-- dump date 20140205_000728 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 668336000001 SEQ_END SEQ_END NC_013416.1 2105764 2105764 DR NC_013416.1; contig end 2105764..2105764 Aggregatibacter actinomycetemcomitans D11S-1 668336000002 SEQ_END SEQ_END NC_013438.1 31045 31045 DR NC_013438.1; contig end 31045..31045 Aggregatibacter actinomycetemcomitans D11S-1 668336000003 SEQ_END SEQ_END NC_013597.1 43970 43970 DR NC_013597.1; contig end 43970..43970 Aggregatibacter phage S1249 668336000004 SEQ_END SEQ_END NC_014629.1 23886 23886 DR NC_014629.1; contig end 23886..23886 Aggregatibacter actinomycetemcomitans D11S-1 YP_003254644.1 CDS D11S_0001 NC_013416.1 2105476 335 R identified by Glimmer3; putative; putative sulfate transport protein CysZ complement(join(2105476..2105764,1..335)) Aggregatibacter actinomycetemcomitans D11S-1 8537838 YP_003254645.1 CDS D11S_0002 NC_013416.1 351 581 R identified by Glimmer3; putative; hypothetical protein complement(351..581) Aggregatibacter actinomycetemcomitans D11S-1 8535721 YP_003254646.1 CDS D11S_0003 NC_013416.1 578 1498 R identified by Glimmer3; putative; Mu phage DNA transposition protein B complement(578..1498) Aggregatibacter actinomycetemcomitans D11S-1 8535722 YP_003254647.1 CDS D11S_0004 NC_013416.1 1534 3552 R identified by Glimmer3; putative; transposase complement(1534..3552) Aggregatibacter actinomycetemcomitans D11S-1 8535723 YP_003254648.1 CDS D11S_0005 NC_013416.1 3567 3818 R identified by Glimmer3; putative; putative DNA-binding protein complement(3567..3818) Aggregatibacter actinomycetemcomitans D11S-1 8535724 YP_003254649.1 CDS D11S_0006 NC_013416.1 4314 4727 D identified by Glimmer3; putative; putative transcription regulator 4314..4727 Aggregatibacter actinomycetemcomitans D11S-1 8535725 YP_003254650.1 CDS D11S_0007 NC_013416.1 4746 4862 R identified by Glimmer3; putative; hypothetical protein complement(4746..4862) Aggregatibacter actinomycetemcomitans D11S-1 8535726 YP_003254651.1 CDS D11S_0008 NC_013416.1 5001 6176 R identified by Glimmer3; putative; 8-amino-7-oxononanoate synthase complement(5001..6176) Aggregatibacter actinomycetemcomitans D11S-1 8535727 YP_003254652.1 CDS D11S_0009 NC_013416.1 6169 7299 R identified by Glimmer3; putative; adenosylmethionine-8-amino-7-oxononanoate transaminase complement(6169..7299) Aggregatibacter actinomycetemcomitans D11S-1 8535728 YP_003254653.1 CDS D11S_0010 NC_013416.1 7263 7457 R identified by Glimmer3; putative; adenosylmethionine-8-amino-7-oxononanoate transaminase complement(7263..7457) Aggregatibacter actinomycetemcomitans D11S-1 8535729 YP_003254654.1 CDS psd NC_013416.1 7680 8549 D catalyzes the decarboxylation of phosphatidyl-L-serine to phosphatidylethanoleamine; phosphatidylserine decarboxylase 7680..8549 Aggregatibacter actinomycetemcomitans D11S-1 8535730 YP_003254655.1 CDS D11S_0012 NC_013416.1 8575 9207 D identified by Glimmer3; putative; fkbp-type peptidyl-prolyl cis-trans isomerase fkpa 8575..9207 Aggregatibacter actinomycetemcomitans D11S-1 8535731 YP_003254656.1 CDS D11S_0013 NC_013416.1 9271 9513 R identified by Glimmer3; putative; glutamate 5-kinase complement(9271..9513) Aggregatibacter actinomycetemcomitans D11S-1 8535732 YP_003254657.1 CDS D11S_0014 NC_013416.1 9507 10007 R identified by Glimmer3; putative; glutamate 5-kinase complement(9507..10007) Aggregatibacter actinomycetemcomitans D11S-1 8535733 YP_003254658.1 CDS D11S_0015 NC_013416.1 10009 10185 R identified by Glimmer3; putative; hypothetical protein complement(10009..10185) Aggregatibacter actinomycetemcomitans D11S-1 8535734 YP_003254659.1 CDS D11S_0016 NC_013416.1 10243 11028 D identified by Glimmer3; putative; YjjP 10243..11028 Aggregatibacter actinomycetemcomitans D11S-1 8535735 YP_003254660.1 CDS D11S_0017 NC_013416.1 11030 11494 D identified by Glimmer3; putative; YjjB 11030..11494 Aggregatibacter actinomycetemcomitans D11S-1 8535736 YP_003254661.1 CDS D11S_0018 NC_013416.1 11534 12019 D identified by Glimmer3; putative; hypothetical protein 11534..12019 Aggregatibacter actinomycetemcomitans D11S-1 8535737 YP_003254662.1 CDS D11S_0019 NC_013416.1 12139 13449 R identified by Glimmer3; putative; inner membrane protein YtfL complement(12139..13449) Aggregatibacter actinomycetemcomitans D11S-1 8535738 YP_003254663.1 CDS D11S_0020 NC_013416.1 13403 13543 D identified by Glimmer3; putative; hypothetical protein 13403..13543 Aggregatibacter actinomycetemcomitans D11S-1 8535739 YP_003254664.1 CDS D11S_0021 NC_013416.1 13540 14064 R identified by Glimmer3; putative; hypothetical protein complement(13540..14064) Aggregatibacter actinomycetemcomitans D11S-1 8535740 YP_003254665.1 CDS D11S_0022 NC_013416.1 14096 14878 R identified by Glimmer3; putative; putative deoxyribonuclease complement(14096..14878) Aggregatibacter actinomycetemcomitans D11S-1 8535741 YP_003254666.1 CDS D11S_0023 NC_013416.1 14882 15865 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' complement(14882..15865) Aggregatibacter actinomycetemcomitans D11S-1 8535742 YP_003254667.1 CDS tmk NC_013416.1 15862 16491 R catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to thymidine monophosphate (dTMP) to form thymidine diphosphate (dTDP); thymidylate kinase complement(15862..16491) Aggregatibacter actinomycetemcomitans D11S-1 8535743 YP_003254668.1 CDS D11S_0025 NC_013416.1 16493 17536 R identified by Glimmer3; putative; pyrimidine regulatory protein PyrR complement(16493..17536) Aggregatibacter actinomycetemcomitans D11S-1 8535744 YP_003254669.1 CDS D11S_0026 NC_013416.1 17675 18013 R identified by Glimmer3; putative; nitrogen regulatory protein P-II complement(17675..18013) Aggregatibacter actinomycetemcomitans D11S-1 8535745 YP_003254670.1 CDS D11S_0027 NC_013416.1 18089 18847 R identified by Glimmer3; putative; GlpR protein complement(18089..18847) Aggregatibacter actinomycetemcomitans D11S-1 8535746 YP_003254671.1 CDS D11S_0028 NC_013416.1 18995 19945 D identified by Glimmer3; putative; 3-hydroxyisobutyrate dehydrogenase 18995..19945 Aggregatibacter actinomycetemcomitans D11S-1 8535747 YP_003254672.1 CDS D11S_0029 NC_013416.1 19948 21192 D identified by Glimmer3; putative; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 19948..21192 Aggregatibacter actinomycetemcomitans D11S-1 8535748 YP_003254673.1 CDS D11S_0030 NC_013416.1 21189 21821 D identified by Glimmer3; putative; putative aldolase 21189..21821 Aggregatibacter actinomycetemcomitans D11S-1 8535749 YP_003254674.1 CDS D11S_0031 NC_013416.1 21824 22600 D identified by Glimmer3; putative; hydroxypyruvate isomerase 21824..22600 Aggregatibacter actinomycetemcomitans D11S-1 8535750 YP_003254675.1 CDS D11S_0032 NC_013416.1 22689 24041 D identified by Glimmer3; putative; GntT protein 22689..24041 Aggregatibacter actinomycetemcomitans D11S-1 8535751 YP_003254676.1 CDS D11S_0033 NC_013416.1 24066 25406 D identified by Glimmer3; putative; phospholipase/carboxylesterase 24066..25406 Aggregatibacter actinomycetemcomitans D11S-1 8535752 YP_003254677.1 CDS D11S_0034 NC_013416.1 25424 26116 D identified by Glimmer3; putative; putative cyclase 25424..26116 Aggregatibacter actinomycetemcomitans D11S-1 8535753 YP_003254678.1 CDS D11S_0035 NC_013416.1 26164 27960 D identified by Glimmer3; putative; Kmt1 26164..27960 Aggregatibacter actinomycetemcomitans D11S-1 8535754 YP_003254679.1 CDS D11S_0036 NC_013416.1 28156 28974 D identified by Glimmer3; putative; phosphatase YbhA 28156..28974 Aggregatibacter actinomycetemcomitans D11S-1 8535755 YP_003254680.1 CDS D11S_0037 NC_013416.1 29180 31780 R This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS complement(29180..31780) Aggregatibacter actinomycetemcomitans D11S-1 8535756 YP_003254681.1 CDS D11S_0038 NC_013416.1 31865 32911 R identified by Glimmer3; putative; hypothetical protein complement(31865..32911) Aggregatibacter actinomycetemcomitans D11S-1 8535757 YP_003254682.1 CDS D11S_0039 NC_013416.1 33098 33856 R identified by Glimmer3; putative; DNA polymerase I complement(33098..33856) Aggregatibacter actinomycetemcomitans D11S-1 8535758 YP_003254683.1 CDS D11S_0040 NC_013416.1 33858 34955 R catalyzes the formation of 5-methyl-uridine at position 54 in all tRNAs; tRNA (uracil-5-)-methyltransferase complement(33858..34955) Aggregatibacter actinomycetemcomitans D11S-1 8535759 YP_003254684.1 CDS D11S_0041 NC_013416.1 35025 35354 R identified by Glimmer3; putative; hypothetical protein complement(35025..35354) Aggregatibacter actinomycetemcomitans D11S-1 8535760 YP_003254685.1 CDS D11S_0042 NC_013416.1 35414 36031 R identified by Glimmer3; putative; thiol:disulfide interchange protein DsbA complement(35414..36031) Aggregatibacter actinomycetemcomitans D11S-1 8535761 YP_003254686.1 CDS D11S_0043 NC_013416.1 36050 36316 R identified by Glimmer3; putative; YihD complement(36050..36316) Aggregatibacter actinomycetemcomitans D11S-1 8535762 YP_003254687.1 CDS mobA NC_013416.1 36400 36984 D in Escherichia coli MobA links a guanosine 5'-phosphate to molydopterin to form molybdopterin guanine dinucleotide during molybdenum cofactor biosynthesis; molybdopterin-guanine dinucleotide biosynthesis protein MobA 36400..36984 Aggregatibacter actinomycetemcomitans D11S-1 8535763 YP_003254688.1 CDS D11S_0045 NC_013416.1 37083 37613 D identified by Glimmer3; putative; DNA polymerase III subunit delta' 37083..37613 Aggregatibacter actinomycetemcomitans D11S-1 8535764 YP_003254689.1 CDS D11S_0046 NC_013416.1 37725 39254 D phosphoenolpyruvate (PEP)-dependent, sugar transporting phosphotransferase system; catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane; IIA is phosphorylated by phospho-HP which then transfers the phosphoryl group to the IIB componentr; bifunctional PTS system fructose-specific transporter subunit IIA/HPr protein 37725..39254 Aggregatibacter actinomycetemcomitans D11S-1 8535765 YP_003254690.1 CDS fruK NC_013416.1 39257 40198 D converts fructose-1-phosphate and ATP to fructose-1,6-bisphosphate and ADP; highly specific for fructose-1-phopshate; similar to PfkB; forms homodimers; 1-phosphofructokinase 39257..40198 Aggregatibacter actinomycetemcomitans D11S-1 8535766 YP_003254691.1 CDS D11S_0048 NC_013416.1 40203 41867 D identified by Glimmer3; putative; PTS system fructose-specific transporter subunit IIBC 40203..41867 Aggregatibacter actinomycetemcomitans D11S-1 8535767 YP_003254692.1 CDS D11S_0049 NC_013416.1 41889 42167 D identified by Glimmer3; putative; hypothetical protein 41889..42167 Aggregatibacter actinomycetemcomitans D11S-1 8535768 YP_003254693.1 CDS D11S_0050 NC_013416.1 42202 42333 D identified by Glimmer3; putative; hypothetical protein 42202..42333 Aggregatibacter actinomycetemcomitans D11S-1 8535769 YP_003254694.1 CDS D11S_0051 NC_013416.1 42385 42531 R identified by Glimmer3; putative; LysR family transcriptional regulator complement(42385..42531) Aggregatibacter actinomycetemcomitans D11S-1 8535770 YP_003254695.1 CDS D11S_0052 NC_013416.1 42552 42884 R identified by Glimmer3; putative; LysR family transcriptional regulator complement(42552..42884) Aggregatibacter actinomycetemcomitans D11S-1 8535771 YP_003254696.1 CDS D11S_0053 NC_013416.1 42899 43450 D identified by Glimmer3; putative; NAD(P)H dehydrogenase 42899..43450 Aggregatibacter actinomycetemcomitans D11S-1 8535772 YP_003254697.1 CDS D11S_0054 NC_013416.1 43532 43870 D identified by Glimmer3; putative; hypothetical protein 43532..43870 Aggregatibacter actinomycetemcomitans D11S-1 8535773 YP_003254698.1 CDS D11S_0055 NC_013416.1 44016 44720 D identified by Glimmer3; putative; Antibiotic biosynthesis monooxygenase 44016..44720 Aggregatibacter actinomycetemcomitans D11S-1 8535774 YP_003254699.1 CDS secE NC_013416.1 45162 45572 D forms a complex with SecY and SecG; SecYEG forms a putative protein-conducting channel to which secA binds and translocates targeted polypeptides across the cytoplasmic membrane, a process driven by ATP and a proton-motive force; preprotein translocase subunit SecE 45162..45572 Aggregatibacter actinomycetemcomitans D11S-1 8535775 YP_003254700.1 CDS D11S_0057 NC_013416.1 45574 46125 D identified by Glimmer3; putative; transcription termination/antitermination factor NusG 45574..46125 Aggregatibacter actinomycetemcomitans D11S-1 8535776 YP_003254701.1 CDS rplK NC_013416.1 46281 46709 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 46281..46709 Aggregatibacter actinomycetemcomitans D11S-1 8535777 YP_003254702.1 CDS rplA NC_013416.1 46714 47403 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 46714..47403 Aggregatibacter actinomycetemcomitans D11S-1 8535778 YP_003254703.1 CDS D11S_0060 NC_013416.1 47418 47594 D identified by Glimmer3; putative; hypothetical protein 47418..47594 Aggregatibacter actinomycetemcomitans D11S-1 8535779 YP_003254704.1 CDS rplJ NC_013416.1 47765 48256 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 47765..48256 Aggregatibacter actinomycetemcomitans D11S-1 8535780 YP_003254705.1 CDS rplL NC_013416.1 48308 48679 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 48308..48679 Aggregatibacter actinomycetemcomitans D11S-1 8535781 YP_003254706.1 CDS rpoB NC_013416.1 48950 52978 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta 48950..52978 Aggregatibacter actinomycetemcomitans D11S-1 8535782 YP_003254707.1 CDS D11S_0064 NC_013416.1 53083 57351 D DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' 53083..57351 Aggregatibacter actinomycetemcomitans D11S-1 8535783 YP_003254708.1 CDS rpsQ NC_013416.1 58114 58371 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(58114..58371) Aggregatibacter actinomycetemcomitans D11S-1 8535784 YP_003254709.1 CDS D11S_0066 NC_013416.1 58371 58562 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(58371..58562) Aggregatibacter actinomycetemcomitans D11S-1 8535785 YP_003254710.1 CDS D11S_0067 NC_013416.1 58562 58972 R identified by Glimmer3; putative; 50S ribosomal protein L16 complement(58562..58972) Aggregatibacter actinomycetemcomitans D11S-1 8535786 YP_003254711.1 CDS rpsC NC_013416.1 58986 59693 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(58986..59693) Aggregatibacter actinomycetemcomitans D11S-1 8535787 YP_003254712.1 CDS rplV NC_013416.1 59710 60042 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(59710..60042) Aggregatibacter actinomycetemcomitans D11S-1 8535788 YP_003254713.1 CDS D11S_0070 NC_013416.1 60053 60199 R identified by Glimmer3; putative; 30S ribosomal protein S19 complement(60053..60199) Aggregatibacter actinomycetemcomitans D11S-1 8535789 YP_003254714.1 CDS rplB NC_013416.1 60354 61175 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(60354..61175) Aggregatibacter actinomycetemcomitans D11S-1 8535790 YP_003254715.1 CDS rplW NC_013416.1 61196 61498 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(61196..61498) Aggregatibacter actinomycetemcomitans D11S-1 8535791 YP_003254716.1 CDS rplD NC_013416.1 61495 62097 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(61495..62097) Aggregatibacter actinomycetemcomitans D11S-1 8535792 YP_003254717.1 CDS rplC NC_013416.1 62113 62739 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(62113..62739) Aggregatibacter actinomycetemcomitans D11S-1 8535793 YP_003254718.1 CDS rpsJ NC_013416.1 62756 63067 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(62756..63067) Aggregatibacter actinomycetemcomitans D11S-1 8535794 YP_003254719.1 CDS D11S_0076 NC_013416.1 63319 64215 R identified by Glimmer3; putative; putative HTH-type transcriptional regulator complement(63319..64215) Aggregatibacter actinomycetemcomitans D11S-1 8535795 YP_003254720.1 CDS D11S_0077 NC_013416.1 64553 65143 D identified by Glimmer3; putative; acetyl-CoA:acetoacetyl-CoA transferase subunit alpha 64553..65143 Aggregatibacter actinomycetemcomitans D11S-1 8535796 YP_003254721.1 CDS D11S_0078 NC_013416.1 65155 65820 D identified by Glimmer3; putative; membrane component of ABC transporter FtsEX 65155..65820 Aggregatibacter actinomycetemcomitans D11S-1 8535797 YP_003254722.1 CDS D11S_0079 NC_013416.1 65823 67166 D identified by Glimmer3; putative; short chain fatty acids transporter 65823..67166 Aggregatibacter actinomycetemcomitans D11S-1 8535798 YP_003254723.1 CDS D11S_0080 NC_013416.1 67184 68365 D identified by Glimmer3; putative; acetyl-CoA acetyltransferase 67184..68365 Aggregatibacter actinomycetemcomitans D11S-1 8535799 YP_003254724.1 CDS D11S_0081 NC_013416.1 68463 68930 R identified by Glimmer3; putative; carbamate kinase complement(68463..68930) Aggregatibacter actinomycetemcomitans D11S-1 8535800 YP_003254725.1 CDS D11S_0082 NC_013416.1 69021 70550 R identified by Glimmer3; putative; C4-dicarboxylate anaerobic carrier DcuC complement(69021..70550) Aggregatibacter actinomycetemcomitans D11S-1 8535801 YP_003254726.1 CDS D11S_0083 NC_013416.1 70667 71599 R reversible synthesis of carbamate and ATP from carbamoyl phosphate and ADP; carbamate kinase complement(70667..71599) Aggregatibacter actinomycetemcomitans D11S-1 8535802 YP_003254727.1 CDS D11S_0084 NC_013416.1 71609 72613 R identified by Glimmer3; putative; ornithine carbamoyltransferase complement(71609..72613) Aggregatibacter actinomycetemcomitans D11S-1 8535803 YP_003254728.1 CDS D11S_0085 NC_013416.1 72856 74247 D identified by Glimmer3; putative; EriC protein 72856..74247 Aggregatibacter actinomycetemcomitans D11S-1 8535804 YP_003254729.1 CDS D11S_0086 NC_013416.1 74250 75233 D identified by Glimmer3; putative; tRNA-dihydrouridine synthase A 74250..75233 Aggregatibacter actinomycetemcomitans D11S-1 8535805 YP_003254730.1 CDS D11S_0087 NC_013416.1 75289 76281 R catalyzes the formation of asparagine from aspartate and ammonia; asparagine synthetase AsnA complement(75289..76281) Aggregatibacter actinomycetemcomitans D11S-1 8535806 YP_003254731.1 CDS D11S_0088 NC_013416.1 76447 76899 D transcriptional repressor of asnA which codes for aspartate-ammonia ligase; DNA-binding transcriptional regulator AsnC 76447..76899 Aggregatibacter actinomycetemcomitans D11S-1 8535807 YP_003254732.1 CDS D11S_0089 NC_013416.1 76933 77691 D catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1-phosphate; involved in the pyrimidine salvage pathway; uridine phosphorylase 76933..77691 Aggregatibacter actinomycetemcomitans D11S-1 8535808 YP_003254733.1 CDS D11S_0090 NC_013416.1 77828 78889 R identified by Glimmer3; putative; PerM complement(77828..78889) Aggregatibacter actinomycetemcomitans D11S-1 8535809 YP_003254734.1 CDS D11S_0091 NC_013416.1 78963 79313 D identified by Glimmer3; putative; arsenate reductase 78963..79313 Aggregatibacter actinomycetemcomitans D11S-1 8535810 YP_003254735.1 CDS D11S_0092 NC_013416.1 79417 79779 R identified by Glimmer3; putative; hypothetical protein complement(79417..79779) Aggregatibacter actinomycetemcomitans D11S-1 8535811 YP_003254736.1 CDS D11S_0093 NC_013416.1 79730 80014 R identified by Glimmer3; putative; hypothetical protein complement(79730..80014) Aggregatibacter actinomycetemcomitans D11S-1 8535812 YP_003254737.1 CDS rimO NC_013416.1 80223 81554 D catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; ribosomal protein S12 methylthiotransferase 80223..81554 Aggregatibacter actinomycetemcomitans D11S-1 8535813 YP_003254738.1 CDS D11S_0095 NC_013416.1 81532 82083 D identified by Glimmer3; putative; low molecular weight protein-tyrosine-phosphatase yfkj 81532..82083 Aggregatibacter actinomycetemcomitans D11S-1 8535814 YP_003254739.1 CDS D11S_0096 NC_013416.1 82210 82428 D identified by Glimmer3; putative; hypothetical protein 82210..82428 Aggregatibacter actinomycetemcomitans D11S-1 8535815 YP_003254740.1 CDS D11S_0097 NC_013416.1 82512 83108 R identified by Glimmer3; putative; fkbp-type peptidyl-prolyl cis-trans isomerase slyd complement(82512..83108) Aggregatibacter actinomycetemcomitans D11S-1 8535816 YP_003254741.1 CDS D11S_0098 NC_013416.1 83203 83922 R identified by Glimmer3; putative; hypothetical protein complement(83203..83922) Aggregatibacter actinomycetemcomitans D11S-1 8535817 YP_003254742.1 CDS D11S_0099 NC_013416.1 83973 84407 R identified by Glimmer3; putative; hypothetical protein complement(83973..84407) Aggregatibacter actinomycetemcomitans D11S-1 8535818 YP_003254743.1 CDS D11S_0100 NC_013416.1 84502 84897 R identified by Glimmer3; putative; large conductance mechanosensitive channel complement(84502..84897) Aggregatibacter actinomycetemcomitans D11S-1 8535819 YP_003254744.1 CDS trkA NC_013416.1 85007 86383 R involved in potassium uptake; found to be peripherally associated with the inner membrane in Escherichia coli; contains an NAD-binding domain; potassium transporter peripheral membrane component complement(85007..86383) Aggregatibacter actinomycetemcomitans D11S-1 8535820 YP_003254745.1 CDS D11S_0102 NC_013416.1 86407 87762 R identified by Glimmer3; putative; methionyl-tRNA formyltransferase complement(86407..87762) Aggregatibacter actinomycetemcomitans D11S-1 8535821 YP_003254746.1 CDS fmt NC_013416.1 87762 88718 R modifies the free amino group of the aminoacyl moiety of methionyl-tRNA(fMet) which is important in translation initiation; inactivation of this gene in Escherichia coli severely impairs growth; methionyl-tRNA formyltransferase complement(87762..88718) Aggregatibacter actinomycetemcomitans D11S-1 8535822 YP_003254747.1 CDS def NC_013416.1 88784 89296 R cleaves off formyl group from N-terminal methionine residues of newly synthesized proteins; binds iron(2+); peptide deformylase complement(88784..89296) Aggregatibacter actinomycetemcomitans D11S-1 8535823 YP_003254749.1 CDS D11S_0111 NC_013416.1 95222 95779 R Converts the D-glycero-beta-D-manno-heptose 1,7-bisphosphate intermediate into D-glycero-beta-D-manno-heptose 1-phosphate; D,D-heptose 1,7-bisphosphate phosphatase complement(95222..95779) Aggregatibacter actinomycetemcomitans D11S-1 8535830 YP_003254750.1 CDS metN NC_013416.1 95976 97013 D part of the metNIQ transport system for methionine; DL-methionine transporter ATP-binding subunit 95976..97013 Aggregatibacter actinomycetemcomitans D11S-1 8535831 YP_003254751.1 CDS D11S_0113 NC_013416.1 97003 97680 D identified by Glimmer3; putative; D-methionine transport system permease MetI 97003..97680 Aggregatibacter actinomycetemcomitans D11S-1 8535832 YP_003254752.1 CDS D11S_0114 NC_013416.1 97715 98557 D identified by Glimmer3; putative; D-methionine-binding lipoprotein MetQ 97715..98557 Aggregatibacter actinomycetemcomitans D11S-1 8535833 YP_003254753.1 CDS D11S_0115 NC_013416.1 98663 99160 D identified by Glimmer3; putative; PEBP family protein 98663..99160 Aggregatibacter actinomycetemcomitans D11S-1 8535834 YP_003254754.1 CDS D11S_0116 NC_013416.1 99279 99755 D identified by Glimmer3; putative; TrmH family RNA methyltransferase 99279..99755 Aggregatibacter actinomycetemcomitans D11S-1 8535835 YP_003254755.1 CDS D11S_0117 NC_013416.1 99851 100726 R identified by Glimmer3; putative; LapB complement(99851..100726) Aggregatibacter actinomycetemcomitans D11S-1 8535836 YP_003254756.1 CDS D11S_0118 NC_013416.1 100736 100849 R identified by Glimmer3; putative; hypothetical protein complement(100736..100849) Aggregatibacter actinomycetemcomitans D11S-1 8535837 YP_003254757.1 CDS engB NC_013416.1 100859 101473 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 100859..101473 Aggregatibacter actinomycetemcomitans D11S-1 8535838 YP_003254758.1 CDS D11S_0120 NC_013416.1 101588 102454 D identified by Glimmer3; putative; putative Mg chelatase-like protein 101588..102454 Aggregatibacter actinomycetemcomitans D11S-1 8535839 YP_003254759.1 CDS D11S_0121 NC_013416.1 102557 104389 D identified by Glimmer3; putative; hypothetical protein 102557..104389 Aggregatibacter actinomycetemcomitans D11S-1 8535840 YP_003254760.1 CDS D11S_0122 NC_013416.1 104398 105486 D identified by Glimmer3; putative; putative phage associated protein 104398..105486 Aggregatibacter actinomycetemcomitans D11S-1 8535841 YP_003254761.1 CDS D11S_0123 NC_013416.1 105483 106481 D identified by Glimmer3; putative; RelA/SpoT 105483..106481 Aggregatibacter actinomycetemcomitans D11S-1 8535842 YP_003254762.1 CDS D11S_0124 NC_013416.1 106696 109563 D identified by Glimmer3; putative; helicase IV 106696..109563 Aggregatibacter actinomycetemcomitans D11S-1 8535843 YP_003254763.1 CDS D11S_0125 NC_013416.1 109593 110831 D identified by Glimmer3; putative; hypothetical protein 109593..110831 Aggregatibacter actinomycetemcomitans D11S-1 8535844 YP_003254764.1 CDS D11S_0126 NC_013416.1 110785 111570 D identified by Glimmer3; putative; hypothetical protein 110785..111570 Aggregatibacter actinomycetemcomitans D11S-1 8535845 YP_003254765.1 CDS D11S_0127 NC_013416.1 111730 111942 D identified by Glimmer3; putative; XRE family transcriptional regulator 111730..111942 Aggregatibacter actinomycetemcomitans D11S-1 8535846 YP_003254766.1 CDS D11S_0128 NC_013416.1 111954 112628 D identified by Glimmer3; putative; hypothetical protein 111954..112628 Aggregatibacter actinomycetemcomitans D11S-1 8535847 YP_003254767.1 CDS D11S_0129 NC_013416.1 112708 113184 R identified by Glimmer3; putative; hypothetical protein complement(112708..113184) Aggregatibacter actinomycetemcomitans D11S-1 8535848 YP_003254768.1 CDS D11S_0130 NC_013416.1 113314 115935 R identified by Glimmer3; putative; type III restriction enzyme complement(113314..115935) Aggregatibacter actinomycetemcomitans D11S-1 8535849 YP_003254769.1 CDS D11S_0131 NC_013416.1 115945 117585 R identified by Glimmer3; putative; adenine specific DNA methylase complement(115945..117585) Aggregatibacter actinomycetemcomitans D11S-1 8535850 YP_003254770.1 CDS D11S_0132 NC_013416.1 117598 117810 R identified by Glimmer3; putative; hypothetical protein complement(117598..117810) Aggregatibacter actinomycetemcomitans D11S-1 8535851 YP_003254771.1 CDS D11S_0133 NC_013416.1 117931 119355 R identified by Glimmer3; putative; hypothetical protein complement(117931..119355) Aggregatibacter actinomycetemcomitans D11S-1 8535852 YP_003254772.1 CDS D11S_0134 NC_013416.1 119352 120470 R identified by Glimmer3; putative; hypothetical protein complement(119352..120470) Aggregatibacter actinomycetemcomitans D11S-1 8535853 YP_003254773.1 CDS D11S_0135 NC_013416.1 120428 121321 R identified by Glimmer3; putative; Transposition helper protein complement(120428..121321) Aggregatibacter actinomycetemcomitans D11S-1 8535854 YP_003254774.1 CDS D11S_0136 NC_013416.1 121321 123240 R identified by Glimmer3; putative; Putative transposase complement(121321..123240) Aggregatibacter actinomycetemcomitans D11S-1 8535855 YP_003254775.1 CDS D11S_0137 NC_013416.1 123233 123895 R identified by Glimmer3; putative; TnsA endonuclease complement(123233..123895) Aggregatibacter actinomycetemcomitans D11S-1 8535856 YP_003254776.1 CDS D11S_0138 NC_013416.1 124031 124735 D identified by Glimmer3; putative; putative Mg chelatase-like protein 124031..124735 Aggregatibacter actinomycetemcomitans D11S-1 8535857 YP_003254777.1 CDS D11S_0139 NC_013416.1 124747 125574 R identified by Glimmer3; putative; divergent polysaccharide deacetylase superfamily protein complement(124747..125574) Aggregatibacter actinomycetemcomitans D11S-1 8535858 YP_003254778.1 CDS D11S_0140 NC_013416.1 125571 126788 R identified by Glimmer3; putative; NlpD protein complement(125571..126788) Aggregatibacter actinomycetemcomitans D11S-1 8535859 YP_003254779.1 CDS D11S_0141 NC_013416.1 127039 128697 R identified by Glimmer3; putative; phosphoglucomutase/phosphomannomutase complement(127039..128697) Aggregatibacter actinomycetemcomitans D11S-1 8535860 YP_003254780.1 CDS gpmA NC_013416.1 129003 129686 D 2,3-bisphosphoglycerate-dependent; catalyzes the interconversion of 2-phosphoglycerate to 3-phosphoglycerate; phosphoglyceromutase 129003..129686 Aggregatibacter actinomycetemcomitans D11S-1 8535861 YP_003254781.1 CDS D11S_0143 NC_013416.1 129771 130265 R identified by Glimmer3; putative; hypothetical protein complement(129771..130265) Aggregatibacter actinomycetemcomitans D11S-1 8535862 YP_003254782.1 CDS D11S_0144 NC_013416.1 130283 131059 R identified by Glimmer3; putative; lipoprotein VacJ complement(130283..131059) Aggregatibacter actinomycetemcomitans D11S-1 8535863 YP_003254783.1 CDS D11S_0145 NC_013416.1 131125 132708 R identified by Glimmer3; putative; nickel ABC transporter periplasmic nickel-binding protein complement(131125..132708) Aggregatibacter actinomycetemcomitans D11S-1 8535864 YP_003254784.1 CDS hslU NC_013416.1 132774 134105 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(132774..134105) Aggregatibacter actinomycetemcomitans D11S-1 8535865 YP_003254785.1 CDS D11S_0147 NC_013416.1 134126 134653 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(134126..134653) Aggregatibacter actinomycetemcomitans D11S-1 8535866 YP_003254786.1 CDS D11S_0148 NC_013416.1 134625 134765 D identified by Glimmer3; putative; hypothetical protein 134625..134765 Aggregatibacter actinomycetemcomitans D11S-1 8535867 YP_003254787.1 CDS aphA NC_013416.1 134868 135575 D Class B; non-specific; catalyzes the dephosphorylation of organic phosphomonoesters; also has phosphotransferase activity; acid phosphatase/phosphotransferase 134868..135575 Aggregatibacter actinomycetemcomitans D11S-1 8535868 YP_003254788.1 CDS D11S_0150 NC_013416.1 135957 136070 R identified by Glimmer3; putative; hypothetical protein complement(135957..136070) Aggregatibacter actinomycetemcomitans D11S-1 8535869 YP_003254789.1 CDS D11S_0151 NC_013416.1 136140 136274 R identified by Glimmer3; putative; hypothetical protein complement(136140..136274) Aggregatibacter actinomycetemcomitans D11S-1 8535870 YP_003254790.1 CDS D11S_0152 NC_013416.1 136553 137797 R identified by Glimmer3; putative; Low affinity tryptophan permease complement(136553..137797) Aggregatibacter actinomycetemcomitans D11S-1 8535871 YP_003254791.1 CDS D11S_0153 NC_013416.1 137959 138486 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 137959..138486 Aggregatibacter actinomycetemcomitans D11S-1 8535872 YP_003254792.1 CDS D11S_0154 NC_013416.1 138562 139335 D identified by Glimmer3; putative; HtpX protein 138562..139335 Aggregatibacter actinomycetemcomitans D11S-1 8535873 YP_003254793.1 CDS ribB NC_013416.1 140015 140659 D DHBP synthase; functions during riboflavin biosynthesis; 3,4-dihydroxy-2-butanone 4-phosphate synthase 140015..140659 Aggregatibacter actinomycetemcomitans D11S-1 8535874 YP_003254794.1 CDS D11S_0156 NC_013416.1 140746 141750 R catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase complement(140746..141750) Aggregatibacter actinomycetemcomitans D11S-1 8535875 YP_003254795.1 CDS D11S_0157 NC_013416.1 141925 143286 R identified by Glimmer3; putative; cell division protein FtsY complement(141925..143286) Aggregatibacter actinomycetemcomitans D11S-1 8535876 YP_003254796.1 CDS D11S_0158 NC_013416.1 143374 143958 D identified by Glimmer3; putative; putative methyltransferase 143374..143958 Aggregatibacter actinomycetemcomitans D11S-1 8535877 YP_003254797.1 CDS D11S_0159 NC_013416.1 144245 145210 D identified by Glimmer3; putative; PTS system mannose-specific transporter subunit IIAB 144245..145210 Aggregatibacter actinomycetemcomitans D11S-1 8535878 YP_003254798.1 CDS D11S_0160 NC_013416.1 145228 146025 D identified by Glimmer3; putative; fructose permease iic component 145228..146025 Aggregatibacter actinomycetemcomitans D11S-1 8535879 YP_003254799.1 CDS D11S_0161 NC_013416.1 146039 146875 D identified by Glimmer3; putative; mannose permease iid component 146039..146875 Aggregatibacter actinomycetemcomitans D11S-1 8535880 YP_003254800.1 CDS D11S_0162 NC_013416.1 146985 148160 D identified by Glimmer3; putative; Cof protein 146985..148160 Aggregatibacter actinomycetemcomitans D11S-1 8535881 YP_003254801.1 CDS D11S_0163 NC_013416.1 148452 149702 D identified by Glimmer3; putative; pyrimidine nucleoside transport protein 148452..149702 Aggregatibacter actinomycetemcomitans D11S-1 8535882 YP_003254802.1 CDS D11S_0164 NC_013416.1 149828 150547 D identified by Glimmer3; putative; purine nucleoside phosphorylase 149828..150547 Aggregatibacter actinomycetemcomitans D11S-1 8535883 YP_003254803.1 CDS D11S_0165 NC_013416.1 150595 150708 D identified by Glimmer3; putative; hypothetical protein 150595..150708 Aggregatibacter actinomycetemcomitans D11S-1 8535884 YP_003254804.1 CDS D11S_0166 NC_013416.1 150850 153237 D identified by Glimmer3; putative; PgaA 150850..153237 Aggregatibacter actinomycetemcomitans D11S-1 8535885 YP_003254805.1 CDS D11S_0167 NC_013416.1 153253 155169 D identified by Glimmer3; putative; biofilm PGA synthesis lipoprotein PgaB 153253..155169 Aggregatibacter actinomycetemcomitans D11S-1 8535886 YP_003254806.1 CDS D11S_0168 NC_013416.1 155178 156413 D predicted polysaccharide polymerase involved in biofilm formation; required for the synthesis of the beta-1,6-N-acetylglucosamine polysaccharide; PgaC; in Yersinia the HmsR protein is an inner membrane protein; N-glycosyltransferase 155178..156413 Aggregatibacter actinomycetemcomitans D11S-1 8535887 YP_003254807.1 CDS D11S_0169 NC_013416.1 156416 156709 D identified by Glimmer3; putative; HmsD 156416..156709 Aggregatibacter actinomycetemcomitans D11S-1 8535888 YP_003254808.1 CDS D11S_0170 NC_013416.1 156677 156799 R identified by Glimmer3; putative; hypothetical protein complement(156677..156799) Aggregatibacter actinomycetemcomitans D11S-1 8535889 YP_003254809.1 CDS D11S_0171 NC_013416.1 156827 158152 R identified by Glimmer3; putative; regulatory protein UhpC complement(156827..158152) Aggregatibacter actinomycetemcomitans D11S-1 8535890 YP_003254810.1 CDS D11S_0172 NC_013416.1 158323 158955 D catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase 158323..158955 Aggregatibacter actinomycetemcomitans D11S-1 8535891 YP_003254811.1 CDS D11S_0173 NC_013416.1 159043 159687 R identified by Glimmer3; putative; hypothetical protein complement(159043..159687) Aggregatibacter actinomycetemcomitans D11S-1 8535892 YP_003254812.1 CDS D11S_0174 NC_013416.1 159715 160197 R identified by Glimmer3; putative; hypothetical protein complement(159715..160197) Aggregatibacter actinomycetemcomitans D11S-1 8535893 YP_003254813.1 CDS D11S_0175 NC_013416.1 160200 161228 R identified by Glimmer3; putative; hypothetical protein complement(160200..161228) Aggregatibacter actinomycetemcomitans D11S-1 8535894 YP_003254814.1 CDS D11S_0176 NC_013416.1 161658 162959 R identified by Glimmer3; putative; putative ATPase complement(161658..162959) Aggregatibacter actinomycetemcomitans D11S-1 8535895 YP_003254815.1 CDS D11S_0177 NC_013416.1 163430 164761 R facilitates an early step in the assembly of the 50S subunit of the ribosome; ATP-dependent RNA helicase SrmB complement(163430..164761) Aggregatibacter actinomycetemcomitans D11S-1 8535896 YP_003254816.1 CDS D11S_0178 NC_013416.1 164748 164876 D identified by Glimmer3; putative; hypothetical protein 164748..164876 Aggregatibacter actinomycetemcomitans D11S-1 8535897 YP_003254817.1 CDS D11S_0179 NC_013416.1 164860 165558 D identified by Glimmer3; putative; phosphatidylserine synthase 164860..165558 Aggregatibacter actinomycetemcomitans D11S-1 8535898 YP_003254818.1 CDS D11S_0180 NC_013416.1 165633 166322 R identified by Glimmer3; putative; PnuC transporter complement(165633..166322) Aggregatibacter actinomycetemcomitans D11S-1 8535899 YP_003254819.1 CDS D11S_0181 NC_013416.1 166703 167362 D identified by Glimmer3; putative; ribosomal large subunit pseudouridine synthase A 166703..167362 Aggregatibacter actinomycetemcomitans D11S-1 8535900 YP_003254820.1 CDS D11S_0182 NC_013416.1 167359 167511 R identified by Glimmer3; putative; hypothetical protein complement(167359..167511) Aggregatibacter actinomycetemcomitans D11S-1 8535901 YP_003254821.1 CDS D11S_0183 NC_013416.1 167681 168187 R catalyzes the hydrolysis of S-ribosylhomocysteine to homocysteine and autoinducer-2; S-ribosylhomocysteinase complement(167681..168187) Aggregatibacter actinomycetemcomitans D11S-1 8535902 YP_003254822.1 CDS D11S_0184 NC_013416.1 168400 168885 R identified by Glimmer3; putative; glucose-inhibited division protein B complement(168400..168885) Aggregatibacter actinomycetemcomitans D11S-1 8535903 YP_003254823.1 CDS D11S_0185 NC_013416.1 168888 169493 R identified by Glimmer3; putative; galactoside O-acetyltransferase complement(168888..169493) Aggregatibacter actinomycetemcomitans D11S-1 8535904 YP_003254824.1 CDS D11S_0186 NC_013416.1 169493 169906 R identified by Glimmer3; putative; phosphatase YqaB complement(169493..169906) Aggregatibacter actinomycetemcomitans D11S-1 8535905 YP_003254825.1 CDS D11S_0187 NC_013416.1 169927 170094 R identified by Glimmer3; putative; phosphatase YqaB complement(169927..170094) Aggregatibacter actinomycetemcomitans D11S-1 8535906 YP_003254826.1 CDS D11S_0188 NC_013416.1 170223 170603 D identified by Glimmer3; putative; S-ribosylhomocysteinase 170223..170603 Aggregatibacter actinomycetemcomitans D11S-1 8535907 YP_003254827.1 CDS D11S_0192 NC_013416.1 171119 173134 R identified by Glimmer3; putative; ATP-dependent DNA helicase Rep complement(171119..173134) Aggregatibacter actinomycetemcomitans D11S-1 8535911 YP_003254828.1 CDS D11S_0193 NC_013416.1 173144 173374 R identified by Glimmer3; putative; aspartate-semialdehyde dehydrogenase complement(173144..173374) Aggregatibacter actinomycetemcomitans D11S-1 8535912 YP_003254829.1 CDS D11S_0194 NC_013416.1 173478 174041 R identified by Glimmer3; putative; outer membrane protein 18/16 complement(173478..174041) Aggregatibacter actinomycetemcomitans D11S-1 8535913 YP_003254830.1 CDS D11S_0195 NC_013416.1 174258 177059 D has 3'-5' exonuclease, 5'-3' exonuclease and 5'-3'polymerase activities, primarily functions to fill gaps during DNA replication and repair; DNA polymerase I 174258..177059 Aggregatibacter actinomycetemcomitans D11S-1 8535914 YP_003254831.1 CDS D11S_0196 NC_013416.1 177074 177196 D identified by Glimmer3; putative; dsbh domain containing protein 177074..177196 Aggregatibacter actinomycetemcomitans D11S-1 8535915 YP_003254832.1 CDS D11S_0197 NC_013416.1 177446 177793 D identified by Glimmer3; putative; ISPsy8, transposase OrfA 177446..177793 Aggregatibacter actinomycetemcomitans D11S-1 8535916 YP_003254833.1 CDS D11S_0198 NC_013416.1 177899 179713 R identified by Glimmer3; putative; NAD nucleotidase complement(177899..179713) Aggregatibacter actinomycetemcomitans D11S-1 8535917 YP_003254834.1 CDS D11S_0199 NC_013416.1 179740 180516 R identified by Glimmer3; putative; shikimate kinase complement(179740..180516) Aggregatibacter actinomycetemcomitans D11S-1 8535918 YP_003254835.1 CDS D11S_0200 NC_013416.1 180654 180773 R identified by Glimmer3; putative; hypothetical protein complement(180654..180773) Aggregatibacter actinomycetemcomitans D11S-1 8535919 YP_003254836.1 CDS D11S_0201 NC_013416.1 180795 181721 D identified by Glimmer3; putative; ADP-glyceromanno-heptose 6-epimerase 180795..181721 Aggregatibacter actinomycetemcomitans D11S-1 8535920 YP_003254837.1 CDS D11S_0202 NC_013416.1 181891 183018 D identified by Glimmer3; putative; filamentation induced by cAMP protein Fic 181891..183018 Aggregatibacter actinomycetemcomitans D11S-1 8535921 YP_003254838.1 CDS D11S_0203 NC_013416.1 183038 184081 D identified by Glimmer3; putative; lipopolysaccharide heptosyltransferase II 183038..184081 Aggregatibacter actinomycetemcomitans D11S-1 8535922 YP_003254839.1 CDS D11S_0204 NC_013416.1 184199 186094 D catalyzes the formation of glutathionylspermidine from glutathione and spermidine; also catalyzes the reverse reaction; bifunctional glutathionylspermidine amidase/glutathionylspermidine synthetase 184199..186094 Aggregatibacter actinomycetemcomitans D11S-1 8535923 YP_003254840.1 CDS D11S_0205 NC_013416.1 186180 186815 R identified by Glimmer3; putative; cytochrome c-type protein TorC complement(186180..186815) Aggregatibacter actinomycetemcomitans D11S-1 8535924 YP_003254841.1 CDS D11S_0206 NC_013416.1 186829 187278 R identified by Glimmer3; putative; periplasmiC nitrate reductase, diheme cytochrome c subunit complement(186829..187278) Aggregatibacter actinomycetemcomitans D11S-1 8535925 YP_003254842.1 CDS napH NC_013416.1 187316 188197 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; quinol dehydrogenase membrane component complement(187316..188197) Aggregatibacter actinomycetemcomitans D11S-1 8535926 YP_003254843.1 CDS napG NC_013416.1 188197 189057 R part of NapHG quinol dehydrogenase; couples electron transfer from ubiquinone-ubiquinol couple via NapC/B to NapA; secreted by twin arginine translocation pathway; quinol dehydrogenase periplasmic component complement(188197..189057) Aggregatibacter actinomycetemcomitans D11S-1 8535927 YP_003254844.1 CDS D11S_0209 NC_013416.1 189084 191570 R periplasmic; catalytic subunit; with NapBC catalyzes the reduction of nitrate to nitrite; NapAB receives electrons from NapC; nitrate reductase catalytic subunit complement(189084..191570) Aggregatibacter actinomycetemcomitans D11S-1 8535928 YP_003254845.1 CDS D11S_0210 NC_013416.1 191604 191888 R identified by Glimmer3; putative; NapD protein complement(191604..191888) Aggregatibacter actinomycetemcomitans D11S-1 8535929 YP_003254846.1 CDS D11S_0211 NC_013416.1 191955 192119 R identified by Glimmer3; putative; hypothetical protein complement(191955..192119) Aggregatibacter actinomycetemcomitans D11S-1 8535930 YP_003254847.1 CDS D11S_0212 NC_013416.1 192165 193868 D identified by Glimmer3; putative; nitrate/nitrite sensor protein NarQ 192165..193868 Aggregatibacter actinomycetemcomitans D11S-1 8535931 YP_003254848.1 CDS murB NC_013416.1 193883 194908 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 193883..194908 Aggregatibacter actinomycetemcomitans D11S-1 8535932 YP_003254849.1 CDS D11S_0214 NC_013416.1 194924 195238 D identified by Glimmer3; putative; RNA polymerase factor sigma-32 194924..195238 Aggregatibacter actinomycetemcomitans D11S-1 8535933 YP_003254850.1 CDS D11S_0215 NC_013416.1 195423 196271 D binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 195423..196271 Aggregatibacter actinomycetemcomitans D11S-1 8535934 YP_003254851.1 CDS D11S_0216 NC_013416.1 196338 196973 R identified by Glimmer3; putative; DNA transformation protein TfoX complement(196338..196973) Aggregatibacter actinomycetemcomitans D11S-1 8535935 YP_003254852.1 CDS D11S_0217 NC_013416.1 197012 197137 R identified by Glimmer3; putative; hypothetical protein complement(197012..197137) Aggregatibacter actinomycetemcomitans D11S-1 8535936 YP_003254853.1 CDS D11S_0218 NC_013416.1 198260 198709 R identified by Glimmer3; putative; translation elongation factor Tu complement(198260..198709) Aggregatibacter actinomycetemcomitans D11S-1 8535937 YP_003254854.1 CDS D11S_0219 NC_013416.1 198909 199436 R identified by Glimmer3; putative; elongation factor Tu complement(198909..199436) Aggregatibacter actinomycetemcomitans D11S-1 8535938 YP_003254855.1 CDS D11S_0220 NC_013416.1 199500 201602 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(199500..201602) Aggregatibacter actinomycetemcomitans D11S-1 8535939 YP_003254856.1 CDS D11S_0221 NC_013416.1 201717 202187 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(201717..202187) Aggregatibacter actinomycetemcomitans D11S-1 8535940 YP_003254857.2 CDS D11S_0222 NC_013416.1 202340 202714 R identified by Glimmer3; putative; 30S ribosomal protein S12 complement(202340..202714) Aggregatibacter actinomycetemcomitans D11S-1 8535941 YP_003254858.1 CDS D11S_0223 NC_013416.1 202714 202854 R identified by Glimmer3; putative; hypothetical protein complement(202714..202854) Aggregatibacter actinomycetemcomitans D11S-1 8535942 YP_003254859.1 CDS D11S_0224 NC_013416.1 202942 203241 R identified by Glimmer3; putative; ketol-acid reductoisomerase complement(202942..203241) Aggregatibacter actinomycetemcomitans D11S-1 8535943 YP_003254860.1 CDS D11S_0225 NC_013416.1 203882 204067 D identified by Glimmer3; putative; HTH-type transcriptional regulator IlvY 203882..204067 Aggregatibacter actinomycetemcomitans D11S-1 8535944 YP_003254861.1 CDS D11S_0226 NC_013416.1 204100 204981 D identified by Glimmer3; putative; shikimate 5-dehydrogenase 204100..204981 Aggregatibacter actinomycetemcomitans D11S-1 8535945 YP_003254862.1 CDS aroE NC_013416.1 204976 205776 R AroE; catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(204976..205776) Aggregatibacter actinomycetemcomitans D11S-1 8535946 YP_003254863.1 CDS D11S_0228 NC_013416.1 205780 206331 R identified by Glimmer3; putative; protein YrdC complement(205780..206331) Aggregatibacter actinomycetemcomitans D11S-1 8535947 YP_003254864.1 CDS D11S_0229 NC_013416.1 206336 206884 R identified by Glimmer3; putative; DNA topoisomerase I complement(206336..206884) Aggregatibacter actinomycetemcomitans D11S-1 8535948 YP_003254865.1 CDS D11S_0230 NC_013416.1 206887 208641 D identified by Glimmer3; putative; DNA recombination protein RmuC 206887..208641 Aggregatibacter actinomycetemcomitans D11S-1 8535949 YP_003254866.1 CDS D11S_0231 NC_013416.1 208766 209314 D identified by Glimmer3; putative; hypothetical protein 208766..209314 Aggregatibacter actinomycetemcomitans D11S-1 8535950 YP_003254867.1 CDS D11S_0232 NC_013416.1 209326 209652 D identified by Glimmer3; putative; aspartate-semialdehyde dehydrogenase 209326..209652 Aggregatibacter actinomycetemcomitans D11S-1 8535951 YP_003254868.1 CDS D11S_0233 NC_013416.1 209664 209978 R identified by Glimmer3; putative; thiosulfate sulfurtransferase GlpE complement(209664..209978) Aggregatibacter actinomycetemcomitans D11S-1 8535952 YP_003254869.1 CDS D11S_0234 NC_013416.1 210021 210896 D identified by Glimmer3; putative; GlpG protein 210021..210896 Aggregatibacter actinomycetemcomitans D11S-1 8535953 YP_003254870.1 CDS D11S_0235 NC_013416.1 210958 211713 D identified by Glimmer3; putative; putative HTH-type transcriptional regulator YihW 210958..211713 Aggregatibacter actinomycetemcomitans D11S-1 8535954 YP_003254871.1 CDS D11S_0236 NC_013416.1 212056 213648 D identified by Glimmer3; putative; heme utilization protein 212056..213648 Aggregatibacter actinomycetemcomitans D11S-1 8535955 YP_003254872.1 CDS D11S_0237 NC_013416.1 213685 214782 D identified by Glimmer3; putative; heme-utilization protein Hup 213685..214782 Aggregatibacter actinomycetemcomitans D11S-1 8535956 YP_003254873.1 CDS D11S_0238 NC_013416.1 215372 217189 R identified by Glimmer3; putative; ABC transporter ATP-binding protein complement(215372..217189) Aggregatibacter actinomycetemcomitans D11S-1 8535957 YP_003254874.1 CDS D11S_0239 NC_013416.1 217313 218971 D identified by Glimmer3; putative; hypothetical protein 217313..218971 Aggregatibacter actinomycetemcomitans D11S-1 8535958 YP_003254875.1 CDS D11S_0240 NC_013416.1 218939 219070 R identified by Glimmer3; putative; hypothetical protein complement(218939..219070) Aggregatibacter actinomycetemcomitans D11S-1 8535959 YP_003254876.1 CDS pyrH NC_013416.1 219128 219841 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 219128..219841 Aggregatibacter actinomycetemcomitans D11S-1 8535960 YP_003254877.1 CDS D11S_0242 NC_013416.1 219909 220052 D identified by Glimmer3; putative; hypothetical protein 219909..220052 Aggregatibacter actinomycetemcomitans D11S-1 8535961 YP_003254878.1 CDS D11S_0243 NC_013416.1 220066 220623 D identified by Glimmer3; putative; ribosome recycling factor 220066..220623 Aggregatibacter actinomycetemcomitans D11S-1 8535962 YP_003254879.1 CDS D11S_0244 NC_013416.1 220652 221935 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 220652..221935 Aggregatibacter actinomycetemcomitans D11S-1 8535963 YP_003254880.1 CDS D11S_0245 NC_013416.1 221957 222676 D identified by Glimmer3; putative; di-trans,poly-cis-decaprenylcistransferase 221957..222676 Aggregatibacter actinomycetemcomitans D11S-1 8535964 YP_003254881.1 CDS D11S_0246 NC_013416.1 222691 223560 D identified by Glimmer3; putative; phosphatidate cytidylyltransferase 222691..223560 Aggregatibacter actinomycetemcomitans D11S-1 8535965 YP_003254882.1 CDS D11S_0247 NC_013416.1 223569 224903 D identified by Glimmer3; putative; RIP metalloprotease RseP 223569..224903 Aggregatibacter actinomycetemcomitans D11S-1 8535966 YP_003254883.1 CDS D11S_0248 NC_013416.1 224922 227333 D identified by Glimmer3; putative; outer membrane protein assembly complex, YaeT protein 224922..227333 Aggregatibacter actinomycetemcomitans D11S-1 8535967 YP_003254884.1 CDS D11S_0249 NC_013416.1 227438 228013 D identified by Glimmer3; putative; outer membrane protein 26 227438..228013 Aggregatibacter actinomycetemcomitans D11S-1 8535968 YP_003254885.1 CDS lpxD NC_013416.1 228013 229035 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 228013..229035 Aggregatibacter actinomycetemcomitans D11S-1 8535969 YP_003254886.1 CDS D11S_0251 NC_013416.1 229172 229582 D identified by Glimmer3; putative; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 229172..229582 Aggregatibacter actinomycetemcomitans D11S-1 8535970 YP_003254887.1 CDS D11S_0252 NC_013416.1 229603 230391 D identified by Glimmer3; putative; acyl-[acyl-carrier-protein]-UDP-N- acetylglucosamine O-acyltransferase 229603..230391 Aggregatibacter actinomycetemcomitans D11S-1 8535971 YP_003254888.1 CDS lpxB NC_013416.1 230476 231660 D catalyzes the formation of lipid A disaccharide from UDP-2,3-diacylglucosamine and 2,3-diacylglucosamine-1-phosphate, lipid A disaccharide is a precursor of lipid A that anchors LPS to the OM; lipid-A-disaccharide synthase 230476..231660 Aggregatibacter actinomycetemcomitans D11S-1 8535972 YP_003254889.1 CDS D11S_0254 NC_013416.1 231653 232252 D identified by Glimmer3; putative; ribonuclease HII 231653..232252 Aggregatibacter actinomycetemcomitans D11S-1 8535973 YP_003254890.1 CDS D11S_0255 NC_013416.1 232292 233842 D identified by Glimmer3; putative; CitT protein 232292..233842 Aggregatibacter actinomycetemcomitans D11S-1 8535974 YP_003254891.1 CDS D11S_0256 NC_013416.1 233846 234160 D identified by Glimmer3; putative; CitT protein 233846..234160 Aggregatibacter actinomycetemcomitans D11S-1 8535975 YP_003254892.1 CDS D11S_0257 NC_013416.1 234171 234779 D identified by Glimmer3; putative; CDP-alcohol phosphatidyltransferase 234171..234779 Aggregatibacter actinomycetemcomitans D11S-1 8535976 YP_003254893.1 CDS D11S_0258 NC_013416.1 234790 235422 D identified by Glimmer3; putative; acyltransferase 234790..235422 Aggregatibacter actinomycetemcomitans D11S-1 8535977 YP_003254894.1 CDS D11S_0259 NC_013416.1 235422 236351 D identified by Glimmer3; putative; phosphatidate cytidylyltransferase 235422..236351 Aggregatibacter actinomycetemcomitans D11S-1 8535978 YP_003254895.1 CDS D11S_0260 NC_013416.1 236441 237022 D identified by Glimmer3; putative; molybdopterin biosynthesis mog protein 236441..237022 Aggregatibacter actinomycetemcomitans D11S-1 8535979 YP_003254897.1 CDS D11S_0267 NC_013416.1 244498 245451 D identified by Glimmer3; putative; transaldolase B 244498..245451 Aggregatibacter actinomycetemcomitans D11S-1 8535986 YP_003254898.1 CDS D11S_0268 NC_013416.1 245470 247581 D catalyzes the formation of ribose 5-phosphate and xylulose 5-phosphate from sedoheptulose 7-phosphate and glyceraldehyde 3-phosphate; can transfer ketol groups between several groups; in Escherichia coli there are two tkt genes, tktA expressed during exponential growth and the tktB during stationary phase; transketolase 245470..247581 Aggregatibacter actinomycetemcomitans D11S-1 8535987 YP_003254899.1 CDS D11S_0269 NC_013416.1 247653 248042 R identified by Glimmer3; putative; hypothetical protein complement(247653..248042) Aggregatibacter actinomycetemcomitans D11S-1 8535988 YP_003254900.1 CDS recX NC_013416.1 248119 248577 R binds RecA and inhibits RecA-mediated DNA strand exchange and ATP hydrolysis and coprotease activities; recombination regulator RecX complement(248119..248577) Aggregatibacter actinomycetemcomitans D11S-1 8535989 YP_003254901.1 CDS recA NC_013416.1 248659 249717 R catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A complement(248659..249717) Aggregatibacter actinomycetemcomitans D11S-1 8535990 YP_003254902.1 CDS D11S_0272 NC_013416.1 249865 251790 R identified by Glimmer3; putative; ABC transporter ATP-binding protein complement(249865..251790) Aggregatibacter actinomycetemcomitans D11S-1 8535991 YP_003254903.1 CDS D11S_0273 NC_013416.1 251871 252488 D identified by Glimmer3; putative; MarC family integral membrane protein 251871..252488 Aggregatibacter actinomycetemcomitans D11S-1 8535992 YP_003254904.1 CDS D11S_0274 NC_013416.1 252594 255329 D identified by Glimmer3; putative; hypothetical protein 252594..255329 Aggregatibacter actinomycetemcomitans D11S-1 8535993 YP_003254905.1 CDS D11S_0275 NC_013416.1 255326 255556 D identified by Glimmer3; putative; hypothetical protein 255326..255556 Aggregatibacter actinomycetemcomitans D11S-1 8535994 YP_003254906.1 CDS D11S_0276 NC_013416.1 256270 256461 D identified by Glimmer3; putative; integrase 256270..256461 Aggregatibacter actinomycetemcomitans D11S-1 8535995 YP_003254907.1 CDS D11S_0277 NC_013416.1 256548 256673 D identified by Glimmer3; putative; hypothetical protein 256548..256673 Aggregatibacter actinomycetemcomitans D11S-1 8535996 YP_003254908.1 CDS D11S_0278 NC_013416.1 256694 257053 D identified by Glimmer3; putative; transposase 256694..257053 Aggregatibacter actinomycetemcomitans D11S-1 8535997 YP_003254909.1 CDS D11S_0279 NC_013416.1 257619 258290 D catalyzes the formation of D-glyceraldehyde 3-phosphate and acetaldehyde from 2-deoxy-D-ribose-5-phosphate; deoxyribose-phosphate aldolase 257619..258290 Aggregatibacter actinomycetemcomitans D11S-1 8535998 YP_003254910.1 CDS D11S_0280 NC_013416.1 258318 259067 D identified by Glimmer3; putative; deoxyribose operon repressor 258318..259067 Aggregatibacter actinomycetemcomitans D11S-1 8535999 YP_003254911.1 CDS D11S_0281 NC_013416.1 259205 260296 D identified by Glimmer3; putative; transporter 259205..260296 Aggregatibacter actinomycetemcomitans D11S-1 8536000 YP_003254912.1 CDS glmU NC_013416.1 260449 261819 R forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase complement(260449..261819) Aggregatibacter actinomycetemcomitans D11S-1 8536001 YP_003254913.1 CDS anmK NC_013416.1 261905 263035 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 261905..263035 Aggregatibacter actinomycetemcomitans D11S-1 8536002 YP_003254914.1 CDS D11S_0284 NC_013416.1 263032 263946 D identified by Glimmer3; putative; N-acetylmuramic acid 6-phosphate etherase 263032..263946 Aggregatibacter actinomycetemcomitans D11S-1 8536003 YP_003254915.1 CDS D11S_0285 NC_013416.1 264058 264483 R identified by Glimmer3; putative; RelA/SpoT domain-containing protein complement(264058..264483) Aggregatibacter actinomycetemcomitans D11S-1 8536004 YP_003254916.1 CDS D11S_0286 NC_013416.1 265184 265627 R identified by Glimmer3; putative; hypothetical protein complement(265184..265627) Aggregatibacter actinomycetemcomitans D11S-1 8536005 YP_003254917.1 CDS D11S_0287 NC_013416.1 265889 267253 D identified by Glimmer3; putative; patatin 265889..267253 Aggregatibacter actinomycetemcomitans D11S-1 8536006 YP_003254918.1 CDS D11S_0288 NC_013416.1 267378 268673 D identified by Glimmer3; putative; gamma-glutamylputrescine oxidoreductase 267378..268673 Aggregatibacter actinomycetemcomitans D11S-1 8536007 YP_003254919.1 CDS D11S_0289 NC_013416.1 268799 269578 D identified by Glimmer3; putative; L-cystine-binding protein TcyA 268799..269578 Aggregatibacter actinomycetemcomitans D11S-1 8536008 YP_003254920.1 CDS D11S_0290 NC_013416.1 269562 270284 D identified by Glimmer3; putative; glutamine-binding periplasmic protein/glutamine transport system permease 269562..270284 Aggregatibacter actinomycetemcomitans D11S-1 8536009 YP_003254921.1 CDS D11S_0291 NC_013416.1 270294 271061 D identified by Glimmer3; putative; L-cystine import ATP-binding protein TcyN 270294..271061 Aggregatibacter actinomycetemcomitans D11S-1 8536010 YP_003254922.1 CDS D11S_0292 NC_013416.1 271066 271353 R identified by Glimmer3; putative; sulfur relay protein TusB/DsrH complement(271066..271353) Aggregatibacter actinomycetemcomitans D11S-1 8536011 YP_003254923.1 CDS D11S_0293 NC_013416.1 271356 271718 R identified by Glimmer3; putative; sulfur relay protein TusC/DsrF complement(271356..271718) Aggregatibacter actinomycetemcomitans D11S-1 8536012 YP_003254924.1 CDS D11S_0294 NC_013416.1 271715 272092 R in Escherichai coli the heterohexameric TusBCD complex is involved in sulfur related that results in thiouridation to U34 position in some tRNAs; sulfur transfer complex subunit TusD complement(271715..272092) Aggregatibacter actinomycetemcomitans D11S-1 8536013 YP_003254925.1 CDS D11S_0295 NC_013416.1 272096 272764 R identified by Glimmer3; putative; DNA-binding protein complement(272096..272764) Aggregatibacter actinomycetemcomitans D11S-1 8536014 YP_003254926.1 CDS D11S_0296 NC_013416.1 272844 273569 R identified by Glimmer3; putative; fkbp-type peptidyl-prolyl cis-trans isomerase fkpa complement(272844..273569) Aggregatibacter actinomycetemcomitans D11S-1 8536015 YP_003254927.1 CDS D11S_0297 NC_013416.1 273664 273879 D identified by Glimmer3; putative; hypothetical protein 273664..273879 Aggregatibacter actinomycetemcomitans D11S-1 8536016 YP_003254928.1 CDS D11S_0298 NC_013416.1 273940 274668 R identified by Glimmer3; putative; hybrid peroxiredoxin hyPrx5 complement(273940..274668) Aggregatibacter actinomycetemcomitans D11S-1 8536017 YP_003254929.1 CDS D11S_0299 NC_013416.1 274827 275726 D Activates the expression of a regulon of hydrogen peroxide-inducible genes such as katG, gor, ahpC, ahpF, oxyS, dps, fur and grxA; DNA-binding transcriptional regulator OxyR 274827..275726 Aggregatibacter actinomycetemcomitans D11S-1 8536018 YP_003254930.1 CDS D11S_0300 NC_013416.1 275738 276358 D negatively controls the expression of fabA and fabB, genes involved in the unsaturated fatty acid biosynthesis; DNA-binding transcriptional repressor FabR 275738..276358 Aggregatibacter actinomycetemcomitans D11S-1 8536019 YP_003254931.1 CDS D11S_0301 NC_013416.1 276470 278104 R identified by Glimmer3; putative; shikimate 5-dehydrogenase complement(276470..278104) Aggregatibacter actinomycetemcomitans D11S-1 8536020 YP_003254932.1 CDS D11S_0302 NC_013416.1 278121 279869 R identified by Glimmer3; putative; CydD complement(278121..279869) Aggregatibacter actinomycetemcomitans D11S-1 8536021 YP_003254933.1 CDS D11S_0303 NC_013416.1 280038 281360 R functions in anaerobic transport of C4-dicarboxylate compounds such as fumarate; similar to dcuB; anaerobic C4-dicarboxylate transporter complement(280038..281360) Aggregatibacter actinomycetemcomitans D11S-1 8536022 YP_003254934.1 CDS D11S_0304 NC_013416.1 281705 282127 D identified by Glimmer3; putative; PspE protein 281705..282127 Aggregatibacter actinomycetemcomitans D11S-1 8536023 YP_003254935.1 CDS D11S_0305 NC_013416.1 282143 282655 D molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB 282143..282655 Aggregatibacter actinomycetemcomitans D11S-1 8536024 YP_003254936.1 CDS D11S_0306 NC_013416.1 282750 283730 D identified by Glimmer3; putative; glycerol-3-phosphate dehydrogenase 282750..283730 Aggregatibacter actinomycetemcomitans D11S-1 8536025 YP_003254937.1 CDS D11S_0307 NC_013416.1 283733 284530 D identified by Glimmer3; putative; serine acetyltransferase 1 283733..284530 Aggregatibacter actinomycetemcomitans D11S-1 8536026 YP_003254938.1 CDS D11S_0308 NC_013416.1 284578 284709 R identified by Glimmer3; putative; hypothetical protein complement(284578..284709) Aggregatibacter actinomycetemcomitans D11S-1 8536027 YP_003254939.1 CDS D11S_0309 NC_013416.1 284730 285134 D identified by Glimmer3; putative; lipoprotein 284730..285134 Aggregatibacter actinomycetemcomitans D11S-1 8536028 YP_003254940.1 CDS glpX NC_013416.1 285172 286185 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(285172..286185) Aggregatibacter actinomycetemcomitans D11S-1 8536029 YP_003254941.1 CDS D11S_0311 NC_013416.1 286381 286599 D identified by Glimmer3; putative; transcriptional regulator 286381..286599 Aggregatibacter actinomycetemcomitans D11S-1 8536030 YP_003254942.1 CDS D11S_0312 NC_013416.1 286656 287099 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin 286656..287099 Aggregatibacter actinomycetemcomitans D11S-1 8536031 YP_003254943.1 CDS D11S_0313 NC_013416.1 287542 289431 D GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA 287542..289431 Aggregatibacter actinomycetemcomitans D11S-1 8536032 YP_003254944.1 CDS D11S_0314 NC_013416.1 289703 290461 R identified by Glimmer3; putative; NmrA family protein complement(289703..290461) Aggregatibacter actinomycetemcomitans D11S-1 8536033 YP_003254945.1 CDS D11S_0315 NC_013416.1 290712 291074 D identified by Glimmer3; putative; HxlR family transcriptional regulator 290712..291074 Aggregatibacter actinomycetemcomitans D11S-1 8536034 YP_003254946.1 CDS gidB NC_013416.1 291067 291750 D glucose-inhibited division protein B; SAM-dependent methyltransferase; methylates the N7 position of guanosine in position 527 of 16S rRNA; 16S rRNA methyltransferase GidB 291067..291750 Aggregatibacter actinomycetemcomitans D11S-1 8536035 YP_003254947.1 CDS D11S_0317 NC_013416.1 291862 292239 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit I associates with the membrane and may be involved with cation translocation; F0F1 ATP synthase subunit I 291862..292239 Aggregatibacter actinomycetemcomitans D11S-1 8536036 YP_003254948.1 CDS D11S_0318 NC_013416.1 292264 293052 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A 292264..293052 Aggregatibacter actinomycetemcomitans D11S-1 8536037 YP_003254949.1 CDS D11S_0319 NC_013416.1 293106 293360 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit C is part of the membrane proton channel F0; F0F1 ATP synthase subunit C 293106..293360 Aggregatibacter actinomycetemcomitans D11S-1 8536038 YP_003254950.1 CDS D11S_0320 NC_013416.1 293410 293880 D Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit B is part of the membrane proton channel.; F0F1 ATP synthase subunit B 293410..293880 Aggregatibacter actinomycetemcomitans D11S-1 8536039 YP_003254951.1 CDS D11S_0321 NC_013416.1 293894 294442 D Produces ATP from ADP in the presence of a proton gradient across the membrane; the delta subunit is part of the catalytic core of the ATP synthase complex; F0F1 ATP synthase subunit delta 293894..294442 Aggregatibacter actinomycetemcomitans D11S-1 8536040 YP_003254952.1 CDS D11S_0322 NC_013416.1 294455 295996 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 294455..295996 Aggregatibacter actinomycetemcomitans D11S-1 8536041 YP_003254953.1 CDS D11S_0323 NC_013416.1 296012 296881 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 296012..296881 Aggregatibacter actinomycetemcomitans D11S-1 8536042 YP_003254954.1 CDS D11S_0324 NC_013416.1 296898 298271 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 296898..298271 Aggregatibacter actinomycetemcomitans D11S-1 8536043 YP_003254955.1 CDS atpC NC_013416.1 298313 298741 D part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon 298313..298741 Aggregatibacter actinomycetemcomitans D11S-1 8536044 YP_003254956.1 CDS D11S_0326 NC_013416.1 298802 299848 R identified by Glimmer3; putative; spermidine/putrescine-binding periplasmic protein 2 complement(298802..299848) Aggregatibacter actinomycetemcomitans D11S-1 8536045 YP_003254957.1 CDS D11S_0327 NC_013416.1 299853 300005 D identified by Glimmer3; putative; hypothetical protein 299853..300005 Aggregatibacter actinomycetemcomitans D11S-1 8536046 YP_003254958.1 CDS D11S_0328 NC_013416.1 300154 302295 D identified by Glimmer3; putative; putative type I restriction enzyme 300154..302295 Aggregatibacter actinomycetemcomitans D11S-1 8536047 YP_003254959.1 CDS D11S_0329 NC_013416.1 302360 303142 D identified by Glimmer3; putative; putative type I restriction enzyme 302360..303142 Aggregatibacter actinomycetemcomitans D11S-1 8536048 YP_003254960.1 CDS D11S_0330 NC_013416.1 303191 304180 D identified by Glimmer3; putative; virulence protein 303191..304180 Aggregatibacter actinomycetemcomitans D11S-1 8536049 YP_003254961.1 CDS D11S_0331 NC_013416.1 304389 305342 D identified by Glimmer3; putative; restriction modification system DNA specificity subunit 304389..305342 Aggregatibacter actinomycetemcomitans D11S-1 8536050 YP_003254962.1 CDS D11S_0332 NC_013416.1 305323 305517 D identified by Glimmer3; putative; restriction endonuclease S 305323..305517 Aggregatibacter actinomycetemcomitans D11S-1 8536051 YP_003254963.1 CDS D11S_0333 NC_013416.1 305618 307222 D identified by Glimmer3; putative; hypothetical protein 305618..307222 Aggregatibacter actinomycetemcomitans D11S-1 8536052 YP_003254964.1 CDS D11S_0334 NC_013416.1 307403 308146 R identified by Glimmer3; putative; mannose-specific PTS system protein IID complement(307403..308146) Aggregatibacter actinomycetemcomitans D11S-1 8536053 YP_003254965.1 CDS D11S_0335 NC_013416.1 308255 309058 R identified by Glimmer3; putative; PTS system mannose/fructose/sorbose family IIC subunit complement(308255..309058) Aggregatibacter actinomycetemcomitans D11S-1 8536054 YP_003254966.1 CDS D11S_0336 NC_013416.1 309070 310068 R identified by Glimmer3; putative; PTS system mannose-specific EIIAB component complement(309070..310068) Aggregatibacter actinomycetemcomitans D11S-1 8536055 YP_003254967.1 CDS D11S_0337 NC_013416.1 310354 311811 D identified by Glimmer3; putative; inner membrane transport protein YieO 310354..311811 Aggregatibacter actinomycetemcomitans D11S-1 8536056 YP_003254968.1 CDS D11S_0338 NC_013416.1 311838 313010 R identified by Glimmer3; putative; AraC family transcriptional regulator complement(311838..313010) Aggregatibacter actinomycetemcomitans D11S-1 8536057 YP_003254969.1 CDS D11S_0339 NC_013416.1 312999 313121 D identified by Glimmer3; putative; hypothetical protein 312999..313121 Aggregatibacter actinomycetemcomitans D11S-1 8536058 YP_003254970.1 CDS D11S_0340 NC_013416.1 313125 314108 R identified by Glimmer3; putative; Na+/H+ antiporter NhaC complement(313125..314108) Aggregatibacter actinomycetemcomitans D11S-1 8536059 YP_003254971.1 CDS D11S_0341 NC_013416.1 314139 314468 R identified by Glimmer3; putative; Na+/H+ antiporter NhaC complement(314139..314468) Aggregatibacter actinomycetemcomitans D11S-1 8536060 YP_003254972.1 CDS D11S_0342 NC_013416.1 314521 315717 R identified by Glimmer3; putative; aminotransferase complement(314521..315717) Aggregatibacter actinomycetemcomitans D11S-1 8536061 YP_003254973.1 CDS D11S_0343 NC_013416.1 315727 316794 R identified by Glimmer3; putative; monosaccharide-transporting ATPase complement(315727..316794) Aggregatibacter actinomycetemcomitans D11S-1 8536062 YP_003254974.1 CDS D11S_0344 NC_013416.1 316798 318309 R with XylFH is part of the high affinity xylose ABC transporter; xylose transporter ATP-binding subunit complement(316798..318309) Aggregatibacter actinomycetemcomitans D11S-1 8536063 YP_003254975.1 CDS xylF NC_013416.1 318369 319367 R periplasmic substrate-binding component of the ATP-dependent xylose transport system; high affinity; D-xylose transporter subunit XylF complement(318369..319367) Aggregatibacter actinomycetemcomitans D11S-1 8536064 YP_003254976.1 CDS D11S_0346 NC_013416.1 319625 320944 D catalyzes the interconversion of D-xylose to D-xylulose; xylose isomerase 319625..320944 Aggregatibacter actinomycetemcomitans D11S-1 8536065 YP_003254977.1 CDS D11S_0347 NC_013416.1 320993 322465 D identified by Glimmer3; putative; xylulose kinase 320993..322465 Aggregatibacter actinomycetemcomitans D11S-1 8536066 YP_003254978.1 CDS D11S_0349 NC_013416.1 322656 322775 R identified by Glimmer3; putative; hypothetical protein complement(322656..322775) Aggregatibacter actinomycetemcomitans D11S-1 8536068 YP_003254979.1 CDS D11S_0350 NC_013416.1 323103 323267 D identified by Glimmer3; putative; ISPsy8, transposase OrfA 323103..323267 Aggregatibacter actinomycetemcomitans D11S-1 8536069 YP_003254980.1 CDS D11S_0351 NC_013416.1 323271 324077 D identified by Glimmer3; putative; integrase catalytic subunit 323271..324077 Aggregatibacter actinomycetemcomitans D11S-1 8536070 YP_003254981.1 CDS pssA NC_013416.1 324117 325484 R catalyzes de novo synthesis of phosphatidylserine from CDP-diacylglycerol and L-serine which leads eventually to the production of phosphatidylethanolamine; bounds to the ribosome; phosphatidylserine synthase complement(324117..325484) Aggregatibacter actinomycetemcomitans D11S-1 8536071 YP_003254982.1 CDS D11S_0353 NC_013416.1 325670 326746 D identified by Glimmer3; putative; ATP-dependent RNA helicase SrmB 325670..326746 Aggregatibacter actinomycetemcomitans D11S-1 8536072 YP_003254983.1 CDS D11S_0354 NC_013416.1 326812 327033 R identified by Glimmer3; putative; NapF protein complement(326812..327033) Aggregatibacter actinomycetemcomitans D11S-1 8536073 YP_003254984.1 CDS D11S_0355 NC_013416.1 327140 327835 D identified by Glimmer3; putative; ribonuclease T2 family 327140..327835 Aggregatibacter actinomycetemcomitans D11S-1 8536074 YP_003254985.1 CDS pgk NC_013416.1 327948 329111 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 327948..329111 Aggregatibacter actinomycetemcomitans D11S-1 8536075 YP_003254986.1 CDS D11S_0357 NC_013416.1 329176 330255 D catalyzes the formation of glycerone phosphate and glyceraldehyde 3-phosphate from fructose 1,6, bisphosphate; fructose-bisphosphate aldolase 329176..330255 Aggregatibacter actinomycetemcomitans D11S-1 8536076 YP_003254987.1 CDS D11S_0358 NC_013416.1 330268 330429 R identified by Glimmer3; putative; hypothetical protein complement(330268..330429) Aggregatibacter actinomycetemcomitans D11S-1 8536077 YP_003254988.1 CDS D11S_0359 NC_013416.1 330292 331605 D identified by Glimmer3; putative; RfaL protein 330292..331605 Aggregatibacter actinomycetemcomitans D11S-1 8536078 YP_003254989.1 CDS D11S_0360 NC_013416.1 331598 332521 D identified by Glimmer3; putative; CrcB protein 331598..332521 Aggregatibacter actinomycetemcomitans D11S-1 8536079 YP_003254990.1 CDS D11S_0361 NC_013416.1 332559 333377 R identified by Glimmer3; putative; protein cof complement(332559..333377) Aggregatibacter actinomycetemcomitans D11S-1 8536080 YP_003254991.1 CDS D11S_0362 NC_013416.1 333664 334548 D identified by Glimmer3; putative; acetolactate synthase, large subunit, biosynthetic type 333664..334548 Aggregatibacter actinomycetemcomitans D11S-1 8536081 YP_003254992.1 CDS D11S_0363 NC_013416.1 334622 335029 D identified by Glimmer3; putative; threonine dehydratase 334622..335029 Aggregatibacter actinomycetemcomitans D11S-1 8536082 YP_003254993.1 CDS D11S_0364 NC_013416.1 335080 335496 D identified by Glimmer3; putative; threonine ammonia-lyase 335080..335496 Aggregatibacter actinomycetemcomitans D11S-1 8536083 YP_003254994.1 CDS ftsX NC_013416.1 335630 336565 R putative ABC transporter, membrane protein; cell division protein FtsX complement(335630..336565) Aggregatibacter actinomycetemcomitans D11S-1 8536084 YP_003254995.1 CDS D11S_0366 NC_013416.1 336574 337224 R identified by Glimmer3; putative; cell division ATP-binding protein FtsE complement(336574..337224) Aggregatibacter actinomycetemcomitans D11S-1 8536085 YP_003254996.1 CDS D11S_0367 NC_013416.1 337516 338190 R catalyzes the dephosphorylation of 2-phosphoglycolate to form glycolate and phosphate; phosphoglycolate phosphatase complement(337516..338190) Aggregatibacter actinomycetemcomitans D11S-1 8536086 YP_003254997.1 CDS D11S_0368 NC_013416.1 338193 338867 R catalyzes the interconversion of D-ribulose 5-phosphate to xylulose 5-phosphate; ribulose-phosphate 3-epimerase complement(338193..338867) Aggregatibacter actinomycetemcomitans D11S-1 8536087 YP_003254998.1 CDS ftsB NC_013416.1 339019 339297 D forms a complex with FtsL and FtsQ; colocalizes to the septal region of the dividing cell; membrane protein; cell division protein FtsB 339019..339297 Aggregatibacter actinomycetemcomitans D11S-1 8536088 YP_003254999.1 CDS ispD NC_013416.1 339297 339992 D 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; MEP cytidylyltransferase; MCT; catalyzes the formation of 4-diphosphocytidyl-2-C-methyl-D-erythritol from CTP and 2-C-methyl-D-erythritol 4-phosphate; involved in isoprenoid and isopentenyl-PP biosynthesis; forms homodimers; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 339297..339992 Aggregatibacter actinomycetemcomitans D11S-1 8536089 YP_003255000.1 CDS D11S_0371 NC_013416.1 339989 340468 D identified by Glimmer3; putative; 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 339989..340468 Aggregatibacter actinomycetemcomitans D11S-1 8536090 YP_003255001.1 CDS truD NC_013416.1 340465 341475 D catalyzes the modification of U13 in tRNA(Glu); tRNA pseudouridine synthase D 340465..341475 Aggregatibacter actinomycetemcomitans D11S-1 8536091 YP_003255002.1 CDS surE NC_013416.1 341508 342248 D catalyzes the conversion of a phosphate monoester to an alcohol and a phosphate; stationary phase survival protein SurE 341508..342248 Aggregatibacter actinomycetemcomitans D11S-1 8536092 YP_003255003.1 CDS D11S_0374 NC_013416.1 342276 342851 D identified by Glimmer3; putative; lipoprotein B 342276..342851 Aggregatibacter actinomycetemcomitans D11S-1 8536093 YP_003255004.1 CDS D11S_0375 NC_013416.1 342866 343057 D identified by Glimmer3; putative; outer membrane antigenic lipoprotein B 342866..343057 Aggregatibacter actinomycetemcomitans D11S-1 8536094 YP_003255005.1 CDS D11S_0376 NC_013416.1 343074 344243 D identified by Glimmer3; putative; outer membrane antigenic lipoprotein B 343074..344243 Aggregatibacter actinomycetemcomitans D11S-1 8536095 YP_003255006.1 CDS D11S_0377 NC_013416.1 344488 344667 R identified by Glimmer3; putative; hypothetical protein complement(344488..344667) Aggregatibacter actinomycetemcomitans D11S-1 8536096 YP_003255007.1 CDS D11S_0378 NC_013416.1 344940 345701 R identified by Glimmer3; putative; lipopolysaccharide core biosynthesis glycosyltransferase KdtX complement(344940..345701) Aggregatibacter actinomycetemcomitans D11S-1 8536097 YP_003255008.1 CDS D11S_0379 NC_013416.1 345800 347083 D catalyzes the transfer of 2-keto-3-deoxy-D-manno-octulosonic acid to lipid A; 3-deoxy-D-manno-octulosonic-acid transferase 345800..347083 Aggregatibacter actinomycetemcomitans D11S-1 8536098 YP_003255009.1 CDS coaD NC_013416.1 347084 347578 D Catalyzes the conversion of ATP and pantetheine 4'-phosphate to diphosphate and 3'-dephospho-coA; phosphopantetheine adenylyltransferase 347084..347578 Aggregatibacter actinomycetemcomitans D11S-1 8536099 YP_003255010.1 CDS D11S_0381 NC_013416.1 347627 348352 R catalyzes the phosphorylation of 3-deoxy-D-manno-octulosonic acid at the 4-OH position; 3-deoxy-D-manno-octulosonic-acid kinase complement(347627..348352) Aggregatibacter actinomycetemcomitans D11S-1 8536100 YP_003255011.1 CDS D11S_0382 NC_013416.1 348441 349484 D identified by Glimmer3; putative; lipopolysaccharide biosynthesis protein 348441..349484 Aggregatibacter actinomycetemcomitans D11S-1 8536101 YP_003255012.1 CDS D11S_0383 NC_013416.1 349581 349922 R identified by Glimmer3; putative; alkylhydroperoxidase AhpD core complement(349581..349922) Aggregatibacter actinomycetemcomitans D11S-1 8536102 YP_003255013.1 CDS D11S_0384 NC_013416.1 350026 350943 D identified by Glimmer3; putative; MtrA 350026..350943 Aggregatibacter actinomycetemcomitans D11S-1 8536103 YP_003255014.1 CDS D11S_0385 NC_013416.1 351031 352875 D identified by Glimmer3; putative; MdlB protein 351031..352875 Aggregatibacter actinomycetemcomitans D11S-1 8536104 YP_003255015.1 CDS D11S_0386 NC_013416.1 352916 355354 R PlsB; catalyzes the formation of 1-acyl-sn-glycerol 3-phosphate by transfering the acyl moiety from acyl-CoA; glycerol-3-phosphate acyltransferase complement(352916..355354) Aggregatibacter actinomycetemcomitans D11S-1 8536105 YP_003255016.1 CDS D11S_0387 NC_013416.1 355562 356185 D Represses a number of genes involved in the response to DNA damage; LexA repressor 355562..356185 Aggregatibacter actinomycetemcomitans D11S-1 8536106 YP_003255017.1 CDS D11S_0388 NC_013416.1 356160 356285 R identified by Glimmer3; putative; hypothetical protein complement(356160..356285) Aggregatibacter actinomycetemcomitans D11S-1 8536107 YP_003255018.1 CDS rpsF NC_013416.1 356337 356714 D binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 356337..356714 Aggregatibacter actinomycetemcomitans D11S-1 8536108 YP_003255019.1 CDS D11S_0390 NC_013416.1 356701 357027 D binds single-stranded DNA at the primosome assembly site; primosomal replication protein N 356701..357027 Aggregatibacter actinomycetemcomitans D11S-1 8536109 YP_003255020.1 CDS D11S_0391 NC_013416.1 357040 357270 D identified by Glimmer3; putative; 30S ribosomal protein S18 357040..357270 Aggregatibacter actinomycetemcomitans D11S-1 8536110 YP_003255021.1 CDS D11S_0392 NC_013416.1 357286 357735 D identified by Glimmer3; putative; 50S ribosomal protein L9 357286..357735 Aggregatibacter actinomycetemcomitans D11S-1 8536111 YP_003255022.1 CDS D11S_0393 NC_013416.1 357955 359073 D identified by Glimmer3; putative; DNA-processing chain A 357955..359073 Aggregatibacter actinomycetemcomitans D11S-1 8536112 YP_003255023.1 CDS glpQ NC_013416.1 359130 360212 R hydrolyzes deacylated phospholipids to glycerol 3-phosphate and the corresponding alcohols; periplasmic; glycerophosphodiester phosphodiesterase complement(359130..360212) Aggregatibacter actinomycetemcomitans D11S-1 8536113 YP_003255024.1 CDS D11S_0395 NC_013416.1 360446 361888 R identified by Glimmer3; putative; glycerol-3-phosphate transporter complement(360446..361888) Aggregatibacter actinomycetemcomitans D11S-1 8536114 YP_003255025.1 CDS D11S_0396 NC_013416.1 361907 362077 R identified by Glimmer3; putative; hypothetical protein complement(361907..362077) Aggregatibacter actinomycetemcomitans D11S-1 8536115 YP_003255026.1 CDS D11S_0397 NC_013416.1 362221 362958 R Specifically methylates the ribose of guanosine 2251 in 23S rRNA; 23S rRNA (guanosine-2'-O-)-methyltransferase complement(362221..362958) Aggregatibacter actinomycetemcomitans D11S-1 8536116 YP_003255027.1 CDS D11S_0398 NC_013416.1 362955 365360 R identified by Glimmer3; putative; ribonuclease R complement(362955..365360) Aggregatibacter actinomycetemcomitans D11S-1 8536117 YP_003255028.1 CDS D11S_0399 NC_013416.1 365610 366665 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 365610..366665 Aggregatibacter actinomycetemcomitans D11S-1 8536118 YP_003255029.1 CDS D11S_0400 NC_013416.1 366735 367808 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 366735..367808 Aggregatibacter actinomycetemcomitans D11S-1 8536119 YP_003255030.1 CDS D11S_0401 NC_013416.1 367808 368296 D identified by Glimmer3; putative; MreD protein 367808..368296 Aggregatibacter actinomycetemcomitans D11S-1 8536120 YP_003255031.1 CDS rplS NC_013416.1 368406 368756 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(368406..368756) Aggregatibacter actinomycetemcomitans D11S-1 8536121 YP_003255032.1 CDS trmD NC_013416.1 368782 369531 R methylates guanosine-37 in various tRNAs; uses S-adenosyl-L-methionine to transfer methyl group to tRNA; tRNA (guanine-N(1)-)-methyltransferase complement(368782..369531) Aggregatibacter actinomycetemcomitans D11S-1 8536122 YP_003255033.1 CDS rimM NC_013416.1 369597 370124 R Essential for efficient processing of 16S rRNA; 16S rRNA-processing protein RimM complement(369597..370124) Aggregatibacter actinomycetemcomitans D11S-1 8536123 YP_003255034.1 CDS rpsP NC_013416.1 370150 370398 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(370150..370398) Aggregatibacter actinomycetemcomitans D11S-1 8536124 YP_003255035.1 CDS D11S_0406 NC_013416.1 370452 370580 R identified by Glimmer3; putative; hypothetical protein complement(370452..370580) Aggregatibacter actinomycetemcomitans D11S-1 8536125 YP_003255036.1 CDS D11S_0407 NC_013416.1 370584 370739 D identified by Glimmer3; putative; hypothetical protein 370584..370739 Aggregatibacter actinomycetemcomitans D11S-1 8536126 YP_003255037.1 CDS D11S_0408 NC_013416.1 370893 372179 R identified by Glimmer3; putative; Xaa-Pro aminopeptidase complement(370893..372179) Aggregatibacter actinomycetemcomitans D11S-1 8536127 YP_003255038.1 CDS D11S_0409 NC_013416.1 372209 372757 R the crystal structure of Haemophilus influenzae HI0817 showed that this protein forms dimers; function unknown; hypothetical protein complement(372209..372757) Aggregatibacter actinomycetemcomitans D11S-1 8536128 YP_003255039.1 CDS D11S_0410 NC_013416.1 372916 373242 D identified by Glimmer3; putative; hypothetical protein 372916..373242 Aggregatibacter actinomycetemcomitans D11S-1 8536129 YP_003255040.1 CDS D11S_0411 NC_013416.1 373536 374111 D identified by Glimmer3; putative; 5-formyltetrahydrofolate cyclo-ligase 373536..374111 Aggregatibacter actinomycetemcomitans D11S-1 8536130 YP_003255041.1 CDS D11S_0412 NC_013416.1 374148 374936 R identified by Glimmer3; putative; lipoprotein complement(374148..374936) Aggregatibacter actinomycetemcomitans D11S-1 8536131 YP_003255042.1 CDS rluD NC_013416.1 375043 376017 D responsible for synthesis of pseudouridine from uracil at positions 1911, 1915 and 1917 in 23S ribosomal RNA; 23S rRNA pseudouridine synthase D 375043..376017 Aggregatibacter actinomycetemcomitans D11S-1 8536132 YP_003255043.1 CDS D11S_0414 NC_013416.1 376019 376756 D identified by Glimmer3; putative; 23S rRNA pseudouridine synthase D 376019..376756 Aggregatibacter actinomycetemcomitans D11S-1 8536133 YP_003255044.1 CDS D11S_0415 NC_013416.1 376926 378899 R identified by Glimmer3; putative; excinuclease ABC subunit B complement(376926..378899) Aggregatibacter actinomycetemcomitans D11S-1 8536134 YP_003255045.1 CDS D11S_0416 NC_013416.1 378964 379623 R identified by Glimmer3; putative; hypothetical protein complement(378964..379623) Aggregatibacter actinomycetemcomitans D11S-1 8536135 YP_003255046.1 CDS D11S_0417 NC_013416.1 379740 380033 R identified by Glimmer3; putative; hypothetical protein complement(379740..380033) Aggregatibacter actinomycetemcomitans D11S-1 8536136 YP_003255047.1 CDS D11S_0418 NC_013416.1 380059 380619 R identified by Glimmer3; putative; integral membrane protein complement(380059..380619) Aggregatibacter actinomycetemcomitans D11S-1 8536137 YP_003255048.1 CDS D11S_0419 NC_013416.1 380635 381582 R responsible for the influx of magnesium ions; magnesium/nickel/cobalt transporter CorA complement(380635..381582) Aggregatibacter actinomycetemcomitans D11S-1 8536138 YP_003255049.1 CDS D11S_0420 NC_013416.1 382235 383035 R identified by Glimmer3; putative; methyltransferase domain-containing protein complement(382235..383035) Aggregatibacter actinomycetemcomitans D11S-1 8536139 YP_003255050.1 CDS D11S_0421 NC_013416.1 383089 383220 D identified by Glimmer3; putative; hypothetical protein 383089..383220 Aggregatibacter actinomycetemcomitans D11S-1 8536140 YP_003255051.1 CDS D11S_0422 NC_013416.1 383189 386287 R identified by Glimmer3; putative; acriflavine resistance protein complement(383189..386287) Aggregatibacter actinomycetemcomitans D11S-1 8536141 YP_003255052.1 CDS D11S_0423 NC_013416.1 386301 387491 R identified by Glimmer3; putative; AcrA protein complement(386301..387491) Aggregatibacter actinomycetemcomitans D11S-1 8536142 YP_003255053.1 CDS D11S_0424 NC_013416.1 387517 388083 R identified by Glimmer3; putative; AcrR protein complement(387517..388083) Aggregatibacter actinomycetemcomitans D11S-1 8536143 YP_003255054.1 CDS D11S_0425 NC_013416.1 388283 389095 R identified by Glimmer3; putative; cell division protein FtsN complement(388283..389095) Aggregatibacter actinomycetemcomitans D11S-1 8536144 YP_003255055.1 CDS D11S_0426 NC_013416.1 389205 391445 R binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA complement(389205..391445) Aggregatibacter actinomycetemcomitans D11S-1 8536145 YP_003255056.1 CDS D11S_0427 NC_013416.1 391630 392493 D identified by Glimmer3; putative; hypothetical protein 391630..392493 Aggregatibacter actinomycetemcomitans D11S-1 8536146 YP_003255057.1 CDS D11S_0428 NC_013416.1 392500 393504 R identified by Glimmer3; putative; capsular polysaccharide synthesis complement(392500..393504) Aggregatibacter actinomycetemcomitans D11S-1 8536147 YP_003255058.1 CDS D11S_0429 NC_013416.1 393513 394361 R identified by Glimmer3; putative; lipooligosaccharide biosynthesis protein lex-1 complement(393513..394361) Aggregatibacter actinomycetemcomitans D11S-1 8536148 YP_003255059.1 CDS D11S_0430 NC_013416.1 394461 394586 D identified by Glimmer3; putative; hypothetical protein 394461..394586 Aggregatibacter actinomycetemcomitans D11S-1 8536149 YP_003255060.1 CDS rpmE NC_013416.1 394618 394830 D RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 394618..394830 Aggregatibacter actinomycetemcomitans D11S-1 8536150 YP_003255061.1 CDS D11S_0432 NC_013416.1 394893 395585 D identified by Glimmer3; putative; lipooligosaccharide galactosyltransferase I 394893..395585 Aggregatibacter actinomycetemcomitans D11S-1 8536151 YP_003255062.1 CDS D11S_0433 NC_013416.1 395586 396608 D identified by Glimmer3; putative; putative heptosyltransferase II 395586..396608 Aggregatibacter actinomycetemcomitans D11S-1 8536152 YP_003255063.1 CDS D11S_0434 NC_013416.1 396618 397670 D identified by Glimmer3; putative; formamidopyrimidine-DNA glycosylase 396618..397670 Aggregatibacter actinomycetemcomitans D11S-1 8536153 YP_003255064.1 CDS D11S_0435 NC_013416.1 397673 398530 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(397673..398530) Aggregatibacter actinomycetemcomitans D11S-1 8536154 YP_003255065.1 CDS rpmG NC_013416.1 398570 398740 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(398570..398740) Aggregatibacter actinomycetemcomitans D11S-1 8536155 YP_003255066.1 CDS rpmB NC_013416.1 398752 398988 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(398752..398988) Aggregatibacter actinomycetemcomitans D11S-1 8536156 YP_003255067.1 CDS radC NC_013416.1 399197 399856 R Involved in DNA double-strand break repair and recombination. Promotes the annealing of complementary single-stranded DNA and by simulation of RAD51 recombinase; DNA repair protein RadC complement(399197..399856) Aggregatibacter actinomycetemcomitans D11S-1 8536157 YP_003255068.1 CDS D11S_0439 NC_013416.1 399907 400059 R identified by Glimmer3; putative; hypothetical protein complement(399907..400059) Aggregatibacter actinomycetemcomitans D11S-1 8536158 YP_003255069.1 CDS D11S_0440 NC_013416.1 400034 401233 D catalyzes the conjugation of cysteine to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, which is then decarboxylated to form 4'-phosphopantotheine; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 400034..401233 Aggregatibacter actinomycetemcomitans D11S-1 8536159 YP_003255070.1 CDS D11S_0441 NC_013416.1 401302 401757 D identified by Glimmer3; putative; deoxyuridine 5'-triphosphate nucleotidohydrolase 401302..401757 Aggregatibacter actinomycetemcomitans D11S-1 8536160 YP_003255071.1 CDS slmA NC_013416.1 401757 402356 D FtsZ binding protein; synthetically lethal with a defect in the Min system; this protein is the first identified nucleoid occlusion factor which works along with the Min system to properly position the FtsZ ring assembly; nucleoid occlusion protein 401757..402356 Aggregatibacter actinomycetemcomitans D11S-1 8536161 YP_003255072.1 CDS D11S_0443 NC_013416.1 402376 402594 D identified by Glimmer3; putative; hypothetical protein 402376..402594 Aggregatibacter actinomycetemcomitans D11S-1 8536162 YP_003255073.1 CDS D11S_0444 NC_013416.1 402632 403276 D complexes with cyclic AMP and binds to specific DNA sites near the promoter to regulate the transcription of several catabolite-sensitive operons; cAMP-regulatory protein 402632..403276 Aggregatibacter actinomycetemcomitans D11S-1 8536163 YP_003255074.1 CDS D11S_0445 NC_013416.1 403409 404779 R catalyzes the reduction of 2 glutathione to glutathione disulfide; maintains high levels of reduced glutathione in the cytosol; involved in redox regulation and oxidative defense; glutathione reductase complement(403409..404779) Aggregatibacter actinomycetemcomitans D11S-1 8536164 YP_003255075.1 CDS D11S_0446 NC_013416.1 404874 405719 R identified by Glimmer3; putative; OrfJ complement(404874..405719) Aggregatibacter actinomycetemcomitans D11S-1 8536165 YP_003255076.1 CDS D11S_0447 NC_013416.1 405814 408381 R identified by Glimmer3; putative; penicillin-binding protein 1A complement(405814..408381) Aggregatibacter actinomycetemcomitans D11S-1 8536166 YP_003255077.1 CDS D11S_0448 NC_013416.1 408515 409324 D identified by Glimmer3; putative; competence protein A 408515..409324 Aggregatibacter actinomycetemcomitans D11S-1 8536167 YP_003255078.1 CDS D11S_0449 NC_013416.1 409335 409853 D identified by Glimmer3; putative; ComB 409335..409853 Aggregatibacter actinomycetemcomitans D11S-1 8536168 YP_003255079.1 CDS D11S_0450 NC_013416.1 409850 410374 D identified by Glimmer3; putative; competence protein C 409850..410374 Aggregatibacter actinomycetemcomitans D11S-1 8536169 YP_003255080.1 CDS D11S_0451 NC_013416.1 410374 410766 D identified by Glimmer3; putative; ComD 410374..410766 Aggregatibacter actinomycetemcomitans D11S-1 8536170 YP_003255081.1 CDS D11S_0452 NC_013416.1 410786 412195 D identified by Glimmer3; putative; protein transport protein HofQ 410786..412195 Aggregatibacter actinomycetemcomitans D11S-1 8536171 YP_003255082.1 CDS aroK NC_013416.1 412409 412936 D catalyzes the formation of shikimate 3-phosphate from shikimate in aromatic amino acid biosynthesis; shikimate kinase 412409..412936 Aggregatibacter actinomycetemcomitans D11S-1 8536172 YP_003255083.1 CDS aroB NC_013416.1 412960 414048 D catalyzes the formation of 3-dehydroquinate from 3-deoxy-arabino-heptulonate 7-phosphate; functions in aromatic amino acid biosynthesis; 3-dehydroquinate synthase 412960..414048 Aggregatibacter actinomycetemcomitans D11S-1 8536173 YP_003255084.1 CDS D11S_0455 NC_013416.1 414051 414905 D identified by Glimmer3; putative; DNA adenine methylase 414051..414905 Aggregatibacter actinomycetemcomitans D11S-1 8536174 YP_003255085.1 CDS D11S_0456 NC_013416.1 415011 415490 R identified by Glimmer3; putative; single-stranded DNA-binding protein complement(415011..415490) Aggregatibacter actinomycetemcomitans D11S-1 8536175 YP_003255086.1 CDS uvrA NC_013416.1 415661 418492 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A 415661..418492 Aggregatibacter actinomycetemcomitans D11S-1 8536176 YP_003255087.1 CDS D11S_0458 NC_013416.1 418561 419010 R identified by Glimmer3; putative; SoxR protein complement(418561..419010) Aggregatibacter actinomycetemcomitans D11S-1 8536177 YP_003255088.1 CDS D11S_0459 NC_013416.1 419080 419391 R identified by Glimmer3; putative; hypothetical protein complement(419080..419391) Aggregatibacter actinomycetemcomitans D11S-1 8536178 YP_003255089.1 CDS D11S_0460 NC_013416.1 419483 419800 D identified by Glimmer3; putative; hypothetical protein 419483..419800 Aggregatibacter actinomycetemcomitans D11S-1 8536179 YP_003255090.1 CDS D11S_0461 NC_013416.1 419810 422572 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 419810..422572 Aggregatibacter actinomycetemcomitans D11S-1 8536180 YP_003255091.1 CDS D11S_0462 NC_013416.1 422649 423053 D identified by Glimmer3; putative; translocase 422649..423053 Aggregatibacter actinomycetemcomitans D11S-1 8536181 YP_003255092.1 CDS holA NC_013416.1 423545 424579 R required for the assembly and function of the DNAX complex which is required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(423545..424579) Aggregatibacter actinomycetemcomitans D11S-1 8536182 YP_003255093.1 CDS D11S_0464 NC_013416.1 424579 425082 R identified by Glimmer3; putative; RlpB protein complement(424579..425082) Aggregatibacter actinomycetemcomitans D11S-1 8536183 YP_003255094.1 CDS D11S_0465 NC_013416.1 425071 425199 D identified by Glimmer3; putative; hypothetical protein 425071..425199 Aggregatibacter actinomycetemcomitans D11S-1 8536184 YP_003255095.1 CDS leuS NC_013416.1 425224 427812 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(425224..427812) Aggregatibacter actinomycetemcomitans D11S-1 8536185 YP_003255096.1 CDS D11S_0467 NC_013416.1 427854 427979 R identified by Glimmer3; putative; hypothetical protein complement(427854..427979) Aggregatibacter actinomycetemcomitans D11S-1 8536186 YP_003255097.1 CDS D11S_0468 NC_013416.1 427933 428565 R identified by Glimmer3; putative; diadenosine tetraphosphatase complement(427933..428565) Aggregatibacter actinomycetemcomitans D11S-1 8536187 YP_003255098.1 CDS D11S_0469 NC_013416.1 428593 428886 R identified by Glimmer3; putative; hypothetical protein complement(428593..428886) Aggregatibacter actinomycetemcomitans D11S-1 8536188 YP_003255099.1 CDS D11S_0470 NC_013416.1 428870 429280 R identified by Glimmer3; putative; nucleotidyltransferase substrate-binding protein complement(428870..429280) Aggregatibacter actinomycetemcomitans D11S-1 8536189 YP_003255100.1 CDS apaH NC_013416.1 429368 430195 R hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase complement(429368..430195) Aggregatibacter actinomycetemcomitans D11S-1 8536190 YP_003255101.1 CDS ksgA NC_013416.1 430211 431074 R catalyzes the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases A1518 and A1519 in 16S rRNA; mutations in ksgA causes resistance to the translation initiation inhibitor kasugamycin; dimethyladenosine transferase complement(430211..431074) Aggregatibacter actinomycetemcomitans D11S-1 8536191 YP_003255102.1 CDS D11S_0473 NC_013416.1 431153 432085 R identified by Glimmer3; putative; SurA complement(431153..432085) Aggregatibacter actinomycetemcomitans D11S-1 8536192 YP_003255103.1 CDS D11S_0474 NC_013416.1 432152 432688 R regulates pyrimidine biosynthesis by binding to the mRNA of the pyr genes, also has been shown to have uracil phosphoribosyltransferase activity; bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase complement(432152..432688) Aggregatibacter actinomycetemcomitans D11S-1 8536193 YP_003255104.1 CDS D11S_0475 NC_013416.1 432827 433237 R identified by Glimmer3; putative; hypothetical protein complement(432827..433237) Aggregatibacter actinomycetemcomitans D11S-1 8536194 YP_003255105.1 CDS D11S_0476 NC_013416.1 433350 433961 D HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein 433350..433961 Aggregatibacter actinomycetemcomitans D11S-1 8536195 YP_003255106.1 CDS D11S_0477 NC_013416.1 433985 435352 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 433985..435352 Aggregatibacter actinomycetemcomitans D11S-1 8536196 YP_003255107.1 CDS D11S_0478 NC_013416.1 435468 435593 D identified by Glimmer3; putative; hypothetical protein 435468..435593 Aggregatibacter actinomycetemcomitans D11S-1 8536197 YP_003255108.1 CDS D11S_0479 NC_013416.1 435574 436323 D identified by Glimmer3; putative; short-chain dehydrogenase/reductase SDR 435574..436323 Aggregatibacter actinomycetemcomitans D11S-1 8536198 YP_003255109.1 CDS D11S_0480 NC_013416.1 436437 436844 R identified by Glimmer3; putative; MerR family transcriptional regulator complement(436437..436844) Aggregatibacter actinomycetemcomitans D11S-1 8536199 YP_003255110.1 CDS D11S_0481 NC_013416.1 436983 438107 D identified by Glimmer3; putative; alcohol dehydrogenase class III 436983..438107 Aggregatibacter actinomycetemcomitans D11S-1 8536200 YP_003255111.1 CDS D11S_0482 NC_013416.1 438122 438952 D identified by Glimmer3; putative; esterase 438122..438952 Aggregatibacter actinomycetemcomitans D11S-1 8536201 YP_003255112.1 CDS D11S_0483 NC_013416.1 439189 439422 D identified by Glimmer3; putative; hypothetical protein 439189..439422 Aggregatibacter actinomycetemcomitans D11S-1 8536202 YP_003255113.1 CDS D11S_0484 NC_013416.1 439573 440952 R identified by Glimmer3; putative; signal recognition particle protein complement(439573..440952) Aggregatibacter actinomycetemcomitans D11S-1 8536203 YP_003255114.1 CDS D11S_0485 NC_013416.1 441106 441900 D identified by Glimmer3; putative; CcmC protein 441106..441900 Aggregatibacter actinomycetemcomitans D11S-1 8536204 YP_003255115.1 CDS D11S_0486 NC_013416.1 441975 443237 D identified by Glimmer3; putative; hemolysin 441975..443237 Aggregatibacter actinomycetemcomitans D11S-1 8536205 YP_003255116.1 CDS D11S_0487 NC_013416.1 443412 443882 D identified by Glimmer3; putative; TonB-system energizer ExbB 443412..443882 Aggregatibacter actinomycetemcomitans D11S-1 8536206 YP_003255117.1 CDS D11S_0488 NC_013416.1 443886 444332 D identified by Glimmer3; putative; TonB system transport protein ExbD 443886..444332 Aggregatibacter actinomycetemcomitans D11S-1 8536207 YP_003255118.1 CDS D11S_0489 NC_013416.1 444342 445046 D identified by Glimmer3; putative; protein TonB 444342..445046 Aggregatibacter actinomycetemcomitans D11S-1 8536208 YP_003255119.1 CDS D11S_0490 NC_013416.1 446221 446358 D identified by Glimmer3; putative; hypothetical protein 446221..446358 Aggregatibacter actinomycetemcomitans D11S-1 8536209 YP_003255120.1 CDS D11S_0491 NC_013416.1 446815 446964 D identified by Glimmer3; putative; fic-1 cell filamentation-like protein 446815..446964 Aggregatibacter actinomycetemcomitans D11S-1 8536210 YP_003255121.1 CDS D11S_0492 NC_013416.1 447665 447805 D identified by Glimmer3; putative; hypothetical protein 447665..447805 Aggregatibacter actinomycetemcomitans D11S-1 8536211 YP_003255122.1 CDS D11S_0493 NC_013416.1 447940 450360 D identified by Glimmer3; putative; anaerobic dimethyl sulfoxide reductase chain A 447940..450360 Aggregatibacter actinomycetemcomitans D11S-1 8536212 YP_003255123.1 CDS D11S_0494 NC_013416.1 450371 450994 D identified by Glimmer3; putative; anaerobic dimethyl sulfoxide reductase chain B 450371..450994 Aggregatibacter actinomycetemcomitans D11S-1 8536213 YP_003255124.1 CDS D11S_0495 NC_013416.1 450996 451835 D identified by Glimmer3; putative; anaerobic dimethyl sulfoxide reductase chain C 450996..451835 Aggregatibacter actinomycetemcomitans D11S-1 8536214 YP_003255125.1 CDS D11S_0496 NC_013416.1 451883 452497 D binds to the twin-arginine signal peptides of certain proteins, including dimethylsulfoxide reductase and trimethylamine N-oxide reductase that are translocated to the cytoplasmic membrane; twin-argninine leader-binding protein DmsD 451883..452497 Aggregatibacter actinomycetemcomitans D11S-1 8536215 YP_003255126.1 CDS D11S_0497 NC_013416.1 452511 452672 D identified by Glimmer3; putative; ferredoxin 452511..452672 Aggregatibacter actinomycetemcomitans D11S-1 8536216 YP_003255127.1 CDS glyQ NC_013416.1 452864 453769 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 452864..453769 Aggregatibacter actinomycetemcomitans D11S-1 8536217 YP_003255128.1 CDS D11S_0499 NC_013416.1 453819 454079 D identified by Glimmer3; putative; glycyl-tRNA synthetase subunit beta 453819..454079 Aggregatibacter actinomycetemcomitans D11S-1 8536218 YP_003255129.1 CDS D11S_0500 NC_013416.1 454246 454422 D identified by Glimmer3; putative; DNA polymerase beta domain-containing protein region 454246..454422 Aggregatibacter actinomycetemcomitans D11S-1 8536219 YP_003255130.1 CDS D11S_0501 NC_013416.1 454627 455331 D identified by Glimmer3; putative; hypothetical protein 454627..455331 Aggregatibacter actinomycetemcomitans D11S-1 8536220 YP_003255131.1 CDS glyS NC_013416.1 455413 457494 D glycine--tRNA ligase beta chain; glyS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit beta 455413..457494 Aggregatibacter actinomycetemcomitans D11S-1 8536221 YP_003255132.1 CDS D11S_0503 NC_013416.1 457706 458728 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(457706..458728) Aggregatibacter actinomycetemcomitans D11S-1 8536222 YP_003255133.1 CDS D11S_0504 NC_013416.1 458747 459511 R identified by Glimmer3; putative; twin arginine-targeting protein translocase TatC complement(458747..459511) Aggregatibacter actinomycetemcomitans D11S-1 8536223 YP_003255134.1 CDS D11S_0505 NC_013416.1 459549 460211 R identified by Glimmer3; putative; sec-independent translocase complement(459549..460211) Aggregatibacter actinomycetemcomitans D11S-1 8536224 YP_003255135.1 CDS D11S_0506 NC_013416.1 460215 460439 R identified by Glimmer3; putative; twin argininte translocase protein A complement(460215..460439) Aggregatibacter actinomycetemcomitans D11S-1 8536225 YP_003255136.1 CDS hslO NC_013416.1 460842 461714 R becomes active under oxidative stress; four conserved cysteines bind a zinc atom when they are in the reduced state and the enzyme is inactive; oxidative stress results in oxidized cysteines, release of zinc, and binding of Hsp33 to aggregation-prone proteins; forms dimers and higher order oligomers; Hsp33-like chaperonin complement(460842..461714) Aggregatibacter actinomycetemcomitans D11S-1 8536226 YP_003255137.1 CDS D11S_0508 NC_013416.1 461782 462198 R identified by Glimmer3; putative; heat shock protein 15 complement(461782..462198) Aggregatibacter actinomycetemcomitans D11S-1 8536227 YP_003255138.1 CDS D11S_0509 NC_013416.1 462211 462870 R identified by Glimmer3; putative; HAD-superfamily hydrolase complement(462211..462870) Aggregatibacter actinomycetemcomitans D11S-1 8536228 YP_003255139.1 CDS nudE NC_013416.1 462909 463499 D ADP-sugar pyrophosphatase; catalyzes the formation of D-ribose 5-phosphate from ADP-ribose; can also act on ADP-mannose and ADP-glucose; ADP-ribose diphosphatase NudE 462909..463499 Aggregatibacter actinomycetemcomitans D11S-1 8536229 YP_003255140.1 CDS D11S_0511 NC_013416.1 463504 464385 R identified by Glimmer3; putative; histidine kinase complement(463504..464385) Aggregatibacter actinomycetemcomitans D11S-1 8536230 YP_003255141.1 CDS D11S_0512 NC_013416.1 464456 465082 R identified by Glimmer3; putative; hypothetical protein complement(464456..465082) Aggregatibacter actinomycetemcomitans D11S-1 8536231 YP_003255142.1 CDS D11S_0513 NC_013416.1 465451 467457 D identified by Glimmer3; putative; oligopeptide transporter 465451..467457 Aggregatibacter actinomycetemcomitans D11S-1 8536232 YP_003255143.1 CDS D11S_0514 NC_013416.1 467519 467947 D identified by Glimmer3; putative; hypothetical protein 467519..467947 Aggregatibacter actinomycetemcomitans D11S-1 8536233 YP_003255144.1 CDS D11S_0515 NC_013416.1 467985 468794 D identified by Glimmer3; putative; 3'(2'),5'-bisphosphate nucleotidase 467985..468794 Aggregatibacter actinomycetemcomitans D11S-1 8536234 YP_003255145.1 CDS D11S_0516 NC_013416.1 468817 470376 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 468817..470376 Aggregatibacter actinomycetemcomitans D11S-1 8536235 YP_003255146.1 CDS D11S_0517 NC_013416.1 470629 471327 D identified by Glimmer3; putative; diadenosine tetraphosphatase 470629..471327 Aggregatibacter actinomycetemcomitans D11S-1 8536236 YP_003255147.1 CDS D11S_0518 NC_013416.1 471419 471538 D identified by Glimmer3; putative; hypothetical protein 471419..471538 Aggregatibacter actinomycetemcomitans D11S-1 8536237 YP_003255148.1 CDS D11S_0519 NC_013416.1 471654 472082 D identified by Glimmer3; putative; hypothetical protein 471654..472082 Aggregatibacter actinomycetemcomitans D11S-1 8536238 YP_003255149.1 CDS D11S_0520 NC_013416.1 472197 472889 D identified by Glimmer3; putative; aspartate racemase 472197..472889 Aggregatibacter actinomycetemcomitans D11S-1 8536239 YP_003255150.1 CDS D11S_0521 NC_013416.1 472902 473156 D identified by Glimmer3; putative; glutaredoxin-like protein 472902..473156 Aggregatibacter actinomycetemcomitans D11S-1 8536240 YP_003255151.1 CDS D11S_0522 NC_013416.1 473236 473694 D identified by Glimmer3; putative; virulence-associated protein D 473236..473694 Aggregatibacter actinomycetemcomitans D11S-1 8536241 YP_003255152.1 CDS D11S_0523 NC_013416.1 474083 474229 R identified by Glimmer3; putative; hypothetical protein complement(474083..474229) Aggregatibacter actinomycetemcomitans D11S-1 8536242 YP_003255153.1 CDS D11S_0524 NC_013416.1 474250 475704 D catalyzes the formation of D-ribulose 5-phosphate from 6-phospho-D-gluconate; 6-phosphogluconate dehydrogenase 474250..475704 Aggregatibacter actinomycetemcomitans D11S-1 8536243 YP_003255154.1 CDS D11S_0525 NC_013416.1 476115 477359 R identified by Glimmer3; putative; beta-ketoacyl-ACP synthase IV complement(476115..477359) Aggregatibacter actinomycetemcomitans D11S-1 8536244 YP_003255155.1 CDS fabG NC_013416.1 477379 478107 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase complement(477379..478107) Aggregatibacter actinomycetemcomitans D11S-1 8536245 YP_003255156.1 CDS D11S_0527 NC_013416.1 478157 478600 R identified by Glimmer3; putative; thioester dehydrase family protein complement(478157..478600) Aggregatibacter actinomycetemcomitans D11S-1 8536246 YP_003255157.1 CDS D11S_0528 NC_013416.1 478593 479816 R identified by Glimmer3; putative; 3-oxoacyl-[acyl-carrier-protein] synthase complement(478593..479816) Aggregatibacter actinomycetemcomitans D11S-1 8536247 YP_003255158.1 CDS D11S_0529 NC_013416.1 479825 480394 R identified by Glimmer3; putative; lipoprotein complement(479825..480394) Aggregatibacter actinomycetemcomitans D11S-1 8536248 YP_003255159.1 CDS D11S_0530 NC_013416.1 480434 482707 R identified by Glimmer3; putative; hypothetical protein complement(480434..482707) Aggregatibacter actinomycetemcomitans D11S-1 8536249 YP_003255160.1 CDS D11S_0531 NC_013416.1 482714 483298 R identified by Glimmer3; putative; outer membrane lipoprotein carrier protein LolA complement(482714..483298) Aggregatibacter actinomycetemcomitans D11S-1 8536250 YP_003255161.1 CDS D11S_0532 NC_013416.1 483295 483741 R identified by Glimmer3; putative; thioesterase complement(483295..483741) Aggregatibacter actinomycetemcomitans D11S-1 8536251 YP_003255162.1 CDS D11S_0533 NC_013416.1 483738 484664 R identified by Glimmer3; putative; glycosyl transferase, family 2 complement(483738..484664) Aggregatibacter actinomycetemcomitans D11S-1 8536252 YP_003255163.1 CDS D11S_0534 NC_013416.1 484661 485383 R identified by Glimmer3; putative; glycosyl transferase, group 2 family protein complement(484661..485383) Aggregatibacter actinomycetemcomitans D11S-1 8536253 YP_003255164.1 CDS D11S_0535 NC_013416.1 485383 486744 R identified by Glimmer3; putative; AMP-binding enzyme family protein complement(485383..486744) Aggregatibacter actinomycetemcomitans D11S-1 8536254 YP_003255165.1 CDS D11S_0536 NC_013416.1 486741 487286 R identified by Glimmer3; putative; integral membrane protein complement(486741..487286) Aggregatibacter actinomycetemcomitans D11S-1 8536255 YP_003255166.1 CDS D11S_0537 NC_013416.1 487312 488979 R identified by Glimmer3; putative; AMP-binding enzyme complement(487312..488979) Aggregatibacter actinomycetemcomitans D11S-1 8536256 YP_003255167.1 CDS D11S_0538 NC_013416.1 488979 489230 R identified by Glimmer3; putative; acyl carrier protein complement(488979..489230) Aggregatibacter actinomycetemcomitans D11S-1 8536257 YP_003255168.1 CDS D11S_0539 NC_013416.1 489233 489496 R identified by Glimmer3; putative; acyl carrier protein complement(489233..489496) Aggregatibacter actinomycetemcomitans D11S-1 8536258 YP_003255169.1 CDS D11S_0540 NC_013416.1 489474 490262 R identified by Glimmer3; putative; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(489474..490262) Aggregatibacter actinomycetemcomitans D11S-1 8536259 YP_003255170.1 CDS D11S_0541 NC_013416.1 490247 490990 R identified by Glimmer3; putative; hypothetical protein complement(490247..490990) Aggregatibacter actinomycetemcomitans D11S-1 8536260 YP_003255171.1 CDS D11S_0542 NC_013416.1 491020 491343 R identified by Glimmer3; putative; hypothetical protein complement(491020..491343) Aggregatibacter actinomycetemcomitans D11S-1 8536261 YP_003255172.1 CDS D11S_0543 NC_013416.1 491371 491796 D identified by Glimmer3; putative; excinuclease ATPase subunit 491371..491796 Aggregatibacter actinomycetemcomitans D11S-1 8536262 YP_003255173.1 CDS D11S_0544 NC_013416.1 491897 492610 R identified by Glimmer3; putative; HAD-superfamily hydrolase complement(491897..492610) Aggregatibacter actinomycetemcomitans D11S-1 8536263 YP_003255174.1 CDS xerC NC_013416.1 492624 493514 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC complement(492624..493514) Aggregatibacter actinomycetemcomitans D11S-1 8536264 YP_003255175.1 CDS dapF NC_013416.1 493524 494348 R involved in lysine biosynthesis; DAP epimerase; produces DL-diaminopimelate from LL-diaminopimelate; diaminopimelate epimerase complement(493524..494348) Aggregatibacter actinomycetemcomitans D11S-1 8536265 YP_003255176.1 CDS D11S_0547 NC_013416.1 494427 494606 R identified by Glimmer3; putative; phosphoribosylglycinamide formyltransferase complement(494427..494606) Aggregatibacter actinomycetemcomitans D11S-1 8536266 YP_003255177.1 CDS D11S_0548 NC_013416.1 494606 495634 R identified by Glimmer3; putative; phosphoribosylformylglycinamidine cyclo-ligase complement(494606..495634) Aggregatibacter actinomycetemcomitans D11S-1 8536267 YP_003255178.1 CDS D11S_0549 NC_013416.1 495817 496317 D identified by Glimmer3; putative; lipoprotein 495817..496317 Aggregatibacter actinomycetemcomitans D11S-1 8536268 YP_003255179.1 CDS D11S_0550 NC_013416.1 496290 496409 D identified by Glimmer3; putative; hypothetical protein 496290..496409 Aggregatibacter actinomycetemcomitans D11S-1 8536269 YP_003255180.1 CDS D11S_0551 NC_013416.1 496419 498989 R identified by Glimmer3; putative; ATP-dependent chaperone ClpB complement(496419..498989) Aggregatibacter actinomycetemcomitans D11S-1 8536270 YP_003255181.1 CDS D11S_0552 NC_013416.1 499254 499835 D identified by Glimmer3; putative; competence protein comEA 499254..499835 Aggregatibacter actinomycetemcomitans D11S-1 8536271 YP_003255182.1 CDS D11S_0553 NC_013416.1 499908 501020 R catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase complement(499908..501020) Aggregatibacter actinomycetemcomitans D11S-1 8536272 YP_003255183.1 CDS D11S_0554 NC_013416.1 501204 502016 R identified by Glimmer3; putative; Cof protein complement(501204..502016) Aggregatibacter actinomycetemcomitans D11S-1 8536273 YP_003255184.1 CDS D11S_0555 NC_013416.1 502162 502848 D identified by Glimmer3; putative; protein GntX 502162..502848 Aggregatibacter actinomycetemcomitans D11S-1 8536274 YP_003255185.1 CDS D11S_0556 NC_013416.1 502965 503549 D cytoplasmic protein that may be involved in the utilization of double-stranded DNA as a carbon source; putative DNA uptake protein 502965..503549 Aggregatibacter actinomycetemcomitans D11S-1 8536275 YP_003255186.1 CDS D11S_0557 NC_013416.1 503736 503897 R identified by Glimmer3; putative; histidine biosynthesis bifunctional protein hisIE complement(503736..503897) Aggregatibacter actinomycetemcomitans D11S-1 8536276 YP_003255187.1 CDS D11S_0558 NC_013416.1 504046 505461 R identified by Glimmer3; putative; branched-chain amino acid transport system II carrier protein complement(504046..505461) Aggregatibacter actinomycetemcomitans D11S-1 8536277 YP_003255188.1 CDS pyrG NC_013416.1 505575 507209 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 505575..507209 Aggregatibacter actinomycetemcomitans D11S-1 8536278 YP_004770517.1 CDS D11S_0559a NC_013416.1 508227 508598 D ribosomal protein L14 508227..508598 Aggregatibacter actinomycetemcomitans D11S-1 11030737 YP_003255189.1 CDS rplX NC_013416.1 508609 508920 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 508609..508920 Aggregatibacter actinomycetemcomitans D11S-1 8536279 YP_003255190.1 CDS rplE NC_013416.1 508938 509477 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 508938..509477 Aggregatibacter actinomycetemcomitans D11S-1 8536280 YP_003864092.1 CDS D11S_0561a NC_013416.1 509490 509795 D 30S ribosomal protein S14 509490..509795 Aggregatibacter actinomycetemcomitans D11S-1 9715077 YP_003255191.1 CDS rpsH NC_013416.1 509832 510224 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 509832..510224 Aggregatibacter actinomycetemcomitans D11S-1 8536281 YP_003255192.1 CDS rplF NC_013416.1 510240 510773 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 510240..510773 Aggregatibacter actinomycetemcomitans D11S-1 8536282 YP_003255193.1 CDS D11S_0564 NC_013416.1 510835 511140 D identified by Glimmer3; putative; 50S ribosomal protein L18 510835..511140 Aggregatibacter actinomycetemcomitans D11S-1 8536283 YP_003255194.1 CDS rpsE NC_013416.1 511156 511656 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 511156..511656 Aggregatibacter actinomycetemcomitans D11S-1 8536284 YP_003255195.1 CDS rplO NC_013416.1 511846 512280 D late assembly protein; 50S ribosomal protein L15 511846..512280 Aggregatibacter actinomycetemcomitans D11S-1 8536285 YP_003255196.1 CDS secY NC_013416.1 512284 513609 D forms heterotrimeric complex in the membrane; in bacteria the complex consists of SecY which forms the channel pore and SecE and SecG; the SecG subunit is not essential; in bacteria translocation is driven via the SecA ATPase; preprotein translocase subunit SecY 512284..513609 Aggregatibacter actinomycetemcomitans D11S-1 8536286 YP_003255197.1 CDS rpmJ NC_013416.1 513635 513748 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 513635..513748 Aggregatibacter actinomycetemcomitans D11S-1 8536287 YP_003255198.1 CDS D11S_0569 NC_013416.1 513890 514246 D identified by Glimmer3; putative; ribosomal protein S13p/S18e 513890..514246 Aggregatibacter actinomycetemcomitans D11S-1 8536288 YP_003255199.1 CDS D11S_0570 NC_013416.1 514262 514651 D located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 514262..514651 Aggregatibacter actinomycetemcomitans D11S-1 8536289 YP_003255200.1 CDS rpsD NC_013416.1 514681 515301 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 514681..515301 Aggregatibacter actinomycetemcomitans D11S-1 8536290 YP_003255201.1 CDS D11S_0572 NC_013416.1 515330 516319 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 515330..516319 Aggregatibacter actinomycetemcomitans D11S-1 8536291 YP_003255202.1 CDS rplQ NC_013416.1 516361 516750 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 516361..516750 Aggregatibacter actinomycetemcomitans D11S-1 8536292 YP_003255203.1 CDS D11S_0574 NC_013416.1 517759 518988 R identified by Glimmer3; putative; phosphoglycerate kinase complement(517759..518988) Aggregatibacter actinomycetemcomitans D11S-1 8536293 YP_003255204.1 CDS D11S_0575 NC_013416.1 519118 519801 R identified by Glimmer3; putative; murein transglycosylase C complement(519118..519801) Aggregatibacter actinomycetemcomitans D11S-1 8536294 YP_003255205.1 CDS D11S_0576 NC_013416.1 519817 521088 R catalyzes the formation of NAD(+) from nicotinamide ribonucleotide; nicotinamide-nucleotide adenylyltransferase complement(519817..521088) Aggregatibacter actinomycetemcomitans D11S-1 8536295 YP_003255206.1 CDS D11S_0577 NC_013416.1 521408 521653 R identified by Glimmer3; putative; sulfurtransferase TusA complement(521408..521653) Aggregatibacter actinomycetemcomitans D11S-1 8536296 YP_003255207.1 CDS D11S_0578 NC_013416.1 521741 521896 D identified by Glimmer3; putative; hypothetical protein 521741..521896 Aggregatibacter actinomycetemcomitans D11S-1 8536297 YP_003255208.1 CDS D11S_0579 NC_013416.1 521890 522012 D identified by Glimmer3; putative; hypothetical protein 521890..522012 Aggregatibacter actinomycetemcomitans D11S-1 8536298 YP_003255209.1 CDS D11S_0580 NC_013416.1 522043 522258 D identified by Glimmer3; putative; hypothetical protein 522043..522258 Aggregatibacter actinomycetemcomitans D11S-1 8536299 YP_003255210.1 CDS D11S_0581 NC_013416.1 522277 523740 D identified by Glimmer3; putative; TrkG protein 522277..523740 Aggregatibacter actinomycetemcomitans D11S-1 8536300 YP_003255211.1 CDS hemG NC_013416.1 523740 524252 D catalyzes the oxidation of protoporphyrinogen IX to form protoporphyrin IX; protoporphyrinogen oxidase 523740..524252 Aggregatibacter actinomycetemcomitans D11S-1 8536301 YP_003255213.1 CDS D11S_0588 NC_013416.1 530170 530397 D identified by Glimmer3; putative; drug/metabolite exporter family transporter 530170..530397 Aggregatibacter actinomycetemcomitans D11S-1 8536307 YP_003255214.1 CDS D11S_0589 NC_013416.1 530475 530720 D identified by Glimmer3; putative; drug/metabolite exporter family transporter 530475..530720 Aggregatibacter actinomycetemcomitans D11S-1 8536308 YP_003255215.1 CDS D11S_0590 NC_013416.1 531364 531504 R identified by Glimmer3; putative; putative transcriptional regulator complement(531364..531504) Aggregatibacter actinomycetemcomitans D11S-1 8536309 YP_003255216.1 CDS D11S_0591 NC_013416.1 531854 532027 D identified by Glimmer3; putative; ISPsy8, transposase OrfA 531854..532027 Aggregatibacter actinomycetemcomitans D11S-1 8536310 YP_003255217.1 CDS D11S_0592 NC_013416.1 532315 532824 D identified by Glimmer3; putative; integrase catalytic subunit 532315..532824 Aggregatibacter actinomycetemcomitans D11S-1 8536311 YP_003255218.1 CDS D11S_0593 NC_013416.1 532920 533504 D identified by Glimmer3; putative; HAD hydrolase 532920..533504 Aggregatibacter actinomycetemcomitans D11S-1 8536312 YP_003255219.1 CDS D11S_0594 NC_013416.1 534046 534195 D identified by Glimmer3; putative; hypothetical protein 534046..534195 Aggregatibacter actinomycetemcomitans D11S-1 8536313 YP_003255220.1 CDS D11S_0595 NC_013416.1 534242 534439 D identified by Glimmer3; putative; hypothetical protein 534242..534439 Aggregatibacter actinomycetemcomitans D11S-1 8536314 YP_003255221.1 CDS D11S_0596 NC_013416.1 534411 535448 R identified by Glimmer3; putative; ADP-heptose--lipooligosaccharide heptosyltransferase III complement(534411..535448) Aggregatibacter actinomycetemcomitans D11S-1 8536315 YP_003255222.1 CDS aspA NC_013416.1 535630 537048 R catalyzes the formation of fumarate from aspartate; aspartate ammonia-lyase complement(535630..537048) Aggregatibacter actinomycetemcomitans D11S-1 8536316 YP_003255223.1 CDS fxsA NC_013416.1 537278 537760 D F exclusion of bacteriophage T7; overproduction of this protein in Escherichia coli inhibits the F plasmid-mediated exclusion of bacteriophage T7; interacts with the F plasmid-encoded PifA protein; inner membrane protein; FxsA 537278..537760 Aggregatibacter actinomycetemcomitans D11S-1 8536317 YP_003255224.1 CDS D11S_0599 NC_013416.1 537847 538137 D identified by Glimmer3; putative; chaperonin GroS 537847..538137 Aggregatibacter actinomycetemcomitans D11S-1 8536318 YP_003255225.1 CDS groEL NC_013416.1 538258 539901 D 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL 538258..539901 Aggregatibacter actinomycetemcomitans D11S-1 8536319 YP_003255226.1 CDS D11S_0601 NC_013416.1 539990 540847 R catalyzes the formation of 5,10-methenyltetrahydrofolate from 5,10-methylenetetrahydrofolate and subsequent formation of 10-formyltetrahydrofolate from 5,10-methenyltetrahydrofolate; bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase complement(539990..540847) Aggregatibacter actinomycetemcomitans D11S-1 8536320 YP_003255227.1 CDS D11S_0604 NC_013416.1 541264 542022 R identified by Glimmer3; putative; integrase catalytic subunit complement(541264..542022) Aggregatibacter actinomycetemcomitans D11S-1 8536323 YP_003255228.1 CDS D11S_0605 NC_013416.1 542064 542237 R identified by Glimmer3; putative; ISPsy8, transposase OrfA complement(542064..542237) Aggregatibacter actinomycetemcomitans D11S-1 8536324 YP_003255229.1 CDS D11S_0606 NC_013416.1 542305 542436 R identified by Glimmer3; putative; ISPsy8, transposase OrfA complement(542305..542436) Aggregatibacter actinomycetemcomitans D11S-1 8536325 YP_003255230.1 CDS D11S_0607 NC_013416.1 542509 542865 R identified by Glimmer3; putative; diacylglycerol kinase complement(542509..542865) Aggregatibacter actinomycetemcomitans D11S-1 8536326 YP_003255231.1 CDS D11S_0608 NC_013416.1 542890 545121 R identified by Glimmer3; putative; GTP pyrophosphokinase complement(542890..545121) Aggregatibacter actinomycetemcomitans D11S-1 8536327 YP_003255232.1 CDS rumA NC_013416.1 545131 546447 R in Escherichia coli this enzyme catalyzes the SAM-dependent methylation of U1939 in the 23S ribomal RNA; binds an iron-sulfur cluster [4Fe-4S]; 23S rRNA 5-methyluridine methyltransferase complement(545131..546447) Aggregatibacter actinomycetemcomitans D11S-1 8536328 YP_003255233.1 CDS D11S_0610 NC_013416.1 546449 547135 R identified by Glimmer3; putative; DNA repair protein RecO complement(546449..547135) Aggregatibacter actinomycetemcomitans D11S-1 8536329 YP_003255234.1 CDS tsf NC_013416.1 547432 548280 R EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts complement(547432..548280) Aggregatibacter actinomycetemcomitans D11S-1 8536330 YP_003255235.1 CDS rpsB NC_013416.1 548435 549157 R one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 complement(548435..549157) Aggregatibacter actinomycetemcomitans D11S-1 8536331 YP_003255236.1 CDS D11S_0613 NC_013416.1 549232 549621 R identified by Glimmer3; putative; RssA protein complement(549232..549621) Aggregatibacter actinomycetemcomitans D11S-1 8536332 YP_003255237.1 CDS D11S_0614 NC_013416.1 549740 550627 R identified by Glimmer3; putative; D-3-phosphoglycerate dehydrogenase complement(549740..550627) Aggregatibacter actinomycetemcomitans D11S-1 8536333 YP_003255238.1 CDS D11S_0615 NC_013416.1 550655 551518 R identified by Glimmer3; putative; hypothetical protein complement(550655..551518) Aggregatibacter actinomycetemcomitans D11S-1 8536334 YP_003255239.1 CDS rph NC_013416.1 551636 552352 D RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs; ribonuclease PH 551636..552352 Aggregatibacter actinomycetemcomitans D11S-1 8536335 YP_003255240.1 CDS pyrE NC_013416.1 552362 553006 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 552362..553006 Aggregatibacter actinomycetemcomitans D11S-1 8536336 YP_003255241.1 CDS djlA NC_013416.1 553088 553963 D functions as a co-chaperone with DnaK; involved in regulation of colanic acid capsule; inner membrane protein; dimerized via transmembrane domain; J-like domain is cytoplasmic and can functionally substitute for DnaJ; stimulates synthesis of colanic acid mucoid capsule through the RcsB/C signal transduction system; Dna-J like membrane chaperone protein 553088..553963 Aggregatibacter actinomycetemcomitans D11S-1 8536337 YP_003255242.1 CDS D11S_0619 NC_013416.1 553967 554971 D identified by Glimmer3; putative; tRNA-dihydrouridine synthase C 553967..554971 Aggregatibacter actinomycetemcomitans D11S-1 8536338 YP_003255243.1 CDS D11S_0620 NC_013416.1 554957 556015 R identified by Glimmer3; putative; ferric cations import ATP-binding protein FbpC complement(554957..556015) Aggregatibacter actinomycetemcomitans D11S-1 8536339 YP_003255244.1 CDS D11S_0621 NC_013416.1 556031 557551 R identified by Glimmer3; putative; iron(III)-transport system permease FbpB 2 complement(556031..557551) Aggregatibacter actinomycetemcomitans D11S-1 8536340 YP_003255245.1 CDS D11S_0622 NC_013416.1 557632 558630 R identified by Glimmer3; putative; ferric iron binding protein complement(557632..558630) Aggregatibacter actinomycetemcomitans D11S-1 8536341 YP_003255246.1 CDS D11S_0623 NC_013416.1 558849 559190 R identified by Glimmer3; putative; hypothetical protein complement(558849..559190) Aggregatibacter actinomycetemcomitans D11S-1 8536342 YP_003255247.1 CDS trmB NC_013416.1 559221 559988 R tRNA (guanine-N(7)-)-methyltransferase; catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA by transferring the methyl residue from S-adenosyl-L-methionine; tRNA (guanine-N(7)-)-methyltransferase complement(559221..559988) Aggregatibacter actinomycetemcomitans D11S-1 8536343 YP_003255248.1 CDS D11S_0625 NC_013416.1 560154 561344 D identified by Glimmer3; putative; A/G-specific adenine glycosylase 560154..561344 Aggregatibacter actinomycetemcomitans D11S-1 8536344 YP_003255249.1 CDS D11S_0626 NC_013416.1 561322 561600 D identified by Glimmer3; putative; hypothetical protein 561322..561600 Aggregatibacter actinomycetemcomitans D11S-1 8536345 YP_003255250.1 CDS mltC NC_013416.1 561603 562682 D Murein hydrolase C; membrane-bound; lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase C 561603..562682 Aggregatibacter actinomycetemcomitans D11S-1 8536346 YP_003255251.1 CDS D11S_0630 NC_013416.1 563077 563202 D identified by Glimmer3; putative; hypothetical protein 563077..563202 Aggregatibacter actinomycetemcomitans D11S-1 8536349 YP_003255252.1 CDS D11S_0631 NC_013416.1 563183 563776 R identified by Glimmer3; putative; lipoprotein complement(563183..563776) Aggregatibacter actinomycetemcomitans D11S-1 8536350 YP_003255253.1 CDS D11S_0632 NC_013416.1 563880 564191 D identified by Glimmer3; putative; BolA protein 563880..564191 Aggregatibacter actinomycetemcomitans D11S-1 8536351 YP_003255254.1 CDS D11S_0633 NC_013416.1 564220 564336 D identified by Glimmer3; putative; hypothetical protein 564220..564336 Aggregatibacter actinomycetemcomitans D11S-1 8536352 YP_003255255.1 CDS D11S_0634 NC_013416.1 564355 564522 D identified by Glimmer3; putative; hypothetical protein 564355..564522 Aggregatibacter actinomycetemcomitans D11S-1 8536353 YP_003255256.1 CDS D11S_0635 NC_013416.1 564547 565887 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit A 564547..565887 Aggregatibacter actinomycetemcomitans D11S-1 8536354 YP_003255257.1 CDS D11S_0636 NC_013416.1 565890 567125 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit B 565890..567125 Aggregatibacter actinomycetemcomitans D11S-1 8536355 YP_003255258.1 CDS D11S_0637 NC_013416.1 567118 567903 D identified by Glimmer3; putative; NADH:ubiquinone oxidoreductase subunit C 567118..567903 Aggregatibacter actinomycetemcomitans D11S-1 8536356 YP_003255259.1 CDS D11S_0638 NC_013416.1 567903 568532 D identified by Glimmer3; putative; NADH:ubiquinone oxidoreductase subunit D 567903..568532 Aggregatibacter actinomycetemcomitans D11S-1 8536357 YP_003255260.1 CDS D11S_0639 NC_013416.1 568536 569132 D identified by Glimmer3; putative; NADH:ubiquinone oxidoreductase subunit E 568536..569132 Aggregatibacter actinomycetemcomitans D11S-1 8536358 YP_003255261.1 CDS D11S_0640 NC_013416.1 569144 570379 D uses the energy from reduction of ubiquinone-1 to ubiquinol to move Na(+) ions from the cytoplasm to the periplasm; Na(+)-translocating NADH-quinone reductase subunit F 569144..570379 Aggregatibacter actinomycetemcomitans D11S-1 8536359 YP_003255262.1 CDS D11S_0641 NC_013416.1 570384 570533 D identified by Glimmer3; putative; hypothetical protein 570384..570533 Aggregatibacter actinomycetemcomitans D11S-1 8536360 YP_003255263.1 CDS D11S_0642 NC_013416.1 570530 571618 D identified by Glimmer3; putative; thiamine biosynthesis lipoprotein ApbE 570530..571618 Aggregatibacter actinomycetemcomitans D11S-1 8536361 YP_003255264.1 CDS D11S_0643 NC_013416.1 571697 571954 D identified by Glimmer3; putative; Na(+)-translocating NADH-quinone reductase subunit E 571697..571954 Aggregatibacter actinomycetemcomitans D11S-1 8536362 YP_003255265.1 CDS mnmA NC_013416.1 572214 573365 D catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA 572214..573365 Aggregatibacter actinomycetemcomitans D11S-1 8536363 YP_003255266.1 CDS D11S_0645 NC_013416.1 573818 573934 D identified by Glimmer3; putative; hypothetical protein 573818..573934 Aggregatibacter actinomycetemcomitans D11S-1 8536364 YP_003255267.1 CDS eno NC_013416.1 574003 575313 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 574003..575313 Aggregatibacter actinomycetemcomitans D11S-1 8536365 YP_003255268.1 CDS D11S_0647 NC_013416.1 575409 575828 R similar to RuvC resolvase with substantial differences; NMR structural information suggests this protein is monomeric; unknown cellular function; Holliday junction resolvase-like protein complement(575409..575828) Aggregatibacter actinomycetemcomitans D11S-1 8536366 YP_003255269.1 CDS D11S_0648 NC_013416.1 575828 576385 R identified by Glimmer3; putative; hypothetical protein complement(575828..576385) Aggregatibacter actinomycetemcomitans D11S-1 8536367 YP_003255270.1 CDS D11S_0649 NC_013416.1 576402 577136 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(576402..577136) Aggregatibacter actinomycetemcomitans D11S-1 8536368 YP_003255271.1 CDS D11S_0650 NC_013416.1 577135 577266 D identified by Glimmer3; putative; hypothetical protein 577135..577266 Aggregatibacter actinomycetemcomitans D11S-1 8536369 YP_003255272.1 CDS D11S_0651 NC_013416.1 577223 577540 R when combined with S-adenosylmethionine represses the expression of the methionine regulon and of proteins involved in S-adenosylmethionine synthesis; transcriptional repressor protein MetJ complement(577223..577540) Aggregatibacter actinomycetemcomitans D11S-1 8536370 YP_003255273.1 CDS D11S_0652 NC_013416.1 577694 578581 R identified by Glimmer3; putative; UTP-glucose-1-phosphate uridylyltransferase complement(577694..578581) Aggregatibacter actinomycetemcomitans D11S-1 8536371 YP_003255274.1 CDS D11S_0653 NC_013416.1 578657 580021 R identified by Glimmer3; putative; phosphomannomutase complement(578657..580021) Aggregatibacter actinomycetemcomitans D11S-1 8536372 YP_003255275.1 CDS D11S_0654 NC_013416.1 580053 580235 R identified by Glimmer3; putative; carbon storage regulator complement(580053..580235) Aggregatibacter actinomycetemcomitans D11S-1 8536373 YP_003255276.1 CDS alaS NC_013416.1 580358 582982 R Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase complement(580358..582982) Aggregatibacter actinomycetemcomitans D11S-1 8536374 YP_003255277.1 CDS D11S_0656 NC_013416.1 583182 583607 R identified by Glimmer3; putative; universal stress protein A complement(583182..583607) Aggregatibacter actinomycetemcomitans D11S-1 8536375 YP_003255278.1 CDS mazG NC_013416.1 583726 584583 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 583726..584583 Aggregatibacter actinomycetemcomitans D11S-1 8536376 YP_003255279.1 CDS D11S_0658 NC_013416.1 584681 585670 R identified by Glimmer3; putative; hypothetical protein complement(584681..585670) Aggregatibacter actinomycetemcomitans D11S-1 8536377 YP_003255280.1 CDS D11S_0659 NC_013416.1 585929 587668 R identified by Glimmer3; putative; nucleoid-associated protein NdpA complement(585929..587668) Aggregatibacter actinomycetemcomitans D11S-1 8536378 YP_003255281.1 CDS D11S_0660 NC_013416.1 587673 587897 R identified by Glimmer3; putative; hypothetical protein complement(587673..587897) Aggregatibacter actinomycetemcomitans D11S-1 8536379 YP_003255282.1 CDS D11S_0661 NC_013416.1 588024 589049 D identified by Glimmer3; putative; nucleoid-associated protein NdpA 588024..589049 Aggregatibacter actinomycetemcomitans D11S-1 8536380 YP_003255283.1 CDS D11S_0662 NC_013416.1 589115 589528 D identified by Glimmer3; putative; SmpA protein 589115..589528 Aggregatibacter actinomycetemcomitans D11S-1 8536381 YP_003255284.1 CDS D11S_0663 NC_013416.1 589570 590265 D identified by Glimmer3; putative; CpxR 589570..590265 Aggregatibacter actinomycetemcomitans D11S-1 8536382 YP_003255285.1 CDS cpxA NC_013416.1 590310 591698 D part of two-component CpxA/CpxR system; senses envelope stress; upregulates a number of periplasmic folding and trafficking factors; two-component sensor protein 590310..591698 Aggregatibacter actinomycetemcomitans D11S-1 8536383 YP_003255286.1 CDS D11S_0665 NC_013416.1 591754 592962 R identified by Glimmer3; putative; sodium/glutamate symporter complement(591754..592962) Aggregatibacter actinomycetemcomitans D11S-1 8536384 YP_003255287.1 CDS D11S_0666 NC_013416.1 593128 593562 R hydrolyzes D-tyrosyl-tRNA(Tyr) into D-tyrosine and free tRNA(Tyr); possible defense mechanism against a harmful effect of D-tyrosine; D-tyrosyl-tRNA(Tyr) deacylase complement(593128..593562) Aggregatibacter actinomycetemcomitans D11S-1 8536385 YP_003255288.1 CDS rbn NC_013416.1 593559 594389 R RNase BN; required for 3' maturation of certain phage T4-encoded tRNAs; forms a dimer; specific for immature tRNA substrates containing incorrect residues within the universal CCA sequence; 3' to 5' exoribonuclease; ribonuclease BN complement(593559..594389) Aggregatibacter actinomycetemcomitans D11S-1 8536386 YP_003255289.1 CDS D11S_0668 NC_013416.1 594386 594859 R identified by Glimmer3; putative; hypothetical protein complement(594386..594859) Aggregatibacter actinomycetemcomitans D11S-1 8536387 YP_003255290.1 CDS D11S_0669 NC_013416.1 594862 595530 R identified by Glimmer3; putative; uridine phosphorylase complement(594862..595530) Aggregatibacter actinomycetemcomitans D11S-1 8536388 YP_003255291.1 CDS D11S_0670 NC_013416.1 595656 597155 D identified by Glimmer3; putative; ATP-binding protein 595656..597155 Aggregatibacter actinomycetemcomitans D11S-1 8536389 YP_003255292.1 CDS D11S_0671 NC_013416.1 597494 598309 D identified by Glimmer3; putative; O-methyltransferase N-terminus family protein 597494..598309 Aggregatibacter actinomycetemcomitans D11S-1 8536390 YP_003255293.1 CDS D11S_0672 NC_013416.1 598387 599280 R identified by Glimmer3; putative; LysR protein complement(598387..599280) Aggregatibacter actinomycetemcomitans D11S-1 8536391 YP_003255294.1 CDS D11S_0673 NC_013416.1 599639 600484 D identified by Glimmer3; putative; aldo/keto reductase 599639..600484 Aggregatibacter actinomycetemcomitans D11S-1 8536392 YP_003255295.1 CDS D11S_0674 NC_013416.1 600548 601528 D identified by Glimmer3; putative; aldo/keto reductase 600548..601528 Aggregatibacter actinomycetemcomitans D11S-1 8536393 YP_003255296.1 CDS D11S_0675 NC_013416.1 601754 602809 D identified by Glimmer3; putative; carboxylesterase type B 601754..602809 Aggregatibacter actinomycetemcomitans D11S-1 8536394 YP_003255297.1 CDS D11S_0676 NC_013416.1 603077 603409 D identified by Glimmer3; putative; carboxylesterase type B 603077..603409 Aggregatibacter actinomycetemcomitans D11S-1 8536395 YP_003255298.1 CDS D11S_0677 NC_013416.1 603546 604655 D identified by Glimmer3; putative; hypothetical protein 603546..604655 Aggregatibacter actinomycetemcomitans D11S-1 8536396 YP_003255299.1 CDS D11S_0678 NC_013416.1 604794 605684 R identified by Glimmer3; putative; LysR protein complement(604794..605684) Aggregatibacter actinomycetemcomitans D11S-1 8536397 YP_003255300.1 CDS D11S_0679 NC_013416.1 605754 605873 D identified by Glimmer3; putative; hypothetical protein 605754..605873 Aggregatibacter actinomycetemcomitans D11S-1 8536398 YP_003255301.1 CDS D11S_0680 NC_013416.1 605886 606848 D identified by Glimmer3; putative; peptidase S15 605886..606848 Aggregatibacter actinomycetemcomitans D11S-1 8536399 YP_003255302.1 CDS D11S_0681 NC_013416.1 607000 608832 R Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase complement(607000..608832) Aggregatibacter actinomycetemcomitans D11S-1 8536400 YP_003255303.1 CDS D11S_0682 NC_013416.1 608887 609684 R identified by Glimmer3; putative; glucitol operon repressor complement(608887..609684) Aggregatibacter actinomycetemcomitans D11S-1 8536401 YP_003255304.1 CDS D11S_0683 NC_013416.1 609810 610082 R identified by Glimmer3; putative; DNA-binding protein HU complement(609810..610082) Aggregatibacter actinomycetemcomitans D11S-1 8536402 YP_003255305.1 CDS D11S_0684 NC_013416.1 610249 610839 R identified by Glimmer3; putative; D-fructose-6-phosphate amidotransferase complement(610249..610839) Aggregatibacter actinomycetemcomitans D11S-1 8536403 YP_003255306.1 CDS hemE NC_013416.1 610857 611921 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(610857..611921) Aggregatibacter actinomycetemcomitans D11S-1 8536404 YP_003255307.1 CDS nudC NC_013416.1 611934 612809 R can catalyze hydrolysis of broad range of dinucleotide pyrophosphates but prefers reduced form of NADH; requires divalent metal ions such as magnesium and manganese and produces two mononucleoside 5'-phosphates; NADH pyrophosphatase complement(611934..612809) Aggregatibacter actinomycetemcomitans D11S-1 8536405 YP_003255308.1 CDS D11S_0687 NC_013416.1 612858 613502 R identified by Glimmer3; putative; putative outer membrane protein complement(612858..613502) Aggregatibacter actinomycetemcomitans D11S-1 8536406 YP_003255309.1 CDS D11S_0688 NC_013416.1 613499 613621 R identified by Glimmer3; putative; hypothetical protein complement(613499..613621) Aggregatibacter actinomycetemcomitans D11S-1 8536407 YP_003255310.1 CDS D11S_0689 NC_013416.1 613760 615376 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 613760..615376 Aggregatibacter actinomycetemcomitans D11S-1 8536408 YP_003255311.1 CDS D11S_0690 NC_013416.1 615441 616988 R identified by Glimmer3; putative; exopolyphosphatase complement(615441..616988) Aggregatibacter actinomycetemcomitans D11S-1 8536409 YP_003255312.1 CDS D11S_0691 NC_013416.1 616991 620872 R identified by Glimmer3; putative; hypothetical protein complement(616991..620872) Aggregatibacter actinomycetemcomitans D11S-1 8536410 YP_003255313.1 CDS D11S_0692 NC_013416.1 620900 622759 R identified by Glimmer3; putative; outer membrane protein complement(620900..622759) Aggregatibacter actinomycetemcomitans D11S-1 8536411 YP_003255314.1 CDS D11S_0693 NC_013416.1 622826 623455 R identified by Glimmer3; putative; nitrate/nitrite response regulator protein NarP complement(622826..623455) Aggregatibacter actinomycetemcomitans D11S-1 8536412 YP_003255315.1 CDS cyaA NC_013416.1 623465 625966 R catalyzes transfer of adenylyl group of ATP from pyrophosphate to the 3'-hydroxyl group to form cyclic AMP; adenylate cyclase complement(623465..625966) Aggregatibacter actinomycetemcomitans D11S-1 8536413 YP_003255316.1 CDS hemC NC_013416.1 626122 627048 D transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase 626122..627048 Aggregatibacter actinomycetemcomitans D11S-1 8536414 YP_003255317.1 CDS D11S_0696 NC_013416.1 627061 627807 D identified by Glimmer3; putative; uroporphyrinogen-III synthase 627061..627807 Aggregatibacter actinomycetemcomitans D11S-1 8536415 YP_003255318.1 CDS D11S_0697 NC_013416.1 627836 629221 D identified by Glimmer3; putative; HemX protein 627836..629221 Aggregatibacter actinomycetemcomitans D11S-1 8536416 YP_003255319.1 CDS D11S_0698 NC_013416.1 629234 630484 D identified by Glimmer3; putative; HemY protein 629234..630484 Aggregatibacter actinomycetemcomitans D11S-1 8536417 YP_003255320.1 CDS D11S_0699 NC_013416.1 630551 631288 R identified by Glimmer3; putative; hypothetical protein complement(630551..631288) Aggregatibacter actinomycetemcomitans D11S-1 8536418 YP_003255321.1 CDS D11S_0700 NC_013416.1 631550 631831 D identified by Glimmer3; putative; hypothetical protein 631550..631831 Aggregatibacter actinomycetemcomitans D11S-1 8536419 YP_003255322.1 CDS D11S_0701 NC_013416.1 632017 632604 D Bacteria have multiple sigma factors which are active under specific conditions; the sigma factor binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 632017..632604 Aggregatibacter actinomycetemcomitans D11S-1 8536420 YP_003255323.1 CDS D11S_0702 NC_013416.1 632619 632810 D identified by Glimmer3; putative; hypothetical protein 632619..632810 Aggregatibacter actinomycetemcomitans D11S-1 8536421 YP_003255324.1 CDS greB NC_013416.1 632893 633375 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreB complement(632893..633375) Aggregatibacter actinomycetemcomitans D11S-1 8536422 YP_003255325.1 CDS D11S_0704 NC_013416.1 633586 633720 D identified by Glimmer3; putative; hypothetical protein 633586..633720 Aggregatibacter actinomycetemcomitans D11S-1 8536423 YP_003255326.1 CDS D11S_0705 NC_013416.1 634110 634709 R identified by Glimmer3; putative; phosphoglycerate mutase complement(634110..634709) Aggregatibacter actinomycetemcomitans D11S-1 8536424 YP_003255327.1 CDS D11S_0706 NC_013416.1 634721 635707 R identified by Glimmer3; putative; permease complement(634721..635707) Aggregatibacter actinomycetemcomitans D11S-1 8536425 YP_003255328.1 CDS D11S_0707 NC_013416.1 635757 635891 R identified by Glimmer3; putative; hypothetical protein complement(635757..635891) Aggregatibacter actinomycetemcomitans D11S-1 8536426 YP_003255329.1 CDS D11S_0708 NC_013416.1 635905 636189 R identified by Glimmer3; putative; permease complement(635905..636189) Aggregatibacter actinomycetemcomitans D11S-1 8536427 YP_003255330.1 CDS D11S_0709 NC_013416.1 636299 637186 D identified by Glimmer3; putative; LysR family transcriptional regulator 636299..637186 Aggregatibacter actinomycetemcomitans D11S-1 8536428 YP_003255331.1 CDS D11S_0710 NC_013416.1 637403 639718 D identified by Glimmer3; putative; protein YhgF 637403..639718 Aggregatibacter actinomycetemcomitans D11S-1 8536429 YP_003255332.1 CDS D11S_0711 NC_013416.1 639766 641223 R identified by Glimmer3; putative; XylB protein complement(639766..641223) Aggregatibacter actinomycetemcomitans D11S-1 8536430 YP_003255333.1 CDS D11S_0712 NC_013416.1 641229 642257 R identified by Glimmer3; putative; monosaccharide-transporting ATPase complement(641229..642257) Aggregatibacter actinomycetemcomitans D11S-1 8536431 YP_003255334.1 CDS D11S_0713 NC_013416.1 642273 643760 R identified by Glimmer3; putative; MglA protein complement(642273..643760) Aggregatibacter actinomycetemcomitans D11S-1 8536432 YP_003255335.1 CDS D11S_0714 NC_013416.1 643923 644675 D identified by Glimmer3; putative; monosaccharide-transporting ATPase 643923..644675 Aggregatibacter actinomycetemcomitans D11S-1 8536433 YP_003255336.1 CDS D11S_0715 NC_013416.1 644659 644862 D identified by Glimmer3; putative; monosaccharide-transporting ATPase 644659..644862 Aggregatibacter actinomycetemcomitans D11S-1 8536434 YP_003255337.1 CDS D11S_0716 NC_013416.1 644932 645426 R identified by Glimmer3; putative; elongation factor Tu complement(644932..645426) Aggregatibacter actinomycetemcomitans D11S-1 8536435 YP_003255338.1 CDS D11S_0717 NC_013416.1 645542 646114 R identified by Glimmer3; putative; elongation factor Tu complement(645542..646114) Aggregatibacter actinomycetemcomitans D11S-1 8536436 YP_003255339.1 CDS D11S_0722 NC_013416.1 646847 647761 D catalyzes the formation of (R)-4'-phosphopantothenate in coenzyme A biosynthesis; pantothenate kinase 646847..647761 Aggregatibacter actinomycetemcomitans D11S-1 8536441 YP_003255340.1 CDS gyrB NC_013416.1 647816 650236 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit B complement(647816..650236) Aggregatibacter actinomycetemcomitans D11S-1 8536442 YP_003255341.1 CDS D11S_0724 NC_013416.1 650333 652222 R identified by Glimmer3; putative; ATP-dependent DNA helicase RecQ complement(650333..652222) Aggregatibacter actinomycetemcomitans D11S-1 8536443 YP_003255342.1 CDS cyaY NC_013416.1 652219 652533 R defects in the mitochondrial frataxin protein cause Friedreich ataxis which is an autosomal recessive neurodegenerative disease; based on phylogenomic distribution this protein may have a role in iron-sulfur cluster protein assembly; frataxin-like protein complement(652219..652533) Aggregatibacter actinomycetemcomitans D11S-1 8536444 YP_003255343.1 CDS D11S_0726 NC_013416.1 652656 652775 D identified by Glimmer3; putative; hypothetical protein 652656..652775 Aggregatibacter actinomycetemcomitans D11S-1 8536445 YP_003255344.1 CDS D11S_0727 NC_013416.1 652793 654043 D identified by Glimmer3; putative; diaminopimelate decarboxylase 652793..654043 Aggregatibacter actinomycetemcomitans D11S-1 8536446 YP_003255345.1 CDS D11S_0728 NC_013416.1 654096 654701 R identified by Glimmer3; putative; inner membrane protein complement(654096..654701) Aggregatibacter actinomycetemcomitans D11S-1 8536447 YP_003255346.1 CDS D11S_0729 NC_013416.1 654900 655460 D identified by Glimmer3; putative; dna-3-methyladenine glycosylase 1 654900..655460 Aggregatibacter actinomycetemcomitans D11S-1 8536448 YP_003255347.1 CDS D11S_0730 NC_013416.1 655526 657868 D determines N-hexane tolerance and is involved in outer membrane permeability; organic solvent tolerance protein 655526..657868 Aggregatibacter actinomycetemcomitans D11S-1 8536449 YP_003255348.1 CDS D11S_0731 NC_013416.1 657865 657987 R identified by Glimmer3; putative; hypothetical protein complement(657865..657987) Aggregatibacter actinomycetemcomitans D11S-1 8536450 YP_003255349.1 CDS D11S_0732 NC_013416.1 657957 658421 R identified by Glimmer3; putative; xanthine phosphoribosyltransferase complement(657957..658421) Aggregatibacter actinomycetemcomitans D11S-1 8536451 YP_003255350.1 CDS D11S_0733 NC_013416.1 658536 659996 D identified by Glimmer3; putative; aminoacyl-histidine dipeptidase 658536..659996 Aggregatibacter actinomycetemcomitans D11S-1 8536452 YP_003255351.1 CDS D11S_0734 NC_013416.1 660076 660831 R identified by Glimmer3; putative; Short-chain dehydrogenase complement(660076..660831) Aggregatibacter actinomycetemcomitans D11S-1 8536453 YP_003255352.1 CDS D11S_0735 NC_013416.1 660925 661437 R identified by Glimmer3; putative; MobB protein complement(660925..661437) Aggregatibacter actinomycetemcomitans D11S-1 8536454 YP_003255353.1 CDS D11S_0736 NC_013416.1 661518 661955 R identified by Glimmer3; putative; RseC protein complement(661518..661955) Aggregatibacter actinomycetemcomitans D11S-1 8536455 YP_003255354.1 CDS rseB NC_013416.1 661965 662921 R periplasmic protein; interacts with the C-terminal domain of RseA and stimulates RseA binding to sigmaE via the cytoplasmic RseA N-terminal domain which then sequesters sigmaE in the membrane thereby preventing sigmaE associated with core RNAP; periplasmic negative regulator of sigmaE complement(661965..662921) Aggregatibacter actinomycetemcomitans D11S-1 8536456 YP_003255355.1 CDS D11S_0738 NC_013416.1 663004 663588 R identified by Glimmer3; putative; MclA complement(663004..663588) Aggregatibacter actinomycetemcomitans D11S-1 8536457 YP_003255356.1 CDS D11S_0739 NC_013416.1 663627 664202 R Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; this sigma factor is involved in heat shock and oxidative stress response; RNA polymerase sigma factor RpoE complement(663627..664202) Aggregatibacter actinomycetemcomitans D11S-1 8536458 YP_003255357.1 CDS D11S_0740 NC_013416.1 664335 664589 R identified by Glimmer3; putative; hypothetical protein complement(664335..664589) Aggregatibacter actinomycetemcomitans D11S-1 8536459 YP_003255358.1 CDS D11S_0741 NC_013416.1 664629 664817 R identified by Glimmer3; putative; DMT superfamily drug/metabolite transporter complement(664629..664817) Aggregatibacter actinomycetemcomitans D11S-1 8536460 YP_003255359.1 CDS D11S_0742 NC_013416.1 664902 666617 R catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase complement(664902..666617) Aggregatibacter actinomycetemcomitans D11S-1 8536461 YP_003255360.1 CDS D11S_0743 NC_013416.1 666761 668155 D catalyzes the formation of selenocysteinyl-tRNA(Sec) from seryl-tRNA(Sec) and L-selenophosphate in selenoprotein biosynthesis; selenocysteine synthase 666761..668155 Aggregatibacter actinomycetemcomitans D11S-1 8536462 YP_003255361.1 CDS D11S_0744 NC_013416.1 668152 670011 D identified by Glimmer3; putative; selenocysteine-specific translation elongation factor 668152..670011 Aggregatibacter actinomycetemcomitans D11S-1 8536463 YP_003255362.1 CDS D11S_0745 NC_013416.1 670057 670959 D identified by Glimmer3; putative; lipoprotein 670057..670959 Aggregatibacter actinomycetemcomitans D11S-1 8536464 YP_003255363.1 CDS D11S_0746 NC_013416.1 670998 671294 R identified by Glimmer3; putative; protein SapB complement(670998..671294) Aggregatibacter actinomycetemcomitans D11S-1 8536465 YP_003255364.1 CDS D11S_0747 NC_013416.1 671254 671448 R identified by Glimmer3; putative; hypothetical protein complement(671254..671448) Aggregatibacter actinomycetemcomitans D11S-1 8536466 YP_003255365.1 CDS D11S_0748 NC_013416.1 671450 671725 R identified by Glimmer3; putative; RNA pseudouridine synthase family protein complement(671450..671725) Aggregatibacter actinomycetemcomitans D11S-1 8536467 YP_003255366.1 CDS D11S_0749 NC_013416.1 672131 673633 D identified by Glimmer3; putative; sodium-dependent transporter 672131..673633 Aggregatibacter actinomycetemcomitans D11S-1 8536468 YP_003255367.1 CDS D11S_0750 NC_013416.1 674457 674573 D identified by Glimmer3; putative; hypothetical protein 674457..674573 Aggregatibacter actinomycetemcomitans D11S-1 8536469 YP_003255368.1 CDS D11S_0751 NC_013416.1 674617 674853 D identified by Glimmer3; putative; hypothetical protein 674617..674853 Aggregatibacter actinomycetemcomitans D11S-1 8536470 YP_003255369.1 CDS D11S_0753 NC_013416.1 675831 677468 R identified by Glimmer3; putative; TadG complement(675831..677468) Aggregatibacter actinomycetemcomitans D11S-1 8536472 YP_003255370.1 CDS D11S_0754 NC_013416.1 677484 677801 R identified by Glimmer3; putative; TadF complement(677484..677801) Aggregatibacter actinomycetemcomitans D11S-1 8536473 YP_003255371.1 CDS D11S_0755 NC_013416.1 678721 679482 R identified by Glimmer3; putative; TadD complement(678721..679482) Aggregatibacter actinomycetemcomitans D11S-1 8536474 YP_003255372.1 CDS D11S_0756 NC_013416.1 679472 680338 R identified by Glimmer3; putative; TadC complement(679472..680338) Aggregatibacter actinomycetemcomitans D11S-1 8536475 YP_003255373.1 CDS D11S_0757 NC_013416.1 680335 681222 R identified by Glimmer3; putative; TadB complement(680335..681222) Aggregatibacter actinomycetemcomitans D11S-1 8536476 YP_003255374.1 CDS D11S_0758 NC_013416.1 681222 682502 R identified by Glimmer3; putative; TadA complement(681222..682502) Aggregatibacter actinomycetemcomitans D11S-1 8536477 YP_003255375.1 CDS D11S_0759 NC_013416.1 682516 683640 R identified by Glimmer3; putative; TadZ complement(682516..683640) Aggregatibacter actinomycetemcomitans D11S-1 8536478 YP_003255376.1 CDS D11S_0760 NC_013416.1 683656 684159 R identified by Glimmer3; putative; RcpB complement(683656..684159) Aggregatibacter actinomycetemcomitans D11S-1 8536479 YP_003255377.1 CDS D11S_0761 NC_013416.1 684156 685418 R identified by Glimmer3; putative; RcpA complement(684156..685418) Aggregatibacter actinomycetemcomitans D11S-1 8536480 YP_003255378.1 CDS D11S_0762 NC_013416.1 685540 686364 R identified by Glimmer3; putative; RcpC complement(685540..686364) Aggregatibacter actinomycetemcomitans D11S-1 8536481 YP_003255379.1 CDS D11S_0763 NC_013416.1 686415 686843 R identified by Glimmer3; putative; TadV complement(686415..686843) Aggregatibacter actinomycetemcomitans D11S-1 8536482 YP_003255380.1 CDS D11S_0764 NC_013416.1 687184 687414 R identified by Glimmer3; putative; hypothetical protein complement(687184..687414) Aggregatibacter actinomycetemcomitans D11S-1 8536483 YP_003255381.1 CDS D11S_0765 NC_013416.1 687380 687493 D identified by Glimmer3; putative; hypothetical protein 687380..687493 Aggregatibacter actinomycetemcomitans D11S-1 8536484 YP_003255382.1 CDS D11S_0766 NC_013416.1 687981 688445 D identified by Glimmer3; putative; putative metalloprotease 687981..688445 Aggregatibacter actinomycetemcomitans D11S-1 8536485 YP_003255383.1 CDS D11S_0767 NC_013416.1 688607 689305 D identified by Glimmer3; putative; lipoprotein 688607..689305 Aggregatibacter actinomycetemcomitans D11S-1 8536486 YP_003255384.1 CDS D11S_0768 NC_013416.1 689309 691231 D identified by Glimmer3; putative; acetyltransferase 689309..691231 Aggregatibacter actinomycetemcomitans D11S-1 8536487 YP_003255385.1 CDS D11S_0769 NC_013416.1 691272 691445 D identified by Glimmer3; putative; hypothetical protein 691272..691445 Aggregatibacter actinomycetemcomitans D11S-1 8536488 YP_003255386.1 CDS D11S_0770 NC_013416.1 691510 695031 D identified by Glimmer3; putative; transcription-repair coupling factor 691510..695031 Aggregatibacter actinomycetemcomitans D11S-1 8536489 YP_003255387.1 CDS gmhA NC_013416.1 695133 695717 D catalyzes the isomerization of sedoheptulose 7-phosphate to D-glycero-D-manno-heptose 7-phosphate; phosphoheptose isomerase 695133..695717 Aggregatibacter actinomycetemcomitans D11S-1 8536490 YP_003255388.1 CDS artP NC_013416.1 695858 696592 D With ArtMQJI transports arginine across the inner membrane; arginine transporter ATP-binding subunit 695858..696592 Aggregatibacter actinomycetemcomitans D11S-1 8536491 YP_003255389.1 CDS D11S_0773 NC_013416.1 696613 697332 D identified by Glimmer3; putative; arginine-binding periplasmic protein 1 696613..697332 Aggregatibacter actinomycetemcomitans D11S-1 8536492 YP_003255390.1 CDS D11S_0774 NC_013416.1 697337 697999 D with ArtPMJI transports arginine across the inner membrane; arginine transporter permease subunit ArtQ 697337..697999 Aggregatibacter actinomycetemcomitans D11S-1 8536493 YP_003255391.1 CDS artM NC_013416.1 698002 698685 D with ArtPQJI acts to transport arginine across the inner membrane; arginine transporter permease subunit ArtM 698002..698685 Aggregatibacter actinomycetemcomitans D11S-1 8536494 YP_003255392.1 CDS D11S_0776 NC_013416.1 699227 700825 D identified by Glimmer3; putative; transaldolase B 699227..700825 Aggregatibacter actinomycetemcomitans D11S-1 8536495 YP_003255393.1 CDS D11S_0777 NC_013416.1 701089 701547 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 701089..701547 Aggregatibacter actinomycetemcomitans D11S-1 8536496 YP_003255394.1 CDS mraW NC_013416.1 701657 702625 D identified by Glimmer3; putative; S-adenosyl-methyltransferase MraW 701657..702625 Aggregatibacter actinomycetemcomitans D11S-1 8536497 YP_003255395.1 CDS D11S_0779 NC_013416.1 702625 702942 D identified by Glimmer3; putative; cell division protein FtsL 702625..702942 Aggregatibacter actinomycetemcomitans D11S-1 8536498 YP_003255396.1 CDS D11S_0780 NC_013416.1 702960 704783 D identified by Glimmer3; putative; peptidoglycan synthetase FtsI 702960..704783 Aggregatibacter actinomycetemcomitans D11S-1 8536499 YP_003255397.1 CDS murE NC_013416.1 704801 706267 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 704801..706267 Aggregatibacter actinomycetemcomitans D11S-1 8536500 YP_003255398.1 CDS D11S_0782 NC_013416.1 706274 707653 D identified by Glimmer3; putative; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase 706274..707653 Aggregatibacter actinomycetemcomitans D11S-1 8536501 YP_003255399.1 CDS mraY NC_013416.1 707647 708732 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 707647..708732 Aggregatibacter actinomycetemcomitans D11S-1 8536502 YP_003255400.1 CDS murD NC_013416.1 708759 710063 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 708759..710063 Aggregatibacter actinomycetemcomitans D11S-1 8536503 YP_003255401.1 CDS D11S_0785 NC_013416.1 710078 711268 D identified by Glimmer3; putative; cell division protein FtsW 710078..711268 Aggregatibacter actinomycetemcomitans D11S-1 8536504 YP_003255402.1 CDS murG NC_013416.1 711309 712373 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 711309..712373 Aggregatibacter actinomycetemcomitans D11S-1 8536505 YP_003255403.1 CDS murC NC_013416.1 712444 713874 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 712444..713874 Aggregatibacter actinomycetemcomitans D11S-1 8536506 YP_003255404.1 CDS ddl NC_013416.1 713887 714816 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 713887..714816 Aggregatibacter actinomycetemcomitans D11S-1 8536507 YP_003255405.1 CDS D11S_0789 NC_013416.1 714813 715580 D identified by Glimmer3; putative; cell division protein FtsQ 714813..715580 Aggregatibacter actinomycetemcomitans D11S-1 8536508 YP_003255406.1 CDS D11S_0790 NC_013416.1 715605 716885 D identified by Glimmer3; putative; cell division protein FtsA 715605..716885 Aggregatibacter actinomycetemcomitans D11S-1 8536509 YP_003255407.1 CDS D11S_0791 NC_013416.1 716969 718252 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 716969..718252 Aggregatibacter actinomycetemcomitans D11S-1 8536510 YP_003255408.1 CDS lpxC NC_013416.1 718290 719207 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 718290..719207 Aggregatibacter actinomycetemcomitans D11S-1 8536511 YP_003255409.1 CDS D11S_0793 NC_013416.1 719405 720139 D identified by Glimmer3; putative; P-protein 719405..720139 Aggregatibacter actinomycetemcomitans D11S-1 8536512 YP_003255410.1 CDS D11S_0794 NC_013416.1 720114 720566 D identified by Glimmer3; putative; P-protein 720114..720566 Aggregatibacter actinomycetemcomitans D11S-1 8536513 YP_003255411.1 CDS D11S_0795 NC_013416.1 720700 722580 D molecular chaperone; heat shock protein 90 720700..722580 Aggregatibacter actinomycetemcomitans D11S-1 8536514 YP_003255412.1 CDS D11S_0796 NC_013416.1 722646 722990 D identified by Glimmer3; putative; succinyl-diaminopimelate desuccinylase 722646..722990 Aggregatibacter actinomycetemcomitans D11S-1 8536515 YP_003255413.1 CDS D11S_0797 NC_013416.1 723127 724260 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 723127..724260 Aggregatibacter actinomycetemcomitans D11S-1 8536516 YP_003255414.1 CDS D11S_0798 NC_013416.1 724262 724942 D identified by Glimmer3; putative; bifunctional aspartokinase I/homoserine dehydrogenase I 724262..724942 Aggregatibacter actinomycetemcomitans D11S-1 8536517 YP_003255415.1 CDS D11S_0799 NC_013416.1 725188 725811 D identified by Glimmer3; putative; adp-ribose pyrophosphatase 725188..725811 Aggregatibacter actinomycetemcomitans D11S-1 8536518 YP_003255416.1 CDS D11S_0800 NC_013416.1 725862 726686 D identified by Glimmer3; putative; cyclic 3',5'-adenosine monophosphate phosphodiesterase 725862..726686 Aggregatibacter actinomycetemcomitans D11S-1 8536519 YP_003255417.1 CDS D11S_0801 NC_013416.1 726783 726962 D identified by Glimmer3; putative; hypothetical protein 726783..726962 Aggregatibacter actinomycetemcomitans D11S-1 8536520 YP_003255418.1 CDS D11S_0802 NC_013416.1 727194 728018 R identified by Glimmer3; putative; hypothetical protein complement(727194..728018) Aggregatibacter actinomycetemcomitans D11S-1 8536521 YP_003255419.1 CDS D11S_0803 NC_013416.1 727991 728455 R identified by Glimmer3; putative; hypothetical protein complement(727991..728455) Aggregatibacter actinomycetemcomitans D11S-1 8536522 YP_003255420.1 CDS D11S_0804 NC_013416.1 728639 728776 D identified by Glimmer3; putative; hypothetical protein 728639..728776 Aggregatibacter actinomycetemcomitans D11S-1 8536523 YP_003255421.1 CDS D11S_0805 NC_013416.1 728810 729514 D identified by Glimmer3; putative; ExsB protein 728810..729514 Aggregatibacter actinomycetemcomitans D11S-1 8536524 YP_003255422.1 CDS D11S_0806 NC_013416.1 729632 730846 D identified by Glimmer3; putative; putative AAA+ superfamily ATPase 729632..730846 Aggregatibacter actinomycetemcomitans D11S-1 8536525 YP_003255423.1 CDS D11S_0807 NC_013416.1 730925 731953 R identified by Glimmer3; putative; alcohol dehydrogenase (adh-ht) protein complement(730925..731953) Aggregatibacter actinomycetemcomitans D11S-1 8536526 YP_003255424.1 CDS rlmL NC_013416.1 732224 734371 D catalyzes the N2-methyl guanosine modification of the G2445 residue of 23S rRNA; 23S rRNA m(2)G2445 methyltransferase 732224..734371 Aggregatibacter actinomycetemcomitans D11S-1 8536527 YP_003255425.1 CDS D11S_0809 NC_013416.1 734468 734812 R in conjunction with FrdC acts to anchor the catalytic components of the fumarate reductase to the cytoplasmic membrane; fumarate reductase subunit D complement(734468..734812) Aggregatibacter actinomycetemcomitans D11S-1 8536528 YP_003255426.1 CDS D11S_0810 NC_013416.1 734822 735214 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase subunit C complement(734822..735214) Aggregatibacter actinomycetemcomitans D11S-1 8536529 YP_003255427.1 CDS D11S_0811 NC_013416.1 735226 735996 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase iron-sulfur subunit complement(735226..735996) Aggregatibacter actinomycetemcomitans D11S-1 8536530 YP_003255428.1 CDS D11S_0812 NC_013416.1 736001 737809 R part of four member fumarate reductase enzyme complex FrdABCD which catalyzes the reduction of fumarate to succinate during anaerobic respiration; FrdAB are the catalytic subcomplex consisting of a flavoprotein subunit and an iron-sulfur subunit, respectively; FrdCD are the membrane components which interact with quinone and are involved in electron transfer; the catalytic subunits are similar to succinate dehydrogenase SdhAB; fumarate reductase flavoprotein subunit complement(736001..737809) Aggregatibacter actinomycetemcomitans D11S-1 8536531 YP_003255429.1 CDS D11S_0813 NC_013416.1 737865 738053 R identified by Glimmer3; putative; hypothetical protein complement(737865..738053) Aggregatibacter actinomycetemcomitans D11S-1 8536532 YP_003255430.1 CDS D11S_0814 NC_013416.1 738117 739088 D lysine--tRNA ligase beta chain; poxA; class II aminoacyl tRNA synthetase; catalyzes a two-step reaction; first charging a lysine molecule by linking the carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; lysyl-tRNA synthetase 738117..739088 Aggregatibacter actinomycetemcomitans D11S-1 8536533 YP_003255431.1 CDS fecE NC_013416.1 739154 739921 R Part of the FecBCDE citrate-dependent iron (III) transport system; iron-dicitrate transporter ATP-binding subunit complement(739154..739921) Aggregatibacter actinomycetemcomitans D11S-1 8536534 YP_003255432.1 CDS fecD NC_013416.1 739921 740904 R Ferric citrate binds FecA and is transported across the outer membrane while transmits a signal across the cytoplasmic membrane protein FecR. FecR transmits a signal across the membrane and activates the cytoplasmic FecI that directs the RNA polymerase to express the fecABCDE operon (which encodes the ferric citrate outer membrane receptor and the ferric citrate ABC transporter), as well as fecIR. FecD is one of two (along with FecC) integral membrane protein components of the iron dicitrate ABC transporter.; iron-dicitrate transporter subunit FecD complement(739921..740904) Aggregatibacter actinomycetemcomitans D11S-1 8536535 YP_003255433.1 CDS fecC NC_013416.1 740904 741893 R part of the FecBCDE citrate-dependent iron (III) transport system; iron-dicitrate transporter permease subunit complement(740904..741893) Aggregatibacter actinomycetemcomitans D11S-1 8536536 YP_003255434.1 CDS fecB NC_013416.1 741893 742786 R part of the ABC transporter involved in the uptake of citrate-dependent Fe(3+); iron-dicitrate transporter substrate-binding subunit complement(741893..742786) Aggregatibacter actinomycetemcomitans D11S-1 8536537 YP_003255435.1 CDS D11S_0819 NC_013416.1 742856 743926 R identified by Glimmer3; putative; metallophosphoesterase complement(742856..743926) Aggregatibacter actinomycetemcomitans D11S-1 8536538 YP_003255436.1 CDS D11S_0820 NC_013416.1 743997 744440 D identified by Glimmer3; putative; hypothetical protein 743997..744440 Aggregatibacter actinomycetemcomitans D11S-1 8536539 YP_003255437.1 CDS recR NC_013416.1 744525 745127 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 744525..745127 Aggregatibacter actinomycetemcomitans D11S-1 8536540 YP_003255438.1 CDS D11S_0822 NC_013416.1 745159 747096 D decatenates replicating daughter chromosomes; DNA topoisomerase III 745159..747096 Aggregatibacter actinomycetemcomitans D11S-1 8536541 YP_003255439.1 CDS D11S_0823 NC_013416.1 747110 747241 D identified by Glimmer3; putative; hypothetical protein 747110..747241 Aggregatibacter actinomycetemcomitans D11S-1 8536542 YP_003255440.1 CDS secG NC_013416.1 747269 747607 D identified by Glimmer3; putative; preprotein translocase subunit SecG 747269..747607 Aggregatibacter actinomycetemcomitans D11S-1 8536543 YP_003255441.1 CDS D11S_0826 NC_013416.1 748083 748670 D identified by Glimmer3; putative; integrase 748083..748670 Aggregatibacter actinomycetemcomitans D11S-1 8536545 YP_003255442.1 CDS D11S_0827 NC_013416.1 748639 748944 D identified by Glimmer3; putative; hypothetical protein 748639..748944 Aggregatibacter actinomycetemcomitans D11S-1 8536546 YP_003255443.1 CDS D11S_0828 NC_013416.1 749525 749779 D identified by Glimmer3; putative; hypothetical protein 749525..749779 Aggregatibacter actinomycetemcomitans D11S-1 8536547 YP_003255444.1 CDS D11S_0829 NC_013416.1 750035 750808 R identified by Glimmer3; putative; monofunctional biosynthetic peptidoglycan transglycosylase complement(750035..750808) Aggregatibacter actinomycetemcomitans D11S-1 8536548 YP_003255445.1 CDS D11S_0830 NC_013416.1 750786 751094 R When complexed with L-tryptophan it binds the operator region of the trp operon and prevents the initiation of transcription; Trp operon repressor complement(750786..751094) Aggregatibacter actinomycetemcomitans D11S-1 8536549 YP_003255446.1 CDS D11S_0831 NC_013416.1 751127 753343 R identified by Glimmer3; putative; intracellular septation protein A complement(751127..753343) Aggregatibacter actinomycetemcomitans D11S-1 8536550 YP_003255447.1 CDS D11S_0832 NC_013416.1 753549 753845 R unknown function; YciI from Haemophilus influenzae presents crystal structure similarity to a muconolactone isomerase, but does not seem to catalyze any of the predicted reactions based on sequence and structure similarity; YciI-like protein complement(753549..753845) Aggregatibacter actinomycetemcomitans D11S-1 8536551 YP_003255448.1 CDS D11S_0833 NC_013416.1 753848 754318 R identified by Glimmer3; putative; hypothetical protein complement(753848..754318) Aggregatibacter actinomycetemcomitans D11S-1 8536552 YP_003255449.1 CDS D11S_0834 NC_013416.1 754322 754873 R Involved in cell division; probably involved in intracellular septation; intracellular septation protein A complement(754322..754873) Aggregatibacter actinomycetemcomitans D11S-1 8536553 YP_003255450.1 CDS D11S_0835 NC_013416.1 754879 755637 R identified by Glimmer3; putative; beta-methylgalactoside transporter inner membrane component complement(754879..755637) Aggregatibacter actinomycetemcomitans D11S-1 8536554 YP_003255451.1 CDS D11S_0836 NC_013416.1 755909 756133 D identified by Glimmer3; putative; outer membrane protein W 755909..756133 Aggregatibacter actinomycetemcomitans D11S-1 8536555 YP_003255452.1 CDS D11S_0837 NC_013416.1 756137 756556 D identified by Glimmer3; putative; outer membrane protein W 756137..756556 Aggregatibacter actinomycetemcomitans D11S-1 8536556 YP_003255453.1 CDS D11S_0838 NC_013416.1 756623 758299 R identified by Glimmer3; putative; RecN protein complement(756623..758299) Aggregatibacter actinomycetemcomitans D11S-1 8536557 YP_003255454.1 CDS D11S_0839 NC_013416.1 758373 759290 R identified by Glimmer3; putative; ATP-NAD kinase complement(758373..759290) Aggregatibacter actinomycetemcomitans D11S-1 8536558 YP_003255455.1 CDS D11S_0840 NC_013416.1 759335 759463 R identified by Glimmer3; putative; hypothetical protein complement(759335..759463) Aggregatibacter actinomycetemcomitans D11S-1 8536559 YP_003255456.1 CDS D11S_0841 NC_013416.1 759431 760009 D with DnaK and DnaJ acts in response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins; may act as a thermosensor; heat shock protein GrpE 759431..760009 Aggregatibacter actinomycetemcomitans D11S-1 8536560 YP_003255457.1 CDS D11S_0842 NC_013416.1 760120 763191 R identified by Glimmer3; putative; hemoglobin binding protein A complement(760120..763191) Aggregatibacter actinomycetemcomitans D11S-1 8536561 YP_003255458.1 CDS mnmC NC_013416.1 763381 765399 R catalyzes the formation of 5-methylaminomethyl-2-thiouridine in position 34 of the anticodon of tRNA molecules; 5-methylaminomethyl-2-thiouridine methyltransferase complement(763381..765399) Aggregatibacter actinomycetemcomitans D11S-1 8536562 YP_003255459.1 CDS D11S_0844 NC_013416.1 765569 766789 D FabB, beta-Ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase I 765569..766789 Aggregatibacter actinomycetemcomitans D11S-1 8536563 YP_003255460.1 CDS D11S_0845 NC_013416.1 766770 766904 R identified by Glimmer3; putative; hypothetical protein complement(766770..766904) Aggregatibacter actinomycetemcomitans D11S-1 8536564 YP_003255461.1 CDS D11S_0846 NC_013416.1 766930 768789 D identified by Glimmer3; putative; aerobic respiration control sensor protein ArcB 766930..768789 Aggregatibacter actinomycetemcomitans D11S-1 8536565 YP_003255462.1 CDS mglC NC_013416.1 768863 769873 R ABC transporter; functions in galactose transport; part of MglA2C2B transporter complex; beta-methylgalactoside transporter inner membrane component complement(768863..769873) Aggregatibacter actinomycetemcomitans D11S-1 8536566 YP_003255463.1 CDS D11S_0848 NC_013416.1 769892 771430 R with MglBC transports galactose or methyl galactoside into the cell; contains 2 ATP binding domains; galactose/methyl galaxtoside transporter ATP-binding protein complement(769892..771430) Aggregatibacter actinomycetemcomitans D11S-1 8536567 YP_003255464.1 CDS D11S_0849 NC_013416.1 771505 772497 R identified by Glimmer3; putative; D-galactose-binding periplasmic protein complement(771505..772497) Aggregatibacter actinomycetemcomitans D11S-1 8536568 YP_003255465.1 CDS D11S_0850 NC_013416.1 772712 773725 R identified by Glimmer3; putative; HTH-type transcriptional regulator GalS complement(772712..773725) Aggregatibacter actinomycetemcomitans D11S-1 8536569 YP_003255466.1 CDS D11S_0851 NC_013416.1 773977 775020 D catalyzes the interconversion of UDP-galactose and galactose-1-P with UDP-galactose and glucose-1-P; galactose-1-phosphate uridylyltransferase 773977..775020 Aggregatibacter actinomycetemcomitans D11S-1 8536570 YP_003255467.1 CDS D11S_0852 NC_013416.1 775087 776241 D catalyzes the formation of alpha-D-galactose 1-phosphate from D-galactose in galactose metabolism; galactokinase 775087..776241 Aggregatibacter actinomycetemcomitans D11S-1 8536571 YP_003255468.1 CDS galM NC_013416.1 776235 777266 D catalyzes the conversion of alpha-aldose to the beta-anomer; active on D-glucose, L-arabinose, D-xylose, D-galactose, maltose and lactose; links the metabolism of lactose and galactose; aldose 1-epimerase 776235..777266 Aggregatibacter actinomycetemcomitans D11S-1 8536572 YP_003255469.1 CDS D11S_0855 NC_013416.1 777531 779030 R identified by Glimmer3; putative; DsbB family disulfide bond formation protein complement(777531..779030) Aggregatibacter actinomycetemcomitans D11S-1 8536574 YP_003255470.1 CDS D11S_0856 NC_013416.1 779309 780742 R identified by Glimmer3; putative; inner membrane protein YbhI complement(779309..780742) Aggregatibacter actinomycetemcomitans D11S-1 8536575 YP_003255471.1 CDS D11S_0857 NC_013416.1 780729 782141 R identified by Glimmer3; putative; apo-citrate lyase phosphoribosyl-dephospho-CoA transferase/2-(5-triphosphoribosyl)-3-dephosphocoenzyme- A synthase complement(780729..782141) Aggregatibacter actinomycetemcomitans D11S-1 8536576 YP_003255472.1 CDS D11S_0858 NC_013416.1 782335 783837 R identified by Glimmer3; putative; citrate lyase subunit alpha complement(782335..783837) Aggregatibacter actinomycetemcomitans D11S-1 8536577 YP_003255473.1 CDS D11S_0859 NC_013416.1 783852 784727 R identified by Glimmer3; putative; citrate lyase subunit beta complement(783852..784727) Aggregatibacter actinomycetemcomitans D11S-1 8536578 YP_003255474.1 CDS D11S_0860 NC_013416.1 784724 785011 R acyl carrier protein; with CitE and CitF catalyzes the formation of oxaloacetate from citrate; citrate lyase subunit gamma complement(784724..785011) Aggregatibacter actinomycetemcomitans D11S-1 8536579 YP_003255475.1 CDS D11S_0861 NC_013416.1 785051 786058 R identified by Glimmer3; putative; [citrate (pro-3S)-lyase] ligase complement(785051..786058) Aggregatibacter actinomycetemcomitans D11S-1 8536580 YP_003255476.1 CDS D11S_0862 NC_013416.1 786096 786224 R identified by Glimmer3; putative; hypothetical protein complement(786096..786224) Aggregatibacter actinomycetemcomitans D11S-1 8536581 YP_003255477.1 CDS D11S_0863 NC_013416.1 786304 787200 D identified by Glimmer3; putative; magnesium and cobalt efflux protein CorC 786304..787200 Aggregatibacter actinomycetemcomitans D11S-1 8536582 YP_003255478.1 CDS lnt NC_013416.1 787592 789136 D Transfers the fatty acyl group on membrane lipoproteins; apolipoprotein N-acyltransferase 787592..789136 Aggregatibacter actinomycetemcomitans D11S-1 8536583 YP_003255479.1 CDS D11S_0865 NC_013416.1 789199 789417 R identified by Glimmer3; putative; translation initiation factor IF-1 complement(789199..789417) Aggregatibacter actinomycetemcomitans D11S-1 8536584 YP_003255480.1 CDS D11S_0866 NC_013416.1 789472 789594 D identified by Glimmer3; putative; hypothetical protein 789472..789594 Aggregatibacter actinomycetemcomitans D11S-1 8536585 YP_003255481.1 CDS D11S_0867 NC_013416.1 789637 790944 D catalyzes the removal of an N-terminal amino acid from a peptide or arylamide; aminopeptidase B 789637..790944 Aggregatibacter actinomycetemcomitans D11S-1 8536586 YP_003255482.1 CDS ndk NC_013416.1 790956 791381 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 790956..791381 Aggregatibacter actinomycetemcomitans D11S-1 8536587 YP_003255483.1 CDS D11S_0869 NC_013416.1 791517 792662 D identified by Glimmer3; putative; Chb protein 791517..792662 Aggregatibacter actinomycetemcomitans D11S-1 8536588 YP_003255484.1 CDS D11S_0870 NC_013416.1 792655 792774 D identified by Glimmer3; putative; hypothetical protein 792655..792774 Aggregatibacter actinomycetemcomitans D11S-1 8536589 YP_003255485.1 CDS D11S_0871 NC_013416.1 792752 793864 R identified by Glimmer3; putative; putative ATPase complement(792752..793864) Aggregatibacter actinomycetemcomitans D11S-1 8536590 YP_003255486.1 CDS metG NC_013416.1 794037 796097 D methionine--tRNA ligase; MetRS; adds methionine to tRNA(Met) with cleavage of ATP to AMP and diphosphate; some MetRS enzymes form dimers depending on a C-terminal domain that is also found in other proteins such as Trbp111 in Aquifex aeolicus and the cold-shock protein CsaA from Bacillus subtilis while others do not; four subfamilies exist based on sequence motifs and zinc content; methionyl-tRNA synthetase 794037..796097 Aggregatibacter actinomycetemcomitans D11S-1 8536591 YP_003255487.1 CDS D11S_0873 NC_013416.1 796231 796425 R identified by Glimmer3; putative; FeS assembly protein IscX complement(796231..796425) Aggregatibacter actinomycetemcomitans D11S-1 8536592 YP_003255488.1 CDS D11S_0874 NC_013416.1 796425 796766 R identified by Glimmer3; putative; 2Fe-2S type ferredoxin complement(796425..796766) Aggregatibacter actinomycetemcomitans D11S-1 8536593 YP_003255489.1 CDS hscA NC_013416.1 796778 798637 R involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA complement(796778..798637) Aggregatibacter actinomycetemcomitans D11S-1 8536594 YP_003255490.1 CDS hscB NC_013416.1 798658 799179 R J-type co-chaperone that regulates the ATPase and peptide-binding activity of Hsc66 chaperone; may function in biogenesis of iron-sulfur proteins; co-chaperone HscB complement(798658..799179) Aggregatibacter actinomycetemcomitans D11S-1 8536595 YP_003255491.1 CDS D11S_0877 NC_013416.1 799191 799514 R identified by Glimmer3; putative; iron-sulfur cluster assembly protein IscA complement(799191..799514) Aggregatibacter actinomycetemcomitans D11S-1 8536596 YP_003255492.1 CDS D11S_0878 NC_013416.1 799646 800029 R identified by Glimmer3; putative; FeS cluster assembly scaffold IscU complement(799646..800029) Aggregatibacter actinomycetemcomitans D11S-1 8536597 YP_003255493.1 CDS D11S_0879 NC_013416.1 800089 801303 R catalyzes the removal of elemental sulfur from cysteine to produce alanine; involved in NAD biosynthesis; cysteine desulfurase complement(800089..801303) Aggregatibacter actinomycetemcomitans D11S-1 8536598 YP_003255494.1 CDS D11S_0880 NC_013416.1 801357 801830 R identified by Glimmer3; putative; iron-sulfur cluster assembly transcription factor IscR complement(801357..801830) Aggregatibacter actinomycetemcomitans D11S-1 8536599 YP_003255495.1 CDS D11S_0881 NC_013416.1 801908 802633 R identified by Glimmer3; putative; TrmH family RNA methyltransferase complement(801908..802633) Aggregatibacter actinomycetemcomitans D11S-1 8536600 YP_003255496.1 CDS D11S_0882 NC_013416.1 802784 803584 D identified by Glimmer3; putative; inositol-1-monophosphatase 802784..803584 Aggregatibacter actinomycetemcomitans D11S-1 8536601 YP_003255497.1 CDS D11S_0883 NC_013416.1 803637 805748 R identified by Glimmer3; putative; hypothetical protein complement(803637..805748) Aggregatibacter actinomycetemcomitans D11S-1 8536602 YP_003255498.1 CDS fbpC NC_013416.1 806027 807073 R Part of the ABC transporter complex FbpABC involved in Fe(3+) ions import; ferric transporter ATP-binding subunit complement(806027..807073) Aggregatibacter actinomycetemcomitans D11S-1 8536603 YP_003255499.1 CDS D11S_0885 NC_013416.1 807089 809146 R identified by Glimmer3; putative; binding-protein-dependent transport systems inner membrane component complement(807089..809146) Aggregatibacter actinomycetemcomitans D11S-1 8536604 YP_003255500.1 CDS D11S_0886 NC_013416.1 809174 809926 R identified by Glimmer3; putative; Fe3+ ABC transporter iron-binding protein complement(809174..809926) Aggregatibacter actinomycetemcomitans D11S-1 8536605 YP_003255501.1 CDS D11S_0887 NC_013416.1 810379 811419 R identified by Glimmer3; putative; cystathionine beta-lyase complement(810379..811419) Aggregatibacter actinomycetemcomitans D11S-1 8536606 YP_003255502.1 CDS D11S_0888 NC_013416.1 811728 812378 D functions in pyrimidine salvage; pyrimidine ribonucleoside kinase; phosphorylates nucleosides or dinucleosides to make UMP or CMP using ATP or GTP as the donor; uridine kinase 811728..812378 Aggregatibacter actinomycetemcomitans D11S-1 8536607 YP_003255503.1 CDS dcd NC_013416.1 812388 812972 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 812388..812972 Aggregatibacter actinomycetemcomitans D11S-1 8536608 YP_003255504.1 CDS D11S_0890 NC_013416.1 812973 814175 D identified by Glimmer3; putative; sugar efflux transporter 812973..814175 Aggregatibacter actinomycetemcomitans D11S-1 8536609 YP_003255505.1 CDS D11S_0891 NC_013416.1 814177 815373 D identified by Glimmer3; putative; sugar efflux transporter 814177..815373 Aggregatibacter actinomycetemcomitans D11S-1 8536610 YP_003255506.1 CDS engA NC_013416.1 815443 816975 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(815443..816975) Aggregatibacter actinomycetemcomitans D11S-1 8536611 YP_003255507.1 CDS D11S_0893 NC_013416.1 817263 818246 D identified by Glimmer3; putative; curved DNA-binding protein 817263..818246 Aggregatibacter actinomycetemcomitans D11S-1 8536612 YP_003255508.1 CDS D11S_0894 NC_013416.1 818269 818559 D identified by Glimmer3; putative; MerR family regulatory protein 818269..818559 Aggregatibacter actinomycetemcomitans D11S-1 8536613 YP_003255509.1 CDS D11S_0895 NC_013416.1 818624 819922 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(818624..819922) Aggregatibacter actinomycetemcomitans D11S-1 8536614 YP_003255510.1 CDS D11S_0896 NC_013416.1 820010 820975 R identified by Glimmer3; putative; methyltransferase complement(820010..820975) Aggregatibacter actinomycetemcomitans D11S-1 8536615 YP_003255511.1 CDS D11S_0897 NC_013416.1 820989 822509 R identified by Glimmer3; putative; sodium/proline symporter complement(820989..822509) Aggregatibacter actinomycetemcomitans D11S-1 8536616 YP_003255512.1 CDS D11S_0898 NC_013416.1 822650 824125 D involved in the processing of the 5'end of 16S rRNA; ribonuclease G 822650..824125 Aggregatibacter actinomycetemcomitans D11S-1 8536617 YP_003255513.1 CDS D11S_0899 NC_013416.1 824242 824889 D cofactor involved in the reduction of disulfides; glutaredoxin 2 824242..824889 Aggregatibacter actinomycetemcomitans D11S-1 8536618 YP_003255514.1 CDS D11S_0900 NC_013416.1 824905 825603 D identified by Glimmer3; putative; Sir2 family transcriptional regulator 824905..825603 Aggregatibacter actinomycetemcomitans D11S-1 8536619 YP_003255515.1 CDS D11S_0901 NC_013416.1 825676 826047 D identified by Glimmer3; putative; IS3/IS911 transposase 825676..826047 Aggregatibacter actinomycetemcomitans D11S-1 8536620 YP_003255516.1 CDS D11S_0902 NC_013416.1 826945 827487 R identified by Glimmer3; putative; relaxase complement(826945..827487) Aggregatibacter actinomycetemcomitans D11S-1 8536621 YP_003255517.1 CDS D11S_0903 NC_013416.1 827841 827960 D identified by Glimmer3; putative; hypothetical protein 827841..827960 Aggregatibacter actinomycetemcomitans D11S-1 8536622 YP_003255518.1 CDS D11S_0904 NC_013416.1 828274 828453 D identified by Glimmer3; putative; hypothetical protein 828274..828453 Aggregatibacter actinomycetemcomitans D11S-1 8536623 YP_003255519.1 CDS D11S_0905 NC_013416.1 829026 829280 D identified by Glimmer3; putative; hypothetical protein 829026..829280 Aggregatibacter actinomycetemcomitans D11S-1 8536624 YP_003255520.1 CDS D11S_0906 NC_013416.1 829283 829627 D identified by Glimmer3; putative; transcriptional modulator of MazE/toxin, MazF 829283..829627 Aggregatibacter actinomycetemcomitans D11S-1 8536625 YP_003255521.1 CDS D11S_0907 NC_013416.1 829711 829977 D identified by Glimmer3; putative; putative virulence protein 829711..829977 Aggregatibacter actinomycetemcomitans D11S-1 8536626 YP_003255522.1 CDS D11S_0908 NC_013416.1 830196 830864 D identified by Glimmer3; putative; cytolethal distending toxin protein A 830196..830864 Aggregatibacter actinomycetemcomitans D11S-1 8536627 YP_003255523.1 CDS D11S_0909 NC_013416.1 830879 831730 D identified by Glimmer3; putative; cytolethal distending toxin protein B 830879..831730 Aggregatibacter actinomycetemcomitans D11S-1 8536628 YP_003255524.1 CDS D11S_0910 NC_013416.1 831741 832301 D identified by Glimmer3; putative; cytolethal distending toxin protein C 831741..832301 Aggregatibacter actinomycetemcomitans D11S-1 8536629 YP_003255525.1 CDS D11S_0911 NC_013416.1 833519 833662 R identified by Glimmer3; putative; hypothetical protein complement(833519..833662) Aggregatibacter actinomycetemcomitans D11S-1 8536630 YP_003255526.1 CDS D11S_0912 NC_013416.1 833670 833831 R identified by Glimmer3; putative; hypothetical protein complement(833670..833831) Aggregatibacter actinomycetemcomitans D11S-1 8536631 YP_003255527.1 CDS D11S_0916 NC_013416.1 834555 835112 R identified by Glimmer3; putative; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase complement(834555..835112) Aggregatibacter actinomycetemcomitans D11S-1 8536635 YP_003255528.1 CDS D11S_0917 NC_013416.1 835367 836557 D catalyzes the formation of L-homocysteine from cystathionine; cystathionine beta-lyase 835367..836557 Aggregatibacter actinomycetemcomitans D11S-1 8536636 YP_003255529.1 CDS D11S_0918 NC_013416.1 836771 837823 D identified by Glimmer3; putative; outer membrane protein 39 836771..837823 Aggregatibacter actinomycetemcomitans D11S-1 8536637 YP_003255530.1 CDS D11S_0919 NC_013416.1 837967 838224 D identified by Glimmer3; putative; hypothetical protein 837967..838224 Aggregatibacter actinomycetemcomitans D11S-1 8536638 YP_003255531.1 CDS D11S_0920 NC_013416.1 838224 838571 D identified by Glimmer3; putative; hypothetical protein 838224..838571 Aggregatibacter actinomycetemcomitans D11S-1 8536639 YP_003255532.1 CDS D11S_0921 NC_013416.1 838649 839776 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(838649..839776) Aggregatibacter actinomycetemcomitans D11S-1 8536640 YP_003255533.1 CDS dnaK NC_013416.1 840211 842112 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(840211..842112) Aggregatibacter actinomycetemcomitans D11S-1 8536641 YP_003255534.1 CDS D11S_0923 NC_013416.1 842398 843831 D identified by Glimmer3; putative; hypothetical protein 842398..843831 Aggregatibacter actinomycetemcomitans D11S-1 8536642 YP_003255535.1 CDS argS NC_013416.1 844191 845924 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(844191..845924) Aggregatibacter actinomycetemcomitans D11S-1 8536643 YP_003255536.1 CDS D11S_0925 NC_013416.1 846021 846608 D identified by Glimmer3; putative; hypothetical protein 846021..846608 Aggregatibacter actinomycetemcomitans D11S-1 8536644 YP_003255537.1 CDS D11S_0926 NC_013416.1 846650 847105 D identified by Glimmer3; putative; outer membrane lipoprotein pcp 846650..847105 Aggregatibacter actinomycetemcomitans D11S-1 8536645 YP_003255538.1 CDS prfA NC_013416.1 847245 848327 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 847245..848327 Aggregatibacter actinomycetemcomitans D11S-1 8536646 YP_003255539.1 CDS D11S_0928 NC_013416.1 848367 849266 D identified by Glimmer3; putative; protein-(glutamine-N5) methyltransferase 848367..849266 Aggregatibacter actinomycetemcomitans D11S-1 8536647 YP_003255540.1 CDS D11S_0929 NC_013416.1 849276 850130 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 849276..850130 Aggregatibacter actinomycetemcomitans D11S-1 8536648 YP_003255541.1 CDS D11S_0930 NC_013416.1 850310 850819 D identified by Glimmer3; putative; NlpC 850310..850819 Aggregatibacter actinomycetemcomitans D11S-1 8536649 YP_003255542.1 CDS D11S_0931 NC_013416.1 851216 851467 R identified by Glimmer3; putative; hypothetical protein complement(851216..851467) Aggregatibacter actinomycetemcomitans D11S-1 8536650 YP_003255543.1 CDS D11S_0932 NC_013416.1 851551 852213 D identified by Glimmer3; putative; septum site-determining protein MinC 851551..852213 Aggregatibacter actinomycetemcomitans D11S-1 8536651 YP_003255544.1 CDS D11S_0933 NC_013416.1 852235 852780 R identified by Glimmer3; putative; hypothetical protein complement(852235..852780) Aggregatibacter actinomycetemcomitans D11S-1 8536652 YP_003255545.1 CDS D11S_0934 NC_013416.1 853004 853471 R identified by Glimmer3; putative; phosphohistidine phosphatase SixA complement(853004..853471) Aggregatibacter actinomycetemcomitans D11S-1 8536653 YP_003255546.1 CDS glmM NC_013416.1 853484 854821 R catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase complement(853484..854821) Aggregatibacter actinomycetemcomitans D11S-1 8536654 YP_003255547.1 CDS D11S_0936 NC_013416.1 854850 855677 R identified by Glimmer3; putative; dihydropteroate synthase complement(854850..855677) Aggregatibacter actinomycetemcomitans D11S-1 8536655 YP_003255548.1 CDS D11S_0937 NC_013416.1 855847 856881 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(855847..856881) Aggregatibacter actinomycetemcomitans D11S-1 8536656 YP_003255549.1 CDS D11S_0938 NC_013416.1 857005 857259 R identified by Glimmer3; putative; hypothetical protein complement(857005..857259) Aggregatibacter actinomycetemcomitans D11S-1 8536657 YP_003255550.1 CDS D11S_0939 NC_013416.1 857681 858130 D identified by Glimmer3; putative; ImpA 857681..858130 Aggregatibacter actinomycetemcomitans D11S-1 8536658 YP_003255551.1 CDS D11S_0940 NC_013416.1 858403 858567 R identified by Glimmer3; putative; hypothetical protein complement(858403..858567) Aggregatibacter actinomycetemcomitans D11S-1 8536659 YP_003255552.1 CDS D11S_0941 NC_013416.1 858862 860328 R catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5'-monophosphate dehydrogenase complement(858862..860328) Aggregatibacter actinomycetemcomitans D11S-1 8536660 YP_003255553.1 CDS D11S_0942 NC_013416.1 860470 861402 D catalyzes the formation of biotinyl-5'-AMP, also acts as a transcriptional repressor of the biotin operon; biotin--protein ligase 860470..861402 Aggregatibacter actinomycetemcomitans D11S-1 8536661 YP_003255554.1 CDS D11S_0943 NC_013416.1 861489 861692 D identified by Glimmer3; putative; hypothetical protein 861489..861692 Aggregatibacter actinomycetemcomitans D11S-1 8536662 YP_003255556.1 CDS D11S_0949 NC_013416.1 867547 868365 R identified by Glimmer3; putative; peptide transport system ATP-binding protein SapF complement(867547..868365) Aggregatibacter actinomycetemcomitans D11S-1 8536668 YP_003255557.1 CDS D11S_0950 NC_013416.1 868369 869421 R identified by Glimmer3; putative; peptide transport system ATP-binding protein SapD complement(868369..869421) Aggregatibacter actinomycetemcomitans D11S-1 8536669 YP_003255558.1 CDS D11S_0951 NC_013416.1 869429 870316 R identified by Glimmer3; putative; dipeptide transport system permease DppC complement(869429..870316) Aggregatibacter actinomycetemcomitans D11S-1 8536670 YP_003255559.1 CDS D11S_0952 NC_013416.1 870306 871271 R identified by Glimmer3; putative; peptide transport system permease SapB complement(870306..871271) Aggregatibacter actinomycetemcomitans D11S-1 8536671 YP_003255560.1 CDS D11S_0953 NC_013416.1 871271 872902 R identified by Glimmer3; putative; SapA complement(871271..872902) Aggregatibacter actinomycetemcomitans D11S-1 8536672 YP_003255561.1 CDS D11S_0954 NC_013416.1 873167 874582 D identified by Glimmer3; putative; hypothetical protein 873167..874582 Aggregatibacter actinomycetemcomitans D11S-1 8536673 YP_003255562.1 CDS D11S_0955 NC_013416.1 874595 875674 D identified by Glimmer3; putative; hypothetical protein 874595..875674 Aggregatibacter actinomycetemcomitans D11S-1 8536674 YP_003255563.1 CDS D11S_0956 NC_013416.1 875758 876717 D identified by Glimmer3; putative; GTP-binding proten HflX 875758..876717 Aggregatibacter actinomycetemcomitans D11S-1 8536675 YP_003255564.1 CDS D11S_0957 NC_013416.1 876714 876848 R identified by Glimmer3; putative; hypothetical protein complement(876714..876848) Aggregatibacter actinomycetemcomitans D11S-1 8536676 YP_003255565.1 CDS D11S_0958 NC_013416.1 876933 877082 R identified by Glimmer3; putative; hypothetical protein complement(876933..877082) Aggregatibacter actinomycetemcomitans D11S-1 8536677 YP_003255566.1 CDS D11S_0959 NC_013416.1 877097 877393 R identified by Glimmer3; putative; Host factor-I protein complement(877097..877393) Aggregatibacter actinomycetemcomitans D11S-1 8536678 YP_003255567.1 CDS miaA NC_013416.1 877512 878456 R IPP transferase; isopentenyltransferase; involved in tRNA modification; in Escherichia coli this enzyme catalyzes the addition of a delta2-isopentenyl group from dimethylallyl diphosphate to the N6-nitrogen of adenosine adjacent to the anticodon of tRNA species that read codons starting with uracil; further tRNA modifications may occur; mutations in miaA result in defects in translation efficiency and fidelity; tRNA delta(2)-isopentenylpyrophosphate transferase complement(877512..878456) Aggregatibacter actinomycetemcomitans D11S-1 8536679 YP_003255568.1 CDS mutL NC_013416.1 878471 880321 R This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. Promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex; DNA mismatch repair protein complement(878471..880321) Aggregatibacter actinomycetemcomitans D11S-1 8536680 YP_003255569.1 CDS D11S_0962 NC_013416.1 880321 881808 R identified by Glimmer3; putative; N-acetylmuramoyl-L-alanine amidase complement(880321..881808) Aggregatibacter actinomycetemcomitans D11S-1 8536681 YP_003255570.1 CDS D11S_0963 NC_013416.1 881805 882257 R identified by Glimmer3; putative; hypothetical protein complement(881805..882257) Aggregatibacter actinomycetemcomitans D11S-1 8536682 YP_003255571.1 CDS D11S_0964 NC_013416.1 882256 882402 D identified by Glimmer3; putative; hypothetical protein 882256..882402 Aggregatibacter actinomycetemcomitans D11S-1 8536683 YP_003255572.1 CDS D11S_0965 NC_013416.1 882455 884248 R identified by Glimmer3; putative; hypothetical protein complement(882455..884248) Aggregatibacter actinomycetemcomitans D11S-1 8536684 YP_003255573.1 CDS D11S_0966 NC_013416.1 884636 885556 R identified by Glimmer3; putative; glycosyl transferase, family 2 complement(884636..885556) Aggregatibacter actinomycetemcomitans D11S-1 8536685 YP_003255574.1 CDS D11S_0967 NC_013416.1 885564 887072 R identified by Glimmer3; putative; putative inner membrane protein complement(885564..887072) Aggregatibacter actinomycetemcomitans D11S-1 8536686 YP_003255575.1 CDS D11S_0968 NC_013416.1 887059 887676 R identified by Glimmer3; putative; integral membrane protein complement(887059..887676) Aggregatibacter actinomycetemcomitans D11S-1 8536687 YP_003255576.1 CDS D11S_0969 NC_013416.1 887705 889219 R identified by Glimmer3; putative; Dca complement(887705..889219) Aggregatibacter actinomycetemcomitans D11S-1 8536688 YP_003255577.1 CDS D11S_0971 NC_013416.1 889738 890286 R 3'-5' exoribonuclease specific for small oligoribonuclotides; oligoribonuclease complement(889738..890286) Aggregatibacter actinomycetemcomitans D11S-1 8536690 YP_003255578.1 CDS D11S_0972 NC_013416.1 890357 891397 D EngC; RsgA; CpgA; circularly permuted GTPase; ribosome small subunit-dependent GTPase A; has the pattern G4-G1-G3 as opposed to other GTPases; interacts strongly with 30S ribosome which stimulates GTPase activity; ribosome-associated GTPase 890357..891397 Aggregatibacter actinomycetemcomitans D11S-1 8536691 YP_003255579.1 CDS D11S_0973 NC_013416.1 891618 891875 D identified by Glimmer3; putative; phosphocarrier protein HPr 891618..891875 Aggregatibacter actinomycetemcomitans D11S-1 8536692 YP_003255580.1 CDS D11S_0974 NC_013416.1 891989 893716 D Phosphotransferase system, enzyme I; transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein; part of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active-transport system; phosphoenolpyruvate-protein phosphotransferase 891989..893716 Aggregatibacter actinomycetemcomitans D11S-1 8536693 YP_003255581.1 CDS D11S_0975 NC_013416.1 893777 894277 D functions in phosphoenolpyruvate-(PEP)-dependent phosphotransferase (PTS) system; functions in the transport and phosphorylation of glucose; PTS system glucose-specific transporter subunit 893777..894277 Aggregatibacter actinomycetemcomitans D11S-1 8536694 YP_003255582.1 CDS D11S_0976 NC_013416.1 894403 896442 R identified by Glimmer3; putative; oligopeptidase A complement(894403..896442) Aggregatibacter actinomycetemcomitans D11S-1 8536695 YP_003255583.1 CDS D11S_0977 NC_013416.1 896584 896949 D identified by Glimmer3; putative; hypothetical protein 896584..896949 Aggregatibacter actinomycetemcomitans D11S-1 8536696 YP_003255584.1 CDS D11S_0978 NC_013416.1 897005 898543 D identified by Glimmer3; putative; periplasmic oligopeptide-binding protein 897005..898543 Aggregatibacter actinomycetemcomitans D11S-1 8536697 YP_003255585.1 CDS D11S_0979 NC_013416.1 898818 899405 R identified by Glimmer3; putative; hypothetical protein complement(898818..899405) Aggregatibacter actinomycetemcomitans D11S-1 8536698 YP_003255586.1 CDS D11S_0980 NC_013416.1 899408 900382 R catalyzes the formation of 4-amino-4-deoxychorismate from chorismate and glutamine; para-aminobenzoate synthase component I complement(899408..900382) Aggregatibacter actinomycetemcomitans D11S-1 8536699 YP_003255587.1 CDS D11S_0981 NC_013416.1 900484 901050 D catalyzes the formation of anthranilate from chorismate and glutamine; functions in tryptophan biosynthesis; putative anthranilate synthase component II 900484..901050 Aggregatibacter actinomycetemcomitans D11S-1 8536700 YP_003255588.1 CDS D11S_0982 NC_013416.1 901206 902150 D Catalyzes the reduction of hydroxypyruvate to form D-glycerate, using NADH as an electron donor; glycerate dehydrogenase 901206..902150 Aggregatibacter actinomycetemcomitans D11S-1 8536701 YP_003255589.1 CDS D11S_0983 NC_013416.1 902693 903877 D identified by Glimmer3; putative; lipoprotein releasing system, transmembrane protein LolC 902693..903877 Aggregatibacter actinomycetemcomitans D11S-1 8536702 YP_003255590.1 CDS D11S_0984 NC_013416.1 903892 904578 D identified by Glimmer3; putative; lipoprotein releasing system, ATP-binding protein 903892..904578 Aggregatibacter actinomycetemcomitans D11S-1 8536703 YP_003255591.1 CDS D11S_0985 NC_013416.1 904578 905828 D part of the ATP-dependent transport system LolCDE; responsible for the localization of lipoproteins to the periplasmic surface of the outer membrane; outer membrane-specific lipoprotein transporter subunit LolE 904578..905828 Aggregatibacter actinomycetemcomitans D11S-1 8536704 YP_003255592.1 CDS D11S_0986 NC_013416.1 905929 907008 D catalyzes the formation of 3-deoxy-D-arabino-hept-2-ulosonate 7 phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate, phenylalanine sensitive; phospho-2-dehydro-3-deoxyheptonate aldolase 905929..907008 Aggregatibacter actinomycetemcomitans D11S-1 8536705 YP_003255593.1 CDS D11S_0987 NC_013416.1 907017 907139 R identified by Glimmer3; putative; hypothetical protein complement(907017..907139) Aggregatibacter actinomycetemcomitans D11S-1 8536706 YP_003255594.1 CDS D11S_0988 NC_013416.1 907154 908560 D identified by Glimmer3; putative; replicative DNA helicase 907154..908560 Aggregatibacter actinomycetemcomitans D11S-1 8536707 YP_003255595.1 CDS alr NC_013416.1 908584 909666 D converts L-alanine to D-alanine which is used in cell wall biosynthesis; binds one pyridoxal phosphate per monomer; forms a homodimer; alanine racemase 908584..909666 Aggregatibacter actinomycetemcomitans D11S-1 8536708 YP_003255596.1 CDS pgi NC_013416.1 909682 911331 D functions in sugar metabolism in glycolysis and the Embden-Meyerhof pathways (EMP) and in gluconeogenesis; catalyzes reversible isomerization of glucose-6-phosphate to fructose-6-phosphate; member of PGI family; glucose-6-phosphate isomerase 909682..911331 Aggregatibacter actinomycetemcomitans D11S-1 8536709 YP_003255597.1 CDS ribH NC_013416.1 911471 911944 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 911471..911944 Aggregatibacter actinomycetemcomitans D11S-1 8536710 YP_003255598.1 CDS nusB NC_013416.1 911951 912376 D Regulates rRNA biosynthesis by transcriptional antitermination; transcription antitermination protein NusB 911951..912376 Aggregatibacter actinomycetemcomitans D11S-1 8536711 YP_003255599.1 CDS D11S_0993 NC_013416.1 912395 913378 D identified by Glimmer3; putative; thiamine-monophosphate kinase 912395..913378 Aggregatibacter actinomycetemcomitans D11S-1 8536712 YP_003255600.1 CDS D11S_0994 NC_013416.1 913388 913879 D identified by Glimmer3; putative; phosphatidylglycerophosphatase A 913388..913879 Aggregatibacter actinomycetemcomitans D11S-1 8536713 YP_003255601.1 CDS D11S_0995 NC_013416.1 913888 914508 D identified by Glimmer3; putative; threonine efflux protein 913888..914508 Aggregatibacter actinomycetemcomitans D11S-1 8536714 YP_003255602.1 CDS D11S_0996 NC_013416.1 914530 915342 D catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase 914530..915342 Aggregatibacter actinomycetemcomitans D11S-1 8536715 YP_003255603.1 CDS D11S_0997 NC_013416.1 915370 915501 D identified by Glimmer3; putative; hypothetical protein 915370..915501 Aggregatibacter actinomycetemcomitans D11S-1 8536716 YP_003255604.1 CDS D11S_0998 NC_013416.1 915454 915702 R identified by Glimmer3; putative; Fdx protein complement(915454..915702) Aggregatibacter actinomycetemcomitans D11S-1 8536717 YP_003255605.1 CDS D11S_0999 NC_013416.1 915770 916039 R identified by Glimmer3; putative; hypothetical protein complement(915770..916039) Aggregatibacter actinomycetemcomitans D11S-1 8536718 YP_003255606.1 CDS nrdB NC_013416.1 916061 917191 R B2 or R2 protein; type 1a enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdA; ribonucleotide-diphosphate reductase subunit beta complement(916061..917191) Aggregatibacter actinomycetemcomitans D11S-1 8536719 YP_003255607.1 CDS D11S_1001 NC_013416.1 918103 920373 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(918103..920373) Aggregatibacter actinomycetemcomitans D11S-1 8536720 YP_003255608.1 CDS D11S_1002 NC_013416.1 920676 922148 R identified by Glimmer3; putative; similar to type I restriction enzyme EcoR124II R protein; type I restriction enzyme R protein complement(920676..922148) Aggregatibacter actinomycetemcomitans D11S-1 8536721 YP_003255609.1 CDS D11S_1003 NC_013416.1 922286 922408 D identified by Glimmer3; putative; hypothetical protein 922286..922408 Aggregatibacter actinomycetemcomitans D11S-1 8536722 YP_003255610.1 CDS D11S_1004 NC_013416.1 922419 923447 D identified by Glimmer3; putative; Fe3+ ABC transporter iron-binding protein 922419..923447 Aggregatibacter actinomycetemcomitans D11S-1 8536723 YP_003255611.1 CDS D11S_1005 NC_013416.1 923499 925529 D identified by Glimmer3; putative; ferric transport system permease 923499..925529 Aggregatibacter actinomycetemcomitans D11S-1 8536724 YP_003255612.1 CDS D11S_1006 NC_013416.1 925513 926553 D identified by Glimmer3; putative; Fe(3+) ions import ATP-binding protein FbpC 925513..926553 Aggregatibacter actinomycetemcomitans D11S-1 8536725 YP_003255613.1 CDS D11S_1007 NC_013416.1 926512 926625 R identified by Glimmer3; putative; hypothetical protein complement(926512..926625) Aggregatibacter actinomycetemcomitans D11S-1 8536726 YP_003255614.1 CDS malS NC_013416.1 926610 928661 R periplasmic enzyme that degrades maltodextrins that enter via the outer membrane porin LamB; hydrolyzes alpha-(1,4) glycosidic linkages; contains internal disulfide bonds; periplasmic alpha-amylase complement(926610..928661) Aggregatibacter actinomycetemcomitans D11S-1 8536727 YP_003255615.1 CDS malG NC_013416.1 928756 929646 R with MalKFE is involved in the transport of maltose into the cell; maltose transporter permease complement(928756..929646) Aggregatibacter actinomycetemcomitans D11S-1 8536728 YP_003255616.1 CDS malF NC_013416.1 929668 931212 R with MalKGE is involved in maltose transport into the cell; maltose transporter membrane protein complement(929668..931212) Aggregatibacter actinomycetemcomitans D11S-1 8536729 YP_003255617.1 CDS D11S_1011 NC_013416.1 931236 931367 R identified by Glimmer3; putative; hypothetical protein complement(931236..931367) Aggregatibacter actinomycetemcomitans D11S-1 8536730 YP_003255618.1 CDS malE NC_013416.1 931336 932526 R functions in the MalKFGE ABC transporter complex to transport maltose into the cell by using ATP hydrolysis; maltose ABC transporter periplasmic protein complement(931336..932526) Aggregatibacter actinomycetemcomitans D11S-1 8536731 YP_003255619.1 CDS D11S_1013 NC_013416.1 932983 934101 D with malEFG is involved in import of maltose/maltodextrin; maltose/maltodextrin transporter ATP-binding protein 932983..934101 Aggregatibacter actinomycetemcomitans D11S-1 8536732 YP_003255620.1 CDS lamB NC_013416.1 934178 935461 D porin involved in the transport of maltose and maltodextrins; maltoporin 934178..935461 Aggregatibacter actinomycetemcomitans D11S-1 8536733 YP_003255621.1 CDS D11S_1015 NC_013416.1 935547 936446 D identified by Glimmer3; putative; maltose regulon periplasmic protein 935547..936446 Aggregatibacter actinomycetemcomitans D11S-1 8536734 YP_003255622.1 CDS D11S_1016 NC_013416.1 936517 936648 D identified by Glimmer3; putative; hypothetical protein 936517..936648 Aggregatibacter actinomycetemcomitans D11S-1 8536735 YP_003255623.1 CDS D11S_1017 NC_013416.1 936823 937554 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB complement(936823..937554) Aggregatibacter actinomycetemcomitans D11S-1 8536736 YP_003255624.1 CDS D11S_1018 NC_013416.1 937570 938784 R identified by Glimmer3; putative; molybdopterin biosynthesis MoeA protein complement(937570..938784) Aggregatibacter actinomycetemcomitans D11S-1 8536737 YP_003255625.1 CDS folE NC_013416.1 938913 939569 D involved in the first step of tetrahydrofolate biosynthesis; catalyzes the formation of formate and 2-amino-4-hydroxy-6-(erythro-1,2, 3-trihydroxypropyl)dihydropteridine triphosphate from GTP and water; forms a homopolymer; GTP cyclohydrolase I 938913..939569 Aggregatibacter actinomycetemcomitans D11S-1 8536738 YP_003255626.1 CDS D11S_1020 NC_013416.1 939668 941110 R penicillin binding protein 4; penicillin sensitive; catalyzes the formation of D-alanine from D-alanyl-D-alanine; one of four, DD-carboxypeptidase low-molecular weight penicillin-binding proteins that remove terminal D-alanine from pentapeptide side chains; D-alanyl-D-alanine carboxypeptidase/endopeptidase complement(939668..941110) Aggregatibacter actinomycetemcomitans D11S-1 8536739 YP_003255627.1 CDS D11S_1021 NC_013416.1 941271 941747 D identified by Glimmer3; putative; transcription elongation factor GreA 941271..941747 Aggregatibacter actinomycetemcomitans D11S-1 8536740 YP_003255628.1 CDS D11S_1022 NC_013416.1 941822 942124 R identified by Glimmer3; putative; 23S rRNA methyltransferase J complement(941822..942124) Aggregatibacter actinomycetemcomitans D11S-1 8536741 YP_003255629.1 CDS D11S_1023 NC_013416.1 942292 942603 D identified by Glimmer3; putative; addiction module killer protein 942292..942603 Aggregatibacter actinomycetemcomitans D11S-1 8536742 YP_003255630.1 CDS D11S_1024 NC_013416.1 942588 942884 D identified by Glimmer3; putative; putative transcriptional regulator 942588..942884 Aggregatibacter actinomycetemcomitans D11S-1 8536743 YP_003255631.1 CDS D11S_1025 NC_013416.1 942917 943531 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(942917..943531) Aggregatibacter actinomycetemcomitans D11S-1 8536744 YP_003255632.1 CDS D11S_1026 NC_013416.1 943558 944955 D NorM; MdtK; functions as a Na(+)/drug antiporter; inactivation in Vibrio cholerae results in susceptibility to fluoroquinolones; multidrug efflux protein 943558..944955 Aggregatibacter actinomycetemcomitans D11S-1 8536745 YP_003255633.1 CDS D11S_1027 NC_013416.1 945260 945739 R identified by Glimmer3; putative; hypothetical protein complement(945260..945739) Aggregatibacter actinomycetemcomitans D11S-1 8536746 YP_003255634.1 CDS D11S_1028 NC_013416.1 945800 946771 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 945800..946771 Aggregatibacter actinomycetemcomitans D11S-1 8536747 YP_003255635.1 CDS D11S_1029 NC_013416.1 946827 947150 D identified by Glimmer3; putative; bicyclomycin/multidrug efflux system 946827..947150 Aggregatibacter actinomycetemcomitans D11S-1 8536748 YP_003255636.1 CDS D11S_1030 NC_013416.1 948369 948671 D identified by Glimmer3; putative; hypothetical protein 948369..948671 Aggregatibacter actinomycetemcomitans D11S-1 8536749 YP_003255637.1 CDS D11S_1031 NC_013416.1 948744 949481 D identified by Glimmer3; putative; type IV secretion system protein VirB4 948744..949481 Aggregatibacter actinomycetemcomitans D11S-1 8536750 YP_003255638.1 CDS D11S_1032 NC_013416.1 949672 951213 D identified by Glimmer3; putative; ATPase 949672..951213 Aggregatibacter actinomycetemcomitans D11S-1 8536751 YP_003255639.1 CDS D11S_1033 NC_013416.1 951308 951565 R identified by Glimmer3; putative; transposase complement(951308..951565) Aggregatibacter actinomycetemcomitans D11S-1 8536752 YP_003255640.1 CDS D11S_1034 NC_013416.1 951720 951986 R identified by Glimmer3; putative; putative DNA-binding protein (phage related) complement(951720..951986) Aggregatibacter actinomycetemcomitans D11S-1 8536753 YP_003255641.1 CDS D11S_1035 NC_013416.1 952107 952901 D identified by Glimmer3; putative; putative DNA-binding protein 952107..952901 Aggregatibacter actinomycetemcomitans D11S-1 8536754 YP_003255642.1 CDS D11S_1036 NC_013416.1 953196 953381 R identified by Glimmer3; putative; hypothetical protein complement(953196..953381) Aggregatibacter actinomycetemcomitans D11S-1 8536755 YP_003255643.1 CDS D11S_1037 NC_013416.1 953432 953671 D identified by Glimmer3; putative; NifC 953432..953671 Aggregatibacter actinomycetemcomitans D11S-1 8536756 YP_003255644.1 CDS D11S_1038 NC_013416.1 953674 953934 D identified by Glimmer3; putative; sulfate/thiosulfate import ATP-binding protein CysA 953674..953934 Aggregatibacter actinomycetemcomitans D11S-1 8536757 YP_003255645.1 CDS D11S_1039 NC_013416.1 953937 954284 D identified by Glimmer3; putative; sulfate/thiosulfate import ATP-binding protein CysA 953937..954284 Aggregatibacter actinomycetemcomitans D11S-1 8536758 YP_003255646.1 CDS D11S_1040 NC_013416.1 954281 955141 D involved in molybdenum transport; molybdenum transport protein ModD 954281..955141 Aggregatibacter actinomycetemcomitans D11S-1 8536759 YP_003255647.1 CDS D11S_1041 NC_013416.1 955214 955360 D identified by Glimmer3; putative; hypothetical protein 955214..955360 Aggregatibacter actinomycetemcomitans D11S-1 8536760 YP_003255648.1 CDS D11S_1042 NC_013416.1 955437 956885 D identified by Glimmer3; putative; TldD 955437..956885 Aggregatibacter actinomycetemcomitans D11S-1 8536761 YP_003255649.1 CDS D11S_1043 NC_013416.1 956936 962707 D identified by Glimmer3; putative; alpha-2-macroglobulin domain-containing protein 956936..962707 Aggregatibacter actinomycetemcomitans D11S-1 8536762 YP_003255650.1 CDS D11S_1044 NC_013416.1 962838 963887 D identified by Glimmer3; putative; phosphoenolpyruvate carboxylase 962838..963887 Aggregatibacter actinomycetemcomitans D11S-1 8536763 YP_003255651.1 CDS D11S_1045 NC_013416.1 964007 966364 D identified by Glimmer3; putative; penicillin-binding protein 1C 964007..966364 Aggregatibacter actinomycetemcomitans D11S-1 8536764 YP_003255652.1 CDS ulaD NC_013416.1 966474 967148 R catalyzes the formation of L-xylulose-5-phosphate from 3-keto-L-gulonate-6-phosphate in anaerobic L-ascorbate utilization; 3-keto-L-gulonate-6-phosphate decarboxylase complement(966474..967148) Aggregatibacter actinomycetemcomitans D11S-1 8536765 YP_003255653.1 CDS D11S_1047 NC_013416.1 967225 967686 R identified by Glimmer3; putative; PTS system ascorbate-specific transporter subunit IIA complement(967225..967686) Aggregatibacter actinomycetemcomitans D11S-1 8536766 YP_003255654.1 CDS D11S_1048 NC_013416.1 967741 969513 R identified by Glimmer3; putative; PTS system ascorbate-specific transporter subunits IICB complement(967741..969513) Aggregatibacter actinomycetemcomitans D11S-1 8536767 YP_003255655.1 CDS D11S_1049 NC_013416.1 969861 970952 D identified by Glimmer3; putative; putative L-ascorbate 6-phosphate lactonase 969861..970952 Aggregatibacter actinomycetemcomitans D11S-1 8536768 YP_003255656.1 CDS D11S_1050 NC_013416.1 971044 971793 D negative regulator of ulaG and ulaABCDEF; transcriptional repressor UlaR 971044..971793 Aggregatibacter actinomycetemcomitans D11S-1 8536769 YP_003255657.1 CDS D11S_1051 NC_013416.1 971834 972694 D L-xylulose 5-phosphate 3-epimerase activity not yet demonstrated; may be involved in the utilization of 2,3-diketo-L-gulonate; putative L-xylulose 5-phosphate 3-epimerase 971834..972694 Aggregatibacter actinomycetemcomitans D11S-1 8536770 YP_003255658.1 CDS sgbE NC_013416.1 972688 973383 D catalyzes the isomerization of L-ribulose 5-phosphate to D-xylulose 5-phosphate in the anaerobic catabolism of L-ascorbate; links the arabinose metabolic pathway to the pentose phosphate pathway and allows the bacteria to use arabinose as an energy source; L-ribulose-5-phosphate 4-epimerase 972688..973383 Aggregatibacter actinomycetemcomitans D11S-1 8536771 YP_003255659.1 CDS D11S_1053 NC_013416.1 973371 974681 R identified by Glimmer3; putative; tyrosine-specific transport protein 1 complement(973371..974681) Aggregatibacter actinomycetemcomitans D11S-1 8536772 YP_003255660.1 CDS D11S_1054 NC_013416.1 974795 974932 D identified by Glimmer3; putative; hypothetical protein 974795..974932 Aggregatibacter actinomycetemcomitans D11S-1 8536773 YP_003255661.1 CDS D11S_1055 NC_013416.1 974943 975170 D identified by Glimmer3; putative; LacZ protein 974943..975170 Aggregatibacter actinomycetemcomitans D11S-1 8536774 YP_003255662.1 CDS D11S_1056 NC_013416.1 975425 975688 R identified by Glimmer3; putative; glutaredoxin, GrxA family complement(975425..975688) Aggregatibacter actinomycetemcomitans D11S-1 8536775 YP_003255663.1 CDS D11S_1057 NC_013416.1 975815 976549 D NADPH-dependent; oxygen-insensitive; catalyzes the reduction of nitroaromatic compounds; nitroreductase A 975815..976549 Aggregatibacter actinomycetemcomitans D11S-1 8536776 YP_003255664.1 CDS D11S_1058 NC_013416.1 976640 977473 D identified by Glimmer3; putative; ribosomal protein S6 modification protein 976640..977473 Aggregatibacter actinomycetemcomitans D11S-1 8536777 YP_003255665.1 CDS D11S_1059 NC_013416.1 977526 977717 D identified by Glimmer3; putative; protein YcfP 977526..977717 Aggregatibacter actinomycetemcomitans D11S-1 8536778 YP_003255666.1 CDS D11S_1060 NC_013416.1 977769 978374 R identified by Glimmer3; putative; hypothetical protein complement(977769..978374) Aggregatibacter actinomycetemcomitans D11S-1 8536779 YP_003255667.1 CDS fumC NC_013416.1 978478 979872 R class II family (does not require metal); tetrameric enzyme; fumarase C; reversibly converts (S)-malate to fumarate and water; functions in the TCA cycle; fumarate hydratase complement(978478..979872) Aggregatibacter actinomycetemcomitans D11S-1 8536780 YP_003255668.1 CDS D11S_1062 NC_013416.1 980082 980531 D binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 980082..980531 Aggregatibacter actinomycetemcomitans D11S-1 8536781 YP_003255669.1 CDS D11S_1063 NC_013416.1 980570 980698 D identified by Glimmer3; putative; valyl-tRNA synthetase 980570..980698 Aggregatibacter actinomycetemcomitans D11S-1 8536782 YP_003255670.1 CDS D11S_1064 NC_013416.1 980726 980875 D identified by Glimmer3; putative; hypothetical protein 980726..980875 Aggregatibacter actinomycetemcomitans D11S-1 8536783 YP_003255671.1 CDS D11S_1065 NC_013416.1 981227 981490 D identified by Glimmer3; putative; adenylosuccinate synthetase 981227..981490 Aggregatibacter actinomycetemcomitans D11S-1 8536784 YP_003255672.1 CDS valS NC_013416.1 981574 984438 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 981574..984438 Aggregatibacter actinomycetemcomitans D11S-1 8536785 YP_003255673.1 CDS D11S_1067 NC_013416.1 984505 985398 D identified by Glimmer3; putative; hypothetical protein 984505..985398 Aggregatibacter actinomycetemcomitans D11S-1 8536786 YP_003255674.1 CDS D11S_1068 NC_013416.1 985517 985633 R identified by Glimmer3; putative; protein HipA complement(985517..985633) Aggregatibacter actinomycetemcomitans D11S-1 8536787 YP_003255675.1 CDS D11S_1069 NC_013416.1 985627 985965 R identified by Glimmer3; putative; protein HipA complement(985627..985965) Aggregatibacter actinomycetemcomitans D11S-1 8536788 YP_003255676.1 CDS D11S_1070 NC_013416.1 986015 986296 R identified by Glimmer3; putative; HTH-type transcriptional regulator HipB complement(986015..986296) Aggregatibacter actinomycetemcomitans D11S-1 8536789 YP_003255677.1 CDS D11S_1071 NC_013416.1 986440 987957 R identified by Glimmer3; putative; multidrug resistance protein B complement(986440..987957) Aggregatibacter actinomycetemcomitans D11S-1 8536790 YP_003255678.1 CDS D11S_1072 NC_013416.1 987967 988698 R identified by Glimmer3; putative; multidrug resistance protein A complement(987967..988698) Aggregatibacter actinomycetemcomitans D11S-1 8536791 YP_003255679.1 CDS D11S_1073 NC_013416.1 988763 989128 R identified by Glimmer3; putative; multidrug resistance protein A complement(988763..989128) Aggregatibacter actinomycetemcomitans D11S-1 8536792 YP_003255680.1 CDS D11S_1074 NC_013416.1 989337 989819 D identified by Glimmer3; putative; DNA protection during starvation protein 989337..989819 Aggregatibacter actinomycetemcomitans D11S-1 8536793 YP_003255681.1 CDS D11S_1075 NC_013416.1 989938 991917 R Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction; exoribonuclease II complement(989938..991917) Aggregatibacter actinomycetemcomitans D11S-1 8536794 YP_003255682.1 CDS D11S_1076 NC_013416.1 991990 992778 R identified by Glimmer3; putative; enoyl-[acyl-carrier-protein] reductase complement(991990..992778) Aggregatibacter actinomycetemcomitans D11S-1 8536795 YP_003255683.1 CDS D11S_1077 NC_013416.1 992869 993726 R identified by Glimmer3; putative; NIF3-like protein complement(992869..993726) Aggregatibacter actinomycetemcomitans D11S-1 8536796 YP_003255684.1 CDS D11S_1078 NC_013416.1 993849 994478 R identified by Glimmer3; putative; NrdG protein complement(993849..994478) Aggregatibacter actinomycetemcomitans D11S-1 8536797 YP_003255685.1 CDS D11S_1079 NC_013416.1 994484 994909 R identified by Glimmer3; putative; queuosine biosynthesis protein QueD complement(994484..994909) Aggregatibacter actinomycetemcomitans D11S-1 8536798 YP_003255686.1 CDS lysS NC_013416.1 995099 996607 R class II; LysRS2; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri, LysRS2 charges both tRNA molecules for lysine that exist in this organism and in addition can charge the tRNAPyl with lysine in the presence of LysRS1; lysyl-tRNA synthetase complement(995099..996607) Aggregatibacter actinomycetemcomitans D11S-1 8536799 YP_003255687.1 CDS D11S_1081 NC_013416.1 996664 997566 R identified by Glimmer3; putative; peptide chain release factor 2 complement(996664..997566) Aggregatibacter actinomycetemcomitans D11S-1 8536800 YP_003255688.1 CDS D11S_1082 NC_013416.1 997685 997846 R identified by Glimmer3; putative; peptide chain release factor 2 (RF-2) complement(997685..997846) Aggregatibacter actinomycetemcomitans D11S-1 8536801 YP_003255689.1 CDS D11S_1083 NC_013416.1 997930 998613 D identified by Glimmer3; putative; thiol:disulfide interchange protein DsbC 997930..998613 Aggregatibacter actinomycetemcomitans D11S-1 8536802 YP_003255690.1 CDS D11S_1084 NC_013416.1 998626 1000347 D identified by Glimmer3; putative; single-stranded-DNA-specific exonuclease RecJ 998626..1000347 Aggregatibacter actinomycetemcomitans D11S-1 8536803 YP_003255691.1 CDS D11S_1085 NC_013416.1 1000380 1001027 D identified by Glimmer3; putative; thiol-disulfide interchange protein 1000380..1001027 Aggregatibacter actinomycetemcomitans D11S-1 8536804 YP_003255692.1 CDS D11S_1086 NC_013416.1 1001044 1001736 D enables the cleavage of the glycosidic bond in both 5'-methylthioadenosine and S-adenosylhomocysteine; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1001044..1001736 Aggregatibacter actinomycetemcomitans D11S-1 8536805 YP_003255693.1 CDS D11S_1087 NC_013416.1 1001915 1002610 D identified by Glimmer3; putative; putative periplasmic binding protein CbiK 1001915..1002610 Aggregatibacter actinomycetemcomitans D11S-1 8536806 YP_003255694.1 CDS D11S_1088 NC_013416.1 1002617 1003120 D identified by Glimmer3; putative; 50S ribosomal protein L25 1002617..1003120 Aggregatibacter actinomycetemcomitans D11S-1 8536807 YP_003255695.1 CDS D11S_1089 NC_013416.1 1003120 1003773 D catalyzes the ATP-dependent transport of cobalt; cobalt transport protein CbiM 1003120..1003773 Aggregatibacter actinomycetemcomitans D11S-1 8536808 YP_003255696.1 CDS D11S_1090 NC_013416.1 1003770 1004435 D identified by Glimmer3; putative; cobalt membrane transport protein CbiQ 1003770..1004435 Aggregatibacter actinomycetemcomitans D11S-1 8536809 YP_003255697.1 CDS D11S_1091 NC_013416.1 1004432 1005055 D identified by Glimmer3; putative; cobalt transport ATP-binding protein CbiO 1004432..1005055 Aggregatibacter actinomycetemcomitans D11S-1 8536810 YP_003255698.1 CDS D11S_1092 NC_013416.1 1005134 1005943 D GTP hydrolase involved in nickel liganding into hydrogenases; hydrogenase nickel incorporation protein HypB 1005134..1005943 Aggregatibacter actinomycetemcomitans D11S-1 8536811 YP_003255699.1 CDS D11S_1093 NC_013416.1 1005970 1007082 D identified by Glimmer3; putative; hydrogenase expression/formation protein HypD 1005970..1007082 Aggregatibacter actinomycetemcomitans D11S-1 8536812 YP_003255700.1 CDS D11S_1094 NC_013416.1 1007082 1008095 D identified by Glimmer3; putative; hydrogenase expression/formation protein HypE 1007082..1008095 Aggregatibacter actinomycetemcomitans D11S-1 8536813 YP_003255701.1 CDS D11S_1095 NC_013416.1 1008117 1008269 D identified by Glimmer3; putative; hypothetical protein 1008117..1008269 Aggregatibacter actinomycetemcomitans D11S-1 8536814 YP_003255702.1 CDS D11S_1096 NC_013416.1 1010059 1010874 R catalyzes the conversion of shikimate to 3-dehydroshikimate; shikimate 5-dehydrogenase complement(1010059..1010874) Aggregatibacter actinomycetemcomitans D11S-1 8536815 YP_003255703.1 CDS metF NC_013416.1 1011024 1011908 R MTHFR; catalyzes NADH-linked reduction of 5,10-methylenetetrahydrofolate to 5-methyltetrahydrofolate using FAD as a cofactor; 5,10-methylenetetrahydrofolate reductase complement(1011024..1011908) Aggregatibacter actinomycetemcomitans D11S-1 8536816 YP_003255704.1 CDS D11S_1098 NC_013416.1 1012083 1013150 R identified by Glimmer3; putative; permease complement(1012083..1013150) Aggregatibacter actinomycetemcomitans D11S-1 8536817 YP_003255705.1 CDS D11S_1099 NC_013416.1 1013155 1014273 R identified by Glimmer3; putative; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase complement(1013155..1014273) Aggregatibacter actinomycetemcomitans D11S-1 8536818 YP_003255706.1 CDS D11S_1100 NC_013416.1 1014410 1015900 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1014410..1015900 Aggregatibacter actinomycetemcomitans D11S-1 8536819 YP_003255707.1 CDS modC NC_013416.1 1016045 1017106 R Part of the ABC transporter complex modABC involved in molybdenum import; molybdate transporter ATP-binding protein complement(1016045..1017106) Aggregatibacter actinomycetemcomitans D11S-1 8536820 YP_003255708.1 CDS modB NC_013416.1 1017093 1017821 R part of ModCBA molybdate transporter; member of ABC superfamily; inner membrane component; regulated by repressor protein ModE; molybdate ABC transporter permease complement(1017093..1017821) Aggregatibacter actinomycetemcomitans D11S-1 8536821 YP_003255709.1 CDS D11S_1103 NC_013416.1 1017899 1018663 R identified by Glimmer3; putative; molybdate ABC transporter periplasmic molybdate-binding protein complement(1017899..1018663) Aggregatibacter actinomycetemcomitans D11S-1 8536822 YP_003255710.1 CDS D11S_1104 NC_013416.1 1018890 1019669 D identified by Glimmer3; putative; ModE 1018890..1019669 Aggregatibacter actinomycetemcomitans D11S-1 8536823 YP_003255711.1 CDS D11S_1105 NC_013416.1 1019890 1021233 D identified by Glimmer3; putative; CitT protein 1019890..1021233 Aggregatibacter actinomycetemcomitans D11S-1 8536824 YP_003255712.1 CDS D11S_1106 NC_013416.1 1021300 1021896 R identified by Glimmer3; putative; hypothetical protein complement(1021300..1021896) Aggregatibacter actinomycetemcomitans D11S-1 8536825 YP_003255713.1 CDS D11S_1107 NC_013416.1 1021905 1022933 R identified by Glimmer3; putative; periplasmic serine peptidase DegS complement(1021905..1022933) Aggregatibacter actinomycetemcomitans D11S-1 8536826 YP_003255714.1 CDS D11S_1108 NC_013416.1 1022942 1024066 R identified by Glimmer3; putative; riboflavin biosynthesis protein RibD complement(1022942..1024066) Aggregatibacter actinomycetemcomitans D11S-1 8536827 YP_003255715.1 CDS nrdR NC_013416.1 1024066 1024518 R identified by Glimmer3; putative; transcriptional regulator NrdR complement(1024066..1024518) Aggregatibacter actinomycetemcomitans D11S-1 8536828 YP_003255716.1 CDS D11S_1110 NC_013416.1 1024635 1025696 R identified by Glimmer3; putative; putative RNA 2'-O-ribose methyltransferase complement(1024635..1025696) Aggregatibacter actinomycetemcomitans D11S-1 8536829 YP_003255717.1 CDS D11S_1111 NC_013416.1 1025716 1026621 R Glycine cleavage system transcriptional activator; activates the gcvTHP operon in the presence of glycine and represses the operon in its absence; DNA-binding transcriptional activator GcvA complement(1025716..1026621) Aggregatibacter actinomycetemcomitans D11S-1 8536830 YP_003255718.1 CDS D11S_1112 NC_013416.1 1027083 1028102 D catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase 1027083..1028102 Aggregatibacter actinomycetemcomitans D11S-1 8536831 YP_003255719.1 CDS D11S_1113 NC_013416.1 1028470 1029210 D identified by Glimmer3; putative; hypothetical protein 1028470..1029210 Aggregatibacter actinomycetemcomitans D11S-1 8536832 YP_003255720.1 CDS D11S_1114 NC_013416.1 1029366 1030301 R oxidizes malate to oxaloacetate; malate dehydrogenase complement(1029366..1030301) Aggregatibacter actinomycetemcomitans D11S-1 8536833 YP_003255721.1 CDS D11S_1115 NC_013416.1 1030557 1031024 D identified by Glimmer3; putative; arginine repressor 1030557..1031024 Aggregatibacter actinomycetemcomitans D11S-1 8536834 YP_003255722.1 CDS D11S_1116 NC_013416.1 1031048 1031935 D identified by Glimmer3; putative; hypothetical protein 1031048..1031935 Aggregatibacter actinomycetemcomitans D11S-1 8536835 YP_003255723.1 CDS D11S_1117 NC_013416.1 1032126 1032707 D identified by Glimmer3; putative; Na(+)-translocating NADH-quinone reductase subunit E 1032126..1032707 Aggregatibacter actinomycetemcomitans D11S-1 8536836 YP_003255724.1 CDS D11S_1118 NC_013416.1 1032707 1033297 D part of membrane-bound complex thought to be involved in electron transport to nitrogen; electron transport complex protein RnfB 1032707..1033297 Aggregatibacter actinomycetemcomitans D11S-1 8536837 YP_003255725.1 CDS D11S_1119 NC_013416.1 1033298 1035535 D identified by Glimmer3; putative; electron transport complex protein RnfC 1033298..1035535 Aggregatibacter actinomycetemcomitans D11S-1 8536838 YP_003255726.1 CDS rnfD NC_013416.1 1035546 1036625 D RnfD; RsxD; required for nitrogen fixation in Rhodobacter capsulatus; part of a membrane-bound complex thought to be involved in electron transport to nitrogenase; in Escherichia coli this gene is part of a cluster controlling SoxR-mediated induction of the SoxS transcription factor in the absence of oxidizing agents; electron transport complex protein RnfD 1035546..1036625 Aggregatibacter actinomycetemcomitans D11S-1 8536839 YP_003255727.1 CDS D11S_1121 NC_013416.1 1036632 1037252 D identified by Glimmer3; putative; electron transport complex protein RnfG 1036632..1037252 Aggregatibacter actinomycetemcomitans D11S-1 8536840 YP_003255728.1 CDS D11S_1122 NC_013416.1 1037245 1038030 D identified by Glimmer3; putative; electron transport complex protein RnfE 1037245..1038030 Aggregatibacter actinomycetemcomitans D11S-1 8536841 YP_003255729.1 CDS D11S_1123 NC_013416.1 1038177 1038812 D identified by Glimmer3; putative; endonuclease III 1038177..1038812 Aggregatibacter actinomycetemcomitans D11S-1 8536842 YP_003255730.1 CDS D11S_1124 NC_013416.1 1038837 1040204 D identified by Glimmer3; putative; SoxR-reducing system protein RsxE 1038837..1040204 Aggregatibacter actinomycetemcomitans D11S-1 8536843 YP_003255731.1 CDS D11S_1125 NC_013416.1 1040599 1041384 R identified by Glimmer3; putative; high-affinity zinc uptake system membrane protein ZnuB complement(1040599..1041384) Aggregatibacter actinomycetemcomitans D11S-1 8536844 YP_003255732.1 CDS D11S_1126 NC_013416.1 1041396 1042169 R identified by Glimmer3; putative; zinc import ATP-binding protein ZnuC complement(1041396..1042169) Aggregatibacter actinomycetemcomitans D11S-1 8536845 YP_003255733.1 CDS D11S_1127 NC_013416.1 1042358 1043890 D identified by Glimmer3; putative; NlpD protein 1042358..1043890 Aggregatibacter actinomycetemcomitans D11S-1 8536846 YP_003255734.1 CDS D11S_1128 NC_013416.1 1043998 1044756 R identified by Glimmer3; putative; iron(III) dicitrate transport ATP-binding protein FecE complement(1043998..1044756) Aggregatibacter actinomycetemcomitans D11S-1 8536847 YP_003255735.1 CDS D11S_1129 NC_013416.1 1044768 1045691 R identified by Glimmer3; putative; iron(III) transport system permease complement(1044768..1045691) Aggregatibacter actinomycetemcomitans D11S-1 8536848 YP_003255736.1 CDS D11S_1130 NC_013416.1 1045699 1046664 R identified by Glimmer3; putative; ABC transport system permease complement(1045699..1046664) Aggregatibacter actinomycetemcomitans D11S-1 8536849 YP_003255737.1 CDS D11S_1131 NC_013416.1 1046724 1047623 R identified by Glimmer3; putative; ABC transport system periplasmic protein complement(1046724..1047623) Aggregatibacter actinomycetemcomitans D11S-1 8536850 YP_003255738.1 CDS cpdB NC_013416.1 1047830 1049806 D periplasmic enzyme; functions during ribonucleic acid degradation; 2',3'-cyclic nucleotides are first converted to 3'-nucleotide and then cleaved to yield a ribonucleotide and a phosphate; bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic protein 1047830..1049806 Aggregatibacter actinomycetemcomitans D11S-1 8536851 YP_003255739.1 CDS D11S_1133 NC_013416.1 1049880 1050740 R identified by Glimmer3; putative; formate dehydrogenase accessory protein FdhE complement(1049880..1050740) Aggregatibacter actinomycetemcomitans D11S-1 8536852 YP_003255740.1 CDS D11S_1134 NC_013416.1 1050906 1051040 R identified by Glimmer3; putative; hypothetical protein complement(1050906..1051040) Aggregatibacter actinomycetemcomitans D11S-1 8536853 YP_003255741.1 CDS D11S_1135 NC_013416.1 1051165 1051581 D identified by Glimmer3; putative; protein YgiW 1051165..1051581 Aggregatibacter actinomycetemcomitans D11S-1 8536854 YP_003255742.1 CDS D11S_1136 NC_013416.1 1051719 1052390 D identified by Glimmer3; putative; transcriptional regulatory protein QseB 1051719..1052390 Aggregatibacter actinomycetemcomitans D11S-1 8536855 YP_003255743.1 CDS D11S_1137 NC_013416.1 1052377 1053753 D identified by Glimmer3; putative; sensor protein QseC 1052377..1053753 Aggregatibacter actinomycetemcomitans D11S-1 8536856 YP_003255744.1 CDS D11S_1138 NC_013416.1 1053879 1055648 R identified by Glimmer3; putative; hypothetical protein complement(1053879..1055648) Aggregatibacter actinomycetemcomitans D11S-1 8536857 YP_003255745.1 CDS D11S_1139 NC_013416.1 1055881 1056126 R identified by Glimmer3; putative; hypothetical protein complement(1055881..1056126) Aggregatibacter actinomycetemcomitans D11S-1 8536858 YP_003255746.1 CDS D11S_1140 NC_013416.1 1056320 1057657 R catalyzes the formation of arginosuccinate from citrulline and aspartate in arginine biosynthesis; argininosuccinate synthase complement(1056320..1057657) Aggregatibacter actinomycetemcomitans D11S-1 8536859 YP_003255747.1 CDS D11S_1141 NC_013416.1 1057752 1058579 R identified by Glimmer3; putative; WcaG protein complement(1057752..1058579) Aggregatibacter actinomycetemcomitans D11S-1 8536860 YP_003255748.1 CDS D11S_1142 NC_013416.1 1058750 1058866 R identified by Glimmer3; putative; hypothetical protein complement(1058750..1058866) Aggregatibacter actinomycetemcomitans D11S-1 8536861 YP_003255749.1 CDS prfC NC_013416.1 1058936 1060519 D stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 1058936..1060519 Aggregatibacter actinomycetemcomitans D11S-1 8536862 YP_003255750.1 CDS D11S_1144 NC_013416.1 1060706 1061056 D identified by Glimmer3; putative; hypothetical protein 1060706..1061056 Aggregatibacter actinomycetemcomitans D11S-1 8536863 YP_003255751.1 CDS D11S_1145 NC_013416.1 1061053 1061352 D identified by Glimmer3; putative; putative transcriptional regulator 1061053..1061352 Aggregatibacter actinomycetemcomitans D11S-1 8536864 YP_003255752.1 CDS D11S_1146 NC_013416.1 1061388 1064321 R catalyzes the ATP-dependent addition of AMP to a subunit of glutamine synthetase; also catalyzes the reverse reaction - deadenylation; adenylation/deadenylation of glutamine synthetase subunits is important for the regulation of this enzyme; bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase complement(1061388..1064321) Aggregatibacter actinomycetemcomitans D11S-1 8536865 YP_003255753.1 CDS D11S_1147 NC_013416.1 1064743 1067049 D identified by Glimmer3; putative; CRISPR-associated helicase Cas3 1064743..1067049 Aggregatibacter actinomycetemcomitans D11S-1 8536866 YP_003255754.1 CDS D11S_1148 NC_013416.1 1067555 1068061 D identified by Glimmer3; putative; CRISPR-associated protein Cas4 1067555..1068061 Aggregatibacter actinomycetemcomitans D11S-1 8536867 YP_003255755.1 CDS D11S_1149 NC_013416.1 1068051 1069805 D identified by Glimmer3; putative; ATP-dependent OLD family endonuclease 1068051..1069805 Aggregatibacter actinomycetemcomitans D11S-1 8536868 YP_003255756.1 CDS D11S_1150 NC_013416.1 1069859 1070872 D identified by Glimmer3; putative; CRISPR-associated protein Cas1 1069859..1070872 Aggregatibacter actinomycetemcomitans D11S-1 8536869 YP_003255757.1 CDS D11S_1151 NC_013416.1 1070876 1071169 D identified by Glimmer3; putative; CRISPR-associated protein Cas2 1070876..1071169 Aggregatibacter actinomycetemcomitans D11S-1 8536870 YP_003255758.1 CDS D11S_1152 NC_013416.1 1071794 1072174 D identified by Glimmer3; putative; phosphomethylpyrimidine kinase 1071794..1072174 Aggregatibacter actinomycetemcomitans D11S-1 8536871 YP_003255759.1 CDS D11S_1153 NC_013416.1 1072196 1073200 D identified by Glimmer3; putative; thiamin/thiamin pyrophosphate ABC transporter 1072196..1073200 Aggregatibacter actinomycetemcomitans D11S-1 8536872 YP_003255760.1 CDS thiP NC_013416.1 1073266 1074837 D permease; with TbpA and ThiQ functions in transport of thiamine and thiamine pyrophosphate into the cell; repressed in presence of exogenous thiamine; thiamine transporter membrane protein 1073266..1074837 Aggregatibacter actinomycetemcomitans D11S-1 8536873 YP_003255761.1 CDS D11S_1155 NC_013416.1 1074821 1075468 D identified by Glimmer3; putative; thiamine ABC transporter ATP-binding protein 1074821..1075468 Aggregatibacter actinomycetemcomitans D11S-1 8536874 YP_003255762.1 CDS D11S_1156 NC_013416.1 1075513 1076517 D identified by Glimmer3; putative; biotin synthase 1075513..1076517 Aggregatibacter actinomycetemcomitans D11S-1 8536875 YP_003255763.1 CDS D11S_1157 NC_013416.1 1076615 1077997 R identified by Glimmer3; putative; protease DegQ complement(1076615..1077997) Aggregatibacter actinomycetemcomitans D11S-1 8536876 YP_003255764.1 CDS D11S_1158 NC_013416.1 1078060 1078230 D identified by Glimmer3; putative; hypothetical protein 1078060..1078230 Aggregatibacter actinomycetemcomitans D11S-1 8536877 YP_003255765.1 CDS D11S_1159 NC_013416.1 1078188 1078598 R identified by Glimmer3; putative; hypothetical protein complement(1078188..1078598) Aggregatibacter actinomycetemcomitans D11S-1 8536878 YP_003255766.1 CDS D11S_1160 NC_013416.1 1078768 1080531 R identified by Glimmer3; putative; protein YcaO complement(1078768..1080531) Aggregatibacter actinomycetemcomitans D11S-1 8536879 YP_003255767.1 CDS D11S_1161 NC_013416.1 1080622 1081827 R identified by Glimmer3; putative; mannose-6-phosphate isomerase, class I complement(1080622..1081827) Aggregatibacter actinomycetemcomitans D11S-1 8536880 YP_003255768.1 CDS D11S_1162 NC_013416.1 1082003 1082341 D identified by Glimmer3; putative; protein YegP 1082003..1082341 Aggregatibacter actinomycetemcomitans D11S-1 8536881 YP_003255769.1 CDS D11S_1163 NC_013416.1 1082530 1084023 D identified by Glimmer3; putative; PTS system maltose and glucose-specific transporter subunit IIBC 1082530..1084023 Aggregatibacter actinomycetemcomitans D11S-1 8536882 YP_003255770.1 CDS D11S_1164 NC_013416.1 1084081 1084779 R identified by Glimmer3; putative; SmtA protein complement(1084081..1084779) Aggregatibacter actinomycetemcomitans D11S-1 8536883 YP_003255771.1 CDS D11S_1165 NC_013416.1 1084800 1085501 D identified by Glimmer3; putative; hydroxyacylglutathione hydrolase 1084800..1085501 Aggregatibacter actinomycetemcomitans D11S-1 8536884 YP_003255772.1 CDS hemA NC_013416.1 1085686 1086990 D catalyzes the formation of glutamate-1-semialdehyde from glutamyl-tRNA(Glu) and NADPH; the second step of the pathway is catalyzed by glutamate-1-semialdehyde aminomutase which results in the formation of 5-aminolevulinic acid; functions in porphyrin (tetrapyrroles) biosynthesis; the crystal structure showed a C-terminal dimerization domain that appears to be absent in Chlamydial proteins; glutamyl-tRNA reductase 1085686..1086990 Aggregatibacter actinomycetemcomitans D11S-1 8536885 YP_003255773.1 CDS D11S_1167 NC_013416.1 1087052 1088275 D identified by Glimmer3; putative; protein mlc 1087052..1088275 Aggregatibacter actinomycetemcomitans D11S-1 8536886 YP_003255774.1 CDS adk NC_013416.1 1089012 1089656 R essential enzyme that recycles AMP in active cells; converts ATP and AMP to two molecules of ADP; adenylate kinase complement(1089012..1089656) Aggregatibacter actinomycetemcomitans D11S-1 8536891 YP_003255775.1 CDS D11S_1173 NC_013416.1 1089789 1091078 R identified by Glimmer3; putative; AmpG protein complement(1089789..1091078) Aggregatibacter actinomycetemcomitans D11S-1 8536892 YP_003255776.1 CDS D11S_1174 NC_013416.1 1091085 1091426 R identified by Glimmer3; putative; hydrogenase nickel insertion protein HypA complement(1091085..1091426) Aggregatibacter actinomycetemcomitans D11S-1 8536893 YP_003255777.1 CDS D11S_1175 NC_013416.1 1091432 1092448 R identified by Glimmer3; putative; UDP-glucose 4-epimerase complement(1091432..1092448) Aggregatibacter actinomycetemcomitans D11S-1 8536894 YP_003255778.1 CDS D11S_1176 NC_013416.1 1092642 1093028 D identified by Glimmer3; putative; aminopeptidase C 1092642..1093028 Aggregatibacter actinomycetemcomitans D11S-1 8536895 YP_003255779.1 CDS D11S_1177 NC_013416.1 1093153 1094094 D identified by Glimmer3; putative; cystathionine beta-lyase 1093153..1094094 Aggregatibacter actinomycetemcomitans D11S-1 8536896 YP_003255780.1 CDS D11S_1178 NC_013416.1 1094048 1094173 D identified by Glimmer3; putative; uridine kinase 1094048..1094173 Aggregatibacter actinomycetemcomitans D11S-1 8536897 YP_003255781.1 CDS D11S_1179 NC_013416.1 1094201 1095547 R identified by Glimmer3; putative; tRNA(Ile)-lysidine synthase complement(1094201..1095547) Aggregatibacter actinomycetemcomitans D11S-1 8536898 YP_003255782.1 CDS D11S_1180 NC_013416.1 1095579 1096436 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxal; pyridoxamine kinase complement(1095579..1096436) Aggregatibacter actinomycetemcomitans D11S-1 8536899 YP_003255783.1 CDS D11S_1181 NC_013416.1 1096499 1097452 R catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer composed of two alpha (AccA) and two beta (AccD) subunits; one of the two catalytic subunits that can form the acetyl CoA carboxylase enzyme together with a carrier protein; acetyl-CoA carboxylase carboxyltransferase subunit alpha complement(1096499..1097452) Aggregatibacter actinomycetemcomitans D11S-1 8536900 YP_003255784.1 CDS D11S_1182 NC_013416.1 1099234 1100184 D identified by Glimmer3; putative; hypothetical protein 1099234..1100184 Aggregatibacter actinomycetemcomitans D11S-1 8536901 YP_003255785.1 CDS D11S_1183 NC_013416.1 1100685 1100861 R identified by Glimmer3; putative; hypothetical protein complement(1100685..1100861) Aggregatibacter actinomycetemcomitans D11S-1 8536902 YP_003255786.1 CDS D11S_1184 NC_013416.1 1101490 1101714 R identified by Glimmer3; putative; hypothetical protein complement(1101490..1101714) Aggregatibacter actinomycetemcomitans D11S-1 8536903 YP_003255787.1 CDS D11S_1185 NC_013416.1 1101779 1102135 R identified by Glimmer3; putative; hypothetical protein complement(1101779..1102135) Aggregatibacter actinomycetemcomitans D11S-1 8536904 YP_003255788.1 CDS D11S_1186 NC_013416.1 1102219 1102578 D identified by Glimmer3; putative; hypothetical protein 1102219..1102578 Aggregatibacter actinomycetemcomitans D11S-1 8536905 YP_003255789.1 CDS D11S_1187 NC_013416.1 1102604 1103023 R identified by Glimmer3; putative; putative bacteriophage protein transcription regulator complement(1102604..1103023) Aggregatibacter actinomycetemcomitans D11S-1 8536906 YP_003255790.1 CDS D11S_1188 NC_013416.1 1103510 1104661 D identified by Glimmer3; putative; hypothetical protein 1103510..1104661 Aggregatibacter actinomycetemcomitans D11S-1 8536907 YP_003255791.1 CDS D11S_1189 NC_013416.1 1104633 1104761 D identified by Glimmer3; putative; hypothetical protein 1104633..1104761 Aggregatibacter actinomycetemcomitans D11S-1 8536908 YP_003255792.1 CDS D11S_1190 NC_013416.1 1104972 1106210 D identified by Glimmer3; putative; putative antirepressor protein 1104972..1106210 Aggregatibacter actinomycetemcomitans D11S-1 8536909 YP_003255793.1 CDS D11S_1191 NC_013416.1 1106210 1106821 D identified by Glimmer3; putative; putative tail fiber assembly protein 1106210..1106821 Aggregatibacter actinomycetemcomitans D11S-1 8536910 YP_003255794.1 CDS D11S_1192 NC_013416.1 1106818 1107576 R identified by Glimmer3; putative; putative integrase complement(1106818..1107576) Aggregatibacter actinomycetemcomitans D11S-1 8536911 YP_003255795.1 CDS guaA NC_013416.1 1107757 1109316 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(1107757..1109316) Aggregatibacter actinomycetemcomitans D11S-1 8536912 YP_003255796.1 CDS D11S_1194 NC_013416.1 1109348 1109614 R identified by Glimmer3; putative; addiction module antitoxin complement(1109348..1109614) Aggregatibacter actinomycetemcomitans D11S-1 8536913 YP_003255797.1 CDS D11S_1195 NC_013416.1 1109626 1109898 R identified by Glimmer3; putative; putative RelB protein complement(1109626..1109898) Aggregatibacter actinomycetemcomitans D11S-1 8536914 YP_003255798.1 CDS D11S_1196 NC_013416.1 1109938 1110123 R identified by Glimmer3; putative; hypothetical protein complement(1109938..1110123) Aggregatibacter actinomycetemcomitans D11S-1 8536915 YP_003255799.1 CDS dcuC NC_013416.1 1110153 1111505 R responsible for the transport of C4-dicarboxylates during anaerobic growth; C4-dicarboxylate transporter DcuC complement(1110153..1111505) Aggregatibacter actinomycetemcomitans D11S-1 8536916 YP_003255800.1 CDS D11S_1199 NC_013416.1 1111944 1112399 D in Streptococcus pneumoniae this gene was found to be essential; structure determination of the Streptococcus protein shows that it is similar to a number of other proteins; hypothetical protein 1111944..1112399 Aggregatibacter actinomycetemcomitans D11S-1 8536918 YP_003255801.1 CDS nusA NC_013416.1 1112423 1113919 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 1112423..1113919 Aggregatibacter actinomycetemcomitans D11S-1 8536919 YP_003255802.1 CDS infB NC_013416.1 1113935 1116424 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 1113935..1116424 Aggregatibacter actinomycetemcomitans D11S-1 8536920 YP_003255803.1 CDS rbfA NC_013416.1 1116956 1117342 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 1116956..1117342 Aggregatibacter actinomycetemcomitans D11S-1 8536921 YP_003255804.1 CDS truB NC_013416.1 1117342 1118259 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 1117342..1118259 Aggregatibacter actinomycetemcomitans D11S-1 8536922 YP_003255805.1 CDS D11S_1204 NC_013416.1 1118301 1118453 R identified by Glimmer3; putative; hypothetical protein complement(1118301..1118453) Aggregatibacter actinomycetemcomitans D11S-1 8536923 YP_003255806.1 CDS D11S_1205 NC_013416.1 1118656 1119159 R identified by Glimmer3; putative; hypothetical protein complement(1118656..1119159) Aggregatibacter actinomycetemcomitans D11S-1 8536924 YP_003255807.1 CDS D11S_1206 NC_013416.1 1119286 1120473 R catalyzes the formation of tyrosyl-tRNA(Tyr) from tyrosine and tRNA(Tyr); tyrosyl-tRNA synthetase complement(1119286..1120473) Aggregatibacter actinomycetemcomitans D11S-1 8536925 YP_003255808.1 CDS D11S_1207 NC_013416.1 1120721 1121446 R Regulatory factor involved in maltose metabolism; sugar fermentation stimulation protein A complement(1120721..1121446) Aggregatibacter actinomycetemcomitans D11S-1 8536926 YP_003255809.1 CDS pntA NC_013416.1 1121741 1123276 D forms a tetramer composed of 2 alpha subunits and 2 beta subunits in the inner membrane; involved in catalyzing transfer of hydride ion equivalents between NAD and NADP; stereospecific (AB-specific); functions as a proton pump by translocating protons from cytoplasm to periplasm; NAD(P) transhydrogenase subunit alpha 1121741..1123276 Aggregatibacter actinomycetemcomitans D11S-1 8536927 YP_003255810.1 CDS pntB NC_013416.1 1123287 1124711 D catalyzes reversible transfer of hydride ion equivalent between NAD and NADP; membrane-bound proton pump that translocates protons from cytosolic to periplasmic side of the inner membrane; forms a tetramer composed of two alpha and 2 beta subunits; AB-stereospecific enzyme; pyridine nucleotide transhydrogenase 1123287..1124711 Aggregatibacter actinomycetemcomitans D11S-1 8536928 YP_003255811.1 CDS D11S_1210 NC_013416.1 1124892 1125134 D identified by Glimmer3; putative; putative DNA repair ATPase 1124892..1125134 Aggregatibacter actinomycetemcomitans D11S-1 8536929 YP_003255812.1 CDS D11S_1211 NC_013416.1 1125105 1125266 R identified by Glimmer3; putative; hypothetical protein complement(1125105..1125266) Aggregatibacter actinomycetemcomitans D11S-1 8536930 YP_003255813.1 CDS D11S_1212 NC_013416.1 1125735 1126583 D identified by Glimmer3; putative; filamentation induced by cAMP protein Fic-like protein 1125735..1126583 Aggregatibacter actinomycetemcomitans D11S-1 8536931 YP_003255814.1 CDS D11S_1213 NC_013416.1 1127125 1128204 D identified by Glimmer3; putative; selenide, water dikinase 1127125..1128204 Aggregatibacter actinomycetemcomitans D11S-1 8536932 YP_003255815.1 CDS D11S_1214 NC_013416.1 1128442 1129512 D identified by Glimmer3; putative; spermidine/putrescine import ATP-binding protein PotA 1128442..1129512 Aggregatibacter actinomycetemcomitans D11S-1 8536933 YP_003255816.1 CDS D11S_1215 NC_013416.1 1129509 1130378 D identified by Glimmer3; putative; PotB protein 1129509..1130378 Aggregatibacter actinomycetemcomitans D11S-1 8536934 YP_003255817.1 CDS D11S_1216 NC_013416.1 1130375 1131223 D identified by Glimmer3; putative; PotC protein 1130375..1131223 Aggregatibacter actinomycetemcomitans D11S-1 8536935 YP_003255818.1 CDS D11S_1217 NC_013416.1 1131243 1132334 D identified by Glimmer3; putative; PotD protein 1131243..1132334 Aggregatibacter actinomycetemcomitans D11S-1 8536936 YP_003255819.1 CDS uvrC NC_013416.1 1132719 1134548 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C complement(1132719..1134548) Aggregatibacter actinomycetemcomitans D11S-1 8536937 YP_003255820.1 CDS D11S_1219 NC_013416.1 1134687 1135460 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(1134687..1135460) Aggregatibacter actinomycetemcomitans D11S-1 8536938 YP_003255821.1 CDS D11S_1220 NC_013416.1 1135462 1135641 R identified by Glimmer3; putative; hypothetical protein complement(1135462..1135641) Aggregatibacter actinomycetemcomitans D11S-1 8536939 YP_003255822.1 CDS D11S_1221 NC_013416.1 1135663 1136637 R identified by Glimmer3; putative; tetraacyldisaccharide 4'-kinase complement(1135663..1136637) Aggregatibacter actinomycetemcomitans D11S-1 8536940 YP_003255823.1 CDS D11S_1222 NC_013416.1 1136656 1138404 R involved in the transport of lipid A across the inner membrane; lipid transporter ATP-binding/permease complement(1136656..1138404) Aggregatibacter actinomycetemcomitans D11S-1 8536941 YP_003255824.1 CDS D11S_1223 NC_013416.1 1138451 1140685 R identified by Glimmer3; putative; DNA internalization-related competence protein ComEC/Rec2 complement(1138451..1140685) Aggregatibacter actinomycetemcomitans D11S-1 8536942 YP_003255825.1 CDS D11S_1224 NC_013416.1 1141178 1141615 D identified by Glimmer3; putative; RNA polymerase-binding protein DksA 1141178..1141615 Aggregatibacter actinomycetemcomitans D11S-1 8536943 YP_003255826.1 CDS D11S_1225 NC_013416.1 1141899 1143677 D identified by Glimmer3; putative; poly(A) polymerase 1141899..1143677 Aggregatibacter actinomycetemcomitans D11S-1 8536944 YP_003255827.1 CDS D11S_1226 NC_013416.1 1143748 1144110 R identified by Glimmer3; putative; hypothetical protein complement(1143748..1144110) Aggregatibacter actinomycetemcomitans D11S-1 8536945 YP_003255828.1 CDS D11S_1227 NC_013416.1 1144457 1146592 R catalyzes the synthesis of acetylphosphate or propionylphosphate from acetyl-CoA or propionyl-CoA and inorganic phosphate; when using propionyl-CoA the enzyme is functioning in the anaerobic pathway catabolizing threonine to propionate; phosphate acetyltransferase complement(1144457..1146592) Aggregatibacter actinomycetemcomitans D11S-1 8536946 YP_003255829.1 CDS D11S_1228 NC_013416.1 1146662 1147864 R AckA utilizes acetate and can acetylate CheY which increases signal strength during flagellar rotation; utilizes magnesium and ATP; also involved in conversion of acetate to aceyl-CoA; acetate kinase complement(1146662..1147864) Aggregatibacter actinomycetemcomitans D11S-1 8536947 YP_003255830.1 CDS D11S_1229 NC_013416.1 1148132 1148575 D identified by Glimmer3; putative; hypothetical protein 1148132..1148575 Aggregatibacter actinomycetemcomitans D11S-1 8536948 YP_003255831.1 CDS D11S_1230 NC_013416.1 1148754 1149296 D identified by Glimmer3; putative; CvpA family protein 1148754..1149296 Aggregatibacter actinomycetemcomitans D11S-1 8536949 YP_003255832.1 CDS D11S_1231 NC_013416.1 1149293 1149418 R identified by Glimmer3; putative; hypothetical protein complement(1149293..1149418) Aggregatibacter actinomycetemcomitans D11S-1 8536950 YP_003255833.1 CDS malQ NC_013416.1 1149440 1151515 R amylomaltase; acts to release glucose from maltodextrins; 4-alpha-glucanotransferase complement(1149440..1151515) Aggregatibacter actinomycetemcomitans D11S-1 8536951 YP_003255834.1 CDS D11S_1233 NC_013416.1 1151618 1154008 R identified by Glimmer3; putative; maltodextrin phosphorylase complement(1151618..1154008) Aggregatibacter actinomycetemcomitans D11S-1 8536952 YP_003255835.1 CDS D11S_1234 NC_013416.1 1154200 1156890 D Positively regulates the transcription of the maltose regulon whose gene products are responsible for uptake and catabolism of malto-oligosaccharides; transcriptional regulator MalT 1154200..1156890 Aggregatibacter actinomycetemcomitans D11S-1 8536953 YP_003255836.1 CDS D11S_1235 NC_013416.1 1157043 1157903 R with TehA confers resistance to tellurite; tellurite resistance protein TehB complement(1157043..1157903) Aggregatibacter actinomycetemcomitans D11S-1 8536954 YP_003255837.1 CDS aceE NC_013416.1 1158297 1160954 D E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 1158297..1160954 Aggregatibacter actinomycetemcomitans D11S-1 8536955 YP_003255838.1 CDS D11S_1237 NC_013416.1 1160983 1162653 D identified by Glimmer3; putative; dihydrolipoamide acetyltransferase 1160983..1162653 Aggregatibacter actinomycetemcomitans D11S-1 8536956 YP_003255839.1 CDS D11S_1238 NC_013416.1 1162690 1164171 D E3 component of pyruvate and 2-oxoglutarate dehydrogenase complex; catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase 1162690..1164171 Aggregatibacter actinomycetemcomitans D11S-1 8536957 YP_003255840.1 CDS D11S_1239 NC_013416.1 1164257 1164376 R identified by Glimmer3; putative; hypothetical protein complement(1164257..1164376) Aggregatibacter actinomycetemcomitans D11S-1 8536958 YP_003255841.1 CDS D11S_1240 NC_013416.1 1164601 1165155 R identified by Glimmer3; putative; NfnB protein complement(1164601..1165155) Aggregatibacter actinomycetemcomitans D11S-1 8536959 YP_003255842.1 CDS D11S_1241 NC_013416.1 1165279 1167159 D identified by Glimmer3; putative; signal peptide peptidase SppA, 67K type 1165279..1167159 Aggregatibacter actinomycetemcomitans D11S-1 8536960 YP_003255843.1 CDS tyrA NC_013416.1 1167200 1168324 D catalyzes the formation of prephenate from chorismate and the formation of 4-hydroxyphenylpyruvate from prephenate in tyrosine biosynthesis; bifunctional chorismate mutase/prephenate dehydrogenase 1167200..1168324 Aggregatibacter actinomycetemcomitans D11S-1 8536961 YP_003255844.1 CDS D11S_1243 NC_013416.1 1168398 1169021 D identified by Glimmer3; putative; SUA5 protein 1168398..1169021 Aggregatibacter actinomycetemcomitans D11S-1 8536962 YP_003255845.1 CDS D11S_1244 NC_013416.1 1169076 1170062 D identified by Glimmer3; putative; ribosomal large subunit pseudouridine synthase B 1169076..1170062 Aggregatibacter actinomycetemcomitans D11S-1 8536963 YP_003255846.1 CDS cysB NC_013416.1 1170074 1171045 D LysR-type transcriptional regulator; contains helix-turn-helix (HTH) motif; in Escherichia coli this protein regulates cysteine biosynthesis by controlling expression of the cys regulon; autoregulates expression; crystal structure of Klebsiella aerogenes showed tetramer formation; transcriptional regulator CysB 1170074..1171045 Aggregatibacter actinomycetemcomitans D11S-1 8536964 YP_003255847.1 CDS dapD NC_013416.1 1171130 1171957 D catalyzes the formation of N-succinyl-2-amino-6-ketopimelate from succinyl-CoA and tetrahydrodipicolinate in the lysine biosynthetic pathway; 2,3,4,5-tetrahydropyridine-2,6-carboxylate N-succinyltransferase 1171130..1171957 Aggregatibacter actinomycetemcomitans D11S-1 8536965 YP_003255848.1 CDS D11S_1247 NC_013416.1 1172072 1172392 R highly acidic protein; the structure of the Haemophilus influenzae protein shows similarity to uracil DNA glycosylase inhibitor (Ugi); binds heat-unstable protein (HU-alpha) which is a histone-like protein; dsDNA-mimic protein complement(1172072..1172392) Aggregatibacter actinomycetemcomitans D11S-1 8536966 YP_003255849.1 CDS D11S_1248 NC_013416.1 1172426 1172560 R identified by Glimmer3; putative; hypothetical protein complement(1172426..1172560) Aggregatibacter actinomycetemcomitans D11S-1 8536967 YP_003255850.1 CDS D11S_1249 NC_013416.1 1172863 1173861 R binds to the purF operator and coregulates other genes for de novo purine nucleotide synthesis; is involved in regulation of purB, purC, purEK, purHD, purL, purMN and guaBA expression; binds hypoxanthine and guanine as inducers; DNA-binding transcriptional repressor PurR complement(1172863..1173861) Aggregatibacter actinomycetemcomitans D11S-1 8536968 YP_003255851.1 CDS metX NC_013416.1 1174167 1175270 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(1174167..1175270) Aggregatibacter actinomycetemcomitans D11S-1 8536969 YP_003255852.1 CDS D11S_1251 NC_013416.1 1175463 1176176 D identified by Glimmer3; putative; PurR protein 1175463..1176176 Aggregatibacter actinomycetemcomitans D11S-1 8536970 YP_003255853.1 CDS D11S_1252 NC_013416.1 1176160 1177146 R binds D-fructose as an inducer; involved in regulation of operons for central pathways of carbon metabolism; DNA-binding transcriptional regulator FruR complement(1176160..1177146) Aggregatibacter actinomycetemcomitans D11S-1 8536971 YP_003255854.1 CDS D11S_1253 NC_013416.1 1177981 1178238 D identified by Glimmer3; putative; hypothetical protein 1177981..1178238 Aggregatibacter actinomycetemcomitans D11S-1 8536972 YP_003255855.1 CDS D11S_1254 NC_013416.1 1178274 1178393 R identified by Glimmer3; putative; hypothetical protein complement(1178274..1178393) Aggregatibacter actinomycetemcomitans D11S-1 8536973 YP_003255856.1 CDS D11S_1255 NC_013416.1 1179410 1179892 R identified by Glimmer3; putative; phosphoribosylformylglycinamidine synthase complement(1179410..1179892) Aggregatibacter actinomycetemcomitans D11S-1 8536974 YP_003255857.1 CDS D11S_1256 NC_013416.1 1179907 1180548 R identified by Glimmer3; putative; cytochrome c-type biogenesis protein CcdA complement(1179907..1180548) Aggregatibacter actinomycetemcomitans D11S-1 8536975 YP_003255858.1 CDS D11S_1257 NC_013416.1 1180552 1181622 R identified by Glimmer3; putative; peptide methionine sulfoxide reductase MsrA/msrB complement(1180552..1181622) Aggregatibacter actinomycetemcomitans D11S-1 8536976 YP_003255859.1 CDS D11S_1258 NC_013416.1 1181838 1182530 D identified by Glimmer3; putative; carbonate dehydratase 1181838..1182530 Aggregatibacter actinomycetemcomitans D11S-1 8536977 YP_003255860.1 CDS D11S_1259 NC_013416.1 1182636 1183223 R identified by Glimmer3; putative; hypothetical protein complement(1182636..1183223) Aggregatibacter actinomycetemcomitans D11S-1 8536978 YP_003255861.1 CDS D11S_1260 NC_013416.1 1183288 1183872 R identified by Glimmer3; putative; phosphoheptose isomerase complement(1183288..1183872) Aggregatibacter actinomycetemcomitans D11S-1 8536979 YP_003255862.1 CDS D11S_1261 NC_013416.1 1183885 1184253 R identified by Glimmer3; putative; hypothetical protein complement(1183885..1184253) Aggregatibacter actinomycetemcomitans D11S-1 8536980 YP_003255863.1 CDS D11S_1262 NC_013416.1 1184254 1185978 R identified by Glimmer3; putative; LppC complement(1184254..1185978) Aggregatibacter actinomycetemcomitans D11S-1 8536981 YP_003255864.1 CDS D11S_1263 NC_013416.1 1186055 1186903 D identified by Glimmer3; putative; hypothetical protein 1186055..1186903 Aggregatibacter actinomycetemcomitans D11S-1 8536982 YP_003255865.1 CDS D11S_1264 NC_013416.1 1187173 1188762 D identified by Glimmer3; putative; glycerol-3-phosphate dehydrogenase 1187173..1188762 Aggregatibacter actinomycetemcomitans D11S-1 8536983 YP_003255866.1 CDS D11S_1265 NC_013416.1 1188939 1190276 D identified by Glimmer3; putative; Ndh protein 1188939..1190276 Aggregatibacter actinomycetemcomitans D11S-1 8536984 YP_003255867.1 CDS D11S_1266 NC_013416.1 1190379 1190969 R identified by Glimmer3; putative; fmn-dependent NADH-azoreductase complement(1190379..1190969) Aggregatibacter actinomycetemcomitans D11S-1 8536985 YP_003255868.1 CDS D11S_1267 NC_013416.1 1191162 1192220 D SohB; periplasmic protein; member of the peptidase S49 family; putative periplasmic protease 1191162..1192220 Aggregatibacter actinomycetemcomitans D11S-1 8536986 YP_003255869.1 CDS D11S_1268 NC_013416.1 1192410 1193234 D identified by Glimmer3; putative; Plp4 1192410..1193234 Aggregatibacter actinomycetemcomitans D11S-1 8536987 YP_003255870.1 CDS D11S_1269 NC_013416.1 1193293 1194168 R identified by Glimmer3; putative; fructosamine kinase complement(1193293..1194168) Aggregatibacter actinomycetemcomitans D11S-1 8536988 YP_003255871.1 CDS D11S_1270 NC_013416.1 1194409 1196340 D catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; threonyl-tRNA synthetase 1194409..1196340 Aggregatibacter actinomycetemcomitans D11S-1 8536989 YP_003255872.1 CDS D11S_1271 NC_013416.1 1196591 1197037 D might be a pseudogene; identified by Glimmer3; putative; putative type III restriction-modification system modification protein 1196591..1197037 Aggregatibacter actinomycetemcomitans D11S-1 8536990 YP_003255873.1 CDS D11S_1272 NC_013416.1 1196995 1197123 R identified by Glimmer3; putative; hypothetical protein complement(1196995..1197123) Aggregatibacter actinomycetemcomitans D11S-1 8536991 YP_003255874.1 CDS D11S_1273 NC_013416.1 1197082 1197810 D identified by Glimmer3; putative; putative type III restriction-modification system endonuclease protein 1197082..1197810 Aggregatibacter actinomycetemcomitans D11S-1 8536992 YP_003255875.1 CDS D11S_1274 NC_013416.1 1197813 1198112 D identified by Glimmer3; putative; type III restriction-modification system EcoPI enzyme subunit res 1197813..1198112 Aggregatibacter actinomycetemcomitans D11S-1 8536993 YP_003255876.1 CDS D11S_1275 NC_013416.1 1198101 1198214 R identified by Glimmer3; putative; hypothetical protein complement(1198101..1198214) Aggregatibacter actinomycetemcomitans D11S-1 8536994 YP_003255877.1 CDS D11S_1276 NC_013416.1 1198229 1199008 R identified by Glimmer3; putative; ferredoxin--NADP reductase complement(1198229..1199008) Aggregatibacter actinomycetemcomitans D11S-1 8536995 YP_003255878.1 CDS D11S_1277 NC_013416.1 1199383 1199862 D identified by Glimmer3; putative; translation initiation factor IF-3 1199383..1199862 Aggregatibacter actinomycetemcomitans D11S-1 8536996 YP_003255879.1 CDS D11S_1278 NC_013416.1 1199863 1200006 R identified by Glimmer3; putative; hypothetical protein complement(1199863..1200006) Aggregatibacter actinomycetemcomitans D11S-1 8536997 YP_003255880.1 CDS rplT NC_013416.1 1200337 1200690 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 1200337..1200690 Aggregatibacter actinomycetemcomitans D11S-1 8536998 YP_003255881.1 CDS D11S_1280 NC_013416.1 1200739 1200852 R identified by Glimmer3; putative; hypothetical protein complement(1200739..1200852) Aggregatibacter actinomycetemcomitans D11S-1 8536999 YP_003255882.1 CDS D11S_1281 NC_013416.1 1202020 1202139 R identified by Glimmer3; putative; hypothetical protein complement(1202020..1202139) Aggregatibacter actinomycetemcomitans D11S-1 8537000 YP_003255883.1 CDS D11S_1282 NC_013416.1 1202230 1202760 D identified by Glimmer3; putative; tagatose-bisphosphate aldolase 1202230..1202760 Aggregatibacter actinomycetemcomitans D11S-1 8537001 YP_003255884.1 CDS D11S_1283 NC_013416.1 1202750 1203181 D identified by Glimmer3; putative; tagatose-bisphosphate aldolase 1202750..1203181 Aggregatibacter actinomycetemcomitans D11S-1 8537002 YP_003255885.1 CDS D11S_1284 NC_013416.1 1203199 1203648 D identified by Glimmer3; putative; tagatose-bisphosphate aldolase noncatalytic subunit 1203199..1203648 Aggregatibacter actinomycetemcomitans D11S-1 8537003 YP_003255886.1 CDS D11S_1285 NC_013416.1 1203809 1204567 D identified by Glimmer3; putative; DeoR family transcriptional regulator 1203809..1204567 Aggregatibacter actinomycetemcomitans D11S-1 8537004 YP_003255887.1 CDS D11S_1286 NC_013416.1 1204687 1206537 R catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase complement(1204687..1206537) Aggregatibacter actinomycetemcomitans D11S-1 8537005 YP_003255888.1 CDS D11S_1287 NC_013416.1 1206622 1207512 R identified by Glimmer3; putative; geranyltranstransferase complement(1206622..1207512) Aggregatibacter actinomycetemcomitans D11S-1 8537006 YP_003255889.1 CDS D11S_1288 NC_013416.1 1207523 1207768 R catalyzes the bidirectional exonucleolytic cleavage of DNA; exodeoxyribonuclease VII small subunit complement(1207523..1207768) Aggregatibacter actinomycetemcomitans D11S-1 8537007 YP_003255890.1 CDS D11S_1289 NC_013416.1 1207993 1208889 D catalyzes the carboxylation of acetyl-CoA to malonyl-CoA; forms a tetramer of AccA2D2 subunits; acetyl-CoA carboxylase subunit beta 1207993..1208889 Aggregatibacter actinomycetemcomitans D11S-1 8537008 YP_003255891.1 CDS D11S_1290 NC_013416.1 1208912 1210258 D identified by Glimmer3; putative; FolC bifunctional protein 1208912..1210258 Aggregatibacter actinomycetemcomitans D11S-1 8537009 YP_003255892.1 CDS D11S_1291 NC_013416.1 1210315 1210956 R identified by Glimmer3; putative; phosphoglycerate mutase family protein complement(1210315..1210956) Aggregatibacter actinomycetemcomitans D11S-1 8537010 YP_003255893.1 CDS cls NC_013416.1 1211018 1212475 R catalyzes the transfer of a phosphatidyl group to phosphodidylglycerol to form cardiolipin (diphosphatidylglycerol); cardiolipin synthetase complement(1211018..1212475) Aggregatibacter actinomycetemcomitans D11S-1 8537011 YP_003255894.1 CDS D11S_1293 NC_013416.1 1212489 1213397 R identified by Glimmer3; putative; membrane protein complement(1212489..1213397) Aggregatibacter actinomycetemcomitans D11S-1 8537012 YP_003255895.1 CDS D11S_1294 NC_013416.1 1213528 1213731 D identified by Glimmer3; putative; pseudouridine synthase Rlu family protein 1213528..1213731 Aggregatibacter actinomycetemcomitans D11S-1 8537013 YP_003255896.1 CDS D11S_1295 NC_013416.1 1213739 1214206 D identified by Glimmer3; putative; pseudouridine synthase Rlu family protein 1213739..1214206 Aggregatibacter actinomycetemcomitans D11S-1 8537014 YP_003255897.1 CDS D11S_1296 NC_013416.1 1214251 1215114 D identified by Glimmer3; putative; UAA transporter family 1214251..1215114 Aggregatibacter actinomycetemcomitans D11S-1 8537015 YP_003255898.1 CDS D11S_1297 NC_013416.1 1215197 1215520 D identified by Glimmer3; putative; alkylphosphonate utilization operon protein PhnA 1215197..1215520 Aggregatibacter actinomycetemcomitans D11S-1 8537016 YP_003255899.1 CDS D11S_1298 NC_013416.1 1215876 1216115 R identified by Glimmer3; putative; hypothetical protein complement(1215876..1216115) Aggregatibacter actinomycetemcomitans D11S-1 8537017 YP_003255900.1 CDS D11S_1299 NC_013416.1 1216328 1217266 R identified by Glimmer3; putative; hypothetical protein complement(1216328..1217266) Aggregatibacter actinomycetemcomitans D11S-1 8537018 YP_003255901.1 CDS D11S_1300 NC_013416.1 1217833 1218102 D identified by Glimmer3; putative; hypothetical protein 1217833..1218102 Aggregatibacter actinomycetemcomitans D11S-1 8537019 YP_003255902.1 CDS D11S_1301 NC_013416.1 1218412 1218651 R identified by Glimmer3; putative; hypothetical protein complement(1218412..1218651) Aggregatibacter actinomycetemcomitans D11S-1 8537020 YP_003255903.1 CDS D11S_1302 NC_013416.1 1218729 1220270 D identified by Glimmer3; putative; alpha/beta superfamily hydrolase 1218729..1220270 Aggregatibacter actinomycetemcomitans D11S-1 8537021 YP_003255904.1 CDS D11S_1303 NC_013416.1 1220543 1221916 R identified by Glimmer3; putative; hypothetical protein complement(1220543..1221916) Aggregatibacter actinomycetemcomitans D11S-1 8537022 YP_003255905.1 CDS D11S_1304 NC_013416.1 1221993 1223927 R identified by Glimmer3; putative; ABC transporter-like protein complement(1221993..1223927) Aggregatibacter actinomycetemcomitans D11S-1 8537023 YP_003255906.1 CDS D11S_1305 NC_013416.1 1223947 1225131 R identified by Glimmer3; putative; MacA complement(1223947..1225131) Aggregatibacter actinomycetemcomitans D11S-1 8537024 YP_003255907.1 CDS D11S_1306 NC_013416.1 1225332 1227023 D catalyzes a two-step reaction, first charging a glutamine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; glutaminyl-tRNA synthetase 1225332..1227023 Aggregatibacter actinomycetemcomitans D11S-1 8537025 YP_003255908.1 CDS D11S_1307 NC_013416.1 1227095 1227529 D identified by Glimmer3; putative; hypothetical protein 1227095..1227529 Aggregatibacter actinomycetemcomitans D11S-1 8537026 YP_003255909.1 CDS D11S_1308 NC_013416.1 1227629 1228189 D identified by Glimmer3; putative; 4-alpha-glucanotransferase 1227629..1228189 Aggregatibacter actinomycetemcomitans D11S-1 8537027 YP_003255910.1 CDS D11S_1309 NC_013416.1 1228186 1230381 D catalyzes the transfer of a segment of a 1,4-alpha-D-glucan chain to a primary hydroxy group in a similar glucan chain; glycogen branching enzyme 1228186..1230381 Aggregatibacter actinomycetemcomitans D11S-1 8537028 YP_003255911.1 CDS D11S_1310 NC_013416.1 1230378 1232387 D identified by Glimmer3; putative; glycogen debranching protein GlgX 1230378..1232387 Aggregatibacter actinomycetemcomitans D11S-1 8537029 YP_003255912.1 CDS glgC NC_013416.1 1232414 1233724 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 1232414..1233724 Aggregatibacter actinomycetemcomitans D11S-1 8537030 YP_003255913.1 CDS glgA NC_013416.1 1233926 1235365 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 1233926..1235365 Aggregatibacter actinomycetemcomitans D11S-1 8537031 YP_003255914.1 CDS D11S_1313 NC_013416.1 1235489 1237954 D identified by Glimmer3; putative; glycogen phosphorylase 1235489..1237954 Aggregatibacter actinomycetemcomitans D11S-1 8537032 YP_003255915.1 CDS D11S_1314 NC_013416.1 1237979 1238119 R identified by Glimmer3; putative; hypothetical protein complement(1237979..1238119) Aggregatibacter actinomycetemcomitans D11S-1 8537033 YP_003255916.1 CDS D11S_1315 NC_013416.1 1238073 1238678 R identified by Glimmer3; putative; cobalt transport protein CbiM complement(1238073..1238678) Aggregatibacter actinomycetemcomitans D11S-1 8537034 YP_003255917.1 CDS D11S_1316 NC_013416.1 1238892 1239179 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25 1238892..1239179 Aggregatibacter actinomycetemcomitans D11S-1 8537035 YP_003255918.1 CDS D11S_1317 NC_013416.1 1239328 1239930 D identified by Glimmer3; putative; lipoprotein HlpB 1239328..1239930 Aggregatibacter actinomycetemcomitans D11S-1 8537036 YP_003255919.1 CDS D11S_1318 NC_013416.1 1240105 1240983 D identified by Glimmer3; putative; DacC protein 1240105..1240983 Aggregatibacter actinomycetemcomitans D11S-1 8537037 YP_003255920.1 CDS D11S_1319 NC_013416.1 1241163 1242491 D acts with MukB and MukE to condense the chromosome and allow for segregation during cell division; condesin subunit F 1241163..1242491 Aggregatibacter actinomycetemcomitans D11S-1 8537038 YP_003255921.1 CDS D11S_1320 NC_013416.1 1242614 1245940 D identified by Glimmer3; putative; 2-acyl-glycerophospho-ethanolamine acyltransferase 1242614..1245940 Aggregatibacter actinomycetemcomitans D11S-1 8537039 YP_003255922.1 CDS D11S_1321 NC_013416.1 1245931 1246119 D identified by Glimmer3; putative; 2-acyl-glycerophospho-ethanolamine acyltransferase 1245931..1246119 Aggregatibacter actinomycetemcomitans D11S-1 8537040 YP_003255923.1 CDS D11S_1322 NC_013416.1 1246140 1246880 D acts with MukB and MukF to condense the chromosome and allow for segregation during cell division; condesin subunit E 1246140..1246880 Aggregatibacter actinomycetemcomitans D11S-1 8537041 YP_003255924.1 CDS mukB NC_013416.1 1246880 1251370 D SMC (structural maintenance of chromosomes) family of proteins; involved in chromosome condensatin and partitioning; forms a homodimer and the C-terminal is essential for DNA-binding activity while the purified N-terminal domain binds FtsZ; mutations result in cell division defects; cell division protein MukB 1246880..1251370 Aggregatibacter actinomycetemcomitans D11S-1 8537042 YP_003255925.1 CDS D11S_1324 NC_013416.1 1251446 1252318 D identified by Glimmer3; putative; cell division protein MukB 1251446..1252318 Aggregatibacter actinomycetemcomitans D11S-1 8537043 YP_003255926.1 CDS sbcB NC_013416.1 1252330 1253757 D Exonucleolytic cleavage in the 3'- to 5'-direction to yield nucleoside 5'-phosphates; exonuclease I 1252330..1253757 Aggregatibacter actinomycetemcomitans D11S-1 8537044 YP_003255927.1 CDS D11S_1326 NC_013416.1 1254005 1254178 D identified by Glimmer3; putative; ISPsy8, transposase OrfA 1254005..1254178 Aggregatibacter actinomycetemcomitans D11S-1 8537045 YP_003255928.1 CDS D11S_1327 NC_013416.1 1254220 1254390 D identified by Glimmer3; putative; integrase catalytic subunit 1254220..1254390 Aggregatibacter actinomycetemcomitans D11S-1 8537046 YP_003255929.1 CDS D11S_1328 NC_013416.1 1254719 1254958 D identified by Glimmer3; putative; integrase catalytic subunit 1254719..1254958 Aggregatibacter actinomycetemcomitans D11S-1 8537047 YP_003255930.1 CDS D11S_1329 NC_013416.1 1255346 1255867 D identified by Glimmer3; putative; hypothetical protein 1255346..1255867 Aggregatibacter actinomycetemcomitans D11S-1 8537048 YP_003255931.1 CDS D11S_1330 NC_013416.1 1257106 1257591 D identified by Glimmer3; putative; nonheme iron-containing ferritin 1257106..1257591 Aggregatibacter actinomycetemcomitans D11S-1 8537049 YP_003255932.1 CDS D11S_1331 NC_013416.1 1257607 1258104 D identified by Glimmer3; putative; ferritin 1257607..1258104 Aggregatibacter actinomycetemcomitans D11S-1 8537050 YP_003255933.1 CDS D11S_1332 NC_013416.1 1258166 1258336 R identified by Glimmer3; putative; hypothetical protein complement(1258166..1258336) Aggregatibacter actinomycetemcomitans D11S-1 8537051 YP_003255934.1 CDS D11S_1333 NC_013416.1 1258444 1259217 D Global transcription factor that controls the expression of over 100 target genes in response to anoxia; fumarate/nitrate reduction transcriptional regulator 1258444..1259217 Aggregatibacter actinomycetemcomitans D11S-1 8537052 YP_003255935.1 CDS D11S_1334 NC_013416.1 1259336 1260268 D with UspC and UspD is involved in resistance to UV irradiation; universal stress protein UspE 1259336..1260268 Aggregatibacter actinomycetemcomitans D11S-1 8537053 YP_003255936.1 CDS D11S_1335 NC_013416.1 1260395 1261231 D identified by Glimmer3; putative; universal stress protein UspE 1260395..1261231 Aggregatibacter actinomycetemcomitans D11S-1 8537054 YP_003255937.1 CDS D11S_1336 NC_013416.1 1261316 1263922 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(1261316..1263922) Aggregatibacter actinomycetemcomitans D11S-1 8537055 YP_003255938.1 CDS D11S_1337 NC_013416.1 1264160 1264576 R identified by Glimmer3; putative; fumarate hydratase complement(1264160..1264576) Aggregatibacter actinomycetemcomitans D11S-1 8537056 YP_003255939.1 CDS D11S_1338 NC_013416.1 1264676 1265695 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(1264676..1265695) Aggregatibacter actinomycetemcomitans D11S-1 8537057 YP_003255940.1 CDS pepN NC_013416.1 1265768 1268377 R identified by Glimmer3; putative; aminopeptidase N complement(1265768..1268377) Aggregatibacter actinomycetemcomitans D11S-1 8537058 YP_003255941.1 CDS D11S_1340 NC_013416.1 1268799 1269989 D catalyzes the formation of L-glutamate and an aromatic oxo acid from an aromatic amino acid and 2-oxoglutarate; aromatic amino acid aminotransferase 1268799..1269989 Aggregatibacter actinomycetemcomitans D11S-1 8537059 YP_003255942.1 CDS D11S_1341 NC_013416.1 1270040 1270426 R identified by Glimmer3; putative; AcrR protein complement(1270040..1270426) Aggregatibacter actinomycetemcomitans D11S-1 8537060 YP_003255943.1 CDS D11S_1342 NC_013416.1 1270480 1270656 D identified by Glimmer3; putative; hypothetical protein 1270480..1270656 Aggregatibacter actinomycetemcomitans D11S-1 8537061 YP_003255944.1 CDS D11S_1343 NC_013416.1 1270777 1271736 D identified by Glimmer3; putative; AcrA protein 1270777..1271736 Aggregatibacter actinomycetemcomitans D11S-1 8537062 YP_003255945.1 CDS D11S_1344 NC_013416.1 1271739 1272968 D identified by Glimmer3; putative; CcmA protein 1271739..1272968 Aggregatibacter actinomycetemcomitans D11S-1 8537063 YP_003255946.1 CDS D11S_1345 NC_013416.1 1272972 1274483 D identified by Glimmer3; putative; ABC transporter-like protein 1272972..1274483 Aggregatibacter actinomycetemcomitans D11S-1 8537064 YP_003255947.1 CDS D11S_1346 NC_013416.1 1274485 1275612 D identified by Glimmer3; putative; ABC-2 type transporter 1274485..1275612 Aggregatibacter actinomycetemcomitans D11S-1 8537065 YP_003255948.1 CDS D11S_1347 NC_013416.1 1275632 1276492 D identified by Glimmer3; putative; TolC protein 1275632..1276492 Aggregatibacter actinomycetemcomitans D11S-1 8537066 YP_003255949.1 CDS D11S_1348 NC_013416.1 1276511 1277530 D identified by Glimmer3; putative; HmuU protein 1276511..1277530 Aggregatibacter actinomycetemcomitans D11S-1 8537067 YP_003255950.1 CDS D11S_1349 NC_013416.1 1277530 1278324 D identified by Glimmer3; putative; cobalamin/Fe3+-siderophore ABC transporter ATPase 1277530..1278324 Aggregatibacter actinomycetemcomitans D11S-1 8537068 YP_003255951.1 CDS D11S_1350 NC_013416.1 1278337 1279371 D identified by Glimmer3; putative; iron chelatin ABC transporter substrate binding protein 1278337..1279371 Aggregatibacter actinomycetemcomitans D11S-1 8537069 YP_003255952.1 CDS D11S_1351 NC_013416.1 1279453 1279662 D identified by Glimmer3; putative; TOBE domain-containing protein 1279453..1279662 Aggregatibacter actinomycetemcomitans D11S-1 8537070 YP_003255953.1 CDS D11S_1352 NC_013416.1 1279781 1280215 R identified by Glimmer3; putative; outer membrane receptor FepA complement(1279781..1280215) Aggregatibacter actinomycetemcomitans D11S-1 8537071 YP_003255954.1 CDS D11S_1353 NC_013416.1 1280292 1281008 R identified by Glimmer3; putative; TonB dependent outer membrane siderophore receptor protein complement(1280292..1281008) Aggregatibacter actinomycetemcomitans D11S-1 8537072 YP_003255955.1 CDS D11S_1354 NC_013416.1 1281036 1281896 R identified by Glimmer3; putative; TonB dependent outer membrane siderophore receptor protein complement(1281036..1281896) Aggregatibacter actinomycetemcomitans D11S-1 8537073 YP_003255956.1 CDS D11S_1355 NC_013416.1 1281991 1282740 R identified by Glimmer3; putative; iron chelate uptake ABC transporter ATP-binding protein complement(1281991..1282740) Aggregatibacter actinomycetemcomitans D11S-1 8537074 YP_003255957.1 CDS D11S_1356 NC_013416.1 1282737 1283750 R identified by Glimmer3; putative; FecCD family ABC transporter permease complement(1282737..1283750) Aggregatibacter actinomycetemcomitans D11S-1 8537075 YP_003255958.1 CDS D11S_1357 NC_013416.1 1283750 1284751 R identified by Glimmer3; putative; iron ABC transporter solute-binding protein complement(1283750..1284751) Aggregatibacter actinomycetemcomitans D11S-1 8537076 YP_003255959.1 CDS D11S_1358 NC_013416.1 1284840 1285013 D identified by Glimmer3; putative; hypothetical protein 1284840..1285013 Aggregatibacter actinomycetemcomitans D11S-1 8537077 YP_003255960.1 CDS D11S_1359 NC_013416.1 1285015 1287027 D identified by Glimmer3; putative; TonB-dependent receptor 1285015..1287027 Aggregatibacter actinomycetemcomitans D11S-1 8537078 YP_003255961.1 CDS D11S_1360 NC_013416.1 1287117 1287533 R identified by Glimmer3; putative; DoxX family protein complement(1287117..1287533) Aggregatibacter actinomycetemcomitans D11S-1 8537079 YP_003255962.1 CDS D11S_1361 NC_013416.1 1287674 1288516 D identified by Glimmer3; putative; threonyl-tRNA synthetase 1287674..1288516 Aggregatibacter actinomycetemcomitans D11S-1 8537080 YP_003255963.1 CDS D11S_1362 NC_013416.1 1288513 1288638 D identified by Glimmer3; putative; threonyl-tRNA synthetase 1288513..1288638 Aggregatibacter actinomycetemcomitans D11S-1 8537081 YP_003255964.1 CDS D11S_1363 NC_013416.1 1288733 1289221 R identified by Glimmer3; putative; NlpC complement(1288733..1289221) Aggregatibacter actinomycetemcomitans D11S-1 8537082 YP_003255965.1 CDS ihfA NC_013416.1 1289273 1289569 R This protein is one of the two subunits of integration host factor, a specific DNA-binding protein that functions in genetic recombination as well as in transcriptional and translational control; integration host factor subunit alpha complement(1289273..1289569) Aggregatibacter actinomycetemcomitans D11S-1 8537083 YP_003255966.1 CDS pheT NC_013416.1 1289573 1291963 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(1289573..1291963) Aggregatibacter actinomycetemcomitans D11S-1 8537084 YP_003255967.1 CDS pheS NC_013416.1 1291983 1292972 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(1291983..1292972) Aggregatibacter actinomycetemcomitans D11S-1 8537085 YP_003255968.1 CDS D11S_1367 NC_013416.1 1293234 1294109 R putative metalloprotease; heat shock protein HtpX complement(1293234..1294109) Aggregatibacter actinomycetemcomitans D11S-1 8537086 YP_003255969.1 CDS D11S_1368 NC_013416.1 1294792 1295727 D identified by Glimmer3; putative; arabinose 5-phosphate isomerase 1294792..1295727 Aggregatibacter actinomycetemcomitans D11S-1 8537087 YP_003255970.1 CDS D11S_1369 NC_013416.1 1295727 1296281 D identified by Glimmer3; putative; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 1295727..1296281 Aggregatibacter actinomycetemcomitans D11S-1 8537088 YP_003255971.1 CDS D11S_1370 NC_013416.1 1296449 1297996 D with component II, the glutamine amidotransferase, catalyzes the formation of anthranilate from chorismate and glutamine; anthranilate synthase component I 1296449..1297996 Aggregatibacter actinomycetemcomitans D11S-1 8537089 YP_003255972.1 CDS D11S_1371 NC_013416.1 1298007 1298531 D identified by Glimmer3; putative; anthranilate synthase component II 1298007..1298531 Aggregatibacter actinomycetemcomitans D11S-1 8537090 YP_003255973.1 CDS D11S_1372 NC_013416.1 1298670 1299062 D identified by Glimmer3; putative; anthranilate phosphoribosyltransferase 1298670..1299062 Aggregatibacter actinomycetemcomitans D11S-1 8537091 YP_003255974.1 CDS D11S_1373 NC_013416.1 1299074 1300075 D identified by Glimmer3; putative; anthranilate phosphoribosyltransferase 1299074..1300075 Aggregatibacter actinomycetemcomitans D11S-1 8537092 YP_003255975.1 CDS D11S_1374 NC_013416.1 1300084 1301514 D monomeric bifunctional protein; functions in tryptophan biosynthesis pathway; phosphoribosylanthranilate is rearranged to carboxyphenylaminodeoxyribulosephosphate which is then closed to form indole-3-glycerol phosphate; bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase 1300084..1301514 Aggregatibacter actinomycetemcomitans D11S-1 8537093 YP_003255976.1 CDS D11S_1375 NC_013416.1 1301653 1301817 D identified by Glimmer3; putative; hypothetical protein 1301653..1301817 Aggregatibacter actinomycetemcomitans D11S-1 8537094 YP_003255977.1 CDS D11S_1376 NC_013416.1 1301966 1302241 D identified by Glimmer3; putative; hydrogenase 2 accessory protein HypG 1301966..1302241 Aggregatibacter actinomycetemcomitans D11S-1 8537095 YP_003255978.1 CDS D11S_1377 NC_013416.1 1302362 1302739 R identified by Glimmer3; putative; hypothetical protein complement(1302362..1302739) Aggregatibacter actinomycetemcomitans D11S-1 8537096 YP_003255979.1 CDS D11S_1378 NC_013416.1 1303064 1303222 D identified by Glimmer3; putative; hypothetical protein 1303064..1303222 Aggregatibacter actinomycetemcomitans D11S-1 8537097 YP_003255980.1 CDS D11S_1379 NC_013416.1 1303256 1303522 D catalyzes the decarboxylation of oxaloacetate to form pyruvate and carbon dioxide; oxaloacetate decarboxylase subunit gamma 1303256..1303522 Aggregatibacter actinomycetemcomitans D11S-1 8537098 YP_003255981.1 CDS D11S_1380 NC_013416.1 1303538 1305334 D catalyzes the formation of pyruvate from oxaloacetate; oxaloacetate decarboxylase 1303538..1305334 Aggregatibacter actinomycetemcomitans D11S-1 8537099 YP_003255982.1 CDS D11S_1381 NC_013416.1 1305345 1306649 D identified by Glimmer3; putative; oxaloacetate decarboxylase subunit beta 1305345..1306649 Aggregatibacter actinomycetemcomitans D11S-1 8537100 YP_003255983.1 CDS D11S_1382 NC_013416.1 1307266 1307382 D identified by Glimmer3; putative; hypothetical protein 1307266..1307382 Aggregatibacter actinomycetemcomitans D11S-1 8537101 YP_003255984.1 CDS D11S_1383 NC_013416.1 1308854 1309618 R identified by Glimmer3; putative; transferrin-binding protein 1 complement(1308854..1309618) Aggregatibacter actinomycetemcomitans D11S-1 8537102 YP_003255985.1 CDS D11S_1384 NC_013416.1 1309867 1309998 R identified by Glimmer3; putative; hypothetical protein complement(1309867..1309998) Aggregatibacter actinomycetemcomitans D11S-1 8537103 YP_003255986.1 CDS D11S_1385 NC_013416.1 1310024 1310791 D identified by Glimmer3; putative; NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg 1310024..1310791 Aggregatibacter actinomycetemcomitans D11S-1 8537104 YP_003255987.1 CDS D11S_1386 NC_013416.1 1310801 1311994 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1310801..1311994 Aggregatibacter actinomycetemcomitans D11S-1 8537105 YP_003255988.1 CDS trpA NC_013416.1 1311997 1312803 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1311997..1312803 Aggregatibacter actinomycetemcomitans D11S-1 8537106 YP_003255989.1 CDS D11S_1388 NC_013416.1 1313079 1314764 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha 1313079..1314764 Aggregatibacter actinomycetemcomitans D11S-1 8537107 YP_003255990.1 CDS D11S_1389 NC_013416.1 1314895 1315884 D identified by Glimmer3; putative; ribonucleoside-diphosphate reductase subunit beta 1314895..1315884 Aggregatibacter actinomycetemcomitans D11S-1 8537108 YP_003255991.1 CDS D11S_1390 NC_013416.1 1316131 1317576 D catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase 1316131..1317576 Aggregatibacter actinomycetemcomitans D11S-1 8537109 YP_003255992.1 CDS D11S_1391 NC_013416.1 1317680 1317982 R identified by Glimmer3; putative; autoinducer-2 (AI-2) modifying protein LsrG complement(1317680..1317982) Aggregatibacter actinomycetemcomitans D11S-1 8537110 YP_003255993.1 CDS D11S_1392 NC_013416.1 1318015 1318893 R identified by Glimmer3; putative; aldolase complement(1318015..1318893) Aggregatibacter actinomycetemcomitans D11S-1 8537111 YP_003255994.1 CDS D11S_1393 NC_013416.1 1318917 1320014 R identified by Glimmer3; putative; autoinducer-2 (AI-2) kinase complement(1318917..1320014) Aggregatibacter actinomycetemcomitans D11S-1 8537112 YP_003255995.1 CDS D11S_1394 NC_013416.1 1320039 1321043 R identified by Glimmer3; putative; sugar ABC transporter permease complement(1320039..1321043) Aggregatibacter actinomycetemcomitans D11S-1 8537113 YP_003255996.1 CDS D11S_1395 NC_013416.1 1321057 1322088 R identified by Glimmer3; putative; inner membrane ABC transporter permease YdeY complement(1321057..1322088) Aggregatibacter actinomycetemcomitans D11S-1 8537114 YP_003255997.1 CDS D11S_1396 NC_013416.1 1322097 1323614 R identified by Glimmer3; putative; ribose import ATP-binding protein RbsA complement(1322097..1323614) Aggregatibacter actinomycetemcomitans D11S-1 8537115 YP_003255998.1 CDS D11S_1397 NC_013416.1 1323858 1324823 D identified by Glimmer3; putative; DeoR family transcriptional regulator 1323858..1324823 Aggregatibacter actinomycetemcomitans D11S-1 8537116 YP_003255999.1 CDS D11S_1398 NC_013416.1 1324872 1326446 D identified by Glimmer3; putative; autoinducer-2 (AI-2) kinase 1324872..1326446 Aggregatibacter actinomycetemcomitans D11S-1 8537117 YP_003256000.1 CDS bioD NC_013416.1 1326534 1327262 R DTB synthetase; dethiobiotin synthase; involved in production of dethiobiotin from ATP and 7,8-diaminononanoate and carbon dioxide; contains magnesium; dithiobiotin synthetase complement(1326534..1327262) Aggregatibacter actinomycetemcomitans D11S-1 8537118 YP_003256001.1 CDS D11S_1400 NC_013416.1 1327339 1328568 R identified by Glimmer3; putative; Mlc complement(1327339..1328568) Aggregatibacter actinomycetemcomitans D11S-1 8537119 YP_003256002.1 CDS asnC NC_013416.1 1328764 1330167 D catalyzes a two-step reaction, first charging an asparagine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; asparaginyl-tRNA synthetase 1328764..1330167 Aggregatibacter actinomycetemcomitans D11S-1 8537120 YP_003256003.1 CDS D11S_1402 NC_013416.1 1330330 1330791 R identified by Glimmer3; putative; ClpXP protease specificity-enhancing factor complement(1330330..1330791) Aggregatibacter actinomycetemcomitans D11S-1 8537121 YP_003256004.1 CDS D11S_1403 NC_013416.1 1330803 1331444 R identified by Glimmer3; putative; Gst protein complement(1330803..1331444) Aggregatibacter actinomycetemcomitans D11S-1 8537122 YP_003256005.1 CDS D11S_1404 NC_013416.1 1331644 1332099 R identified by Glimmer3; putative; molybdopterin converting factor subunit 2 complement(1331644..1332099) Aggregatibacter actinomycetemcomitans D11S-1 8537123 YP_003256006.1 CDS D11S_1405 NC_013416.1 1332100 1332348 R identified by Glimmer3; putative; molybdopterin converting factor subunit 1 complement(1332100..1332348) Aggregatibacter actinomycetemcomitans D11S-1 8537124 YP_003256007.1 CDS D11S_1406 NC_013416.1 1332348 1332869 R identified by Glimmer3; putative; molybdenum cofactor biosynthesis protein C complement(1332348..1332869) Aggregatibacter actinomycetemcomitans D11S-1 8537125 YP_003256008.1 CDS moaA NC_013416.1 1332882 1333895 R together with moaC, is involved in the conversion of a guanosine derivative (GXP) into molybdopterin precursor Z; molybdenum cofactor biosynthesis protein A complement(1332882..1333895) Aggregatibacter actinomycetemcomitans D11S-1 8537126 YP_003256009.1 CDS D11S_1408 NC_013416.1 1334253 1335221 D identified by Glimmer3; putative; hypothetical protein 1334253..1335221 Aggregatibacter actinomycetemcomitans D11S-1 8537127 YP_003256010.1 CDS D11S_1409 NC_013416.1 1335286 1336278 R identified by Glimmer3; putative; death-on-curing protein complement(1335286..1336278) Aggregatibacter actinomycetemcomitans D11S-1 8537128 YP_003256011.1 CDS D11S_1410 NC_013416.1 1336461 1337165 D alpha-aspartyl dipeptidase; catalyzes the hydrolysis of dipeptides with an N-terminal aspartate residue; belongs to peptidase S51 family; peptidase E 1336461..1337165 Aggregatibacter actinomycetemcomitans D11S-1 8537129 YP_003256012.1 CDS D11S_1411 NC_013416.1 1337249 1338706 R Required for the synthesis of the thiazole moiety; thiamine biosynthesis protein ThiI complement(1337249..1338706) Aggregatibacter actinomycetemcomitans D11S-1 8537130 YP_003256013.1 CDS D11S_1412 NC_013416.1 1339012 1340112 D identified by Glimmer3; putative; cytochrome c-type protein TorY 1339012..1340112 Aggregatibacter actinomycetemcomitans D11S-1 8537131 YP_003256014.1 CDS D11S_1413 NC_013416.1 1340173 1342653 D identified by Glimmer3; putative; trimethylamiNe-n-oxide reductase 2 1340173..1342653 Aggregatibacter actinomycetemcomitans D11S-1 8537132 YP_003256015.1 CDS D11S_1414 NC_013416.1 1342711 1343490 R identified by Glimmer3; putative; MmcQ protein complement(1342711..1343490) Aggregatibacter actinomycetemcomitans D11S-1 8537133 YP_003256016.1 CDS D11S_1415 NC_013416.1 1343720 1345177 D identified by Glimmer3; putative; CitT protein 1343720..1345177 Aggregatibacter actinomycetemcomitans D11S-1 8537134 YP_003256017.1 CDS D11S_1416 NC_013416.1 1345268 1345390 D identified by Glimmer3; putative; hypothetical protein 1345268..1345390 Aggregatibacter actinomycetemcomitans D11S-1 8537135 YP_003256018.1 CDS D11S_1417 NC_013416.1 1345394 1345648 D identified by Glimmer3; putative; putative plasmid stability protein StbD 1345394..1345648 Aggregatibacter actinomycetemcomitans D11S-1 8537136 YP_003256019.1 CDS D11S_1418 NC_013416.1 1345645 1345929 D identified by Glimmer3; putative; putative plasmid stability protein StbE 1345645..1345929 Aggregatibacter actinomycetemcomitans D11S-1 8537137 YP_003256020.1 CDS D11S_1419 NC_013416.1 1345942 1346727 R identified by Glimmer3; putative; tRNA pseudouridine synthase A complement(1345942..1346727) Aggregatibacter actinomycetemcomitans D11S-1 8537138 YP_003256021.1 CDS D11S_1420 NC_013416.1 1346726 1346845 D identified by Glimmer3; putative; hypothetical protein 1346726..1346845 Aggregatibacter actinomycetemcomitans D11S-1 8537139 YP_003256022.1 CDS rpsI NC_013416.1 1346890 1347282 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(1346890..1347282) Aggregatibacter actinomycetemcomitans D11S-1 8537140 YP_003256023.1 CDS rplM NC_013416.1 1347299 1347727 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(1347299..1347727) Aggregatibacter actinomycetemcomitans D11S-1 8537141 YP_003256024.1 CDS D11S_1423 NC_013416.1 1347971 1348567 R identified by Glimmer3; putative; tellurite resistance protein TehB complement(1347971..1348567) Aggregatibacter actinomycetemcomitans D11S-1 8537142 YP_003256025.1 CDS D11S_1424 NC_013416.1 1348580 1350559 R identified by Glimmer3; putative; exodeoxyribonuclease V subunit alpha complement(1348580..1350559) Aggregatibacter actinomycetemcomitans D11S-1 8537143 YP_003256026.1 CDS D11S_1425 NC_013416.1 1350559 1354224 R identified by Glimmer3; putative; exodeoxyribonuclease V subunit beta complement(1350559..1354224) Aggregatibacter actinomycetemcomitans D11S-1 8537144 YP_003256027.1 CDS D11S_1426 NC_013416.1 1354295 1354651 R identified by Glimmer3; putative; DsrE protein complement(1354295..1354651) Aggregatibacter actinomycetemcomitans D11S-1 8537145 YP_003256028.1 CDS D11S_1428 NC_013416.1 1355076 1355606 R catalyzes the dehydration of (3R)-3-hydroxydecanoyl-ACP to 2,3-decenoyl-ACP or 3,4-decenoyl-ACP; 3-hydroxydecanoyl-(acyl carrier protein) dehydratase complement(1355076..1355606) Aggregatibacter actinomycetemcomitans D11S-1 8537147 YP_003256029.1 CDS D11S_1429 NC_013416.1 1355749 1357533 R identified by Glimmer3; putative; Putative protease La-like protein complement(1355749..1357533) Aggregatibacter actinomycetemcomitans D11S-1 8537148 YP_003256030.1 CDS D11S_1430 NC_013416.1 1357680 1358126 D identified by Glimmer3; putative; hypothetical protein 1357680..1358126 Aggregatibacter actinomycetemcomitans D11S-1 8537149 YP_003256031.1 CDS D11S_1431 NC_013416.1 1358192 1358401 R identified by Glimmer3; putative; cold shock domain-containing protein CspD complement(1358192..1358401) Aggregatibacter actinomycetemcomitans D11S-1 8537150 YP_003256032.1 CDS D11S_1432 NC_013416.1 1358592 1358756 R identified by Glimmer3; putative; hypothetical protein complement(1358592..1358756) Aggregatibacter actinomycetemcomitans D11S-1 8537151 YP_003256033.1 CDS D11S_1433 NC_013416.1 1358810 1359523 R catalyzes formation of pseudouridine at position 65 in tRNA-Ile1 and tRNA-Asp; tRNA pseudouridine synthase C complement(1358810..1359523) Aggregatibacter actinomycetemcomitans D11S-1 8537152 YP_003256034.1 CDS D11S_1434 NC_013416.1 1359520 1359834 R identified by Glimmer3; putative; hypothetical protein complement(1359520..1359834) Aggregatibacter actinomycetemcomitans D11S-1 8537153 YP_003256035.1 CDS D11S_1435 NC_013416.1 1359929 1360723 D identified by Glimmer3; putative; Zn-ribbon-containing protein 1359929..1360723 Aggregatibacter actinomycetemcomitans D11S-1 8537154 YP_003256036.1 CDS queF NC_013416.1 1360732 1361571 D catalyzes the NADPH-dependent reduction of 7-cyano-7-deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1) in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1360732..1361571 Aggregatibacter actinomycetemcomitans D11S-1 8537155 YP_003256037.1 CDS D11S_1437 NC_013416.1 1361619 1362869 R identified by Glimmer3; putative; two component Fis family transcriptional regulator complement(1361619..1362869) Aggregatibacter actinomycetemcomitans D11S-1 8537156 YP_003256038.1 CDS D11S_1438 NC_013416.1 1362862 1364844 R identified by Glimmer3; putative; PgtB complement(1362862..1364844) Aggregatibacter actinomycetemcomitans D11S-1 8537157 YP_003256039.1 CDS D11S_1439 NC_013416.1 1364841 1366091 R identified by Glimmer3; putative; PgtC complement(1364841..1366091) Aggregatibacter actinomycetemcomitans D11S-1 8537158 YP_003256040.1 CDS D11S_1440 NC_013416.1 1366465 1367463 D identified by Glimmer3; putative; extracellular solute-binding protein 1366465..1367463 Aggregatibacter actinomycetemcomitans D11S-1 8537159 YP_003256041.1 CDS D11S_1441 NC_013416.1 1367485 1368282 D identified by Glimmer3; putative; ABC transporter-like protein 1367485..1368282 Aggregatibacter actinomycetemcomitans D11S-1 8537160 YP_003256042.1 CDS D11S_1442 NC_013416.1 1368288 1369457 D identified by Glimmer3; putative; binding-protein-dependent transport systems inner membrane component 1368288..1369457 Aggregatibacter actinomycetemcomitans D11S-1 8537161 YP_003256043.1 CDS D11S_1443 NC_013416.1 1369479 1370216 D identified by Glimmer3; putative; MsmK 1369479..1370216 Aggregatibacter actinomycetemcomitans D11S-1 8537162 YP_003256044.1 CDS D11S_1444 NC_013416.1 1370558 1372387 R identified by Glimmer3; putative; ATP-dependent metallopeptidase HflB complement(1370558..1372387) Aggregatibacter actinomycetemcomitans D11S-1 8537163 YP_003256045.1 CDS D11S_1445 NC_013416.1 1372503 1373132 R identified by Glimmer3; putative; ribosomal RNA large subunit methyltransferase J complement(1372503..1373132) Aggregatibacter actinomycetemcomitans D11S-1 8537164 YP_003256046.1 CDS purU NC_013416.1 1373267 1374115 R produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase complement(1373267..1374115) Aggregatibacter actinomycetemcomitans D11S-1 8537165 YP_003256047.1 CDS D11S_1447 NC_013416.1 1374184 1374582 R identified by Glimmer3; putative; H-NS histone family complement(1374184..1374582) Aggregatibacter actinomycetemcomitans D11S-1 8537166 YP_003256048.1 CDS D11S_1448 NC_013416.1 1375023 1376555 D identified by Glimmer3; putative; Na+/H+ antiporter family 1375023..1376555 Aggregatibacter actinomycetemcomitans D11S-1 8537167 YP_003256050.1 CDS D11S_1455 NC_013416.1 1383160 1383987 R converts L-glutamate to D-glutamate, a component of peptidoglycan; glutamate racemase complement(1383160..1383987) Aggregatibacter actinomycetemcomitans D11S-1 8537174 YP_003256051.1 CDS D11S_1456 NC_013416.1 1384018 1384515 R identified by Glimmer3; putative; chorismate--pyruvate lyase complement(1384018..1384515) Aggregatibacter actinomycetemcomitans D11S-1 8537175 YP_003256052.1 CDS D11S_1457 NC_013416.1 1384508 1386589 R catalyzes branch migration in Holliday junction intermediates; ATP-dependent DNA helicase RecG complement(1384508..1386589) Aggregatibacter actinomycetemcomitans D11S-1 8537176 YP_003256053.1 CDS D11S_1458 NC_013416.1 1386590 1388713 R identified by Glimmer3; putative; GTP pyrophosphokinase complement(1386590..1388713) Aggregatibacter actinomycetemcomitans D11S-1 8537177 YP_003256054.1 CDS rpoZ NC_013416.1 1388759 1389025 R promotes RNA polymerase assembly or stability; latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega complement(1388759..1389025) Aggregatibacter actinomycetemcomitans D11S-1 8537178 YP_003256055.1 CDS gmk NC_013416.1 1389083 1389721 R Essential for recycling GMP and indirectly, cGMP; guanylate kinase complement(1389083..1389721) Aggregatibacter actinomycetemcomitans D11S-1 8537179 YP_003256056.1 CDS D11S_1461 NC_013416.1 1389734 1389883 D identified by Glimmer3; putative; hypothetical protein 1389734..1389883 Aggregatibacter actinomycetemcomitans D11S-1 8537180 YP_003256057.1 CDS D11S_1462 NC_013416.1 1389963 1390967 D identified by Glimmer3; putative; glyceraldehyde-3-phosphate dehydrogenase 1389963..1390967 Aggregatibacter actinomycetemcomitans D11S-1 8537181 YP_003256058.1 CDS D11S_1463 NC_013416.1 1391061 1391477 R identified by Glimmer3; putative; integral membrane protein complement(1391061..1391477) Aggregatibacter actinomycetemcomitans D11S-1 8537182 YP_003256059.1 CDS D11S_1464 NC_013416.1 1391598 1391978 D identified by Glimmer3; putative; lipid transport protein 1391598..1391978 Aggregatibacter actinomycetemcomitans D11S-1 8537183 YP_003256060.1 CDS D11S_1465 NC_013416.1 1391971 1392264 D identified by Glimmer3; putative; hypothetical protein 1391971..1392264 Aggregatibacter actinomycetemcomitans D11S-1 8537184 YP_003256061.1 CDS D11S_1466 NC_013416.1 1392297 1393490 D identified by Glimmer3; putative; exodeoxyribonuclease VII large subunit 1392297..1393490 Aggregatibacter actinomycetemcomitans D11S-1 8537185 YP_003256062.1 CDS xseA NC_013416.1 1393497 1394831 D bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides; exodeoxyribonuclease VII large subunit 1393497..1394831 Aggregatibacter actinomycetemcomitans D11S-1 8537186 YP_003256063.1 CDS D11S_1468 NC_013416.1 1394837 1395691 R identified by Glimmer3; putative; ATPase complement(1394837..1395691) Aggregatibacter actinomycetemcomitans D11S-1 8537187 YP_003256064.1 CDS D11S_1469 NC_013416.1 1395719 1396240 R identified by Glimmer3; putative; nitrogen regulatory IIA protein complement(1395719..1396240) Aggregatibacter actinomycetemcomitans D11S-1 8537188 YP_003256065.1 CDS D11S_1470 NC_013416.1 1396244 1396969 R identified by Glimmer3; putative; ABC transporter ATP-binding protein complement(1396244..1396969) Aggregatibacter actinomycetemcomitans D11S-1 8537189 YP_003256066.1 CDS D11S_1471 NC_013416.1 1396975 1397493 R identified by Glimmer3; putative; lipopolysaccharide transport periplasmic protein LptA complement(1396975..1397493) Aggregatibacter actinomycetemcomitans D11S-1 8537190 YP_003256067.1 CDS D11S_1472 NC_013416.1 1397474 1398049 R identified by Glimmer3; putative; hypothetical protein complement(1397474..1398049) Aggregatibacter actinomycetemcomitans D11S-1 8537191 YP_003256068.1 CDS D11S_1473 NC_013416.1 1398333 1399130 D identified by Glimmer3; putative; ABC transporter ATPase 1398333..1399130 Aggregatibacter actinomycetemcomitans D11S-1 8537192 YP_003256069.1 CDS D11S_1474 NC_013416.1 1399124 1399909 D identified by Glimmer3; putative; ABC transporter permease 1399124..1399909 Aggregatibacter actinomycetemcomitans D11S-1 8537193 YP_003256070.1 CDS D11S_1475 NC_013416.1 1399932 1400441 D identified by Glimmer3; putative; ABC transporter periplasmic protein 1399932..1400441 Aggregatibacter actinomycetemcomitans D11S-1 8537194 YP_003256071.1 CDS D11S_1476 NC_013416.1 1400470 1401111 D identified by Glimmer3; putative; ABC transporter 1400470..1401111 Aggregatibacter actinomycetemcomitans D11S-1 8537195 YP_003256072.1 CDS D11S_1477 NC_013416.1 1401115 1401450 D identified by Glimmer3; putative; putative NTP binding protein, contains STAS domain 1401115..1401450 Aggregatibacter actinomycetemcomitans D11S-1 8537196 YP_003256073.1 CDS D11S_1478 NC_013416.1 1401450 1401707 D identified by Glimmer3; putative; BolA protein 1401450..1401707 Aggregatibacter actinomycetemcomitans D11S-1 8537197 YP_003256074.1 CDS D11S_1479 NC_013416.1 1401724 1403001 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1401724..1403001 Aggregatibacter actinomycetemcomitans D11S-1 8537198 YP_003256075.1 CDS D11S_1480 NC_013416.1 1403063 1403353 R identified by Glimmer3; putative; DNA mismatch repair protein complement(1403063..1403353) Aggregatibacter actinomycetemcomitans D11S-1 8537199 YP_003256076.1 CDS D11S_1481 NC_013416.1 1403556 1404986 D identified by Glimmer3; putative; FadL protein 1403556..1404986 Aggregatibacter actinomycetemcomitans D11S-1 8537200 YP_003256077.1 CDS D11S_1482 NC_013416.1 1405063 1405602 D identified by Glimmer3; putative; methylated-DNA--protein-cysteine methyltransferase 1405063..1405602 Aggregatibacter actinomycetemcomitans D11S-1 8537201 YP_003256078.1 CDS D11S_1483 NC_013416.1 1405599 1406267 D MutH; Sequence-specific endonuclease that cleaves unmethylated GATC sequences during DNA repair; DNA mismatch repair protein 1405599..1406267 Aggregatibacter actinomycetemcomitans D11S-1 8537202 YP_003256079.1 CDS D11S_1484 NC_013416.1 1406332 1407057 D identified by Glimmer3; putative; protein YegH 1406332..1407057 Aggregatibacter actinomycetemcomitans D11S-1 8537203 YP_003256080.1 CDS D11S_1485 NC_013416.1 1407166 1408575 R identified by Glimmer3; putative; glutamine synthetase complement(1407166..1408575) Aggregatibacter actinomycetemcomitans D11S-1 8537204 YP_003256081.1 CDS D11S_1486 NC_013416.1 1408962 1410815 D identified by Glimmer3; putative; TypA protein 1408962..1410815 Aggregatibacter actinomycetemcomitans D11S-1 8537205 YP_003256082.1 CDS D11S_1487 NC_013416.1 1410812 1410925 R identified by Glimmer3; putative; hypothetical protein complement(1410812..1410925) Aggregatibacter actinomycetemcomitans D11S-1 8537206 YP_003256083.1 CDS D11S_1488 NC_013416.1 1411041 1413551 D identified by Glimmer3; putative; autotransporter adhesin 1411041..1413551 Aggregatibacter actinomycetemcomitans D11S-1 8537207 YP_003256084.1 CDS D11S_1489 NC_013416.1 1413615 1414079 R identified by Glimmer3; putative; peroxiredoxin Q complement(1413615..1414079) Aggregatibacter actinomycetemcomitans D11S-1 8537208 YP_003256085.1 CDS D11S_1490 NC_013416.1 1414237 1415130 D catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase 1414237..1415130 Aggregatibacter actinomycetemcomitans D11S-1 8537209 YP_003256086.1 CDS D11S_1491 NC_013416.1 1415243 1416247 D identified by Glimmer3; putative; NlpB protein 1415243..1416247 Aggregatibacter actinomycetemcomitans D11S-1 8537210 YP_003256087.1 CDS D11S_1492 NC_013416.1 1416382 1417893 D identified by Glimmer3; putative; glycine betaine 1416382..1417893 Aggregatibacter actinomycetemcomitans D11S-1 8537211 YP_003256088.1 CDS D11S_1493 NC_013416.1 1418208 1419044 D identified by Glimmer3; putative; glycine betaine transport ATP-binding protein opuAA 1418208..1419044 Aggregatibacter actinomycetemcomitans D11S-1 8537212 YP_003256089.1 CDS D11S_1494 NC_013416.1 1419097 1419792 R identified by Glimmer3; putative; succinyl-diaminopimelate desuccinylase complement(1419097..1419792) Aggregatibacter actinomycetemcomitans D11S-1 8537213 YP_003256090.1 CDS D11S_1495 NC_013416.1 1419785 1421173 R identified by Glimmer3; putative; putative nicotinate phosphoribosyltransferase complement(1419785..1421173) Aggregatibacter actinomycetemcomitans D11S-1 8537214 YP_003256091.1 CDS D11S_1496 NC_013416.1 1421312 1421443 D identified by Glimmer3; putative; hypothetical protein 1421312..1421443 Aggregatibacter actinomycetemcomitans D11S-1 8537215 YP_003256092.1 CDS thrA NC_013416.1 1421532 1423979 D multifunctional homotetrameric enzyme that catalyzes the phosphorylation of aspartate to form aspartyl-4-phosphate as well as conversion of aspartate semialdehyde to homoserine; functions in a number of amino acid biosynthetic pathways; bifunctional aspartokinase I/homoserine dehydrogenase I 1421532..1423979 Aggregatibacter actinomycetemcomitans D11S-1 8537216 YP_003256093.1 CDS D11S_1498 NC_013416.1 1423992 1424936 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine in threonine biosynthesis from asparate; homoserine kinase 1423992..1424936 Aggregatibacter actinomycetemcomitans D11S-1 8537217 YP_003256094.1 CDS D11S_1499 NC_013416.1 1424964 1425404 D identified by Glimmer3; putative; hypothetical protein 1424964..1425404 Aggregatibacter actinomycetemcomitans D11S-1 8537218 YP_003256095.1 CDS D11S_1500 NC_013416.1 1425460 1426734 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 1425460..1426734 Aggregatibacter actinomycetemcomitans D11S-1 8537219 YP_003256096.1 CDS D11S_1501 NC_013416.1 1426793 1427512 D identified by Glimmer3; putative; putative 4'-phosphopantetheinyl transferase 1426793..1427512 Aggregatibacter actinomycetemcomitans D11S-1 8537220 YP_003256097.1 CDS D11S_1502 NC_013416.1 1427608 1428861 D identified by Glimmer3; putative; HflK 1427608..1428861 Aggregatibacter actinomycetemcomitans D11S-1 8537221 YP_003256098.1 CDS D11S_1503 NC_013416.1 1428861 1429748 D identified by Glimmer3; putative; HflC protein 1428861..1429748 Aggregatibacter actinomycetemcomitans D11S-1 8537222 YP_003256099.1 CDS D11S_1504 NC_013416.1 1429881 1430036 R identified by Glimmer3; putative; hypothetical protein complement(1429881..1430036) Aggregatibacter actinomycetemcomitans D11S-1 8537223 YP_003256100.1 CDS D11S_1505 NC_013416.1 1430038 1430367 D identified by Glimmer3; putative; ComE operon protein 1 1430038..1430367 Aggregatibacter actinomycetemcomitans D11S-1 8537224 YP_003256101.1 CDS D11S_1506 NC_013416.1 1430393 1431073 D HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine; putative deoxyribonucleotide triphosphate pyrophosphatase 1430393..1431073 Aggregatibacter actinomycetemcomitans D11S-1 8537225 YP_003256102.1 CDS D11S_1507 NC_013416.1 1431112 1431435 D identified by Glimmer3; putative; protein YbjQ 1431112..1431435 Aggregatibacter actinomycetemcomitans D11S-1 8537226 YP_003256103.1 CDS D11S_1508 NC_013416.1 1431435 1432604 D catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase 1431435..1432604 Aggregatibacter actinomycetemcomitans D11S-1 8537227 YP_003256104.1 CDS D11S_1509 NC_013416.1 1432703 1433359 D Catalyzes D-ribose 5-phosphate --> D-ribulose 5-phosphate in the nonoxidative branch of the pentose phosphate pathway; ribose-5-phosphate isomerase A 1432703..1433359 Aggregatibacter actinomycetemcomitans D11S-1 8537228 YP_003256105.1 CDS D11S_1510 NC_013416.1 1433379 1434611 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 1433379..1434611 Aggregatibacter actinomycetemcomitans D11S-1 8537229 YP_003256106.1 CDS D11S_1511 NC_013416.1 1434620 1434739 D identified by Glimmer3; putative; hypothetical protein 1434620..1434739 Aggregatibacter actinomycetemcomitans D11S-1 8537230 YP_003256107.1 CDS D11S_1512 NC_013416.1 1434921 1435967 D identified by Glimmer3; putative; iron chelatin ABC transporter periplasmic-binding protein 1434921..1435967 Aggregatibacter actinomycetemcomitans D11S-1 8537231 YP_003256108.1 CDS D11S_1513 NC_013416.1 1436157 1437140 D identified by Glimmer3; putative; TRAP dicarboxylate transporter subunit DctM 1436157..1437140 Aggregatibacter actinomycetemcomitans D11S-1 8537232 YP_003256109.1 CDS D11S_1514 NC_013416.1 1437164 1439539 D identified by Glimmer3; putative; hypothetical protein 1437164..1439539 Aggregatibacter actinomycetemcomitans D11S-1 8537233 YP_003256110.1 CDS D11S_1515 NC_013416.1 1439554 1440309 D identified by Glimmer3; putative; D-mannonate oxidoreductase 1439554..1440309 Aggregatibacter actinomycetemcomitans D11S-1 8537234 YP_003256111.1 CDS D11S_1516 NC_013416.1 1440329 1441513 D catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase 1440329..1441513 Aggregatibacter actinomycetemcomitans D11S-1 8537235 YP_003256112.1 CDS D11S_1517 NC_013416.1 1441551 1442108 D identified by Glimmer3; putative; hypothetical protein 1441551..1442108 Aggregatibacter actinomycetemcomitans D11S-1 8537236 YP_003256113.1 CDS D11S_1518 NC_013416.1 1442158 1442481 D identified by Glimmer3; putative; hypothetical protein 1442158..1442481 Aggregatibacter actinomycetemcomitans D11S-1 8537237 YP_003256114.1 CDS D11S_1519 NC_013416.1 1442538 1443428 D identified by Glimmer3; putative; RhaT protein 1442538..1443428 Aggregatibacter actinomycetemcomitans D11S-1 8537238 YP_003256115.1 CDS D11S_1520 NC_013416.1 1443454 1445208 R putative role in sulfate transport across the inner membrane; member of the SulP family of sulfate transporters; seems to mediate transport via sulfate/proton symport; putative sulfate transporter YchM complement(1443454..1445208) Aggregatibacter actinomycetemcomitans D11S-1 8537239 YP_003256116.1 CDS D11S_1522 NC_013416.1 1445639 1448056 D identified by Glimmer3; putative; ATP-dependent protease La 1445639..1448056 Aggregatibacter actinomycetemcomitans D11S-1 8537241 YP_003256117.1 CDS D11S_1523 NC_013416.1 1448118 1449968 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD complement(1448118..1449968) Aggregatibacter actinomycetemcomitans D11S-1 8537242 YP_003256118.1 CDS dnaG NC_013416.1 1450044 1451801 R synthesizes RNA primers at the replication forks; DNA primase complement(1450044..1451801) Aggregatibacter actinomycetemcomitans D11S-1 8537243 YP_003256119.1 CDS rpsU NC_013416.1 1451923 1452138 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(1451923..1452138) Aggregatibacter actinomycetemcomitans D11S-1 8537244 YP_003256120.1 CDS D11S_1526 NC_013416.1 1452173 1452340 D identified by Glimmer3; putative; hypothetical protein 1452173..1452340 Aggregatibacter actinomycetemcomitans D11S-1 8537245 YP_003256121.1 CDS D11S_1527 NC_013416.1 1452363 1453391 D identified by Glimmer3; putative; O-sialoglycoprotein endopeptidase 1452363..1453391 Aggregatibacter actinomycetemcomitans D11S-1 8537246 YP_003256122.1 CDS D11S_1528 NC_013416.1 1453456 1453689 D identified by Glimmer3; putative; hypothetical protein 1453456..1453689 Aggregatibacter actinomycetemcomitans D11S-1 8537247 YP_003256123.1 CDS D11S_1529 NC_013416.1 1453692 1454270 D identified by Glimmer3; putative; thymidine kinase 1453692..1454270 Aggregatibacter actinomycetemcomitans D11S-1 8537248 YP_003256124.1 CDS ligA NC_013416.1 1454338 1456350 R this protein catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction; essential for DNA replication and repair of damaged DNA; similar to ligase LigB; NAD-dependent DNA ligase LigA complement(1454338..1456350) Aggregatibacter actinomycetemcomitans D11S-1 8537249 YP_003256125.1 CDS D11S_1531 NC_013416.1 1456452 1457489 R interacts with cell division protein FitsZ and may be required to anchor septal ring structure; cell division protein ZipA complement(1456452..1457489) Aggregatibacter actinomycetemcomitans D11S-1 8537250 YP_003256126.1 CDS D11S_1532 NC_013416.1 1457629 1458453 D putative role in sulfur assimilation; putative sulfate transport protein CysZ 1457629..1458453 Aggregatibacter actinomycetemcomitans D11S-1 8537251 YP_003256127.1 CDS D11S_1533 NC_013416.1 1458554 1459501 D identified by Glimmer3; putative; cysteine synthase A 1458554..1459501 Aggregatibacter actinomycetemcomitans D11S-1 8537252 YP_003256128.1 CDS D11S_1534 NC_013416.1 1459466 1459579 R identified by Glimmer3; putative; hypothetical protein complement(1459466..1459579) Aggregatibacter actinomycetemcomitans D11S-1 8537253 YP_003256129.1 CDS D11S_1535 NC_013416.1 1459721 1459867 R identified by Glimmer3; putative; hypothetical protein complement(1459721..1459867) Aggregatibacter actinomycetemcomitans D11S-1 8537254 YP_003256130.1 CDS D11S_1536 NC_013416.1 1459943 1460524 R identified by Glimmer3; putative; uracil-DNA glycosylase complement(1459943..1460524) Aggregatibacter actinomycetemcomitans D11S-1 8537255 YP_003256131.1 CDS D11S_1537 NC_013416.1 1460833 1461924 R translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD complement(1460833..1461924) Aggregatibacter actinomycetemcomitans D11S-1 8537256 YP_003256132.1 CDS D11S_1538 NC_013416.1 1462113 1462796 R Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase complement(1462113..1462796) Aggregatibacter actinomycetemcomitans D11S-1 8537257 YP_003256134.1 CDS D11S_1550 NC_013416.1 1469570 1470643 R identified by Glimmer3; putative; undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase complement(1469570..1470643) Aggregatibacter actinomycetemcomitans D11S-1 8537269 YP_003256135.1 CDS D11S_1551 NC_013416.1 1470772 1472055 D Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase 1470772..1472055 Aggregatibacter actinomycetemcomitans D11S-1 8537270 YP_003256136.1 CDS glnD NC_013416.1 1472131 1474722 R identified by Glimmer3; putative; PII uridylyl-transferase complement(1472131..1474722) Aggregatibacter actinomycetemcomitans D11S-1 8537271 YP_003256137.1 CDS D11S_1553 NC_013416.1 1474788 1475588 R catalyzes the removal of N-terminal amino acids from peptides and arylamides; generally Co(II) however activity has been shown for some methionine aminopeptidases with Zn, Fe, or Mn; methionine aminopeptidase complement(1474788..1475588) Aggregatibacter actinomycetemcomitans D11S-1 8537272 YP_003256138.1 CDS D11S_1554 NC_013416.1 1475722 1476063 D essential respiratory protein A; may be involved in the transfer of iron-sulfur clusters; essential for growth using oxygen or alternate electron acceptors; iron-sulfur cluster insertion protein ErpA 1475722..1476063 Aggregatibacter actinomycetemcomitans D11S-1 8537273 YP_003256139.1 CDS D11S_1555 NC_013416.1 1476065 1476277 D identified by Glimmer3; putative; hypothetical protein 1476065..1476277 Aggregatibacter actinomycetemcomitans D11S-1 8537274 YP_003256140.1 CDS D11S_1556 NC_013416.1 1476323 1478716 D identified by Glimmer3; putative; penicillin-binding protein 1B 1476323..1478716 Aggregatibacter actinomycetemcomitans D11S-1 8537275 YP_003256141.1 CDS D11S_1557 NC_013416.1 1479015 1480922 D identified by Glimmer3; putative; high-affinity Fe2+/Pb2+ permease 1479015..1480922 Aggregatibacter actinomycetemcomitans D11S-1 8537276 YP_003256142.1 CDS D11S_1558 NC_013416.1 1480965 1481486 D identified by Glimmer3; putative; periplasmic protein 1480965..1481486 Aggregatibacter actinomycetemcomitans D11S-1 8537277 YP_003256143.1 CDS D11S_1559 NC_013416.1 1481625 1483055 D identified by Glimmer3; putative; integral membrane protein 1481625..1483055 Aggregatibacter actinomycetemcomitans D11S-1 8537278 YP_003256144.1 CDS D11S_1560 NC_013416.1 1483058 1484383 D identified by Glimmer3; putative; membrane protein 1483058..1484383 Aggregatibacter actinomycetemcomitans D11S-1 8537279 YP_003256145.1 CDS D11S_1561 NC_013416.1 1484394 1485509 D identified by Glimmer3; putative; integral membrane protein-permease 1484394..1485509 Aggregatibacter actinomycetemcomitans D11S-1 8537280 YP_003256146.1 CDS D11S_1562 NC_013416.1 1485511 1486182 D identified by Glimmer3; putative; macrolide export ATP-binding/permease MacB 1485511..1486182 Aggregatibacter actinomycetemcomitans D11S-1 8537281 YP_003256147.1 CDS D11S_1563 NC_013416.1 1486172 1486663 D identified by Glimmer3; putative; ResA 1486172..1486663 Aggregatibacter actinomycetemcomitans D11S-1 8537282 YP_003256148.1 CDS D11S_1564 NC_013416.1 1486670 1486981 D identified by Glimmer3; putative; cytochrome c-553 1486670..1486981 Aggregatibacter actinomycetemcomitans D11S-1 8537283 YP_003256149.1 CDS D11S_1565 NC_013416.1 1487309 1487974 D identified by Glimmer3; putative; putative phosphatase 1487309..1487974 Aggregatibacter actinomycetemcomitans D11S-1 8537284 YP_003256150.1 CDS D11S_1566 NC_013416.1 1487980 1488138 R identified by Glimmer3; putative; hypothetical protein complement(1487980..1488138) Aggregatibacter actinomycetemcomitans D11S-1 8537285 YP_003256151.1 CDS D11S_1567 NC_013416.1 1488166 1489314 R identified by Glimmer3; putative; transposase (IS4 family) protein complement(1488166..1489314) Aggregatibacter actinomycetemcomitans D11S-1 8537286 YP_003256152.1 CDS D11S_1568 NC_013416.1 1489414 1490466 R identified by Glimmer3; putative; putative inner membrane protein complement(1489414..1490466) Aggregatibacter actinomycetemcomitans D11S-1 8537287 YP_003256153.1 CDS D11S_1569 NC_013416.1 1490774 1494685 R involved in the post-transcriptional processing of the daa operon mRNA, which encodes proteins involved in fimbrial biogenesis of an enteropathogenic E. coli strain; ATP-dependent RNA helicase HrpA complement(1490774..1494685) Aggregatibacter actinomycetemcomitans D11S-1 8537288 YP_003256154.1 CDS D11S_1570 NC_013416.1 1494682 1495071 R identified by Glimmer3; putative; membrane protein complement(1494682..1495071) Aggregatibacter actinomycetemcomitans D11S-1 8537289 YP_003256155.1 CDS D11S_1571 NC_013416.1 1495072 1495524 R identified by Glimmer3; putative; membrane protein YtwI complement(1495072..1495524) Aggregatibacter actinomycetemcomitans D11S-1 8537290 YP_003256156.1 CDS D11S_1572 NC_013416.1 1495649 1495978 R identified by Glimmer3; putative; putative glutaredoxin-like protein complement(1495649..1495978) Aggregatibacter actinomycetemcomitans D11S-1 8537291 YP_003256157.1 CDS D11S_1573 NC_013416.1 1496320 1497360 R identified by Glimmer3; putative; outer membrane protein A complement(1496320..1497360) Aggregatibacter actinomycetemcomitans D11S-1 8537292 YP_003256158.1 CDS D11S_1574 NC_013416.1 1497846 1500899 D identified by Glimmer3; putative; FAD linked oxidase 1497846..1500899 Aggregatibacter actinomycetemcomitans D11S-1 8537293 YP_003256159.1 CDS D11S_1575 NC_013416.1 1500909 1501331 D identified by Glimmer3; putative; esterase YdiI 1500909..1501331 Aggregatibacter actinomycetemcomitans D11S-1 8537294 YP_003256160.1 CDS hemH NC_013416.1 1501324 1502388 D protoheme ferro-lyase; catalyzes the insertion of a ferrous ion into protoporphyrin IX to form protoheme; involved in protoheme biosynthesis; in some organisms this protein is membrane-associated while in others it is cytosolic; ferrochelatase 1501324..1502388 Aggregatibacter actinomycetemcomitans D11S-1 8537295 YP_003256161.1 CDS tpx NC_013416.1 1502429 1502929 D antioxidant activity; thioredoxin-dependent thiol peroxidase; forms homodimers in solution; shows substrate specificity to alkyl hydroperoxides; periplasmic protein; thiol peroxidase 1502429..1502929 Aggregatibacter actinomycetemcomitans D11S-1 8537296 YP_003256162.1 CDS nagA NC_013416.1 1503134 1504279 R catalyzes the formation of glucosamine 6-phosphate from N-acetylglucosamine 6-phosphate; N-acetylglucosamine-6-phosphate deacetylase complement(1503134..1504279) Aggregatibacter actinomycetemcomitans D11S-1 8537297 YP_003256163.1 CDS nagB NC_013416.1 1504335 1505138 R catalyzes the reversible formation of fructose 6-phosphate from glucosamine 6-phosphate; glucosamine-6-phosphate deaminase complement(1504335..1505138) Aggregatibacter actinomycetemcomitans D11S-1 8537298 YP_003256164.1 CDS D11S_1580 NC_013416.1 1505293 1506171 R catalyzes the formation of pyruvate and N-acetylmannosamine from N-acetylneuraminic acid; N-acetylneuraminate lyase complement(1505293..1506171) Aggregatibacter actinomycetemcomitans D11S-1 8537299 YP_003256165.1 CDS D11S_1581 NC_013416.1 1506181 1507050 R identified by Glimmer3; putative; N-acetylmannosamine kinase complement(1506181..1507050) Aggregatibacter actinomycetemcomitans D11S-1 8537300 YP_003256166.1 CDS D11S_1582 NC_013416.1 1507060 1507947 R catalyzes the phosphorylation of the N-acetylmannosamine (ManNAc) liberated from N-acetyl-neuraminic acid by the nanA protein; N-acetylmannosamine kinase complement(1507060..1507947) Aggregatibacter actinomycetemcomitans D11S-1 8537301 YP_003256167.1 CDS D11S_1583 NC_013416.1 1507961 1508662 R Converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate; N-acetylmannosamine-6-phosphate 2-epimerase complement(1507961..1508662) Aggregatibacter actinomycetemcomitans D11S-1 8537302 YP_003256168.1 CDS D11S_1584 NC_013416.1 1508903 1509889 D identified by Glimmer3; putative; sialic acid-binding periplasmic protein SiaP 1508903..1509889 Aggregatibacter actinomycetemcomitans D11S-1 8537303 YP_003256169.1 CDS D11S_1585 NC_013416.1 1509953 1511803 D identified by Glimmer3; putative; hypothetical protein 1509953..1511803 Aggregatibacter actinomycetemcomitans D11S-1 8537304 YP_003256170.1 CDS D11S_1586 NC_013416.1 1511942 1513072 D identified by Glimmer3; putative; N-acetylneuraminic acid mutarotase 1511942..1513072 Aggregatibacter actinomycetemcomitans D11S-1 8537305 YP_003256171.1 CDS D11S_1587 NC_013416.1 1513322 1514788 D identified by Glimmer3; putative; PTS system N-acetylglucosamine-specific transporter subunit IIBC 1513322..1514788 Aggregatibacter actinomycetemcomitans D11S-1 8537306 YP_003256172.1 CDS D11S_1588 NC_013416.1 1515464 1516534 R identified by Glimmer3; putative; outer membrane protein A complement(1515464..1516534) Aggregatibacter actinomycetemcomitans D11S-1 8537307 YP_003256173.1 CDS D11S_1589 NC_013416.1 1516761 1518803 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B complement(1516761..1518803) Aggregatibacter actinomycetemcomitans D11S-1 8537308 YP_003256174.1 CDS D11S_1591 NC_013416.1 1519415 1520446 R identified by Glimmer3; putative; high-affinity nickel-transporter complement(1519415..1520446) Aggregatibacter actinomycetemcomitans D11S-1 8537310 YP_003256175.1 CDS D11S_1592 NC_013416.1 1520461 1521126 R identified by Glimmer3; putative; hypothetical protein complement(1520461..1521126) Aggregatibacter actinomycetemcomitans D11S-1 8537311 YP_003256176.1 CDS D11S_1593 NC_013416.1 1521144 1521290 R identified by Glimmer3; putative; hypothetical protein complement(1521144..1521290) Aggregatibacter actinomycetemcomitans D11S-1 8537312 YP_003256177.1 CDS D11S_1594 NC_013416.1 1521529 1523175 D ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein 1521529..1523175 Aggregatibacter actinomycetemcomitans D11S-1 8537313 YP_003256178.1 CDS D11S_1595 NC_013416.1 1523279 1524166 R identified by Glimmer3; putative; outer membrane protein 100 complement(1523279..1524166) Aggregatibacter actinomycetemcomitans D11S-1 8537314 YP_003256179.1 CDS D11S_1596 NC_013416.1 1524669 1526567 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B 1524669..1526567 Aggregatibacter actinomycetemcomitans D11S-1 8537315 YP_003256180.1 CDS D11S_1597 NC_013416.1 1526920 1527096 D identified by Glimmer3; putative; hypothetical protein 1526920..1527096 Aggregatibacter actinomycetemcomitans D11S-1 8537316 YP_003256181.1 CDS D11S_1598 NC_013416.1 1527104 1529359 D decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A 1527104..1529359 Aggregatibacter actinomycetemcomitans D11S-1 8537317 YP_003256182.1 CDS D11S_1599 NC_013416.1 1529643 1530254 D identified by Glimmer3; putative; glutathione S-transferase 1529643..1530254 Aggregatibacter actinomycetemcomitans D11S-1 8537318 YP_003256183.1 CDS D11S_1600 NC_013416.1 1530304 1531014 R identified by Glimmer3; putative; Sel1 domain-containing protein complement(1530304..1531014) Aggregatibacter actinomycetemcomitans D11S-1 8537319 YP_003256184.1 CDS D11S_1601 NC_013416.1 1531020 1531736 R identified by Glimmer3; putative; hypothetical protein complement(1531020..1531736) Aggregatibacter actinomycetemcomitans D11S-1 8537320 YP_003256185.1 CDS D11S_1602 NC_013416.1 1531838 1532191 D identified by Glimmer3; putative; putative translation initiation inhibitor 1531838..1532191 Aggregatibacter actinomycetemcomitans D11S-1 8537321 YP_003256186.1 CDS D11S_1603 NC_013416.1 1532261 1533106 R identified by Glimmer3; putative; hypothetical protein complement(1532261..1533106) Aggregatibacter actinomycetemcomitans D11S-1 8537322 YP_003256187.1 CDS D11S_1604 NC_013416.1 1533324 1533779 R identified by Glimmer3; putative; hypothetical protein complement(1533324..1533779) Aggregatibacter actinomycetemcomitans D11S-1 8537323 YP_003256188.1 CDS D11S_1605 NC_013416.1 1533782 1534552 R identified by Glimmer3; putative; Ribonuclease III complement(1533782..1534552) Aggregatibacter actinomycetemcomitans D11S-1 8537324 YP_003256189.1 CDS D11S_1606 NC_013416.1 1534878 1535768 R identified by Glimmer3; putative; hypothetical protein complement(1534878..1535768) Aggregatibacter actinomycetemcomitans D11S-1 8537325 YP_003256190.1 CDS D11S_1607 NC_013416.1 1535771 1536295 R identified by Glimmer3; putative; DNA polymerase III subunit tau complement(1535771..1536295) Aggregatibacter actinomycetemcomitans D11S-1 8537326 YP_003256191.1 CDS D11S_1608 NC_013416.1 1536412 1537815 R identified by Glimmer3; putative; hypothetical protein complement(1536412..1537815) Aggregatibacter actinomycetemcomitans D11S-1 8537327 YP_003256192.1 CDS D11S_1609 NC_013416.1 1537848 1538459 R identified by Glimmer3; putative; adenine phosphoribosyltransferase complement(1537848..1538459) Aggregatibacter actinomycetemcomitans D11S-1 8537328 YP_003256193.1 CDS D11S_1610 NC_013416.1 1538481 1539437 R Transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase complement(1538481..1539437) Aggregatibacter actinomycetemcomitans D11S-1 8537329 YP_003256194.1 CDS D11S_1611 NC_013416.1 1539553 1540320 R identified by Glimmer3; putative; inner membrane protein YfcA complement(1539553..1540320) Aggregatibacter actinomycetemcomitans D11S-1 8537330 YP_003256195.1 CDS mepA NC_013416.1 1540324 1541196 R D-alanyl-D-alanine endopeptidase; functions in hydrolyzing cell wall peptidoglycan; similar to LAS metallopeptidases; forms a dimer in periplasm; penicillin-insensitive murein endopeptidase complement(1540324..1541196) Aggregatibacter actinomycetemcomitans D11S-1 8537331 YP_003256196.1 CDS D11S_1613 NC_013416.1 1541218 1542291 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1541218..1542291) Aggregatibacter actinomycetemcomitans D11S-1 8537332 YP_003256197.1 CDS D11S_1614 NC_013416.1 1542313 1545636 R small mechanosensitive ion channel (MscS) that opens in response to stretch forces in the membrane lipid bilayer; maintains cell turgor through accumulation and release of potassium; large protein class of MscS; potassium efflux protein KefA complement(1542313..1545636) Aggregatibacter actinomycetemcomitans D11S-1 8537333 YP_003256198.1 CDS D11S_1615 NC_013416.1 1545645 1547060 R identified by Glimmer3; putative; O-succinylbenzoic acid--CoA ligase complement(1545645..1547060) Aggregatibacter actinomycetemcomitans D11S-1 8537334 YP_003256199.1 CDS D11S_1616 NC_013416.1 1547066 1547683 R negative modulator of the initiation of chromosome replication; replication initiation regulator SeqA complement(1547066..1547683) Aggregatibacter actinomycetemcomitans D11S-1 8537335 YP_003256200.1 CDS D11S_1617 NC_013416.1 1547770 1548570 D identified by Glimmer3; putative; esterase YbfF 1547770..1548570 Aggregatibacter actinomycetemcomitans D11S-1 8537336 YP_003256201.1 CDS D11S_1618 NC_013416.1 1549002 1549526 D An electron-transfer protein; flavodoxin binds one FMN molecule, which serves as a redox-active prosthetic group; flavodoxin FldA 1549002..1549526 Aggregatibacter actinomycetemcomitans D11S-1 8537337 YP_003256202.1 CDS D11S_1619 NC_013416.1 1549545 1549985 D identified by Glimmer3; putative; ferric uptake regulation protein 1549545..1549985 Aggregatibacter actinomycetemcomitans D11S-1 8537338 YP_003256203.1 CDS D11S_1620 NC_013416.1 1550153 1552816 D negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A 1550153..1552816 Aggregatibacter actinomycetemcomitans D11S-1 8537339 YP_003256204.1 CDS D11S_1621 NC_013416.1 1552884 1553234 D identified by Glimmer3; putative; hypothetical protein 1552884..1553234 Aggregatibacter actinomycetemcomitans D11S-1 8537340 YP_003256205.1 CDS D11S_1622 NC_013416.1 1553268 1553585 R identified by Glimmer3; putative; translation initiation factor Sui1 complement(1553268..1553585) Aggregatibacter actinomycetemcomitans D11S-1 8537341 YP_003256206.1 CDS D11S_1623 NC_013416.1 1553591 1554283 R type 1 subfamily; involved in last step of pyrimidine biosynthesis; converts orotidine 5'-phosphate to UMP and carbon dioxide; OMP decarboxylase; OMPDCase; OMPdecase; orotidine 5'-phosphate decarboxylase complement(1553591..1554283) Aggregatibacter actinomycetemcomitans D11S-1 8537342 YP_003256207.1 CDS D11S_1624 NC_013416.1 1554313 1555503 R identified by Glimmer3; putative; hypothetical protein complement(1554313..1555503) Aggregatibacter actinomycetemcomitans D11S-1 8537343 YP_003256208.1 CDS D11S_1625 NC_013416.1 1555503 1555799 R identified by Glimmer3; putative; hypothetical protein complement(1555503..1555799) Aggregatibacter actinomycetemcomitans D11S-1 8537344 YP_003256209.1 CDS D11S_1626 NC_013416.1 1555898 1556185 R identified by Glimmer3; putative; integration host factor subunit beta complement(1555898..1556185) Aggregatibacter actinomycetemcomitans D11S-1 8537345 YP_003256210.1 CDS rpsA NC_013416.1 1556247 1557893 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(1556247..1557893) Aggregatibacter actinomycetemcomitans D11S-1 8537346 YP_003256211.1 CDS D11S_1628 NC_013416.1 1557991 1558668 R identified by Glimmer3; putative; cytidylate kinase complement(1557991..1558668) Aggregatibacter actinomycetemcomitans D11S-1 8537347 YP_003256212.1 CDS D11S_1629 NC_013416.1 1558661 1559554 R identified by Glimmer3; putative; coproporphyrinogen III oxidase complement(1558661..1559554) Aggregatibacter actinomycetemcomitans D11S-1 8537348 YP_003256213.1 CDS D11S_1630 NC_013416.1 1559847 1562213 D identified by Glimmer3; putative; TonB-dependent receptor 1559847..1562213 Aggregatibacter actinomycetemcomitans D11S-1 8537349 YP_003256214.1 CDS D11S_1631 NC_013416.1 1562291 1565065 D identified by Glimmer3; putative; PqqL 1562291..1565065 Aggregatibacter actinomycetemcomitans D11S-1 8537350 YP_003256215.1 CDS D11S_1632 NC_013416.1 1565132 1565464 R identified by Glimmer3; putative; branched-chain amino acid transport protein AzlD complement(1565132..1565464) Aggregatibacter actinomycetemcomitans D11S-1 8537351 YP_003256216.1 CDS D11S_1633 NC_013416.1 1565465 1566076 R identified by Glimmer3; putative; azaleucine resistance protein AzlC complement(1565465..1566076) Aggregatibacter actinomycetemcomitans D11S-1 8537352 YP_003256217.1 CDS D11S_1634 NC_013416.1 1566073 1566192 R identified by Glimmer3; putative; hypothetical protein complement(1566073..1566192) Aggregatibacter actinomycetemcomitans D11S-1 8537353 YP_003256218.1 CDS D11S_1635 NC_013416.1 1566197 1567129 R identified by Glimmer3; putative; MetR complement(1566197..1567129) Aggregatibacter actinomycetemcomitans D11S-1 8537354 YP_003256219.1 CDS D11S_1636 NC_013416.1 1567429 1569702 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5-methyltetrahydropteroyltriglutamate-- homocysteine S-methyltransferase 1567429..1569702 Aggregatibacter actinomycetemcomitans D11S-1 8537355 YP_003256220.1 CDS D11S_1637 NC_013416.1 1570133 1572100 R identified by Glimmer3; putative; putative DEAD/DEAH box helicase complement(1570133..1572100) Aggregatibacter actinomycetemcomitans D11S-1 8537356 YP_003256221.1 CDS D11S_1638 NC_013416.1 1572197 1572376 R identified by Glimmer3; putative; CRISPR-associated helicase Cas3 domain-containing protein complement(1572197..1572376) Aggregatibacter actinomycetemcomitans D11S-1 8537357 YP_003256222.1 CDS D11S_1639 NC_013416.1 1572930 1573592 D identified by Glimmer3; putative; inner membrane protein YccA 1572930..1573592 Aggregatibacter actinomycetemcomitans D11S-1 8537358 YP_003256223.1 CDS D11S_1640 NC_013416.1 1573678 1574007 D identified by Glimmer3; putative; sulfurtransferase TusE 1573678..1574007 Aggregatibacter actinomycetemcomitans D11S-1 8537359 YP_003256224.1 CDS D11S_1641 NC_013416.1 1574105 1574986 D identified by Glimmer3; putative; AfeA 1574105..1574986 Aggregatibacter actinomycetemcomitans D11S-1 8537360 YP_003256225.1 CDS D11S_1642 NC_013416.1 1574986 1575876 D identified by Glimmer3; putative; AfeB 1574986..1575876 Aggregatibacter actinomycetemcomitans D11S-1 8537361 YP_003256226.1 CDS D11S_1643 NC_013416.1 1575876 1576733 D identified by Glimmer3; putative; AfeC 1575876..1576733 Aggregatibacter actinomycetemcomitans D11S-1 8537362 YP_003256227.1 CDS D11S_1644 NC_013416.1 1576730 1577578 D identified by Glimmer3; putative; acylphosphatase 1576730..1577578 Aggregatibacter actinomycetemcomitans D11S-1 8537363 YP_003256228.1 CDS D11S_1645 NC_013416.1 1577553 1577825 R catalyzes the hydrolysis of acylphosphate; acylphosphatase complement(1577553..1577825) Aggregatibacter actinomycetemcomitans D11S-1 8537364 YP_003256229.1 CDS D11S_1646 NC_013416.1 1577970 1578644 D identified by Glimmer3; putative; hypothetical protein 1577970..1578644 Aggregatibacter actinomycetemcomitans D11S-1 8537365 YP_003256230.1 CDS mgsA NC_013416.1 1578707 1579165 D catalyzes the formation of methylglyoxal from glycerone phosphate; methylglyoxal synthase 1578707..1579165 Aggregatibacter actinomycetemcomitans D11S-1 8537366 YP_003256231.1 CDS D11S_1648 NC_013416.1 1579165 1579638 D identified by Glimmer3; putative; hypothetical protein 1579165..1579638 Aggregatibacter actinomycetemcomitans D11S-1 8537367 YP_003256232.1 CDS D11S_1649 NC_013416.1 1579647 1581788 D identified by Glimmer3; putative; hypothetical protein 1579647..1581788 Aggregatibacter actinomycetemcomitans D11S-1 8537368 YP_003256233.1 CDS D11S_1650 NC_013416.1 1581785 1582117 R identified by Glimmer3; putative; hypothetical protein complement(1581785..1582117) Aggregatibacter actinomycetemcomitans D11S-1 8537369 YP_003256234.1 CDS D11S_1651 NC_013416.1 1582131 1582292 R identified by Glimmer3; putative; hypothetical protein complement(1582131..1582292) Aggregatibacter actinomycetemcomitans D11S-1 8537370 YP_003256235.1 CDS D11S_1652 NC_013416.1 1582355 1583305 D involved in methylation of ribosomal protein L3; N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 1582355..1583305 Aggregatibacter actinomycetemcomitans D11S-1 8537371 YP_003256236.1 CDS D11S_1653 NC_013416.1 1583472 1584416 R identified by Glimmer3; putative; transketolase, central region complement(1583472..1584416) Aggregatibacter actinomycetemcomitans D11S-1 8537372 YP_003256237.1 CDS D11S_1654 NC_013416.1 1584406 1585230 R identified by Glimmer3; putative; transketolase, N- subunit complement(1584406..1585230) Aggregatibacter actinomycetemcomitans D11S-1 8537373 YP_003256238.1 CDS D11S_1655 NC_013416.1 1585240 1586448 R identified by Glimmer3; putative; ascorbate-specific PTS system enzyme IIC complement(1585240..1586448) Aggregatibacter actinomycetemcomitans D11S-1 8537374 YP_003256239.1 CDS D11S_1656 NC_013416.1 1586457 1586594 R identified by Glimmer3; putative; ascorbate-specific PTS system enzyme IIC complement(1586457..1586594) Aggregatibacter actinomycetemcomitans D11S-1 8537375 YP_003256240.1 CDS D11S_1657 NC_013416.1 1586611 1586880 R identified by Glimmer3; putative; PTS system galactitol-specific transporter subunit IIB complement(1586611..1586880) Aggregatibacter actinomycetemcomitans D11S-1 8537376 YP_003256241.1 CDS D11S_1658 NC_013416.1 1587110 1588108 R identified by Glimmer3; putative; hypothetical protein complement(1587110..1588108) Aggregatibacter actinomycetemcomitans D11S-1 8537377 YP_003256242.1 CDS D11S_1659 NC_013416.1 1588369 1590312 R Uup; in Escherichia coli this cytoplasmic protein was shown to contain ATPase activity; mutations in this gene affect RecA-independent excision of transposons and affects Mu bacteriophage growth; ABC transporter ATPase complement(1588369..1590312) Aggregatibacter actinomycetemcomitans D11S-1 8537378 YP_003256243.1 CDS D11S_1660 NC_013416.1 1590354 1591706 R dGTPase family type 2 subfamily; presumably hydrolyzes dGTP to deoxyguanosine and triphosphate; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(1590354..1591706) Aggregatibacter actinomycetemcomitans D11S-1 8537379 YP_003256244.1 CDS D11S_1661 NC_013416.1 1591708 1592400 R identified by Glimmer3; putative; deoxyguanosinetriphosphate triphosphohydrolase-like protein complement(1591708..1592400) Aggregatibacter actinomycetemcomitans D11S-1 8537380 YP_003256245.1 CDS D11S_1662 NC_013416.1 1592400 1592810 R identified by Glimmer3; putative; hypothetical protein complement(1592400..1592810) Aggregatibacter actinomycetemcomitans D11S-1 8537381 YP_003256246.1 CDS D11S_1664 NC_013416.1 1593229 1593729 D identified by Glimmer3; putative; protein ParB 1593229..1593729 Aggregatibacter actinomycetemcomitans D11S-1 8537383 YP_003256247.1 CDS D11S_1665 NC_013416.1 1593735 1594931 D identified by Glimmer3; putative; aminotransferase, class-V 1593735..1594931 Aggregatibacter actinomycetemcomitans D11S-1 8537384 YP_003256248.1 CDS D11S_1666 NC_013416.1 1594928 1595308 D identified by Glimmer3; putative; Fe-S metabolism associated domain subfamily 1594928..1595308 Aggregatibacter actinomycetemcomitans D11S-1 8537385 YP_003256249.1 CDS D11S_1667 NC_013416.1 1595352 1596782 R catalyzes the phosphorylation of D-glycero-D-manno-heptose 7-phosphate to form D,D-heptose-1,7-bisphosphate and catalyzes transfer of ADP to D-glycero-D-manno-heptose 1-phosphate forming ADP-D,D-heptose; bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase complement(1595352..1596782) Aggregatibacter actinomycetemcomitans D11S-1 8537386 YP_003256250.1 CDS D11S_1668 NC_013416.1 1596896 1597831 D Acylates the intermediate (KDO)2-lipid IVA to form (KDO)2-(lauroyl)-lipid IVA; lipid A biosynthesis lauroyl acyltransferase 1596896..1597831 Aggregatibacter actinomycetemcomitans D11S-1 8537387 YP_003256251.1 CDS D11S_1669 NC_013416.1 1597889 1598452 R identified by Glimmer3; putative; TorD protein complement(1597889..1598452) Aggregatibacter actinomycetemcomitans D11S-1 8537388 YP_003256252.1 CDS D11S_1670 NC_013416.1 1598452 1599063 R identified by Glimmer3; putative; NAD dehydrogenase complement(1598452..1599063) Aggregatibacter actinomycetemcomitans D11S-1 8537389 YP_003256253.1 CDS D11S_1671 NC_013416.1 1599072 1599518 R identified by Glimmer3; putative; nodulation efficiency protein D complement(1599072..1599518) Aggregatibacter actinomycetemcomitans D11S-1 8537390 YP_003256254.1 CDS D11S_1672 NC_013416.1 1599542 1600468 R identified by Glimmer3; putative; HflC protein complement(1599542..1600468) Aggregatibacter actinomycetemcomitans D11S-1 8537391 YP_003256255.1 CDS D11S_1673 NC_013416.1 1600990 1601811 R identified by Glimmer3; putative; putative glucanotransferase complement(1600990..1601811) Aggregatibacter actinomycetemcomitans D11S-1 8537392 YP_003256256.1 CDS D11S_1674 NC_013416.1 1602320 1602511 D identified by Glimmer3; putative; hypothetical protein 1602320..1602511 Aggregatibacter actinomycetemcomitans D11S-1 8537393 YP_003256257.1 CDS D11S_1675 NC_013416.1 1602584 1603006 R identified by Glimmer3; putative; hypothetical protein complement(1602584..1603006) Aggregatibacter actinomycetemcomitans D11S-1 8537394 YP_003256258.1 CDS D11S_1676 NC_013416.1 1603613 1604995 D identified by Glimmer3; putative; cytochrome c peroxidase 1603613..1604995 Aggregatibacter actinomycetemcomitans D11S-1 8537395 YP_003256259.1 CDS D11S_1677 NC_013416.1 1605083 1606240 R identified by Glimmer3; putative; ribonuclease D complement(1605083..1606240) Aggregatibacter actinomycetemcomitans D11S-1 8537396 YP_003256260.1 CDS D11S_1678 NC_013416.1 1606323 1607999 R Activates fatty acids by binding to coenzyme A; long-chain-fatty-acid--CoA ligase complement(1606323..1607999) Aggregatibacter actinomycetemcomitans D11S-1 8537397 YP_003256261.1 CDS D11S_1679 NC_013416.1 1608042 1608599 R identified by Glimmer3; putative; outer membrane protein complement(1608042..1608599) Aggregatibacter actinomycetemcomitans D11S-1 8537398 YP_003256262.1 CDS D11S_1680 NC_013416.1 1608632 1609354 R identified by Glimmer3; putative; putative M22 peptidase-like protein YeaZ complement(1608632..1609354) Aggregatibacter actinomycetemcomitans D11S-1 8537399 YP_003256263.1 CDS D11S_1681 NC_013416.1 1609357 1611294 R identified by Glimmer3; putative; ATP-dependent helicase, dexd family complement(1609357..1611294) Aggregatibacter actinomycetemcomitans D11S-1 8537400 YP_003256264.1 CDS D11S_1682 NC_013416.1 1611370 1612188 D identified by Glimmer3; putative; aldose 1-epimerase 1611370..1612188 Aggregatibacter actinomycetemcomitans D11S-1 8537401 YP_003256265.1 CDS D11S_1683 NC_013416.1 1612598 1613455 D identified by Glimmer3; putative; thioredoxin domain-containing protein 1612598..1613455 Aggregatibacter actinomycetemcomitans D11S-1 8537402 YP_003256266.1 CDS D11S_1684 NC_013416.1 1613515 1614468 D identified by Glimmer3; putative; thioredoxin-disulfide reductase 1613515..1614468 Aggregatibacter actinomycetemcomitans D11S-1 8537403 YP_003256267.1 CDS D11S_1685 NC_013416.1 1614574 1616337 D in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 1614574..1616337 Aggregatibacter actinomycetemcomitans D11S-1 8537404 YP_003256268.1 CDS D11S_1686 NC_013416.1 1616337 1618070 D in Escherichia coli the CydCD ABC transporter exports cysteine and glutathione into the periplasm in order to maintain redox balance; important for cytochrome bd and c; cysteine/glutathione ABC transporter membrane/ATP-binding protein 1616337..1618070 Aggregatibacter actinomycetemcomitans D11S-1 8537405 YP_003256269.1 CDS D11S_1687 NC_013416.1 1618453 1618581 R identified by Glimmer3; putative; hypothetical protein complement(1618453..1618581) Aggregatibacter actinomycetemcomitans D11S-1 8537406 YP_003256270.1 CDS D11S_1688 NC_013416.1 1618578 1619363 R identified by Glimmer3; putative; 30S ribosomal protein S15 complement(1618578..1619363) Aggregatibacter actinomycetemcomitans D11S-1 8537407 YP_003256271.1 CDS D11S_1689 NC_013416.1 1619384 1620019 R identified by Glimmer3; putative; lipoprotein complement(1619384..1620019) Aggregatibacter actinomycetemcomitans D11S-1 8537408 YP_003256272.1 CDS D11S_1690 NC_013416.1 1620107 1620691 D identified by Glimmer3; putative; outer-membrane lipoprotein carrier protein 1620107..1620691 Aggregatibacter actinomycetemcomitans D11S-1 8537409 YP_003256273.1 CDS D11S_1691 NC_013416.1 1621469 1622383 R catalyzes the formation of N-acetyl-D-glucosamine-6-phosphate from N-acetyl-D-glucosamine; N-acetyl-D-glucosamine kinase complement(1621469..1622383) Aggregatibacter actinomycetemcomitans D11S-1 8537410 YP_003256274.1 CDS D11S_1692 NC_013416.1 1622433 1623161 R identified by Glimmer3; putative; phosphatidylglycerophosphatase B complement(1622433..1623161) Aggregatibacter actinomycetemcomitans D11S-1 8537411 YP_003256275.1 CDS ribA NC_013416.1 1623250 1623903 D catalyzes the conversion of GTP to formate and 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine and diphosphate; GTP cyclohydrolase II 1623250..1623903 Aggregatibacter actinomycetemcomitans D11S-1 8537412 YP_003256276.1 CDS D11S_1694 NC_013416.1 1624182 1624922 D identified by Glimmer3; putative; hypothetical protein 1624182..1624922 Aggregatibacter actinomycetemcomitans D11S-1 8537413 YP_003256277.1 CDS D11S_1695 NC_013416.1 1625084 1625506 R identified by Glimmer3; putative; dTDP-glucose 4,6-dehydratase complement(1625084..1625506) Aggregatibacter actinomycetemcomitans D11S-1 8537414 YP_003256278.1 CDS D11S_1696 NC_013416.1 1625569 1626111 R identified by Glimmer3; putative; dTDP-glucose 4,6-dehydratase complement(1625569..1626111) Aggregatibacter actinomycetemcomitans D11S-1 8537415 YP_003256279.1 CDS D11S_1697 NC_013416.1 1626136 1626930 R identified by Glimmer3; putative; hypothetical protein complement(1626136..1626930) Aggregatibacter actinomycetemcomitans D11S-1 8537416 YP_003256280.1 CDS D11S_1698 NC_013416.1 1626930 1627733 R removes the damaged DNA at cytosines and guanines by cleaving on the 3' side of the AP site by a beta-elimination reaction; exonuclease III complement(1626930..1627733) Aggregatibacter actinomycetemcomitans D11S-1 8537417 YP_003256281.1 CDS D11S_1699 NC_013416.1 1628274 1629692 R identified by Glimmer3; putative; hypothetical protein complement(1628274..1629692) Aggregatibacter actinomycetemcomitans D11S-1 8537418 YP_003256282.1 CDS D11S_1700 NC_013416.1 1629655 1630611 R identified by Glimmer3; putative; hypothetical protein complement(1629655..1630611) Aggregatibacter actinomycetemcomitans D11S-1 8537419 YP_003256283.1 CDS D11S_1701 NC_013416.1 1630621 1631493 R identified by Glimmer3; putative; glycosyltransferase complement(1630621..1631493) Aggregatibacter actinomycetemcomitans D11S-1 8537420 YP_003256284.1 CDS D11S_1702 NC_013416.1 1631551 1632585 R identified by Glimmer3; putative; exopolysaccharide production protein EXOZ complement(1631551..1632585) Aggregatibacter actinomycetemcomitans D11S-1 8537421 YP_003256285.1 CDS D11S_1703 NC_013416.1 1632589 1633401 R identified by Glimmer3; putative; hypothetical protein complement(1632589..1633401) Aggregatibacter actinomycetemcomitans D11S-1 8537422 YP_003256286.1 CDS D11S_1704 NC_013416.1 1633406 1635304 R identified by Glimmer3; putative; lipopolysaccharide biosynthesis protein complement(1633406..1635304) Aggregatibacter actinomycetemcomitans D11S-1 8537423 YP_003256287.1 CDS D11S_1705 NC_013416.1 1635312 1636055 R identified by Glimmer3; putative; teichoic acids export ATP-binding protein TagH complement(1635312..1636055) Aggregatibacter actinomycetemcomitans D11S-1 8537424 YP_003256288.1 CDS D11S_1706 NC_013416.1 1636061 1636846 R identified by Glimmer3; putative; ABC transporter integral membrane subunit complement(1636061..1636846) Aggregatibacter actinomycetemcomitans D11S-1 8537425 YP_003256289.1 CDS D11S_1707 NC_013416.1 1636858 1637400 R identified by Glimmer3; putative; hypothetical protein complement(1636858..1637400) Aggregatibacter actinomycetemcomitans D11S-1 8537426 YP_003256290.1 CDS D11S_1708 NC_013416.1 1637403 1638287 R identified by Glimmer3; putative; hypothetical protein complement(1637403..1638287) Aggregatibacter actinomycetemcomitans D11S-1 8537427 YP_003256291.1 CDS D11S_1709 NC_013416.1 1638289 1639161 R identified by Glimmer3; putative; hypothetical protein complement(1638289..1639161) Aggregatibacter actinomycetemcomitans D11S-1 8537428 YP_003256292.1 CDS D11S_1710 NC_013416.1 1639239 1640306 R identified by Glimmer3; putative; hypothetical protein complement(1639239..1640306) Aggregatibacter actinomycetemcomitans D11S-1 8537429 YP_003256293.1 CDS D11S_1711 NC_013416.1 1640377 1641507 R identified by Glimmer3; putative; lytic transglycosylase complement(1640377..1641507) Aggregatibacter actinomycetemcomitans D11S-1 8537430 YP_003256294.1 CDS D11S_1712 NC_013416.1 1641509 1642318 R identified by Glimmer3; putative; amylovoran biosynthesis glycosyltransferase AmsE complement(1641509..1642318) Aggregatibacter actinomycetemcomitans D11S-1 8537431 YP_003256295.1 CDS D11S_1713 NC_013416.1 1642387 1643268 R identified by Glimmer3; putative; WcaA protein complement(1642387..1643268) Aggregatibacter actinomycetemcomitans D11S-1 8537432 YP_003256296.1 CDS D11S_1714 NC_013416.1 1643268 1644461 R identified by Glimmer3; putative; hypothetical protein complement(1643268..1644461) Aggregatibacter actinomycetemcomitans D11S-1 8537433 YP_003256297.1 CDS D11S_1715 NC_013416.1 1644470 1645246 R identified by Glimmer3; putative; hypothetical protein complement(1644470..1645246) Aggregatibacter actinomycetemcomitans D11S-1 8537434 YP_003256298.1 CDS D11S_1716 NC_013416.1 1645377 1646909 D identified by Glimmer3; putative; polysaccharide biosynthesis protein 1645377..1646909 Aggregatibacter actinomycetemcomitans D11S-1 8537435 YP_003256299.1 CDS D11S_1717 NC_013416.1 1646906 1647862 D identified by Glimmer3; putative; polysaccharide pyruvyl transferase YvfF 1646906..1647862 Aggregatibacter actinomycetemcomitans D11S-1 8537436 YP_003256300.1 CDS D11S_1718 NC_013416.1 1647971 1648222 D identified by Glimmer3; putative; Prevent-host-death protein 1647971..1648222 Aggregatibacter actinomycetemcomitans D11S-1 8537437 YP_003256301.1 CDS D11S_1719 NC_013416.1 1648219 1648473 D identified by Glimmer3; putative; toxin 1648219..1648473 Aggregatibacter actinomycetemcomitans D11S-1 8537438 YP_003256302.1 CDS D11S_1720 NC_013416.1 1648486 1649229 D identified by Glimmer3; putative; molybdate ABC transporter permease 1648486..1649229 Aggregatibacter actinomycetemcomitans D11S-1 8537439 YP_003256303.1 CDS D11S_1721 NC_013416.1 1649202 1649363 D identified by Glimmer3; putative; hypothetical protein 1649202..1649363 Aggregatibacter actinomycetemcomitans D11S-1 8537440 YP_003256304.1 CDS D11S_1722 NC_013416.1 1649523 1650233 D catalyzes the formation of a phosphodiester at the site of a single-strand break in duplex DNA; DNA ligase 1649523..1650233 Aggregatibacter actinomycetemcomitans D11S-1 8537441 YP_003256305.1 CDS uvrD NC_013416.1 1650366 1652540 R unwinds DNA duplexes with 3' to 5' polarity with respect to the bound strand and initiates unwinding most effectively when a single-stranded region is present; involved in the post-incision events of nucleotide excision repair and methyl-directed mismatch repair.; DNA-dependent helicase II complement(1650366..1652540) Aggregatibacter actinomycetemcomitans D11S-1 8537442 YP_003256306.1 CDS D11S_1724 NC_013416.1 1652708 1654057 R identified by Glimmer3; putative; gluconate permease complement(1652708..1654057) Aggregatibacter actinomycetemcomitans D11S-1 8537443 YP_003256307.1 CDS D11S_1725 NC_013416.1 1654275 1654793 D identified by Glimmer3; putative; shikimate kinase 1654275..1654793 Aggregatibacter actinomycetemcomitans D11S-1 8537444 YP_003256308.1 CDS D11S_1726 NC_013416.1 1654790 1654912 R identified by Glimmer3; putative; hypothetical protein complement(1654790..1654912) Aggregatibacter actinomycetemcomitans D11S-1 8537445 YP_003256309.1 CDS D11S_1727 NC_013416.1 1654863 1655861 R identified by Glimmer3; putative; PurR protein complement(1654863..1655861) Aggregatibacter actinomycetemcomitans D11S-1 8537446 YP_003256310.1 CDS D11S_1728 NC_013416.1 1655910 1656734 R involved in the production or activity of formate dehydrogenase-H which is active when nitrate is not present during anaerobic growth; formate dehydrogenase accessory protein complement(1655910..1656734) Aggregatibacter actinomycetemcomitans D11S-1 8537447 YP_003256311.1 CDS D11S_1729 NC_013416.1 1657042 1657194 D identified by Glimmer3; putative; formate dehydrogenase subunit alpha 1657042..1657194 Aggregatibacter actinomycetemcomitans D11S-1 8537448 YP_003256312.1 CDS D11S_1730 NC_013416.1 1657271 1657588 D identified by Glimmer3; putative; formate dehydrogenase subunit alpha 1657271..1657588 Aggregatibacter actinomycetemcomitans D11S-1 8537449 YP_003256313.1 CDS D11S_1731 NC_013416.1 1657637 1660066 D identified by Glimmer3; putative; formate dehydrogenase subunit alpha 1657637..1660066 Aggregatibacter actinomycetemcomitans D11S-1 8537450 YP_003256314.1 CDS D11S_1732 NC_013416.1 1660068 1660994 D identified by Glimmer3; putative; formate dehydrogenase accessory protein 1660068..1660994 Aggregatibacter actinomycetemcomitans D11S-1 8537451 YP_003256315.1 CDS D11S_1733 NC_013416.1 1660987 1661700 D identified by Glimmer3; putative; formate dehydrogenase subunit gamma 1660987..1661700 Aggregatibacter actinomycetemcomitans D11S-1 8537452 YP_003256316.1 CDS D11S_1734 NC_013416.1 1661857 1661973 D identified by Glimmer3; putative; hypothetical protein 1661857..1661973 Aggregatibacter actinomycetemcomitans D11S-1 8537453 YP_003256317.1 CDS D11S_1735 NC_013416.1 1662328 1664613 R identified by Glimmer3; putative; [NiFe] hydrogenase maturation protein HypF complement(1662328..1664613) Aggregatibacter actinomycetemcomitans D11S-1 8537454 YP_003256318.1 CDS D11S_1736 NC_013416.1 1664909 1665508 D identified by Glimmer3; putative; electron transport protein HydN 1664909..1665508 Aggregatibacter actinomycetemcomitans D11S-1 8537455 YP_003256319.1 CDS D11S_1737 NC_013416.1 1665541 1665969 D identified by Glimmer3; putative; hydrogenase-4 subunit B 1665541..1665969 Aggregatibacter actinomycetemcomitans D11S-1 8537456 YP_003256320.1 CDS D11S_1738 NC_013416.1 1665941 1667563 D identified by Glimmer3; putative; hydrogenase-4 subunit B 1665941..1667563 Aggregatibacter actinomycetemcomitans D11S-1 8537457 YP_003256321.1 CDS D11S_1739 NC_013416.1 1667574 1668536 D identified by Glimmer3; putative; hydrogenase-4 subunit C 1667574..1668536 Aggregatibacter actinomycetemcomitans D11S-1 8537458 YP_003256322.1 CDS D11S_1740 NC_013416.1 1668549 1669994 D identified by Glimmer3; putative; hydrogenase-4 subunit D 1668549..1669994 Aggregatibacter actinomycetemcomitans D11S-1 8537459 YP_003256323.1 CDS hyfE NC_013416.1 1670005 1670643 D interacts with formate dehydrogenase to produce an active formate hydrogenlyase complex which cleaves formate to dihydrogen and carbon dioxide; hydrogenase 4 membrane subunit 1670005..1670643 Aggregatibacter actinomycetemcomitans D11S-1 8537460 YP_003256324.1 CDS D11S_1742 NC_013416.1 1670648 1672186 D identified by Glimmer3; putative; hydrogenase-4 subunit F 1670648..1672186 Aggregatibacter actinomycetemcomitans D11S-1 8537461 YP_003256325.1 CDS D11S_1743 NC_013416.1 1672206 1673936 D identified by Glimmer3; putative; hydrogenase-4 subunit G 1672206..1673936 Aggregatibacter actinomycetemcomitans D11S-1 8537462 YP_003256326.1 CDS D11S_1744 NC_013416.1 1673950 1674597 D identified by Glimmer3; putative; hydrogenase-4 subunit H 1673950..1674597 Aggregatibacter actinomycetemcomitans D11S-1 8537463 YP_003256327.1 CDS D11S_1745 NC_013416.1 1674594 1675370 D identified by Glimmer3; putative; hydrogenase-4 subunit I 1674594..1675370 Aggregatibacter actinomycetemcomitans D11S-1 8537464 YP_003256328.1 CDS D11S_1746 NC_013416.1 1675505 1675909 D identified by Glimmer3; putative; hydrogenase-4 subunit J 1675505..1675909 Aggregatibacter actinomycetemcomitans D11S-1 8537465 YP_003256329.1 CDS hycI NC_013416.1 1675899 1676360 D involved in the C-terminal processing of the large subunit of hydrogenase 3 HycE; hydrogenase 3 maturation protease 1675899..1676360 Aggregatibacter actinomycetemcomitans D11S-1 8537466 YP_003256330.1 CDS D11S_1748 NC_013416.1 1676952 1677377 D identified by Glimmer3; putative; formate dehydrogenase H 1676952..1677377 Aggregatibacter actinomycetemcomitans D11S-1 8537467 YP_003256331.1 CDS D11S_1749 NC_013416.1 1677426 1679111 D identified by Glimmer3; putative; formate dehydrogenase subunit alpha 1677426..1679111 Aggregatibacter actinomycetemcomitans D11S-1 8537468 YP_003256332.1 CDS D11S_1750 NC_013416.1 1679282 1680154 R identified by Glimmer3; putative; hypothetical protein complement(1679282..1680154) Aggregatibacter actinomycetemcomitans D11S-1 8537469 YP_003256333.1 CDS sucC NC_013416.1 1680165 1681334 R catalyzes the interconversion of succinyl-CoA and succinate; succinyl-CoA synthetase subunit beta complement(1680165..1681334) Aggregatibacter actinomycetemcomitans D11S-1 8537470 YP_003256334.1 CDS D11S_1752 NC_013416.1 1681391 1681531 R identified by Glimmer3; putative; hypothetical protein complement(1681391..1681531) Aggregatibacter actinomycetemcomitans D11S-1 8537471 YP_003256335.1 CDS D11S_1753 NC_013416.1 1681521 1682744 R identified by Glimmer3; putative; dihydrolipoyllysine-residue succinyltransferase complement(1681521..1682744) Aggregatibacter actinomycetemcomitans D11S-1 8537472 YP_003256336.1 CDS sucA NC_013416.1 1682870 1685677 R SucA; E1 component of the oxoglutarate dehydrogenase complex which catalyzes the formation of succinyl-CoA from 2-oxoglutarate; SucA catalyzes the reaction of 2-oxoglutarate with dihydrolipoamide succinyltransferase-lipoate to form dihydrolipoamide succinyltransferase-succinyldihydrolipoate and carbon dioxide; 2-oxoglutarate dehydrogenase E1 component complement(1682870..1685677) Aggregatibacter actinomycetemcomitans D11S-1 8537473 YP_003256337.1 CDS D11S_1755 NC_013416.1 1685762 1685884 D identified by Glimmer3; putative; hypothetical protein 1685762..1685884 Aggregatibacter actinomycetemcomitans D11S-1 8537474 YP_003256338.1 CDS D11S_1756 NC_013416.1 1685956 1686594 R identified by Glimmer3; putative; carboxy- protease complement(1685956..1686594) Aggregatibacter actinomycetemcomitans D11S-1 8537475 YP_003256339.1 CDS D11S_1757 NC_013416.1 1686671 1687117 R identified by Glimmer3; putative; twin-arginine translocation pathway signal complement(1686671..1687117) Aggregatibacter actinomycetemcomitans D11S-1 8537476 YP_003256340.1 CDS D11S_1758 NC_013416.1 1687296 1688804 R identified by Glimmer3; putative; periplasmic protein complement(1687296..1688804) Aggregatibacter actinomycetemcomitans D11S-1 8537477 YP_003256341.1 CDS D11S_1759 NC_013416.1 1688882 1690942 R Involved in the cleavage of a C-terminal peptide of 11 residues from the precursor form of penicillin-binding protein 3; carboxy-terminal protease complement(1688882..1690942) Aggregatibacter actinomycetemcomitans D11S-1 8537478 YP_003256342.1 CDS D11S_1760 NC_013416.1 1691016 1691624 R affects solute and DNA transport through an unknown mechanism; putative solute/DNA competence effector complement(1691016..1691624) Aggregatibacter actinomycetemcomitans D11S-1 8537479 YP_003256343.1 CDS D11S_1761 NC_013416.1 1691842 1693125 D identified by Glimmer3; putative; PqiA family integral membrane protein 1691842..1693125 Aggregatibacter actinomycetemcomitans D11S-1 8537480 YP_003256344.1 CDS D11S_1762 NC_013416.1 1693088 1695745 D identified by Glimmer3; putative; mce-like protein 1693088..1695745 Aggregatibacter actinomycetemcomitans D11S-1 8537481 YP_003256345.1 CDS D11S_1763 NC_013416.1 1695821 1697065 R catalyzes the release of the N-terminal amino acid from a tripeptide; peptidase T complement(1695821..1697065) Aggregatibacter actinomycetemcomitans D11S-1 8537482 YP_003256346.1 CDS potA NC_013416.1 1697329 1698447 D functions together with PotBCD (A2BCD) in ATP-dependent polyamine transport; PotA is the membrane-associated ATPase; putrescine/spermidine ABC transporter ATPase protein 1697329..1698447 Aggregatibacter actinomycetemcomitans D11S-1 8537483 YP_003256347.1 CDS potB NC_013416.1 1698431 1699291 D can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotB is a membrane component; spermidine/putrescine ABC transporter membrane protein 1698431..1699291 Aggregatibacter actinomycetemcomitans D11S-1 8537484 YP_003256348.1 CDS potC NC_013416.1 1699291 1700064 D can transport spermidine and putrescine but affinity is higher for spermidine; forms a complex of PotA2BCD; PotC is a membrane component; spermidine/putrescine ABC transporter membrane protein 1699291..1700064 Aggregatibacter actinomycetemcomitans D11S-1 8537485 YP_003256349.1 CDS D11S_1767 NC_013416.1 1700195 1701292 D identified by Glimmer3; putative; PotD protein 1700195..1701292 Aggregatibacter actinomycetemcomitans D11S-1 8537486 YP_003256350.1 CDS D11S_1768 NC_013416.1 1701414 1702310 D Reclaims exogenous and endogenous cytidine and 2'-deoxycytidine molecules for UMP synthesis; cytidine deaminase 1701414..1702310 Aggregatibacter actinomycetemcomitans D11S-1 8537487 YP_003256351.1 CDS D11S_1769 NC_013416.1 1702295 1702408 R identified by Glimmer3; putative; hypothetical protein complement(1702295..1702408) Aggregatibacter actinomycetemcomitans D11S-1 8537488 YP_003256352.1 CDS D11S_1770 NC_013416.1 1702389 1703705 R identified by Glimmer3; putative; seryl-tRNA synthetase complement(1702389..1703705) Aggregatibacter actinomycetemcomitans D11S-1 8537489 YP_003256353.1 CDS D11S_1771 NC_013416.1 1704013 1705680 D identified by Glimmer3; putative; C4-dicarboxylate membrane transporter 1704013..1705680 Aggregatibacter actinomycetemcomitans D11S-1 8537490 YP_003256354.1 CDS D11S_1772 NC_013416.1 1706177 1707517 R identified by Glimmer3; putative; recombination factor protein RarA complement(1706177..1707517) Aggregatibacter actinomycetemcomitans D11S-1 8537491 YP_003256355.1 CDS lolA NC_013416.1 1707530 1708147 R participates with LolB in the incorporation of lipoprotein into the outer membrane; outer-membrane lipoprotein carrier protein complement(1707530..1708147) Aggregatibacter actinomycetemcomitans D11S-1 8537492 YP_003256356.1 CDS D11S_1774 NC_013416.1 1708240 1710984 R identified by Glimmer3; putative; outer-membrane lipoprotein carrier protein complement(1708240..1710984) Aggregatibacter actinomycetemcomitans D11S-1 8537493 YP_003256357.1 CDS D11S_1775 NC_013416.1 1710988 1711467 R mediates a global response to leucine; acts as a regulator for several genes involved in the high-affinity branched-chain amino acid transport system; leucine-responsive transcriptional regulator complement(1710988..1711467) Aggregatibacter actinomycetemcomitans D11S-1 8537494 YP_003256358.1 CDS D11S_1776 NC_013416.1 1712006 1713379 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(1712006..1713379) Aggregatibacter actinomycetemcomitans D11S-1 8537495 YP_003256359.1 CDS D11S_1777 NC_013416.1 1713382 1714536 R identified by Glimmer3; putative; adenylate cyclase complement(1713382..1714536) Aggregatibacter actinomycetemcomitans D11S-1 8537496 YP_003256360.1 CDS D11S_1778 NC_013416.1 1714701 1715381 D identified by Glimmer3; putative; phosphate transport regulator 1714701..1715381 Aggregatibacter actinomycetemcomitans D11S-1 8537497 YP_003256361.1 CDS D11S_1779 NC_013416.1 1715407 1716672 D identified by Glimmer3; putative; phosphate permease 1715407..1716672 Aggregatibacter actinomycetemcomitans D11S-1 8537498 YP_003256362.1 CDS D11S_1780 NC_013416.1 1716741 1717352 D identified by Glimmer3; putative; SH3 domain-containing protein 1716741..1717352 Aggregatibacter actinomycetemcomitans D11S-1 8537499 YP_003256363.1 CDS cca NC_013416.1 1717352 1718656 D catalyzes the addition and repair of the essential 3'-terminal CCA sequence in tRNAs without using a nucleic acid template; phosphohydrolase activities include hydrolysis of pyrophosphate, 5'-nucleoside tri- and diphosphates, NADP, and 2'-AMP with the production of Pi, metal-dependent phosphodiesterase activity for 2',3'-cAMP, 2',3'-cGMP, and 2',3'-cCMP, and hydrolysis 2',3'-cyclic substrates with the formation of 2'-nucleotides and 3'-nucleotides; these phosphohydrolase activities are probably involved in the repair of the tRNA 3'-CCA terminus degraded by intracellular RNases; multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 1717352..1718656 Aggregatibacter actinomycetemcomitans D11S-1 8537500 YP_003256364.1 CDS lolB NC_013416.1 1718691 1719314 D Incorporates lipoproteins in the outer membrane after they are released by the LolA protein; outer membrane lipoprotein LolB 1718691..1719314 Aggregatibacter actinomycetemcomitans D11S-1 8537501 YP_003256365.1 CDS ipk NC_013416.1 1719314 1720225 D An essential enzyme in the nonmevalonate pathway of isopentenyl diphosphate and dimethylallyl diphosphate biosynthesis; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 1719314..1720225 Aggregatibacter actinomycetemcomitans D11S-1 8537502 YP_003256366.1 CDS D11S_1784 NC_013416.1 1720266 1721216 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 1720266..1721216 Aggregatibacter actinomycetemcomitans D11S-1 8537503 YP_003256367.1 CDS D11S_1785 NC_013416.1 1721392 1721538 D identified by Glimmer3; putative; lipoprotein 1721392..1721538 Aggregatibacter actinomycetemcomitans D11S-1 8537504 YP_003256368.1 CDS lldD NC_013416.1 1721844 1722989 D flavin mononucleotide-dependent dehydrogenase; functions in aerobic respiration and also has a role in anaerobic nitrate respiration; L-lactate dehydrogenase 1721844..1722989 Aggregatibacter actinomycetemcomitans D11S-1 8537505 YP_003256369.1 CDS D11S_1787 NC_013416.1 1723232 1724821 D identified by Glimmer3; putative; L-lactate transport 1723232..1724821 Aggregatibacter actinomycetemcomitans D11S-1 8537506 YP_003256370.1 CDS D11S_1788 NC_013416.1 1724868 1725014 D identified by Glimmer3; putative; hypothetical protein 1724868..1725014 Aggregatibacter actinomycetemcomitans D11S-1 8537507 YP_003256371.1 CDS D11S_1789 NC_013416.1 1724976 1725308 R identified by Glimmer3; putative; hypothetical protein complement(1724976..1725308) Aggregatibacter actinomycetemcomitans D11S-1 8537508 YP_003256372.1 CDS D11S_1790 NC_013416.1 1725333 1725449 D identified by Glimmer3; putative; hypothetical protein 1725333..1725449 Aggregatibacter actinomycetemcomitans D11S-1 8537509 YP_003256373.1 CDS D11S_1791 NC_013416.1 1725508 1726590 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 1725508..1726590 Aggregatibacter actinomycetemcomitans D11S-1 8537510 YP_003256374.1 CDS D11S_1792 NC_013416.1 1726617 1727762 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 1726617..1727762 Aggregatibacter actinomycetemcomitans D11S-1 8537511 YP_003256375.1 CDS D11S_1793 NC_013416.1 1727773 1729104 D catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase 1727773..1729104 Aggregatibacter actinomycetemcomitans D11S-1 8537512 YP_003256376.1 CDS rnhA NC_013416.1 1729183 1729650 R An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H complement(1729183..1729650) Aggregatibacter actinomycetemcomitans D11S-1 8537513 YP_003256377.1 CDS D11S_1795 NC_013416.1 1729718 1730479 D 3'-5' exonuclease of DNA polymerase III; DNA polymerase III subunit epsilon 1729718..1730479 Aggregatibacter actinomycetemcomitans D11S-1 8537514 YP_003256378.1 CDS D11S_1798 NC_013416.1 1730927 1731181 D identified by Glimmer3; putative; Stability protein StbD 1730927..1731181 Aggregatibacter actinomycetemcomitans D11S-1 8537517 YP_003256379.1 CDS D11S_1799 NC_013416.1 1731171 1731461 D identified by Glimmer3; putative; putative relE protein 1731171..1731461 Aggregatibacter actinomycetemcomitans D11S-1 8537518 YP_003256380.1 CDS D11S_1800 NC_013416.1 1731519 1731857 R identified by Glimmer3; putative; cupin 2 complement(1731519..1731857) Aggregatibacter actinomycetemcomitans D11S-1 8537519 YP_003256381.1 CDS D11S_1801 NC_013416.1 1732285 1732650 D identified by Glimmer3; putative; hypothetical protein 1732285..1732650 Aggregatibacter actinomycetemcomitans D11S-1 8537520 YP_003256382.1 CDS D11S_1802 NC_013416.1 1732821 1734209 D identified by Glimmer3; putative; peptidase U32 1732821..1734209 Aggregatibacter actinomycetemcomitans D11S-1 8537521 YP_003256383.1 CDS queA NC_013416.1 1734506 1735597 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 1734506..1735597 Aggregatibacter actinomycetemcomitans D11S-1 8537522 YP_003256384.1 CDS D11S_1804 NC_013416.1 1735641 1736777 R identified by Glimmer3; putative; aminotransferase, class I and II complement(1735641..1736777) Aggregatibacter actinomycetemcomitans D11S-1 8537523 YP_003256385.1 CDS tgt NC_013416.1 1737250 1738401 D Exchanges the guanine residue with 7-aminomethyl-7-deazaguanine in tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr); queuine tRNA-ribosyltransferase 1737250..1738401 Aggregatibacter actinomycetemcomitans D11S-1 8537524 YP_003256386.1 CDS yajC NC_013416.1 1738693 1738992 D member of preprotein translocase; forms a heterotrimer with SecD and SecF; links the SecD/SecF/YajC/YidC complex with the SecY/SecE/SecG complex; preprotein translocase subunit YajC 1738693..1738992 Aggregatibacter actinomycetemcomitans D11S-1 8537525 YP_003256387.1 CDS secD NC_013416.1 1739023 1740873 D part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; preprotein translocase subunit SecD 1739023..1740873 Aggregatibacter actinomycetemcomitans D11S-1 8537526 YP_003256388.1 CDS secF NC_013416.1 1740890 1741855 D forms a complex with SecD and YajC; SecDFyajC stimulates the proton motive force-driven protein translocation; seems to modulate the cycling of SecA by stabilizing its membrane-inserted state and appears to be required for the release of mature proteins from the extracytoplasmic side of the membrane; in some organisms, such as Bacillus subtilis, SecD is fused to SecF; preprotein translocase subunit SecF 1740890..1741855 Aggregatibacter actinomycetemcomitans D11S-1 8537527 YP_003256389.1 CDS D11S_1809 NC_013416.1 1742075 1744702 D identified by Glimmer3; putative; heme acquisition system receptor 1742075..1744702 Aggregatibacter actinomycetemcomitans D11S-1 8537528 YP_003256390.1 CDS D11S_1810 NC_013416.1 1744773 1744949 R identified by Glimmer3; putative; hypothetical protein complement(1744773..1744949) Aggregatibacter actinomycetemcomitans D11S-1 8537529 YP_003256391.1 CDS D11S_1811 NC_013416.1 1745052 1747673 D identified by Glimmer3; putative; bifunctional acetaldehyde-CoA/alcohol dehydrogenase 1745052..1747673 Aggregatibacter actinomycetemcomitans D11S-1 8537530 YP_003256392.1 CDS D11S_1812 NC_013416.1 1747756 1748709 R identified by Glimmer3; putative; monosaccharide-transporting ATPase complement(1747756..1748709) Aggregatibacter actinomycetemcomitans D11S-1 8537531 YP_003256393.1 CDS D11S_1813 NC_013416.1 1748848 1749756 D identified by Glimmer3; putative; inositol 2-dehydrogenase 1748848..1749756 Aggregatibacter actinomycetemcomitans D11S-1 8537532 YP_003256394.1 CDS mtlR NC_013416.1 1749860 1750372 R Acts as a repressor of the mtlAD operon; mannitol repressor protein complement(1749860..1750372) Aggregatibacter actinomycetemcomitans D11S-1 8537533 YP_003256395.1 CDS D11S_1815 NC_013416.1 1750450 1751598 R identified by Glimmer3; putative; mannitol-1-phosphate 5-dehydrogenase complement(1750450..1751598) Aggregatibacter actinomycetemcomitans D11S-1 8537534 YP_003256396.1 CDS D11S_1816 NC_013416.1 1751676 1753556 R identified by Glimmer3; putative; PTS system, mannitol-specific IIC subunit complement(1751676..1753556) Aggregatibacter actinomycetemcomitans D11S-1 8537535 YP_003256397.1 CDS D11S_1817 NC_013416.1 1753967 1755400 R identified by Glimmer3; putative; hemolysin D complement(1753967..1755400) Aggregatibacter actinomycetemcomitans D11S-1 8537536 YP_003256398.1 CDS D11S_1818 NC_013416.1 1755415 1757538 R identified by Glimmer3; putative; hemolysin secretion protein HlyB complement(1755415..1757538) Aggregatibacter actinomycetemcomitans D11S-1 8537537 YP_003256399.1 CDS D11S_1819 NC_013416.1 1757607 1760774 R identified by Glimmer3; putative; hemolysin A complement(1757607..1760774) Aggregatibacter actinomycetemcomitans D11S-1 8537538 YP_003256400.1 CDS D11S_1820 NC_013416.1 1760787 1761293 R identified by Glimmer3; putative; hemolysin-activating lysine-acyltransferase HlyC complement(1760787..1761293) Aggregatibacter actinomycetemcomitans D11S-1 8537539 YP_003256401.1 CDS glyA NC_013416.1 1762400 1763662 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(1762400..1763662) Aggregatibacter actinomycetemcomitans D11S-1 8537540 YP_003256402.1 CDS D11S_1822 NC_013416.1 1763797 1764339 R identified by Glimmer3; putative; lipoprotein complement(1763797..1764339) Aggregatibacter actinomycetemcomitans D11S-1 8537541 YP_003256403.1 CDS D11S_1823 NC_013416.1 1764577 1764717 R identified by Glimmer3; putative; hypothetical protein complement(1764577..1764717) Aggregatibacter actinomycetemcomitans D11S-1 8537542 YP_003256404.1 CDS D11S_1824 NC_013416.1 1764720 1764869 R identified by Glimmer3; putative; PTS system sucrose-specific transporter subunit IIBC complement(1764720..1764869) Aggregatibacter actinomycetemcomitans D11S-1 8537543 YP_003256405.1 CDS rsmC NC_013416.1 1764956 1765960 R 16S rRNA M2G1207 methyltransferase; one of many enzymes that modify bases of the ribosomal RNA; this enzyme methylates the G at position 1207 of the small ribosomal subunit; 16S ribosomal RNA m2G1207 methyltransferase complement(1764956..1765960) Aggregatibacter actinomycetemcomitans D11S-1 8537544 YP_003256406.1 CDS D11S_1826 NC_013416.1 1766016 1766465 D with the chi subunit binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit psi 1766016..1766465 Aggregatibacter actinomycetemcomitans D11S-1 8537545 YP_003256407.1 CDS rimI NC_013416.1 1766475 1766918 D alanine acetyltransferase that specifically acetylates ribosomal protein S18; ribosomal-protein-alanine N-acetyltransferase 1766475..1766918 Aggregatibacter actinomycetemcomitans D11S-1 8537546 YP_003256408.1 CDS D11S_1828 NC_013416.1 1766920 1770336 R identified by Glimmer3; putative; exodeoxyribonuclease V subunit gamma complement(1766920..1770336) Aggregatibacter actinomycetemcomitans D11S-1 8537547 YP_003256409.1 CDS D11S_1829 NC_013416.1 1770348 1770650 R identified by Glimmer3; putative; hypothetical protein complement(1770348..1770650) Aggregatibacter actinomycetemcomitans D11S-1 8537548 YP_003256410.1 CDS D11S_1830 NC_013416.1 1770625 1771320 R identified by Glimmer3; putative; hypothetical protein complement(1770625..1771320) Aggregatibacter actinomycetemcomitans D11S-1 8537549 YP_003256411.1 CDS D11S_1831 NC_013416.1 1771349 1771708 R identified by Glimmer3; putative; hypothetical protein complement(1771349..1771708) Aggregatibacter actinomycetemcomitans D11S-1 8537550 YP_003256412.1 CDS D11S_1832 NC_013416.1 1771722 1772339 R identified by Glimmer3; putative; type II secretory pathway, pseudopilin complement(1771722..1772339) Aggregatibacter actinomycetemcomitans D11S-1 8537551 YP_003256413.1 CDS D11S_1836 NC_013416.1 1772948 1773415 R identified by Glimmer3; putative; peptidoglycan-associated lipoprotein complement(1772948..1773415) Aggregatibacter actinomycetemcomitans D11S-1 8537555 YP_003256414.1 CDS tolB NC_013416.1 1773430 1774710 R forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA; translocation protein TolB complement(1773430..1774710) Aggregatibacter actinomycetemcomitans D11S-1 8537556 YP_003256415.1 CDS tolA NC_013416.1 1774745 1775953 R inner membrane component of 7 member Tol-Pal envelope-spanning complex; involved in maintaining cell envelope integrity; utilized by colicins and filamentous phages for import; interacts with TolB, Pal, and through TolB to various outer membrane porins; cell envelope integrity inner membrane protein TolA complement(1774745..1775953) Aggregatibacter actinomycetemcomitans D11S-1 8537557 YP_003256416.1 CDS D11S_1839 NC_013416.1 1775970 1776392 R membrane spanning protein in TolA-TolQ-TolR complex; involved in the tonB-independent uptake of group A colicins; colicin uptake protein TolR complement(1775970..1776392) Aggregatibacter actinomycetemcomitans D11S-1 8537558 YP_003256417.1 CDS D11S_1840 NC_013416.1 1776478 1777167 R identified by Glimmer3; putative; protein TolQ complement(1776478..1777167) Aggregatibacter actinomycetemcomitans D11S-1 8537559 YP_003256418.1 CDS D11S_1841 NC_013416.1 1777197 1777601 R identified by Glimmer3; putative; tol-pal system-associated acyl-CoA thioesterase complement(1777197..1777601) Aggregatibacter actinomycetemcomitans D11S-1 8537560 YP_003256419.1 CDS D11S_1842 NC_013416.1 1777666 1777785 D identified by Glimmer3; putative; hypothetical protein 1777666..1777785 Aggregatibacter actinomycetemcomitans D11S-1 8537561 YP_003256420.1 CDS D11S_1843 NC_013416.1 1778110 1779246 R identified by Glimmer3; putative; cytochrome D ubiquinol oxidase subunit II complement(1778110..1779246) Aggregatibacter actinomycetemcomitans D11S-1 8537562 YP_003256421.1 CDS D11S_1844 NC_013416.1 1779261 1780730 R identified by Glimmer3; putative; cytochrome D ubiquinol oxidase subunit 1 complement(1779261..1780730) Aggregatibacter actinomycetemcomitans D11S-1 8537563 YP_003256422.1 CDS D11S_1845 NC_013416.1 1781278 1781589 D identified by Glimmer3; putative; holliday junction DNA helicase B 1781278..1781589 Aggregatibacter actinomycetemcomitans D11S-1 8537564 YP_003256423.1 CDS ruvB NC_013416.1 1781643 1782662 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(1781643..1782662) Aggregatibacter actinomycetemcomitans D11S-1 8537565 YP_003256424.1 CDS ruvA NC_013416.1 1782671 1783285 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(1782671..1783285) Aggregatibacter actinomycetemcomitans D11S-1 8537566 YP_003256425.1 CDS ruvC NC_013416.1 1783349 1783921 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(1783349..1783921) Aggregatibacter actinomycetemcomitans D11S-1 8537567 YP_003256426.1 CDS D11S_1849 NC_013416.1 1783977 1784387 R identified by Glimmer3; putative; excinuclease ABC subunit A complement(1783977..1784387) Aggregatibacter actinomycetemcomitans D11S-1 8537568 YP_003256427.1 CDS D11S_1850 NC_013416.1 1784399 1785139 R identified by Glimmer3; putative; hypothetical protein complement(1784399..1785139) Aggregatibacter actinomycetemcomitans D11S-1 8537569 YP_003256428.1 CDS ntpA NC_013416.1 1785173 1785619 R converts dATP to dAMP and pyrophosphate; dATP pyrophosphohydrolase complement(1785173..1785619) Aggregatibacter actinomycetemcomitans D11S-1 8537570 YP_003256429.1 CDS D11S_1852 NC_013416.1 1785725 1786993 R identified by Glimmer3; putative; aspartyl-tRNA synthetase complement(1785725..1786993) Aggregatibacter actinomycetemcomitans D11S-1 8537571 YP_003256430.1 CDS D11S_1853 NC_013416.1 1787114 1787302 R identified by Glimmer3; putative; hypothetical protein complement(1787114..1787302) Aggregatibacter actinomycetemcomitans D11S-1 8537572 YP_003256431.1 CDS aspS NC_013416.1 1787385 1789163 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(1787385..1789163) Aggregatibacter actinomycetemcomitans D11S-1 8537573 YP_003256432.1 CDS D11S_1855 NC_013416.1 1789371 1789898 D identified by Glimmer3; putative; ribonuclease T 1789371..1789898 Aggregatibacter actinomycetemcomitans D11S-1 8537574 YP_003256433.1 CDS D11S_1856 NC_013416.1 1789970 1790695 D identified by Glimmer3; putative; methyltransferase 1789970..1790695 Aggregatibacter actinomycetemcomitans D11S-1 8537575 YP_003256434.1 CDS D11S_1857 NC_013416.1 1790982 1791122 R identified by Glimmer3; putative; transposase complement(1790982..1791122) Aggregatibacter actinomycetemcomitans D11S-1 8537576 YP_003256435.1 CDS D11S_1858 NC_013416.1 1791391 1793868 R identified by Glimmer3; putative; putative N-6 DNA methylase complement(1791391..1793868) Aggregatibacter actinomycetemcomitans D11S-1 8537577 YP_003256436.1 CDS D11S_1859 NC_013416.1 1794078 1794410 R identified by Glimmer3; putative; hypothetical protein complement(1794078..1794410) Aggregatibacter actinomycetemcomitans D11S-1 8537578 YP_003256437.1 CDS D11S_1860 NC_013416.1 1794638 1795618 D identified by Glimmer3; putative; putative transposase 1794638..1795618 Aggregatibacter actinomycetemcomitans D11S-1 8537579 YP_003256438.1 CDS D11S_1861 NC_013416.1 1795618 1795776 D identified by Glimmer3; putative; DNA repair ATPase 1795618..1795776 Aggregatibacter actinomycetemcomitans D11S-1 8537580 YP_003256439.1 CDS D11S_1862 NC_013416.1 1796199 1798766 R identified by Glimmer3; putative; hypothetical protein complement(1796199..1798766) Aggregatibacter actinomycetemcomitans D11S-1 8537581 YP_003256440.1 CDS D11S_1863 NC_013416.1 1798909 1800240 R identified by Glimmer3; putative; glycerol-3-phosphate transporter complement(1798909..1800240) Aggregatibacter actinomycetemcomitans D11S-1 8537582 YP_003256441.1 CDS D11S_1864 NC_013416.1 1800641 1802593 D identified by Glimmer3; putative; outer membrane protein 64 1800641..1802593 Aggregatibacter actinomycetemcomitans D11S-1 8537583 YP_003256442.1 CDS D11S_1865 NC_013416.1 1802752 1803159 D identified by Glimmer3; putative; lactoylglutathione lyase 1802752..1803159 Aggregatibacter actinomycetemcomitans D11S-1 8537584 YP_003256443.1 CDS D11S_1866 NC_013416.1 1803246 1803899 D Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 1803246..1803899 Aggregatibacter actinomycetemcomitans D11S-1 8537585 YP_003256444.1 CDS D11S_1867 NC_013416.1 1804251 1805603 D identified by Glimmer3; putative; Na+/H+ antiporter NhaC 1804251..1805603 Aggregatibacter actinomycetemcomitans D11S-1 8537586 YP_003256445.1 CDS D11S_1868 NC_013416.1 1805667 1806233 D identified by Glimmer3; putative; primosomal replication protein N 1805667..1806233 Aggregatibacter actinomycetemcomitans D11S-1 8537587 YP_003256446.1 CDS D11S_1869 NC_013416.1 1806290 1807714 R catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase complement(1806290..1807714) Aggregatibacter actinomycetemcomitans D11S-1 8537588 YP_003256447.1 CDS D11S_1870 NC_013416.1 1807822 1807950 D identified by Glimmer3; putative; hypothetical protein 1807822..1807950 Aggregatibacter actinomycetemcomitans D11S-1 8537589 YP_003256448.1 CDS D11S_1871 NC_013416.1 1808058 1808201 D identified by Glimmer3; putative; 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 1808058..1808201 Aggregatibacter actinomycetemcomitans D11S-1 8537590 YP_003256449.1 CDS D11S_1872 NC_013416.1 1808915 1809646 R identified by Glimmer3; putative; hypothetical protein complement(1808915..1809646) Aggregatibacter actinomycetemcomitans D11S-1 8537591 YP_003256450.1 CDS D11S_1873 NC_013416.1 1809648 1810637 R identified by Glimmer3; putative; octaprenyl-diphosphate synthase complement(1809648..1810637) Aggregatibacter actinomycetemcomitans D11S-1 8537592 YP_003256451.1 CDS rplU NC_013416.1 1810885 1811196 D identified by Glimmer3; putative; 50S ribosomal protein L21 1810885..1811196 Aggregatibacter actinomycetemcomitans D11S-1 8537593 YP_003256452.1 CDS rpmA NC_013416.1 1811217 1811474 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 1811217..1811474 Aggregatibacter actinomycetemcomitans D11S-1 8537594 YP_003256453.1 CDS D11S_1876 NC_013416.1 1811546 1812469 D identified by Glimmer3; putative; GTPase ObgE 1811546..1812469 Aggregatibacter actinomycetemcomitans D11S-1 8537595 YP_003256454.1 CDS D11S_1877 NC_013416.1 1812547 1813464 D identified by Glimmer3; putative; 50S ribosomal protein L27 1812547..1813464 Aggregatibacter actinomycetemcomitans D11S-1 8537596 YP_003256455.1 CDS obgE NC_013416.1 1813501 1814676 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 1813501..1814676 Aggregatibacter actinomycetemcomitans D11S-1 8537597 YP_003256456.1 CDS D11S_1879 NC_013416.1 1814673 1814792 R identified by Glimmer3; putative; hypothetical protein complement(1814673..1814792) Aggregatibacter actinomycetemcomitans D11S-1 8537598 YP_003256457.1 CDS smpB NC_013416.1 1814744 1815226 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(1814744..1815226) Aggregatibacter actinomycetemcomitans D11S-1 8537599 YP_003256458.1 CDS D11S_1881 NC_013416.1 1815434 1815571 R identified by Glimmer3; putative; hypothetical protein complement(1815434..1815571) Aggregatibacter actinomycetemcomitans D11S-1 8537600 YP_003256459.1 CDS D11S_1882 NC_013416.1 1815594 1816442 D identified by Glimmer3; putative; oligopeptide ABC transporter periplasmic oligopeptide-binding protein 1815594..1816442 Aggregatibacter actinomycetemcomitans D11S-1 8537601 YP_003256460.1 CDS D11S_1883 NC_013416.1 1816519 1817217 D identified by Glimmer3; putative; oligopeptide ABC transporter periplasmic oligopeptide-binding protein 1816519..1817217 Aggregatibacter actinomycetemcomitans D11S-1 8537602 YP_003256461.1 CDS oppB NC_013416.1 1817318 1818238 D identified by Glimmer3; putative; oligopeptide transporter permease 1817318..1818238 Aggregatibacter actinomycetemcomitans D11S-1 8537603 YP_003256462.1 CDS D11S_1885 NC_013416.1 1818248 1819186 D identified by Glimmer3; putative; oligopeptide transport system permease OppC 1818248..1819186 Aggregatibacter actinomycetemcomitans D11S-1 8537604 YP_003256463.1 CDS oppD NC_013416.1 1819196 1820179 D identified by Glimmer3; putative; oligopeptide transporter ATP-binding protein 1819196..1820179 Aggregatibacter actinomycetemcomitans D11S-1 8537605 YP_003256464.1 CDS D11S_1887 NC_013416.1 1820176 1821174 D identified by Glimmer3; putative; oligopeptide transport ATP-binding protein OppF 1820176..1821174 Aggregatibacter actinomycetemcomitans D11S-1 8537606 YP_003256465.1 CDS D11S_1888 NC_013416.1 1821281 1821988 R identified by Glimmer3; putative; two-component response regulator complement(1821281..1821988) Aggregatibacter actinomycetemcomitans D11S-1 8537607 YP_003256466.1 CDS rpmE2 NC_013416.1 1822399 1822665 R RpmE2; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 type B complement(1822399..1822665) Aggregatibacter actinomycetemcomitans D11S-1 8537608 YP_003256467.1 CDS D11S_1890 NC_013416.1 1822877 1823446 R identified by Glimmer3; putative; decarboxylase family protein Rossmann fold nucleotide-binding protein complement(1822877..1823446) Aggregatibacter actinomycetemcomitans D11S-1 8537609 YP_003256468.1 CDS D11S_1891 NC_013416.1 1823589 1825379 D identified by Glimmer3; putative; thiol:disulfide interchange protein DsbD 1823589..1825379 Aggregatibacter actinomycetemcomitans D11S-1 8537610 YP_003256469.1 CDS D11S_1892 NC_013416.1 1825368 1825481 R identified by Glimmer3; putative; hypothetical protein complement(1825368..1825481) Aggregatibacter actinomycetemcomitans D11S-1 8537611 YP_003256470.1 CDS D11S_1893 NC_013416.1 1825459 1825848 D identified by Glimmer3; putative; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 1825459..1825848 Aggregatibacter actinomycetemcomitans D11S-1 8537612 YP_003256471.1 CDS D11S_1895 NC_013416.1 1826246 1829128 R identified by Glimmer3; putative; ribonuclease E complement(1826246..1829128) Aggregatibacter actinomycetemcomitans D11S-1 8537614 YP_003256472.1 CDS D11S_1896 NC_013416.1 1829404 1829544 R identified by Glimmer3; putative; hypothetical protein complement(1829404..1829544) Aggregatibacter actinomycetemcomitans D11S-1 8537615 YP_003256473.1 CDS D11S_1897 NC_013416.1 1829603 1830562 D catalyzes the transformation of uracil to pseudouracil at nucleotides U955, U2504, and U2580 in 23S rRNA; 23S rRNA pseudouridylate synthase C 1829603..1830562 Aggregatibacter actinomycetemcomitans D11S-1 8537616 YP_003256474.1 CDS D11S_1898 NC_013416.1 1830761 1830976 R identified by Glimmer3; putative; thioredoxin complement(1830761..1830976) Aggregatibacter actinomycetemcomitans D11S-1 8537617 YP_003256475.1 CDS D11S_1899 NC_013416.1 1831184 1832179 R identified by Glimmer3; putative; D-lactate dehydrogenase complement(1831184..1832179) Aggregatibacter actinomycetemcomitans D11S-1 8537618 YP_003256476.1 CDS D11S_1900 NC_013416.1 1832203 1833333 R catalyzes the formation of cysteine from cystathionine; in B. subtilis also has O-acetylhomoserine thiolyase activity; cystathionine gamma-synthase complement(1832203..1833333) Aggregatibacter actinomycetemcomitans D11S-1 8537619 YP_003256477.1 CDS D11S_1903 NC_013416.1 1834313 1835014 D identified by Glimmer3; putative; Lytic transglycosylase catalytic 1834313..1835014 Aggregatibacter actinomycetemcomitans D11S-1 8537622 YP_003256478.1 CDS D11S_1904 NC_013416.1 1835029 1835331 D identified by Glimmer3; putative; hypothetical protein 1835029..1835331 Aggregatibacter actinomycetemcomitans D11S-1 8537623 YP_003256479.1 CDS D11S_1905 NC_013416.1 1835608 1836342 D identified by Glimmer3; putative; type IV secretion system protein VirB4 1835608..1836342 Aggregatibacter actinomycetemcomitans D11S-1 8537624 YP_003256480.1 CDS D11S_1906 NC_013416.1 1836305 1837294 D identified by Glimmer3; putative; ATPase 1836305..1837294 Aggregatibacter actinomycetemcomitans D11S-1 8537625 YP_003256481.1 CDS D11S_1907 NC_013416.1 1837297 1837494 D identified by Glimmer3; putative; hypothetical protein 1837297..1837494 Aggregatibacter actinomycetemcomitans D11S-1 8537626 YP_003256482.1 CDS D11S_1908 NC_013416.1 1837927 1838475 R identified by Glimmer3; putative; hypothetical protein complement(1837927..1838475) Aggregatibacter actinomycetemcomitans D11S-1 8537627 YP_003256483.1 CDS D11S_1909 NC_013416.1 1838462 1838596 D identified by Glimmer3; putative; hypothetical protein 1838462..1838596 Aggregatibacter actinomycetemcomitans D11S-1 8537628 YP_003256484.1 CDS D11S_1910 NC_013416.1 1838611 1839375 D identified by Glimmer3; putative; gamma-glutamyl phosphate reductase 1838611..1839375 Aggregatibacter actinomycetemcomitans D11S-1 8537629 YP_003256485.1 CDS D11S_1911 NC_013416.1 1839639 1840646 R catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase complement(1839639..1840646) Aggregatibacter actinomycetemcomitans D11S-1 8537630 YP_003256486.1 CDS D11S_1912 NC_013416.1 1840804 1842177 D identified by Glimmer3; putative; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 1840804..1842177 Aggregatibacter actinomycetemcomitans D11S-1 8537631 YP_003256487.1 CDS mltA NC_013416.1 1842557 1843675 D membrane-bound, lytic; catalyzes the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid and N-acetylglucosamine residues; murein transglycosylase A 1842557..1843675 Aggregatibacter actinomycetemcomitans D11S-1 8537633 YP_003256488.1 CDS D11S_1915 NC_013416.1 1843675 1844445 D identified by Glimmer3; putative; ThiF family protein 1843675..1844445 Aggregatibacter actinomycetemcomitans D11S-1 8537634 YP_003256489.1 CDS D11S_1916 NC_013416.1 1844545 1845564 D identified by Glimmer3; putative; high-affinity zinc uptake system protein ZnuA 1844545..1845564 Aggregatibacter actinomycetemcomitans D11S-1 8537635 YP_003256490.1 CDS D11S_1917 NC_013416.1 1845692 1846504 D identified by Glimmer3; putative; 5'-nucleotidase 1845692..1846504 Aggregatibacter actinomycetemcomitans D11S-1 8537636 YP_003256491.1 CDS D11S_1918 NC_013416.1 1846584 1847075 R putative nucleotide binding property based on structural studies of Haemophilus influenzae crystallized protein in PDB Accession Number 1IN0 and NMR studies of Escherichia coli YajQ; the YajQ protein from Pseudomonas synringae appears to play a role in activation of bateriophage phi6 segment L transcription; putative nucleotide-binding protein complement(1846584..1847075) Aggregatibacter actinomycetemcomitans D11S-1 8537637 YP_003256492.1 CDS serB NC_013416.1 1847086 1848030 R catalyzes the formation of serine from O-phosphoserine; phosphoserine phosphatase complement(1847086..1848030) Aggregatibacter actinomycetemcomitans D11S-1 8537638 YP_003256493.1 CDS D11S_1920 NC_013416.1 1848106 1848783 D identified by Glimmer3; putative; protein AhpA 1848106..1848783 Aggregatibacter actinomycetemcomitans D11S-1 8537639 YP_003256494.1 CDS D11S_1921 NC_013416.1 1848740 1848859 R identified by Glimmer3; putative; hypothetical protein complement(1848740..1848859) Aggregatibacter actinomycetemcomitans D11S-1 8537640 YP_003256495.1 CDS rpsT NC_013416.1 1848893 1849156 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1848893..1849156) Aggregatibacter actinomycetemcomitans D11S-1 8537641 YP_003256496.1 CDS D11S_1923 NC_013416.1 1849424 1851001 D identified by Glimmer3; putative; integral membrane protein MviN 1849424..1851001 Aggregatibacter actinomycetemcomitans D11S-1 8537642 YP_003256497.1 CDS D11S_1924 NC_013416.1 1851079 1852005 D catalyzes the formation of FMN from riboflavin and the formation of FAD from FMN; in Bacillus the ribC gene has both flavokinase and FAD synthetase activities; bifunctional riboflavin kinase/FMN adenylyltransferase 1851079..1852005 Aggregatibacter actinomycetemcomitans D11S-1 8537643 YP_003256498.1 CDS D11S_1925 NC_013416.1 1852219 1852383 D identified by Glimmer3; putative; hypothetical protein 1852219..1852383 Aggregatibacter actinomycetemcomitans D11S-1 8537644 YP_003256499.1 CDS ileS NC_013416.1 1852421 1855243 D IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase 1852421..1855243 Aggregatibacter actinomycetemcomitans D11S-1 8537645 YP_003256500.1 CDS lspA NC_013416.1 1855356 1855817 D lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase 1855356..1855817 Aggregatibacter actinomycetemcomitans D11S-1 8537646 YP_003256501.1 CDS ispH NC_013416.1 1855817 1856761 D catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate into isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP); functions in the nonmevalonate isoprenoid biosynthesis pathway; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 1855817..1856761 Aggregatibacter actinomycetemcomitans D11S-1 8537647 YP_003256502.1 CDS tig NC_013416.1 1857226 1858524 R Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor complement(1857226..1858524) Aggregatibacter actinomycetemcomitans D11S-1 8537648 YP_003256503.1 CDS xerD NC_013416.1 1858688 1859581 R site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; XerD specifically exchanges the bottom strands; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerD complement(1858688..1859581) Aggregatibacter actinomycetemcomitans D11S-1 8537649 YP_003256504.1 CDS D11S_1931 NC_013416.1 1859584 1860744 R putative transporter of 3-phenylpropionate across the inner membrane; member of the major facilitator superfamily of transporters; putative 3-phenylpropionic acid transporter complement(1859584..1860744) Aggregatibacter actinomycetemcomitans D11S-1 8537650 YP_003256505.1 CDS D11S_1932 NC_013416.1 1860744 1860983 R identified by Glimmer3; putative; pyrroline-5-carboxylate reductase complement(1860744..1860983) Aggregatibacter actinomycetemcomitans D11S-1 8537651 YP_003256506.1 CDS D11S_1933 NC_013416.1 1860989 1861447 R identified by Glimmer3; putative; pyrroline-5-carboxylate reductase complement(1860989..1861447) Aggregatibacter actinomycetemcomitans D11S-1 8537652 YP_003256507.1 CDS rdgC NC_013416.1 1861510 1862415 D Required for efficient pilin antigenic variation; recombination associated protein 1861510..1862415 Aggregatibacter actinomycetemcomitans D11S-1 8537653 YP_003256508.1 CDS D11S_1935 NC_013416.1 1862506 1862880 R identified by Glimmer3; putative; opacity-associated protein OapB complement(1862506..1862880) Aggregatibacter actinomycetemcomitans D11S-1 8537654 YP_003256509.1 CDS D11S_1936 NC_013416.1 1862942 1864255 R identified by Glimmer3; putative; opacity-associated protein OapA complement(1862942..1864255) Aggregatibacter actinomycetemcomitans D11S-1 8537655 YP_003256510.1 CDS D11S_1937 NC_013416.1 1864426 1865457 R identified by Glimmer3; putative; DNA repair protein RecO complement(1864426..1865457) Aggregatibacter actinomycetemcomitans D11S-1 8537656 YP_003256511.1 CDS D11S_1938 NC_013416.1 1865522 1866043 D identified by Glimmer3; putative; elongation factor P 1865522..1866043 Aggregatibacter actinomycetemcomitans D11S-1 8537657 YP_003256512.1 CDS D11S_1939 NC_013416.1 1866123 1866290 D identified by Glimmer3; putative; hypothetical protein 1866123..1866290 Aggregatibacter actinomycetemcomitans D11S-1 8537658 YP_003256513.1 CDS D11S_1940 NC_013416.1 1866373 1867749 D catalyzes the formation of phenol and pyruvate from tyrosine; tyrosine phenol-lyase 1866373..1867749 Aggregatibacter actinomycetemcomitans D11S-1 8537659 YP_003256514.1 CDS D11S_1941 NC_013416.1 1867911 1869125 D identified by Glimmer3; putative; TyrP 1867911..1869125 Aggregatibacter actinomycetemcomitans D11S-1 8537660 YP_003256515.1 CDS D11S_1942 NC_013416.1 1869191 1869868 R identified by Glimmer3; putative; helix-turn-helix containing protein complement(1869191..1869868) Aggregatibacter actinomycetemcomitans D11S-1 8537661 YP_003256516.1 CDS D11S_1943 NC_013416.1 1869931 1870437 R identified by Glimmer3; putative; hypothetical protein complement(1869931..1870437) Aggregatibacter actinomycetemcomitans D11S-1 8537662 YP_003256517.1 CDS D11S_1944 NC_013416.1 1870430 1871161 R catalyzes the formation of 2,3=diacylglucosamine 1-phosphate from UDP-2,3=diacylglucosamine; UDP-2,3-diacylglucosamine hydrolase complement(1870430..1871161) Aggregatibacter actinomycetemcomitans D11S-1 8537663 YP_003256518.1 CDS D11S_1945 NC_013416.1 1871272 1872015 D identified by Glimmer3; putative; 1-acyl-sn-glycerol-3-phosphate acyltransferase 1871272..1872015 Aggregatibacter actinomycetemcomitans D11S-1 8537664 YP_003256519.1 CDS D11S_1946 NC_013416.1 1872023 1873435 D identified by Glimmer3; putative; protein SufI 1872023..1873435 Aggregatibacter actinomycetemcomitans D11S-1 8537665 YP_003256520.1 CDS D11S_1947 NC_013416.1 1873506 1874369 R identified by Glimmer3; putative; ribosomal protein L11 methyltransferase complement(1873506..1874369) Aggregatibacter actinomycetemcomitans D11S-1 8537666 YP_003256521.1 CDS D11S_1948 NC_013416.1 1874511 1875251 R identified by Glimmer3; putative; pyruvate formate-lyase 1-activating enzyme complement(1874511..1875251) Aggregatibacter actinomycetemcomitans D11S-1 8537667 YP_003256522.1 CDS D11S_1949 NC_013416.1 1875396 1877708 R identified by Glimmer3; putative; formate acetyltransferase complement(1875396..1877708) Aggregatibacter actinomycetemcomitans D11S-1 8537668 YP_003256523.1 CDS D11S_1950 NC_013416.1 1877807 1878658 R identified by Glimmer3; putative; putative formate transporter 1 complement(1877807..1878658) Aggregatibacter actinomycetemcomitans D11S-1 8537669 YP_003256524.1 CDS D11S_1951 NC_013416.1 1878971 1879321 D identified by Glimmer3; putative; histidine triad nucleotide-binding protein 2 1878971..1879321 Aggregatibacter actinomycetemcomitans D11S-1 8537670 YP_003256525.1 CDS D11S_1952 NC_013416.1 1879322 1879675 D identified by Glimmer3; putative; lipoprotein 1879322..1879675 Aggregatibacter actinomycetemcomitans D11S-1 8537671 YP_003256526.1 CDS D11S_1953 NC_013416.1 1879677 1880723 D hydrolyzes the terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides; beta-hexosaminidase 1879677..1880723 Aggregatibacter actinomycetemcomitans D11S-1 8537672 YP_003256527.1 CDS D11S_1954 NC_013416.1 1880725 1881285 D identified by Glimmer3; putative; 23S rRNA (uracil-5-)-methyltransferase RumB 1880725..1881285 Aggregatibacter actinomycetemcomitans D11S-1 8537673 YP_003256528.1 CDS rumB NC_013416.1 1881405 1881902 D RNA uridine methyltransferase B; catalyzes the formation of 5-methyl-uridine at position 747 in 23S rRNA; 23S rRNA methyluridine methyltransferase 1881405..1881902 Aggregatibacter actinomycetemcomitans D11S-1 8537674 YP_003256529.1 CDS D11S_1956 NC_013416.1 1882002 1882967 R catalyzes the formation of D-fructose 1,6-bisphosphate from D-fructose 6-phosphate in glycolysis; 6-phosphofructokinase complement(1882002..1882967) Aggregatibacter actinomycetemcomitans D11S-1 8537675 YP_003256530.1 CDS D11S_1957 NC_013416.1 1883029 1883949 R identified by Glimmer3; putative; ferrous-iron efflux pump FieF complement(1883029..1883949) Aggregatibacter actinomycetemcomitans D11S-1 8537676 YP_003256531.1 CDS D11S_1958 NC_013416.1 1883949 1884515 R identified by Glimmer3; putative; 6-phosphofructokinase complement(1883949..1884515) Aggregatibacter actinomycetemcomitans D11S-1 8537677 YP_003256532.1 CDS D11S_1959 NC_013416.1 1884517 1885296 R identified by Glimmer3; putative; hypothetical protein complement(1884517..1885296) Aggregatibacter actinomycetemcomitans D11S-1 8537678 YP_003256533.1 CDS D11S_1960 NC_013416.1 1885318 1885986 R identified by Glimmer3; putative; hypothetical protein complement(1885318..1885986) Aggregatibacter actinomycetemcomitans D11S-1 8537679 YP_003256534.1 CDS D11S_1961 NC_013416.1 1886272 1886655 D stress-induced glycyl radical protein that can replace an oxidatively damaged pyruvate formate-lyase subunit; autonomous glycyl radical cofactor GrcA 1886272..1886655 Aggregatibacter actinomycetemcomitans D11S-1 8537680 YP_003256535.1 CDS D11S_1962 NC_013416.1 1886819 1888615 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1886819..1888615 Aggregatibacter actinomycetemcomitans D11S-1 8537681 YP_003256536.1 CDS D11S_1963 NC_013416.1 1888626 1889648 D identified by Glimmer3; putative; signal peptidase I 1888626..1889648 Aggregatibacter actinomycetemcomitans D11S-1 8537682 YP_003256537.1 CDS rnc NC_013416.1 1889655 1890335 D cytoplasmic enzyme involved in processing rRNA and some mRNAs; substrates typically have dsRNA regions; forms a homodimer; have N-terminal nuclease and C-terminal RNA-binding domains; requires magnesium as preferred ion for activity; ribonuclease III 1889655..1890335 Aggregatibacter actinomycetemcomitans D11S-1 8537683 YP_003256538.1 CDS era NC_013416.1 1890332 1891240 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 1890332..1891240 Aggregatibacter actinomycetemcomitans D11S-1 8537684 YP_003256539.1 CDS trmE NC_013416.1 1891344 1892699 R in Escherichia coli this protein is involved in the biosynthesis of the hypermodified nucleoside 5-methylaminomethyl-2-thiouridine, which is found in the wobble position of some tRNAs and affects ribosomal frameshifting; shows potassium-dependent dimerization and GTP hydrolysis; also involved in regulation of glutamate-dependent acid resistance and activation of gadE; tRNA modification GTPase TrmE complement(1891344..1892699) Aggregatibacter actinomycetemcomitans D11S-1 8537685 YP_003256540.1 CDS D11S_1967 NC_013416.1 1892827 1894458 R functions to insert inner membrane proteins into the IM in Escherichia coli; interacts with transmembrane segments; functions in both Sec-dependent and -independent membrane insertion; similar to Oxa1p in mitochondria; putative inner membrane protein translocase component YidC complement(1892827..1894458) Aggregatibacter actinomycetemcomitans D11S-1 8537686 YP_003256541.1 CDS D11S_1968 NC_013416.1 1894458 1894721 R identified by Glimmer3; putative; hypothetical protein complement(1894458..1894721) Aggregatibacter actinomycetemcomitans D11S-1 8537687 YP_003256542.1 CDS D11S_1969 NC_013416.1 1894676 1895011 R identified by Glimmer3; putative; ribonuclease P protein component complement(1894676..1895011) Aggregatibacter actinomycetemcomitans D11S-1 8537688 YP_003256543.1 CDS rpmH NC_013416.1 1895057 1895191 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(1895057..1895191) Aggregatibacter actinomycetemcomitans D11S-1 8537689 YP_003256544.1 CDS D11S_1971 NC_013416.1 1895386 1895523 R identified by Glimmer3; putative; hypothetical protein complement(1895386..1895523) Aggregatibacter actinomycetemcomitans D11S-1 8537690 YP_003256545.1 CDS dnaA NC_013416.1 1895609 1896970 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 1895609..1896970 Aggregatibacter actinomycetemcomitans D11S-1 8537691 YP_003256546.1 CDS D11S_1973 NC_013416.1 1896978 1898081 D binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta 1896978..1898081 Aggregatibacter actinomycetemcomitans D11S-1 8537692 YP_003256547.1 CDS recF NC_013416.1 1898085 1899161 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 1898085..1899161 Aggregatibacter actinomycetemcomitans D11S-1 8537693 YP_003256548.1 CDS D11S_1975 NC_013416.1 1899208 1899963 R identified by Glimmer3; putative; methyltransferase domain-containing protein complement(1899208..1899963) Aggregatibacter actinomycetemcomitans D11S-1 8537694 YP_003256549.1 CDS D11S_1976 NC_013416.1 1900151 1900726 D identified by Glimmer3; putative; copper/zinc superoxide dismutase 1900151..1900726 Aggregatibacter actinomycetemcomitans D11S-1 8537695 YP_003256550.1 CDS D11S_1977 NC_013416.1 1900993 1901166 D identified by Glimmer3; putative; ISPsy8, transposase OrfA 1900993..1901166 Aggregatibacter actinomycetemcomitans D11S-1 8537696 YP_003256551.1 CDS D11S_1978 NC_013416.1 1901553 1901960 D identified by Glimmer3; putative; integrase catalytic subunit 1901553..1901960 Aggregatibacter actinomycetemcomitans D11S-1 8537697 YP_003256552.1 CDS D11S_1979 NC_013416.1 1902157 1902420 R identified by Glimmer3; putative; helix-turn-helix domain-containing protein complement(1902157..1902420) Aggregatibacter actinomycetemcomitans D11S-1 8537698 YP_003256553.1 CDS D11S_1980 NC_013416.1 1902571 1904208 D malic enzyme; oxaloacetate-decarboxylating; NAD-dependent; catalyzes the formation of pyruvate form malate; malate dehydrogenase 1902571..1904208 Aggregatibacter actinomycetemcomitans D11S-1 8537699 YP_003256554.1 CDS D11S_1981 NC_013416.1 1904428 1905627 R identified by Glimmer3; putative; hypothetical protein complement(1904428..1905627) Aggregatibacter actinomycetemcomitans D11S-1 8537700 YP_003256555.1 CDS D11S_1982 NC_013416.1 1905624 1906673 R identified by Glimmer3; putative; cytochrome C-type biogenesis protein complement(1905624..1906673) Aggregatibacter actinomycetemcomitans D11S-1 8537701 YP_003256556.1 CDS D11S_1983 NC_013416.1 1906670 1907200 R identified by Glimmer3; putative; thiol-disulfide interchange protein complement(1906670..1907200) Aggregatibacter actinomycetemcomitans D11S-1 8537702 YP_003256557.1 CDS D11S_1984 NC_013416.1 1907193 1909103 R identified by Glimmer3; putative; cytochrome c-type biogenesis protein CcmF complement(1907193..1909103) Aggregatibacter actinomycetemcomitans D11S-1 8537703 YP_003256558.1 CDS D11S_1985 NC_013416.1 1909125 1909493 D identified by Glimmer3; putative; hypothetical protein 1909125..1909493 Aggregatibacter actinomycetemcomitans D11S-1 8537704 YP_003256559.1 CDS D11S_1986 NC_013416.1 1909690 1910655 R identified by Glimmer3; putative; NrfD protein complement(1909690..1910655) Aggregatibacter actinomycetemcomitans D11S-1 8537705 YP_003256560.1 CDS D11S_1987 NC_013416.1 1910652 1911329 R identified by Glimmer3; putative; cytochrome c nitrite reductase, Fe-S protein complement(1910652..1911329) Aggregatibacter actinomycetemcomitans D11S-1 8537706 YP_003256561.1 CDS D11S_1988 NC_013416.1 1911326 1911991 R part of nitrite reductase complex; NrfB is active at high nitrate conditions; NrfA, B, C, and D are essential for the formate-dependent nitrite reduction to ammonia; cytochrome c nitrite reductase pentaheme subunit complement(1911326..1911991) Aggregatibacter actinomycetemcomitans D11S-1 8537707 YP_003256562.1 CDS nrfA NC_013416.1 1912065 1913588 R catalyzes the formate-dependent reduction of nitrite to ammonia; cytochrome C552; cytochrome c552 complement(1912065..1913588) Aggregatibacter actinomycetemcomitans D11S-1 8537708 YP_003256563.1 CDS D11S_1990 NC_013416.1 1914165 1914455 R identified by Glimmer3; putative; lipoprotein complement(1914165..1914455) Aggregatibacter actinomycetemcomitans D11S-1 8537709 YP_003256564.1 CDS D11S_1991 NC_013416.1 1914473 1915096 R identified by Glimmer3; putative; hypothetical protein complement(1914473..1915096) Aggregatibacter actinomycetemcomitans D11S-1 8537710 YP_003256565.1 CDS D11S_1992 NC_013416.1 1915231 1916154 R identified by Glimmer3; putative; TPR-repeat-containing protein complement(1915231..1916154) Aggregatibacter actinomycetemcomitans D11S-1 8537711 YP_003256566.1 CDS D11S_1993 NC_013416.1 1916154 1916606 R identified by Glimmer3; putative; cytochrome c-type biogenesis protein CcmH complement(1916154..1916606) Aggregatibacter actinomycetemcomitans D11S-1 8537712 YP_003256567.1 CDS D11S_1994 NC_013416.1 1916705 1917250 R identified by Glimmer3; putative; thiol-disulfide interchange protein complement(1916705..1917250) Aggregatibacter actinomycetemcomitans D11S-1 8537713 YP_003256568.1 CDS D11S_1995 NC_013416.1 1917279 1919237 R identified by Glimmer3; putative; cytochrome c-type biogenesis protein CcmF complement(1917279..1919237) Aggregatibacter actinomycetemcomitans D11S-1 8537714 YP_003256569.1 CDS D11S_1996 NC_013416.1 1919237 1919755 R CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE complement(1919237..1919755) Aggregatibacter actinomycetemcomitans D11S-1 8537715 YP_003256570.1 CDS D11S_1997 NC_013416.1 1919752 1919958 R identified by Glimmer3; putative; Heme exporter protein CcmD complement(1919752..1919958) Aggregatibacter actinomycetemcomitans D11S-1 8537716 YP_003256571.1 CDS D11S_1998 NC_013416.1 1919976 1920713 R identified by Glimmer3; putative; CcmC complement(1919976..1920713) Aggregatibacter actinomycetemcomitans D11S-1 8537717 YP_003256572.1 CDS D11S_1999 NC_013416.1 1920724 1921389 R identified by Glimmer3; putative; heme exporter protein CcmB complement(1920724..1921389) Aggregatibacter actinomycetemcomitans D11S-1 8537718 YP_003256573.1 CDS D11S_2000 NC_013416.1 1921394 1922029 R ATP-binding protein; required for proper cytochrome c maturation; cytochrome c biogenesis protein CcmA complement(1921394..1922029) Aggregatibacter actinomycetemcomitans D11S-1 8537719 YP_003256574.1 CDS D11S_2001 NC_013416.1 1922201 1922986 R identified by Glimmer3; putative; bicyclomycin resistance protein complement(1922201..1922986) Aggregatibacter actinomycetemcomitans D11S-1 8537720 YP_003256575.1 CDS D11S_2002 NC_013416.1 1922983 1923393 R identified by Glimmer3; putative; bicyclomycin resistance protein complement(1922983..1923393) Aggregatibacter actinomycetemcomitans D11S-1 8537721 YP_003256576.1 CDS D11S_2003 NC_013416.1 1923398 1924099 R identified by Glimmer3; putative; ribosomal small subunit pseudouridine synthase A complement(1923398..1924099) Aggregatibacter actinomycetemcomitans D11S-1 8537722 YP_003256577.1 CDS D11S_2004 NC_013416.1 1924141 1924323 D identified by Glimmer3; putative; hypothetical protein 1924141..1924323 Aggregatibacter actinomycetemcomitans D11S-1 8537723 YP_003256578.1 CDS D11S_2005 NC_013416.1 1924316 1926580 D NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme 1924316..1926580 Aggregatibacter actinomycetemcomitans D11S-1 8537724 YP_003256579.1 CDS D11S_2006 NC_013416.1 1926725 1927369 D identified by Glimmer3; putative; superoxide dismutase 1926725..1927369 Aggregatibacter actinomycetemcomitans D11S-1 8537725 YP_003256580.1 CDS D11S_2007 NC_013416.1 1927780 1928571 D identified by Glimmer3; putative; lipoprotein 1927780..1928571 Aggregatibacter actinomycetemcomitans D11S-1 8537726 YP_003256581.1 CDS D11S_2008 NC_013416.1 1928773 1929600 R identified by Glimmer3; putative; zinc protease complement(1928773..1929600) Aggregatibacter actinomycetemcomitans D11S-1 8537727 YP_003256582.1 CDS D11S_2009 NC_013416.1 1929740 1930183 D identified by Glimmer3; putative; LysM domain/BON superfamily protein 1929740..1930183 Aggregatibacter actinomycetemcomitans D11S-1 8537728 YP_003256583.1 CDS D11S_2010 NC_013416.1 1930273 1930869 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsX; putative glycerol-3-phosphate acyltransferase PlsY complement(1930273..1930869) Aggregatibacter actinomycetemcomitans D11S-1 8537729 YP_003256584.1 CDS D11S_2011 NC_013416.1 1930966 1931319 D identified by Glimmer3; putative; dihydroneopterin aldolase 1930966..1931319 Aggregatibacter actinomycetemcomitans D11S-1 8537730 YP_003256585.1 CDS D11S_2012 NC_013416.1 1931340 1932770 D YfhD; uncharacterized member of the transglycosylase slt family; part of the rob operon, which plays a role in cellular resistance to antibiotics, bactericidal agents, and organic solvents; unknown function; putative transglycosylase 1931340..1932770 Aggregatibacter actinomycetemcomitans D11S-1 8537731 YP_003256586.1 CDS D11S_2013 NC_013416.1 1932781 1932927 D identified by Glimmer3; putative; hypothetical protein 1932781..1932927 Aggregatibacter actinomycetemcomitans D11S-1 8537732 YP_003256587.1 CDS D11S_2014 NC_013416.1 1932970 1933509 R disulfide oxidoreductase; integral membrane protein; required for perioplasmic disulfide bond formation; oxidizes DsbA protein; disulfide bond formation protein B complement(1932970..1933509) Aggregatibacter actinomycetemcomitans D11S-1 8537733 YP_003256588.1 CDS nhaB NC_013416.1 1933533 1935077 R involved in regulation of intracellular pH under alkaline conditions; sodium/proton antiporter complement(1933533..1935077) Aggregatibacter actinomycetemcomitans D11S-1 8537734 YP_003256589.1 CDS D11S_2016 NC_013416.1 1935272 1936003 D Multifunctional regulator of fatty acid metabolism; fatty acid metabolism regulator 1935272..1936003 Aggregatibacter actinomycetemcomitans D11S-1 8537735 YP_003256590.1 CDS D11S_2017 NC_013416.1 1936124 1937338 R broad specificity; family IV; in Corynebacterium glutamicum this protein can use glutamate, 2-aminobutyrate, and aspartate as amino donors and pyruvate as the acceptor; aminotransferase AlaT complement(1936124..1937338) Aggregatibacter actinomycetemcomitans D11S-1 8537736 YP_003256591.1 CDS D11S_2018 NC_013416.1 1937455 1938759 D identified by Glimmer3; putative; menaquinone-specific isochorismate synthase 1937455..1938759 Aggregatibacter actinomycetemcomitans D11S-1 8537737 YP_003256592.1 CDS D11S_2019 NC_013416.1 1938750 1940456 D SEPHCHC synthase; forms 5-enolpyruvoyl-6-hydroxy-2-succinyl-cyclohex-3-ene-1- carboxylate from 2-oxoglutarate and isochorismate in menaquinone biosynthesis; 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase 1938750..1940456 Aggregatibacter actinomycetemcomitans D11S-1 8537738 YP_003256593.1 CDS D11S_2020 NC_013416.1 1940509 1941258 D catalyzes the hydrolysis of the thioester bond in palmitoyl-CoA; acyl-CoA thioester hydrolase YfbB 1940509..1941258 Aggregatibacter actinomycetemcomitans D11S-1 8537739 YP_003256594.1 CDS rpsO NC_013416.1 1941354 1941623 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 1941354..1941623 Aggregatibacter actinomycetemcomitans D11S-1 8537740 YP_003256595.1 CDS D11S_2022 NC_013416.1 1941831 1942985 D catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase 1941831..1942985 Aggregatibacter actinomycetemcomitans D11S-1 8537741 YP_003256596.1 CDS D11S_2023 NC_013416.1 1943013 1943555 D identified by Glimmer3; putative; hypothetical protein 1943013..1943555 Aggregatibacter actinomycetemcomitans D11S-1 8537742 YP_003256597.1 CDS D11S_2024 NC_013416.1 1943712 1944953 D identified by Glimmer3; putative; serine transporter 1943712..1944953 Aggregatibacter actinomycetemcomitans D11S-1 8537743 YP_003256598.1 CDS D11S_2025 NC_013416.1 1945046 1946410 D identified by Glimmer3; putative; L-serine ammonia-lyase 1945046..1946410 Aggregatibacter actinomycetemcomitans D11S-1 8537744 YP_003256599.1 CDS ansB NC_013416.1 1946591 1947640 R catalyzes the formation of aspartate from asparagine, periplasmic; regulated by cyclic AMP receptor protein (CRP) and also induced by anaerobiosis; L-asparaginase II complement(1946591..1947640) Aggregatibacter actinomycetemcomitans D11S-1 8537745 YP_003256600.1 CDS D11S_2027 NC_013416.1 1947935 1949074 D 23S rRNA m2A2503 methyltransferase; methylates the C2 position of the A2530 nucleotide in 23S rRNA; may be involved in antibiotic resistance; ribosomal RNA large subunit methyltransferase N 1947935..1949074 Aggregatibacter actinomycetemcomitans D11S-1 8537746 YP_003256601.1 CDS D11S_2028 NC_013416.1 1949096 1949647 D identified by Glimmer3; putative; type IV pilus biogenesis/stability protein PilW 1949096..1949647 Aggregatibacter actinomycetemcomitans D11S-1 8537747 YP_003256602.1 CDS D11S_2029 NC_013416.1 1949791 1950846 D identified by Glimmer3; putative; hypothetical protein 1949791..1950846 Aggregatibacter actinomycetemcomitans D11S-1 8537748 YP_003256603.1 CDS ispG NC_013416.1 1950858 1951961 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1950858..1951961 Aggregatibacter actinomycetemcomitans D11S-1 8537749 YP_003256604.1 CDS hisS NC_013416.1 1951983 1953260 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1951983..1953260 Aggregatibacter actinomycetemcomitans D11S-1 8537750 YP_003256605.1 CDS D11S_2032 NC_013416.1 1953271 1953885 D identified by Glimmer3; putative; hypothetical protein 1953271..1953885 Aggregatibacter actinomycetemcomitans D11S-1 8537751 YP_003256606.1 CDS D11S_2033 NC_013416.1 1953938 1954390 D identified by Glimmer3; putative; isoprenylcysteine carboxyl methyltransferase 1953938..1954390 Aggregatibacter actinomycetemcomitans D11S-1 8537752 YP_003256607.1 CDS D11S_2034 NC_013416.1 1954396 1955100 R identified by Glimmer3; putative; DnaA regulatory inactivator Hda complement(1954396..1955100) Aggregatibacter actinomycetemcomitans D11S-1 8537753 YP_003256608.1 CDS D11S_2035 NC_013416.1 1955086 1955223 D identified by Glimmer3; putative; hypothetical protein 1955086..1955223 Aggregatibacter actinomycetemcomitans D11S-1 8537754 YP_003256609.1 CDS D11S_2036 NC_013416.1 1955220 1956473 R identified by Glimmer3; putative; uracil permease complement(1955220..1956473) Aggregatibacter actinomycetemcomitans D11S-1 8537755 YP_003256610.1 CDS D11S_2037 NC_013416.1 1956597 1957223 R identified by Glimmer3; putative; uracil phosphoribosyltransferase complement(1956597..1957223) Aggregatibacter actinomycetemcomitans D11S-1 8537756 YP_003256611.1 CDS D11S_2038 NC_013416.1 1957358 1959205 R identified by Glimmer3; putative; peptidyl-prolyl cis-trans isomerase D complement(1957358..1959205) Aggregatibacter actinomycetemcomitans D11S-1 8537757 YP_003256612.1 CDS D11S_2039 NC_013416.1 1959338 1961611 R Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; bifunctional glutamate--cysteine ligase/glutathione synthetase complement(1959338..1961611) Aggregatibacter actinomycetemcomitans D11S-1 8537758 YP_003256613.1 CDS D11S_2040 NC_013416.1 1961608 1961739 R identified by Glimmer3; putative; hypothetical protein complement(1961608..1961739) Aggregatibacter actinomycetemcomitans D11S-1 8537759 YP_003256614.1 CDS D11S_2041 NC_013416.1 1961843 1963444 D identified by Glimmer3; putative; Dca 1961843..1963444 Aggregatibacter actinomycetemcomitans D11S-1 8537760 YP_003256615.1 CDS clpP NC_013416.1 1963701 1964267 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1963701..1964267 Aggregatibacter actinomycetemcomitans D11S-1 8537761 YP_003256616.1 CDS clpX NC_013416.1 1964277 1965518 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1964277..1965518 Aggregatibacter actinomycetemcomitans D11S-1 8537762 YP_003256617.1 CDS D11S_2044 NC_013416.1 1965581 1965904 R identified by Glimmer3; putative; putative DNA-binding protein complement(1965581..1965904) Aggregatibacter actinomycetemcomitans D11S-1 8537763 YP_003256618.1 CDS D11S_2045 NC_013416.1 1965897 1966061 R identified by Glimmer3; putative; hypothetical protein complement(1965897..1966061) Aggregatibacter actinomycetemcomitans D11S-1 8537764 YP_003256619.1 CDS D11S_2046 NC_013416.1 1966364 1967209 R identified by Glimmer3; putative; membrane protein YoaT complement(1966364..1967209) Aggregatibacter actinomycetemcomitans D11S-1 8537765 YP_003256620.1 CDS D11S_2047 NC_013416.1 1967282 1969441 R identified by Glimmer3; putative; copper-translocating P-type ATPase complement(1967282..1969441) Aggregatibacter actinomycetemcomitans D11S-1 8537766 YP_003256621.1 CDS D11S_2048 NC_013416.1 1969528 1969740 R identified by Glimmer3; putative; heavy metal-binding protein complement(1969528..1969740) Aggregatibacter actinomycetemcomitans D11S-1 8537767 YP_003256622.1 CDS D11S_2049 NC_013416.1 1969835 1970221 D identified by Glimmer3; putative; transcriptional regulator MerR family protein 1969835..1970221 Aggregatibacter actinomycetemcomitans D11S-1 8537768 YP_003256623.1 CDS D11S_2050 NC_013416.1 1970492 1971574 D identified by Glimmer3; putative; type I modification enzyme 1970492..1971574 Aggregatibacter actinomycetemcomitans D11S-1 8537769 YP_003256624.1 CDS D11S_2051 NC_013416.1 1971588 1971809 D identified by Glimmer3; putative; type I restriction enzyme 1971588..1971809 Aggregatibacter actinomycetemcomitans D11S-1 8537770 YP_003256625.1 CDS D11S_2052 NC_013416.1 1972137 1972973 R identified by Glimmer3; putative; protein YaeB complement(1972137..1972973) Aggregatibacter actinomycetemcomitans D11S-1 8537771 YP_003256626.1 CDS D11S_2053 NC_013416.1 1973101 1974006 D catalyzes the formation of dimethylmenaquinone from 1,4-dihydroxy-2-naphthoate and octaprenyl diphosphate; 1,4-dihydroxy-2-naphthoate octaprenyltransferase 1973101..1974006 Aggregatibacter actinomycetemcomitans D11S-1 8537772 YP_003256627.1 CDS D11S_2054 NC_013416.1 1974057 1974557 D regulator of RNase E; increases half-life and abundance of RNAs; interacts with RNase E possibly inhibiting catalytic activity; ribonuclease activity regulator protein RraA 1974057..1974557 Aggregatibacter actinomycetemcomitans D11S-1 8537773 YP_003256628.1 CDS D11S_2055 NC_013416.1 1974578 1974742 D identified by Glimmer3; putative; hypothetical protein 1974578..1974742 Aggregatibacter actinomycetemcomitans D11S-1 8537774 YP_003256629.1 CDS D11S_2056 NC_013416.1 1974747 1975712 D identified by Glimmer3; putative; transporter, NadC family 1974747..1975712 Aggregatibacter actinomycetemcomitans D11S-1 8537775 YP_003256630.1 CDS D11S_2057 NC_013416.1 1975686 1976219 R identified by Glimmer3; putative; hypothetical protein complement(1975686..1976219) Aggregatibacter actinomycetemcomitans D11S-1 8537776 YP_003256631.1 CDS D11S_2058 NC_013416.1 1976340 1977701 D identified by Glimmer3; putative; PmbA protein 1976340..1977701 Aggregatibacter actinomycetemcomitans D11S-1 8537777 YP_003256632.1 CDS D11S_2059 NC_013416.1 1977940 1978479 D identified by Glimmer3; putative; hypoxanthine-guanine phosphoribosyltransferase 1977940..1978479 Aggregatibacter actinomycetemcomitans D11S-1 8537778 YP_003256633.1 CDS D11S_2060 NC_013416.1 1978549 1979688 R identified by Glimmer3; putative; glycerate kinase complement(1978549..1979688) Aggregatibacter actinomycetemcomitans D11S-1 8537779 YP_003256634.1 CDS D11S_2061 NC_013416.1 1979685 1980959 R identified by Glimmer3; putative; gluconate:H+ symporter transporter complement(1979685..1980959) Aggregatibacter actinomycetemcomitans D11S-1 8537780 YP_003256635.1 CDS D11S_2062 NC_013416.1 1981091 1982194 R identified by Glimmer3; putative; carbohydrate diacid regulator complement(1981091..1982194) Aggregatibacter actinomycetemcomitans D11S-1 8537781 YP_003256636.1 CDS D11S_2063 NC_013416.1 1982415 1983110 D identified by Glimmer3; putative; nucleotide sugar dehydrogenase 1982415..1983110 Aggregatibacter actinomycetemcomitans D11S-1 8537782 YP_003256637.1 CDS D11S_2064 NC_013416.1 1983194 1984981 R identified by Glimmer3; putative; cold-shock deAd box protein a complement(1983194..1984981) Aggregatibacter actinomycetemcomitans D11S-1 8537783 YP_003256638.1 CDS D11S_2065 NC_013416.1 1985108 1986010 R lipoprotein that appears to be involved in cell division; interacts with the periplasmic protease Prc and may be activated by protease processing; lipoprotein NlpI complement(1985108..1986010) Aggregatibacter actinomycetemcomitans D11S-1 8537784 YP_003256639.1 CDS D11S_2066 NC_013416.1 1986095 1988326 R identified by Glimmer3; putative; polynucleotide phosphorylase/polyadenylase complement(1986095..1988326) Aggregatibacter actinomycetemcomitans D11S-1 8537785 YP_003256640.1 CDS D11S_2067 NC_013416.1 1988518 1988988 D identified by Glimmer3; putative; EbgC protein 1988518..1988988 Aggregatibacter actinomycetemcomitans D11S-1 8537786 YP_003256641.1 CDS D11S_2068 NC_013416.1 1988977 1989102 R identified by Glimmer3; putative; hypothetical protein complement(1988977..1989102) Aggregatibacter actinomycetemcomitans D11S-1 8537787 YP_003256642.1 CDS D11S_2069 NC_013416.1 1989462 1990115 R identified by Glimmer3; putative; N-acetyl-anhydromuranmyl-L-alanine amidase complement(1989462..1990115) Aggregatibacter actinomycetemcomitans D11S-1 8537788 YP_003256643.1 CDS D11S_2070 NC_013416.1 1990138 1990590 D identified by Glimmer3; putative; PilA 1990138..1990590 Aggregatibacter actinomycetemcomitans D11S-1 8537789 YP_003256644.1 CDS D11S_2071 NC_013416.1 1990617 1992026 D identified by Glimmer3; putative; type IV pilus assembly protein 1990617..1992026 Aggregatibacter actinomycetemcomitans D11S-1 8537790 YP_003256645.1 CDS D11S_2072 NC_013416.1 1992019 1993242 D identified by Glimmer3; putative; PilC 1992019..1993242 Aggregatibacter actinomycetemcomitans D11S-1 8537791 YP_003256646.1 CDS D11S_2073 NC_013416.1 1993242 1993928 D identified by Glimmer3; putative; HopD 1993242..1993928 Aggregatibacter actinomycetemcomitans D11S-1 8537792 YP_003256647.1 CDS coaE NC_013416.1 1993978 1994601 D catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; involved in coenzyme A biosynthesis; dephospho-CoA kinase 1993978..1994601 Aggregatibacter actinomycetemcomitans D11S-1 8537793 YP_003256648.1 CDS D11S_2075 NC_013416.1 1994591 1994803 D identified by Glimmer3; putative; zinc-binding protein 1994591..1994803 Aggregatibacter actinomycetemcomitans D11S-1 8537794 YP_003256649.1 CDS D11S_2076 NC_013416.1 1994803 1995075 D identified by Glimmer3; putative; acetyltransferase 1994803..1995075 Aggregatibacter actinomycetemcomitans D11S-1 8537795 YP_003256650.1 CDS D11S_2077 NC_013416.1 1995472 1996845 D identified by Glimmer3; putative; AlsT protein 1995472..1996845 Aggregatibacter actinomycetemcomitans D11S-1 8537796 YP_003256651.1 CDS D11S_2078 NC_013416.1 1997074 1997397 D identified by Glimmer3; putative; sigma 54 modulation protein/ribosomal protein S30EA 1997074..1997397 Aggregatibacter actinomycetemcomitans D11S-1 8537797 YP_003256652.1 CDS D11S_2079 NC_013416.1 1997546 1998100 D identified by Glimmer3; putative; naphthoate synthase 1997546..1998100 Aggregatibacter actinomycetemcomitans D11S-1 8537798 YP_003256653.1 CDS fis NC_013416.1 1998716 1999015 R Stimulates excision of phage lambda; affects Mu development; acts as an activator of rRNA and iRNA transcription; DNA-binding protein Fis complement(1998716..1999015) Aggregatibacter actinomycetemcomitans D11S-1 8537799 YP_003256654.1 CDS D11S_2081 NC_013416.1 1999009 2000058 R identified by Glimmer3; putative; tRNA-dihydrouridine synthase B complement(1999009..2000058) Aggregatibacter actinomycetemcomitans D11S-1 8537800 YP_003256655.1 CDS D11S_2082 NC_013416.1 2000303 2001187 R identified by Glimmer3; putative; ribosomal protein L11 methyltransferase complement(2000303..2001187) Aggregatibacter actinomycetemcomitans D11S-1 8537801 YP_003256656.1 CDS D11S_2083 NC_013416.1 2001200 2001742 R identified by Glimmer3; putative; sodium/panthothenate symporter complement(2001200..2001742) Aggregatibacter actinomycetemcomitans D11S-1 8537802 YP_003256657.1 CDS panF NC_013416.1 2001761 2003197 R mediates high affinitiy panthothenate transport which is stimulated by the presence of sodium ions; member of SSS family of sodium/solute symporters; the imported panthothenate is phosphorylated by panthothenate kinase; sodium/panthothenate symporter complement(2001761..2003197) Aggregatibacter actinomycetemcomitans D11S-1 8537803 YP_003256658.1 CDS D11S_2085 NC_013416.1 2003194 2003466 R identified by Glimmer3; putative; acetyl-CoA carboxylase biotin carboxylase subunit complement(2003194..2003466) Aggregatibacter actinomycetemcomitans D11S-1 8537804 YP_003256659.1 CDS D11S_2086 NC_013416.1 2003490 2004878 R identified by Glimmer3; putative; chromosomal replication initiation protein complement(2003490..2004878) Aggregatibacter actinomycetemcomitans D11S-1 8537805 YP_003256660.1 CDS D11S_2087 NC_013416.1 2004997 2005761 R identified by Glimmer3; putative; hypothetical protein complement(2004997..2005761) Aggregatibacter actinomycetemcomitans D11S-1 8537806 YP_003256661.1 CDS D11S_2088 NC_013416.1 2005816 2005950 R identified by Glimmer3; putative; hypothetical protein complement(2005816..2005950) Aggregatibacter actinomycetemcomitans D11S-1 8537807 YP_003256662.1 CDS D11S_2089 NC_013416.1 2006059 2007405 R an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit complement(2006059..2007405) Aggregatibacter actinomycetemcomitans D11S-1 8537808 YP_003256663.1 CDS D11S_2090 NC_013416.1 2007448 2007915 R identified by Glimmer3; putative; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(2007448..2007915) Aggregatibacter actinomycetemcomitans D11S-1 8537809 YP_003256664.1 CDS D11S_2091 NC_013416.1 2007932 2008084 D identified by Glimmer3; putative; hypothetical protein 2007932..2008084 Aggregatibacter actinomycetemcomitans D11S-1 8537810 YP_003256665.1 CDS D11S_2092 NC_013416.1 2008039 2008515 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(2008039..2008515) Aggregatibacter actinomycetemcomitans D11S-1 8537811 YP_003256666.1 CDS D11S_2093 NC_013416.1 2008614 2009615 R catalyzes the dehydration of 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid to form O-succinylbenzoate; O-succinylbenzoate synthase complement(2008614..2009615) Aggregatibacter actinomycetemcomitans D11S-1 8537812 YP_003256667.1 CDS D11S_2094 NC_013416.1 2009596 2009925 R identified by Glimmer3; putative; DNA polymerase, beta domain-containing protein complement(2009596..2009925) Aggregatibacter actinomycetemcomitans D11S-1 8537813 YP_003256668.1 CDS D11S_2095 NC_013416.1 2009907 2010326 R identified by Glimmer3; putative; similar to HI0074; Nucleotidyltransferase substrate binding protein complement(2009907..2010326) Aggregatibacter actinomycetemcomitans D11S-1 8537814 YP_003256669.1 CDS D11S_2096 NC_013416.1 2010366 2011223 R catalyzes the formation of 1,4-dihydroxy-2-naphthoate from O-succinylbenzoyl-CoA; naphthoate synthase complement(2010366..2011223) Aggregatibacter actinomycetemcomitans D11S-1 8537815 YP_003256670.1 CDS tpiA NC_013416.1 2011335 2012102 R Reversibly isomerizes the ketone sugar dihydroxyacetone phosphate to the aldehyde sugar glyceraldehyde-3-phosphate; triosephosphate isomerase complement(2011335..2012102) Aggregatibacter actinomycetemcomitans D11S-1 8537816 YP_003256671.1 CDS D11S_2098 NC_013416.1 2012275 2012718 D identified by Glimmer3; putative; WecD protein 2012275..2012718 Aggregatibacter actinomycetemcomitans D11S-1 8537817 YP_003256672.1 CDS D11S_2099 NC_013416.1 2012792 2014159 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(2012792..2014159) Aggregatibacter actinomycetemcomitans D11S-1 8537818 YP_003256673.1 CDS D11S_2100 NC_013416.1 2014178 2014612 R identified by Glimmer3; putative; hypothetical protein complement(2014178..2014612) Aggregatibacter actinomycetemcomitans D11S-1 8537819 YP_003256674.1 CDS D11S_2101 NC_013416.1 2014625 2015185 R identified by Glimmer3; putative protein in HemN 3'region; hypothetical protein complement(2014625..2015185) Aggregatibacter actinomycetemcomitans D11S-1 8537820 YP_003256675.1 CDS D11S_2102 NC_013416.1 2015286 2015813 R identified by Glimmer3; putative; tRNA-specific adenosine deaminase complement(2015286..2015813) Aggregatibacter actinomycetemcomitans D11S-1 8537821 YP_003256676.1 CDS thyA NC_013416.1 2016139 2016990 R ThyA; catalyzes formation of dTMP and 7,8-dihydrofolate from 5,10-methylenetetrahydrofolate and dUMP; involved in deoxyribonucleotide biosynthesis; there are 2 copies in some Bacilli, one of which appears to be phage-derived; thymidylate synthase complement(2016139..2016990) Aggregatibacter actinomycetemcomitans D11S-1 8537822 YP_003256677.1 CDS D11S_2104 NC_013416.1 2016987 2017784 R transfers the N-acyl diglyceride moiety to the prospective N-terminal cysteine in prolipoprotein; prolipoprotein diacylglyceryl transferase complement(2016987..2017784) Aggregatibacter actinomycetemcomitans D11S-1 8537823 YP_003256678.1 CDS D11S_2105 NC_013416.1 2017793 2018590 R identified by Glimmer3; putative; hypothetical protein complement(2017793..2018590) Aggregatibacter actinomycetemcomitans D11S-1 8537824 YP_003256679.1 CDS D11S_2106 NC_013416.1 2018593 2019192 R identified by Glimmer3; putative; (Di)nucleoside polyphosphate hydrolase complement(2018593..2019192) Aggregatibacter actinomycetemcomitans D11S-1 8537825 YP_003256680.1 CDS D11S_2107 NC_013416.1 2019412 2019831 D cytoplasmic mutarotase that catalyzes the conversion between beta-pyran and beta-furan forms of D-ribose; RbsD is required for efficient ribose utilization in E. coli; rbsD-mutant E. coli strains are unable to use ribose as a sole carbon source; D-ribose pyranase 2019412..2019831 Aggregatibacter actinomycetemcomitans D11S-1 8537826 YP_003256681.1 CDS D11S_2108 NC_013416.1 2019842 2021350 D with RbsBCD acts to import ribose into the cell; RbsA contains 2 ATP-binding domain; D-ribose transporter ATP binding protein 2019842..2021350 Aggregatibacter actinomycetemcomitans D11S-1 8537827 YP_003256682.1 CDS rbsC NC_013416.1 2021347 2022243 D functions to transport ribose at high affinity; forms a complex with RbsA2C2B; ribose ABC transporter permease 2021347..2022243 Aggregatibacter actinomycetemcomitans D11S-1 8537828 YP_003256683.1 CDS D11S_2110 NC_013416.1 2022333 2023214 D periplasmic substrate-binding component of the ATP-dependent ribose transport system; D-ribose transporter subunit RbsB 2022333..2023214 Aggregatibacter actinomycetemcomitans D11S-1 8537829 YP_003256684.1 CDS D11S_2111 NC_013416.1 2023297 2024229 D identified by Glimmer3; putative; ribokinase 2023297..2024229 Aggregatibacter actinomycetemcomitans D11S-1 8537830 YP_003256685.1 CDS D11S_2112 NC_013416.1 2024327 2024536 R identified by Glimmer3; putative; cold-shock DNA-binding domain-containing protein complement(2024327..2024536) Aggregatibacter actinomycetemcomitans D11S-1 8537831 YP_003256686.1 CDS D11S_2113 NC_013416.1 2024800 2024946 R identified by Glimmer3; putative; hypothetical protein complement(2024800..2024946) Aggregatibacter actinomycetemcomitans D11S-1 8537832 YP_003256687.1 CDS gltX NC_013416.1 2024983 2026428 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2024983..2026428) Aggregatibacter actinomycetemcomitans D11S-1 8537833 YP_003256688.1 CDS D11S_2118 NC_013416.1 2027116 2027904 D identified by Glimmer3; putative; glycosyltransferase sugar-binding domain-containing protein 2027116..2027904 Aggregatibacter actinomycetemcomitans D11S-1 8537837 YP_003256689.1 CDS D11S_2119 NC_013416.1 2028017 2029393 D catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase 2028017..2029393 Aggregatibacter actinomycetemcomitans D11S-1 8537839 YP_003256690.1 CDS D11S_2120 NC_013416.1 2029694 2031043 D converts 2-oxoglutarate to glutamate; in Escherichia coli this enzyme plays a role in glutamate synthesis when the cell is under energy restriction; uses NADPH; forms a homohexamer; glutamate dehydrogenase 2029694..2031043 Aggregatibacter actinomycetemcomitans D11S-1 8537840 YP_003256691.1 CDS D11S_2121 NC_013416.1 2031532 2032986 D identified by Glimmer3; putative; catalase 2031532..2032986 Aggregatibacter actinomycetemcomitans D11S-1 8537841 YP_003256692.1 CDS D11S_2122 NC_013416.1 2033660 2033818 R identified by Glimmer3; putative; hypothetical protein complement(2033660..2033818) Aggregatibacter actinomycetemcomitans D11S-1 8537842 YP_003256693.1 CDS dnaE NC_013416.1 2034116 2037592 R catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha complement(2034116..2037592) Aggregatibacter actinomycetemcomitans D11S-1 8537843 YP_003256694.1 CDS D11S_2124 NC_013416.1 2037557 2037736 D identified by Glimmer3; putative; hypothetical protein 2037557..2037736 Aggregatibacter actinomycetemcomitans D11S-1 8537844 YP_003256695.1 CDS D11S_2125 NC_013416.1 2037791 2039578 D identified by Glimmer3; putative; putative long-chain-fatty-acid--CoA ligase-like protein 2037791..2039578 Aggregatibacter actinomycetemcomitans D11S-1 8537845 YP_003256696.1 CDS D11S_2126 NC_013416.1 2039595 2039711 D identified by Glimmer3; putative; hypothetical protein 2039595..2039711 Aggregatibacter actinomycetemcomitans D11S-1 8537846 YP_003256697.1 CDS D11S_2127 NC_013416.1 2040461 2045824 D identified by Glimmer3; putative; hypothetical protein 2040461..2045824 Aggregatibacter actinomycetemcomitans D11S-1 8537847 YP_003256698.1 CDS D11S_2128 NC_013416.1 2046078 2048204 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 2046078..2048204 Aggregatibacter actinomycetemcomitans D11S-1 8537848 YP_003256699.1 CDS D11S_2129 NC_013416.1 2048385 2048504 D identified by Glimmer3; putative; hypothetical protein 2048385..2048504 Aggregatibacter actinomycetemcomitans D11S-1 8537849 YP_003256700.1 CDS D11S_2130 NC_013416.1 2048647 2048772 R identified by Glimmer3; putative; hypothetical protein complement(2048647..2048772) Aggregatibacter actinomycetemcomitans D11S-1 8537850 YP_003256701.1 CDS nrdG NC_013416.1 2048806 2049273 D activates anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions; anaerobic ribonucleotide reductase-activating protein 2048806..2049273 Aggregatibacter actinomycetemcomitans D11S-1 8537851 YP_003256702.1 CDS D11S_2132 NC_013416.1 2049300 2050088 R identified by Glimmer3; putative; putative deoxyribonuclease YjjV complement(2049300..2050088) Aggregatibacter actinomycetemcomitans D11S-1 8537852 YP_003256703.1 CDS D11S_2133 NC_013416.1 2050091 2050372 R identified by Glimmer3; putative; plasmid stabilization system protein complement(2050091..2050372) Aggregatibacter actinomycetemcomitans D11S-1 8537853 YP_003256704.1 CDS D11S_2134 NC_013416.1 2050365 2050520 R identified by Glimmer3; putative; hypothetical protein complement(2050365..2050520) Aggregatibacter actinomycetemcomitans D11S-1 8537854 YP_003256705.1 CDS D11S_2135 NC_013416.1 2050614 2051126 R identified by Glimmer3; putative; peptidyl-prolyl cis-trans isomerase B complement(2050614..2051126) Aggregatibacter actinomycetemcomitans D11S-1 8537855 YP_003256706.1 CDS cysS NC_013416.1 2051196 2052605 D catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase 2051196..2052605 Aggregatibacter actinomycetemcomitans D11S-1 8537856 YP_003256707.1 CDS D11S_2137 NC_013416.1 2052753 2053715 R catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase complement(2052753..2053715) Aggregatibacter actinomycetemcomitans D11S-1 8537857 YP_003256708.1 CDS D11S_2138 NC_013416.1 2053780 2054418 R lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B complement(2053780..2054418) Aggregatibacter actinomycetemcomitans D11S-1 8537858 YP_003256709.1 CDS D11S_2139 NC_013416.1 2054464 2054763 R identified by Glimmer3; putative; hypothetical protein complement(2054464..2054763) Aggregatibacter actinomycetemcomitans D11S-1 8537859 YP_003256710.1 CDS D11S_2140 NC_013416.1 2054836 2056026 R identified by Glimmer3; putative; DacC protein complement(2054836..2056026) Aggregatibacter actinomycetemcomitans D11S-1 8537860 YP_003256711.1 CDS D11S_2141 NC_013416.1 2056057 2056914 R identified by Glimmer3; putative; lipoprotein complement(2056057..2056914) Aggregatibacter actinomycetemcomitans D11S-1 8537861 YP_003256712.1 CDS D11S_2142 NC_013416.1 2056963 2058084 R identified by Glimmer3; putative; rod shape-determining protein RodA complement(2056963..2058084) Aggregatibacter actinomycetemcomitans D11S-1 8537862 YP_003256713.1 CDS D11S_2143 NC_013416.1 2058071 2060032 R identified by Glimmer3; putative; penicillin-binding protein 2 complement(2058071..2060032) Aggregatibacter actinomycetemcomitans D11S-1 8537863 YP_003256714.1 CDS D11S_2144 NC_013416.1 2060045 2060581 R identified by Glimmer3; putative; SPOUT methyltransferase superfamily protein complement(2060045..2060581) Aggregatibacter actinomycetemcomitans D11S-1 8537864 YP_003256715.1 CDS D11S_2145 NC_013416.1 2060572 2060880 R identified by Glimmer3; putative; iojap-like protein complement(2060572..2060880) Aggregatibacter actinomycetemcomitans D11S-1 8537865 YP_003256716.1 CDS D11S_2146 NC_013416.1 2060947 2062203 R enables ATP-dependent unwinding of double stranded RNA as a component of the RNA degradosome, a multi-enzyme complex important in RNA processing and messenger RNA degradation; ATP-dependent RNA helicase RhlB complement(2060947..2062203) Aggregatibacter actinomycetemcomitans D11S-1 8537866 YP_003256717.1 CDS rho NC_013416.1 2062528 2063766 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 2062528..2063766 Aggregatibacter actinomycetemcomitans D11S-1 8537867 YP_003256718.1 CDS D11S_2148 NC_013416.1 2063891 2065126 R identified by Glimmer3; putative; transporter protein complement(2063891..2065126) Aggregatibacter actinomycetemcomitans D11S-1 8537868 YP_003256719.1 CDS D11S_2149 NC_013416.1 2065213 2065326 D identified by Glimmer3; putative; hypothetical protein 2065213..2065326 Aggregatibacter actinomycetemcomitans D11S-1 8537869 YP_003256720.1 CDS acpP NC_013416.1 2065361 2065591 R carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein complement(2065361..2065591) Aggregatibacter actinomycetemcomitans D11S-1 8537870 YP_003256721.1 CDS fabG NC_013416.1 2065865 2066593 R catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-(acyl-carrier-protein) reductase complement(2065865..2066593) Aggregatibacter actinomycetemcomitans D11S-1 8537871 YP_003256722.1 CDS D11S_2152 NC_013416.1 2066618 2067556 R identified by Glimmer3; putative; malonyl CoA-acyl carrier protein transacylase complement(2066618..2067556) Aggregatibacter actinomycetemcomitans D11S-1 8537872 YP_003256723.1 CDS D11S_2153 NC_013416.1 2067663 2068613 R FabH; beta-ketoacyl-acyl carrier protein synthase III; catalyzes the condensation of acetyl-CoA with malonyl-ACP to initiate cycles of fatty acid elongation; differs from 3-oxoacyl-(acyl carrier protein) synthase I and II in that it utilizes CoA thioesters as primers rather than acyl-ACPs; 3-oxoacyl-(acyl carrier protein) synthase III complement(2067663..2068613) Aggregatibacter actinomycetemcomitans D11S-1 8537873 YP_003256724.1 CDS D11S_2154 NC_013416.1 2068660 2069679 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX complement(2068660..2069679) Aggregatibacter actinomycetemcomitans D11S-1 8537874 YP_003256725.1 CDS rpmF NC_013416.1 2069706 2069876 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(2069706..2069876) Aggregatibacter actinomycetemcomitans D11S-1 8537875 YP_003256726.1 CDS D11S_2156 NC_013416.1 2069893 2070417 R identified by Glimmer3; putative; hypothetical protein complement(2069893..2070417) Aggregatibacter actinomycetemcomitans D11S-1 8537876 YP_003256727.1 CDS D11S_2157 NC_013416.1 2070489 2071016 R identified by Glimmer3; putative; dethiobiotin synthase complement(2070489..2071016) Aggregatibacter actinomycetemcomitans D11S-1 8537877 YP_003256728.1 CDS D11S_2158 NC_013416.1 2071125 2071865 R identified by Glimmer3; putative; biotin biosynthesis protein BioC complement(2071125..2071865) Aggregatibacter actinomycetemcomitans D11S-1 8537878 YP_003256729.1 CDS D11S_2159 NC_013416.1 2071883 2072464 R identified by Glimmer3; putative; dithiobiotin synthetase complement(2071883..2072464) Aggregatibacter actinomycetemcomitans D11S-1 8537879 YP_003256730.1 CDS D11S_2160 NC_013416.1 2072920 2073177 R identified by Glimmer3; putative; hypothetical protein complement(2072920..2073177) Aggregatibacter actinomycetemcomitans D11S-1 8537880 YP_003256731.1 CDS D11S_2161 NC_013416.1 2073251 2073457 R identified by Glimmer3; putative; hypothetical protein complement(2073251..2073457) Aggregatibacter actinomycetemcomitans D11S-1 8537881 YP_003256732.1 CDS D11S_2162 NC_013416.1 2073458 2073799 R identified by Glimmer3; putative; hypothetical protein complement(2073458..2073799) Aggregatibacter actinomycetemcomitans D11S-1 8537882 YP_003256733.1 CDS D11S_2163 NC_013416.1 2073959 2074648 R identified by Glimmer3; putative; hypothetical protein complement(2073959..2074648) Aggregatibacter actinomycetemcomitans D11S-1 8537883 YP_003256734.1 CDS D11S_2164 NC_013416.1 2074666 2074932 R identified by Glimmer3; putative; hypothetical protein complement(2074666..2074932) Aggregatibacter actinomycetemcomitans D11S-1 8537884 YP_003256735.1 CDS D11S_2165 NC_013416.1 2075099 2075929 R identified by Glimmer3; putative; hypothetical protein complement(2075099..2075929) Aggregatibacter actinomycetemcomitans D11S-1 8537885 YP_003256736.1 CDS D11S_2166 NC_013416.1 2076055 2078838 R identified by Glimmer3; putative; hypothetical protein complement(2076055..2078838) Aggregatibacter actinomycetemcomitans D11S-1 8537886 YP_003256737.1 CDS D11S_2167 NC_013416.1 2078838 2079014 R identified by Glimmer3; putative; hypothetical protein complement(2078838..2079014) Aggregatibacter actinomycetemcomitans D11S-1 8537887 YP_003256738.1 CDS D11S_2168 NC_013416.1 2079048 2079293 R identified by Glimmer3; putative; tail assembly protein complement(2079048..2079293) Aggregatibacter actinomycetemcomitans D11S-1 8537888 YP_003256739.1 CDS D11S_2169 NC_013416.1 2079306 2080115 R identified by Glimmer3; putative; hypothetical protein complement(2079306..2080115) Aggregatibacter actinomycetemcomitans D11S-1 8537889 YP_003256740.1 CDS D11S_2170 NC_013416.1 2080179 2081858 R identified by Glimmer3; putative; hypothetical protein complement(2080179..2081858) Aggregatibacter actinomycetemcomitans D11S-1 8537890 YP_003256741.1 CDS D11S_2171 NC_013416.1 2081862 2082845 R identified by Glimmer3; putative; hypothetical protein complement(2081862..2082845) Aggregatibacter actinomycetemcomitans D11S-1 8537891 YP_003256742.1 CDS D11S_2172 NC_013416.1 2082845 2083801 R identified by Glimmer3; putative; hypothetical protein complement(2082845..2083801) Aggregatibacter actinomycetemcomitans D11S-1 8537892 YP_003256743.1 CDS D11S_2173 NC_013416.1 2083809 2087093 R identified by Glimmer3; putative; tail length tape measure protein complement(2083809..2087093) Aggregatibacter actinomycetemcomitans D11S-1 8537893 YP_003256744.1 CDS D11S_2174 NC_013416.1 2087106 2087321 D identified by Glimmer3; putative; hypothetical protein 2087106..2087321 Aggregatibacter actinomycetemcomitans D11S-1 8537894 YP_003256745.1 CDS D11S_2175 NC_013416.1 2087337 2087522 R identified by Glimmer3; putative; hypothetical protein complement(2087337..2087522) Aggregatibacter actinomycetemcomitans D11S-1 8537895 YP_003256746.1 CDS D11S_2176 NC_013416.1 2087525 2087950 R identified by Glimmer3; putative; hypothetical protein complement(2087525..2087950) Aggregatibacter actinomycetemcomitans D11S-1 8537896 YP_003256747.1 CDS D11S_2177 NC_013416.1 2088036 2088782 R identified by Glimmer3; putative; hypothetical protein complement(2088036..2088782) Aggregatibacter actinomycetemcomitans D11S-1 8537897 YP_003256748.1 CDS D11S_2178 NC_013416.1 2088769 2088960 R identified by Glimmer3; putative; hypothetical protein complement(2088769..2088960) Aggregatibacter actinomycetemcomitans D11S-1 8537898 YP_003256749.1 CDS D11S_2179 NC_013416.1 2088962 2089396 R identified by Glimmer3; putative; hypothetical protein complement(2088962..2089396) Aggregatibacter actinomycetemcomitans D11S-1 8537899 YP_003256750.1 CDS D11S_2180 NC_013416.1 2089396 2089803 R identified by Glimmer3; putative; Mu-like prophage protein GP36 complement(2089396..2089803) Aggregatibacter actinomycetemcomitans D11S-1 8537900 YP_003256751.1 CDS D11S_2181 NC_013416.1 2089803 2090234 R identified by Glimmer3; putative; hypothetical protein complement(2089803..2090234) Aggregatibacter actinomycetemcomitans D11S-1 8537901 YP_003256752.1 CDS D11S_2182 NC_013416.1 2090311 2091237 R identified by Glimmer3; putative; putative phage major head subunit complement(2090311..2091237) Aggregatibacter actinomycetemcomitans D11S-1 8537902 YP_003256753.1 CDS D11S_2183 NC_013416.1 2091230 2092309 R identified by Glimmer3; putative; I protein complement(2091230..2092309) Aggregatibacter actinomycetemcomitans D11S-1 8537903 YP_003256754.1 CDS D11S_2184 NC_013416.1 2092509 2092952 R identified by Glimmer3; putative; Mu-like phage G protein 1 complement(2092509..2092952) Aggregatibacter actinomycetemcomitans D11S-1 8537904 YP_003256755.1 CDS D11S_2185 NC_013416.1 2093087 2094391 R identified by Glimmer3; putative; F protein complement(2093087..2094391) Aggregatibacter actinomycetemcomitans D11S-1 8537905 YP_003256756.1 CDS D11S_2186 NC_013416.1 2094399 2095973 R identified by Glimmer3; putative; Mu-like phage gp29 complement(2094399..2095973) Aggregatibacter actinomycetemcomitans D11S-1 8537906 YP_003256757.1 CDS D11S_2187 NC_013416.1 2095983 2097587 R identified by Glimmer3; putative; Mu-like phage gp28 complement(2095983..2097587) Aggregatibacter actinomycetemcomitans D11S-1 8537907 YP_003256758.1 CDS D11S_2188 NC_013416.1 2097587 2098162 R identified by Glimmer3; putative; Mu-like phage gp27 complement(2097587..2098162) Aggregatibacter actinomycetemcomitans D11S-1 8537908 YP_003256759.1 CDS D11S_2189 NC_013416.1 2098185 2098484 R identified by Glimmer3; putative; Mu-like phage gp26 complement(2098185..2098484) Aggregatibacter actinomycetemcomitans D11S-1 8537909 YP_003256760.1 CDS D11S_2190 NC_013416.1 2098488 2098823 R identified by Glimmer3; putative; Mu-like phage gp25 complement(2098488..2098823) Aggregatibacter actinomycetemcomitans D11S-1 8537910 YP_003256761.1 CDS D11S_2191 NC_013416.1 2098820 2099038 R identified by Glimmer3; putative; hypothetical protein complement(2098820..2099038) Aggregatibacter actinomycetemcomitans D11S-1 8537911 YP_003256762.1 CDS D11S_2192 NC_013416.1 2099031 2099195 R identified by Glimmer3; putative; hypothetical protein complement(2099031..2099195) Aggregatibacter actinomycetemcomitans D11S-1 8537912 YP_003256763.1 CDS D11S_2193 NC_013416.1 2099158 2099442 R identified by Glimmer3; putative; hypothetical protein complement(2099158..2099442) Aggregatibacter actinomycetemcomitans D11S-1 8537913 YP_003256764.1 CDS D11S_2194 NC_013416.1 2099435 2099668 R identified by Glimmer3; putative; hypothetical protein complement(2099435..2099668) Aggregatibacter actinomycetemcomitans D11S-1 8537914 YP_003256765.1 CDS D11S_2195 NC_013416.1 2099971 2100516 R identified by Glimmer3; putative; putative N-acetylmuramoyl-L-alanine amidase complement(2099971..2100516) Aggregatibacter actinomycetemcomitans D11S-1 8537915 YP_003256766.1 CDS D11S_2196 NC_013416.1 2100599 2101018 R identified by Glimmer3; putative; Mu-like phage C protein, positive regulator of late transcription complement(2100599..2101018) Aggregatibacter actinomycetemcomitans D11S-1 8537916 YP_003256767.1 CDS D11S_2197 NC_013416.1 2101015 2101476 R identified by Glimmer3; putative; Mu-like phage E16 protein complement(2101015..2101476) Aggregatibacter actinomycetemcomitans D11S-1 8537917 YP_003256768.1 CDS D11S_2198 NC_013416.1 2101454 2101996 R identified by Glimmer3; putative; hypothetical protein complement(2101454..2101996) Aggregatibacter actinomycetemcomitans D11S-1 8537918 YP_003256769.1 CDS D11S_2199 NC_013416.1 2102593 2103072 R identified by Glimmer3; putative; metal dependent phosphohydrolase complement(2102593..2103072) Aggregatibacter actinomycetemcomitans D11S-1 8537919 YP_003256770.1 CDS D11S_2200 NC_013416.1 2103079 2103192 D identified by Glimmer3; putative; hypothetical protein 2103079..2103192 Aggregatibacter actinomycetemcomitans D11S-1 8537920 YP_003256771.1 CDS D11S_2201 NC_013416.1 2103172 2103732 R identified by Glimmer3; putative; hypothetical protein complement(2103172..2103732) Aggregatibacter actinomycetemcomitans D11S-1 8537921 YP_003256772.1 CDS D11S_2202 NC_013416.1 2103751 2104011 R identified by Glimmer3; putative; hypothetical protein complement(2103751..2104011) Aggregatibacter actinomycetemcomitans D11S-1 8537922 YP_003256773.1 CDS D11S_2203 NC_013416.1 2104015 2104560 R identified by Glimmer3; putative; hypothetical protein complement(2104015..2104560) Aggregatibacter actinomycetemcomitans D11S-1 8537923 YP_003256774.1 CDS D11S_2204 NC_013416.1 2104557 2104742 R identified by Glimmer3; putative; hypothetical protein complement(2104557..2104742) Aggregatibacter actinomycetemcomitans D11S-1 8537924 YP_003256775.1 CDS D11S_2205 NC_013416.1 2104739 2104906 R identified by Glimmer3; putative; hypothetical protein complement(2104739..2104906) Aggregatibacter actinomycetemcomitans D11S-1 8537925 YP_003256776.1 CDS D11S_2206 NC_013416.1 2105050 2105259 R identified by Glimmer3; putative; hypothetical protein complement(2105050..2105259) Aggregatibacter actinomycetemcomitans D11S-1 8537926 YP_003256777.1 CDS D11S_2207 NC_013416.1 2105262 2105465 R identified by Glimmer3; putative; hypothetical protein complement(2105262..2105465) Aggregatibacter actinomycetemcomitans D11S-1 8537927 YP_003264481.1 CDS D11S_2274 NC_013438.1 21 437 D identified by Glimmer3; putative; hypothetical protein 21..437 Aggregatibacter actinomycetemcomitans D11S-1 8537998 YP_003264482.1 CDS D11S_2275 NC_013438.1 431 568 D identified by Glimmer3; putative; hypothetical protein 431..568 Aggregatibacter actinomycetemcomitans D11S-1 8537956 YP_003264483.1 CDS D11S_2276 NC_013438.1 652 819 D identified by Glimmer3; putative; hypothetical protein 652..819 Aggregatibacter actinomycetemcomitans D11S-1 8537957 YP_003264484.1 CDS D11S_2277 NC_013438.1 1029 1154 R identified by Glimmer3; putative; hypothetical protein complement(1029..1154) Aggregatibacter actinomycetemcomitans D11S-1 8537958 YP_003264485.1 CDS D11S_2278 NC_013438.1 1554 2531 D identified by Glimmer3; putative; replication initiator protein 1554..2531 Aggregatibacter actinomycetemcomitans D11S-1 8537959 YP_003264486.1 CDS D11S_2279 NC_013438.1 2714 2902 D identified by Glimmer3; putative; hypothetical protein 2714..2902 Aggregatibacter actinomycetemcomitans D11S-1 8537960 YP_003264487.1 CDS D11S_2280 NC_013438.1 2902 3564 D identified by Glimmer3; putative; VirB1 2902..3564 Aggregatibacter actinomycetemcomitans D11S-1 8537961 YP_003264488.1 CDS D11S_2281 NC_013438.1 3577 3909 D identified by Glimmer3; putative; hypothetical protein 3577..3909 Aggregatibacter actinomycetemcomitans D11S-1 8537962 YP_003264489.1 CDS D11S_2282 NC_013438.1 4049 6832 D identified by Glimmer3; putative; ATPase 4049..6832 Aggregatibacter actinomycetemcomitans D11S-1 8537963 YP_003264490.1 CDS D11S_2283 NC_013438.1 6918 7649 D identified by Glimmer3; putative; Cmgb5 6918..7649 Aggregatibacter actinomycetemcomitans D11S-1 8537964 YP_003264491.1 CDS D11S_2284 NC_013438.1 7659 7850 D identified by Glimmer3; putative; hypothetical protein 7659..7850 Aggregatibacter actinomycetemcomitans D11S-1 8537965 YP_003264492.1 CDS D11S_2285 NC_013438.1 7869 8795 D identified by Glimmer3; putative; TriE protein 7869..8795 Aggregatibacter actinomycetemcomitans D11S-1 8537966 YP_003264493.1 CDS D11S_2286 NC_013438.1 8808 8987 D identified by Glimmer3; putative; hypothetical protein 8808..8987 Aggregatibacter actinomycetemcomitans D11S-1 8537967 YP_003264494.1 CDS D11S_2287 NC_013438.1 8991 9698 D identified by Glimmer3; putative; CmgB8 8991..9698 Aggregatibacter actinomycetemcomitans D11S-1 8537968 YP_003264495.1 CDS D11S_2288 NC_013438.1 9710 10597 D identified by Glimmer3; putative; Cmgb9 9710..10597 Aggregatibacter actinomycetemcomitans D11S-1 8537969 YP_003264496.1 CDS D11S_2289 NC_013438.1 10608 11792 D identified by Glimmer3; putative; conjugal transfer protein TrbI/VirB10 10608..11792 Aggregatibacter actinomycetemcomitans D11S-1 8537970 YP_003264497.1 CDS D11S_2290 NC_013438.1 11857 12891 D identified by Glimmer3; putative; ATPase 11857..12891 Aggregatibacter actinomycetemcomitans D11S-1 8537971 YP_003264498.1 CDS D11S_2291 NC_013438.1 12888 13286 D identified by Glimmer3; putative; hypothetical protein 12888..13286 Aggregatibacter actinomycetemcomitans D11S-1 8537972 YP_003264499.1 CDS D11S_2292 NC_013438.1 13333 13713 D identified by Glimmer3; putative; hypothetical protein 13333..13713 Aggregatibacter actinomycetemcomitans D11S-1 8537973 YP_003264500.1 CDS D11S_2293 NC_013438.1 13706 15607 D identified by Glimmer3; putative; conjugal transfer protein TraG/VirD4 13706..15607 Aggregatibacter actinomycetemcomitans D11S-1 8537974 YP_003264501.1 CDS D11S_2294 NC_013438.1 15620 16036 D identified by Glimmer3; putative; hypothetical protein 15620..16036 Aggregatibacter actinomycetemcomitans D11S-1 8537975 YP_003264502.1 CDS D11S_2295 NC_013438.1 16048 16371 D identified by Glimmer3; putative; TraR protein 16048..16371 Aggregatibacter actinomycetemcomitans D11S-1 8537976 YP_003264503.1 CDS D11S_2296 NC_013438.1 16380 16949 D identified by Glimmer3; putative; TrbM mating pair formation protein-like protein 16380..16949 Aggregatibacter actinomycetemcomitans D11S-1 8537977 YP_003264504.1 CDS D11S_2297 NC_013438.1 17274 17417 D identified by Glimmer3; putative; hypothetical protein 17274..17417 Aggregatibacter actinomycetemcomitans D11S-1 8537978 YP_003264505.1 CDS D11S_2298 NC_013438.1 17731 17991 D identified by Glimmer3; putative; hypothetical protein 17731..17991 Aggregatibacter actinomycetemcomitans D11S-1 8537979 YP_003264506.1 CDS D11S_2299 NC_013438.1 18006 18578 D identified by Glimmer3; putative; resolvase/integrase-like protein 18006..18578 Aggregatibacter actinomycetemcomitans D11S-1 8537980 YP_003264507.1 CDS D11S_2300 NC_013438.1 18688 18927 D identified by Glimmer3; putative; hypothetical protein 18688..18927 Aggregatibacter actinomycetemcomitans D11S-1 8537981 YP_003264508.1 CDS D11S_2301 NC_013438.1 18937 21219 D identified by Glimmer3; putative; TraE-like protein 18937..21219 Aggregatibacter actinomycetemcomitans D11S-1 8537982 YP_003264509.1 CDS D11S_2302 NC_013438.1 21239 21550 D identified by Glimmer3; putative; hypothetical protein 21239..21550 Aggregatibacter actinomycetemcomitans D11S-1 8537983 YP_003264510.1 CDS D11S_2303 NC_013438.1 21551 21748 D identified by Glimmer3; putative; hypothetical protein 21551..21748 Aggregatibacter actinomycetemcomitans D11S-1 8537984 YP_003264511.1 CDS D11S_2304 NC_013438.1 21778 22182 D identified by Glimmer3; putative; single-strand binding protein 21778..22182 Aggregatibacter actinomycetemcomitans D11S-1 8537985 YP_003264512.1 CDS D11S_2305 NC_013438.1 22229 22465 R identified by Glimmer3; putative; hypothetical protein complement(22229..22465) Aggregatibacter actinomycetemcomitans D11S-1 8537986 YP_003264513.1 CDS D11S_2306 NC_013438.1 22742 22897 D identified by Glimmer3; putative; hypothetical protein 22742..22897 Aggregatibacter actinomycetemcomitans D11S-1 8537987 YP_003264514.1 CDS D11S_2307 NC_013438.1 22906 23523 D identified by Glimmer3; putative; cobyrinic acid a,c-diamide synthase 22906..23523 Aggregatibacter actinomycetemcomitans D11S-1 8537988 YP_003264515.1 CDS D11S_2308 NC_013438.1 23565 23738 D identified by Glimmer3; putative; hypothetical protein 23565..23738 Aggregatibacter actinomycetemcomitans D11S-1 8537989 YP_003264516.1 CDS D11S_2309 NC_013438.1 23832 23957 D identified by Glimmer3; putative; hypothetical protein 23832..23957 Aggregatibacter actinomycetemcomitans D11S-1 8537990 YP_003264517.1 CDS D11S_2310 NC_013438.1 23959 25239 R identified by Glimmer3; putative; nickase complement(23959..25239) Aggregatibacter actinomycetemcomitans D11S-1 8537991 YP_003264518.1 CDS D11S_2311 NC_013438.1 25246 25746 R identified by Glimmer3; putative; hypothetical protein complement(25246..25746) Aggregatibacter actinomycetemcomitans D11S-1 8537992 YP_003264519.1 CDS D11S_2312 NC_013438.1 25917 26159 D identified by Glimmer3; putative; hypothetical protein 25917..26159 Aggregatibacter actinomycetemcomitans D11S-1 8537993 YP_003264520.1 CDS D11S_2313 NC_013438.1 26170 27489 D identified by Glimmer3; putative; hypothetical protein 26170..27489 Aggregatibacter actinomycetemcomitans D11S-1 8537994 YP_003264521.1 CDS D11S_2314 NC_013438.1 27514 28977 D identified by Glimmer3; putative; hypothetical protein 27514..28977 Aggregatibacter actinomycetemcomitans D11S-1 8537995 YP_003264522.1 CDS D11S_2315 NC_013438.1 29041 30354 D identified by Glimmer3; putative; hypothetical protein 29041..30354 Aggregatibacter actinomycetemcomitans D11S-1 8537996 YP_003264523.1 CDS D11S_2316 NC_013438.1 30474 30926 D identified by Glimmer3; putative; hypothetical protein 30474..30926 Aggregatibacter actinomycetemcomitans D11S-1 8537997 YP_003344781.1 CDS D11S_2208 NC_013597.1 248 565 R identified by Glimmer3; putative; hypothetical protein complement(248..565) Aggregatibacter phage S1249 8672843 YP_003344782.1 CDS D11S_2209 NC_013597.1 534 662 R identified by Glimmer3; putative; hypothetical protein complement(534..662) Aggregatibacter phage S1249 8672778 YP_003344783.1 CDS D11S_2210 NC_013597.1 709 1080 R identified by Glimmer3; putative; putative tail fiber assembly protein complement(709..1080) Aggregatibacter phage S1249 8672779 YP_003344784.1 CDS D11S_2211 NC_013597.1 1080 2564 R identified by Glimmer3; putative; putative tail fiber protein complement(1080..2564) Aggregatibacter phage S1249 8672780 YP_003344785.1 CDS D11S_2212 NC_013597.1 2575 3150 R identified by Glimmer3; putative; hypothetical protein complement(2575..3150) Aggregatibacter phage S1249 8672781 YP_003344786.1 CDS D11S_2213 NC_013597.1 3150 4292 R identified by Glimmer3; putative; hypothetical protein complement(3150..4292) Aggregatibacter phage S1249 8672782 YP_003344787.1 CDS D11S_2214 NC_013597.1 4323 4682 R identified by Glimmer3; putative; hypothetical protein complement(4323..4682) Aggregatibacter phage S1249 8672783 YP_003344788.1 CDS D11S_2215 NC_013597.1 4679 5323 R identified by Glimmer3; putative; putative baseplate protein complement(4679..5323) Aggregatibacter phage S1249 8672784 YP_003344789.1 CDS D11S_2216 NC_013597.1 5320 6174 R identified by Glimmer3; putative; hypothetical protein complement(5320..6174) Aggregatibacter phage S1249 8672785 YP_003344790.1 CDS D11S_2217 NC_013597.1 6190 6369 R identified by Glimmer3; putative; hypothetical protein complement(6190..6369) Aggregatibacter phage S1249 8672786 YP_003344791.1 CDS D11S_2218 NC_013597.1 6462 6776 R identified by Glimmer3; putative; hypothetical protein complement(6462..6776) Aggregatibacter phage S1249 8672787 YP_003344792.1 CDS D11S_2219 NC_013597.1 6787 7554 R identified by Glimmer3; putative; hypothetical protein complement(6787..7554) Aggregatibacter phage S1249 8672788 YP_003344793.1 CDS D11S_2220 NC_013597.1 7558 9642 R identified by Glimmer3; putative; putative tail length tape measure protein complement(7558..9642) Aggregatibacter phage S1249 8672789 YP_003344794.1 CDS D11S_2221 NC_013597.1 9793 10212 R identified by Glimmer3; putative; hypothetical protein complement(9793..10212) Aggregatibacter phage S1249 8672790 YP_003344795.1 CDS D11S_2222 NC_013597.1 10212 10643 R identified by Glimmer3; putative; hypothetical protein complement(10212..10643) Aggregatibacter phage S1249 8672791 YP_003344796.1 CDS D11S_2223 NC_013597.1 10693 12201 R identified by Glimmer3; putative; hypothetical protein complement(10693..12201) Aggregatibacter phage S1249 8672792 YP_003344797.1 CDS D11S_2224 NC_013597.1 12206 12847 R identified by Glimmer3; putative; hypothetical protein complement(12206..12847) Aggregatibacter phage S1249 8672793 YP_003344798.1 CDS D11S_2225 NC_013597.1 12633 13004 R identified by Glimmer3; putative; hypothetical protein complement(12633..13004) Aggregatibacter phage S1249 8672794 YP_003344799.1 CDS D11S_2226 NC_013597.1 13001 13447 R identified by Glimmer3; putative; hypothetical protein complement(13001..13447) Aggregatibacter phage S1249 8672795 YP_003344800.1 CDS D11S_2227 NC_013597.1 13448 13807 R identified by Glimmer3; putative; hypothetical protein complement(13448..13807) Aggregatibacter phage S1249 8672796 YP_003344801.1 CDS D11S_2228 NC_013597.1 13818 14732 R identified by Glimmer3; putative; hypothetical protein complement(13818..14732) Aggregatibacter phage S1249 8672797 YP_003344802.1 CDS D11S_2229 NC_013597.1 14744 15193 R identified by Glimmer3; putative; hypothetical protein complement(14744..15193) Aggregatibacter phage S1249 8672798 YP_003344803.1 CDS D11S_2230 NC_013597.1 15207 16319 R identified by Glimmer3; putative; hypothetical protein complement(15207..16319) Aggregatibacter phage S1249 8672799 YP_003344804.1 CDS D11S_2231 NC_013597.1 16379 16801 R identified by Glimmer3; putative; metal dependent phosphohydrolase, HD region complement(16379..16801) Aggregatibacter phage S1249 8672800 YP_003344805.1 CDS D11S_2232 NC_013597.1 16804 17022 R identified by Glimmer3; putative; hypothetical protein complement(16804..17022) Aggregatibacter phage S1249 8672801 YP_003344806.1 CDS D11S_2233 NC_013597.1 17019 19292 R identified by Glimmer3; putative; putative minor head protein complement(17019..19292) Aggregatibacter phage S1249 8672802 YP_003344807.1 CDS D11S_2234 NC_013597.1 19321 20655 R identified by Glimmer3; putative; phage-related protein HI1409 complement(19321..20655) Aggregatibacter phage S1249 8672803 YP_003344808.1 CDS D11S_2235 NC_013597.1 20657 22039 R identified by Glimmer3; putative; putative terminase large subunit TerL complement(20657..22039) Aggregatibacter phage S1249 8672804 YP_003344809.1 CDS D11S_2236 NC_013597.1 22065 22625 R identified by Glimmer3; putative; putative terminase small subunit TerS complement(22065..22625) Aggregatibacter phage S1249 8672805 YP_003344810.1 CDS D11S_2237 NC_013597.1 22782 23048 R identified by Glimmer3; putative; hypothetical protein complement(22782..23048) Aggregatibacter phage S1249 8672806 YP_003344811.1 CDS D11S_2238 NC_013597.1 23052 23264 R identified by Glimmer3; putative; putative lytic protein Rz1 complement(23052..23264) Aggregatibacter phage S1249 8672807 YP_003344812.1 CDS D11S_2239 NC_013597.1 23245 23577 R identified by Glimmer3; putative; putative lytic protein Rz complement(23245..23577) Aggregatibacter phage S1249 8672808 YP_003344813.1 CDS D11S_2240 NC_013597.1 23580 24161 R identified by Glimmer3; putative; putative Lys protein complement(23580..24161) Aggregatibacter phage S1249 8672809 YP_003344814.1 CDS D11S_2241 NC_013597.1 24230 24541 R identified by Glimmer3; putative; hypothetical protein complement(24230..24541) Aggregatibacter phage S1249 8672810 YP_003344815.1 CDS D11S_2242 NC_013597.1 24504 24872 R identified by Glimmer3; putative; hypothetical protein complement(24504..24872) Aggregatibacter phage S1249 8672811 YP_003344816.1 CDS D11S_2243 NC_013597.1 24869 25315 R identified by Glimmer3; putative; hypothetical protein complement(24869..25315) Aggregatibacter phage S1249 8672812 YP_003344817.1 CDS D11S_2244 NC_013597.1 25514 26383 R identified by Glimmer3; putative; putative antirepressor protein Ant complement(25514..26383) Aggregatibacter phage S1249 8672813 YP_003344818.1 CDS D11S_2245 NC_013597.1 26667 27038 R identified by Glimmer3; putative; putative anti-termination protein Q complement(26667..27038) Aggregatibacter phage S1249 8672814 YP_003344819.1 CDS D11S_2246 NC_013597.1 27038 27598 R identified by Glimmer3; putative; NinG recombination protein complement(27038..27598) Aggregatibacter phage S1249 8672815 YP_003344820.1 CDS D11S_2247 NC_013597.1 27598 27801 R identified by Glimmer3; putative; hypothetical protein complement(27598..27801) Aggregatibacter phage S1249 8672816 YP_003344821.1 CDS D11S_2248 NC_013597.1 27788 27967 R identified by Glimmer3; putative; hypothetical protein complement(27788..27967) Aggregatibacter phage S1249 8672817 YP_003344822.1 CDS D11S_2249 NC_013597.1 27967 28194 R identified by Glimmer3; putative; hypothetical protein complement(27967..28194) Aggregatibacter phage S1249 8672818 YP_003344823.1 CDS D11S_2250 NC_013597.1 28191 28688 R identified by Glimmer3; putative; putative recombination protein NinB complement(28191..28688) Aggregatibacter phage S1249 8672819 YP_003344824.1 CDS D11S_2251 NC_013597.1 28695 29195 R identified by Glimmer3; putative; DNA adenine methylase complement(28695..29195) Aggregatibacter phage S1249 8672820 YP_003344825.1 CDS D11S_2252 NC_013597.1 29192 29866 R identified by Glimmer3; putative; possible bacteriophage replication protein P complement(29192..29866) Aggregatibacter phage S1249 8672821 YP_003344826.1 CDS D11S_2253 NC_013597.1 29863 30585 R identified by Glimmer3; putative; replication protein complement(29863..30585) Aggregatibacter phage S1249 8672822 YP_003344827.1 CDS D11S_2254 NC_013597.1 30582 31289 R COG3646; identified by Glimmer3; putative; uncharacterized phage-encoded protein complement(30582..31289) Aggregatibacter phage S1249 8672823 YP_003344828.1 CDS D11S_2255 NC_013597.1 31342 31458 R identified by Glimmer3; putative; hypothetical protein complement(31342..31458) Aggregatibacter phage S1249 8672824 YP_003344829.1 CDS D11S_2256 NC_013597.1 31538 31777 R identified by Glimmer3; putative; phage protein complement(31538..31777) Aggregatibacter phage S1249 8672825 YP_003344830.1 CDS D11S_2257 NC_013597.1 31908 32567 D identified by Glimmer3; putative; cI repressor protein 31908..32567 Aggregatibacter phage S1249 8672826 YP_003344831.1 CDS D11S_2258 NC_013597.1 32592 34289 D identified by Glimmer3; putative; hypothetical protein 32592..34289 Aggregatibacter phage S1249 8672827 YP_003344832.1 CDS D11S_2259 NC_013597.1 34707 34865 D identified by Glimmer3; putative; hypothetical protein 34707..34865 Aggregatibacter phage S1249 8672828 YP_003344833.1 CDS D11S_2260 NC_013597.1 35586 35789 D identified by Glimmer3; putative; hypothetical protein 35586..35789 Aggregatibacter phage S1249 8672829 YP_003344834.1 CDS D11S_2261 NC_013597.1 36265 36705 D identified by Glimmer3; putative; phage-associated protein 36265..36705 Aggregatibacter phage S1249 8672830 YP_003344835.1 CDS D11S_2262 NC_013597.1 36692 37036 D identified by Glimmer3; putative; hypothetical protein 36692..37036 Aggregatibacter phage S1249 8672831 YP_003344836.1 CDS D11S_2263 NC_013597.1 37748 38401 D identified by Glimmer3; putative; possible bacteriophage antirepressor 37748..38401 Aggregatibacter phage S1249 8672832 YP_003344837.1 CDS D11S_2264 NC_013597.1 38488 38763 D identified by Glimmer3; putative; hypothetical protein 38488..38763 Aggregatibacter phage S1249 8672833 YP_003344838.1 CDS D11S_2265 NC_013597.1 38768 39007 D identified by Glimmer3; putative; hypothetical protein 38768..39007 Aggregatibacter phage S1249 8672834 YP_003344839.1 CDS D11S_2266 NC_013597.1 39010 39309 D identified by Glimmer3; putative; hypothetical protein 39010..39309 Aggregatibacter phage S1249 8672835 YP_003344840.1 CDS D11S_2267 NC_013597.1 39321 40214 D identified by Glimmer3; putative; hypothetical protein 39321..40214 Aggregatibacter phage S1249 8672836 YP_003344841.1 CDS D11S_2268 NC_013597.1 40211 40834 D identified by Glimmer3; putative; hypothetical protein 40211..40834 Aggregatibacter phage S1249 8672837 YP_003344842.1 CDS D11S_2269 NC_013597.1 40878 41009 D identified by Glimmer3; putative; hypothetical protein 40878..41009 Aggregatibacter phage S1249 8672838 YP_003344843.1 CDS D11S_2270 NC_013597.1 41042 41527 D identified by Glimmer3; putative; hypothetical protein 41042..41527 Aggregatibacter phage S1249 8672839 YP_003344844.1 CDS D11S_2271 NC_013597.1 41594 42250 D identified by Glimmer3; putative; hypothetical protein 41594..42250 Aggregatibacter phage S1249 8672840 YP_003344845.1 CDS D11S_2272 NC_013597.1 42266 42619 D identified by Glimmer3; putative; hypothetical protein 42266..42619 Aggregatibacter phage S1249 8672841 YP_003344846.1 CDS D11S_2273 NC_013597.1 42856 43902 D identified by Glimmer3; putative; putative integrase 42856..43902 Aggregatibacter phage S1249 8672842 YP_003966090.1 CDS D11S_2317 NC_014629.1 260 586 D identified by Glimmer3; putative; hypothetical protein 260..586 Aggregatibacter actinomycetemcomitans D11S-1 9970327 YP_003966091.1 CDS D11S_2318 NC_014629.1 583 870 R identified by Glimmer3; putative; hypothetical protein complement(583..870) Aggregatibacter actinomycetemcomitans D11S-1 9970287 YP_003966092.1 CDS D11S_2319 NC_014629.1 897 1544 R identified by Glimmer3; putative; lytic transglycosylase catalytic complement(897..1544) Aggregatibacter actinomycetemcomitans D11S-1 9970288 YP_003966093.1 CDS D11S_2320 NC_014629.1 1560 1997 R identified by Glimmer3; putative; single-strand binding protein complement(1560..1997) Aggregatibacter actinomycetemcomitans D11S-1 9970289 YP_003966094.1 CDS D11S_2321 NC_014629.1 2176 2754 D identified by Glimmer3; putative; site-specific recombinase 2176..2754 Aggregatibacter actinomycetemcomitans D11S-1 9970290 YP_003966095.1 CDS D11S_2322 NC_014629.1 2758 2898 R identified by Glimmer3; putative; nickase complement(2758..2898) Aggregatibacter actinomycetemcomitans D11S-1 9970291 YP_003966096.1 CDS D11S_2323 NC_014629.1 2966 3922 R identified by Glimmer3; putative; nickase complement(2966..3922) Aggregatibacter actinomycetemcomitans D11S-1 9970292 YP_003966097.1 CDS D11S_2324 NC_014629.1 3892 4434 R identified by Glimmer3; putative; hypothetical protein complement(3892..4434) Aggregatibacter actinomycetemcomitans D11S-1 9970293 YP_003966098.1 CDS D11S_2325 NC_014629.1 4622 4741 D identified by Glimmer3; putative; hypothetical protein 4622..4741 Aggregatibacter actinomycetemcomitans D11S-1 9970294 YP_003966099.1 CDS D11S_2326 NC_014629.1 5049 5333 D identified by Glimmer3; putative; hypothetical protein 5049..5333 Aggregatibacter actinomycetemcomitans D11S-1 9970295 YP_003966100.1 CDS D11S_2327 NC_014629.1 5614 6003 D identified by Glimmer3; putative; hypothetical protein 5614..6003 Aggregatibacter actinomycetemcomitans D11S-1 9970296 YP_003966101.1 CDS D11S_2328 NC_014629.1 6029 6418 D identified by Glimmer3; putative; hypothetical protein 6029..6418 Aggregatibacter actinomycetemcomitans D11S-1 9970297 YP_003966102.1 CDS D11S_2329 NC_014629.1 6375 7085 D identified by Glimmer3; putative; hypothetical protein 6375..7085 Aggregatibacter actinomycetemcomitans D11S-1 9970298 YP_003966104.1 CDS D11S_2331 NC_014629.1 7063 7680 D identified by Glimmer3; putative; hypothetical protein 7063..7680 Aggregatibacter actinomycetemcomitans D11S-1 9970299 YP_003966105.1 CDS D11S_2332 NC_014629.1 7670 7867 D identified by Glimmer3; putative; hypothetical protein 7670..7867 Aggregatibacter actinomycetemcomitans D11S-1 9970300 YP_003966106.1 CDS D11S_2333 NC_014629.1 8146 8334 D identified by Glimmer3; putative; hypothetical protein 8146..8334 Aggregatibacter actinomycetemcomitans D11S-1 9970301 YP_003966107.1 CDS D11S_2334 NC_014629.1 8327 8443 D identified by Glimmer3; putative; hypothetical protein 8327..8443 Aggregatibacter actinomycetemcomitans D11S-1 9970302 YP_003966108.1 CDS D11S_2335 NC_014629.1 8404 8712 R identified by Glimmer3; putative; hypothetical protein complement(8404..8712) Aggregatibacter actinomycetemcomitans D11S-1 9970303 YP_003966109.1 CDS D11S_2336 NC_014629.1 9019 10026 R identified by Glimmer3; putative; replication protein complement(9019..10026) Aggregatibacter actinomycetemcomitans D11S-1 9970304 YP_003966110.1 CDS D11S_2337 NC_014629.1 10038 10166 R identified by Glimmer3; putative; hypothetical protein complement(10038..10166) Aggregatibacter actinomycetemcomitans D11S-1 9970305 YP_003966111.1 CDS D11S_2338 NC_014629.1 10409 10612 D identified by Glimmer3; putative; hypothetical protein 10409..10612 Aggregatibacter actinomycetemcomitans D11S-1 9970306 YP_003966112.1 CDS D11S_2339 NC_014629.1 10736 10972 R identified by Glimmer3; putative; hypothetical protein complement(10736..10972) Aggregatibacter actinomycetemcomitans D11S-1 9970307 YP_003966113.1 CDS D11S_2340 NC_014629.1 11082 11357 R identified by Glimmer3; putative; filamentation induced by cAMP protein Fic-like protein complement(11082..11357) Aggregatibacter actinomycetemcomitans D11S-1 9970308 YP_003966114.1 CDS D11S_2341 NC_014629.1 11410 11649 R identified by Glimmer3; putative; hypothetical protein complement(11410..11649) Aggregatibacter actinomycetemcomitans D11S-1 9970309 YP_003966115.1 CDS D11S_2342 NC_014629.1 11642 12283 R identified by Glimmer3; putative; partition protein complement(11642..12283) Aggregatibacter actinomycetemcomitans D11S-1 9970310 YP_003966116.1 CDS D11S_2343 NC_014629.1 12306 12437 R identified by Glimmer3; putative; hypothetical protein complement(12306..12437) Aggregatibacter actinomycetemcomitans D11S-1 9970311 YP_003966117.1 CDS D11S_2344 NC_014629.1 12434 12583 R identified by Glimmer3; putative; hypothetical protein complement(12434..12583) Aggregatibacter actinomycetemcomitans D11S-1 9970312 YP_003966118.1 CDS D11S_2345 NC_014629.1 12700 12867 D identified by Glimmer3; putative; hypothetical protein 12700..12867 Aggregatibacter actinomycetemcomitans D11S-1 9970313 YP_003966119.1 CDS D11S_2346 NC_014629.1 12864 13148 D identified by Glimmer3; putative; hypothetical protein 12864..13148 Aggregatibacter actinomycetemcomitans D11S-1 9970314 YP_003966120.1 CDS D11S_2347 NC_014629.1 13225 13557 R identified by Glimmer3; putative; YggA-like protein complement(13225..13557) Aggregatibacter actinomycetemcomitans D11S-1 9970315 YP_003966121.1 CDS D11S_2348 NC_014629.1 13541 13978 R identified by Glimmer3; putative; lipoprotein complement(13541..13978) Aggregatibacter actinomycetemcomitans D11S-1 9970316 YP_003966122.1 CDS D11S_2349 NC_014629.1 14024 15763 R identified by Glimmer3; putative; ATPase complement(14024..15763) Aggregatibacter actinomycetemcomitans D11S-1 9970317 YP_003966123.1 CDS D11S_2350 NC_014629.1 15763 16794 R identified by Glimmer3; putative; ATPase complement(15763..16794) Aggregatibacter actinomycetemcomitans D11S-1 9970318 YP_003966124.1 CDS D11S_2351 NC_014629.1 16807 17916 R identified by Glimmer3; putative; conjugal transfer protein TrbI/VirB10 complement(16807..17916) Aggregatibacter actinomycetemcomitans D11S-1 9970319 YP_003966125.1 CDS D11S_2352 NC_014629.1 17926 18783 R identified by Glimmer3; putative; P-type conjugative transfer protein VirB9 complement(17926..18783) Aggregatibacter actinomycetemcomitans D11S-1 9970320 YP_003966126.1 CDS D11S_2353 NC_014629.1 18785 19474 R identified by Glimmer3; putative; CmgB8 complement(18785..19474) Aggregatibacter actinomycetemcomitans D11S-1 9970321 YP_003966127.1 CDS D11S_2354 NC_014629.1 19471 19617 R identified by Glimmer3; putative; lipoprotein complement(19471..19617) Aggregatibacter actinomycetemcomitans D11S-1 9970322 YP_003966128.1 CDS D11S_2355 NC_014629.1 19687 20688 R identified by Glimmer3; putative; TriE protein complement(19687..20688) Aggregatibacter actinomycetemcomitans D11S-1 9970323 YP_003966129.1 CDS D11S_2356 NC_014629.1 20700 20924 R identified by Glimmer3; putative; lipoprotein complement(20700..20924) Aggregatibacter actinomycetemcomitans D11S-1 9970324 YP_003966130.1 CDS D11S_2357 NC_014629.1 20946 21674 R identified by Glimmer3; putative; transport associated protein 4 complement(20946..21674) Aggregatibacter actinomycetemcomitans D11S-1 9970325 YP_003966131.1 CDS D11S_2358 NC_014629.1 21685 23856 R identified by Glimmer3; putative; hypothetical protein complement(21685..23856) Aggregatibacter actinomycetemcomitans D11S-1 9970326 D11S_0108 tRNA D11S_0108 NC_013416.1 93115 93190 R tRNA-Ala complement(93115..93190) Aggregatibacter actinomycetemcomitans D11S-1 8535827 D11S_0109 tRNA D11S_0109 NC_013416.1 93240 93316 R tRNA-Ile complement(93240..93316) Aggregatibacter actinomycetemcomitans D11S-1 8535828 D11S_0189 tRNA D11S_0189 NC_013416.1 170675 170751 R tRNA-Arg complement(170675..170751) Aggregatibacter actinomycetemcomitans D11S-1 8535908 D11S_0190 tRNA D11S_0190 NC_013416.1 170806 170882 R tRNA-Arg complement(170806..170882) Aggregatibacter actinomycetemcomitans D11S-1 8535909 D11S_0191 tRNA D11S_0191 NC_013416.1 170900 170993 R tRNA-Ser complement(170900..170993) Aggregatibacter actinomycetemcomitans D11S-1 8535910 D11S_0264 tRNA D11S_0264 NC_013416.1 242155 242230 R tRNA-Ala complement(242155..242230) Aggregatibacter actinomycetemcomitans D11S-1 8535983 D11S_0265 tRNA D11S_0265 NC_013416.1 242280 242356 R tRNA-Ile complement(242280..242356) Aggregatibacter actinomycetemcomitans D11S-1 8535984 D11S_0348 tRNA D11S_0348 NC_013416.1 322540 322630 D tRNA-Sec 322540..322630 Aggregatibacter actinomycetemcomitans D11S-1 8536067 D11S_0584 tRNA D11S_0584 NC_013416.1 526224 526299 D tRNA-Glu 526224..526299 Aggregatibacter actinomycetemcomitans D11S-1 8536303 D11S_0602 tRNA D11S_0602 NC_013416.1 541004 541080 D tRNA-Pro 541004..541080 Aggregatibacter actinomycetemcomitans D11S-1 8536321 D11S_0603 tRNA D11S_0603 NC_013416.1 541114 541190 D tRNA-Arg 541114..541190 Aggregatibacter actinomycetemcomitans D11S-1 8536322 D11S_0628 tRNA D11S_0628 NC_013416.1 562888 562963 D tRNA-Phe 562888..562963 Aggregatibacter actinomycetemcomitans D11S-1 8536347 D11S_0629 tRNA D11S_0629 NC_013416.1 562968 563043 D tRNA-Asn 562968..563043 Aggregatibacter actinomycetemcomitans D11S-1 8536348 D11S_0718 tRNA D11S_0718 NC_013416.1 646208 646283 R tRNA-Thr complement(646208..646283) Aggregatibacter actinomycetemcomitans D11S-1 8536437 D11S_0719 tRNA D11S_0719 NC_013416.1 646287 646361 R tRNA-Gly complement(646287..646361) Aggregatibacter actinomycetemcomitans D11S-1 8536438 D11S_0720 tRNA D11S_0720 NC_013416.1 646402 646486 R tRNA-Tyr complement(646402..646486) Aggregatibacter actinomycetemcomitans D11S-1 8536439 D11S_0721 tRNA D11S_0721 NC_013416.1 646517 646592 R tRNA-Thr complement(646517..646592) Aggregatibacter actinomycetemcomitans D11S-1 8536440 D11S_0752 tRNA D11S_0752 NC_013416.1 675483 675559 R tRNA-Met complement(675483..675559) Aggregatibacter actinomycetemcomitans D11S-1 8536471 D11S_0825 tRNA D11S_0825 NC_013416.1 747623 747708 D tRNA-Leu 747623..747708 Aggregatibacter actinomycetemcomitans D11S-1 8536544 D11S_0854 tRNA D11S_0854 NC_013416.1 777366 777452 D tRNA-Leu 777366..777452 Aggregatibacter actinomycetemcomitans D11S-1 8536573 D11S_0913 tRNA D11S_0913 NC_013416.1 834103 834178 R tRNA-Lys complement(834103..834178) Aggregatibacter actinomycetemcomitans D11S-1 8536632 D11S_0914 tRNA D11S_0914 NC_013416.1 834231 834317 R tRNA-Leu complement(834231..834317) Aggregatibacter actinomycetemcomitans D11S-1 8536633 D11S_0915 tRNA D11S_0915 NC_013416.1 834319 834394 R tRNA-Gly complement(834319..834394) Aggregatibacter actinomycetemcomitans D11S-1 8536634 D11S_0945 tRNA D11S_0945 NC_013416.1 863727 863802 D tRNA-Glu 863727..863802 Aggregatibacter actinomycetemcomitans D11S-1 8536664 D11S_0970 tRNA D11S_0970 NC_013416.1 889564 889639 R tRNA-Gly complement(889564..889639) Aggregatibacter actinomycetemcomitans D11S-1 8536689 D11S_1168 tRNA D11S_1168 NC_013416.1 1088512 1088588 D tRNA-Met 1088512..1088588 Aggregatibacter actinomycetemcomitans D11S-1 8536887 D11S_1169 tRNA D11S_1169 NC_013416.1 1088594 1088678 D tRNA-Leu 1088594..1088678 Aggregatibacter actinomycetemcomitans D11S-1 8536888 D11S_1170 tRNA D11S_1170 NC_013416.1 1088708 1088782 D tRNA-Gln 1088708..1088782 Aggregatibacter actinomycetemcomitans D11S-1 8536889 D11S_1171 tRNA D11S_1171 NC_013416.1 1088820 1088894 D tRNA-Gln 1088820..1088894 Aggregatibacter actinomycetemcomitans D11S-1 8536890 D11S_1198 tRNA D11S_1198 NC_013416.1 1111712 1111788 D tRNA-Met 1111712..1111788 Aggregatibacter actinomycetemcomitans D11S-1 8536917 D11S_1427 tRNA D11S_1427 NC_013416.1 1354816 1354892 R tRNA-Val complement(1354816..1354892) Aggregatibacter actinomycetemcomitans D11S-1 8537146 D11S_1452 tRNA D11S_1452 NC_013416.1 1381050 1381125 R tRNA-Ala complement(1381050..1381125) Aggregatibacter actinomycetemcomitans D11S-1 8537171 D11S_1453 tRNA D11S_1453 NC_013416.1 1381175 1381251 R tRNA-Ile complement(1381175..1381251) Aggregatibacter actinomycetemcomitans D11S-1 8537172 D11S_1521 tRNA D11S_1521 NC_013416.1 1445363 1445452 D tRNA-Ser 1445363..1445452 Aggregatibacter actinomycetemcomitans D11S-1 8537240 D11S_1539 tRNA D11S_1539 NC_013416.1 1463249 1463324 R tRNA-Trp complement(1463249..1463324) Aggregatibacter actinomycetemcomitans D11S-1 8537258 D11S_1540 tRNA D11S_1540 NC_013416.1 1463359 1463435 R tRNA-Asp complement(1463359..1463435) Aggregatibacter actinomycetemcomitans D11S-1 8537259 D11S_1545 tRNA D11S_1545 NC_013416.1 1467240 1467315 R tRNA-Glu complement(1467240..1467315) Aggregatibacter actinomycetemcomitans D11S-1 8537264 D11S_1547 tRNA D11S_1547 NC_013416.1 1469141 1469217 R tRNA-Pro complement(1469141..1469217) Aggregatibacter actinomycetemcomitans D11S-1 8537266 D11S_1548 tRNA D11S_1548 NC_013416.1 1469220 1469295 R tRNA-His complement(1469220..1469295) Aggregatibacter actinomycetemcomitans D11S-1 8537267 D11S_1549 tRNA D11S_1549 NC_013416.1 1469327 1469403 R tRNA-Arg complement(1469327..1469403) Aggregatibacter actinomycetemcomitans D11S-1 8537268 D11S_1590 tRNA D11S_1590 NC_013416.1 1519207 1519282 D tRNA-Asn 1519207..1519282 Aggregatibacter actinomycetemcomitans D11S-1 8537309 D11S_1663 tRNA D11S_1663 NC_013416.1 1593052 1593137 D tRNA-Leu 1593052..1593137 Aggregatibacter actinomycetemcomitans D11S-1 8537382 D11S_1796 tRNA D11S_1796 NC_013416.1 1730573 1730649 D tRNA-Asp 1730573..1730649 Aggregatibacter actinomycetemcomitans D11S-1 8537515 D11S_1797 tRNA D11S_1797 NC_013416.1 1730672 1730748 D tRNA-Asp 1730672..1730748 Aggregatibacter actinomycetemcomitans D11S-1 8537516 D11S_1833 tRNA D11S_1833 NC_013416.1 1772452 1772528 R tRNA-Lys complement(1772452..1772528) Aggregatibacter actinomycetemcomitans D11S-1 8537552 D11S_1834 tRNA D11S_1834 NC_013416.1 1772554 1772629 R tRNA-Lys complement(1772554..1772629) Aggregatibacter actinomycetemcomitans D11S-1 8537553 D11S_1835 tRNA D11S_1835 NC_013416.1 1772656 1772731 R tRNA-Lys complement(1772656..1772731) Aggregatibacter actinomycetemcomitans D11S-1 8537554 D11S_1894 tRNA D11S_1894 NC_013416.1 1826105 1826194 R tRNA-Ser complement(1826105..1826194) Aggregatibacter actinomycetemcomitans D11S-1 8537613 D11S_1901 tRNA D11S_1901 NC_013416.1 1833549 1833624 D tRNA-Gly 1833549..1833624 Aggregatibacter actinomycetemcomitans D11S-1 8537620 D11S_1902 tRNA D11S_1902 NC_013416.1 1833633 1833706 D tRNA-Cys 1833633..1833706 Aggregatibacter actinomycetemcomitans D11S-1 8537621 D11S_1913 tRNA D11S_1913 NC_013416.1 1842240 1842316 R tRNA-Met complement(1842240..1842316) Aggregatibacter actinomycetemcomitans D11S-1 8537632 D11S_2115 tRNA D11S_2115 NC_013416.1 2026714 2026789 D tRNA-Val 2026714..2026789 Aggregatibacter actinomycetemcomitans D11S-1 8537834 D11S_2116 tRNA D11S_2116 NC_013416.1 2026828 2026903 D tRNA-Val 2026828..2026903 Aggregatibacter actinomycetemcomitans D11S-1 8537835 D11S_2117 tRNA D11S_2117 NC_013416.1 2026931 2027006 D tRNA-Val 2026931..2027006 Aggregatibacter actinomycetemcomitans D11S-1 8537836 D11S_0105 rRNA D11S_0105 NC_013416.1 89411 89499 R 5S ribosomal RNA complement(89411..89499) Aggregatibacter actinomycetemcomitans D11S-1 8535824 D11S_0107 rRNA D11S_0107 NC_013416.1 89823 92834 R 23S ribosomal RNA complement(join(89823..91613,91658..92834)) Aggregatibacter actinomycetemcomitans D11S-1 8535826 D11S_0110 rRNA D11S_0110 NC_013416.1 93453 94937 R 16S ribosomal RNA complement(93453..94937) Aggregatibacter actinomycetemcomitans D11S-1 8535829 D11S_0261 rRNA D11S_0261 NC_013416.1 238446 238534 R 5S ribosomal RNA complement(238446..238534) Aggregatibacter actinomycetemcomitans D11S-1 8535980 D11S_0263 rRNA D11S_0263 NC_013416.1 238858 241874 R 23S ribosomal RNA complement(join(238858..240653,240698..241874)) Aggregatibacter actinomycetemcomitans D11S-1 8535982 D11S_0266 rRNA D11S_0266 NC_013416.1 242493 243977 R 16S ribosomal RNA complement(242493..243977) Aggregatibacter actinomycetemcomitans D11S-1 8535985 D11S_0583 rRNA D11S_0583 NC_013416.1 524590 526074 D 16S ribosomal RNA 524590..526074 Aggregatibacter actinomycetemcomitans D11S-1 8536302 D11S_0585 rRNA D11S_0585 NC_013416.1 526507 529523 D 23S ribosomal RNA join(526507..527682,527728..529523) Aggregatibacter actinomycetemcomitans D11S-1 8536304 D11S_0587 rRNA D11S_0587 NC_013416.1 529847 529935 D 5S ribosomal RNA 529847..529935 Aggregatibacter actinomycetemcomitans D11S-1 8536306 D11S_0944 rRNA D11S_0944 NC_013416.1 862093 863577 D 16S ribosomal RNA 862093..863577 Aggregatibacter actinomycetemcomitans D11S-1 8536663 D11S_0946 rRNA D11S_0946 NC_013416.1 864010 867026 D 23S ribosomal RNA join(864010..865185,865231..867026) Aggregatibacter actinomycetemcomitans D11S-1 8536665 D11S_0948 rRNA D11S_0948 NC_013416.1 867350 867438 D 5S ribosomal RNA 867350..867438 Aggregatibacter actinomycetemcomitans D11S-1 8536667 D11S_1449 rRNA D11S_1449 NC_013416.1 1377347 1377435 R 5S ribosomal RNA complement(1377347..1377435) Aggregatibacter actinomycetemcomitans D11S-1 8537168 D11S_1451 rRNA D11S_1451 NC_013416.1 1377753 1380769 R 23S ribosomal RNA complement(join(1377753..1379548,1379593..1380769)) Aggregatibacter actinomycetemcomitans D11S-1 8537170 D11S_1454 rRNA D11S_1454 NC_013416.1 1381388 1382872 R 16S ribosomal RNA complement(1381388..1382872) Aggregatibacter actinomycetemcomitans D11S-1 8537173 D11S_1541 rRNA D11S_1541 NC_013416.1 1463447 1463535 R 5S ribosomal RNA complement(1463447..1463535) Aggregatibacter actinomycetemcomitans D11S-1 8537260 D11S_1542 rRNA D11S_1542 NC_013416.1 1463613 1463701 R 5S ribosomal RNA complement(1463613..1463701) Aggregatibacter actinomycetemcomitans D11S-1 8537261 D11S_1544 rRNA D11S_1544 NC_013416.1 1464019 1467032 R 23S ribosomal RNA complement(join(1464019..1465811,1465856..1467032)) Aggregatibacter actinomycetemcomitans D11S-1 8537263 D11S_1546 rRNA D11S_1546 NC_013416.1 1467465 1468949 R 16S ribosomal RNA complement(1467465..1468949) Aggregatibacter actinomycetemcomitans D11S-1 8537265