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(1530692..1531762) Aggregatibacter aphrophilus NJ8700 8121657 YP_003007955.1 CDS tmk NC_012913.1 1531759 1532391 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(1531759..1532391) Aggregatibacter aphrophilus NJ8700 8121658 YP_003007956.1 CDS NT05HA_1530 NC_012913.1 1532393 1532995 R identified by Glimmer3; putative; hypothetical protein complement(1532393..1532995) Aggregatibacter aphrophilus NJ8700 8121659 YP_003007957.1 CDS NT05HA_1531 NC_012913.1 1532958 1533440 R identified by Glimmer3; putative; pyrimidine regulatory protein PyrR complement(1532958..1533440) Aggregatibacter aphrophilus NJ8700 8121660 YP_003007958.1 CDS NT05HA_1532 NC_012913.1 1533552 1534607 R identified by Glimmer3; putative; PerM protein complement(1533552..1534607) Aggregatibacter aphrophilus NJ8700 8121661 YP_003007959.1 CDS NT05HA_1533 NC_012913.1 1534611 1534994 R identified by Glimmer3; putative; nitrogen regulatory protein P-II complement(1534611..1534994) Aggregatibacter aphrophilus NJ8700 8121662 YP_003007960.1 CDS NT05HA_1534 NC_012913.1 1534991 1535122 R identified by Glimmer3; putative; hypothetical protein complement(1534991..1535122) Aggregatibacter aphrophilus NJ8700 8121663 YP_003007961.1 CDS NT05HA_1535 NC_012913.1 1535161 1535979 D identified by Glimmer3; putative; phosphatase YbhA 1535161..1535979 Aggregatibacter aphrophilus NJ8700 8121664 YP_003007962.1 CDS NT05HA_1536 NC_012913.1 1536109 1537275 R identified by Glimmer3; putative; Sel1 complement(1536109..1537275) Aggregatibacter aphrophilus NJ8700 8121665 YP_003007963.1 CDS NT05HA_1537 NC_012913.1 1537281 1538306 R identified by Glimmer3; putative; phospholipase D/Transphosphatidylase complement(1537281..1538306) Aggregatibacter aphrophilus NJ8700 8121666 YP_003007964.1 CDS NT05HA_1538 NC_012913.1 1538596 1539498 R identified by Glimmer3; putative; hypothetical protein complement(1538596..1539498) Aggregatibacter aphrophilus NJ8700 8121667 YP_003007965.1 CDS NT05HA_1539 NC_012913.1 1539480 1539668 R identified by Glimmer3; putative; hypothetical protein complement(1539480..1539668) Aggregatibacter aphrophilus NJ8700 8121668 YP_003007966.1 CDS NT05HA_1542 NC_012913.1 1541857 1542438 R identified by Glimmer3; putative; molybdopterin biosynthesis mog protein complement(1541857..1542438) Aggregatibacter aphrophilus NJ8700 8121670 YP_003007967.1 CDS NT05HA_1543 NC_012913.1 1542513 1543442 R identified by Glimmer3; putative; phosphatidate cytidylyltransferase complement(1542513..1543442) Aggregatibacter aphrophilus NJ8700 8121671 YP_003007968.1 CDS NT05HA_1544 NC_012913.1 1543442 1544074 R identified by Glimmer3; putative; acyltransferase complement(1543442..1544074) Aggregatibacter aphrophilus NJ8700 8121672 YP_003007969.1 CDS NT05HA_1545 NC_012913.1 1544085 1544693 R identified by Glimmer3; putative; CDP-alcohol phosphatidyltransferase complement(1544085..1544693) Aggregatibacter aphrophilus NJ8700 8121673 YP_003007970.1 CDS NT05HA_1546 NC_012913.1 1544711 1546573 R identified by Glimmer3; putative; CitT protein complement(1544711..1546573) Aggregatibacter aphrophilus NJ8700 8121674 YP_003007971.1 CDS NT05HA_1547 NC_012913.1 1546624 1547211 R identified by Glimmer3; putative; ribonuclease HII complement(1546624..1547211) Aggregatibacter aphrophilus NJ8700 8121675 YP_003007972.1 CDS lpxB NC_012913.1 1547204 1548388 R catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase complement(1547204..1548388) Aggregatibacter aphrophilus NJ8700 8121676 YP_003007973.1 CDS NT05HA_1549 NC_012913.1 1548470 1549258 R identified by Glimmer3; putative; acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase complement(1548470..1549258) Aggregatibacter aphrophilus NJ8700 8121677 YP_003007974.1 CDS NT05HA_1550 NC_012913.1 1549296 1549748 R identified by Glimmer3; putative; 3-hydroxyacyl-ACP dehydratase complement(1549296..1549748) Aggregatibacter aphrophilus NJ8700 8121678 YP_003007975.1 CDS lpxD NC_012913.1 1549842 1550864 R adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase complement(1549842..1550864) Aggregatibacter aphrophilus NJ8700 8121679 YP_003007976.1 CDS NT05HA_1552 NC_012913.1 1550864 1551442 R identified by Glimmer3; putative; outer membrane protein 26 complement(1550864..1551442) Aggregatibacter aphrophilus NJ8700 8121680 YP_003007977.1 CDS NT05HA_1553 NC_012913.1 1551546 1553945 R identified by Glimmer3; putative; outer membrane protein assembly complex, YaeT protein complement(1551546..1553945) Aggregatibacter aphrophilus NJ8700 8121681 YP_003007978.1 CDS NT05HA_1554 NC_012913.1 1553980 1555311 R identified by Glimmer3; putative; RIP metalloprotease RseP complement(1553980..1555311) Aggregatibacter aphrophilus NJ8700 8121682 YP_003007979.1 CDS NT05HA_1555 NC_012913.1 1555321 1556190 R identified by Glimmer3; putative; phosphatidate cytidylyltransferase complement(1555321..1556190) Aggregatibacter aphrophilus NJ8700 8121683 YP_003007980.1 CDS NT05HA_1556 NC_012913.1 1556205 1556924 R identified by Glimmer3; putative; di-trans,poly-cis-decaprenylcistransferase complement(1556205..1556924) Aggregatibacter aphrophilus NJ8700 8121684 YP_003007981.1 CDS NT05HA_1558 NC_012913.1 1556945 1558150 R catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase complement(1556945..1558150) Aggregatibacter aphrophilus NJ8700 8121685 YP_003007982.1 CDS NT05HA_1557 NC_012913.1 1558136 1558252 D identified by Glimmer3; putative; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1558136..1558252 Aggregatibacter aphrophilus NJ8700 8121686 YP_003007983.1 CDS NT05HA_1559 NC_012913.1 1558267 1558824 R identified by Glimmer3; putative; ribosome recycling factor complement(1558267..1558824) Aggregatibacter aphrophilus NJ8700 8121687 YP_003007984.1 CDS pyrH NC_012913.1 1559034 1559747 R Catalyzes the phosphorylation of UMP to UDP; uridylate kinase complement(1559034..1559747) Aggregatibacter aphrophilus NJ8700 8121688 YP_003007985.1 CDS NT05HA_1561 NC_012913.1 1559905 1561563 R identified by Glimmer3; putative; hypothetical protein complement(1559905..1561563) Aggregatibacter aphrophilus NJ8700 8121689 YP_003007986.1 CDS NT05HA_1562 NC_012913.1 1561721 1563505 D identified by Glimmer3; putative; hypothetical protein 1561721..1563505 Aggregatibacter aphrophilus NJ8700 8121690 YP_003007987.1 CDS NT05HA_1563 NC_012913.1 1563502 1563654 R identified by Glimmer3; putative; exonuclease III complement(1563502..1563654) Aggregatibacter aphrophilus NJ8700 8121691 YP_003007988.1 CDS NT05HA_1564 NC_012913.1 1564015 1565562 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 1564015..1565562 Aggregatibacter aphrophilus NJ8700 8121692 YP_003007989.1 CDS NT05HA_1565 NC_012913.1 1565664 1566740 D catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase 1565664..1566740 Aggregatibacter aphrophilus NJ8700 8121693 YP_003007990.1 CDS NT05HA_1566 NC_012913.1 1566892 1568349 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 1566892..1568349 Aggregatibacter aphrophilus NJ8700 8121694 YP_003007991.1 CDS leuD NC_012913.1 1568374 1568976 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 1568374..1568976 Aggregatibacter aphrophilus NJ8700 8121695 YP_003007992.1 CDS NT05HA_1568 NC_012913.1 1569031 1569189 D identified by Glimmer3; putative; SmtA protein 1569031..1569189 Aggregatibacter aphrophilus NJ8700 8121696 YP_003007993.1 CDS NT05HA_1569 NC_012913.1 1569157 1569909 R identified by Glimmer3; putative; hypothetical protein complement(1569157..1569909) Aggregatibacter aphrophilus NJ8700 8121697 YP_003007994.1 CDS NT05HA_1570 NC_012913.1 1569911 1571155 R identified by Glimmer3; putative; Low affinity tryptophan permease complement(1569911..1571155) Aggregatibacter aphrophilus NJ8700 8121698 YP_003007995.1 CDS NT05HA_1571 NC_012913.1 1571310 1571837 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 1571310..1571837 Aggregatibacter aphrophilus NJ8700 8121699 YP_003007996.1 CDS NT05HA_1572 NC_012913.1 1571915 1572688 D identified by Glimmer3; putative; HtpX protein 1571915..1572688 Aggregatibacter aphrophilus NJ8700 8121700 YP_003007997.1 CDS NT05HA_1573 NC_012913.1 1572789 1573547 R identified by Glimmer3; putative; protein TonB complement(1572789..1573547) Aggregatibacter aphrophilus NJ8700 8121701 YP_003007998.1 CDS NT05HA_1574 NC_012913.1 1573558 1574034 R identified by Glimmer3; putative; TonB system transport protein ExbD complement(1573558..1574034) Aggregatibacter aphrophilus NJ8700 8121702 YP_003007999.1 CDS NT05HA_1575 NC_012913.1 1574038 1574508 R identified by Glimmer3; putative; TonB-system energizer ExbB complement(1574038..1574508) Aggregatibacter aphrophilus NJ8700 8121703 YP_003008000.1 CDS NT05HA_1576 NC_012913.1 1574693 1575955 R identified by Glimmer3; putative; hemolysin complement(1574693..1575955) Aggregatibacter aphrophilus NJ8700 8121704 YP_003008001.1 CDS NT05HA_1577 NC_012913.1 1576031 1576825 R identified by Glimmer3; putative; CcmC protein complement(1576031..1576825) Aggregatibacter aphrophilus NJ8700 8121705 YP_003008002.1 CDS NT05HA_1578 NC_012913.1 1576980 1578359 D identified by Glimmer3; putative; signal recognition particle protein 1576980..1578359 Aggregatibacter aphrophilus NJ8700 8121706 YP_003008003.1 CDS NT05HA_1579 NC_012913.1 1578446 1579147 D identified by Glimmer3; putative; lipoprotein 1578446..1579147 Aggregatibacter aphrophilus NJ8700 8121707 YP_003008004.1 CDS NT05HA_1580 NC_012913.1 1579207 1581648 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(1579207..1581648) Aggregatibacter aphrophilus NJ8700 8121708 YP_003008005.1 CDS NT05HA_1581 NC_012913.1 1581859 1582485 D Represses a number of genes involved in the response to DNA damage; LexA repressor 1581859..1582485 Aggregatibacter aphrophilus NJ8700 8121709 YP_003008006.1 CDS rpsF NC_012913.1 1582638 1583015 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 1582638..1583015 Aggregatibacter aphrophilus NJ8700 8121710 YP_003008007.1 CDS NT05HA_1583 NC_012913.1 1583017 1583328 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 1583017..1583328 Aggregatibacter aphrophilus NJ8700 8121711 YP_003008008.1 CDS NT05HA_1584 NC_012913.1 1583341 1583571 D identified by Glimmer3; putative; 30S ribosomal protein S18 1583341..1583571 Aggregatibacter aphrophilus NJ8700 8121712 YP_003008009.1 CDS NT05HA_1585 NC_012913.1 1583587 1584036 D identified by Glimmer3; putative; 50S ribosomal protein L9 1583587..1584036 Aggregatibacter aphrophilus NJ8700 8121713 YP_003008010.1 CDS NT05HA_1586 NC_012913.1 1584293 1585408 D identified by Glimmer3; putative; DNA-processing chain A 1584293..1585408 Aggregatibacter aphrophilus NJ8700 8121714 YP_003008011.1 CDS rpsL NC_012913.1 1585894 1586268 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 1585894..1586268 Aggregatibacter aphrophilus NJ8700 8122983 YP_003008012.1 CDS NT05HA_1588 NC_012913.1 1586422 1586892 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 1586422..1586892 Aggregatibacter aphrophilus NJ8700 8122984 YP_003008013.1 CDS NT05HA_1589 NC_012913.1 1587009 1589111 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 1587009..1589111 Aggregatibacter aphrophilus NJ8700 8122985 YP_003008014.1 CDS NT05HA_1590 NC_012913.1 1589175 1590359 D identified by Glimmer3; putative; translation elongation factor Tu 1589175..1590359 Aggregatibacter aphrophilus NJ8700 8122986 YP_003008015.1 CDS NT05HA_1591 NC_012913.1 1590523 1592838 R identified by Glimmer3; putative; protein YhgF complement(1590523..1592838) Aggregatibacter aphrophilus NJ8700 8122987 YP_003008016.1 CDS greB NC_012913.1 1592953 1593432 D necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB 1592953..1593432 Aggregatibacter aphrophilus NJ8700 8122988 YP_003008017.1 CDS NT05HA_1593 NC_012913.1 1593473 1593661 R identified by Glimmer3; putative; hypothetical protein complement(1593473..1593661) Aggregatibacter aphrophilus NJ8700 8122989 YP_003008018.1 CDS NT05HA_1594 NC_012913.1 1593672 1594253 R Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor complement(1593672..1594253) Aggregatibacter aphrophilus NJ8700 8122990 YP_003008019.1 CDS NT05HA_1595 NC_012913.1 1594431 1594688 R identified by Glimmer3; putative; hypothetical protein complement(1594431..1594688) Aggregatibacter aphrophilus NJ8700 8122991 YP_003008020.1 CDS NT05HA_1596 NC_012913.1 1595066 1595794 D identified by Glimmer3; putative; hypothetical protein 1595066..1595794 Aggregatibacter aphrophilus NJ8700 8122992 YP_003008021.1 CDS NT05HA_1597 NC_012913.1 1595852 1597123 R identified by Glimmer3; putative; HemY protein complement(1595852..1597123) Aggregatibacter aphrophilus NJ8700 8122993 YP_003008022.1 CDS NT05HA_1598 NC_012913.1 1597136 1598521 R identified by Glimmer3; putative; HemX protein complement(1597136..1598521) Aggregatibacter aphrophilus NJ8700 8122994 YP_003008023.1 CDS NT05HA_1599 NC_012913.1 1598553 1599299 R identified by Glimmer3; putative; uroporphyrinogen-III synthase complement(1598553..1599299) Aggregatibacter aphrophilus NJ8700 8122995 YP_003008024.1 CDS hemC NC_012913.1 1599315 1600241 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(1599315..1600241) Aggregatibacter aphrophilus NJ8700 8122996 YP_003008025.1 CDS cyaA NC_012913.1 1600393 1602894 D catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase 1600393..1602894 Aggregatibacter aphrophilus NJ8700 8122997 YP_003008026.1 CDS NT05HA_1602 NC_012913.1 1602904 1603533 D identified by Glimmer3; putative; nitrate/nitrite response regulator protein NarP 1602904..1603533 Aggregatibacter aphrophilus NJ8700 8122998 YP_003008027.1 CDS NT05HA_1603 NC_012913.1 1603593 1605452 D identified by Glimmer3; putative; outer membrane protein 1603593..1605452 Aggregatibacter aphrophilus NJ8700 8122999 YP_003008028.1 CDS NT05HA_1604 NC_012913.1 1605474 1609376 D identified by Glimmer3; putative; hypothetical protein 1605474..1609376 Aggregatibacter aphrophilus NJ8700 8123000 YP_003008029.1 CDS NT05HA_1605 NC_012913.1 1609397 1610944 D identified by Glimmer3; putative; exopolyphosphatase 1609397..1610944 Aggregatibacter aphrophilus NJ8700 8123001 YP_003008030.1 CDS NT05HA_1606 NC_012913.1 1611014 1612630 R PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase complement(1611014..1612630) Aggregatibacter aphrophilus NJ8700 8123002 YP_003008031.1 CDS NT05HA_1607 NC_012913.1 1612840 1613484 D identified by Glimmer3; putative; hypothetical protein 1612840..1613484 Aggregatibacter aphrophilus NJ8700 8123003 YP_003008032.1 CDS mnmA NC_012913.1 1613590 1614744 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1613590..1614744) Aggregatibacter aphrophilus NJ8700 8123004 YP_003008033.1 CDS NT05HA_1609 NC_012913.1 1614865 1615122 R identified by Glimmer3; putative; hypothetical protein complement(1614865..1615122) Aggregatibacter aphrophilus NJ8700 8123005 YP_003008034.1 CDS NT05HA_1610 NC_012913.1 1615204 1616292 R identified by Glimmer3; putative; thiamine biosynthesis lipoprotein ApbE complement(1615204..1616292) Aggregatibacter aphrophilus NJ8700 8123006 YP_003008035.1 CDS NT05HA_1611 NC_012913.1 1616289 1616459 R identified by Glimmer3; putative; hypothetical protein complement(1616289..1616459) Aggregatibacter aphrophilus NJ8700 8123007 YP_003008036.1 CDS NT05HA_1612 NC_012913.1 1616443 1617678 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F complement(1616443..1617678) Aggregatibacter aphrophilus NJ8700 8123008 YP_003008037.1 CDS NT05HA_1613 NC_012913.1 1617690 1618286 R identified by Glimmer3; putative; NADH:ubiquinone oxidoreductase subunit E complement(1617690..1618286) Aggregatibacter aphrophilus NJ8700 8123009 YP_003008038.1 CDS NT05HA_1614 NC_012913.1 1618290 1618919 R identified by Glimmer3; putative; NADH:ubiquinone oxidoreductase subunit D complement(1618290..1618919) Aggregatibacter aphrophilus NJ8700 8123010 YP_003008039.1 CDS NT05HA_1615 NC_012913.1 1618919 1619704 R identified by Glimmer3; putative; NADH:ubiquinone oxidoreductase subunit C complement(1618919..1619704) Aggregatibacter aphrophilus NJ8700 8123011 YP_003008040.1 CDS NT05HA_1616 NC_012913.1 1619697 1620932 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B complement(1619697..1620932) Aggregatibacter aphrophilus NJ8700 8123012 YP_003008041.1 CDS NT05HA_1617 NC_012913.1 1620935 1622275 R uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A complement(1620935..1622275) Aggregatibacter aphrophilus NJ8700 8123013 YP_003008042.1 CDS NT05HA_1618 NC_012913.1 1622648 1622959 R identified by Glimmer3; putative; BolA protein complement(1622648..1622959) Aggregatibacter aphrophilus NJ8700 8123014 YP_003008043.1 CDS NT05HA_1619 NC_012913.1 1623061 1623654 D identified by Glimmer3; putative; hypothetical protein 1623061..1623654 Aggregatibacter aphrophilus NJ8700 8123015 YP_003008044.1 CDS NT05HA_1620 NC_012913.1 1623635 1623754 R identified by Glimmer3; putative; pyruvate formate lyase-activating enzyme 1 complement(1623635..1623754) Aggregatibacter aphrophilus NJ8700 8123016 YP_003008045.1 CDS mltC NC_012913.1 1624226 1625305 R Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C complement(1624226..1625305) Aggregatibacter aphrophilus NJ8700 8123019 YP_003008046.1 CDS NT05HA_1624 NC_012913.1 1625307 1625582 R identified by Glimmer3; putative; hypothetical protein complement(1625307..1625582) Aggregatibacter aphrophilus NJ8700 8123020 YP_003008047.1 CDS NT05HA_1625 NC_012913.1 1625560 1626699 R identified by Glimmer3; putative; A/G-specific adenine glycosylase complement(1625560..1626699) Aggregatibacter aphrophilus NJ8700 8123021 YP_003008048.1 CDS NT05HA_1626 NC_012913.1 1626714 1626830 R identified by Glimmer3; putative; hypothetical protein complement(1626714..1626830) Aggregatibacter aphrophilus NJ8700 8123022 YP_003008049.1 CDS NT05HA_1629 NC_012913.1 1627695 1628036 D identified by Glimmer3; putative; hypothetical protein 1627695..1628036 Aggregatibacter aphrophilus NJ8700 8123024 YP_003008050.1 CDS NT05HA_1630 NC_012913.1 1628154 1628822 R identified by Glimmer3; putative; ABC-type multidrug efflux pump complement(1628154..1628822) Aggregatibacter aphrophilus NJ8700 8123025 YP_003008051.1 CDS NT05HA_1631 NC_012913.1 1628813 1629997 R identified by Glimmer3; putative; MdlB protein complement(1628813..1629997) Aggregatibacter aphrophilus NJ8700 8123026 YP_003008052.1 CDS NT05HA_1632 NC_012913.1 1630078 1630986 R identified by Glimmer3; putative; MtrA complement(1630078..1630986) Aggregatibacter aphrophilus NJ8700 8123027 YP_003008053.1 CDS NT05HA_1633 NC_012913.1 1631100 1631438 D identified by Glimmer3; putative; alkylhydroperoxidase AhpD core 1631100..1631438 Aggregatibacter aphrophilus NJ8700 8123028 YP_003008054.1 CDS NT05HA_1634 NC_012913.1 1631544 1632590 R identified by Glimmer3; putative; lipopolysaccharide biosynthesis protein complement(1631544..1632590) Aggregatibacter aphrophilus NJ8700 8123029 YP_003008055.1 CDS NT05HA_1635 NC_012913.1 1632677 1633405 D catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase 1632677..1633405 Aggregatibacter aphrophilus NJ8700 8123030 YP_003008056.1 CDS NT05HA_1636 NC_012913.1 1633467 1633964 R identified by Glimmer3; putative; hypothetical protein complement(1633467..1633964) Aggregatibacter aphrophilus NJ8700 8123031 YP_003008057.1 CDS NT05HA_1637 NC_012913.1 1634004 1634615 D ORF-23; HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 1634004..1634615 Aggregatibacter aphrophilus NJ8700 8123032 YP_003008058.1 CDS NT05HA_1638 NC_012913.1 1634643 1636010 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 1634643..1636010 Aggregatibacter aphrophilus NJ8700 8123033 YP_003008059.1 CDS NT05HA_1639 NC_012913.1 1636102 1636236 R identified by Glimmer3; putative; hypothetical protein complement(1636102..1636236) Aggregatibacter aphrophilus NJ8700 8123034 YP_003008060.1 CDS NT05HA_1640 NC_012913.1 1636267 1637265 D identified by Glimmer3; putative; ferric iron binding protein 1636267..1637265 Aggregatibacter aphrophilus NJ8700 8123035 YP_003008061.1 CDS NT05HA_1641 NC_012913.1 1637286 1637408 R identified by Glimmer3; putative; hypothetical protein complement(1637286..1637408) Aggregatibacter aphrophilus NJ8700 8123036 YP_003008062.1 CDS NT05HA_1642 NC_012913.1 1637438 1637914 R identified by Glimmer3; putative; hypothetical protein complement(1637438..1637914) Aggregatibacter aphrophilus NJ8700 8123037 YP_003008063.1 CDS NT05HA_1643 NC_012913.1 1638004 1639233 R identified by Glimmer3; putative; RecF/RecN/SMC N domain complement(1638004..1639233) Aggregatibacter aphrophilus NJ8700 8123038 YP_003008064.1 CDS NT05HA_1644 NC_012913.1 1639513 1641033 D identified by Glimmer3; putative; iron(III)-transport system permease FbpB 2 1639513..1641033 Aggregatibacter aphrophilus NJ8700 8123039 YP_003008065.1 CDS NT05HA_1645 NC_012913.1 1641048 1642109 D identified by Glimmer3; putative; ferric cations import ATP-binding protein FbpC 1641048..1642109 Aggregatibacter aphrophilus NJ8700 8123040 YP_003008066.1 CDS NT05HA_1646 NC_012913.1 1642205 1643143 R identified by Glimmer3; putative; tRNA-dihydrouridine synthase C complement(1642205..1643143) Aggregatibacter aphrophilus NJ8700 8123041 YP_003008067.1 CDS djlA NC_012913.1 1643147 1644013 R functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein complement(1643147..1644013) Aggregatibacter aphrophilus NJ8700 8123042 YP_003008068.1 CDS pyrE NC_012913.1 1644101 1644742 R involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase complement(1644101..1644742) Aggregatibacter aphrophilus NJ8700 8123043 YP_003008069.1 CDS rph NC_012913.1 1644754 1645470 R RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH complement(1644754..1645470) Aggregatibacter aphrophilus NJ8700 8123044 YP_003008070.1 CDS NT05HA_1650 NC_012913.1 1645589 1646452 D identified by Glimmer3; putative; hypothetical protein 1645589..1646452 Aggregatibacter aphrophilus NJ8700 8123045 YP_003008071.1 CDS NT05HA_1651 NC_012913.1 1646480 1647367 D identified by Glimmer3; putative; D-3-phosphoglycerate dehydrogenase 1646480..1647367 Aggregatibacter aphrophilus NJ8700 8123046 YP_003008072.1 CDS NT05HA_1652 NC_012913.1 1647367 1648209 D identified by Glimmer3; putative; hypothetical protein 1647367..1648209 Aggregatibacter aphrophilus NJ8700 8123047 YP_003008073.1 CDS NT05HA_1653 NC_012913.1 1648414 1648899 R identified by Glimmer3; putative; calcium/calmodulin dependent protein kinase II complement(1648414..1648899) Aggregatibacter aphrophilus NJ8700 8123048 YP_003008074.1 CDS rpsB NC_012913.1 1649316 1650038 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1649316..1650038 Aggregatibacter aphrophilus NJ8700 8123049 YP_003008075.1 CDS tsf NC_012913.1 1650193 1651041 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1650193..1651041 Aggregatibacter aphrophilus NJ8700 8123050 YP_003008076.1 CDS NT05HA_1656 NC_012913.1 1651292 1651936 D identified by Glimmer3; putative; DNA repair protein RecO 1651292..1651936 Aggregatibacter aphrophilus NJ8700 8123051 YP_003008077.1 CDS rumA NC_012913.1 1651938 1653254 D in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase 1651938..1653254 Aggregatibacter aphrophilus NJ8700 8123052 YP_003008078.1 CDS NT05HA_1658 NC_012913.1 1653267 1655495 D identified by Glimmer3; putative; (ATP:GTP 3'-pyrophosphotransferase)(ppGpp synthetase I) ((P)ppGpp synthetase); GTP pyrophosphokinase 1653267..1655495 Aggregatibacter aphrophilus NJ8700 8123053 YP_003008079.1 CDS NT05HA_1659 NC_012913.1 1655524 1655880 D identified by Glimmer3; putative; diacylglycerol kinase 1655524..1655880 Aggregatibacter aphrophilus NJ8700 8123054 YP_003008080.1 CDS NT05HA_1660 NC_012913.1 1655993 1656616 D identified by Glimmer3; putative; HAD hydrolase 1655993..1656616 Aggregatibacter aphrophilus NJ8700 8123055 YP_003008081.1 CDS NT05HA_1661 NC_012913.1 1656670 1657329 D identified by Glimmer3; putative; hypothetical protein 1656670..1657329 Aggregatibacter aphrophilus NJ8700 8123056 YP_003008082.1 CDS NT05HA_1662 NC_012913.1 1657321 1657437 R identified by Glimmer3; putative; DNA alkylation repair protein complement(1657321..1657437) Aggregatibacter aphrophilus NJ8700 8123057 YP_003008083.1 CDS ftsX NC_012913.1 1657389 1658324 R putative ABC transporter, membrane protein; cell division protein FtsX complement(1657389..1658324) Aggregatibacter aphrophilus NJ8700 8123058 YP_003008084.1 CDS NT05HA_1664 NC_012913.1 1658333 1658983 R identified by Glimmer3; putative; cell division ATP-binding protein FtsE complement(1658333..1658983) Aggregatibacter aphrophilus NJ8700 8123059 YP_003008085.1 CDS NT05HA_1665 NC_012913.1 1659022 1660509 R identified by Glimmer3; putative; cell division protein FtsY complement(1659022..1660509) Aggregatibacter aphrophilus NJ8700 8123060 YP_003008086.1 CDS NT05HA_1666 NC_012913.1 1660525 1661112 D identified by Glimmer3; putative; putative methyltransferase 1660525..1661112 Aggregatibacter aphrophilus NJ8700 8123061 YP_003008087.1 CDS NT05HA_1667 NC_012913.1 1661376 1662356 D identified by Glimmer3; putative; PTS system mannose-specific transporter subunit IIAB 1661376..1662356 Aggregatibacter aphrophilus NJ8700 8123062 YP_003008088.1 CDS NT05HA_1668 NC_012913.1 1662372 1663169 D identified by Glimmer3; putative; (pts system fructose-specific eiiccomponent) (eiic-fru) (p28); fructose permease iic component 1662372..1663169 Aggregatibacter aphrophilus NJ8700 8122275 YP_003008089.1 CDS NT05HA_1669 NC_012913.1 1663181 1664017 D identified by Glimmer3; putative; (pts system mannose-specific eiidcomponent) (eiid-man) (eii-m-man); mannose permease iid component 1663181..1664017 Aggregatibacter aphrophilus NJ8700 8122276 YP_003008090.1 CDS NT05HA_1670 NC_012913.1 1664140 1665312 D identified by Glimmer3; putative; Cof protein 1664140..1665312 Aggregatibacter aphrophilus NJ8700 8122277 YP_003008091.1 CDS NT05HA_1671 NC_012913.1 1665375 1666007 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase complement(1665375..1666007) Aggregatibacter aphrophilus NJ8700 8122278 YP_003008092.1 CDS NT05HA_1672 NC_012913.1 1666210 1667535 D identified by Glimmer3; putative; regulatory protein UhpC 1666210..1667535 Aggregatibacter aphrophilus NJ8700 8122279 YP_003008093.1 CDS NT05HA_1673 NC_012913.1 1667568 1668308 R identified by Glimmer3; putative; ron chelate uptake ABC transporter ATP-binding protein complement(1667568..1668308) Aggregatibacter aphrophilus NJ8700 8122280 YP_003008094.1 CDS NT05HA_1674 NC_012913.1 1668314 1669327 R identified by Glimmer3; putative; FecCD family ABC transporter permease complement(1668314..1669327) Aggregatibacter aphrophilus NJ8700 8122281 YP_003008095.1 CDS NT05HA_1675 NC_012913.1 1669327 1670331 R identified by Glimmer3; putative; iron ABC transporter solute-binding protein complement(1669327..1670331) Aggregatibacter aphrophilus NJ8700 8122282 YP_003008096.1 CDS NT05HA_1676 NC_012913.1 1670518 1670988 D identified by Glimmer3; putative; hypothetical protein 1670518..1670988 Aggregatibacter aphrophilus NJ8700 8122283 YP_003008097.1 CDS NT05HA_1677 NC_012913.1 1670990 1672987 D identified by Glimmer3; putative; TonB-dependent receptor 1670990..1672987 Aggregatibacter aphrophilus NJ8700 8122284 YP_003008098.1 CDS NT05HA_1678 NC_012913.1 1673051 1673344 R identified by Glimmer3; putative; HmsD complement(1673051..1673344) Aggregatibacter aphrophilus NJ8700 8122285 YP_003008099.1 CDS NT05HA_1679 NC_012913.1 1673347 1674582 R predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase complement(1673347..1674582) Aggregatibacter aphrophilus NJ8700 8122286 YP_003008100.1 CDS NT05HA_1680 NC_012913.1 1674592 1676490 R identified by Glimmer3; putative; biofilm PGA synthesis lipoprotein PgaB complement(1674592..1676490) Aggregatibacter aphrophilus NJ8700 8122287 YP_003008101.1 CDS NT05HA_1681 NC_012913.1 1676506 1678932 R identified by Glimmer3; putative; PgaA complement(1676506..1678932) Aggregatibacter aphrophilus NJ8700 8122288 YP_003008102.1 CDS NT05HA_1682 NC_012913.1 1679128 1679847 R identified by Glimmer3; putative; purine nucleoside phosphorylase complement(1679128..1679847) Aggregatibacter aphrophilus NJ8700 8122289 YP_003008103.1 CDS NT05HA_1683 NC_012913.1 1679963 1681213 R identified by Glimmer3; putative; pyrimidine nucleoside transport protein complement(1679963..1681213) Aggregatibacter aphrophilus NJ8700 8122290 YP_003008104.1 CDS NT05HA_1684 NC_012913.1 1682175 1683212 R identified by Glimmer3; putative; ADP-heptose--lipooligosaccharide heptosyltransferase III complement(1682175..1683212) Aggregatibacter aphrophilus NJ8700 8122291 YP_003008105.1 CDS aspA NC_012913.1 1683389 1684807 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(1683389..1684807) Aggregatibacter aphrophilus NJ8700 8122292 YP_003008106.1 CDS fxsA NC_012913.1 1685034 1685516 D F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA 1685034..1685516 Aggregatibacter aphrophilus NJ8700 8122293 YP_003008107.1 CDS NT05HA_1687 NC_012913.1 1685600 1685893 D identified by Glimmer3; putative; chaperonin GroS 1685600..1685893 Aggregatibacter aphrophilus NJ8700 8122294 YP_003008108.1 CDS groEL NC_012913.1 1686018 1687661 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 1686018..1687661 Aggregatibacter aphrophilus NJ8700 8122295 YP_003008109.1 CDS NT05HA_1689 NC_012913.1 1687755 1688612 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(1687755..1688612) Aggregatibacter aphrophilus NJ8700 8122296 YP_003008110.1 CDS NT05HA_1692 NC_012913.1 1689167 1690276 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(1689167..1690276) Aggregatibacter aphrophilus NJ8700 8122299 YP_003008111.1 CDS NT05HA_1693 NC_012913.1 1690324 1690449 R identified by Glimmer3; putative; hypothetical protein complement(1690324..1690449) Aggregatibacter aphrophilus NJ8700 8122300 YP_003008112.1 CDS dapF NC_012913.1 1690505 1691329 D involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase 1690505..1691329 Aggregatibacter aphrophilus NJ8700 8122301 YP_003008113.1 CDS xerC NC_012913.1 1691339 1692226 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 1691339..1692226 Aggregatibacter aphrophilus NJ8700 8122302 YP_003008114.1 CDS NT05HA_1696 NC_012913.1 1692238 1692951 D identified by Glimmer3; putative; HAD-superfamily hydrolase 1692238..1692951 Aggregatibacter aphrophilus NJ8700 8122303 YP_003008115.1 CDS NT05HA_1697 NC_012913.1 1693030 1693455 R identified by Glimmer3; putative; excinuclease ATPase subunit complement(1693030..1693455) Aggregatibacter aphrophilus NJ8700 8122304 YP_003008116.1 CDS NT05HA_1698 NC_012913.1 1693642 1694058 D identified by Glimmer3; putative; lipoprotein 1693642..1694058 Aggregatibacter aphrophilus NJ8700 8122305 YP_003008117.1 CDS NT05HA_1699 NC_012913.1 1694065 1694808 D identified by Glimmer3; putative; hypothetical protein 1694065..1694808 Aggregatibacter aphrophilus NJ8700 8122306 YP_003008118.1 CDS NT05HA_1700 NC_012913.1 1694793 1695557 D identified by Glimmer3; putative; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1694793..1695557 Aggregatibacter aphrophilus NJ8700 8122307 YP_003008119.1 CDS NT05HA_1701 NC_012913.1 1695559 1695822 D identified by Glimmer3; putative; acyl carrier protein 1695559..1695822 Aggregatibacter aphrophilus NJ8700 8122308 YP_003008120.1 CDS NT05HA_1702 NC_012913.1 1695824 1696075 D identified by Glimmer3; putative; acyl carrier protein 1695824..1696075 Aggregatibacter aphrophilus NJ8700 8122309 YP_003008121.1 CDS NT05HA_1703 NC_012913.1 1696075 1697751 D identified by Glimmer3; putative; AMP-binding enzyme 1696075..1697751 Aggregatibacter aphrophilus NJ8700 8122310 YP_003008122.1 CDS NT05HA_1704 NC_012913.1 1697777 1698322 D identified by Glimmer3; putative; integral membrane protein 1697777..1698322 Aggregatibacter aphrophilus NJ8700 8122311 YP_003008123.1 CDS NT05HA_1705 NC_012913.1 1698328 1699665 D identified by Glimmer3; putative; AMP-binding enzyme family protein 1698328..1699665 Aggregatibacter aphrophilus NJ8700 8122312 YP_003008124.1 CDS NT05HA_1706 NC_012913.1 1699662 1700384 D identified by Glimmer3; putative; glycosyl transferase, group 2 family protein 1699662..1700384 Aggregatibacter aphrophilus NJ8700 8122313 YP_003008125.1 CDS NT05HA_1707 NC_012913.1 1700381 1701307 D identified by Glimmer3; putative; glycosyl transferase, family 2 1700381..1701307 Aggregatibacter aphrophilus NJ8700 8122314 YP_003008126.1 CDS NT05HA_1708 NC_012913.1 1701304 1701753 D identified by Glimmer3; putative; thioesterase 1701304..1701753 Aggregatibacter aphrophilus NJ8700 8122315 YP_003008127.1 CDS NT05HA_1709 NC_012913.1 1701746 1702069 D identified by Glimmer3; putative; hypothetical protein 1701746..1702069 Aggregatibacter aphrophilus NJ8700 8122316 YP_003008128.1 CDS NT05HA_1710 NC_012913.1 1701943 1702329 D identified by Glimmer3; putative; outer membrane lipoprotein carrier protein LolA 1701943..1702329 Aggregatibacter aphrophilus NJ8700 8122317 YP_003008129.1 CDS NT05HA_1711 NC_012913.1 1702336 1704621 D identified by Glimmer3; putative; hypothetical protein 1702336..1704621 Aggregatibacter aphrophilus NJ8700 8122318 YP_003008130.1 CDS NT05HA_1712 NC_012913.1 1704618 1704956 D identified by Glimmer3; putative; tryptophan halogenase 1704618..1704956 Aggregatibacter aphrophilus NJ8700 8122319 YP_003008131.1 CDS NT05HA_1713 NC_012913.1 1704937 1705854 D identified by Glimmer3; putative; oxidoreductase protein 1704937..1705854 Aggregatibacter aphrophilus NJ8700 8122320 YP_003008132.1 CDS NT05HA_1714 NC_012913.1 1705868 1706350 D identified by Glimmer3; putative; lipoprotein 1705868..1706350 Aggregatibacter aphrophilus NJ8700 8122321 YP_003008133.1 CDS NT05HA_1715 NC_012913.1 1706359 1707582 D identified by Glimmer3; putative; 3-oxoacyl-ACP synthase 1706359..1707582 Aggregatibacter aphrophilus NJ8700 8122322 YP_003008134.1 CDS NT05HA_1716 NC_012913.1 1707575 1708018 D identified by Glimmer3; putative; thioester dehydrase family protein 1707575..1708018 Aggregatibacter aphrophilus NJ8700 8122323 YP_003008135.1 CDS fabG NC_012913.1 1708064 1708792 D Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase 1708064..1708792 Aggregatibacter aphrophilus NJ8700 8122324 YP_003008136.1 CDS NT05HA_1718 NC_012913.1 1708857 1710101 D identified by Glimmer3; putative; beta-ketoacyl-ACP synthase IV 1708857..1710101 Aggregatibacter aphrophilus NJ8700 8122325 YP_003008137.1 CDS pssA NC_012913.1 1710173 1711540 R catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase complement(1710173..1711540) Aggregatibacter aphrophilus NJ8700 8122326 YP_003008138.1 CDS NT05HA_1720 NC_012913.1 1711735 1712802 D identified by Glimmer3; putative; ATP-dependent RNA helicase SrmB 1711735..1712802 Aggregatibacter aphrophilus NJ8700 8122327 YP_003008139.1 CDS NT05HA_1721 NC_012913.1 1712765 1712881 D identified by Glimmer3; putative; ferredoxin 1712765..1712881 Aggregatibacter aphrophilus NJ8700 8122328 YP_003008140.1 CDS NT05HA_1722 NC_012913.1 1712863 1713123 R identified by Glimmer3; putative; hypothetical protein complement(1712863..1713123) Aggregatibacter aphrophilus NJ8700 8122329 YP_003008141.1 CDS NT05HA_1723 NC_012913.1 1713191 1713886 D identified by Glimmer3; putative; ribonuclease T2 family 1713191..1713886 Aggregatibacter aphrophilus NJ8700 8122330 YP_003008142.1 CDS pgk NC_012913.1 1714013 1715176 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1714013..1715176 Aggregatibacter aphrophilus NJ8700 8122331 YP_003008143.1 CDS NT05HA_1725 NC_012913.1 1715347 1716426 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 1715347..1716426 Aggregatibacter aphrophilus NJ8700 8122332 YP_003008144.1 CDS NT05HA_1726 NC_012913.1 1716499 1717758 D identified by Glimmer3; putative; RfaL protein 1716499..1717758 Aggregatibacter aphrophilus NJ8700 8122333 YP_003008145.1 CDS NT05HA_1727 NC_012913.1 1717745 1718698 D identified by Glimmer3; putative; CrcB protein 1717745..1718698 Aggregatibacter aphrophilus NJ8700 8122334 YP_003008146.1 CDS NT05HA_1728 NC_012913.1 1718655 1719041 R identified by Glimmer3; putative; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(1718655..1719041) Aggregatibacter aphrophilus NJ8700 8122335 YP_003008147.1 CDS NT05HA_1729 NC_012913.1 1719041 1719859 R identified by Glimmer3; putative; protein cof complement(1719041..1719859) Aggregatibacter aphrophilus NJ8700 8122336 YP_003008148.1 CDS NT05HA_1730 NC_012913.1 1720027 1721679 D catalyzes the formation of 2-acetolactate from pyruvate; also known as acetolactate synthase large subunit; acetolactate synthase 2 catalytic subunit 1720027..1721679 Aggregatibacter aphrophilus NJ8700 8122337 YP_003008149.1 CDS NT05HA_1731 NC_012913.1 1721684 1721899 D identified by Glimmer3; putative; (ahas-ii)(acetohydroxy-acid synthase ii small subunit) (als-ii); acetolactate synthase isozyme II small subunit 1721684..1721899 Aggregatibacter aphrophilus NJ8700 8122338 YP_003008150.1 CDS NT05HA_1732 NC_012913.1 1721899 1722363 D identified by Glimmer3; putative; hypothetical protein 1721899..1722363 Aggregatibacter aphrophilus NJ8700 8122339 YP_003008151.1 CDS NT05HA_1733 NC_012913.1 1722720 1722854 D identified by Glimmer3; putative; hypothetical protein 1722720..1722854 Aggregatibacter aphrophilus NJ8700 8122340 YP_003008152.1 CDS NT05HA_1734 NC_012913.1 1722888 1724726 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1722888..1724726 Aggregatibacter aphrophilus NJ8700 8122341 YP_003008153.1 CDS NT05HA_1735 NC_012913.1 1724914 1726482 D threonine deaminase; threonine dehydratase; in Escherichia coli, IlvA is part of the isoleucine biosynthetic pathway; threonine dehydratase 1724914..1726482 Aggregatibacter aphrophilus NJ8700 8122342 YP_003008154.1 CDS NT05HA_1736 NC_012913.1 1726627 1727544 D identified by Glimmer3; putative; dialkylrecorsinol condensing enzyme 1726627..1727544 Aggregatibacter aphrophilus NJ8700 8122343 YP_003008155.1 CDS NT05HA_1737 NC_012913.1 1727547 1728707 D FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; this condensing enzyme differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III 1727547..1728707 Aggregatibacter aphrophilus NJ8700 8122344 YP_003008156.1 CDS NT05HA_1738 NC_012913.1 1728697 1729086 D identified by Glimmer3; putative; hypothetical protein 1728697..1729086 Aggregatibacter aphrophilus NJ8700 8122345 YP_003008157.1 CDS NT05HA_1739 NC_012913.1 1729119 1730108 D identified by Glimmer3; putative; hypothetical protein 1729119..1730108 Aggregatibacter aphrophilus NJ8700 8122346 YP_003008158.1 CDS NT05HA_1740 NC_012913.1 1730105 1730827 D identified by Glimmer3; putative; ABC transporter ATP-binding protein 1730105..1730827 Aggregatibacter aphrophilus NJ8700 8122347 YP_003008159.1 CDS NT05HA_1741 NC_012913.1 1730821 1732062 D identified by Glimmer3; putative; ABC-2; hypothetical protein 1730821..1732062 Aggregatibacter aphrophilus NJ8700 8122348 YP_003008160.1 CDS NT05HA_1742 NC_012913.1 1732062 1732352 D identified by Glimmer3; putative; acyl-carrier protein 1732062..1732352 Aggregatibacter aphrophilus NJ8700 8122349 YP_003008161.1 CDS NT05HA_1743 NC_012913.1 1732352 1733305 D identified by Glimmer3; putative; beta-ketoacyl synthase 1732352..1733305 Aggregatibacter aphrophilus NJ8700 8122350 YP_003008162.1 CDS NT05HA_1744 NC_012913.1 1733333 1733941 D identified by Glimmer3; putative; hypothetical protein 1733333..1733941 Aggregatibacter aphrophilus NJ8700 8122351 YP_003008164.1 CDS hemG NC_012913.1 1740080 1740604 R catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase complement(1740080..1740604) Aggregatibacter aphrophilus NJ8700 8122120 YP_003008165.1 CDS NT05HA_1752 NC_012913.1 1740592 1742055 R identified by Glimmer3; putative; hypothetical protein complement(1740592..1742055) Aggregatibacter aphrophilus NJ8700 8122121 YP_003008166.1 CDS NT05HA_1751 NC_012913.1 1742001 1742162 D identified by Glimmer3; putative; TrkG protein 1742001..1742162 Aggregatibacter aphrophilus NJ8700 8122122 YP_003008167.1 CDS NT05HA_1753 NC_012913.1 1742275 1742514 D identified by Glimmer3; putative; sulfurtransferase TusA 1742275..1742514 Aggregatibacter aphrophilus NJ8700 8122123 YP_003008168.1 CDS NT05HA_1754 NC_012913.1 1742543 1742791 D identified by Glimmer3; putative; hypothetical protein 1742543..1742791 Aggregatibacter aphrophilus NJ8700 8122124 YP_003008169.1 CDS NT05HA_1755 NC_012913.1 1742876 1744147 D catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase 1742876..1744147 Aggregatibacter aphrophilus NJ8700 8122125 YP_003008170.1 CDS NT05HA_1756 NC_012913.1 1744164 1744847 D identified by Glimmer3; putative; murein transglycosylase C 1744164..1744847 Aggregatibacter aphrophilus NJ8700 8122126 YP_003008171.1 CDS NT05HA_1757 NC_012913.1 1744950 1746179 D identified by Glimmer3; putative; phosphoglycerate kinase 1744950..1746179 Aggregatibacter aphrophilus NJ8700 8122127 YP_003008172.1 CDS NT05HA_1759 NC_012913.1 1746274 1746897 R identified by Glimmer3; putative; hypothetical protein complement(1746274..1746897) Aggregatibacter aphrophilus NJ8700 8122128 YP_003008173.1 CDS NT05HA_1758 NC_012913.1 1746857 1746997 D identified by Glimmer3; putative; ComEA protein 1746857..1746997 Aggregatibacter aphrophilus NJ8700 8122129 YP_003008174.1 CDS NT05HA_1760 NC_012913.1 1747142 1749712 D identified by Glimmer3; putative; ATP-dependent chaperone ClpB 1747142..1749712 Aggregatibacter aphrophilus NJ8700 8122130 YP_003008175.1 CDS NT05HA_1761 NC_012913.1 1749811 1750308 R identified by Glimmer3; putative; lipoprotein complement(1749811..1750308) Aggregatibacter aphrophilus NJ8700 8122131 YP_003008176.1 CDS NT05HA_1762 NC_012913.1 1750437 1751531 D identified by Glimmer3; putative; phosphoribosylformylglycinamidine cyclo-ligase 1750437..1751531 Aggregatibacter aphrophilus NJ8700 8122132 YP_003008177.1 CDS purN NC_012913.1 1751531 1752169 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 1751531..1752169 Aggregatibacter aphrophilus NJ8700 8122133 YP_003008178.1 CDS NT05HA_1764 NC_012913.1 1752211 1753026 R identified by Glimmer3; putative; Cof protein complement(1752211..1753026) Aggregatibacter aphrophilus NJ8700 8122134 YP_003008179.1 CDS NT05HA_1765 NC_012913.1 1753186 1753872 D identified by Glimmer3; putative; protein GntX 1753186..1753872 Aggregatibacter aphrophilus NJ8700 8122135 YP_003008180.1 CDS NT05HA_1766 NC_012913.1 1753984 1754568 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 1753984..1754568 Aggregatibacter aphrophilus NJ8700 8122136 YP_003008181.1 CDS NT05HA_1767 NC_012913.1 1754617 1755219 R identified by Glimmer3; putative; histidine biosynthesis bifunctional protein hisIE complement(1754617..1755219) Aggregatibacter aphrophilus NJ8700 8122137 YP_003008182.1 CDS NT05HA_1768 NC_012913.1 1755219 1755602 R identified by Glimmer3; putative; hypothetical protein complement(1755219..1755602) Aggregatibacter aphrophilus NJ8700 8122138 YP_003008183.1 CDS NT05HA_1769 NC_012913.1 1756020 1756793 R catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF complement(1756020..1756793) Aggregatibacter aphrophilus NJ8700 8122139 YP_003008184.1 CDS NT05HA_1770 NC_012913.1 1756775 1757518 R catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase complement(1756775..1757518) Aggregatibacter aphrophilus NJ8700 8122140 YP_003008185.1 CDS NT05HA_1771 NC_012913.1 1757607 1758062 R identified by Glimmer3; putative; hypothetical protein complement(1757607..1758062) Aggregatibacter aphrophilus NJ8700 8122141 YP_003008186.1 CDS hisH NC_012913.1 1758183 1758782 R with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH complement(1758183..1758782) Aggregatibacter aphrophilus NJ8700 8122142 YP_003008187.1 CDS NT05HA_1773 NC_012913.1 1758784 1759176 R identified by Glimmer3; putative; hypothetical protein complement(1758784..1759176) Aggregatibacter aphrophilus NJ8700 8122143 YP_003008188.1 CDS NT05HA_1774 NC_012913.1 1759674 1760762 R catalyzes the formation of 3-(imidazol-4-yl)-2-oxopropyl phosphate from D-ethythro-1-(imidazol-4-yl)glycerol 3-phosphate and histidinol from histidinol phosphate; imidazole glycerol-phosphate dehydratase/histidinol phosphatase complement(1759674..1760762) Aggregatibacter aphrophilus NJ8700 8122144 YP_003008189.1 CDS NT05HA_1775 NC_012913.1 1760905 1761960 R catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase complement(1760905..1761960) Aggregatibacter aphrophilus NJ8700 8122145 YP_003008190.1 CDS hisD NC_012913.1 1761973 1763259 R catalyzes the oxidation of L-histidinol to L-histidinaldehyde and then to L-histidine in histidine biosynthesis; functions as a dimer; histidinol dehydrogenase complement(1761973..1763259) Aggregatibacter aphrophilus NJ8700 8122146 YP_003008191.1 CDS hisG NC_012913.1 1763335 1764234 R long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase complement(1763335..1764234) Aggregatibacter aphrophilus NJ8700 8122147 YP_003008192.1 CDS NT05HA_1778 NC_012913.1 1764533 1765834 R identified by Glimmer3; putative; branched-chain amino acid transport system II carrier protein complement(1764533..1765834) Aggregatibacter aphrophilus NJ8700 8122148 YP_003008193.1 CDS pyrG NC_012913.1 1766073 1767707 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1766073..1767707 Aggregatibacter aphrophilus NJ8700 8122149 YP_003008194.1 CDS NT05HA_1780 NC_012913.1 1768019 1768681 D identified by Glimmer3; putative; thiamine-phosphate pyrophosphorylase 1768019..1768681 Aggregatibacter aphrophilus NJ8700 8122150 YP_003008195.1 CDS eno NC_012913.1 1768869 1770179 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 1768869..1770179 Aggregatibacter aphrophilus NJ8700 8122151 YP_003008196.1 CDS NT05HA_1782 NC_012913.1 1770283 1770702 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(1770283..1770702) Aggregatibacter aphrophilus NJ8700 8122152 YP_003008197.1 CDS NT05HA_1783 NC_012913.1 1770702 1771262 R identified by Glimmer3; putative; hypothetical protein complement(1770702..1771262) Aggregatibacter aphrophilus NJ8700 8122153 YP_003008198.1 CDS NT05HA_1784 NC_012913.1 1771268 1772002 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(1771268..1772002) Aggregatibacter aphrophilus NJ8700 8122154 YP_003008199.1 CDS NT05HA_1785 NC_012913.1 1772074 1772391 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ complement(1772074..1772391) Aggregatibacter aphrophilus NJ8700 8122155 YP_003008200.1 CDS NT05HA_1786 NC_012913.1 1772542 1773429 R identified by Glimmer3; putative; UTP-glucose-1-phosphate uridylyltransferase complement(1772542..1773429) Aggregatibacter aphrophilus NJ8700 8122156 YP_003008201.1 CDS NT05HA_1787 NC_012913.1 1773494 1773616 R identified by Glimmer3; putative; phosphomannomutase (PMM) complement(1773494..1773616) Aggregatibacter aphrophilus NJ8700 8122157 YP_003008202.1 CDS NT05HA_1788 NC_012913.1 1773661 1773843 R identified by Glimmer3; putative; carbon storage regulator complement(1773661..1773843) Aggregatibacter aphrophilus NJ8700 8122158 YP_003008203.1 CDS alaS NC_012913.1 1773985 1776609 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(1773985..1776609) Aggregatibacter aphrophilus NJ8700 8122159 YP_003008204.1 CDS NT05HA_1790 NC_012913.1 1776818 1777243 R identified by Glimmer3; putative; universal stress protein A complement(1776818..1777243) Aggregatibacter aphrophilus NJ8700 8122160 YP_003008205.1 CDS mazG NC_012913.1 1777436 1778230 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1777436..1778230 Aggregatibacter aphrophilus NJ8700 8122161 YP_003008206.1 CDS NT05HA_1792 NC_012913.1 1778323 1779312 R identified by Glimmer3; putative; hypothetical protein complement(1778323..1779312) Aggregatibacter aphrophilus NJ8700 8122162 YP_003008207.1 CDS NT05HA_1793 NC_012913.1 1779568 1781307 R identified by Glimmer3; putative; nucleoid-associated protein NdpA complement(1779568..1781307) Aggregatibacter aphrophilus NJ8700 8122163 YP_003008208.1 CDS NT05HA_1794 NC_012913.1 1781314 1781535 R identified by Glimmer3; putative; hypothetical protein complement(1781314..1781535) Aggregatibacter aphrophilus NJ8700 8122164 YP_003008209.1 CDS NT05HA_1795 NC_012913.1 1781661 1782683 D identified by Glimmer3; putative; nucleoid-associated protein NdpA 1781661..1782683 Aggregatibacter aphrophilus NJ8700 8122165 YP_003008210.1 CDS NT05HA_1796 NC_012913.1 1782750 1783163 D identified by Glimmer3; putative; SmpA protein 1782750..1783163 Aggregatibacter aphrophilus NJ8700 8122166 YP_003008211.1 CDS NT05HA_1797 NC_012913.1 1783209 1783904 D identified by Glimmer3; putative; CpxR 1783209..1783904 Aggregatibacter aphrophilus NJ8700 8122167 YP_003008212.1 CDS cpxA NC_012913.1 1783954 1785342 D part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 1783954..1785342 Aggregatibacter aphrophilus NJ8700 8122168 YP_003008213.1 CDS NT05HA_1799 NC_012913.1 1785409 1786617 R identified by Glimmer3; putative; sodium/glutamate symporter complement(1785409..1786617) Aggregatibacter aphrophilus NJ8700 8122169 YP_003008214.1 CDS NT05HA_1800 NC_012913.1 1786785 1787219 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(1786785..1787219) Aggregatibacter aphrophilus NJ8700 8122170 YP_003008215.1 CDS rbn NC_012913.1 1787216 1788052 R RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN complement(1787216..1788052) Aggregatibacter aphrophilus NJ8700 8122171 YP_003008216.1 CDS NT05HA_1802 NC_012913.1 1788049 1788522 R identified by Glimmer3; putative; hypothetical protein complement(1788049..1788522) Aggregatibacter aphrophilus NJ8700 8122172 YP_003008217.1 CDS NT05HA_1803 NC_012913.1 1788525 1789193 R identified by Glimmer3; putative; uridine phosphorylase complement(1788525..1789193) Aggregatibacter aphrophilus NJ8700 8122173 YP_003008218.1 CDS NT05HA_1804 NC_012913.1 1789319 1790818 D identified by Glimmer3; putative; ATP-binding protein 1789319..1790818 Aggregatibacter aphrophilus NJ8700 8122174 YP_003008219.1 CDS NT05HA_1805 NC_012913.1 1791062 1791877 D identified by Glimmer3; putative; O-methyltransferase N-terminus family protein 1791062..1791877 Aggregatibacter aphrophilus NJ8700 8122175 YP_003008220.1 CDS NT05HA_1806 NC_012913.1 1791953 1793785 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(1791953..1793785) Aggregatibacter aphrophilus NJ8700 8122176 YP_003008221.1 CDS NT05HA_1807 NC_012913.1 1793834 1794610 R identified by Glimmer3; putative; glucitol operon repressor complement(1793834..1794610) Aggregatibacter aphrophilus NJ8700 8122177 YP_003008222.1 CDS NT05HA_1808 NC_012913.1 1794749 1795021 R identified by Glimmer3; putative; DNA-binding protein HU-beta complement(1794749..1795021) Aggregatibacter aphrophilus NJ8700 8122178 YP_003008223.1 CDS NT05HA_1809 NC_012913.1 1795187 1795777 R identified by Glimmer3; putative; D-fructose-6-phosphate amidotransferase complement(1795187..1795777) Aggregatibacter aphrophilus NJ8700 8122179 YP_003008224.1 CDS hemE NC_012913.1 1795795 1796859 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(1795795..1796859) Aggregatibacter aphrophilus NJ8700 8122180 YP_003008225.1 CDS nudC NC_012913.1 1796867 1797649 R can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase complement(1796867..1797649) Aggregatibacter aphrophilus NJ8700 8122181 YP_003008226.1 CDS NT05HA_1812 NC_012913.1 1797966 1802234 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(1797966..1802234) Aggregatibacter aphrophilus NJ8700 8122182 YP_003008227.1 CDS rpoB NC_012913.1 1802338 1806366 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(1802338..1806366) Aggregatibacter aphrophilus NJ8700 8122183 YP_003008228.1 CDS rplL NC_012913.1 1806635 1807006 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(1806635..1807006) Aggregatibacter aphrophilus NJ8700 8122184 YP_003008229.1 CDS rplJ NC_012913.1 1807058 1807549 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(1807058..1807549) Aggregatibacter aphrophilus NJ8700 8122185 YP_003008230.1 CDS rplA NC_012913.1 1807913 1808602 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(1807913..1808602) Aggregatibacter aphrophilus NJ8700 8122186 YP_003008231.1 CDS rplK NC_012913.1 1808607 1809035 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(1808607..1809035) Aggregatibacter aphrophilus NJ8700 8122187 YP_003008232.1 CDS NT05HA_1818 NC_012913.1 1809205 1809756 R identified by Glimmer3; putative; transcription termination/antitermination factor NusG complement(1809205..1809756) Aggregatibacter aphrophilus NJ8700 8122188 YP_003008233.1 CDS secE NC_012913.1 1809758 1810168 R forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE complement(1809758..1810168) Aggregatibacter aphrophilus NJ8700 8122189 YP_003008234.1 CDS NT05HA_1820 NC_012913.1 1811033 1811548 D identified by Glimmer3; putative; hemolysin co-regulated protein 1811033..1811548 Aggregatibacter aphrophilus NJ8700 8122190 YP_003008235.1 CDS NT05HA_1821 NC_012913.1 1812311 1812619 R identified by Glimmer3; putative; virulence gene repressor RsaL complement(1812311..1812619) Aggregatibacter aphrophilus NJ8700 8122191 YP_003008236.1 CDS NT05HA_1822 NC_012913.1 1812616 1812963 R identified by Glimmer3; putative; toxin HigB-2 complement(1812616..1812963) Aggregatibacter aphrophilus NJ8700 8122192 YP_003008237.1 CDS NT05HA_1823 NC_012913.1 1813026 1813565 R identified by Glimmer3; putative; hypothetical protein complement(1813026..1813565) Aggregatibacter aphrophilus NJ8700 8122193 YP_003008238.1 CDS NT05HA_1824 NC_012913.1 1813570 1813758 R identified by Glimmer3; putative; hypothetical protein complement(1813570..1813758) Aggregatibacter aphrophilus NJ8700 8122194 YP_003008239.1 CDS NT05HA_1825 NC_012913.1 1813758 1814003 R identified by Glimmer3; putative; hypothetical protein complement(1813758..1814003) Aggregatibacter aphrophilus NJ8700 8121395 YP_003008240.1 CDS NT05HA_1826 NC_012913.1 1813996 1814919 R identified by Glimmer3; putative; hypothetical protein complement(1813996..1814919) Aggregatibacter aphrophilus NJ8700 8121396 YP_003008241.1 CDS NT05HA_1827 NC_012913.1 1815078 1815380 R identified by Glimmer3; putative; hypothetical protein complement(1815078..1815380) Aggregatibacter aphrophilus NJ8700 8121397 YP_003008242.1 CDS NT05HA_1828 NC_012913.1 1815660 1816157 R identified by Glimmer3; putative; hypothetical protein complement(1815660..1816157) Aggregatibacter aphrophilus NJ8700 8121398 YP_003008243.1 CDS NT05HA_1829 NC_012913.1 1816229 1816666 R identified by Glimmer3; putative; phage anti-repressor protein complement(1816229..1816666) Aggregatibacter aphrophilus NJ8700 8121399 YP_003008244.1 CDS NT05HA_1830 NC_012913.1 1816676 1816810 D identified by Glimmer3; putative; hypothetical protein 1816676..1816810 Aggregatibacter aphrophilus NJ8700 8121400 YP_003008245.1 CDS NT05HA_1831 NC_012913.1 1816839 1816994 R identified by Glimmer3; putative; hypothetical protein complement(1816839..1816994) Aggregatibacter aphrophilus NJ8700 8121401 YP_003008246.1 CDS NT05HA_1832 NC_012913.1 1817288 1817671 R identified by Glimmer3; putative; hypothetical protein complement(1817288..1817671) Aggregatibacter aphrophilus NJ8700 8121402 YP_003008247.1 CDS NT05HA_1833 NC_012913.1 1817830 1818141 R identified by Glimmer3; putative; hypothetical protein complement(1817830..1818141) Aggregatibacter aphrophilus NJ8700 8121403 YP_003008248.1 CDS NT05HA_1834 NC_012913.1 1818166 1818618 R identified by Glimmer3; putative; hypothetical protein complement(1818166..1818618) Aggregatibacter aphrophilus NJ8700 8121404 YP_003008249.1 CDS NT05HA_1835 NC_012913.1 1818632 1818892 R identified by Glimmer3; putative; hypothetical protein complement(1818632..1818892) Aggregatibacter aphrophilus NJ8700 8121405 YP_003008250.1 CDS NT05HA_1836 NC_012913.1 1818903 1819112 R identified by Glimmer3; putative; AlpA family transcriptional regulator complement(1818903..1819112) Aggregatibacter aphrophilus NJ8700 8121406 YP_003008251.1 CDS NT05HA_1837 NC_012913.1 1819306 1819809 R identified by Glimmer3; putative; hypothetical protein complement(1819306..1819809) Aggregatibacter aphrophilus NJ8700 8121407 YP_003008252.1 CDS NT05HA_1838 NC_012913.1 1819932 1821176 R identified by Glimmer3; putative; integrase complement(1819932..1821176) Aggregatibacter aphrophilus NJ8700 8121408 YP_003008253.1 CDS NT05HA_1839 NC_012913.1 1822043 1823134 D identified by Glimmer3; putative; transporter 1822043..1823134 Aggregatibacter aphrophilus NJ8700 8121409 YP_003008254.1 CDS NT05HA_1840 NC_012913.1 1823143 1823277 D identified by Glimmer3; putative; hypothetical protein 1823143..1823277 Aggregatibacter aphrophilus NJ8700 8121410 YP_003008255.1 CDS NT05HA_1841 NC_012913.1 1823556 1824680 D identified by Glimmer3; putative; filamentation induced by cAMP protein Fic 1823556..1824680 Aggregatibacter aphrophilus NJ8700 8121411 YP_003008256.1 CDS NT05HA_1842 NC_012913.1 1824748 1826661 D similar to restriction enzyme BgcI alpha subunit; identified by Glimmer3; putative; restriction enzyme 1824748..1826661 Aggregatibacter aphrophilus NJ8700 8121412 YP_003008257.1 CDS NT05HA_1843 NC_012913.1 1826654 1828267 D similar to restriction enzyme BgcI subunit beta (S.BcgI); identified by Glimmer3; putative; restriction enzyme 1826654..1828267 Aggregatibacter aphrophilus NJ8700 8121413 YP_003008258.1 CDS NT05HA_1844 NC_012913.1 1828331 1828507 R identified by Glimmer3; putative; hypothetical protein complement(1828331..1828507) Aggregatibacter aphrophilus NJ8700 8121414 YP_003008259.1 CDS NT05HA_1845 NC_012913.1 1828537 1831137 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(1828537..1831137) Aggregatibacter aphrophilus NJ8700 8121415 YP_003008260.1 CDS NT05HA_1846 NC_012913.1 1831162 1832487 R facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB complement(1831162..1832487) Aggregatibacter aphrophilus NJ8700 8121416 YP_003008261.1 CDS NT05HA_1847 NC_012913.1 1832577 1833281 D identified by Glimmer3; putative; phosphatidylserine synthase 1832577..1833281 Aggregatibacter aphrophilus NJ8700 8121417 YP_003008262.1 CDS NT05HA_1848 NC_012913.1 1833338 1834063 R identified by Glimmer3; putative; PnuC transporter complement(1833338..1834063) Aggregatibacter aphrophilus NJ8700 8121418 YP_003008263.1 CDS NT05HA_1849 NC_012913.1 1834225 1837083 D identified by Glimmer3; putative; RNA polymerase-associated protein RapA 1834225..1837083 Aggregatibacter aphrophilus NJ8700 8121419 YP_003008264.1 CDS NT05HA_1850 NC_012913.1 1837086 1837745 D identified by Glimmer3; putative; ribosomal large subunit pseudouridine synthase A 1837086..1837745 Aggregatibacter aphrophilus NJ8700 8121420 YP_003008265.1 CDS NT05HA_1851 NC_012913.1 1837937 1838434 D identified by Glimmer3; putative; type VI secretion protein 1837937..1838434 Aggregatibacter aphrophilus NJ8700 8121421 YP_003008266.1 CDS NT05HA_1852 NC_012913.1 1838456 1839940 D identified by Glimmer3; putative; type VI secretion protein, EvpB/family 1838456..1839940 Aggregatibacter aphrophilus NJ8700 8121422 YP_003008267.1 CDS NT05HA_1853 NC_012913.1 1839950 1840366 D identified by Glimmer3; putative; type VI secretion system lysozyme-like protein 1839950..1840366 Aggregatibacter aphrophilus NJ8700 8121423 YP_003008268.1 CDS NT05HA_1854 NC_012913.1 1840367 1842118 D identified by Glimmer3; putative; type VI secretion protein 1840367..1842118 Aggregatibacter aphrophilus NJ8700 8121424 YP_003008269.1 CDS NT05HA_1855 NC_012913.1 1842082 1843080 D identified by Glimmer3; putative; type VI secretion protein 1842082..1843080 Aggregatibacter aphrophilus NJ8700 8121425 YP_003008270.1 CDS NT05HA_1856 NC_012913.1 1843082 1843867 D identified by Glimmer3; putative; hypothetical protein 1843082..1843867 Aggregatibacter aphrophilus NJ8700 8121426 YP_003008271.1 CDS NT05HA_1857 NC_012913.1 1843882 1844568 D identified by Glimmer3; putative; type VI secretion lipoprotein, family 1843882..1844568 Aggregatibacter aphrophilus NJ8700 8121427 YP_003008272.1 CDS NT05HA_1858 NC_012913.1 1844572 1845915 D identified by Glimmer3; putative; type VI secretion protein 1844572..1845915 Aggregatibacter aphrophilus NJ8700 8121428 YP_003008273.1 CDS NT05HA_1859 NC_012913.1 1845912 1846769 D identified by Glimmer3; putative; VasF 1845912..1846769 Aggregatibacter aphrophilus NJ8700 8121429 YP_003008274.1 CDS NT05HA_1860 NC_012913.1 1846795 1847421 D identified by Glimmer3; putative; hypothetical protein 1846795..1847421 Aggregatibacter aphrophilus NJ8700 8121430 YP_003008275.1 CDS NT05HA_1861 NC_012913.1 1847423 1848850 D identified by Glimmer3; putative; hypothetical protein 1847423..1848850 Aggregatibacter aphrophilus NJ8700 8121431 YP_003008276.1 CDS NT05HA_1862 NC_012913.1 1849033 1852530 D identified by Glimmer3; putative; type VI secretion protein IcmF 1849033..1852530 Aggregatibacter aphrophilus NJ8700 8121432 YP_003008277.1 CDS NT05HA_1863 NC_012913.1 1852725 1852856 R identified by Glimmer3; putative; hypothetical protein complement(1852725..1852856) Aggregatibacter aphrophilus NJ8700 8121433 YP_003008278.1 CDS NT05HA_1864 NC_012913.1 1853020 1856250 D identified by Glimmer3; putative; outer membrane autotransporter barrel 1853020..1856250 Aggregatibacter aphrophilus NJ8700 8121434 YP_003008279.1 CDS ribB NC_012913.1 1856357 1857001 R DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(1856357..1857001) Aggregatibacter aphrophilus NJ8700 8121435 YP_003008280.1 CDS NT05HA_1866 NC_012913.1 1857406 1858335 R identified by Glimmer3; putative; transporter, auxin efflux carrier (AEC) family complement(1857406..1858335) Aggregatibacter aphrophilus NJ8700 8121436 YP_003008281.1 CDS NT05HA_1870 NC_012913.1 1859908 1860891 R identified by Glimmer3; putative; hypothetical protein complement(1859908..1860891) Aggregatibacter aphrophilus NJ8700 8121438 YP_003008282.1 CDS NT05HA_1871 NC_012913.1 1860900 1861034 R identified by Glimmer3; putative; hypothetical protein complement(1860900..1861034) Aggregatibacter aphrophilus NJ8700 8121439 YP_003008283.1 CDS NT05HA_1872 NC_012913.1 1861075 1861392 R identified by Glimmer3; putative; hypothetical protein complement(1861075..1861392) Aggregatibacter aphrophilus NJ8700 8121440 YP_003008284.1 CDS NT05HA_1873 NC_012913.1 1861449 1863113 R identified by Glimmer3; putative; PTS system fructose-specific transporter subunit IIBC complement(1861449..1863113) Aggregatibacter aphrophilus NJ8700 8121441 YP_003008285.1 CDS fruK NC_012913.1 1863118 1864059 R converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; 1-phosphofructokinase complement(1863118..1864059) Aggregatibacter aphrophilus NJ8700 8121442 YP_003008286.1 CDS NT05HA_1875 NC_012913.1 1864062 1865600 R phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein complement(1864062..1865600) Aggregatibacter aphrophilus NJ8700 8121443 YP_003008287.1 CDS NT05HA_1876 NC_012913.1 1865709 1866230 R identified by Glimmer3; putative; DNA polymerase III subunit delta' complement(1865709..1866230) Aggregatibacter aphrophilus NJ8700 8121444 YP_003008288.1 CDS mobA NC_012913.1 1866341 1866922 R in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA complement(1866341..1866922) Aggregatibacter aphrophilus NJ8700 8121445 YP_003008289.1 CDS NT05HA_1878 NC_012913.1 1866995 1867261 D identified by Glimmer3; putative; YihD 1866995..1867261 Aggregatibacter aphrophilus NJ8700 8121446 YP_003008290.1 CDS NT05HA_1879 NC_012913.1 1867276 1867893 D identified by Glimmer3; putative; thiol:disulfide interchange protein DsbA 1867276..1867893 Aggregatibacter aphrophilus NJ8700 8121447 YP_003008291.1 CDS NT05HA_1880 NC_012913.1 1867952 1868281 D ORF3; identified by Glimmer3; putative; hypothetical protein 1867952..1868281 Aggregatibacter aphrophilus NJ8700 8121448 YP_003008292.1 CDS NT05HA_1881 NC_012913.1 1868341 1869438 D catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase 1868341..1869438 Aggregatibacter aphrophilus NJ8700 8121449 YP_003008293.1 CDS NT05HA_1882 NC_012913.1 1869441 1870196 D identified by Glimmer3; putative; DNA polymerase I 1869441..1870196 Aggregatibacter aphrophilus NJ8700 8121450 YP_003008294.1 CDS NT05HA_1883 NC_012913.1 1870397 1872097 D identified by Glimmer3; putative; hypothetical protein 1870397..1872097 Aggregatibacter aphrophilus NJ8700 8121451 YP_003008295.1 CDS NT05HA_1884 NC_012913.1 1872090 1873361 D identified by Glimmer3; putative; hypothetical protein 1872090..1873361 Aggregatibacter aphrophilus NJ8700 8121452 YP_003008296.1 CDS NT05HA_1885 NC_012913.1 1873570 1873722 D identified by Glimmer3; putative; hypothetical protein 1873570..1873722 Aggregatibacter aphrophilus NJ8700 8121453 YP_003008297.1 CDS NT05HA_1886 NC_012913.1 1875209 1875328 D identified by Glimmer3; putative; hypothetical protein 1875209..1875328 Aggregatibacter aphrophilus NJ8700 8121454 YP_003008298.1 CDS NT05HA_1887 NC_012913.1 1875788 1876015 D identified by Glimmer3; putative; hypothetical protein 1875788..1876015 Aggregatibacter aphrophilus NJ8700 8121455 YP_003008299.1 CDS NT05HA_1888 NC_012913.1 1876201 1876380 D identified by Glimmer3; putative; hypothetical protein 1876201..1876380 Aggregatibacter aphrophilus NJ8700 8121456 YP_003008300.1 CDS NT05HA_1889 NC_012913.1 1876373 1877698 D identified by Glimmer3; putative; hypothetical protein 1876373..1877698 Aggregatibacter aphrophilus NJ8700 8121457 YP_003008301.1 CDS NT05HA_1890 NC_012913.1 1878660 1878839 D identified by Glimmer3; putative; hypothetical protein 1878660..1878839 Aggregatibacter aphrophilus NJ8700 8121458 YP_003008302.1 CDS NT05HA_1891 NC_012913.1 1878832 1880103 D identified by Glimmer3; putative; hypothetical protein 1878832..1880103 Aggregatibacter aphrophilus NJ8700 8121459 YP_003008303.1 CDS NT05HA_1892 NC_012913.1 1880710 1880877 D identified by Glimmer3; putative; hypothetical protein 1880710..1880877 Aggregatibacter aphrophilus NJ8700 8121460 YP_003008304.1 CDS NT05HA_1893 NC_012913.1 1881189 1881401 D identified by Glimmer3; putative; hypothetical protein 1881189..1881401 Aggregatibacter aphrophilus NJ8700 8121461 YP_003008305.1 CDS NT05HA_1894 NC_012913.1 1882020 1882163 D identified by Glimmer3; putative; SAM-dependent methyltransferase 1882020..1882163 Aggregatibacter aphrophilus NJ8700 8121462 YP_003008306.1 CDS NT05HA_1895 NC_012913.1 1882330 1883244 R identified by Glimmer3; putative; N-acetylmuramic acid 6-phosphate etherase complement(1882330..1883244) Aggregatibacter aphrophilus NJ8700 8121463 YP_003008307.1 CDS anmK NC_012913.1 1883241 1884371 R catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase complement(1883241..1884371) Aggregatibacter aphrophilus NJ8700 8121464 YP_003008308.1 CDS glmU NC_012913.1 1884454 1885821 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 1884454..1885821 Aggregatibacter aphrophilus NJ8700 8121465 YP_003008309.1 CDS NT05HA_1898 NC_012913.1 1885944 1887272 D identified by Glimmer3; putative; branched-chain amino acid transport system II carrier protein 1885944..1887272 Aggregatibacter aphrophilus NJ8700 8121466 YP_003008310.1 CDS NT05HA_1899 NC_012913.1 1887381 1888661 R identified by Glimmer3; putative; protein MET17 complement(1887381..1888661) Aggregatibacter aphrophilus NJ8700 8121467 YP_003008311.1 CDS NT05HA_1900 NC_012913.1 1888885 1889445 D identified by Glimmer3; putative; lipoprotein 1888885..1889445 Aggregatibacter aphrophilus NJ8700 8121468 YP_003008312.1 CDS NT05HA_1901 NC_012913.1 1889448 1890614 D identified by Glimmer3; putative; glutathionylspermidine synthase 1889448..1890614 Aggregatibacter aphrophilus NJ8700 8121469 YP_003008313.1 CDS NT05HA_1902 NC_012913.1 1890724 1891041 R identified by Glimmer3; putative; dsbh domain containing protein complement(1890724..1891041) Aggregatibacter aphrophilus NJ8700 8121470 YP_003008314.1 CDS NT05HA_1903 NC_012913.1 1891057 1894014 R has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I complement(1891057..1894014) Aggregatibacter aphrophilus NJ8700 8121471 YP_003008315.1 CDS NT05HA_1904 NC_012913.1 1894071 1894628 D identified by Glimmer3; putative; outer membrane protein 18/16 1894071..1894628 Aggregatibacter aphrophilus NJ8700 8121472 YP_003008316.1 CDS NT05HA_1905 NC_012913.1 1894740 1894970 D identified by Glimmer3; putative; hypothetical protein 1894740..1894970 Aggregatibacter aphrophilus NJ8700 8121473 YP_003008317.1 CDS NT05HA_1906 NC_012913.1 1894980 1896995 D identified by Glimmer3; putative; ATP-dependent DNA helicase Rep 1894980..1896995 Aggregatibacter aphrophilus NJ8700 8121474 YP_003008318.1 CDS NT05HA_1910 NC_012913.1 1897510 1897890 R identified by Glimmer3; putative; S-ribosylhomocysteinase complement(1897510..1897890) Aggregatibacter aphrophilus NJ8700 8121958 YP_003008319.1 CDS NT05HA_1911 NC_012913.1 1898020 1898628 D identified by Glimmer3; putative; phosphatase YqaB 1898020..1898628 Aggregatibacter aphrophilus NJ8700 8121959 YP_003008320.1 CDS NT05HA_1912 NC_012913.1 1898622 1899236 D identified by Glimmer3; putative; galactoside O-acetyltransferase 1898622..1899236 Aggregatibacter aphrophilus NJ8700 8121960 YP_003008321.1 CDS NT05HA_1913 NC_012913.1 1899229 1899696 D identified by Glimmer3; putative; glucose-inhibited division protein B 1899229..1899696 Aggregatibacter aphrophilus NJ8700 8121961 YP_003008322.1 CDS NT05HA_1914 NC_012913.1 1899916 1900422 D catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase 1899916..1900422 Aggregatibacter aphrophilus NJ8700 8121962 YP_003008323.1 CDS purT NC_012913.1 1900440 1901621 D non-folate utilizing enzyme, catalyzes the production of beta-formyl glycinamide ribonucleotide from formate, ATP, and beta-GAR and a side reaction producing acetyl phosphate and ADP from acetate and ATP; involved in de novo purine biosynthesis; phosphoribosylglycinamide formyltransferase 2 1900440..1901621 Aggregatibacter aphrophilus NJ8700 8121963 YP_003008324.1 CDS NT05HA_1916 NC_012913.1 1901911 1902147 D identified by Glimmer3; putative; 17 kDa surface antigen 1901911..1902147 Aggregatibacter aphrophilus NJ8700 8121964 YP_003008325.1 CDS NT05HA_1917 NC_012913.1 1902454 1902855 R identified by Glimmer3; putative; endonuclease V complement(1902454..1902855) Aggregatibacter aphrophilus NJ8700 8121965 YP_003008326.1 CDS NT05HA_1918 NC_012913.1 1903048 1904343 R identified by Glimmer3; putative; patatin complement(1903048..1904343) Aggregatibacter aphrophilus NJ8700 8121966 YP_003008327.1 CDS NT05HA_1919 NC_012913.1 1904649 1905320 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 1904649..1905320 Aggregatibacter aphrophilus NJ8700 8121967 YP_003008328.1 CDS NT05HA_1920 NC_012913.1 1905345 1906094 D identified by Glimmer3; putative; deoxyribose operon repressor 1905345..1906094 Aggregatibacter aphrophilus NJ8700 8121968 YP_003008329.1 CDS NT05HA_1921 NC_012913.1 1906203 1907738 D identified by Glimmer3; putative; putative Mg chelatase-like protein 1906203..1907738 Aggregatibacter aphrophilus NJ8700 8121969 YP_003008330.1 CDS NT05HA_1922 NC_012913.1 1907755 1907874 R identified by Glimmer3; putative; hypothetical protein complement(1907755..1907874) Aggregatibacter aphrophilus NJ8700 8121970 YP_003008331.1 CDS NT05HA_1923 NC_012913.1 1908276 1908644 D identified by Glimmer3; putative; hypothetical protein 1908276..1908644 Aggregatibacter aphrophilus NJ8700 8121971 YP_003008332.1 CDS NT05HA_1924 NC_012913.1 1908746 1909159 D identified by Glimmer3; putative; hypothetical protein 1908746..1909159 Aggregatibacter aphrophilus NJ8700 8121972 YP_003008333.1 CDS NT05HA_1925 NC_012913.1 1909324 1909602 D identified by Glimmer3; putative; hypothetical protein 1909324..1909602 Aggregatibacter aphrophilus NJ8700 8121973 YP_003008334.1 CDS NT05HA_1926 NC_012913.1 1909835 1911244 D identified by Glimmer3; putative; putative peptidoglycan binding domain-containing protein 1909835..1911244 Aggregatibacter aphrophilus NJ8700 8121974 YP_003008335.1 CDS NT05HA_1927 NC_012913.1 1911262 1912347 D identified by Glimmer3; putative; Sel1 repeat family 1911262..1912347 Aggregatibacter aphrophilus NJ8700 8121975 YP_003008336.1 CDS NT05HA_1928 NC_012913.1 1912369 1912851 D identified by Glimmer3; putative; pentapeptide repeat protein 1912369..1912851 Aggregatibacter aphrophilus NJ8700 8121976 YP_003008337.1 CDS NT05HA_1929 NC_012913.1 1912914 1913819 R identified by Glimmer3; putative; divergent polysaccharide deacetylase superfamily protein complement(1912914..1913819) Aggregatibacter aphrophilus NJ8700 8121977 YP_003008338.1 CDS NT05HA_1930 NC_012913.1 1913816 1915114 R identified by Glimmer3; putative; NlpD protein complement(1913816..1915114) Aggregatibacter aphrophilus NJ8700 8121978 YP_003008339.1 CDS NT05HA_1931 NC_012913.1 1915131 1915259 R identified by Glimmer3; putative; hypothetical protein complement(1915131..1915259) Aggregatibacter aphrophilus NJ8700 8121979 YP_003008340.1 CDS NT05HA_1932 NC_012913.1 1915306 1916169 D identified by Glimmer3; putative; inner membrane protein YedI 1915306..1916169 Aggregatibacter aphrophilus NJ8700 8121980 YP_003008342.1 CDS NT05HA_1936 NC_012913.1 1922258 1923211 D identified by Glimmer3; putative; transaldolase B 1922258..1923211 Aggregatibacter aphrophilus NJ8700 8121986 YP_003008343.1 CDS NT05HA_1937 NC_012913.1 1923345 1925342 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 1923345..1925342 Aggregatibacter aphrophilus NJ8700 8121987 YP_003008344.1 CDS NT05HA_1938 NC_012913.1 1925517 1925870 D PliC; periplasmic lysozyme inhibitor of c-type lysozyme; lysozyme inhibitor 1925517..1925870 Aggregatibacter aphrophilus NJ8700 8121988 YP_003008345.1 CDS NT05HA_1939 NC_012913.1 1925944 1926333 R identified by Glimmer3; putative; endoribonuclease L-PSP complement(1925944..1926333) Aggregatibacter aphrophilus NJ8700 8121989 YP_003008346.1 CDS recX NC_012913.1 1926417 1926875 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(1926417..1926875) Aggregatibacter aphrophilus NJ8700 8121990 YP_003008347.1 CDS recA NC_012913.1 1926954 1928015 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(1926954..1928015) Aggregatibacter aphrophilus NJ8700 8121991 YP_003008348.1 CDS NT05HA_1942 NC_012913.1 1928150 1930075 R identified by Glimmer3; putative; ABC transporter ATP-binding protein complement(1928150..1930075) Aggregatibacter aphrophilus NJ8700 8121992 YP_003008349.1 CDS NT05HA_1943 NC_012913.1 1930156 1930773 D identified by Glimmer3; putative; hypothetical protein 1930156..1930773 Aggregatibacter aphrophilus NJ8700 8121993 YP_003008350.1 CDS NT05HA_1944 NC_012913.1 1930989 1931348 R identified by Glimmer3; putative; RhtB protein complement(1930989..1931348) Aggregatibacter aphrophilus NJ8700 8121994 YP_003008351.1 CDS NT05HA_1945 NC_012913.1 1931519 1931875 D identified by Glimmer3; putative; hypothetical protein 1931519..1931875 Aggregatibacter aphrophilus NJ8700 8121995 YP_003008352.1 CDS NT05HA_1946 NC_012913.1 1932640 1932783 D identified by Glimmer3; putative; hypothetical protein 1932640..1932783 Aggregatibacter aphrophilus NJ8700 8121996 YP_003008353.1 CDS NT05HA_1947 NC_012913.1 1933003 1934007 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(1933003..1934007) Aggregatibacter aphrophilus NJ8700 8121997 YP_003008354.1 CDS NT05HA_1948 NC_012913.1 1934129 1934803 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(1934129..1934803) Aggregatibacter aphrophilus NJ8700 8121998 YP_003008355.1 CDS NT05HA_1949 NC_012913.1 1934806 1935480 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(1934806..1935480) Aggregatibacter aphrophilus NJ8700 8121999 YP_003008356.1 CDS ftsB NC_012913.1 1935613 1935909 D forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 1935613..1935909 Aggregatibacter aphrophilus NJ8700 8122000 YP_003008357.1 CDS ispD NC_012913.1 1935909 1936604 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 1935909..1936604 Aggregatibacter aphrophilus NJ8700 8122001 YP_003008358.1 CDS NT05HA_1952 NC_012913.1 1936601 1937080 D identified by Glimmer3; putative; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 1936601..1937080 Aggregatibacter aphrophilus NJ8700 8122002 YP_003008359.1 CDS truD NC_012913.1 1937077 1938090 D catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 1937077..1938090 Aggregatibacter aphrophilus NJ8700 8122003 YP_003008360.1 CDS surE NC_012913.1 1938113 1938853 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 1938113..1938853 Aggregatibacter aphrophilus NJ8700 8122004 YP_003008361.1 CDS NT05HA_1955 NC_012913.1 1938882 1939457 D identified by Glimmer3; putative; lipoprotein B 1938882..1939457 Aggregatibacter aphrophilus NJ8700 8122005 YP_003008362.1 CDS NT05HA_1956 NC_012913.1 1939471 1939659 D identified by Glimmer3; putative; outer membrane antigenic lipoprotein B 1939471..1939659 Aggregatibacter aphrophilus NJ8700 8122006 YP_003008363.1 CDS NT05HA_1957 NC_012913.1 1939676 1940884 D identified by Glimmer3; putative; outer membrane antigenic lipoprotein B 1939676..1940884 Aggregatibacter aphrophilus NJ8700 8122007 YP_003008364.1 CDS NT05HA_1958 NC_012913.1 1941018 1941197 R identified by Glimmer3; putative; hypothetical protein complement(1941018..1941197) Aggregatibacter aphrophilus NJ8700 8122008 YP_003008365.1 CDS NT05HA_1959 NC_012913.1 1941322 1941984 R identified by Glimmer3; putative; hypothetical protein complement(1941322..1941984) Aggregatibacter aphrophilus NJ8700 8122009 YP_003008366.1 CDS NT05HA_1960 NC_012913.1 1942057 1942401 D identified by Glimmer3; putative; transcriptional regulator MerR family 1942057..1942401 Aggregatibacter aphrophilus NJ8700 8122010 YP_003008367.1 CDS NT05HA_1962 NC_012913.1 1942839 1944230 R identified by Glimmer3; putative; inner membrane transport protein YieO complement(1942839..1944230) Aggregatibacter aphrophilus NJ8700 8122012 YP_003008368.1 CDS NT05HA_1963 NC_012913.1 1944247 1944747 R identified by Glimmer3; putative; molybdopterin-guanine dinucleotide biosynthesis protein B complement(1944247..1944747) Aggregatibacter aphrophilus NJ8700 8122013 YP_003008369.1 CDS NT05HA_1964 NC_012913.1 1944823 1945260 R identified by Glimmer3; putative; RseC protein complement(1944823..1945260) Aggregatibacter aphrophilus NJ8700 8122014 YP_003008370.1 CDS rseB NC_012913.1 1945274 1946263 R periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE complement(1945274..1946263) Aggregatibacter aphrophilus NJ8700 8122015 YP_003008371.1 CDS NT05HA_1966 NC_012913.1 1946310 1946894 R identified by Glimmer3; putative; MclA complement(1946310..1946894) Aggregatibacter aphrophilus NJ8700 8122016 YP_003008372.1 CDS NT05HA_1967 NC_012913.1 1946936 1947511 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(1946936..1947511) Aggregatibacter aphrophilus NJ8700 8122017 YP_003008373.1 CDS NT05HA_1968 NC_012913.1 1947645 1947899 R identified by Glimmer3; putative; protein Plu3555 complement(1947645..1947899) Aggregatibacter aphrophilus NJ8700 8122018 YP_003008374.1 CDS NT05HA_1969 NC_012913.1 1947940 1948062 R identified by Glimmer3; putative; (Efflux-multidrug resistance protein emrE)(Methyl viologen resistance protein C) (Ethidium resistance protein); multidrug transporter EmrE complement(1947940..1948062) Aggregatibacter aphrophilus NJ8700 8122019 YP_003008375.1 CDS NT05HA_1970 NC_012913.1 1948217 1948348 D identified by Glimmer3; putative; prolyl-tRNA synthetase 1948217..1948348 Aggregatibacter aphrophilus NJ8700 8122020 YP_003008376.1 CDS NT05HA_1971 NC_012913.1 1948333 1950048 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(1948333..1950048) Aggregatibacter aphrophilus NJ8700 8122021 YP_003008377.1 CDS NT05HA_1972 NC_012913.1 1950201 1951595 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 1950201..1951595 Aggregatibacter aphrophilus NJ8700 8122022 YP_003008378.1 CDS NT05HA_1973 NC_012913.1 1951592 1953451 D identified by Glimmer3; putative; selenocysteine-specific translation elongation factor 1951592..1953451 Aggregatibacter aphrophilus NJ8700 8122023 YP_003008379.1 CDS NT05HA_1974 NC_012913.1 1953497 1954408 D identified by Glimmer3; putative; lipoprotein 1953497..1954408 Aggregatibacter aphrophilus NJ8700 8122024 YP_003008380.1 CDS NT05HA_1975 NC_012913.1 1954459 1955562 D identified by Glimmer3; putative; NADH-dependent flavin oxidoreductase 1954459..1955562 Aggregatibacter aphrophilus NJ8700 8122025 YP_003008381.1 CDS NT05HA_1976 NC_012913.1 1955679 1956395 R identified by Glimmer3; putative; protein SapB complement(1955679..1956395) Aggregatibacter aphrophilus NJ8700 8122026 YP_003008382.1 CDS NT05HA_1977 NC_012913.1 1956400 1956948 R identified by Glimmer3; putative; RNA pseudouridine synthase family protein complement(1956400..1956948) Aggregatibacter aphrophilus NJ8700 8122027 YP_003008383.1 CDS NT05HA_1978 NC_012913.1 1957421 1958920 D identified by Glimmer3; putative; sodium-dependent transporter 1957421..1958920 Aggregatibacter aphrophilus NJ8700 8122028 YP_003008384.1 CDS NT05HA_1979 NC_012913.1 1959203 1960093 D identified by Glimmer3; putative; hypothetical protein 1959203..1960093 Aggregatibacter aphrophilus NJ8700 8122029 YP_003008385.1 CDS NT05HA_1980 NC_012913.1 1960170 1961804 R identified by Glimmer3; putative; shikimate 5-dehydrogenase complement(1960170..1961804) Aggregatibacter aphrophilus NJ8700 8122030 YP_003008386.1 CDS NT05HA_1981 NC_012913.1 1961821 1963569 R identified by Glimmer3; putative; CydD complement(1961821..1963569) Aggregatibacter aphrophilus NJ8700 8122031 YP_003008387.1 CDS NT05HA_1982 NC_012913.1 1963748 1965070 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(1963748..1965070) Aggregatibacter aphrophilus NJ8700 8122032 YP_003008388.1 CDS NT05HA_1983 NC_012913.1 1965391 1965831 D identified by Glimmer3; putative; PspE protein 1965391..1965831 Aggregatibacter aphrophilus NJ8700 8122033 YP_003008389.1 CDS NT05HA_1984 NC_012913.1 1965846 1966349 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 1965846..1966349 Aggregatibacter aphrophilus NJ8700 8122034 YP_003008390.1 CDS NT05HA_1985 NC_012913.1 1966436 1967449 D identified by Glimmer3; putative; (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase) (NAD(P)H-dependentdihydroxyacetone-phosphate reductase); glycerol-3-phosphate dehydrogenase 1966436..1967449 Aggregatibacter aphrophilus NJ8700 8123144 YP_003008391.1 CDS NT05HA_1986 NC_012913.1 1967453 1968250 D identified by Glimmer3; putative; serine acetyltransferase 1 1967453..1968250 Aggregatibacter aphrophilus NJ8700 8123145 YP_003008392.1 CDS NT05HA_1987 NC_012913.1 1968367 1968789 D identified by Glimmer3; putative; lipoprotein 1968367..1968789 Aggregatibacter aphrophilus NJ8700 8123146 YP_003008393.1 CDS glpX NC_012913.1 1968836 1969849 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(1968836..1969849) Aggregatibacter aphrophilus NJ8700 8123147 YP_003008394.1 CDS NT05HA_1989 NC_012913.1 1970046 1970264 D identified by Glimmer3; putative; transcriptional regulator 1970046..1970264 Aggregatibacter aphrophilus NJ8700 8123148 YP_003008395.1 CDS NT05HA_1990 NC_012913.1 1970320 1970763 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 1970320..1970763 Aggregatibacter aphrophilus NJ8700 8123149 YP_003008396.1 CDS NT05HA_1991 NC_012913.1 1971234 1973123 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 1971234..1973123 Aggregatibacter aphrophilus NJ8700 8123150 YP_003008397.1 CDS gidB NC_012913.1 1973123 1973755 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 1973123..1973755 Aggregatibacter aphrophilus NJ8700 8123151 YP_003008398.1 CDS NT05HA_1993 NC_012913.1 1973881 1974255 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 1973881..1974255 Aggregatibacter aphrophilus NJ8700 8123152 YP_003008399.1 CDS NT05HA_1994 NC_012913.1 1974283 1975071 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 1974283..1975071 Aggregatibacter aphrophilus NJ8700 8123153 YP_003008400.1 CDS NT05HA_1995 NC_012913.1 1975122 1975376 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 1975122..1975376 Aggregatibacter aphrophilus NJ8700 8123154 YP_003008401.1 CDS NT05HA_1996 NC_012913.1 1975426 1975896 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 1975426..1975896 Aggregatibacter aphrophilus NJ8700 8123155 YP_003008402.1 CDS NT05HA_1997 NC_012913.1 1975910 1976458 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 1975910..1976458 Aggregatibacter aphrophilus NJ8700 8123156 YP_003008403.1 CDS NT05HA_1998 NC_012913.1 1976471 1978012 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1976471..1978012 Aggregatibacter aphrophilus NJ8700 8123157 YP_003008404.1 CDS NT05HA_1999 NC_012913.1 1978028 1978897 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 1978028..1978897 Aggregatibacter aphrophilus NJ8700 8123158 YP_003008405.1 CDS NT05HA_2000 NC_012913.1 1978914 1980287 D identified by Glimmer3; putative; ATP synthase F1 subunit beta 1978914..1980287 Aggregatibacter aphrophilus NJ8700 8123159 YP_003008406.1 CDS atpC NC_012913.1 1980329 1980757 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 1980329..1980757 Aggregatibacter aphrophilus NJ8700 8123160 YP_003008407.1 CDS NT05HA_2002 NC_012913.1 1980881 1981441 R identified by Glimmer3; putative; hypothetical protein complement(1980881..1981441) Aggregatibacter aphrophilus NJ8700 8123161 YP_003008408.1 CDS NT05HA_2003 NC_012913.1 1981443 1982501 R identified by Glimmer3; putative; lipopolysaccharide heptosyltransferase II complement(1981443..1982501) Aggregatibacter aphrophilus NJ8700 8123162 YP_003008409.1 CDS NT05HA_2004 NC_012913.1 1982586 1983509 R identified by Glimmer3; putative; ADP-glyceromanno-heptose 6-epimerase complement(1982586..1983509) Aggregatibacter aphrophilus NJ8700 8123163 YP_003008410.1 CDS NT05HA_2005 NC_012913.1 1983762 1984532 D identified by Glimmer3; putative; hypothetical protein 1983762..1984532 Aggregatibacter aphrophilus NJ8700 8123164 YP_003008411.1 CDS NT05HA_2006 NC_012913.1 1984559 1986373 D identified by Glimmer3; putative; NAD nucleotidase 1984559..1986373 Aggregatibacter aphrophilus NJ8700 8123165 YP_003008412.1 CDS NT05HA_2007 NC_012913.1 1986567 1987193 R negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR complement(1986567..1987193) Aggregatibacter aphrophilus NJ8700 8123166 YP_003008413.1 CDS NT05HA_2008 NC_012913.1 1987205 1988101 R Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR complement(1987205..1988101) Aggregatibacter aphrophilus NJ8700 8123167 YP_003008414.1 CDS NT05HA_2009 NC_012913.1 1988259 1988987 D identified by Glimmer3; putative; hybrid peroxiredoxin hyPrx5 1988259..1988987 Aggregatibacter aphrophilus NJ8700 8123168 YP_003008415.1 CDS NT05HA_2010 NC_012913.1 1989152 1991047 D catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase 1989152..1991047 Aggregatibacter aphrophilus NJ8700 8123169 YP_003008416.1 CDS NT05HA_2011 NC_012913.1 1991134 1991769 R identified by Glimmer3; putative; cytochrome c-type protein TorC complement(1991134..1991769) Aggregatibacter aphrophilus NJ8700 8123170 YP_003008417.1 CDS NT05HA_2012 NC_012913.1 1991783 1992232 R identified by Glimmer3; putative; periplasmiC nitrate reductase, diheme cytochrome c subunit complement(1991783..1992232) Aggregatibacter aphrophilus NJ8700 8123171 YP_003008418.1 CDS napH NC_012913.1 1992265 1993146 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component complement(1992265..1993146) Aggregatibacter aphrophilus NJ8700 8123172 YP_003008419.1 CDS napG NC_012913.1 1993146 1994021 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component complement(1993146..1994021) Aggregatibacter aphrophilus NJ8700 8123173 YP_003008420.1 CDS NT05HA_2015 NC_012913.1 1994029 1996509 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(1994029..1996509) Aggregatibacter aphrophilus NJ8700 8123174 YP_003008421.1 CDS NT05HA_2016 NC_012913.1 1996541 1996825 R identified by Glimmer3; putative; NapD protein complement(1996541..1996825) Aggregatibacter aphrophilus NJ8700 8123175 YP_003008422.1 CDS NT05HA_2017 NC_012913.1 1997122 1998828 D identified by Glimmer3; putative; nitrate/nitrite sensor protein NarQ 1997122..1998828 Aggregatibacter aphrophilus NJ8700 8123176 YP_003008423.1 CDS murB NC_012913.1 1998841 1999866 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 1998841..1999866 Aggregatibacter aphrophilus NJ8700 8123177 YP_003008424.1 CDS NT05HA_2019 NC_012913.1 1999896 2000204 D identified by Glimmer3; putative; RNA polymerase factor sigma-32 1999896..2000204 Aggregatibacter aphrophilus NJ8700 8123178 YP_003008425.1 CDS NT05HA_2020 NC_012913.1 2000204 2001157 D identified by Glimmer3; putative; potassium-tellurite ethidium and proflavin transporter 2000204..2001157 Aggregatibacter aphrophilus NJ8700 8123179 YP_003008426.1 CDS NT05HA_2021 NC_012913.1 2001295 2002143 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 2001295..2002143 Aggregatibacter aphrophilus NJ8700 8123180 YP_003008427.1 CDS NT05HA_2022 NC_012913.1 2002216 2003676 R identified by Glimmer3; putative; (Xaa-His dipeptidase)(X-His dipeptidase) (Beta-alanyl-histidine dipeptidase) (Carnosinase)(Cysteinylglycinase) (Peptidase D); aminoacyl-histidine dipeptidase complement(2002216..2003676) Aggregatibacter aphrophilus NJ8700 8123181 YP_003008428.1 CDS NT05HA_2023 NC_012913.1 2003716 2004255 D identified by Glimmer3; putative;(xanthine-guaninephosphoribosyltransferase) (xgprt); xanthine phosphoribosyltransferase 2003716..2004255 Aggregatibacter aphrophilus NJ8700 8123182 YP_003008429.1 CDS lldD NC_012913.1 2004518 2005663 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 2004518..2005663 Aggregatibacter aphrophilus NJ8700 8123183 YP_003008430.1 CDS NT05HA_2025 NC_012913.1 2005695 2005808 D identified by Glimmer3; putative; LPS-assembly protein 2005695..2005808 Aggregatibacter aphrophilus NJ8700 8123184 YP_003008431.1 CDS NT05HA_2026 NC_012913.1 2005785 2008130 R determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein complement(2005785..2008130) Aggregatibacter aphrophilus NJ8700 8123185 YP_003008432.1 CDS NT05HA_2027 NC_012913.1 2008215 2008781 R identified by Glimmer3; putative; (dna-3-methyladenineglycosylase i) (3-methyladenine-dna glycosylase i, constitutive) (tagi) (dna-3-methyladenine glycosidase i); dna-3-methyladenine glycosylase 1 complement(2008215..2008781) Aggregatibacter aphrophilus NJ8700 8123186 YP_003008433.1 CDS NT05HA_2028 NC_012913.1 2008923 2009066 D identified by Glimmer3; putative; hypothetical protein 2008923..2009066 Aggregatibacter aphrophilus NJ8700 8123187 YP_003008434.1 CDS NT05HA_2029 NC_012913.1 2009050 2009652 D identified by Glimmer3; putative; inner membrane protein 2009050..2009652 Aggregatibacter aphrophilus NJ8700 8123188 YP_003008435.1 CDS NT05HA_2030 NC_012913.1 2009698 2010948 R identified by Glimmer3; putative; diaminopimelate decarboxylase complement(2009698..2010948) Aggregatibacter aphrophilus NJ8700 8123189 YP_003008436.1 CDS NT05HA_2031 NC_012913.1 2010984 2011097 R identified by Glimmer3; putative; lipoprotein complement(2010984..2011097) Aggregatibacter aphrophilus NJ8700 8123190 YP_003008437.1 CDS cyaY NC_012913.1 2011220 2011528 D defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein 2011220..2011528 Aggregatibacter aphrophilus NJ8700 8123191 YP_003008438.1 CDS NT05HA_2033 NC_012913.1 2011528 2013423 D identified by Glimmer3; putative; ATP-dependent DNA helicase RecQ 2011528..2013423 Aggregatibacter aphrophilus NJ8700 8123192 YP_003008439.1 CDS gyrB NC_012913.1 2013546 2015966 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B 2013546..2015966 Aggregatibacter aphrophilus NJ8700 8123193 YP_003008440.1 CDS NT05HA_2035 NC_012913.1 2016028 2016981 R catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase complement(2016028..2016981) Aggregatibacter aphrophilus NJ8700 8123194 YP_003008441.1 CDS NT05HA_2040 NC_012913.1 2017674 2018858 D identified by Glimmer3; putative; translation elongation factor Tu 2017674..2018858 Aggregatibacter aphrophilus NJ8700 8123199 YP_003008442.1 CDS NT05HA_2041 NC_012913.1 2019095 2019862 R identified by Glimmer3; putative; L-cystine import ATP-binding protein TcyN complement(2019095..2019862) Aggregatibacter aphrophilus NJ8700 8123200 YP_003008443.1 CDS NT05HA_2042 NC_012913.1 2019875 2020552 R identified by Glimmer3; putative; glutamine-binding periplasmic protein/glutamine transport system permease complement(2019875..2020552) Aggregatibacter aphrophilus NJ8700 8123201 YP_003008444.1 CDS NT05HA_2043 NC_012913.1 2020575 2021354 R identified by Glimmer3; putative; L-cystine-binding protein TcyA complement(2020575..2021354) Aggregatibacter aphrophilus NJ8700 8123202 YP_003008445.1 CDS NT05HA_2044 NC_012913.1 2021478 2022773 R identified by Glimmer3; putative; (Gamma-glutamylputrescine oxidase) (Gamma-Glu-Put oxidase); gamma-glutamylputrescine oxidoreductase complement(2021478..2022773) Aggregatibacter aphrophilus NJ8700 8123203 YP_003008446.1 CDS NT05HA_2045 NC_012913.1 2022953 2023174 R identified by Glimmer3; putative; hypothetical protein complement(2022953..2023174) Aggregatibacter aphrophilus NJ8700 8123204 YP_003008447.1 CDS NT05HA_2046 NC_012913.1 2023263 2023991 D identified by Glimmer3; putative; fkbp-type peptidyl-prolyl cis-trans isomerase fkpa 2023263..2023991 Aggregatibacter aphrophilus NJ8700 8123205 YP_003008448.1 CDS NT05HA_2047 NC_012913.1 2024070 2024738 D identified by Glimmer3; putative; DNA-binding protein 2024070..2024738 Aggregatibacter aphrophilus NJ8700 8123206 YP_003008449.1 CDS NT05HA_2048 NC_012913.1 2024742 2025119 D in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD 2024742..2025119 Aggregatibacter aphrophilus NJ8700 8123207 YP_003008450.1 CDS NT05HA_2049 NC_012913.1 2025116 2025478 D identified by Glimmer3; putative; sulfur relay protein TusC/DsrF 2025116..2025478 Aggregatibacter aphrophilus NJ8700 8123208 YP_003008451.1 CDS NT05HA_2050 NC_012913.1 2025481 2025768 D identified by Glimmer3; putative; sulfur relay protein TusB/DsrH 2025481..2025768 Aggregatibacter aphrophilus NJ8700 8123209 YP_003008452.1 CDS NT05HA_2051 NC_012913.1 2025801 2026832 R identified by Glimmer3; putative; Zn-dependent hydrolase complement(2025801..2026832) Aggregatibacter aphrophilus NJ8700 8123210 YP_003008453.1 CDS NT05HA_2052 NC_012913.1 2027104 2027535 D identified by Glimmer3; putative; diguanylate cyclase 2027104..2027535 Aggregatibacter aphrophilus NJ8700 8123211 YP_003008454.1 CDS NT05HA_2053 NC_012913.1 2027609 2029171 D identified by Glimmer3; putative; sulfite reductase [NADPH] flavoprotein subunit alpha 2027609..2029171 Aggregatibacter aphrophilus NJ8700 8123212 YP_003008455.1 CDS NT05HA_2054 NC_012913.1 2029500 2032238 D identified by Glimmer3; putative; hypothetical protein 2029500..2032238 Aggregatibacter aphrophilus NJ8700 8123213 YP_003008456.1 CDS NT05HA_2055 NC_012913.1 2032235 2032462 D identified by Glimmer3; putative; hypothetical protein 2032235..2032462 Aggregatibacter aphrophilus NJ8700 8123214 YP_003008457.1 CDS NT05HA_2056 NC_012913.1 2032528 2033256 D identified by Glimmer3; putative; NAD 2032528..2033256 Aggregatibacter aphrophilus NJ8700 8123215 YP_003008458.1 CDS NT05HA_2057 NC_012913.1 2033262 2033417 D identified by Glimmer3; putative; hypothetical protein 2033262..2033417 Aggregatibacter aphrophilus NJ8700 8123216 YP_003008459.1 CDS NT05HA_2058 NC_012913.1 2033459 2033662 D identified by Glimmer3; putative; hypothetical protein 2033459..2033662 Aggregatibacter aphrophilus NJ8700 8123217 YP_003008460.1 CDS NT05HA_2059 NC_012913.1 2033682 2033939 D identified by Glimmer3; putative; hypothetical protein 2033682..2033939 Aggregatibacter aphrophilus NJ8700 8123218 YP_003008461.1 CDS NT05HA_2060 NC_012913.1 2034031 2035197 D identified by Glimmer3; putative; spermidine/putrescine-binding periplasmic protein 2 2034031..2035197 Aggregatibacter aphrophilus NJ8700 8123219 YP_003008462.1 CDS NT05HA_2061 NC_012913.1 2035173 2035286 D identified by Glimmer3; putative; protein in Tap1-dppD intergenic region 2035173..2035286 Aggregatibacter aphrophilus NJ8700 8123220 YP_003008463.1 CDS NT05HA_2062 NC_012913.1 2035265 2036014 R identified by Glimmer3; putative; hypothetical protein complement(2035265..2036014) Aggregatibacter aphrophilus NJ8700 8123221 YP_003008464.1 CDS NT05HA_2063 NC_012913.1 2036067 2036909 R identified by Glimmer3; putative; SIR2 family protein complement(2036067..2036909) Aggregatibacter aphrophilus NJ8700 8123222 YP_003008465.1 CDS NT05HA_2064 NC_012913.1 2037062 2037910 R identified by Glimmer3; putative; hypothetical protein complement(2037062..2037910) Aggregatibacter aphrophilus NJ8700 8123223 YP_003008466.1 CDS NT05HA_2065 NC_012913.1 2038067 2038432 D identified by Glimmer3; putative; HxlR family transcriptional regulator 2038067..2038432 Aggregatibacter aphrophilus NJ8700 8121795 YP_003008467.1 CDS NT05HA_2067 NC_012913.1 2038453 2038611 R identified by Glimmer3; putative; glycyl-tRNA synthetase subunit alpha complement(2038453..2038611) Aggregatibacter aphrophilus NJ8700 8121796 YP_003008468.1 CDS glyQ NC_012913.1 2038577 2039482 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 2038577..2039482 Aggregatibacter aphrophilus NJ8700 8121797 YP_003008469.1 CDS NT05HA_2068 NC_012913.1 2039560 2039748 D identified by Glimmer3; putative; hypothetical protein 2039560..2039748 Aggregatibacter aphrophilus NJ8700 8121798 YP_003008470.1 CDS NT05HA_2069 NC_012913.1 2039742 2041058 D identified by Glimmer3; putative; glucose-1-phosphatase 2039742..2041058 Aggregatibacter aphrophilus NJ8700 8121799 YP_003008471.1 CDS NT05HA_2070 NC_012913.1 2041314 2041445 D identified by Glimmer3; putative; hypothetical protein 2041314..2041445 Aggregatibacter aphrophilus NJ8700 8121800 YP_003008472.1 CDS NT05HA_2071 NC_012913.1 2041426 2041827 D identified by Glimmer3; putative; hypothetical protein 2041426..2041827 Aggregatibacter aphrophilus NJ8700 8121801 YP_003008473.1 CDS glyS NC_012913.1 2041908 2043974 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 2041908..2043974 Aggregatibacter aphrophilus NJ8700 8121802 YP_003008474.1 CDS NT05HA_2073 NC_012913.1 2044083 2045105 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(2044083..2045105) Aggregatibacter aphrophilus NJ8700 8121803 YP_003008475.1 CDS NT05HA_2074 NC_012913.1 2045124 2045891 R identified by Glimmer3; putative; twin arginine-targeting protein translocase TatC complement(2045124..2045891) Aggregatibacter aphrophilus NJ8700 8121804 YP_003008476.1 CDS NT05HA_2075 NC_012913.1 2045918 2046571 R identified by Glimmer3; putative; sec-independent translocase complement(2045918..2046571) Aggregatibacter aphrophilus NJ8700 8121805 YP_003008477.1 CDS NT05HA_2076 NC_012913.1 2046575 2046805 R identified by Glimmer3; putative; hypothetical protein complement(2046575..2046805) Aggregatibacter aphrophilus NJ8700 8121806 YP_003008478.1 CDS NT05HA_2079 NC_012913.1 2048581 2049222 R identified by Glimmer3; putative; hypothetical protein complement(2048581..2049222) Aggregatibacter aphrophilus NJ8700 8121808 YP_003008479.1 CDS NT05HA_2080 NC_012913.1 2049231 2050049 R identified by Glimmer3; putative; ubiquinone/menaquinone biosynthesis methyltransferase UbiE complement(2049231..2050049) Aggregatibacter aphrophilus NJ8700 8121809 YP_003008480.1 CDS NT05HA_2081 NC_012913.1 2050046 2050195 R identified by Glimmer3; putative; hypothetical protein complement(2050046..2050195) Aggregatibacter aphrophilus NJ8700 8121810 YP_003008481.1 CDS hslO NC_012913.1 2050355 2051227 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(2050355..2051227) Aggregatibacter aphrophilus NJ8700 8121811 YP_003008482.1 CDS NT05HA_2083 NC_012913.1 2051296 2051709 R identified by Glimmer3; putative; heat shock protein 15 complement(2051296..2051709) Aggregatibacter aphrophilus NJ8700 8121812 YP_003008483.1 CDS NT05HA_2084 NC_012913.1 2051723 2052379 R identified by Glimmer3; putative; HAD-superfamily hydrolase complement(2051723..2052379) Aggregatibacter aphrophilus NJ8700 8121813 YP_003008484.1 CDS nudE NC_012913.1 2052459 2053010 D ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 2052459..2053010 Aggregatibacter aphrophilus NJ8700 8121814 YP_003008485.1 CDS NT05HA_2086 NC_012913.1 2053031 2053912 R identified by Glimmer3; putative; histidine kinase complement(2053031..2053912) Aggregatibacter aphrophilus NJ8700 8121815 YP_003008486.1 CDS NT05HA_2087 NC_012913.1 2053983 2054609 R identified by Glimmer3; putative; hypothetical protein complement(2053983..2054609) Aggregatibacter aphrophilus NJ8700 8121816 YP_003008487.1 CDS NT05HA_2088 NC_012913.1 2054977 2056983 D identified by Glimmer3; putative; oligopeptide transporter 2054977..2056983 Aggregatibacter aphrophilus NJ8700 8121817 YP_003008488.1 CDS NT05HA_2089 NC_012913.1 2057047 2057475 D identified by Glimmer3; putative; hypothetical protein 2057047..2057475 Aggregatibacter aphrophilus NJ8700 8121818 YP_003008489.1 CDS NT05HA_2090 NC_012913.1 2057501 2058310 D identified by Glimmer3; putative; 3'(2'),5'-bisphosphate nucleotidase 2057501..2058310 Aggregatibacter aphrophilus NJ8700 8121819 YP_003008490.1 CDS NT05HA_2091 NC_012913.1 2058385 2059869 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 2058385..2059869 Aggregatibacter aphrophilus NJ8700 8121820 YP_003008491.1 CDS NT05HA_2092 NC_012913.1 2059957 2060655 D identified by Glimmer3; putative; 6-phosphogluconolactonase 2059957..2060655 Aggregatibacter aphrophilus NJ8700 8121821 YP_003008492.1 CDS NT05HA_2093 NC_012913.1 2060690 2061082 D identified by Glimmer3; putative; GNAT family acetyltransferase 2060690..2061082 Aggregatibacter aphrophilus NJ8700 8121822 YP_003008493.1 CDS NT05HA_2094 NC_012913.1 2061212 2061670 D identified by Glimmer3; putative; virulence-associated protein D 2061212..2061670 Aggregatibacter aphrophilus NJ8700 8121823 YP_003008494.1 CDS NT05HA_2095 NC_012913.1 2062650 2064104 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 2062650..2064104 Aggregatibacter aphrophilus NJ8700 8121824 YP_003008495.1 CDS NT05HA_2096 NC_012913.1 2064181 2064498 D identified by Glimmer3; putative; hypothetical protein 2064181..2064498 Aggregatibacter aphrophilus NJ8700 8121825 YP_003008496.1 CDS NT05HA_2097 NC_012913.1 2064681 2064872 D identified by Glimmer3; putative; 4-hydroxybenzoate octaprenyltransferase 2064681..2064872 Aggregatibacter aphrophilus NJ8700 8121826 YP_003008497.1 CDS NT05HA_2098 NC_012913.1 2064824 2065495 D identified by Glimmer3; putative; 4-hydroxybenzoate polyprenyl transferase 2064824..2065495 Aggregatibacter aphrophilus NJ8700 8121827 YP_003008498.1 CDS NT05HA_2099 NC_012913.1 2065590 2067866 D identified by Glimmer3; putative; hemoglobin receptor 2065590..2067866 Aggregatibacter aphrophilus NJ8700 8121828 YP_003008499.1 CDS aphA NC_012913.1 2067952 2068659 R Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; acid phosphatase/phosphotransferase complement(2067952..2068659) Aggregatibacter aphrophilus NJ8700 8121829 YP_003008500.1 CDS NT05HA_2101 NC_012913.1 2068877 2069401 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 2068877..2069401 Aggregatibacter aphrophilus NJ8700 8121830 YP_003008501.1 CDS NT05HA_2102 NC_012913.1 2069401 2069718 D identified by Glimmer3; putative; SugE protein 2069401..2069718 Aggregatibacter aphrophilus NJ8700 8121831 YP_003008502.1 CDS hslU NC_012913.1 2069737 2071068 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU 2069737..2071068 Aggregatibacter aphrophilus NJ8700 8121832 YP_003008503.1 CDS NT05HA_2104 NC_012913.1 2071657 2073222 D identified by Glimmer3; putative; nickel ABC transporter periplasmic nickel-binding protein 2071657..2073222 Aggregatibacter aphrophilus NJ8700 8121833 YP_003008504.1 CDS NT05HA_2105 NC_012913.1 2073336 2074112 D identified by Glimmer3; putative; lipoprotein VacJ 2073336..2074112 Aggregatibacter aphrophilus NJ8700 8121834 YP_003008505.1 CDS NT05HA_2106 NC_012913.1 2074126 2074620 D identified by Glimmer3; putative; hypothetical protein 2074126..2074620 Aggregatibacter aphrophilus NJ8700 8121835 YP_003008506.1 CDS gpmA NC_012913.1 2074692 2075375 R 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase complement(2074692..2075375) Aggregatibacter aphrophilus NJ8700 8121836 YP_003008507.1 CDS NT05HA_2108 NC_012913.1 2075674 2077332 D identified by Glimmer3; putative; phosphoglucomutase/phosphomannomutase 2075674..2077332 Aggregatibacter aphrophilus NJ8700 8121837 YP_003008508.1 CDS NT05HA_2109 NC_012913.1 2077549 2077854 R identified by Glimmer3; putative; ABC transporter permease complement(2077549..2077854) Aggregatibacter aphrophilus NJ8700 8121838 YP_003008509.1 CDS NT05HA_2110 NC_012913.1 2077844 2078275 R identified by Glimmer3; putative; hypothetical protein complement(2077844..2078275) Aggregatibacter aphrophilus NJ8700 8121839 YP_003008510.1 CDS NT05HA_2111 NC_012913.1 2079093 2080307 R identified by Glimmer3; putative; hypothetical protein complement(2079093..2080307) Aggregatibacter aphrophilus NJ8700 8121840 YP_003008511.1 CDS NT05HA_2112 NC_012913.1 2080311 2080658 R identified by Glimmer3; putative; hypothetical protein complement(2080311..2080658) Aggregatibacter aphrophilus NJ8700 8121841 YP_003008512.1 CDS NT05HA_2113 NC_012913.1 2080744 2081142 R identified by Glimmer3; putative; hypothetical protein complement(2080744..2081142) Aggregatibacter aphrophilus NJ8700 8121842 YP_003008513.1 CDS NT05HA_2114 NC_012913.1 2081105 2081911 R identified by Glimmer3; putative; hypothetical protein complement(2081105..2081911) Aggregatibacter aphrophilus NJ8700 8121843 YP_003008514.1 CDS NT05HA_2115 NC_012913.1 2081915 2082262 R identified by Glimmer3; putative; hypothetical protein complement(2081915..2082262) Aggregatibacter aphrophilus NJ8700 8121844 YP_003008515.1 CDS NT05HA_2116 NC_012913.1 2082430 2083536 R identified by Glimmer3; putative; hypothetical protein complement(2082430..2083536) Aggregatibacter aphrophilus NJ8700 8121845 YP_003008516.1 CDS NT05HA_2117 NC_012913.1 2083684 2086365 D identified by Glimmer3; putative; hypothetical protein 2083684..2086365 Aggregatibacter aphrophilus NJ8700 8121846 YP_003008517.1 CDS NT05HA_2118 NC_012913.1 2086600 2087469 R identified by Glimmer3; putative; hypothetical protein complement(2086600..2087469) Aggregatibacter aphrophilus NJ8700 8121847 YP_003008518.1 CDS NT05HA_2119 NC_012913.1 2087469 2090279 R identified by Glimmer3; putative; hypothetical protein complement(2087469..2090279) Aggregatibacter aphrophilus NJ8700 8121848 YP_003008519.1 CDS NT05HA_2120 NC_012913.1 2090284 2091621 R identified by Glimmer3; putative; hypothetical protein complement(2090284..2091621) Aggregatibacter aphrophilus NJ8700 8121849 YP_003008520.1 CDS NT05HA_2121 NC_012913.1 2091791 2093848 R identified by Glimmer3; putative; Rhs element Vgr protein complement(2091791..2093848) Aggregatibacter aphrophilus NJ8700 8121850 YP_003008521.1 CDS NT05HA_2122 NC_012913.1 2093920 2094186 R identified by Glimmer3; putative; paar repeat-containing protein complement(2093920..2094186) Aggregatibacter aphrophilus NJ8700 8121851 YP_003008522.1 CDS NT05HA_2123 NC_012913.1 2094541 2097129 R identified by Glimmer3; putative; type VI secretion ATPase, ClpV1 family complement(2094541..2097129) Aggregatibacter aphrophilus NJ8700 8121852 YP_003008523.1 CDS engB NC_012913.1 2097447 2098061 R binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC complement(2097447..2098061) Aggregatibacter aphrophilus NJ8700 8121853 YP_003008524.1 CDS NT05HA_2125 NC_012913.1 2098210 2099085 D identified by Glimmer3; putative; LapB 2098210..2099085 Aggregatibacter aphrophilus NJ8700 8121854 YP_003008525.1 CDS NT05HA_2126 NC_012913.1 2099161 2099637 R identified by Glimmer3; putative; TrmH family RNA methyltransferase complement(2099161..2099637) Aggregatibacter aphrophilus NJ8700 8121855 YP_003008526.1 CDS NT05HA_2127 NC_012913.1 2099751 2100248 R identified by Glimmer3; putative; hypothetical protein complement(2099751..2100248) Aggregatibacter aphrophilus NJ8700 8121856 YP_003008527.1 CDS NT05HA_2128 NC_012913.1 2100356 2101198 R identified by Glimmer3; putative; D-methionine-binding lipoprotein MetQ complement(2100356..2101198) Aggregatibacter aphrophilus NJ8700 8121857 YP_003008528.1 CDS NT05HA_2129 NC_012913.1 2101240 2101917 R identified by Glimmer3; putative; D-methionine transport system permease MetI complement(2101240..2101917) Aggregatibacter aphrophilus NJ8700 8121858 YP_003008529.1 CDS metN NC_012913.1 2101907 2102944 R part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit complement(2101907..2102944) Aggregatibacter aphrophilus NJ8700 8121859 YP_003008530.1 CDS NT05HA_2131 NC_012913.1 2103138 2103734 D Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase 2103138..2103734 Aggregatibacter aphrophilus NJ8700 8121860 YP_003008533.1 CDS def NC_012913.1 2109325 2109837 D cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase 2109325..2109837 Aggregatibacter aphrophilus NJ8700 8121866 YP_003008534.1 CDS fmt NC_012913.1 2109907 2110863 D modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase 2109907..2110863 Aggregatibacter aphrophilus NJ8700 8121867 YP_003008535.1 CDS trkA NC_012913.1 2112241 2113617 D involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component 2112241..2113617 Aggregatibacter aphrophilus NJ8700 8121869 YP_003008536.1 CDS NT05HA_2141 NC_012913.1 2113738 2114127 D identified by Glimmer3; putative; large conductance mechanosensitive channel protein 2113738..2114127 Aggregatibacter aphrophilus NJ8700 8121870 YP_003008537.1 CDS NT05HA_2142 NC_012913.1 2114228 2114647 D identified by Glimmer3; putative; hypothetical protein 2114228..2114647 Aggregatibacter aphrophilus NJ8700 8121871 YP_003008538.1 CDS NT05HA_2143 NC_012913.1 2114713 2115435 D identified by Glimmer3; putative; hypothetical protein 2114713..2115435 Aggregatibacter aphrophilus NJ8700 8121872 YP_003008539.1 CDS NT05HA_2144 NC_012913.1 2115530 2116168 D identified by Glimmer3; putative; fkbp-type peptidyl-prolyl cis-trans isomerase slyd 2115530..2116168 Aggregatibacter aphrophilus NJ8700 8121873 YP_003008540.1 CDS NT05HA_2145 NC_012913.1 2116227 2116445 R identified by Glimmer3; putative; hypothetical protein complement(2116227..2116445) Aggregatibacter aphrophilus NJ8700 8121874 YP_003008541.1 CDS NT05HA_2146 NC_012913.1 2116571 2117044 R identified by Glimmer3; putative; low molecular weight protein-tyrosine-phosphatase yfkj complement(2116571..2117044) Aggregatibacter aphrophilus NJ8700 8121235 YP_003008542.1 CDS NT05HA_2147 NC_012913.1 2117093 2118958 R identified by Glimmer3; putative; HmwC complement(2117093..2118958) Aggregatibacter aphrophilus NJ8700 8121236 YP_003008543.1 CDS rimO NC_012913.1 2118977 2120308 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase complement(2118977..2120308) Aggregatibacter aphrophilus NJ8700 8121237 YP_003008544.1 CDS NT05HA_2149 NC_012913.1 2120557 2120853 D identified by Glimmer3; putative; hypothetical protein 2120557..2120853 Aggregatibacter aphrophilus NJ8700 8121238 YP_003008545.1 CDS NT05HA_2150 NC_012913.1 2120856 2121152 D identified by Glimmer3; putative; hypothetical protein 2120856..2121152 Aggregatibacter aphrophilus NJ8700 8121239 YP_003008546.1 CDS NT05HA_2151 NC_012913.1 2121179 2121529 R identified by Glimmer3; putative; arsenate reductase complement(2121179..2121529) Aggregatibacter aphrophilus NJ8700 8121240 YP_003008547.1 CDS NT05HA_2152 NC_012913.1 2121603 2122661 D identified by Glimmer3; putative; PerM 2121603..2122661 Aggregatibacter aphrophilus NJ8700 8121241 YP_003008548.1 CDS NT05HA_2153 NC_012913.1 2122738 2123496 R catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase complement(2122738..2123496) Aggregatibacter aphrophilus NJ8700 8121242 YP_003008549.1 CDS NT05HA_2154 NC_012913.1 2123515 2123967 R transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC complement(2123515..2123967) Aggregatibacter aphrophilus NJ8700 8121243 YP_003008550.1 CDS NT05HA_2155 NC_012913.1 2124255 2125130 D catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA 2124255..2125130 Aggregatibacter aphrophilus NJ8700 8121244 YP_003008551.1 CDS NT05HA_2156 NC_012913.1 2125342 2126325 R identified by Glimmer3; putative; tRNA-dihydrouridine synthase A complement(2125342..2126325) Aggregatibacter aphrophilus NJ8700 8121245 YP_003008552.1 CDS NT05HA_2157 NC_012913.1 2126329 2127720 R identified by Glimmer3; putative; EriC protein complement(2126329..2127720) Aggregatibacter aphrophilus NJ8700 8121246 YP_003008553.1 CDS NT05HA_2158 NC_012913.1 2127950 2128954 D identified by Glimmer3; putative; ornithine carbamoyltransferase 2127950..2128954 Aggregatibacter aphrophilus NJ8700 8121247 YP_003008554.1 CDS NT05HA_2159 NC_012913.1 2128965 2129897 D reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase 2128965..2129897 Aggregatibacter aphrophilus NJ8700 8121248 YP_003008555.1 CDS NT05HA_2160 NC_012913.1 2130032 2131561 D identified by Glimmer3; putative; C4-dicarboxylate anaerobic carrier DcuC 2130032..2131561 Aggregatibacter aphrophilus NJ8700 8121249 YP_003008556.1 CDS NT05HA_2161 NC_012913.1 2131654 2132121 D identified by Glimmer3; putative; hypothetical protein 2131654..2132121 Aggregatibacter aphrophilus NJ8700 8121250 YP_003008557.1 CDS NT05HA_2162 NC_012913.1 2132116 2132274 R identified by Glimmer3; putative; AsnC family transcriptional regulator complement(2132116..2132274) Aggregatibacter aphrophilus NJ8700 8121251 YP_003008558.1 CDS rpsJ NC_012913.1 2132432 2132743 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 2132432..2132743 Aggregatibacter aphrophilus NJ8700 8121252 YP_003008559.1 CDS rplC NC_012913.1 2132760 2133386 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 2132760..2133386 Aggregatibacter aphrophilus NJ8700 8121253 YP_003008560.1 CDS rplD NC_012913.1 2133402 2134004 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 2133402..2134004 Aggregatibacter aphrophilus NJ8700 8121254 YP_003008561.1 CDS rplW NC_012913.1 2134001 2134303 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 2134001..2134303 Aggregatibacter aphrophilus NJ8700 8121255 YP_003008562.1 CDS rplB NC_012913.1 2134324 2135145 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 2134324..2135145 Aggregatibacter aphrophilus NJ8700 8121256 YP_003008563.1 CDS rpsS NC_012913.1 2135171 2135446 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 2135171..2135446 Aggregatibacter aphrophilus NJ8700 8121257 YP_003008564.1 CDS rplV NC_012913.1 2135457 2135789 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 2135457..2135789 Aggregatibacter aphrophilus NJ8700 8121258 YP_003008565.1 CDS rpsC NC_012913.1 2135806 2136513 D forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 2135806..2136513 Aggregatibacter aphrophilus NJ8700 8121259 YP_003008566.1 CDS NT05HA_2171 NC_012913.1 2136527 2136937 D identified by Glimmer3; putative; 50S ribosomal protein L16 2136527..2136937 Aggregatibacter aphrophilus NJ8700 8121260 YP_003008567.1 CDS NT05HA_2172 NC_012913.1 2136937 2137128 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 2136937..2137128 Aggregatibacter aphrophilus NJ8700 8121261 YP_003008568.1 CDS rpsQ NC_012913.1 2137128 2137385 D primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 2137128..2137385 Aggregatibacter aphrophilus NJ8700 8121262 YP_003008569.1 CDS NT05HA_2174 NC_012913.1 2137390 2137503 R identified by Glimmer3; putative; hypothetical protein complement(2137390..2137503) Aggregatibacter aphrophilus NJ8700 8121263 YP_003008570.1 CDS rplN NC_012913.1 2137668 2138039 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 2137668..2138039 Aggregatibacter aphrophilus NJ8700 8121264 YP_003008571.1 CDS rplX NC_012913.1 2138050 2138361 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 2138050..2138361 Aggregatibacter aphrophilus NJ8700 8121265 YP_003008572.1 CDS rplE NC_012913.1 2138379 2138918 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 2138379..2138918 Aggregatibacter aphrophilus NJ8700 8121266 YP_003008573.1 CDS rpsN NC_012913.1 2138931 2139236 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 2138931..2139236 Aggregatibacter aphrophilus NJ8700 8121267 YP_003008574.1 CDS rpsH NC_012913.1 2139273 2139665 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 2139273..2139665 Aggregatibacter aphrophilus NJ8700 8121268 YP_003008575.1 CDS rplF NC_012913.1 2139681 2140214 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 2139681..2140214 Aggregatibacter aphrophilus NJ8700 8121269 YP_003008576.1 CDS rplR NC_012913.1 2140228 2140581 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 2140228..2140581 Aggregatibacter aphrophilus NJ8700 8121270 YP_003008577.1 CDS rpsE NC_012913.1 2140597 2141097 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 2140597..2141097 Aggregatibacter aphrophilus NJ8700 8121271 YP_003008578.1 CDS rplO NC_012913.1 2141287 2141721 D late assembly protein; 50S ribosomal protein L15 2141287..2141721 Aggregatibacter aphrophilus NJ8700 8121272 YP_003008579.1 CDS secY NC_012913.1 2141725 2143050 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 2141725..2143050 Aggregatibacter aphrophilus NJ8700 8121273 YP_003008580.1 CDS NT05HA_2185 NC_012913.1 2143328 2143684 D identified by Glimmer3; putative; ribosomal protein S13p/S18e 2143328..2143684 Aggregatibacter aphrophilus NJ8700 8121274 YP_003008581.1 CDS NT05HA_2186 NC_012913.1 2143700 2144089 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 2143700..2144089 Aggregatibacter aphrophilus NJ8700 8121275 YP_003008582.1 CDS rpsD NC_012913.1 2144119 2144739 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 2144119..2144739 Aggregatibacter aphrophilus NJ8700 8121276 YP_003008583.1 CDS NT05HA_2188 NC_012913.1 2144768 2145757 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 2144768..2145757 Aggregatibacter aphrophilus NJ8700 8121277 YP_003008584.1 CDS rplQ NC_012913.1 2145799 2146188 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 2145799..2146188 Aggregatibacter aphrophilus NJ8700 8121278 YP_003008585.1 CDS NT05HA_2190 NC_012913.1 2146278 2147039 R identified by Glimmer3; putative; lipopolysaccharide core biosynthesis glycosyltransferase KdtX complement(2146278..2147039) Aggregatibacter aphrophilus NJ8700 8121279 YP_003008586.1 CDS NT05HA_2191 NC_012913.1 2147138 2148412 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 2147138..2148412 Aggregatibacter aphrophilus NJ8700 8121280 YP_003008587.1 CDS coaD NC_012913.1 2148422 2148898 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 2148422..2148898 Aggregatibacter aphrophilus NJ8700 8121281 YP_003008588.1 CDS NT05HA_2193 NC_012913.1 2148983 2149519 D regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase 2148983..2149519 Aggregatibacter aphrophilus NJ8700 8121282 YP_003008589.1 CDS NT05HA_2194 NC_012913.1 2149591 2150517 D identified by Glimmer3; putative; SurA 2149591..2150517 Aggregatibacter aphrophilus NJ8700 8121283 YP_003008590.1 CDS ksgA NC_012913.1 2150593 2151456 D catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase 2150593..2151456 Aggregatibacter aphrophilus NJ8700 8121284 YP_003008591.1 CDS apaH NC_012913.1 2151471 2152298 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 2151471..2152298 Aggregatibacter aphrophilus NJ8700 8121285 YP_003008592.1 CDS NT05HA_2197 NC_012913.1 2152377 2152841 D identified by Glimmer3; putative; GNAT family acetyltransferase 2152377..2152841 Aggregatibacter aphrophilus NJ8700 8121286 YP_003008593.1 CDS NT05HA_2198 NC_012913.1 2152838 2153476 D identified by Glimmer3; putative; diadenosine tetraphosphatase 2152838..2153476 Aggregatibacter aphrophilus NJ8700 8121287 YP_003008594.1 CDS leuS NC_012913.1 2153598 2156186 D leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase 2153598..2156186 Aggregatibacter aphrophilus NJ8700 8121288 YP_003008595.1 CDS NT05HA_2200 NC_012913.1 2156249 2156752 D identified by Glimmer3; putative; RlpB protein 2156249..2156752 Aggregatibacter aphrophilus NJ8700 8121289 YP_003008596.1 CDS holA NC_012913.1 2156752 2157786 D required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta 2156752..2157786 Aggregatibacter aphrophilus NJ8700 8121290 YP_003008597.1 CDS NT05HA_2202 NC_012913.1 2157888 2158157 D identified by Glimmer3; putative; hypothetical protein 2157888..2158157 Aggregatibacter aphrophilus NJ8700 8121291 YP_003008598.1 CDS NT05HA_2203 NC_012913.1 2158206 2158610 R identified by Glimmer3; putative; mutator MutT protein/thiamine-phosphate pyrophosphorylase family protein complement(2158206..2158610) Aggregatibacter aphrophilus NJ8700 8121292 YP_003008599.1 CDS NT05HA_2204 NC_012913.1 2158694 2161393 R functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA complement(2158694..2161393) Aggregatibacter aphrophilus NJ8700 8121293 YP_003008600.1 CDS NT05HA_2205 NC_012913.1 2161471 2161734 R identified by Glimmer3; putative; hypothetical protein complement(2161471..2161734) Aggregatibacter aphrophilus NJ8700 8121294 YP_003008601.1 CDS NT05HA_2206 NC_012913.1 2161880 2162191 D identified by Glimmer3; putative; hypothetical protein 2161880..2162191 Aggregatibacter aphrophilus NJ8700 8121295 YP_003008602.1 CDS NT05HA_2207 NC_012913.1 2162229 2162645 D identified by Glimmer3; putative; SoxR protein 2162229..2162645 Aggregatibacter aphrophilus NJ8700 8121296 YP_003008603.1 CDS uvrA NC_012913.1 2162717 2165548 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(2162717..2165548) Aggregatibacter aphrophilus NJ8700 8121297 YP_003008604.1 CDS NT05HA_2209 NC_012913.1 2165718 2166194 D identified by Glimmer3; putative; single-stranded DNA-binding protein 2165718..2166194 Aggregatibacter aphrophilus NJ8700 8121298 YP_003008605.1 CDS NT05HA_2210 NC_012913.1 2166211 2166354 D identified by Glimmer3; putative; hypothetical protein 2166211..2166354 Aggregatibacter aphrophilus NJ8700 8121299 YP_003008606.1 CDS NT05HA_2211 NC_012913.1 2166742 2167158 R identified by Glimmer3; putative; galactoside O-acetyltransferase complement(2166742..2167158) Aggregatibacter aphrophilus NJ8700 8121300 YP_003008607.1 CDS NT05HA_2212 NC_012913.1 2167137 2167310 R identified by Glimmer3; putative; hypothetical protein complement(2167137..2167310) Aggregatibacter aphrophilus NJ8700 8121301 YP_003008608.1 CDS NT05HA_2213 NC_012913.1 2167310 2167654 R identified by Glimmer3; putative; hypothetical protein complement(2167310..2167654) Aggregatibacter aphrophilus NJ8700 8121302 YP_003008609.1 CDS NT05HA_2214 NC_012913.1 2167786 2168934 R identified by Glimmer3; putative; alpha/beta hydrolase superfamily protein complement(2167786..2168934) Aggregatibacter aphrophilus NJ8700 8121303 YP_003008610.1 CDS NT05HA_2215 NC_012913.1 2169056 2169961 D identified by Glimmer3; putative; LysR family transcriptional regulator 2169056..2169961 Aggregatibacter aphrophilus NJ8700 8121304 YP_003008611.1 CDS NT05HA_2216 NC_012913.1 2170630 2171361 R identified by Glimmer3; putative; TatD family hydrolase complement(2170630..2171361) Aggregatibacter aphrophilus NJ8700 8121305 YP_003008612.1 CDS NT05HA_2217 NC_012913.1 2171358 2172674 R identified by Glimmer3; putative; hypothetical protein complement(2171358..2172674) Aggregatibacter aphrophilus NJ8700 8121306 YP_003008613.1 CDS NT05HA_2218 NC_012913.1 2172674 2173414 R identified by Glimmer3; putative; hypothetical protein complement(2172674..2173414) Aggregatibacter aphrophilus NJ8700 8121307 YP_003008614.1 CDS NT05HA_2219 NC_012913.1 2173418 2175184 R identified by Glimmer3; putative; KAP P-loop domain-containing protein complement(2173418..2175184) Aggregatibacter aphrophilus NJ8700 8121308 YP_003008615.1 CDS NT05HA_2220 NC_012913.1 2175279 2175467 R identified by Glimmer3; putative; hypothetical protein complement(2175279..2175467) Aggregatibacter aphrophilus NJ8700 8121309 YP_003008616.1 CDS NT05HA_2221 NC_012913.1 2175588 2175710 D identified by Glimmer3; putative; hypothetical protein 2175588..2175710 Aggregatibacter aphrophilus NJ8700 8121310 YP_003008617.1 CDS NT05HA_2222 NC_012913.1 2175688 2175840 D identified by Glimmer3; putative; MarR family transcriptional regulator 2175688..2175840 Aggregatibacter aphrophilus NJ8700 8121311 YP_003008618.1 CDS NT05HA_2223 NC_012913.1 2175867 2175983 D identified by Glimmer3; putative; hypothetical protein 2175867..2175983 Aggregatibacter aphrophilus NJ8700 8121312 YP_003008619.1 CDS NT05HA_2224 NC_012913.1 2175986 2176144 R identified by Glimmer3; putative; hypothetical protein complement(2175986..2176144) Aggregatibacter aphrophilus NJ8700 8121313 YP_003008620.1 CDS NT05HA_2225 NC_012913.1 2176410 2177249 D identified by Glimmer3; putative; 4,5-dopa dioxygenase extradiol 2176410..2177249 Aggregatibacter aphrophilus NJ8700 8121314 YP_003008621.1 CDS NT05HA_2226 NC_012913.1 2177528 2177896 R identified by Glimmer3; putative; periplasmic protein complement(2177528..2177896) Aggregatibacter aphrophilus NJ8700 8123331 YP_003008622.1 CDS NT05HA_2227 NC_012913.1 2178123 2178245 R identified by Glimmer3; putative; hypothetical protein complement(2178123..2178245) Aggregatibacter aphrophilus NJ8700 8123332 YP_003008623.1 CDS NT05HA_2228 NC_012913.1 2178220 2179074 R identified by Glimmer3; putative; (Deoxyadenosyl-methyltransferase)(DNA adenine methyltransferase) (M.EcoDam); DNA adenine methylase complement(2178220..2179074) Aggregatibacter aphrophilus NJ8700 8123333 YP_003008624.1 CDS aroB NC_012913.1 2179080 2180168 R catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase complement(2179080..2180168) Aggregatibacter aphrophilus NJ8700 8123334 YP_003008625.1 CDS aroK NC_012913.1 2180189 2180716 R catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase complement(2180189..2180716) Aggregatibacter aphrophilus NJ8700 8123335 YP_003008626.1 CDS NT05HA_2231 NC_012913.1 2180930 2182354 R identified by Glimmer3; putative; protein transport protein HofQ complement(2180930..2182354) Aggregatibacter aphrophilus NJ8700 8123336 YP_003008627.1 CDS NT05HA_2232 NC_012913.1 2182364 2182759 R identified by Glimmer3; putative; ComD complement(2182364..2182759) Aggregatibacter aphrophilus NJ8700 8123337 YP_003008628.1 CDS NT05HA_2233 NC_012913.1 2182759 2183292 R identified by Glimmer3; putative; competence protein C complement(2182759..2183292) Aggregatibacter aphrophilus NJ8700 8123338 YP_003008629.1 CDS NT05HA_2234 NC_012913.1 2183289 2183807 R identified by Glimmer3; putative; ComB complement(2183289..2183807) Aggregatibacter aphrophilus NJ8700 8123339 YP_003008630.1 CDS NT05HA_2235 NC_012913.1 2183821 2184423 R identified by Glimmer3; putative; competence protein A complement(2183821..2184423) Aggregatibacter aphrophilus NJ8700 8123340 YP_003008631.1 CDS NT05HA_2238 NC_012913.1 2187418 2188263 D identified by Glimmer3; putative; hypothetical protein 2187418..2188263 Aggregatibacter aphrophilus NJ8700 8123342 YP_003008632.1 CDS NT05HA_2239 NC_012913.1 2188233 2188361 D identified by Glimmer3; putative; hypothetical protein 2188233..2188361 Aggregatibacter aphrophilus NJ8700 8123343 YP_003008633.1 CDS NT05HA_2240 NC_012913.1 2188371 2189741 D catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase 2188371..2189741 Aggregatibacter aphrophilus NJ8700 8123344 YP_003008634.1 CDS NT05HA_2241 NC_012913.1 2189862 2190506 R complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein complement(2189862..2190506) Aggregatibacter aphrophilus NJ8700 8123345 YP_003008635.1 CDS NT05HA_2242 NC_012913.1 2190544 2190762 R identified by Glimmer3; putative; hypothetical protein complement(2190544..2190762) Aggregatibacter aphrophilus NJ8700 8123346 YP_003008636.1 CDS slmA NC_012913.1 2190786 2191385 R FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein complement(2190786..2191385) Aggregatibacter aphrophilus NJ8700 8123347 YP_003008637.1 CDS NT05HA_2244 NC_012913.1 2191385 2191840 R identified by Glimmer3; putative; deoxyuridine 5'-triphosphate nucleotidohydrolase complement(2191385..2191840) Aggregatibacter aphrophilus NJ8700 8123348 YP_003008638.1 CDS NT05HA_2245 NC_012913.1 2191889 2193088 R catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase complement(2191889..2193088) Aggregatibacter aphrophilus NJ8700 8123349 YP_003008639.1 CDS radC NC_012913.1 2193266 2193925 D Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC 2193266..2193925 Aggregatibacter aphrophilus NJ8700 8123350 YP_003008640.1 CDS rpmB NC_012913.1 2194136 2194372 D required for 70S ribosome assembly; 50S ribosomal protein L28 2194136..2194372 Aggregatibacter aphrophilus NJ8700 8123351 YP_003008641.1 CDS rpmG NC_012913.1 2194384 2194554 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 2194384..2194554 Aggregatibacter aphrophilus NJ8700 8123352 YP_003008642.1 CDS NT05HA_2249 NC_012913.1 2194624 2195439 D Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase 2194624..2195439 Aggregatibacter aphrophilus NJ8700 8123353 YP_003008643.1 CDS NT05HA_2250 NC_012913.1 2195436 2196497 R identified by Glimmer3; putative; formamidopyrimidine-DNA glycosylase complement(2195436..2196497) Aggregatibacter aphrophilus NJ8700 8123354 YP_003008644.1 CDS NT05HA_2251 NC_012913.1 2196502 2197515 R identified by Glimmer3; putative; RfaF protein complement(2196502..2197515) Aggregatibacter aphrophilus NJ8700 8123355 YP_003008645.1 CDS NT05HA_2252 NC_012913.1 2197527 2198213 R identified by Glimmer3; putative; lipooligosaccharide galactosyltransferase I complement(2197527..2198213) Aggregatibacter aphrophilus NJ8700 8123356 YP_003008646.1 CDS rpmE NC_012913.1 2198274 2198486 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(2198274..2198486) Aggregatibacter aphrophilus NJ8700 8123357 YP_003008647.1 CDS NT05HA_2254 NC_012913.1 2198744 2199592 D identified by Glimmer3; putative; lipooligosaccharide biosynthesis protein lex-1 2198744..2199592 Aggregatibacter aphrophilus NJ8700 8123358 YP_003008648.1 CDS NT05HA_2255 NC_012913.1 2199702 2200547 D identified by Glimmer3; putative; capsular polysaccharide synthesis protein 2199702..2200547 Aggregatibacter aphrophilus NJ8700 8123359 YP_003008649.1 CDS NT05HA_2256 NC_012913.1 2200673 2201392 R identified by Glimmer3; putative; LicC protein complement(2200673..2201392) Aggregatibacter aphrophilus NJ8700 8123360 YP_003008650.1 CDS NT05HA_2257 NC_012913.1 2201368 2202264 R identified by Glimmer3; putative; choline transport protein complement(2201368..2202264) Aggregatibacter aphrophilus NJ8700 8123361 YP_003008651.1 CDS NT05HA_2258 NC_012913.1 2202254 2203171 R identified by Glimmer3; putative; choline kinase complement(2202254..2203171) Aggregatibacter aphrophilus NJ8700 8123362 YP_003008652.1 CDS NT05HA_2259 NC_012913.1 2203188 2203346 R identified by Glimmer3; putative; hypothetical protein complement(2203188..2203346) Aggregatibacter aphrophilus NJ8700 8123363 YP_003008653.1 CDS NT05HA_2260 NC_012913.1 2204207 2206405 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 2204207..2206405 Aggregatibacter aphrophilus NJ8700 8123364 YP_003008654.1 CDS NT05HA_2261 NC_012913.1 2206509 2207351 D identified by Glimmer3; putative; cell division protein FtsN 2206509..2207351 Aggregatibacter aphrophilus NJ8700 8123365 YP_003008655.1 CDS NT05HA_2262 NC_012913.1 2207555 2208121 D identified by Glimmer3; putative; AcrR protein 2207555..2208121 Aggregatibacter aphrophilus NJ8700 8123366 YP_003008656.1 CDS NT05HA_2263 NC_012913.1 2208159 2209355 D identified by Glimmer3; putative; AcrA protein 2208159..2209355 Aggregatibacter aphrophilus NJ8700 8123367 YP_003008657.1 CDS NT05HA_2264 NC_012913.1 2209369 2212467 D identified by Glimmer3; putative; acriflavine resistance protein 2209369..2212467 Aggregatibacter aphrophilus NJ8700 8123368 YP_003008658.1 CDS NT05HA_2265 NC_012913.1 2212615 2213415 D identified by Glimmer3; putative; methyltransferase domain-containing protein 2212615..2213415 Aggregatibacter aphrophilus NJ8700 8123369 YP_003008659.1 CDS NT05HA_2266 NC_012913.1 2213716 2213835 R identified by Glimmer3; putative; hypothetical protein complement(2213716..2213835) Aggregatibacter aphrophilus NJ8700 8123370 YP_003008660.1 CDS NT05HA_2267 NC_012913.1 2213837 2214784 D responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA 2213837..2214784 Aggregatibacter aphrophilus NJ8700 8123371 YP_003008661.1 CDS NT05HA_2268 NC_012913.1 2214799 2215359 D identified by Glimmer3; putative; integral membrane protein 2214799..2215359 Aggregatibacter aphrophilus NJ8700 8123372 YP_003008662.1 CDS NT05HA_2269 NC_012913.1 2215369 2215662 D identified by Glimmer3; putative; hypothetical protein 2215369..2215662 Aggregatibacter aphrophilus NJ8700 8123373 YP_003008663.1 CDS NT05HA_2270 NC_012913.1 2215619 2215807 R identified by Glimmer3; putative; hypothetical protein complement(2215619..2215807) Aggregatibacter aphrophilus NJ8700 8123374 YP_003008664.1 CDS NT05HA_2271 NC_012913.1 2215839 2216498 D identified by Glimmer3; putative; NADPH-flavin oxidoreductase 2215839..2216498 Aggregatibacter aphrophilus NJ8700 8123375 YP_003008665.1 CDS NT05HA_2272 NC_012913.1 2216568 2218541 D identified by Glimmer3; putative; excinuclease ABC subunit B 2216568..2218541 Aggregatibacter aphrophilus NJ8700 8123376 YP_003008666.1 CDS NT05HA_2273 NC_012913.1 2218778 2219353 R identified by Glimmer3; putative; NADPH-q uinone reductase complement(2218778..2219353) Aggregatibacter aphrophilus NJ8700 8123377 YP_003008667.1 CDS NT05HA_2274 NC_012913.1 2219541 2220275 R identified by Glimmer3; putative; hypothetical protein complement(2219541..2220275) Aggregatibacter aphrophilus NJ8700 8123378 YP_003008668.1 CDS rluD NC_012913.1 2220277 2221251 R responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D complement(2220277..2221251) Aggregatibacter aphrophilus NJ8700 8123379 YP_003008669.1 CDS NT05HA_2276 NC_012913.1 2221358 2222152 D identified by Glimmer3; putative; lipoprotein 2221358..2222152 Aggregatibacter aphrophilus NJ8700 8123380 YP_003008670.1 CDS NT05HA_2277 NC_012913.1 2222193 2222771 R identified by Glimmer3; putative; 5-formyltetrahydrofolate cyclo-ligase complement(2222193..2222771) Aggregatibacter aphrophilus NJ8700 8123381 YP_003008671.1 CDS NT05HA_2278 NC_012913.1 2223062 2223370 R identified by Glimmer3; putative; hypothetical protein complement(2223062..2223370) Aggregatibacter aphrophilus NJ8700 8123382 YP_003008672.1 CDS NT05HA_2279 NC_012913.1 2223501 2224049 D the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein 2223501..2224049 Aggregatibacter aphrophilus NJ8700 8123383 YP_003008673.1 CDS NT05HA_2280 NC_012913.1 2224062 2225363 D identified by Glimmer3; putative; (X-Pro aminopeptidase)(Aminopeptidase P II) (APP-II) (Aminoacylproline aminopeptidase); Xaa-Pro aminopeptidase 2224062..2225363 Aggregatibacter aphrophilus NJ8700 8123384 YP_003008674.1 CDS NT05HA_2283 NC_012913.1 2226583 2227827 D identified by Glimmer3; putative; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 2226583..2227827 Aggregatibacter aphrophilus NJ8700 8123386 YP_003008675.1 CDS rpsP NC_012913.1 2228047 2228295 D binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 2228047..2228295 Aggregatibacter aphrophilus NJ8700 8123387 YP_003008676.1 CDS rimM NC_012913.1 2228320 2228847 D Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM 2228320..2228847 Aggregatibacter aphrophilus NJ8700 8123388 YP_003008677.1 CDS trmD NC_012913.1 2228912 2229664 D methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase 2228912..2229664 Aggregatibacter aphrophilus NJ8700 8123389 YP_003008678.1 CDS rplS NC_012913.1 2229789 2230139 D this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 2229789..2230139 Aggregatibacter aphrophilus NJ8700 8123390 YP_003008679.1 CDS NT05HA_2288 NC_012913.1 2230298 2230711 R identified by Glimmer3; putative; rod shape-determining protein MreD complement(2230298..2230711) Aggregatibacter aphrophilus NJ8700 8123391 YP_003008680.1 CDS NT05HA_2289 NC_012913.1 2230788 2231849 R in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC complement(2230788..2231849) Aggregatibacter aphrophilus NJ8700 8123392 YP_003008681.1 CDS NT05HA_2290 NC_012913.1 2231914 2232969 R functions in MreBCD complex in some organisms; rod shape-determining protein MreB complement(2231914..2232969) Aggregatibacter aphrophilus NJ8700 8123393 YP_003008682.1 CDS NT05HA_2291 NC_012913.1 2233005 2233148 R identified by Glimmer3; putative; hypothetical protein complement(2233005..2233148) Aggregatibacter aphrophilus NJ8700 8123394 YP_003008683.1 CDS NT05HA_2292 NC_012913.1 2233228 2235633 D identified by Glimmer3; putative; ribonuclease R 2233228..2235633 Aggregatibacter aphrophilus NJ8700 8123395 YP_003008684.1 CDS NT05HA_2293 NC_012913.1 2235630 2236367 D Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase 2235630..2236367 Aggregatibacter aphrophilus NJ8700 8123396 YP_003008685.1 CDS NT05HA_2294 NC_012913.1 2236513 2236683 D identified by Glimmer3; putative; hypothetical protein 2236513..2236683 Aggregatibacter aphrophilus NJ8700 8123397 YP_003008686.1 CDS NT05HA_2295 NC_012913.1 2236703 2238145 D identified by Glimmer3; putative; glycerol-3-phosphate transporter 2236703..2238145 Aggregatibacter aphrophilus NJ8700 8123398 YP_003008687.1 CDS glpQ NC_012913.1 2238377 2239459 D hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase 2238377..2239459 Aggregatibacter aphrophilus NJ8700 8123399 YP_003008688.1 CDS NT05HA_2297 NC_012913.1 2239605 2241083 R catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase complement(2239605..2241083) Aggregatibacter aphrophilus NJ8700 8123400 YP_003008689.1 CDS NT05HA_2298 NC_012913.1 2241668 2242546 D participates in controlling several genes involved in isoleucine and valine biosynthesis; activates the transcription of the ilvC gene in the presence of acetolactate or acetohydroxybutyrate; DNA-binding transcriptional regulator IlvY 2241668..2242546 Aggregatibacter aphrophilus NJ8700 8123401 YP_003008690.1 CDS NT05HA_2299 NC_012913.1 2242579 2243460 D identified by Glimmer3; putative; shikimate 5-dehydrogenase 2242579..2243460 Aggregatibacter aphrophilus NJ8700 8123402 YP_003008691.1 CDS aroE NC_012913.1 2243455 2244255 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(2243455..2244255) Aggregatibacter aphrophilus NJ8700 8123403 YP_003008692.1 CDS NT05HA_2301 NC_012913.1 2244259 2244810 R identified by Glimmer3; putative; protein YrdC complement(2244259..2244810) Aggregatibacter aphrophilus NJ8700 8123404 YP_003008693.1 CDS NT05HA_2302 NC_012913.1 2244815 2245399 R identified by Glimmer3; putative; DNA topoisomerase I complement(2244815..2245399) Aggregatibacter aphrophilus NJ8700 8123405 YP_003008694.1 CDS NT05HA_2303 NC_012913.1 2245528 2247144 D identified by Glimmer3; putative; DNA recombination protein RmuC 2245528..2247144 Aggregatibacter aphrophilus NJ8700 8123406 YP_003008695.1 CDS NT05HA_2304 NC_012913.1 2247387 2247713 D identified by Glimmer3; putative; aspartate-semialdehyde dehydrogenase 2247387..2247713 Aggregatibacter aphrophilus NJ8700 8123407 YP_003008696.1 CDS NT05HA_2305 NC_012913.1 2247710 2248024 R identified by Glimmer3; putative; thiosulfate sulfurtransferase GlpE complement(2247710..2248024) Aggregatibacter aphrophilus NJ8700 8123408 YP_003008697.1 CDS NT05HA_2306 NC_012913.1 2248066 2248935 D identified by Glimmer3; putative; GlpG protein 2248066..2248935 Aggregatibacter aphrophilus NJ8700 8123409 YP_003008698.1 CDS NT05HA_2307 NC_012913.1 2249000 2249755 D identified by Glimmer3; putative; putative HTH-type transcriptional regulator YihW 2249000..2249755 Aggregatibacter aphrophilus NJ8700 8123410 YP_003008699.1 CDS NT05HA_2308 NC_012913.1 2250065 2252839 D identified by Glimmer3; putative; heme utilization protein 2250065..2252839 Aggregatibacter aphrophilus NJ8700 8122515 YP_003008700.1 CDS NT05HA_2309 NC_012913.1 2252868 2253260 D identified by Glimmer3; putative; bacteriophage P4 DNA primase 2252868..2253260 Aggregatibacter aphrophilus NJ8700 8122516 YP_003008701.1 CDS NT05HA_2310 NC_012913.1 2253253 2253972 D identified by Glimmer3; putative; phage DNA primase 2253253..2253972 Aggregatibacter aphrophilus NJ8700 8122517 YP_003008702.1 CDS NT05HA_2311 NC_012913.1 2254137 2254388 R identified by Glimmer3; putative; site-specific recombinase, phage integrase family complement(2254137..2254388) Aggregatibacter aphrophilus NJ8700 8122518 YP_003008703.1 CDS NT05HA_2312 NC_012913.1 2254385 2254906 R identified by Glimmer3; putative; prophage integrase complement(2254385..2254906) Aggregatibacter aphrophilus NJ8700 8122519 YP_003008704.1 CDS NT05HA_2313 NC_012913.1 2255218 2256159 R identified by Glimmer3; putative; gp8 complement(2255218..2256159) Aggregatibacter aphrophilus NJ8700 8122520 YP_003008705.1 CDS NT05HA_2314 NC_012913.1 2256163 2256612 R identified by Glimmer3; putative; hypothetical protein complement(2256163..2256612) Aggregatibacter aphrophilus NJ8700 8122521 YP_003008706.1 CDS NT05HA_2315 NC_012913.1 2256622 2257191 R identified by Glimmer3; putative; gp6 complement(2256622..2257191) Aggregatibacter aphrophilus NJ8700 8122522 YP_003008707.1 CDS NT05HA_2316 NC_012913.1 2257494 2259317 R identified by Glimmer3; putative; D5 N like family complement(2257494..2259317) Aggregatibacter aphrophilus NJ8700 8122523 YP_003008708.1 CDS NT05HA_2317 NC_012913.1 2259307 2259627 R identified by Glimmer3; putative; hypothetical protein complement(2259307..2259627) Aggregatibacter aphrophilus NJ8700 8122524 YP_003008709.1 CDS NT05HA_2318 NC_012913.1 2259620 2260168 R identified by Glimmer3; putative; hypothetical protein complement(2259620..2260168) Aggregatibacter aphrophilus NJ8700 8122525 YP_003008710.1 CDS NT05HA_2319 NC_012913.1 2260249 2260440 R identified by Glimmer3; putative; excisionase family DNA binding domain-containing protein complement(2260249..2260440) Aggregatibacter aphrophilus NJ8700 8122526 YP_003008711.1 CDS NT05HA_2320 NC_012913.1 2260843 2261211 R identified by Glimmer3; putative; positive regulator of late transcription complement(2260843..2261211) Aggregatibacter aphrophilus NJ8700 8122527 YP_003008712.1 CDS NT05HA_2321 NC_012913.1 2261262 2261387 D identified by Glimmer3; putative; hypothetical protein 2261262..2261387 Aggregatibacter aphrophilus NJ8700 8122528 YP_003008713.1 CDS NT05HA_2322 NC_012913.1 2261686 2262927 R identified by Glimmer3; putative; prophage integrase complement(2261686..2262927) Aggregatibacter aphrophilus NJ8700 8122529 YP_003008714.1 CDS NT05HA_2324 NC_012913.1 2263326 2265197 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(2263326..2265197) Aggregatibacter aphrophilus NJ8700 8122531 YP_003008715.1 CDS dnaG NC_012913.1 2265250 2267046 R synthesizes RNA primers at the replication forks; DNA primase complement(2265250..2267046) Aggregatibacter aphrophilus NJ8700 8122532 YP_003008716.1 CDS rpsU NC_012913.1 2267169 2267384 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(2267169..2267384) Aggregatibacter aphrophilus NJ8700 8122533 YP_003008717.1 CDS NT05HA_2327 NC_012913.1 2267419 2267586 D identified by Glimmer3; putative; hypothetical protein 2267419..2267586 Aggregatibacter aphrophilus NJ8700 8122534 YP_003008718.1 CDS NT05HA_2328 NC_012913.1 2267609 2268637 D identified by Glimmer3; putative; O-sialoglycoprotein endopeptidase 2267609..2268637 Aggregatibacter aphrophilus NJ8700 8122535 YP_003008719.1 CDS NT05HA_2329 NC_012913.1 2268709 2268942 D identified by Glimmer3; putative; hypothetical protein 2268709..2268942 Aggregatibacter aphrophilus NJ8700 8122536 YP_003008720.1 CDS NT05HA_2330 NC_012913.1 2268942 2269520 D identified by Glimmer3; putative; thymidine kinase 2268942..2269520 Aggregatibacter aphrophilus NJ8700 8122537 YP_003008721.1 CDS ligA NC_012913.1 2269705 2271720 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(2269705..2271720) Aggregatibacter aphrophilus NJ8700 8122538 YP_003008722.1 CDS NT05HA_2332 NC_012913.1 2271825 2272841 R interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA complement(2271825..2272841) Aggregatibacter aphrophilus NJ8700 8122539 YP_003008723.1 CDS NT05HA_2333 NC_012913.1 2272986 2273816 D putative role in sulfur assimilation; putative sulfate transport protein CysZ 2272986..2273816 Aggregatibacter aphrophilus NJ8700 8122540 YP_003008724.1 CDS NT05HA_2334 NC_012913.1 2273929 2274876 D identified by Glimmer3; putative; cysteine synthase A 2273929..2274876 Aggregatibacter aphrophilus NJ8700 8122541 YP_003008725.1 CDS NT05HA_2336 NC_012913.1 2274947 2275528 R identified by Glimmer3; putative; hypothetical protein complement(2274947..2275528) Aggregatibacter aphrophilus NJ8700 8122542 YP_003008726.1 CDS NT05HA_2335 NC_012913.1 2275527 2275697 D identified by Glimmer3; putative; uracil DNA glycosylase family protein 2275527..2275697 Aggregatibacter aphrophilus NJ8700 8122543 YP_003008727.1 CDS NT05HA_2337 NC_012913.1 2275725 2276816 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(2275725..2276816) Aggregatibacter aphrophilus NJ8700 8122544 YP_003008728.1 CDS NT05HA_2338 NC_012913.1 2276885 2277469 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(2276885..2277469) Aggregatibacter aphrophilus NJ8700 8122545 YP_003008729.1 CDS NT05HA_2339 NC_012913.1 2277590 2277967 R identified by Glimmer3; putative; hypothetical protein complement(2277590..2277967) Aggregatibacter aphrophilus NJ8700 8122546 YP_003008730.1 CDS NT05HA_2340 NC_012913.1 2277945 2278082 R identified by Glimmer3; putative; similar to Plu3881; hypothetical protein complement(2277945..2278082) Aggregatibacter aphrophilus NJ8700 8122547 YP_003008731.1 CDS serB NC_012913.1 2278093 2279037 R catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase complement(2278093..2279037) Aggregatibacter aphrophilus NJ8700 8122548 YP_003008732.1 CDS NT05HA_2342 NC_012913.1 2279114 2279791 D identified by Glimmer3; putative; protein AhpA 2279114..2279791 Aggregatibacter aphrophilus NJ8700 8122549 YP_003008733.1 CDS rpsT NC_012913.1 2280781 2281044 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(2280781..2281044) Aggregatibacter aphrophilus NJ8700 8122550 YP_003008734.1 CDS NT05HA_2344 NC_012913.1 2281313 2282884 D identified by Glimmer3; putative; integral membrane protein MviN 2281313..2282884 Aggregatibacter aphrophilus NJ8700 8122551 YP_003008735.1 CDS NT05HA_2345 NC_012913.1 2282968 2283987 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 2282968..2283987 Aggregatibacter aphrophilus NJ8700 8122552 YP_003008736.1 CDS ileS NC_012913.1 2284027 2286849 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 2284027..2286849 Aggregatibacter aphrophilus NJ8700 8122553 YP_003008737.1 CDS lspA NC_012913.1 2286937 2287431 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 2286937..2287431 Aggregatibacter aphrophilus NJ8700 8122554 YP_003008738.1 CDS ispH NC_012913.1 2287431 2288375 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2287431..2288375 Aggregatibacter aphrophilus NJ8700 8122555 YP_003008739.1 CDS NT05HA_2349 NC_012913.1 2288484 2288621 D identified by Glimmer3; putative; hypothetical protein 2288484..2288621 Aggregatibacter aphrophilus NJ8700 8122556 YP_003008740.1 CDS NT05HA_2350 NC_012913.1 2288661 2288987 D identified by Glimmer3; putative; ComE operon protein 1 2288661..2288987 Aggregatibacter aphrophilus NJ8700 8122557 YP_003008741.1 CDS NT05HA_2351 NC_012913.1 2289025 2289696 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 2289025..2289696 Aggregatibacter aphrophilus NJ8700 8122558 YP_003008742.1 CDS NT05HA_2352 NC_012913.1 2289752 2290075 D identified by Glimmer3; putative; protein YbjQ 2289752..2290075 Aggregatibacter aphrophilus NJ8700 8122559 YP_003008743.1 CDS NT05HA_2353 NC_012913.1 2290089 2291243 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 2290089..2291243 Aggregatibacter aphrophilus NJ8700 8122560 YP_003008744.1 CDS NT05HA_2354 NC_012913.1 2291356 2292012 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 2291356..2292012 Aggregatibacter aphrophilus NJ8700 8122561 YP_003008745.1 CDS NT05HA_2355 NC_012913.1 2292036 2293268 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 2292036..2293268 Aggregatibacter aphrophilus NJ8700 8122562 YP_003008746.1 CDS NT05HA_2356 NC_012913.1 2293324 2294151 R identified by Glimmer3; putative; zinc protease complement(2293324..2294151) Aggregatibacter aphrophilus NJ8700 8122563 YP_003008747.1 CDS NT05HA_2357 NC_012913.1 2294291 2294734 D identified by Glimmer3; putative; LysM domain/BON superfamily protein 2294291..2294734 Aggregatibacter aphrophilus NJ8700 8122564 YP_003008748.1 CDS NT05HA_2358 NC_012913.1 2294816 2295412 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY complement(2294816..2295412) Aggregatibacter aphrophilus NJ8700 8122565 YP_003008749.1 CDS NT05HA_2359 NC_012913.1 2295512 2295871 D identified by Glimmer3; putative; dihydroneopterin aldolase 2295512..2295871 Aggregatibacter aphrophilus NJ8700 8122566 YP_003008750.1 CDS NT05HA_2360 NC_012913.1 2295886 2297349 D YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 2295886..2297349 Aggregatibacter aphrophilus NJ8700 8122567 YP_003008751.1 CDS NT05HA_2361 NC_012913.1 2297318 2297464 D identified by Glimmer3; putative; hypothetical protein 2297318..2297464 Aggregatibacter aphrophilus NJ8700 8122568 YP_003008752.1 CDS NT05HA_2362 NC_012913.1 2297515 2298054 R disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B complement(2297515..2298054) Aggregatibacter aphrophilus NJ8700 8122569 YP_003008753.1 CDS nhaB NC_012913.1 2298097 2299647 R involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter complement(2298097..2299647) Aggregatibacter aphrophilus NJ8700 8122570 YP_003008754.1 CDS NT05HA_2364 NC_012913.1 2299852 2300577 D Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 2299852..2300577 Aggregatibacter aphrophilus NJ8700 8122571 YP_003008755.1 CDS NT05HA_2365 NC_012913.1 2300679 2301893 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(2300679..2301893) Aggregatibacter aphrophilus NJ8700 8122572 YP_003008756.1 CDS NT05HA_2366 NC_012913.1 2302010 2303317 D identified by Glimmer3; putative; menaquinone-specific isochorismate synthase 2302010..2303317 Aggregatibacter aphrophilus NJ8700 8122573 YP_003008757.1 CDS NT05HA_2367 NC_012913.1 2303308 2305014 D SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 2303308..2305014 Aggregatibacter aphrophilus NJ8700 8122574 YP_003008758.1 CDS NT05HA_2368 NC_012913.1 2305066 2305815 D catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase YfbB 2305066..2305815 Aggregatibacter aphrophilus NJ8700 8122575 YP_003008759.1 CDS rpsO NC_012913.1 2305912 2306181 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 2305912..2306181 Aggregatibacter aphrophilus NJ8700 8122576 YP_003008760.1 CDS NT05HA_2370 NC_012913.1 2306398 2307552 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 2306398..2307552 Aggregatibacter aphrophilus NJ8700 8122577 YP_003008761.1 CDS NT05HA_2372 NC_012913.1 2307557 2307673 R identified by Glimmer3; putative; protein SprT complement(2307557..2307673) Aggregatibacter aphrophilus NJ8700 8122578 YP_003008762.1 CDS NT05HA_2371 NC_012913.1 2307650 2308117 D identified by Glimmer3; putative; hypothetical protein 2307650..2308117 Aggregatibacter aphrophilus NJ8700 8122579 YP_003008763.1 CDS NT05HA_2373 NC_012913.1 2308278 2309516 D identified by Glimmer3; putative; serine transporter 2308278..2309516 Aggregatibacter aphrophilus NJ8700 8122580 YP_003008764.1 CDS NT05HA_2374 NC_012913.1 2309743 2310969 D identified by Glimmer3; putative; L-serine ammonia-lyase 2309743..2310969 Aggregatibacter aphrophilus NJ8700 8122581 YP_003008765.1 CDS NT05HA_2375 NC_012913.1 2311039 2311746 R identified by Glimmer3; putative; membrane protein complement(2311039..2311746) Aggregatibacter aphrophilus NJ8700 8122582 YP_003008766.1 CDS NT05HA_2376 NC_012913.1 2311971 2312282 R identified by Glimmer3; putative; hypothetical protein complement(2311971..2312282) Aggregatibacter aphrophilus NJ8700 8122583 YP_003008767.1 CDS NT05HA_2377 NC_012913.1 2312313 2312732 R identified by Glimmer3; putative; hypothetical protein complement(2312313..2312732) Aggregatibacter aphrophilus NJ8700 8122584 NT05HA_0019 tRNA NT05HA_0019 NC_012913.1 20156 20245 R tRNA-Ser complement(20156..20245) Aggregatibacter aphrophilus NJ8700 8123320 NT05HA_0074 tRNA NT05HA_0074 NC_012913.1 80274 80349 R tRNA-Val complement(80274..80349) Aggregatibacter aphrophilus NJ8700 8122478 NT05HA_0075 tRNA NT05HA_0075 NC_012913.1 80377 80452 R tRNA-Val complement(80377..80452) Aggregatibacter aphrophilus NJ8700 8122479 NT05HA_0076 tRNA NT05HA_0076 NC_012913.1 80490 80565 R tRNA-Val complement(80490..80565) Aggregatibacter aphrophilus NJ8700 8122480 NT05HA_0078 tRNA NT05HA_0078 NC_012913.1 82257 82332 D tRNA-Ala 82257..82332 Aggregatibacter aphrophilus NJ8700 8122482 NT05HA_0242 tRNA NT05HA_0242 NC_012913.1 234692 234768 R tRNA-Asp complement(234692..234768) Aggregatibacter aphrophilus NJ8700 8122715 NT05HA_0410 tRNA NT05HA_0410 NC_012913.1 418084 418160 D tRNA-Met 418084..418160 Aggregatibacter aphrophilus NJ8700 8123114 NT05HA_0411 tRNA NT05HA_0411 NC_012913.1 418165 418249 D tRNA-Leu 418165..418249 Aggregatibacter aphrophilus NJ8700 8123115 NT05HA_0412 tRNA NT05HA_0412 NC_012913.1 418278 418352 D tRNA-Gln 418278..418352 Aggregatibacter aphrophilus NJ8700 8123116 NT05HA_0413 tRNA NT05HA_0413 NC_012913.1 418390 418464 D tRNA-Gln 418390..418464 Aggregatibacter aphrophilus NJ8700 8123117 NT05HA_0442 tRNA NT05HA_0442 NC_012913.1 452903 452979 D tRNA-Ile 452903..452979 Aggregatibacter aphrophilus NJ8700 8121877 NT05HA_0443 tRNA NT05HA_0443 NC_012913.1 453075 453150 D tRNA-Ala 453075..453150 Aggregatibacter aphrophilus NJ8700 8121878 NT05HA_0586 tRNA NT05HA_0586 NC_012913.1 591281 591357 D tRNA-Arg 591281..591357 Aggregatibacter aphrophilus NJ8700 8121616 NT05HA_0587 tRNA NT05HA_0587 NC_012913.1 591389 591464 D tRNA-His 591389..591464 Aggregatibacter aphrophilus NJ8700 8121617 NT05HA_0588 tRNA NT05HA_0588 NC_012913.1 591467 591543 D tRNA-Pro 591467..591543 Aggregatibacter aphrophilus NJ8700 8121618 NT05HA_0589 tRNA NT05HA_0589 NC_012913.1 593327 593403 D tRNA-Ile 593327..593403 Aggregatibacter aphrophilus NJ8700 8121620 NT05HA_0590 tRNA NT05HA_0590 NC_012913.1 593499 593574 D tRNA-Ala 593499..593574 Aggregatibacter aphrophilus NJ8700 8121621 NT05HA_0614 tRNA NT05HA_0614 NC_012913.1 617344 617419 R tRNA-Gly complement(617344..617419) Aggregatibacter aphrophilus NJ8700 8121725 NT05HA_0870 tRNA NT05HA_0870 NC_012913.1 887422 887498 R tRNA-Val complement(887422..887498) Aggregatibacter aphrophilus NJ8700 8122843 NT05HA_0986 tRNA NT05HA_0986 NC_012913.1 1012898 1012974 R tRNA-Met complement(1012898..1012974) Aggregatibacter aphrophilus NJ8700 8122952 NT05HA_1018 tRNA NT05HA_1018 NC_012913.1 1040771 1040857 D tRNA-Leu 1040771..1040857 Aggregatibacter aphrophilus NJ8700 8121316 NT05HA_1019 tRNA NT05HA_1019 NC_012913.1 1040908 1040983 D tRNA-Lys 1040908..1040983 Aggregatibacter aphrophilus NJ8700 8121317 NT05HA_1052 tRNA NT05HA_1052 NC_012913.1 1064195 1064270 D tRNA-Lys 1064195..1064270 Aggregatibacter aphrophilus NJ8700 8121348 NT05HA_1134 tRNA NT05HA_1134 NC_012913.1 1141370 1141455 D tRNA-Leu 1141370..1141455 Aggregatibacter aphrophilus NJ8700 8123255 NT05HA_1212 tRNA NT05HA_1212 NC_012913.1 1222044 1222119 R tRNA-Asn complement(1222044..1222119) Aggregatibacter aphrophilus NJ8700 8122776 NT05HA_1286 tRNA NT05HA_1286 NC_012913.1 1295483 1295568 R tRNA-Leu complement(1295483..1295568) Aggregatibacter aphrophilus NJ8700 8122609 NT05HA_1339 tRNA NT05HA_1339 NC_012913.1 1354334 1354410 R tRNA-Lys complement(1354334..1354410) Aggregatibacter aphrophilus NJ8700 8122662 NT05HA_1340 tRNA NT05HA_1340 NC_012913.1 1354434 1354509 R tRNA-Lys complement(1354434..1354509) Aggregatibacter aphrophilus NJ8700 8122663 NT05HA_1341 tRNA NT05HA_1341 NC_012913.1 1354533 1354608 R tRNA-Lys complement(1354533..1354608) Aggregatibacter aphrophilus NJ8700 8122664 NT05HA_1395 tRNA NT05HA_1395 NC_012913.1 1401927 1402016 R tRNA-Ser complement(1401927..1402016) Aggregatibacter aphrophilus NJ8700 8122086 NT05HA_1401 tRNA NT05HA_1401 NC_012913.1 1409327 1409402 D tRNA-Gly 1409327..1409402 Aggregatibacter aphrophilus NJ8700 8122092 NT05HA_1402 tRNA NT05HA_1402 NC_012913.1 1409410 1409483 D tRNA-Cys 1409410..1409483 Aggregatibacter aphrophilus NJ8700 8122093 NT05HA_1403 tRNA NT05HA_1403 NC_012913.1 1409516 1409602 D tRNA-Leu 1409516..1409602 Aggregatibacter aphrophilus NJ8700 8122094 NT05HA_1410 tRNA NT05HA_1410 NC_012913.1 1417038 1417114 R tRNA-Met complement(1417038..1417114) Aggregatibacter aphrophilus NJ8700 8122101 NT05HA_1419 tRNA NT05HA_1419 NC_012913.1 1427013 1427088 R tRNA-Ala complement(1427013..1427088) Aggregatibacter aphrophilus NJ8700 8122110 NT05HA_1420 tRNA NT05HA_1420 NC_012913.1 1427184 1427260 R tRNA-Ile complement(1427184..1427260) Aggregatibacter aphrophilus NJ8700 8122111 NT05HA_1621 tRNA NT05HA_1621 NC_012913.1 1623861 1623936 R tRNA-Asn complement(1623861..1623936) Aggregatibacter aphrophilus NJ8700 8123017 NT05HA_1622 tRNA NT05HA_1622 NC_012913.1 1623941 1624016 R tRNA-Phe complement(1623941..1624016) Aggregatibacter aphrophilus NJ8700 8123018 NT05HA_1690 tRNA NT05HA_1690 NC_012913.1 1688771 1688847 D tRNA-Pro 1688771..1688847 Aggregatibacter aphrophilus NJ8700 8122297 NT05HA_1691 tRNA NT05HA_1691 NC_012913.1 1688881 1688957 D tRNA-Arg 1688881..1688957 Aggregatibacter aphrophilus NJ8700 8122298 NT05HA_1745 tRNA NT05HA_1745 NC_012913.1 1733978 1734053 R tRNA-Trp complement(1733978..1734053) Aggregatibacter aphrophilus NJ8700 8122352 NT05HA_1746 tRNA NT05HA_1746 NC_012913.1 1734090 1734166 R tRNA-Asp complement(1734090..1734166) Aggregatibacter aphrophilus NJ8700 8122353 NT05HA_1748 tRNA NT05HA_1748 NC_012913.1 1737880 1737955 R tRNA-Ala complement(1737880..1737955) Aggregatibacter aphrophilus NJ8700 8122117 NT05HA_1749 tRNA NT05HA_1749 NC_012913.1 1738051 1738127 R tRNA-Ile complement(1738051..1738127) Aggregatibacter aphrophilus NJ8700 8122118 NT05HA_1907 tRNA NT05HA_1907 NC_012913.1 1897121 1897214 D tRNA-Ser 1897121..1897214 Aggregatibacter aphrophilus NJ8700 8121955 NT05HA_1908 tRNA NT05HA_1908 NC_012913.1 1897232 1897308 D tRNA-Arg 1897232..1897308 Aggregatibacter aphrophilus NJ8700 8121956 NT05HA_1909 tRNA NT05HA_1909 NC_012913.1 1897363 1897439 D tRNA-Arg 1897363..1897439 Aggregatibacter aphrophilus NJ8700 8121957 NT05HA_1934 tRNA NT05HA_1934 NC_012913.1 1919963 1920038 R tRNA-Ala complement(1919963..1920038) Aggregatibacter aphrophilus NJ8700 8121983 NT05HA_1935 tRNA NT05HA_1935 NC_012913.1 1920134 1920210 R tRNA-Ile complement(1920134..1920210) Aggregatibacter aphrophilus NJ8700 8121984 NT05HA_1961 tRNA NT05HA_1961 NC_012913.1 1942483 1942573 R tRNA-Sec complement(1942483..1942573) Aggregatibacter aphrophilus NJ8700 8122011 NT05HA_2036 tRNA NT05HA_2036 NC_012913.1 2017197 2017272 D tRNA-Thr 2017197..2017272 Aggregatibacter aphrophilus NJ8700 8123195 NT05HA_2037 tRNA NT05HA_2037 NC_012913.1 2017302 2017386 D tRNA-Tyr 2017302..2017386 Aggregatibacter aphrophilus NJ8700 8123196 NT05HA_2038 tRNA NT05HA_2038 NC_012913.1 2017426 2017500 D tRNA-Gly 2017426..2017500 Aggregatibacter aphrophilus NJ8700 8123197 NT05HA_2039 tRNA NT05HA_2039 NC_012913.1 2017504 2017579 D tRNA-Thr 2017504..2017579 Aggregatibacter aphrophilus NJ8700 8123198 NT05HA_2132 tRNA NT05HA_2132 NC_012913.1 2105465 2105541 D tRNA-Ile 2105465..2105541 Aggregatibacter aphrophilus NJ8700 8121862 NT05HA_2133 tRNA NT05HA_2133 NC_012913.1 2105637 2105712 D tRNA-Ala 2105637..2105712 Aggregatibacter aphrophilus NJ8700 8121863 NT05HA_2323 tRNA NT05HA_2323 NC_012913.1 2263117 2263193 R tRNA-Met complement(2263117..2263193) Aggregatibacter aphrophilus NJ8700 8122530 NT05HA_2391 rRNA NT05HA_2391 NC_012913.1 451286 452812 D 16S ribosomal RNA 451286..452812 Aggregatibacter aphrophilus NJ8700 8121876 NT05HA_2385 rRNA NT05HA_2385 NC_012913.1 453484 456378 D 23S ribosomal RNA 453484..456378 Aggregatibacter aphrophilus NJ8700 8121879 NT05HA_2378 rRNA NT05HA_2378 NC_012913.1 456578 456692 D 5S ribosomal RNA 456578..456692 Aggregatibacter aphrophilus NJ8700 8121880 NT05HA_2392 rRNA NT05HA_2392 NC_012913.1 591710 593236 D 16S ribosomal RNA 591710..593236 Aggregatibacter aphrophilus NJ8700 8121619 NT05HA_2386 rRNA NT05HA_2386 NC_012913.1 593908 596802 D 23S ribosomal RNA 593908..596802 Aggregatibacter aphrophilus NJ8700 8121622 NT05HA_2380 rRNA NT05HA_2380 NC_012913.1 597002 597116 D 5S ribosomal RNA 597002..597116 Aggregatibacter aphrophilus NJ8700 8121623 NT05HA_2384 rRNA NT05HA_2384 NC_012913.1 1423471 1423585 D 5S ribosomal RNA 1423471..1423585 Aggregatibacter aphrophilus NJ8700 8122108 NT05HA_2390 rRNA NT05HA_2390 NC_012913.1 1423785 1426679 D 23S ribosomal RNA 1423785..1426679 Aggregatibacter aphrophilus NJ8700 8122109 NT05HA_2396 rRNA NT05HA_2396 NC_012913.1 1427351 1428877 D 16S ribosomal RNA 1427351..1428877 Aggregatibacter aphrophilus NJ8700 8122112 NT05HA_2379 rRNA NT05HA_2379 NC_012913.1 1734173 1734287 D 5S ribosomal RNA 1734173..1734287 Aggregatibacter aphrophilus NJ8700 8122354 NT05HA_2383 rRNA NT05HA_2383 NC_012913.1 1734338 1734452 D 5S ribosomal RNA 1734338..1734452 Aggregatibacter aphrophilus NJ8700 8122115 NT05HA_2389 rRNA NT05HA_2389 NC_012913.1 1734652 1737546 D 23S ribosomal RNA 1734652..1737546 Aggregatibacter aphrophilus NJ8700 8122116 NT05HA_2395 rRNA NT05HA_2395 NC_012913.1 1738218 1739744 D 16S ribosomal RNA 1738218..1739744 Aggregatibacter aphrophilus NJ8700 8122119 NT05HA_2382 rRNA NT05HA_2382 NC_012913.1 1916421 1916535 D 5S ribosomal RNA 1916421..1916535 Aggregatibacter aphrophilus NJ8700 8121981 NT05HA_2388 rRNA NT05HA_2388 NC_012913.1 1916735 1919629 D 23S ribosomal RNA 1916735..1919629 Aggregatibacter aphrophilus NJ8700 8121982 NT05HA_2394 rRNA NT05HA_2394 NC_012913.1 1920301 1921827 D 16S ribosomal RNA 1920301..1921827 Aggregatibacter aphrophilus NJ8700 8121985 NT05HA_2393 rRNA NT05HA_2393 NC_012913.1 2103848 2105374 D 16S ribosomal RNA 2103848..2105374 Aggregatibacter aphrophilus NJ8700 8121861 NT05HA_2387 rRNA NT05HA_2387 NC_012913.1 2106046 2108940 D 23S ribosomal RNA 2106046..2108940 Aggregatibacter aphrophilus NJ8700 8121864 NT05HA_2381 rRNA NT05HA_2381 NC_012913.1 2109140 2109254 D 5S ribosomal RNA 2109140..2109254 Aggregatibacter aphrophilus NJ8700 8121865