-- dump date 20140618_185028 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 243159000001 SEQ_END SEQ_END NC_011761.1 2982397 2982397 DR NC_011761.1; contig end 2982397..2982397 Acidithiobacillus ferrooxidans ATCC 23270 YP_002424516.1 CDS dnaN NC_011761.1 86 1183 D identified by similarity to SP:P00583; match to protein family HMM PF00712; match to protein family HMM PF02767; match to protein family HMM PF02768; match to protein family HMM TIGR00663; DNA polymerase III subunit beta 86..1183 Acidithiobacillus ferrooxidans ATCC 23270 7135870 YP_002424517.1 CDS AFE_0002 NC_011761.1 1185 2237 D identified by match to protein family HMM PF02463; match to protein family HMM TIGR00611; DNA replication and repair protein RecF 1185..2237 Acidithiobacillus ferrooxidans ATCC 23270 7135748 YP_002424518.1 CDS gyrB NC_011761.1 2237 4639 D identified by similarity to SP:P06982; match to protein family HMM PF00204; match to protein family HMM PF00986; match to protein family HMM PF01751; match to protein family HMM PF02518; match to protein family HMM TIGR01059; DNA gyrase subunit B 2237..4639 Acidithiobacillus ferrooxidans ATCC 23270 7136631 YP_002424519.1 CDS AFE_0004 NC_011761.1 4784 8290 D identified by similarity to GB:AAO90130.1; hypothetical protein 4784..8290 Acidithiobacillus ferrooxidans ATCC 23270 7135378 YP_002424520.1 CDS AFE_0005 NC_011761.1 8385 8897 D identified by similarity to SP:P27755; match to protein family HMM PF05229; spore coat protein 8385..8897 Acidithiobacillus ferrooxidans ATCC 23270 7134922 YP_002424521.1 CDS AFE_0006 NC_011761.1 8911 9654 D identified by similarity to SP:P15319; pilus chaperone protein 8911..9654 Acidithiobacillus ferrooxidans ATCC 23270 7137108 YP_002424522.1 CDS AFE_0007 NC_011761.1 9620 12064 D identified by match to protein family HMM PF00577; outer membrane usher protein 9620..12064 Acidithiobacillus ferrooxidans ATCC 23270 7136858 YP_002424523.1 CDS AFE_0008 NC_011761.1 12061 12525 D identified by similarity to SP:P27755; match to protein family HMM PF05229; spore coat protein 12061..12525 Acidithiobacillus ferrooxidans ATCC 23270 7134319 YP_002424524.1 CDS AFE_0010 NC_011761.1 12684 13118 R identified by similarity to GB:AAP86126.1; hypothetical protein complement(12684..13118) Acidithiobacillus ferrooxidans ATCC 23270 7135031 YP_002424525.1 CDS minE NC_011761.1 13451 13702 R identified by similarity to SP:P18198; match to protein family HMM PF03776; match to protein family HMM TIGR01215; cell division topological specificity factor MinE complement(13451..13702) Acidithiobacillus ferrooxidans ATCC 23270 7135880 YP_002424526.1 CDS minD NC_011761.1 13704 14513 R identified by similarity to SP:P18197; match to protein family HMM PF01656; match to protein family HMM TIGR01968; septum site-determining protein MinD complement(13704..14513) Acidithiobacillus ferrooxidans ATCC 23270 7135695 YP_002424527.1 CDS minC NC_011761.1 14532 15215 R identified by similarity to SP:P18196; match to protein family HMM PF03775; match to protein family HMM TIGR01222; septum site-determining protein MinC complement(14532..15215) Acidithiobacillus ferrooxidans ATCC 23270 7134954 YP_002424528.1 CDS AFE_0014 NC_011761.1 15294 15620 R identified by similarity to SP:P08811; match to protein family HMM PF00037; ferredoxin complement(15294..15620) Acidithiobacillus ferrooxidans ATCC 23270 7135579 YP_002424529.1 CDS topA NC_011761.1 15617 18172 R identified by match to protein family HMM PF01131; match to protein family HMM PF01396; match to protein family HMM PF01751; match to protein family HMM TIGR01051; DNA topoisomerase I complement(15617..18172) Acidithiobacillus ferrooxidans ATCC 23270 7134408 YP_002424530.1 CDS AFE_0016 NC_011761.1 18176 18616 R smg family protein complement(18176..18616) Acidithiobacillus ferrooxidans ATCC 23270 7134483 YP_002424531.1 CDS AFE_0017 NC_011761.1 18626 19723 R identified by match to protein family HMM PF02481; match to protein family HMM TIGR00732; DNA processing protein DprA complement(18626..19723) Acidithiobacillus ferrooxidans ATCC 23270 7136230 YP_002424532.1 CDS AFE_0018 NC_011761.1 19720 20769 R identified by match to protein family HMM PF01476; LysM domain-containing protein complement(19720..20769) Acidithiobacillus ferrooxidans ATCC 23270 7135342 YP_002424533.1 CDS def-2 NC_011761.1 20852 21355 D identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079; polypeptide deformylase 20852..21355 Acidithiobacillus ferrooxidans ATCC 23270 7134361 YP_002424534.1 CDS fmt NC_011761.1 21348 22289 D identified by similarity to SP:O85732; match to protein family HMM PF00551; match to protein family HMM PF02911; match to protein family HMM TIGR00460; methionyl-tRNA formyltransferase 21348..22289 Acidithiobacillus ferrooxidans ATCC 23270 7135134 YP_002424535.1 CDS sun NC_011761.1 22286 23590 D identified by similarity to SP:P36929; match to protein family HMM PF01029; match to protein family HMM PF01189; match to protein family HMM TIGR00563; sun protein 22286..23590 Acidithiobacillus ferrooxidans ATCC 23270 7134190 YP_002424536.1 CDS AFE_0022 NC_011761.1 23581 24180 D identified by glimmer; putative; hypothetical protein 23581..24180 Acidithiobacillus ferrooxidans ATCC 23270 7137054 YP_002424537.1 CDS ntrY NC_011761.1 24231 26363 D identified by similarity to SP:Q04850; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; nitrogen regulation protein NtrY 24231..26363 Acidithiobacillus ferrooxidans ATCC 23270 7135482 YP_002424538.1 CDS ntrX NC_011761.1 26385 27791 D identified by similarity to SP:Q04849; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF00165; match to protein family HMM PF02954; nitrogen assimilation regulatory protein NtrX 26385..27791 Acidithiobacillus ferrooxidans ATCC 23270 7134801 YP_002424539.1 CDS AFE_0025 NC_011761.1 27788 27985 D identified by similarity to PIR:AG2141; hypothetical protein 27788..27985 Acidithiobacillus ferrooxidans ATCC 23270 7134300 YP_002424540.1 CDS AFE_0026 NC_011761.1 28118 29713 D identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase 28118..29713 Acidithiobacillus ferrooxidans ATCC 23270 7135359 YP_002424541.1 CDS AFE_0027 NC_011761.1 29755 31122 D identified by similarity to SP:Q06065; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; sigma-54 dependent transcriptional regulator/response regulator 29755..31122 Acidithiobacillus ferrooxidans ATCC 23270 7134561 YP_002424542.1 CDS tetH NC_011761.1 31545 33044 D identified by similarity to GB:AAB93983.1; match to protein family HMM PF01011; tetrathionate hydrolase 31545..33044 Acidithiobacillus ferrooxidans ATCC 23270 7134406 YP_002424543.1 CDS AFE_0028 NC_011761.1 33018 33254 R identified by glimmer; putative; hypothetical protein complement(33018..33254) Acidithiobacillus ferrooxidans ATCC 23270 7134475 YP_002424544.1 CDS AFE_0030 NC_011761.1 33338 34519 D identified by glimmer; putative; hypothetical protein 33338..34519 Acidithiobacillus ferrooxidans ATCC 23270 7134036 YP_002424545.1 CDS trmE NC_011761.1 34591 35946 R identified by similarity to SP:P25522; match to protein family HMM PF01926; match to protein family HMM TIGR00231; match to protein family HMM TIGR00450; match to protein family HMM TIGR00650; tRNA modification GTPase TrmE complement(34591..35946) Acidithiobacillus ferrooxidans ATCC 23270 7134148 YP_002424546.1 CDS AFE_0032 NC_011761.1 35984 37570 R identified by match to protein family HMM PF02096; inner membrane protein complement(35984..37570) Acidithiobacillus ferrooxidans ATCC 23270 7134876 YP_002424547.1 CDS AFE_0033 NC_011761.1 37586 37801 R identified by similarity to SP:P22847; match to protein family HMM PF01809; match to protein family HMM TIGR00278; hypothetical protein complement(37586..37801) Acidithiobacillus ferrooxidans ATCC 23270 7136232 YP_002424548.1 CDS rnpA NC_011761.1 37798 38148 R identified by match to protein family HMM PF00825; match to protein family HMM TIGR00188; ribonuclease P protein component complement(37798..38148) Acidithiobacillus ferrooxidans ATCC 23270 7134333 YP_002424549.1 CDS rpmH NC_011761.1 38153 38287 R in Escherichia coli transcription of this gene is enhanced by polyamines; 50S ribosomal protein L34 complement(38153..38287) Acidithiobacillus ferrooxidans ATCC 23270 7135183 YP_002424550.1 CDS AFE_0036 NC_011761.1 38358 40025 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; ABC transporter ATP-binding protein complement(38358..40025) Acidithiobacillus ferrooxidans ATCC 23270 7136760 YP_002424551.1 CDS AFE_0037 NC_011761.1 40123 41025 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(40123..41025) Acidithiobacillus ferrooxidans ATCC 23270 7135076 YP_002424552.1 CDS AFE_0038 NC_011761.1 41087 42199 R identified by match to protein family HMM PF00529; drug resistance secretion protein complement(41087..42199) Acidithiobacillus ferrooxidans ATCC 23270 7134992 YP_002424553.1 CDS AFE_0039 NC_011761.1 42174 43628 R identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system, drug efflux transporter outer membrane lipoprotein complement(42174..43628) Acidithiobacillus ferrooxidans ATCC 23270 7134139 YP_002424554.1 CDS AFE_0040 NC_011761.1 43609 45231 R identified by match to protein family HMM PF07690; EmrB/QacA family drug resistance transporter complement(43609..45231) Acidithiobacillus ferrooxidans ATCC 23270 7135072 YP_002424555.1 CDS AFE_0041 NC_011761.1 45787 46944 D identified by match to protein family HMM PF03595; C4-dicarboxylate transporter/malic acid transport protein 45787..46944 Acidithiobacillus ferrooxidans ATCC 23270 7137123 YP_002424556.1 CDS AFE_0042 NC_011761.1 46984 47796 D identified by match to protein family HMM TIGR01409; Tat (twin-arginine translocation) pathway signal sequence domain-containing protein 46984..47796 Acidithiobacillus ferrooxidans ATCC 23270 7135463 YP_002424557.1 CDS AFE_0043 NC_011761.1 47821 48831 D identified by similarity to SP:P27366; periplasmic solute-binding protein 47821..48831 Acidithiobacillus ferrooxidans ATCC 23270 7135737 YP_002424558.1 CDS doxD_2 NC_011761.1 48896 49966 D identified by match to protein family HMM PF07681; DoxD-like family protein 48896..49966 Acidithiobacillus ferrooxidans ATCC 23270 7134463 YP_002424559.1 CDS AFE_0045 NC_011761.1 50064 50711 D identified by similarity to GB:CAC43401.1; sulfur/pyrite/thiosulfate/sulfide-induced protein 50064..50711 Acidithiobacillus ferrooxidans ATCC 23270 7136682 YP_002424560.1 CDS AFE_0046 NC_011761.1 50772 51173 D identified by similarity to PIR:AB2294; hypothetical protein 50772..51173 Acidithiobacillus ferrooxidans ATCC 23270 7136257 YP_002424561.1 CDS AFE_0047 NC_011761.1 51204 51701 R identified by similarity to GB:BAC46291.1; match to protein family HMM PF00578; match to protein family HMM PF08534; hypothetical protein complement(51204..51701) Acidithiobacillus ferrooxidans ATCC 23270 7136252 YP_002424562.1 CDS doxD_1 NC_011761.1 51795 52877 R identified by match to protein family HMM PF07681; DoxD-like family protein complement(51795..52877) Acidithiobacillus ferrooxidans ATCC 23270 7136727 YP_002424563.1 CDS AFE_0049 NC_011761.1 52930 53943 R identified by similarity to SP:P27366; periplasmic solute-binding protein complement(52930..53943) Acidithiobacillus ferrooxidans ATCC 23270 7137165 YP_002424564.1 CDS AFE_0050 NC_011761.1 53965 54777 R identified by match to protein family HMM TIGR01409; Tat (twin-arginine translocation) pathway signal sequence domain-containing protein complement(53965..54777) Acidithiobacillus ferrooxidans ATCC 23270 7137185 YP_002424565.1 CDS AFE_0051 NC_011761.1 54776 55309 D identified by glimmer; putative; hypothetical protein 54776..55309 Acidithiobacillus ferrooxidans ATCC 23270 7134059 YP_002424566.1 CDS AFE_0052 NC_011761.1 55329 55991 R identified by glimmer; putative; hypothetical protein complement(55329..55991) Acidithiobacillus ferrooxidans ATCC 23270 7134069 YP_002424567.1 CDS AFE_0053 NC_011761.1 56115 57149 R identified by match to protein family HMM PF04143; hypothetical protein complement(56115..57149) Acidithiobacillus ferrooxidans ATCC 23270 7134740 YP_002424568.1 CDS AFE_0054 NC_011761.1 57310 57960 R identified by similarity to GB:BAC65273.1; match to protein family HMM PF01914; match to protein family HMM TIGR00427; MarC family integral membrane protein complement(57310..57960) Acidithiobacillus ferrooxidans ATCC 23270 7137082 YP_002424569.1 CDS AFE_0055 NC_011761.1 58078 58335 D identified by similarity to GB:AAM73313.1; match to protein family HMM TIGR02605; hypothetical protein 58078..58335 Acidithiobacillus ferrooxidans ATCC 23270 7134745 YP_002424570.1 CDS aspS NC_011761.1 58419 60209 D identified by similarity to SP:P21889; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM PF02938; match to protein family HMM TIGR00459; aspartyl-tRNA synthetase 58419..60209 Acidithiobacillus ferrooxidans ATCC 23270 7134339 YP_002424571.1 CDS nadA NC_011761.1 60310 61392 D 3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate; quinolinate synthetase 60310..61392 Acidithiobacillus ferrooxidans ATCC 23270 7134827 YP_002424572.1 CDS AFE_0058 NC_011761.1 61401 62012 D identified by match to protein family HMM PF01553; acyltransferase family protein 61401..62012 Acidithiobacillus ferrooxidans ATCC 23270 7134323 YP_002424573.1 CDS AFE_0059 NC_011761.1 62092 62844 D identified by similarity to SP:Q8EEF0; match to protein family HMM PF01709; match to protein family HMM TIGR01033; hypothetical protein 62092..62844 Acidithiobacillus ferrooxidans ATCC 23270 7135596 YP_002424574.1 CDS ruvC NC_011761.1 62927 63427 D endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase 62927..63427 Acidithiobacillus ferrooxidans ATCC 23270 7136495 YP_002424575.1 CDS ruvA NC_011761.1 63456 64037 D plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA 63456..64037 Acidithiobacillus ferrooxidans ATCC 23270 7137210 YP_002424576.1 CDS ruvB NC_011761.1 64080 65102 D identified by similarity to SP:Q51426; match to protein family HMM PF00004; match to protein family HMM PF05491; match to protein family HMM PF05496; match to protein family HMM PF07728; match to protein family HMM TIGR00635; Holliday junction DNA helicase RuvB 64080..65102 Acidithiobacillus ferrooxidans ATCC 23270 7135023 YP_002424577.1 CDS ybgC NC_011761.1 65092 65514 D identified by match to protein family HMM PF03061; match to protein family HMM TIGR00051; match to protein family HMM TIGR02799; tol-pal system-associated acyl-CoA thioesterase 65092..65514 Acidithiobacillus ferrooxidans ATCC 23270 7137117 YP_002424578.1 CDS tolQ NC_011761.1 65521 66222 D identified by similarity to SP:P05828; match to protein family HMM PF01618; match to protein family HMM TIGR02796; TolQ protein 65521..66222 Acidithiobacillus ferrooxidans ATCC 23270 7134145 YP_002424579.1 CDS tolR NC_011761.1 66219 66629 D identified by similarity to SP:P05829; match to protein family HMM PF02472; match to protein family HMM TIGR02801; TolR protein 66219..66629 Acidithiobacillus ferrooxidans ATCC 23270 7137270 YP_002424580.1 CDS tolA NC_011761.1 66626 67579 D identified by similarity to GB:CAB50780.1; match to protein family HMM TIGR01352; match to protein family HMM TIGR02794; TolA protein 66626..67579 Acidithiobacillus ferrooxidans ATCC 23270 7136493 YP_002424581.1 CDS tolB NC_011761.1 67572 68840 D identified by similarity to SP:P19935; match to protein family HMM PF04052; match to protein family HMM PF07676; match to protein family HMM TIGR02800; tol-pal system beta propeller repeat protein TolB 67572..68840 Acidithiobacillus ferrooxidans ATCC 23270 7135036 YP_002424582.1 CDS AFE_0068 NC_011761.1 68882 69571 R identified by match to protein family HMM PF06508; match to protein family HMM TIGR00364; exsB protein complement(68882..69571) Acidithiobacillus ferrooxidans ATCC 23270 7134249 YP_002424583.1 CDS AFE_0069 NC_011761.1 69574 70218 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(69574..70218) Acidithiobacillus ferrooxidans ATCC 23270 7135923 YP_002424584.1 CDS AFE_0070 NC_011761.1 70218 71036 R identified by similarity to GB:AAM86603.1; match to protein family HMM PF00515; match to protein family HMM TIGR02795; hypothetical protein complement(70218..71036) Acidithiobacillus ferrooxidans ATCC 23270 7135489 YP_002424585.1 CDS AFE_0071 NC_011761.1 71057 71635 R identified by similarity to SP:P07176; match to protein family HMM PF00691; match to protein family HMM TIGR02802; peptidoglycan-associated lipoprotein complement(71057..71635) Acidithiobacillus ferrooxidans ATCC 23270 7137066 YP_002424586.1 CDS AFE_0072 NC_011761.1 71970 72170 D identified by similarity to PIR:S76075; hypothetical protein 71970..72170 Acidithiobacillus ferrooxidans ATCC 23270 7136401 YP_002424587.1 CDS AFE_0073 NC_011761.1 72256 73722 R identified by similarity to SP:P26406; match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025; undecaprenyl-phosphate galactosephosphotransferase complement(72256..73722) Acidithiobacillus ferrooxidans ATCC 23270 7135318 YP_002424588.1 CDS AFE_0074 NC_011761.1 73707 74717 D identified by match to protein family HMM PF02706; chain length determinant family protein 73707..74717 Acidithiobacillus ferrooxidans ATCC 23270 7135515 YP_002424589.1 CDS AFE_0075 NC_011761.1 74805 75164 D identified by similarity to GB:AAN48775.1; match to protein family HMM PF01047; hypothetical protein 74805..75164 Acidithiobacillus ferrooxidans ATCC 23270 7135330 YP_002424590.1 CDS AFE_0076 NC_011761.1 75356 76855 D identified by similarity to SP:P37781; match to protein family HMM PF01943; polysaccharide biosynthesis protein 75356..76855 Acidithiobacillus ferrooxidans ATCC 23270 7135556 YP_002424591.1 CDS AFE_0077 NC_011761.1 76845 77906 D identified by similarity to GB:AAN49860.1; match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein 76845..77906 Acidithiobacillus ferrooxidans ATCC 23270 7134466 YP_002424592.1 CDS AFE_0078 NC_011761.1 77969 78952 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 77969..78952 Acidithiobacillus ferrooxidans ATCC 23270 7135436 YP_002424593.1 CDS AFE_0079 NC_011761.1 78949 80160 D identified by similarity to PIR:E96008; match to protein family HMM PF00534; glycosyltransferase 78949..80160 Acidithiobacillus ferrooxidans ATCC 23270 7136198 YP_002424594.1 CDS AFE_0080 NC_011761.1 80176 81456 D hypothetical protein 80176..81456 Acidithiobacillus ferrooxidans ATCC 23270 7137220 YP_002424595.1 CDS mtfA NC_011761.1 81463 82503 D identified by similarity to GB:AAF04384.1; match to protein family HMM PF00534; mannosyltransferase 81463..82503 Acidithiobacillus ferrooxidans ATCC 23270 7134614 YP_002424596.1 CDS AFE_0082 NC_011761.1 82571 83497 D identified by similarity to SP:P26403; match to protein family HMM PF00535; O antigen biosynthesis rhamnosyltransferase 82571..83497 Acidithiobacillus ferrooxidans ATCC 23270 7134928 YP_002424597.1 CDS AFE_0085 NC_011761.1 84598 84819 D prevent-host-death family protein 84598..84819 Acidithiobacillus ferrooxidans ATCC 23270 7135847 YP_002424598.1 CDS AFE_0086 NC_011761.1 84819 85232 D identified by similarity to PIR:B70949; hypothetical protein 84819..85232 Acidithiobacillus ferrooxidans ATCC 23270 7136859 YP_002424599.1 CDS AFE_0087 NC_011761.1 85229 85519 D identified by glimmer; putative; hypothetical protein 85229..85519 Acidithiobacillus ferrooxidans ATCC 23270 7137028 YP_002424600.1 CDS AFE_0088 NC_011761.1 85685 85960 D identified by match to protein family HMM PF05015; plasmid maintenance system killer protein 85685..85960 Acidithiobacillus ferrooxidans ATCC 23270 7136176 YP_002424601.1 CDS AFE_0089 NC_011761.1 85976 86293 D identified by match to protein family HMM TIGR02607; DNA-binding protein 85976..86293 Acidithiobacillus ferrooxidans ATCC 23270 7136133 YP_002424602.1 CDS AFE_0090 NC_011761.1 86308 86487 D identified by similarity to GB:AAN33038.1; hypothetical protein 86308..86487 Acidithiobacillus ferrooxidans ATCC 23270 7137212 YP_002424603.1 CDS AFE_0091 NC_011761.1 86624 86884 R identified by glimmer; putative; hypothetical protein complement(86624..86884) Acidithiobacillus ferrooxidans ATCC 23270 7136536 YP_002424604.1 CDS AFE_0092 NC_011761.1 86994 88070 D identified by match to protein family HMM PF02661; fic family protein 86994..88070 Acidithiobacillus ferrooxidans ATCC 23270 7136146 YP_002424605.1 CDS AFE_0094 NC_011761.1 88630 88938 R identified by match to protein family HMM TIGR01552; prevent-host-death family protein complement(88630..88938) Acidithiobacillus ferrooxidans ATCC 23270 7137035 YP_002424606.1 CDS AFE_0095 NC_011761.1 88956 89129 R identified by glimmer; putative; hypothetical protein complement(88956..89129) Acidithiobacillus ferrooxidans ATCC 23270 7136391 YP_002424607.1 CDS AFE_0096 NC_011761.1 89240 89668 R identified by glimmer; putative; hypothetical protein complement(89240..89668) Acidithiobacillus ferrooxidans ATCC 23270 7135038 YP_002424608.1 CDS AFE_0097 NC_011761.1 89671 90102 R identified by glimmer; putative; hypothetical protein complement(89671..90102) Acidithiobacillus ferrooxidans ATCC 23270 7136456 YP_002424609.1 CDS AFE_0098 NC_011761.1 90248 92506 R identified by match to protein family HMM PF00070; match to protein family HMM PF07681; match to protein family HMM PF07992; DoxD family protein/pyridine nucleotide-disulfide oxidoreductase complement(90248..92506) Acidithiobacillus ferrooxidans ATCC 23270 7135092 YP_002424610.1 CDS AFE_0099 NC_011761.1 92626 93072 D identified by glimmer; putative; hypothetical protein 92626..93072 Acidithiobacillus ferrooxidans ATCC 23270 7135960 YP_002424611.1 CDS AFE_0100 NC_011761.1 93079 94164 R identified by similarity to GB:AAM71795.1; match to protein family HMM PF00529; hypothetical protein complement(93079..94164) Acidithiobacillus ferrooxidans ATCC 23270 7135644 YP_002424612.1 CDS AFE_0101 NC_011761.1 94154 94846 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(94154..94846) Acidithiobacillus ferrooxidans ATCC 23270 7134156 YP_002424613.1 CDS AFE_0102 NC_011761.1 94848 95984 R identified by match to protein family HMM PF02687; ABC transporter permease complement(94848..95984) Acidithiobacillus ferrooxidans ATCC 23270 7135504 YP_002424614.1 CDS AFE_0103 NC_011761.1 95981 96208 R identified by glimmer; putative; hypothetical protein complement(95981..96208) Acidithiobacillus ferrooxidans ATCC 23270 7137249 YP_002424615.1 CDS AFE_0104 NC_011761.1 96317 96553 D identified by glimmer; putative; hypothetical protein 96317..96553 Acidithiobacillus ferrooxidans ATCC 23270 7135427 YP_002424616.1 CDS AFE_0105 NC_011761.1 96590 97855 R identified by match to protein family HMM PF01566; metal ion transporter NRAMP family complement(96590..97855) Acidithiobacillus ferrooxidans ATCC 23270 7137104 YP_002424617.1 CDS AFE_0106 NC_011761.1 97942 99282 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(97942..99282) Acidithiobacillus ferrooxidans ATCC 23270 7136045 YP_002424618.1 CDS AFE_0107 NC_011761.1 99246 99956 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(99246..99956) Acidithiobacillus ferrooxidans ATCC 23270 7134381 YP_002424619.1 CDS AFE_0108 NC_011761.1 100177 101736 D identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; NodT family RND efflux system outer membrane lipoprotein 100177..101736 Acidithiobacillus ferrooxidans ATCC 23270 7136271 YP_002424620.1 CDS AFE_0109 NC_011761.1 101733 102815 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 101733..102815 Acidithiobacillus ferrooxidans ATCC 23270 7136280 YP_002424621.1 CDS AFE_0111 NC_011761.1 105998 106156 D identified by glimmer; putative; hypothetical protein 105998..106156 Acidithiobacillus ferrooxidans ATCC 23270 7134177 YP_002424622.1 CDS AFE_0112 NC_011761.1 106392 106949 D identified by similarity to GB:BAC61454.1; match to protein family HMM PF06041; hypothetical protein 106392..106949 Acidithiobacillus ferrooxidans ATCC 23270 7136064 YP_002424623.1 CDS AFE_0113 NC_011761.1 107062 107265 D identified by glimmer; putative; hypothetical protein 107062..107265 Acidithiobacillus ferrooxidans ATCC 23270 7135016 YP_002424624.1 CDS AFE_0114 NC_011761.1 107262 108281 D identified by similarity to SP:P23872; match to protein family HMM PF07859; lipase/esterase 107262..108281 Acidithiobacillus ferrooxidans ATCC 23270 7137094 YP_002424625.1 CDS AFE_0115 NC_011761.1 108301 109737 D identified by match to protein family HMM PF03724; hypothetical protein 108301..109737 Acidithiobacillus ferrooxidans ATCC 23270 7135500 YP_002424626.1 CDS AFE_0116 NC_011761.1 110119 110220 R identified by glimmer; putative; hypothetical protein complement(110119..110220) Acidithiobacillus ferrooxidans ATCC 23270 7135098 YP_002424627.1 CDS AFE_0117 NC_011761.1 110500 111384 D identified by similarity to SP:P77234; match to protein family HMM PF08238; hypothetical protein 110500..111384 Acidithiobacillus ferrooxidans ATCC 23270 7134598 YP_002424628.1 CDS AFE_0118 NC_011761.1 111474 111686 R identified by glimmer; putative; hypothetical protein complement(111474..111686) Acidithiobacillus ferrooxidans ATCC 23270 7134863 YP_002424629.1 CDS AFE_0119 NC_011761.1 111694 112356 D identified by match to protein family HMM PF00027; match to protein family HMM PF00325; CarD family transcriptional regulator 111694..112356 Acidithiobacillus ferrooxidans ATCC 23270 7135547 YP_002424630.1 CDS AFE_0120 NC_011761.1 112446 112652 D identified by similarity to GB:AAP77746.1; hypothetical protein 112446..112652 Acidithiobacillus ferrooxidans ATCC 23270 7135132 YP_002424631.1 CDS AFE_0121 NC_011761.1 112734 112865 R identified by glimmer; putative; hypothetical protein complement(112734..112865) Acidithiobacillus ferrooxidans ATCC 23270 7135366 YP_002424632.1 CDS AFE_0122 NC_011761.1 112952 113305 D hypothetical protein 112952..113305 Acidithiobacillus ferrooxidans ATCC 23270 7135675 YP_002424633.1 CDS gcp NC_011761.1 113298 114305 D identified by similarity to SP:P36175; match to protein family HMM PF00814; match to protein family HMM TIGR00329; O-sialoglycoprotein endopeptidase 113298..114305 Acidithiobacillus ferrooxidans ATCC 23270 7135769 YP_002424634.1 CDS AFE_0124 NC_011761.1 114305 114832 D identified by match to protein family HMM PF00515; hypothetical protein 114305..114832 Acidithiobacillus ferrooxidans ATCC 23270 7134067 YP_002424635.1 CDS AFE_0125 NC_011761.1 114839 115435 R identified by similarity to GB:CAE33513.1; match to protein family HMM PF02660; match to protein family HMM TIGR00023; hypothetical protein complement(114839..115435) Acidithiobacillus ferrooxidans ATCC 23270 7134448 YP_002424636.1 CDS folB NC_011761.1 115508 115867 D identified by similarity to SP:P31055; match to protein family HMM PF02152; match to protein family HMM TIGR00525; match to protein family HMM TIGR00526; dihydroneopterin aldolase 115508..115867 Acidithiobacillus ferrooxidans ATCC 23270 7134375 YP_002424637.1 CDS rimO NC_011761.1 115885 117225 R catalyzes the methylthiolation of an aspartic acid residue of the S12 protein of the 30S ribosomal subunit; 30S ribosomal protein S12 methylthiotransferase complement(115885..117225) Acidithiobacillus ferrooxidans ATCC 23270 7134342 YP_002424638.1 CDS AFE_0128 NC_011761.1 117222 117614 R identified by match to protein family HMM PF01106; NifU domain-containing protein complement(117222..117614) Acidithiobacillus ferrooxidans ATCC 23270 7134498 YP_002424639.1 CDS AFE_0129 NC_011761.1 117611 118351 R identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short-chain dehydrogenase complement(117611..118351) Acidithiobacillus ferrooxidans ATCC 23270 7135135 YP_002424640.1 CDS AFE_0130 NC_011761.1 118133 119488 D identified by similarity to GB:AAM35577.1; match to protein family HMM PF02636; hypothetical protein 118133..119488 Acidithiobacillus ferrooxidans ATCC 23270 7135242 YP_002424641.1 CDS AFE_0131 NC_011761.1 119591 120526 R hypothetical protein complement(119591..120526) Acidithiobacillus ferrooxidans ATCC 23270 7135091 YP_002424642.1 CDS AFE_0133 NC_011761.1 120599 120724 D identified by glimmer; putative; hypothetical protein 120599..120724 Acidithiobacillus ferrooxidans ATCC 23270 7135289 YP_002424643.1 CDS AFE_0132 NC_011761.1 120643 120870 R identified by glimmer; putative; hypothetical protein complement(120643..120870) Acidithiobacillus ferrooxidans ATCC 23270 7135679 YP_002424644.1 CDS hemN NC_011761.1 121003 122394 R identified by similarity to SP:P32131; match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00538; oxygen-independent coproporphyrinogen III oxidase complement(121003..122394) Acidithiobacillus ferrooxidans ATCC 23270 7136734 YP_002424645.1 CDS AFE_0135 NC_011761.1 122432 123364 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(122432..123364) Acidithiobacillus ferrooxidans ATCC 23270 7134203 YP_002424646.1 CDS AFE_0136 NC_011761.1 123387 123512 R identified by glimmer; putative; hypothetical protein complement(123387..123512) Acidithiobacillus ferrooxidans ATCC 23270 7136630 YP_002424647.1 CDS AFE_0137 NC_011761.1 123600 124943 D identified by similarity to PIR:D83343; hypothetical protein 123600..124943 Acidithiobacillus ferrooxidans ATCC 23270 7136225 YP_002424648.1 CDS AFE_0138 NC_011761.1 125017 126126 R identified by similarity to GB:AAL23754.1; match to protein family HMM PF01075; match to protein family HMM TIGR02195; LPS heptosyltransferase II complement(125017..126126) Acidithiobacillus ferrooxidans ATCC 23270 7136390 YP_002424649.1 CDS AFE_0139 NC_011761.1 126149 126913 R identified by similarity to PIR:A81668; hypothetical protein complement(126149..126913) Acidithiobacillus ferrooxidans ATCC 23270 7134532 YP_002424650.1 CDS AFE_0140 NC_011761.1 126917 128302 R identified by match to protein family HMM PF01565; match to protein family HMM PF02913; oxidase, FAD-binding complement(126917..128302) Acidithiobacillus ferrooxidans ATCC 23270 7136490 YP_002424651.1 CDS AFE_0141 NC_011761.1 128299 129375 R identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00441; match to protein family HMM TIGR02199; phosphoheptose isomerase complement(128299..129375) Acidithiobacillus ferrooxidans ATCC 23270 7135632 YP_002424652.1 CDS AFE_0142 NC_011761.1 129372 129737 R identified by match to protein family HMM PF02021; match to protein family HMM TIGR00252; hypothetical protein complement(129372..129737) Acidithiobacillus ferrooxidans ATCC 23270 7137131 YP_002424653.1 CDS AFE_0143 NC_011761.1 129741 131579 R lipoprotein complement(129741..131579) Acidithiobacillus ferrooxidans ATCC 23270 7136432 YP_002424654.1 CDS AFE_0144 NC_011761.1 131649 132524 D identified by similarity to GB:AAN66950.1; match to protein family HMM PF00590; match to protein family HMM TIGR00096; tetrapyrrole methylase family protein 131649..132524 Acidithiobacillus ferrooxidans ATCC 23270 7136627 YP_002424655.1 CDS AFE_0146 NC_011761.1 132816 132965 D identified by glimmer; putative; hypothetical protein 132816..132965 Acidithiobacillus ferrooxidans ATCC 23270 7136002 YP_002424656.1 CDS AFE_0147 NC_011761.1 133054 133299 R identified by similarity to GB:AAQ58419.1; hypothetical protein complement(133054..133299) Acidithiobacillus ferrooxidans ATCC 23270 7135975 YP_002424657.1 CDS AFE_0149 NC_011761.1 133298 133624 D identified by glimmer; putative; hypothetical protein 133298..133624 Acidithiobacillus ferrooxidans ATCC 23270 7134288 YP_002424658.1 CDS AFE_0148 NC_011761.1 133571 134074 R identified by glimmer; putative; hypothetical protein complement(133571..134074) Acidithiobacillus ferrooxidans ATCC 23270 7136619 YP_002424659.1 CDS AFE_0150 NC_011761.1 134110 134904 R identified by similarity to GB:CAE33855.1; hypothetical protein complement(134110..134904) Acidithiobacillus ferrooxidans ATCC 23270 7134658 YP_002424660.1 CDS AFE_0151 NC_011761.1 135019 135417 R identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein complement(135019..135417) Acidithiobacillus ferrooxidans ATCC 23270 7136553 YP_002424661.1 CDS AFE_0152 NC_011761.1 135448 135831 R identified by similarity to PIR:D84128; match to protein family HMM PF04241; hypothetical protein complement(135448..135831) Acidithiobacillus ferrooxidans ATCC 23270 7136264 YP_002424662.1 CDS AFE_0153 NC_011761.1 136020 136712 D identified by match to protein family HMM PF01988; integral membrane protein 136020..136712 Acidithiobacillus ferrooxidans ATCC 23270 7137113 YP_002424663.1 CDS AFE_0154 NC_011761.1 136964 137620 D identified by match to protein family HMM PF00230; MIP family channel protein 136964..137620 Acidithiobacillus ferrooxidans ATCC 23270 7135194 YP_002424664.1 CDS AFE_0155 NC_011761.1 137788 138393 D identified by match to protein family HMM PF00300; phosphoglycerate mutase family protein 137788..138393 Acidithiobacillus ferrooxidans ATCC 23270 7134195 YP_002424665.1 CDS speE NC_011761.1 138424 139374 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(138424..139374) Acidithiobacillus ferrooxidans ATCC 23270 7136730 YP_002424666.1 CDS AFE_0157 NC_011761.1 139376 139777 R identified by similarity to SP:O34426; match to protein family HMM PF02675; s-adenosylmethionine decarboxylase proenzyme complement(139376..139777) Acidithiobacillus ferrooxidans ATCC 23270 7137244 YP_002424667.1 CDS AFE_0158 NC_011761.1 140091 140921 D identified by similarity to GB:AAD17957.1; match to protein family HMM PF00005; toluene ABC transporter ATP-binding protein 140091..140921 Acidithiobacillus ferrooxidans ATCC 23270 7136458 YP_002424668.1 CDS AFE_0159 NC_011761.1 140924 141706 D identified by similarity to GB:AAD17958.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056; toluene tolerance protein Ttg2B 140924..141706 Acidithiobacillus ferrooxidans ATCC 23270 7134813 YP_002424669.1 CDS AFE_0160 NC_011761.1 141721 142179 D identified by match to protein family HMM PF02470; mce-like protein 141721..142179 Acidithiobacillus ferrooxidans ATCC 23270 7135139 YP_002424670.1 CDS AFE_0161 NC_011761.1 142196 142834 D identified by match to protein family HMM PF05494; toluene tolerance protein 142196..142834 Acidithiobacillus ferrooxidans ATCC 23270 7134984 YP_002424671.1 CDS AFE_0162 NC_011761.1 142906 143148 D identified by similarity to GB:CAD16664.1; hypothetical protein 142906..143148 Acidithiobacillus ferrooxidans ATCC 23270 7134972 YP_002424672.1 CDS AFE_0163 NC_011761.1 143141 144061 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 143141..144061 Acidithiobacillus ferrooxidans ATCC 23270 7134653 YP_002424673.1 CDS AFE_0164 NC_011761.1 144064 144327 D identified by match to protein family HMM PF01479; S4 domain-containing protein 144064..144327 Acidithiobacillus ferrooxidans ATCC 23270 7136767 YP_002424674.1 CDS pdxA NC_011761.1 144324 145325 D identified by similarity to SP:P19624; match to protein family HMM PF04166; match to protein family HMM TIGR00557; 4-hydroxythreonine-4-phosphate dehydrogenase 144324..145325 Acidithiobacillus ferrooxidans ATCC 23270 7134988 YP_002424675.1 CDS AFE_0166 NC_011761.1 145352 145906 R identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein complement(145352..145906) Acidithiobacillus ferrooxidans ATCC 23270 7134905 YP_002424676.1 CDS ksgA NC_011761.1 145972 146775 D identified by similarity to SP:P06992; match to protein family HMM PF00398; match to protein family HMM TIGR00755; dimethyladenosine transferase 145972..146775 Acidithiobacillus ferrooxidans ATCC 23270 7136306 YP_002424677.1 CDS AFE_0169 NC_011761.1 146772 147239 D identified by similarity to GB:CAD74705.1; hypothetical protein 146772..147239 Acidithiobacillus ferrooxidans ATCC 23270 7134537 YP_002424678.1 CDS AFE_0168 NC_011761.1 147205 148095 R identified by glimmer; putative; hypothetical protein complement(147205..148095) Acidithiobacillus ferrooxidans ATCC 23270 7137085 YP_002424679.1 CDS argS NC_011761.1 148046 149785 R catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase complement(148046..149785) Acidithiobacillus ferrooxidans ATCC 23270 7134449 YP_002424680.1 CDS AFE_0171 NC_011761.1 149925 151529 R identified by match to protein family HMM PF07690; EmrB/QacA subfamily drug resistance transporter complement(149925..151529) Acidithiobacillus ferrooxidans ATCC 23270 7137202 YP_002424681.1 CDS AFE_0172 NC_011761.1 151578 152471 D identified by similarity to SP:P25544; match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 151578..152471 Acidithiobacillus ferrooxidans ATCC 23270 7137215 YP_002424682.1 CDS prmB NC_011761.1 152487 153398 R identified by match to protein family HMM PF05175; match to protein family HMM PF08242; match to protein family HMM TIGR00536; match to protein family HMM TIGR03533; ribosomal protein L3 N-methyltransferase complement(152487..153398) Acidithiobacillus ferrooxidans ATCC 23270 7136526 YP_002424683.1 CDS xth-2 NC_011761.1 153399 154160 R identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III complement(153399..154160) Acidithiobacillus ferrooxidans ATCC 23270 7136116 YP_002424684.1 CDS AFE_0175 NC_011761.1 154173 154481 R identified by glimmer; putative; hypothetical protein complement(154173..154481) Acidithiobacillus ferrooxidans ATCC 23270 7136036 YP_002424685.1 CDS AFE_0176 NC_011761.1 154478 155335 R identified by similarity to PIR:C83019; match to protein family HMM PF04378; hypothetical protein complement(154478..155335) Acidithiobacillus ferrooxidans ATCC 23270 7134480 YP_002424686.1 CDS AFE_0177 NC_011761.1 155427 156029 D identified by similarity to GB:AAQ60970.1; match to protein family HMM PF02798; glutathione S-transferase family protein 155427..156029 Acidithiobacillus ferrooxidans ATCC 23270 7134349 YP_002424687.1 CDS xth-1 NC_011761.1 156035 156808 D identified by match to protein family HMM PF03372; match to protein family HMM TIGR00195; match to protein family HMM TIGR00633; exodeoxyribonuclease III 156035..156808 Acidithiobacillus ferrooxidans ATCC 23270 7136953 YP_002424688.1 CDS hemH NC_011761.1 156805 157818 D identified by similarity to SP:P23871; match to protein family HMM PF00762; match to protein family HMM TIGR00109; ferrochelatase 156805..157818 Acidithiobacillus ferrooxidans ATCC 23270 7136900 YP_002424689.1 CDS AFE_0180 NC_011761.1 157886 158374 D identified by similarity to SP:P30856; match to protein family HMM PF00254; FKBP-type peptidyl-prolyl cis-trans isomerase 157886..158374 Acidithiobacillus ferrooxidans ATCC 23270 7134479 YP_002424690.1 CDS anmK NC_011761.1 158423 159604 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 158423..159604 Acidithiobacillus ferrooxidans ATCC 23270 7135635 YP_002424691.1 CDS aroE NC_011761.1 159585 160481 D identified by similarity to SP:P54374; match to protein family HMM PF01488; match to protein family HMM PF08501; match to protein family HMM TIGR00507; shikimate 5-dehydrogenase 159585..160481 Acidithiobacillus ferrooxidans ATCC 23270 7136987 YP_002424692.1 CDS AFE_0183 NC_011761.1 160451 162160 D identified by similarity to SP:P45792; match to protein family HMM PF00437; match to protein family HMM PF05157; match to protein family HMM TIGR02538; type IV pilus assembly protein 160451..162160 Acidithiobacillus ferrooxidans ATCC 23270 7134301 YP_002424693.1 CDS AFE_0184 NC_011761.1 162300 163892 D identified by similarity to SP:P33639; match to protein family HMM PF00512; match to protein family HMM PF02518; sensor protein PilS 162300..163892 Acidithiobacillus ferrooxidans ATCC 23270 7135982 YP_002424694.1 CDS AFE_0185 NC_011761.1 163903 165240 D identified by similarity to SP:Q00934; match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; type IV fimbriae expression regulatory protein PilR 163903..165240 Acidithiobacillus ferrooxidans ATCC 23270 7136186 YP_002424695.1 CDS pilD NC_011761.1 165237 166037 D identified by similarity to SP:P22610; match to protein family HMM PF01478; match to protein family HMM PF06750; type IV pilus prepilin peptidase PilD 165237..166037 Acidithiobacillus ferrooxidans ATCC 23270 7136429 YP_002424696.1 CDS coaE NC_011761.1 166038 166652 D identified by similarity to SP:P36679; match to protein family HMM PF01121; match to protein family HMM TIGR00152; dephospho-CoA kinase 166038..166652 Acidithiobacillus ferrooxidans ATCC 23270 7135412 YP_002424697.1 CDS AFE_0188 NC_011761.1 166771 167523 D identified by similarity to GB:AAO89714.1; hypothetical protein 166771..167523 Acidithiobacillus ferrooxidans ATCC 23270 7137132 YP_002424698.1 CDS fbp NC_011761.1 167554 168573 D catalyzes the formation of D-fructose 6-phosphate from fructose-1,6-bisphosphate; fructose-1,6-bisphosphatase 167554..168573 Acidithiobacillus ferrooxidans ATCC 23270 7135944 YP_002424699.1 CDS sspB NC_011761.1 168768 169193 D identified by similarity to SP:P25663; match to protein family HMM PF04386; stringent starvation protein B 168768..169193 Acidithiobacillus ferrooxidans ATCC 23270 7136894 YP_002424700.1 CDS AFE_0192 NC_011761.1 169190 169855 D identified by match to protein family HMM PF01464; transglycosylase 169190..169855 Acidithiobacillus ferrooxidans ATCC 23270 7136065 YP_002424701.1 CDS AFE_0191 NC_011761.1 169837 170079 R identified by match to protein family HMM PF02954; Fis family transcriptional regulator complement(169837..170079) Acidithiobacillus ferrooxidans ATCC 23270 7136626 YP_002424702.1 CDS AFE_0193 NC_011761.1 170091 170723 R identified by match to protein family HMM TIGR02098; MJ0042 family finger-like domain-containing protein complement(170091..170723) Acidithiobacillus ferrooxidans ATCC 23270 7136150 YP_002424703.1 CDS prmA NC_011761.1 170726 171604 R identified by similarity to SP:P28637; match to protein family HMM PF06325; match to protein family HMM TIGR00406; 50S ribosomal protein L11 methyltransferase complement(170726..171604) Acidithiobacillus ferrooxidans ATCC 23270 7134215 YP_002424704.1 CDS accC NC_011761.1 171601 172947 R identified by similarity to SP:P37798; match to protein family HMM PF00289; match to protein family HMM PF02222; match to protein family HMM PF02785; match to protein family HMM PF02786; match to protein family HMM TIGR00514; acetyl-CoA carboxylase, biotin carboxylase complement(171601..172947) Acidithiobacillus ferrooxidans ATCC 23270 7135356 YP_002424705.1 CDS accB NC_011761.1 172949 173419 R identified by similarity to SP:P37799; match to protein family HMM PF00364; match to protein family HMM TIGR00531; acetyl-CoA carboxylase, biotin carboxyl carrier protein complement(172949..173419) Acidithiobacillus ferrooxidans ATCC 23270 7135196 YP_002424706.1 CDS aroQ NC_011761.1 173439 173900 R catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase complement(173439..173900) Acidithiobacillus ferrooxidans ATCC 23270 7134995 YP_002424707.1 CDS AFE_0198 NC_011761.1 174068 174445 R identified by match to protein family HMM PF01638; transcriptional regulator complement(174068..174445) Acidithiobacillus ferrooxidans ATCC 23270 7137061 YP_002424708.1 CDS AFE_0199 NC_011761.1 174782 175639 D identified by similarity to GB:CAE34827.1; hypothetical protein 174782..175639 Acidithiobacillus ferrooxidans ATCC 23270 7136108 YP_002424709.1 CDS ftsZ NC_011761.1 175761 176924 R identified by similarity to SP:P06138; match to protein family HMM PF00091; match to protein family HMM PF03953; match to protein family HMM TIGR00065; cell division protein FtsZ complement(175761..176924) Acidithiobacillus ferrooxidans ATCC 23270 7136771 YP_002424710.1 CDS ftsA NC_011761.1 176983 178251 R identified by similarity to SP:P06137; match to protein family HMM PF02491; match to protein family HMM TIGR01174; cell division protein FtsA complement(176983..178251) Acidithiobacillus ferrooxidans ATCC 23270 7135941 YP_002424711.1 CDS AFE_0202 NC_011761.1 178282 179124 R identified by similarity to SP:P06136; match to protein family HMM PF03799; match to protein family HMM PF08478; cell division protein FtsQ complement(178282..179124) Acidithiobacillus ferrooxidans ATCC 23270 7135533 YP_002424712.1 CDS ddlB NC_011761.1 179117 180043 R identified by similarity to SP:P07862; match to protein family HMM PF01820; match to protein family HMM PF07478; match to protein family HMM TIGR01205; D-alanine--D-alanine ligase complement(179117..180043) Acidithiobacillus ferrooxidans ATCC 23270 7134436 YP_002424713.1 CDS murB NC_011761.1 180036 180923 R catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase complement(180036..180923) Acidithiobacillus ferrooxidans ATCC 23270 7135740 YP_002424714.1 CDS murC NC_011761.1 180920 182314 R identified by similarity to SP:P17952; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01082; UDP-N-acetylmuramate--L-alanine ligase complement(180920..182314) Acidithiobacillus ferrooxidans ATCC 23270 7135338 YP_002424715.1 CDS murG NC_011761.1 182307 183389 R identified by similarity to SP:P17443; match to protein family HMM PF03033; match to protein family HMM PF04101; match to protein family HMM TIGR01133; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-UDP N- acetylglucosamine transferase complement(182307..183389) Acidithiobacillus ferrooxidans ATCC 23270 7135600 YP_002424716.1 CDS ftsW NC_011761.1 183382 184554 R identified by similarity to SP:P16457; match to protein family HMM PF01098; match to protein family HMM TIGR02614; cell division protein FtsW complement(183382..184554) Acidithiobacillus ferrooxidans ATCC 23270 7135399 YP_002424717.1 CDS murD NC_011761.1 184551 185897 R identified by similarity to SP:P14900; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01087; UDP-N-acetylmuramoylalanine--D-glutamate ligase complement(184551..185897) Acidithiobacillus ferrooxidans ATCC 23270 7135526 YP_002424718.1 CDS mraY NC_011761.1 185899 186981 R First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(185899..186981) Acidithiobacillus ferrooxidans ATCC 23270 7136610 YP_002424719.1 CDS murF NC_011761.1 186981 188333 R identified by similarity to SP:P11880; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01143; UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase complement(186981..188333) Acidithiobacillus ferrooxidans ATCC 23270 7135487 YP_002424720.1 CDS murE NC_011761.1 188330 189781 R identified by similarity to SP:P22188; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01085; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase complement(188330..189781) Acidithiobacillus ferrooxidans ATCC 23270 7135571 YP_002424721.1 CDS ftsI NC_011761.1 189768 191552 R identified by similarity to SP:P04286; match to protein family HMM PF00905; match to protein family HMM PF03717; peptidoglycan synthetase FtsI complement(189768..191552) Acidithiobacillus ferrooxidans ATCC 23270 7135260 YP_002424722.1 CDS ftsL NC_011761.1 191549 191812 R identified by match to protein family HMM PF04999; match to protein family HMM TIGR02209; cell division protein FtsL complement(191549..191812) Acidithiobacillus ferrooxidans ATCC 23270 7135335 YP_002424723.1 CDS mraW NC_011761.1 191802 192767 R identified by similarity to SP:P18595; match to protein family HMM PF01795; match to protein family HMM TIGR00006; S-adenosyl-methyltransferase MraW complement(191802..192767) Acidithiobacillus ferrooxidans ATCC 23270 7136227 YP_002424724.1 CDS mraZ NC_011761.1 192764 193219 R identified by similarity to GB:AAN78597.1; match to protein family HMM PF02381; match to protein family HMM TIGR00242; mraZ protein complement(192764..193219) Acidithiobacillus ferrooxidans ATCC 23270 7134314 YP_002424725.1 CDS AFE_0219 NC_011761.1 194035 194301 D identified by glimmer; putative; hypothetical protein 194035..194301 Acidithiobacillus ferrooxidans ATCC 23270 7135993 YP_002424726.1 CDS AFE_0218 NC_011761.1 194246 195616 R identified by match to protein family HMM PF01743; polyA polymerase family protein complement(194246..195616) Acidithiobacillus ferrooxidans ATCC 23270 7136533 YP_002424727.1 CDS AFE_0220 NC_011761.1 195622 197364 R identified by match to protein family HMM PF00501; AMP-binding protein complement(195622..197364) Acidithiobacillus ferrooxidans ATCC 23270 7134710 YP_002424728.1 CDS sspA NC_011761.1 197366 197986 R identified by similarity to SP:P05838; match to protein family HMM PF00462; match to protein family HMM PF02798; stringent starvation protein A complement(197366..197986) Acidithiobacillus ferrooxidans ATCC 23270 7136347 YP_002424729.1 CDS AFE_0222 NC_011761.1 197967 198086 D identified by glimmer; putative; hypothetical protein 197967..198086 Acidithiobacillus ferrooxidans ATCC 23270 7134521 YP_002424730.1 CDS lpxC NC_011761.1 198276 199190 D identified by similarity to SP:P47205; match to protein family HMM PF03331; match to protein family HMM TIGR00325; UDP-3-0-acyl N-acetylglucosamine deacetylase 198276..199190 Acidithiobacillus ferrooxidans ATCC 23270 7137238 YP_002424731.1 CDS AFE_0224 NC_011761.1 199584 199679 D identified by glimmer; putative; hypothetical protein 199584..199679 Acidithiobacillus ferrooxidans ATCC 23270 7135801 YP_002424732.1 CDS secA NC_011761.1 199695 202439 D identified by similarity to SP:P10408; match to protein family HMM PF00271; match to protein family HMM PF01043; match to protein family HMM PF02810; match to protein family HMM PF07516; match to protein family HMM PF07517; match to protein family HMM TIGR00963; Preprotein translocase subunit SecA 199695..202439 Acidithiobacillus ferrooxidans ATCC 23270 7135271 YP_002424733.1 CDS argJ NC_011761.1 202449 203675 D identified by similarity to SP:P38434; match to protein family HMM PF01960; match to protein family HMM TIGR00120; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase 202449..203675 Acidithiobacillus ferrooxidans ATCC 23270 7134953 YP_002424734.1 CDS AFE_0227 NC_011761.1 203675 204664 D identified by match to protein family HMM PF00293; match to protein family HMM PF02581; match to protein family HMM TIGR00586; mutator mutT protein/thiamine-phosphate pyrophosphorylase family protein 203675..204664 Acidithiobacillus ferrooxidans ATCC 23270 7135657 YP_002424735.1 CDS AFE_0228 NC_011761.1 204665 205627 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 204665..205627 Acidithiobacillus ferrooxidans ATCC 23270 7135243 YP_002424736.1 CDS AFE_0229 NC_011761.1 205624 206340 D identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 205624..206340 Acidithiobacillus ferrooxidans ATCC 23270 7135078 YP_002424737.1 CDS AFE_0230 NC_011761.1 206406 207416 D identified by match to protein family HMM PF00534; glycoside hydrolase 206406..207416 Acidithiobacillus ferrooxidans ATCC 23270 7134035 YP_002424738.1 CDS AFE_0231 NC_011761.1 207671 209062 D identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase family protein 207671..209062 Acidithiobacillus ferrooxidans ATCC 23270 7136937 YP_002424739.1 CDS AFE_0232 NC_011761.1 209110 210363 D identified by match to protein family HMM PF04932; O-antigen polymerase family protein 209110..210363 Acidithiobacillus ferrooxidans ATCC 23270 7134983 YP_002424740.1 CDS AFE_0233 NC_011761.1 210412 211359 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 210412..211359 Acidithiobacillus ferrooxidans ATCC 23270 7135811 YP_002424741.1 CDS AFE_0234 NC_011761.1 211360 212157 D identified by similarity to SP:Q9XC90; match to protein family HMM PF00535; lipopolysaccharide core biosynthesis glycosyl transferase 211360..212157 Acidithiobacillus ferrooxidans ATCC 23270 7134834 YP_002424742.1 CDS rfaC NC_011761.1 212157 213209 D identified by similarity to SP:P24173; match to protein family HMM PF01075; match to protein family HMM TIGR02193; lipopolysaccharide heptosyltransferase 1 212157..213209 Acidithiobacillus ferrooxidans ATCC 23270 7135039 YP_002424743.1 CDS AFE_0236 NC_011761.1 213206 213886 D identified by similarity to GB:AAK22293.1; hypothetical protein 213206..213886 Acidithiobacillus ferrooxidans ATCC 23270 7135236 YP_002424744.1 CDS kdtA NC_011761.1 213883 215136 D identified by similarity to SP:P23282; match to protein family HMM PF04413; 3-deoxy-D-manno-octulosonic-acid transferase 213883..215136 Acidithiobacillus ferrooxidans ATCC 23270 7135971 YP_002424745.1 CDS AFE_0238 NC_011761.1 215142 216050 R identified by similarity to SP:P24187; match to protein family HMM PF03279; lipid A biosynthesis lauroyl acyltransferase complement(215142..216050) Acidithiobacillus ferrooxidans ATCC 23270 7136273 YP_002424746.1 CDS AFE_0239 NC_011761.1 216151 217308 R identified by similarity to SP:P23256; similarity to SP:Q08432; match to protein family HMM PF00155; class II aminotransferase complement(216151..217308) Acidithiobacillus ferrooxidans ATCC 23270 7134451 YP_002424747.1 CDS AFE_0240 NC_011761.1 217305 219413 R identified by similarity to GB:CAD86313.1; match to protein family HMM PF03781; match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein complement(217305..219413) Acidithiobacillus ferrooxidans ATCC 23270 7134341 YP_002424748.1 CDS AFE_0241 NC_011761.1 219457 219972 R identified by match to protein family HMM PF00588; match to protein family HMM TIGR00185; TrmH family RNA methyltransferase complement(219457..219972) Acidithiobacillus ferrooxidans ATCC 23270 7136711 YP_002424749.1 CDS comF NC_011761.1 219983 220774 R identified by similarity to SP:P31773; competence protein complement(219983..220774) Acidithiobacillus ferrooxidans ATCC 23270 7134025 YP_002424750.1 CDS bioF NC_011761.1 220808 221977 D identified by similarity to SP:P12998; match to protein family HMM PF00155; match to protein family HMM TIGR00858; 8-amino-7-oxononanoate synthase 220808..221977 Acidithiobacillus ferrooxidans ATCC 23270 7136816 YP_002424751.1 CDS bioH NC_011761.1 221974 222738 D identified by similarity to SP:P13001; match to protein family HMM PF00561; match to protein family HMM TIGR01738; bioH protein 221974..222738 Acidithiobacillus ferrooxidans ATCC 23270 7135948 YP_002424752.1 CDS bioC NC_011761.1 222735 223613 D identified by similarity to SP:P12999; match to protein family HMM PF02828; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR02072; biotin synthesis protein BioC 222735..223613 Acidithiobacillus ferrooxidans ATCC 23270 7134915 YP_002424753.1 CDS bioD-2 NC_011761.1 223610 224314 D identified by match to protein family HMM TIGR00347; dethiobiotin synthetase 223610..224314 Acidithiobacillus ferrooxidans ATCC 23270 7135152 YP_002424754.1 CDS htpX-2 NC_011761.1 224428 225324 D identified by similarity to SP:P23894; match to protein family HMM PF01435; heat shock protein HtpX 224428..225324 Acidithiobacillus ferrooxidans ATCC 23270 7134152 YP_002424755.1 CDS aat NC_011761.1 225371 226096 D identified by similarity to SP:P23885; match to protein family HMM PF03588; match to protein family HMM TIGR00667; leucyl/phenylalanyl-tRNA--protein transferase 225371..226096 Acidithiobacillus ferrooxidans ATCC 23270 7135512 YP_002424756.1 CDS ate NC_011761.1 226099 226809 D identified by match to protein family HMM PF04376; match to protein family HMM PF04377; arginine-tRNA--protein transferase 226099..226809 Acidithiobacillus ferrooxidans ATCC 23270 7134075 YP_002424757.1 CDS AFE_0250 NC_011761.1 226806 227585 D identified by match to protein family HMM PF03649; match to protein family HMM TIGR00245; hypothetical protein 226806..227585 Acidithiobacillus ferrooxidans ATCC 23270 7137258 YP_002424758.1 CDS rnt NC_011761.1 227592 228197 D Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A); ribonuclease T 227592..228197 Acidithiobacillus ferrooxidans ATCC 23270 7135299 YP_002424759.1 CDS AFE_0252 NC_011761.1 228273 229289 D identified by similarity to SP:P37911; match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3- dehydrase reductase 228273..229289 Acidithiobacillus ferrooxidans ATCC 23270 7136691 YP_002424760.1 CDS AFE_0253 NC_011761.1 229352 229720 D hypothetical protein 229352..229720 Acidithiobacillus ferrooxidans ATCC 23270 7136145 YP_002424761.1 CDS AFE_0254 NC_011761.1 230113 231051 R hypothetical protein complement(230113..231051) Acidithiobacillus ferrooxidans ATCC 23270 7136356 YP_002424762.1 CDS AFE_0255 NC_011761.1 231155 231886 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 231155..231886 Acidithiobacillus ferrooxidans ATCC 23270 7135702 YP_002424763.1 CDS argB NC_011761.1 231883 232755 D identified by similarity to SP:P59300; match to protein family HMM PF00696; match to protein family HMM TIGR00761; acetylglutamate kinase 231883..232755 Acidithiobacillus ferrooxidans ATCC 23270 7136689 YP_002424764.1 CDS AFE_0257 NC_011761.1 232838 233851 R identified by match to protein family HMM PF00529; secretion protein, HlyD family complement(232838..233851) Acidithiobacillus ferrooxidans ATCC 23270 7136460 YP_002424765.1 CDS AFE_0258 NC_011761.1 234088 234654 D identified by glimmer; putative; hypothetical protein 234088..234654 Acidithiobacillus ferrooxidans ATCC 23270 7136828 YP_002424766.1 CDS bioB NC_011761.1 234701 235651 R identified by similarity to SP:P12996; match to protein family HMM PF04055; match to protein family HMM PF06968; match to protein family HMM TIGR00433; biotin synthase complement(234701..235651) Acidithiobacillus ferrooxidans ATCC 23270 7135713 YP_002424767.1 CDS AFE_0260 NC_011761.1 235648 235998 R identified by similarity to SP:Q8DCB7; match to protein family HMM PF02594; hypothetical protein complement(235648..235998) Acidithiobacillus ferrooxidans ATCC 23270 7134421 YP_002424768.1 CDS AFE_0261 NC_011761.1 236023 236301 R identified by match to protein family HMM PF02325; hypothetical protein complement(236023..236301) Acidithiobacillus ferrooxidans ATCC 23270 7134258 YP_002424769.1 CDS proC NC_011761.1 236298 237125 R identified by similarity to SP:P22008; match to protein family HMM PF03807; match to protein family HMM TIGR00112; pyrroline-5-carboxylate reductase complement(236298..237125) Acidithiobacillus ferrooxidans ATCC 23270 7136756 YP_002424770.1 CDS AFE_0263 NC_011761.1 237122 237790 R identified by match to protein family HMM PF01168; match to protein family HMM TIGR00044; hypothetical protein complement(237122..237790) Acidithiobacillus ferrooxidans ATCC 23270 7134789 YP_002424771.1 CDS pilT-2 NC_011761.1 237892 238941 D identified by similarity to SP:P24559; match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein PilT 237892..238941 Acidithiobacillus ferrooxidans ATCC 23270 7136041 YP_002424772.1 CDS pilT-1 NC_011761.1 238951 240081 D identified by similarity to GB:AAL37755.1; match to protein family HMM PF00437; match to protein family HMM TIGR01420; twitching motility protein PilT 238951..240081 Acidithiobacillus ferrooxidans ATCC 23270 7136488 YP_002424773.1 CDS AFE_0266 NC_011761.1 240009 241235 D identified by match to protein family HMM PF00535; match to protein family HMM TIGR03469; glycosyl transferase family protein 240009..241235 Acidithiobacillus ferrooxidans ATCC 23270 7137037 YP_002424774.1 CDS sqr NC_011761.1 241295 242422 R identified by similarity to GB:AAF72963.1; match to protein family HMM PF07992; sulfide quinone reductase complement(241295..242422) Acidithiobacillus ferrooxidans ATCC 23270 7135954 YP_002424775.1 CDS AFE_0268 NC_011761.1 242547 243164 R identified by similarity to GB:CAD79002.1; hypothetical protein complement(242547..243164) Acidithiobacillus ferrooxidans ATCC 23270 7135653 YP_002424776.1 CDS AFE_0269 NC_011761.1 243177 243866 R identified by similarity to PIR:S74892; match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(243177..243866) Acidithiobacillus ferrooxidans ATCC 23270 7134263 YP_002424777.1 CDS AFE_0270 NC_011761.1 244007 244708 R identified by match to protein family HMM PF00027; match to protein family HMM PF00325; CarD family transcriptional regulator complement(244007..244708) Acidithiobacillus ferrooxidans ATCC 23270 7135282 YP_002424778.1 CDS trmB NC_011761.1 244705 245388 R identified by similarity to SP:Q87AE9; match to protein family HMM PF02390; match to protein family HMM TIGR00091; tRNA (guanine-N(7)-)-methyltransferase complement(244705..245388) Acidithiobacillus ferrooxidans ATCC 23270 7134929 YP_002424779.1 CDS purE NC_011761.1 245435 245932 D identified by similarity to SP:P12044; match to protein family HMM PF00731; match to protein family HMM TIGR01162; phosphoribosylaminoimidazole carboxylase catalytic subunit 245435..245932 Acidithiobacillus ferrooxidans ATCC 23270 7136075 YP_002424780.1 CDS purK NC_011761.1 245929 247062 D identified by similarity to SP:P12045; match to protein family HMM PF02222; match to protein family HMM TIGR01161; phosphoribosylaminoimidazole carboxylase ATPase subunit 245929..247062 Acidithiobacillus ferrooxidans ATCC 23270 7136968 YP_002424781.1 CDS AFE_0274 NC_011761.1 247096 247632 R identified by similarity to SP:P30018; disulfide bond formation protein B complement(247096..247632) Acidithiobacillus ferrooxidans ATCC 23270 7134718 YP_002424782.1 CDS AFE_0275 NC_011761.1 247605 248216 R identified by similarity to SP:P77202; thiol:disulfide interchange domain-containing protein complement(247605..248216) Acidithiobacillus ferrooxidans ATCC 23270 7135017 YP_002424783.1 CDS AFE_0276 NC_011761.1 248213 249883 R identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase family protein complement(248213..249883) Acidithiobacillus ferrooxidans ATCC 23270 7134122 YP_002424784.1 CDS smpB NC_011761.1 249876 250337 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(249876..250337) Acidithiobacillus ferrooxidans ATCC 23270 7136336 YP_002424785.1 CDS AFE_0278 NC_011761.1 250534 251634 D identified by match to protein family HMM PF00614; phospholipase D 250534..251634 Acidithiobacillus ferrooxidans ATCC 23270 7136331 YP_002424786.1 CDS AFE_0280 NC_011761.1 251644 252129 D identified by match to protein family HMM PF03364; hypothetical protein 251644..252129 Acidithiobacillus ferrooxidans ATCC 23270 7136636 YP_002424787.1 CDS AFE_0279 NC_011761.1 252126 252473 R identified by similarity to GB:AAN70303.1; match to protein family HMM PF04355; lipoprotein, SmpA/OmlA family complement(252126..252473) Acidithiobacillus ferrooxidans ATCC 23270 7137167 YP_002424788.1 CDS fur NC_011761.1 252540 253016 D identified by similarity to SP:P06975; match to protein family HMM PF01475; ferric uptake regulation protein 252540..253016 Acidithiobacillus ferrooxidans ATCC 23270 7137079 YP_002424789.1 CDS proB-3 NC_011761.1 253013 254143 R identified by similarity to SP:P07005; match to protein family HMM PF00696; match to protein family HMM PF01472; match to protein family HMM TIGR01027; glutamate 5-kinase complement(253013..254143) Acidithiobacillus ferrooxidans ATCC 23270 7134902 YP_002424790.1 CDS AFE_0283 NC_011761.1 254140 255264 R identified by match to protein family HMM PF01018; match to protein family HMM PF01926; match to protein family HMM TIGR02729; GTP-binding protein Obg/CgtA complement(254140..255264) Acidithiobacillus ferrooxidans ATCC 23270 7135668 YP_002424791.1 CDS rpmA NC_011761.1 255320 255580 R involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 complement(255320..255580) Acidithiobacillus ferrooxidans ATCC 23270 7136428 YP_002424792.1 CDS rplU NC_011761.1 255592 255903 R identified by similarity to SP:P02422; match to protein family HMM PF00829; match to protein family HMM TIGR00061; 50S ribosomal protein L21 complement(255592..255903) Acidithiobacillus ferrooxidans ATCC 23270 7136265 YP_002424793.1 CDS AFE_0286 NC_011761.1 256086 257636 R identified by match to protein family HMM PF00916; sulfate transporter family protein complement(256086..257636) Acidithiobacillus ferrooxidans ATCC 23270 7134575 YP_002424794.1 CDS AFE_0287 NC_011761.1 257646 258275 R identified by similarity to PIR:AI3279; match to protein family HMM PF00484; carbonic anhydrase complement(257646..258275) Acidithiobacillus ferrooxidans ATCC 23270 7136840 YP_002424795.1 CDS metE NC_011761.1 258443 260797 R catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase complement(258443..260797) Acidithiobacillus ferrooxidans ATCC 23270 7136608 YP_002424796.1 CDS AFE_0290 NC_011761.1 260783 260896 D identified by glimmer; putative; hypothetical protein 260783..260896 Acidithiobacillus ferrooxidans ATCC 23270 7136862 YP_002424797.1 CDS ubiE NC_011761.1 260893 261678 R identified by similarity to SP:P27851; match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR01934; ubiquinone/menaquinone biosynthesis methlytransferase UbiE complement(260893..261678) Acidithiobacillus ferrooxidans ATCC 23270 7136470 YP_002424798.1 CDS AFE_0291 NC_011761.1 261726 262382 R identified by match to protein family HMM PF02798; glutathione S-transferase family protein complement(261726..262382) Acidithiobacillus ferrooxidans ATCC 23270 7137073 YP_002424799.1 CDS metW NC_011761.1 262402 263007 R identified by similarity to GB:AAO58478.1; match to protein family HMM PF07021; match to protein family HMM PF08241; match to protein family HMM TIGR02081; methionine biosynthesis protein MetW complement(262402..263007) Acidithiobacillus ferrooxidans ATCC 23270 7135707 YP_002424800.1 CDS metX NC_011761.1 263004 264155 R identified by similarity to SP:P45131; match to protein family HMM PF00561; match to protein family HMM TIGR01392; homoserine O-acetyltransferase complement(263004..264155) Acidithiobacillus ferrooxidans ATCC 23270 7135351 YP_002424801.1 CDS AFE_0294 NC_011761.1 264373 265125 D identified by glimmer; putative; hypothetical protein 264373..265125 Acidithiobacillus ferrooxidans ATCC 23270 7134028 YP_002424802.1 CDS glyA NC_011761.1 265259 266503 D catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase 265259..266503 Acidithiobacillus ferrooxidans ATCC 23270 7136603 YP_002424803.1 CDS nrdR NC_011761.1 266510 267001 D identified by match to protein family HMM PF03477; match to protein family HMM TIGR00244; transcriptional regulator NrdR 266510..267001 Acidithiobacillus ferrooxidans ATCC 23270 7137034 YP_002424804.1 CDS ribD NC_011761.1 266991 268091 D identified by similarity to SP:P25539; match to protein family HMM PF00383; match to protein family HMM PF01872; match to protein family HMM TIGR00227; match to protein family HMM TIGR00326; riboflavin biosynthesis protein RibD 266991..268091 Acidithiobacillus ferrooxidans ATCC 23270 7134794 YP_002424805.1 CDS ribE NC_011761.1 268095 268751 D identified by similarity to SP:P50854; match to protein family HMM PF00677; match to protein family HMM TIGR00187; riboflavin synthase subunit alpha 268095..268751 Acidithiobacillus ferrooxidans ATCC 23270 7134773 YP_002424806.1 CDS ribBA NC_011761.1 268748 269881 D identified by similarity to SP:P17620; match to protein family HMM PF00925; match to protein family HMM PF00926; match to protein family HMM TIGR00506; 3,4-dihydroxy-2-butanone 4-phosphate synthase 268748..269881 Acidithiobacillus ferrooxidans ATCC 23270 7134022 YP_002424807.1 CDS ribH NC_011761.1 269878 270342 D RibE; 6,7-diimethyl-8-ribityllumazine synthase; DMRL synthase; lumazine synthase; beta subunit of riboflavin synthase; condenses 5-amino-6-(1'-D)-ribityl-amino-2,4(1H,3H)-pyrimidinedione with L-3,4-dihydrohy-2-butanone-4-phosphate to generate 6,6-dimethyl-8-lumazine (DMRL); riboflavin synthase then uses 2 molecules of DMRL to produce riboflavin (vitamin B12); involved in the last steps of riboflavin biosynthesis; forms a 60mer (icosahedral shell) in both Bacillus subtilis and Escherichia coli; in Bacillus subtilis this 60mer is associated with the riboflavin synthase subunit (alpha) while in Escherichia coli it is not; 6,7-dimethyl-8-ribityllumazine synthase 269878..270342 Acidithiobacillus ferrooxidans ATCC 23270 7136207 YP_002424808.1 CDS nusB NC_011761.1 270353 270796 D identified by match to protein family HMM PF01029; match to protein family HMM TIGR01951; transcription antitermination factor NusB 270353..270796 Acidithiobacillus ferrooxidans ATCC 23270 7136226 YP_002424809.1 CDS AFE_0302 NC_011761.1 270924 271205 D identified by similarity to PIR:B42680; hypothetical protein 270924..271205 Acidithiobacillus ferrooxidans ATCC 23270 7136710 YP_002424810.1 CDS AFE_0303 NC_011761.1 271364 271936 D identified by match to protein family HMM PF08238; hypothetical protein 271364..271936 Acidithiobacillus ferrooxidans ATCC 23270 7137286 YP_002424811.1 CDS AFE_0304 NC_011761.1 271954 272307 R identified by similarity to GB:AAM24168.1; hypothetical protein complement(271954..272307) Acidithiobacillus ferrooxidans ATCC 23270 7134310 YP_002424812.1 CDS ubiB NC_011761.1 272362 274044 R identified by match to protein family HMM PF03109; match to protein family HMM TIGR01982; 2-polyprenylphenol 6-hydroxylase complement(272362..274044) Acidithiobacillus ferrooxidans ATCC 23270 7134802 YP_002424813.1 CDS AFE_0306 NC_011761.1 274144 274797 R identified by similarity to SP:Q05146; match to protein family HMM PF00691; OmpA family protein complement(274144..274797) Acidithiobacillus ferrooxidans ATCC 23270 7134634 YP_002424814.1 CDS AFE_0307 NC_011761.1 274789 274986 D identified by glimmer; putative; hypothetical protein 274789..274986 Acidithiobacillus ferrooxidans ATCC 23270 7135815 YP_002424815.1 CDS tuf-2 NC_011761.1 275372 276562 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 275372..276562 Acidithiobacillus ferrooxidans ATCC 23270 7136011 YP_002424816.1 CDS secE NC_011761.1 276713 277063 D identified by similarity to SP:P16920; match to protein family HMM PF00584; match to protein family HMM TIGR00964; Preprotein translocase subunit SecE 276713..277063 Acidithiobacillus ferrooxidans ATCC 23270 7136030 YP_002424817.1 CDS nusG NC_011761.1 277064 277597 D identified by match to protein family HMM PF00467; match to protein family HMM PF02357; match to protein family HMM TIGR00922; transcription termination/antitermination factor NusG 277064..277597 Acidithiobacillus ferrooxidans ATCC 23270 7135933 YP_002424818.1 CDS rplK NC_011761.1 277651 278079 D binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 277651..278079 Acidithiobacillus ferrooxidans ATCC 23270 7136354 YP_002424819.1 CDS rplA NC_011761.1 278083 278775 D in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 278083..278775 Acidithiobacillus ferrooxidans ATCC 23270 7134587 YP_002424820.1 CDS rplJ NC_011761.1 278919 279440 D binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 278919..279440 Acidithiobacillus ferrooxidans ATCC 23270 7135724 YP_002424821.1 CDS rplL NC_011761.1 279470 279856 D present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 279470..279856 Acidithiobacillus ferrooxidans ATCC 23270 7134352 YP_002424822.1 CDS AFE_0319 NC_011761.1 279879 279977 R identified by glimmer; putative; hypothetical protein complement(279879..279977) Acidithiobacillus ferrooxidans ATCC 23270 7134664 YP_002424823.1 CDS rpoB NC_011761.1 279980 284068 D identified by match to protein family HMM PF00562; match to protein family HMM PF04560; match to protein family HMM PF04561; match to protein family HMM PF04563; match to protein family HMM PF04565; match to protein family HMM TIGR02013; DNA-directed RNA polymerase subunit beta 279980..284068 Acidithiobacillus ferrooxidans ATCC 23270 7134317 YP_002424824.1 CDS rpoC NC_011761.1 284102 288256 D identified by similarity to SP:P00577; match to protein family HMM PF00623; match to protein family HMM PF04983; match to protein family HMM PF04997; match to protein family HMM PF04998; match to protein family HMM PF05000; match to protein family HMM TIGR02386; DNA-directed RNA polymerase subunit beta' 284102..288256 Acidithiobacillus ferrooxidans ATCC 23270 7137209 YP_002424825.1 CDS rpsL NC_011761.1 288366 288737 D interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 288366..288737 Acidithiobacillus ferrooxidans ATCC 23270 7136849 YP_002424826.1 CDS rpsG NC_011761.1 288764 289234 D binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 288764..289234 Acidithiobacillus ferrooxidans ATCC 23270 7135572 YP_002424827.1 CDS fusA NC_011761.1 289267 291366 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 289267..291366 Acidithiobacillus ferrooxidans ATCC 23270 7136511 YP_002424828.1 CDS tuf-1 NC_011761.1 291387 292577 D EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu 291387..292577 Acidithiobacillus ferrooxidans ATCC 23270 7136844 YP_002424829.1 CDS rpsJ NC_011761.1 292577 292885 D NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 292577..292885 Acidithiobacillus ferrooxidans ATCC 23270 7134043 YP_002424830.1 CDS rplC NC_011761.1 292903 293535 D binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 292903..293535 Acidithiobacillus ferrooxidans ATCC 23270 7135321 YP_002424831.1 CDS rplD NC_011761.1 293546 294163 D L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 293546..294163 Acidithiobacillus ferrooxidans ATCC 23270 7136523 YP_002424832.1 CDS rplW NC_011761.1 294160 294453 D binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 294160..294453 Acidithiobacillus ferrooxidans ATCC 23270 7135304 YP_002424833.1 CDS rplB NC_011761.1 294470 295294 D one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 294470..295294 Acidithiobacillus ferrooxidans ATCC 23270 7136550 YP_002424834.1 CDS rpsS NC_011761.1 295313 295588 D protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 295313..295588 Acidithiobacillus ferrooxidans ATCC 23270 7135228 YP_002424835.1 CDS rplV NC_011761.1 295600 295935 D binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 295600..295935 Acidithiobacillus ferrooxidans ATCC 23270 7134161 YP_002424836.1 CDS rpsC NC_011761.1 295919 296605 D identified by similarity to SP:P02352; match to protein family HMM PF00189; match to protein family HMM PF00417; match to protein family HMM PF07650; match to protein family HMM TIGR01009; 30S ribosomal protein S3 295919..296605 Acidithiobacillus ferrooxidans ATCC 23270 7135025 YP_002424837.1 CDS rplP NC_011761.1 296618 297034 D located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 296618..297034 Acidithiobacillus ferrooxidans ATCC 23270 7136381 YP_002424838.1 CDS rpmC NC_011761.1 297031 297228 D one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 297031..297228 Acidithiobacillus ferrooxidans ATCC 23270 7136296 YP_002424839.1 CDS rpS17 NC_011761.1 297225 297500 D identified by similarity to SP:P02373; match to protein family HMM PF00366; 30S ribosomal protein S17 297225..297500 Acidithiobacillus ferrooxidans ATCC 23270 7135965 YP_002424840.1 CDS rplN NC_011761.1 297497 297865 D binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 297497..297865 Acidithiobacillus ferrooxidans ATCC 23270 7136301 YP_002424841.1 CDS rplX NC_011761.1 297875 298195 D assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 297875..298195 Acidithiobacillus ferrooxidans ATCC 23270 7135015 YP_002424842.1 CDS rplE NC_011761.1 298210 298752 D part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 298210..298752 Acidithiobacillus ferrooxidans ATCC 23270 7134623 YP_002424843.1 CDS rpsN NC_011761.1 298766 298951 D located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group appear to contain the zinc-binding motif; 30S ribosomal protein S14 298766..298951 Acidithiobacillus ferrooxidans ATCC 23270 7135898 YP_002424844.1 CDS rpsH NC_011761.1 298961 299356 D binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 298961..299356 Acidithiobacillus ferrooxidans ATCC 23270 7136548 YP_002424845.1 CDS rplF NC_011761.1 299370 299894 D ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 299370..299894 Acidithiobacillus ferrooxidans ATCC 23270 7136555 YP_002424846.1 CDS rplR NC_011761.1 299913 300266 D binds 5S rRNA along with protein L5 and L25; 50S ribosomal protein L18 299913..300266 Acidithiobacillus ferrooxidans ATCC 23270 7136684 YP_002424847.1 CDS rpsE NC_011761.1 300279 300809 D located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 300279..300809 Acidithiobacillus ferrooxidans ATCC 23270 7136427 YP_002424848.1 CDS rpmD NC_011761.1 300802 300987 D L30 binds domain II of the 23S rRNA and the 5S rRNA; similar to eukaryotic protein L7; 50S ribosomal protein L30 300802..300987 Acidithiobacillus ferrooxidans ATCC 23270 7136151 YP_002424849.1 CDS rplO NC_011761.1 300984 301421 D late assembly protein; 50S ribosomal protein L15 300984..301421 Acidithiobacillus ferrooxidans ATCC 23270 7135101 YP_002424850.1 CDS secY NC_011761.1 301421 302752 D identified by similarity to SP:P03844; match to protein family HMM PF00344; match to protein family HMM TIGR00967; preprotein translocase subunit SecY 301421..302752 Acidithiobacillus ferrooxidans ATCC 23270 7134569 YP_002424851.1 CDS adk NC_011761.1 302755 303411 D identified by similarity to SP:P27142; match to protein family HMM PF00406; match to protein family HMM PF05191; match to protein family HMM TIGR01351; adenylate kinase 302755..303411 Acidithiobacillus ferrooxidans ATCC 23270 7135510 YP_002424852.1 CDS infA NC_011761.1 303412 303630 D identified by similarity to SP:P02998; match to protein family HMM PF00575; match to protein family HMM PF01176; match to protein family HMM TIGR00008; translation initiation factor IF-1 303412..303630 Acidithiobacillus ferrooxidans ATCC 23270 7134183 YP_002424853.1 CDS rpmJ NC_011761.1 303639 303752 D smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group have the motif; 50S ribosomal protein L36 303639..303752 Acidithiobacillus ferrooxidans ATCC 23270 7137298 YP_002424854.1 CDS rpsM NC_011761.1 303816 304172 D located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 303816..304172 Acidithiobacillus ferrooxidans ATCC 23270 7135053 YP_002424855.1 CDS rpsK NC_011761.1 304190 304585 D identified by similarity to SP:P02366; match to protein family HMM PF00411; 30S ribosomal protein S11 304190..304585 Acidithiobacillus ferrooxidans ATCC 23270 7136875 YP_002424856.1 CDS rpsD NC_011761.1 304606 305232 D identified by similarity to SP:P02354; match to protein family HMM PF00163; match to protein family HMM PF01479; match to protein family HMM TIGR01017; 30S ribosomal protein S4 304606..305232 Acidithiobacillus ferrooxidans ATCC 23270 7136446 YP_002424857.1 CDS rpoA NC_011761.1 305255 306274 D catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha 305255..306274 Acidithiobacillus ferrooxidans ATCC 23270 7136880 YP_002424858.1 CDS rplQ NC_011761.1 306305 306679 D is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 306305..306679 Acidithiobacillus ferrooxidans ATCC 23270 7135307 YP_002424859.1 CDS dut NC_011761.1 306843 307295 R identified by similarity to SP:P06968; match to protein family HMM PF00692; match to protein family HMM TIGR00576; deoxyuridine 5`-triphosphate nucleotidohydrolase complement(306843..307295) Acidithiobacillus ferrooxidans ATCC 23270 7137151 YP_002424860.1 CDS coaBC NC_011761.1 307288 308544 R identified by match to protein family HMM PF02441; match to protein family HMM PF04127; match to protein family HMM TIGR00521; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase complement(307288..308544) Acidithiobacillus ferrooxidans ATCC 23270 7134848 YP_002424861.1 CDS radC NC_011761.1 308577 309251 D identified by match to protein family HMM PF04002; match to protein family HMM TIGR00608; DNA repair protein RadC 308577..309251 Acidithiobacillus ferrooxidans ATCC 23270 7134082 YP_002424862.1 CDS dgkA NC_011761.1 309248 309613 D identified by similarity to SP:P19638; match to protein family HMM PF01219; diacylglycerol kinase 309248..309613 Acidithiobacillus ferrooxidans ATCC 23270 7136757 YP_002424863.1 CDS AFE_0360 NC_011761.1 309617 310363 D identified by match to protein family HMM PF01569; PAP2 family protein 309617..310363 Acidithiobacillus ferrooxidans ATCC 23270 7134535 YP_002424864.1 CDS AFE_0361 NC_011761.1 310347 310886 D identified by glimmer; putative; hypothetical protein 310347..310886 Acidithiobacillus ferrooxidans ATCC 23270 7135111 YP_002424865.1 CDS AFE_0362 NC_011761.1 310910 311266 D identified by similarity to GB:BAB50383.1; hypothetical protein 310910..311266 Acidithiobacillus ferrooxidans ATCC 23270 7136457 YP_002424866.1 CDS AFE_0363 NC_011761.1 311378 311755 D identified by similarity to PIR:C70335; hypothetical protein 311378..311755 Acidithiobacillus ferrooxidans ATCC 23270 7135602 YP_002424867.1 CDS AFE_0364 NC_011761.1 311727 312311 D identified by similarity to SP:P37472; match to protein family HMM PF00156; hypoxanthine-guanine phosphoribosyltransferase 311727..312311 Acidithiobacillus ferrooxidans ATCC 23270 7134165 YP_002424868.1 CDS mtaP NC_011761.1 312311 313123 D identified by match to protein family HMM PF00896; match to protein family HMM TIGR01694; methylthioadenosine phosphorylase 312311..313123 Acidithiobacillus ferrooxidans ATCC 23270 7134830 YP_002424869.1 CDS gor NC_011761.1 313146 314495 R identified by similarity to SP:P06715; match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR01421; glutathione reductase complement(313146..314495) Acidithiobacillus ferrooxidans ATCC 23270 7135099 YP_002424870.1 CDS AFE_0367 NC_011761.1 314585 315328 R identified by match to protein family HMM PF00462; match to protein family HMM PF00578; match to protein family HMM PF08534; match to protein family HMM TIGR02190; AhpC/TSA family/glutaredoxin domain-containing protein complement(314585..315328) Acidithiobacillus ferrooxidans ATCC 23270 7134248 YP_002424871.1 CDS serB NC_011761.1 315464 316447 R identified by similarity to SP:P06862; match to protein family HMM PF00702; match to protein family HMM PF08282; match to protein family HMM TIGR00338; match to protein family HMM TIGR01488; phosphoserine phosphatase complement(315464..316447) Acidithiobacillus ferrooxidans ATCC 23270 7137310 YP_002424872.1 CDS mfd NC_011761.1 316579 320028 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF02559; match to protein family HMM PF03461; match to protein family HMM PF04851; match to protein family HMM TIGR00580; transcription-repair coupling factor complement(316579..320028) Acidithiobacillus ferrooxidans ATCC 23270 7134439 YP_002424873.1 CDS ispD NC_011761.1 320180 320893 D identified by similarity to SP:Q46893; match to protein family HMM PF01128; match to protein family HMM TIGR00453; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 320180..320893 Acidithiobacillus ferrooxidans ATCC 23270 7134540 YP_002424874.1 CDS ispF NC_011761.1 320904 321377 D identified by similarity to SP:P36663; match to protein family HMM PF02542; match to protein family HMM TIGR00151; 2-C-methyl-D-erythritol 2,4-cyclo diphosphate synthase 320904..321377 Acidithiobacillus ferrooxidans ATCC 23270 7136819 YP_002424875.1 CDS truD NC_011761.1 321370 322458 D identified by similarity to SP:Q57261; match to protein family HMM PF01142; match to protein family HMM TIGR00094; tRNA pseudouridine synthase D 321370..322458 Acidithiobacillus ferrooxidans ATCC 23270 7135158 YP_002424876.1 CDS AFE_0373 NC_011761.1 322534 323010 D identified by match to protein family HMM PF00376; match to protein family HMM PF09278; MerR family transcriptional regulator 322534..323010 Acidithiobacillus ferrooxidans ATCC 23270 7136370 YP_002424877.1 CDS AFE_0374 NC_011761.1 323078 323656 R identified by match to protein family HMM PF01713; Smr domain-containing protein complement(323078..323656) Acidithiobacillus ferrooxidans ATCC 23270 7134655 YP_002424878.1 CDS trxB NC_011761.1 323660 324631 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01292; thioredoxin-disulfide reductase complement(323660..324631) Acidithiobacillus ferrooxidans ATCC 23270 7136568 YP_002424879.1 CDS AFE_0377 NC_011761.1 327167 327859 D identified by similarity to SP:P39178; match to protein family HMM PF03548; match to protein family HMM TIGR00547; outer membrane lipoprotein carrier protein LolA 327167..327859 Acidithiobacillus ferrooxidans ATCC 23270 7134885 YP_002424880.1 CDS AFE_0378 NC_011761.1 327878 328948 D identified by match to protein family HMM PF03349; outer membrane protein transport protein, OMPP1/FadL/TodX family 327878..328948 Acidithiobacillus ferrooxidans ATCC 23270 7134790 YP_002424881.1 CDS AFE_0379 NC_011761.1 328976 330304 D identified by match to protein family HMM PF00004; match to protein family HMM PF01078; match to protein family HMM PF07728; AAA ATPase 328976..330304 Acidithiobacillus ferrooxidans ATCC 23270 7136632 YP_002424882.1 CDS serS NC_011761.1 330297 331562 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 330297..331562 Acidithiobacillus ferrooxidans ATCC 23270 7136933 YP_002424883.1 CDS AFE_0381 NC_011761.1 331566 331799 D identified by similarity to GB:CAD84097.1; hypothetical protein 331566..331799 Acidithiobacillus ferrooxidans ATCC 23270 7136420 YP_002424884.1 CDS AFE_0382 NC_011761.1 331796 332839 D identified by match to protein family HMM PF01476; match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 331796..332839 Acidithiobacillus ferrooxidans ATCC 23270 7136343 YP_002424885.1 CDS AFE_0389 NC_011761.1 338414 338866 D identified by similarity to SP:Q9HV53; match to protein family HMM PF02576; lipoprotein 338414..338866 Acidithiobacillus ferrooxidans ATCC 23270 7134948 YP_002424886.1 CDS nusA NC_011761.1 338898 340379 D identified by match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF08529; match to protein family HMM TIGR01953; match to protein family HMM TIGR01954; transcription termination factor NusA 338898..340379 Acidithiobacillus ferrooxidans ATCC 23270 7136080 YP_002424887.1 CDS infB NC_011761.1 340438 343065 D identified by similarity to SP:P02995; match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM PF04760; match to protein family HMM PF08364; match to protein family HMM PF08477; match to protein family HMM TIGR00231; match to protein family HMM TIGR00487; translation initiation factor IF-2 340438..343065 Acidithiobacillus ferrooxidans ATCC 23270 7134685 YP_002424888.1 CDS rbfA NC_011761.1 343073 343459 D identified by match to protein family HMM PF02033; ribosome-binding factor A 343073..343459 Acidithiobacillus ferrooxidans ATCC 23270 7134611 YP_002424889.1 CDS truB NC_011761.1 343456 344337 D identified by similarity to SP:P09171; match to protein family HMM PF01509; match to protein family HMM PF09157; match to protein family HMM TIGR00431; tRNA pseudouridine synthase B 343456..344337 Acidithiobacillus ferrooxidans ATCC 23270 7134066 YP_002424890.1 CDS rpsO NC_011761.1 344376 344645 D primary rRNA binding protein; helps nucleate assembly of 30S; binds directly to the 16S rRNA and an intersubunit bridge to the 23S rRNA; autoregulates translation through interactions with the mRNA leader sequence; 30S ribosomal protein S15 344376..344645 Acidithiobacillus ferrooxidans ATCC 23270 7137124 YP_002424891.1 CDS pnp NC_011761.1 344662 346734 D identified by similarity to SP:P05055; match to protein family HMM PF00013; match to protein family HMM PF00575; match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM PF03726; match to protein family HMM PF07650; polyribonucleotide nucleotidyltransferase 344662..346734 Acidithiobacillus ferrooxidans ATCC 23270 7136855 YP_002424892.1 CDS AFE_0396 NC_011761.1 346789 348063 D identified by match to protein family HMM PF00675; match to protein family HMM PF05193; M16 family peptidase 346789..348063 Acidithiobacillus ferrooxidans ATCC 23270 7134266 YP_002424893.1 CDS AFE_0397 NC_011761.1 348066 348818 R identified by similarity to SP:Q47677; match to protein family HMM PF00753; match to protein family HMM TIGR03413; hydroxyacylglutathione hydrolase complement(348066..348818) Acidithiobacillus ferrooxidans ATCC 23270 7134376 YP_002424894.1 CDS AFE_0398 NC_011761.1 348927 349724 D identified by similarity to GB:CAD15216.1; hypothetical protein 348927..349724 Acidithiobacillus ferrooxidans ATCC 23270 7135148 YP_002424895.1 CDS rnhA-2 NC_011761.1 349706 350182 D identified by match to protein family HMM PF00075; ribonuclease HI 349706..350182 Acidithiobacillus ferrooxidans ATCC 23270 7135490 YP_002424896.1 CDS dnaQ NC_011761.1 350173 350919 D identified by similarity to SP:P03007; match to protein family HMM PF00929; match to protein family HMM TIGR00573; match to protein family HMM TIGR01406; DNA polymerase III subunit epsilon 350173..350919 Acidithiobacillus ferrooxidans ATCC 23270 7136404 YP_002424897.1 CDS AFE_0401 NC_011761.1 350924 351334 R identified by match to protein family HMM PF03259; roadblock/LC7 domain-containing protein complement(350924..351334) Acidithiobacillus ferrooxidans ATCC 23270 7137188 YP_002424898.1 CDS gloA NC_011761.1 351426 351833 R identified by match to protein family HMM PF00903; match to protein family HMM TIGR00068; lactoylglutathione lyase complement(351426..351833) Acidithiobacillus ferrooxidans ATCC 23270 7136293 YP_002424899.1 CDS AFE_0403 NC_011761.1 351844 352161 R identified by similarity to GB:AAN48171.1; hypothetical protein complement(351844..352161) Acidithiobacillus ferrooxidans ATCC 23270 7134707 YP_002424900.1 CDS argG NC_011761.1 352166 353365 R identified by similarity to SP:Q9HY84; match to protein family HMM PF00764; match to protein family HMM TIGR00032; argininosuccinate synthase complement(352166..353365) Acidithiobacillus ferrooxidans ATCC 23270 7136057 YP_002424901.1 CDS argF NC_011761.1 353369 354304 R identified by similarity to SP:P18186; match to protein family HMM PF00185; match to protein family HMM PF02729; match to protein family HMM TIGR00658; ornithine carbamoyltransferase complement(353369..354304) Acidithiobacillus ferrooxidans ATCC 23270 7137089 YP_002424902.1 CDS argD NC_011761.1 354301 355467 R identified by similarity to SP:P54752; match to protein family HMM PF00202; match to protein family HMM TIGR00707; acetylornithine aminotransferase complement(354301..355467) Acidithiobacillus ferrooxidans ATCC 23270 7134913 YP_002424903.1 CDS AFE_0407 NC_011761.1 355467 356693 R identified by similarity to SP:P41403; match to protein family HMM PF00696; match to protein family HMM PF01842; match to protein family HMM TIGR00656; match to protein family HMM TIGR00657; aspartate kinase complement(355467..356693) Acidithiobacillus ferrooxidans ATCC 23270 7135517 YP_002424904.1 CDS AFE_0408 NC_011761.1 356801 357121 R identified by glimmer; putative; hypothetical protein complement(356801..357121) Acidithiobacillus ferrooxidans ATCC 23270 7136449 YP_002424905.1 CDS AFE_0409 NC_011761.1 357166 357651 R identified by similarity to GB:AAN79743.1; match to protein family HMM PF08238; hypothetical protein complement(357166..357651) Acidithiobacillus ferrooxidans ATCC 23270 7137278 YP_002424906.1 CDS AFE_0410 NC_011761.1 357635 357793 R identified by glimmer; putative; hypothetical protein complement(357635..357793) Acidithiobacillus ferrooxidans ATCC 23270 7134141 YP_002424907.1 CDS AFE_0411 NC_011761.1 357771 358016 R identified by glimmer; putative; hypothetical protein complement(357771..358016) Acidithiobacillus ferrooxidans ATCC 23270 7134021 YP_002424908.1 CDS AFE_0412 NC_011761.1 358052 358228 R identified by match to protein family HMM PF06769; match to protein family HMM TIGR02116; Txe/YoeB family addiction module toxin complement(358052..358228) Acidithiobacillus ferrooxidans ATCC 23270 7135744 YP_002424909.1 CDS AFE_0413 NC_011761.1 358292 358669 R identified by match to protein family HMM PF01850; PIN domain-containing protein complement(358292..358669) Acidithiobacillus ferrooxidans ATCC 23270 7134445 YP_002424910.1 CDS AFE_0414 NC_011761.1 358675 358920 R identified by similarity to SP:Q06253; prevent host death protein complement(358675..358920) Acidithiobacillus ferrooxidans ATCC 23270 7137009 YP_002424911.1 CDS AFE_0415 NC_011761.1 359224 359421 D identified by glimmer; putative; hypothetical protein 359224..359421 Acidithiobacillus ferrooxidans ATCC 23270 7136258 YP_002424912.1 CDS AFE_0416 NC_011761.1 359479 360015 D identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; pilin 359479..360015 Acidithiobacillus ferrooxidans ATCC 23270 7136421 YP_002424913.1 CDS AFE_0417 NC_011761.1 360329 360574 D identified by glimmer; putative; hypothetical protein 360329..360574 Acidithiobacillus ferrooxidans ATCC 23270 7135285 YP_002424914.1 CDS AFE_0418 NC_011761.1 360588 360803 D identified by glimmer; putative; hypothetical protein 360588..360803 Acidithiobacillus ferrooxidans ATCC 23270 7135309 YP_002424915.1 CDS tal NC_011761.1 360910 362001 D identified by match to protein family HMM PF00923; match to protein family HMM TIGR00876; transaldolase 360910..362001 Acidithiobacillus ferrooxidans ATCC 23270 7137164 YP_002424916.1 CDS fabI NC_011761.1 362035 362808 R identified by similarity to SP:P29132; match to protein family HMM PF00106; enoyl-(acyl-carrier-protein) reductase complement(362035..362808) Acidithiobacillus ferrooxidans ATCC 23270 7135266 YP_002424917.1 CDS mltD NC_011761.1 362833 364671 R identified by similarity to SP:P23931; match to protein family HMM PF01464; match to protein family HMM PF01476; membrane-bound lytic murein transglycosylase D complement(362833..364671) Acidithiobacillus ferrooxidans ATCC 23270 7137171 YP_002424918.1 CDS gltX NC_011761.1 364896 366296 D Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase 364896..366296 Acidithiobacillus ferrooxidans ATCC 23270 7137263 YP_002424919.1 CDS AFE_0423 NC_011761.1 366408 368345 D Catalyzes the conversion of citrate to isocitrate; aconitate hydratase 366408..368345 Acidithiobacillus ferrooxidans ATCC 23270 7136895 YP_002424920.1 CDS icd NC_011761.1 368348 369634 D identified by match to protein family HMM PF00180; match to protein family HMM TIGR00183; isocitrate dehydrogenase 368348..369634 Acidithiobacillus ferrooxidans ATCC 23270 7136130 YP_002424921.1 CDS sucC NC_011761.1 369644 370807 D identified by similarity to SP:P07460; match to protein family HMM PF00549; match to protein family HMM PF08442; match to protein family HMM TIGR01016; succinyl-CoA synthetase subunit beta 369644..370807 Acidithiobacillus ferrooxidans ATCC 23270 7135976 YP_002424922.1 CDS AFE_0426 NC_011761.1 370809 371153 D hypothetical protein 370809..371153 Acidithiobacillus ferrooxidans ATCC 23270 7135910 YP_002424923.1 CDS sucD NC_011761.1 371150 372022 D identified by similarity to SP:P07459; match to protein family HMM PF00549; match to protein family HMM PF02629; match to protein family HMM TIGR01019; succinyl-CoA synthetase subunit alpha 371150..372022 Acidithiobacillus ferrooxidans ATCC 23270 7136213 YP_002424924.1 CDS nadE NC_011761.1 372022 373671 D identified by similarity to SP:Q03638; match to protein family HMM PF00795; match to protein family HMM PF02540; match to protein family HMM TIGR00552; glutamine-dependent NAD+ synthetase 372022..373671 Acidithiobacillus ferrooxidans ATCC 23270 7134052 YP_002424925.1 CDS glnB-2 NC_011761.1 373668 374006 D identified by similarity to SP:P05826; match to protein family HMM PF00543; nitrogen regulatory protein P-II 1 373668..374006 Acidithiobacillus ferrooxidans ATCC 23270 7134459 YP_002424926.1 CDS AFE_0430 NC_011761.1 374040 374795 R identified by similarity to SP:Q50985; match to protein family HMM PF00515; match to protein family HMM TIGR03302; competence lipoprotein ComL complement(374040..374795) Acidithiobacillus ferrooxidans ATCC 23270 7135885 YP_002424927.1 CDS rluD NC_011761.1 374824 375783 D identified by similarity to SP:P33643; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase D 374824..375783 Acidithiobacillus ferrooxidans ATCC 23270 7136318 YP_002424928.1 CDS AFE_0432 NC_011761.1 375800 376525 D identified by similarity to GB:AAQ59864.1; match to protein family HMM PF02578; match to protein family HMM TIGR00726; hypothetical protein 375800..376525 Acidithiobacillus ferrooxidans ATCC 23270 7136363 YP_002424929.1 CDS AFE_0433 NC_011761.1 376527 377075 D identified by match to protein family HMM PF03079; match to protein family HMM PF07883; dioxygenase, ARD/ARD' family 376527..377075 Acidithiobacillus ferrooxidans ATCC 23270 7136221 YP_002424930.1 CDS ccbL2 NC_011761.1 377072 378244 D identified by match to protein family HMM PF00016; ribulose bisphosphate carboxylase, large subunit 2 377072..378244 Acidithiobacillus ferrooxidans ATCC 23270 7134884 YP_002424931.1 CDS AFE_0435 NC_011761.1 378244 378897 D identified by match to protein family HMM PF00702; HAD superfamily hydrolase 378244..378897 Acidithiobacillus ferrooxidans ATCC 23270 7135229 YP_002424932.1 CDS AFE_0436 NC_011761.1 378887 379507 D identified by match to protein family HMM PF00596; match to protein family HMM TIGR03328; aldolase, class II 378887..379507 Acidithiobacillus ferrooxidans ATCC 23270 7136180 YP_002424933.1 CDS AFE_0437 NC_011761.1 379509 380030 D identified by match to protein family HMM PF01842; ACT domain-containing protein 379509..380030 Acidithiobacillus ferrooxidans ATCC 23270 7134372 YP_002424934.1 CDS def-1 NC_011761.1 380030 380533 D identified by similarity to SP:P27251; match to protein family HMM PF01327; match to protein family HMM TIGR00079; polypeptide deformylase 380030..380533 Acidithiobacillus ferrooxidans ATCC 23270 7135199 YP_002424935.1 CDS AFE_0439 NC_011761.1 380607 382193 R identified by match to protein family HMM PF00324; amino acid permease family protein complement(380607..382193) Acidithiobacillus ferrooxidans ATCC 23270 7137044 YP_002424936.1 CDS AFE_0440 NC_011761.1 382178 382294 R identified by glimmer; putative; hypothetical protein complement(382178..382294) Acidithiobacillus ferrooxidans ATCC 23270 7135371 YP_002424937.1 CDS rfbB NC_011761.1 382357 383496 R identified by similarity to SP:P55295; match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01181; dTDP-glucose 4,6-dehydratase complement(382357..383496) Acidithiobacillus ferrooxidans ATCC 23270 7135928 YP_002424938.1 CDS rfbD NC_011761.1 383516 384385 R identified by similarity to GB:AAO88915.1; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM TIGR01214; dTDP-4-dehydrorhamnose reductase complement(383516..384385) Acidithiobacillus ferrooxidans ATCC 23270 7135137 YP_002424939.1 CDS AFE_0443 NC_011761.1 384415 384921 R identified by glimmer; putative; hypothetical protein complement(384415..384921) Acidithiobacillus ferrooxidans ATCC 23270 7135557 YP_002424940.1 CDS AFE_0444 NC_011761.1 384921 385253 R identified by similarity to GB:AAQ59662.1; hypothetical protein complement(384921..385253) Acidithiobacillus ferrooxidans ATCC 23270 7136824 YP_002424941.1 CDS galU NC_011761.1 385318 386214 R identified by similarity to SP:Q05852; match to protein family HMM PF00483; match to protein family HMM TIGR01099; UTP-glucose-1-phosphate uridylyltransferase complement(385318..386214) Acidithiobacillus ferrooxidans ATCC 23270 7135654 YP_002424942.1 CDS AFE_0446 NC_011761.1 386292 386987 R identified by similarity to GB:AAO91056.1; hypothetical protein complement(386292..386987) Acidithiobacillus ferrooxidans ATCC 23270 7135624 YP_002424943.1 CDS AFE_0447 NC_011761.1 387060 388445 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF07728; sigma-54 dependent DNA-binding response regulator complement(387060..388445) Acidithiobacillus ferrooxidans ATCC 23270 7136728 YP_002424944.1 CDS AFE_0448 NC_011761.1 388447 388953 R lipoprotein complement(388447..388953) Acidithiobacillus ferrooxidans ATCC 23270 7134779 YP_002424945.1 CDS AFE_0449 NC_011761.1 388953 390437 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(388953..390437) Acidithiobacillus ferrooxidans ATCC 23270 7135390 YP_002424946.1 CDS recN NC_011761.1 390600 392276 R identified by similarity to SP:P05824; match to protein family HMM PF02463; match to protein family HMM TIGR00634; DNA repair protein RecN complement(390600..392276) Acidithiobacillus ferrooxidans ATCC 23270 7135212 YP_002424947.1 CDS ppnK NC_011761.1 392276 393163 R identified by match to protein family HMM PF01513; ATP-NAD kinase complement(392276..393163) Acidithiobacillus ferrooxidans ATCC 23270 7134667 YP_002424948.1 CDS AFE_0452 NC_011761.1 393243 393968 R identified by match to protein family HMM PF03309; match to protein family HMM TIGR00671; Baf family transcriptional activator complement(393243..393968) Acidithiobacillus ferrooxidans ATCC 23270 7134245 YP_002424949.1 CDS birA NC_011761.1 393965 394870 R identified by match to protein family HMM PF02237; match to protein family HMM PF03099; match to protein family HMM TIGR00121; biotin-(acetyl-CoA carboxylase) ligase complement(393965..394870) Acidithiobacillus ferrooxidans ATCC 23270 7137228 YP_002424950.1 CDS proA NC_011761.1 394887 396143 R Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase complement(394887..396143) Acidithiobacillus ferrooxidans ATCC 23270 7136600 YP_002424951.1 CDS AFE_0456 NC_011761.1 396206 396340 D identified by glimmer; putative; hypothetical protein 396206..396340 Acidithiobacillus ferrooxidans ATCC 23270 7136834 YP_002424952.1 CDS AFE_0455 NC_011761.1 396310 397494 R identified by match to protein family HMM PF07690; hypothetical protein complement(396310..397494) Acidithiobacillus ferrooxidans ATCC 23270 7135662 YP_002424953.1 CDS holA NC_011761.1 397555 398547 R identified by similarity to SP:P28630; match to protein family HMM PF06144; match to protein family HMM TIGR01128; DNA polymerase III subunit delta complement(397555..398547) Acidithiobacillus ferrooxidans ATCC 23270 7134366 YP_002424954.1 CDS AFE_0458 NC_011761.1 398549 399067 R identified by similarity to SP:P10101; rare lipoprotein B complement(398549..399067) Acidithiobacillus ferrooxidans ATCC 23270 7136955 YP_002424955.1 CDS leuS NC_011761.1 399064 401529 R identified by similarity to SP:P07813; match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00396; leucyl-tRNA synthetase complement(399064..401529) Acidithiobacillus ferrooxidans ATCC 23270 7134844 YP_002424956.1 CDS wrbA NC_011761.1 401786 402388 D stationary phase that binds TrpR repressor; TrpR binding protein WrbA 401786..402388 Acidithiobacillus ferrooxidans ATCC 23270 7135485 YP_002424957.1 CDS AFE_0461 NC_011761.1 402405 403046 D identified by match to protein family HMM PF04264; hypothetical protein 402405..403046 Acidithiobacillus ferrooxidans ATCC 23270 7135312 YP_002424958.1 CDS AFE_0462 NC_011761.1 403117 403908 D identified by similarity to SP:P77790; match to protein family HMM PF01427; D-alanyl-D-alanine dipeptidase 403117..403908 Acidithiobacillus ferrooxidans ATCC 23270 7136817 YP_002424959.1 CDS AFE_0463 NC_011761.1 403957 404760 D identified by match to protein family HMM PF06831; formamidopyrimidine-DNA glycosylase 403957..404760 Acidithiobacillus ferrooxidans ATCC 23270 7134153 YP_002424960.1 CDS AFE_0464 NC_011761.1 404769 405281 D identified by glimmer; putative; hypothetical protein 404769..405281 Acidithiobacillus ferrooxidans ATCC 23270 7136541 YP_002424961.1 CDS AFE_0465 NC_011761.1 405436 406611 D identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation efflux family protein 405436..406611 Acidithiobacillus ferrooxidans ATCC 23270 7136159 YP_002424962.1 CDS glnA NC_011761.1 406766 408181 D identified by similarity to SP:P06711; match to protein family HMM PF00120; match to protein family HMM PF03951; match to protein family HMM TIGR00653; glutamine synthetase, type I 406766..408181 Acidithiobacillus ferrooxidans ATCC 23270 7136039 YP_002424963.1 CDS AFE_0467 NC_011761.1 408385 408897 D identified by similarity to GB:AAQ61252.1; hypothetical protein 408385..408897 Acidithiobacillus ferrooxidans ATCC 23270 7136985 YP_002424964.1 CDS surE NC_011761.1 408996 409748 D identified by similarity to SP:P36664; match to protein family HMM PF01975; match to protein family HMM TIGR00087; acid phosphatase SurE 408996..409748 Acidithiobacillus ferrooxidans ATCC 23270 7135313 YP_002424965.1 CDS pcm-2 NC_011761.1 409730 410455 D identified by similarity to SP:P24206; match to protein family HMM PF01135; match to protein family HMM TIGR00080; protein-L-isoaspartate O-methyltransferase 409730..410455 Acidithiobacillus ferrooxidans ATCC 23270 7135784 YP_002424966.1 CDS rpoS NC_011761.1 410427 411380 D identified by similarity to SP:P13445; match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; RNA polymerase sigma-38 factor 410427..411380 Acidithiobacillus ferrooxidans ATCC 23270 7136154 YP_002424967.1 CDS AFE_0471 NC_011761.1 411403 411777 R identified by similarity to GB:CAD86279.1; match to protein family HMM PF04430; hypothetical protein complement(411403..411777) Acidithiobacillus ferrooxidans ATCC 23270 7134558 YP_002424968.1 CDS AFE_0472 NC_011761.1 411872 413053 D identified by similarity to GB:AAO58485.1; match to protein family HMM PF00155; class I/II aminotransferase 411872..413053 Acidithiobacillus ferrooxidans ATCC 23270 7136928 YP_002424969.1 CDS metM NC_011761.1 413065 414375 D identified by similarity to SP:P08499; match to protein family HMM PF00742; match to protein family HMM PF01113; match to protein family HMM PF01842; match to protein family HMM PF03447; homoserine dehydrogenase 413065..414375 Acidithiobacillus ferrooxidans ATCC 23270 7136068 YP_002424970.1 CDS thrC NC_011761.1 414427 415557 D catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase 414427..415557 Acidithiobacillus ferrooxidans ATCC 23270 7136358 YP_002424971.1 CDS AFE_0475 NC_011761.1 415557 416522 D identified by similarity to GB:AAQ60147.1; hypothetical protein 415557..416522 Acidithiobacillus ferrooxidans ATCC 23270 7134732 YP_002424972.1 CDS recJ NC_011761.1 416523 418340 D identified by similarity to SP:P21893; match to protein family HMM PF01368; single-stranded-DNA-specific exonuclease RecJ 416523..418340 Acidithiobacillus ferrooxidans ATCC 23270 7135104 YP_002424973.1 CDS AFE_0477 NC_011761.1 418549 418779 D identified by similarity to SP:Q05459; match to protein family HMM PF04014; virulence protein 418549..418779 Acidithiobacillus ferrooxidans ATCC 23270 7135703 YP_002424974.1 CDS AFE_0478 NC_011761.1 418785 419189 D identified by similarity to PIR:B49205; match to protein family HMM PF01850; match to protein family HMM PF07647; virulence-associated protein 418785..419189 Acidithiobacillus ferrooxidans ATCC 23270 7135410 YP_002424975.1 CDS prfB NC_011761.1 419322 420420 D Translation involves an autoregulatory +1 programmed frameshift at a TGA codon near the N-terminus; identified by similarity to SP:P28353; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00020; peptide chain release factor 2, programmed frameshift join(419322..419396,419398..420420) Acidithiobacillus ferrooxidans ATCC 23270 7134748 YP_002424976.1 CDS lysS NC_011761.1 420457 421947 D identified by similarity to SP:P14825; match to protein family HMM PF00152; match to protein family HMM PF01336; match to protein family HMM TIGR00499; lysyl-tRNA synthetase 420457..421947 Acidithiobacillus ferrooxidans ATCC 23270 7134629 YP_002424977.1 CDS lolC NC_011761.1 421944 423188 D identified by similarity to SP:P75956; match to protein family HMM PF02687; match to protein family HMM TIGR02212; lipoprotein releasing system transmembrane protein LolC 421944..423188 Acidithiobacillus ferrooxidans ATCC 23270 7135372 YP_002424978.1 CDS lolD NC_011761.1 423181 423876 D identified by similarity to SP:P75957; match to protein family HMM PF00005; lipoprotein releasing system, ATP-binding protein LolD 423181..423876 Acidithiobacillus ferrooxidans ATCC 23270 7135622 YP_002424979.1 CDS AFE_0482 NC_011761.1 423873 424433 R identified by similarity to PIR:B83271; hypothetical protein complement(423873..424433) Acidithiobacillus ferrooxidans ATCC 23270 7135268 YP_002424980.1 CDS AFE_0484 NC_011761.1 424418 426628 D identified by match to protein family HMM PF03772; match to protein family HMM TIGR00360; DNA internalization-related competence protein ComEC/Rec2 424418..426628 Acidithiobacillus ferrooxidans ATCC 23270 7134350 YP_002424981.1 CDS AFE_0485 NC_011761.1 426721 427341 D identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 426721..427341 Acidithiobacillus ferrooxidans ATCC 23270 7135658 YP_002424982.1 CDS AFE_0486 NC_011761.1 427338 427742 D identified by match to protein family HMM PF02472; ExbD/TolR family biopolymer transport protein 427338..427742 Acidithiobacillus ferrooxidans ATCC 23270 7135201 YP_002424983.1 CDS AFE_0487 NC_011761.1 427851 428432 D identified by similarity to PIR:F64553; match to protein family HMM PF04028; hypothetical protein 427851..428432 Acidithiobacillus ferrooxidans ATCC 23270 7137121 YP_002424984.1 CDS AFE_0488 NC_011761.1 428429 429574 D identified by glimmer; putative; hypothetical protein 428429..429574 Acidithiobacillus ferrooxidans ATCC 23270 7135013 YP_002424985.1 CDS lpxK NC_011761.1 429571 430569 D identified by match to protein family HMM PF02606; match to protein family HMM TIGR00682; tetraacyldisaccharide 4'-kinase 429571..430569 Acidithiobacillus ferrooxidans ATCC 23270 7135782 YP_002424986.1 CDS AFE_0490 NC_011761.1 430569 430751 D identified by similarity to GB:CAD16238.1; match to protein family HMM PF03966; hypothetical protein 430569..430751 Acidithiobacillus ferrooxidans ATCC 23270 7136556 YP_002424987.1 CDS kdsB NC_011761.1 430748 431509 D identified by match to protein family HMM PF02348; match to protein family HMM TIGR00466; 3-deoxy-D-manno-octulosonate cytidylyltransferase 430748..431509 Acidithiobacillus ferrooxidans ATCC 23270 7134371 YP_002424988.1 CDS ppa NC_011761.1 431531 432052 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 431531..432052 Acidithiobacillus ferrooxidans ATCC 23270 7134549 YP_002424989.1 CDS AFE_0493 NC_011761.1 432117 432497 D identified by glimmer; putative; hypothetical protein 432117..432497 Acidithiobacillus ferrooxidans ATCC 23270 7135362 YP_002424990.1 CDS AFE_0495 NC_011761.1 433554 433781 D identified by glimmer; putative; hypothetical protein 433554..433781 Acidithiobacillus ferrooxidans ATCC 23270 7135074 YP_002424991.1 CDS AFE_0496 NC_011761.1 433901 434497 D transferase 433901..434497 Acidithiobacillus ferrooxidans ATCC 23270 7135457 YP_002424992.1 CDS AFE_0498 NC_011761.1 435706 436143 D identified by similarity to GB:BAC72705.1; match to protein family HMM PF07366; hypothetical protein 435706..436143 Acidithiobacillus ferrooxidans ATCC 23270 7135525 YP_002424993.1 CDS AFE_0499 NC_011761.1 436230 437363 D identified by glimmer; putative; hypothetical protein 436230..437363 Acidithiobacillus ferrooxidans ATCC 23270 7135181 YP_002424994.1 CDS AFE_0500 NC_011761.1 437450 437863 D identified by similarity to GB:AAQ58729.1; match to protein family HMM PF04828; hypothetical protein 437450..437863 Acidithiobacillus ferrooxidans ATCC 23270 7134764 YP_002424995.1 CDS AFE_0501 NC_011761.1 437940 438293 D identified by similarity to GB:AAQ57956.1; hypothetical protein 437940..438293 Acidithiobacillus ferrooxidans ATCC 23270 7135734 YP_002424996.1 CDS AFE_0502 NC_011761.1 438369 438794 D identified by similarity to GB:CAD17748.1; match to protein family HMM PF06983; hypothetical protein 438369..438794 Acidithiobacillus ferrooxidans ATCC 23270 7136161 YP_002424997.1 CDS AFE_0503 NC_011761.1 439305 439445 D identified by similarity to PIR:T44273; hypothetical protein 439305..439445 Acidithiobacillus ferrooxidans ATCC 23270 7137025 YP_002424998.1 CDS AFE_0505 NC_011761.1 439534 440082 D identified by glimmer; putative; hypothetical protein 439534..440082 Acidithiobacillus ferrooxidans ATCC 23270 7136881 YP_002424999.1 CDS AFE_0504 NC_011761.1 440054 440242 R identified by glimmer; putative; hypothetical protein complement(440054..440242) Acidithiobacillus ferrooxidans ATCC 23270 7136782 YP_002425000.1 CDS AFE_0506 NC_011761.1 440216 441076 D identified by glimmer; putative; hypothetical protein 440216..441076 Acidithiobacillus ferrooxidans ATCC 23270 7135077 YP_002425001.1 CDS AFE_0507 NC_011761.1 441199 442443 D identified by match to protein family HMM PF00589; match to protein family HMM PF02899; site-specific recombinase, phage integrase family 441199..442443 Acidithiobacillus ferrooxidans ATCC 23270 7134706 YP_002425002.1 CDS AFE_0508 NC_011761.1 442440 443381 D identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family 442440..443381 Acidithiobacillus ferrooxidans ATCC 23270 7136187 YP_002425003.1 CDS AFE_0509 NC_011761.1 443374 444372 D identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family 443374..444372 Acidithiobacillus ferrooxidans ATCC 23270 7136992 YP_002425004.1 CDS AFE_0510 NC_011761.1 444547 445074 D transposase, degenerate 444547..445074 Acidithiobacillus ferrooxidans ATCC 23270 7134014 YP_002425005.1 CDS AFE_0512 NC_011761.1 445928 446131 D identified by glimmer; putative; hypothetical protein 445928..446131 Acidithiobacillus ferrooxidans ATCC 23270 7135198 YP_002425006.1 CDS AFE_0513 NC_011761.1 446517 446723 D identified by similarity to GB:AAM71824.1; hypothetical protein 446517..446723 Acidithiobacillus ferrooxidans ATCC 23270 7136763 YP_002425007.1 CDS AFE_0514 NC_011761.1 446705 446824 D identified by glimmer; putative; hypothetical protein 446705..446824 Acidithiobacillus ferrooxidans ATCC 23270 7135068 YP_002425008.1 CDS AFE_0515 NC_011761.1 447712 447924 D identified by glimmer; putative; hypothetical protein 447712..447924 Acidithiobacillus ferrooxidans ATCC 23270 7134318 YP_002425009.1 CDS AFE_0516 NC_011761.1 448001 448267 R identified by glimmer; putative; hypothetical protein complement(448001..448267) Acidithiobacillus ferrooxidans ATCC 23270 7136430 YP_002425010.1 CDS AFE_0518 NC_011761.1 448643 449236 D identified by match to protein family HMM PF03167; hypothetical protein 448643..449236 Acidithiobacillus ferrooxidans ATCC 23270 7135069 YP_002425011.1 CDS AFE_0519 NC_011761.1 449303 450778 R identified by similarity to SP:Q92RB2; match to protein family HMM PF02696; hypothetical protein complement(449303..450778) Acidithiobacillus ferrooxidans ATCC 23270 7135237 YP_002425012.1 CDS clpA NC_011761.1 450782 453040 R identified by similarity to SP:P15716; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; match to protein family HMM TIGR02639; ATP-dependent Clp protease, ATP-binding subunit ClpA complement(450782..453040) Acidithiobacillus ferrooxidans ATCC 23270 7137291 YP_002425013.1 CDS AFE_0521 NC_011761.1 453044 453388 R identified by similarity to SP:Q8UFN4; match to protein family HMM PF02617; ATP-dependent Clp protease adaptor protein ClpS complement(453044..453388) Acidithiobacillus ferrooxidans ATCC 23270 7134503 YP_002425014.1 CDS AFE_0522 NC_011761.1 453529 454305 R identified by similarity to GB:CAE35777.1; match to protein family HMM PF00639; PPIC-type peptidyl-prolyl cis-trans isomerase complement(453529..454305) Acidithiobacillus ferrooxidans ATCC 23270 7136851 YP_002425015.1 CDS thiJ NC_011761.1 454321 454932 R identified by similarity to SP:Q46948; match to protein family HMM PF01965; match to protein family HMM TIGR01383; 4-methyl-5(beta-hydroxyethyl)-thiazole monophosphate synthesis protein complement(454321..454932) Acidithiobacillus ferrooxidans ATCC 23270 7135413 YP_002425016.1 CDS ctpA NC_011761.1 455070 456518 R identified by similarity to SP:Q44879; match to protein family HMM PF00595; match to protein family HMM PF03572; match to protein family HMM TIGR00225; carboxy-terminal peptidase complement(455070..456518) Acidithiobacillus ferrooxidans ATCC 23270 7136375 YP_002425017.1 CDS AFE_0525 NC_011761.1 456582 458000 R identified by match to protein family HMM PF01551; M23/M37 peptidase domain-containing protein complement(456582..458000) Acidithiobacillus ferrooxidans ATCC 23270 7134362 YP_002425018.1 CDS gpmI-2 NC_011761.1 458004 459533 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(458004..459533) Acidithiobacillus ferrooxidans ATCC 23270 7134961 YP_002425019.1 CDS AFE_0527 NC_011761.1 459601 462087 R identified by match to protein family HMM PF00343; match to protein family HMM TIGR02093; glycogen/starch/alpha-glucan phosphorylase complement(459601..462087) Acidithiobacillus ferrooxidans ATCC 23270 7135527 YP_002425020.1 CDS AFE_0528 NC_011761.1 462232 462681 D identified by similarity to GB:AAN50762.1; hypothetical protein 462232..462681 Acidithiobacillus ferrooxidans ATCC 23270 7134476 YP_002425021.1 CDS AFE_0529 NC_011761.1 462715 463101 D identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein 462715..463101 Acidithiobacillus ferrooxidans ATCC 23270 7136945 YP_002425022.1 CDS AFE_0530 NC_011761.1 463114 464055 R identified by match to protein family HMM PF00294; carbohydrate kinase, PfkB family complement(463114..464055) Acidithiobacillus ferrooxidans ATCC 23270 7137178 YP_002425023.1 CDS AFE_0531 NC_011761.1 464176 464781 D identified by similarity to GB:AAK57731.1; hypothetical protein 464176..464781 Acidithiobacillus ferrooxidans ATCC 23270 7136341 YP_002425024.1 CDS metK NC_011761.1 464925 466094 D identified by similarity to SP:P04384; match to protein family HMM PF00438; match to protein family HMM PF02772; match to protein family HMM PF02773; match to protein family HMM TIGR01034; S-adenosylmethionine synthetase 464925..466094 Acidithiobacillus ferrooxidans ATCC 23270 7135238 YP_002425025.1 CDS AFE_0533 NC_011761.1 466181 466276 D identified by glimmer; putative; hypothetical protein 466181..466276 Acidithiobacillus ferrooxidans ATCC 23270 7134731 YP_002425026.1 CDS ahcY NC_011761.1 466291 467688 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 466291..467688 Acidithiobacillus ferrooxidans ATCC 23270 7135979 YP_002425027.1 CDS metF NC_011761.1 467688 468506 D identified by similarity to SP:P00394; match to protein family HMM PF02219; match to protein family HMM TIGR00676; 5,10-methylenetetrahydrofolate reductase 467688..468506 Acidithiobacillus ferrooxidans ATCC 23270 7134124 YP_002425028.1 CDS cbbP NC_011761.1 468611 469483 D identified by similarity to SP:P12033; match to protein family HMM PF00485; phosphoribulokinase 468611..469483 Acidithiobacillus ferrooxidans ATCC 23270 7135690 YP_002425029.1 CDS AFE_0537 NC_011761.1 469416 470297 D identified by match to protein family HMM PF01569; PAP2 family protein 469416..470297 Acidithiobacillus ferrooxidans ATCC 23270 7135429 YP_002425030.1 CDS AFE_0538 NC_011761.1 470323 471849 R identified by match to protein family HMM PF05670; hypothetical protein complement(470323..471849) Acidithiobacillus ferrooxidans ATCC 23270 7134390 YP_002425031.1 CDS AFE_0539 NC_011761.1 471885 473558 R identified by match to protein family HMM PF01583; match to protein family HMM PF01747; match to protein family HMM TIGR00455; sulfate adenylyltransferase complement(471885..473558) Acidithiobacillus ferrooxidans ATCC 23270 7135279 YP_002425032.1 CDS AFE_0540 NC_011761.1 473569 474138 R Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis; adenine phosphoribosyltransferase complement(473569..474138) Acidithiobacillus ferrooxidans ATCC 23270 7135254 YP_002425033.1 CDS AFE_0541 NC_011761.1 474197 474328 D identified by glimmer; putative; hypothetical protein 474197..474328 Acidithiobacillus ferrooxidans ATCC 23270 7134853 YP_002425034.1 CDS groEL NC_011761.1 474399 476054 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(474399..476054) Acidithiobacillus ferrooxidans ATCC 23270 7134737 YP_002425035.1 CDS groES NC_011761.1 476101 476391 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(476101..476391) Acidithiobacillus ferrooxidans ATCC 23270 7135610 YP_002425036.1 CDS AFE_0544 NC_011761.1 476519 477349 R identified by similarity to PIR:AG2426; hypothetical protein complement(476519..477349) Acidithiobacillus ferrooxidans ATCC 23270 7135685 YP_002425037.1 CDS dsbD NC_011761.1 477663 479513 D identified by similarity to SP:P36655; match to protein family HMM PF02683; thiol:disulfide interchange protein DsbD 477663..479513 Acidithiobacillus ferrooxidans ATCC 23270 7137311 YP_002425038.1 CDS AFE_0546 NC_011761.1 479533 479745 R identified by similarity to GB:AAO91158.1; hypothetical protein complement(479533..479745) Acidithiobacillus ferrooxidans ATCC 23270 7136663 YP_002425039.1 CDS ilvE NC_011761.1 479750 480673 R identified by match to protein family HMM PF01063; match to protein family HMM TIGR01122; branched-chain amino acid aminotransferase complement(479750..480673) Acidithiobacillus ferrooxidans ATCC 23270 7135262 YP_002425040.1 CDS glnE NC_011761.1 480686 483550 R identified by similarity to SP:P30870; match to protein family HMM PF03710; glutamate-ammonia-ligase adenylyltransferase complement(480686..483550) Acidithiobacillus ferrooxidans ATCC 23270 7134566 YP_002425041.1 CDS AFE_0549 NC_011761.1 483763 487395 D identified by similarity to PIR:E82325; hypothetical protein 483763..487395 Acidithiobacillus ferrooxidans ATCC 23270 7136355 YP_002425042.1 CDS AFE_0550 NC_011761.1 487465 488691 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISAfe3, transposase complement(487465..488691) Acidithiobacillus ferrooxidans ATCC 23270 7136373 YP_002425043.1 CDS AFE_0551 NC_011761.1 489001 489849 D identified by match to protein family HMM PF00795; hydrolase 489001..489849 Acidithiobacillus ferrooxidans ATCC 23270 7134244 YP_002425044.1 CDS AFE_0552 NC_011761.1 490047 491810 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF05992; match to protein family HMM PF06472; ABC transporter permease/ATP-binding protein 490047..491810 Acidithiobacillus ferrooxidans ATCC 23270 7136137 YP_002425045.1 CDS AFE_0553 NC_011761.1 491832 492407 D identified by similarity to GB:CAD76995.1; match to protein family HMM PF00578; match to protein family HMM PF08534; hypothetical protein 491832..492407 Acidithiobacillus ferrooxidans ATCC 23270 7134916 YP_002425046.1 CDS AFE_0554 NC_011761.1 492431 492649 R identified by glimmer; putative; hypothetical protein complement(492431..492649) Acidithiobacillus ferrooxidans ATCC 23270 7134142 YP_002425047.1 CDS lspA NC_011761.1 492899 493357 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(492899..493357) Acidithiobacillus ferrooxidans ATCC 23270 7135611 YP_002425048.1 CDS ileS NC_011761.1 493357 496170 R identified by similarity to SP:P00956; match to protein family HMM PF00133; match to protein family HMM PF06827; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00392; isoleucyl-tRNA synthetase complement(493357..496170) Acidithiobacillus ferrooxidans ATCC 23270 7134286 YP_002425049.1 CDS ribF NC_011761.1 496173 497105 R identified by similarity to SP:P08391; match to protein family HMM PF01687; match to protein family HMM PF06574; match to protein family HMM TIGR00083; riboflavin biosynthesis protein RibF complement(496173..497105) Acidithiobacillus ferrooxidans ATCC 23270 7136883 YP_002425050.1 CDS AFE_0558 NC_011761.1 497204 497590 R identified by similarity to GB:AAN47976.1; hypothetical protein complement(497204..497590) Acidithiobacillus ferrooxidans ATCC 23270 7136845 YP_002425051.1 CDS mviN NC_011761.1 497649 499202 R identified by match to protein family HMM PF03023; match to protein family HMM TIGR01695; integral membrane protein MviN complement(497649..499202) Acidithiobacillus ferrooxidans ATCC 23270 7134716 YP_002425052.1 CDS AFE_0561 NC_011761.1 499216 499575 D identified by glimmer; putative; hypothetical protein 499216..499575 Acidithiobacillus ferrooxidans ATCC 23270 7134720 YP_002425053.1 CDS AFE_0560 NC_011761.1 499528 499896 R identified by glimmer; putative; hypothetical protein complement(499528..499896) Acidithiobacillus ferrooxidans ATCC 23270 7136282 YP_002425054.1 CDS AFE_0562 NC_011761.1 500146 501009 D identified by similarity to SP:P23839; match to protein family HMM PF03755; match to protein family HMM PF08340; match to protein family HMM TIGR00255; yicC family protein 500146..501009 Acidithiobacillus ferrooxidans ATCC 23270 7136107 YP_002425055.1 CDS gmk NC_011761.1 501016 501654 D Essential for recycling GMP and indirectly, cGMP; guanylate kinase 501016..501654 Acidithiobacillus ferrooxidans ATCC 23270 7136916 YP_002425056.1 CDS rpoZ NC_011761.1 501678 501953 D identified by match to protein family HMM PF01192; match to protein family HMM TIGR00690; DNA-directed RNA polymerase subunit omega 501678..501953 Acidithiobacillus ferrooxidans ATCC 23270 7134570 YP_002425057.1 CDS spoT NC_011761.1 502012 504216 D identified by similarity to SP:P17580; match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF02824; match to protein family HMM PF04607; match to protein family HMM TIGR00691; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase 502012..504216 Acidithiobacillus ferrooxidans ATCC 23270 7134785 YP_002425058.1 CDS AFE_0566 NC_011761.1 504232 504621 D identified by match to protein family HMM PF01042; match to protein family HMM TIGR00004; endoribonuclease L-PSP 504232..504621 Acidithiobacillus ferrooxidans ATCC 23270 7136489 YP_002425059.1 CDS AFE_0567 NC_011761.1 504623 504838 D identified by similarity to GB:AAL95505.1; hypothetical protein 504623..504838 Acidithiobacillus ferrooxidans ATCC 23270 7136515 YP_002425060.1 CDS recG NC_011761.1 504840 506894 D identified by similarity to SP:P24230; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF01336; match to protein family HMM PF04851; match to protein family HMM TIGR00643; ATP-dependent DNA helicase RecG 504840..506894 Acidithiobacillus ferrooxidans ATCC 23270 7136406 YP_002425061.1 CDS AFE_0569 NC_011761.1 506987 507832 D identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein 506987..507832 Acidithiobacillus ferrooxidans ATCC 23270 7135250 YP_002425062.1 CDS hemG NC_011761.1 507844 509184 R identified by similarity to SP:P56601; match to protein family HMM PF01266; match to protein family HMM PF01593; match to protein family HMM TIGR00562; protoporphyrinogen oxidase complement(507844..509184) Acidithiobacillus ferrooxidans ATCC 23270 7134886 YP_002425063.1 CDS AFE_0571 NC_011761.1 509189 510232 R identified by match to protein family HMM PF01594; hypothetical protein complement(509189..510232) Acidithiobacillus ferrooxidans ATCC 23270 7136965 YP_002425064.1 CDS AFE_0572 NC_011761.1 510541 511335 D identified by similarity to SP:Q96YW6; match to protein family HMM PF01875; hypothetical protein 510541..511335 Acidithiobacillus ferrooxidans ATCC 23270 7135681 YP_002425065.1 CDS AFE_0573 NC_011761.1 511316 511924 D identified by similarity to PIR:B64401; match to protein family HMM PF01871; match to protein family HMM TIGR00296; hypothetical protein 511316..511924 Acidithiobacillus ferrooxidans ATCC 23270 7136371 YP_002425066.1 CDS AFE_0574 NC_011761.1 511917 513002 D identified by match to protein family HMM PF04055; radical SAM domain-containing protein 511917..513002 Acidithiobacillus ferrooxidans ATCC 23270 7136247 YP_002425067.1 CDS AFE_0575 NC_011761.1 513010 514344 R identified by similarity to SP:P02930; match to protein family HMM PF02321; match to protein family HMM TIGR01844; TolC family type I secretion outer membrane protein complement(513010..514344) Acidithiobacillus ferrooxidans ATCC 23270 7134181 YP_002425068.1 CDS pabB NC_011761.1 514510 515898 D identified by similarity to SP:P05041; match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00553; para-aminobenzoate synthase, component I 514510..515898 Acidithiobacillus ferrooxidans ATCC 23270 7136113 YP_002425069.1 CDS AFE_0577 NC_011761.1 515873 516952 D identified by match to protein family HMM PF03706; match to protein family HMM TIGR00374; hypothetical protein 515873..516952 Acidithiobacillus ferrooxidans ATCC 23270 7134277 YP_002425070.1 CDS AFE_0579 NC_011761.1 517171 517464 D identified by glimmer; putative; hypothetical protein 517171..517464 Acidithiobacillus ferrooxidans ATCC 23270 7135846 YP_002425071.1 CDS AFE_0580 NC_011761.1 517499 517630 D identified by glimmer; putative; hypothetical protein 517499..517630 Acidithiobacillus ferrooxidans ATCC 23270 7134860 YP_002425072.1 CDS AFE_0581 NC_011761.1 517630 517812 D identified by glimmer; putative; hypothetical protein 517630..517812 Acidithiobacillus ferrooxidans ATCC 23270 7136886 YP_002425073.1 CDS AFE_0582 NC_011761.1 517863 518060 R identified by similarity to GB:AAL62784.1; hypothetical protein complement(517863..518060) Acidithiobacillus ferrooxidans ATCC 23270 7136253 YP_002425074.1 CDS AFE_0583 NC_011761.1 518054 518284 R identified by glimmer; putative; hypothetical protein complement(518054..518284) Acidithiobacillus ferrooxidans ATCC 23270 7136295 YP_002425075.1 CDS AFE_0585 NC_011761.1 519125 519379 D identified by glimmer; putative; hypothetical protein 519125..519379 Acidithiobacillus ferrooxidans ATCC 23270 7134211 YP_002425076.1 CDS AFE_0587 NC_011761.1 519523 520530 R identified by match to protein family HMM PF01699; sodium/calcium exchanger complement(519523..520530) Acidithiobacillus ferrooxidans ATCC 23270 7135845 YP_002425077.1 CDS AFE_0588 NC_011761.1 520643 521266 D identified by glimmer; putative; hypothetical protein 520643..521266 Acidithiobacillus ferrooxidans ATCC 23270 7136478 YP_002425078.1 CDS AFE_0589 NC_011761.1 521368 523221 D identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF03880; ATP-dependent RNA helicase 521368..523221 Acidithiobacillus ferrooxidans ATCC 23270 7135620 YP_002425079.1 CDS AFE_0590 NC_011761.1 523319 523522 R identified by similarity to GB:AAD10037.1; match to protein family HMM PF00313; cold-shock protein complement(523319..523522) Acidithiobacillus ferrooxidans ATCC 23270 7137250 YP_002425080.1 CDS priA NC_011761.1 523626 525788 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM TIGR00595; primosomal protein N` complement(523626..525788) Acidithiobacillus ferrooxidans ATCC 23270 7137273 YP_002425081.1 CDS ubiA NC_011761.1 526056 526958 R identified by similarity to SP:P26601; match to protein family HMM PF01040; match to protein family HMM TIGR01474; 4-hydroxybenzoate polyprenyltransferase complement(526056..526958) Acidithiobacillus ferrooxidans ATCC 23270 7136795 YP_002425082.1 CDS AFE_0593 NC_011761.1 526958 527470 R identified by match to protein family HMM PF04345; chorismate lyase family protein complement(526958..527470) Acidithiobacillus ferrooxidans ATCC 23270 7135041 YP_002425083.1 CDS AFE_0594 NC_011761.1 527561 528163 R identified by similarity to GB:CAB91878.1; phosphatidylethanolamine N-methyltransferase complement(527561..528163) Acidithiobacillus ferrooxidans ATCC 23270 7134111 YP_002425084.1 CDS AFE_0595 NC_011761.1 528323 528706 D lipoprotein 528323..528706 Acidithiobacillus ferrooxidans ATCC 23270 7135509 YP_002425085.1 CDS miaB NC_011761.1 528790 530145 D catalyzes the formation of 2-methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine from N6-(dimethylallyl)adenosine (i(6)A); (dimethylallyl)adenosine tRNA methylthiotransferase 528790..530145 Acidithiobacillus ferrooxidans ATCC 23270 7134256 YP_002425086.1 CDS AFE_0597 NC_011761.1 530111 531133 D identified by similarity to SP:P77349; match to protein family HMM PF02562; PhoH-like protein 530111..531133 Acidithiobacillus ferrooxidans ATCC 23270 7135373 YP_002425087.1 CDS AFE_0598 NC_011761.1 531151 531627 D identified by match to protein family HMM PF02130; match to protein family HMM TIGR00043; hypothetical protein 531151..531627 Acidithiobacillus ferrooxidans ATCC 23270 7134778 YP_002425088.1 CDS AFE_0599 NC_011761.1 531620 532495 D identified by similarity to SP:Q9R874; match to protein family HMM PF00571; match to protein family HMM PF03471; magnesium and cobalt efflux protein 531620..532495 Acidithiobacillus ferrooxidans ATCC 23270 7136297 YP_002425089.1 CDS cutE NC_011761.1 532507 534012 D identified by similarity to SP:P23930; match to protein family HMM PF00795; match to protein family HMM TIGR00546; apolipoprotein N-acyltransferase 532507..534012 Acidithiobacillus ferrooxidans ATCC 23270 7134199 YP_002425090.1 CDS pmbA NC_011761.1 533981 535327 R identified by similarity to SP:P24231; match to protein family HMM PF01523; pmbA protein complement(533981..535327) Acidithiobacillus ferrooxidans ATCC 23270 7136749 YP_002425091.1 CDS AFE_0602 NC_011761.1 535621 536505 D identified by match to protein family HMM PF01297; cation ABC transporter periplasmic cation-binding protein 535621..536505 Acidithiobacillus ferrooxidans ATCC 23270 7134401 YP_002425092.1 CDS AFE_0603 NC_011761.1 536519 537343 D identified by match to protein family HMM PF00005; cation ABC transporter ATP-binding protein 536519..537343 Acidithiobacillus ferrooxidans ATCC 23270 7137003 YP_002425093.1 CDS AFE_0604 NC_011761.1 537363 538253 D identified by match to protein family HMM PF00950; cation ABC transporter permease 537363..538253 Acidithiobacillus ferrooxidans ATCC 23270 7134974 YP_002425094.1 CDS AFE_0605 NC_011761.1 538257 539066 D identified by match to protein family HMM PF00950; cation ABC transporter permease 538257..539066 Acidithiobacillus ferrooxidans ATCC 23270 7137261 YP_002425095.1 CDS AFE_0606 NC_011761.1 539103 540368 R identified by glimmer; putative; hypothetical protein complement(539103..540368) Acidithiobacillus ferrooxidans ATCC 23270 7135537 YP_002425096.1 CDS AFE_0607 NC_011761.1 540304 541134 R identified by similarity to GB:AAN66818.1; hypothetical protein complement(540304..541134) Acidithiobacillus ferrooxidans ATCC 23270 7135473 YP_002425097.1 CDS AFE_0608 NC_011761.1 541242 541418 R identified by glimmer; putative; hypothetical protein complement(541242..541418) Acidithiobacillus ferrooxidans ATCC 23270 7136790 YP_002425098.1 CDS AFE_0609 NC_011761.1 541415 542428 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein complement(541415..542428) Acidithiobacillus ferrooxidans ATCC 23270 7134313 YP_002425099.1 CDS AFE_0610 NC_011761.1 542425 542676 R identified by glimmer; putative; hypothetical protein complement(542425..542676) Acidithiobacillus ferrooxidans ATCC 23270 7134589 YP_002425100.1 CDS AFE_0611 NC_011761.1 542742 544058 R identified by glimmer; putative; hypothetical protein complement(542742..544058) Acidithiobacillus ferrooxidans ATCC 23270 7135951 YP_002425101.1 CDS AFE_0612 NC_011761.1 543982 544824 R identified by similarity to GB:AAN66818.1; hypothetical protein complement(543982..544824) Acidithiobacillus ferrooxidans ATCC 23270 7135146 YP_002425102.1 CDS AFE_0613 NC_011761.1 545408 545614 R identified by glimmer; putative; hypothetical protein complement(545408..545614) Acidithiobacillus ferrooxidans ATCC 23270 7135566 YP_002425103.1 CDS AFE_0614 NC_011761.1 545720 546949 D identified by similarity to PIR:AD2455; hypothetical protein 545720..546949 Acidithiobacillus ferrooxidans ATCC 23270 7136888 YP_002425104.1 CDS AFE_0615 NC_011761.1 546946 548208 D identified by match to protein family HMM PF00534; group 1 glycosyl transferase 546946..548208 Acidithiobacillus ferrooxidans ATCC 23270 7134517 YP_002425105.1 CDS AFE_0616 NC_011761.1 548205 549449 D identified by match to protein family HMM PF00534; group 1 family glycosyltransferase 548205..549449 Acidithiobacillus ferrooxidans ATCC 23270 7134045 YP_002425106.1 CDS AFE_0617 NC_011761.1 549449 551278 D identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein 549449..551278 Acidithiobacillus ferrooxidans ATCC 23270 7134879 YP_002425107.1 CDS AFE_0618 NC_011761.1 551275 552579 D identified by match to protein family HMM PF00070; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose/GDP-mannose dehydrogenase family protein 551275..552579 Acidithiobacillus ferrooxidans ATCC 23270 7135966 YP_002425108.1 CDS AFE_0619 NC_011761.1 552620 553462 D identified by glimmer; putative; hypothetical protein 552620..553462 Acidithiobacillus ferrooxidans ATCC 23270 7137141 YP_002425109.1 CDS AFE_0621 NC_011761.1 553474 554142 D identified by match to protein family HMM PF00300; match to protein family HMM TIGR03162; phosphoglycerate mutase family protein 553474..554142 Acidithiobacillus ferrooxidans ATCC 23270 7134550 YP_002425110.1 CDS AFE_0620 NC_011761.1 554119 554904 R identified by glimmer; putative; hypothetical protein complement(554119..554904) Acidithiobacillus ferrooxidans ATCC 23270 7136896 YP_002425111.1 CDS AFE_0622 NC_011761.1 555070 555882 R identified by similarity to GB:BAC65281.1; hypothetical protein complement(555070..555882) Acidithiobacillus ferrooxidans ATCC 23270 7134559 YP_002425112.1 CDS AFE_0623 NC_011761.1 556014 556778 D identified by match to protein family HMM PF01209; match to protein family HMM PF08241; match to protein family HMM PF08242; UbiE/COQ5 family methyltransferase 556014..556778 Acidithiobacillus ferrooxidans ATCC 23270 7134283 YP_002425113.1 CDS leuC NC_011761.1 556828 558240 D dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit 556828..558240 Acidithiobacillus ferrooxidans ATCC 23270 7136649 YP_002425114.1 CDS AFE_0625 NC_011761.1 558209 558388 D identified by glimmer; putative; hypothetical protein 558209..558388 Acidithiobacillus ferrooxidans ATCC 23270 7136524 YP_002425115.1 CDS leuD NC_011761.1 558388 559011 D catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate in leucine biosynthesis; forms a heterodimer of LeuC/D; isopropylmalate isomerase small subunit 558388..559011 Acidithiobacillus ferrooxidans ATCC 23270 7134736 YP_002425116.1 CDS AFE_0627 NC_011761.1 559032 559346 D identified by glimmer; putative; hypothetical protein 559032..559346 Acidithiobacillus ferrooxidans ATCC 23270 7136922 YP_002425117.1 CDS pdxH NC_011761.1 559363 560019 R identified by similarity to SP:P28225; match to protein family HMM PF01243; match to protein family HMM TIGR00558; pyridoxamine 5'-phosphate oxidase complement(559363..560019) Acidithiobacillus ferrooxidans ATCC 23270 7137055 YP_002425118.1 CDS rpiA NC_011761.1 560051 560710 R identified by match to protein family HMM PF06026; match to protein family HMM TIGR00021; ribose 5-phosphate isomerase A complement(560051..560710) Acidithiobacillus ferrooxidans ATCC 23270 7135470 YP_002425119.1 CDS AFE_0630 NC_011761.1 560700 561452 R identified by match to protein family HMM PF01965; DJ-1/PfpI family protein complement(560700..561452) Acidithiobacillus ferrooxidans ATCC 23270 7134717 YP_002425120.1 CDS cyoA NC_011761.1 562218 563183 D identified by similarity to SP:P18400; match to protein family HMM PF00116; match to protein family HMM PF06481; cytochrome o ubiquinol oxidase subunit II 562218..563183 Acidithiobacillus ferrooxidans ATCC 23270 7137126 YP_002425121.1 CDS cyoB NC_011761.1 563236 565353 D identified by similarity to SP:P18401; match to protein family HMM PF00115; cytochrome o ubiquinol oxidase subunit I 563236..565353 Acidithiobacillus ferrooxidans ATCC 23270 7137240 YP_002425122.1 CDS cyoC NC_011761.1 565420 566055 D identified by similarity to SP:P18402; cytochrome o ubiquinol oxidase subunit III 565420..566055 Acidithiobacillus ferrooxidans ATCC 23270 7135604 YP_002425123.1 CDS cyoD NC_011761.1 566052 566408 D identified by similarity to SP:P18403; cytochrome o ubiquinol oxidase subunit IV 566052..566408 Acidithiobacillus ferrooxidans ATCC 23270 7134980 YP_002425124.1 CDS cyoE-1 NC_011761.1 566437 567381 D identified by similarity to SP:P56938; match to protein family HMM PF01040; match to protein family HMM TIGR01473; protoheme IX farnesyltransferase 566437..567381 Acidithiobacillus ferrooxidans ATCC 23270 7135476 YP_002425125.1 CDS AFE_0637 NC_011761.1 567401 568603 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter 567401..568603 Acidithiobacillus ferrooxidans ATCC 23270 7135497 YP_002425126.1 CDS AFE_0636 NC_011761.1 568597 569430 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(568597..569430) Acidithiobacillus ferrooxidans ATCC 23270 7136303 YP_002425127.1 CDS greA NC_011761.1 569442 569918 R identified by match to protein family HMM PF01272; match to protein family HMM PF03449; match to protein family HMM TIGR01462; transcription elongation factor GreA complement(569442..569918) Acidithiobacillus ferrooxidans ATCC 23270 7136829 YP_002425128.1 CDS carB NC_011761.1 569915 573154 R identified by similarity to SP:P00968; match to protein family HMM PF00289; match to protein family HMM PF02142; match to protein family HMM PF02222; match to protein family HMM PF02655; match to protein family HMM PF02786; match to protein family HMM PF02787; match to protein family HMM TIGR01369; carbamoyl-phosphate synthase large subunit complement(569915..573154) Acidithiobacillus ferrooxidans ATCC 23270 7134101 YP_002425129.1 CDS carA NC_011761.1 573147 574289 R identified by similarity to SP:P00907; match to protein family HMM PF00117; match to protein family HMM PF00988; match to protein family HMM TIGR01368; carbamoyl-phosphate synthase small subunit complement(573147..574289) Acidithiobacillus ferrooxidans ATCC 23270 7134835 YP_002425130.1 CDS AFE_0641 NC_011761.1 574524 575210 D identified by glimmer; putative; hypothetical protein 574524..575210 Acidithiobacillus ferrooxidans ATCC 23270 7134903 YP_002425131.1 CDS thiS NC_011761.1 575314 575514 D identified by match to protein family HMM PF02597; match to protein family HMM TIGR01683; thiamine biosynthesis protein ThiS 575314..575514 Acidithiobacillus ferrooxidans ATCC 23270 7136681 YP_002425132.1 CDS thiG NC_011761.1 575559 576341 D identified by match to protein family HMM PF05690; thiamin biosynthesis protein ThiG 575559..576341 Acidithiobacillus ferrooxidans ATCC 23270 7136634 YP_002425133.1 CDS AFE_0644 NC_011761.1 576322 576912 D identified by glimmer; putative; hypothetical protein 576322..576912 Acidithiobacillus ferrooxidans ATCC 23270 7134391 YP_002425134.1 CDS mpl NC_011761.1 576924 578291 D identified by similarity to SP:P37773; match to protein family HMM PF01225; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01081; UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl- meso-diaminopimelate ligase 576924..578291 Acidithiobacillus ferrooxidans ATCC 23270 7135887 YP_002425135.1 CDS AFE_0647 NC_011761.1 578323 578940 D identified by match to protein family HMM PF02441; match to protein family HMM TIGR00421; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 578323..578940 Acidithiobacillus ferrooxidans ATCC 23270 7136818 YP_002425136.1 CDS AFE_0646 NC_011761.1 578873 579724 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(578873..579724) Acidithiobacillus ferrooxidans ATCC 23270 7134030 YP_002425137.1 CDS AFE_0648 NC_011761.1 579724 580860 R identified by similarity to GB:AAN65776.1; match to protein family HMM PF02405; match to protein family HMM TIGR00056; ABC transporter permease complement(579724..580860) Acidithiobacillus ferrooxidans ATCC 23270 7137019 YP_002425138.1 CDS AFE_0650 NC_011761.1 580905 581408 D identified by similarity to PIR:H83630; hypothetical protein 580905..581408 Acidithiobacillus ferrooxidans ATCC 23270 7135560 YP_002425139.1 CDS AFE_0649 NC_011761.1 581353 582105 R identified by match to protein family HMM PF03372; endonuclease/exonuclease/phosphatase family protein complement(581353..582105) Acidithiobacillus ferrooxidans ATCC 23270 7134868 YP_002425140.1 CDS AFE_0651 NC_011761.1 582122 582472 R identified by glimmer; putative; hypothetical protein complement(582122..582472) Acidithiobacillus ferrooxidans ATCC 23270 7135478 YP_002425141.1 CDS moeB NC_011761.1 582469 583224 R identified by similarity to SP:P12282; match to protein family HMM PF00899; match to protein family HMM PF05237; molybdopterin biosynthesis protein MoeB complement(582469..583224) Acidithiobacillus ferrooxidans ATCC 23270 7136211 YP_002425142.1 CDS AFE_0653 NC_011761.1 583361 584587 R identified by similarity to GB:CAD85317.1; hypothetical protein complement(583361..584587) Acidithiobacillus ferrooxidans ATCC 23270 7135562 YP_002425143.1 CDS AFE_0654 NC_011761.1 584496 587003 R identified by match to protein family HMM PF02687; ABC transporter permease complement(584496..587003) Acidithiobacillus ferrooxidans ATCC 23270 7135925 YP_002425144.1 CDS AFE_0655 NC_011761.1 587000 587674 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(587000..587674) Acidithiobacillus ferrooxidans ATCC 23270 7136629 YP_002425145.1 CDS trx NC_011761.1 588124 588450 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 588124..588450 Acidithiobacillus ferrooxidans ATCC 23270 7136032 YP_002425146.1 CDS rho NC_011761.1 588567 589823 D identified by match to protein family HMM PF00006; match to protein family HMM PF07497; match to protein family HMM PF07498; match to protein family HMM PF08206; match to protein family HMM TIGR00767; transcription termination factor Rho 588567..589823 Acidithiobacillus ferrooxidans ATCC 23270 7136825 YP_002425147.1 CDS rpmE NC_011761.1 589898 590104 D identified by similarity to SP:P02432; match to protein family HMM PF01197; match to protein family HMM TIGR00105; 50S ribosomal protein L31 589898..590104 Acidithiobacillus ferrooxidans ATCC 23270 7134172 YP_002425148.1 CDS AFE_0660 NC_011761.1 590111 591349 D identified by similarity to SP:O30808; match to protein family HMM PF00390; match to protein family HMM PF03949; malic enzyme family protein 590111..591349 Acidithiobacillus ferrooxidans ATCC 23270 7137101 YP_002425149.1 CDS AFE_0661 NC_011761.1 591356 592411 D identified by similarity to GB:AAN69743.1; match to protein family HMM PF01594; hypothetical protein 591356..592411 Acidithiobacillus ferrooxidans ATCC 23270 7135502 YP_002425150.1 CDS ilvD-2 NC_011761.1 592517 594358 D identified by similarity to SP:P51785; match to protein family HMM PF00920; match to protein family HMM TIGR00110; dihydroxy-acid dehydratase 592517..594358 Acidithiobacillus ferrooxidans ATCC 23270 7137288 YP_002425151.1 CDS AFE_0663 NC_011761.1 594365 595321 D identified by similarity to GB:BAC50332.1; match to protein family HMM PF01936; hypothetical protein 594365..595321 Acidithiobacillus ferrooxidans ATCC 23270 7136857 YP_002425152.1 CDS argA NC_011761.1 595336 596643 R catalyzes the formation of N-acetyl-L-glutamate from L-glutamate and acetyl-CoA in arginine biosynthesis; N-acetylglutamate synthase complement(595336..596643) Acidithiobacillus ferrooxidans ATCC 23270 7136396 YP_002425153.1 CDS AFE_0665 NC_011761.1 596659 596970 R identified by match to protein family HMM PF01722; BolA family protein complement(596659..596970) Acidithiobacillus ferrooxidans ATCC 23270 7134907 YP_002425154.1 CDS AFE_0666 NC_011761.1 596967 597296 R identified by match to protein family HMM PF03795; YCII-related domain-containing protein complement(596967..597296) Acidithiobacillus ferrooxidans ATCC 23270 7136435 YP_002425155.1 CDS ispZ NC_011761.1 597352 597909 R identified by similarity to SP:P95745; match to protein family HMM PF04279; match to protein family HMM TIGR00997; intracellular septation protein A complement(597352..597909) Acidithiobacillus ferrooxidans ATCC 23270 7135804 YP_002425156.1 CDS AFE_0668 NC_011761.1 597972 598835 D identified by similarity to GB:CAD86126.1; match to protein family HMM PF05673; hypothetical protein 597972..598835 Acidithiobacillus ferrooxidans ATCC 23270 7135395 YP_002425157.1 CDS AFE_0669 NC_011761.1 598920 599723 R identified by match to protein family HMM PF00459; inositol monophosphate family protein complement(598920..599723) Acidithiobacillus ferrooxidans ATCC 23270 7135704 YP_002425158.1 CDS AFE_0670 NC_011761.1 599805 600575 D identified by match to protein family HMM PF00588; match to protein family HMM TIGR00050; TrmH family RNA methyltransferase 599805..600575 Acidithiobacillus ferrooxidans ATCC 23270 7135986 YP_002425159.1 CDS cysE-2 NC_011761.1 600620 601369 D identified by similarity to SP:Q06750; match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine O-acetyltransferase 600620..601369 Acidithiobacillus ferrooxidans ATCC 23270 7134643 YP_002425160.1 CDS iscR NC_011761.1 601415 601903 D identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; iron-sulfur cluster assembly transcription factor IscR 601415..601903 Acidithiobacillus ferrooxidans ATCC 23270 7134428 YP_002425161.1 CDS iscS-3 NC_011761.1 601965 603188 D identified by similarity to SP:P39171; match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR02006; cysteine desulfurase IscS 601965..603188 Acidithiobacillus ferrooxidans ATCC 23270 7134377 YP_002425162.1 CDS iscU NC_011761.1 603213 603644 D identified by match to protein family HMM PF01592; match to protein family HMM TIGR01999; FeS cluster assembly scaffold protein IscU 603213..603644 Acidithiobacillus ferrooxidans ATCC 23270 7135205 YP_002425163.1 CDS iscA NC_011761.1 603654 603977 D identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; match to protein family HMM TIGR02011; iron-sulfur cluster assembly protein IscA 603654..603977 Acidithiobacillus ferrooxidans ATCC 23270 7134820 YP_002425164.1 CDS hscB NC_011761.1 604049 604594 D identified by similarity to SP:P36540; match to protein family HMM PF00226; match to protein family HMM PF07743; match to protein family HMM TIGR00714; co-chaperone Hsc20 604049..604594 Acidithiobacillus ferrooxidans ATCC 23270 7135061 YP_002425165.1 CDS hscA NC_011761.1 604628 606493 D involved in the maturation of iron-sulfur cluster-containing proteins; chaperone protein HscA 604628..606493 Acidithiobacillus ferrooxidans ATCC 23270 7136860 YP_002425166.1 CDS fdx NC_011761.1 606494 606832 D identified by similarity to SP:P25528; match to protein family HMM PF00111; match to protein family HMM TIGR02007; ferredoxin, 2Fe-2S 606494..606832 Acidithiobacillus ferrooxidans ATCC 23270 7136445 YP_002425167.1 CDS AFE_0679 NC_011761.1 606832 607026 D identified by similarity to SP:Q51384; match to protein family HMM PF04384; match to protein family HMM TIGR03412; hypothetical protein 606832..607026 Acidithiobacillus ferrooxidans ATCC 23270 7136292 YP_002425168.1 CDS trmU NC_011761.1 607040 608098 D identified by match to protein family HMM PF03054; match to protein family HMM PF06508; match to protein family HMM TIGR00420; tRNA (5-methyl aminomethyl-2-thiouridylate)-methyltransferase 607040..608098 Acidithiobacillus ferrooxidans ATCC 23270 7135795 YP_002425169.1 CDS AFE_0681 NC_011761.1 608117 609016 R identified by match to protein family HMM PF01734; patatin-like phospholipase family protein complement(608117..609016) Acidithiobacillus ferrooxidans ATCC 23270 7136616 YP_002425170.1 CDS AFE_0682 NC_011761.1 609219 609326 D identified by glimmer; putative; hypothetical protein 609219..609326 Acidithiobacillus ferrooxidans ATCC 23270 7135392 YP_002425171.1 CDS AFE_0683 NC_011761.1 609339 611693 D identified by similarity to SP:Q47281; match to protein family HMM PF00271; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463; type I restriction-modification system, R subunit 609339..611693 Acidithiobacillus ferrooxidans ATCC 23270 7135178 YP_002425172.1 CDS AFE_0684 NC_011761.1 611690 613159 D identified by similarity to SP:Q47282; match to protein family HMM PF02384; type I restriction-modification system, M subunit 611690..613159 Acidithiobacillus ferrooxidans ATCC 23270 7136796 YP_002425173.1 CDS AFE_0685 NC_011761.1 613165 614139 D identified by match to protein family HMM PF05012; match to protein family HMM TIGR01550; death-on-curing family protein 613165..614139 Acidithiobacillus ferrooxidans ATCC 23270 7137312 YP_002425174.1 CDS AFE_0686 NC_011761.1 614145 615830 D identified by similarity to SP:P19704; match to protein family HMM PF01420; type I restriction-modification system subunit S 614145..615830 Acidithiobacillus ferrooxidans ATCC 23270 7134267 YP_002425175.1 CDS AFE_0687 NC_011761.1 616123 617682 D identified by glimmer; putative; hypothetical protein 616123..617682 Acidithiobacillus ferrooxidans ATCC 23270 7136425 YP_002425176.1 CDS AFE_0688 NC_011761.1 617998 618180 R identified by glimmer; putative; hypothetical protein complement(617998..618180) Acidithiobacillus ferrooxidans ATCC 23270 7134560 YP_002425177.1 CDS AFE_0689 NC_011761.1 618147 618707 D transposase, degenerate 618147..618707 Acidithiobacillus ferrooxidans ATCC 23270 7135252 YP_002425178.1 CDS fdhD-2 NC_011761.1 618716 619573 R identified by match to protein family HMM PF02634; match to protein family HMM TIGR00129; formate dehydrogenase family accessory protein FdhD complement(618716..619573) Acidithiobacillus ferrooxidans ATCC 23270 7137190 YP_002425179.1 CDS AFE_0691 NC_011761.1 619543 619782 R identified by similarity to GB:AAM37336.1; hypothetical protein complement(619543..619782) Acidithiobacillus ferrooxidans ATCC 23270 7134668 YP_002425180.1 CDS AFE_0692 NC_011761.1 619832 622108 R identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01701; oxidoreductase molybdopterin subunit complement(619832..622108) Acidithiobacillus ferrooxidans ATCC 23270 7136692 YP_002425181.1 CDS AFE_0693 NC_011761.1 622336 624267 D identified by match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; sigma-54 dependent transcriptional regulator 622336..624267 Acidithiobacillus ferrooxidans ATCC 23270 7134770 YP_002425182.1 CDS AFE_0695 NC_011761.1 624279 624497 D identified by glimmer; putative; hypothetical protein 624279..624497 Acidithiobacillus ferrooxidans ATCC 23270 7136777 YP_002425183.1 CDS AFE_0694 NC_011761.1 624443 624556 R identified by glimmer; putative; hypothetical protein complement(624443..624556) Acidithiobacillus ferrooxidans ATCC 23270 7135494 YP_002425184.1 CDS gfa NC_011761.1 624681 625265 D catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein 624681..625265 Acidithiobacillus ferrooxidans ATCC 23270 7134654 YP_002425185.1 CDS AFE_0697 NC_011761.1 625364 626473 D identified by similarity to SP:P72324; match to protein family HMM PF00107; match to protein family HMM PF08240; match to protein family HMM TIGR02818; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 625364..626473 Acidithiobacillus ferrooxidans ATCC 23270 7137307 YP_002425186.1 CDS fghA NC_011761.1 626473 627327 D identified by match to protein family HMM PF00756; match to protein family HMM TIGR02821; S-formylglutathione hydrolase 626473..627327 Acidithiobacillus ferrooxidans ATCC 23270 7135090 YP_002425187.1 CDS cysB NC_011761.1 627352 628314 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; sulfur assimilation LysR family transcriptional regulator complement(627352..628314) Acidithiobacillus ferrooxidans ATCC 23270 7135764 YP_002425188.1 CDS hupR NC_011761.1 628370 629818 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; hydrogenase sigma-54 dependent DNA-binding response regulator complement(628370..629818) Acidithiobacillus ferrooxidans ATCC 23270 7136399 YP_002425189.1 CDS hybA NC_011761.1 630000 630962 D identified by match to protein family HMM PF01058; hydrogenase-2, small subunit 630000..630962 Acidithiobacillus ferrooxidans ATCC 23270 7134119 YP_002425190.1 CDS hybC NC_011761.1 631013 632611 D identified by match to protein family HMM PF00374; hydrogenase-2, large subunit 631013..632611 Acidithiobacillus ferrooxidans ATCC 23270 7135603 YP_002425191.1 CDS AFE_0703 NC_011761.1 632701 633021 D identified by similarity to SP:P00264; hypothetical protein 632701..633021 Acidithiobacillus ferrooxidans ATCC 23270 7135940 YP_002425192.1 CDS AFE_0704 NC_011761.1 633040 633372 D identified by glimmer; putative; hypothetical protein 633040..633372 Acidithiobacillus ferrooxidans ATCC 23270 7134117 YP_002425193.1 CDS AFE_0705 NC_011761.1 633375 633848 D identified by match to protein family HMM TIGR00072; hydrogenase maturation protease 633375..633848 Acidithiobacillus ferrooxidans ATCC 23270 7136087 YP_002425194.1 CDS AFE_0706 NC_011761.1 633845 634174 D identified by glimmer; putative; hypothetical protein 633845..634174 Acidithiobacillus ferrooxidans ATCC 23270 7137118 YP_002425195.1 CDS AFE_0707 NC_011761.1 634273 635253 D identified by similarity to PIR:AI1892; hypothetical protein 634273..635253 Acidithiobacillus ferrooxidans ATCC 23270 7135360 YP_002425196.1 CDS AFE_0708 NC_011761.1 635278 635505 D identified by glimmer; putative; hypothetical protein 635278..635505 Acidithiobacillus ferrooxidans ATCC 23270 7135089 YP_002425197.1 CDS AFE_0709 NC_011761.1 635534 635758 D hypothetical protein 635534..635758 Acidithiobacillus ferrooxidans ATCC 23270 7134419 YP_002425198.1 CDS AFE_0710 NC_011761.1 635775 636665 D identified by match to protein family HMM PF00355; match to protein family HMM PF01106; iron-sulfur cluster-binding protein, Rieske family 635775..636665 Acidithiobacillus ferrooxidans ATCC 23270 7136397 YP_002425199.1 CDS AFE_0711 NC_011761.1 636658 637854 D identified by match to protein family HMM PF01436; NHL repeat protein 636658..637854 Acidithiobacillus ferrooxidans ATCC 23270 7135277 YP_002425200.1 CDS hypF NC_011761.1 637851 640262 D identified by similarity to SP:P30131; match to protein family HMM PF00708; match to protein family HMM PF01300; match to protein family HMM PF07503; match to protein family HMM TIGR00143; [NiFe] hydrogenase maturation protein HypF 637851..640262 Acidithiobacillus ferrooxidans ATCC 23270 7134832 YP_002425201.1 CDS hypC-1 NC_011761.1 640253 640546 D identified by similarity to SP:P24191; match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC 640253..640546 Acidithiobacillus ferrooxidans ATCC 23270 7135807 YP_002425202.1 CDS gmhA NC_011761.1 640565 641260 D identified by similarity to SP:Q9AGY7; match to protein family HMM TIGR00441; phosphoheptose isomerase 640565..641260 Acidithiobacillus ferrooxidans ATCC 23270 7134729 YP_002425203.1 CDS hypD-1 NC_011761.1 641244 642389 D identified by similarity to SP:P24192; match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD 641244..642389 Acidithiobacillus ferrooxidans ATCC 23270 7134450 YP_002425204.1 CDS hypE NC_011761.1 642389 643447 D identified by similarity to SP:P40595; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR02124; hydrogenase expression/formation protein HypE 642389..643447 Acidithiobacillus ferrooxidans ATCC 23270 7135191 YP_002425205.1 CDS hypA-1 NC_011761.1 643461 643790 D identified by similarity to SP:P24189; match to protein family HMM PF01155; hydrogenase nickel incorporation protein HypA 643461..643790 Acidithiobacillus ferrooxidans ATCC 23270 7134601 YP_002425206.1 CDS hypB-1 NC_011761.1 643935 644708 D identified by similarity to SP:P24190; match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase nickel incorporation protein HypB 643935..644708 Acidithiobacillus ferrooxidans ATCC 23270 7134795 YP_002425207.1 CDS AFE_0719 NC_011761.1 644734 646143 D identified by match to protein family HMM PF00324; amino acid permease family protein 644734..646143 Acidithiobacillus ferrooxidans ATCC 23270 7136601 YP_002425208.1 CDS AFE_0720 NC_011761.1 646208 647458 D identified by match to protein family HMM PF01266; FAD-dependent oxidoreductase 646208..647458 Acidithiobacillus ferrooxidans ATCC 23270 7134657 YP_002425209.1 CDS AFE_0721 NC_011761.1 647543 647941 D identified by similarity to PIR:A97389; hypothetical protein 647543..647941 Acidithiobacillus ferrooxidans ATCC 23270 7135435 YP_002425210.1 CDS ilvA NC_011761.1 647956 649476 R identified by similarity to SP:P04968; match to protein family HMM PF00291; match to protein family HMM PF00585; match to protein family HMM TIGR01124; threonine ammonia-lyase, biosynthetic complement(647956..649476) Acidithiobacillus ferrooxidans ATCC 23270 7136100 YP_002425211.1 CDS AFE_0723 NC_011761.1 649473 649844 R identified by match to protein family HMM PF00126; helix-turn-helix domain-containing protein complement(649473..649844) Acidithiobacillus ferrooxidans ATCC 23270 7136392 YP_002425212.1 CDS AFE_0724 NC_011761.1 649841 650806 R identified by match to protein family HMM PF00561; alpha/beta hydrolase complement(649841..650806) Acidithiobacillus ferrooxidans ATCC 23270 7134051 YP_002425213.1 CDS AFE_0725 NC_011761.1 650803 651012 R hypothetical protein complement(650803..651012) Acidithiobacillus ferrooxidans ATCC 23270 7135924 YP_002425214.1 CDS AFE_0726 NC_011761.1 651358 652134 D identified by similarity to GB:AAQ58336.1; hypothetical protein 651358..652134 Acidithiobacillus ferrooxidans ATCC 23270 7136850 YP_002425215.1 CDS AFE_0727 NC_011761.1 652134 653033 D identified by similarity to SP:Q59601; match to protein family HMM PF01553; match to protein family HMM TIGR00530; 1-acyl-sn-glycerol-3-phosphate acyltransferase 652134..653033 Acidithiobacillus ferrooxidans ATCC 23270 7134105 YP_002425216.1 CDS hemE NC_011761.1 653053 654117 R identified by similarity to SP:P29680; match to protein family HMM PF01208; match to protein family HMM TIGR01464; uroporphyrinogen decarboxylase complement(653053..654117) Acidithiobacillus ferrooxidans ATCC 23270 7136994 YP_002425217.1 CDS gltD NC_011761.1 654121 655518 R identified by similarity to SP:P09832; match to protein family HMM PF00070; match to protein family HMM PF07992; match to protein family HMM TIGR01318; glutamate synthase, small subunit complement(654121..655518) Acidithiobacillus ferrooxidans ATCC 23270 7136755 YP_002425218.1 CDS gltB NC_011761.1 655542 659969 R identified by similarity to SP:P09831; match to protein family HMM PF00310; match to protein family HMM PF01493; match to protein family HMM PF01645; match to protein family HMM PF04898; glutamate synthase, large subunit complement(655542..659969) Acidithiobacillus ferrooxidans ATCC 23270 7134392 YP_002425219.1 CDS AFE_0731 NC_011761.1 660107 661306 R identified by similarity to SP:Q8XV63; match to protein family HMM PF01966; match to protein family HMM TIGR01353; deoxyguanosinetriphosphate triphosphohydrolase complement(660107..661306) Acidithiobacillus ferrooxidans ATCC 23270 7134939 YP_002425220.1 CDS thyX NC_011761.1 661272 662072 R identified by match to protein family HMM PF02511; match to protein family HMM TIGR02170; thymidylate synthase, flavin-dependent complement(661272..662072) Acidithiobacillus ferrooxidans ATCC 23270 7135331 YP_002425221.1 CDS aroB NC_011761.1 662107 663201 R identified by similarity to SP:P07639; match to protein family HMM PF01761; match to protein family HMM TIGR01357; 3-dehydroquinate synthase complement(662107..663201) Acidithiobacillus ferrooxidans ATCC 23270 7134504 YP_002425222.1 CDS aroK NC_011761.1 663307 663846 R identified by similarity to SP:P24167; match to protein family HMM PF01202; shikimate kinase complement(663307..663846) Acidithiobacillus ferrooxidans ATCC 23270 7137122 YP_002425223.1 CDS AFE_0735 NC_011761.1 663843 666197 R identified by similarity to SP:P34750; match to protein family HMM PF00263; match to protein family HMM PF03958; match to protein family HMM PF07660; match to protein family HMM TIGR02515; fimbrial assembly protein PilQ complement(663843..666197) Acidithiobacillus ferrooxidans ATCC 23270 7134851 YP_002425224.1 CDS AFE_0736 NC_011761.1 666242 666790 R identified by similarity to GB:AAA93089.1; type 4 fimbrial biogenesis protein PilP complement(666242..666790) Acidithiobacillus ferrooxidans ATCC 23270 7136129 YP_002425225.1 CDS AFE_0737 NC_011761.1 666787 667440 R identified by match to protein family HMM PF04350; fimbrial assembly protein PilO complement(666787..667440) Acidithiobacillus ferrooxidans ATCC 23270 7136174 YP_002425226.1 CDS AFE_0738 NC_011761.1 667437 668030 R identified by match to protein family HMM PF05137; type IV pilus biogenesis protein PilN complement(667437..668030) Acidithiobacillus ferrooxidans ATCC 23270 7134223 YP_002425227.1 CDS AFE_0739 NC_011761.1 668027 669091 R identified by similarity to PIR:S77726; match to protein family HMM TIGR01175; type IV pilus assembly protein PilM complement(668027..669091) Acidithiobacillus ferrooxidans ATCC 23270 7137221 YP_002425228.1 CDS AFE_0740 NC_011761.1 669137 669307 D identified by glimmer; putative; hypothetical protein 669137..669307 Acidithiobacillus ferrooxidans ATCC 23270 7134880 YP_002425229.1 CDS AFE_0741 NC_011761.1 669319 669852 D identified by match to protein family HMM PF00383; cytidine and deoxycytidylate deaminase family protein 669319..669852 Acidithiobacillus ferrooxidans ATCC 23270 7135674 YP_002425230.1 CDS AFE_0742 NC_011761.1 669849 670280 D identified by match to protein family HMM PF01894; match to protein family HMM TIGR00149; hypothetical protein 669849..670280 Acidithiobacillus ferrooxidans ATCC 23270 7135393 YP_002425231.1 CDS AFE_0743 NC_011761.1 670280 670705 D hypothetical protein 670280..670705 Acidithiobacillus ferrooxidans ATCC 23270 7136149 YP_002425232.1 CDS AFE_0744 NC_011761.1 670768 672306 D identified by match to protein family HMM PF00488; MutS domain-containing protein 670768..672306 Acidithiobacillus ferrooxidans ATCC 23270 7134196 YP_002425233.1 CDS ilvB NC_011761.1 672435 674180 D identified by match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; match to protein family HMM TIGR00118; acetolactate synthase large subunit 672435..674180 Acidithiobacillus ferrooxidans ATCC 23270 7134933 YP_002425234.1 CDS ilvN NC_011761.1 674183 674668 D identified by similarity to SP:P00894; match to protein family HMM PF01842; match to protein family HMM TIGR00119; acetolactate synthase small subunit 674183..674668 Acidithiobacillus ferrooxidans ATCC 23270 7136040 YP_002425235.1 CDS ilvC NC_011761.1 674720 675736 D identified by match to protein family HMM PF01450; match to protein family HMM PF02629; match to protein family HMM PF07991; match to protein family HMM TIGR00465; ketol-acid reductoisomerase 674720..675736 Acidithiobacillus ferrooxidans ATCC 23270 7136485 YP_002425236.1 CDS psd NC_011761.1 675855 676517 D catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase 675855..676517 Acidithiobacillus ferrooxidans ATCC 23270 7137004 YP_002425237.1 CDS pssA NC_011761.1 676514 677266 D identified by match to protein family HMM PF01066; match to protein family HMM TIGR00473; CDP-diacylglycerol--serine O-phosphatidyltransferase 676514..677266 Acidithiobacillus ferrooxidans ATCC 23270 7136049 YP_002425238.1 CDS AFE_0749 NC_011761.1 677242 679095 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate kinase complement(677242..679095) Acidithiobacillus ferrooxidans ATCC 23270 7134364 YP_002425239.1 CDS AFE_0751 NC_011761.1 679283 679708 D identified by match to protein family HMM PF00582; universal stress family protein 679283..679708 Acidithiobacillus ferrooxidans ATCC 23270 7136672 YP_002425240.1 CDS AFE_0752 NC_011761.1 679797 680222 R NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase complement(679797..680222) Acidithiobacillus ferrooxidans ATCC 23270 7135558 YP_002425241.1 CDS smc NC_011761.1 680283 683735 D identified by similarity to GB:CAD66591.1; match to protein family HMM PF02463; match to protein family HMM TIGR02168; chromosome segregation protein SMC 680283..683735 Acidithiobacillus ferrooxidans ATCC 23270 7134877 YP_002425242.1 CDS AFE_0754 NC_011761.1 683810 683962 D identified by glimmer; putative; hypothetical protein 683810..683962 Acidithiobacillus ferrooxidans ATCC 23270 7136321 YP_002425243.1 CDS AFE_0755 NC_011761.1 683995 684963 D identified by glimmer; putative; hypothetical protein 683995..684963 Acidithiobacillus ferrooxidans ATCC 23270 7135081 YP_002425244.1 CDS AFE_0756 NC_011761.1 684969 685661 R identified by similarity to GB:AAN70712.1; match to protein family HMM PF00702; match to protein family HMM TIGR01488; match to protein family HMM TIGR01490; HAD-superfamily hydrolase complement(684969..685661) Acidithiobacillus ferrooxidans ATCC 23270 7134659 YP_002425245.1 CDS ligA NC_011761.1 685778 687793 D identified by similarity to SP:P15042; match to protein family HMM PF00533; match to protein family HMM PF00633; match to protein family HMM PF01653; match to protein family HMM PF03119; match to protein family HMM PF03120; match to protein family HMM TIGR00575; NAD-dependent DNA ligase 685778..687793 Acidithiobacillus ferrooxidans ATCC 23270 7134217 YP_002425246.1 CDS AFE_0758 NC_011761.1 687796 688311 D identified by match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1 subunit epsilon 687796..688311 Acidithiobacillus ferrooxidans ATCC 23270 7137237 YP_002425247.1 CDS AFE_0759 NC_011761.1 688328 688978 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; methyltransferase 688328..688978 Acidithiobacillus ferrooxidans ATCC 23270 7136502 YP_002425248.1 CDS AFE_0760 NC_011761.1 689122 689856 R identified by similarity to PIR:A64695; match to protein family HMM PF01863; hypothetical protein complement(689122..689856) Acidithiobacillus ferrooxidans ATCC 23270 7134250 YP_002425249.1 CDS AFE_0762 NC_011761.1 689944 690111 D identified by glimmer; putative; hypothetical protein 689944..690111 Acidithiobacillus ferrooxidans ATCC 23270 7134957 YP_002425250.1 CDS AFE_0761 NC_011761.1 690101 691051 R identified by similarity to GB:AAK50330.1; match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(690101..691051) Acidithiobacillus ferrooxidans ATCC 23270 7134943 YP_002425251.1 CDS AFE_0763 NC_011761.1 691285 693621 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 691285..693621 Acidithiobacillus ferrooxidans ATCC 23270 7135184 YP_002425252.1 CDS AFE_0764 NC_011761.1 693860 694654 D identified by similarity to GB:AAQ58180.1; match to protein family HMM PF01925; hypothetical protein 693860..694654 Acidithiobacillus ferrooxidans ATCC 23270 7137119 YP_002425253.1 CDS AFE_0765 NC_011761.1 694773 694886 D identified by glimmer; putative; hypothetical protein 694773..694886 Acidithiobacillus ferrooxidans ATCC 23270 7135935 YP_002425254.1 CDS AFE_0766 NC_011761.1 695116 695229 D identified by glimmer; putative; hypothetical protein 695116..695229 Acidithiobacillus ferrooxidans ATCC 23270 7136620 YP_002425255.1 CDS AFE_0767 NC_011761.1 695199 695345 D identified by glimmer; putative; hypothetical protein 695199..695345 Acidithiobacillus ferrooxidans ATCC 23270 7134854 YP_002425256.1 CDS AFE_0768 NC_011761.1 695389 696093 D identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 695389..696093 Acidithiobacillus ferrooxidans ATCC 23270 7136791 YP_002425257.1 CDS AFE_0769 NC_011761.1 696141 696539 D identified by match to protein family HMM PF02472; ExbD/TolR family biopolymer transport protein 696141..696539 Acidithiobacillus ferrooxidans ATCC 23270 7135415 YP_002425258.1 CDS AFE_0770 NC_011761.1 696716 697387 D identified by match to protein family HMM TIGR01352; TonB family protein 696716..697387 Acidithiobacillus ferrooxidans ATCC 23270 7135914 YP_002425259.1 CDS AFE_0771 NC_011761.1 697445 698869 D identified by match to protein family HMM PF02133; cytosine/purines/uracil/thiamine/allantoin permease family protein 697445..698869 Acidithiobacillus ferrooxidans ATCC 23270 7137139 YP_002425260.1 CDS AFE_0772 NC_011761.1 698866 700095 D identified by similarity to SP:P76641; match to protein family HMM PF01979; guanine deaminase 698866..700095 Acidithiobacillus ferrooxidans ATCC 23270 7136218 YP_002425261.1 CDS add NC_011761.1 700142 701185 D identified by similarity to SP:P22333; match to protein family HMM PF00962; match to protein family HMM TIGR01430; adenosine deaminase 700142..701185 Acidithiobacillus ferrooxidans ATCC 23270 7136787 YP_002425262.1 CDS AFE_0774 NC_011761.1 701209 702210 D phosphorylase 701209..702210 Acidithiobacillus ferrooxidans ATCC 23270 7135311 YP_002425263.1 CDS AFE_0775 NC_011761.1 702272 704530 D identified by similarity to SP:Q46799; match to protein family HMM PF01315; match to protein family HMM PF02738; xanthine dehydrogenase, molybdenum-binding subunit 702272..704530 Acidithiobacillus ferrooxidans ATCC 23270 7136836 YP_002425264.1 CDS AFE_0776 NC_011761.1 704533 704982 D identified by similarity to SP:P77165; match to protein family HMM PF00111; match to protein family HMM PF01799; xanthine dehydrogenase, iron-sulfur binding subunit 704533..704982 Acidithiobacillus ferrooxidans ATCC 23270 7136507 YP_002425265.1 CDS AFE_0777 NC_011761.1 704982 705848 D identified by similarity to SP:Q8X6C5; match to protein family HMM PF00941; xanthine dehydrogenase, FAD-binding protein 704982..705848 Acidithiobacillus ferrooxidans ATCC 23270 7135094 YP_002425266.1 CDS AFE_0778 NC_011761.1 705852 706436 D hypothetical protein 705852..706436 Acidithiobacillus ferrooxidans ATCC 23270 7134917 YP_002425267.1 CDS AFE_0779 NC_011761.1 706455 707546 D identified by similarity to SP:O87589; match to protein family HMM TIGR02714; cyanuric acid amidohydrolase 706455..707546 Acidithiobacillus ferrooxidans ATCC 23270 7136794 YP_002425268.1 CDS AFE_0780 NC_011761.1 707543 708484 D identified by similarity to GB:CAB41849.1; match to protein family HMM PF02625; xanthine dehydrogenase accessory factor 707543..708484 Acidithiobacillus ferrooxidans ATCC 23270 7136879 YP_002425269.1 CDS AFE_0781 NC_011761.1 708501 708701 D hypothetical protein 708501..708701 Acidithiobacillus ferrooxidans ATCC 23270 7135416 YP_002425270.1 CDS AFE_0782 NC_011761.1 708698 710095 D identified by match to protein family HMM PF01425; match to protein family HMM TIGR02715; amidohydrolase, AtzE family 708698..710095 Acidithiobacillus ferrooxidans ATCC 23270 7137254 YP_002425271.1 CDS AFE_0783 NC_011761.1 710055 710495 D identified by similarity to PIR:AD0396; hypothetical protein 710055..710495 Acidithiobacillus ferrooxidans ATCC 23270 7134093 YP_002425272.1 CDS AFE_0784 NC_011761.1 710504 711112 D identified by glimmer; putative; hypothetical protein 710504..711112 Acidithiobacillus ferrooxidans ATCC 23270 7135905 YP_002425273.1 CDS ggt NC_011761.1 711109 712728 D identified by match to protein family HMM PF01019; match to protein family HMM TIGR00066; gamma-glutamyltranspeptidase 711109..712728 Acidithiobacillus ferrooxidans ATCC 23270 7137110 YP_002425274.1 CDS AFE_0786 NC_011761.1 713160 713681 R identified by similarity to GB:AAG23392.1; match to protein family HMM PF01243; heme-utilization protein HutZ complement(713160..713681) Acidithiobacillus ferrooxidans ATCC 23270 7134446 YP_002425275.1 CDS AFE_0787 NC_011761.1 713734 714783 D identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 713734..714783 Acidithiobacillus ferrooxidans ATCC 23270 7134268 YP_002425276.1 CDS AFE_0788 NC_011761.1 714875 716194 D identified by similarity to GB:AAK81830.1; match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF04820; non-heme halogenase 714875..716194 Acidithiobacillus ferrooxidans ATCC 23270 7135548 YP_002425277.1 CDS AFE_0789 NC_011761.1 716197 717270 D identified by similarity to PIR:T30234; match to protein family HMM PF01042; dioxygenase 716197..717270 Acidithiobacillus ferrooxidans ATCC 23270 7136334 YP_002425278.1 CDS AFE_0790 NC_011761.1 717267 718070 D identified by match to protein family HMM PF01553; acyltransferase 717267..718070 Acidithiobacillus ferrooxidans ATCC 23270 7135404 YP_002425279.1 CDS AFE_0792 NC_011761.1 718067 718828 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 718067..718828 Acidithiobacillus ferrooxidans ATCC 23270 7135684 YP_002425280.1 CDS AFE_0791 NC_011761.1 718810 720156 R identified by match to protein family HMM PF00999; Na+/H+ antiporter complement(718810..720156) Acidithiobacillus ferrooxidans ATCC 23270 7134554 YP_002425281.1 CDS fabG NC_011761.1 720172 720894 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(720172..720894) Acidithiobacillus ferrooxidans ATCC 23270 7136725 YP_002425282.1 CDS AFE_0794 NC_011761.1 720887 721387 R identified by similarity to GB:CAD13953.1; hypothetical protein complement(720887..721387) Acidithiobacillus ferrooxidans ATCC 23270 7134206 YP_002425283.1 CDS AFE_0795 NC_011761.1 721378 722193 R identified by similarity to GB:AAM43220.1; hypothetical protein complement(721378..722193) Acidithiobacillus ferrooxidans ATCC 23270 7136583 YP_002425284.1 CDS AFE_0796 NC_011761.1 722206 723399 R FabB; beta-ketoacyl-ACP synthase I, KASI; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-ACP synthase complement(722206..723399) Acidithiobacillus ferrooxidans ATCC 23270 7134595 YP_002425285.1 CDS AFE_0797 NC_011761.1 723703 723969 D identified by similarity to SP:O67611; acyl carrier protein 723703..723969 Acidithiobacillus ferrooxidans ATCC 23270 7135956 YP_002425286.1 CDS AFE_0798 NC_011761.1 724043 726397 R hypothetical protein complement(724043..726397) Acidithiobacillus ferrooxidans ATCC 23270 7137125 YP_002425287.1 CDS AFE_0799 NC_011761.1 726394 726954 R identified by similarity to GB:CAD13958.1; hypothetical protein complement(726394..726954) Acidithiobacillus ferrooxidans ATCC 23270 7136110 YP_002425288.1 CDS AFE_0800 NC_011761.1 727128 727976 R identified by similarity to GB:CAD13959.1; hypothetical protein complement(727128..727976) Acidithiobacillus ferrooxidans ATCC 23270 7134544 YP_002425289.1 CDS AFE_0801 NC_011761.1 728048 728278 R identified by similarity to GB:CAD13960.1; hypothetical protein complement(728048..728278) Acidithiobacillus ferrooxidans ATCC 23270 7134766 YP_002425290.1 CDS AFE_0802 NC_011761.1 728355 729716 R identified by match to protein family HMM PF00501; AMP-binding protein complement(728355..729716) Acidithiobacillus ferrooxidans ATCC 23270 7135888 YP_002425291.1 CDS AFE_0803 NC_011761.1 729744 730439 R identified by similarity to GB:CAD13961.1; hypothetical protein complement(729744..730439) Acidithiobacillus ferrooxidans ATCC 23270 7134095 YP_002425292.1 CDS AFE_0804 NC_011761.1 730635 730967 R hypothetical protein complement(730635..730967) Acidithiobacillus ferrooxidans ATCC 23270 7135496 YP_002425293.1 CDS AFE_0805 NC_011761.1 731093 732637 R identified by match to protein family HMM PF03321; auxin-responsive GH3-like protein complement(731093..732637) Acidithiobacillus ferrooxidans ATCC 23270 7137092 YP_002425294.1 CDS AFE_0806 NC_011761.1 732634 735042 R identified by match to protein family HMM PF01804; penicillin amidase family protein complement(732634..735042) Acidithiobacillus ferrooxidans ATCC 23270 7134985 YP_002425295.1 CDS AFE_0807 NC_011761.1 735031 735168 D identified by glimmer; putative; hypothetical protein 735031..735168 Acidithiobacillus ferrooxidans ATCC 23270 7135329 YP_002425296.1 CDS AFE_0808 NC_011761.1 735209 736258 R identified by similarity to SP:P77324; match to protein family HMM PF00941; match to protein family HMM PF03450; oxidoreductase, FAD-binding subunit complement(735209..736258) Acidithiobacillus ferrooxidans ATCC 23270 7134751 YP_002425297.1 CDS AFE_0809 NC_011761.1 736258 738606 R identified by match to protein family HMM PF01315; match to protein family HMM PF02738; oxidoreductase, molybdopterin binding subunit complement(736258..738606) Acidithiobacillus ferrooxidans ATCC 23270 7135908 YP_002425298.1 CDS AFE_0810 NC_011761.1 738609 739136 R identified by similarity to SP:P19921; match to protein family HMM PF00111; match to protein family HMM PF01799; oxidoreductase, iron-sulfur binding subunit complement(738609..739136) Acidithiobacillus ferrooxidans ATCC 23270 7135534 YP_002425299.1 CDS AFE_0811 NC_011761.1 739221 739349 D identified by glimmer; putative; hypothetical protein 739221..739349 Acidithiobacillus ferrooxidans ATCC 23270 7136594 YP_002425300.1 CDS AFE_0812 NC_011761.1 739384 739593 R identified by glimmer; putative; hypothetical protein complement(739384..739593) Acidithiobacillus ferrooxidans ATCC 23270 7134610 YP_002425301.1 CDS AFE_0813 NC_011761.1 739817 741214 R identified by match to protein family HMM PF07690; major facilitator family transporter complement(739817..741214) Acidithiobacillus ferrooxidans ATCC 23270 7135169 YP_002425302.1 CDS AFE_0814 NC_011761.1 741520 742905 R identified by match to protein family HMM PF00654; voltage-gated chloride channel complement(741520..742905) Acidithiobacillus ferrooxidans ATCC 23270 7134539 YP_002425303.1 CDS AFE_0815 NC_011761.1 742919 744691 R identified by match to protein family HMM PF00571; match to protein family HMM PF00654; voltage-gated chloride channel complement(742919..744691) Acidithiobacillus ferrooxidans ATCC 23270 7134596 YP_002425304.1 CDS AFE_0817 NC_011761.1 744862 745752 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 744862..745752 Acidithiobacillus ferrooxidans ATCC 23270 7135647 YP_002425305.1 CDS AFE_0816 NC_011761.1 745736 745876 R identified by glimmer; putative; hypothetical protein complement(745736..745876) Acidithiobacillus ferrooxidans ATCC 23270 7137303 YP_002425306.1 CDS AFE_0818 NC_011761.1 745902 748331 R identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01647; plasma-membrane proton-efflux P-type ATPase complement(745902..748331) Acidithiobacillus ferrooxidans ATCC 23270 7136956 YP_002425307.1 CDS AFE_0819 NC_011761.1 748692 748853 D identified by glimmer; putative; hypothetical protein 748692..748853 Acidithiobacillus ferrooxidans ATCC 23270 7137199 YP_002425308.1 CDS AFE_0820 NC_011761.1 749367 749567 R identified by glimmer; putative; hypothetical protein complement(749367..749567) Acidithiobacillus ferrooxidans ATCC 23270 7134592 YP_002425309.1 CDS AFE_0821 NC_011761.1 749485 749961 R hypothetical protein complement(749485..749961) Acidithiobacillus ferrooxidans ATCC 23270 7137080 YP_002425310.1 CDS AFE_0823 NC_011761.1 749954 750226 D identified by glimmer; putative; hypothetical protein 749954..750226 Acidithiobacillus ferrooxidans ATCC 23270 7136931 YP_002425311.1 CDS AFE_0822 NC_011761.1 750211 750522 R identified by glimmer; putative; hypothetical protein complement(750211..750522) Acidithiobacillus ferrooxidans ATCC 23270 7134996 YP_002425312.1 CDS AFE_0824 NC_011761.1 750515 750805 R hypothetical protein complement(750515..750805) Acidithiobacillus ferrooxidans ATCC 23270 7134367 YP_002425313.1 CDS AFE_0825 NC_011761.1 750844 750993 D identified by glimmer; putative; hypothetical protein 750844..750993 Acidithiobacillus ferrooxidans ATCC 23270 7134677 YP_002425314.1 CDS AFE_0826 NC_011761.1 751066 752628 D identified by match to protein family HMM PF02384; type I restriction-modification system, M subunit 751066..752628 Acidithiobacillus ferrooxidans ATCC 23270 7136676 YP_002425315.1 CDS AFE_0827 NC_011761.1 752625 754205 D identified by similarity to SP:O50224; ATP-dependent DNA helicase 752625..754205 Acidithiobacillus ferrooxidans ATCC 23270 7134039 YP_002425316.1 CDS AFE_0828 NC_011761.1 754202 755269 D identified by similarity to GB:AAM31899.1; hypothetical protein 754202..755269 Acidithiobacillus ferrooxidans ATCC 23270 7137095 YP_002425317.1 CDS AFE_0829 NC_011761.1 755229 756458 D identified by match to protein family HMM PF01420; type I restriction-modification system subunit S 755229..756458 Acidithiobacillus ferrooxidans ATCC 23270 7134849 YP_002425318.1 CDS AFE_0831 NC_011761.1 756547 757095 D identified by glimmer; putative; hypothetical protein 756547..757095 Acidithiobacillus ferrooxidans ATCC 23270 7136072 YP_002425319.1 CDS AFE_0830 NC_011761.1 757067 757255 R identified by glimmer; putative; hypothetical protein complement(757067..757255) Acidithiobacillus ferrooxidans ATCC 23270 7134968 YP_002425320.1 CDS AFE_0832 NC_011761.1 757229 758089 D hypothetical protein 757229..758089 Acidithiobacillus ferrooxidans ATCC 23270 7137272 YP_002425321.1 CDS AFE_0833 NC_011761.1 758164 759162 R identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family complement(758164..759162) Acidithiobacillus ferrooxidans ATCC 23270 7135520 YP_002425322.1 CDS AFE_0834 NC_011761.1 759155 760096 R identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family complement(759155..760096) Acidithiobacillus ferrooxidans ATCC 23270 7134662 YP_002425323.1 CDS AFE_0835 NC_011761.1 760093 761337 R identified by match to protein family HMM PF00589; match to protein family HMM PF02899; site-specific recombinase, phage integrase family complement(760093..761337) Acidithiobacillus ferrooxidans ATCC 23270 7135474 YP_002425324.1 CDS AFE_0836 NC_011761.1 761560 762087 D identified by similarity to GB:AAK47199.1; transposase, degenerate 761560..762087 Acidithiobacillus ferrooxidans ATCC 23270 7134344 YP_002425325.1 CDS AFE_0837 NC_011761.1 762091 762930 D identified by similarity to SP:P45754; general secretion pathway protein A 762091..762930 Acidithiobacillus ferrooxidans ATCC 23270 7136686 YP_002425326.1 CDS AFE_0838 NC_011761.1 762941 763144 D identified by glimmer; putative; hypothetical protein 762941..763144 Acidithiobacillus ferrooxidans ATCC 23270 7134456 YP_002425327.1 CDS AFE_0839 NC_011761.1 763384 763509 R identified by glimmer; putative; hypothetical protein complement(763384..763509) Acidithiobacillus ferrooxidans ATCC 23270 7134346 YP_002425328.1 CDS AFE_0840 NC_011761.1 763539 766352 D identified by glimmer; putative; hypothetical protein 763539..766352 Acidithiobacillus ferrooxidans ATCC 23270 7134495 YP_002425329.1 CDS AFE_0841 NC_011761.1 766358 769279 D identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction-modification system, R subunit 766358..769279 Acidithiobacillus ferrooxidans ATCC 23270 7134702 YP_002425330.1 CDS AFE_0842 NC_011761.1 769297 769632 D identified by similarity to PIR:B82823; match to protein family HMM PF01863; hypothetical protein 769297..769632 Acidithiobacillus ferrooxidans ATCC 23270 7136613 YP_002425331.1 CDS AFE_0843 NC_011761.1 769808 770032 R hypothetical protein complement(769808..770032) Acidithiobacillus ferrooxidans ATCC 23270 7136046 YP_002425332.1 CDS uvrB NC_011761.1 770300 772327 D identified by match to protein family HMM PF00271; match to protein family HMM PF02151; match to protein family HMM TIGR00631; excinuclease ABC subunit B 770300..772327 Acidithiobacillus ferrooxidans ATCC 23270 7136006 YP_002425333.1 CDS AFE_0846 NC_011761.1 772432 773481 D identified by similarity to SP:P75691; match to protein family HMM PF00107; match to protein family HMM PF08240; zinc-containing alcohol dehydrogenase 772432..773481 Acidithiobacillus ferrooxidans ATCC 23270 7136416 YP_002425334.1 CDS pyrG NC_011761.1 773696 775333 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 773696..775333 Acidithiobacillus ferrooxidans ATCC 23270 7135153 YP_002425335.1 CDS kdsA NC_011761.1 775330 776175 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 775330..776175 Acidithiobacillus ferrooxidans ATCC 23270 7136593 YP_002425336.1 CDS eno NC_011761.1 776172 777452 D enolase; catalyzes the formation of phosphoenolpyruvate from 2-phospho-D-glycerate in glycolysis; phosphopyruvate hydratase 776172..777452 Acidithiobacillus ferrooxidans ATCC 23270 7135361 YP_002425337.1 CDS AFE_0850 NC_011761.1 777406 777873 D identified by match to protein family HMM PF04977; septum formation initiator family protein 777406..777873 Acidithiobacillus ferrooxidans ATCC 23270 7135754 YP_002425338.1 CDS efp NC_011761.1 777927 778487 R identified by match to protein family HMM PF01132; match to protein family HMM PF08207; match to protein family HMM PF09285; match to protein family HMM TIGR00038; translation elongation factor P complement(777927..778487) Acidithiobacillus ferrooxidans ATCC 23270 7136248 YP_002425339.1 CDS AFE_0852 NC_011761.1 778578 778880 D identified by similarity to GB:CAD13985.1; match to protein family HMM PF06155; hypothetical protein 778578..778880 Acidithiobacillus ferrooxidans ATCC 23270 7135034 YP_002425340.1 CDS uvrC NC_011761.1 778958 780784 D identified by match to protein family HMM PF00633; match to protein family HMM PF01541; match to protein family HMM PF02151; match to protein family HMM PF08459; match to protein family HMM TIGR00194; excinuclease ABC subunit C 778958..780784 Acidithiobacillus ferrooxidans ATCC 23270 7134511 YP_002425341.1 CDS pgsA NC_011761.1 780787 781377 D identified by match to protein family HMM PF01066; match to protein family HMM TIGR00560; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 780787..781377 Acidithiobacillus ferrooxidans ATCC 23270 7136944 YP_002425342.1 CDS AFE_0857 NC_011761.1 781692 782381 D identified by match to protein family HMM PF00027; match to protein family HMM PF00325; CarD family transcriptional regulator 781692..782381 Acidithiobacillus ferrooxidans ATCC 23270 7136000 YP_002425343.1 CDS AFE_0858 NC_011761.1 782410 782802 R identified by similarity to GB:CAE33148.1; hypothetical protein complement(782410..782802) Acidithiobacillus ferrooxidans ATCC 23270 7135879 YP_002425344.1 CDS AFE_0859 NC_011761.1 782846 784057 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(782846..784057) Acidithiobacillus ferrooxidans ATCC 23270 7137271 YP_002425345.1 CDS AFE_0860 NC_011761.1 784139 785122 R identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; iron-sulfur cluster-binding protein/oxidoreductase, FAD/NAD-binding complement(784139..785122) Acidithiobacillus ferrooxidans ATCC 23270 7135114 YP_002425346.1 CDS AFE_0861 NC_011761.1 785186 785647 R identified by match to protein family HMM PF00042; globin domain-containing protein complement(785186..785647) Acidithiobacillus ferrooxidans ATCC 23270 7135990 YP_002425347.1 CDS AFE_0862 NC_011761.1 785774 786937 R identified by match to protein family HMM PF00529; drug resistance transporter complement(785774..786937) Acidithiobacillus ferrooxidans ATCC 23270 7134542 YP_002425348.1 CDS AFE_0863 NC_011761.1 786940 788373 R identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; RND efflux system, drug efflux transporter outer membrane lipoprotein complement(786940..788373) Acidithiobacillus ferrooxidans ATCC 23270 7134883 YP_002425349.1 CDS AFE_0864 NC_011761.1 788373 789917 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter complement(788373..789917) Acidithiobacillus ferrooxidans ATCC 23270 7136357 YP_002425350.1 CDS AFE_0866 NC_011761.1 790023 790946 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 790023..790946 Acidithiobacillus ferrooxidans ATCC 23270 7137144 YP_002425351.1 CDS AFE_0865 NC_011761.1 790943 791209 R identified by similarity to PIR:F70416; hypothetical protein complement(790943..791209) Acidithiobacillus ferrooxidans ATCC 23270 7135751 YP_002425352.1 CDS AFE_0867 NC_011761.1 791272 791496 R identified by glimmer; putative; hypothetical protein complement(791272..791496) Acidithiobacillus ferrooxidans ATCC 23270 7136693 YP_002425353.1 CDS AFE_0869 NC_011761.1 792363 792605 D identified by match to protein family HMM PF02604; match to protein family HMM TIGR01552; addiction module antitoxin, Axe family 792363..792605 Acidithiobacillus ferrooxidans ATCC 23270 7134772 YP_002425354.1 CDS AFE_0870 NC_011761.1 792602 792865 D identified by similarity to GB:CAD85263.1; match to protein family HMM TIGR02116; Txe/YoeB family addiction module toxin 792602..792865 Acidithiobacillus ferrooxidans ATCC 23270 7135240 YP_002425355.1 CDS AFE_0871 NC_011761.1 793071 793475 D identified by similarity to GB:CAE31747.1; match to protein family HMM PF00011; heat shock protein, Hsp20 family 793071..793475 Acidithiobacillus ferrooxidans ATCC 23270 7135190 YP_002425356.1 CDS lon-2 NC_011761.1 793472 795838 D identified by similarity to SP:P36772; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La 793472..795838 Acidithiobacillus ferrooxidans ATCC 23270 7134091 YP_002425357.1 CDS AFE_0873 NC_011761.1 795942 796250 R identified by glimmer; putative; hypothetical protein complement(795942..796250) Acidithiobacillus ferrooxidans ATCC 23270 7134660 YP_002425358.1 CDS AFE_0875 NC_011761.1 797107 797583 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(797107..797583) Acidithiobacillus ferrooxidans ATCC 23270 7134960 YP_002425359.1 CDS AFE_0876 NC_011761.1 797789 798466 R identified by glimmer; putative; hypothetical protein complement(797789..798466) Acidithiobacillus ferrooxidans ATCC 23270 7135792 YP_002425360.1 CDS AFE_0878 NC_011761.1 798852 799364 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(798852..799364) Acidithiobacillus ferrooxidans ATCC 23270 7134359 YP_002425361.1 CDS AFE_0879 NC_011761.1 799956 800627 R identified by match to protein family HMM PF00126; LysR family transcriptional regulator complement(799956..800627) Acidithiobacillus ferrooxidans ATCC 23270 7136361 YP_002425362.1 CDS AFE_0881 NC_011761.1 801528 802106 D identified by similarity to GB:BAC62652.1; hypothetical protein 801528..802106 Acidithiobacillus ferrooxidans ATCC 23270 7135011 YP_002425363.1 CDS AFE_0882 NC_011761.1 802103 803266 D identified by similarity to SP:P40974; match to protein family HMM PF01266; flavin monoamine oxidase family protein 802103..803266 Acidithiobacillus ferrooxidans ATCC 23270 7134396 YP_002425364.1 CDS AFE_0883 NC_011761.1 803263 803382 D identified by similarity to GB:BAC19717.1; hypothetical protein 803263..803382 Acidithiobacillus ferrooxidans ATCC 23270 7136683 YP_002425365.1 CDS AFE_0885 NC_011761.1 803716 803820 R identified by glimmer; putative; hypothetical protein complement(803716..803820) Acidithiobacillus ferrooxidans ATCC 23270 7135332 YP_002425366.1 CDS AFE_0888 NC_011761.1 804368 804661 D identified by similarity to SP:Q97AY8; match to protein family HMM PF01906; hypothetical protein 804368..804661 Acidithiobacillus ferrooxidans ATCC 23270 7134186 YP_002425367.1 CDS AFE_0887 NC_011761.1 804656 804823 R identified by glimmer; putative; hypothetical protein complement(804656..804823) Acidithiobacillus ferrooxidans ATCC 23270 7135170 YP_002425368.1 CDS AFE_0889 NC_011761.1 804909 805163 D identified by similarity to GB:AAC84003.1; match to protein family HMM PF02604; stability protein StbD 804909..805163 Acidithiobacillus ferrooxidans ATCC 23270 7134411 YP_002425369.1 CDS AFE_0890 NC_011761.1 805153 805434 D identified by similarity to GB:AAC84004.1; match to protein family HMM PF05016; match to protein family HMM TIGR02385; stability protein StbE 805153..805434 Acidithiobacillus ferrooxidans ATCC 23270 7134722 YP_002425370.1 CDS AFE_0892 NC_011761.1 805977 807200 R identified by similarity to GB:AAO53956.1; match to protein family HMM PF02475; match to protein family HMM PF05175; hypothetical protein complement(805977..807200) Acidithiobacillus ferrooxidans ATCC 23270 7135850 YP_002425371.1 CDS eiF2B NC_011761.1 807355 808407 D identified by match to protein family HMM PF01008; match to protein family HMM TIGR00512; match to protein family HMM TIGR00524; aIF-2BI family translation initiation factor 807355..808407 Acidithiobacillus ferrooxidans ATCC 23270 7136402 YP_002425372.1 CDS gyrA NC_011761.1 808464 811001 D identified by similarity to SP:P09097; match to protein family HMM PF00521; match to protein family HMM PF03989; match to protein family HMM TIGR01063; DNA gyrase subunit A 808464..811001 Acidithiobacillus ferrooxidans ATCC 23270 7137036 YP_002425373.1 CDS serC NC_011761.1 811009 812097 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; required both in major phosphorylated pathway of serine biosynthesis and in the biosynthesis of pyridoxine; phosphoserine aminotransferase 811009..812097 Acidithiobacillus ferrooxidans ATCC 23270 7134047 YP_002425374.1 CDS serA NC_011761.1 812109 813692 D catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase 812109..813692 Acidithiobacillus ferrooxidans ATCC 23270 7137174 YP_002425375.1 CDS pheA NC_011761.1 813689 814765 D identified by similarity to SP:P27603; match to protein family HMM PF00800; match to protein family HMM PF01817; match to protein family HMM PF01842; match to protein family HMM TIGR01807; chorismate mutase/prephenate dehydratase 813689..814765 Acidithiobacillus ferrooxidans ATCC 23270 7136751 YP_002425376.1 CDS hisC-2 NC_011761.1 814767 815864 D identified by similarity to SP:P17731; match to protein family HMM PF00155; match to protein family HMM PF00266; match to protein family HMM TIGR01141; histidinol-phosphate aminotransferase 814767..815864 Acidithiobacillus ferrooxidans ATCC 23270 7135669 YP_002425377.1 CDS AFE_0899 NC_011761.1 815869 816885 D identified by match to protein family HMM PF00793; match to protein family HMM TIGR01361; phospho-2-dehydro-3-deoxyheptonate aldolase 815869..816885 Acidithiobacillus ferrooxidans ATCC 23270 7135384 YP_002425378.1 CDS tyrA NC_011761.1 816857 817762 D identified by similarity to SP:P20692; match to protein family HMM PF02153; prephenate dehydrogenase 816857..817762 Acidithiobacillus ferrooxidans ATCC 23270 7136437 YP_002425379.1 CDS aroA NC_011761.1 817766 819067 D identified by similarity to SP:P20691; match to protein family HMM PF00275; match to protein family HMM TIGR01356; 3-phosphoshikimate 1-carboxyvinyltransferase 817766..819067 Acidithiobacillus ferrooxidans ATCC 23270 7135906 YP_002425380.1 CDS cmk NC_011761.1 819064 819744 D identified by match to protein family HMM PF02224; match to protein family HMM TIGR00017; cytidylate kinase 819064..819744 Acidithiobacillus ferrooxidans ATCC 23270 7136153 YP_002425381.1 CDS rpsA NC_011761.1 819822 821528 D identified by similarity to SP:P02349; match to protein family HMM PF00575; match to protein family HMM TIGR00717; 30S ribosomal protein S1 819822..821528 Acidithiobacillus ferrooxidans ATCC 23270 7135365 YP_002425382.1 CDS AFE_0904 NC_011761.1 821549 821653 R identified by glimmer; putative; hypothetical protein complement(821549..821653) Acidithiobacillus ferrooxidans ATCC 23270 7136671 YP_002425383.1 CDS ihfB NC_011761.1 821685 821990 D identified by match to protein family HMM PF00216; match to protein family HMM TIGR00988; integration host factor subunit beta 821685..821990 Acidithiobacillus ferrooxidans ATCC 23270 7136139 YP_002425384.1 CDS AFE_0906 NC_011761.1 822007 823161 D identified by similarity to SP:P45576; hypothetical protein 822007..823161 Acidithiobacillus ferrooxidans ATCC 23270 7136394 YP_002425385.1 CDS pyrF NC_011761.1 823149 823880 D identified by similarity to SP:Q59654; match to protein family HMM PF00215; match to protein family HMM TIGR01740; orotidine 5'-phosphate decarboxylase 823149..823880 Acidithiobacillus ferrooxidans ATCC 23270 7136586 YP_002425386.1 CDS pyrE NC_011761.1 823965 824534 D identified by similarity to SP:Q60016; match to protein family HMM PF00156; match to protein family HMM TIGR01367; orotate phosphoribosyltransferase 823965..824534 Acidithiobacillus ferrooxidans ATCC 23270 7135895 YP_002425387.1 CDS tig NC_011761.1 824587 825891 D identified by similarity to SP:P22257; match to protein family HMM PF00254; match to protein family HMM PF05697; match to protein family HMM PF05698; match to protein family HMM TIGR00115; trigger factor 824587..825891 Acidithiobacillus ferrooxidans ATCC 23270 7134087 YP_002425388.1 CDS clpP NC_011761.1 825937 826581 D identified by similarity to SP:P19245; match to protein family HMM PF00574; match to protein family HMM TIGR00493; ATP-dependent Clp protease, proteolytic subunit ClpP 825937..826581 Acidithiobacillus ferrooxidans ATCC 23270 7135884 YP_002425389.1 CDS clpX NC_011761.1 826600 827871 D identified by similarity to SP:P33138; match to protein family HMM PF00004; match to protein family HMM PF06689; match to protein family HMM PF07724; match to protein family HMM TIGR00382; ATP-dependent Clp protease ATP-binding subunit ClpX 826600..827871 Acidithiobacillus ferrooxidans ATCC 23270 7135357 YP_002425390.1 CDS lon-1 NC_011761.1 828005 830395 D identified by similarity to SP:P08177; match to protein family HMM PF00004; match to protein family HMM PF02190; match to protein family HMM PF05362; match to protein family HMM PF07728; match to protein family HMM TIGR00763; ATP-dependent protease La 828005..830395 Acidithiobacillus ferrooxidans ATCC 23270 7136522 YP_002425391.1 CDS AFE_0913 NC_011761.1 830411 830539 R identified by glimmer; putative; hypothetical protein complement(830411..830539) Acidithiobacillus ferrooxidans ATCC 23270 7136908 YP_002425392.1 CDS hup NC_011761.1 830639 830911 D identified by similarity to SP:P02341; match to protein family HMM PF00216; DNA-binding protein HU 830639..830911 Acidithiobacillus ferrooxidans ATCC 23270 7135224 YP_002425393.1 CDS AFE_0918 NC_011761.1 832835 833437 R identified by match to protein family HMM PF01569; PAP2 family protein complement(832835..833437) Acidithiobacillus ferrooxidans ATCC 23270 7135774 YP_002425394.1 CDS AFE_0919 NC_011761.1 833449 834090 R identified by similarity to GB:CAD14235.1; hypothetical protein complement(833449..834090) Acidithiobacillus ferrooxidans ATCC 23270 7134645 YP_002425395.1 CDS AFE_0920 NC_011761.1 834332 835702 D metal ion transporter NRAMP family 834332..835702 Acidithiobacillus ferrooxidans ATCC 23270 7135273 YP_002425396.1 CDS AFE_0921 NC_011761.1 835713 835913 D identified by glimmer; putative; hypothetical protein 835713..835913 Acidithiobacillus ferrooxidans ATCC 23270 7136379 YP_002425397.1 CDS AFE_0922 NC_011761.1 835910 837373 D identified by match to protein family HMM PF07690; EmrB/QacA family drug resistance transporter 835910..837373 Acidithiobacillus ferrooxidans ATCC 23270 7135063 YP_002425398.1 CDS AFE_0923 NC_011761.1 837374 838039 R HflD; UPF0274; in Escherichia coli this protein is peripherally associated with the membrane and appears to act with lambda CII protein; in Haemophilus influenzae a knockout of the HI0638 gene affected paracytosis; hypothetical protein complement(837374..838039) Acidithiobacillus ferrooxidans ATCC 23270 7134890 YP_002425399.1 CDS glnD NC_011761.1 838080 840668 R identified by match to protein family HMM PF01842; match to protein family HMM PF01966; match to protein family HMM PF08335; match to protein family HMM TIGR01693; protein-P-II uridylyltransferase complement(838080..840668) Acidithiobacillus ferrooxidans ATCC 23270 7137187 YP_002425400.1 CDS map NC_011761.1 840671 841480 R identified by similarity to SP:P07906; match to protein family HMM PF00557; match to protein family HMM TIGR00500; methionine aminopeptidase complement(840671..841480) Acidithiobacillus ferrooxidans ATCC 23270 7136124 YP_002425401.1 CDS sfsA NC_011761.1 841499 842197 R identified by match to protein family HMM PF03749; match to protein family HMM TIGR00230; sugar fermentation stimulation protein complement(841499..842197) Acidithiobacillus ferrooxidans ATCC 23270 7136838 YP_002425402.1 CDS AFE_0927 NC_011761.1 842208 843098 R identified by match to protein family HMM PF00749; glutamyl-tRNA synthetase complement(842208..843098) Acidithiobacillus ferrooxidans ATCC 23270 7134704 YP_002425403.1 CDS thiL NC_011761.1 843160 844182 D identified by similarity to SP:P77785; match to protein family HMM PF02769; match to protein family HMM TIGR01379; thiamine-monophosphate kinase 843160..844182 Acidithiobacillus ferrooxidans ATCC 23270 7134417 YP_002425404.1 CDS pgpA NC_011761.1 844172 844660 D identified by match to protein family HMM PF04608; phosphatidylglycerophosphatase A 844172..844660 Acidithiobacillus ferrooxidans ATCC 23270 7134187 YP_002425405.1 CDS AFE_0930 NC_011761.1 844657 845502 D identified by match to protein family HMM PF02464; match to protein family HMM TIGR00199; CinA family protein 844657..845502 Acidithiobacillus ferrooxidans ATCC 23270 7134771 YP_002425406.1 CDS AFE_0931 NC_011761.1 845555 845683 D identified by glimmer; putative; hypothetical protein 845555..845683 Acidithiobacillus ferrooxidans ATCC 23270 7135919 YP_002425407.1 CDS recA NC_011761.1 845676 846713 D identified by similarity to SP:P16238; match to protein family HMM PF00154; match to protein family HMM TIGR02012; recA protein 845676..846713 Acidithiobacillus ferrooxidans ATCC 23270 7134088 YP_002425408.1 CDS recX NC_011761.1 846714 847166 D identified by match to protein family HMM PF02631; regulatory protein RecX 846714..847166 Acidithiobacillus ferrooxidans ATCC 23270 7134205 YP_002425409.1 CDS alaS NC_011761.1 847236 849869 D identified by similarity to SP:P00957; match to protein family HMM PF01411; match to protein family HMM PF02272; match to protein family HMM PF07973; match to protein family HMM TIGR00344; alanyl-tRNA synthetase 847236..849869 Acidithiobacillus ferrooxidans ATCC 23270 7136685 YP_002425410.1 CDS AFE_0935 NC_011761.1 849893 850471 R identified by glimmer; putative; hypothetical protein complement(849893..850471) Acidithiobacillus ferrooxidans ATCC 23270 7135447 YP_002425411.1 CDS hoxW NC_011761.1 850468 850986 R hydrogenase maturation protease complement(850468..850986) Acidithiobacillus ferrooxidans ATCC 23270 7136345 YP_002425412.1 CDS hoxH NC_011761.1 850983 852251 R identified by similarity to GB:BAC00531.1; match to protein family HMM PF00374; [NiFe] hydrogenase subunit alpha complement(850983..852251) Acidithiobacillus ferrooxidans ATCC 23270 7135369 YP_002425413.1 CDS hoxY NC_011761.1 852265 853062 R identified by similarity to GB:BAC00530.1; match to protein family HMM PF01058; [NiFe] hydrogenase subunit delta complement(852265..853062) Acidithiobacillus ferrooxidans ATCC 23270 7134564 YP_002425414.1 CDS hoxU NC_011761.1 853067 853897 R identified by similarity to GB:BAC00529.1; match to protein family HMM PF00175; match to protein family HMM PF00970; [NiFe] hydrogenase subunit gamma complement(853067..853897) Acidithiobacillus ferrooxidans ATCC 23270 7136162 YP_002425415.1 CDS hoxF NC_011761.1 853890 854996 R identified by similarity to GB:BAC00528.1; match to protein family HMM PF00037; [NiFe] hydrogenase subunit beta complement(853890..854996) Acidithiobacillus ferrooxidans ATCC 23270 7136661 YP_002425416.1 CDS AFE_0941 NC_011761.1 855073 856992 R identified by similarity to SP:P03810; match to protein family HMM PF01464; murein transglycosylase complement(855073..856992) Acidithiobacillus ferrooxidans ATCC 23270 7135193 YP_002425417.1 CDS AFE_0942 NC_011761.1 857210 860551 R identified by match to protein family HMM PF00176; match to protein family HMM PF00271; match to protein family HMM PF04434; DNA helicase, SNF2/RAD54 family complement(857210..860551) Acidithiobacillus ferrooxidans ATCC 23270 7134226 YP_002425418.1 CDS AFE_0943 NC_011761.1 860731 862182 D identified by similarity to SP:P26405; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; phosphomannomutase 860731..862182 Acidithiobacillus ferrooxidans ATCC 23270 7136889 YP_002425419.1 CDS AFE_0944 NC_011761.1 862166 862474 D identified by glimmer; putative; hypothetical protein 862166..862474 Acidithiobacillus ferrooxidans ATCC 23270 7134057 YP_002425420.1 CDS AFE_0945 NC_011761.1 862487 864079 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(862487..864079) Acidithiobacillus ferrooxidans ATCC 23270 7136909 YP_002425421.1 CDS AFE_0946 NC_011761.1 864196 864369 R identified by glimmer; putative; hypothetical protein complement(864196..864369) Acidithiobacillus ferrooxidans ATCC 23270 7136802 YP_002425422.1 CDS thiC NC_011761.1 864398 866281 D identified by similarity to SP:P30136; match to protein family HMM PF01964; match to protein family HMM TIGR00190; thiamine biosynthesis protein ThiC 864398..866281 Acidithiobacillus ferrooxidans ATCC 23270 7135166 YP_002425423.1 CDS AFE_0949 NC_011761.1 866307 866771 R identified by similarity to GB:AAO57577.1; hypothetical protein complement(866307..866771) Acidithiobacillus ferrooxidans ATCC 23270 7135741 YP_002425424.1 CDS AFE_0950 NC_011761.1 866776 868023 R identified by match to protein family HMM PF00732; match to protein family HMM PF01266; oxidoreductase, GMC family complement(866776..868023) Acidithiobacillus ferrooxidans ATCC 23270 7135498 YP_002425425.1 CDS AFE_0951 NC_011761.1 868053 869459 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase (NAD) family protein complement(868053..869459) Acidithiobacillus ferrooxidans ATCC 23270 7136899 YP_002425426.1 CDS AFE_0952 NC_011761.1 869514 869615 R identified by glimmer; putative; hypothetical protein complement(869514..869615) Acidithiobacillus ferrooxidans ATCC 23270 7134574 YP_002425427.1 CDS AFE_0953 NC_011761.1 869633 869836 R hypothetical protein complement(869633..869836) Acidithiobacillus ferrooxidans ATCC 23270 7136669 YP_002425428.1 CDS cydB NC_011761.1 869849 870982 R identified by match to protein family HMM PF02322; match to protein family HMM TIGR00203; cytochrome d ubiquinol oxidase, subunit II complement(869849..870982) Acidithiobacillus ferrooxidans ATCC 23270 7136073 YP_002425429.1 CDS cydA NC_011761.1 871042 872670 R identified by similarity to SP:Q09049; match to protein family HMM PF01654; cytochrome d ubiquinol oxidase, subunit I complement(871042..872670) Acidithiobacillus ferrooxidans ATCC 23270 7134386 YP_002425430.1 CDS AFE_0956 NC_011761.1 872687 873562 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(872687..873562) Acidithiobacillus ferrooxidans ATCC 23270 7134962 YP_002425431.1 CDS AFE_0957 NC_011761.1 873727 875082 D identified by match to protein family HMM PF00158; match to protein family HMM PF07728; sigma-54 dependent transcriptional regulator 873727..875082 Acidithiobacillus ferrooxidans ATCC 23270 7137032 YP_002425432.1 CDS AFE_0959 NC_011761.1 875141 875722 D identified by match to protein family HMM PF02230; phospholipase/carboxylesterase 875141..875722 Acidithiobacillus ferrooxidans ATCC 23270 7135235 YP_002425433.1 CDS AFE_0958 NC_011761.1 875719 877137 R identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(875719..877137) Acidithiobacillus ferrooxidans ATCC 23270 7134354 YP_002425434.1 CDS mdoD NC_011761.1 877541 879085 D involved in the control of the structural glucose backbone of osmoregulated periplasmic glucans; glucan biosynthesis protein D 877541..879085 Acidithiobacillus ferrooxidans ATCC 23270 7136839 YP_002425435.1 CDS AFE_0961 NC_011761.1 879085 879588 D identified by glimmer; putative; hypothetical protein 879085..879588 Acidithiobacillus ferrooxidans ATCC 23270 7134292 YP_002425436.1 CDS mdoH NC_011761.1 879591 881669 D necessary for biosynthesis of osmoregulated periplasmic glucans possibly involved in the transfer to the periplasmic space; glucosyltransferase MdoH 879591..881669 Acidithiobacillus ferrooxidans ATCC 23270 7136114 YP_002425437.1 CDS AFE_0963 NC_011761.1 881688 882704 R identified by similarity to GB:CAE34367.1; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; male sterility protein complement(881688..882704) Acidithiobacillus ferrooxidans ATCC 23270 7135816 YP_002425438.1 CDS AFE_0964 NC_011761.1 882717 883280 D identified by match to protein family HMM PF04241; hypothetical protein 882717..883280 Acidithiobacillus ferrooxidans ATCC 23270 7136559 YP_002425439.1 CDS AFE_0965 NC_011761.1 883261 883668 D identified by glimmer; putative; hypothetical protein 883261..883668 Acidithiobacillus ferrooxidans ATCC 23270 7137236 YP_002425440.1 CDS AFE_0966 NC_011761.1 883707 885059 R hypothetical protein complement(883707..885059) Acidithiobacillus ferrooxidans ATCC 23270 7136966 YP_002425441.1 CDS AFE_0967 NC_011761.1 885340 888753 R identified by similarity to GB:AAQ58159.1; type IV pilin biogenesis protein complement(885340..888753) Acidithiobacillus ferrooxidans ATCC 23270 7135592 YP_002425442.1 CDS AFE_0968 NC_011761.1 888750 889337 R identified by glimmer; putative; hypothetical protein complement(888750..889337) Acidithiobacillus ferrooxidans ATCC 23270 7135950 YP_002425443.1 CDS AFE_0969 NC_011761.1 889334 890467 R identified by match to protein family HMM TIGR02532; type IV pilin complement(889334..890467) Acidithiobacillus ferrooxidans ATCC 23270 7136563 YP_002425444.1 CDS AFE_0970 NC_011761.1 890470 890970 R identified by similarity to GB:AAB48595.1; match to protein family HMM PF07963; match to protein family HMM TIGR02532; type IV pilin complement(890470..890970) Acidithiobacillus ferrooxidans ATCC 23270 7134591 YP_002425445.1 CDS AFE_0971 NC_011761.1 890955 891521 R identified by match to protein family HMM PF07963; match to protein family HMM TIGR02532; pilin signal sequence domain-containing protein complement(890955..891521) Acidithiobacillus ferrooxidans ATCC 23270 7136779 YP_002425446.1 CDS pilC NC_011761.1 891511 892770 R identified by similarity to SP:P45793; match to protein family HMM PF00482; type IV pilus biogenesis protein PilC complement(891511..892770) Acidithiobacillus ferrooxidans ATCC 23270 7134811 YP_002425447.1 CDS AFE_0973 NC_011761.1 892877 893881 R SohB; periplasmic protein; member of the peptidase S49 family; periplasmic protease complement(892877..893881) Acidithiobacillus ferrooxidans ATCC 23270 7135580 YP_002425448.1 CDS AFE_0974 NC_011761.1 893861 893965 D identified by glimmer; putative; hypothetical protein 893861..893965 Acidithiobacillus ferrooxidans ATCC 23270 7135352 YP_002425449.1 CDS moaD NC_011761.1 893989 894231 D identified by similarity to SP:P30748; match to protein family HMM PF02597; molybdopterin converting factor subunit 1 893989..894231 Acidithiobacillus ferrooxidans ATCC 23270 7135877 YP_002425450.1 CDS moaE NC_011761.1 894234 894728 D identified by similarity to SP:P30749; match to protein family HMM PF02391; molybdopterin converting factor subunit 2 894234..894728 Acidithiobacillus ferrooxidans ATCC 23270 7136163 YP_002425451.1 CDS AFE_0977 NC_011761.1 894735 895220 D identified by match to protein family HMM PF04461; hypothetical protein 894735..895220 Acidithiobacillus ferrooxidans ATCC 23270 7135585 YP_002425452.1 CDS AFE_0978 NC_011761.1 895238 895567 D identified by similarity to GB:CAB71242.1; match to protein family HMM PF03259; roadblock/LC7 domain-containing protein 895238..895567 Acidithiobacillus ferrooxidans ATCC 23270 7135770 YP_002425453.1 CDS gcvT NC_011761.1 895573 896691 D identified by match to protein family HMM PF01571; match to protein family HMM PF08669; match to protein family HMM TIGR00528; glycine cleavage system T protein 895573..896691 Acidithiobacillus ferrooxidans ATCC 23270 7136697 YP_002425454.1 CDS gcvH NC_011761.1 896688 897071 D identified by match to protein family HMM PF01597; match to protein family HMM TIGR00527; glycine cleavage system H protein 896688..897071 Acidithiobacillus ferrooxidans ATCC 23270 7136854 YP_002425455.1 CDS gcvP NC_011761.1 897077 898420 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 2 to form the P protein; glycine dehydrogenase subunit 1 897077..898420 Acidithiobacillus ferrooxidans ATCC 23270 7134534 YP_002425456.1 CDS AFE_0982 NC_011761.1 898342 899868 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 898342..899868 Acidithiobacillus ferrooxidans ATCC 23270 7134064 YP_002425457.1 CDS AFE_0983 NC_011761.1 899873 901561 R identified by similarity to SP:P27299; match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter ATP-binding protein, MsbA family complement(899873..901561) Acidithiobacillus ferrooxidans ATCC 23270 7136476 YP_002425458.1 CDS AFE_0984 NC_011761.1 901558 901881 R identified by similarity to SP:P08811; match to protein family HMM PF00037; ferredoxin complement(901558..901881) Acidithiobacillus ferrooxidans ATCC 23270 7136464 YP_002425459.1 CDS AFE_0985 NC_011761.1 902168 902770 D identified by match to protein family HMM PF00578; match to protein family HMM PF08534; antioxidant, AhpC/Tsa family 902168..902770 Acidithiobacillus ferrooxidans ATCC 23270 7135974 YP_002425460.1 CDS AFE_0986 NC_011761.1 902869 903699 R identified by glimmer; putative; hypothetical protein complement(902869..903699) Acidithiobacillus ferrooxidans ATCC 23270 7134730 YP_002425461.1 CDS AFE_0987 NC_011761.1 903698 904558 D identified by similarity to GB:CAE41414.1; match to protein family HMM PF02811; hypothetical protein 903698..904558 Acidithiobacillus ferrooxidans ATCC 23270 7135672 YP_002425462.1 CDS AFE_0988 NC_011761.1 904658 905698 D hypothetical protein 904658..905698 Acidithiobacillus ferrooxidans ATCC 23270 7136935 YP_002425463.1 CDS AFE_0989 NC_011761.1 905813 906505 R identified by glimmer; putative; hypothetical protein complement(905813..906505) Acidithiobacillus ferrooxidans ATCC 23270 7134648 YP_002425464.1 CDS AFE_0990 NC_011761.1 906355 906747 D identified by glimmer; putative; hypothetical protein 906355..906747 Acidithiobacillus ferrooxidans ATCC 23270 7136284 YP_002425465.1 CDS AFE_0991 NC_011761.1 906740 907507 D identified by match to protein family HMM PF00588; match to protein family HMM PF08032; match to protein family HMM TIGR00186; tRNA (guanosine-2'-O-)-methyltransferase 906740..907507 Acidithiobacillus ferrooxidans ATCC 23270 7135467 YP_002425466.1 CDS AFE_0992 NC_011761.1 907532 908305 D identified by match to protein family HMM PF01026; match to protein family HMM TIGR00010; TatD family hydrolase 907532..908305 Acidithiobacillus ferrooxidans ATCC 23270 7134940 YP_002425467.1 CDS AFE_0993 NC_011761.1 908302 909060 D identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 908302..909060 Acidithiobacillus ferrooxidans ATCC 23270 7137112 YP_002425468.1 CDS AFE_0995 NC_011761.1 909231 910280 R identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family complement(909231..910280) Acidithiobacillus ferrooxidans ATCC 23270 7135842 YP_002425469.1 CDS AFE_0996 NC_011761.1 910130 910489 R identified by match to protein family HMM TIGR01764; DNA binding protein, excisionase family complement(910130..910489) Acidithiobacillus ferrooxidans ATCC 23270 7136658 YP_002425470.1 CDS AFE_0997 NC_011761.1 910510 910932 R identified by glimmer; putative; hypothetical protein complement(910510..910932) Acidithiobacillus ferrooxidans ATCC 23270 7136182 YP_002425471.1 CDS AFE_0998 NC_011761.1 911295 912026 R identified by similarity to SP:Q06553; match to protein family HMM PF00717; match to protein family HMM PF01381; match to protein family HMM PF07022; transcriptional regulator complement(911295..912026) Acidithiobacillus ferrooxidans ATCC 23270 7134284 YP_002425472.1 CDS AFE_0999 NC_011761.1 912109 912318 D identified by similarity to SP:P76063; Cro family transcriptional regulator 912109..912318 Acidithiobacillus ferrooxidans ATCC 23270 7135949 YP_002425473.1 CDS AFE_1000 NC_011761.1 912929 913564 D identified by match to protein family HMM PF02498; BRO family protein 912929..913564 Acidithiobacillus ferrooxidans ATCC 23270 7136890 YP_002425474.1 CDS AFE_1001 NC_011761.1 913773 914957 D identified by glimmer; putative; hypothetical protein 913773..914957 Acidithiobacillus ferrooxidans ATCC 23270 7135294 YP_002425475.1 CDS AFE_1002 NC_011761.1 914990 915688 D identified by similarity to GB:AAM08041.1; hypothetical protein 914990..915688 Acidithiobacillus ferrooxidans ATCC 23270 7136165 YP_002425476.1 CDS AFE_1003 NC_011761.1 915678 915878 D identified by glimmer; putative; hypothetical protein 915678..915878 Acidithiobacillus ferrooxidans ATCC 23270 7136708 YP_002425477.1 CDS AFE_1004 NC_011761.1 915875 916090 D identified by glimmer; putative; hypothetical protein 915875..916090 Acidithiobacillus ferrooxidans ATCC 23270 7136969 YP_002425478.1 CDS AFE_1005 NC_011761.1 916204 916956 D identified by glimmer; putative; hypothetical protein 916204..916956 Acidithiobacillus ferrooxidans ATCC 23270 7134944 YP_002425479.1 CDS AFE_1006 NC_011761.1 916983 917486 D identified by glimmer; putative; hypothetical protein 916983..917486 Acidithiobacillus ferrooxidans ATCC 23270 7135226 YP_002425480.1 CDS AFE_1007 NC_011761.1 917483 918112 D identified by match to protein family HMM PF01464; transglycosylase 917483..918112 Acidithiobacillus ferrooxidans ATCC 23270 7136980 YP_002425481.1 CDS AFE_1008 NC_011761.1 918078 918452 D identified by glimmer; putative; hypothetical protein 918078..918452 Acidithiobacillus ferrooxidans ATCC 23270 7136166 YP_002425482.1 CDS AFE_1009 NC_011761.1 918356 918514 D identified by glimmer; putative; hypothetical protein 918356..918514 Acidithiobacillus ferrooxidans ATCC 23270 7136131 YP_002425483.1 CDS AFE_1010 NC_011761.1 918496 918792 D identified by glimmer; putative; hypothetical protein 918496..918792 Acidithiobacillus ferrooxidans ATCC 23270 7136930 YP_002425484.1 CDS AFE_1011 NC_011761.1 918779 919054 D identified by glimmer; putative; hypothetical protein 918779..919054 Acidithiobacillus ferrooxidans ATCC 23270 7137218 YP_002425485.1 CDS AFE_1012 NC_011761.1 919164 919439 D identified by glimmer; putative; hypothetical protein 919164..919439 Acidithiobacillus ferrooxidans ATCC 23270 7134393 YP_002425486.1 CDS AFE_1013 NC_011761.1 919436 921553 D identified by match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01051; DNA topoisomerase I 919436..921553 Acidithiobacillus ferrooxidans ATCC 23270 7134908 YP_002425487.1 CDS AFE_1014 NC_011761.1 921696 922022 D identified by glimmer; putative; hypothetical protein 921696..922022 Acidithiobacillus ferrooxidans ATCC 23270 7135943 YP_002425488.1 CDS AFE_1015 NC_011761.1 922023 922373 D identified by glimmer; putative; hypothetical protein 922023..922373 Acidithiobacillus ferrooxidans ATCC 23270 7135082 YP_002425489.1 CDS AFE_1016 NC_011761.1 922373 923242 D lipoprotein 922373..923242 Acidithiobacillus ferrooxidans ATCC 23270 7134471 YP_002425490.1 CDS AFE_1017 NC_011761.1 923239 923397 D identified by glimmer; putative; hypothetical protein 923239..923397 Acidithiobacillus ferrooxidans ATCC 23270 7135136 YP_002425491.1 CDS AFE_1018 NC_011761.1 923384 923932 D identified by similarity to SP:P77202; thiol:disulfide interchange domain-containing protein 923384..923932 Acidithiobacillus ferrooxidans ATCC 23270 7136517 YP_002425492.1 CDS AFE_1019 NC_011761.1 924286 924396 R identified by glimmer; putative; hypothetical protein complement(924286..924396) Acidithiobacillus ferrooxidans ATCC 23270 7134254 YP_002425493.1 CDS AFE_1020 NC_011761.1 924381 924656 D identified by glimmer; putative; hypothetical protein 924381..924656 Acidithiobacillus ferrooxidans ATCC 23270 7137021 YP_002425494.1 CDS AFE_1021 NC_011761.1 924674 924922 D identified by similarity to GB:AAO35815.1; hypothetical protein 924674..924922 Acidithiobacillus ferrooxidans ATCC 23270 7137041 YP_002425495.1 CDS AFE_1022 NC_011761.1 924960 925817 D identified by match to protein family HMM PF01734; patatin-like phospholipase family protein 924960..925817 Acidithiobacillus ferrooxidans ATCC 23270 7134814 YP_002425496.1 CDS AFE_1023 NC_011761.1 926062 927426 D identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein 926062..927426 Acidithiobacillus ferrooxidans ATCC 23270 7135528 YP_002425497.1 CDS AFE_1024 NC_011761.1 927479 928069 D identified by similarity to GB:AAP58571.1; match to protein family HMM PF02163; membrane-associated zinc metalloprotease 927479..928069 Acidithiobacillus ferrooxidans ATCC 23270 7136939 YP_002425498.1 CDS AFE_1025 NC_011761.1 928127 928570 D identified by glimmer; putative; hypothetical protein 928127..928570 Acidithiobacillus ferrooxidans ATCC 23270 7135597 YP_002425499.1 CDS AFE_1026 NC_011761.1 928656 928748 R identified by glimmer; putative; hypothetical protein complement(928656..928748) Acidithiobacillus ferrooxidans ATCC 23270 7136722 YP_002425500.1 CDS AFE_1027 NC_011761.1 928715 928864 R identified by glimmer; putative; hypothetical protein complement(928715..928864) Acidithiobacillus ferrooxidans ATCC 23270 7136350 YP_002425501.1 CDS AFE_1028 NC_011761.1 928854 929747 D identified by similarity to GB:CAC11876.1; hypothetical protein 928854..929747 Acidithiobacillus ferrooxidans ATCC 23270 7137168 YP_002425502.1 CDS AFE_1029 NC_011761.1 929744 930427 D identified by glimmer; putative; hypothetical protein 929744..930427 Acidithiobacillus ferrooxidans ATCC 23270 7134878 YP_002425503.1 CDS AFE_1030 NC_011761.1 930584 930796 R hypothetical protein complement(930584..930796) Acidithiobacillus ferrooxidans ATCC 23270 7134502 YP_002425504.1 CDS AFE_1031 NC_011761.1 930796 931074 R hypothetical protein complement(930796..931074) Acidithiobacillus ferrooxidans ATCC 23270 7134131 YP_002425505.1 CDS AFE_1032 NC_011761.1 931090 931689 D identified by glimmer; putative; hypothetical protein 931090..931689 Acidithiobacillus ferrooxidans ATCC 23270 7136315 YP_002425506.1 CDS AFE_1033 NC_011761.1 931727 932341 D Adjacent to a gene for transposase; identified by match to protein family HMM PF00239; transposon resolvase 931727..932341 Acidithiobacillus ferrooxidans ATCC 23270 7135315 YP_002425507.1 CDS AFE_1034 NC_011761.1 932338 933843 D Adjacent to a gene for resolvase; identified by match to protein family HMM PF07282; transposon transposase 932338..933843 Acidithiobacillus ferrooxidans ATCC 23270 7135819 YP_002425508.1 CDS AFE_1035 NC_011761.1 933855 934244 D identified by glimmer; putative; hypothetical protein 933855..934244 Acidithiobacillus ferrooxidans ATCC 23270 7136443 YP_002425509.1 CDS AFE_1036 NC_011761.1 934313 935020 D identified by glimmer; putative; hypothetical protein 934313..935020 Acidithiobacillus ferrooxidans ATCC 23270 7135009 YP_002425510.1 CDS csf4 NC_011761.1 935088 937397 R identified by match to protein family HMM TIGR03117; CRISPR-associated DEAD/DEAH-box helicase Csf4 complement(935088..937397) Acidithiobacillus ferrooxidans ATCC 23270 7136770 YP_002425511.1 CDS csf1 NC_011761.1 937392 938141 D identified by match to protein family HMM TIGR03114; CRISPR-associated protein, Csf1 family 937392..938141 Acidithiobacillus ferrooxidans ATCC 23270 7135573 YP_002425512.1 CDS csf2 NC_011761.1 938138 939199 D identified by match to protein family HMM TIGR03115; CRISPR-associated protein, Csf2 family 938138..939199 Acidithiobacillus ferrooxidans ATCC 23270 7134289 YP_002425513.1 CDS csf3 NC_011761.1 939196 939888 D identified by match to protein family HMM TIGR03116; CRISPR-associated protein, Csf3 family 939196..939888 Acidithiobacillus ferrooxidans ATCC 23270 7136468 YP_002425514.1 CDS AFE_1041 NC_011761.1 939901 940068 D identified by glimmer; putative; hypothetical protein 939901..940068 Acidithiobacillus ferrooxidans ATCC 23270 7135405 YP_002425515.1 CDS AFE_1042 NC_011761.1 939999 940628 D identified by glimmer; putative; hypothetical protein 939999..940628 Acidithiobacillus ferrooxidans ATCC 23270 7136346 YP_002425516.1 CDS AFE_1044 NC_011761.1 942655 942924 R identified by glimmer; putative; hypothetical protein complement(942655..942924) Acidithiobacillus ferrooxidans ATCC 23270 7134108 YP_002425517.1 CDS AFE_1045 NC_011761.1 942952 943341 D identified by glimmer; putative; hypothetical protein 942952..943341 Acidithiobacillus ferrooxidans ATCC 23270 7136861 YP_002425518.1 CDS AFE_1046 NC_011761.1 943345 943788 D hypothetical protein 943345..943788 Acidithiobacillus ferrooxidans ATCC 23270 7134337 YP_002425519.1 CDS AFE_1047 NC_011761.1 943788 945923 D identified by match to protein family HMM TIGR01448; recombinase D 943788..945923 Acidithiobacillus ferrooxidans ATCC 23270 7136052 YP_002425520.1 CDS AFE_1048 NC_011761.1 946028 946726 D identified by glimmer; putative; hypothetical protein 946028..946726 Acidithiobacillus ferrooxidans ATCC 23270 7136528 YP_002425521.1 CDS AFE_1049 NC_011761.1 946745 946987 D lipoprotein 946745..946987 Acidithiobacillus ferrooxidans ATCC 23270 7134260 YP_002425522.1 CDS AFE_1050 NC_011761.1 947030 947323 R identified by glimmer; putative; hypothetical protein complement(947030..947323) Acidithiobacillus ferrooxidans ATCC 23270 7134378 YP_002425523.1 CDS AFE_1051 NC_011761.1 947295 947564 D identified by glimmer; putative; hypothetical protein 947295..947564 Acidithiobacillus ferrooxidans ATCC 23270 7134719 YP_002425524.1 CDS AFE_1052 NC_011761.1 947587 947796 D identified by glimmer; putative; hypothetical protein 947587..947796 Acidithiobacillus ferrooxidans ATCC 23270 7134919 YP_002425525.1 CDS AFE_1053 NC_011761.1 947846 949570 D identified by similarity to GB:AAF69908.1; match to protein family HMM PF01507; hypothetical protein 947846..949570 Acidithiobacillus ferrooxidans ATCC 23270 7136196 YP_002425526.1 CDS AFE_1054 NC_011761.1 949567 950457 D identified by glimmer; putative; hypothetical protein 949567..950457 Acidithiobacillus ferrooxidans ATCC 23270 7135389 YP_002425527.1 CDS AFE_1055 NC_011761.1 950462 951001 D identified by glimmer; putative; hypothetical protein 950462..951001 Acidithiobacillus ferrooxidans ATCC 23270 7137247 YP_002425528.1 CDS AFE_1056 NC_011761.1 951321 951545 D identified by glimmer; putative; hypothetical protein 951321..951545 Acidithiobacillus ferrooxidans ATCC 23270 7135569 YP_002425529.1 CDS AFE_1057 NC_011761.1 951571 953220 D identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; TPR domain/sulfotransferase domain-containing protein 951571..953220 Acidithiobacillus ferrooxidans ATCC 23270 7136351 YP_002425530.1 CDS AFE_1058 NC_011761.1 953382 954608 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISAfe8, transposase complement(953382..954608) Acidithiobacillus ferrooxidans ATCC 23270 7137146 YP_002425531.1 CDS AFE_1059 NC_011761.1 954716 955378 D identified by glimmer; putative; hypothetical protein 954716..955378 Acidithiobacillus ferrooxidans ATCC 23270 7135988 YP_002425532.1 CDS AFE_1060 NC_011761.1 955400 955894 D identified by glimmer; putative; hypothetical protein 955400..955894 Acidithiobacillus ferrooxidans ATCC 23270 7136736 YP_002425533.1 CDS AFE_1062 NC_011761.1 955905 956570 D identified by glimmer; putative; hypothetical protein 955905..956570 Acidithiobacillus ferrooxidans ATCC 23270 7135911 YP_002425534.1 CDS AFE_1061 NC_011761.1 956536 956898 R identified by glimmer; putative; hypothetical protein complement(956536..956898) Acidithiobacillus ferrooxidans ATCC 23270 7135750 YP_002425535.1 CDS AFE_1063 NC_011761.1 956877 957275 D identified by glimmer; putative; hypothetical protein 956877..957275 Acidithiobacillus ferrooxidans ATCC 23270 7135693 YP_002425536.1 CDS AFE_1064 NC_011761.1 957470 958138 R identified by glimmer; putative; hypothetical protein complement(957470..958138) Acidithiobacillus ferrooxidans ATCC 23270 7136567 YP_002425537.1 CDS AFE_1065 NC_011761.1 958215 958805 D identified by similarity to GB:BAC81997.1; match to protein family HMM PF01464; conjugal transfer protein 958215..958805 Acidithiobacillus ferrooxidans ATCC 23270 7135796 YP_002425538.1 CDS AFE_1066 NC_011761.1 958886 959899 D pilus assembly protein TraF 958886..959899 Acidithiobacillus ferrooxidans ATCC 23270 7134981 YP_002425539.1 CDS AFE_1067 NC_011761.1 959911 961590 D identified by similarity to SP:P15069; pilus assembly protein TraH 959911..961590 Acidithiobacillus ferrooxidans ATCC 23270 7136877 YP_002425540.1 CDS AFE_1068 NC_011761.1 961593 965249 D identified by similarity to GB:AAK61533.1; pilus assembly protein TraG 961593..965249 Acidithiobacillus ferrooxidans ATCC 23270 7135889 YP_002425541.1 CDS AFE_1069 NC_011761.1 965317 965826 D identified by glimmer; putative; hypothetical protein 965317..965826 Acidithiobacillus ferrooxidans ATCC 23270 7135454 YP_002425542.1 CDS AFE_1070 NC_011761.1 966017 966292 R identified by match to protein family HMM PF00216; HU family DNA-binding protein complement(966017..966292) Acidithiobacillus ferrooxidans ATCC 23270 7134749 YP_002425543.1 CDS AFE_1071 NC_011761.1 966291 966830 D identified by similarity to GB:CAD84733.1; hypothetical protein 966291..966830 Acidithiobacillus ferrooxidans ATCC 23270 7135165 YP_002425544.1 CDS AFE_1072 NC_011761.1 966834 967562 D identified by match to protein family HMM PF08808; hypothetical protein 966834..967562 Acidithiobacillus ferrooxidans ATCC 23270 7136595 YP_002425545.1 CDS AFE_1073 NC_011761.1 967633 968574 D identified by match to protein family HMM PF02498; BRO family protein 967633..968574 Acidithiobacillus ferrooxidans ATCC 23270 7135931 YP_002425546.1 CDS AFE_1074 NC_011761.1 968571 968825 D identified by glimmer; putative; hypothetical protein 968571..968825 Acidithiobacillus ferrooxidans ATCC 23270 7136210 YP_002425547.1 CDS AFE_1075 NC_011761.1 968890 970008 D hypothetical protein 968890..970008 Acidithiobacillus ferrooxidans ATCC 23270 7136721 YP_002425548.1 CDS AFE_1076 NC_011761.1 970041 970391 D identified by glimmer; putative; hypothetical protein 970041..970391 Acidithiobacillus ferrooxidans ATCC 23270 7136281 YP_002425549.1 CDS AFE_1077 NC_011761.1 970391 971269 D identified by glimmer; putative; hypothetical protein 970391..971269 Acidithiobacillus ferrooxidans ATCC 23270 7136704 YP_002425550.1 CDS traL NC_011761.1 971257 971535 D identified by similarity to GB:AAM08076.1; match to protein family HMM TIGR02762; type IV conjugative transfer system protein TraL 971257..971535 Acidithiobacillus ferrooxidans ATCC 23270 7136480 YP_002425551.1 CDS traE NC_011761.1 971532 972146 D identified by similarity to GB:AAL27019.1; match to protein family HMM TIGR02761; type IV conjugative transfer system protein TraE 971532..972146 Acidithiobacillus ferrooxidans ATCC 23270 7134822 YP_002425552.1 CDS traK NC_011761.1 972143 973315 D identified by similarity to GB:AAM90706.1; TraK lipoprotein 972143..973315 Acidithiobacillus ferrooxidans ATCC 23270 7136732 YP_002425553.1 CDS AFE_1081 NC_011761.1 973312 974943 D identified by similarity to GB:AAD54048.1; conjugal transfer protein 973312..974943 Acidithiobacillus ferrooxidans ATCC 23270 7135706 YP_002425554.1 CDS traV NC_011761.1 974940 975437 D identified by similarity to SP:P41069; match to protein family HMM TIGR02747; conjugal transfer protein TraV 974940..975437 Acidithiobacillus ferrooxidans ATCC 23270 7137304 YP_002425555.1 CDS traA NC_011761.1 975473 975880 D identified by similarity to GB:AAM08062.1; conjugal transfer protein TraA 975473..975880 Acidithiobacillus ferrooxidans ATCC 23270 7134159 YP_002425556.1 CDS AFE_1083 NC_011761.1 975850 976389 R identified by glimmer; putative; hypothetical protein complement(975850..976389) Acidithiobacillus ferrooxidans ATCC 23270 7137088 YP_002425557.1 CDS AFE_1085 NC_011761.1 976486 977310 D identified by similarity to SP:P77202; thiol:disulfide interchange domain-containing protein 976486..977310 Acidithiobacillus ferrooxidans ATCC 23270 7134304 YP_002425558.1 CDS AFE_1086 NC_011761.1 977363 978286 D identified by glimmer; putative; hypothetical protein 977363..978286 Acidithiobacillus ferrooxidans ATCC 23270 7135618 YP_002425559.1 CDS AFE_1087 NC_011761.1 978463 979653 D identified by match to protein family HMM PF00437; type II/IV secretion system protein 978463..979653 Acidithiobacillus ferrooxidans ATCC 23270 7135964 YP_002425560.1 CDS AFE_1088 NC_011761.1 979643 980407 D identified by similarity to SP:Q44504; thiol:disulfide interchange protein, DsbA family 979643..980407 Acidithiobacillus ferrooxidans ATCC 23270 7134373 YP_002425561.1 CDS traC NC_011761.1 980404 983004 D identified by similarity to SP:P18004; match to protein family HMM TIGR02746; type-IV secretion system protein TraC 980404..983004 Acidithiobacillus ferrooxidans ATCC 23270 7134136 YP_002425562.1 CDS AFE_1090 NC_011761.1 983004 983498 D identified by glimmer; putative; hypothetical protein 983004..983498 Acidithiobacillus ferrooxidans ATCC 23270 7134493 YP_002425563.1 CDS AFE_1091 NC_011761.1 983458 984012 D identified by similarity to SP:P26844; similarity to GB:AAL59670.1; conjugation signal peptidase TraF 983458..984012 Acidithiobacillus ferrooxidans ATCC 23270 7134727 YP_002425564.1 CDS AFE_1093 NC_011761.1 984124 985092 D identified by glimmer; putative; hypothetical protein 984124..985092 Acidithiobacillus ferrooxidans ATCC 23270 7136623 YP_002425565.1 CDS AFE_1092 NC_011761.1 984901 985194 R identified by glimmer; putative; hypothetical protein complement(984901..985194) Acidithiobacillus ferrooxidans ATCC 23270 7135545 YP_002425566.1 CDS AFE_1094 NC_011761.1 985277 985909 D identified by glimmer; putative; hypothetical protein 985277..985909 Acidithiobacillus ferrooxidans ATCC 23270 7134316 YP_002425567.1 CDS AFE_1095 NC_011761.1 985906 987174 D identified by similarity to SP:P18472; pilus assembly protein TraW 985906..987174 Acidithiobacillus ferrooxidans ATCC 23270 7135559 YP_002425568.1 CDS AFE_1096 NC_011761.1 987452 988702 D identified by similarity to SP:P18471; conjugal transfer protein TraU 987452..988702 Acidithiobacillus ferrooxidans ATCC 23270 7135302 YP_002425569.1 CDS AFE_1097 NC_011761.1 988768 991827 D identified by similarity to SP:P24082; conjugal transfer protein TraN 988768..991827 Acidithiobacillus ferrooxidans ATCC 23270 7136043 YP_002425570.1 CDS AFE_1098 NC_011761.1 991885 992124 D identified by similarity to SP:P18534; match to protein family HMM PF04014; pemI family protein 991885..992124 Acidithiobacillus ferrooxidans ATCC 23270 7134712 YP_002425571.1 CDS chpA NC_011761.1 992124 992465 D identified by similarity to SP:P33645; match to protein family HMM PF02452; ChpA protein 992124..992465 Acidithiobacillus ferrooxidans ATCC 23270 7134427 YP_002425572.1 CDS AFE_1100 NC_011761.1 992568 993596 D identified by glimmer; putative; hypothetical protein 992568..993596 Acidithiobacillus ferrooxidans ATCC 23270 7134633 YP_002425573.1 CDS AFE_1101 NC_011761.1 993708 993800 D identified by similarity to PIR:S77285; hypothetical protein 993708..993800 Acidithiobacillus ferrooxidans ATCC 23270 7134311 YP_002425574.1 CDS AFE_1102 NC_011761.1 993850 994122 D identified by glimmer; putative; hypothetical protein 993850..994122 Acidithiobacillus ferrooxidans ATCC 23270 7135446 YP_002425575.1 CDS AFE_1103 NC_011761.1 994216 995241 D identified by glimmer; putative; hypothetical protein 994216..995241 Acidithiobacillus ferrooxidans ATCC 23270 7136367 YP_002425576.1 CDS AFE_1104 NC_011761.1 995241 996518 D identified by similarity to SP:P08407; hypothetical protein 995241..996518 Acidithiobacillus ferrooxidans ATCC 23270 7135350 YP_002425577.1 CDS AFE_1105 NC_011761.1 996622 997212 D Adjacent to a gene for transposase; identified by match to protein family HMM PF00239; transposon resolvase 996622..997212 Acidithiobacillus ferrooxidans ATCC 23270 7135714 YP_002425578.1 CDS AFE_1106 NC_011761.1 997209 998858 D Adjacent to a gene for resolvase; identified by match to protein family HMM TIGR01766; transposon transposase 997209..998858 Acidithiobacillus ferrooxidans ATCC 23270 7136826 YP_002425579.1 CDS AFE_1107 NC_011761.1 999219 999761 D identified by glimmer; putative; hypothetical protein 999219..999761 Acidithiobacillus ferrooxidans ATCC 23270 7134279 YP_002425580.1 CDS AFE_1108 NC_011761.1 999791 1000096 D identified by glimmer; putative; hypothetical protein 999791..1000096 Acidithiobacillus ferrooxidans ATCC 23270 7135406 YP_002425581.1 CDS AFE_1109 NC_011761.1 1000305 1000982 D identified by similarity to GB:BAC41664.1; match to protein family HMM PF08378; hypothetical protein 1000305..1000982 Acidithiobacillus ferrooxidans ATCC 23270 7134630 YP_002425582.1 CDS AFE_1110 NC_011761.1 1001068 1002294 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISAfe3, transposase complement(1001068..1002294) Acidithiobacillus ferrooxidans ATCC 23270 7136597 YP_002425583.1 CDS AFE_1111 NC_011761.1 1002336 1002755 D identified by glimmer; putative; hypothetical protein 1002336..1002755 Acidithiobacillus ferrooxidans ATCC 23270 7135901 YP_002425584.1 CDS AFE_1112 NC_011761.1 1002755 1003066 D identified by glimmer; putative; hypothetical protein 1002755..1003066 Acidithiobacillus ferrooxidans ATCC 23270 7136584 YP_002425585.1 CDS AFE_1113 NC_011761.1 1003063 1003296 D identified by glimmer; putative; hypothetical protein 1003063..1003296 Acidithiobacillus ferrooxidans ATCC 23270 7136220 YP_002425586.1 CDS htpX-1 NC_011761.1 1003537 1004358 D identified by similarity to SP:P23894; match to protein family HMM PF01435; heat shock protein HtpX 1003537..1004358 Acidithiobacillus ferrooxidans ATCC 23270 7135617 YP_002425587.1 CDS AFE_1115 NC_011761.1 1004470 1005354 D identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein 1004470..1005354 Acidithiobacillus ferrooxidans ATCC 23270 7135218 YP_002425588.1 CDS AFE_1116 NC_011761.1 1005351 1005590 D identified by glimmer; putative; hypothetical protein 1005351..1005590 Acidithiobacillus ferrooxidans ATCC 23270 7135433 YP_002425589.1 CDS AFE_1117 NC_011761.1 1005805 1006014 D identified by similarity to GB:CAB97518.1; hypothetical protein 1005805..1006014 Acidithiobacillus ferrooxidans ATCC 23270 7135903 YP_002425590.1 CDS AFE_1118 NC_011761.1 1006007 1006258 D identified by glimmer; putative; hypothetical protein 1006007..1006258 Acidithiobacillus ferrooxidans ATCC 23270 7136512 YP_002425591.1 CDS AFE_1119 NC_011761.1 1006239 1006487 D identified by glimmer; putative; hypothetical protein 1006239..1006487 Acidithiobacillus ferrooxidans ATCC 23270 7136705 YP_002425592.1 CDS AFE_1120 NC_011761.1 1006534 1007487 D identified by glimmer; putative; hypothetical protein 1006534..1007487 Acidithiobacillus ferrooxidans ATCC 23270 7134225 YP_002425593.1 CDS AFE_1121 NC_011761.1 1007484 1008092 D identified by glimmer; putative; hypothetical protein 1007484..1008092 Acidithiobacillus ferrooxidans ATCC 23270 7136134 YP_002425594.1 CDS AFE_1122 NC_011761.1 1008142 1008399 D identified by similarity to GB:BAB48203.1; hypothetical protein 1008142..1008399 Acidithiobacillus ferrooxidans ATCC 23270 7134747 YP_002425595.1 CDS AFE_1123 NC_011761.1 1008704 1009240 R identified by glimmer; putative; hypothetical protein complement(1008704..1009240) Acidithiobacillus ferrooxidans ATCC 23270 7135127 YP_002425596.1 CDS AFE_1124 NC_011761.1 1009216 1009458 D identified by glimmer; putative; hypothetical protein 1009216..1009458 Acidithiobacillus ferrooxidans ATCC 23270 7137253 YP_002425597.1 CDS AFE_1125 NC_011761.1 1009464 1009790 D identified by glimmer; putative; hypothetical protein 1009464..1009790 Acidithiobacillus ferrooxidans ATCC 23270 7137106 YP_002425598.1 CDS AFE_1126 NC_011761.1 1009811 1010182 D identified by glimmer; putative; hypothetical protein 1009811..1010182 Acidithiobacillus ferrooxidans ATCC 23270 7134416 YP_002425599.1 CDS AFE_1127 NC_011761.1 1010179 1010730 D identified by similarity to PIR:A83628; match to protein family HMM PF05014; nucleoside 2-deoxyribosyltransferase family protein 1010179..1010730 Acidithiobacillus ferrooxidans ATCC 23270 7136592 YP_002425600.1 CDS AFE_1128 NC_011761.1 1010761 1011288 D identified by glimmer; putative; hypothetical protein 1010761..1011288 Acidithiobacillus ferrooxidans ATCC 23270 7135168 YP_002425601.1 CDS AFE_1129 NC_011761.1 1011311 1011439 D lipoprotein 1011311..1011439 Acidithiobacillus ferrooxidans ATCC 23270 7136228 YP_002425602.1 CDS AFE_1130 NC_011761.1 1011478 1011603 D identified by glimmer; putative; hypothetical protein 1011478..1011603 Acidithiobacillus ferrooxidans ATCC 23270 7134613 YP_002425603.1 CDS AFE_1131 NC_011761.1 1012107 1012523 D identified by glimmer; putative; hypothetical protein 1012107..1012523 Acidithiobacillus ferrooxidans ATCC 23270 7134042 YP_002425604.1 CDS AFE_1133 NC_011761.1 1012629 1013108 D identified by similarity to GB:AAN68171.1; hypothetical protein 1012629..1013108 Acidithiobacillus ferrooxidans ATCC 23270 7134132 YP_002425605.1 CDS AFE_1132 NC_011761.1 1013038 1013496 R identified by glimmer; putative; hypothetical protein complement(1013038..1013496) Acidithiobacillus ferrooxidans ATCC 23270 7135462 YP_002425606.1 CDS AFE_1134 NC_011761.1 1013972 1014079 R identified by glimmer; putative; hypothetical protein complement(1013972..1014079) Acidithiobacillus ferrooxidans ATCC 23270 7136510 YP_002425607.1 CDS AFE_1135 NC_011761.1 1014070 1014771 D identified by glimmer; putative; hypothetical protein 1014070..1014771 Acidithiobacillus ferrooxidans ATCC 23270 7136971 YP_002425608.1 CDS AFE_1136 NC_011761.1 1014753 1015283 D identified by similarity to PIR:AH3439; match to protein family HMM PF09335; DedA family membrane protein 1014753..1015283 Acidithiobacillus ferrooxidans ATCC 23270 7134697 YP_002425609.1 CDS AFE_1137 NC_011761.1 1015352 1017589 D identified by match to protein family HMM PF00580; ATP-dependent DNA helicase, UvrD/REP family 1015352..1017589 Acidithiobacillus ferrooxidans ATCC 23270 7136239 YP_002425610.1 CDS AFE_1138 NC_011761.1 1017579 1017854 D identified by glimmer; putative; hypothetical protein 1017579..1017854 Acidithiobacillus ferrooxidans ATCC 23270 7134340 YP_002425611.1 CDS AFE_1140 NC_011761.1 1017855 1018163 D identified by similarity to GB:BAC09421.1; hypothetical protein 1017855..1018163 Acidithiobacillus ferrooxidans ATCC 23270 7136746 YP_002425612.1 CDS AFE_1139 NC_011761.1 1018070 1018246 R identified by glimmer; putative; hypothetical protein complement(1018070..1018246) Acidithiobacillus ferrooxidans ATCC 23270 7136276 YP_002425613.1 CDS AFE_1141 NC_011761.1 1018220 1019098 D identified by similarity to PIR:H90361; hypothetical protein 1018220..1019098 Acidithiobacillus ferrooxidans ATCC 23270 7136706 YP_002425614.1 CDS AFE_1142 NC_011761.1 1019378 1020604 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISAfe3, transposase 1019378..1020604 Acidithiobacillus ferrooxidans ATCC 23270 7134963 YP_002425615.1 CDS AFE_1143 NC_011761.1 1020609 1021214 R identified by glimmer; putative; hypothetical protein complement(1020609..1021214) Acidithiobacillus ferrooxidans ATCC 23270 7137283 YP_002425616.1 CDS AFE_1144 NC_011761.1 1021715 1021924 D identified by similarity to SP:Q8XYY7; dihydroorotate dehydrogenase domain-containing protein 1021715..1021924 Acidithiobacillus ferrooxidans ATCC 23270 7135216 YP_002425617.1 CDS AFE_1145 NC_011761.1 1022137 1023042 R identified by similarity to SP:P46352; similarity to SP:Q8YJP2; match to protein family HMM PF00589; tyrosine recombinase, phage integrase family complement(1022137..1023042) Acidithiobacillus ferrooxidans ATCC 23270 7134850 YP_002425618.1 CDS AFE_1146 NC_011761.1 1023249 1023611 D identified by glimmer; putative; hypothetical protein 1023249..1023611 Acidithiobacillus ferrooxidans ATCC 23270 7134368 YP_002425619.1 CDS AFE_1147 NC_011761.1 1023623 1023889 D identified by glimmer; putative; hypothetical protein 1023623..1023889 Acidithiobacillus ferrooxidans ATCC 23270 7134568 YP_002425620.1 CDS AFE_1148 NC_011761.1 1023901 1024455 D identified by glimmer; putative; hypothetical protein 1023901..1024455 Acidithiobacillus ferrooxidans ATCC 23270 7135876 YP_002425621.1 CDS AFE_1149 NC_011761.1 1024642 1025079 R identified by glimmer; putative; hypothetical protein complement(1024642..1025079) Acidithiobacillus ferrooxidans ATCC 23270 7135291 YP_002425622.1 CDS AFE_1150 NC_011761.1 1025220 1025762 R identified by glimmer; putative; hypothetical protein complement(1025220..1025762) Acidithiobacillus ferrooxidans ATCC 23270 7136317 YP_002425623.1 CDS AFE_1151 NC_011761.1 1025772 1025867 R identified by glimmer; putative; hypothetical protein complement(1025772..1025867) Acidithiobacillus ferrooxidans ATCC 23270 7135824 YP_002425624.1 CDS AFE_1152 NC_011761.1 1025907 1026452 R identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein complement(1025907..1026452) Acidithiobacillus ferrooxidans ATCC 23270 7136201 YP_002425625.1 CDS AFE_1153 NC_011761.1 1026498 1026725 R identified by glimmer; putative; hypothetical protein complement(1026498..1026725) Acidithiobacillus ferrooxidans ATCC 23270 7135732 YP_002425626.1 CDS AFE_1154 NC_011761.1 1026725 1027123 R identified by glimmer; putative; hypothetical protein complement(1026725..1027123) Acidithiobacillus ferrooxidans ATCC 23270 7134032 YP_002425627.1 CDS AFE_1169 NC_011761.1 1029150 1029401 R identified by glimmer; putative; hypothetical protein complement(1029150..1029401) Acidithiobacillus ferrooxidans ATCC 23270 7136023 YP_002425628.1 CDS AFE_1170 NC_011761.1 1029474 1029983 D identified by glimmer; putative; hypothetical protein 1029474..1029983 Acidithiobacillus ferrooxidans ATCC 23270 7136538 YP_002425629.1 CDS AFE_1174 NC_011761.1 1030242 1030520 R identified by glimmer; putative; hypothetical protein complement(1030242..1030520) Acidithiobacillus ferrooxidans ATCC 23270 7135865 YP_002425630.1 CDS AFE_1176 NC_011761.1 1031115 1031396 R identified by glimmer; putative; hypothetical protein complement(1031115..1031396) Acidithiobacillus ferrooxidans ATCC 23270 7135840 YP_002425631.1 CDS AFE_1178 NC_011761.1 1031930 1032673 R identified by glimmer; putative; hypothetical protein complement(1031930..1032673) Acidithiobacillus ferrooxidans ATCC 23270 7135838 YP_002425632.1 CDS AFE_1195 NC_011761.1 1036224 1036385 R identified by glimmer; putative; hypothetical protein complement(1036224..1036385) Acidithiobacillus ferrooxidans ATCC 23270 7135998 YP_002425633.1 CDS AFE_1196 NC_011761.1 1036357 1036500 D identified by glimmer; putative; hypothetical protein 1036357..1036500 Acidithiobacillus ferrooxidans ATCC 23270 7135109 YP_002425634.1 CDS AFE_1197 NC_011761.1 1036579 1037418 R identified by similarity to GB:BAC74789.1; hypothetical protein complement(1036579..1037418) Acidithiobacillus ferrooxidans ATCC 23270 7136349 YP_002425635.1 CDS AFE_1198 NC_011761.1 1037647 1037916 R identified by glimmer; putative; hypothetical protein complement(1037647..1037916) Acidithiobacillus ferrooxidans ATCC 23270 7134602 YP_002425636.1 CDS rnhA-1 NC_011761.1 1037913 1038350 R identified by match to protein family HMM PF00075; ribonuclease HI complement(1037913..1038350) Acidithiobacillus ferrooxidans ATCC 23270 7136929 YP_002425637.1 CDS AFE_1200 NC_011761.1 1038371 1038994 R identified by glimmer; putative; hypothetical protein complement(1038371..1038994) Acidithiobacillus ferrooxidans ATCC 23270 7136657 YP_002425638.1 CDS tnsA-1 NC_011761.1 1039166 1039996 D identified by similarity to PIR:T45494; match to protein family HMM PF08721; match to protein family HMM PF08722; Tn5468, transposase A 1039166..1039996 Acidithiobacillus ferrooxidans ATCC 23270 7135027 YP_002425639.1 CDS tnsB-1 NC_011761.1 1039993 1042161 D identified by similarity to PIR:T45495; Tn5468, transposase B 1039993..1042161 Acidithiobacillus ferrooxidans ATCC 23270 7136957 YP_002425640.1 CDS tnsC-1 NC_011761.1 1042142 1043800 D identified by similarity to PIR:T45496; Tn5468, transposition protein C 1042142..1043800 Acidithiobacillus ferrooxidans ATCC 23270 7136870 YP_002425641.1 CDS tnsD-1 NC_011761.1 1043812 1045641 D identified by similarity to PIR:T45497; Tn5468, transposition protein D 1043812..1045641 Acidithiobacillus ferrooxidans ATCC 23270 7136505 YP_002425642.1 CDS AFE_1205 NC_011761.1 1045661 1047328 D identified by similarity to PIR:T45498; Tn5468, orf5 1045661..1047328 Acidithiobacillus ferrooxidans ATCC 23270 7136638 YP_002425643.1 CDS AFE_1206 NC_011761.1 1047410 1050838 R identified by glimmer; putative; hypothetical protein complement(1047410..1050838) Acidithiobacillus ferrooxidans ATCC 23270 7134997 YP_002425644.1 CDS AFE_1207 NC_011761.1 1050913 1051005 R identified by glimmer; putative; hypothetical protein complement(1050913..1051005) Acidithiobacillus ferrooxidans ATCC 23270 7136058 YP_002425645.1 CDS AFE_1208 NC_011761.1 1051042 1054017 D identified by similarity to GB:CAC14218.1; match to protein family HMM TIGR01414; outer membrane autotransporter TapA 1051042..1054017 Acidithiobacillus ferrooxidans ATCC 23270 7136525 YP_002425646.1 CDS AFE_1209 NC_011761.1 1054149 1064603 D identified by match to protein family HMM TIGR01414; outer membrane autotransporter 1054149..1064603 Acidithiobacillus ferrooxidans ATCC 23270 7134440 YP_002425647.1 CDS AFE_1210 NC_011761.1 1064536 1065282 D identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase 1064536..1065282 Acidithiobacillus ferrooxidans ATCC 23270 7135623 YP_002425648.1 CDS AFE_1211 NC_011761.1 1065275 1067362 D identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07721; TPR domain/sulfotransferase domain-containing protein 1065275..1067362 Acidithiobacillus ferrooxidans ATCC 23270 7134120 YP_002425649.1 CDS AFE_1212 NC_011761.1 1067359 1068516 D identified by similarity to GB:CAD16952.1; hypothetical protein 1067359..1068516 Acidithiobacillus ferrooxidans ATCC 23270 7136084 YP_002425650.1 CDS AFE_1213 NC_011761.1 1069192 1069338 R identified by glimmer; putative; hypothetical protein complement(1069192..1069338) Acidithiobacillus ferrooxidans ATCC 23270 7135484 YP_002425651.1 CDS AFE_1214 NC_011761.1 1069934 1070398 R identified by glimmer; putative; hypothetical protein complement(1069934..1070398) Acidithiobacillus ferrooxidans ATCC 23270 7134227 YP_002425652.1 CDS AFE_1215 NC_011761.1 1070500 1071726 R identified by match to protein family HMM PF01385; match to protein family HMM PF07282; match to protein family HMM TIGR01766; ISAfe8, transposase complement(1070500..1071726) Acidithiobacillus ferrooxidans ATCC 23270 7135563 YP_002425653.1 CDS AFE_1216 NC_011761.1 1071811 1072161 R identified by glimmer; putative; hypothetical protein complement(1071811..1072161) Acidithiobacillus ferrooxidans ATCC 23270 7134325 YP_002425654.1 CDS AFE_1217 NC_011761.1 1072193 1072804 R identified by match to protein family HMM PF03167; uracil-DNA glycosylase, family 4 complement(1072193..1072804) Acidithiobacillus ferrooxidans ATCC 23270 7134608 YP_002425655.1 CDS AFE_1218 NC_011761.1 1072804 1073520 R identified by similarity to PIR:A97990; hypothetical protein complement(1072804..1073520) Acidithiobacillus ferrooxidans ATCC 23270 7134166 YP_002425656.1 CDS AFE_1220 NC_011761.1 1074584 1075369 R identified by glimmer; putative; hypothetical protein complement(1074584..1075369) Acidithiobacillus ferrooxidans ATCC 23270 7135591 YP_002425657.1 CDS AFE_1221 NC_011761.1 1075392 1076006 R identified by similarity to SP:P11409; modification methylase complement(1075392..1076006) Acidithiobacillus ferrooxidans ATCC 23270 7134998 YP_002425658.1 CDS AFE_1222 NC_011761.1 1076212 1076925 D identified by glimmer; putative; hypothetical protein 1076212..1076925 Acidithiobacillus ferrooxidans ATCC 23270 7136521 YP_002425659.1 CDS AFE_1224 NC_011761.1 1076934 1077062 D identified by glimmer; putative; hypothetical protein 1076934..1077062 Acidithiobacillus ferrooxidans ATCC 23270 7136096 YP_002425660.1 CDS AFE_1223 NC_011761.1 1076987 1077580 R identified by glimmer; putative; hypothetical protein complement(1076987..1077580) Acidithiobacillus ferrooxidans ATCC 23270 7135626 YP_002425661.1 CDS AFE_1225 NC_011761.1 1077701 1077793 R identified by glimmer; putative; hypothetical protein complement(1077701..1077793) Acidithiobacillus ferrooxidans ATCC 23270 7135203 YP_002425662.1 CDS AFE_1226 NC_011761.1 1077839 1080466 R identified by match to protein family HMM PF02463; GTP-binding protein complement(1077839..1080466) Acidithiobacillus ferrooxidans ATCC 23270 7134628 YP_002425663.1 CDS AFE_1227 NC_011761.1 1080466 1081581 R identified by match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein complement(1080466..1081581) Acidithiobacillus ferrooxidans ATCC 23270 7134297 YP_002425664.1 CDS AFE_1228 NC_011761.1 1081774 1082214 D identified by glimmer; putative; hypothetical protein 1081774..1082214 Acidithiobacillus ferrooxidans ATCC 23270 7134752 YP_002425665.1 CDS AFE_1229 NC_011761.1 1082240 1082926 R identified by match to protein family HMM PF00563; EAL domain-containing protein complement(1082240..1082926) Acidithiobacillus ferrooxidans ATCC 23270 7134409 YP_002425666.1 CDS AFE_1230 NC_011761.1 1082930 1084759 R identified by match to protein family HMM PF00533; match to protein family HMM PF01653; match to protein family HMM PF03120; NAD-dependent DNA ligase complement(1082930..1084759) Acidithiobacillus ferrooxidans ATCC 23270 7135215 YP_002425667.1 CDS AFE_1231 NC_011761.1 1084756 1084983 R identified by glimmer; putative; hypothetical protein complement(1084756..1084983) Acidithiobacillus ferrooxidans ATCC 23270 7136440 YP_002425668.1 CDS AFE_1232 NC_011761.1 1085271 1086209 R identified by glimmer; putative; hypothetical protein complement(1085271..1086209) Acidithiobacillus ferrooxidans ATCC 23270 7135147 YP_002425669.1 CDS AFE_1233 NC_011761.1 1086194 1086649 R identified by glimmer; putative; hypothetical protein complement(1086194..1086649) Acidithiobacillus ferrooxidans ATCC 23270 7136169 YP_002425670.1 CDS AFE_1234 NC_011761.1 1086655 1086978 R identified by match to protein family HMM PF05433; lipoprotein complement(1086655..1086978) Acidithiobacillus ferrooxidans ATCC 23270 7137248 YP_002425671.1 CDS AFE_1235 NC_011761.1 1087010 1087678 R lipoprotein complement(1087010..1087678) Acidithiobacillus ferrooxidans ATCC 23270 7134405 YP_002425672.1 CDS AFE_1236 NC_011761.1 1087692 1088339 R identified by glimmer; putative; hypothetical protein complement(1087692..1088339) Acidithiobacillus ferrooxidans ATCC 23270 7134213 YP_002425673.1 CDS AFE_1237 NC_011761.1 1088355 1088720 R identified by glimmer; putative; hypothetical protein complement(1088355..1088720) Acidithiobacillus ferrooxidans ATCC 23270 7134208 YP_002425674.1 CDS AFE_1238 NC_011761.1 1088997 1089170 R identified by glimmer; putative; hypothetical protein complement(1088997..1089170) Acidithiobacillus ferrooxidans ATCC 23270 7137207 YP_002425675.1 CDS AFE_1239 NC_011761.1 1089174 1089374 R identified by glimmer; putative; hypothetical protein complement(1089174..1089374) Acidithiobacillus ferrooxidans ATCC 23270 7136938 YP_002425676.1 CDS AFE_1240 NC_011761.1 1089374 1089718 R identified by glimmer; putative; hypothetical protein complement(1089374..1089718) Acidithiobacillus ferrooxidans ATCC 23270 7136088 YP_002425677.1 CDS AFE_1242 NC_011761.1 1089791 1090249 D identified by glimmer; putative; hypothetical protein 1089791..1090249 Acidithiobacillus ferrooxidans ATCC 23270 7134873 YP_002425678.1 CDS AFE_1241 NC_011761.1 1090147 1090422 R identified by match to protein family HMM PF00216; DNA-binding protein HU family protein complement(1090147..1090422) Acidithiobacillus ferrooxidans ATCC 23270 7137306 YP_002425679.1 CDS AFE_1243 NC_011761.1 1090415 1090729 R identified by glimmer; putative; hypothetical protein complement(1090415..1090729) Acidithiobacillus ferrooxidans ATCC 23270 7134442 YP_002425680.1 CDS AFE_1244 NC_011761.1 1090726 1091016 R identified by glimmer; putative; hypothetical protein complement(1090726..1091016) Acidithiobacillus ferrooxidans ATCC 23270 7134762 YP_002425681.1 CDS AFE_1245 NC_011761.1 1091016 1091528 R identified by glimmer; putative; hypothetical protein complement(1091016..1091528) Acidithiobacillus ferrooxidans ATCC 23270 7135699 YP_002425682.1 CDS AFE_1246 NC_011761.1 1091625 1091840 D identified by glimmer; putative; hypothetical protein 1091625..1091840 Acidithiobacillus ferrooxidans ATCC 23270 7134330 YP_002425683.1 CDS AFE_1247 NC_011761.1 1091852 1092022 D identified by glimmer; putative; hypothetical protein 1091852..1092022 Acidithiobacillus ferrooxidans ATCC 23270 7135187 YP_002425684.1 CDS AFE_1248 NC_011761.1 1092194 1092451 R identified by glimmer; putative; hypothetical protein complement(1092194..1092451) Acidithiobacillus ferrooxidans ATCC 23270 7135787 YP_002425685.1 CDS AFE_1249 NC_011761.1 1092444 1093496 R identified by glimmer; putative; hypothetical protein complement(1092444..1093496) Acidithiobacillus ferrooxidans ATCC 23270 7134647 YP_002425686.1 CDS AFE_1250 NC_011761.1 1093608 1093799 D identified by glimmer; putative; hypothetical protein 1093608..1093799 Acidithiobacillus ferrooxidans ATCC 23270 7136698 YP_002425687.1 CDS AFE_1251 NC_011761.1 1093796 1095655 D lipoprotein 1093796..1095655 Acidithiobacillus ferrooxidans ATCC 23270 7137269 YP_002425688.1 CDS AFE_1253 NC_011761.1 1095652 1096761 D identified by glimmer; putative; hypothetical protein 1095652..1096761 Acidithiobacillus ferrooxidans ATCC 23270 7134978 YP_002425689.1 CDS AFE_1252 NC_011761.1 1096686 1097222 R identified by glimmer; putative; hypothetical protein complement(1096686..1097222) Acidithiobacillus ferrooxidans ATCC 23270 7134784 YP_002425690.1 CDS AFE_1254 NC_011761.1 1097205 1099712 D identified by glimmer; putative; hypothetical protein 1097205..1099712 Acidithiobacillus ferrooxidans ATCC 23270 7136766 YP_002425691.1 CDS AFE_1255 NC_011761.1 1099712 1100605 D identified by glimmer; putative; hypothetical protein 1099712..1100605 Acidithiobacillus ferrooxidans ATCC 23270 7136260 YP_002425692.1 CDS AFE_1256 NC_011761.1 1100598 1101200 D identified by glimmer; putative; hypothetical protein 1100598..1101200 Acidithiobacillus ferrooxidans ATCC 23270 7134355 YP_002425693.1 CDS AFE_1257 NC_011761.1 1101328 1102272 R identified by glimmer; putative; hypothetical protein complement(1101328..1102272) Acidithiobacillus ferrooxidans ATCC 23270 7135080 YP_002425694.1 CDS AFE_1258 NC_011761.1 1102269 1103558 R DNA topoisomerase domain-containing protein complement(1102269..1103558) Acidithiobacillus ferrooxidans ATCC 23270 7136934 YP_002425695.1 CDS AFE_1259 NC_011761.1 1103578 1103790 R identified by glimmer; putative; hypothetical protein complement(1103578..1103790) Acidithiobacillus ferrooxidans ATCC 23270 7134585 YP_002425696.1 CDS ssb-3 NC_011761.1 1103755 1104240 D identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein 1103755..1104240 Acidithiobacillus ferrooxidans ATCC 23270 7135763 YP_002425697.1 CDS AFE_1261 NC_011761.1 1104272 1104502 D identified by glimmer; putative; hypothetical protein 1104272..1104502 Acidithiobacillus ferrooxidans ATCC 23270 7134846 YP_002425698.1 CDS AFE_1262 NC_011761.1 1104548 1104748 R identified by glimmer; putative; hypothetical protein complement(1104548..1104748) Acidithiobacillus ferrooxidans ATCC 23270 7135232 YP_002425699.1 CDS AFE_1263 NC_011761.1 1104831 1105514 R identified by glimmer; putative; hypothetical protein complement(1104831..1105514) Acidithiobacillus ferrooxidans ATCC 23270 7134862 YP_002425700.1 CDS AFE_1264 NC_011761.1 1105489 1109700 R identified by glimmer; putative; hypothetical protein complement(1105489..1109700) Acidithiobacillus ferrooxidans ATCC 23270 7134618 YP_002425701.1 CDS AFE_1265 NC_011761.1 1109805 1111031 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISAfe3, transposase complement(1109805..1111031) Acidithiobacillus ferrooxidans ATCC 23270 7137020 YP_002425702.1 CDS AFE_1266 NC_011761.1 1111173 1113290 R identified by glimmer; putative; hypothetical protein complement(1111173..1113290) Acidithiobacillus ferrooxidans ATCC 23270 7136758 YP_002425703.1 CDS AFE_1267 NC_011761.1 1113548 1113655 R identified by glimmer; putative; hypothetical protein complement(1113548..1113655) Acidithiobacillus ferrooxidans ATCC 23270 7134889 YP_002425704.1 CDS AFE_1269 NC_011761.1 1113674 1114078 D identified by glimmer; putative; hypothetical protein 1113674..1114078 Acidithiobacillus ferrooxidans ATCC 23270 7135150 YP_002425705.1 CDS AFE_1268 NC_011761.1 1114017 1114166 R identified by glimmer; putative; hypothetical protein complement(1114017..1114166) Acidithiobacillus ferrooxidans ATCC 23270 7135588 YP_002425706.1 CDS AFE_1270 NC_011761.1 1114293 1114928 D ssDNA-binding protein 1114293..1114928 Acidithiobacillus ferrooxidans ATCC 23270 7137086 YP_002425707.1 CDS AFE_1271 NC_011761.1 1115118 1115372 D identified by glimmer; putative; hypothetical protein 1115118..1115372 Acidithiobacillus ferrooxidans ATCC 23270 7134012 YP_002425708.1 CDS AFE_1272 NC_011761.1 1115383 1115778 D identified by glimmer; putative; hypothetical protein 1115383..1115778 Acidithiobacillus ferrooxidans ATCC 23270 7137136 YP_002425709.1 CDS AFE_1273 NC_011761.1 1115993 1116475 D identified by glimmer; putative; hypothetical protein 1115993..1116475 Acidithiobacillus ferrooxidans ATCC 23270 7136408 YP_002425710.1 CDS AFE_1274 NC_011761.1 1116533 1116886 D identified by glimmer; putative; hypothetical protein 1116533..1116886 Acidithiobacillus ferrooxidans ATCC 23270 7135284 YP_002425711.1 CDS AFE_1275 NC_011761.1 1116883 1117794 D hypothetical protein 1116883..1117794 Acidithiobacillus ferrooxidans ATCC 23270 7135097 YP_002425712.1 CDS AFE_1276 NC_011761.1 1117910 1118200 D identified by glimmer; putative; hypothetical protein 1117910..1118200 Acidithiobacillus ferrooxidans ATCC 23270 7134398 YP_002425713.1 CDS AFE_1277 NC_011761.1 1118335 1118781 D identified by glimmer; putative; hypothetical protein 1118335..1118781 Acidithiobacillus ferrooxidans ATCC 23270 7136778 YP_002425714.1 CDS AFE_1278 NC_011761.1 1118792 1119235 D identified by glimmer; putative; hypothetical protein 1118792..1119235 Acidithiobacillus ferrooxidans ATCC 23270 7137277 YP_002425715.1 CDS AFE_1279 NC_011761.1 1119247 1119705 D identified by glimmer; putative; hypothetical protein 1119247..1119705 Acidithiobacillus ferrooxidans ATCC 23270 7135450 YP_002425716.1 CDS AFE_1280 NC_011761.1 1119904 1120218 R identified by glimmer; putative; hypothetical protein complement(1119904..1120218) Acidithiobacillus ferrooxidans ATCC 23270 7135969 YP_002425717.1 CDS AFE_1281 NC_011761.1 1120192 1120425 D identified by glimmer; putative; hypothetical protein 1120192..1120425 Acidithiobacillus ferrooxidans ATCC 23270 7136975 YP_002425718.1 CDS AFE_1282 NC_011761.1 1120685 1121170 D identified by glimmer; putative; hypothetical protein 1120685..1121170 Acidithiobacillus ferrooxidans ATCC 23270 7134616 YP_002425719.1 CDS AFE_1283 NC_011761.1 1121293 1122102 D identified by similarity to PIR:F82867; hypothetical protein 1121293..1122102 Acidithiobacillus ferrooxidans ATCC 23270 7137176 YP_002425720.1 CDS AFE_1284 NC_011761.1 1122105 1122551 D identified by glimmer; putative; hypothetical protein 1122105..1122551 Acidithiobacillus ferrooxidans ATCC 23270 7135295 YP_002425721.1 CDS AFE_1285 NC_011761.1 1122692 1123012 D identified by similarity to GB:AAL55518.2; hypothetical protein 1122692..1123012 Acidithiobacillus ferrooxidans ATCC 23270 7135155 YP_002425722.1 CDS AFE_1286 NC_011761.1 1123040 1123954 D identified by similarity to GB:AAL59709.1; match to protein family HMM TIGR03033; hypothetical protein 1123040..1123954 Acidithiobacillus ferrooxidans ATCC 23270 7135255 YP_002425723.1 CDS AFE_1287 NC_011761.1 1124083 1124322 D identified by glimmer; putative; hypothetical protein 1124083..1124322 Acidithiobacillus ferrooxidans ATCC 23270 7135035 YP_002425724.1 CDS AFE_1288 NC_011761.1 1124322 1124777 D identified by glimmer; putative; hypothetical protein 1124322..1124777 Acidithiobacillus ferrooxidans ATCC 23270 7136333 YP_002425725.1 CDS AFE_1289 NC_011761.1 1124808 1125167 D identified by glimmer; putative; hypothetical protein 1124808..1125167 Acidithiobacillus ferrooxidans ATCC 23270 7135347 YP_002425726.1 CDS AFE_1290 NC_011761.1 1125164 1125601 D identified by glimmer; putative; hypothetical protein 1125164..1125601 Acidithiobacillus ferrooxidans ATCC 23270 7137175 YP_002425727.1 CDS AFE_1291 NC_011761.1 1125620 1126051 D identified by glimmer; putative; hypothetical protein 1125620..1126051 Acidithiobacillus ferrooxidans ATCC 23270 7134627 YP_002425728.1 CDS AFE_1292 NC_011761.1 1126191 1128125 D identified by similarity to GB:AAL59705.1; hypothetical protein 1126191..1128125 Acidithiobacillus ferrooxidans ATCC 23270 7134264 YP_002425729.1 CDS AFE_1293 NC_011761.1 1128277 1128618 D identified by glimmer; putative; hypothetical protein 1128277..1128618 Acidithiobacillus ferrooxidans ATCC 23270 7134167 YP_002425730.1 CDS AFE_1294 NC_011761.1 1128593 1128763 D identified by glimmer; putative; hypothetical protein 1128593..1128763 Acidithiobacillus ferrooxidans ATCC 23270 7136241 YP_002425731.1 CDS AFE_1295 NC_011761.1 1128803 1129441 D identified by match to protein family HMM PF00072; match to protein family HMM PF02954; DNA-binding response regulator 1128803..1129441 Acidithiobacillus ferrooxidans ATCC 23270 7137276 YP_002425732.1 CDS AFE_1296 NC_011761.1 1129497 1130459 D identified by similarity to SP:Q47083; match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1129497..1130459 Acidithiobacillus ferrooxidans ATCC 23270 7134092 YP_002425733.1 CDS AFE_1297 NC_011761.1 1130614 1131534 D identified by match to protein family HMM PF07728; cobalamin biosynthesis protein, CobS family 1130614..1131534 Acidithiobacillus ferrooxidans ATCC 23270 7135176 YP_002425734.1 CDS AFE_1298 NC_011761.1 1131706 1131906 D identified by glimmer; putative; hypothetical protein 1131706..1131906 Acidithiobacillus ferrooxidans ATCC 23270 7135665 YP_002425735.1 CDS AFE_1299 NC_011761.1 1131919 1132812 D identified by glimmer; putative; hypothetical protein 1131919..1132812 Acidithiobacillus ferrooxidans ATCC 23270 7137203 YP_002425736.1 CDS AFE_1300 NC_011761.1 1132941 1133351 D identified by glimmer; putative; hypothetical protein 1132941..1133351 Acidithiobacillus ferrooxidans ATCC 23270 7135505 YP_002425737.1 CDS AFE_1301 NC_011761.1 1133482 1134501 D identified by glimmer; putative; hypothetical protein 1133482..1134501 Acidithiobacillus ferrooxidans ATCC 23270 7136233 YP_002425738.1 CDS AFE_1302 NC_011761.1 1134627 1134971 D identified by glimmer; putative; hypothetical protein 1134627..1134971 Acidithiobacillus ferrooxidans ATCC 23270 7135929 YP_002425739.1 CDS AFE_1303 NC_011761.1 1135418 1135639 R identified by similarity to SP:O59347; hypothetical protein complement(1135418..1135639) Acidithiobacillus ferrooxidans ATCC 23270 7135375 YP_002425740.1 CDS AFE_1304 NC_011761.1 1135661 1136290 D A gene for transposase is adjacent; identified by match to protein family HMM PF00239; match to protein family HMM PF00376; transposon resolvase 1135661..1136290 Acidithiobacillus ferrooxidans ATCC 23270 7134871 YP_002425741.1 CDS AFE_1305 NC_011761.1 1136287 1137681 D A gene for resolvase is adjacent.; transposon transposase 1136287..1137681 Acidithiobacillus ferrooxidans ATCC 23270 7134509 YP_002425742.1 CDS AFE_1307 NC_011761.1 1137805 1138149 D identified by glimmer; putative; hypothetical protein 1137805..1138149 Acidithiobacillus ferrooxidans ATCC 23270 7134072 YP_002425743.1 CDS AFE_1306 NC_011761.1 1138008 1138391 R identified by glimmer; putative; hypothetical protein complement(1138008..1138391) Acidithiobacillus ferrooxidans ATCC 23270 7136368 YP_002425744.1 CDS AFE_1308 NC_011761.1 1138370 1139140 D identified by glimmer; putative; hypothetical protein 1138370..1139140 Acidithiobacillus ferrooxidans ATCC 23270 7134536 YP_002425745.1 CDS AFE_1309 NC_011761.1 1139409 1139561 R identified by glimmer; putative; hypothetical protein complement(1139409..1139561) Acidithiobacillus ferrooxidans ATCC 23270 7137148 YP_002425746.1 CDS AFE_1310 NC_011761.1 1139512 1139631 D identified by glimmer; putative; hypothetical protein 1139512..1139631 Acidithiobacillus ferrooxidans ATCC 23270 7134347 YP_002425747.1 CDS AFE_1311 NC_011761.1 1139674 1140201 D identified by glimmer; putative; hypothetical protein 1139674..1140201 Acidithiobacillus ferrooxidans ATCC 23270 7134121 YP_002425748.1 CDS AFE_1312 NC_011761.1 1140247 1140414 R identified by glimmer; putative; hypothetical protein complement(1140247..1140414) Acidithiobacillus ferrooxidans ATCC 23270 7134746 YP_002425749.1 CDS AFE_1313 NC_011761.1 1140454 1141008 D identified by glimmer; putative; hypothetical protein 1140454..1141008 Acidithiobacillus ferrooxidans ATCC 23270 7136262 YP_002425750.1 CDS AFE_1315 NC_011761.1 1141127 1141258 D identified by glimmer; putative; hypothetical protein 1141127..1141258 Acidithiobacillus ferrooxidans ATCC 23270 7134348 YP_002425751.1 CDS AFE_1314 NC_011761.1 1141227 1141397 R identified by glimmer; putative; hypothetical protein complement(1141227..1141397) Acidithiobacillus ferrooxidans ATCC 23270 7135125 YP_002425752.1 CDS AFE_1316 NC_011761.1 1141345 1141626 D identified by glimmer; putative; hypothetical protein 1141345..1141626 Acidithiobacillus ferrooxidans ATCC 23270 7134320 YP_002425753.1 CDS AFE_1317 NC_011761.1 1141790 1141990 D identified by glimmer; putative; hypothetical protein 1141790..1141990 Acidithiobacillus ferrooxidans ATCC 23270 7134204 YP_002425754.1 CDS AFE_1318 NC_011761.1 1142009 1142212 D identified by similarity to GB:CAE32168.1; hypothetical protein 1142009..1142212 Acidithiobacillus ferrooxidans ATCC 23270 7136342 YP_002425755.1 CDS AFE_1319 NC_011761.1 1142209 1142349 D identified by glimmer; putative; hypothetical protein 1142209..1142349 Acidithiobacillus ferrooxidans ATCC 23270 7136903 YP_002425756.1 CDS AFE_1320 NC_011761.1 1142391 1142939 R identified by glimmer; putative; hypothetical protein complement(1142391..1142939) Acidithiobacillus ferrooxidans ATCC 23270 7137149 YP_002425757.1 CDS AFE_1321 NC_011761.1 1143029 1143364 R identified by similarity to SP:Q8TKM0; match to protein family HMM PF01906; hypothetical protein complement(1143029..1143364) Acidithiobacillus ferrooxidans ATCC 23270 7135348 YP_002425758.1 CDS AFE_1322 NC_011761.1 1143383 1144000 R identified by glimmer; putative; hypothetical protein complement(1143383..1144000) Acidithiobacillus ferrooxidans ATCC 23270 7136496 YP_002425759.1 CDS AFE_1323 NC_011761.1 1144043 1144984 R identified by glimmer; putative; hypothetical protein complement(1144043..1144984) Acidithiobacillus ferrooxidans ATCC 23270 7135972 YP_002425760.1 CDS AFE_1324 NC_011761.1 1145282 1145497 R identified by glimmer; putative; hypothetical protein complement(1145282..1145497) Acidithiobacillus ferrooxidans ATCC 23270 7134106 YP_002425761.1 CDS AFE_1325 NC_011761.1 1145618 1145965 D identified by glimmer; putative; hypothetical protein 1145618..1145965 Acidithiobacillus ferrooxidans ATCC 23270 7134581 YP_002425762.1 CDS AFE_1326 NC_011761.1 1145997 1146689 D identified by similarity to PIR:H85644; match to protein family HMM PF08346; hypothetical protein 1145997..1146689 Acidithiobacillus ferrooxidans ATCC 23270 7135789 YP_002425763.1 CDS AFE_1327 NC_011761.1 1146884 1147639 D identified by similarity to GB:AAP95799.1; hypothetical protein 1146884..1147639 Acidithiobacillus ferrooxidans ATCC 23270 7136680 YP_002425764.1 CDS AFE_1328 NC_011761.1 1147883 1149202 D identified by match to protein family HMM PF07282; match to protein family HMM TIGR01766; transposase, IS605 OrfB family protein 1147883..1149202 Acidithiobacillus ferrooxidans ATCC 23270 7134418 YP_002425765.1 CDS AFE_1329 NC_011761.1 1149174 1149338 D identified by glimmer; putative; hypothetical protein 1149174..1149338 Acidithiobacillus ferrooxidans ATCC 23270 7135113 YP_002425766.1 CDS AFE_1330 NC_011761.1 1149446 1150708 D similar to IST2, transposase; identified by match to protein family HMM PF00872; ISAfe2, transposase 1149446..1150708 Acidithiobacillus ferrooxidans ATCC 23270 7135541 YP_002425767.1 CDS AFE_1331 NC_011761.1 1151144 1151512 D identified by glimmer; putative; hypothetical protein 1151144..1151512 Acidithiobacillus ferrooxidans ATCC 23270 7136813 YP_002425768.1 CDS AFE_1332 NC_011761.1 1151692 1151904 R identified by glimmer; putative; hypothetical protein complement(1151692..1151904) Acidithiobacillus ferrooxidans ATCC 23270 7137049 YP_002425769.1 CDS AFE_1333 NC_011761.1 1151864 1152244 D identified by similarity to GB:BAB60367.1; hypothetical protein 1151864..1152244 Acidithiobacillus ferrooxidans ATCC 23270 7136091 YP_002425770.1 CDS AFE_1334 NC_011761.1 1152287 1152388 R identified by glimmer; putative; hypothetical protein complement(1152287..1152388) Acidithiobacillus ferrooxidans ATCC 23270 7136835 YP_002425771.1 CDS AFE_1335 NC_011761.1 1152651 1152947 D identified by glimmer; putative; hypothetical protein 1152651..1152947 Acidithiobacillus ferrooxidans ATCC 23270 7134271 YP_002425772.1 CDS AFE_1336 NC_011761.1 1152992 1153210 D identified by glimmer; putative; hypothetical protein 1152992..1153210 Acidithiobacillus ferrooxidans ATCC 23270 7135519 YP_002425773.1 CDS AFE_1337 NC_011761.1 1153226 1153321 D identified by glimmer; putative; hypothetical protein 1153226..1153321 Acidithiobacillus ferrooxidans ATCC 23270 7135711 YP_002425774.1 CDS AFE_1338 NC_011761.1 1153377 1154420 D identified by match to protein family HMM PF01569; PAP2 family protein 1153377..1154420 Acidithiobacillus ferrooxidans ATCC 23270 7135786 YP_002425775.1 CDS AFE_1339 NC_011761.1 1154434 1155567 D identified by match to protein family HMM PF02563; polysaccharide biosynthesis/export domain-containing protein 1154434..1155567 Acidithiobacillus ferrooxidans ATCC 23270 7134646 YP_002425776.1 CDS AFE_1340 NC_011761.1 1155636 1158098 D identified by similarity to SP:P38134; match to protein family HMM PF02706; tyrosine-protein kinase 1155636..1158098 Acidithiobacillus ferrooxidans ATCC 23270 7135961 YP_002425777.1 CDS AFE_1341 NC_011761.1 1158095 1158856 D identified by similarity to SP:P39852; protein-tyrosine phosphatase 1158095..1158856 Acidithiobacillus ferrooxidans ATCC 23270 7136461 YP_002425778.1 CDS galE NC_011761.1 1158856 1159854 D identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; match to protein family HMM TIGR01179; UDP-glucose 4-epimerase 1158856..1159854 Acidithiobacillus ferrooxidans ATCC 23270 7134222 YP_002425779.1 CDS AFE_1343 NC_011761.1 1159883 1161205 D identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose 6-dehydrogenase 1159883..1161205 Acidithiobacillus ferrooxidans ATCC 23270 7137152 YP_002425780.1 CDS AFE_1344 NC_011761.1 1161287 1162753 D identified by match to protein family HMM PF01943; polysaccharide biosynthesis protein 1161287..1162753 Acidithiobacillus ferrooxidans ATCC 23270 7134473 YP_002425781.1 CDS AFE_1345 NC_011761.1 1162750 1163445 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein 1162750..1163445 Acidithiobacillus ferrooxidans ATCC 23270 7136654 YP_002425782.1 CDS AFE_1346 NC_011761.1 1163445 1164476 D identified by match to protein family HMM PF00535; glycosyl transferase family protein 1163445..1164476 Acidithiobacillus ferrooxidans ATCC 23270 7136472 YP_002425783.1 CDS AFE_1347 NC_011761.1 1164564 1165481 D identified by glimmer; putative; hypothetical protein 1164564..1165481 Acidithiobacillus ferrooxidans ATCC 23270 7136988 YP_002425784.1 CDS AFE_1348 NC_011761.1 1165585 1166298 D identified by glimmer; putative; hypothetical protein 1165585..1166298 Acidithiobacillus ferrooxidans ATCC 23270 7135778 YP_002425785.1 CDS AFE_1349 NC_011761.1 1166268 1167431 D identified by match to protein family HMM PF00534; glycoside hydrolase 1166268..1167431 Acidithiobacillus ferrooxidans ATCC 23270 7134826 YP_002425786.1 CDS AFE_1350 NC_011761.1 1167428 1168852 D hypothetical protein 1167428..1168852 Acidithiobacillus ferrooxidans ATCC 23270 7135570 YP_002425787.1 CDS AFE_1351 NC_011761.1 1168849 1170021 D identified by match to protein family HMM PF00534; glycoside hydrolase 1168849..1170021 Acidithiobacillus ferrooxidans ATCC 23270 7135431 YP_002425788.1 CDS AFE_1352 NC_011761.1 1170027 1170206 D lipoprotein 1170027..1170206 Acidithiobacillus ferrooxidans ATCC 23270 7134964 YP_002425789.1 CDS asnB NC_011761.1 1170207 1172105 D identified by similarity to SP:P54420; match to protein family HMM PF00310; match to protein family HMM PF00733; match to protein family HMM TIGR01536; asparagine synthase 1170207..1172105 Acidithiobacillus ferrooxidans ATCC 23270 7135503 YP_002425790.1 CDS AFE_1354 NC_011761.1 1172111 1173259 D identified by match to protein family HMM PF00534; glycoside hydrolase 1172111..1173259 Acidithiobacillus ferrooxidans ATCC 23270 7137065 YP_002425791.1 CDS AFE_1355 NC_011761.1 1173252 1174493 D identified by match to protein family HMM PF00534; glycoside hydrolase 1173252..1174493 Acidithiobacillus ferrooxidans ATCC 23270 7134441 YP_002425792.1 CDS AFE_1357 NC_011761.1 1174696 1175847 D identified by match to protein family HMM PF00534; group 1 glycosyl transferase 1174696..1175847 Acidithiobacillus ferrooxidans ATCC 23270 7135907 YP_002425793.1 CDS AFE_1358 NC_011761.1 1175844 1176236 D identified by glimmer; putative; hypothetical protein 1175844..1176236 Acidithiobacillus ferrooxidans ATCC 23270 7134241 YP_002425794.1 CDS AFE_1359 NC_011761.1 1176233 1176637 D identified by match to protein family HMM PF01909; nucleotidyltransferase 1176233..1176637 Acidithiobacillus ferrooxidans ATCC 23270 7135064 YP_002425795.1 CDS AFE_1360 NC_011761.1 1176627 1177067 D identified by similarity to GB:CAE06995.1; match to protein family HMM PF05168; hypothetical protein 1176627..1177067 Acidithiobacillus ferrooxidans ATCC 23270 7135095 YP_002425796.1 CDS AFE_1361 NC_011761.1 1177173 1177466 D identified by similarity to SP:P55510; plasmid stability protein 1177173..1177466 Acidithiobacillus ferrooxidans ATCC 23270 7136462 YP_002425797.1 CDS AFE_1362 NC_011761.1 1177463 1177891 D identified by similarity to SP:P55511; match to protein family HMM PF01850; plasmid stability protein 1177463..1177891 Acidithiobacillus ferrooxidans ATCC 23270 7135145 YP_002425798.1 CDS AFE_1363 NC_011761.1 1178048 1178452 D identified by match to protein family HMM PF01909; nucleotidyltransferase 1178048..1178452 Acidithiobacillus ferrooxidans ATCC 23270 7136913 YP_002425799.1 CDS AFE_1364 NC_011761.1 1178442 1178882 D identified by similarity to GB:CAE06995.1; match to protein family HMM PF05168; hypothetical protein 1178442..1178882 Acidithiobacillus ferrooxidans ATCC 23270 7137001 YP_002425800.1 CDS AFE_1365 NC_011761.1 1179203 1180618 D identified by match to protein family HMM PF01844; HNH endonuclease domain-containing protein 1179203..1180618 Acidithiobacillus ferrooxidans ATCC 23270 7134490 YP_002425801.1 CDS AFE_1366 NC_011761.1 1180676 1182118 D identified by similarity to SP:P29956; match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1180676..1182118 Acidithiobacillus ferrooxidans ATCC 23270 7135777 YP_002425802.1 CDS AFE_1367 NC_011761.1 1182262 1182489 D identified by similarity to PIR:AF2077; match to protein family HMM PF04255; hypothetical protein 1182262..1182489 Acidithiobacillus ferrooxidans ATCC 23270 7134687 YP_002425803.1 CDS AFE_1368 NC_011761.1 1182486 1182839 D identified by similarity to PIR:AG2077; hypothetical protein 1182486..1182839 Acidithiobacillus ferrooxidans ATCC 23270 7134927 YP_002425804.1 CDS AFE_1369 NC_011761.1 1182889 1183668 D identified by match to protein family HMM PF01850; PIN domain-containing protein 1182889..1183668 Acidithiobacillus ferrooxidans ATCC 23270 7136229 YP_002425805.1 CDS AFE_1370 NC_011761.1 1183665 1185119 D identified by similarity to SP:P26406; match to protein family HMM PF02397; match to protein family HMM TIGR03022; match to protein family HMM TIGR03025; undecaprenyl-phosphate galactosephosphotransferase 1183665..1185119 Acidithiobacillus ferrooxidans ATCC 23270 7136963 YP_002425806.1 CDS AFE_1371 NC_011761.1 1185141 1189286 D identified by match to protein family HMM PF00176; match to protein family HMM PF00271; helicase, SNF2/RAD54 family 1185141..1189286 Acidithiobacillus ferrooxidans ATCC 23270 7135823 YP_002425807.1 CDS AFE_1372 NC_011761.1 1189572 1190738 R identified by match to protein family HMM PF02661; fic family protein complement(1189572..1190738) Acidithiobacillus ferrooxidans ATCC 23270 7136325 YP_002425808.1 CDS AFE_1373 NC_011761.1 1191240 1191998 R identified by similarity to SP:P55923; match to protein family HMM PF01695; match to protein family HMM PF08483; transposition helper protein complement(1191240..1191998) Acidithiobacillus ferrooxidans ATCC 23270 7136316 YP_002425809.1 CDS AFE_1375 NC_011761.1 1192897 1193109 D This element disrupts a gene.; transposon, orf1 1192897..1193109 Acidithiobacillus ferrooxidans ATCC 23270 7136305 YP_002425810.1 CDS AFE_1376 NC_011761.1 1193286 1193738 D This element disrupts a gene.; transposon orf2 1193286..1193738 Acidithiobacillus ferrooxidans ATCC 23270 7136664 YP_002425811.1 CDS AFE_1378 NC_011761.1 1194000 1196084 D This element disrupts a gene; identified by match to protein family HMM PF07508; transposon orf3 1194000..1196084 Acidithiobacillus ferrooxidans ATCC 23270 7135247 YP_002425812.1 CDS AFE_1379 NC_011761.1 1196897 1197061 R identified by glimmer; putative; hypothetical protein complement(1196897..1197061) Acidithiobacillus ferrooxidans ATCC 23270 7134413 YP_002425813.1 CDS AFE_1381 NC_011761.1 1196985 1197239 D identified by glimmer; putative; hypothetical protein 1196985..1197239 Acidithiobacillus ferrooxidans ATCC 23270 7135753 YP_002425814.1 CDS AFE_1380 NC_011761.1 1197205 1197501 R identified by glimmer; putative; hypothetical protein complement(1197205..1197501) Acidithiobacillus ferrooxidans ATCC 23270 7135542 YP_002425815.1 CDS AFE_1382 NC_011761.1 1197505 1197720 R identified by glimmer; putative; hypothetical protein complement(1197505..1197720) Acidithiobacillus ferrooxidans ATCC 23270 7135723 YP_002425816.1 CDS AFE_1383 NC_011761.1 1197717 1198025 R identified by similarity to PIR:AF1935; hypothetical protein complement(1197717..1198025) Acidithiobacillus ferrooxidans ATCC 23270 7135403 YP_002425817.1 CDS AFE_1384 NC_011761.1 1198034 1198375 R identified by similarity to GB:AAP44226.1; match to protein family HMM PF05973; hypothetical protein complement(1198034..1198375) Acidithiobacillus ferrooxidans ATCC 23270 7135287 YP_002425818.1 CDS AFE_1386 NC_011761.1 1200024 1200248 D identified by glimmer; putative; hypothetical protein 1200024..1200248 Acidithiobacillus ferrooxidans ATCC 23270 7136842 YP_002425819.1 CDS AFE_1387 NC_011761.1 1200631 1201767 D identified by similarity to PIR:AD2162; match to protein family HMM PF08495; hypothetical protein 1200631..1201767 Acidithiobacillus ferrooxidans ATCC 23270 7135609 YP_002425820.1 CDS cydD NC_011761.1 1201870 1203603 D identified by similarity to SP:P29018; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM TIGR02857; cysteine ABC transporter ATP-binding protein/permease 1201870..1203603 Acidithiobacillus ferrooxidans ATCC 23270 7134425 YP_002425821.1 CDS AFE_1390 NC_011761.1 1203596 1205353 D identified by similarity to SP:P23886; match to protein family HMM PF00005; match to protein family HMM TIGR02868; ABC transporter CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC 1203596..1205353 Acidithiobacillus ferrooxidans ATCC 23270 7134388 YP_002425822.1 CDS AFE_1389 NC_011761.1 1205350 1205697 R identified by glimmer; putative; hypothetical protein complement(1205350..1205697) Acidithiobacillus ferrooxidans ATCC 23270 7135535 YP_002425823.1 CDS ygfZ NC_011761.1 1205701 1206666 R identified by match to protein family HMM PF01571; match to protein family HMM TIGR03317; folate-binding protein YgfZ complement(1205701..1206666) Acidithiobacillus ferrooxidans ATCC 23270 7134723 YP_002425824.1 CDS AFE_1393 NC_011761.1 1206650 1207180 D identified by glimmer; putative; hypothetical protein 1206650..1207180 Acidithiobacillus ferrooxidans ATCC 23270 7134454 YP_002425825.1 CDS nadB NC_011761.1 1207125 1208714 R identified by similarity to SP:P10902; match to protein family HMM PF00890; match to protein family HMM PF01266; match to protein family HMM PF02910; match to protein family HMM PF07992; match to protein family HMM TIGR00551; L-aspartate oxidase complement(1207125..1208714) Acidithiobacillus ferrooxidans ATCC 23270 7135785 YP_002425826.1 CDS rpoE NC_011761.1 1208831 1209457 D identified by similarity to SP:P34086; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; match to protein family HMM TIGR02939; RNA polymerase sigma-E factor 1208831..1209457 Acidithiobacillus ferrooxidans ATCC 23270 7134932 YP_002425827.1 CDS AFE_1395 NC_011761.1 1209454 1210116 D identified by similarity to GB:AAQ59731.1; hypothetical protein 1209454..1210116 Acidithiobacillus ferrooxidans ATCC 23270 7136204 YP_002425828.1 CDS AFE_1396 NC_011761.1 1210286 1211725 D identified by similarity to SP:P09376; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; serine protease, DO/DeqQ family 1210286..1211725 Acidithiobacillus ferrooxidans ATCC 23270 7134259 YP_002425829.1 CDS lepA NC_011761.1 1211831 1213633 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1211831..1213633 Acidithiobacillus ferrooxidans ATCC 23270 7136806 YP_002425830.1 CDS lepB NC_011761.1 1213700 1214491 D identified by similarity to SP:P26844; match to protein family HMM PF00717; match to protein family HMM TIGR02227; signal peptidase I 1213700..1214491 Acidithiobacillus ferrooxidans ATCC 23270 7136752 YP_002425831.1 CDS AFE_1399 NC_011761.1 1214574 1215008 D identified by glimmer; putative; hypothetical protein 1214574..1215008 Acidithiobacillus ferrooxidans ATCC 23270 7136983 YP_002425832.1 CDS rnc NC_011761.1 1215071 1215751 D identified by similarity to SP:P05797; match to protein family HMM PF00035; match to protein family HMM PF00636; match to protein family HMM TIGR02191; ribonuclease III 1215071..1215751 Acidithiobacillus ferrooxidans ATCC 23270 7134433 YP_002425833.1 CDS era NC_011761.1 1215744 1216658 D identified by match to protein family HMM PF01926; match to protein family HMM PF07650; match to protein family HMM TIGR00231; match to protein family HMM TIGR00436; match to protein family HMM TIGR00650; GTP-binding protein Era 1215744..1216658 Acidithiobacillus ferrooxidans ATCC 23270 7135043 YP_002425834.1 CDS AFE_1402 NC_011761.1 1216648 1217415 D identified by match to protein family HMM PF02565; match to protein family HMM TIGR00613; DNA repair protein RecO 1216648..1217415 Acidithiobacillus ferrooxidans ATCC 23270 7137058 YP_002425835.1 CDS pdxJ NC_011761.1 1217412 1218137 D involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase 1217412..1218137 Acidithiobacillus ferrooxidans ATCC 23270 7137170 YP_002425836.1 CDS acpS NC_011761.1 1218134 1218523 D identified by match to protein family HMM PF01648; match to protein family HMM TIGR00516; match to protein family HMM TIGR00556; holo-(acyl-carrier-protein) synthase 1218134..1218523 Acidithiobacillus ferrooxidans ATCC 23270 7134892 YP_002425837.1 CDS AFE_1405 NC_011761.1 1218527 1219849 D identified by similarity to SP:O54068; match to protein family HMM PF00984; match to protein family HMM PF03720; match to protein family HMM PF03721; match to protein family HMM TIGR03026; UDP-glucose 6-dehydrogenase 1218527..1219849 Acidithiobacillus ferrooxidans ATCC 23270 7136205 YP_002425838.1 CDS AFE_1406 NC_011761.1 1219851 1220801 D identified by similarity to GB:AAD49846.1; match to protein family HMM PF00294; match to protein family HMM TIGR02198; kinase, pfkB family 1219851..1220801 Acidithiobacillus ferrooxidans ATCC 23270 7135821 YP_002425839.1 CDS AFE_1407 NC_011761.1 1220791 1221573 D identified by match to protein family HMM PF01171; PP-loop family protein 1220791..1221573 Acidithiobacillus ferrooxidans ATCC 23270 7136624 YP_002425840.1 CDS hslO NC_011761.1 1221566 1222408 D identified by similarity to SP:P45803; match to protein family HMM PF01430; 33 kDa chaperonin 1221566..1222408 Acidithiobacillus ferrooxidans ATCC 23270 7135773 YP_002425841.1 CDS AFE_1412 NC_011761.1 1223126 1223632 R identified by similarity to GB:CAD85910.1; hypothetical protein complement(1223126..1223632) Acidithiobacillus ferrooxidans ATCC 23270 7135869 YP_002425842.1 CDS sohA NC_011761.1 1223629 1223958 R SohA; PrlF; involved in protein secretion; when overproduced or mutated, it induces growth defect and increased export of a reporter protein; a PrlF mutation induces the activity of the Lon protease, and a Lon-deficient strain suppresses the phenotype conferred by the PrlF mutation; regulator PrlF complement(1223629..1223958) Acidithiobacillus ferrooxidans ATCC 23270 7135900 YP_002425843.1 CDS AFE_1414 NC_011761.1 1224098 1224400 R identified by glimmer; putative; hypothetical protein complement(1224098..1224400) Acidithiobacillus ferrooxidans ATCC 23270 7135124 YP_002425844.1 CDS AFE_1415 NC_011761.1 1224415 1224681 R identified by similarity to GB:BAC17067.1; hypothetical protein complement(1224415..1224681) Acidithiobacillus ferrooxidans ATCC 23270 7134351 YP_002425845.1 CDS AFE_1416 NC_011761.1 1224727 1224927 R identified by glimmer; putative; hypothetical protein complement(1224727..1224927) Acidithiobacillus ferrooxidans ATCC 23270 7134453 YP_002425846.1 CDS AFE_1417 NC_011761.1 1225026 1225520 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(1225026..1225520) Acidithiobacillus ferrooxidans ATCC 23270 7134672 YP_002425847.1 CDS AFE_1418 NC_011761.1 1225517 1225789 R identified by match to protein family HMM PF08681; hypothetical protein complement(1225517..1225789) Acidithiobacillus ferrooxidans ATCC 23270 7136219 YP_002425848.1 CDS AFE_1419 NC_011761.1 1225870 1226199 R identified by similarity to GB:CAD14535.1; hypothetical protein complement(1225870..1226199) Acidithiobacillus ferrooxidans ATCC 23270 7135012 YP_002425849.1 CDS AFE_1421 NC_011761.1 1226511 1226786 D identified by glimmer; putative; hypothetical protein 1226511..1226786 Acidithiobacillus ferrooxidans ATCC 23270 7137005 YP_002425850.1 CDS AFE_1422 NC_011761.1 1226866 1227687 R identified by similarity to PIR:F87663; match to protein family HMM PF00149; Ser/Thr protein phosphatase family protein complement(1226866..1227687) Acidithiobacillus ferrooxidans ATCC 23270 7136121 YP_002425851.1 CDS AFE_1423 NC_011761.1 1227847 1228188 R identified by glimmer; putative; hypothetical protein complement(1227847..1228188) Acidithiobacillus ferrooxidans ATCC 23270 7134556 YP_002425852.1 CDS AFE_1424 NC_011761.1 1228243 1228371 D identified by glimmer; putative; hypothetical protein 1228243..1228371 Acidithiobacillus ferrooxidans ATCC 23270 7136092 YP_002425853.1 CDS AFE_1425 NC_011761.1 1228383 1229504 D identified by match to protein family HMM PF00534; glycoside hydrolase 1228383..1229504 Acidithiobacillus ferrooxidans ATCC 23270 7134327 YP_002425854.1 CDS AFE_1427 NC_011761.1 1229538 1230752 D identified by match to protein family HMM PF00534; glycoside hydrolase 1229538..1230752 Acidithiobacillus ferrooxidans ATCC 23270 7134709 YP_002425855.1 CDS AFE_1426 NC_011761.1 1230731 1230991 R identified by glimmer; putative; hypothetical protein complement(1230731..1230991) Acidithiobacillus ferrooxidans ATCC 23270 7135364 YP_002425856.1 CDS AFE_1428 NC_011761.1 1231481 1232929 D identified by similarity to GB:CAA07031.1; cytochrome c 1231481..1232929 Acidithiobacillus ferrooxidans ATCC 23270 7135896 YP_002425857.1 CDS AFE_1429 NC_011761.1 1232944 1233585 D identified by similarity to SP:P74917; cytochrome c552 1232944..1233585 Acidithiobacillus ferrooxidans ATCC 23270 7137002 YP_002425858.1 CDS AFE_1430 NC_011761.1 1233659 1234627 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation diffusion facilitator family transporter complement(1233659..1234627) Acidithiobacillus ferrooxidans ATCC 23270 7136744 YP_002425859.1 CDS AFE_1431 NC_011761.1 1234731 1234967 D identified by match to protein family HMM PF00376; MerR family transcriptional regulator 1234731..1234967 Acidithiobacillus ferrooxidans ATCC 23270 7135912 YP_002425860.1 CDS AFE_1432 NC_011761.1 1234964 1235518 D lipoprotein 1234964..1235518 Acidithiobacillus ferrooxidans ATCC 23270 7134689 YP_002425861.1 CDS rhlE NC_011761.1 1235720 1236976 D identified by similarity to SP:P25888; match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent RNA helicase RhlE 1235720..1236976 Acidithiobacillus ferrooxidans ATCC 23270 7136290 YP_002425862.1 CDS phoB NC_011761.1 1237096 1237827 D identified by similarity to SP:P45605; match to protein family HMM PF00072; match to protein family HMM PF00486; match to protein family HMM TIGR02154; DNA-binding response regulator PhoB 1237096..1237827 Acidithiobacillus ferrooxidans ATCC 23270 7134906 YP_002425863.1 CDS phoR NC_011761.1 1237889 1239217 D identified by similarity to SP:P08400; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM TIGR02966; phosphate regulon sensor protein PhoR 1237889..1239217 Acidithiobacillus ferrooxidans ATCC 23270 7135407 YP_002425864.1 CDS pstS-2 NC_011761.1 1239287 1240306 D identified by similarity to SP:P06128; match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter substrate-binding protein 1239287..1240306 Acidithiobacillus ferrooxidans ATCC 23270 7135725 YP_002425865.1 CDS pstC-2 NC_011761.1 1240363 1241340 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 1240363..1241340 Acidithiobacillus ferrooxidans ATCC 23270 7134202 YP_002425866.1 CDS pstA NC_011761.1 1241337 1242191 D identified by similarity to SP:P07654; match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 1241337..1242191 Acidithiobacillus ferrooxidans ATCC 23270 7134525 YP_002425867.1 CDS pstB NC_011761.1 1242191 1242958 D identified by similarity to SP:P07655; match to protein family HMM PF00005; match to protein family HMM TIGR00972; phosphate ABC transporter ATP-binding protein 1242191..1242958 Acidithiobacillus ferrooxidans ATCC 23270 7136066 YP_002425868.1 CDS phoU NC_011761.1 1242970 1243683 D identified by similarity to SP:P07656; match to protein family HMM PF01895; match to protein family HMM TIGR02135; phosphate transport system protein PhoU 1242970..1243683 Acidithiobacillus ferrooxidans ATCC 23270 7134412 YP_002425869.1 CDS ppx NC_011761.1 1243686 1245197 D identified by similarity to SP:Q9ZN70; match to protein family HMM PF02541; exopolyphosphatase 1243686..1245197 Acidithiobacillus ferrooxidans ATCC 23270 7135587 YP_002425870.1 CDS AFE_1442 NC_011761.1 1245191 1245316 D identified by glimmer; putative; hypothetical protein 1245191..1245316 Acidithiobacillus ferrooxidans ATCC 23270 7135070 YP_002425871.1 CDS AFE_1443 NC_011761.1 1245451 1246041 D identified by similarity to GB:AAP17563.1; DedA family membrane protein 1245451..1246041 Acidithiobacillus ferrooxidans ATCC 23270 7134776 YP_002425872.1 CDS rpsB NC_011761.1 1246246 1246998 D identified by similarity to SP:P02351; match to protein family HMM PF00318; match to protein family HMM TIGR01011; 30S ribosomal protein S2 1246246..1246998 Acidithiobacillus ferrooxidans ATCC 23270 7135144 YP_002425873.1 CDS tsf NC_011761.1 1247026 1247904 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1247026..1247904 Acidithiobacillus ferrooxidans ATCC 23270 7134867 YP_002425874.1 CDS pyrH NC_011761.1 1247905 1248630 D identified by similarity to GB:BAC07813.1; match to protein family HMM PF00696; match to protein family HMM TIGR02075; uridylate kinase 1247905..1248630 Acidithiobacillus ferrooxidans ATCC 23270 7135727 YP_002425875.1 CDS frr NC_011761.1 1248627 1249187 D identified by similarity to SP:P16174; match to protein family HMM PF01765; match to protein family HMM TIGR00496; ribosome recycling factor 1248627..1249187 Acidithiobacillus ferrooxidans ATCC 23270 7135343 YP_002425876.1 CDS uppS NC_011761.1 1249221 1249952 D identified by match to protein family HMM PF01255; match to protein family HMM TIGR00055; undecaprenyl diphosphate synthase 1249221..1249952 Acidithiobacillus ferrooxidans ATCC 23270 7135274 YP_002425877.1 CDS cdsA NC_011761.1 1249934 1250749 D identified by match to protein family HMM PF01148; phosphatidate cytidylyltransferase 1249934..1250749 Acidithiobacillus ferrooxidans ATCC 23270 7134143 YP_002425878.1 CDS dxr NC_011761.1 1250740 1251921 D identified by similarity to SP:P45568; match to protein family HMM PF02670; match to protein family HMM PF08436; match to protein family HMM TIGR00243; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1250740..1251921 Acidithiobacillus ferrooxidans ATCC 23270 7135018 YP_002425879.1 CDS AFE_1451 NC_011761.1 1251937 1253295 D identified by similarity to SP:P37764; match to protein family HMM PF00595; match to protein family HMM PF02163; match to protein family HMM TIGR00054; membrane-associated zinc metalloprotease 1251937..1253295 Acidithiobacillus ferrooxidans ATCC 23270 7135576 YP_002425880.1 CDS AFE_1452 NC_011761.1 1253292 1255637 D identified by match to protein family HMM PF01103; match to protein family HMM PF07244; match to protein family HMM TIGR03303; OMP85 family outer membrane protein 1253292..1255637 Acidithiobacillus ferrooxidans ATCC 23270 7136769 YP_002425881.1 CDS AFE_1453 NC_011761.1 1255655 1256191 D identified by match to protein family HMM PF03938; OmpH family outer membrane protein 1255655..1256191 Acidithiobacillus ferrooxidans ATCC 23270 7135241 YP_002425882.1 CDS lpxD NC_011761.1 1256193 1257254 D identified by similarity to SP:P21645; match to protein family HMM PF00132; match to protein family HMM PF04613; match to protein family HMM TIGR01853; UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase 1256193..1257254 Acidithiobacillus ferrooxidans ATCC 23270 7134888 YP_002425883.1 CDS fabZ NC_011761.1 1257247 1257693 D identified by match to protein family HMM PF07977; match to protein family HMM TIGR01750; beta-hydroxyacyl-(ACP) dehydratase FabZ 1257247..1257693 Acidithiobacillus ferrooxidans ATCC 23270 7135261 YP_002425884.1 CDS lpxA NC_011761.1 1257690 1258472 D identified by similarity to SP:P10440; match to protein family HMM PF00132; match to protein family HMM TIGR01852; acyl-(acyl-carrier-protein)-UDP-N- acetylglucosamine acyltransferase 1257690..1258472 Acidithiobacillus ferrooxidans ATCC 23270 7136387 YP_002425885.1 CDS AFE_1457 NC_011761.1 1258469 1259410 D identified by match to protein family HMM PF01408; match to protein family HMM PF02894; oxidoreductase, NAD-binding 1258469..1259410 Acidithiobacillus ferrooxidans ATCC 23270 7135007 YP_002425886.1 CDS AFE_1458 NC_011761.1 1259456 1260565 D identified by similarity to SP:P15263; match to protein family HMM PF01041; match to protein family HMM PF01212; pleiotropic regulatory protein 1259456..1260565 Acidithiobacillus ferrooxidans ATCC 23270 7136482 YP_002425887.1 CDS lpxB NC_011761.1 1260570 1261697 D identified by similarity to GB:CAA60866.1; match to protein family HMM PF02684; match to protein family HMM TIGR00215; lipid A disaccharide synthase LpxB 1260570..1261697 Acidithiobacillus ferrooxidans ATCC 23270 7136635 YP_002425888.1 CDS rnhB NC_011761.1 1261711 1262301 D identified by similarity to SP:P10442; match to protein family HMM PF01351; ribonuclease HII 1261711..1262301 Acidithiobacillus ferrooxidans ATCC 23270 7134543 YP_002425889.1 CDS dnaE NC_011761.1 1262301 1265801 D identified by similarity to SP:P10443; match to protein family HMM PF01336; match to protein family HMM PF02811; match to protein family HMM PF07733; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha 1262301..1265801 Acidithiobacillus ferrooxidans ATCC 23270 7135551 YP_002425890.1 CDS accA NC_011761.1 1265836 1266786 D identified by match to protein family HMM PF03255; match to protein family HMM TIGR00513; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 1265836..1266786 Acidithiobacillus ferrooxidans ATCC 23270 7134137 YP_002425891.1 CDS tilS NC_011761.1 1266764 1268158 D identified by similarity to SP:P52097; match to protein family HMM PF01171; match to protein family HMM PF01507; match to protein family HMM PF06508; match to protein family HMM PF09179; match to protein family HMM TIGR02432; match to protein family HMM TIGR02433; tRNA(Ile)-lysidine synthetase 1266764..1268158 Acidithiobacillus ferrooxidans ATCC 23270 7135630 YP_002425892.1 CDS pyrC-2 NC_011761.1 1268122 1269453 R Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase complement(1268122..1269453) Acidithiobacillus ferrooxidans ATCC 23270 7137159 YP_002425893.1 CDS dksA NC_011761.1 1269458 1269922 R identified by similarity to SP:P18274; match to protein family HMM PF01258; match to protein family HMM TIGR02420; dnaK suppressor protein complement(1269458..1269922) Acidithiobacillus ferrooxidans ATCC 23270 7134580 YP_002425894.1 CDS AFE_1466 NC_011761.1 1270089 1270853 D identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; HAD-superfamily hydrolase 1270089..1270853 Acidithiobacillus ferrooxidans ATCC 23270 7137062 YP_002425895.1 CDS AFE_1467 NC_011761.1 1270989 1271465 R Fur family transcriptional regulator complement(1270989..1271465) Acidithiobacillus ferrooxidans ATCC 23270 7135370 YP_002425896.1 CDS AFE_1468 NC_011761.1 1271583 1272062 D identified by match to protein family HMM PF00578; match to protein family HMM PF08534; antioxidant, AhpC/Tsa family 1271583..1272062 Acidithiobacillus ferrooxidans ATCC 23270 7135317 YP_002425897.1 CDS AFE_1469 NC_011761.1 1272059 1273468 D identified by match to protein family HMM PF02562; PhoH family protein 1272059..1273468 Acidithiobacillus ferrooxidans ATCC 23270 7135809 YP_002425898.1 CDS speA NC_011761.1 1273533 1275446 D catalyzes the formation of agmatine from arginine in putrescine and spermidine biosynthesis; arginine decarboxylase 1273533..1275446 Acidithiobacillus ferrooxidans ATCC 23270 7136167 YP_002425899.1 CDS AFE_1470 NC_011761.1 1275411 1275839 R identified by glimmer; putative; hypothetical protein complement(1275411..1275839) Acidithiobacillus ferrooxidans ATCC 23270 7135636 YP_002425900.1 CDS AFE_1472 NC_011761.1 1275874 1276557 R identified by match to protein family HMM PF01557; fumarylacetoacetate hydrolase family protein complement(1275874..1276557) Acidithiobacillus ferrooxidans ATCC 23270 7135739 YP_002425901.1 CDS AFE_1473 NC_011761.1 1276554 1276829 R identified by glimmer; putative; hypothetical protein complement(1276554..1276829) Acidithiobacillus ferrooxidans ATCC 23270 7134218 YP_002425902.1 CDS AFE_1474 NC_011761.1 1276826 1277446 R identified by similarity to SP:P39100; match to protein family HMM PF02798; glutathione S-transferase complement(1276826..1277446) Acidithiobacillus ferrooxidans ATCC 23270 7134626 YP_002425903.1 CDS AFE_1475 NC_011761.1 1277446 1277799 R identified by glimmer; putative; hypothetical protein complement(1277446..1277799) Acidithiobacillus ferrooxidans ATCC 23270 7135265 YP_002425904.1 CDS AFE_1476 NC_011761.1 1277816 1278310 R identified by similarity to GB:AAA64729.1; hypothetical protein complement(1277816..1278310) Acidithiobacillus ferrooxidans ATCC 23270 7134872 YP_002425905.1 CDS fixX NC_011761.1 1278329 1278616 R identified by similarity to SP:Q53207; ferredoxin-like protein complement(1278329..1278616) Acidithiobacillus ferrooxidans ATCC 23270 7137116 YP_002425906.1 CDS fixC NC_011761.1 1278613 1279911 R identified by similarity to SP:P10331; match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM PF03486; fixC protein complement(1278613..1279911) Acidithiobacillus ferrooxidans ATCC 23270 7136946 YP_002425907.1 CDS fixB NC_011761.1 1279928 1281022 R identified by similarity to SP:P26483; match to protein family HMM PF00766; match to protein family HMM PF01012; electron transfer flavoprotein subunit alpha complement(1279928..1281022) Acidithiobacillus ferrooxidans ATCC 23270 7134458 YP_002425908.1 CDS fixA NC_011761.1 1281042 1281884 R identified by similarity to SP:P53577; match to protein family HMM PF01012; electron transfer flavoprotein subunit beta complement(1281042..1281884) Acidithiobacillus ferrooxidans ATCC 23270 7134343 YP_002425909.1 CDS AFE_1481 NC_011761.1 1282056 1282154 D identified by glimmer; putative; hypothetical protein 1282056..1282154 Acidithiobacillus ferrooxidans ATCC 23270 7135223 YP_002425910.1 CDS AFE_1482 NC_011761.1 1282389 1283000 D identified by similarity to GB:AAN51174.1; hypothetical protein 1282389..1283000 Acidithiobacillus ferrooxidans ATCC 23270 7134235 YP_002425911.1 CDS AFE_1483 NC_011761.1 1283011 1285275 D identified by match to protein family HMM PF00593; TonB-dependent receptor 1283011..1285275 Acidithiobacillus ferrooxidans ATCC 23270 7135694 YP_002425912.1 CDS AFE_1484 NC_011761.1 1285369 1286565 D identified by similarity to GB:AAM72768.1; hypothetical protein 1285369..1286565 Acidithiobacillus ferrooxidans ATCC 23270 7135379 YP_002425913.1 CDS AFE_1485 NC_011761.1 1286578 1287231 D identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 1286578..1287231 Acidithiobacillus ferrooxidans ATCC 23270 7135891 YP_002425914.1 CDS AFE_1486 NC_011761.1 1287233 1287628 D identified by match to protein family HMM PF02472; ExbD/TolR family biopolymer transport protein 1287233..1287628 Acidithiobacillus ferrooxidans ATCC 23270 7135768 YP_002425915.1 CDS AFE_1487 NC_011761.1 1287625 1288359 D identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB family protein 1287625..1288359 Acidithiobacillus ferrooxidans ATCC 23270 7135189 YP_002425916.1 CDS AFE_1488 NC_011761.1 1288372 1288551 D identified by glimmer; putative; hypothetical protein 1288372..1288551 Acidithiobacillus ferrooxidans ATCC 23270 7135696 YP_002425917.1 CDS AFE_1489 NC_011761.1 1288563 1289594 D identified by match to protein family HMM PF01497; iron compound ABC transporter periplasmic iron-binding protein 1288563..1289594 Acidithiobacillus ferrooxidans ATCC 23270 7134612 YP_002425918.1 CDS AFE_1490 NC_011761.1 1289591 1290574 D identified by match to protein family HMM PF01032; ABC transporter permease, FecCD family 1289591..1290574 Acidithiobacillus ferrooxidans ATCC 23270 7135055 YP_002425919.1 CDS AFE_1491 NC_011761.1 1290571 1291362 D identified by similarity to SP:P15031; match to protein family HMM PF00005; iron compound ABC transporter ATP-binding protein 1290571..1291362 Acidithiobacillus ferrooxidans ATCC 23270 7135589 YP_002425920.1 CDS AFE_1492 NC_011761.1 1291388 1293523 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 1291388..1293523 Acidithiobacillus ferrooxidans ATCC 23270 7134068 YP_002425921.1 CDS AFE_1493 NC_011761.1 1293551 1294270 D identified by match to protein family HMM PF01547; match to protein family HMM TIGR01256; molybdenum ABC transporter periplasmic molybdate-binding protein 1293551..1294270 Acidithiobacillus ferrooxidans ATCC 23270 7135683 YP_002425922.1 CDS AFE_1494 NC_011761.1 1294290 1295324 D identified by match to protein family HMM PF01497; iron compound ABC transporter periplasmic iron-binding protein 1294290..1295324 Acidithiobacillus ferrooxidans ATCC 23270 7136434 YP_002425923.1 CDS AFE_1495 NC_011761.1 1295321 1296346 D identified by match to protein family HMM PF01032; ABC transporter permease, FecCD family 1295321..1296346 Acidithiobacillus ferrooxidans ATCC 23270 7134821 YP_002425924.1 CDS AFE_1496 NC_011761.1 1296408 1297610 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation diffusion facilitator family transporter complement(1296408..1297610) Acidithiobacillus ferrooxidans ATCC 23270 7135666 YP_002425925.1 CDS AFE_1497 NC_011761.1 1297694 1299022 R identified by match to protein family HMM PF03573; hypothetical protein complement(1297694..1299022) Acidithiobacillus ferrooxidans ATCC 23270 7136993 YP_002425926.1 CDS AFE_1498 NC_011761.1 1299188 1300111 R identified by match to protein family HMM PF01547; ABC transporter substrate-binding protein complement(1299188..1300111) Acidithiobacillus ferrooxidans ATCC 23270 7134829 YP_002425927.1 CDS AFE_1499 NC_011761.1 1300356 1302017 D identified by match to protein family HMM PF00004; AAA ATPase 1300356..1302017 Acidithiobacillus ferrooxidans ATCC 23270 7134714 YP_002425928.1 CDS AFE_1500 NC_011761.1 1302060 1302374 D identified by glimmer; putative; hypothetical protein 1302060..1302374 Acidithiobacillus ferrooxidans ATCC 23270 7136805 YP_002425929.1 CDS AFE_1501 NC_011761.1 1302512 1302742 R identified by similarity to GB:AAN66836.1; match to protein family HMM TIGR02605; hypothetical protein complement(1302512..1302742) Acidithiobacillus ferrooxidans ATCC 23270 7135425 YP_002425930.1 CDS AFE_1502 NC_011761.1 1302812 1303594 R identified by match to protein family HMM PF00023; match to protein family HMM PF00581; ankyrin repeat domain-containing protein complement(1302812..1303594) Acidithiobacillus ferrooxidans ATCC 23270 7136234 YP_002425931.1 CDS AFE_1503 NC_011761.1 1303591 1305207 R nitroreductase complement(1303591..1305207) Acidithiobacillus ferrooxidans ATCC 23270 7136183 YP_002425932.1 CDS AFE_1504 NC_011761.1 1305272 1305604 R identified by similarity to SP:P26481; match to protein family HMM PF03206; nifW protein complement(1305272..1305604) Acidithiobacillus ferrooxidans ATCC 23270 7134197 YP_002425933.1 CDS cysE-1 NC_011761.1 1305640 1306416 R identified by similarity to SP:Q06750; match to protein family HMM PF00132; match to protein family HMM TIGR01172; serine O-acetyltransferase complement(1305640..1306416) Acidithiobacillus ferrooxidans ATCC 23270 7136242 YP_002425934.1 CDS nifV NC_011761.1 1306432 1307592 R identified by similarity to SP:Q44290; match to protein family HMM PF00682; match to protein family HMM TIGR02660; homocitrate synthase complement(1306432..1307592) Acidithiobacillus ferrooxidans ATCC 23270 7135353 YP_002425935.1 CDS iscS-2 NC_011761.1 1307585 1308793 R identified by similarity to SP:O54055; match to protein family HMM PF00266; match to protein family HMM PF01212; match to protein family HMM TIGR03402; cysteine desulfurase complement(1307585..1308793) Acidithiobacillus ferrooxidans ATCC 23270 7136042 YP_002425936.1 CDS AFE_1508 NC_011761.1 1308796 1309671 R identified by similarity to SP:P05340; match to protein family HMM PF01106; match to protein family HMM PF01592; match to protein family HMM PF04324; match to protein family HMM TIGR02000; nitrogen fixation protein nifU complement(1308796..1309671) Acidithiobacillus ferrooxidans ATCC 23270 7136700 YP_002425937.1 CDS AFE_1509 NC_011761.1 1309676 1310044 R identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; iron-sulfur cluster assembly accessory protein complement(1309676..1310044) Acidithiobacillus ferrooxidans ATCC 23270 7135253 YP_002425938.1 CDS AFE_1510 NC_011761.1 1310302 1310895 R identified by similarity to GB:AAB66329.1; hypothetical protein complement(1310302..1310895) Acidithiobacillus ferrooxidans ATCC 23270 7136651 YP_002425939.1 CDS AFE_1511 NC_011761.1 1310962 1311615 R identified by match to protein family HMM PF04891; nitrogen fixation protein NifQ complement(1310962..1311615) Acidithiobacillus ferrooxidans ATCC 23270 7136483 YP_002425940.1 CDS AFE_1512 NC_011761.1 1311637 1311945 R identified by similarity to SP:P46036; match to protein family HMM PF00037; match to protein family HMM TIGR02936; ferredoxin complement(1311637..1311945) Acidithiobacillus ferrooxidans ATCC 23270 7135543 YP_002425941.1 CDS AFE_1513 NC_011761.1 1311950 1312213 R identified by similarity to GB:AAK51500.1; match to protein family HMM PF05082; hypothetical protein complement(1311950..1312213) Acidithiobacillus ferrooxidans ATCC 23270 7134527 YP_002425942.1 CDS AFE_1514 NC_011761.1 1312271 1312738 R identified by similarity to GB:BAC47013.1; match to protein family HMM PF03270; match to protein family HMM TIGR02935; hypothetical protein complement(1312271..1312738) Acidithiobacillus ferrooxidans ATCC 23270 7137038 YP_002425943.1 CDS nifX NC_011761.1 1312731 1313147 R identified by similarity to SP:P19078; match to protein family HMM PF02579; match to protein family HMM TIGR02663; nitrogen fixation protein NifX complement(1312731..1313147) Acidithiobacillus ferrooxidans ATCC 23270 7134058 YP_002425944.1 CDS nifN NC_011761.1 1313200 1314561 R functions with NifE to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifN complement(1313200..1314561) Acidithiobacillus ferrooxidans ATCC 23270 7134389 YP_002425945.1 CDS nifE NC_011761.1 1314558 1315949 R functions with NifN to assemble FeMo cofactor; functions in assembly of nitrogenase MoFe; nitrogenase molybdenum-cofactor biosynthesis protein NifE complement(1314558..1315949) Acidithiobacillus ferrooxidans ATCC 23270 7136414 YP_002425946.1 CDS AFE_1518 NC_011761.1 1315968 1316312 R identified by match to protein family HMM PF00111; ferredoxin complement(1315968..1316312) Acidithiobacillus ferrooxidans ATCC 23270 7135424 YP_002425947.1 CDS AFE_1519 NC_011761.1 1316337 1316681 R identified by similarity to SP:P37097; match to protein family HMM PF00111; ferredoxin complement(1316337..1316681) Acidithiobacillus ferrooxidans ATCC 23270 7135471 YP_002425948.1 CDS nifK NC_011761.1 1316743 1318302 R identified by match to protein family HMM PF00148; match to protein family HMM TIGR01286; nitrogenase molybdenum-iron protein subunit beta complement(1316743..1318302) Acidithiobacillus ferrooxidans ATCC 23270 7136118 YP_002425949.1 CDS nifD NC_011761.1 1318381 1319856 R identified by similarity to SP:P06121; match to protein family HMM PF00148; match to protein family HMM TIGR01282; match to protein family HMM TIGR01862; nitrogenase molybdenum-iron protein subunit alpha complement(1318381..1319856) Acidithiobacillus ferrooxidans ATCC 23270 7134200 YP_002425950.1 CDS nifH NC_011761.1 1319920 1320810 R nitrogenase iron protein; nitrogenase component 2; with component 1, an molybdenum-iron protein, catalyzes the fixation of nitrogen to ammonia; nitrogen reductase provides electrons to the nitrogenase complex; in R. etli there are three essentially identical copies of nifH which are actively expressed during symbiosis; nitrogenase reductase complement(1319920..1320810) Acidithiobacillus ferrooxidans ATCC 23270 7137267 YP_002425951.1 CDS AFE_1523 NC_011761.1 1321269 1321655 D response regulator 1321269..1321655 Acidithiobacillus ferrooxidans ATCC 23270 7134665 YP_002425952.1 CDS draT NC_011761.1 1321674 1322501 D identified by similarity to SP:P14299; NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase 1321674..1322501 Acidithiobacillus ferrooxidans ATCC 23270 7136465 YP_002425953.1 CDS draG NC_011761.1 1322511 1323899 D identified by match to protein family HMM PF03747; match to protein family HMM TIGR01616; match to protein family HMM TIGR02662; ADP-ribosyl-[dinitrogen reductase] hydrolase 1322511..1323899 Acidithiobacillus ferrooxidans ATCC 23270 7137172 YP_002425954.1 CDS nifA NC_011761.1 1323925 1325562 D identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR01817; Nif-specific regulatory protein 1323925..1325562 Acidithiobacillus ferrooxidans ATCC 23270 7135963 YP_002425955.1 CDS AFE_1526 NC_011761.1 1325559 1325702 R identified by glimmer; putative; hypothetical protein complement(1325559..1325702) Acidithiobacillus ferrooxidans ATCC 23270 7135922 YP_002425956.1 CDS AFE_1528 NC_011761.1 1325832 1325933 D identified by glimmer; putative; hypothetical protein 1325832..1325933 Acidithiobacillus ferrooxidans ATCC 23270 7134157 YP_002425957.1 CDS nifB NC_011761.1 1325956 1327455 D identified by match to protein family HMM PF02579; match to protein family HMM PF04055; match to protein family HMM TIGR01290; nitrogenase cofactor biosynthesis protein NifB 1325956..1327455 Acidithiobacillus ferrooxidans ATCC 23270 7135629 YP_002425958.1 CDS AFE_1530 NC_011761.1 1327506 1327724 D identified by similarity to SP:P00207; match to protein family HMM PF00037; ferredoxin 1327506..1327724 Acidithiobacillus ferrooxidans ATCC 23270 7136383 YP_002425959.1 CDS AFE_1531 NC_011761.1 1327734 1328069 D identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; iron-sulfur cluster assembly accessory protein 1327734..1328069 Acidithiobacillus ferrooxidans ATCC 23270 7134044 YP_002425960.1 CDS AFE_1532 NC_011761.1 1328110 1328340 D identified by glimmer; putative; hypothetical protein 1328110..1328340 Acidithiobacillus ferrooxidans ATCC 23270 7134864 YP_002425961.1 CDS AFE_1533 NC_011761.1 1328337 1328846 D identified by similarity to SP:P23177; hypothetical protein 1328337..1328846 Acidithiobacillus ferrooxidans ATCC 23270 7135209 YP_002425962.1 CDS AFE_1534 NC_011761.1 1328839 1329630 D identified by match to protein family HMM PF01816; leucine rich repeat protein 1328839..1329630 Acidithiobacillus ferrooxidans ATCC 23270 7136054 YP_002425963.1 CDS AFE_1535 NC_011761.1 1329627 1329920 D identified by match to protein family HMM PF04319; NifZ domain-containing protein 1329627..1329920 Acidithiobacillus ferrooxidans ATCC 23270 7134516 YP_002425964.1 CDS AFE_1536 NC_011761.1 1329920 1330171 D NifZ domain-containing protein 1329920..1330171 Acidithiobacillus ferrooxidans ATCC 23270 7137134 YP_002425965.1 CDS iscS-1 NC_011761.1 1330168 1331349 D identified by similarity to SP:O54055; match to protein family HMM PF00266; cysteine desulfurase 1330168..1331349 Acidithiobacillus ferrooxidans ATCC 23270 7136249 YP_002425966.1 CDS AFE_1538 NC_011761.1 1331365 1331574 D identified by similarity to SP:P09427; match to protein family HMM PF06988; match to protein family HMM TIGR02934; nitrogen fixation protein 1331365..1331574 Acidithiobacillus ferrooxidans ATCC 23270 7134711 YP_002425967.1 CDS AFE_1539 NC_011761.1 1331579 1331851 D identified by similarity to GB:AAA64714.1; hypothetical protein 1331579..1331851 Acidithiobacillus ferrooxidans ATCC 23270 7134065 YP_002425968.1 CDS AFE_1540 NC_011761.1 1331848 1332990 D identified by match to protein family HMM PF01041; DegT/DnrJ/EryC1/StrS family aminotransferase 1331848..1332990 Acidithiobacillus ferrooxidans ATCC 23270 7136365 YP_002425969.1 CDS AFE_1541 NC_011761.1 1333032 1333337 D identified by similarity to SP:P44428; match to protein family HMM PF00111; ferredoxin 1333032..1333337 Acidithiobacillus ferrooxidans ATCC 23270 7135163 YP_002425970.1 CDS AFE_1542 NC_011761.1 1333348 1333572 D identified by glimmer; putative; hypothetical protein 1333348..1333572 Acidithiobacillus ferrooxidans ATCC 23270 7135775 YP_002425971.1 CDS AFE_1543 NC_011761.1 1333585 1334412 D identified by similarity to GB:AAF61911.1; hypothetical protein 1333585..1334412 Acidithiobacillus ferrooxidans ATCC 23270 7135376 YP_002425972.1 CDS AFE_1544 NC_011761.1 1334461 1335315 R identified by similarity to SP:P59245; match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR01334; pyrophosphorylase complement(1334461..1335315) Acidithiobacillus ferrooxidans ATCC 23270 7137211 YP_002425973.1 CDS AFE_1545 NC_011761.1 1335439 1335645 R identified by match to protein family HMM PF03459; match to protein family HMM TIGR00638; molybdenum-pterin-binding protein complement(1335439..1335645) Acidithiobacillus ferrooxidans ATCC 23270 7136901 YP_002425974.1 CDS AFE_1546 NC_011761.1 1335712 1337139 R identified by similarity to SP:P25526; match to protein family HMM PF00171; succinate-semialdehyde dehydrogenase complement(1335712..1337139) Acidithiobacillus ferrooxidans ATCC 23270 7137033 YP_002425975.1 CDS AFE_1548 NC_011761.1 1337338 1337730 D identified by similarity to SP:Q9CC59; match to protein family HMM PF01152; heme-binding protein 1337338..1337730 Acidithiobacillus ferrooxidans ATCC 23270 7135631 YP_002425976.1 CDS AFE_1547 NC_011761.1 1337727 1339145 R identified by match to protein family HMM PF07690; hypothetical protein complement(1337727..1339145) Acidithiobacillus ferrooxidans ATCC 23270 7137091 YP_002425977.1 CDS AFE_1549 NC_011761.1 1339329 1339901 D identified by similarity to GB:AAM36227.1; hypothetical protein 1339329..1339901 Acidithiobacillus ferrooxidans ATCC 23270 7135129 YP_002425978.1 CDS AFE_1550 NC_011761.1 1339898 1340809 D identified by match to protein family HMM PF00294; carbohydrate kinase, PfkB family 1339898..1340809 Acidithiobacillus ferrooxidans ATCC 23270 7135749 YP_002425979.1 CDS AFE_1551 NC_011761.1 1340802 1342946 D identified by match to protein family HMM PF00534; match to protein family HMM PF05116; match to protein family HMM PF08282; match to protein family HMM TIGR01484; match to protein family HMM TIGR02471; match to protein family HMM TIGR02472; sucrose phosphate synthase 1340802..1342946 Acidithiobacillus ferrooxidans ATCC 23270 7135945 YP_002425980.1 CDS AFE_1552 NC_011761.1 1342876 1345320 D identified by match to protein family HMM PF00534; match to protein family HMM PF00862; sucrose synthase 1342876..1345320 Acidithiobacillus ferrooxidans ATCC 23270 7136571 YP_002425981.1 CDS ogt-2 NC_011761.1 1345465 1345989 R identified by similarity to SP:P09168; match to protein family HMM PF01035; match to protein family HMM PF02870; match to protein family HMM TIGR00589; methylated-DNA--protein-cysteine methyltransferase complement(1345465..1345989) Acidithiobacillus ferrooxidans ATCC 23270 7134756 YP_002425982.1 CDS AFE_1554 NC_011761.1 1346142 1346795 R identified by match to protein family HMM PF02656; hypothetical protein complement(1346142..1346795) Acidithiobacillus ferrooxidans ATCC 23270 7136132 YP_002425983.1 CDS AFE_1556 NC_011761.1 1347049 1348044 R identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family complement(1347049..1348044) Acidithiobacillus ferrooxidans ATCC 23270 7135830 YP_002425984.1 CDS AFE_1558 NC_011761.1 1348464 1348751 D identified by glimmer; putative; hypothetical protein 1348464..1348751 Acidithiobacillus ferrooxidans ATCC 23270 7135138 YP_002425985.1 CDS AFE_1557 NC_011761.1 1348643 1348876 R identified by similarity to GB:CAD29689.1; hypothetical protein complement(1348643..1348876) Acidithiobacillus ferrooxidans ATCC 23270 7136811 YP_002425986.1 CDS AFE_1559 NC_011761.1 1349087 1349365 D identified by glimmer; putative; hypothetical protein 1349087..1349365 Acidithiobacillus ferrooxidans ATCC 23270 7134497 YP_002425987.1 CDS AFE_1560 NC_011761.1 1349368 1349706 D identified by similarity to SP:Q9CLT7; hypothetical protein 1349368..1349706 Acidithiobacillus ferrooxidans ATCC 23270 7134115 YP_002425988.1 CDS AFE_1561 NC_011761.1 1349838 1350692 R identified by glimmer; putative; hypothetical protein complement(1349838..1350692) Acidithiobacillus ferrooxidans ATCC 23270 7135445 YP_002425989.1 CDS AFE_1562 NC_011761.1 1350694 1351416 R identified by glimmer; putative; hypothetical protein complement(1350694..1351416) Acidithiobacillus ferrooxidans ATCC 23270 7134682 YP_002425990.1 CDS AFE_1563 NC_011761.1 1351413 1351907 R repressor protein CI complement(1351413..1351907) Acidithiobacillus ferrooxidans ATCC 23270 7136111 YP_002425991.1 CDS AFE_1564 NC_011761.1 1351989 1352213 D Cro family transcriptional regulator 1351989..1352213 Acidithiobacillus ferrooxidans ATCC 23270 7137045 YP_002425992.1 CDS AFE_1565 NC_011761.1 1352265 1353326 D identified by glimmer; putative; hypothetical protein 1352265..1353326 Acidithiobacillus ferrooxidans ATCC 23270 7135308 YP_002425993.1 CDS AFE_1566 NC_011761.1 1353337 1354197 D identified by similarity to SP:P07905; match to protein family HMM PF01695; DNA replication protein DnaC 1353337..1354197 Acidithiobacillus ferrooxidans ATCC 23270 7136532 YP_002425994.1 CDS AFE_1567 NC_011761.1 1354194 1355390 D identified by glimmer; putative; hypothetical protein 1354194..1355390 Acidithiobacillus ferrooxidans ATCC 23270 7135019 YP_002425995.1 CDS AFE_1568 NC_011761.1 1355387 1356277 D identified by match to protein family HMM PF02086; methyltransferase 1355387..1356277 Acidithiobacillus ferrooxidans ATCC 23270 7134056 YP_002425996.1 CDS ssb-2 NC_011761.1 1356340 1356834 D identified by match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein 1356340..1356834 Acidithiobacillus ferrooxidans ATCC 23270 7134144 YP_002425997.1 CDS AFE_1570 NC_011761.1 1356990 1357133 D identified by glimmer; putative; hypothetical protein 1356990..1357133 Acidithiobacillus ferrooxidans ATCC 23270 7137096 YP_002425998.1 CDS AFE_1571 NC_011761.1 1357636 1357788 D identified by glimmer; putative; hypothetical protein 1357636..1357788 Acidithiobacillus ferrooxidans ATCC 23270 7136044 YP_002425999.1 CDS AFE_1572 NC_011761.1 1357799 1364395 D identified by similarity to GB:AAM41383.1; hypothetical protein 1357799..1364395 Acidithiobacillus ferrooxidans ATCC 23270 7134817 YP_002426000.1 CDS AFE_1573 NC_011761.1 1364395 1364712 D identified by glimmer; putative; hypothetical protein 1364395..1364712 Acidithiobacillus ferrooxidans ATCC 23270 7134321 YP_002426001.1 CDS AFE_1574 NC_011761.1 1364998 1365981 R identified by glimmer; putative; hypothetical protein complement(1364998..1365981) Acidithiobacillus ferrooxidans ATCC 23270 7136579 YP_002426002.1 CDS AFE_1575 NC_011761.1 1366160 1368442 R identified by similarity to SP:P08956; match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM PF08463; type I restriction-modification system, R subunit complement(1366160..1368442) Acidithiobacillus ferrooxidans ATCC 23270 7135167 YP_002426003.1 CDS AFE_1576 NC_011761.1 1368452 1369651 R identified by match to protein family HMM PF01420; type I restriction-modification system subunit S complement(1368452..1369651) Acidithiobacillus ferrooxidans ATCC 23270 7134578 YP_002426004.1 CDS AFE_1577 NC_011761.1 1369648 1371102 R identified by match to protein family HMM PF02384; type I restriction-modification system, M subunit complement(1369648..1371102) Acidithiobacillus ferrooxidans ATCC 23270 7135296 YP_002426005.1 CDS AFE_1578 NC_011761.1 1371201 1371575 R identified by match to protein family HMM PF01850; PIN domain-containing protein complement(1371201..1371575) Acidithiobacillus ferrooxidans ATCC 23270 7136872 YP_002426006.1 CDS AFE_1579 NC_011761.1 1371572 1371769 R identified by similarity to GB:AAK52344.1; hypothetical protein complement(1371572..1371769) Acidithiobacillus ferrooxidans ATCC 23270 7136481 YP_002426007.1 CDS AFE_1581 NC_011761.1 1371912 1372154 D identified by glimmer; putative; hypothetical protein 1371912..1372154 Acidithiobacillus ferrooxidans ATCC 23270 7135797 YP_002426008.1 CDS AFE_1580 NC_011761.1 1372085 1372264 R identified by glimmer; putative; hypothetical protein complement(1372085..1372264) Acidithiobacillus ferrooxidans ATCC 23270 7135453 YP_002426009.1 CDS AFE_1582 NC_011761.1 1372599 1373273 D identified by glimmer; putative; hypothetical protein 1372599..1373273 Acidithiobacillus ferrooxidans ATCC 23270 7135316 YP_002426010.1 CDS AFE_1583 NC_011761.1 1373270 1373593 D identified by similarity to SP:P23302; match to protein family HMM PF00216; integration host factor subunit alpha 1373270..1373593 Acidithiobacillus ferrooxidans ATCC 23270 7135735 YP_002426011.1 CDS AFE_1584 NC_011761.1 1373660 1373935 D identified by match to protein family HMM PF00216; DNA-binding protein HU family protein 1373660..1373935 Acidithiobacillus ferrooxidans ATCC 23270 7134857 YP_002426012.1 CDS AFE_1585 NC_011761.1 1373947 1374300 D identified by glimmer; putative; hypothetical protein 1373947..1374300 Acidithiobacillus ferrooxidans ATCC 23270 7135808 YP_002426013.1 CDS AFE_1586 NC_011761.1 1374309 1374530 D identified by match to protein family HMM PF00216; HU family DNA-binding protein 1374309..1374530 Acidithiobacillus ferrooxidans ATCC 23270 7137235 YP_002426014.1 CDS AFE_1587 NC_011761.1 1374531 1374755 D identified by glimmer; putative; hypothetical protein 1374531..1374755 Acidithiobacillus ferrooxidans ATCC 23270 7135411 YP_002426015.1 CDS AFE_1588 NC_011761.1 1374953 1375084 D identified by glimmer; putative; hypothetical protein 1374953..1375084 Acidithiobacillus ferrooxidans ATCC 23270 7134955 YP_002426016.1 CDS dinJ NC_011761.1 1375254 1375523 R identified by similarity to SP:Q47150; match to protein family HMM PF04221; match to protein family HMM TIGR02384; DNA-damage-inducible protein J complement(1375254..1375523) Acidithiobacillus ferrooxidans ATCC 23270 7136754 YP_002426017.1 CDS AFE_1590 NC_011761.1 1375548 1376444 R identified by similarity to GB:AAO08903.1; hypothetical protein complement(1375548..1376444) Acidithiobacillus ferrooxidans ATCC 23270 7135550 YP_002426018.1 CDS AFE_1591 NC_011761.1 1376706 1377266 D identified by similarity to PIR:AG0097; hypothetical protein 1376706..1377266 Acidithiobacillus ferrooxidans ATCC 23270 7135264 YP_002426019.1 CDS AFE_1594 NC_011761.1 1378104 1378259 D identified by glimmer; putative; hypothetical protein 1378104..1378259 Acidithiobacillus ferrooxidans ATCC 23270 7135767 YP_002426020.1 CDS AFE_1595 NC_011761.1 1378759 1379517 R identified by glimmer; putative; hypothetical protein complement(1378759..1379517) Acidithiobacillus ferrooxidans ATCC 23270 7135394 YP_002426021.1 CDS AFE_1596 NC_011761.1 1379771 1379998 R identified by glimmer; putative; hypothetical protein complement(1379771..1379998) Acidithiobacillus ferrooxidans ATCC 23270 7136337 YP_002426022.1 CDS AFE_1597 NC_011761.1 1379947 1380189 R transposase, degenerate complement(1379947..1380189) Acidithiobacillus ferrooxidans ATCC 23270 7134492 YP_002426023.1 CDS AFE_1598 NC_011761.1 1380283 1380450 R identified by glimmer; putative; hypothetical protein complement(1380283..1380450) Acidithiobacillus ferrooxidans ATCC 23270 7136078 YP_002426024.1 CDS AFE_1599 NC_011761.1 1380644 1380739 R identified by glimmer; putative; hypothetical protein complement(1380644..1380739) Acidithiobacillus ferrooxidans ATCC 23270 7136976 YP_002426025.1 CDS AFE_1600 NC_011761.1 1380895 1381092 R identified by glimmer; putative; hypothetical protein complement(1380895..1381092) Acidithiobacillus ferrooxidans ATCC 23270 7136193 YP_002426026.1 CDS AFE_1601 NC_011761.1 1381329 1381520 R identified by glimmer; putative; hypothetical protein complement(1381329..1381520) Acidithiobacillus ferrooxidans ATCC 23270 7136981 YP_002426027.1 CDS AFE_1603 NC_011761.1 1382087 1383223 R identified by similarity to SP:P75774; match to protein family HMM PF01061; ABC transporter permease complement(1382087..1383223) Acidithiobacillus ferrooxidans ATCC 23270 7136803 YP_002426028.1 CDS AFE_1604 NC_011761.1 1383227 1384360 R identified by similarity to SP:P75775; match to protein family HMM PF01061; ABC transporter permease complement(1383227..1384360) Acidithiobacillus ferrooxidans ATCC 23270 7135575 YP_002426029.1 CDS AFE_1605 NC_011761.1 1384357 1385286 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1384357..1385286) Acidithiobacillus ferrooxidans ATCC 23270 7134856 YP_002426030.1 CDS AFE_1606 NC_011761.1 1385300 1386247 R identified by similarity to SP:P75776; match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1385300..1386247) Acidithiobacillus ferrooxidans ATCC 23270 7136135 YP_002426031.1 CDS AFE_1607 NC_011761.1 1386247 1387242 R identified by match to protein family HMM PF00529; secretion protein, HlyD family complement(1386247..1387242) Acidithiobacillus ferrooxidans ATCC 23270 7134507 YP_002426032.1 CDS AFE_1609 NC_011761.1 1387656 1387853 D identified by glimmer; putative; hypothetical protein 1387656..1387853 Acidithiobacillus ferrooxidans ATCC 23270 7135952 YP_002426033.1 CDS AFE_1610 NC_011761.1 1388762 1389091 R identified by match to protein family HMM PF01527; ISAfe7, transposase orfA complement(1388762..1389091) Acidithiobacillus ferrooxidans ATCC 23270 7136910 YP_002426034.1 CDS AFE_1611 NC_011761.1 1389142 1390152 R identified by match to protein family HMM PF01609; match to protein family HMM PF02178; transposase complement(1389142..1390152) Acidithiobacillus ferrooxidans ATCC 23270 7136552 YP_002426035.1 CDS AFE_1612 NC_011761.1 1390245 1390361 R identified by glimmer; putative; hypothetical protein complement(1390245..1390361) Acidithiobacillus ferrooxidans ATCC 23270 7136256 YP_002426036.1 CDS AFE_1613 NC_011761.1 1390753 1391325 R identified by similarity to GB:AAN62151.1; hypothetical protein complement(1390753..1391325) Acidithiobacillus ferrooxidans ATCC 23270 7136703 YP_002426037.1 CDS AFE_1614 NC_011761.1 1391326 1391790 R identified by match to protein family HMM PF00376; match to protein family HMM TIGR01764; excisionase domain-containing protein complement(1391326..1391790) Acidithiobacillus ferrooxidans ATCC 23270 7136848 YP_002426038.1 CDS AFE_1615 NC_011761.1 1392226 1396575 D identified by similarity to SP:P27189; match to protein family HMM PF08401; DNA primase TraC 1392226..1396575 Acidithiobacillus ferrooxidans ATCC 23270 7136491 YP_002426039.1 CDS AFE_1616 NC_011761.1 1396634 1397830 D identified by glimmer; putative; hypothetical protein 1396634..1397830 Acidithiobacillus ferrooxidans ATCC 23270 7135341 YP_002426040.1 CDS AFE_1617 NC_011761.1 1397827 1398105 D identified by glimmer; putative; hypothetical protein 1397827..1398105 Acidithiobacillus ferrooxidans ATCC 23270 7134973 YP_002426041.1 CDS AFE_1618 NC_011761.1 1398116 1398505 D identified by glimmer; putative; hypothetical protein 1398116..1398505 Acidithiobacillus ferrooxidans ATCC 23270 7136423 YP_002426042.1 CDS AFE_1619 NC_011761.1 1398528 1399487 D identified by glimmer; putative; hypothetical protein 1398528..1399487 Acidithiobacillus ferrooxidans ATCC 23270 7134090 YP_002426043.1 CDS AFE_1620 NC_011761.1 1399551 1400330 D identified by glimmer; putative; hypothetical protein 1399551..1400330 Acidithiobacillus ferrooxidans ATCC 23270 7134584 YP_002426044.1 CDS AFE_1621 NC_011761.1 1400330 1401880 D identified by similarity to GB:CAD61135.1; hypothetical protein 1400330..1401880 Acidithiobacillus ferrooxidans ATCC 23270 7135760 YP_002426045.1 CDS AFE_1622 NC_011761.1 1401941 1402057 D identified by glimmer; putative; hypothetical protein 1401941..1402057 Acidithiobacillus ferrooxidans ATCC 23270 7137246 YP_002426046.1 CDS AFE_1623 NC_011761.1 1402091 1402267 D identified by glimmer; putative; hypothetical protein 1402091..1402267 Acidithiobacillus ferrooxidans ATCC 23270 7135355 YP_002426047.1 CDS AFE_1624 NC_011761.1 1402741 1402920 D identified by glimmer; putative; hypothetical protein 1402741..1402920 Acidithiobacillus ferrooxidans ATCC 23270 7135174 YP_002426048.1 CDS AFE_1625 NC_011761.1 1403110 1403754 D identified by glimmer; putative; hypothetical protein 1403110..1403754 Acidithiobacillus ferrooxidans ATCC 23270 7134488 YP_002426049.1 CDS AFE_1626 NC_011761.1 1404035 1404139 D identified by glimmer; putative; hypothetical protein 1404035..1404139 Acidithiobacillus ferrooxidans ATCC 23270 7136222 YP_002426050.1 CDS AFE_1627 NC_011761.1 1404171 1404365 R identified by glimmer; putative; hypothetical protein complement(1404171..1404365) Acidithiobacillus ferrooxidans ATCC 23270 7136902 YP_002426051.1 CDS AFE_1628 NC_011761.1 1404393 1404533 D identified by glimmer; putative; hypothetical protein 1404393..1404533 Acidithiobacillus ferrooxidans ATCC 23270 7135075 YP_002426052.1 CDS AFE_1629 NC_011761.1 1404550 1404741 D identified by glimmer; putative; hypothetical protein 1404550..1404741 Acidithiobacillus ferrooxidans ATCC 23270 7137289 YP_002426053.1 CDS AFE_1631 NC_011761.1 1405113 1405412 D identified by similarity to GB:CAD17227.1; match to protein family HMM TIGR02684; hypothetical protein 1405113..1405412 Acidithiobacillus ferrooxidans ATCC 23270 7135022 YP_002426054.1 CDS AFE_1633 NC_011761.1 1405521 1405826 D identified by glimmer; putative; hypothetical protein 1405521..1405826 Acidithiobacillus ferrooxidans ATCC 23270 7134151 YP_002426055.1 CDS AFE_1632 NC_011761.1 1405747 1406259 R identified by glimmer; putative; hypothetical protein complement(1405747..1406259) Acidithiobacillus ferrooxidans ATCC 23270 7137087 YP_002426056.1 CDS trbB NC_011761.1 1406427 1407395 D identified by similarity to SP:P54907; match to protein family HMM PF00437; match to protein family HMM TIGR02782; P-type conjugative transfer protein TrbB 1406427..1407395 Acidithiobacillus ferrooxidans ATCC 23270 7136743 YP_002426057.1 CDS AFE_1635 NC_011761.1 1407792 1408583 R hypothetical protein complement(1407792..1408583) Acidithiobacillus ferrooxidans ATCC 23270 7136801 YP_002426058.1 CDS AFE_1636 NC_011761.1 1408788 1409174 D identified by glimmer; putative; hypothetical protein 1408788..1409174 Acidithiobacillus ferrooxidans ATCC 23270 7137043 YP_002426059.1 CDS AFE_1637 NC_011761.1 1409178 1409555 D conjugal transfer protein TrbD 1409178..1409555 Acidithiobacillus ferrooxidans ATCC 23270 7134931 YP_002426060.1 CDS AFE_1638 NC_011761.1 1409555 1412077 D identified by similarity to SP:P05353; match to protein family HMM PF03135; conjugal transfer protein trbE 1409555..1412077 Acidithiobacillus ferrooxidans ATCC 23270 7135676 YP_002426061.1 CDS AFE_1639 NC_011761.1 1412074 1412337 D identified by glimmer; putative; hypothetical protein 1412074..1412337 Acidithiobacillus ferrooxidans ATCC 23270 7137103 YP_002426062.1 CDS AFE_1640 NC_011761.1 1412420 1413160 D identified by similarity to SP:P55400; match to protein family HMM TIGR02780; conjugal transfer protein trbJ 1412420..1413160 Acidithiobacillus ferrooxidans ATCC 23270 7136509 YP_002426063.1 CDS AFE_1641 NC_011761.1 1413172 1413426 D lipoprotein 1413172..1413426 Acidithiobacillus ferrooxidans ATCC 23270 7135984 YP_002426064.1 CDS AFE_1642 NC_011761.1 1413442 1415211 D identified by similarity to GB:AAN33564.1; match to protein family HMM TIGR02783; conjugal transfer protein trbL 1413442..1415211 Acidithiobacillus ferrooxidans ATCC 23270 7134169 YP_002426065.1 CDS AFE_1643 NC_011761.1 1415204 1415677 D identified by glimmer; putative; hypothetical protein 1415204..1415677 Acidithiobacillus ferrooxidans ATCC 23270 7135195 YP_002426066.1 CDS AFE_1644 NC_011761.1 1415851 1416318 R identified by similarity to GB:AAN68922.1; hypothetical protein complement(1415851..1416318) Acidithiobacillus ferrooxidans ATCC 23270 7136441 YP_002426067.1 CDS AFE_1645 NC_011761.1 1416346 1416552 R identified by glimmer; putative; hypothetical protein complement(1416346..1416552) Acidithiobacillus ferrooxidans ATCC 23270 7136319 YP_002426068.1 CDS AFE_1646 NC_011761.1 1416685 1418169 R identified by similarity to GB:AAK01318.1; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; serine protease, DO/DeqQ family complement(1416685..1418169) Acidithiobacillus ferrooxidans ATCC 23270 7134150 YP_002426069.1 CDS AFE_1647 NC_011761.1 1418220 1418483 R identified by glimmer; putative; hypothetical protein complement(1418220..1418483) Acidithiobacillus ferrooxidans ATCC 23270 7135783 YP_002426070.1 CDS AFE_1648 NC_011761.1 1418670 1419116 R identified by similarity to SP:Q06823; match to protein family HMM PF00011; heat shock protein, Hsp20 family complement(1418670..1419116) Acidithiobacillus ferrooxidans ATCC 23270 7135731 YP_002426071.1 CDS AFE_1650 NC_011761.1 1419340 1419477 D identified by glimmer; putative; hypothetical protein 1419340..1419477 Acidithiobacillus ferrooxidans ATCC 23270 7134759 YP_002426072.1 CDS AFE_1649 NC_011761.1 1419451 1420206 R identified by similarity to PIR:T51129; hypothetical protein complement(1419451..1420206) Acidithiobacillus ferrooxidans ATCC 23270 7136871 YP_002426073.1 CDS AFE_1651 NC_011761.1 1420394 1421275 D identified by similarity to SP:O34969; match to protein family HMM PF03446; match to protein family HMM PF03807; 3-hydroxyisobutyrate dehydrogenase 1420394..1421275 Acidithiobacillus ferrooxidans ATCC 23270 7134806 YP_002426074.1 CDS AFE_1652 NC_011761.1 1421305 1423572 D identified by match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM TIGR01701; oxidoreductase molybdopterin subunit 1421305..1423572 Acidithiobacillus ferrooxidans ATCC 23270 7136453 YP_002426075.1 CDS AFE_1653 NC_011761.1 1423562 1423831 D identified by glimmer; putative; hypothetical protein 1423562..1423831 Acidithiobacillus ferrooxidans ATCC 23270 7135442 YP_002426076.1 CDS fdhD-1 NC_011761.1 1423810 1424658 D identified by match to protein family HMM PF02634; match to protein family HMM TIGR00129; formate dehydrogenase family accessory protein FdhD 1423810..1424658 Acidithiobacillus ferrooxidans ATCC 23270 7134836 YP_002426077.1 CDS AFE_1655 NC_011761.1 1424667 1425359 R identified by similarity to GB:AAK61303.1; ISAfe6, transposase complement(1424667..1425359) Acidithiobacillus ferrooxidans ATCC 23270 7135400 YP_002426078.1 CDS AFE_1656 NC_011761.1 1425617 1426645 R identified by match to protein family HMM PF00111; match to protein family HMM PF00175; match to protein family HMM PF00970; ferredoxin/oxidoreductase, FAD/NAD-binding complement(1425617..1426645) Acidithiobacillus ferrooxidans ATCC 23270 7135720 YP_002426079.1 CDS AFE_1657 NC_011761.1 1426704 1428374 R catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase complement(1426704..1428374) Acidithiobacillus ferrooxidans ATCC 23270 7135959 YP_002426080.1 CDS AFE_1658 NC_011761.1 1428748 1429416 D identified by match to protein family HMM PF00027; match to protein family HMM PF00325; CarD family transcriptional regulator 1428748..1429416 Acidithiobacillus ferrooxidans ATCC 23270 7135643 YP_002426081.1 CDS AFE_1660 NC_011761.1 1429450 1429716 D identified by glimmer; putative; hypothetical protein 1429450..1429716 Acidithiobacillus ferrooxidans ATCC 23270 7136932 YP_002426082.1 CDS AFE_1659 NC_011761.1 1429682 1430710 R identified by glimmer; putative; hypothetical protein complement(1429682..1430710) Acidithiobacillus ferrooxidans ATCC 23270 7134231 YP_002426083.1 CDS AFE_1661 NC_011761.1 1430837 1433314 R identified by similarity to GB:AAM37026.1; hypothetical protein complement(1430837..1433314) Acidithiobacillus ferrooxidans ATCC 23270 7136386 YP_002426084.1 CDS AFE_1662 NC_011761.1 1433317 1434957 R identified by match to protein family HMM PF00361; NADH dehydrogenase complement(1433317..1434957) Acidithiobacillus ferrooxidans ATCC 23270 7134501 YP_002426085.1 CDS glcF NC_011761.1 1435261 1436511 R identified by similarity to SP:P52074; match to protein family HMM PF00037; match to protein family HMM PF02754; glycolate oxidase, iron-sulfur subunit complement(1435261..1436511) Acidithiobacillus ferrooxidans ATCC 23270 7134399 YP_002426086.1 CDS glcE NC_011761.1 1436521 1437633 R identified by similarity to SP:P52073; match to protein family HMM PF01565; glycolate oxidase FAD binding subunit complement(1436521..1437633) Acidithiobacillus ferrooxidans ATCC 23270 7135565 YP_002426087.1 CDS glcD NC_011761.1 1437587 1439053 R identified by match to protein family HMM PF01565; match to protein family HMM PF02913; glycolate oxidase subunit GlcD complement(1437587..1439053) Acidithiobacillus ferrooxidans ATCC 23270 7135121 YP_002426088.1 CDS AFE_1666 NC_011761.1 1439068 1440405 R identified by similarity to PIR:AG2237; hypothetical protein complement(1439068..1440405) Acidithiobacillus ferrooxidans ATCC 23270 7136212 YP_002426089.1 CDS AFE_1667 NC_011761.1 1440418 1442586 R identified by match to protein family HMM PF02779; transketolase complement(1440418..1442586) Acidithiobacillus ferrooxidans ATCC 23270 7137191 YP_002426090.1 CDS AFE_1668 NC_011761.1 1442735 1443514 D identified by match to protein family HMM PF01614; match to protein family HMM PF09339; IclR family transcriptional regulator 1442735..1443514 Acidithiobacillus ferrooxidans ATCC 23270 7136348 YP_002426091.1 CDS AFE_1669 NC_011761.1 1443814 1444083 D identified by glimmer; putative; hypothetical protein 1443814..1444083 Acidithiobacillus ferrooxidans ATCC 23270 7134743 YP_002426092.1 CDS AFE_1670 NC_011761.1 1444150 1445028 D identified by similarity to PIR:AG2067; hypothetical protein 1444150..1445028 Acidithiobacillus ferrooxidans ATCC 23270 7134597 YP_002426093.1 CDS AFE_1671 NC_011761.1 1445085 1445645 D identified by glimmer; putative; hypothetical protein 1445085..1445645 Acidithiobacillus ferrooxidans ATCC 23270 7136575 YP_002426094.1 CDS AFE_1672 NC_011761.1 1445713 1446750 D catalyzes the formation of N-carbamoyl-L-aspartate from (S)-dihydroorotate in pyrimidine biosynthesis; dihydroorotase 1445713..1446750 Acidithiobacillus ferrooxidans ATCC 23270 7135932 YP_002426095.1 CDS ilvD-1 NC_011761.1 1446832 1448505 D catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase 1446832..1448505 Acidithiobacillus ferrooxidans ATCC 23270 7134615 YP_002426096.1 CDS AFE_1674 NC_011761.1 1448509 1449495 R identified by match to protein family HMM PF01300; match to protein family HMM PF03481; match to protein family HMM TIGR00057; Sua5/YciO/YrdC family protein complement(1448509..1449495) Acidithiobacillus ferrooxidans ATCC 23270 7137051 YP_002426097.1 CDS bioD-1 NC_011761.1 1449690 1450445 R identified by match to protein family HMM TIGR00347; dethiobiotin synthetase complement(1449690..1450445) Acidithiobacillus ferrooxidans ATCC 23270 7135465 YP_002426098.1 CDS AFE_1676 NC_011761.1 1450475 1451656 R identified by match to protein family HMM PF01116; fructose-bisphosphate aldolase class II family protein complement(1450475..1451656) Acidithiobacillus ferrooxidans ATCC 23270 7135328 YP_002426099.1 CDS AFE_1677 NC_011761.1 1451782 1454133 R identified by match to protein family HMM PF00092; von Willebrand factor type A domain-containing protein complement(1451782..1454133) Acidithiobacillus ferrooxidans ATCC 23270 7136785 YP_002426100.1 CDS p30 NC_011761.1 1454149 1454952 R identified by similarity to GB:BAA76361.1; match to protein family HMM PF07728; match to protein family HMM PF08406; p30 protein complement(1454149..1454952) Acidithiobacillus ferrooxidans ATCC 23270 7134783 YP_002426101.1 CDS AFE_1679 NC_011761.1 1454983 1455237 R identified by similarity to GB:CAB45259.1; hypothetical protein complement(1454983..1455237) Acidithiobacillus ferrooxidans ATCC 23270 7135655 YP_002426102.1 CDS AFE_1680 NC_011761.1 1455228 1455863 R identified by similarity to GB:AAB36936.1; match to protein family HMM PF01656; hypothetical protein complement(1455228..1455863) Acidithiobacillus ferrooxidans ATCC 23270 7135420 YP_002426103.1 CDS AFE_1681 NC_011761.1 1455900 1456178 R identified by similarity to GB:CAE21373.1; hypothetical protein complement(1455900..1456178) Acidithiobacillus ferrooxidans ATCC 23270 7134452 YP_002426104.1 CDS bfr NC_011761.1 1456175 1456618 R identified by match to protein family HMM PF00210; bacterioferritin complement(1456175..1456618) Acidithiobacillus ferrooxidans ATCC 23270 7134275 YP_002426105.1 CDS cscE NC_011761.1 1456632 1456970 R identified by similarity to GB:AAD30516.1; match to protein family HMM PF00936; carboxysome shell peptide complement(1456632..1456970) Acidithiobacillus ferrooxidans ATCC 23270 7137305 YP_002426106.1 CDS cscD NC_011761.1 1457016 1457318 R identified by similarity to GB:AAD30515.1; match to protein family HMM PF00936; carboxysome shell peptide complement(1457016..1457318) Acidithiobacillus ferrooxidans ATCC 23270 7137282 YP_002426107.1 CDS cscC NC_011761.1 1457357 1457653 R identified by similarity to GB:AAD30514.1; match to protein family HMM PF00936; carboxysome shell peptide complement(1457357..1457653) Acidithiobacillus ferrooxidans ATCC 23270 7136494 YP_002426108.1 CDS cscB NC_011761.1 1457685 1457951 R identified by similarity to GB:AAD30513.1; match to protein family HMM PF03319; match to protein family HMM TIGR02704; carboxysome peptide B complement(1457685..1457951) Acidithiobacillus ferrooxidans ATCC 23270 7134133 YP_002426109.1 CDS cscA NC_011761.1 1457962 1458210 R identified by similarity to GB:AAD30512.1; match to protein family HMM PF03319; match to protein family HMM TIGR02703; carboxysome peptide A complement(1457962..1458210) Acidithiobacillus ferrooxidans ATCC 23270 7134508 YP_002426110.1 CDS cab2 NC_011761.1 1458207 1459808 R identified by similarity to GB:AAD30511.1; match to protein family HMM PF08936; match to protein family HMM TIGR02701; carboxysome shell carbonic anhydrase complement(1458207..1459808) Acidithiobacillus ferrooxidans ATCC 23270 7136419 YP_002426111.1 CDS AFE_1689 NC_011761.1 1459864 1462152 R Tat (twin-arginine translocation) pathway signal sequence domain-containing protein complement(1459864..1462152) Acidithiobacillus ferrooxidans ATCC 23270 7136863 YP_002426112.1 CDS cbbS-2 NC_011761.1 1462235 1462567 R identified by match to protein family HMM PF00101; ribulose bisphosphate carboxylase, small subunit complement(1462235..1462567) Acidithiobacillus ferrooxidans ATCC 23270 7134100 YP_002426113.1 CDS rbcL NC_011761.1 1462659 1464080 R type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase complement(1462659..1464080) Acidithiobacillus ferrooxidans ATCC 23270 7134966 YP_002426114.1 CDS cbbR NC_011761.1 1464153 1465151 D identified by similarity to SP:Q06610; match to protein family HMM PF00126; match to protein family HMM PF03466; rubisco operon transcriptional regulator 1464153..1465151 Acidithiobacillus ferrooxidans ATCC 23270 7137077 YP_002426115.1 CDS AFE_1693 NC_011761.1 1465595 1466452 D identified by similarity to GB:CAB88947.1; hypothetical protein 1465595..1466452 Acidithiobacillus ferrooxidans ATCC 23270 7134135 YP_002426116.1 CDS AFE_1694 NC_011761.1 1466762 1467430 D identified by similarity to SP:P54914; conjugal transfer protein 1466762..1467430 Acidithiobacillus ferrooxidans ATCC 23270 7136500 YP_002426117.1 CDS AFE_1695 NC_011761.1 1467443 1468588 D identified by similarity to SP:P54915; match to protein family HMM PF03524; conjugal transfer protein 1467443..1468588 Acidithiobacillus ferrooxidans ATCC 23270 7135004 YP_002426118.1 CDS AFE_1696 NC_011761.1 1468590 1469591 D conjugal transfer protein 1468590..1469591 Acidithiobacillus ferrooxidans ATCC 23270 7134519 YP_002426119.1 CDS AFE_1698 NC_011761.1 1471391 1472062 D identified by match to protein family HMM PF01464; conjugal transfer -like protein 1471391..1472062 Acidithiobacillus ferrooxidans ATCC 23270 7136451 YP_002426120.1 CDS AFE_1699 NC_011761.1 1472073 1474577 D identified by match to protein family HMM PF02534; TraG/TraD family protein 1472073..1474577 Acidithiobacillus ferrooxidans ATCC 23270 7135759 YP_002426121.1 CDS AFE_1700 NC_011761.1 1474687 1474881 D identified by similarity to PIR:E85625; hypothetical protein 1474687..1474881 Acidithiobacillus ferrooxidans ATCC 23270 7135026 YP_002426122.1 CDS AFE_1702 NC_011761.1 1475207 1475395 R identified by glimmer; putative; hypothetical protein complement(1475207..1475395) Acidithiobacillus ferrooxidans ATCC 23270 7135577 YP_002426123.1 CDS AFE_1703 NC_011761.1 1475398 1475625 R identified by glimmer; putative; hypothetical protein complement(1475398..1475625) Acidithiobacillus ferrooxidans ATCC 23270 7137242 YP_002426124.1 CDS AFE_1704 NC_011761.1 1475603 1475839 R identified by glimmer; putative; hypothetical protein complement(1475603..1475839) Acidithiobacillus ferrooxidans ATCC 23270 7136972 YP_002426125.1 CDS AFE_1705 NC_011761.1 1475927 1476058 D identified by glimmer; putative; hypothetical protein 1475927..1476058 Acidithiobacillus ferrooxidans ATCC 23270 7136120 YP_002426126.1 CDS AFE_1707 NC_011761.1 1476740 1479913 D identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box-containing diguanylate cyclase 1476740..1479913 Acidithiobacillus ferrooxidans ATCC 23270 7135293 YP_002426127.1 CDS AFE_1706 NC_011761.1 1479769 1481406 R identified by match to protein family HMM PF03050; ISAfe4, transposase orf3 complement(1479769..1481406) Acidithiobacillus ferrooxidans ATCC 23270 7135564 YP_002426128.1 CDS AFE_1708 NC_011761.1 1481456 1481803 R identified by match to protein family HMM PF05717; ISAfe4, transposase orf2 complement(1481456..1481803) Acidithiobacillus ferrooxidans ATCC 23270 7136372 YP_002426129.1 CDS AFE_1709 NC_011761.1 1481794 1482126 R Assignment based on BLAST search at the ISFinder database, and proximity to other transposase ORFs.; ISAfe4, transposase orf1 complement(1481794..1482126) Acidithiobacillus ferrooxidans ATCC 23270 7135324 YP_002426130.1 CDS AFE_1710 NC_011761.1 1482240 1482662 D identified by glimmer; putative; hypothetical protein 1482240..1482662 Acidithiobacillus ferrooxidans ATCC 23270 7136407 YP_002426131.1 CDS AFE_1711 NC_011761.1 1482799 1483356 R identified by glimmer; putative; hypothetical protein complement(1482799..1483356) Acidithiobacillus ferrooxidans ATCC 23270 7136615 YP_002426132.1 CDS AFE_1712 NC_011761.1 1483680 1485677 R identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM TIGR00254; diguanylate cyclase complement(1483680..1485677) Acidithiobacillus ferrooxidans ATCC 23270 7134755 YP_002426133.1 CDS AFE_1713 NC_011761.1 1486371 1486499 R identified by glimmer; putative; hypothetical protein complement(1486371..1486499) Acidithiobacillus ferrooxidans ATCC 23270 7135893 YP_002426134.1 CDS AFE_1714 NC_011761.1 1486744 1486932 R identified by glimmer; putative; hypothetical protein complement(1486744..1486932) Acidithiobacillus ferrooxidans ATCC 23270 7137115 YP_002426135.1 CDS AFE_1715 NC_011761.1 1486885 1487013 D identified by glimmer; putative; hypothetical protein 1486885..1487013 Acidithiobacillus ferrooxidans ATCC 23270 7135501 YP_002426136.1 CDS AFE_1716 NC_011761.1 1487170 1488069 R GTP-binding protein complement(1487170..1488069) Acidithiobacillus ferrooxidans ATCC 23270 7134965 YP_002426137.1 CDS AFE_1718 NC_011761.1 1488207 1488497 D identified by glimmer; putative; hypothetical protein 1488207..1488497 Acidithiobacillus ferrooxidans ATCC 23270 7135029 YP_002426138.1 CDS AFE_1717 NC_011761.1 1488397 1488654 R identified by glimmer; putative; hypothetical protein complement(1488397..1488654) Acidithiobacillus ferrooxidans ATCC 23270 7135042 YP_002426139.1 CDS AFE_1719 NC_011761.1 1488738 1489991 R identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; parB family protein complement(1488738..1489991) Acidithiobacillus ferrooxidans ATCC 23270 7136810 YP_002426140.1 CDS AFE_1720 NC_011761.1 1489993 1490763 R identified by match to protein family HMM PF01656; parA family protein complement(1489993..1490763) Acidithiobacillus ferrooxidans ATCC 23270 7135670 YP_002426141.1 CDS AFE_1721 NC_011761.1 1490742 1491182 R identified by glimmer; putative; hypothetical protein complement(1490742..1491182) Acidithiobacillus ferrooxidans ATCC 23270 7137111 YP_002426142.1 CDS AFE_1722 NC_011761.1 1491312 1491680 D identified by glimmer; putative; hypothetical protein 1491312..1491680 Acidithiobacillus ferrooxidans ATCC 23270 7136431 YP_002426143.1 CDS AFE_1723 NC_011761.1 1491691 1492689 R identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family complement(1491691..1492689) Acidithiobacillus ferrooxidans ATCC 23270 7134603 YP_002426144.1 CDS AFE_1724 NC_011761.1 1492849 1492941 D identified by glimmer; putative; hypothetical protein 1492849..1492941 Acidithiobacillus ferrooxidans ATCC 23270 7135781 YP_002426145.1 CDS AFE_1725 NC_011761.1 1493950 1496079 D identified by match to protein family HMM PF00563; match to protein family HMM PF00989; match to protein family HMM PF00990; match to protein family HMM PF08448; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box-containing diguanylate cyclase 1493950..1496079 Acidithiobacillus ferrooxidans ATCC 23270 7137181 YP_002426146.1 CDS AFE_1726 NC_011761.1 1496206 1496751 R identified by similarity to SP:Q44350; conjugal transfer protein TraF complement(1496206..1496751) Acidithiobacillus ferrooxidans ATCC 23270 7136322 YP_002426147.1 CDS AFE_1727 NC_011761.1 1496723 1497163 D identified by glimmer; putative; hypothetical protein 1496723..1497163 Acidithiobacillus ferrooxidans ATCC 23270 7134083 YP_002426148.1 CDS AFE_1728 NC_011761.1 1497144 1497485 D identified by similarity to GB:CAC46678.1; hypothetical protein 1497144..1497485 Acidithiobacillus ferrooxidans ATCC 23270 7134510 YP_002426149.1 CDS AFE_1729 NC_011761.1 1497493 1497624 R identified by glimmer; putative; hypothetical protein complement(1497493..1497624) Acidithiobacillus ferrooxidans ATCC 23270 7136235 YP_002426150.1 CDS AFE_1730 NC_011761.1 1497668 1497931 R identified by glimmer; putative; hypothetical protein complement(1497668..1497931) Acidithiobacillus ferrooxidans ATCC 23270 7135432 YP_002426151.1 CDS AFE_1731 NC_011761.1 1498010 1499350 R identified by similarity to SP:Q44351; conjugal transfer protein TraB complement(1498010..1499350) Acidithiobacillus ferrooxidans ATCC 23270 7136885 YP_002426152.1 CDS AFE_1732 NC_011761.1 1499609 1499839 D identified by glimmer; putative; hypothetical protein 1499609..1499839 Acidithiobacillus ferrooxidans ATCC 23270 7135200 YP_002426153.1 CDS AFE_1733 NC_011761.1 1499851 1500294 D identified by similarity to PIR:E85734; match to protein family HMM PF03681; hypothetical protein 1499851..1500294 Acidithiobacillus ferrooxidans ATCC 23270 7134696 YP_002426154.1 CDS AFE_1734 NC_011761.1 1500400 1500696 D identified by similarity to PIR:G82661; match to protein family HMM TIGR02684; hypothetical protein 1500400..1500696 Acidithiobacillus ferrooxidans ATCC 23270 7136982 YP_002426155.1 CDS AFE_1735 NC_011761.1 1500938 1501168 R identified by glimmer; putative; hypothetical protein complement(1500938..1501168) Acidithiobacillus ferrooxidans ATCC 23270 7136719 YP_002426156.1 CDS AFE_1736 NC_011761.1 1501146 1501406 R identified by glimmer; putative; hypothetical protein complement(1501146..1501406) Acidithiobacillus ferrooxidans ATCC 23270 7136952 YP_002426157.1 CDS AFE_1737 NC_011761.1 1501387 1501536 R identified by glimmer; putative; hypothetical protein complement(1501387..1501536) Acidithiobacillus ferrooxidans ATCC 23270 7134402 YP_002426158.1 CDS topB NC_011761.1 1501586 1503685 R identified by match to protein family HMM PF01131; match to protein family HMM PF01751; match to protein family HMM TIGR01056; DNA topoisomerase III complement(1501586..1503685) Acidithiobacillus ferrooxidans ATCC 23270 7135182 YP_002426159.1 CDS AFE_1739 NC_011761.1 1503724 1503915 R identified by glimmer; putative; hypothetical protein complement(1503724..1503915) Acidithiobacillus ferrooxidans ATCC 23270 7134911 YP_002426160.1 CDS AFE_1740 NC_011761.1 1504835 1506211 R identified by match to protein family HMM PF00614; phospholipase D complement(1504835..1506211) Acidithiobacillus ferrooxidans ATCC 23270 7135920 YP_002426161.1 CDS AFE_1741 NC_011761.1 1506248 1508077 R identified by match to protein family HMM PF00158; match to protein family HMM PF01590; match to protein family HMM PF02954; sigma-54 dependent transcriptional regulator complement(1506248..1508077) Acidithiobacillus ferrooxidans ATCC 23270 7136424 YP_002426162.1 CDS AFE_1742 NC_011761.1 1508468 1509988 D identified by match to protein family HMM PF00171; aldehyde dehydrogenase (NAD) family protein 1508468..1509988 Acidithiobacillus ferrooxidans ATCC 23270 7135874 YP_002426163.1 CDS AFE_1743 NC_011761.1 1510065 1510436 D identified by similarity to PIR:H83734; hypothetical protein 1510065..1510436 Acidithiobacillus ferrooxidans ATCC 23270 7136326 YP_002426164.1 CDS AFE_1744 NC_011761.1 1510884 1510976 R identified by glimmer; putative; hypothetical protein complement(1510884..1510976) Acidithiobacillus ferrooxidans ATCC 23270 7137090 YP_002426165.1 CDS AFE_1745 NC_011761.1 1511065 1511598 R identified by similarity to GB:CAE32968.1; hypothetical protein complement(1511065..1511598) Acidithiobacillus ferrooxidans ATCC 23270 7135327 YP_002426166.1 CDS AFE_1746 NC_011761.1 1511742 1511879 R identified by glimmer; putative; hypothetical protein complement(1511742..1511879) Acidithiobacillus ferrooxidans ATCC 23270 7134041 YP_002426167.1 CDS AFE_1749 NC_011761.1 1512347 1512931 D identified by similarity to PIR:AC2205; match to protein family HMM PF02586; hypothetical protein 1512347..1512931 Acidithiobacillus ferrooxidans ATCC 23270 7136438 YP_002426168.1 CDS AFE_1748 NC_011761.1 1512696 1513283 R identified by glimmer; putative; hypothetical protein complement(1512696..1513283) Acidithiobacillus ferrooxidans ATCC 23270 7136142 YP_002426169.1 CDS umuD NC_011761.1 1513246 1513740 D identified by similarity to SP:P04153; match to protein family HMM PF00717; umuD protein 1513246..1513740 Acidithiobacillus ferrooxidans ATCC 23270 7136573 YP_002426170.1 CDS AFE_1751 NC_011761.1 1513748 1515031 D identified by match to protein family HMM PF00817; umuC protein 1513748..1515031 Acidithiobacillus ferrooxidans ATCC 23270 7134750 YP_002426171.1 CDS AFE_1752 NC_011761.1 1515103 1516281 D identified by similarity to GB:AAO54594.1; hypothetical protein 1515103..1516281 Acidithiobacillus ferrooxidans ATCC 23270 7135691 YP_002426172.1 CDS kup NC_011761.1 1516487 1518421 D identified by match to protein family HMM PF02705; potassium uptake protein 1516487..1518421 Acidithiobacillus ferrooxidans ATCC 23270 7134793 YP_002426173.1 CDS AFE_1754 NC_011761.1 1518552 1518866 D identified by similarity to SP:Q46560; match to protein family HMM PF01381; match to protein family HMM TIGR02607; virulence-associated protein 1518552..1518866 Acidithiobacillus ferrooxidans ATCC 23270 7135396 YP_002426174.1 CDS AFE_1755 NC_011761.1 1520072 1520764 D identified by similarity to GB:AAN66820.1; hypothetical protein 1520072..1520764 Acidithiobacillus ferrooxidans ATCC 23270 7134424 YP_002426175.1 CDS AFE_1756 NC_011761.1 1520790 1520975 R identified by glimmer; putative; hypothetical protein complement(1520790..1520975) Acidithiobacillus ferrooxidans ATCC 23270 7135549 YP_002426176.1 CDS AFE_1757 NC_011761.1 1521058 1521363 R identified by glimmer; putative; hypothetical protein complement(1521058..1521363) Acidithiobacillus ferrooxidans ATCC 23270 7134255 YP_002426177.1 CDS AFE_1758 NC_011761.1 1521773 1522300 D identified by glimmer; putative; hypothetical protein 1521773..1522300 Acidithiobacillus ferrooxidans ATCC 23270 7137297 YP_002426178.1 CDS AFE_1759 NC_011761.1 1522505 1522636 R identified by glimmer; putative; hypothetical protein complement(1522505..1522636) Acidithiobacillus ferrooxidans ATCC 23270 7134097 YP_002426179.1 CDS mutS NC_011761.1 1522800 1525412 R identified by match to protein family HMM PF00488; match to protein family HMM PF01624; match to protein family HMM PF05188; match to protein family HMM PF05190; match to protein family HMM PF05192; match to protein family HMM TIGR01070; DNA mismatch repair protein MutS complement(1522800..1525412) Acidithiobacillus ferrooxidans ATCC 23270 7134991 YP_002426180.1 CDS AFE_1761 NC_011761.1 1525437 1525673 R identified by similarity to GB:AAQ60975.1; hypothetical protein complement(1525437..1525673) Acidithiobacillus ferrooxidans ATCC 23270 7135449 YP_002426181.1 CDS AFE_1762 NC_011761.1 1525721 1525981 D identified by similarity to SP:Q9F2U7; hypothetical protein 1525721..1525981 Acidithiobacillus ferrooxidans ATCC 23270 7134925 YP_002426182.1 CDS AFE_1763 NC_011761.1 1526033 1527241 D identified by match to protein family HMM PF00534; group 1 glycosyl transferase 1526033..1527241 Acidithiobacillus ferrooxidans ATCC 23270 7137071 YP_002426183.1 CDS AFE_1764 NC_011761.1 1527473 1528165 R identified by match to protein family HMM PF01027; hypothetical protein complement(1527473..1528165) Acidithiobacillus ferrooxidans ATCC 23270 7135050 YP_002426184.1 CDS AFE_1765 NC_011761.1 1528273 1528413 D identified by glimmer; putative; hypothetical protein 1528273..1528413 Acidithiobacillus ferrooxidans ATCC 23270 7135584 YP_002426185.1 CDS AFE_1767 NC_011761.1 1528394 1529056 D identified by similarity to SP:P76281; match to protein family HMM PF00929; exodeoxyribonuclease X 1528394..1529056 Acidithiobacillus ferrooxidans ATCC 23270 7136599 YP_002426186.1 CDS AFE_1766 NC_011761.1 1529029 1529655 R identified by glimmer; putative; hypothetical protein complement(1529029..1529655) Acidithiobacillus ferrooxidans ATCC 23270 7136986 YP_002426187.1 CDS AFE_1768 NC_011761.1 1529724 1530083 D identified by glimmer; putative; hypothetical protein 1529724..1530083 Acidithiobacillus ferrooxidans ATCC 23270 7136463 YP_002426188.1 CDS AFE_1769 NC_011761.1 1530100 1533933 R identified by similarity to GB:AAQ61895.1; match to protein family HMM PF01565; match to protein family HMM PF02754; match to protein family HMM PF02913; oxidoreductase, FAD-binding complement(1530100..1533933) Acidithiobacillus ferrooxidans ATCC 23270 7135323 YP_002426189.1 CDS panC NC_011761.1 1533933 1534769 R catalyzes the formation of (R)-pantothenate from pantoate and beta-alanine; pantoate--beta-alanine ligase complement(1533933..1534769) Acidithiobacillus ferrooxidans ATCC 23270 7135652 YP_002426190.1 CDS panB NC_011761.1 1534771 1535556 R identified by similarity to SP:P31057; match to protein family HMM PF02548; match to protein family HMM TIGR00222; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(1534771..1535556) Acidithiobacillus ferrooxidans ATCC 23270 7135434 YP_002426191.1 CDS AFE_1772 NC_011761.1 1535549 1536160 R identified by similarity to SP:Q59483; similarity to SP:Q59484; deoxyguanosine kinase/deoxyadenosine kinase complement(1535549..1536160) Acidithiobacillus ferrooxidans ATCC 23270 7136800 YP_002426192.1 CDS AFE_1774 NC_011761.1 1536682 1538034 R identified by match to protein family HMM PF01743; polyA polymerase family protein complement(1536682..1538034) Acidithiobacillus ferrooxidans ATCC 23270 7135123 YP_002426193.1 CDS pcnB NC_011761.1 1538056 1539489 R identified by match to protein family HMM PF01743; match to protein family HMM TIGR01942; polyA polymerase complement(1538056..1539489) Acidithiobacillus ferrooxidans ATCC 23270 7134173 YP_002426194.1 CDS AFE_1776 NC_011761.1 1539684 1540646 R identified by similarity to SP:O22007; match to protein family HMM PF00535; glycosyl transferase family protein complement(1539684..1540646) Acidithiobacillus ferrooxidans ATCC 23270 7136741 YP_002426195.1 CDS guaB NC_011761.1 1540827 1542287 D identified by similarity to SP:P06981; match to protein family HMM PF00478; match to protein family HMM PF00571; match to protein family HMM TIGR01302; inosine-5'-monophosphate dehydrogenase 1540827..1542287 Acidithiobacillus ferrooxidans ATCC 23270 7137177 YP_002426196.1 CDS guaA NC_011761.1 1542291 1543835 D identified by similarity to SP:P49057; match to protein family HMM PF00117; match to protein family HMM PF00958; match to protein family HMM TIGR00884; match to protein family HMM TIGR00888; GMP synthase 1542291..1543835 Acidithiobacillus ferrooxidans ATCC 23270 7135871 YP_002426197.1 CDS AFE_1779 NC_011761.1 1544009 1544263 D identified by similarity to SP:P55510; plasmid stability protein 1544009..1544263 Acidithiobacillus ferrooxidans ATCC 23270 7135306 YP_002426198.1 CDS AFE_1780 NC_011761.1 1544264 1544683 D identified by match to protein family HMM PF01850; plasmid stability protein 1544264..1544683 Acidithiobacillus ferrooxidans ATCC 23270 7134280 YP_002426199.1 CDS AFE_1781 NC_011761.1 1544701 1544913 D identified by match to protein family HMM PF04014; match to protein family HMM TIGR01439; AbrB family transcriptional regulator 1544701..1544913 Acidithiobacillus ferrooxidans ATCC 23270 7136181 YP_002426200.1 CDS AFE_1782 NC_011761.1 1545748 1547367 D identified by match to protein family HMM PF00324; amino acid permease family protein 1545748..1547367 Acidithiobacillus ferrooxidans ATCC 23270 7137214 YP_002426201.1 CDS proB-2 NC_011761.1 1547506 1548657 D identified by similarity to SP:P07005; match to protein family HMM PF00696; match to protein family HMM PF01472; match to protein family HMM TIGR01027; glutamate 5-kinase 1547506..1548657 Acidithiobacillus ferrooxidans ATCC 23270 7134243 YP_002426202.1 CDS AFE_1784 NC_011761.1 1548733 1551408 R identified by match to protein family HMM PF00924; mechanosensitive ion channel family protein complement(1548733..1551408) Acidithiobacillus ferrooxidans ATCC 23270 7136884 YP_002426203.1 CDS AFE_1785 NC_011761.1 1551423 1551740 D identified by glimmer; putative; hypothetical protein 1551423..1551740 Acidithiobacillus ferrooxidans ATCC 23270 7135233 YP_002426204.1 CDS AFE_1786 NC_011761.1 1551767 1552591 R identified by similarity to GB:CAD16844.1; hypothetical protein complement(1551767..1552591) Acidithiobacillus ferrooxidans ATCC 23270 7134728 YP_002426205.1 CDS AFE_1787 NC_011761.1 1552730 1553365 D identified by match to protein family HMM PF01300; match to protein family HMM TIGR00057; Sua5/YciO/YrdC/YwlC family protein 1552730..1553365 Acidithiobacillus ferrooxidans ATCC 23270 7136815 YP_002426206.1 CDS AFE_1788 NC_011761.1 1553416 1554075 D identified by similarity to GB:CAD85637.1; match to protein family HMM PF02163; membrane-associated zinc metalloprotease 1553416..1554075 Acidithiobacillus ferrooxidans ATCC 23270 7136203 YP_002426207.1 CDS trpS NC_011761.1 1554075 1555286 D catalyzes a two-step reaction, first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; tryptophanyl-tRNA synthetase 1554075..1555286 Acidithiobacillus ferrooxidans ATCC 23270 7134102 YP_002426208.1 CDS scpA NC_011761.1 1555267 1556088 D identified by similarity to GB:AAM37169.1; match to protein family HMM PF02616; segregation and condensation protein A 1555267..1556088 Acidithiobacillus ferrooxidans ATCC 23270 7134236 YP_002426209.1 CDS scpB NC_011761.1 1556088 1556621 D identified by similarity to PIR:F81941; match to protein family HMM PF04079; match to protein family HMM TIGR00281; segregation and condensation protein B 1556088..1556621 Acidithiobacillus ferrooxidans ATCC 23270 7134605 YP_002426210.1 CDS AFE_1792 NC_011761.1 1556784 1558088 D identified by similarity to GB:AAF72963.1; match to protein family HMM PF00070; match to protein family HMM PF07992; sulfide-quinone reductase 1556784..1558088 Acidithiobacillus ferrooxidans ATCC 23270 7134162 YP_002426211.1 CDS rluB NC_011761.1 1558212 1559090 D identified by similarity to SP:P37765; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal large subunit pseudouridine synthase B 1558212..1559090 Acidithiobacillus ferrooxidans ATCC 23270 7136426 YP_002426212.1 CDS AFE_1794 NC_011761.1 1559100 1559771 D identified by match to protein family HMM PF00633; match to protein family HMM PF00730; base excision repair protein, HhH-GPD family 1559100..1559771 Acidithiobacillus ferrooxidans ATCC 23270 7134638 YP_002426213.1 CDS AFE_1796 NC_011761.1 1559740 1560156 D identified by glimmer; putative; hypothetical protein 1559740..1560156 Acidithiobacillus ferrooxidans ATCC 23270 7135700 YP_002426214.1 CDS AFE_1795 NC_011761.1 1560075 1560347 R identified by glimmer; putative; hypothetical protein complement(1560075..1560347) Acidithiobacillus ferrooxidans ATCC 23270 7135418 YP_002426215.1 CDS AFE_1797 NC_011761.1 1560355 1561866 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter complement(1560355..1561866) Acidithiobacillus ferrooxidans ATCC 23270 7137098 YP_002426216.1 CDS AFE_1798 NC_011761.1 1561890 1562447 R hypothetical protein complement(1561890..1562447) Acidithiobacillus ferrooxidans ATCC 23270 7135251 YP_002426217.1 CDS AFE_1799 NC_011761.1 1562460 1564985 R identified by match to protein family HMM PF00343; match to protein family HMM TIGR02094; alpha-glucan phosphorylase family protein complement(1562460..1564985) Acidithiobacillus ferrooxidans ATCC 23270 7134053 YP_002426218.1 CDS AFE_1800 NC_011761.1 1565042 1565392 R identified by similarity to SP:P08734; enolase domain-containing protein complement(1565042..1565392) Acidithiobacillus ferrooxidans ATCC 23270 7136776 YP_002426219.1 CDS pyk NC_011761.1 1565404 1566828 R identified by match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase complement(1565404..1566828) Acidithiobacillus ferrooxidans ATCC 23270 7134621 YP_002426220.1 CDS AFE_1802 NC_011761.1 1566828 1567748 R identified by similarity to SP:P58315; match to protein family HMM PF01791; aldolase complement(1566828..1567748) Acidithiobacillus ferrooxidans ATCC 23270 7134494 YP_002426221.1 CDS AFE_1803 NC_011761.1 1567741 1569138 R identified by match to protein family HMM PF00070; match to protein family HMM PF02852; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(1567741..1569138) Acidithiobacillus ferrooxidans ATCC 23270 7135718 YP_002426222.1 CDS AFE_1804 NC_011761.1 1569192 1569356 R identified by glimmer; putative; hypothetical protein complement(1569192..1569356) Acidithiobacillus ferrooxidans ATCC 23270 7135112 YP_002426223.1 CDS AFE_1805 NC_011761.1 1569338 1569538 R identified by glimmer; putative; hypothetical protein complement(1569338..1569538) Acidithiobacillus ferrooxidans ATCC 23270 7135523 YP_002426224.1 CDS AFE_1806 NC_011761.1 1569699 1570100 D identified by glimmer; putative; hypothetical protein 1569699..1570100 Acidithiobacillus ferrooxidans ATCC 23270 7134545 YP_002426225.1 CDS AFE_1807 NC_011761.1 1570226 1571185 R identified by match to protein family HMM PF00294; match to protein family HMM TIGR03168; carbohydrate kinase, PfkB family complement(1570226..1571185) Acidithiobacillus ferrooxidans ATCC 23270 7137313 YP_002426226.1 CDS AFE_1808 NC_011761.1 1571182 1572105 R identified by match to protein family HMM PF01515; phosphate acetyl/butyryl transferase complement(1571182..1572105) Acidithiobacillus ferrooxidans ATCC 23270 7137030 YP_002426227.1 CDS AFE_1809 NC_011761.1 1572130 1573629 R identified by similarity to SP:Q46909; match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family protein complement(1572130..1573629) Acidithiobacillus ferrooxidans ATCC 23270 7134842 YP_002426228.1 CDS ackA NC_011761.1 1573626 1574810 R identified by match to protein family HMM PF00871; match to protein family HMM TIGR00016; acetate kinase complement(1573626..1574810) Acidithiobacillus ferrooxidans ATCC 23270 7136531 YP_002426229.1 CDS AFE_1811 NC_011761.1 1574813 1576081 R identified by match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; 2-oxo acid dehydrogenase, acyltransferase complement(1574813..1576081) Acidithiobacillus ferrooxidans ATCC 23270 7136127 YP_002426230.1 CDS AFE_1812 NC_011761.1 1576078 1577070 R identified by similarity to SP:P51266; match to protein family HMM PF02779; match to protein family HMM PF02780; dehydrogenase complex, E1 component subunit beta complement(1576078..1577070) Acidithiobacillus ferrooxidans ATCC 23270 7134233 YP_002426231.1 CDS AFE_1813 NC_011761.1 1577067 1578131 R identified by match to protein family HMM PF00676; dehydrogenase complex, E1 component subunit alpha complement(1577067..1578131) Acidithiobacillus ferrooxidans ATCC 23270 7137206 YP_002426232.1 CDS AFE_1814 NC_011761.1 1578124 1578474 R identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; alkylhydroperoxidase AhpD domain-containing protein complement(1578124..1578474) Acidithiobacillus ferrooxidans ATCC 23270 7137262 YP_002426233.1 CDS gpmI-1 NC_011761.1 1578510 1580033 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(1578510..1580033) Acidithiobacillus ferrooxidans ATCC 23270 7135640 YP_002426234.1 CDS ppsA NC_011761.1 1580030 1582441 R identified by match to protein family HMM PF00391; match to protein family HMM PF01326; match to protein family HMM PF02896; match to protein family HMM TIGR01418; phosphoenolpyruvate synthase complement(1580030..1582441) Acidithiobacillus ferrooxidans ATCC 23270 7134989 YP_002426235.1 CDS AFE_1817 NC_011761.1 1582536 1583498 R identified by match to protein family HMM PF00685; sulfotransferase domain-containing protein complement(1582536..1583498) Acidithiobacillus ferrooxidans ATCC 23270 7135003 YP_002426236.1 CDS AFE_1818 NC_011761.1 1583510 1584334 R identified by match to protein family HMM PF03330; match to protein family HMM PF05036; match to protein family HMM TIGR00413; rare lipoprotein A complement(1583510..1584334) Acidithiobacillus ferrooxidans ATCC 23270 7134625 YP_002426237.1 CDS dapE NC_011761.1 1584324 1585472 R dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase complement(1584324..1585472) Acidithiobacillus ferrooxidans ATCC 23270 7135772 YP_002426238.1 CDS dapD NC_011761.1 1585484 1586308 R identified by similarity to SP:P03948; match to protein family HMM TIGR00965; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase complement(1585484..1586308) Acidithiobacillus ferrooxidans ATCC 23270 7136659 YP_002426239.1 CDS AFE_1821 NC_011761.1 1586322 1587542 R identified by match to protein family HMM PF00155; match to protein family HMM TIGR03538; class I and II aminotransferase complement(1586322..1587542) Acidithiobacillus ferrooxidans ATCC 23270 7135708 YP_002426240.1 CDS AFE_1822 NC_011761.1 1587526 1587909 D identified by glimmer; putative; hypothetical protein 1587526..1587909 Acidithiobacillus ferrooxidans ATCC 23270 7137157 YP_002426241.1 CDS AFE_1824 NC_011761.1 1587884 1588633 D hypothetical protein 1587884..1588633 Acidithiobacillus ferrooxidans ATCC 23270 7137067 YP_002426242.1 CDS gph-1 NC_011761.1 1588595 1589269 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; phosphoglycolate phosphatase complement(1588595..1589269) Acidithiobacillus ferrooxidans ATCC 23270 7134158 YP_002426243.1 CDS ubiG NC_011761.1 1589262 1589969 R identified by similarity to SP:P17993; match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242; match to protein family HMM TIGR01983; 3-demethylubiquinone-9 3-methyltransferase complement(1589262..1589969) Acidithiobacillus ferrooxidans ATCC 23270 7134018 YP_002426244.1 CDS AFE_1826 NC_011761.1 1589966 1591291 R identified by match to protein family HMM PF01979; match to protein family HMM PF07969; amidohydrolase family protein complement(1589966..1591291) Acidithiobacillus ferrooxidans ATCC 23270 7135794 YP_002426245.1 CDS AFE_1827 NC_011761.1 1591371 1592597 R identified by similarity to SP:P41052; membrane-bound lytic murein transglycosylase B complement(1591371..1592597) Acidithiobacillus ferrooxidans ATCC 23270 7135493 YP_002426246.1 CDS AFE_1828 NC_011761.1 1592594 1593160 R identified by match to protein family HMM PF00877; lipoprotein, NLP/P60 family complement(1592594..1593160) Acidithiobacillus ferrooxidans ATCC 23270 7134387 YP_002426247.1 CDS AFE_1830 NC_011761.1 1593921 1594574 R identified by similarity to GB:AAD17960.1; match to protein family HMM PF05494; toluene tolerance protein complement(1593921..1594574) Acidithiobacillus ferrooxidans ATCC 23270 7135855 YP_002426248.1 CDS AFE_1831 NC_011761.1 1594606 1595148 R identified by glimmer; putative; hypothetical protein complement(1594606..1595148) Acidithiobacillus ferrooxidans ATCC 23270 7136585 YP_002426249.1 CDS AFE_1832 NC_011761.1 1595176 1595958 R identified by glimmer; putative; hypothetical protein complement(1595176..1595958) Acidithiobacillus ferrooxidans ATCC 23270 7135087 YP_002426250.1 CDS AFE_1833 NC_011761.1 1595980 1596930 R identified by match to protein family HMM PF00140; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02937; RNA polymerase sigm-70 factor family complement(1595980..1596930) Acidithiobacillus ferrooxidans ATCC 23270 7136582 YP_002426251.1 CDS AFE_1834 NC_011761.1 1596952 1597308 R identified by glimmer; putative; hypothetical protein complement(1596952..1597308) Acidithiobacillus ferrooxidans ATCC 23270 7135752 YP_002426252.1 CDS AFE_1835 NC_011761.1 1597433 1597669 D identified by glimmer; putative; hypothetical protein 1597433..1597669 Acidithiobacillus ferrooxidans ATCC 23270 7134563 YP_002426253.1 CDS AFE_1836 NC_011761.1 1597950 1598387 R identified by glimmer; putative; hypothetical protein complement(1597950..1598387) Acidithiobacillus ferrooxidans ATCC 23270 7137000 YP_002426254.1 CDS AFE_1837 NC_011761.1 1598310 1598579 D identified by glimmer; putative; hypothetical protein 1598310..1598579 Acidithiobacillus ferrooxidans ATCC 23270 7136168 YP_002426255.1 CDS AFE_1839 NC_011761.1 1598793 1599209 D identified by similarity to PIR:C82434; hypothetical protein 1598793..1599209 Acidithiobacillus ferrooxidans ATCC 23270 7136543 YP_002426256.1 CDS AFE_1838 NC_011761.1 1599183 1599374 R identified by glimmer; putative; hypothetical protein complement(1599183..1599374) Acidithiobacillus ferrooxidans ATCC 23270 7134686 YP_002426257.1 CDS AFE_1841 NC_011761.1 1600734 1600940 D identified by glimmer; putative; hypothetical protein 1600734..1600940 Acidithiobacillus ferrooxidans ATCC 23270 7136726 YP_002426258.1 CDS tkt-1 NC_011761.1 1601311 1603341 D identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232; transketolase 1601311..1603341 Acidithiobacillus ferrooxidans ATCC 23270 7136307 YP_002426259.1 CDS AFE_1844 NC_011761.1 1603524 1604144 D identified by similarity to GB:AAC80173.1; match to protein family HMM PF00037; match to protein family HMM PF09313; ferredoxin 1603524..1604144 Acidithiobacillus ferrooxidans ATCC 23270 7136360 YP_002426260.1 CDS AFE_1845 NC_011761.1 1604154 1604393 D identified by similarity to GB:CAE32970.1; hypothetical protein 1604154..1604393 Acidithiobacillus ferrooxidans ATCC 23270 7137093 YP_002426261.1 CDS AFE_1847 NC_011761.1 1604425 1605513 D identified by match to protein family HMM PF03595; C4-dicarboxylate transporter/malic acid transport protein 1604425..1605513 Acidithiobacillus ferrooxidans ATCC 23270 7134295 YP_002426262.1 CDS AFE_1846 NC_011761.1 1605469 1605729 R identified by glimmer; putative; hypothetical protein complement(1605469..1605729) Acidithiobacillus ferrooxidans ATCC 23270 7134422 YP_002426263.1 CDS AFE_1849 NC_011761.1 1605685 1605798 D identified by glimmer; putative; hypothetical protein 1605685..1605798 Acidithiobacillus ferrooxidans ATCC 23270 7136641 YP_002426264.1 CDS AFE_1848 NC_011761.1 1605780 1606748 R identified by similarity to SP:P37878; match to protein family HMM PF00730; base excision repair protein, HhH-GPD family complement(1605780..1606748) Acidithiobacillus ferrooxidans ATCC 23270 7137309 YP_002426265.1 CDS AFE_1850 NC_011761.1 1606749 1606982 R identified by similarity to GB:AAP04750.1; hypothetical protein complement(1606749..1606982) Acidithiobacillus ferrooxidans ATCC 23270 7135340 YP_002426266.1 CDS AFE_1851 NC_011761.1 1607296 1607940 R identified by match to protein family HMM PF00535; glycosyl transferase family protein complement(1607296..1607940) Acidithiobacillus ferrooxidans ATCC 23270 7134118 YP_002426267.1 CDS AFE_1852 NC_011761.1 1608116 1608334 R identified by glimmer; putative; hypothetical protein complement(1608116..1608334) Acidithiobacillus ferrooxidans ATCC 23270 7136200 YP_002426268.1 CDS AFE_1853 NC_011761.1 1608344 1608541 R identified by glimmer; putative; hypothetical protein complement(1608344..1608541) Acidithiobacillus ferrooxidans ATCC 23270 7136542 YP_002426269.1 CDS AFE_1854 NC_011761.1 1608650 1609906 R identified by match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(1608650..1609906) Acidithiobacillus ferrooxidans ATCC 23270 7136677 YP_002426270.1 CDS AFE_1855 NC_011761.1 1609899 1610996 R identified by match to protein family HMM PF07690; hypothetical protein complement(1609899..1610996) Acidithiobacillus ferrooxidans ATCC 23270 7136518 YP_002426271.1 CDS AFE_1856 NC_011761.1 1611053 1612561 R identified by similarity to GB:AAN30934.1; match to protein family HMM PF00732; match to protein family HMM PF01266; dehydrogenase complement(1611053..1612561) Acidithiobacillus ferrooxidans ATCC 23270 7136781 YP_002426272.1 CDS AFE_1857 NC_011761.1 1612575 1613360 R identified by similarity to SP:P39482; match to protein family HMM PF00106; match to protein family HMM PF08659; glucose 1-dehydrogenase complement(1612575..1613360) Acidithiobacillus ferrooxidans ATCC 23270 7136898 YP_002426273.1 CDS AFE_1858 NC_011761.1 1613357 1613899 R identified by glimmer; putative; hypothetical protein complement(1613357..1613899) Acidithiobacillus ferrooxidans ATCC 23270 7136998 YP_002426274.1 CDS AFE_1859 NC_011761.1 1613946 1614134 R identified by glimmer; putative; hypothetical protein complement(1613946..1614134) Acidithiobacillus ferrooxidans ATCC 23270 7134500 YP_002426275.1 CDS phhB NC_011761.1 1614393 1614722 D 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase 1614393..1614722 Acidithiobacillus ferrooxidans ATCC 23270 7136376 YP_002426276.1 CDS AFE_1860 NC_011761.1 1614644 1615123 R identified by glimmer; putative; hypothetical protein complement(1614644..1615123) Acidithiobacillus ferrooxidans ATCC 23270 7136079 YP_002426277.1 CDS AFE_1862 NC_011761.1 1615277 1615501 D identified by match to protein family HMM PF00403; heavy metal-binding protein 1615277..1615501 Acidithiobacillus ferrooxidans ATCC 23270 7136907 YP_002426278.1 CDS AFE_1863 NC_011761.1 1615611 1615721 D identified by glimmer; putative; hypothetical protein 1615611..1615721 Acidithiobacillus ferrooxidans ATCC 23270 7134604 YP_002426279.1 CDS AFE_1864 NC_011761.1 1615762 1615953 D identified by glimmer; putative; hypothetical protein 1615762..1615953 Acidithiobacillus ferrooxidans ATCC 23270 7134171 YP_002426280.1 CDS AFE_1865 NC_011761.1 1616064 1616357 D identified by glimmer; putative; hypothetical protein 1616064..1616357 Acidithiobacillus ferrooxidans ATCC 23270 7134434 YP_002426281.1 CDS AFE_1867 NC_011761.1 1616979 1617434 R identified by glimmer; putative; hypothetical protein complement(1616979..1617434) Acidithiobacillus ferrooxidans ATCC 23270 7134294 YP_002426282.1 CDS lexA NC_011761.1 1617594 1618211 D identified by similarity to SP:P03033; match to protein family HMM PF00717; match to protein family HMM PF01726; match to protein family HMM TIGR00498; LexA repressor 1617594..1618211 Acidithiobacillus ferrooxidans ATCC 23270 7136581 YP_002426283.1 CDS AFE_1869 NC_011761.1 1618208 1618852 D identified by similarity to SP:P08845; cell division inhibitor 1618208..1618852 Acidithiobacillus ferrooxidans ATCC 23270 7135902 YP_002426284.1 CDS AFE_1870 NC_011761.1 1618949 1620271 D identified by similarity to GB:AAM40399.1; hypothetical protein 1618949..1620271 Acidithiobacillus ferrooxidans ATCC 23270 7137007 YP_002426285.1 CDS AFE_1871 NC_011761.1 1620264 1623311 D identified by match to protein family HMM PF01336; match to protein family HMM PF07733; match to protein family HMM TIGR00594; DNA polymerase III subunit alpha 1620264..1623311 Acidithiobacillus ferrooxidans ATCC 23270 7135599 YP_002426286.1 CDS AFE_1872 NC_011761.1 1623552 1624319 D identified by similarity to SP:P77202; thiol:disulfide interchange protein 1623552..1624319 Acidithiobacillus ferrooxidans ATCC 23270 7135459 YP_002426287.1 CDS pepN NC_011761.1 1624316 1626943 D identified by similarity to SP:P04825; match to protein family HMM PF01433; match to protein family HMM TIGR02414; aminopeptidase N 1624316..1626943 Acidithiobacillus ferrooxidans ATCC 23270 7137158 YP_002426288.1 CDS AFE_1874 NC_011761.1 1626985 1628454 R identified by match to protein family HMM PF01928; adenylate cyclase complement(1626985..1628454) Acidithiobacillus ferrooxidans ATCC 23270 7136712 YP_002426289.1 CDS AFE_1875 NC_011761.1 1628438 1629076 R identified by similarity to SP:P07175; ParA-like protein complement(1628438..1629076) Acidithiobacillus ferrooxidans ATCC 23270 7137180 YP_002426290.1 CDS ppk NC_011761.1 1629089 1631194 R identified by similarity to SP:Q9S646; match to protein family HMM PF01816; match to protein family HMM PF02503; polyphosphate kinase complement(1629089..1631194) Acidithiobacillus ferrooxidans ATCC 23270 7137252 YP_002426291.1 CDS folD NC_011761.1 1631187 1632053 R identified by similarity to SP:P24186; match to protein family HMM PF00763; match to protein family HMM PF02882; methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase complement(1631187..1632053) Acidithiobacillus ferrooxidans ATCC 23270 7134023 YP_002426292.1 CDS AFE_1878 NC_011761.1 1632288 1635368 R identified by match to protein family HMM PF00873; transporter AcrB/AcrD/AcrF family complement(1632288..1635368) Acidithiobacillus ferrooxidans ATCC 23270 7137296 YP_002426293.1 CDS AFE_1879 NC_011761.1 1635380 1636471 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(1635380..1636471) Acidithiobacillus ferrooxidans ATCC 23270 7134640 YP_002426294.1 CDS AFE_1880 NC_011761.1 1636515 1638062 R identified by match to protein family HMM PF02321; match to protein family HMM TIGR01845; NodT family RND efflux system outer membrane lipoprotein complement(1636515..1638062) Acidithiobacillus ferrooxidans ATCC 23270 7135288 YP_002426295.1 CDS AFE_1881 NC_011761.1 1638285 1639073 D identified by glimmer; putative; hypothetical protein 1638285..1639073 Acidithiobacillus ferrooxidans ATCC 23270 7135119 YP_002426296.1 CDS maf-2 NC_011761.1 1639140 1639718 R identified by similarity to SP:Q02169; match to protein family HMM PF02545; match to protein family HMM TIGR00172; maf protein complement(1639140..1639718) Acidithiobacillus ferrooxidans ATCC 23270 7135803 YP_002426297.1 CDS ppc NC_011761.1 1639731 1642520 R identified by match to protein family HMM PF00311; phosphoenolpyruvate carboxylase complement(1639731..1642520) Acidithiobacillus ferrooxidans ATCC 23270 7135878 YP_002426298.1 CDS hfq NC_011761.1 1642855 1643121 D identified by similarity to SP:P25521; match to protein family HMM PF01423; match to protein family HMM TIGR02383; RNA chaperone Hfq 1642855..1643121 Acidithiobacillus ferrooxidans ATCC 23270 7135117 YP_002426299.1 CDS hflX NC_011761.1 1643145 1644443 D identified by similarity to SP:P25519; match to protein family HMM PF01926; match to protein family HMM TIGR03156; GTP-binding protein HflX 1643145..1644443 Acidithiobacillus ferrooxidans ATCC 23270 7135107 YP_002426300.1 CDS hflK NC_011761.1 1644458 1645651 D identified by similarity to SP:P25662; match to protein family HMM PF01145; match to protein family HMM TIGR01933; hflK protein 1644458..1645651 Acidithiobacillus ferrooxidans ATCC 23270 7134098 YP_002426301.1 CDS hflC NC_011761.1 1645648 1646520 D identified by similarity to SP:P25661; match to protein family HMM PF01145; match to protein family HMM TIGR01932; hflC protein 1645648..1646520 Acidithiobacillus ferrooxidans ATCC 23270 7136742 YP_002426302.1 CDS hisZ NC_011761.1 1646517 1647719 D identified by similarity to SP:O34459; similarity to SP:Q55267; match to protein family HMM PF00587; ATP phosphoribosyltransferase regulatory subunit 1646517..1647719 Acidithiobacillus ferrooxidans ATCC 23270 7135214 YP_002426303.1 CDS purA NC_011761.1 1647762 1649057 D identified by similarity to SP:P12283; match to protein family HMM PF00709; match to protein family HMM TIGR00184; adenylosuccinate synthetase 1647762..1649057 Acidithiobacillus ferrooxidans ATCC 23270 7135567 YP_002426304.1 CDS vacB NC_011761.1 1649232 1651472 D identified by similarity to SP:P21499; match to protein family HMM PF00575; match to protein family HMM PF00773; match to protein family HMM PF08206; match to protein family HMM PF08461; match to protein family HMM TIGR00358; match to protein family HMM TIGR02063; ribonuclease R 1649232..1651472 Acidithiobacillus ferrooxidans ATCC 23270 7136020 YP_002426305.1 CDS AFE_1892 NC_011761.1 1651490 1652275 R identified by similarity to PIR:E83627; match to protein family HMM PF03976; hypothetical protein complement(1651490..1652275) Acidithiobacillus ferrooxidans ATCC 23270 7135593 YP_002426306.1 CDS AFE_1893 NC_011761.1 1652310 1653698 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(1652310..1653698) Acidithiobacillus ferrooxidans ATCC 23270 7135452 YP_002426307.1 CDS AFE_1894 NC_011761.1 1653800 1654552 R identified by match to protein family HMM PF00994; hypothetical protein complement(1653800..1654552) Acidithiobacillus ferrooxidans ATCC 23270 7134990 YP_002426308.1 CDS AFE_1895 NC_011761.1 1654828 1655856 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISAfe1, transposase complement(1654828..1655856) Acidithiobacillus ferrooxidans ATCC 23270 7134512 YP_002426309.1 CDS purN NC_011761.1 1655979 1656638 R identified by match to protein family HMM PF00551; match to protein family HMM TIGR00639; phosphoribosylglycinamide formyltransferase complement(1655979..1656638) Acidithiobacillus ferrooxidans ATCC 23270 7136554 YP_002426310.1 CDS purM NC_011761.1 1656631 1657668 R identified by similarity to SP:P08178; match to protein family HMM PF00586; match to protein family HMM PF02769; match to protein family HMM TIGR00878; phosphoribosylformylglycinamidine cyclo-ligase complement(1656631..1657668) Acidithiobacillus ferrooxidans ATCC 23270 7136569 YP_002426311.1 CDS AFE_1899 NC_011761.1 1657670 1657834 D identified by glimmer; putative; hypothetical protein 1657670..1657834 Acidithiobacillus ferrooxidans ATCC 23270 7134837 YP_002426312.1 CDS sod NC_011761.1 1657813 1658430 R identified by similarity to SP:Q03300; match to protein family HMM PF02777; superoxide dismutase complement(1657813..1658430) Acidithiobacillus ferrooxidans ATCC 23270 7135419 YP_002426313.1 CDS AFE_1900 NC_011761.1 1658587 1659135 D identified by match to protein family HMM PF01066; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 1658587..1659135 Acidithiobacillus ferrooxidans ATCC 23270 7134959 YP_002426314.1 CDS AFE_1901 NC_011761.1 1659135 1659845 D identified by match to protein family HMM PF00308; hypothetical protein 1659135..1659845 Acidithiobacillus ferrooxidans ATCC 23270 7135538 YP_002426315.1 CDS yihY NC_011761.1 1659938 1660726 D identified by match to protein family HMM PF03631; match to protein family HMM TIGR00765; YihY family protein 1659938..1660726 Acidithiobacillus ferrooxidans ATCC 23270 7134763 YP_002426316.1 CDS AFE_1903 NC_011761.1 1660821 1661282 D identified by glimmer; putative; hypothetical protein 1660821..1661282 Acidithiobacillus ferrooxidans ATCC 23270 7135456 YP_002426317.1 CDS rpmF NC_011761.1 1661322 1661507 D some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 1661322..1661507 Acidithiobacillus ferrooxidans ATCC 23270 7135646 YP_002426318.1 CDS plsX NC_011761.1 1661545 1662570 D identified by match to protein family HMM PF02504; match to protein family HMM TIGR00182; fatty acid/phospholipid synthesis protein PlsX 1661545..1662570 Acidithiobacillus ferrooxidans ATCC 23270 7136846 YP_002426319.1 CDS fabH NC_011761.1 1662567 1663511 D identified by similarity to SP:P24249; match to protein family HMM PF08541; match to protein family HMM PF08545; match to protein family HMM TIGR00747; 3-oxoacyl-(acyl-carrier-protein) synthase III 1662567..1663511 Acidithiobacillus ferrooxidans ATCC 23270 7134701 YP_002426320.1 CDS fabD NC_011761.1 1663550 1664485 D identified by match to protein family HMM PF00698; match to protein family HMM TIGR00128; malonyl CoA-acyl carrier protein transacylase 1663550..1664485 Acidithiobacillus ferrooxidans ATCC 23270 7134253 YP_002426321.1 CDS fabG NC_011761.1 1664485 1665234 D identified by match to protein family HMM PF00106; match to protein family HMM PF08659; match to protein family HMM TIGR01830; 3-oxoacyl-(acyl-carrier-protein) reductase 1664485..1665234 Acidithiobacillus ferrooxidans ATCC 23270 7136340 YP_002426322.1 CDS acpP NC_011761.1 1665319 1665567 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1665319..1665567 Acidithiobacillus ferrooxidans ATCC 23270 7134938 YP_002426323.1 CDS fabF NC_011761.1 1665604 1666845 D identified by similarity to SP:P39435; match to protein family HMM PF00109; match to protein family HMM PF02801; match to protein family HMM TIGR03150; 3-oxoacyl-(acyl-carrier-protein) synthase II 1665604..1666845 Acidithiobacillus ferrooxidans ATCC 23270 7137274 YP_002426324.1 CDS AFE_1911 NC_011761.1 1666875 1667708 D identified by similarity to SP:P28305; match to protein family HMM PF01063; match to protein family HMM TIGR03461; 4-amino-4-deoxychorismate lyase 1666875..1667708 Acidithiobacillus ferrooxidans ATCC 23270 7135480 YP_002426325.1 CDS tmk NC_011761.1 1668715 1669359 D identified by similarity to SP:P37345; match to protein family HMM PF02223; match to protein family HMM TIGR00041; thymidylate kinase 1668715..1669359 Acidithiobacillus ferrooxidans ATCC 23270 7135729 YP_002426326.1 CDS holB NC_011761.1 1669356 1670357 D identified by similarity to SP:P28631; DNA polymerase III subunit delta' 1669356..1670357 Acidithiobacillus ferrooxidans ATCC 23270 7136405 YP_002426327.1 CDS AFE_1915 NC_011761.1 1670341 1670697 D identified by similarity to PIR:B59241; match to protein family HMM PF07238; type IV pilus assembly protein PilZ 1670341..1670697 Acidithiobacillus ferrooxidans ATCC 23270 7137015 YP_002426328.1 CDS dnaX NC_011761.1 1671047 1672765 D The gamma subunit of DNA polymerase III is a product of early translation termination of this gene caused by ribosomal slippage; identified by similarity to SP:P06710; match to protein family HMM PF00004; match to protein family HMM TIGR02397; DNA polymerase III subunits gamma and tau 1671047..1672765 Acidithiobacillus ferrooxidans ATCC 23270 7134951 YP_002426329.1 CDS AFE_1920 NC_011761.1 1672785 1673108 D identified by match to protein family HMM PF02575; match to protein family HMM TIGR00103; hypothetical protein 1672785..1673108 Acidithiobacillus ferrooxidans ATCC 23270 7136513 YP_002426330.1 CDS recR NC_011761.1 1673115 1673714 D involved in a recombinational process of DNA repair, independent of the recBC complex; recombination protein RecR 1673115..1673714 Acidithiobacillus ferrooxidans ATCC 23270 7134374 YP_002426331.1 CDS amtB NC_011761.1 1673774 1674991 D identified by match to protein family HMM PF00909; ammonium transporter family protein 1673774..1674991 Acidithiobacillus ferrooxidans ATCC 23270 7136739 YP_002426332.1 CDS AFE_1923 NC_011761.1 1674994 1675845 D identified by match to protein family HMM PF01256; match to protein family HMM TIGR00196; hypothetical protein 1674994..1675845 Acidithiobacillus ferrooxidans ATCC 23270 7135771 YP_002426333.1 CDS bioA NC_011761.1 1675832 1677181 D identified by similarity to SP:P53555; match to protein family HMM PF00202; match to protein family HMM TIGR00508; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1675832..1677181 Acidithiobacillus ferrooxidans ATCC 23270 7136565 YP_002426334.1 CDS AFE_1925 NC_011761.1 1677181 1677636 D identified by match to protein family HMM PF00571; hypothetical protein 1677181..1677636 Acidithiobacillus ferrooxidans ATCC 23270 7137147 YP_002426335.1 CDS AFE_1926 NC_011761.1 1677649 1678134 D identified by match to protein family HMM PF02367; match to protein family HMM TIGR00150; hypothetical protein 1677649..1678134 Acidithiobacillus ferrooxidans ATCC 23270 7134164 YP_002426336.1 CDS mutL NC_011761.1 1678124 1679911 D identified by similarity to SP:P23367; match to protein family HMM PF01119; match to protein family HMM PF02518; match to protein family HMM PF08676; match to protein family HMM TIGR00585; mismatch repair protein MutL 1678124..1679911 Acidithiobacillus ferrooxidans ATCC 23270 7134221 YP_002426337.1 CDS miaA NC_011761.1 1679836 1680855 D identified by similarity to SP:P16384; match to protein family HMM PF01715; match to protein family HMM TIGR00174; tRNA delta(2)-isopentenylpyrophosphate transferase 1679836..1680855 Acidithiobacillus ferrooxidans ATCC 23270 7135957 YP_002426338.1 CDS ndk NC_011761.1 1681015 1681440 D catalyzes the formation of nucleoside triphosphate from ATP and nucleoside diphosphate; nucleoside diphosphate kinase 1681015..1681440 Acidithiobacillus ferrooxidans ATCC 23270 7135633 YP_002426339.1 CDS AFE_1930 NC_011761.1 1681444 1682532 D identified by match to protein family HMM PF04055; match to protein family HMM TIGR00048; radical SAM enzyme, Cfr family 1681444..1682532 Acidithiobacillus ferrooxidans ATCC 23270 7136720 YP_002426340.1 CDS pilF NC_011761.1 1682625 1683374 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM TIGR02521; type IV pilus biogenesis/stability protein PilW 1682625..1683374 Acidithiobacillus ferrooxidans ATCC 23270 7136990 YP_002426341.1 CDS AFE_1932 NC_011761.1 1683392 1684366 D identified by similarity to GB:AAO54954.1; hypothetical protein 1683392..1684366 Acidithiobacillus ferrooxidans ATCC 23270 7136473 YP_002426342.1 CDS ispG NC_011761.1 1684356 1685456 D identified by similarity to SP:P27433; match to protein family HMM PF04551; match to protein family HMM TIGR00612; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 1684356..1685456 Acidithiobacillus ferrooxidans ATCC 23270 7134993 YP_002426343.1 CDS hisS NC_011761.1 1685492 1686811 D identified by similarity to SP:P04804; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM TIGR00442; histidyl-tRNA synthetase 1685492..1686811 Acidithiobacillus ferrooxidans ATCC 23270 7134567 YP_002426344.1 CDS AFE_1935 NC_011761.1 1686808 1687419 D identified by similarity to GB:AAQ61198.1; hypothetical protein 1686808..1687419 Acidithiobacillus ferrooxidans ATCC 23270 7136679 YP_002426345.1 CDS AFE_1936 NC_011761.1 1687416 1688603 D identified by match to protein family HMM PF01011; match to protein family HMM TIGR03300; PQQ enzyme repeat domain-containing protein 1687416..1688603 Acidithiobacillus ferrooxidans ATCC 23270 7136188 YP_002426346.1 CDS engA NC_011761.1 1688615 1689964 D EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA 1688615..1689964 Acidithiobacillus ferrooxidans ATCC 23270 7134999 YP_002426347.1 CDS AFE_1938 NC_011761.1 1689965 1690360 D identified by glimmer; putative; hypothetical protein 1689965..1690360 Acidithiobacillus ferrooxidans ATCC 23270 7136364 YP_002426348.1 CDS pstS-1 NC_011761.1 1690555 1691631 D identified by similarity to SP:P06128; match to protein family HMM PF01547; match to protein family HMM TIGR00975; phosphate ABC transporter substrate-binding protein 1690555..1691631 Acidithiobacillus ferrooxidans ATCC 23270 7136519 YP_002426349.1 CDS pstC_2 NC_011761.1 1691756 1692712 D identified by similarity to SP:P07653; match to protein family HMM PF00528; match to protein family HMM TIGR02138; phosphate ABC transporter permease 1691756..1692712 Acidithiobacillus ferrooxidans ATCC 23270 7135875 YP_002426350.1 CDS pstC_1 NC_011761.1 1692712 1693623 D identified by match to protein family HMM PF00528; match to protein family HMM TIGR00974; phosphate ABC transporter permease 1692712..1693623 Acidithiobacillus ferrooxidans ATCC 23270 7135408 YP_002426351.1 CDS AFE_1942 NC_011761.1 1693644 1694408 R identified by glimmer; putative; hypothetical protein complement(1693644..1694408) Acidithiobacillus ferrooxidans ATCC 23270 7135161 YP_002426352.1 CDS AFE_1943 NC_011761.1 1694816 1695493 D identified by similarity to SP:P77202; dsbG domain-containing protein 1694816..1695493 Acidithiobacillus ferrooxidans ATCC 23270 7136557 YP_002426353.1 CDS AFE_1944 NC_011761.1 1695505 1695621 D identified by glimmer; putative; hypothetical protein 1695505..1695621 Acidithiobacillus ferrooxidans ATCC 23270 7134901 YP_002426354.1 CDS AFE_1945 NC_011761.1 1695634 1696392 D identified by match to protein family HMM PF01925; hypothetical protein 1695634..1696392 Acidithiobacillus ferrooxidans ATCC 23270 7137197 YP_002426355.1 CDS AFE_1947 NC_011761.1 1696671 1699781 R identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; CzcA family heavy metal efflux pump complement(1696671..1699781) Acidithiobacillus ferrooxidans ATCC 23270 7135849 YP_002426356.1 CDS AFE_1948 NC_011761.1 1699774 1701093 R identified by similarity to SP:P77239; match to protein family HMM TIGR01730; heavy metal efflux transporter MFP subunit complement(1699774..1701093) Acidithiobacillus ferrooxidans ATCC 23270 7134278 YP_002426357.1 CDS AFE_1949 NC_011761.1 1701090 1702373 R identified by similarity to SP:P11092; match to protein family HMM PF02321; outer membrane heavy metal efflux protein complement(1701090..1702373) Acidithiobacillus ferrooxidans ATCC 23270 7134046 YP_002426358.1 CDS AFE_1950 NC_011761.1 1702374 1702610 D identified by glimmer; putative; hypothetical protein 1702374..1702610 Acidithiobacillus ferrooxidans ATCC 23270 7135270 YP_002426359.1 CDS AFE_1951 NC_011761.1 1703061 1703636 R identified by match to protein family HMM PF01161; match to protein family HMM TIGR00481; hypothetical protein complement(1703061..1703636) Acidithiobacillus ferrooxidans ATCC 23270 7136662 YP_002426360.1 CDS AFE_1952 NC_011761.1 1704354 1705025 D identified by similarity to GB:AAM03868.1; hypothetical protein 1704354..1705025 Acidithiobacillus ferrooxidans ATCC 23270 7136504 YP_002426361.1 CDS AFE_1953 NC_011761.1 1705240 1705455 D identified by similarity to SP:P00208; match to protein family HMM PF00037; ferredoxin 1705240..1705455 Acidithiobacillus ferrooxidans ATCC 23270 7135495 YP_002426362.1 CDS AFE_1955 NC_011761.1 1705635 1706030 R identified by match to protein family HMM PF01475; Fur family transcriptional regulator complement(1705635..1706030) Acidithiobacillus ferrooxidans ATCC 23270 7136027 YP_002426363.1 CDS AFE_1956 NC_011761.1 1706127 1707218 R identified by match to protein family HMM PF01266; oxidoreductase, FAD-binding complement(1706127..1707218) Acidithiobacillus ferrooxidans ATCC 23270 7135032 YP_002426364.1 CDS AFE_1957 NC_011761.1 1707235 1710789 R identified by similarity to GB:AAN68501.1; match to protein family HMM PF04357; hypothetical protein complement(1707235..1710789) Acidithiobacillus ferrooxidans ATCC 23270 7136893 YP_002426365.1 CDS AFE_1958 NC_011761.1 1710786 1712516 R identified by match to protein family HMM PF01103; match to protein family HMM PF07244; OMP85 family outer membrane protein complement(1710786..1712516) Acidithiobacillus ferrooxidans ATCC 23270 7137208 YP_002426366.1 CDS AFE_1959 NC_011761.1 1712823 1713086 R identified by glimmer; putative; hypothetical protein complement(1712823..1713086) Acidithiobacillus ferrooxidans ATCC 23270 7134726 YP_002426367.1 CDS dacB NC_011761.1 1713192 1714694 R identified by similarity to SP:P24228; match to protein family HMM PF02113; match to protein family HMM TIGR00666; D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase complement(1713192..1714694) Acidithiobacillus ferrooxidans ATCC 23270 7136155 YP_002426368.1 CDS AFE_1961 NC_011761.1 1714728 1715966 R identified by similarity to SP:P36670; match to protein family HMM PF07690; AmpG permease complement(1714728..1715966) Acidithiobacillus ferrooxidans ATCC 23270 7135382 YP_002426369.1 CDS AFE_1962 NC_011761.1 1716026 1716301 R identified by match to protein family HMM PF00034; cytochrome c family protein complement(1716026..1716301) Acidithiobacillus ferrooxidans ATCC 23270 7136314 YP_002426370.1 CDS AFE_1963 NC_011761.1 1716593 1716865 D identified by glimmer; putative; hypothetical protein 1716593..1716865 Acidithiobacillus ferrooxidans ATCC 23270 7135812 YP_002426371.1 CDS AFE_1964 NC_011761.1 1717124 1718248 D identified by match to protein family HMM PF00487; fatty acid desaturase 1717124..1718248 Acidithiobacillus ferrooxidans ATCC 23270 7135967 YP_002426372.1 CDS AFE_1965 NC_011761.1 1718307 1718711 R identified by similarity to GB:CAE32024.1; hypothetical protein complement(1718307..1718711) Acidithiobacillus ferrooxidans ATCC 23270 7136469 YP_002426373.1 CDS AFE_1966 NC_011761.1 1718746 1719747 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein complement(1718746..1719747) Acidithiobacillus ferrooxidans ATCC 23270 7137064 YP_002426374.1 CDS rfaD NC_011761.1 1719747 1720736 R identified by similarity to SP:P37420; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM TIGR02197; ADP-L-glycero-D-manno-heptose-6-epimerase complement(1719747..1720736) Acidithiobacillus ferrooxidans ATCC 23270 7136245 YP_002426375.1 CDS AFE_1968 NC_011761.1 1720895 1722880 D identified by match to protein family HMM PF00999; match to protein family HMM PF02080; match to protein family HMM PF02254; match to protein family HMM TIGR01409; potassium-efflux system protein 1720895..1722880 Acidithiobacillus ferrooxidans ATCC 23270 7135024 YP_002426376.1 CDS acs NC_011761.1 1722976 1724943 D identified by similarity to SP:P31638; match to protein family HMM PF00501; match to protein family HMM TIGR02188; acetyl-CoA synthetase 1722976..1724943 Acidithiobacillus ferrooxidans ATCC 23270 7136688 YP_002426377.1 CDS clpB NC_011761.1 1725114 1727714 R identified by similarity to SP:P03815; match to protein family HMM PF00004; match to protein family HMM PF02861; match to protein family HMM PF07724; match to protein family HMM PF07728; clpB protein complement(1725114..1727714) Acidithiobacillus ferrooxidans ATCC 23270 7134360 YP_002426378.1 CDS AFE_1971 NC_011761.1 1727754 1728917 R identified by match to protein family HMM PF07690; transporter complement(1727754..1728917) Acidithiobacillus ferrooxidans ATCC 23270 7135531 YP_002426379.1 CDS aroC NC_011761.1 1728921 1730012 R catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase complement(1728921..1730012) Acidithiobacillus ferrooxidans ATCC 23270 7137075 YP_002426380.1 CDS AFE_1973 NC_011761.1 1730016 1730810 R identified by similarity to GB:CAD85074.1; match to protein family HMM PF02649; match to protein family HMM TIGR00294; hypothetical protein complement(1730016..1730810) Acidithiobacillus ferrooxidans ATCC 23270 7134635 YP_002426381.1 CDS dxs NC_011761.1 1730852 1732726 R identified by similarity to SP:P77488; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00204; 1-deoxy-D-xylulose-5-phosphate synthase complement(1730852..1732726) Acidithiobacillus ferrooxidans ATCC 23270 7134695 YP_002426382.1 CDS ispA NC_011761.1 1732723 1733643 R identified by similarity to SP:P22939; match to protein family HMM PF00348; geranyltranstransferase complement(1732723..1733643) Acidithiobacillus ferrooxidans ATCC 23270 7136128 YP_002426383.1 CDS xseB NC_011761.1 1733640 1733909 R identified by match to protein family HMM PF02609; match to protein family HMM TIGR01280; exodeoxyribonuclease VII small subunit complement(1733640..1733909) Acidithiobacillus ferrooxidans ATCC 23270 7136177 YP_002426384.1 CDS AFE_1977 NC_011761.1 1734020 1735231 D identified by similarity to SP:P52067; match to protein family HMM PF07690; fosmidomycin resistance protein 1734020..1735231 Acidithiobacillus ferrooxidans ATCC 23270 7134496 YP_002426385.1 CDS AFE_1978 NC_011761.1 1735352 1736179 D identified by match to protein family HMM TIGR01352; TonB family protein 1735352..1736179 Acidithiobacillus ferrooxidans ATCC 23270 7137192 YP_002426386.1 CDS AFE_1979 NC_011761.1 1736231 1736602 R identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin complement(1736231..1736602) Acidithiobacillus ferrooxidans ATCC 23270 7135437 YP_002426387.1 CDS xseA NC_011761.1 1736753 1738093 D identified by match to protein family HMM PF01336; match to protein family HMM PF02601; match to protein family HMM TIGR00237; exodeoxyribonuclease VII large subunit 1736753..1738093 Acidithiobacillus ferrooxidans ATCC 23270 7135642 YP_002426388.1 CDS AFE_1981 NC_011761.1 1738201 1739730 R PQQ enzyme repeat protein complement(1738201..1739730) Acidithiobacillus ferrooxidans ATCC 23270 7135045 YP_002426389.1 CDS AFE_1982 NC_011761.1 1739731 1740177 R identified by glimmer; putative; hypothetical protein complement(1739731..1740177) Acidithiobacillus ferrooxidans ATCC 23270 7134586 YP_002426390.1 CDS AFE_1983 NC_011761.1 1740347 1740529 D identified by glimmer; putative; hypothetical protein 1740347..1740529 Acidithiobacillus ferrooxidans ATCC 23270 7134276 YP_002426391.1 CDS AFE_1984 NC_011761.1 1740641 1740811 D identified by glimmer; putative; hypothetical protein 1740641..1740811 Acidithiobacillus ferrooxidans ATCC 23270 7135377 YP_002426392.1 CDS AFE_1985 NC_011761.1 1740920 1741096 D identified by glimmer; putative; hypothetical protein 1740920..1741096 Acidithiobacillus ferrooxidans ATCC 23270 7135141 YP_002426393.1 CDS ppiB NC_011761.1 1741238 1741750 D identified by similarity to SP:P23869; match to protein family HMM PF00160; peptidyl-prolyl cis-trans isomerase B 1741238..1741750 Acidithiobacillus ferrooxidans ATCC 23270 7136115 YP_002426394.1 CDS lpxH NC_011761.1 1741755 1742528 D identified by similarity to SP:Q9I2V0; match to protein family HMM PF00149; match to protein family HMM TIGR01854; UDP-2,3-diacylglucosamine hydrolase 1741755..1742528 Acidithiobacillus ferrooxidans ATCC 23270 7134639 YP_002426395.1 CDS AFE_1988 NC_011761.1 1742560 1745043 D identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation-transporting P-type ATPase 1742560..1745043 Acidithiobacillus ferrooxidans ATCC 23270 7135128 YP_002426396.1 CDS leuA-2 NC_011761.1 1745133 1746836 R identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00970; 2-isopropylmalate synthase complement(1745133..1746836) Acidithiobacillus ferrooxidans ATCC 23270 7134094 YP_002426397.1 CDS AFE_1990 NC_011761.1 1746978 1747463 D identified by match to protein family HMM PF01037; AsnC family transcriptional regulator 1746978..1747463 Acidithiobacillus ferrooxidans ATCC 23270 7134819 YP_002426398.1 CDS AFE_1991 NC_011761.1 1747596 1748882 R identified by similarity to GB:BAC50343.1; match to protein family HMM PF03573; hypothetical protein complement(1747596..1748882) Acidithiobacillus ferrooxidans ATCC 23270 7134184 YP_002426399.1 CDS AFE_1992 NC_011761.1 1748961 1750163 R identified by match to protein family HMM PF03595; C4-dicarboxylate transporter/malic acid transport protein complement(1748961..1750163) Acidithiobacillus ferrooxidans ATCC 23270 7134489 YP_002426400.1 CDS AFE_1993 NC_011761.1 1750286 1751191 D identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator 1750286..1751191 Acidithiobacillus ferrooxidans ATCC 23270 7135673 YP_002426401.1 CDS ribB NC_011761.1 1751389 1752060 R identified by similarity to SP:P24199; match to protein family HMM PF00926; match to protein family HMM TIGR00506; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(1751389..1752060) Acidithiobacillus ferrooxidans ATCC 23270 7134808 YP_002426402.1 CDS AFE_1996 NC_011761.1 1752350 1752502 R identified by glimmer; putative; hypothetical protein complement(1752350..1752502) Acidithiobacillus ferrooxidans ATCC 23270 7135213 YP_002426403.1 CDS AFE_1997 NC_011761.1 1752620 1753333 R identified by match to protein family HMM PF00196; match to protein family HMM PF03472; autoinducer-binding transcriptional regulator complement(1752620..1753333) Acidithiobacillus ferrooxidans ATCC 23270 7135899 YP_002426404.1 CDS AFE_1998 NC_011761.1 1753495 1753926 D identified by glimmer; putative; hypothetical protein 1753495..1753926 Acidithiobacillus ferrooxidans ATCC 23270 7136199 YP_002426405.1 CDS AFE_1999 NC_011761.1 1754010 1754561 D identified by similarity to SP:P12747; match to protein family HMM PF00765; autoinducer synthesis protein 1754010..1754561 Acidithiobacillus ferrooxidans ATCC 23270 7137100 YP_002426406.1 CDS AFE_2000 NC_011761.1 1754753 1754911 D identified by glimmer; putative; hypothetical protein 1754753..1754911 Acidithiobacillus ferrooxidans ATCC 23270 7134703 YP_002426407.1 CDS AFE_2001 NC_011761.1 1754935 1755096 D identified by glimmer; putative; hypothetical protein 1754935..1755096 Acidithiobacillus ferrooxidans ATCC 23270 7136611 YP_002426408.1 CDS AFE_2002 NC_011761.1 1755112 1755453 R identified by similarity to GB:AAP77659.1; match to protein family HMM PF01878; hypothetical protein complement(1755112..1755453) Acidithiobacillus ferrooxidans ATCC 23270 7136103 YP_002426409.1 CDS AFE_2004 NC_011761.1 1756381 1756809 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(1756381..1756809) Acidithiobacillus ferrooxidans ATCC 23270 7136780 YP_002426410.1 CDS AFE_2005 NC_011761.1 1756864 1757550 R identified by similarity to GB:BAC41251.1; match to protein family HMM PF01965; isonitrile hydratase complement(1756864..1757550) Acidithiobacillus ferrooxidans ATCC 23270 7135441 YP_002426411.1 CDS AFE_2006 NC_011761.1 1757547 1758206 R identified by match to protein family HMM PF04299; transcriptional regulator complement(1757547..1758206) Acidithiobacillus ferrooxidans ATCC 23270 7136059 YP_002426412.1 CDS AFE_2007 NC_011761.1 1758220 1758906 R identified by similarity to GB:CAD71376.1; hypothetical protein complement(1758220..1758906) Acidithiobacillus ferrooxidans ATCC 23270 7136715 YP_002426413.1 CDS AFE_2008 NC_011761.1 1758878 1759378 R identified by similarity to GB:AAQ59281.1; hypothetical protein complement(1758878..1759378) Acidithiobacillus ferrooxidans ATCC 23270 7134487 YP_002426414.1 CDS AFE_2009 NC_011761.1 1759466 1759996 R identified by similarity to GB:AAN32872.1; hypothetical protein complement(1759466..1759996) Acidithiobacillus ferrooxidans ATCC 23270 7136527 YP_002426415.1 CDS AFE_2010 NC_011761.1 1760020 1760247 R identified by glimmer; putative; hypothetical protein complement(1760020..1760247) Acidithiobacillus ferrooxidans ATCC 23270 7135066 YP_002426416.1 CDS AFE_2011 NC_011761.1 1760132 1760743 R identified by match to protein family HMM PF00440; TetR family transcriptional regulator complement(1760132..1760743) Acidithiobacillus ferrooxidans ATCC 23270 7135448 YP_002426417.1 CDS AFE_2012 NC_011761.1 1760818 1761174 D identified by similarity to GB:BAC68441.1; hypothetical protein 1760818..1761174 Acidithiobacillus ferrooxidans ATCC 23270 7135738 YP_002426418.1 CDS AFE_2013 NC_011761.1 1761179 1761616 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(1761179..1761616) Acidithiobacillus ferrooxidans ATCC 23270 7136905 YP_002426419.1 CDS AFE_2014 NC_011761.1 1761720 1762199 D identified by match to protein family HMM PF02627; match to protein family HMM TIGR00778; alkylhydroperoxidase 1761720..1762199 Acidithiobacillus ferrooxidans ATCC 23270 7135298 YP_002426420.1 CDS AFE_2015 NC_011761.1 1762196 1762681 D identified by match to protein family HMM PF00583; GNAT family acetyltransferase 1762196..1762681 Acidithiobacillus ferrooxidans ATCC 23270 7135160 YP_002426421.1 CDS AFE_2017 NC_011761.1 1762944 1763678 R identified by match to protein family HMM PF04012; PspA/IM30 family complement(1762944..1763678) Acidithiobacillus ferrooxidans ATCC 23270 7136008 YP_002426422.1 CDS AFE_2018 NC_011761.1 1763718 1764542 R identified by similarity to PIR:C70988; hypothetical protein complement(1763718..1764542) Acidithiobacillus ferrooxidans ATCC 23270 7134831 YP_002426423.1 CDS AFE_2019 NC_011761.1 1764539 1765516 R hypothetical protein complement(1764539..1765516) Acidithiobacillus ferrooxidans ATCC 23270 7136101 YP_002426424.1 CDS AFE_2020 NC_011761.1 1765550 1765960 D identified by glimmer; putative; hypothetical protein 1765550..1765960 Acidithiobacillus ferrooxidans ATCC 23270 7134334 YP_002426425.1 CDS AFE_2021 NC_011761.1 1766064 1768499 R identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase complement(1766064..1768499) Acidithiobacillus ferrooxidans ATCC 23270 7134465 YP_002426426.1 CDS aspC NC_011761.1 1768717 1769898 D identified by similarity to SP:P23034; match to protein family HMM PF00155; aspartate aminotransferase 1768717..1769898 Acidithiobacillus ferrooxidans ATCC 23270 7135267 YP_002426427.1 CDS purT NC_011761.1 1769944 1771128 R identified by similarity to SP:P33221; match to protein family HMM PF01071; match to protein family HMM PF02222; match to protein family HMM TIGR01142; phosphoribosylglycinamide formyltransferase 2 complement(1769944..1771128) Acidithiobacillus ferrooxidans ATCC 23270 7135286 YP_002426428.1 CDS AFE_2024 NC_011761.1 1771228 1772148 D similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase 1771228..1772148 Acidithiobacillus ferrooxidans ATCC 23270 7136650 YP_002426429.1 CDS zwf NC_011761.1 1772149 1773612 D catalyzes the formation of D-glucono-1,5-lactone 6-phosphate from D-glucose 6-phosphate; glucose-6-phosphate 1-dehydrogenase 1772149..1773612 Acidithiobacillus ferrooxidans ATCC 23270 7135798 YP_002426430.1 CDS AFE_2026 NC_011761.1 1773881 1774174 D identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 1773881..1774174 Acidithiobacillus ferrooxidans ATCC 23270 7134513 YP_002426431.1 CDS dusA NC_011761.1 1774177 1775169 R identified by similarity to SP:Q8X5V6; match to protein family HMM PF01207; tRNA-dihydrouridine synthase A complement(1774177..1775169) Acidithiobacillus ferrooxidans ATCC 23270 7136516 YP_002426432.1 CDS parC NC_011761.1 1775207 1777612 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(1775207..1777612) Acidithiobacillus ferrooxidans ATCC 23270 7137133 YP_002426433.1 CDS parE NC_011761.1 1777630 1779600 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(1777630..1779600) Acidithiobacillus ferrooxidans ATCC 23270 7134861 YP_002426434.1 CDS AFE_2030 NC_011761.1 1779649 1779747 D identified by glimmer; putative; hypothetical protein 1779649..1779747 Acidithiobacillus ferrooxidans ATCC 23270 7137114 YP_002426435.1 CDS AFE_2031 NC_011761.1 1779889 1781196 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(1779889..1781196) Acidithiobacillus ferrooxidans ATCC 23270 7134692 YP_002426436.1 CDS AFE_2032 NC_011761.1 1781193 1781855 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(1781193..1781855) Acidithiobacillus ferrooxidans ATCC 23270 7136418 YP_002426437.1 CDS AFE_2033 NC_011761.1 1781933 1782244 R identified by match to protein family HMM PF03413; hypothetical protein complement(1781933..1782244) Acidithiobacillus ferrooxidans ATCC 23270 7136255 YP_002426438.1 CDS AFE_2034 NC_011761.1 1782440 1783516 R identified by similarity to GB:AAM05308.1; hypothetical protein complement(1782440..1783516) Acidithiobacillus ferrooxidans ATCC 23270 7136085 YP_002426439.1 CDS AFE_2035 NC_011761.1 1783559 1786585 R identified by match to protein family HMM PF00873; transporter AcrB/AcrD/AcrF family complement(1783559..1786585) Acidithiobacillus ferrooxidans ATCC 23270 7134407 YP_002426440.1 CDS AFE_2036 NC_011761.1 1786585 1787625 R identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(1786585..1787625) Acidithiobacillus ferrooxidans ATCC 23270 7136950 YP_002426441.1 CDS AFE_2037 NC_011761.1 1787622 1788971 R identified by match to protein family HMM PF02321; outer membrane efflux protein complement(1787622..1788971) Acidithiobacillus ferrooxidans ATCC 23270 7136454 YP_002426442.1 CDS AFE_2038 NC_011761.1 1789245 1789376 R identified by glimmer; putative; hypothetical protein complement(1789245..1789376) Acidithiobacillus ferrooxidans ATCC 23270 7137008 YP_002426443.1 CDS AFE_2039 NC_011761.1 1789506 1789661 R identified by glimmer; putative; hypothetical protein complement(1789506..1789661) Acidithiobacillus ferrooxidans ATCC 23270 7136566 YP_002426444.1 CDS AFE_2040 NC_011761.1 1789693 1792056 R identified by match to protein family HMM PF00593; TonB-dependent receptor complement(1789693..1792056) Acidithiobacillus ferrooxidans ATCC 23270 7134669 YP_002426445.1 CDS AFE_2041 NC_011761.1 1792284 1793237 R hypothetical protein complement(1792284..1793237) Acidithiobacillus ferrooxidans ATCC 23270 7136784 YP_002426446.1 CDS AFE_2042 NC_011761.1 1793273 1793443 R identified by glimmer; putative; hypothetical protein complement(1793273..1793443) Acidithiobacillus ferrooxidans ATCC 23270 7136105 YP_002426447.1 CDS AFE_2043 NC_011761.1 1793364 1796462 R identified by match to protein family HMM PF00873; transporter AcrB/AcrD/AcrF family complement(1793364..1796462) Acidithiobacillus ferrooxidans ATCC 23270 7134112 YP_002426448.1 CDS AFE_2044 NC_011761.1 1796459 1797469 R identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(1796459..1797469) Acidithiobacillus ferrooxidans ATCC 23270 7137284 YP_002426449.1 CDS AFE_2045 NC_011761.1 1797466 1798809 R identified by match to protein family HMM PF02321; outer membrane efflux protein complement(1797466..1798809) Acidithiobacillus ferrooxidans ATCC 23270 7136147 YP_002426450.1 CDS AFE_2046 NC_011761.1 1798806 1798937 R identified by glimmer; putative; hypothetical protein complement(1798806..1798937) Acidithiobacillus ferrooxidans ATCC 23270 7134257 YP_002426451.1 CDS AFE_2048 NC_011761.1 1798914 1799030 D identified by glimmer; putative; hypothetical protein 1798914..1799030 Acidithiobacillus ferrooxidans ATCC 23270 7136799 YP_002426452.1 CDS AFE_2047 NC_011761.1 1799005 1799316 R identified by glimmer; putative; hypothetical protein complement(1799005..1799316) Acidithiobacillus ferrooxidans ATCC 23270 7136063 YP_002426453.1 CDS AFE_2049 NC_011761.1 1799351 1799557 D identified by glimmer; putative; hypothetical protein 1799351..1799557 Acidithiobacillus ferrooxidans ATCC 23270 7136455 YP_002426454.1 CDS AFE_2050 NC_011761.1 1799766 1799963 D identified by glimmer; putative; hypothetical protein 1799766..1799963 Acidithiobacillus ferrooxidans ATCC 23270 7135514 YP_002426455.1 CDS AFE_2051 NC_011761.1 1800280 1800498 R identified by glimmer; putative; hypothetical protein complement(1800280..1800498) Acidithiobacillus ferrooxidans ATCC 23270 7135008 YP_002426456.1 CDS AFE_2052 NC_011761.1 1800608 1801657 D identified by match to protein family HMM PF00892; hypothetical protein 1800608..1801657 Acidithiobacillus ferrooxidans ATCC 23270 7136897 YP_002426457.1 CDS xfp NC_011761.1 1801753 1804200 D identified by similarity to SP:Q9AEM9; match to protein family HMM PF03894; phosphoketolase 1801753..1804200 Acidithiobacillus ferrooxidans ATCC 23270 7134573 YP_002426458.1 CDS AFE_2054 NC_011761.1 1804287 1805069 D hypothetical protein 1804287..1805069 Acidithiobacillus ferrooxidans ATCC 23270 7134234 YP_002426459.1 CDS secF NC_011761.1 1805316 1806329 R identified by similarity to SP:P19674; match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR00966; protein-export membrane protein SecF complement(1805316..1806329) Acidithiobacillus ferrooxidans ATCC 23270 7135851 YP_002426460.1 CDS secD NC_011761.1 1806274 1808058 R identified by similarity to SP:P19673; match to protein family HMM PF02355; match to protein family HMM PF07549; match to protein family HMM TIGR00916; match to protein family HMM TIGR01129; protein-export membrane protein SecD complement(1806274..1808058) Acidithiobacillus ferrooxidans ATCC 23270 7134691 YP_002426461.1 CDS AFE_2058 NC_011761.1 1808070 1808405 R identified by similarity to SP:P19677; match to protein family HMM PF02699; match to protein family HMM TIGR00739; preprotein translocase subunit YajC complement(1808070..1808405) Acidithiobacillus ferrooxidans ATCC 23270 7135705 YP_002426462.1 CDS tgt NC_011761.1 1808446 1809561 R identified by similarity to SP:Q54177; match to protein family HMM PF01702; match to protein family HMM TIGR00430; match to protein family HMM TIGR00449; queuine tRNA-ribosyltransferase complement(1808446..1809561) Acidithiobacillus ferrooxidans ATCC 23270 7135802 YP_002426463.1 CDS queA NC_011761.1 1809558 1810595 R Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase complement(1809558..1810595) Acidithiobacillus ferrooxidans ATCC 23270 7137225 YP_002426464.1 CDS AFE_2061 NC_011761.1 1810604 1811953 R identified by match to protein family HMM PF00571; match to protein family HMM PF01595; match to protein family HMM PF03471; hypothetical protein complement(1810604..1811953) Acidithiobacillus ferrooxidans ATCC 23270 7134474 YP_002426465.1 CDS AFE_2062 NC_011761.1 1811968 1812561 R identified by match to protein family HMM PF00571; hypothetical protein complement(1811968..1812561) Acidithiobacillus ferrooxidans ATCC 23270 7134600 YP_002426466.1 CDS metZ NC_011761.1 1812624 1813838 R identified by match to protein family HMM PF01053; match to protein family HMM PF01212; match to protein family HMM TIGR01325; O-succinylhomoserine sulfhydrylase complement(1812624..1813838) Acidithiobacillus ferrooxidans ATCC 23270 7135947 YP_002426467.1 CDS purF NC_011761.1 1813835 1815262 R identified by similarity to SP:P00497; match to protein family HMM PF00156; match to protein family HMM PF00310; match to protein family HMM TIGR01134; amidophosphoribosyltransferase complement(1813835..1815262) Acidithiobacillus ferrooxidans ATCC 23270 7135828 YP_002426468.1 CDS AFE_2065 NC_011761.1 1815270 1815767 R identified by similarity to SP:P08550; match to protein family HMM PF02674; CvpA family protein complement(1815270..1815767) Acidithiobacillus ferrooxidans ATCC 23270 7134833 YP_002426469.1 CDS folC NC_011761.1 1815764 1817053 R identified by similarity to SP:P08192; match to protein family HMM PF02875; match to protein family HMM PF08245; match to protein family HMM TIGR01499; bifunctional folylpolyglutamate synthase/dihydrofolate synthase complement(1815764..1817053) Acidithiobacillus ferrooxidans ATCC 23270 7135002 YP_002426470.1 CDS accD NC_011761.1 1817082 1817966 R identified by match to protein family HMM TIGR00515; acetyl-CoA carboxylase, carboxyl transferase subunit beta complement(1817082..1817966) Acidithiobacillus ferrooxidans ATCC 23270 7136709 YP_002426471.1 CDS trpA NC_011761.1 1817963 1818781 R catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha complement(1817963..1818781) Acidithiobacillus ferrooxidans ATCC 23270 7137039 YP_002426472.1 CDS trpB NC_011761.1 1818778 1819977 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(1818778..1819977) Acidithiobacillus ferrooxidans ATCC 23270 7134477 YP_002426473.1 CDS trpF NC_011761.1 1819988 1820605 R identified by similarity to SP:Q56320; match to protein family HMM PF00697; N-(5'phosphoribosyl)anthranilate isomerase complement(1819988..1820605) Acidithiobacillus ferrooxidans ATCC 23270 7134282 YP_002426474.1 CDS truA NC_011761.1 1820660 1821475 R identified by similarity to SP:P07649; match to protein family HMM PF01416; match to protein family HMM TIGR00071; tRNA pseudouridine synthase A complement(1820660..1821475) Acidithiobacillus ferrooxidans ATCC 23270 7135060 YP_002426475.1 CDS AFE_2072 NC_011761.1 1821488 1823656 R hypothetical protein complement(1821488..1823656) Acidithiobacillus ferrooxidans ATCC 23270 7135310 YP_002426476.1 CDS AFE_2073 NC_011761.1 1823646 1823741 D identified by glimmer; putative; hypothetical protein 1823646..1823741 Acidithiobacillus ferrooxidans ATCC 23270 7136477 YP_002426477.1 CDS asd NC_011761.1 1823747 1824769 R identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296; aspartate-semialdehyde dehydrogenase complement(1823747..1824769) Acidithiobacillus ferrooxidans ATCC 23270 7136158 YP_002426478.1 CDS leuB NC_011761.1 1824777 1825853 R identified by similarity to SP:Q51375; match to protein family HMM PF00180; match to protein family HMM TIGR00169; 3-isopropylmalate dehydrogenase complement(1824777..1825853) Acidithiobacillus ferrooxidans ATCC 23270 7136735 YP_002426479.1 CDS mobA NC_011761.1 1826012 1826569 D identified by similarity to SP:P32173; match to protein family HMM TIGR02665; molybdopterin-guanine dinucleotide biosynthesis protein MobA 1826012..1826569 Acidithiobacillus ferrooxidans ATCC 23270 7135648 YP_002426480.1 CDS mobB NC_011761.1 1826566 1827060 D identified by match to protein family HMM PF03205; match to protein family HMM TIGR00176; molybdopterin-guanine dinucleotide biosynthesis protein MobB 1826566..1827060 Acidithiobacillus ferrooxidans ATCC 23270 7136639 YP_002426481.1 CDS moeA NC_011761.1 1827063 1828304 D identified by similarity to SP:P12281; match to protein family HMM PF00994; match to protein family HMM PF03453; match to protein family HMM PF03454; match to protein family HMM TIGR00177; molybdopterin biosynthesis MoeA protein 1827063..1828304 Acidithiobacillus ferrooxidans ATCC 23270 7135275 YP_002426482.1 CDS nuc NC_011761.1 1828313 1828954 R identified by similarity to PIR:I79276; endonuclease complement(1828313..1828954) Acidithiobacillus ferrooxidans ATCC 23270 7135047 YP_002426483.1 CDS sppA NC_011761.1 1829044 1830861 R identified by similarity to SP:P08395; match to protein family HMM PF01343; match to protein family HMM TIGR00705; match to protein family HMM TIGR00706; signal peptide peptidase SppA, 67K type complement(1829044..1830861) Acidithiobacillus ferrooxidans ATCC 23270 7135583 YP_002426484.1 CDS AFE_2081 NC_011761.1 1831069 1833978 R identified by match to protein family HMM PF00128; match to protein family HMM TIGR02401; alpha-amylase family protein complement(1831069..1833978) Acidithiobacillus ferrooxidans ATCC 23270 7135678 YP_002426485.1 CDS AFE_2082 NC_011761.1 1833984 1835840 R identified by match to protein family HMM PF00128; match to protein family HMM PF02922; match to protein family HMM TIGR02402; alpha-amylase family protein complement(1833984..1835840) Acidithiobacillus ferrooxidans ATCC 23270 7134650 YP_002426486.1 CDS AFE_2083 NC_011761.1 1835861 1837096 R identified by match to protein family HMM PF00534; group 1 glycosyl transferase complement(1835861..1837096) Acidithiobacillus ferrooxidans ATCC 23270 7135634 YP_002426487.1 CDS AFE_2084 NC_011761.1 1837086 1837778 R identified by similarity to GB:AAL63368.1; hypothetical protein complement(1837086..1837778) Acidithiobacillus ferrooxidans ATCC 23270 7135014 YP_002426488.1 CDS AFE_2085 NC_011761.1 1838097 1838738 R identified by similarity to GB:AAM31475.1; hypothetical protein complement(1838097..1838738) Acidithiobacillus ferrooxidans ATCC 23270 7137063 YP_002426489.1 CDS AFE_2086 NC_011761.1 1838900 1839337 R identified by similarity to GB:AAC44757.1; match to protein family HMM PF00011; heat shock protein, Hsp20 family complement(1838900..1839337) Acidithiobacillus ferrooxidans ATCC 23270 7136448 YP_002426490.1 CDS AFE_2087 NC_011761.1 1839339 1839485 R identified by glimmer; putative; hypothetical protein complement(1839339..1839485) Acidithiobacillus ferrooxidans ATCC 23270 7137128 YP_002426491.1 CDS AFE_2088 NC_011761.1 1839676 1840683 D identified by match to protein family HMM PF08240; match to protein family HMM TIGR02822; zinc-binding alcohol dehydrogenase family protein 1839676..1840683 Acidithiobacillus ferrooxidans ATCC 23270 7134285 YP_002426492.1 CDS AFE_2089 NC_011761.1 1840701 1841462 D identified by glimmer; putative; hypothetical protein 1840701..1841462 Acidithiobacillus ferrooxidans ATCC 23270 7135391 YP_002426493.1 CDS AFE_2090 NC_011761.1 1841785 1842726 D identified by similarity to GB:AAQ61923.1; match to protein family HMM PF01435; M48 family peptidase 1841785..1842726 Acidithiobacillus ferrooxidans ATCC 23270 7136395 YP_002426494.1 CDS AFE_2091 NC_011761.1 1842831 1844360 D identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter 1842831..1844360 Acidithiobacillus ferrooxidans ATCC 23270 7136236 YP_002426495.1 CDS AFE_2092 NC_011761.1 1844427 1844729 D identified by glimmer; putative; hypothetical protein 1844427..1844729 Acidithiobacillus ferrooxidans ATCC 23270 7134063 YP_002426496.1 CDS AFE_2093 NC_011761.1 1844731 1845453 R identified by glimmer; putative; hypothetical protein complement(1844731..1845453) Acidithiobacillus ferrooxidans ATCC 23270 7135930 YP_002426497.1 CDS AFE_2094 NC_011761.1 1845543 1845863 R identified by glimmer; putative; hypothetical protein complement(1845543..1845863) Acidithiobacillus ferrooxidans ATCC 23270 7136450 YP_002426498.1 CDS AFE_2095 NC_011761.1 1845873 1846232 R identified by glimmer; putative; hypothetical protein complement(1845873..1846232) Acidithiobacillus ferrooxidans ATCC 23270 7135605 YP_002426499.1 CDS AFE_2096 NC_011761.1 1847025 1847891 D identified by glimmer; putative; hypothetical protein 1847025..1847891 Acidithiobacillus ferrooxidans ATCC 23270 7136607 YP_002426500.1 CDS AFE_2097 NC_011761.1 1847993 1849297 D identified by glimmer; putative; hypothetical protein 1847993..1849297 Acidithiobacillus ferrooxidans ATCC 23270 7134898 YP_002426501.1 CDS AFE_2098 NC_011761.1 1849319 1849468 R identified by glimmer; putative; hypothetical protein complement(1849319..1849468) Acidithiobacillus ferrooxidans ATCC 23270 7135918 YP_002426502.1 CDS AFE_2099 NC_011761.1 1849651 1849830 D identified by glimmer; putative; hypothetical protein 1849651..1849830 Acidithiobacillus ferrooxidans ATCC 23270 7136999 YP_002426503.1 CDS AFE_2100 NC_011761.1 1850942 1851118 D identified by glimmer; putative; hypothetical protein 1850942..1851118 Acidithiobacillus ferrooxidans ATCC 23270 7134977 YP_002426504.1 CDS AFE_2101 NC_011761.1 1851256 1851498 R identified by glimmer; putative; hypothetical protein complement(1851256..1851498) Acidithiobacillus ferrooxidans ATCC 23270 7136830 YP_002426505.1 CDS AFE_2103 NC_011761.1 1853988 1855082 D identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit 1853988..1855082 Acidithiobacillus ferrooxidans ATCC 23270 7136498 YP_002426506.1 CDS AFE_2104 NC_011761.1 1855079 1858183 D identified by match to protein family HMM PF00873; transporter AcrB/AcrD/AcrF family 1855079..1858183 Acidithiobacillus ferrooxidans ATCC 23270 7135881 YP_002426507.1 CDS AFE_2105 NC_011761.1 1858209 1858928 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 1858209..1858928 Acidithiobacillus ferrooxidans ATCC 23270 7136670 YP_002426508.1 CDS AFE_2106 NC_011761.1 1858921 1859646 D identified by similarity to GB:AAP29240.1; ABC transporter permease 1858921..1859646 Acidithiobacillus ferrooxidans ATCC 23270 7137264 YP_002426509.1 CDS AFE_2107 NC_011761.1 1859689 1860405 D ABC transporter permease 1859689..1860405 Acidithiobacillus ferrooxidans ATCC 23270 7137156 YP_002426510.1 CDS AFE_2108 NC_011761.1 1861032 1861232 R identified by glimmer; putative; hypothetical protein complement(1861032..1861232) Acidithiobacillus ferrooxidans ATCC 23270 7136765 YP_002426511.1 CDS gatB NC_011761.1 1861698 1863134 R identified by match to protein family HMM PF01162; match to protein family HMM PF02637; match to protein family HMM PF02934; match to protein family HMM TIGR00133; glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, B subunit complement(1861698..1863134) Acidithiobacillus ferrooxidans ATCC 23270 7137257 YP_002426512.1 CDS gatA NC_011761.1 1863131 1864603 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(1863131..1864603) Acidithiobacillus ferrooxidans ATCC 23270 7137145 YP_002426513.1 CDS gatC NC_011761.1 1864613 1864900 R identified by match to protein family HMM PF02686; match to protein family HMM TIGR00135; glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, C subunit complement(1864613..1864900) Acidithiobacillus ferrooxidans ATCC 23270 7135980 YP_002426514.1 CDS AFE_2113 NC_011761.1 1864903 1865742 R identified by similarity to SP:P76506; match to protein family HMM PF04333; vacJ lipoprotein complement(1864903..1865742) Acidithiobacillus ferrooxidans ATCC 23270 7134607 YP_002426515.1 CDS AFE_2114 NC_011761.1 1865745 1866404 R identified by match to protein family HMM PF05494; hypothetical protein complement(1865745..1866404) Acidithiobacillus ferrooxidans ATCC 23270 7136104 YP_002426516.1 CDS AFE_2115 NC_011761.1 1866449 1867552 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR03470; radical SAM domain-containing protein complement(1866449..1867552) Acidithiobacillus ferrooxidans ATCC 23270 7134287 YP_002426517.1 CDS AFE_2116 NC_011761.1 1867658 1868500 R identified by glimmer; putative; hypothetical protein complement(1867658..1868500) Acidithiobacillus ferrooxidans ATCC 23270 7134870 YP_002426518.1 CDS AFE_2117 NC_011761.1 1868497 1869513 R identified by match to protein family HMM TIGR00374; match to protein family HMM TIGR03476; hypothetical protein complement(1868497..1869513) Acidithiobacillus ferrooxidans ATCC 23270 7136215 YP_002426519.1 CDS AFE_2118 NC_011761.1 1869515 1872154 R identified by similarity to GB:CAD85670.1; match to protein family HMM TIGR03480; hypothetical protein complement(1869515..1872154) Acidithiobacillus ferrooxidans ATCC 23270 7137014 YP_002426520.1 CDS AFE_2119 NC_011761.1 1872198 1873073 R identified by similarity to SP:Q8DCD5; match to protein family HMM PF04794; match to protein family HMM TIGR03473; hypothetical protein complement(1872198..1873073) Acidithiobacillus ferrooxidans ATCC 23270 7136123 YP_002426521.1 CDS AFE_2120 NC_011761.1 1873075 1874505 R identified by match to protein family HMM PF04055; match to protein family HMM TIGR03471; radical SAM domain-containing protein complement(1873075..1874505) Acidithiobacillus ferrooxidans ATCC 23270 7136156 YP_002426522.1 CDS AFE_2121 NC_011761.1 1874502 1875662 R identified by match to protein family HMM PF00535; match to protein family HMM TIGR03472; glycosyl transferase family protein complement(1874502..1875662) Acidithiobacillus ferrooxidans ATCC 23270 7134469 YP_002426523.1 CDS AFE_2122 NC_011761.1 1875705 1876694 R identified by match to protein family HMM PF00106; match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF04321; match to protein family HMM PF05368; match to protein family HMM PF07993; match to protein family HMM TIGR03466; hypothetical protein complement(1875705..1876694) Acidithiobacillus ferrooxidans ATCC 23270 7136856 YP_002426524.1 CDS AFE_2123 NC_011761.1 1876691 1877404 R identified by similarity to SP:P24247; match to protein family HMM PF01048; match to protein family HMM TIGR03468; MTA/SAH nucleosidase complement(1876691..1877404) Acidithiobacillus ferrooxidans ATCC 23270 7135508 YP_002426525.1 CDS shc NC_011761.1 1877386 1879317 R identified by similarity to SP:P33990; match to protein family HMM PF00432; match to protein family HMM TIGR01507; match to protein family HMM TIGR01787; squalene-hopene cyclase complement(1877386..1879317) Acidithiobacillus ferrooxidans ATCC 23270 7135256 YP_002426526.1 CDS AFE_2125 NC_011761.1 1879314 1880357 R identified by match to protein family HMM PF00494; phytoene/squalene synthetase family protein complement(1879314..1880357) Acidithiobacillus ferrooxidans ATCC 23270 7137173 YP_002426527.1 CDS gpsA NC_011761.1 1880516 1881550 R catalyzes the NAD(P)H-dependent reduction of glycerol 3-phosphate to glycerone phosphate; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase complement(1880516..1881550) Acidithiobacillus ferrooxidans ATCC 23270 7136098 YP_002426528.1 CDS secB NC_011761.1 1881554 1882003 R identified by similarity to SP:P15040; match to protein family HMM PF02556; match to protein family HMM TIGR00809; preprotein translocase, SecB subunit complement(1881554..1882003) Acidithiobacillus ferrooxidans ATCC 23270 7134869 YP_002426529.1 CDS AFE_2129 NC_011761.1 1882734 1883144 R identified by similarity to PIR:B49205; match to protein family HMM PF01850; virulence-associated protein complement(1882734..1883144) Acidithiobacillus ferrooxidans ATCC 23270 7135833 YP_002426530.1 CDS AFE_2130 NC_011761.1 1883141 1883371 R identified by similarity to SP:Q05459; virulence-associated protein complement(1883141..1883371) Acidithiobacillus ferrooxidans ATCC 23270 7134804 YP_002426531.1 CDS AFE_2131 NC_011761.1 1883674 1885194 R identified by match to protein family HMM PF00171; aldehyde dehydrogenase (NAD) family protein complement(1883674..1885194) Acidithiobacillus ferrooxidans ATCC 23270 7135062 YP_002426532.1 CDS proS NC_011761.1 1885497 1887209 D identified by similarity to SP:P16659; match to protein family HMM PF00587; match to protein family HMM PF03129; match to protein family HMM PF04073; match to protein family HMM TIGR00409; prolyl-tRNA synthetase 1885497..1887209 Acidithiobacillus ferrooxidans ATCC 23270 7137023 YP_002426533.1 CDS AFE_2133 NC_011761.1 1887196 1887678 D identified by match to protein family HMM PF00582; universal stress family protein 1887196..1887678 Acidithiobacillus ferrooxidans ATCC 23270 7134356 YP_002426534.1 CDS AFE_2134 NC_011761.1 1887691 1888356 R identified by similarity to GB:CAD13844.1; lipoprotein complement(1887691..1888356) Acidithiobacillus ferrooxidans ATCC 23270 7136695 YP_002426535.1 CDS AFE_2135 NC_011761.1 1888361 1889299 R identified by match to protein family HMM PF02470; mce-like protein complement(1888361..1889299) Acidithiobacillus ferrooxidans ATCC 23270 7135958 YP_002426536.1 CDS pcm-1 NC_011761.1 1889451 1890104 D identified by similarity to SP:P24206; match to protein family HMM PF01135; protein-L-isoaspartate O-methyltransferase 1889451..1890104 Acidithiobacillus ferrooxidans ATCC 23270 7134214 YP_002426537.1 CDS AFE_2137 NC_011761.1 1890111 1890656 D identified by match to protein family HMM PF00857; hydrolase 1890111..1890656 Acidithiobacillus ferrooxidans ATCC 23270 7135086 YP_002426538.1 CDS AFE_2138 NC_011761.1 1890637 1892490 D identified by match to protein family HMM PF05299; PDZ domain-containing protein 1890637..1892490 Acidithiobacillus ferrooxidans ATCC 23270 7135598 YP_002426539.1 CDS AFE_2139 NC_011761.1 1892493 1893293 R identified by similarity to PIR:AF3015; match to protein family HMM PF00149; match to protein family HMM TIGR00282; hypothetical protein complement(1892493..1893293) Acidithiobacillus ferrooxidans ATCC 23270 7134103 YP_002426540.1 CDS AFE_2140 NC_011761.1 1893293 1893868 R identified by match to protein family HMM PF01812; match to protein family HMM TIGR02727; 5-formyltetrahydrofolate cyclo-ligase complement(1893293..1893868) Acidithiobacillus ferrooxidans ATCC 23270 7134420 YP_002426541.1 CDS AFE_2142 NC_011761.1 1894099 1894413 R identified by similarity to GB:AAO28668.1; match to protein family HMM PF05164; hypothetical protein complement(1894099..1894413) Acidithiobacillus ferrooxidans ATCC 23270 7135992 YP_002426542.1 CDS AFE_2143 NC_011761.1 1894441 1894698 R identified by glimmer; putative; hypothetical protein complement(1894441..1894698) Acidithiobacillus ferrooxidans ATCC 23270 7136442 YP_002426543.1 CDS AFE_2144 NC_011761.1 1894765 1896675 D identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 2 1894765..1896675 Acidithiobacillus ferrooxidans ATCC 23270 7134013 YP_002426544.1 CDS rplY NC_011761.1 1896688 1897296 D identified by similarity to SP:P14194; match to protein family HMM PF01386; match to protein family HMM TIGR00731; 50S ribosomal protein L25 1896688..1897296 Acidithiobacillus ferrooxidans ATCC 23270 7134671 YP_002426545.1 CDS pth NC_011761.1 1897303 1897872 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1897303..1897872 Acidithiobacillus ferrooxidans ATCC 23270 7137205 YP_002426546.1 CDS ychF NC_011761.1 1897882 1898973 D identified by match to protein family HMM PF01926; match to protein family HMM PF06071; match to protein family HMM TIGR00092; GTP-binding protein YchF 1897882..1898973 Acidithiobacillus ferrooxidans ATCC 23270 7136053 YP_002426547.1 CDS AFE_2148 NC_011761.1 1899031 1899576 D identified by similarity to GB:AAO56394.1; match to protein family HMM PF01381; match to protein family HMM PF07883; DNA-binding protein 1899031..1899576 Acidithiobacillus ferrooxidans ATCC 23270 7136792 YP_002426548.1 CDS hyfB NC_011761.1 1899573 1901555 D identified by similarity to SP:P23482; match to protein family HMM PF00361; hydrogenase 4 subunit B 1899573..1901555 Acidithiobacillus ferrooxidans ATCC 23270 7136487 YP_002426549.1 CDS hyfC NC_011761.1 1901552 1902493 D identified by similarity to SP:P77858; match to protein family HMM PF00146; hydrogenase-4, C subunit 1901552..1902493 Acidithiobacillus ferrooxidans ATCC 23270 7135814 YP_002426550.1 CDS hyfE NC_011761.1 1902495 1903172 D identified by similarity to SP:P77524; hydrogenase-4, E subunit 1902495..1903172 Acidithiobacillus ferrooxidans ATCC 23270 7136272 YP_002426551.1 CDS hyfF NC_011761.1 1903172 1904626 D identified by similarity to SP:P77437; match to protein family HMM PF00361; hydrogenase 4 subunit F 1903172..1904626 Acidithiobacillus ferrooxidans ATCC 23270 7134189 YP_002426552.1 CDS hyfG NC_011761.1 1904637 1906184 D identified by similarity to SP:P77329; match to protein family HMM PF00329; match to protein family HMM PF00346; hydrogenase-4, G subunit 1904637..1906184 Acidithiobacillus ferrooxidans ATCC 23270 7134531 YP_002426553.1 CDS hyfI NC_011761.1 1906221 1906718 D identified by similarity to SP:P77668; match to protein family HMM PF01058; hydrogenase-4, I subunit 1906221..1906718 Acidithiobacillus ferrooxidans ATCC 23270 7135103 YP_002426554.1 CDS cbbL2 NC_011761.1 1906975 1908354 D catalyzes the carboxylation of D-ribulose 1,5-bisphosphate in carbon dioxide fixation; ribulose bisphosphate carboxylase 1906975..1908354 Acidithiobacillus ferrooxidans ATCC 23270 7135607 YP_002426555.1 CDS cbbQ-2 NC_011761.1 1908504 1909322 D identified by similarity to GB:BAA76361.1; match to protein family HMM PF07728; match to protein family HMM PF08406; CbbQ protein 1908504..1909322 Acidithiobacillus ferrooxidans ATCC 23270 7135716 YP_002426556.1 CDS AFE_2157 NC_011761.1 1909341 1911620 D identified by match to protein family HMM PF00092; von Willebrand factor type A domain-containing protein 1909341..1911620 Acidithiobacillus ferrooxidans ATCC 23270 7137060 YP_002426557.1 CDS AFE_2158 NC_011761.1 1911627 1912532 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(1911627..1912532) Acidithiobacillus ferrooxidans ATCC 23270 7136926 YP_002426558.1 CDS phnA NC_011761.1 1912535 1912876 R identified by match to protein family HMM PF03831; match to protein family HMM PF08274; match to protein family HMM TIGR00686; alkylphosphonate utilization operon protein PhnA complement(1912535..1912876) Acidithiobacillus ferrooxidans ATCC 23270 7135625 YP_002426559.1 CDS AFE_2160 NC_011761.1 1912890 1913597 R identified by similarity to GB:CAE33855.1; hypothetical protein complement(1912890..1913597) Acidithiobacillus ferrooxidans ATCC 23270 7136655 YP_002426560.1 CDS AFE_2161 NC_011761.1 1913830 1915695 D identified by similarity to GB:AAM36869.1; hypothetical protein 1913830..1915695 Acidithiobacillus ferrooxidans ATCC 23270 7135239 YP_002426561.1 CDS AFE_2162 NC_011761.1 1915692 1915805 D identified by glimmer; putative; hypothetical protein 1915692..1915805 Acidithiobacillus ferrooxidans ATCC 23270 7134265 YP_002426562.1 CDS AFE_2163 NC_011761.1 1916382 1916969 D identified by glimmer; putative; hypothetical protein 1916382..1916969 Acidithiobacillus ferrooxidans ATCC 23270 7134081 YP_002426563.1 CDS AFE_2164 NC_011761.1 1916988 1917176 D identified by glimmer; putative; hypothetical protein 1916988..1917176 Acidithiobacillus ferrooxidans ATCC 23270 7135554 YP_002426564.1 CDS AFE_2165 NC_011761.1 1917733 1918266 D identified by glimmer; putative; hypothetical protein 1917733..1918266 Acidithiobacillus ferrooxidans ATCC 23270 7134308 YP_002426565.1 CDS AFE_2166 NC_011761.1 1918446 1919783 D identified by similarity to SP:P22519; match to protein family HMM PF00529; toxin secretion protein, HlyD family 1918446..1919783 Acidithiobacillus ferrooxidans ATCC 23270 7134676 YP_002426566.1 CDS AFE_2167 NC_011761.1 1919780 1921951 D identified by similarity to SP:P22520; match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; toxin secretion ABC transporter ATP-binding protein, HlyB family 1919780..1921951 Acidithiobacillus ferrooxidans ATCC 23270 7134969 YP_002426567.1 CDS AFE_2169 NC_011761.1 1921986 1923476 D identified by similarity to SP:P11092; match to protein family HMM PF02321; outer membrane toxin secretion efflux protein 1921986..1923476 Acidithiobacillus ferrooxidans ATCC 23270 7135757 YP_002426568.1 CDS AFE_2168 NC_011761.1 1923425 1923649 R identified by glimmer; putative; hypothetical protein complement(1923425..1923649) Acidithiobacillus ferrooxidans ATCC 23270 7135663 YP_002426569.1 CDS AFE_2170 NC_011761.1 1923632 1924402 D identified by match to protein family HMM PF01522; polysaccharide deacetylase family protein 1923632..1924402 Acidithiobacillus ferrooxidans ATCC 23270 7136328 YP_002426570.1 CDS AFE_2171 NC_011761.1 1924414 1925781 D GTP-binding protein 1924414..1925781 Acidithiobacillus ferrooxidans ATCC 23270 7136082 YP_002426571.1 CDS AFE_2172 NC_011761.1 1925808 1927094 D identified by match to protein family HMM PF00144; beta-lactamase 1925808..1927094 Acidithiobacillus ferrooxidans ATCC 23270 7134700 YP_002426572.1 CDS AFE_2173 NC_011761.1 1927119 1927649 R identified by match to protein family HMM PF00293; NUDIX hydrolase complement(1927119..1927649) Acidithiobacillus ferrooxidans ATCC 23270 7134921 YP_002426573.1 CDS AFE_2174 NC_011761.1 1927731 1928174 R identified by match to protein family HMM PF00293; NUDIX hydrolase complement(1927731..1928174) Acidithiobacillus ferrooxidans ATCC 23270 7136172 YP_002426574.1 CDS rsuA NC_011761.1 1928171 1928926 R identified by similarity to SP:P33918; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; ribosomal small subunit pseudouridine synthase A complement(1928171..1928926) Acidithiobacillus ferrooxidans ATCC 23270 7136122 YP_002426575.1 CDS AFE_2176 NC_011761.1 1928969 1930000 D identified by match to protein family HMM PF04371; peptidyl-arginine deiminase 1928969..1930000 Acidithiobacillus ferrooxidans ATCC 23270 7136106 YP_002426576.1 CDS sreA NC_011761.1 1930213 1932942 D identified by similarity to GB:CAC86937.1; match to protein family HMM PF00384; match to protein family HMM PF01568; match to protein family HMM PF04879; sulfur reductase, molybdopterin subunit 1930213..1932942 Acidithiobacillus ferrooxidans ATCC 23270 7136723 YP_002426577.1 CDS sreB NC_011761.1 1932953 1933576 D identified by similarity to GB:CAC86938.1; match to protein family HMM PF00037; sulfur reductase, iron-sulfur binding subunit 1932953..1933576 Acidithiobacillus ferrooxidans ATCC 23270 7134034 YP_002426578.1 CDS sreC NC_011761.1 1933573 1934607 D identified by match to protein family HMM PF03916; sulfur reductase, membrane subunit 1933573..1934607 Acidithiobacillus ferrooxidans ATCC 23270 7136694 YP_002426579.1 CDS sreD NC_011761.1 1934549 1935115 D identified by similarity to GB:BAC59713.1; sulfur reductase 1934549..1935115 Acidithiobacillus ferrooxidans ATCC 23270 7134468 YP_002426580.1 CDS AFE_2180 NC_011761.1 1935091 1935768 R identified by glimmer; putative; hypothetical protein complement(1935091..1935768) Acidithiobacillus ferrooxidans ATCC 23270 7135297 YP_002426581.1 CDS AFE_2182 NC_011761.1 1935894 1936169 R identified by glimmer; putative; hypothetical protein complement(1935894..1936169) Acidithiobacillus ferrooxidans ATCC 23270 7136243 YP_002426582.1 CDS AFE_2183 NC_011761.1 1936227 1936658 R identified by match to protein family HMM PF00582; universal stress family protein complement(1936227..1936658) Acidithiobacillus ferrooxidans ATCC 23270 7134107 YP_002426583.1 CDS AFE_2184 NC_011761.1 1936711 1938255 R identified by match to protein family HMM PF07690; match to protein family HMM TIGR00711; EmrB/QacA family drug resistance transporter complement(1936711..1938255) Acidithiobacillus ferrooxidans ATCC 23270 7134461 YP_002426584.1 CDS AFE_2185 NC_011761.1 1938258 1938701 R identified by match to protein family HMM PF01047; MarR family transcriptional regulator complement(1938258..1938701) Acidithiobacillus ferrooxidans ATCC 23270 7136286 YP_002426585.1 CDS lgt NC_011761.1 1938886 1939704 D identified by similarity to SP:P37149; match to protein family HMM PF01790; match to protein family HMM TIGR00544; prolipoprotein diacylglyceryl transferase 1938886..1939704 Acidithiobacillus ferrooxidans ATCC 23270 7135040 YP_002426586.1 CDS rep NC_011761.1 1939726 1941714 D identified by similarity to SP:P09980; match to protein family HMM PF00580; ATP-dependent DNA helicase Rep 1939726..1941714 Acidithiobacillus ferrooxidans ATCC 23270 7134146 YP_002426587.1 CDS rpsT NC_011761.1 1941815 1942090 R binds directly to the 16S rRNA and is involved in post-translational inhibition of arginine and ornithine decarboxylase; 30S ribosomal protein S20 complement(1941815..1942090) Acidithiobacillus ferrooxidans ATCC 23270 7135701 YP_002426588.1 CDS AFE_2189 NC_011761.1 1942226 1943239 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(1942226..1943239) Acidithiobacillus ferrooxidans ATCC 23270 7134429 YP_002426589.1 CDS AFE_2190 NC_011761.1 1943259 1944062 R identified by match to protein family HMM PF00528; ABC transporter permease complement(1943259..1944062) Acidithiobacillus ferrooxidans ATCC 23270 7135056 YP_002426590.1 CDS AFE_2191 NC_011761.1 1944076 1944291 D identified by glimmer; putative; hypothetical protein 1944076..1944291 Acidithiobacillus ferrooxidans ATCC 23270 7136452 YP_002426591.1 CDS AFE_2192 NC_011761.1 1944279 1944716 D identified by glimmer; putative; hypothetical protein 1944279..1944716 Acidithiobacillus ferrooxidans ATCC 23270 7135641 YP_002426592.1 CDS apaH NC_011761.1 1944720 1945559 D hydrolyzes P(1),P(4)-bis(5'-adenosyl) tetraphosphate to form 2 ADP; diadenosine tetraphosphatase 1944720..1945559 Acidithiobacillus ferrooxidans ATCC 23270 7136539 YP_002426593.1 CDS recQ NC_011761.1 1945615 1947426 D identified by similarity to SP:P15043; match to protein family HMM PF00270; match to protein family HMM PF00271; match to protein family HMM PF00570; match to protein family HMM TIGR00614; match to protein family HMM TIGR01389; ATP-dependent DNA helicase RecQ 1945615..1947426 Acidithiobacillus ferrooxidans ATCC 23270 7134395 YP_002426594.1 CDS cyaY NC_011761.1 1947514 1947828 D identified by match to protein family HMM PF01491; match to protein family HMM TIGR03421; cyaY protein 1947514..1947828 Acidithiobacillus ferrooxidans ATCC 23270 7135409 YP_002426595.1 CDS AFE_2196 NC_011761.1 1947833 1948285 D identified by similarity to PIR:D75504; match to protein family HMM PF01878; hypothetical protein 1947833..1948285 Acidithiobacillus ferrooxidans ATCC 23270 7136852 YP_002426596.1 CDS AFE_2198 NC_011761.1 1948275 1948373 D identified by glimmer; putative; hypothetical protein 1948275..1948373 Acidithiobacillus ferrooxidans ATCC 23270 7135358 YP_002426597.1 CDS AFE_2197 NC_011761.1 1948351 1948776 R identified by glimmer; putative; hypothetical protein complement(1948351..1948776) Acidithiobacillus ferrooxidans ATCC 23270 7135667 YP_002426598.1 CDS AFE_2199 NC_011761.1 1948739 1949812 R identified by match to protein family HMM PF03739; YjgP/YjgQ family protein complement(1948739..1949812) Acidithiobacillus ferrooxidans ATCC 23270 7137076 YP_002426599.1 CDS AFE_2200 NC_011761.1 1949809 1950930 R identified by match to protein family HMM PF03739; YjgP/YjgQ family protein complement(1949809..1950930) Acidithiobacillus ferrooxidans ATCC 23270 7135180 YP_002426600.1 CDS pepA NC_011761.1 1951047 1952549 D identified by similarity to SP:P11648; match to protein family HMM PF00883; match to protein family HMM PF02789; cytosol aminopeptidase 1951047..1952549 Acidithiobacillus ferrooxidans ATCC 23270 7135385 YP_002426601.1 CDS holC NC_011761.1 1952562 1952987 D identified by similarity to SP:P28905; match to protein family HMM PF04364; DNA polymerase III subunit chi 1952562..1952987 Acidithiobacillus ferrooxidans ATCC 23270 7136667 YP_002426602.1 CDS AFE_2202 NC_011761.1 1952940 1953743 R identified by glimmer; putative; hypothetical protein complement(1952940..1953743) Acidithiobacillus ferrooxidans ATCC 23270 7136223 YP_002426603.1 CDS valS NC_011761.1 1953693 1956509 D identified by similarity to SP:P07118; match to protein family HMM PF00133; match to protein family HMM PF08264; match to protein family HMM PF09334; match to protein family HMM TIGR00422; valyl-tRNA synthetase 1953693..1956509 Acidithiobacillus ferrooxidans ATCC 23270 7135426 YP_002426604.1 CDS nhaA NC_011761.1 1956585 1957895 D identified by match to protein family HMM PF06965; match to protein family HMM TIGR00773; Na+/H+ antiporter NhaA 1956585..1957895 Acidithiobacillus ferrooxidans ATCC 23270 7134765 YP_002426605.1 CDS nadC NC_011761.1 1957892 1958719 D identified by similarity to SP:P30011; match to protein family HMM PF01729; match to protein family HMM PF02749; match to protein family HMM TIGR00078; nicotinate-nucleotide pyrophosphorylase 1957892..1958719 Acidithiobacillus ferrooxidans ATCC 23270 7136560 YP_002426606.1 CDS AFE_2207 NC_011761.1 1958732 1959976 R identified by glimmer; putative; hypothetical protein complement(1958732..1959976) Acidithiobacillus ferrooxidans ATCC 23270 7134930 YP_002426607.1 CDS AFE_2209 NC_011761.1 1960136 1960750 D identified by match to protein family HMM PF00440; TetR family transcriptional regulator 1960136..1960750 Acidithiobacillus ferrooxidans ATCC 23270 7137256 YP_002426608.1 CDS AFE_2208 NC_011761.1 1960736 1960855 R identified by glimmer; putative; hypothetical protein complement(1960736..1960855) Acidithiobacillus ferrooxidans ATCC 23270 7134562 YP_002426609.1 CDS AFE_2210 NC_011761.1 1960842 1961570 D identified by match to protein family HMM PF01738; match to protein family HMM PF08840; carboxymethylenebutenolidase family protein 1960842..1961570 Acidithiobacillus ferrooxidans ATCC 23270 7135280 YP_002426610.1 CDS AFE_2211 NC_011761.1 1961567 1962643 D identified by match to protein family HMM PF00724; FAD/FMN-binding oxidoreductase 1961567..1962643 Acidithiobacillus ferrooxidans ATCC 23270 7135638 YP_002426611.1 CDS AFE_2212 NC_011761.1 1962726 1963352 R identified by similarity to GB:AAM38230.1; hypothetical protein complement(1962726..1963352) Acidithiobacillus ferrooxidans ATCC 23270 7134228 YP_002426612.1 CDS AFE_2214 NC_011761.1 1963560 1964126 D identified by similarity to GB:AAM40463.1; match to protein family HMM PF05656; hypothetical protein 1963560..1964126 Acidithiobacillus ferrooxidans ATCC 23270 7136016 YP_002426613.1 CDS AFE_2215 NC_011761.1 1964159 1964953 D identified by match to protein family HMM TIGR01444; FkbM family methyltransferase 1964159..1964953 Acidithiobacillus ferrooxidans ATCC 23270 7135688 YP_002426614.1 CDS AFE_2217 NC_011761.1 1965070 1965963 D identified by match to protein family HMM PF00561; alpha/beta hydrolase 1965070..1965963 Acidithiobacillus ferrooxidans ATCC 23270 7136807 YP_002426615.1 CDS AFE_2216 NC_011761.1 1965956 1966525 R identified by match to protein family HMM PF04140; hypothetical protein complement(1965956..1966525) Acidithiobacillus ferrooxidans ATCC 23270 7137287 YP_002426616.1 CDS AFE_2218 NC_011761.1 1966631 1967314 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; HAD-superfamily hydrolase complement(1966631..1967314) Acidithiobacillus ferrooxidans ATCC 23270 7136570 YP_002426617.1 CDS rluC NC_011761.1 1967311 1968264 R identified by similarity to SP:P23851; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00005; ribosomal large subunit pseudouridine synthase C complement(1967311..1968264) Acidithiobacillus ferrooxidans ATCC 23270 7135049 YP_002426618.1 CDS AFE_2220 NC_011761.1 1968461 1970809 D identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease, Rne/Rng family 1968461..1970809 Acidithiobacillus ferrooxidans ATCC 23270 7136832 YP_002426619.1 CDS cysS NC_011761.1 1970852 1972240 R identified by similarity to SP:P21888; match to protein family HMM PF01406; match to protein family HMM PF09190; match to protein family HMM PF09334; match to protein family HMM TIGR00435; cysteinyl-tRNA synthetase complement(1970852..1972240) Acidithiobacillus ferrooxidans ATCC 23270 7134174 YP_002426620.1 CDS gltX-1 NC_011761.1 1972237 1973763 R identified by similarity to SP:P22250; match to protein family HMM PF00749; match to protein family HMM TIGR00464; glutamyl-tRNA synthetase complement(1972237..1973763) Acidithiobacillus ferrooxidans ATCC 23270 7135001 YP_002426621.1 CDS AFE_2223 NC_011761.1 1973783 1976272 D identified by similarity to SP:P31776; match to protein family HMM PF00905; match to protein family HMM PF00912; penicillin-binding protein 1A 1973783..1976272 Acidithiobacillus ferrooxidans ATCC 23270 7134140 YP_002426622.1 CDS AFE_2224 NC_011761.1 1976273 1978633 D identified by match to protein family HMM PF00723; match to protein family HMM PF09137; glycosyl hydrolase family protein 1976273..1978633 Acidithiobacillus ferrooxidans ATCC 23270 7137239 YP_002426623.1 CDS AFE_2225 NC_011761.1 1978630 1979415 D identified by similarity to SP:P39482; match to protein family HMM PF00106; match to protein family HMM PF08659; glucose 1-dehydrogenase 1978630..1979415 Acidithiobacillus ferrooxidans ATCC 23270 7134397 YP_002426624.1 CDS AFE_2226 NC_011761.1 1979574 1981256 D identified by match to protein family HMM PF01636; hypothetical protein 1979574..1981256 Acidithiobacillus ferrooxidans ATCC 23270 7134113 YP_002426625.1 CDS AFE_2227 NC_011761.1 1981381 1982007 D identified by match to protein family HMM PF00702; HAD-superfamily hydrolase 1981381..1982007 Acidithiobacillus ferrooxidans ATCC 23270 7134900 YP_002426626.1 CDS kdpE NC_011761.1 1982060 1982803 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator KdpE complement(1982060..1982803) Acidithiobacillus ferrooxidans ATCC 23270 7136864 YP_002426627.1 CDS kdpD NC_011761.1 1982807 1985548 R identified by similarity to SP:P21865; match to protein family HMM PF00512; match to protein family HMM PF00582; match to protein family HMM PF02518; match to protein family HMM PF02702; sensor histidine kinase KdpD complement(1982807..1985548) Acidithiobacillus ferrooxidans ATCC 23270 7136911 YP_002426628.1 CDS AFE_2230 NC_011761.1 1985780 1985914 D identified by glimmer; putative; hypothetical protein 1985780..1985914 Acidithiobacillus ferrooxidans ATCC 23270 7137224 YP_002426629.1 CDS kdpF-2 NC_011761.1 1985911 1986003 D identified by match to protein family HMM TIGR02115; K+-transporting ATPase subunit F 1985911..1986003 Acidithiobacillus ferrooxidans ATCC 23270 7135051 YP_002426630.1 CDS kdpA-3 NC_011761.1 1986000 1987751 D identified by match to protein family HMM PF03814; match to protein family HMM TIGR00680; K+-transporting ATPase, A subunit 1986000..1987751 Acidithiobacillus ferrooxidans ATCC 23270 7135210 YP_002426631.1 CDS kdpB-2 NC_011761.1 1987764 1989833 D identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01497; K+-transporting ATPase subunit B 1987764..1989833 Acidithiobacillus ferrooxidans ATCC 23270 7135776 YP_002426632.1 CDS kdpC-2 NC_011761.1 1989846 1990466 D identified by match to protein family HMM PF02669; match to protein family HMM TIGR00681; K+-transporting ATPase subunit C 1989846..1990466 Acidithiobacillus ferrooxidans ATCC 23270 7135970 YP_002426633.1 CDS AFE_2235 NC_011761.1 1990514 1990780 D identified by glimmer; putative; hypothetical protein 1990514..1990780 Acidithiobacillus ferrooxidans ATCC 23270 7135621 YP_002426634.1 CDS AFE_2236 NC_011761.1 1990832 1990930 D identified by glimmer; putative; hypothetical protein 1990832..1990930 Acidithiobacillus ferrooxidans ATCC 23270 7135383 YP_002426635.1 CDS AFE_2238 NC_011761.1 1990978 1991508 D identified by match to protein family HMM PF00696; amino acid kinase family protein 1990978..1991508 Acidithiobacillus ferrooxidans ATCC 23270 7136237 YP_002426636.1 CDS AFE_2237 NC_011761.1 1991495 1991758 R identified by glimmer; putative; hypothetical protein complement(1991495..1991758) Acidithiobacillus ferrooxidans ATCC 23270 7134073 YP_002426637.1 CDS AFE_2239 NC_011761.1 1991751 1992794 D identified by glimmer; putative; hypothetical protein 1991751..1992794 Acidithiobacillus ferrooxidans ATCC 23270 7135745 YP_002426638.1 CDS glnK-2 NC_011761.1 1992850 1993248 D identified by similarity to SP:P38504; match to protein family HMM PF00543; nitrogen regulatory protein P-II 2 1992850..1993248 Acidithiobacillus ferrooxidans ATCC 23270 7134079 YP_002426639.1 CDS AFE_2241 NC_011761.1 1993245 1993544 D identified by glimmer; putative; hypothetical protein 1993245..1993544 Acidithiobacillus ferrooxidans ATCC 23270 7136398 YP_002426640.1 CDS AFE_2242 NC_011761.1 1993603 1993962 D identified by glimmer; putative; hypothetical protein 1993603..1993962 Acidithiobacillus ferrooxidans ATCC 23270 7134129 YP_002426641.1 CDS AFE_2243 NC_011761.1 1993972 1994064 D identified by glimmer; putative; hypothetical protein 1993972..1994064 Acidithiobacillus ferrooxidans ATCC 23270 7134914 YP_002426642.1 CDS AFE_2244 NC_011761.1 1994243 1994515 D identified by glimmer; putative; hypothetical protein 1994243..1994515 Acidithiobacillus ferrooxidans ATCC 23270 7135934 YP_002426643.1 CDS AFE_2245 NC_011761.1 1994717 1995910 D identified by match to protein family HMM PF00999; Na+/H+ antiporter 1994717..1995910 Acidithiobacillus ferrooxidans ATCC 23270 7136625 YP_002426644.1 CDS AFE_2247 NC_011761.1 1996010 1996174 D identified by glimmer; putative; hypothetical protein 1996010..1996174 Acidithiobacillus ferrooxidans ATCC 23270 7135443 YP_002426645.1 CDS AFE_2246 NC_011761.1 1996167 1996772 R identified by similarity to SP:P77202; dsbG domain-containing protein complement(1996167..1996772) Acidithiobacillus ferrooxidans ATCC 23270 7134110 YP_002426646.1 CDS AFE_2248 NC_011761.1 1996887 1997327 R lipoprotein complement(1996887..1997327) Acidithiobacillus ferrooxidans ATCC 23270 7136873 YP_002426647.1 CDS AFE_2249 NC_011761.1 1997133 1997552 D identified by glimmer; putative; hypothetical protein 1997133..1997552 Acidithiobacillus ferrooxidans ATCC 23270 7137137 YP_002426648.1 CDS AFE_2250 NC_011761.1 1997955 1999076 R identified by match to protein family HMM PF04966; carbohydrate-selective porin, OprB family complement(1997955..1999076) Acidithiobacillus ferrooxidans ATCC 23270 7136175 YP_002426649.1 CDS AFE_2251 NC_011761.1 1999089 2000276 R identified by similarity to SP:P54741; PQQ enzyme repeat domain-containing protein complement(1999089..2000276) Acidithiobacillus ferrooxidans ATCC 23270 7136413 YP_002426650.1 CDS AFE_2252 NC_011761.1 2000631 2001302 D identified by match to protein family HMM TIGR01409; Tat (twin-arginine translocation) pathway signal sequence domain-containing protein 2000631..2001302 Acidithiobacillus ferrooxidans ATCC 23270 7134526 YP_002426651.1 CDS AFE_2253 NC_011761.1 2001409 2006118 D identified by similarity to GB:BAB48985.1; match to protein family HMM PF00515; match to protein family HMM PF01835; match to protein family HMM PF07703; hypothetical protein 2001409..2006118 Acidithiobacillus ferrooxidans ATCC 23270 7136551 YP_002426652.1 CDS AFE_2254 NC_011761.1 2006126 2008192 D identified by similarity to SP:P76577; match to protein family HMM PF00905; match to protein family HMM PF00912; penicillin-binding protein 1C 2006126..2008192 Acidithiobacillus ferrooxidans ATCC 23270 7134705 YP_002426653.1 CDS AFE_2255 NC_011761.1 2008488 2008829 R identified by glimmer; putative; hypothetical protein complement(2008488..2008829) Acidithiobacillus ferrooxidans ATCC 23270 7134414 YP_002426654.1 CDS AFE_2256 NC_011761.1 2008854 2009645 R identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein complement(2008854..2009645) Acidithiobacillus ferrooxidans ATCC 23270 7137301 YP_002426655.1 CDS AFE_2257 NC_011761.1 2009789 2010544 R hypothetical protein complement(2009789..2010544) Acidithiobacillus ferrooxidans ATCC 23270 7134971 YP_002426656.1 CDS AFE_2258 NC_011761.1 2010545 2011435 R identified by match to protein family HMM PF01925; hypothetical protein complement(2010545..2011435) Acidithiobacillus ferrooxidans ATCC 23270 7134432 YP_002426657.1 CDS AFE_2259 NC_011761.1 2011464 2011997 R identified by match to protein family HMM PF00582; universal stress family protein complement(2011464..2011997) Acidithiobacillus ferrooxidans ATCC 23270 7136737 YP_002426658.1 CDS purH NC_011761.1 2012238 2013812 D identified by similarity to SP:P15639; match to protein family HMM PF01808; match to protein family HMM PF02142; match to protein family HMM TIGR00355; phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 2012238..2013812 Acidithiobacillus ferrooxidans ATCC 23270 7135650 YP_002426659.1 CDS purD NC_011761.1 2013826 2015088 D identified by similarity to SP:P15640; match to protein family HMM PF01071; match to protein family HMM PF02843; match to protein family HMM PF02844; match to protein family HMM TIGR00877; phosphoribosylamine--glycine ligase 2013826..2015088 Acidithiobacillus ferrooxidans ATCC 23270 7135301 YP_002426660.1 CDS AFE_2262 NC_011761.1 2015104 2015664 D identified by match to protein family HMM PF01300; Sua5/YciO/YrdC family protein 2015104..2015664 Acidithiobacillus ferrooxidans ATCC 23270 7135755 YP_002426661.1 CDS hemF NC_011761.1 2015669 2016559 D catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase 2015669..2016559 Acidithiobacillus ferrooxidans ATCC 23270 7134553 YP_002426662.1 CDS pyrD NC_011761.1 2016556 2017647 D identified by similarity to SP:P05021; match to protein family HMM PF01180; match to protein family HMM TIGR01036; dihydroorotate dehydrogenase 2016556..2017647 Acidithiobacillus ferrooxidans ATCC 23270 7134338 YP_002426663.1 CDS AFE_2265 NC_011761.1 2017807 2017956 D lipoprotein 2017807..2017956 Acidithiobacillus ferrooxidans ATCC 23270 7134209 YP_002426664.1 CDS AFE_2266 NC_011761.1 2018240 2018821 D identified by match to protein family HMM PF00583; GNAT family acetyltransferase 2018240..2018821 Acidithiobacillus ferrooxidans ATCC 23270 7135710 YP_002426665.1 CDS AFE_2267 NC_011761.1 2018825 2020396 R identified by match to protein family HMM PF04185; match to protein family HMM TIGR01409; phosphoesterase family protein complement(2018825..2020396) Acidithiobacillus ferrooxidans ATCC 23270 7136474 YP_002426666.1 CDS AFE_2268 NC_011761.1 2020456 2021169 R identified by match to protein family HMM TIGR01352; TonB family protein complement(2020456..2021169) Acidithiobacillus ferrooxidans ATCC 23270 7136259 YP_002426667.1 CDS AFE_2269 NC_011761.1 2021191 2021592 R identified by match to protein family HMM PF02472; ExbD/TolR family biopolymer transport protein complement(2021191..2021592) Acidithiobacillus ferrooxidans ATCC 23270 7135518 YP_002426668.1 CDS AFE_2270 NC_011761.1 2021592 2022275 R identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein complement(2021592..2022275) Acidithiobacillus ferrooxidans ATCC 23270 7135664 YP_002426669.1 CDS AFE_2271 NC_011761.1 2022340 2023056 R identified by match to protein family HMM PF00486; transcriptional regulator complement(2022340..2023056) Acidithiobacillus ferrooxidans ATCC 23270 7136558 YP_002426670.1 CDS AFE_2272 NC_011761.1 2023277 2023789 R identified by glimmer; putative; hypothetical protein complement(2023277..2023789) Acidithiobacillus ferrooxidans ATCC 23270 7136037 YP_002426671.1 CDS AFE_2273 NC_011761.1 2024266 2024958 D identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 2024266..2024958 Acidithiobacillus ferrooxidans ATCC 23270 7135746 YP_002426672.1 CDS AFE_2274 NC_011761.1 2024992 2027880 D identified by similarity to PIR:AG1979; match to protein family HMM PF01436; match to protein family HMM PF08450; hypothetical protein 2024992..2027880 Acidithiobacillus ferrooxidans ATCC 23270 7134060 YP_002426673.1 CDS AFE_2275 NC_011761.1 2027955 2028683 D identified by match to protein family HMM TIGR01352; TonB family protein 2027955..2028683 Acidithiobacillus ferrooxidans ATCC 23270 7136400 YP_002426674.1 CDS AFE_2276 NC_011761.1 2028722 2029321 D identified by similarity to PIR:D83296; match to protein family HMM TIGR03276; hypothetical protein 2028722..2029321 Acidithiobacillus ferrooxidans ATCC 23270 7136812 YP_002426675.1 CDS AFE_2277 NC_011761.1 2029360 2030757 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter 2029360..2030757 Acidithiobacillus ferrooxidans ATCC 23270 7135937 YP_002426676.1 CDS phnG NC_011761.1 2030857 2031333 D identified by similarity to SP:P16685; match to protein family HMM TIGR03293; phosphonate metabolism protein PhnG 2030857..2031333 Acidithiobacillus ferrooxidans ATCC 23270 7135616 YP_002426677.1 CDS phnH NC_011761.1 2031330 2031872 D identified by similarity to SP:P16686; phosphonate metabolism protein phnH 2031330..2031872 Acidithiobacillus ferrooxidans ATCC 23270 7136071 YP_002426678.1 CDS phnI NC_011761.1 2031876 2032973 D identified by similarity to SP:P16687; match to protein family HMM PF05861; phosphonate metabolism protein PhnI 2031876..2032973 Acidithiobacillus ferrooxidans ATCC 23270 7136822 YP_002426679.1 CDS phnJ NC_011761.1 2032970 2033794 D identified by similarity to SP:P16688; match to protein family HMM PF06007; phosphonate metabolism protein PhnJ 2032970..2033794 Acidithiobacillus ferrooxidans ATCC 23270 7134104 YP_002426680.1 CDS phnK NC_011761.1 2033791 2034573 D identified by similarity to SP:P16678; match to protein family HMM PF00005; match to protein family HMM TIGR02323; phosphonate C-P lyase system protein PhnK 2033791..2034573 Acidithiobacillus ferrooxidans ATCC 23270 7135466 YP_002426681.1 CDS phnL NC_011761.1 2034570 2035268 D identified by similarity to SP:P16679; match to protein family HMM PF00005; match to protein family HMM TIGR02324; phosphonate ABC transporter ATP-binding protein PhnL 2034570..2035268 Acidithiobacillus ferrooxidans ATCC 23270 7135197 YP_002426682.1 CDS AFE_2284 NC_011761.1 2035265 2036401 D identified by similarity to SP:P16689; match to protein family HMM PF01979; match to protein family HMM PF07969; match to protein family HMM TIGR02318; phnM protein 2035265..2036401 Acidithiobacillus ferrooxidans ATCC 23270 7134661 YP_002426683.1 CDS AFE_2285 NC_011761.1 2036409 2037086 D identified by similarity to GB:BAB51509.1; match to protein family HMM PF06299; match to protein family HMM TIGR03223; hypothetical protein 2036409..2037086 Acidithiobacillus ferrooxidans ATCC 23270 7135000 YP_002426684.1 CDS AFE_2286 NC_011761.1 2037079 2037624 D identified by similarity to SP:P16690; PhnN protein 2037079..2037624 Acidithiobacillus ferrooxidans ATCC 23270 7135506 YP_002426685.1 CDS AFE_2287 NC_011761.1 2037621 2038373 D identified by match to protein family HMM PF00392; match to protein family HMM TIGR02325; GntR family transcriptional regulator 2037621..2038373 Acidithiobacillus ferrooxidans ATCC 23270 7136702 YP_002426686.1 CDS AFE_2288 NC_011761.1 2038483 2040813 R identified by match to protein family HMM PF00593; TonB-dependent receptor complement(2038483..2040813) Acidithiobacillus ferrooxidans ATCC 23270 7134048 YP_002426687.1 CDS AFE_2290 NC_011761.1 2041035 2041256 D identified by glimmer; putative; hypothetical protein 2041035..2041256 Acidithiobacillus ferrooxidans ATCC 23270 7135689 YP_002426688.1 CDS AFE_2291 NC_011761.1 2041394 2041534 D identified by glimmer; putative; hypothetical protein 2041394..2041534 Acidithiobacillus ferrooxidans ATCC 23270 7135627 YP_002426689.1 CDS AFE_2292 NC_011761.1 2041664 2043985 R identified by match to protein family HMM PF00593; TonB-dependent receptor complement(2041664..2043985) Acidithiobacillus ferrooxidans ATCC 23270 7135414 YP_002426690.1 CDS AFE_2293 NC_011761.1 2044258 2044377 R identified by glimmer; putative; hypothetical protein complement(2044258..2044377) Acidithiobacillus ferrooxidans ATCC 23270 7136674 YP_002426691.1 CDS AFE_2295 NC_011761.1 2044926 2045183 D identified by similarity to SP:Q8CSV0; hypothetical protein 2044926..2045183 Acidithiobacillus ferrooxidans ATCC 23270 7135762 YP_002426692.1 CDS AFE_2296 NC_011761.1 2045521 2045832 D identified by similarity to GB:CAD64331.1; hypothetical protein 2045521..2045832 Acidithiobacillus ferrooxidans ATCC 23270 7136943 YP_002426693.1 CDS AFE_2297 NC_011761.1 2046144 2046842 D identified by match to protein family HMM PF04185; match to protein family HMM TIGR01409; phosphoesterase family protein 2046144..2046842 Acidithiobacillus ferrooxidans ATCC 23270 7136338 YP_002426694.1 CDS AFE_2298 NC_011761.1 2046937 2049144 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2046937..2049144 Acidithiobacillus ferrooxidans ATCC 23270 7135234 YP_002426695.1 CDS AFE_2299 NC_011761.1 2049200 2049877 D identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 2049200..2049877 Acidithiobacillus ferrooxidans ATCC 23270 7136268 YP_002426696.1 CDS AFE_2300 NC_011761.1 2049895 2050269 D identified by match to protein family HMM PF02472; ExbD/TolR family biopolymer transport protein 2049895..2050269 Acidithiobacillus ferrooxidans ATCC 23270 7134805 YP_002426697.1 CDS AFE_2301 NC_011761.1 2050275 2051003 D identified by match to protein family HMM PF03544; match to protein family HMM TIGR01352; TonB family protein 2050275..2051003 Acidithiobacillus ferrooxidans ATCC 23270 7134678 YP_002426698.1 CDS AFE_2302 NC_011761.1 2051024 2053240 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2051024..2053240 Acidithiobacillus ferrooxidans ATCC 23270 7134099 YP_002426699.1 CDS AFE_2303 NC_011761.1 2053341 2056178 D identified by similarity to PIR:AG1979; hypothetical protein 2053341..2056178 Acidithiobacillus ferrooxidans ATCC 23270 7136501 YP_002426700.1 CDS AFE_2304 NC_011761.1 2056188 2056967 D identified by match to protein family HMM TIGR01352; TonB family protein 2056188..2056967 Acidithiobacillus ferrooxidans ATCC 23270 7135073 YP_002426701.1 CDS AFE_2305 NC_011761.1 2057004 2057399 D identified by glimmer; putative; hypothetical protein 2057004..2057399 Acidithiobacillus ferrooxidans ATCC 23270 7134565 YP_002426702.1 CDS AFE_2306 NC_011761.1 2057410 2058177 R identified by match to protein family HMM PF00486; DNA-binding response regulator complement(2057410..2058177) Acidithiobacillus ferrooxidans ATCC 23270 7135363 YP_002426703.1 CDS AFE_2307 NC_011761.1 2058288 2058494 R identified by similarity to GB:AAO90256.1; hypothetical protein complement(2058288..2058494) Acidithiobacillus ferrooxidans ATCC 23270 7135108 YP_002426704.1 CDS AFE_2308 NC_011761.1 2058779 2058883 D identified by glimmer; putative; hypothetical protein 2058779..2058883 Acidithiobacillus ferrooxidans ATCC 23270 7134777 YP_002426705.1 CDS AFE_2309 NC_011761.1 2058953 2060227 R identified by glimmer; putative; hypothetical protein complement(2058953..2060227) Acidithiobacillus ferrooxidans ATCC 23270 7134918 YP_002426706.1 CDS AFE_2311 NC_011761.1 2060307 2060588 D identified by glimmer; putative; hypothetical protein 2060307..2060588 Acidithiobacillus ferrooxidans ATCC 23270 7136652 YP_002426707.1 CDS AFE_2312 NC_011761.1 2060969 2062327 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; match to protein family HMM TIGR00879; sugar transporter family protein complement(2060969..2062327) Acidithiobacillus ferrooxidans ATCC 23270 7136759 YP_002426708.1 CDS AFE_2313 NC_011761.1 2062633 2062989 R identified by glimmer; putative; hypothetical protein complement(2062633..2062989) Acidithiobacillus ferrooxidans ATCC 23270 7136275 YP_002426709.1 CDS sixA NC_011761.1 2063000 2063482 R identified by match to protein family HMM PF00300; match to protein family HMM TIGR00249; phosphohistidine phosphatase SixA complement(2063000..2063482) Acidithiobacillus ferrooxidans ATCC 23270 7136279 YP_002426710.1 CDS AFE_2316 NC_011761.1 2063766 2064302 R identified by similarity to SP:P37194; match to protein family HMM PF03843; outer membrane lipoprotein Slp complement(2063766..2064302) Acidithiobacillus ferrooxidans ATCC 23270 7136021 YP_002426711.1 CDS AFE_2317 NC_011761.1 2064299 2064409 R identified by glimmer; putative; hypothetical protein complement(2064299..2064409) Acidithiobacillus ferrooxidans ATCC 23270 7134380 YP_002426712.1 CDS AFE_2318 NC_011761.1 2064419 2065690 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(2064419..2065690) Acidithiobacillus ferrooxidans ATCC 23270 7136089 YP_002426713.1 CDS AFE_2319 NC_011761.1 2065711 2066391 R identified by match to protein family HMM PF00072; match to protein family HMM PF00486; DNA-binding response regulator complement(2065711..2066391) Acidithiobacillus ferrooxidans ATCC 23270 7135499 YP_002426714.1 CDS orn NC_011761.1 2066964 2067548 D identified by similarity to SP:P39287; match to protein family HMM PF00929; oligoribonuclease Orn 2066964..2067548 Acidithiobacillus ferrooxidans ATCC 23270 7135715 YP_002426715.1 CDS AFE_2321 NC_011761.1 2067695 2068783 D identified by match to protein family HMM PF00296; monooxygenase, luciferase-like protein 2067695..2068783 Acidithiobacillus ferrooxidans ATCC 23270 7136254 YP_002426716.1 CDS AFE_2322 NC_011761.1 2068789 2069745 D identified by similarity to SP:Q11166; match to protein family HMM PF01073; match to protein family HMM PF01370; hypothetical protein 2068789..2069745 Acidithiobacillus ferrooxidans ATCC 23270 7134514 YP_002426717.1 CDS AFE_2323 NC_011761.1 2069767 2070657 D identified by similarity to PIR:T35630; hypothetical protein 2069767..2070657 Acidithiobacillus ferrooxidans ATCC 23270 7136798 YP_002426718.1 CDS AFE_2324 NC_011761.1 2070717 2072348 D catalyzes the interconversion of alpha-D-glucose 1-phosphate to alpha-D-glucose 6-phosphate; phosphoglucomutase 2070717..2072348 Acidithiobacillus ferrooxidans ATCC 23270 7136589 YP_002426719.1 CDS AFE_2325 NC_011761.1 2072364 2072726 D identified by glimmer; putative; hypothetical protein 2072364..2072726 Acidithiobacillus ferrooxidans ATCC 23270 7135046 YP_002426720.1 CDS AFE_2327 NC_011761.1 2072856 2075399 D identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01524; magnesium-translocating P-type ATPase 2072856..2075399 Acidithiobacillus ferrooxidans ATCC 23270 7135853 YP_002426721.1 CDS AFE_2328 NC_011761.1 2075657 2076247 D identified by similarity to SP:P75925; match to protein family HMM PF01292; cytochrome b561 family protein 2075657..2076247 Acidithiobacillus ferrooxidans ATCC 23270 7136598 YP_002426722.1 CDS AFE_2329 NC_011761.1 2076516 2076887 D identified by glimmer; putative; hypothetical protein 2076516..2076887 Acidithiobacillus ferrooxidans ATCC 23270 7135133 YP_002426723.1 CDS AFE_2330 NC_011761.1 2076987 2077781 D identified by match to protein family HMM PF03988; hypothetical protein 2076987..2077781 Acidithiobacillus ferrooxidans ATCC 23270 7137251 YP_002426724.1 CDS AFE_2331 NC_011761.1 2077902 2078003 D identified by glimmer; putative; hypothetical protein 2077902..2078003 Acidithiobacillus ferrooxidans ATCC 23270 7136808 YP_002426725.1 CDS AFE_2333 NC_011761.1 2078182 2079498 D identified by match to protein family HMM PF07690; major facilitator family transporter 2078182..2079498 Acidithiobacillus ferrooxidans ATCC 23270 7134273 YP_002426726.1 CDS AFE_2332 NC_011761.1 2079380 2080306 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(2079380..2080306) Acidithiobacillus ferrooxidans ATCC 23270 7137074 YP_002426727.1 CDS AFE_2334 NC_011761.1 2080435 2080641 R identified by glimmer; putative; hypothetical protein complement(2080435..2080641) Acidithiobacillus ferrooxidans ATCC 23270 7135805 YP_002426728.1 CDS rpoD NC_011761.1 2080861 2082735 R identified by similarity to SP:P00579; match to protein family HMM PF00140; match to protein family HMM PF03979; match to protein family HMM PF04539; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF04546; match to protein family HMM TIGR02393; match to protein family HMM TIGR02937; RNA polymerase sigma factor RpoD complement(2080861..2082735) Acidithiobacillus ferrooxidans ATCC 23270 7135868 YP_002426729.1 CDS dnaG NC_011761.1 2082858 2084609 R identified by similarity to SP:O33470; match to protein family HMM PF01751; match to protein family HMM PF01807; match to protein family HMM PF08275; match to protein family HMM TIGR01391; DNA primase complement(2082858..2084609) Acidithiobacillus ferrooxidans ATCC 23270 7134188 YP_002426730.1 CDS AFE_2338 NC_011761.1 2084613 2086937 R identified by match to protein family HMM PF00488; match to protein family HMM PF01713; MutS2 family protein complement(2084613..2086937) Acidithiobacillus ferrooxidans ATCC 23270 7134809 YP_002426731.1 CDS AFE_2339 NC_011761.1 2086949 2087395 R identified by match to protein family HMM PF02637; GatB/Yqey domain-containing protein complement(2086949..2087395) Acidithiobacillus ferrooxidans ATCC 23270 7136061 YP_002426732.1 CDS rpsU NC_011761.1 2087395 2087610 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(2087395..2087610) Acidithiobacillus ferrooxidans ATCC 23270 7136656 YP_002426733.1 CDS AFE_2342 NC_011761.1 2087899 2088756 D identified by match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM PF08281; match to protein family HMM TIGR02937; RNA polymerase sigm-70 factor family 2087899..2088756 Acidithiobacillus ferrooxidans ATCC 23270 7134816 YP_002426734.1 CDS rdgB NC_011761.1 2088723 2089346 R identified by match to protein family HMM PF01725; match to protein family HMM TIGR00042; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase complement(2088723..2089346) Acidithiobacillus ferrooxidans ATCC 23270 7134328 YP_002426735.1 CDS rph NC_011761.1 2089343 2090071 R identified by match to protein family HMM PF01138; match to protein family HMM PF03725; match to protein family HMM TIGR01966; ribonuclease PH complement(2089343..2090071) Acidithiobacillus ferrooxidans ATCC 23270 7134651 YP_002426736.1 CDS AFE_2344 NC_011761.1 2090211 2090705 D identified by match to protein family HMM PF00027; cyclic nucleotide-binding domain-containing protein 2090211..2090705 Acidithiobacillus ferrooxidans ATCC 23270 7135780 YP_002426737.1 CDS AFE_2345 NC_011761.1 2090732 2091289 R identified by similarity to GB:AAN70383.1; match to protein family HMM PF02190; ATP-dependent protease La domain-containing protein complement(2090732..2091289) Acidithiobacillus ferrooxidans ATCC 23270 7134086 YP_002426738.1 CDS AFE_2346 NC_011761.1 2091314 2092471 D identified by match to protein family HMM PF04055; match to protein family HMM PF06969; match to protein family HMM TIGR00539; oxygen-independent coproporphyrinogen III oxidase 2091314..2092471 Acidithiobacillus ferrooxidans ATCC 23270 7134624 YP_002426739.1 CDS AFE_2347 NC_011761.1 2092486 2092797 R identified by similarity to GB:AAO90176.1; hypothetical protein complement(2092486..2092797) Acidithiobacillus ferrooxidans ATCC 23270 7134708 YP_002426740.1 CDS AFE_2348 NC_011761.1 2092821 2093615 D identified by similarity to SP:P37765; match to protein family HMM PF00849; match to protein family HMM PF01479; match to protein family HMM TIGR00093; RNA pseudouridine synthase family protein 2092821..2093615 Acidithiobacillus ferrooxidans ATCC 23270 7136285 YP_002426741.1 CDS AFE_2349 NC_011761.1 2093965 2095650 D identified by similarity to SP:P27304; match to protein family HMM PF07690; match to protein family HMM TIGR00711; multidrug resistance protein 2093965..2095650 Acidithiobacillus ferrooxidans ATCC 23270 7136951 YP_002426742.1 CDS AFE_2350 NC_011761.1 2095660 2096631 R identified by similarity to SP:P08506; match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase complement(2095660..2096631) Acidithiobacillus ferrooxidans ATCC 23270 7136067 YP_002426743.1 CDS AFE_2351 NC_011761.1 2096781 2097542 D identified by match to protein family HMM PF01925; hypothetical protein 2096781..2097542 Acidithiobacillus ferrooxidans ATCC 23270 7134232 YP_002426744.1 CDS AFE_2352 NC_011761.1 2097558 2098565 D identified by similarity to GB:BAC47910.1; match to protein family HMM PF00891; match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein 2097558..2098565 Acidithiobacillus ferrooxidans ATCC 23270 7134464 YP_002426745.1 CDS purL NC_011761.1 2098914 2102765 R catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase complement(2098914..2102765) Acidithiobacillus ferrooxidans ATCC 23270 7135831 YP_002426746.1 CDS purC NC_011761.1 2102836 2103558 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole succinocarboxamide synthase complement(2102836..2103558) Acidithiobacillus ferrooxidans ATCC 23270 7137078 YP_002426747.1 CDS purB NC_011761.1 2103555 2104862 R identified by similarity to SP:P12047; match to protein family HMM PF00206; match to protein family HMM TIGR00928; adenylosuccinate lyase complement(2103555..2104862) Acidithiobacillus ferrooxidans ATCC 23270 7135883 YP_002426748.1 CDS AFE_2357 NC_011761.1 2104859 2105992 R lipoprotein complement(2104859..2105992) Acidithiobacillus ferrooxidans ATCC 23270 7136882 YP_002426749.1 CDS dapA NC_011761.1 2106030 2106905 R identified by similarity to SP:P05640; match to protein family HMM PF00701; match to protein family HMM TIGR00674; dihydrodipicolinate synthase complement(2106030..2106905) Acidithiobacillus ferrooxidans ATCC 23270 7135524 YP_002426750.1 CDS AFE_2360 NC_011761.1 2107178 2107831 R identified by similarity to SP:P54176; match to protein family HMM PF03006; match to protein family HMM TIGR01065; hemolysin III family channel protein complement(2107178..2107831) Acidithiobacillus ferrooxidans ATCC 23270 7136026 YP_002426751.1 CDS AFE_2361 NC_011761.1 2107906 2109234 R identified by similarity to SP:Q46929; match to protein family HMM PF01476; match to protein family HMM PF01520; match to protein family HMM TIGR01409; N-acetylmuramoyl-L-alanine amidase complement(2107906..2109234) Acidithiobacillus ferrooxidans ATCC 23270 7136300 YP_002426752.1 CDS AFE_2362 NC_011761.1 2109320 2109754 R identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin complement(2109320..2109754) Acidithiobacillus ferrooxidans ATCC 23270 7135552 YP_002426753.1 CDS grxC NC_011761.1 2109785 2110069 R identified by similarity to SP:P37687; match to protein family HMM PF00462; match to protein family HMM TIGR02181; glutaredoxin 3 complement(2109785..2110069) Acidithiobacillus ferrooxidans ATCC 23270 7135987 YP_002426754.1 CDS AFE_2364 NC_011761.1 2110069 2110494 R identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein complement(2110069..2110494) Acidithiobacillus ferrooxidans ATCC 23270 7137107 YP_002426755.1 CDS AFE_2365 NC_011761.1 2110498 2110719 R identified by similarity to GB:AAN56110.1; hypothetical protein complement(2110498..2110719) Acidithiobacillus ferrooxidans ATCC 23270 7135440 YP_002426756.1 CDS AFE_2366 NC_011761.1 2110726 2114004 R identified by match to protein family HMM PF00873; transporter AcrB/AcrD/AcrF family complement(2110726..2114004) Acidithiobacillus ferrooxidans ATCC 23270 7135344 YP_002426757.1 CDS AFE_2367 NC_011761.1 2113997 2115079 R identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(2113997..2115079) Acidithiobacillus ferrooxidans ATCC 23270 7137022 YP_002426758.1 CDS AFE_2368 NC_011761.1 2115076 2116497 R identified by match to protein family HMM PF02321; outer membrane efflux protein complement(2115076..2116497) Acidithiobacillus ferrooxidans ATCC 23270 7136189 YP_002426759.1 CDS AFE_2369 NC_011761.1 2116745 2117047 R identified by match to protein family HMM PF01022; ArsR family transcriptional regulator complement(2116745..2117047) Acidithiobacillus ferrooxidans ATCC 23270 7137217 YP_002426760.1 CDS AFE_2371 NC_011761.1 2117462 2117701 R identified by glimmer; putative; hypothetical protein complement(2117462..2117701) Acidithiobacillus ferrooxidans ATCC 23270 7135843 YP_002426761.1 CDS AFE_2372 NC_011761.1 2117769 2119382 R identified by match to protein family HMM PF02384; match to protein family HMM TIGR00497; type I restriction-modification system, M subunit complement(2117769..2119382) Acidithiobacillus ferrooxidans ATCC 23270 7134070 YP_002426762.1 CDS AFE_2373 NC_011761.1 2119379 2119582 R identified by glimmer; putative; hypothetical protein complement(2119379..2119582) Acidithiobacillus ferrooxidans ATCC 23270 7137189 YP_002426763.1 CDS AFE_2374 NC_011761.1 2119579 2120757 R identified by similarity to SP:P17223; anticodon nuclease complement(2119579..2120757) Acidithiobacillus ferrooxidans ATCC 23270 7136666 YP_002426764.1 CDS AFE_2376 NC_011761.1 2120710 2120871 D identified by glimmer; putative; hypothetical protein 2120710..2120871 Acidithiobacillus ferrooxidans ATCC 23270 7136486 YP_002426765.1 CDS AFE_2375 NC_011761.1 2120849 2124013 R identified by match to protein family HMM PF00270; match to protein family HMM PF00271; ATP-dependent helicase, DEAD/DEAH box family complement(2120849..2124013) Acidithiobacillus ferrooxidans ATCC 23270 7134936 YP_002426766.1 CDS AFE_2377 NC_011761.1 2124010 2124798 R identified by glimmer; putative; hypothetical protein complement(2124010..2124798) Acidithiobacillus ferrooxidans ATCC 23270 7134016 YP_002426767.1 CDS AFE_2378 NC_011761.1 2124795 2125946 R identified by match to protein family HMM PF01420; type I restriction-modification system subunit S complement(2124795..2125946) Acidithiobacillus ferrooxidans ATCC 23270 7136185 YP_002426768.1 CDS AFE_2379 NC_011761.1 2126024 2126221 D identified by glimmer; putative; hypothetical protein 2126024..2126221 Acidithiobacillus ferrooxidans ATCC 23270 7134753 YP_002426769.1 CDS AFE_2380 NC_011761.1 2126416 2127030 R identified by similarity to GB:AAO78433.1; hypothetical protein complement(2126416..2127030) Acidithiobacillus ferrooxidans ATCC 23270 7135458 YP_002426770.1 CDS AFE_2381 NC_011761.1 2127023 2130121 R identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction-modification system, R subunit complement(2127023..2130121) Acidithiobacillus ferrooxidans ATCC 23270 7136690 YP_002426771.1 CDS AFE_2382 NC_011761.1 2130200 2130337 D identified by glimmer; putative; hypothetical protein 2130200..2130337 Acidithiobacillus ferrooxidans ATCC 23270 7135126 YP_002426772.1 CDS ubiD NC_011761.1 2130414 2131886 R identified by similarity to SP:P26615; match to protein family HMM PF01977; match to protein family HMM TIGR00148; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase complement(2130414..2131886) Acidithiobacillus ferrooxidans ATCC 23270 7136447 YP_002426773.1 CDS AFE_2384 NC_011761.1 2131911 2132783 R identified by similarity to PIR:A82245; hypothetical protein complement(2131911..2132783) Acidithiobacillus ferrooxidans ATCC 23270 7135619 YP_002426774.1 CDS AFE_2385 NC_011761.1 2132796 2133239 R identified by match to protein family HMM PF02036; SCP-2 sterol transfer family protein complement(2132796..2133239) Acidithiobacillus ferrooxidans ATCC 23270 7136947 YP_002426775.1 CDS AFE_2386 NC_011761.1 2133299 2134045 R identified by match to protein family HMM PF00899; HesA/MoeB/ThiF family protein complement(2133299..2134045) Acidithiobacillus ferrooxidans ATCC 23270 7135539 YP_002426776.1 CDS AFE_2387 NC_011761.1 2134045 2134815 R identified by match to protein family HMM PF01026; TatD family hydrolase complement(2134045..2134815) Acidithiobacillus ferrooxidans ATCC 23270 7134699 YP_002426777.1 CDS ubiH-2 NC_011761.1 2134993 2136222 D identified by similarity to SP:P25534; match to protein family HMM PF01494; match to protein family HMM TIGR01988; 2-octaprenyl-6-methoxyphenol hydroxylase 2134993..2136222 Acidithiobacillus ferrooxidans ATCC 23270 7135594 YP_002426778.1 CDS ubiH-1 NC_011761.1 2136212 2137399 D identified by similarity to SP:P25534; match to protein family HMM PF01266; match to protein family HMM PF01494; match to protein family HMM TIGR01988; 2-octaprenyl-6-methoxyphenol hydroxylase 2136212..2137399 Acidithiobacillus ferrooxidans ATCC 23270 7135540 YP_002426779.1 CDS AFE_2390 NC_011761.1 2137411 2137674 D identified by similarity to GB:AAQ61663.1; hypothetical protein 2137411..2137674 Acidithiobacillus ferrooxidans ATCC 23270 7136140 YP_002426780.1 CDS AFE_2392 NC_011761.1 2138641 2140485 D identified by glimmer; putative; hypothetical protein 2138641..2140485 Acidithiobacillus ferrooxidans ATCC 23270 7134675 YP_002426781.1 CDS AFE_2393 NC_011761.1 2140693 2141148 D identified by similarity to GB:AAB81643.1; ISAfe5, transposase orfA 2140693..2141148 Acidithiobacillus ferrooxidans ATCC 23270 7136083 YP_002426782.1 CDS AFE_2394 NC_011761.1 2141283 2141633 D identified by similarity to GB:AAB81642.1; ISAfe5, transposase orfB 2141283..2141633 Acidithiobacillus ferrooxidans ATCC 23270 7137259 YP_002426783.1 CDS AFE_2396 NC_011761.1 2143755 2143934 R identified by glimmer; putative; hypothetical protein complement(2143755..2143934) Acidithiobacillus ferrooxidans ATCC 23270 7136274 YP_002426784.1 CDS AFE_2397 NC_011761.1 2144157 2145401 D identified by match to protein family HMM PF00589; match to protein family HMM PF02899; site-specific recombinase, phage integrase family 2144157..2145401 Acidithiobacillus ferrooxidans ATCC 23270 7137265 YP_002426785.1 CDS AFE_2398 NC_011761.1 2145398 2146339 D identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family 2145398..2146339 Acidithiobacillus ferrooxidans ATCC 23270 7136996 YP_002426786.1 CDS AFE_2399 NC_011761.1 2146332 2147330 D identified by match to protein family HMM PF00589; site-specific recombinase, phage integrase family 2146332..2147330 Acidithiobacillus ferrooxidans ATCC 23270 7136266 YP_002426787.1 CDS AFE_2400 NC_011761.1 2147405 2148265 R identified by glimmer; putative; hypothetical protein complement(2147405..2148265) Acidithiobacillus ferrooxidans ATCC 23270 7136534 YP_002426788.1 CDS AFE_2401 NC_011761.1 2148399 2148947 R identified by glimmer; putative; hypothetical protein complement(2148399..2148947) Acidithiobacillus ferrooxidans ATCC 23270 7134681 YP_002426789.1 CDS AFE_2402 NC_011761.1 2148975 2149082 D identified by glimmer; putative; hypothetical protein 2148975..2149082 Acidithiobacillus ferrooxidans ATCC 23270 7134942 YP_002426790.1 CDS AFE_2405 NC_011761.1 2150798 2151298 D identified by glimmer; putative; hypothetical protein 2150798..2151298 Acidithiobacillus ferrooxidans ATCC 23270 7134178 YP_002426791.1 CDS AFE_2404 NC_011761.1 2151591 2151965 R identified by similarity to SP:P37246; transposase, degenerate complement(2151591..2151965) Acidithiobacillus ferrooxidans ATCC 23270 7134038 YP_002426792.1 CDS AFE_2406 NC_011761.1 2152275 2152379 R identified by glimmer; putative; hypothetical protein complement(2152275..2152379) Acidithiobacillus ferrooxidans ATCC 23270 7135188 YP_002426793.1 CDS AFE_2407 NC_011761.1 2152967 2154262 D identified by similarity to GB:AAN30751.1; hypothetical protein 2152967..2154262 Acidithiobacillus ferrooxidans ATCC 23270 7136789 YP_002426794.1 CDS AFE_2408 NC_011761.1 2154272 2156701 D identified by match to protein family HMM PF00270; match to protein family HMM PF01896; match to protein family HMM PF04851; DEAD/DEAH box helicase 2154272..2156701 Acidithiobacillus ferrooxidans ATCC 23270 7135882 YP_002426795.1 CDS AFE_2409 NC_011761.1 2156858 2157097 R identified by glimmer; putative; hypothetical protein complement(2156858..2157097) Acidithiobacillus ferrooxidans ATCC 23270 7136492 YP_002426796.1 CDS AFE_2410 NC_011761.1 2157238 2157735 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(2157238..2157735) Acidithiobacillus ferrooxidans ATCC 23270 7134843 YP_002426797.1 CDS AFE_2411 NC_011761.1 2157957 2158433 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(2157957..2158433) Acidithiobacillus ferrooxidans ATCC 23270 7134679 YP_002426798.1 CDS AFE_2412 NC_011761.1 2158510 2160636 R identified by match to protein family HMM PF00391; phosphoenolpyruvate-utilizing mobile domain-containing protein complement(2158510..2160636) Acidithiobacillus ferrooxidans ATCC 23270 7136750 YP_002426799.1 CDS AFE_2413 NC_011761.1 2160776 2161438 R identified by match to protein family HMM PF01695; transposase, degenerate complement(2160776..2161438) Acidithiobacillus ferrooxidans ATCC 23270 7136194 YP_002426800.1 CDS AFE_2414 NC_011761.1 2161717 2161998 D identified by similarity to GB:AAN70104.1; match to protein family HMM PF04365; hypothetical protein 2161717..2161998 Acidithiobacillus ferrooxidans ATCC 23270 7134212 YP_002426801.1 CDS AFE_2415 NC_011761.1 2161995 2162237 D identified by similarity to GB:AAO89577.1; hypothetical protein 2161995..2162237 Acidithiobacillus ferrooxidans ATCC 23270 7134841 YP_002426802.1 CDS AFE_2416 NC_011761.1 2163160 2163294 D identified by glimmer; putative; hypothetical protein 2163160..2163294 Acidithiobacillus ferrooxidans ATCC 23270 7136312 YP_002426803.1 CDS AFE_2417 NC_011761.1 2163294 2164091 D identified by glimmer; putative; hypothetical protein 2163294..2164091 Acidithiobacillus ferrooxidans ATCC 23270 7136772 YP_002426804.1 CDS AFE_2418 NC_011761.1 2164442 2164576 D identified by glimmer; putative; hypothetical protein 2164442..2164576 Acidithiobacillus ferrooxidans ATCC 23270 7134824 YP_002426805.1 CDS AFE_2419 NC_011761.1 2164763 2166238 R identified by match to protein family HMM PF01076; plasmid recombination enzyme complement(2164763..2166238) Acidithiobacillus ferrooxidans ATCC 23270 7137233 YP_002426806.1 CDS AFE_2420 NC_011761.1 2166470 2167471 R identified by match to protein family HMM PF01545; match to protein family HMM TIGR01297; cation diffusion facilitator family transporter complement(2166470..2167471) Acidithiobacillus ferrooxidans ATCC 23270 7137201 YP_002426807.1 CDS AFE_2421 NC_011761.1 2167571 2168047 D identified by match to protein family HMM PF00376; match to protein family HMM PF09278; match to protein family HMM TIGR02047; Cd(II)/Pb(II)-responsive transcriptional regulator 2167571..2168047 Acidithiobacillus ferrooxidans ATCC 23270 7136687 YP_002426808.1 CDS AFE_2422 NC_011761.1 2168060 2168644 R identified by match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein complement(2168060..2168644) Acidithiobacillus ferrooxidans ATCC 23270 7134482 YP_002426809.1 CDS AFE_2423 NC_011761.1 2168727 2169218 R identified by match to protein family HMM PF00401; match to protein family HMM PF02823; match to protein family HMM TIGR01216; ATP synthase F1 subunit epsilon complement(2168727..2169218) Acidithiobacillus ferrooxidans ATCC 23270 7134825 YP_002426810.1 CDS AFE_2424 NC_011761.1 2169343 2169969 R identified by match to protein family HMM PF01545; cation efflux permease complement(2169343..2169969) Acidithiobacillus ferrooxidans ATCC 23270 7135421 YP_002426811.1 CDS AFE_2425 NC_011761.1 2170031 2170357 D identified by glimmer; putative; hypothetical protein 2170031..2170357 Acidithiobacillus ferrooxidans ATCC 23270 7136216 YP_002426812.1 CDS AFE_2426 NC_011761.1 2170506 2170607 R identified by glimmer; putative; hypothetical protein complement(2170506..2170607) Acidithiobacillus ferrooxidans ATCC 23270 7135475 YP_002426813.1 CDS AFE_2427 NC_011761.1 2170663 2170827 R identified by glimmer; putative; hypothetical protein complement(2170663..2170827) Acidithiobacillus ferrooxidans ATCC 23270 7137241 YP_002426814.1 CDS AFE_2428 NC_011761.1 2170930 2171292 R identified by similarity to SP:P77214; heavy metal efflux system protein complement(2170930..2171292) Acidithiobacillus ferrooxidans ATCC 23270 7135659 YP_002426815.1 CDS AFE_2429 NC_011761.1 2171421 2172176 R identified by match to protein family HMM PF01292; [Ni/Fe] hydrogenase, b-type cytochrome subunit complement(2171421..2172176) Acidithiobacillus ferrooxidans ATCC 23270 7136701 YP_002426816.1 CDS AFE_2430 NC_011761.1 2172235 2172921 R identified by similarity to GB:BAB47830.1; match to protein family HMM PF01987; hypothetical protein complement(2172235..2172921) Acidithiobacillus ferrooxidans ATCC 23270 7134247 YP_002426817.1 CDS AFE_2431 NC_011761.1 2172992 2176105 R identified by match to protein family HMM PF00873; match to protein family HMM TIGR00914; CzcA family heavy metal efflux pump complement(2172992..2176105) Acidithiobacillus ferrooxidans ATCC 23270 7134583 YP_002426818.1 CDS AFE_2432 NC_011761.1 2176350 2177576 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISAfe3, transposase 2176350..2177576 Acidithiobacillus ferrooxidans ATCC 23270 7135386 YP_002426819.1 CDS AFE_2433 NC_011761.1 2177651 2179099 R identified by match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(2177651..2179099) Acidithiobacillus ferrooxidans ATCC 23270 7134315 YP_002426820.1 CDS AFE_2434 NC_011761.1 2179096 2180397 R identified by match to protein family HMM PF02321; outer membrane efflux protein complement(2179096..2180397) Acidithiobacillus ferrooxidans ATCC 23270 7135946 YP_002426821.1 CDS AFE_2435 NC_011761.1 2180499 2180849 R identified by glimmer; putative; hypothetical protein complement(2180499..2180849) Acidithiobacillus ferrooxidans ATCC 23270 7134642 YP_002426822.1 CDS AFE_2436 NC_011761.1 2180921 2181112 R identified by glimmer; putative; hypothetical protein complement(2180921..2181112) Acidithiobacillus ferrooxidans ATCC 23270 7134924 YP_002426823.1 CDS AFE_2437 NC_011761.1 2181098 2181352 D identified by similarity to GB:AAN70930.1; cyclopropane-fatty-acyl-phospholipid synthase 2181098..2181352 Acidithiobacillus ferrooxidans ATCC 23270 7136382 YP_002426824.1 CDS AFE_2438 NC_011761.1 2181531 2181815 D identified by similarity to GB:AAM25602.1; hypothetical protein 2181531..2181815 Acidithiobacillus ferrooxidans ATCC 23270 7135157 YP_002426825.1 CDS AFE_2439 NC_011761.1 2181955 2183979 D identified by similarity to SP:P05425; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase 2181955..2183979 Acidithiobacillus ferrooxidans ATCC 23270 7135913 YP_002426826.1 CDS AFE_2441 NC_011761.1 2184471 2184572 R identified by glimmer; putative; hypothetical protein complement(2184471..2184572) Acidithiobacillus ferrooxidans ATCC 23270 7136927 YP_002426827.1 CDS AFE_2442 NC_011761.1 2184586 2184894 R identified by glimmer; putative; hypothetical protein complement(2184586..2184894) Acidithiobacillus ferrooxidans ATCC 23270 7135208 YP_002426828.1 CDS AFE_2443 NC_011761.1 2185209 2185523 R transposase, degenerate complement(2185209..2185523) Acidithiobacillus ferrooxidans ATCC 23270 7136308 YP_002426829.1 CDS AFE_2444 NC_011761.1 2185425 2185814 D identified by glimmer; putative; hypothetical protein 2185425..2185814 Acidithiobacillus ferrooxidans ATCC 23270 7136724 YP_002426830.1 CDS AFE_2445 NC_011761.1 2185790 2186071 D identified by glimmer; putative; hypothetical protein 2185790..2186071 Acidithiobacillus ferrooxidans ATCC 23270 7135305 YP_002426831.1 CDS AFE_2447 NC_011761.1 2187708 2188103 D identified by similarity to GB:AAO07819.1; match to protein family HMM PF03625; hypothetical protein 2187708..2188103 Acidithiobacillus ferrooxidans ATCC 23270 7134024 YP_002426832.1 CDS AFE_2448 NC_011761.1 2188165 2188371 D identified by match to protein family HMM PF00403; heavy metal-binding protein 2188165..2188371 Acidithiobacillus ferrooxidans ATCC 23270 7136380 YP_002426833.1 CDS AFE_2449 NC_011761.1 2188376 2188615 D identified by similarity to PIR:B75601; match to protein family HMM PF00462; match to protein family HMM PF05768; hypothetical protein 2188376..2188615 Acidithiobacillus ferrooxidans ATCC 23270 7136335 YP_002426834.1 CDS AFE_2450 NC_011761.1 2188760 2189062 D identified by match to protein family HMM PF00034; cytochrome c family protein 2188760..2189062 Acidithiobacillus ferrooxidans ATCC 23270 7135249 YP_002426835.1 CDS AFE_2452 NC_011761.1 2189108 2189254 D identified by glimmer; putative; hypothetical protein 2189108..2189254 Acidithiobacillus ferrooxidans ATCC 23270 7136653 YP_002426836.1 CDS AFE_2451 NC_011761.1 2189251 2189424 R identified by glimmer; putative; hypothetical protein complement(2189251..2189424) Acidithiobacillus ferrooxidans ATCC 23270 7135071 YP_002426837.1 CDS AFE_2454 NC_011761.1 2190384 2191985 R identified by match to protein family HMM PF00999; match to protein family HMM TIGR00831; Na+/H+ antiporter complement(2190384..2191985) Acidithiobacillus ferrooxidans ATCC 23270 7135175 YP_002426838.1 CDS AFE_2455 NC_011761.1 2192106 2192372 R identified by glimmer; putative; hypothetical protein complement(2192106..2192372) Acidithiobacillus ferrooxidans ATCC 23270 7135021 YP_002426839.1 CDS AFE_2456 NC_011761.1 2192726 2192824 R identified by glimmer; putative; hypothetical protein complement(2192726..2192824) Acidithiobacillus ferrooxidans ATCC 23270 7135516 YP_002426840.1 CDS AFE_2457 NC_011761.1 2193131 2194750 R identified by match to protein family HMM PF00324; amino acid permease family protein complement(2193131..2194750) Acidithiobacillus ferrooxidans ATCC 23270 7134579 YP_002426841.1 CDS AFE_2458 NC_011761.1 2194775 2195188 R identified by glimmer; putative; hypothetical protein complement(2194775..2195188) Acidithiobacillus ferrooxidans ATCC 23270 7134852 YP_002426842.1 CDS AFE_2460 NC_011761.1 2195178 2195324 D identified by glimmer; putative; hypothetical protein 2195178..2195324 Acidithiobacillus ferrooxidans ATCC 23270 7134385 YP_002426843.1 CDS AFE_2459 NC_011761.1 2195260 2195619 R identified by glimmer; putative; hypothetical protein complement(2195260..2195619) Acidithiobacillus ferrooxidans ATCC 23270 7136051 YP_002426844.1 CDS AFE_2461 NC_011761.1 2195678 2195977 R identified by glimmer; putative; hypothetical protein complement(2195678..2195977) Acidithiobacillus ferrooxidans ATCC 23270 7134076 YP_002426845.1 CDS glnB-1 NC_011761.1 2195974 2196345 R identified by similarity to SP:P05826; match to protein family HMM PF00543; nitrogen regulatory protein P-II 1 complement(2195974..2196345) Acidithiobacillus ferrooxidans ATCC 23270 7137109 YP_002426846.1 CDS AFE_2463 NC_011761.1 2196403 2197593 R identified by glimmer; putative; hypothetical protein complement(2196403..2197593) Acidithiobacillus ferrooxidans ATCC 23270 7134437 YP_002426847.1 CDS proB-1 NC_011761.1 2197673 2198641 R identified by similarity to SP:P07005; match to protein family HMM PF00696; match to protein family HMM TIGR01027; glutamate 5-kinase complement(2197673..2198641) Acidithiobacillus ferrooxidans ATCC 23270 7137194 YP_002426848.1 CDS AFE_2465 NC_011761.1 2198706 2198888 R identified by glimmer; putative; hypothetical protein complement(2198706..2198888) Acidithiobacillus ferrooxidans ATCC 23270 7136324 YP_002426849.1 CDS AFE_2466 NC_011761.1 2198825 2200381 R identified by match to protein family HMM PF08443; hypothetical protein complement(2198825..2200381) Acidithiobacillus ferrooxidans ATCC 23270 7134673 YP_002426850.1 CDS AFE_2467 NC_011761.1 2200415 2200744 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(2200415..2200744) Acidithiobacillus ferrooxidans ATCC 23270 7134303 YP_002426851.1 CDS AFE_2468 NC_011761.1 2200795 2201127 D Assignment based on BLAST search at the ISFinder database, and proximity to other transposase ORFs.; ISAfe4, transposase orf1 2200795..2201127 Acidithiobacillus ferrooxidans ATCC 23270 7134769 YP_002426852.1 CDS AFE_2469 NC_011761.1 2201118 2201465 D identified by match to protein family HMM PF05717; ISAfe4, transposase orf2 2201118..2201465 Acidithiobacillus ferrooxidans ATCC 23270 7136479 YP_002426853.1 CDS AFE_2470 NC_011761.1 2201515 2203152 D identified by match to protein family HMM PF03050; ISAfe4, transposase orf3 2201515..2203152 Acidithiobacillus ferrooxidans ATCC 23270 7135083 YP_002426854.1 CDS AFE_2471 NC_011761.1 2203665 2204243 R identified by match to protein family HMM PF00216; DNA-binding protein HU family protein complement(2203665..2204243) Acidithiobacillus ferrooxidans ATCC 23270 7136707 YP_002426855.1 CDS AFE_2472 NC_011761.1 2204258 2204776 R identified by glimmer; putative; hypothetical protein complement(2204258..2204776) Acidithiobacillus ferrooxidans ATCC 23270 7135281 YP_002426856.1 CDS kdpC-1 NC_011761.1 2204733 2205356 R identified by similarity to SP:P03961; match to protein family HMM PF02669; match to protein family HMM TIGR00681; K+-transporting ATPase subunit C complement(2204733..2205356) Acidithiobacillus ferrooxidans ATCC 23270 7135186 YP_002426857.1 CDS kdpB-1 NC_011761.1 2205369 2207438 R identified by similarity to SP:P03960; match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01497; K+-transporting ATPase subunit B complement(2205369..2207438) Acidithiobacillus ferrooxidans ATCC 23270 7136841 YP_002426858.1 CDS kdpA-2 NC_011761.1 2207452 2209203 R identified by similarity to SP:P03959; match to protein family HMM PF03814; match to protein family HMM TIGR00680; K+-transporting ATPase, A subunit complement(2207452..2209203) Acidithiobacillus ferrooxidans ATCC 23270 7134593 YP_002426859.1 CDS kdpF-1 NC_011761.1 2209200 2209292 R identified by match to protein family HMM TIGR02115; K+-transporting ATPase subunit F complement(2209200..2209292) Acidithiobacillus ferrooxidans ATCC 23270 7134155 YP_002426860.1 CDS kdpA-1 NC_011761.1 2209589 2211340 R identified by similarity to SP:P03959; match to protein family HMM PF03814; match to protein family HMM TIGR00680; K+-transporting ATPase, A subunit complement(2209589..2211340) Acidithiobacillus ferrooxidans ATCC 23270 7134472 YP_002426861.1 CDS AFE_2478 NC_011761.1 2211614 2211784 R identified by glimmer; putative; hypothetical protein complement(2211614..2211784) Acidithiobacillus ferrooxidans ATCC 23270 7135142 YP_002426862.1 CDS merC NC_011761.1 2212065 2212499 D identified by similarity to SP:P22905; match to protein family HMM PF03203; mercury transport protein MerC 2212065..2212499 Acidithiobacillus ferrooxidans ATCC 23270 7135529 YP_002426863.1 CDS merA NC_011761.1 2212525 2214168 D identified by similarity to SP:P17239; match to protein family HMM PF00070; match to protein family HMM PF00403; match to protein family HMM PF01266; match to protein family HMM PF02852; match to protein family HMM PF07992; match to protein family HMM TIGR02053; mercuric reductase 2212525..2214168 Acidithiobacillus ferrooxidans ATCC 23270 7135151 YP_002426864.1 CDS cga NC_011761.1 2214225 2216270 D identified by match to protein family HMM PF00723; match to protein family HMM PF09137; glucan 1,4-alpha-glucosidase 2214225..2216270 Acidithiobacillus ferrooxidans ATCC 23270 7135439 YP_002426865.1 CDS AFE_2484 NC_011761.1 2216995 2217240 D identified by glimmer; putative; hypothetical protein 2216995..2217240 Acidithiobacillus ferrooxidans ATCC 23270 7134431 YP_002426866.1 CDS AFE_2485 NC_011761.1 2217265 2217444 D transposase, degenerate 2217265..2217444 Acidithiobacillus ferrooxidans ATCC 23270 7136991 YP_002426867.1 CDS AFE_2486 NC_011761.1 2217632 2218063 R identified by glimmer; putative; hypothetical protein complement(2217632..2218063) Acidithiobacillus ferrooxidans ATCC 23270 7136637 YP_002426868.1 CDS AFE_2487 NC_011761.1 2218065 2218391 R identified by glimmer; putative; hypothetical protein complement(2218065..2218391) Acidithiobacillus ferrooxidans ATCC 23270 7137193 YP_002426869.1 CDS AFE_2488 NC_011761.1 2218391 2218672 R identified by glimmer; putative; hypothetical protein complement(2218391..2218672) Acidithiobacillus ferrooxidans ATCC 23270 7136640 YP_002426870.1 CDS AFE_2489 NC_011761.1 2218923 2219186 D identified by glimmer; putative; hypothetical protein 2218923..2219186 Acidithiobacillus ferrooxidans ATCC 23270 7136056 YP_002426871.1 CDS AFE_2490 NC_011761.1 2219238 2219465 D identified by glimmer; putative; hypothetical protein 2219238..2219465 Acidithiobacillus ferrooxidans ATCC 23270 7134572 YP_002426872.1 CDS AFE_2491 NC_011761.1 2220122 2220814 D lipoprotein 2220122..2220814 Acidithiobacillus ferrooxidans ATCC 23270 7136878 YP_002426873.1 CDS AFE_2492 NC_011761.1 2221235 2221537 R identified by glimmer; putative; hypothetical protein complement(2221235..2221537) Acidithiobacillus ferrooxidans ATCC 23270 7134269 YP_002426874.1 CDS AFE_2493 NC_011761.1 2221530 2221739 R identified by glimmer; putative; hypothetical protein complement(2221530..2221739) Acidithiobacillus ferrooxidans ATCC 23270 7134774 YP_002426875.1 CDS AFE_2494 NC_011761.1 2221801 2222160 R identified by similarity to GB:AAQ59662.1; hypothetical protein complement(2221801..2222160) Acidithiobacillus ferrooxidans ATCC 23270 7134620 YP_002426876.1 CDS AFE_2495 NC_011761.1 2222232 2222498 R identified by glimmer; putative; hypothetical protein complement(2222232..2222498) Acidithiobacillus ferrooxidans ATCC 23270 7134272 YP_002426877.1 CDS AFE_2496 NC_011761.1 2222583 2222993 D identified by glimmer; putative; hypothetical protein 2222583..2222993 Acidithiobacillus ferrooxidans ATCC 23270 7136843 YP_002426878.1 CDS AFE_2497 NC_011761.1 2222990 2223304 D identified by glimmer; putative; hypothetical protein 2222990..2223304 Acidithiobacillus ferrooxidans ATCC 23270 7134160 YP_002426879.1 CDS AFE_2498 NC_011761.1 2223385 2224002 R identified by glimmer; putative; hypothetical protein complement(2223385..2224002) Acidithiobacillus ferrooxidans ATCC 23270 7135521 YP_002426880.1 CDS AFE_2499 NC_011761.1 2224050 2224205 R lipoprotein complement(2224050..2224205) Acidithiobacillus ferrooxidans ATCC 23270 7135530 YP_002426881.1 CDS AFE_2500 NC_011761.1 2224256 2224408 R identified by glimmer; putative; hypothetical protein complement(2224256..2224408) Acidithiobacillus ferrooxidans ATCC 23270 7134970 YP_002426882.1 CDS AFE_2501 NC_011761.1 2224447 2224860 D identified by glimmer; putative; hypothetical protein 2224447..2224860 Acidithiobacillus ferrooxidans ATCC 23270 7135116 YP_002426883.1 CDS AFE_2502 NC_011761.1 2225821 2227266 R identified by similarity to GB:AAO53608.1; hypothetical protein complement(2225821..2227266) Acidithiobacillus ferrooxidans ATCC 23270 7134163 YP_002426884.1 CDS AFE_2503 NC_011761.1 2227266 2228294 R identified by similarity to GB:AAO53609.1; hypothetical protein complement(2227266..2228294) Acidithiobacillus ferrooxidans ATCC 23270 7134457 YP_002426885.1 CDS AFE_2504 NC_011761.1 2228357 2229241 R Structure resembles Tn7; identified by similarity to SP:P05846; match to protein family HMM PF05621; transposon transposition helper protein C complement(2228357..2229241) Acidithiobacillus ferrooxidans ATCC 23270 7134478 YP_002426886.1 CDS AFE_2505 NC_011761.1 2229241 2231121 R Structure resembles Tn7; identified by similarity to SP:P13989; match to protein family HMM PF00665; transposon transposition protein B complement(2229241..2231121) Acidithiobacillus ferrooxidans ATCC 23270 7137010 YP_002426887.1 CDS AFE_2506 NC_011761.1 2231114 2231803 R Structure resembles Tn7; identified by match to protein family HMM PF08721; match to protein family HMM PF08722; transposon transposase A complement(2231114..2231803) Acidithiobacillus ferrooxidans ATCC 23270 7136768 YP_002426888.1 CDS AFE_2508 NC_011761.1 2232729 2233106 R identified by similarity to PIR:C70336; hypothetical protein complement(2232729..2233106) Acidithiobacillus ferrooxidans ATCC 23270 7134733 YP_002426889.1 CDS AFE_2509 NC_011761.1 2233348 2233830 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(2233348..2233830) Acidithiobacillus ferrooxidans ATCC 23270 7136699 YP_002426890.1 CDS AFE_2510 NC_011761.1 2233876 2234001 R identified by glimmer; putative; hypothetical protein complement(2233876..2234001) Acidithiobacillus ferrooxidans ATCC 23270 7135709 YP_002426891.1 CDS AFE_2511 NC_011761.1 2234077 2234232 D identified by glimmer; putative; hypothetical protein 2234077..2234232 Acidithiobacillus ferrooxidans ATCC 23270 7135553 YP_002426892.1 CDS AFE_2512 NC_011761.1 2234434 2234553 R identified by glimmer; putative; hypothetical protein complement(2234434..2234553) Acidithiobacillus ferrooxidans ATCC 23270 7134741 YP_002426893.1 CDS AFE_2513 NC_011761.1 2234644 2235168 R identified by match to protein family HMM PF08238; hypothetical protein complement(2234644..2235168) Acidithiobacillus ferrooxidans ATCC 23270 7136141 YP_002426894.1 CDS prfC NC_011761.1 2235196 2236815 R stimulates the release of release factors 1 and 2 from the ribosome after hydrolysis of the ester bond in peptidyl-tRNA has occurred; GDP/GTP-binding protein; peptide chain release factor 3 complement(2235196..2236815) Acidithiobacillus ferrooxidans ATCC 23270 7136439 YP_002426895.1 CDS rimI NC_011761.1 2236822 2237298 R identified by similarity to SP:P09453; match to protein family HMM PF00583; match to protein family HMM TIGR01575; ribosomal-protein-alanine acetyltransferase complement(2236822..2237298) Acidithiobacillus ferrooxidans ATCC 23270 7137216 YP_002426896.1 CDS AFE_2516 NC_011761.1 2237300 2237968 R identified by match to protein family HMM PF00814; hypothetical protein complement(2237300..2237968) Acidithiobacillus ferrooxidans ATCC 23270 7134238 YP_002426897.1 CDS AFE_2517 NC_011761.1 2237968 2239893 R ATP-dependent helicase, DEXD family complement(2237968..2239893) Acidithiobacillus ferrooxidans ATCC 23270 7136270 YP_002426898.1 CDS AFE_2519 NC_011761.1 2239963 2240325 D identified by glimmer; putative; hypothetical protein 2239963..2240325 Acidithiobacillus ferrooxidans ATCC 23270 7135428 YP_002426899.1 CDS AFE_2518 NC_011761.1 2240322 2240429 R identified by glimmer; putative; hypothetical protein complement(2240322..2240429) Acidithiobacillus ferrooxidans ATCC 23270 7134656 YP_002426900.1 CDS AFE_2520 NC_011761.1 2240538 2241635 R identified by match to protein family HMM PF00877; NLP/P60 family protein complement(2240538..2241635) Acidithiobacillus ferrooxidans ATCC 23270 7135791 YP_002426901.1 CDS AFE_2521 NC_011761.1 2241618 2241725 D identified by glimmer; putative; hypothetical protein 2241618..2241725 Acidithiobacillus ferrooxidans ATCC 23270 7135143 YP_002426902.1 CDS AFE_2522 NC_011761.1 2242136 2243392 D identified by match to protein family HMM PF04966; carbohydrate-selective porin, OprB family 2242136..2243392 Acidithiobacillus ferrooxidans ATCC 23270 7134786 YP_002426903.1 CDS AFE_2523 NC_011761.1 2243425 2243712 D identified by match to protein family HMM PF04023; feoA family protein 2243425..2243712 Acidithiobacillus ferrooxidans ATCC 23270 7135686 YP_002426904.1 CDS feoB NC_011761.1 2243757 2246057 D identified by match to protein family HMM PF01926; match to protein family HMM PF02421; match to protein family HMM PF07664; match to protein family HMM PF07670; match to protein family HMM TIGR00231; match to protein family HMM TIGR00437; ferrous iron transport protein B 2243757..2246057 Acidithiobacillus ferrooxidans ATCC 23270 7137012 YP_002426905.1 CDS AFE_2525 NC_011761.1 2246054 2246353 D identified by glimmer; putative; hypothetical protein 2246054..2246353 Acidithiobacillus ferrooxidans ATCC 23270 7137279 YP_002426906.1 CDS AFE_2526 NC_011761.1 2246451 2247323 D identified by match to protein family HMM PF00795; match to protein family HMM TIGR03381; hydrolase 2246451..2247323 Acidithiobacillus ferrooxidans ATCC 23270 7135872 YP_002426907.1 CDS AFE_2528 NC_011761.1 2247316 2248068 D identified by match to protein family HMM PF00117; match to protein family HMM PF07722; glutamine amidotransferase 2247316..2248068 Acidithiobacillus ferrooxidans ATCC 23270 7134632 YP_002426908.1 CDS AFE_2527 NC_011761.1 2248065 2248712 R identified by similarity to GB:AAN66167.1; match to protein family HMM PF09335; DedA family membrane protein complement(2248065..2248712) Acidithiobacillus ferrooxidans ATCC 23270 7136831 YP_002426909.1 CDS AFE_2529 NC_011761.1 2248744 2249100 R identified by glimmer; putative; hypothetical protein complement(2248744..2249100) Acidithiobacillus ferrooxidans ATCC 23270 7136503 YP_002426910.1 CDS AFE_2530 NC_011761.1 2249097 2249849 R identified by similarity to GB:AAQ61408.1; hypothetical protein complement(2249097..2249849) Acidithiobacillus ferrooxidans ATCC 23270 7135464 YP_002426911.1 CDS AFE_2531 NC_011761.1 2249851 2250777 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(2249851..2250777) Acidithiobacillus ferrooxidans ATCC 23270 7136696 YP_002426912.1 CDS AFE_2532 NC_011761.1 2250862 2251464 D identified by glimmer; putative; hypothetical protein 2250862..2251464 Acidithiobacillus ferrooxidans ATCC 23270 7135677 YP_002426913.1 CDS AFE_2533 NC_011761.1 2251486 2252631 R identified by match to protein family HMM PF00248; oxidoreductase, aldo/keto reductase family complement(2251486..2252631) Acidithiobacillus ferrooxidans ATCC 23270 7134055 YP_002426914.1 CDS AFE_2534 NC_011761.1 2252628 2253794 R identified by match to protein family HMM PF00850; histone deacetylase family protein complement(2252628..2253794) Acidithiobacillus ferrooxidans ATCC 23270 7136865 YP_002426915.1 CDS AFE_2535 NC_011761.1 2253839 2256256 R von Willebrand factor type A domain-containing protein complement(2253839..2256256) Acidithiobacillus ferrooxidans ATCC 23270 7137294 YP_002426916.1 CDS AFE_2536 NC_011761.1 2256344 2257174 R identified by similarity to SP:Q02441; similarity to SP:Q51858; match to protein family HMM PF07728; match to protein family HMM PF08406; CbbQ/NirQ/NorQ/GpvN family protein complement(2256344..2257174) Acidithiobacillus ferrooxidans ATCC 23270 7136574 YP_002426917.1 CDS AFE_2537 NC_011761.1 2257171 2257572 R identified by glimmer; putative; hypothetical protein complement(2257171..2257572) Acidithiobacillus ferrooxidans ATCC 23270 7134760 YP_002426918.1 CDS AFE_2538 NC_011761.1 2257672 2258040 R identified by glimmer; putative; hypothetical protein complement(2257672..2258040) Acidithiobacillus ferrooxidans ATCC 23270 7134522 YP_002426919.1 CDS AFE_2539 NC_011761.1 2258077 2258436 R identified by glimmer; putative; hypothetical protein complement(2258077..2258436) Acidithiobacillus ferrooxidans ATCC 23270 7134149 YP_002426920.1 CDS AFE_2540 NC_011761.1 2258510 2259421 R identified by match to protein family HMM PF03099; biotin/lipoate A/B protein ligase family protein complement(2258510..2259421) Acidithiobacillus ferrooxidans ATCC 23270 7136853 YP_002426921.1 CDS AFE_2541 NC_011761.1 2259522 2259935 R identified by glimmer; putative; hypothetical protein complement(2259522..2259935) Acidithiobacillus ferrooxidans ATCC 23270 7135601 YP_002426922.1 CDS AFE_2542 NC_011761.1 2260062 2261405 R identified by match to protein family HMM PF03349; match to protein family HMM TIGR03304; OMPP1/FadL/TodX family outer membrane protein complement(2260062..2261405) Acidithiobacillus ferrooxidans ATCC 23270 7134251 YP_002426923.1 CDS AFE_2543 NC_011761.1 2261618 2262754 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(2261618..2262754) Acidithiobacillus ferrooxidans ATCC 23270 7134937 YP_002426924.1 CDS AFE_2544 NC_011761.1 2262779 2263840 R identified by match to protein family HMM PF01494; match to protein family HMM PF05834; match to protein family HMM TIGR02032; geranylgeranyl reductase complement(2262779..2263840) Acidithiobacillus ferrooxidans ATCC 23270 7137222 YP_002426925.1 CDS AFE_2545 NC_011761.1 2263837 2264907 R identified by similarity to PIR:C70441; match to protein family HMM PF03099; lipoate-protein ligase A complement(2263837..2264907) Acidithiobacillus ferrooxidans ATCC 23270 7137195 YP_002426926.1 CDS AFE_2546 NC_011761.1 2264956 2266089 R identified by match to protein family HMM PF04055; radical SAM domain-containing protein complement(2264956..2266089) Acidithiobacillus ferrooxidans ATCC 23270 7134358 YP_002426927.1 CDS AFE_2547 NC_011761.1 2266162 2266599 R identified by similarity to SP:P23884; match to protein family HMM PF01597; glycine cleavage system H protein complement(2266162..2266599) Acidithiobacillus ferrooxidans ATCC 23270 7135217 YP_002426928.1 CDS AFE_2548 NC_011761.1 2266655 2267053 R identified by similarity to PIR:A83048; hypothetical protein complement(2266655..2267053) Acidithiobacillus ferrooxidans ATCC 23270 7134599 YP_002426929.1 CDS AFE_2549 NC_011761.1 2267050 2267496 R identified by similarity to SP:P23884; match to protein family HMM PF01597; glycine cleavage system protein H complement(2267050..2267496) Acidithiobacillus ferrooxidans ATCC 23270 7134201 YP_002426930.1 CDS sdhC NC_011761.1 2267565 2268476 R identified by similarity to PIR:T50538; match to protein family HMM PF02754; succinate dehydrogenase/fumarate reductase, C subunit complement(2267565..2268476) Acidithiobacillus ferrooxidans ATCC 23270 7137182 YP_002426931.1 CDS AFE_2551 NC_011761.1 2268469 2269188 R iron-sulfur cluster-binding protein complement(2268469..2269188) Acidithiobacillus ferrooxidans ATCC 23270 7136102 YP_002426932.1 CDS AFE_2552 NC_011761.1 2269212 2270063 R identified by similarity to PIR:H70335; hypothetical protein complement(2269212..2270063) Acidithiobacillus ferrooxidans ATCC 23270 7134382 YP_002426933.1 CDS AFE_2553 NC_011761.1 2270020 2271075 R identified by similarity to PIR:G70335; match to protein family HMM PF00070; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase complement(2270020..2271075) Acidithiobacillus ferrooxidans ATCC 23270 7135192 YP_002426934.1 CDS AFE_2554 NC_011761.1 2271088 2272431 R identified by similarity to PIR:H90265; match to protein family HMM PF02754; heterodisulfide reductase subunit B complement(2271088..2272431) Acidithiobacillus ferrooxidans ATCC 23270 7134541 YP_002426935.1 CDS AFE_2555 NC_011761.1 2272442 2273128 R identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein complement(2272442..2273128) Acidithiobacillus ferrooxidans ATCC 23270 7134622 YP_002426936.1 CDS AFE_2556 NC_011761.1 2273192 2273662 R identified by similarity to GB:AAM72097.1; hypothetical protein complement(2273192..2273662) Acidithiobacillus ferrooxidans ATCC 23270 7134182 YP_002426937.1 CDS AFE_2557 NC_011761.1 2273706 2273936 R identified by similarity to GB:CAD85318.1; match to protein family HMM PF01206; hypothetical protein complement(2273706..2273936) Acidithiobacillus ferrooxidans ATCC 23270 7135336 YP_002426938.1 CDS AFE_2558 NC_011761.1 2274060 2274389 R identified by match to protein family HMM PF00581; rhodanese-like domain-containing protein complement(2274060..2274389) Acidithiobacillus ferrooxidans ATCC 23270 7134123 YP_002426939.1 CDS moaA NC_011761.1 2274450 2275478 R identified by similarity to SP:Q44118; match to protein family HMM PF04055; match to protein family HMM PF06463; match to protein family HMM TIGR02666; molybdenum cofactor biosynthesis protein A complement(2274450..2275478) Acidithiobacillus ferrooxidans ATCC 23270 7135020 YP_002426940.1 CDS AFE_2560 NC_011761.1 2275749 2276054 D identified by glimmer; putative; hypothetical protein 2275749..2276054 Acidithiobacillus ferrooxidans ATCC 23270 7135118 YP_002426941.1 CDS moaC NC_011761.1 2276058 2276567 R identified by similarity to SP:P30747; match to protein family HMM PF01967; match to protein family HMM TIGR00581; molybdenum cofactor biosynthesis protein C complement(2276058..2276567) Acidithiobacillus ferrooxidans ATCC 23270 7134345 YP_002426942.1 CDS mreB NC_011761.1 2276822 2277868 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 2276822..2277868 Acidithiobacillus ferrooxidans ATCC 23270 7136506 YP_002426943.1 CDS mreC NC_011761.1 2277892 2278731 D identified by match to protein family HMM PF04085; match to protein family HMM TIGR00219; rod shape-determining protein MreC 2277892..2278731 Acidithiobacillus ferrooxidans ATCC 23270 7134438 YP_002426944.1 CDS AFE_2564 NC_011761.1 2278728 2279204 D identified by similarity to SP:P16927; match to protein family HMM TIGR03426; rod shape-determining protein MreD 2278728..2279204 Acidithiobacillus ferrooxidans ATCC 23270 7136797 YP_002426945.1 CDS mrdA NC_011761.1 2279201 2281009 D identified by similarity to SP:P08150; match to protein family HMM PF00905; match to protein family HMM PF03717; match to protein family HMM TIGR03423; penicillin-binding protein 2 2279201..2281009 Acidithiobacillus ferrooxidans ATCC 23270 7134533 YP_002426946.1 CDS rodA NC_011761.1 2281006 2282217 D identified by similarity to SP:P15035; match to protein family HMM PF01098; match to protein family HMM TIGR02210; rod shape-determining protein RodA 2281006..2282217 Acidithiobacillus ferrooxidans ATCC 23270 7135185 YP_002426947.1 CDS AFE_2567 NC_011761.1 2282251 2283417 D identified by similarity to SP:P04287; match to protein family HMM PF00768; match to protein family HMM PF07943; D-alanyl-D-alanine carboxypeptidase 2282251..2283417 Acidithiobacillus ferrooxidans ATCC 23270 7134134 YP_002426948.1 CDS AFE_2568 NC_011761.1 2283480 2283962 D identified by glimmer; putative; hypothetical protein 2283480..2283962 Acidithiobacillus ferrooxidans ATCC 23270 7135953 YP_002426949.1 CDS lipB NC_011761.1 2283973 2284611 D identified by similarity to SP:P30976; match to protein family HMM PF03099; match to protein family HMM TIGR00214; lipoate-protein ligase B 2283973..2284611 Acidithiobacillus ferrooxidans ATCC 23270 7134089 YP_002426950.1 CDS lipA NC_011761.1 2284614 2285567 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 2284614..2285567 Acidithiobacillus ferrooxidans ATCC 23270 7136876 YP_002426951.1 CDS AFE_2571 NC_011761.1 2285582 2286382 D identified by similarity to GB:AAO58238.1; match to protein family HMM PF02698; hypothetical protein 2285582..2286382 Acidithiobacillus ferrooxidans ATCC 23270 7136820 YP_002426952.1 CDS AFE_2572 NC_011761.1 2286413 2287459 R identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein complement(2286413..2287459) Acidithiobacillus ferrooxidans ATCC 23270 7134674 YP_002426953.1 CDS AFE_2573 NC_011761.1 2287612 2288043 D identified by glimmer; putative; hypothetical protein 2287612..2288043 Acidithiobacillus ferrooxidans ATCC 23270 7134617 YP_002426954.1 CDS AFE_2574 NC_011761.1 2288126 2289598 D identified by similarity to PIR:E81830; hypothetical protein 2288126..2289598 Acidithiobacillus ferrooxidans ATCC 23270 7135756 YP_002426955.1 CDS AFE_2575 NC_011761.1 2289608 2290777 D identified by similarity to GB:AAD20272.1; hypothetical protein 2289608..2290777 Acidithiobacillus ferrooxidans ATCC 23270 7136369 YP_002426956.1 CDS AFE_2576 NC_011761.1 2290837 2291403 D identified by match to protein family HMM PF03029; match to protein family HMM TIGR00231; small GTP-binding protein 2290837..2291403 Acidithiobacillus ferrooxidans ATCC 23270 7136339 YP_002426957.1 CDS AFE_2577 NC_011761.1 2291400 2292038 D identified by similarity to PIR:A81195; hypothetical protein 2291400..2292038 Acidithiobacillus ferrooxidans ATCC 23270 7137226 YP_002426958.1 CDS AFE_2578 NC_011761.1 2292084 2292446 D identified by match to protein family HMM PF03259; roadblock/LC7 domain-containing protein 2292084..2292446 Acidithiobacillus ferrooxidans ATCC 23270 7135387 YP_002426959.1 CDS AFE_2579 NC_011761.1 2292458 2292586 R identified by glimmer; putative; hypothetical protein complement(2292458..2292586) Acidithiobacillus ferrooxidans ATCC 23270 7135942 YP_002426960.1 CDS glyQ NC_011761.1 2292536 2293420 D glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha 2292536..2293420 Acidithiobacillus ferrooxidans ATCC 23270 7134663 YP_002426961.1 CDS glyS NC_011761.1 2293407 2295491 D identified by similarity to SP:P00961; match to protein family HMM PF02092; match to protein family HMM PF05746; match to protein family HMM TIGR00211; glycyl-tRNA synthetase subunit beta 2293407..2295491 Acidithiobacillus ferrooxidans ATCC 23270 7135817 YP_002426962.1 CDS AFE_2582 NC_011761.1 2295491 2296030 D identified by similarity to GB:AAO91485.1; match to protein family HMM TIGR01656; match to protein family HMM TIGR01662; histidinol-phosphate phosphatase domain-containing protein 2295491..2296030 Acidithiobacillus ferrooxidans ATCC 23270 7136302 YP_002426963.1 CDS AFE_2584 NC_011761.1 2296027 2296755 D identified by match to protein family HMM PF01553; acyltransferase family protein 2296027..2296755 Acidithiobacillus ferrooxidans ATCC 23270 7136090 YP_002426964.1 CDS AFE_2583 NC_011761.1 2296703 2297611 R identified by similarity to SP:P17116; match to protein family HMM PF02655; match to protein family HMM PF08443; match to protein family HMM TIGR00768; alpha-L-glutamate ligase complement(2296703..2297611) Acidithiobacillus ferrooxidans ATCC 23270 7134812 YP_002426965.1 CDS AFE_2585 NC_011761.1 2297614 2297934 R identified by glimmer; putative; hypothetical protein complement(2297614..2297934) Acidithiobacillus ferrooxidans ATCC 23270 7137050 YP_002426966.1 CDS AFE_2586 NC_011761.1 2298112 2299464 D identified by similarity to PIR:H90265; match to protein family HMM PF02754; heterodisulfide reductase subunit B 2298112..2299464 Acidithiobacillus ferrooxidans ATCC 23270 7136622 YP_002426967.1 CDS AFE_2587 NC_011761.1 2299471 2299944 D identified by glimmer; putative; hypothetical protein 2299471..2299944 Acidithiobacillus ferrooxidans ATCC 23270 7137011 YP_002426968.1 CDS AFE_2588 NC_011761.1 2300182 2300883 D identified by similarity to GB:CAE33726.1; match to protein family HMM PF02677; hypothetical protein 2300182..2300883 Acidithiobacillus ferrooxidans ATCC 23270 7136109 YP_002426969.1 CDS ampD NC_011761.1 2301397 2301951 R identified by similarity to SP:P13016; match to protein family HMM PF01510; N-acetyl-anhydromuranmyl-L-alanine amidase complement(2301397..2301951) Acidithiobacillus ferrooxidans ATCC 23270 7134715 YP_002426970.1 CDS AFE_2590 NC_011761.1 2301948 2302283 R identified by similarity to SP:P52229; thioredoxin complement(2301948..2302283) Acidithiobacillus ferrooxidans ATCC 23270 7136924 YP_002426971.1 CDS AFE_2591 NC_011761.1 2302544 2302768 R identified by glimmer; putative; hypothetical protein complement(2302544..2302768) Acidithiobacillus ferrooxidans ATCC 23270 7134240 YP_002426972.1 CDS AFE_2592 NC_011761.1 2302761 2302922 R identified by glimmer; putative; hypothetical protein complement(2302761..2302922) Acidithiobacillus ferrooxidans ATCC 23270 7134455 YP_002426973.1 CDS AFE_2593 NC_011761.1 2302879 2303298 R identified by glimmer; putative; hypothetical protein complement(2302879..2303298) Acidithiobacillus ferrooxidans ATCC 23270 7136069 YP_002426974.1 CDS gst NC_011761.1 2303356 2303970 R identified by similarity to GB:CAB57289.1; match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase complement(2303356..2303970) Acidithiobacillus ferrooxidans ATCC 23270 7134219 YP_002426975.1 CDS AFE_2595 NC_011761.1 2304199 2304573 D identified by match to protein family HMM PF01638; transcriptional regulator 2304199..2304573 Acidithiobacillus ferrooxidans ATCC 23270 7136263 YP_002426976.1 CDS leuA-1 NC_011761.1 2304658 2306199 R identified by match to protein family HMM PF00682; match to protein family HMM PF08502; match to protein family HMM TIGR00973; 2-isopropylmalate synthase complement(2304658..2306199) Acidithiobacillus ferrooxidans ATCC 23270 7135204 YP_002426977.1 CDS AFE_2597 NC_011761.1 2306274 2307593 R identified by match to protein family HMM PF00004; match to protein family HMM PF00158; match to protein family HMM PF07728; sigma-54 dependent transcriptional regulator complement(2306274..2307593) Acidithiobacillus ferrooxidans ATCC 23270 7135555 YP_002426978.1 CDS AFE_2598 NC_011761.1 2307809 2307919 D identified by glimmer; putative; hypothetical protein 2307809..2307919 Acidithiobacillus ferrooxidans ATCC 23270 7136645 YP_002426979.1 CDS AFE_2599 NC_011761.1 2307992 2308378 D identified by similarity to PIR:C69319; hypothetical protein 2307992..2308378 Acidithiobacillus ferrooxidans ATCC 23270 7135269 YP_002426980.1 CDS AFE_2600 NC_011761.1 2308422 2308652 D identified by similarity to SP:O29695; match to protein family HMM PF01206; hypothetical protein 2308422..2308652 Acidithiobacillus ferrooxidans ATCC 23270 7134298 YP_002426981.1 CDS AFE_2601 NC_011761.1 2308695 2309834 D identified by similarity to SP:Q9R112; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 2308695..2309834 Acidithiobacillus ferrooxidans ATCC 23270 7135172 YP_002426982.1 CDS AFE_2602 NC_011761.1 2310568 2310849 R identified by glimmer; putative; hypothetical protein complement(2310568..2310849) Acidithiobacillus ferrooxidans ATCC 23270 7134644 YP_002426983.1 CDS AFE_2603 NC_011761.1 2310953 2311564 D identified by similarity to PIR:H83045; match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein 2310953..2311564 Acidithiobacillus ferrooxidans ATCC 23270 7136869 YP_002426984.1 CDS AFE_2604 NC_011761.1 2311933 2312856 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2311933..2312856 Acidithiobacillus ferrooxidans ATCC 23270 7136936 YP_002426985.1 CDS AFE_2605 NC_011761.1 2312853 2314289 D ABC transporter permease 2312853..2314289 Acidithiobacillus ferrooxidans ATCC 23270 7137230 YP_002426986.1 CDS AFE_2607 NC_011761.1 2315128 2315580 R identified by match to protein family HMM PF00376; MerR family transcriptional regulator complement(2315128..2315580) Acidithiobacillus ferrooxidans ATCC 23270 7135835 YP_002426987.1 CDS ihfA NC_011761.1 2315555 2315854 R identified by similarity to SP:P06984; match to protein family HMM PF00216; match to protein family HMM TIGR00987; integration host factor subunit alpha complement(2315555..2315854) Acidithiobacillus ferrooxidans ATCC 23270 7134078 YP_002426988.1 CDS pheT NC_011761.1 2315864 2318263 R identified by similarity to SP:P07395; match to protein family HMM PF01588; match to protein family HMM PF03147; match to protein family HMM PF03483; match to protein family HMM PF03484; match to protein family HMM TIGR00472; phenylalanyl-tRNA synthetase subunit beta complement(2315864..2318263) Acidithiobacillus ferrooxidans ATCC 23270 7136866 YP_002426989.1 CDS pheS NC_011761.1 2318273 2319295 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(2318273..2319295) Acidithiobacillus ferrooxidans ATCC 23270 7135612 YP_002426990.1 CDS rplT NC_011761.1 2319316 2319675 R binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 complement(2319316..2319675) Acidithiobacillus ferrooxidans ATCC 23270 7136269 YP_002426991.1 CDS rpmI NC_011761.1 2319694 2319891 R identified by similarity to SP:P07085; match to protein family HMM PF01632; match to protein family HMM TIGR00001; 50S ribosomal protein L35 complement(2319694..2319891) Acidithiobacillus ferrooxidans ATCC 23270 7136540 YP_002426992.1 CDS infC NC_011761.1 2319901 2320419 R identified by similarity to SP:P02999; match to protein family HMM PF00707; match to protein family HMM PF05198; match to protein family HMM TIGR00168; translation initiation factor IF-3 complement(2319901..2320419) Acidithiobacillus ferrooxidans ATCC 23270 7134693 YP_002426993.1 CDS thrS NC_011761.1 2320436 2322370 R catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase complement(2320436..2322370) Acidithiobacillus ferrooxidans ATCC 23270 7134934 YP_002426994.1 CDS AFE_2616 NC_011761.1 2322532 2322684 R identified by glimmer; putative; hypothetical protein complement(2322532..2322684) Acidithiobacillus ferrooxidans ATCC 23270 7135832 YP_002426995.1 CDS nuoN NC_011761.1 2322654 2324099 R identified by similarity to SP:P50973; match to protein family HMM PF00361; match to protein family HMM TIGR01770; NADH-quinone oxidoreductase subunit N complement(2322654..2324099) Acidithiobacillus ferrooxidans ATCC 23270 7137140 YP_002426996.1 CDS nuoM NC_011761.1 2324112 2325596 R identified by similarity to SP:P50974; match to protein family HMM PF00361; match to protein family HMM TIGR01972; NADH-quinone oxidoreductase subunit M complement(2324112..2325596) Acidithiobacillus ferrooxidans ATCC 23270 7135349 YP_002426997.1 CDS nuoL NC_011761.1 2325600 2327564 R identified by similarity to SP:P50939; match to protein family HMM PF00361; match to protein family HMM PF00662; match to protein family HMM TIGR01974; NADH-quinone oxidoreductase subunit L complement(2325600..2327564) Acidithiobacillus ferrooxidans ATCC 23270 7136647 YP_002426998.1 CDS nuoK NC_011761.1 2327584 2327901 R identified by similarity to SP:P50940; match to protein family HMM PF00420; NADH-quinone oxidoreductase subunit K complement(2327584..2327901) Acidithiobacillus ferrooxidans ATCC 23270 7135173 YP_002426999.1 CDS nuoJ NC_011761.1 2327901 2328497 R identified by similarity to SP:P50975; match to protein family HMM PF00499; NADH-quinone oxidoreductase subunit J complement(2327901..2328497) Acidithiobacillus ferrooxidans ATCC 23270 7137026 YP_002427000.1 CDS nuoI NC_011761.1 2328513 2329004 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I complement(2328513..2329004) Acidithiobacillus ferrooxidans ATCC 23270 7134530 YP_002427001.1 CDS nuoH NC_011761.1 2329015 2330040 R identified by match to protein family HMM PF00146; NADH-quinone oxidoreductase subunit H complement(2329015..2330040) Acidithiobacillus ferrooxidans ATCC 23270 7134775 YP_002427002.1 CDS nuoG NC_011761.1 2330052 2332400 R identified by match to protein family HMM PF00111; match to protein family HMM PF00384; match to protein family HMM PF04879; match to protein family HMM TIGR01973; NADH-quinone oxidoreductase subunit G complement(2330052..2332400) Acidithiobacillus ferrooxidans ATCC 23270 7136633 YP_002427003.1 CDS nuoF NC_011761.1 2332400 2333683 R identified by similarity to SP:O07948; match to protein family HMM PF01512; match to protein family HMM TIGR01959; NADH-quinone oxidoreductase subunit F complement(2332400..2333683) Acidithiobacillus ferrooxidans ATCC 23270 7137275 YP_002427004.1 CDS nuoE NC_011761.1 2333673 2334164 R identified by match to protein family HMM PF01257; match to protein family HMM TIGR01958; NADH-quinone oxidoreductase subunit E complement(2333673..2334164) Acidithiobacillus ferrooxidans ATCC 23270 7136415 YP_002427005.1 CDS nuoD NC_011761.1 2334168 2335421 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D complement(2334168..2335421) Acidithiobacillus ferrooxidans ATCC 23270 7134026 YP_002427006.1 CDS nuoC NC_011761.1 2335405 2336013 R identified by similarity to SP:O84971; match to protein family HMM PF00329; match to protein family HMM TIGR01961; NADH-quinone oxidoreductase subunit C complement(2335405..2336013) Acidithiobacillus ferrooxidans ATCC 23270 7135259 YP_002427007.1 CDS nuoB NC_011761.1 2336017 2336493 R The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B complement(2336017..2336493) Acidithiobacillus ferrooxidans ATCC 23270 7135300 YP_002427008.1 CDS nuoA NC_011761.1 2336484 2336840 R identified by similarity to SP:O84969; match to protein family HMM PF00507; NADH-quinone oxidoreductase subunit A complement(2336484..2336840) Acidithiobacillus ferrooxidans ATCC 23270 7134515 YP_002427009.1 CDS secG NC_011761.1 2337096 2337497 R identified by similarity to SP:P33582; match to protein family HMM PF03840; match to protein family HMM TIGR00810; preprotein translocase subunit SecG complement(2337096..2337497) Acidithiobacillus ferrooxidans ATCC 23270 7135844 YP_002427010.1 CDS tpiA NC_011761.1 2337502 2338275 R identified by match to protein family HMM PF00121; match to protein family HMM TIGR00419; triosephosphate isomerase complement(2337502..2338275) Acidithiobacillus ferrooxidans ATCC 23270 7136961 YP_002427011.1 CDS glmM NC_011761.1 2338382 2339746 R identified by similarity to SP:P31120; match to protein family HMM PF00408; match to protein family HMM PF02878; match to protein family HMM PF02879; match to protein family HMM PF02880; match to protein family HMM TIGR01455; phosphoglucosamine mutase complement(2338382..2339746) Acidithiobacillus ferrooxidans ATCC 23270 7136718 YP_002427012.1 CDS folP NC_011761.1 2339785 2340618 R identified by similarity to SP:P26282; match to protein family HMM PF00809; match to protein family HMM TIGR01496; dihydropteroate synthase complement(2339785..2340618) Acidithiobacillus ferrooxidans ATCC 23270 7137245 YP_002427013.1 CDS ftsH NC_011761.1 2340615 2342540 R identified by similarity to SP:P28691; match to protein family HMM PF00004; match to protein family HMM PF01434; match to protein family HMM PF06480; match to protein family HMM TIGR01241; cell division protein FtsH complement(2340615..2342540) Acidithiobacillus ferrooxidans ATCC 23270 7136912 YP_002427014.1 CDS tldD NC_011761.1 2342638 2344083 R identified by similarity to SP:P46473; match to protein family HMM PF01523; tldD protein complement(2342638..2344083) Acidithiobacillus ferrooxidans ATCC 23270 7134577 YP_002427015.1 CDS nrdA NC_011761.1 2344408 2347254 D identified by similarity to GB:CAB82485.1; match to protein family HMM PF00317; match to protein family HMM PF02867; match to protein family HMM PF03477; match to protein family HMM TIGR02506; ribonucleotide-diphosphate reductase subunit alpha 2344408..2347254 Acidithiobacillus ferrooxidans ATCC 23270 7136283 YP_002427016.1 CDS nrdB NC_011761.1 2347267 2348409 D Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit beta 2347267..2348409 Acidithiobacillus ferrooxidans ATCC 23270 7136097 YP_002427017.1 CDS AFE_2640 NC_011761.1 2348901 2349170 D identified by glimmer; putative; hypothetical protein 2348901..2349170 Acidithiobacillus ferrooxidans ATCC 23270 7136143 YP_002427018.1 CDS AFE_2641 NC_011761.1 2349182 2349523 D identified by match to protein family HMM PF01022; ArsR family transcriptional regulator 2349182..2349523 Acidithiobacillus ferrooxidans ATCC 23270 7134216 YP_002427019.1 CDS AFE_2642 NC_011761.1 2349520 2350797 D identified by match to protein family HMM PF07690; hypothetical protein 2349520..2350797 Acidithiobacillus ferrooxidans ATCC 23270 7136892 YP_002427020.1 CDS AFE_2643 NC_011761.1 2350794 2351135 D identified by similarity to GB:AAK02599.1; hypothetical protein 2350794..2351135 Acidithiobacillus ferrooxidans ATCC 23270 7136238 YP_002427021.1 CDS AFE_2644 NC_011761.1 2351189 2351941 D identified by match to protein family HMM PF00753; metallo-beta-lactamase family protein 2351189..2351941 Acidithiobacillus ferrooxidans ATCC 23270 7134858 YP_002427022.1 CDS AFE_2645 NC_011761.1 2352321 2352722 R identified by glimmer; putative; hypothetical protein complement(2352321..2352722) Acidithiobacillus ferrooxidans ATCC 23270 7136761 YP_002427023.1 CDS AFE_2646 NC_011761.1 2352957 2353202 R identified by glimmer; putative; hypothetical protein complement(2352957..2353202) Acidithiobacillus ferrooxidans ATCC 23270 7134020 YP_002427024.1 CDS AFE_2647 NC_011761.1 2353318 2353449 R identified by glimmer; putative; hypothetical protein complement(2353318..2353449) Acidithiobacillus ferrooxidans ATCC 23270 7136250 YP_002427025.1 CDS AFE_2648 NC_011761.1 2354638 2355072 D identified by glimmer; putative; hypothetical protein 2354638..2355072 Acidithiobacillus ferrooxidans ATCC 23270 7134896 YP_002427026.1 CDS AFE_2649 NC_011761.1 2355199 2355318 R identified by glimmer; putative; hypothetical protein complement(2355199..2355318) Acidithiobacillus ferrooxidans ATCC 23270 7135257 YP_002427027.1 CDS AFE_2650 NC_011761.1 2355693 2355857 R identified by glimmer; putative; hypothetical protein complement(2355693..2355857) Acidithiobacillus ferrooxidans ATCC 23270 7137150 YP_002427028.1 CDS AFE_2651 NC_011761.1 2355887 2356981 D identified by match to protein family HMM PF05425; copper resistance protein 2355887..2356981 Acidithiobacillus ferrooxidans ATCC 23270 7136329 YP_002427029.1 CDS AFE_2652 NC_011761.1 2357000 2357146 D identified by glimmer; putative; hypothetical protein 2357000..2357146 Acidithiobacillus ferrooxidans ATCC 23270 7136385 YP_002427030.1 CDS AFE_2653 NC_011761.1 2357600 2357887 R identified by glimmer; putative; hypothetical protein complement(2357600..2357887) Acidithiobacillus ferrooxidans ATCC 23270 7137138 YP_002427031.1 CDS dinB NC_011761.1 2358296 2359432 D identified by match to protein family HMM PF00817; DNA polymerase IV 2358296..2359432 Acidithiobacillus ferrooxidans ATCC 23270 7135423 YP_002427032.1 CDS AFE_2655 NC_011761.1 2359433 2359819 D identified by match to protein family HMM PF01850; PIN domain-containing protein 2359433..2359819 Acidithiobacillus ferrooxidans ATCC 23270 7134588 YP_002427033.1 CDS AFE_2656 NC_011761.1 2359889 2360626 R identified by similarity to GB:BAC74278.1; match to protein family HMM PF01904; hypothetical protein complement(2359889..2360626) Acidithiobacillus ferrooxidans ATCC 23270 7136497 YP_002427034.1 CDS AFE_2657 NC_011761.1 2360635 2360760 R identified by glimmer; putative; hypothetical protein complement(2360635..2360760) Acidithiobacillus ferrooxidans ATCC 23270 7135283 YP_002427035.1 CDS AFE_2658 NC_011761.1 2361174 2361476 D identified by similarity to GB:AAM81143.1; hypothetical protein 2361174..2361476 Acidithiobacillus ferrooxidans ATCC 23270 7135614 YP_002427036.1 CDS AFE_2659 NC_011761.1 2361538 2362944 D identified by match to protein family HMM PF00324; amino acid permease family protein 2361538..2362944 Acidithiobacillus ferrooxidans ATCC 23270 7137120 YP_002427037.1 CDS dcd NC_011761.1 2363056 2363622 R identified by similarity to SP:Q8XWV4; match to protein family HMM PF00692; match to protein family HMM TIGR02274; deoxycytidine triphosphate deaminase complement(2363056..2363622) Acidithiobacillus ferrooxidans ATCC 23270 7134128 YP_002427038.1 CDS mrp NC_011761.1 2363652 2364728 R identified by similarity to SP:P21590; Mrp protein complement(2363652..2364728) Acidithiobacillus ferrooxidans ATCC 23270 7134787 YP_002427039.1 CDS AFE_2662 NC_011761.1 2364743 2365057 R identified by match to protein family HMM PF03992; antibiotic biosynthesis monooxygenase family protein complement(2364743..2365057) Acidithiobacillus ferrooxidans ATCC 23270 7135096 YP_002427040.1 CDS dapB NC_011761.1 2365087 2365917 R identified by similarity to SP:P04036; match to protein family HMM PF01113; match to protein family HMM PF03447; match to protein family HMM PF05173; match to protein family HMM TIGR00036; dihydrodipicolinate reductase complement(2365087..2365917) Acidithiobacillus ferrooxidans ATCC 23270 7135806 YP_002427041.1 CDS dnaJ NC_011761.1 2365917 2367044 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(2365917..2367044) Acidithiobacillus ferrooxidans ATCC 23270 7135712 YP_002427042.1 CDS dnaK NC_011761.1 2367111 2369015 R identified by similarity to SP:P04475; match to protein family HMM PF00012; match to protein family HMM TIGR02350; chaperone protein Dnak complement(2367111..2369015) Acidithiobacillus ferrooxidans ATCC 23270 7134768 YP_002427043.1 CDS grpE NC_011761.1 2369061 2369576 R identified by similarity to SP:P09372; match to protein family HMM PF01025; co-chaperone GrpE complement(2369061..2369576) Acidithiobacillus ferrooxidans ATCC 23270 7135222 YP_002427044.1 CDS hrcA NC_011761.1 2369649 2370671 R identified by match to protein family HMM PF01628; match to protein family HMM TIGR00331; heat-inducible transcription repressor HrcA complement(2369649..2370671) Acidithiobacillus ferrooxidans ATCC 23270 7136764 YP_002427045.1 CDS AFE_2668 NC_011761.1 2370670 2370762 D identified by glimmer; putative; hypothetical protein 2370670..2370762 Acidithiobacillus ferrooxidans ATCC 23270 7135202 YP_002427046.1 CDS rpmG NC_011761.1 2370906 2371061 R in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 complement(2370906..2371061) Acidithiobacillus ferrooxidans ATCC 23270 7135100 YP_002427047.1 CDS rpmB NC_011761.1 2371072 2371308 R required for 70S ribosome assembly; 50S ribosomal protein L28 complement(2371072..2371308) Acidithiobacillus ferrooxidans ATCC 23270 7137040 YP_002427048.1 CDS metG NC_011761.1 2371419 2373455 D identified by similarity to SP:P00959; match to protein family HMM PF01588; match to protein family HMM PF09334; match to protein family HMM TIGR00398; match to protein family HMM TIGR00399; methionyl-tRNA synthetase 2371419..2373455 Acidithiobacillus ferrooxidans ATCC 23270 7136747 YP_002427049.1 CDS AFE_2671 NC_011761.1 2373448 2374566 R identified by similarity to SP:P39912; match to protein family HMM PF00793; phospho-2-dehydro-3-deoxyheptonate aldolase complement(2373448..2374566) Acidithiobacillus ferrooxidans ATCC 23270 7134033 YP_002427050.1 CDS fumC NC_011761.1 2374645 2376018 R identified by match to protein family HMM PF00206; match to protein family HMM TIGR00979; class II fumarate hydratase complement(2374645..2376018) Acidithiobacillus ferrooxidans ATCC 23270 7137072 YP_002427051.1 CDS AFE_2674 NC_011761.1 2376020 2377816 R identified by similarity to SP:P94876; match to protein family HMM PF01432; match to protein family HMM PF08439; oligoendopeptidase F complement(2376020..2377816) Acidithiobacillus ferrooxidans ATCC 23270 7135455 YP_002427052.1 CDS AFE_2675 NC_011761.1 2377860 2378348 R identified by similarity to GB:CAD84648.1; hypothetical protein complement(2377860..2378348) Acidithiobacillus ferrooxidans ATCC 23270 7136562 YP_002427053.1 CDS AFE_2676 NC_011761.1 2378470 2380173 D identified by glimmer; putative; hypothetical protein 2378470..2380173 Acidithiobacillus ferrooxidans ATCC 23270 7135726 YP_002427054.1 CDS AFE_2677 NC_011761.1 2380239 2380808 R identified by similarity to GB:AAO09303.1; 3-deoxy-D-manno-octulosonic-acid transferase complement(2380239..2380808) Acidithiobacillus ferrooxidans ATCC 23270 7134116 YP_002427055.1 CDS glgA NC_011761.1 2380966 2382435 D identified by similarity to SP:P08323; match to protein family HMM PF00534; match to protein family HMM PF08323; match to protein family HMM TIGR02095; glycogen synthase 2380966..2382435 Acidithiobacillus ferrooxidans ATCC 23270 7134050 YP_002427056.1 CDS AFE_2679 NC_011761.1 2382476 2383864 D identified by match to protein family HMM PF00753; match to protein family HMM PF07521; metallo-beta-lactamase family protein 2382476..2383864 Acidithiobacillus ferrooxidans ATCC 23270 7134528 YP_002427057.1 CDS AFE_2680 NC_011761.1 2383948 2384364 D identified by glimmer; putative; hypothetical protein 2383948..2384364 Acidithiobacillus ferrooxidans ATCC 23270 7134807 YP_002427058.1 CDS nth NC_011761.1 2384462 2385124 D identified by match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01083; endonuclease III 2384462..2385124 Acidithiobacillus ferrooxidans ATCC 23270 7135156 YP_002427059.1 CDS AFE_2681 NC_011761.1 2385104 2387065 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein complement(2385104..2387065) Acidithiobacillus ferrooxidans ATCC 23270 7136144 YP_002427060.1 CDS AFE_2683 NC_011761.1 2387448 2387639 R identified by glimmer; putative; hypothetical protein complement(2387448..2387639) Acidithiobacillus ferrooxidans ATCC 23270 7135511 YP_002427061.1 CDS AFE_2684 NC_011761.1 2387677 2389797 D identified by match to protein family HMM PF05658; match to protein family HMM PF05662; match to protein family HMM TIGR03304; hemagluttinin family protein 2387677..2389797 Acidithiobacillus ferrooxidans ATCC 23270 7134547 YP_002427062.1 CDS AFE_2685 NC_011761.1 2389908 2390459 D identified by match to protein family HMM PF00691; OmpA family protein 2389908..2390459 Acidithiobacillus ferrooxidans ATCC 23270 7134369 YP_002427063.1 CDS AFE_2686 NC_011761.1 2390524 2391621 R identified by match to protein family HMM PF08238; hypothetical protein complement(2390524..2391621) Acidithiobacillus ferrooxidans ATCC 23270 7134840 YP_002427064.1 CDS AFE_2687 NC_011761.1 2391839 2392426 D identified by glimmer; putative; hypothetical protein 2391839..2392426 Acidithiobacillus ferrooxidans ATCC 23270 7135206 YP_002427065.1 CDS AFE_2688 NC_011761.1 2392505 2392993 D identified by glimmer; putative; hypothetical protein 2392505..2392993 Acidithiobacillus ferrooxidans ATCC 23270 7136086 YP_002427066.1 CDS AFE_2689 NC_011761.1 2392997 2393791 R TonB family protein complement(2392997..2393791) Acidithiobacillus ferrooxidans ATCC 23270 7135717 YP_002427067.1 CDS AFE_2690 NC_011761.1 2393784 2395580 R identified by match to protein family HMM PF02321; type I secretion outer membrane protein complement(2393784..2395580) Acidithiobacillus ferrooxidans ATCC 23270 7134725 YP_002427068.1 CDS AFE_2691 NC_011761.1 2395612 2395758 R identified by glimmer; putative; hypothetical protein complement(2395612..2395758) Acidithiobacillus ferrooxidans ATCC 23270 7137166 YP_002427069.1 CDS AFE_2692 NC_011761.1 2395736 2397133 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01843; HlyD family type I secretion membrane fusion protein complement(2395736..2397133) Acidithiobacillus ferrooxidans ATCC 23270 7135936 YP_002427070.1 CDS AFE_2693 NC_011761.1 2397135 2399309 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; match to protein family HMM PF03412; match to protein family HMM TIGR01846; type I secretion system ATPase complement(2397135..2399309) Acidithiobacillus ferrooxidans ATCC 23270 7136628 YP_002427071.1 CDS AFE_2694 NC_011761.1 2399306 2399944 R identified by similarity to GB:CAE32332.1; hypothetical protein complement(2399306..2399944) Acidithiobacillus ferrooxidans ATCC 23270 7134986 YP_002427072.1 CDS AFE_2695 NC_011761.1 2399916 2400143 D identified by glimmer; putative; hypothetical protein 2399916..2400143 Acidithiobacillus ferrooxidans ATCC 23270 7134031 YP_002427073.1 CDS AFE_2696 NC_011761.1 2400189 2401577 R identified by match to protein family HMM PF00158; match to protein family HMM PF02954; sigma-54 dependent transcriptional regulator complement(2400189..2401577) Acidithiobacillus ferrooxidans ATCC 23270 7137280 YP_002427074.1 CDS AFE_2697 NC_011761.1 2401577 2403349 R identified by similarity to PIR:H83107; hypothetical protein complement(2401577..2403349) Acidithiobacillus ferrooxidans ATCC 23270 7135578 YP_002427075.1 CDS AFE_2698 NC_011761.1 2403333 2403944 R identified by glimmer; putative; hypothetical protein complement(2403333..2403944) Acidithiobacillus ferrooxidans ATCC 23270 7136327 YP_002427076.1 CDS AFE_2699 NC_011761.1 2403941 2404780 R identified by match to protein family HMM PF00515; match to protein family HMM PF07719; lipoprotein complement(2403941..2404780) Acidithiobacillus ferrooxidans ATCC 23270 7134652 YP_002427077.1 CDS tadC NC_011761.1 2404783 2405721 R identified by similarity to GB:AAL92472.1; match to protein family HMM PF00482; tight adherence protein TadC complement(2404783..2405721) Acidithiobacillus ferrooxidans ATCC 23270 7135164 YP_002427078.1 CDS tadB NC_011761.1 2405729 2406670 R identified by similarity to GB:AAO10168.1; match to protein family HMM PF00482; tight adherence protein TadB complement(2405729..2406670) Acidithiobacillus ferrooxidans ATCC 23270 7134976 YP_002427079.1 CDS tadA NC_011761.1 2406667 2408001 R identified by similarity to GB:AAN75211.1; match to protein family HMM PF00437; tight adherence protein TadA complement(2406667..2408001) Acidithiobacillus ferrooxidans ATCC 23270 7137006 YP_002427080.1 CDS AFE_2703 NC_011761.1 2407998 2409227 R identified by similarity to GB:AAF40194.1; pilus assembly protein CpaE complement(2407998..2409227) Acidithiobacillus ferrooxidans ATCC 23270 7136062 YP_002427081.1 CDS AFE_2704 NC_011761.1 2409224 2410660 R identified by match to protein family HMM PF00263; type II/III secretion system protein complement(2409224..2410660) Acidithiobacillus ferrooxidans ATCC 23270 7134499 YP_002427082.1 CDS AFE_2705 NC_011761.1 2410674 2411645 R identified by similarity to GB:CAE32322.1; match to protein family HMM PF08666; match to protein family HMM TIGR03177; hypothetical protein complement(2410674..2411645) Acidithiobacillus ferrooxidans ATCC 23270 7134365 YP_002427083.1 CDS AFE_2706 NC_011761.1 2411644 2411748 D identified by glimmer; putative; hypothetical protein 2411644..2411748 Acidithiobacillus ferrooxidans ATCC 23270 7136545 YP_002427084.1 CDS AFE_2707 NC_011761.1 2411754 2412239 R identified by similarity to GB:CAE42273.1; match to protein family HMM PF07811; hypothetical protein complement(2411754..2412239) Acidithiobacillus ferrooxidans ATCC 23270 7137219 YP_002427085.1 CDS AFE_2708 NC_011761.1 2412248 2412691 R identified by match to protein family HMM PF01478; hypothetical protein complement(2412248..2412691) Acidithiobacillus ferrooxidans ATCC 23270 7136960 YP_002427086.1 CDS AFE_2709 NC_011761.1 2413117 2414343 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISAfe3, transposase 2413117..2414343 Acidithiobacillus ferrooxidans ATCC 23270 7134281 YP_002427087.1 CDS AFE_2710 NC_011761.1 2414427 2414666 R identified by match to protein family HMM PF04964; pilin complement(2414427..2414666) Acidithiobacillus ferrooxidans ATCC 23270 7136717 YP_002427088.1 CDS AFE_2711 NC_011761.1 2414893 2416050 R identified by glimmer; putative; hypothetical protein complement(2414893..2416050) Acidithiobacillus ferrooxidans ATCC 23270 7136050 YP_002427089.1 CDS AFE_2712 NC_011761.1 2416116 2416568 D identified by glimmer; putative; hypothetical protein 2416116..2416568 Acidithiobacillus ferrooxidans ATCC 23270 7137153 YP_002427090.1 CDS AFE_2713 NC_011761.1 2416675 2417049 R identified by glimmer; putative; hypothetical protein complement(2416675..2417049) Acidithiobacillus ferrooxidans ATCC 23270 7136920 YP_002427091.1 CDS AFE_2714 NC_011761.1 2417016 2417330 R identified by glimmer; putative; hypothetical protein complement(2417016..2417330) Acidithiobacillus ferrooxidans ATCC 23270 7137105 YP_002427092.1 CDS AFE_2715 NC_011761.1 2417685 2418122 D identified by match to protein family HMM PF00583; GNAT family acetyltransferase 2417685..2418122 Acidithiobacillus ferrooxidans ATCC 23270 7136251 YP_002427093.1 CDS AFE_2716 NC_011761.1 2418150 2420438 R identified by match to protein family HMM PF00515; match to protein family HMM PF00685; match to protein family HMM PF07719; match to protein family HMM PF07720; match to protein family HMM PF07721; TPR domain/sulfotransferase domain-containing protein complement(2418150..2420438) Acidithiobacillus ferrooxidans ATCC 23270 7136823 YP_002427094.1 CDS AFE_2717 NC_011761.1 2420539 2420940 R hypothetical protein complement(2420539..2420940) Acidithiobacillus ferrooxidans ATCC 23270 7136561 YP_002427095.1 CDS nrdD NC_011761.1 2421121 2422896 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 2421121..2422896 Acidithiobacillus ferrooxidans ATCC 23270 7136323 YP_002427096.1 CDS AFE_2719 NC_011761.1 2422916 2423122 D identified by similarity to GB:AAP85991.1; hypothetical protein 2422916..2423122 Acidithiobacillus ferrooxidans ATCC 23270 7136904 YP_002427097.1 CDS nrdG NC_011761.1 2423151 2423852 D identified by similarity to GB:CAA10042.1; match to protein family HMM PF04055; match to protein family HMM TIGR02495; anaerobic ribonucleoside-triphosphate reductase subunit beta 2423151..2423852 Acidithiobacillus ferrooxidans ATCC 23270 7136809 YP_002427098.1 CDS AFE_2721 NC_011761.1 2423861 2425393 R identified by similarity to PIR:C70441; match to protein family HMM PF03099; lipoate-protein ligase A complement(2423861..2425393) Acidithiobacillus ferrooxidans ATCC 23270 7134847 YP_002427099.1 CDS yhbV NC_011761.1 2425407 2426285 R identified by match to protein family HMM PF01136; U32 family peptidase complement(2425407..2426285) Acidithiobacillus ferrooxidans ATCC 23270 7136995 YP_002427100.1 CDS AFE_2723 NC_011761.1 2426363 2427373 R identified by similarity to GB:AAQ61744.1; match to protein family HMM PF01136; U32 family peptidase complement(2426363..2427373) Acidithiobacillus ferrooxidans ATCC 23270 7135354 YP_002427101.1 CDS AFE_2724 NC_011761.1 2427404 2428018 R identified by similarity to PIR:G83157; hypothetical protein complement(2427404..2428018) Acidithiobacillus ferrooxidans ATCC 23270 7134015 YP_002427102.1 CDS AFE_2726 NC_011761.1 2429353 2429700 D identified by glimmer; putative; hypothetical protein 2429353..2429700 Acidithiobacillus ferrooxidans ATCC 23270 7136738 YP_002427103.1 CDS cycA-2 NC_011761.1 2429913 2430566 D identified by match to protein family HMM PF00034; cytochrome c4 2429913..2430566 Acidithiobacillus ferrooxidans ATCC 23270 7134782 YP_002427104.1 CDS sdr_2 NC_011761.1 2430572 2431381 D identified by match to protein family HMM PF00106; short-chain dehydrogenase 2430572..2431381 Acidithiobacillus ferrooxidans ATCC 23270 7135568 YP_002427105.1 CDS petA-2 NC_011761.1 2431412 2432032 D identified by match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416; ubiquinol--cytochrome c reductase, iron-sulfur subunit 2431412..2432032 Acidithiobacillus ferrooxidans ATCC 23270 7136942 YP_002427106.1 CDS petB-2 NC_011761.1 2432060 2433274 D identified by similarity to SP:P23134; match to protein family HMM PF00032; match to protein family HMM PF00033; ubiquinol--cytochrome c reductase, cytochrome b subunit 2432060..2433274 Acidithiobacillus ferrooxidans ATCC 23270 7134881 YP_002427107.1 CDS petC-2 NC_011761.1 2433297 2433998 D identified by match to protein family HMM PF02167; ubiquinol--cytochrome c reductase, cytochrome c1 subunit 2433297..2433998 Acidithiobacillus ferrooxidans ATCC 23270 7136112 YP_002427108.1 CDS iro NC_011761.1 2434085 2434405 D identified by similarity to SP:P50500; match to protein family HMM TIGR01409; iron oxidase 2434085..2434405 Acidithiobacillus ferrooxidans ATCC 23270 7135586 YP_002427109.1 CDS AFE_2733 NC_011761.1 2434579 2435031 D identified by glimmer; putative; hypothetical protein 2434579..2435031 Acidithiobacillus ferrooxidans ATCC 23270 7136299 YP_002427110.1 CDS AFE_2734 NC_011761.1 2435132 2435740 D identified by glimmer; putative; hypothetical protein 2435132..2435740 Acidithiobacillus ferrooxidans ATCC 23270 7136940 YP_002427111.1 CDS rrmJ NC_011761.1 2435895 2436554 R identified by similarity to SP:P28692; match to protein family HMM PF01728; ribosomal RNA large subunit methyltransferase J complement(2435895..2436554) Acidithiobacillus ferrooxidans ATCC 23270 7135997 YP_002427112.1 CDS AFE_2737 NC_011761.1 2436644 2436928 D identified by similarity to SP:P71376; match to protein family HMM PF01985; hypothetical protein 2436644..2436928 Acidithiobacillus ferrooxidans ATCC 23270 7136179 YP_002427113.1 CDS AFE_2738 NC_011761.1 2437018 2437401 D identified by match to protein family HMM PF04379; apaG protein 2437018..2437401 Acidithiobacillus ferrooxidans ATCC 23270 7134552 YP_002427114.1 CDS AFE_2739 NC_011761.1 2437398 2438003 D identified by similarity to SP:Q05197; match to protein family HMM PF08241; match to protein family HMM PF08242; phosphatidylethanolamine N-methyltransferase 2437398..2438003 Acidithiobacillus ferrooxidans ATCC 23270 7134242 YP_002427115.1 CDS typA NC_011761.1 2438071 2439888 R identified by match to protein family HMM PF00009; match to protein family HMM PF00679; match to protein family HMM PF03144; match to protein family HMM TIGR00231; match to protein family HMM TIGR01394; GTP-binding protein TypA complement(2438071..2439888) Acidithiobacillus ferrooxidans ATCC 23270 7135154 YP_002427116.1 CDS omp40 NC_011761.1 2440045 2441259 R identified by similarity to GB:CAA10107.1; match to protein family HMM PF07396; major outer membrane protein 40 complement(2440045..2441259) Acidithiobacillus ferrooxidans ATCC 23270 7134114 YP_002427117.1 CDS dapF NC_011761.1 2441606 2442472 D identified by similarity to SP:P08885; match to protein family HMM PF01678; match to protein family HMM TIGR00652; diaminopimelate epimerase 2441606..2442472 Acidithiobacillus ferrooxidans ATCC 23270 7136031 YP_002427118.1 CDS AFE_2744 NC_011761.1 2442456 2442650 D identified by glimmer; putative; hypothetical protein 2442456..2442650 Acidithiobacillus ferrooxidans ATCC 23270 7136617 YP_002427119.1 CDS AFE_2745 NC_011761.1 2442651 2443334 D identified by similarity to PIR:S61401; hypothetical protein 2442651..2443334 Acidithiobacillus ferrooxidans ATCC 23270 7134400 YP_002427120.1 CDS xerC NC_011761.1 2443328 2444272 D identified by similarity to SP:P22885; match to protein family HMM PF00589; match to protein family HMM PF02899; tyrosine recombinase XerC 2443328..2444272 Acidithiobacillus ferrooxidans ATCC 23270 7135595 YP_002427121.1 CDS hslV NC_011761.1 2444287 2444808 D heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit 2444287..2444808 Acidithiobacillus ferrooxidans ATCC 23270 7135130 YP_002427122.1 CDS hslU NC_011761.1 2444811 2446133 D identified by similarity to SP:P32168; match to protein family HMM PF07724; match to protein family HMM TIGR00390; heat shock protein HslVU, ATPase subunit HslU 2444811..2446133 Acidithiobacillus ferrooxidans ATCC 23270 7135825 YP_002427123.1 CDS AFE_2749 NC_011761.1 2446156 2446488 R identified by similarity to PIR:D75566; match to protein family HMM PF08754; hypothetical protein complement(2446156..2446488) Acidithiobacillus ferrooxidans ATCC 23270 7136576 YP_002427124.1 CDS rpoH NC_011761.1 2446485 2447345 R identified by similarity to SP:P00580; match to protein family HMM PF04542; match to protein family HMM PF04545; match to protein family HMM TIGR02392; match to protein family HMM TIGR02937; RNA polymerase sigma-32 factor complement(2446485..2447345) Acidithiobacillus ferrooxidans ATCC 23270 7134828 YP_002427125.1 CDS AFE_2751 NC_011761.1 2447489 2448394 R identified by similarity to GB:AAK20882.1; match to protein family HMM PF02687; cell division protein FtsX complement(2447489..2448394) Acidithiobacillus ferrooxidans ATCC 23270 7135826 YP_002427126.1 CDS ftsE NC_011761.1 2448391 2449062 R identified by similarity to GB:AAK20881.1; match to protein family HMM PF00005; match to protein family HMM TIGR02673; cell division ATP-binding protein FtsE complement(2448391..2449062) Acidithiobacillus ferrooxidans ATCC 23270 7134324 YP_002427127.1 CDS ftsY NC_011761.1 2449059 2450009 R identified by similarity to SP:P10121; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM TIGR00064; signal recognition particle-docking protein FtsY complement(2449059..2450009) Acidithiobacillus ferrooxidans ATCC 23270 7136214 YP_002427128.1 CDS AFE_2754 NC_011761.1 2450213 2450782 D identified by match to protein family HMM PF03602; match to protein family HMM TIGR00095; methyltransferase 2450213..2450782 Acidithiobacillus ferrooxidans ATCC 23270 7134384 YP_002427129.1 CDS coaD NC_011761.1 2450775 2451299 D identified by similarity to SP:P23875; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510; pantetheine-phosphate adenylyltransferase 2450775..2451299 Acidithiobacillus ferrooxidans ATCC 23270 7135765 YP_002427130.1 CDS AFE_2757 NC_011761.1 2451328 2451579 D identified by match to protein family HMM PF00037; iron-sulfur cluster-binding protein 2451328..2451579 Acidithiobacillus ferrooxidans ATCC 23270 7134923 YP_002427131.1 CDS AFE_2756 NC_011761.1 2451563 2453542 R identified by similarity to PIR:F83597; hypothetical protein complement(2451563..2453542) Acidithiobacillus ferrooxidans ATCC 23270 7135179 YP_002427132.1 CDS mutM NC_011761.1 2453559 2454371 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(2453559..2454371) Acidithiobacillus ferrooxidans ATCC 23270 7134798 YP_002427133.1 CDS AFE_2759 NC_011761.1 2454374 2455240 R identified by match to protein family HMM PF05175; match to protein family HMM TIGR00536; match to protein family HMM TIGR03387; HemK family modification methylase complement(2454374..2455240) Acidithiobacillus ferrooxidans ATCC 23270 7135697 YP_002427134.1 CDS prfA NC_011761.1 2455230 2456327 R identified by similarity to SP:P07011; match to protein family HMM PF00472; match to protein family HMM PF03462; match to protein family HMM TIGR00019; peptide chain release factor 1 complement(2455230..2456327) Acidithiobacillus ferrooxidans ATCC 23270 7135374 YP_002427135.1 CDS hemA NC_011761.1 2456324 2457655 R identified by similarity to SP:P13580; match to protein family HMM PF00745; match to protein family HMM PF01488; match to protein family HMM PF05201; match to protein family HMM TIGR01035; glutamyl-tRNA reductase complement(2456324..2457655) Acidithiobacillus ferrooxidans ATCC 23270 7135065 YP_002427136.1 CDS AFE_2762 NC_011761.1 2457560 2459371 D identified by match to protein family HMM PF00515; match to protein family HMM PF07719; match to protein family HMM PF07721; hypothetical protein 2457560..2459371 Acidithiobacillus ferrooxidans ATCC 23270 7134237 YP_002427137.1 CDS AFE_2763 NC_011761.1 2459368 2460024 D identified by match to protein family HMM PF03550; match to protein family HMM TIGR00548; outer membrane lipoprotein LolB 2459368..2460024 Acidithiobacillus ferrooxidans ATCC 23270 7134329 YP_002427138.1 CDS ispE NC_011761.1 2460021 2460866 D identified by similarity to SP:P24209; match to protein family HMM PF00288; match to protein family HMM TIGR00154; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2460021..2460866 Acidithiobacillus ferrooxidans ATCC 23270 7137179 YP_002427139.1 CDS prsA NC_011761.1 2460994 2461941 D identified by similarity to SP:P08330; match to protein family HMM PF00156; match to protein family HMM TIGR01251; ribose-phosphate pyrophosphokinase 2460994..2461941 Acidithiobacillus ferrooxidans ATCC 23270 7135837 YP_002427140.1 CDS AFE_2768 NC_011761.1 2462294 2462674 R transposase, degenerate complement(2462294..2462674) Acidithiobacillus ferrooxidans ATCC 23270 7136028 YP_002427141.1 CDS AFE_2769 NC_011761.1 2462775 2464097 R identified by match to protein family HMM PF01396; match to protein family HMM PF04471; restriction endonuclease complement(2462775..2464097) Acidithiobacillus ferrooxidans ATCC 23270 7135544 YP_002427142.1 CDS AFE_2771 NC_011761.1 2464656 2464895 R SpoVT/AbrB like domain-containing protein complement(2464656..2464895) Acidithiobacillus ferrooxidans ATCC 23270 7136136 YP_002427143.1 CDS AFE_2772 NC_011761.1 2465025 2465279 D identified by glimmer; putative; hypothetical protein 2465025..2465279 Acidithiobacillus ferrooxidans ATCC 23270 7136148 YP_002427144.1 CDS yghU NC_011761.1 2465564 2466445 R identified by similarity to SP:Q46845; match to protein family HMM PF00043; match to protein family HMM PF02798; glutathione S-transferase complement(2465564..2466445) Acidithiobacillus ferrooxidans ATCC 23270 7134246 YP_002427145.1 CDS AFE_2774 NC_011761.1 2466545 2466787 R transposase, degenerate complement(2466545..2466787) Acidithiobacillus ferrooxidans ATCC 23270 7136530 YP_002427146.1 CDS AFE_2775 NC_011761.1 2467094 2467879 R identified by match to protein family HMM PF01925; membrane protein complement(2467094..2467879) Acidithiobacillus ferrooxidans ATCC 23270 7137232 YP_002427147.1 CDS AFE_2776 NC_011761.1 2467945 2469552 R identified by similarity to SP:P20906; match to protein family HMM PF00205; match to protein family HMM PF02775; match to protein family HMM PF02776; benzoylformate decarboxylase complement(2467945..2469552) Acidithiobacillus ferrooxidans ATCC 23270 7134781 YP_002427148.1 CDS AFE_2777 NC_011761.1 2469780 2470400 R identified by similarity to GB:CAB62690.1; hypothetical protein complement(2469780..2470400) Acidithiobacillus ferrooxidans ATCC 23270 7136459 YP_002427149.1 CDS AFE_2778 NC_011761.1 2470432 2470734 R identified by glimmer; putative; hypothetical protein complement(2470432..2470734) Acidithiobacillus ferrooxidans ATCC 23270 7134506 YP_002427150.1 CDS AFE_2779 NC_011761.1 2470925 2472949 R identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525; copper-translocating P-type ATPase complement(2470925..2472949) Acidithiobacillus ferrooxidans ATCC 23270 7136837 YP_002427151.1 CDS AFE_2780 NC_011761.1 2473228 2473620 D identified by glimmer; putative; hypothetical protein 2473228..2473620 Acidithiobacillus ferrooxidans ATCC 23270 7134551 YP_002427152.1 CDS AFE_2782 NC_011761.1 2474158 2474520 D identified by similarity to SP:P77214; cation efflux system protein 2474158..2474520 Acidithiobacillus ferrooxidans ATCC 23270 7136783 YP_002427153.1 CDS AFE_2783 NC_011761.1 2474645 2474953 D identified by glimmer; putative; hypothetical protein 2474645..2474953 Acidithiobacillus ferrooxidans ATCC 23270 7135084 YP_002427154.1 CDS AFE_2784 NC_011761.1 2475367 2476227 D identified by glimmer; putative; hypothetical protein 2475367..2476227 Acidithiobacillus ferrooxidans ATCC 23270 7136665 YP_002427155.1 CDS AFE_2785 NC_011761.1 2476508 2477662 R identified by glimmer; putative; hypothetical protein complement(2476508..2477662) Acidithiobacillus ferrooxidans ATCC 23270 7136267 YP_002427156.1 CDS AFE_2787 NC_011761.1 2477769 2477861 D identified by glimmer; putative; hypothetical protein 2477769..2477861 Acidithiobacillus ferrooxidans ATCC 23270 7137204 YP_002427157.1 CDS AFE_2786 NC_011761.1 2477856 2478149 R transposase, degenerate complement(2477856..2478149) Acidithiobacillus ferrooxidans ATCC 23270 7136917 YP_002427158.1 CDS AFE_2788 NC_011761.1 2478570 2478923 D identified by match to protein family HMM PF01906; hypothetical protein 2478570..2478923 Acidithiobacillus ferrooxidans ATCC 23270 7136119 YP_002427159.1 CDS AFE_2789 NC_011761.1 2479043 2479825 R identified by glimmer; putative; hypothetical protein complement(2479043..2479825) Acidithiobacillus ferrooxidans ATCC 23270 7134899 YP_002427160.1 CDS AFE_2790 NC_011761.1 2480037 2483105 R identified by match to protein family HMM PF04313; match to protein family HMM PF04851; match to protein family HMM TIGR00348; type I restriction-modification enzyme, R subunit complement(2480037..2483105) Acidithiobacillus ferrooxidans ATCC 23270 7134994 YP_002427161.1 CDS AFE_2791 NC_011761.1 2483875 2485131 R identified by match to protein family HMM PF01420; type I restriction-modification system subunit S complement(2483875..2485131) Acidithiobacillus ferrooxidans ATCC 23270 7134192 YP_002427162.1 CDS AFE_2792 NC_011761.1 2485271 2485492 R identified by similarity to PIR:A87339; hypothetical protein complement(2485271..2485492) Acidithiobacillus ferrooxidans ATCC 23270 7135461 YP_002427163.1 CDS AFE_2793 NC_011761.1 2485818 2487395 R identified by match to protein family HMM PF02384; type I restriction-modification system, M subunit complement(2485818..2487395) Acidithiobacillus ferrooxidans ATCC 23270 7135120 YP_002427164.1 CDS AFE_2794 NC_011761.1 2487482 2487904 D identified by glimmer; putative; hypothetical protein 2487482..2487904 Acidithiobacillus ferrooxidans ATCC 23270 7135788 YP_002427165.1 CDS AFE_2795 NC_011761.1 2488255 2488359 D identified by glimmer; putative; hypothetical protein 2488255..2488359 Acidithiobacillus ferrooxidans ATCC 23270 7136359 YP_002427166.1 CDS AFE_2796 NC_011761.1 2488606 2489286 R ArsR family transcriptional regulator complement(2488606..2489286) Acidithiobacillus ferrooxidans ATCC 23270 7134312 YP_002427167.1 CDS AFE_2797 NC_011761.1 2489396 2489806 D identified by glimmer; putative; hypothetical protein 2489396..2489806 Acidithiobacillus ferrooxidans ATCC 23270 7134637 YP_002427168.1 CDS ogt-1 NC_011761.1 2489916 2490440 D identified by similarity to SP:P09168; match to protein family HMM PF01035; match to protein family HMM TIGR00589; methylated-DNA--protein-cysteine methyltransferase 2489916..2490440 Acidithiobacillus ferrooxidans ATCC 23270 7134742 YP_002427169.1 CDS AFE_2799 NC_011761.1 2490478 2491968 R identified by similarity to SP:P04395; match to protein family HMM PF00165; match to protein family HMM PF00730; match to protein family HMM PF02805; match to protein family HMM PF06029; Ada family transcriptional regulator/DNA-3-methyladenine glycosylase II complement(2490478..2491968) Acidithiobacillus ferrooxidans ATCC 23270 7134894 YP_002427170.1 CDS AFE_2800 NC_011761.1 2492200 2492598 D identified by match to protein family HMM PF00903; glyoxalase family protein 2492200..2492598 Acidithiobacillus ferrooxidans ATCC 23270 7137163 YP_002427171.1 CDS AFE_2801 NC_011761.1 2492595 2493338 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; match to protein family HMM PF08659; short-chain dehydrogenase 2492595..2493338 Acidithiobacillus ferrooxidans ATCC 23270 7134690 YP_002427172.1 CDS AFE_2802 NC_011761.1 2493412 2493741 D identified by match to protein family HMM PF00893; SMR family multidrug resistance protein 2493412..2493741 Acidithiobacillus ferrooxidans ATCC 23270 7136288 YP_002427173.1 CDS AFE_2803 NC_011761.1 2493794 2494336 D identified by match to protein family HMM PF03358; FMN reductase, NADPH-dependent 2493794..2494336 Acidithiobacillus ferrooxidans ATCC 23270 7136535 YP_002427174.1 CDS AFE_2804 NC_011761.1 2494340 2494819 D identified by similarity to GB:AAQ59281.1; hypothetical protein 2494340..2494819 Acidithiobacillus ferrooxidans ATCC 23270 7136716 YP_002427175.1 CDS AFE_2805 NC_011761.1 2494821 2495306 D identified by similarity to GB:CAD16379.1; match to protein family HMM PF07883; hypothetical protein 2494821..2495306 Acidithiobacillus ferrooxidans ATCC 23270 7134486 YP_002427176.1 CDS AFE_2806 NC_011761.1 2495317 2495964 D identified by similarity to PIR:B83761; hypothetical protein 2495317..2495964 Acidithiobacillus ferrooxidans ATCC 23270 7134194 YP_002427177.1 CDS AFE_2807 NC_011761.1 2495978 2496634 D identified by match to protein family HMM PF04299; transcriptional regulator 2495978..2496634 Acidithiobacillus ferrooxidans ATCC 23270 7134335 YP_002427178.1 CDS AFE_2808 NC_011761.1 2496676 2496870 R identified by glimmer; putative; hypothetical protein complement(2496676..2496870) Acidithiobacillus ferrooxidans ATCC 23270 7135719 YP_002427179.1 CDS AFE_2809 NC_011761.1 2496917 2497018 R identified by glimmer; putative; hypothetical protein complement(2496917..2497018) Acidithiobacillus ferrooxidans ATCC 23270 7135438 YP_002427180.1 CDS AFE_2810 NC_011761.1 2497006 2497188 R identified by glimmer; putative; hypothetical protein complement(2497006..2497188) Acidithiobacillus ferrooxidans ATCC 23270 7135140 YP_002427181.1 CDS AFE_2811 NC_011761.1 2497202 2497507 R lipoprotein complement(2497202..2497507) Acidithiobacillus ferrooxidans ATCC 23270 7134815 YP_002427182.1 CDS AFE_2812 NC_011761.1 2497661 2497762 R identified by glimmer; putative; hypothetical protein complement(2497661..2497762) Acidithiobacillus ferrooxidans ATCC 23270 7135522 YP_002427183.1 CDS AFE_2813 NC_011761.1 2497764 2497862 R identified by glimmer; putative; hypothetical protein complement(2497764..2497862) Acidithiobacillus ferrooxidans ATCC 23270 7136621 YP_002427184.1 CDS AFE_2814 NC_011761.1 2497935 2498489 D identified by glimmer; putative; hypothetical protein 2497935..2498489 Acidithiobacillus ferrooxidans ATCC 23270 7135388 YP_002427185.1 CDS pepP NC_011761.1 2498521 2499861 R identified by similarity to SP:P15034; match to protein family HMM PF00557; match to protein family HMM PF05195; Xaa-Pro aminopeptidase complement(2498521..2499861) Acidithiobacillus ferrooxidans ATCC 23270 7134619 YP_002427186.1 CDS AFE_2816 NC_011761.1 2499984 2500424 R identified by glimmer; putative; hypothetical protein complement(2499984..2500424) Acidithiobacillus ferrooxidans ATCC 23270 7136544 YP_002427187.1 CDS radA NC_011761.1 2500594 2501952 R Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA complement(2500594..2501952) Acidithiobacillus ferrooxidans ATCC 23270 7136160 YP_002427188.1 CDS alr NC_011761.1 2501949 2503043 R identified by similarity to SP:P29743; match to protein family HMM PF00842; match to protein family HMM PF01168; match to protein family HMM TIGR00492; alanine racemase complement(2501949..2503043) Acidithiobacillus ferrooxidans ATCC 23270 7135303 YP_002427189.1 CDS dnaB NC_011761.1 2503130 2504503 R identified by match to protein family HMM PF00772; match to protein family HMM PF03796; match to protein family HMM TIGR00665; replicative DNA helicase complement(2503130..2504503) Acidithiobacillus ferrooxidans ATCC 23270 7137229 YP_002427190.1 CDS rplI NC_011761.1 2504518 2504964 R in Escherichia coli this protein is wrapped around the base of the L1 stalk; 50S ribosomal protein L9 complement(2504518..2504964) Acidithiobacillus ferrooxidans ATCC 23270 7136171 YP_002427191.1 CDS AFE_2821 NC_011761.1 2505002 2505583 R identified by glimmer; putative; hypothetical protein complement(2505002..2505583) Acidithiobacillus ferrooxidans ATCC 23270 7136970 YP_002427192.1 CDS AFE_2822 NC_011761.1 2505559 2505915 R identified by glimmer; putative; hypothetical protein complement(2505559..2505915) Acidithiobacillus ferrooxidans ATCC 23270 7134631 YP_002427193.1 CDS rpS18 NC_011761.1 2505931 2506209 R identified by similarity to SP:P02374; match to protein family HMM PF01084; match to protein family HMM TIGR00165; 30S ribosomal protein S18 complement(2505931..2506209) Acidithiobacillus ferrooxidans ATCC 23270 7135367 YP_002427194.1 CDS rpsF NC_011761.1 2506226 2506630 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(2506226..2506630) Acidithiobacillus ferrooxidans ATCC 23270 7134505 YP_002427195.1 CDS nagZ NC_011761.1 2506755 2507819 R identified by similarity to SP:P75949; match to protein family HMM PF00933; beta-hexosaminidase complement(2506755..2507819) Acidithiobacillus ferrooxidans ATCC 23270 7134019 YP_002427196.1 CDS AFE_2826 NC_011761.1 2507803 2509944 R hypothetical protein complement(2507803..2509944) Acidithiobacillus ferrooxidans ATCC 23270 7136224 YP_002427197.1 CDS AFE_2827 NC_011761.1 2509945 2510499 R identified by match to protein family HMM PF03734; ErfK/YbiS/YcfS/YnhG family protein complement(2509945..2510499) Acidithiobacillus ferrooxidans ATCC 23270 7136310 YP_002427198.1 CDS rumA NC_011761.1 2510468 2511790 R identified by similarity to SP:P55135; match to protein family HMM PF01938; match to protein family HMM PF05958; match to protein family HMM TIGR00479; 23S rRNA (uracil-5-)-methyltransferase complement(2510468..2511790) Acidithiobacillus ferrooxidans ATCC 23270 7134555 YP_002427199.1 CDS AFE_2829 NC_011761.1 2511765 2512574 R identified by similarity to PIR:H81856; hypothetical protein complement(2511765..2512574) Acidithiobacillus ferrooxidans ATCC 23270 7135661 YP_002427200.1 CDS AFE_2830 NC_011761.1 2512583 2513011 R identified by similarity to GB:CAD85351.1; hypothetical protein complement(2512583..2513011) Acidithiobacillus ferrooxidans ATCC 23270 7134845 YP_002427201.1 CDS AFE_2831 NC_011761.1 2513281 2515320 R identified by glimmer; putative; hypothetical protein complement(2513281..2515320) Acidithiobacillus ferrooxidans ATCC 23270 7136060 YP_002427202.1 CDS cysM NC_011761.1 2515346 2516230 R identified by similarity to SP:P16703; match to protein family HMM PF00291; match to protein family HMM TIGR01136; match to protein family HMM TIGR01138; cysteine synthase B complement(2515346..2516230) Acidithiobacillus ferrooxidans ATCC 23270 7135333 YP_002427203.1 CDS pgl NC_011761.1 2516336 2517046 D identified by match to protein family HMM TIGR01198; 6-phosphogluconolactonase 2516336..2517046 Acidithiobacillus ferrooxidans ATCC 23270 7135813 YP_002427204.1 CDS AFE_2834 NC_011761.1 2517120 2518058 R identified by match to protein family HMM PF01145; hypothetical protein complement(2517120..2518058) Acidithiobacillus ferrooxidans ATCC 23270 7136958 YP_002427205.1 CDS AFE_2835 NC_011761.1 2518034 2518495 R identified by match to protein family HMM PF01957; hypothetical protein complement(2518034..2518495) Acidithiobacillus ferrooxidans ATCC 23270 7136605 YP_002427206.1 CDS glgB NC_011761.1 2518511 2520709 R identified by match to protein family HMM PF00128; match to protein family HMM PF02806; match to protein family HMM PF02922; match to protein family HMM TIGR01515; 1,4-alpha-glucan-branching protein complement(2518511..2520709) Acidithiobacillus ferrooxidans ATCC 23270 7134180 YP_002427207.1 CDS AFE_2837 NC_011761.1 2520663 2520866 R identified by glimmer; putative; hypothetical protein complement(2520663..2520866) Acidithiobacillus ferrooxidans ATCC 23270 7134423 YP_002427208.1 CDS glgC NC_011761.1 2520952 2522259 D identified by match to protein family HMM PF00483; match to protein family HMM TIGR02091; glucose-1-phosphate adenylyltransferase 2520952..2522259 Acidithiobacillus ferrooxidans ATCC 23270 7137308 YP_002427209.1 CDS AFE_2839 NC_011761.1 2522265 2523971 D identified by match to protein family HMM PF03065; glycoside hydrolase 2522265..2523971 Acidithiobacillus ferrooxidans ATCC 23270 7137102 YP_002427210.1 CDS AFE_2840 NC_011761.1 2523968 2525986 D identified by match to protein family HMM PF03065; match to protein family HMM PF09095; glycoside hydrolase 2523968..2525986 Acidithiobacillus ferrooxidans ATCC 23270 7135758 YP_002427211.1 CDS AFE_2841 NC_011761.1 2525979 2526926 D identified by match to protein family HMM PF00480; ROK family protein 2525979..2526926 Acidithiobacillus ferrooxidans ATCC 23270 7136178 YP_002427212.1 CDS murI NC_011761.1 2526926 2527735 D identified by match to protein family HMM PF01177; match to protein family HMM TIGR00067; glutamate racemase 2526926..2527735 Acidithiobacillus ferrooxidans ATCC 23270 7137154 YP_002427213.1 CDS AFE_2843 NC_011761.1 2527748 2529040 R identified by similarity to GB:AAM41637.1; match to protein family HMM PF04286; hypothetical protein complement(2527748..2529040) Acidithiobacillus ferrooxidans ATCC 23270 7136330 YP_002427214.1 CDS AFE_2844 NC_011761.1 2529207 2529395 D hypothetical protein 2529207..2529395 Acidithiobacillus ferrooxidans ATCC 23270 7135793 YP_002427215.1 CDS ssb-1 NC_011761.1 2529538 2530008 R identified by similarity to SP:P28046; match to protein family HMM PF00436; match to protein family HMM TIGR00621; single-strand binding protein complement(2529538..2530008) Acidithiobacillus ferrooxidans ATCC 23270 7135230 YP_002427216.1 CDS uvrA NC_011761.1 2530095 2532899 D identified by match to protein family HMM PF00005; match to protein family HMM TIGR00630; excinuclease ABC subunit A 2530095..2532899 Acidithiobacillus ferrooxidans ATCC 23270 7137029 YP_002427217.1 CDS AFE_2846 NC_011761.1 2532872 2533612 R identified by glimmer; putative; hypothetical protein complement(2532872..2533612) Acidithiobacillus ferrooxidans ATCC 23270 7136643 YP_002427218.1 CDS AFE_2848 NC_011761.1 2533634 2534503 D identified by match to protein family HMM PF00085; match to protein family HMM TIGR01068; thioredoxin 2533634..2534503 Acidithiobacillus ferrooxidans ATCC 23270 7134096 YP_002427219.1 CDS AFE_2849 NC_011761.1 2534640 2536160 D identified by similarity to GB:AAN67052.1; match to protein family HMM PF00089; match to protein family HMM PF00595; match to protein family HMM TIGR02037; serine protease, DO/DeqQ family 2534640..2536160 Acidithiobacillus ferrooxidans ATCC 23270 7134523 YP_002427220.1 CDS xerD NC_011761.1 2536180 2537088 R identified by similarity to SP:P21891; match to protein family HMM PF00589; match to protein family HMM PF02899; match to protein family HMM TIGR02225; tyrosine recombinase XerD complement(2536180..2537088) Acidithiobacillus ferrooxidans ATCC 23270 7134491 YP_002427221.1 CDS AFE_2851 NC_011761.1 2537140 2538348 R identified by glimmer; putative; hypothetical protein complement(2537140..2538348) Acidithiobacillus ferrooxidans ATCC 23270 7135483 YP_002427222.1 CDS rplS NC_011761.1 2538390 2538734 R identified by similarity to SP:P02420; match to protein family HMM PF01245; match to protein family HMM TIGR01024; 50S ribosomal protein L19 complement(2538390..2538734) Acidithiobacillus ferrooxidans ATCC 23270 7134694 YP_002427223.1 CDS trmD NC_011761.1 2538757 2539500 R identified by similarity to SP:P07020; match to protein family HMM PF01746; match to protein family HMM TIGR00088; tRNA (guanine-N1)-methyltransferase complement(2538757..2539500) Acidithiobacillus ferrooxidans ATCC 23270 7134967 YP_002427224.1 CDS rimM NC_011761.1 2539500 2540015 R identified by match to protein family HMM PF01782; match to protein family HMM PF05239; match to protein family HMM TIGR02273; 16S rRNA processing protein RimM complement(2539500..2540015) Acidithiobacillus ferrooxidans ATCC 23270 7137081 YP_002427225.1 CDS rpsP NC_011761.1 2539999 2540259 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(2539999..2540259) Acidithiobacillus ferrooxidans ATCC 23270 7135048 YP_002427226.1 CDS ffh NC_011761.1 2540330 2541706 R identified by similarity to SP:P07019; match to protein family HMM PF00448; match to protein family HMM PF02881; match to protein family HMM PF02978; match to protein family HMM TIGR00959; signal recognition particle protein complement(2540330..2541706) Acidithiobacillus ferrooxidans ATCC 23270 7134761 YP_002427227.1 CDS arsH NC_011761.1 2541813 2542526 R identified by similarity to GB:AAF69240.1; match to protein family HMM PF03358; match to protein family HMM TIGR02690; arsenical resistance protein ArsH complement(2541813..2542526) Acidithiobacillus ferrooxidans ATCC 23270 7135692 YP_002427228.1 CDS arsB NC_011761.1 2542541 2543851 R identified by similarity to GB:AAF69238.1; match to protein family HMM PF02040; match to protein family HMM PF03600; match to protein family HMM TIGR00935; arsenical pump membrane protein complement(2542541..2543851) Acidithiobacillus ferrooxidans ATCC 23270 7136047 YP_002427229.1 CDS arsR NC_011761.1 2543945 2544301 D identified by match to protein family HMM PF01022; transcriptional regulator ArsR 2543945..2544301 Acidithiobacillus ferrooxidans ATCC 23270 7137130 YP_002427230.1 CDS arsC NC_011761.1 2544301 2544792 D identified by similarity to GB:AAF69239.1; match to protein family HMM PF01451; arsenate reductase 2544301..2544792 Acidithiobacillus ferrooxidans ATCC 23270 7136377 YP_002427231.1 CDS AFE_2861 NC_011761.1 2545040 2546077 D identified by match to protein family HMM PF00529; secretion protein, HlyD family 2545040..2546077 Acidithiobacillus ferrooxidans ATCC 23270 7136644 YP_002427232.1 CDS AFE_2862 NC_011761.1 2546081 2547859 D identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein 2546081..2547859 Acidithiobacillus ferrooxidans ATCC 23270 7134379 YP_002427233.1 CDS AFE_2863 NC_011761.1 2547856 2548971 D identified by similarity to SP:P75775; match to protein family HMM PF01061; ABC transporter permease 2547856..2548971 Acidithiobacillus ferrooxidans ATCC 23270 7135469 YP_002427234.1 CDS AFE_2864 NC_011761.1 2548971 2550080 D identified by similarity to SP:P75774; match to protein family HMM PF01061; ABC transporter permease 2548971..2550080 Acidithiobacillus ferrooxidans ATCC 23270 7134179 YP_002427235.1 CDS AFE_2865 NC_011761.1 2550043 2550432 D identified by glimmer; putative; hypothetical protein 2550043..2550432 Acidithiobacillus ferrooxidans ATCC 23270 7134270 YP_002427236.1 CDS AFE_2866 NC_011761.1 2550444 2550725 R identified by glimmer; putative; hypothetical protein complement(2550444..2550725) Acidithiobacillus ferrooxidans ATCC 23270 7134582 YP_002427237.1 CDS AFE_2867 NC_011761.1 2550953 2551216 R thioredoxin family protein complement(2550953..2551216) Acidithiobacillus ferrooxidans ATCC 23270 7134744 YP_002427238.1 CDS AFE_2868 NC_011761.1 2551275 2551736 D identified by similarity to PIR:D70379; match to protein family HMM PF01814; hypothetical protein 2551275..2551736 Acidithiobacillus ferrooxidans ATCC 23270 7136208 YP_002427239.1 CDS AFE_2869 NC_011761.1 2551729 2552175 D identified by similarity to SP:P23884; match to protein family HMM PF01597; glycine cleavage system H protein 2551729..2552175 Acidithiobacillus ferrooxidans ATCC 23270 7136362 YP_002427240.1 CDS AFE_2870 NC_011761.1 2552221 2552730 R identified by glimmer; putative; hypothetical protein complement(2552221..2552730) Acidithiobacillus ferrooxidans ATCC 23270 7136231 YP_002427241.1 CDS AFE_2871 NC_011761.1 2552735 2552845 R identified by glimmer; putative; hypothetical protein complement(2552735..2552845) Acidithiobacillus ferrooxidans ATCC 23270 7135122 YP_002427242.1 CDS AFE_2872 NC_011761.1 2553045 2553479 R identified by similarity to GB:CAD77926.1; match to protein family HMM PF02643; hypothetical protein complement(2553045..2553479) Acidithiobacillus ferrooxidans ATCC 23270 7136074 YP_002427243.1 CDS AFE_2873 NC_011761.1 2555038 2555226 R identified by glimmer; putative; hypothetical protein complement(2555038..2555226) Acidithiobacillus ferrooxidans ATCC 23270 7136070 YP_002427244.1 CDS AFE_2874 NC_011761.1 2555494 2555601 R identified by glimmer; putative; hypothetical protein complement(2555494..2555601) Acidithiobacillus ferrooxidans ATCC 23270 7134910 YP_002427245.1 CDS AFE_2875 NC_011761.1 2555628 2556551 R identified by match to protein family HMM PF00126; match to protein family HMM PF03466; LysR family transcriptional regulator complement(2555628..2556551) Acidithiobacillus ferrooxidans ATCC 23270 7134688 YP_002427246.1 CDS AFE_2876 NC_011761.1 2556664 2557287 D identified by similarity to GB:AAM72097.1; hypothetical protein 2556664..2557287 Acidithiobacillus ferrooxidans ATCC 23270 7136240 YP_002427247.1 CDS AFE_2878 NC_011761.1 2558049 2558165 D identified by glimmer; putative; hypothetical protein 2558049..2558165 Acidithiobacillus ferrooxidans ATCC 23270 7135736 YP_002427248.1 CDS AFE_2877 NC_011761.1 2558152 2560263 R identified by similarity to SP:P76393; hypothetical protein complement(2558152..2560263) Acidithiobacillus ferrooxidans ATCC 23270 7135894 YP_002427249.1 CDS AFE_2879 NC_011761.1 2560260 2561024 R identified by similarity to SP:P76395; hypothetical protein complement(2560260..2561024) Acidithiobacillus ferrooxidans ATCC 23270 7134481 YP_002427250.1 CDS AFE_2880 NC_011761.1 2561031 2561708 R identified by match to protein family HMM PF00092; von Willebrand factor type A domain-containing protein complement(2561031..2561708) Acidithiobacillus ferrooxidans ATCC 23270 7134370 YP_002427251.1 CDS AFE_2882 NC_011761.1 2562800 2563726 R identified by match to protein family HMM PF03167; match to protein family HMM TIGR00758; uracil-DNA glycosylase complement(2562800..2563726) Acidithiobacillus ferrooxidans ATCC 23270 7134698 YP_002427252.1 CDS AFE_2883 NC_011761.1 2563893 2564963 D identified by similarity to SP:P54965; match to protein family HMM PF02275; choloylglycine hydrolase 2563893..2564963 Acidithiobacillus ferrooxidans ATCC 23270 7134721 YP_002427253.1 CDS AFE_2884 NC_011761.1 2564977 2565123 R identified by glimmer; putative; hypothetical protein complement(2564977..2565123) Acidithiobacillus ferrooxidans ATCC 23270 7136740 YP_002427254.1 CDS AFE_2885 NC_011761.1 2565176 2565559 R identified by similarity to SP:P13976; match to protein family HMM PF02452; PemK family protein complement(2565176..2565559) Acidithiobacillus ferrooxidans ATCC 23270 7136919 YP_002427255.1 CDS AFE_2886 NC_011761.1 2565556 2565807 R identified by similarity to SP:P18534; match to protein family HMM PF04014; PemI family protein complement(2565556..2565807) Acidithiobacillus ferrooxidans ATCC 23270 7134185 YP_002427256.1 CDS AFE_2887 NC_011761.1 2565965 2566708 D identified by glimmer; putative; hypothetical protein 2565965..2566708 Acidithiobacillus ferrooxidans ATCC 23270 7135989 YP_002427257.1 CDS AFE_2888 NC_011761.1 2566811 2567227 R identified by match to protein family HMM PF01850; PIN domain-containing protein complement(2566811..2567227) Acidithiobacillus ferrooxidans ATCC 23270 7134524 YP_002427258.1 CDS AFE_2889 NC_011761.1 2567214 2567447 R identified by match to protein family HMM PF04014; AbrB family transcriptional regulator complement(2567214..2567447) Acidithiobacillus ferrooxidans ATCC 23270 7134590 YP_002427259.1 CDS AFE_2890 NC_011761.1 2567446 2567706 D identified by glimmer; putative; hypothetical protein 2567446..2567706 Acidithiobacillus ferrooxidans ATCC 23270 7134859 YP_002427260.1 CDS AFE_2891 NC_011761.1 2567803 2568153 D identified by similarity to GB:AAM41875.1; hypothetical protein 2567803..2568153 Acidithiobacillus ferrooxidans ATCC 23270 7134084 YP_002427261.1 CDS AFE_2893 NC_011761.1 2568250 2570112 D identified by match to protein family HMM PF00005; match to protein family HMM PF02463; ABC transporter ATP-binding protein 2568250..2570112 Acidithiobacillus ferrooxidans ATCC 23270 7136436 YP_002427262.1 CDS AFE_2892 NC_011761.1 2570109 2570411 R identified by similarity to PIR:A95333; hypothetical protein complement(2570109..2570411) Acidithiobacillus ferrooxidans ATCC 23270 7136596 YP_002427263.1 CDS AFE_2894 NC_011761.1 2570425 2570688 R identified by glimmer; putative; hypothetical protein complement(2570425..2570688) Acidithiobacillus ferrooxidans ATCC 23270 7135615 YP_002427264.1 CDS AFE_2895 NC_011761.1 2570733 2572487 R identified by similarity to SP:P04286; match to protein family HMM PF00905; match to protein family HMM PF03717; peptidoglycan synthetase FtsI complement(2570733..2572487) Acidithiobacillus ferrooxidans ATCC 23270 7135430 YP_002427265.1 CDS AFE_2896 NC_011761.1 2572636 2574696 R identified by match to protein family HMM PF04932; O-antigen polymerase family protein complement(2572636..2574696) Acidithiobacillus ferrooxidans ATCC 23270 7135955 YP_002427266.1 CDS AFE_2897 NC_011761.1 2574693 2574926 R identified by glimmer; putative; hypothetical protein complement(2574693..2574926) Acidithiobacillus ferrooxidans ATCC 23270 7134054 YP_002427267.1 CDS ispB NC_011761.1 2575100 2576068 R identified by similarity to SP:P19641; match to protein family HMM PF00348; octaprenyl-diphosphate synthase complement(2575100..2576068) Acidithiobacillus ferrooxidans ATCC 23270 7135839 YP_002427268.1 CDS AFE_2900 NC_011761.1 2576177 2577133 R identified by similarity to GB:AAC41400.1; hypothetical protein complement(2576177..2577133) Acidithiobacillus ferrooxidans ATCC 23270 7137161 YP_002427269.1 CDS ntrC NC_011761.1 2577223 2578629 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; match to protein family HMM PF02954; match to protein family HMM PF07728; match to protein family HMM TIGR01818; nitrogen regulation protein NR(I) complement(2577223..2578629) Acidithiobacillus ferrooxidans ATCC 23270 7136313 YP_002427270.1 CDS ntrB NC_011761.1 2578626 2579711 R identified by similarity to SP:P06218; match to protein family HMM PF00512; match to protein family HMM PF02518; match to protein family HMM PF08448; nitrogen regulation protein NR(II) complement(2578626..2579711) Acidithiobacillus ferrooxidans ATCC 23270 7134866 YP_002427271.1 CDS AFE_2903 NC_011761.1 2580021 2580791 D identified by similarity to PIR:F83429; hypothetical protein 2580021..2580791 Acidithiobacillus ferrooxidans ATCC 23270 7135276 YP_002427272.1 CDS AFE_2904 NC_011761.1 2580788 2580985 D identified by glimmer; putative; hypothetical protein 2580788..2580985 Acidithiobacillus ferrooxidans ATCC 23270 7134818 YP_002427273.1 CDS AFE_2905 NC_011761.1 2581107 2582570 D identified by similarity to SP:Q55587; match to protein family HMM PF04169; match to protein family HMM PF04174; hypothetical protein 2581107..2582570 Acidithiobacillus ferrooxidans ATCC 23270 7136827 YP_002427274.1 CDS AFE_2906 NC_011761.1 2582555 2583541 D identified by similarity to GB:CAE19498.1; match to protein family HMM PF04168; hypothetical protein 2582555..2583541 Acidithiobacillus ferrooxidans ATCC 23270 7137295 YP_002427275.1 CDS AFE_2907 NC_011761.1 2583581 2586943 D identified by match to protein family HMM PF01841; match to protein family HMM PF08379; transglutaminase 2583581..2586943 Acidithiobacillus ferrooxidans ATCC 23270 7135460 YP_002427276.1 CDS AFE_2908 NC_011761.1 2587096 2587233 R identified by glimmer; putative; hypothetical protein complement(2587096..2587233) Acidithiobacillus ferrooxidans ATCC 23270 7136918 YP_002427277.1 CDS AFE_2910 NC_011761.1 2587401 2589335 D identified by match to protein family HMM PF06798; match to protein family HMM PF08298; hypothetical protein 2587401..2589335 Acidithiobacillus ferrooxidans ATCC 23270 7135037 YP_002427278.1 CDS AFE_2909 NC_011761.1 2589332 2589466 R identified by glimmer; putative; hypothetical protein complement(2589332..2589466) Acidithiobacillus ferrooxidans ATCC 23270 7137293 YP_002427279.1 CDS amt-2 NC_011761.1 2589616 2590932 D identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 2589616..2590932 Acidithiobacillus ferrooxidans ATCC 23270 7135730 YP_002427280.1 CDS AFE_2912 NC_011761.1 2591034 2592338 D identified by similarity to SP:Q8Z6E7; match to protein family HMM PF04285; hypothetical protein 2591034..2592338 Acidithiobacillus ferrooxidans ATCC 23270 7135381 YP_002427281.1 CDS AFE_2913 NC_011761.1 2592331 2593806 D identified by match to protein family HMM PF04293; SpoVR family protein 2592331..2593806 Acidithiobacillus ferrooxidans ATCC 23270 7136173 YP_002427282.1 CDS AFE_2914 NC_011761.1 2593988 2595160 D identified by glimmer; putative; hypothetical protein 2593988..2595160 Acidithiobacillus ferrooxidans ATCC 23270 7136675 YP_002427283.1 CDS glnK-1 NC_011761.1 2595214 2595552 D identified by similarity to SP:P38504; match to protein family HMM PF00543; nitrogen regulatory protein P-II 2 2595214..2595552 Acidithiobacillus ferrooxidans ATCC 23270 7136353 YP_002427284.1 CDS amt-1 NC_011761.1 2595607 2596911 D identified by match to protein family HMM PF00909; match to protein family HMM TIGR00836; ammonium transporter 2595607..2596911 Acidithiobacillus ferrooxidans ATCC 23270 7136847 YP_002427285.1 CDS AFE_2917 NC_011761.1 2597010 2597723 D identified by match to protein family HMM PF00117; glutamine amidotransferase class-I domain-containing protein 2597010..2597723 Acidithiobacillus ferrooxidans ATCC 23270 7136606 YP_002427286.1 CDS AFE_2918 NC_011761.1 2597728 2598114 R lipoprotein complement(2597728..2598114) Acidithiobacillus ferrooxidans ATCC 23270 7134037 YP_002427287.1 CDS AFE_2919 NC_011761.1 2598362 2598733 D identified by match to protein family HMM PF05433; lipoprotein 2598362..2598733 Acidithiobacillus ferrooxidans ATCC 23270 7136366 YP_002427288.1 CDS AFE_2921 NC_011761.1 2599051 2600136 D identified by similarity to SP:P10100; match to protein family HMM PF03330; match to protein family HMM TIGR00413; rare lipoprotein A 2599051..2600136 Acidithiobacillus ferrooxidans ATCC 23270 7134462 YP_002427289.1 CDS AFE_2920 NC_011761.1 2600117 2600416 R identified by similarity to GB:AAM72618.1; hypothetical protein complement(2600117..2600416) Acidithiobacillus ferrooxidans ATCC 23270 7134780 YP_002427290.1 CDS AFE_2922 NC_011761.1 2600422 2601648 R identified by similarity to SP:P31069; match to protein family HMM PF02254; match to protein family HMM PF07885; voltage-gated potassium channel complement(2600422..2601648) Acidithiobacillus ferrooxidans ATCC 23270 7134791 YP_002427291.1 CDS AFE_2923 NC_011761.1 2601850 2603019 R identified by similarity to SP:P08506; match to protein family HMM PF00768; D-alanyl-D-alanine carboxypeptidase complement(2601850..2603019) Acidithiobacillus ferrooxidans ATCC 23270 7135829 YP_002427292.1 CDS pgi NC_011761.1 2603131 2604750 R identified by similarity to SP:P11537; match to protein family HMM PF00342; glucose-6-phosphate isomerase complement(2603131..2604750) Acidithiobacillus ferrooxidans ATCC 23270 7134061 YP_002427293.1 CDS AFE_2925 NC_011761.1 2605194 2606885 D identified by match to protein family HMM PF02366; dolichyl-phosphate-mannose-protein mannosyltransferase family protein 2605194..2606885 Acidithiobacillus ferrooxidans ATCC 23270 7134767 YP_002427294.1 CDS AFE_2926 NC_011761.1 2606999 2607376 D identified by match to protein family HMM PF02537; crcB protein 2606999..2607376 Acidithiobacillus ferrooxidans ATCC 23270 7134666 YP_002427295.1 CDS AFE_2927 NC_011761.1 2607387 2607704 D identified by similarity to GB:AAO90530.1; match to protein family HMM PF02641; hypothetical protein 2607387..2607704 Acidithiobacillus ferrooxidans ATCC 23270 7134788 YP_002427296.1 CDS AFE_2928 NC_011761.1 2607813 2608676 D identified by glimmer; putative; hypothetical protein 2607813..2608676 Acidithiobacillus ferrooxidans ATCC 23270 7135149 YP_002427297.1 CDS cfa NC_011761.1 2608778 2610037 D identified by match to protein family HMM PF02353; match to protein family HMM PF08241; match to protein family HMM PF08242; cyclopropane-fatty-acyl-phospholipid synthase 2608778..2610037 Acidithiobacillus ferrooxidans ATCC 23270 7135810 YP_002427298.1 CDS AFE_2930 NC_011761.1 2610131 2610712 D identified by similarity to GB:AAO81141.1; match to protein family HMM PF06736; hypothetical protein 2610131..2610712 Acidithiobacillus ferrooxidans ATCC 23270 7134594 YP_002427299.1 CDS recC NC_011761.1 2610843 2614235 D identified by match to protein family HMM PF04257; match to protein family HMM TIGR01450; exodeoxyribonuclease V subunit gamma 2610843..2614235 Acidithiobacillus ferrooxidans ATCC 23270 7134920 YP_002427300.1 CDS recB NC_011761.1 2614232 2617828 D identified by match to protein family HMM PF00580; match to protein family HMM TIGR00609; exodeoxyribonuclease V subunit beta 2614232..2617828 Acidithiobacillus ferrooxidans ATCC 23270 7135613 YP_002427301.1 CDS recD NC_011761.1 2617837 2619777 D identified by match to protein family HMM TIGR01447; exodeoxyribonuclease V subunit alpha 2617837..2619777 Acidithiobacillus ferrooxidans ATCC 23270 7134529 YP_002427302.1 CDS AFE_2934 NC_011761.1 2620110 2620874 D identified by match to protein family HMM PF00486; transcriptional regulator 2620110..2620874 Acidithiobacillus ferrooxidans ATCC 23270 7135054 YP_002427303.1 CDS AFE_2935 NC_011761.1 2620987 2623392 D identified by match to protein family HMM PF00593; TonB-dependent receptor 2620987..2623392 Acidithiobacillus ferrooxidans ATCC 23270 7134410 YP_002427304.1 CDS AFE_2936 NC_011761.1 2623588 2625240 D hypothetical protein 2623588..2625240 Acidithiobacillus ferrooxidans ATCC 23270 7137266 YP_002427305.1 CDS AFE_2938 NC_011761.1 2626963 2627310 R identified by match to protein family HMM PF05717; ISAfe4, transposase orf2 complement(2626963..2627310) Acidithiobacillus ferrooxidans ATCC 23270 7137281 YP_002427306.1 CDS AFE_2939 NC_011761.1 2627301 2627633 R Assignment based on BLAST search at the ISFinder database, and proximity to other transposase ORFs.; ISAfe4, transposase orf1 complement(2627301..2627633) Acidithiobacillus ferrooxidans ATCC 23270 7134796 YP_002427307.1 CDS AFE_2940 NC_011761.1 2627701 2628435 D TonB-dependent receptor domain-containing protein 2627701..2628435 Acidithiobacillus ferrooxidans ATCC 23270 7135926 YP_002427308.1 CDS AFE_2942 NC_011761.1 2628629 2629207 D identified by glimmer; putative; hypothetical protein 2628629..2629207 Acidithiobacillus ferrooxidans ATCC 23270 7136614 YP_002427309.1 CDS AFE_2941 NC_011761.1 2629162 2629293 R identified by glimmer; putative; hypothetical protein complement(2629162..2629293) Acidithiobacillus ferrooxidans ATCC 23270 7135818 YP_002427310.1 CDS AFE_2943 NC_011761.1 2629355 2629639 D identified by glimmer; putative; hypothetical protein 2629355..2629639 Acidithiobacillus ferrooxidans ATCC 23270 7134229 YP_002427311.1 CDS AFE_2944 NC_011761.1 2630001 2632577 R identified by match to protein family HMM PF00122; match to protein family HMM PF00702; match to protein family HMM TIGR01494; cation transporting P-type ATPase complement(2630001..2632577) Acidithiobacillus ferrooxidans ATCC 23270 7137227 YP_002427312.1 CDS msrB NC_011761.1 2632726 2633151 R identified by similarity to SP:P39903; match to protein family HMM PF01641; match to protein family HMM TIGR00357; methionine-R-sulfoxide reductase complement(2632726..2633151) Acidithiobacillus ferrooxidans ATCC 23270 7134207 YP_002427313.1 CDS msrA NC_011761.1 2633157 2633753 R identified by match to protein family HMM PF01625; match to protein family HMM TIGR00401; peptide-methionine (S)-S-oxide reductase complement(2633157..2633753) Acidithiobacillus ferrooxidans ATCC 23270 7136289 YP_002427314.1 CDS AFE_2947 NC_011761.1 2633905 2634813 D identified by similarity to SP:P77202; thiol:disulfide interchange protein DsbG 2633905..2634813 Acidithiobacillus ferrooxidans ATCC 23270 7137198 YP_002427315.1 CDS nadD NC_011761.1 2634873 2635529 D identified by similarity to SP:P52085; match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR00482; nicotinate (nicotinamide) nucleotide adenylyltransferase 2634873..2635529 Acidithiobacillus ferrooxidans ATCC 23270 7135904 YP_002427316.1 CDS AFE_2949 NC_011761.1 2635553 2635909 D identified by match to protein family HMM PF02410; match to protein family HMM TIGR00090; iojap family protein 2635553..2635909 Acidithiobacillus ferrooxidans ATCC 23270 7134430 YP_002427317.1 CDS AFE_2950 NC_011761.1 2635916 2636389 D SPOUT methyltransferase family protein; crystal structure shows homodimer; in Escherichia coli this protein methylates pseudouridine at position 1915 of the 23S ribosomal RNA; rRNA large subunit methyltransferase 2635916..2636389 Acidithiobacillus ferrooxidans ATCC 23270 7136959 YP_002427318.1 CDS AFE_2951 NC_011761.1 2636403 2636834 D lipoprotein 2636403..2636834 Acidithiobacillus ferrooxidans ATCC 23270 7136753 YP_002427319.1 CDS AFE_2952 NC_011761.1 2636834 2637712 D identified by glimmer; putative; hypothetical protein 2636834..2637712 Acidithiobacillus ferrooxidans ATCC 23270 7134198 YP_002427320.1 CDS maf-1 NC_011761.1 2637709 2638296 D identified by match to protein family HMM PF02545; match to protein family HMM TIGR00172; maf protein 2637709..2638296 Acidithiobacillus ferrooxidans ATCC 23270 7134839 YP_002427321.1 CDS AFE_2954 NC_011761.1 2638293 2639783 D identified by match to protein family HMM PF00575; match to protein family HMM TIGR00757; ribonuclease, Rne/Rng family 2638293..2639783 Acidithiobacillus ferrooxidans ATCC 23270 7135093 YP_002427322.1 CDS AFE_2955 NC_011761.1 2639809 2641182 R identified by match to protein family HMM PF00072; match to protein family HMM PF00158; sigma-54 dependent DNA-binding response regulator complement(2639809..2641182) Acidithiobacillus ferrooxidans ATCC 23270 7135582 YP_002427323.1 CDS AFE_2956 NC_011761.1 2641189 2641653 R identified by glimmer; putative; hypothetical protein complement(2641189..2641653) Acidithiobacillus ferrooxidans ATCC 23270 7137018 YP_002427324.1 CDS AFE_2957 NC_011761.1 2641481 2643001 R identified by match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; sensor histidine kinase complement(2641481..2643001) Acidithiobacillus ferrooxidans ATCC 23270 7134138 YP_002427325.1 CDS AFE_2958 NC_011761.1 2643000 2643635 D identified by glimmer; putative; hypothetical protein 2643000..2643635 Acidithiobacillus ferrooxidans ATCC 23270 7136546 YP_002427326.1 CDS AFE_2959 NC_011761.1 2643724 2644005 R identified by similarity to GB:AAQ61020.1; match to protein family HMM PF04362; hypothetical protein complement(2643724..2644005) Acidithiobacillus ferrooxidans ATCC 23270 7134887 YP_002427327.1 CDS AFE_2960 NC_011761.1 2644457 2645929 D identified by match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 2644457..2645929 Acidithiobacillus ferrooxidans ATCC 23270 7136906 YP_002427328.1 CDS AFE_2961 NC_011761.1 2645950 2647065 D identified by similarity to SP:P32014; capsule polysaccharide export inner-membrane protein 2645950..2647065 Acidithiobacillus ferrooxidans ATCC 23270 7134571 YP_002427329.1 CDS ctrC NC_011761.1 2647404 2648249 D identified by similarity to SP:P32015; match to protein family HMM PF01061; capsule polysaccharide exporter, inner-membrane protein CtrC 2647404..2648249 Acidithiobacillus ferrooxidans ATCC 23270 7135131 YP_002427330.1 CDS ctrD NC_011761.1 2648246 2648899 D identified by similarity to SP:P32016; match to protein family HMM PF00005; capsule polysaccharide exporter, ATP-binding protein 2648246..2648899 Acidithiobacillus ferrooxidans ATCC 23270 7135915 YP_002427331.1 CDS AFE_2964 NC_011761.1 2648991 2649740 D identified by match to protein family HMM TIGR01444; methyltransferase 2648991..2649740 Acidithiobacillus ferrooxidans ATCC 23270 7134606 YP_002427332.1 CDS AFE_2965 NC_011761.1 2649792 2650433 D identified by glimmer; putative; hypothetical protein 2649792..2650433 Acidithiobacillus ferrooxidans ATCC 23270 7135827 YP_002427333.1 CDS AFE_2966 NC_011761.1 2650382 2650552 D identified by glimmer; putative; hypothetical protein 2650382..2650552 Acidithiobacillus ferrooxidans ATCC 23270 7135721 YP_002427334.1 CDS AFE_2967 NC_011761.1 2650455 2656202 D identified by match to protein family HMM PF00534; group 1 glycosyl transferase 2650455..2656202 Acidithiobacillus ferrooxidans ATCC 23270 7135422 YP_002427335.1 CDS AFE_2968 NC_011761.1 2656290 2657861 D identified by glimmer; putative; hypothetical protein 2656290..2657861 Acidithiobacillus ferrooxidans ATCC 23270 7135044 YP_002427336.1 CDS AFE_2969 NC_011761.1 2657861 2658676 D identified by glimmer; putative; hypothetical protein 2657861..2658676 Acidithiobacillus ferrooxidans ATCC 23270 7136660 YP_002427337.1 CDS cysD-1 NC_011761.1 2658831 2659712 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 2658831..2659712 Acidithiobacillus ferrooxidans ATCC 23270 7136964 YP_002427338.1 CDS cysNC NC_011761.1 2659712 2661526 D identified by match to protein family HMM PF00009; match to protein family HMM PF01583; match to protein family HMM PF03144; match to protein family HMM TIGR00455; match to protein family HMM TIGR02034; sulfate adenylyltransferase 2659712..2661526 Acidithiobacillus ferrooxidans ATCC 23270 7136466 YP_002427339.1 CDS AFE_2972 NC_011761.1 2661596 2662822 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISAfe3, transposase complement(2661596..2662822) Acidithiobacillus ferrooxidans ATCC 23270 7137042 YP_002427340.1 CDS cysQ NC_011761.1 2663162 2663998 D identified by similarity to SP:P22255; match to protein family HMM PF00459; match to protein family HMM TIGR01331; 3'(2'),5'-bisphosphate nucleotidase 2663162..2663998 Acidithiobacillus ferrooxidans ATCC 23270 7135486 YP_002427341.1 CDS AFE_2974 NC_011761.1 2663976 2665733 D identified by similarity to GB:AAO77300.1; hypothetical protein 2663976..2665733 Acidithiobacillus ferrooxidans ATCC 23270 7135962 YP_002427342.1 CDS AFE_2975 NC_011761.1 2665813 2666985 D identified by similarity to SP:P22236; match to protein family HMM PF02563; capsule polysaccharide export protein, BexD/CtrA/VexA family 2665813..2666985 Acidithiobacillus ferrooxidans ATCC 23270 7135651 YP_002427343.1 CDS AFE_2976 NC_011761.1 2666999 2668168 D identified by match to protein family HMM PF00534; group 1 glycosyl transferase 2666999..2668168 Acidithiobacillus ferrooxidans ATCC 23270 7135052 YP_002427344.1 CDS gmd-1 NC_011761.1 2668314 2669333 D identified by similarity to SP:Q51366; match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase 2668314..2669333 Acidithiobacillus ferrooxidans ATCC 23270 7136587 YP_002427345.1 CDS AFE_2978 NC_011761.1 2669424 2670116 D identified by match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein 2669424..2670116 Acidithiobacillus ferrooxidans ATCC 23270 7134170 YP_002427346.1 CDS AFE_2979 NC_011761.1 2670125 2670943 D identified by similarity to GB:AAF04382.1; match to protein family HMM PF08241; match to protein family HMM PF08242; WbbD domain-containing protein 2670125..2670943 Acidithiobacillus ferrooxidans ATCC 23270 7137046 YP_002427347.1 CDS AFE_2980 NC_011761.1 2670987 2671283 D identified by glimmer; putative; hypothetical protein 2670987..2671283 Acidithiobacillus ferrooxidans ATCC 23270 7137013 YP_002427348.1 CDS AFE_2981 NC_011761.1 2671270 2671395 D identified by glimmer; putative; hypothetical protein 2671270..2671395 Acidithiobacillus ferrooxidans ATCC 23270 7136117 YP_002427349.1 CDS AFE_2982 NC_011761.1 2671392 2671529 D identified by similarity to GB:AAP84138.1; hypothetical protein 2671392..2671529 Acidithiobacillus ferrooxidans ATCC 23270 7134296 YP_002427350.1 CDS AFE_2983 NC_011761.1 2671682 2671924 D identified by similarity to SP:Q06253; match to protein family HMM TIGR01552; prevent-host-death family protein 2671682..2671924 Acidithiobacillus ferrooxidans ATCC 23270 7134734 YP_002427351.1 CDS AFE_2984 NC_011761.1 2671924 2672376 D identified by match to protein family HMM PF01850; PIN domain-containing protein 2671924..2672376 Acidithiobacillus ferrooxidans ATCC 23270 7136298 YP_002427352.1 CDS AFE_2985 NC_011761.1 2672501 2674357 R identified by match to protein family HMM PF00005; match to protein family HMM PF00664; ABC transporter permease/ATP-binding protein complement(2672501..2674357) Acidithiobacillus ferrooxidans ATCC 23270 7135106 YP_002427353.1 CDS AFE_2986 NC_011761.1 2674419 2674856 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(2674419..2674856) Acidithiobacillus ferrooxidans ATCC 23270 7134518 YP_002427354.1 CDS AFE_2987 NC_011761.1 2674880 2676511 R identified by similarity to SP:P42061; match to protein family HMM PF00496; peptide ABC transporter substrate-binding protein complement(2674880..2676511) Acidithiobacillus ferrooxidans ATCC 23270 7134071 YP_002427355.1 CDS AFE_2988 NC_011761.1 2676618 2677628 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; peptide ABC transporter ATP-binding protein complement(2676618..2677628) Acidithiobacillus ferrooxidans ATCC 23270 7137223 YP_002427356.1 CDS AFE_2989 NC_011761.1 2677625 2678626 R identified by match to protein family HMM PF00005; match to protein family HMM PF08352; match to protein family HMM TIGR01727; peptide ABC transporter ATP-binding protein complement(2677625..2678626) Acidithiobacillus ferrooxidans ATCC 23270 7136646 YP_002427357.1 CDS AFE_2990 NC_011761.1 2678694 2679584 R identified by match to protein family HMM PF00528; peptide ABC transporter permease complement(2678694..2679584) Acidithiobacillus ferrooxidans ATCC 23270 7135245 YP_002427358.1 CDS AFE_2991 NC_011761.1 2679598 2680557 R identified by similarity to SP:P50989; match to protein family HMM PF00528; peptide ABC transporter permease complement(2679598..2680557) Acidithiobacillus ferrooxidans ATCC 23270 7135561 YP_002427359.1 CDS AFE_2992 NC_011761.1 2680603 2682099 R identified by similarity to SP:P42061; match to protein family HMM PF00496; peptide ABC transporter substrate-binding protein complement(2680603..2682099) Acidithiobacillus ferrooxidans ATCC 23270 7134897 YP_002427360.1 CDS AFE_2993 NC_011761.1 2682243 2684084 R identified by similarity to GB:AAM36869.1; hypothetical protein complement(2682243..2684084) Acidithiobacillus ferrooxidans ATCC 23270 7135244 YP_002427361.1 CDS AFE_2994 NC_011761.1 2684077 2686020 R identified by similarity to GB:AAM36869.1; hypothetical protein complement(2684077..2686020) Acidithiobacillus ferrooxidans ATCC 23270 7134261 YP_002427362.1 CDS AFE_2995 NC_011761.1 2686026 2686244 R identified by similarity to GB:CAD11970.1; hypothetical protein complement(2686026..2686244) Acidithiobacillus ferrooxidans ATCC 23270 7135968 YP_002427363.1 CDS AFE_2996 NC_011761.1 2686541 2686681 R identified by glimmer; putative; hypothetical protein complement(2686541..2686681) Acidithiobacillus ferrooxidans ATCC 23270 7135058 YP_002427364.1 CDS AFE_2997 NC_011761.1 2686867 2687013 R identified by glimmer; putative; hypothetical protein complement(2686867..2687013) Acidithiobacillus ferrooxidans ATCC 23270 7137027 YP_002427365.1 CDS AFE_2998 NC_011761.1 2687000 2689399 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2687000..2689399 Acidithiobacillus ferrooxidans ATCC 23270 7136508 YP_002427366.1 CDS AFE_2999 NC_011761.1 2689481 2690113 D identified by match to protein family HMM PF01914; match to protein family HMM TIGR00427; MarC family integral membrane protein 2689481..2690113 Acidithiobacillus ferrooxidans ATCC 23270 7136788 YP_002427367.1 CDS AFE_3000 NC_011761.1 2690132 2691199 D identified by similarity to SP:Q60176; match to protein family HMM PF00056; lactate/malate dehydrogenase family protein 2690132..2691199 Acidithiobacillus ferrooxidans ATCC 23270 7135088 YP_002427368.1 CDS AFE_3001 NC_011761.1 2691187 2691459 D identified by match to protein family HMM PF01842; ACT domain-containing protein 2691187..2691459 Acidithiobacillus ferrooxidans ATCC 23270 7137059 YP_002427369.1 CDS AFE_3002 NC_011761.1 2691531 2692226 D TonB family protein 2691531..2692226 Acidithiobacillus ferrooxidans ATCC 23270 7135477 YP_002427370.1 CDS AFE_3003 NC_011761.1 2692264 2692911 D identified by match to protein family HMM PF01618; MotA/TolQ/ExbB proton channel family protein 2692264..2692911 Acidithiobacillus ferrooxidans ATCC 23270 7135698 YP_002427371.1 CDS AFE_3004 NC_011761.1 2692943 2693341 D identified by match to protein family HMM PF02472; ExbD/TolR family biopolymer transport protein 2692943..2693341 Acidithiobacillus ferrooxidans ATCC 23270 7134175 YP_002427372.1 CDS AFE_3005 NC_011761.1 2693374 2693856 D identified by match to protein family HMM PF00583; GNAT family acetyltransferase 2693374..2693856 Acidithiobacillus ferrooxidans ATCC 23270 7134027 YP_002427373.1 CDS AFE_3006 NC_011761.1 2693961 2694062 D identified by glimmer; putative; hypothetical protein 2693961..2694062 Acidithiobacillus ferrooxidans ATCC 23270 7136948 YP_002427374.1 CDS AFE_3007 NC_011761.1 2694130 2694348 R identified by glimmer; putative; hypothetical protein complement(2694130..2694348) Acidithiobacillus ferrooxidans ATCC 23270 7136775 YP_002427375.1 CDS AFE_3008 NC_011761.1 2694332 2695906 D identified by match to protein family HMM PF00534; group 1 glycosyl transferase 2694332..2695906 Acidithiobacillus ferrooxidans ATCC 23270 7137162 YP_002427376.1 CDS AFE_3009 NC_011761.1 2695985 2696131 D identified by glimmer; putative; hypothetical protein 2695985..2696131 Acidithiobacillus ferrooxidans ATCC 23270 7136304 YP_002427377.1 CDS AFE_3010 NC_011761.1 2696128 2703588 D identified by similarity to GB:AAK26474.1; match to protein family HMM PF00106; match to protein family HMM PF00107; match to protein family HMM PF00109; match to protein family HMM PF00550; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM PF08240; match to protein family HMM PF08659; polyketide synthase, type I 2696128..2703588 Acidithiobacillus ferrooxidans ATCC 23270 7134855 YP_002427378.1 CDS AFE_3011 NC_011761.1 2703590 2704915 D identified by match to protein family HMM PF00155; match to protein family HMM PF00202; 8-amino-7-oxononanoate synthase 2703590..2704915 Acidithiobacillus ferrooxidans ATCC 23270 7135221 YP_002427379.1 CDS AFE_3012 NC_011761.1 2704984 2706027 D identified by match to protein family HMM PF05159; capsule polysaccharide biosynthesis protein 2704984..2706027 Acidithiobacillus ferrooxidans ATCC 23270 7134154 YP_002427380.1 CDS AFE_3013 NC_011761.1 2706024 2707334 D identified by similarity to SP:Q05014; match to protein family HMM PF05159; capsule polysaccharide modification protein 2706024..2707334 Acidithiobacillus ferrooxidans ATCC 23270 7137213 YP_002427381.1 CDS AFE_3014 NC_011761.1 2707241 2708014 D identified by match to protein family HMM PF00106; match to protein family HMM PF01370; short-chain dehydrogenase 2707241..2708014 Acidithiobacillus ferrooxidans ATCC 23270 7137143 YP_002427382.1 CDS AFE_3016 NC_011761.1 2708007 2709599 D identified by similarity to GB:CAA45491.1; match to protein family HMM PF00884; capsular polysaccharide biosynthesis protein 2708007..2709599 Acidithiobacillus ferrooxidans ATCC 23270 7136311 YP_002427383.1 CDS mutY NC_011761.1 2709573 2710682 R identified by match to protein family HMM PF00293; match to protein family HMM PF00633; match to protein family HMM PF00730; match to protein family HMM TIGR01084; A/G-specific adenine glycosylase complement(2709573..2710682) Acidithiobacillus ferrooxidans ATCC 23270 7136748 YP_002427384.1 CDS AFE_3017 NC_011761.1 2710679 2712019 R identified by glimmer; putative; hypothetical protein complement(2710679..2712019) Acidithiobacillus ferrooxidans ATCC 23270 7136202 YP_002427385.1 CDS ptsI NC_011761.1 2711949 2713661 R identified by match to protein family HMM PF00391; match to protein family HMM PF02896; match to protein family HMM PF05524; match to protein family HMM TIGR01417; phosphoenolpyruvate-protein phosphotransferase complement(2711949..2713661) Acidithiobacillus ferrooxidans ATCC 23270 7134040 YP_002427386.1 CDS ptsH NC_011761.1 2713658 2713930 R identified by similarity to SP:P23537; match to protein family HMM PF00381; match to protein family HMM TIGR01003; phosphocarrier protein HPr complement(2713658..2713930) Acidithiobacillus ferrooxidans ATCC 23270 7136547 YP_002427387.1 CDS AFE_3020 NC_011761.1 2714038 2714454 R identified by match to protein family HMM PF03610; PTS system transporter subunit IIA complement(2714038..2714454) Acidithiobacillus ferrooxidans ATCC 23270 7136093 YP_002427388.1 CDS AFE_3021 NC_011761.1 2714451 2715350 R identified by match to protein family HMM PF03668; ATPase complement(2714451..2715350) Acidithiobacillus ferrooxidans ATCC 23270 7135319 YP_002427389.1 CDS hprK NC_011761.1 2715350 2716282 R identified by match to protein family HMM PF07475; Hpr(Ser) kinase/phosphatase complement(2715350..2716282) Acidithiobacillus ferrooxidans ATCC 23270 7136261 YP_002427390.1 CDS AFE_3023 NC_011761.1 2716337 2716783 R identified by match to protein family HMM PF00359; PTS system sugar transporter subunit IIA complement(2716337..2716783) Acidithiobacillus ferrooxidans ATCC 23270 7136291 YP_002427391.1 CDS yfiA NC_011761.1 2716790 2717131 R identified by similarity to SP:P24694; match to protein family HMM PF02482; match to protein family HMM TIGR00741; ribosomal subunit interface protein complement(2716790..2717131) Acidithiobacillus ferrooxidans ATCC 23270 7134252 YP_002427392.1 CDS rpoN NC_011761.1 2717235 2718662 R identified by similarity to SP:P24695; match to protein family HMM PF00309; match to protein family HMM PF04552; match to protein family HMM PF04963; match to protein family HMM TIGR02395; RNA polymerase sigma-54 factor complement(2717235..2718662) Acidithiobacillus ferrooxidans ATCC 23270 7136549 YP_002427393.1 CDS AFE_3026 NC_011761.1 2718675 2719400 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2718675..2719400) Acidithiobacillus ferrooxidans ATCC 23270 7134865 YP_002427394.1 CDS AFE_3027 NC_011761.1 2719397 2719945 R identified by match to protein family HMM PF03968; match to protein family HMM TIGR03002; hypothetical protein complement(2719397..2719945) Acidithiobacillus ferrooxidans ATCC 23270 7137129 YP_002427395.1 CDS AFE_3028 NC_011761.1 2719917 2720486 R identified by glimmer; putative; hypothetical protein complement(2719917..2720486) Acidithiobacillus ferrooxidans ATCC 23270 7135822 YP_002427396.1 CDS kdsC NC_011761.1 2720512 2721066 R identified by similarity to SP:P45396; match to protein family HMM TIGR01662; match to protein family HMM TIGR01670; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(2720512..2721066) Acidithiobacillus ferrooxidans ATCC 23270 7135345 YP_002427397.1 CDS AFE_3030 NC_011761.1 2721063 2722049 R identified by similarity to SP:P45395; match to protein family HMM PF00571; match to protein family HMM PF01380; match to protein family HMM TIGR00393; sugar isomerase, KpsF/GutQ family complement(2721063..2722049) Acidithiobacillus ferrooxidans ATCC 23270 7135491 YP_002427398.1 CDS AFE_3031 NC_011761.1 2722369 2722803 R identified by glimmer; putative; hypothetical protein complement(2722369..2722803) Acidithiobacillus ferrooxidans ATCC 23270 7136921 YP_002427399.1 CDS AFE_3032 NC_011761.1 2722793 2723482 R identified by match to protein family HMM PF00483; nucleotidyltransferase family protein complement(2722793..2723482) Acidithiobacillus ferrooxidans ATCC 23270 7137255 YP_002427400.1 CDS AFE_3033 NC_011761.1 2723455 2724483 R identified by match to protein family HMM PF01636; phosphotransferase complement(2723455..2724483) Acidithiobacillus ferrooxidans ATCC 23270 7134383 YP_002427401.1 CDS AFE_3034 NC_011761.1 2724591 2726696 D identified by similarity to SP:P31554; match to protein family HMM PF03968; match to protein family HMM PF04453; organic solvent tolerance protein 2724591..2726696 Acidithiobacillus ferrooxidans ATCC 23270 7137200 YP_002427402.1 CDS surA NC_011761.1 2726819 2728129 D identified by similarity to SP:P21202; match to protein family HMM PF00639; match to protein family HMM PF09312; survival protein SurA 2726819..2728129 Acidithiobacillus ferrooxidans ATCC 23270 7136974 YP_002427403.1 CDS AFE_3036 NC_011761.1 2728122 2728928 D identified by match to protein family HMM PF01061; ABC transporter 2728122..2728928 Acidithiobacillus ferrooxidans ATCC 23270 7135742 YP_002427404.1 CDS AFE_3037 NC_011761.1 2728939 2729271 D identified by match to protein family HMM PF01722; BolA family protein 2728939..2729271 Acidithiobacillus ferrooxidans ATCC 23270 7135028 YP_002427405.1 CDS AFE_3038 NC_011761.1 2729303 2729635 D identified by match to protein family HMM PF00462; match to protein family HMM TIGR00365; glutaredoxin-like protein 2729303..2729635 Acidithiobacillus ferrooxidans ATCC 23270 7134126 YP_002427406.1 CDS murA NC_011761.1 2729645 2730916 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2729645..2730916 Acidithiobacillus ferrooxidans ATCC 23270 7135105 YP_002427407.1 CDS hisG NC_011761.1 2730913 2731560 D identified by similarity to SP:O34520; match to protein family HMM PF01634; match to protein family HMM TIGR00070; ATP phosphoribosyltransferase 2730913..2731560 Acidithiobacillus ferrooxidans ATCC 23270 7135115 YP_002427408.1 CDS hisD NC_011761.1 2731557 2732858 D identified by similarity to SP:O34651; match to protein family HMM PF00815; match to protein family HMM TIGR00069; histidinol dehydrogenase 2731557..2732858 Acidithiobacillus ferrooxidans ATCC 23270 7137196 YP_002427409.1 CDS hisC-1 NC_011761.1 2732855 2733934 D identified by match to protein family HMM PF00155; match to protein family HMM TIGR01141; histidinol-phosphate aminotransferase 2732855..2733934 Acidithiobacillus ferrooxidans ATCC 23270 7134302 YP_002427410.1 CDS hisB NC_011761.1 2733931 2734530 D identified by match to protein family HMM PF00475; imidazoleglycerol-phosphate dehydratase 2733931..2734530 Acidithiobacillus ferrooxidans ATCC 23270 7136668 YP_002427411.1 CDS hisH NC_011761.1 2734527 2735198 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 2734527..2735198 Acidithiobacillus ferrooxidans ATCC 23270 7137135 YP_002427412.1 CDS hisA NC_011761.1 2735238 2735966 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 2735238..2735966 Acidithiobacillus ferrooxidans ATCC 23270 7136915 YP_002427413.1 CDS hisF NC_011761.1 2735971 2736732 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 2735971..2736732 Acidithiobacillus ferrooxidans ATCC 23270 7135873 YP_002427414.1 CDS hisIE NC_011761.1 2736819 2737511 D identified by similarity to SP:O34912; match to protein family HMM PF01502; match to protein family HMM PF01503; match to protein family HMM TIGR03188; match to protein family HMM TIGR03456; phosphoribosyl-AMP pyrophosphatase/phosphoribosyl-ATP cyclohydrolase 2736819..2737511 Acidithiobacillus ferrooxidans ATCC 23270 7136925 YP_002427415.1 CDS tatA NC_011761.1 2737591 2737809 D identified by similarity to GB:CAC29147.1; match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin-arginine translocation protein, TatA/E family 2737591..2737809 Acidithiobacillus ferrooxidans ATCC 23270 7136475 YP_002427416.1 CDS tatB NC_011761.1 2737816 2738184 D identified by similarity to GB:CAC29148.1; match to protein family HMM PF02416; match to protein family HMM TIGR01410; twin-arginine translocation protein TatB 2737816..2738184 Acidithiobacillus ferrooxidans ATCC 23270 7134738 YP_002427417.1 CDS tatC NC_011761.1 2738323 2739129 D identified by match to protein family HMM PF00902; match to protein family HMM TIGR00945; Sec-independent protein translocase TatC 2738323..2739129 Acidithiobacillus ferrooxidans ATCC 23270 7135417 YP_002427418.1 CDS rbcL NC_011761.1 2739425 2740846 D type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase 2739425..2740846 Acidithiobacillus ferrooxidans ATCC 23270 7134415 YP_002427419.1 CDS cbbS-1 NC_011761.1 2740877 2741233 D identified by match to protein family HMM PF00101; ribulose bisphosphate carboxylase, small subunit 2740877..2741233 Acidithiobacillus ferrooxidans ATCC 23270 7136433 YP_002427420.1 CDS cbbQ-1 NC_011761.1 2741389 2742192 D identified by similarity to GB:BAA76361.1; match to protein family HMM PF07728; match to protein family HMM PF08406; CbbQ protein 2741389..2742192 Acidithiobacillus ferrooxidans ATCC 23270 7134838 YP_002427421.1 CDS AFE_3054 NC_011761.1 2742244 2744562 D identified by match to protein family HMM PF00092; von Willebrand factor type A domain-containing protein 2742244..2744562 Acidithiobacillus ferrooxidans ATCC 23270 7135973 YP_002427422.1 CDS AFE_3055 NC_011761.1 2744652 2744819 R identified by glimmer; putative; hypothetical protein complement(2744652..2744819) Acidithiobacillus ferrooxidans ATCC 23270 7134029 YP_002427423.1 CDS AFE_3056 NC_011761.1 2744758 2744961 D identified by glimmer; putative; hypothetical protein 2744758..2744961 Acidithiobacillus ferrooxidans ATCC 23270 7135733 YP_002427424.1 CDS AFE_3057 NC_011761.1 2744939 2747464 D identified by match to protein family HMM PF00563; match to protein family HMM PF00990; match to protein family HMM PF01590; match to protein family HMM PF08447; match to protein family HMM TIGR00229; match to protein family HMM TIGR00254; sensory box-containing diguanylate cyclase 2744939..2747464 Acidithiobacillus ferrooxidans ATCC 23270 7136152 YP_002427425.1 CDS pyrC-1 NC_011761.1 2747587 2748861 R identified by similarity to SP:Q59712; match to protein family HMM PF01979; match to protein family HMM TIGR00857; dihydroorotase complement(2747587..2748861) Acidithiobacillus ferrooxidans ATCC 23270 7136949 YP_002427426.1 CDS pyrB NC_011761.1 2748867 2749850 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(2748867..2749850) Acidithiobacillus ferrooxidans ATCC 23270 7137285 YP_002427427.1 CDS pyrR NC_011761.1 2749847 2750353 R identified by similarity to SP:P39765; match to protein family HMM PF00156; bifunctional pyrimidine operon regulatory protein/uracil phosphoribosyltransferase complement(2749847..2750353) Acidithiobacillus ferrooxidans ATCC 23270 7135645 YP_002427428.1 CDS AFE_3061 NC_011761.1 2750350 2750781 R identified by match to protein family HMM PF03652; match to protein family HMM TIGR00250; hypothetical protein complement(2750350..2750781) Acidithiobacillus ferrooxidans ATCC 23270 7134426 YP_002427429.1 CDS AFE_3062 NC_011761.1 2750774 2751331 R identified by similarity to GB:BAC60875.1; match to protein family HMM PF02622; hypothetical protein complement(2750774..2751331) Acidithiobacillus ferrooxidans ATCC 23270 7134274 YP_002427430.1 CDS gshB NC_011761.1 2751401 2752339 R identified by similarity to SP:P04425; match to protein family HMM PF02951; match to protein family HMM PF02955; match to protein family HMM PF08443; match to protein family HMM TIGR01380; glutathione synthetase complement(2751401..2752339) Acidithiobacillus ferrooxidans ATCC 23270 7134168 YP_002427431.1 CDS gshA NC_011761.1 2752336 2753646 R identified by match to protein family HMM PF08886; match to protein family HMM TIGR02049; glutamate--cysteine ligase complement(2752336..2753646) Acidithiobacillus ferrooxidans ATCC 23270 7136164 YP_002427432.1 CDS citZ NC_011761.1 2753656 2754816 R catalyzes the formation of citrate from acetyl-CoA and oxaloacetate; citrate synthase complement(2753656..2754816) Acidithiobacillus ferrooxidans ATCC 23270 7136962 YP_002427433.1 CDS AFE_3066 NC_011761.1 2754828 2755001 R identified by glimmer; putative; hypothetical protein complement(2754828..2755001) Acidithiobacillus ferrooxidans ATCC 23270 7135513 YP_002427434.1 CDS AFE_3067 NC_011761.1 2755009 2755383 R identified by match to protein family HMM PF01521; match to protein family HMM TIGR00049; iron-sulfur cluster assembly accessory protein complement(2755009..2755383) Acidithiobacillus ferrooxidans ATCC 23270 7134291 YP_002427435.1 CDS pdhC NC_011761.1 2755513 2758464 R dihydrolipoamide acetyltransferase/dihydrolipoamide dehydrogenase; identified by similarity to PIR:C59237; match to protein family HMM PF00070; match to protein family HMM PF00198; match to protein family HMM PF00364; match to protein family HMM PF02817; match to protein family HMM PF02852; match to protein family HMM PF07992; pyruvate dehydrogenase complex, E2 and E3 components complement(2755513..2758464) Acidithiobacillus ferrooxidans ATCC 23270 7136320 YP_002427436.1 CDS pdhB NC_011761.1 2758520 2759500 R identified by similarity to PIR:B59237; match to protein family HMM PF02779; match to protein family HMM PF02780; pyruvate dehydrogenase E1 component subunit beta complement(2758520..2759500) Acidithiobacillus ferrooxidans ATCC 23270 7136572 YP_002427437.1 CDS pdhA NC_011761.1 2759493 2760476 R identified by similarity to PIR:A59237; match to protein family HMM PF00676; match to protein family HMM TIGR03182; pyruvate dehydrogenase E1 component subunit alpha complement(2759493..2760476) Acidithiobacillus ferrooxidans ATCC 23270 7135766 YP_002427438.1 CDS AFE_3071 NC_011761.1 2760865 2761143 R identified by glimmer; putative; hypothetical protein complement(2760865..2761143) Acidithiobacillus ferrooxidans ATCC 23270 7135059 YP_002427439.1 CDS AFE_3072 NC_011761.1 2761213 2761557 R identified by glimmer; putative; hypothetical protein complement(2761213..2761557) Acidithiobacillus ferrooxidans ATCC 23270 7136444 YP_002427440.1 CDS argC NC_011761.1 2761822 2762856 R identified by similarity to SP:P23715; match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01850; N-acetyl-gamma-glutamyl-phosphate reductase complement(2761822..2762856) Acidithiobacillus ferrooxidans ATCC 23270 7137234 YP_002427441.1 CDS rpsI NC_011761.1 2762940 2763326 R identified by similarity to SP:P02363; match to protein family HMM PF00380; 30S ribosomal protein S9 complement(2762940..2763326) Acidithiobacillus ferrooxidans ATCC 23270 7134975 YP_002427442.1 CDS rplM NC_011761.1 2763339 2763767 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(2763339..2763767) Acidithiobacillus ferrooxidans ATCC 23270 7137069 YP_002427443.1 CDS AFE_3076 NC_011761.1 2763828 2764322 D identified by glimmer; putative; hypothetical protein 2763828..2764322 Acidithiobacillus ferrooxidans ATCC 23270 7137183 YP_002427444.1 CDS AFE_3077 NC_011761.1 2764617 2764901 R identified by glimmer; putative; hypothetical protein complement(2764617..2764901) Acidithiobacillus ferrooxidans ATCC 23270 7135985 YP_002427445.1 CDS AFE_3078 NC_011761.1 2765188 2765400 R identified by similarity to GB:CAD15208.1; hypothetical protein complement(2765188..2765400) Acidithiobacillus ferrooxidans ATCC 23270 7134363 YP_002427446.1 CDS AFE_3079 NC_011761.1 2765486 2766085 R identified by match to protein family HMM PF00881; nitroreductase family protein complement(2765486..2766085) Acidithiobacillus ferrooxidans ATCC 23270 7136745 YP_002427447.1 CDS tyrS NC_011761.1 2771581 2772804 R identified by similarity to SP:P41256; match to protein family HMM PF00579; match to protein family HMM PF01479; match to protein family HMM TIGR00234; tyrosyl-tRNA synthetase complement(2771581..2772804) Acidithiobacillus ferrooxidans ATCC 23270 7134947 YP_002427448.1 CDS AFE_3086 NC_011761.1 2772904 2775195 R identified by match to protein family HMM PF00122; match to protein family HMM PF00690; match to protein family HMM PF00702; match to protein family HMM TIGR01494; plasma-membrane proton-efflux P-type ATPase complement(2772904..2775195) Acidithiobacillus ferrooxidans ATCC 23270 7136157 YP_002427449.1 CDS AFE_3087 NC_011761.1 2775176 2775313 R identified by glimmer; putative; hypothetical protein complement(2775176..2775313) Acidithiobacillus ferrooxidans ATCC 23270 7136412 YP_002427450.1 CDS AFE_3088 NC_011761.1 2775299 2775439 D identified by glimmer; putative; hypothetical protein 2775299..2775439 Acidithiobacillus ferrooxidans ATCC 23270 7136417 YP_002427451.1 CDS panD NC_011761.1 2775436 2775819 D identified by similarity to SP:P31664; match to protein family HMM PF01476; match to protein family HMM PF02261; match to protein family HMM TIGR00223; aspartate 1-decarboxylase 2775436..2775819 Acidithiobacillus ferrooxidans ATCC 23270 7134193 YP_002427452.1 CDS AFE_3090 NC_011761.1 2775868 2777061 D identified by match to protein family HMM PF07690; hypothetical protein 2775868..2777061 Acidithiobacillus ferrooxidans ATCC 23270 7135211 YP_002427453.1 CDS AFE_3091 NC_011761.1 2777065 2777160 D identified by glimmer; putative; hypothetical protein 2777065..2777160 Acidithiobacillus ferrooxidans ATCC 23270 7135207 YP_002427454.1 CDS engB NC_011761.1 2777220 2777906 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 2777220..2777906 Acidithiobacillus ferrooxidans ATCC 23270 7136217 YP_002427455.1 CDS AFE_3093 NC_011761.1 2777972 2779234 D identified by similarity to SP:P31069; match to protein family HMM PF00520; match to protein family HMM PF02254; match to protein family HMM PF07885; voltage-gated potassium channel 2777972..2779234 Acidithiobacillus ferrooxidans ATCC 23270 7135574 YP_002427456.1 CDS polI NC_011761.1 2779237 2781936 R identified by similarity to SP:P00582; match to protein family HMM PF00476; match to protein family HMM PF01367; match to protein family HMM PF01612; match to protein family HMM PF02739; match to protein family HMM TIGR00593; DNA polymerase I complement(2779237..2781936) Acidithiobacillus ferrooxidans ATCC 23270 7135278 YP_002427457.1 CDS AFE_3095 NC_011761.1 2781988 2782725 D identified by similarity to GB:CAD85380.1; match to protein family HMM PF03641; match to protein family HMM TIGR00730; hypothetical protein 2781988..2782725 Acidithiobacillus ferrooxidans ATCC 23270 7137169 YP_002427458.1 CDS AFE_3096 NC_011761.1 2782746 2783081 D identified by similarity to GB:AAQ58453.1; hypothetical protein 2782746..2783081 Acidithiobacillus ferrooxidans ATCC 23270 7136403 YP_002427459.1 CDS thrB NC_011761.1 2783124 2784056 D identified by match to protein family HMM PF01636; match to protein family HMM TIGR00938; homoserine kinase 2783124..2784056 Acidithiobacillus ferrooxidans ATCC 23270 7135314 YP_002427460.1 CDS AFE_3098 NC_011761.1 2784095 2784418 R identified by glimmer; putative; hypothetical protein complement(2784095..2784418) Acidithiobacillus ferrooxidans ATCC 23270 7134754 YP_002427461.1 CDS AFE_3099 NC_011761.1 2784621 2785223 D identified by glimmer; putative; hypothetical protein 2784621..2785223 Acidithiobacillus ferrooxidans ATCC 23270 7136588 YP_002427462.1 CDS AFE_3100 NC_011761.1 2785234 2785641 R identified by similarity to GB:CAB44964.1; match to protein family HMM PF00633; match to protein family HMM TIGR00426; competence protein ComEA complement(2785234..2785641) Acidithiobacillus ferrooxidans ATCC 23270 7134680 YP_002427463.1 CDS uvrD NC_011761.1 2785660 2787789 R identified by match to protein family HMM PF00580; DNA helicase II complement(2785660..2787789) Acidithiobacillus ferrooxidans ATCC 23270 7135030 YP_002427464.1 CDS cbpA NC_011761.1 2787906 2788838 D identified by similarity to SP:P36659; match to protein family HMM PF00226; match to protein family HMM PF01556; curved DNA-binding protein 2787906..2788838 Acidithiobacillus ferrooxidans ATCC 23270 7134576 YP_002427465.1 CDS AFE_3103 NC_011761.1 2789156 2789824 D identified by similarity to GB:AAM31476.1; match to protein family HMM PF00156; phosphoribosyl transferase domain-containing protein 2789156..2789824 Acidithiobacillus ferrooxidans ATCC 23270 7135171 YP_002427466.1 CDS AFE_3104 NC_011761.1 2789828 2791558 D identified by match to protein family HMM PF00633; match to protein family HMM PF02811; DNA polymerase X family protein 2789828..2791558 Acidithiobacillus ferrooxidans ATCC 23270 7135897 YP_002427467.1 CDS AFE_3105 NC_011761.1 2791647 2791952 R identified by similarity to GB:AAK61303.1; ISAfe6, transposase, degenerate complement(2791647..2791952) Acidithiobacillus ferrooxidans ATCC 23270 7136577 YP_002427468.1 CDS AFE_3106 NC_011761.1 2792135 2792245 R identified by glimmer; putative; hypothetical protein complement(2792135..2792245) Acidithiobacillus ferrooxidans ATCC 23270 7135637 YP_002427469.1 CDS cycA-1 NC_011761.1 2792679 2793383 D identified by match to protein family HMM PF00034; cytochrome c4 2792679..2793383 Acidithiobacillus ferrooxidans ATCC 23270 7135444 YP_002427470.1 CDS sdr_1 NC_011761.1 2793376 2794167 D identified by match to protein family HMM PF00106; match to protein family HMM PF08659; short-chain dehydrogenase 2793376..2794167 Acidithiobacillus ferrooxidans ATCC 23270 7134987 YP_002427471.1 CDS petA-1 NC_011761.1 2794266 2794886 D identified by match to protein family HMM PF00355; match to protein family HMM TIGR01409; match to protein family HMM TIGR01416; ubiquinol--cytochrome c reductase, iron-sulfur subunit 2794266..2794886 Acidithiobacillus ferrooxidans ATCC 23270 7136206 YP_002427472.1 CDS petB-1 NC_011761.1 2794914 2796122 D identified by similarity to SP:P23134; match to protein family HMM PF00032; match to protein family HMM PF00033; ubiquinol--cytochrome c reductase, cytochrome b subunit 2794914..2796122 Acidithiobacillus ferrooxidans ATCC 23270 7134470 YP_002427473.1 CDS petC-1 NC_011761.1 2796119 2796847 D identified by match to protein family HMM PF02167; ubiquinol--cytochrome c reductase, cytochrome c1 subunit 2796119..2796847 Acidithiobacillus ferrooxidans ATCC 23270 7136609 YP_002427474.1 CDS resB NC_011761.1 2797400 2799244 D identified by match to protein family HMM PF05140; cytochrome c-type biogenesis protein ResB 2797400..2799244 Acidithiobacillus ferrooxidans ATCC 23270 7135722 YP_002427475.1 CDS resC NC_011761.1 2799366 2800424 D identified by match to protein family HMM PF01578; match to protein family HMM TIGR03144; cytochrome c-type biogenesis protein ResC 2799366..2800424 Acidithiobacillus ferrooxidans ATCC 23270 7137186 YP_002427476.1 CDS AFE_3114 NC_011761.1 2800604 2800969 D identified by similarity to PIR:C70335; hypothetical protein 2800604..2800969 Acidithiobacillus ferrooxidans ATCC 23270 7134636 YP_002427477.1 CDS AFE_3115 NC_011761.1 2802475 2802960 R identified by similarity to SP:O67860; hypothetical protein complement(2802475..2802960) Acidithiobacillus ferrooxidans ATCC 23270 7136467 YP_002427478.1 CDS AFE_3116 NC_011761.1 2803535 2803921 D identified by similarity to PIR:C69319; hypothetical protein 2803535..2803921 Acidithiobacillus ferrooxidans ATCC 23270 7135890 YP_002427479.1 CDS AFE_3117 NC_011761.1 2803965 2804195 D identified by similarity to SP:O29695; match to protein family HMM PF01206; hypothetical protein 2803965..2804195 Acidithiobacillus ferrooxidans ATCC 23270 7135290 YP_002427480.1 CDS AFE_3118 NC_011761.1 2804238 2805377 D identified by similarity to SP:Q9R112; match to protein family HMM PF07992; pyridine nucleotide-disulfide oxidoreductase 2804238..2805377 Acidithiobacillus ferrooxidans ATCC 23270 7135397 YP_002427481.1 CDS AFE_3119 NC_011761.1 2806194 2806556 R identified by glimmer; putative; hypothetical protein complement(2806194..2806556) Acidithiobacillus ferrooxidans ATCC 23270 7135481 YP_002427482.1 CDS AFE_3120 NC_011761.1 2806719 2807033 D hypothetical protein 2806719..2807033 Acidithiobacillus ferrooxidans ATCC 23270 7134331 YP_002427483.1 CDS cysJ NC_011761.1 2807385 2809151 D identified by match to protein family HMM PF00175; match to protein family HMM PF00258; match to protein family HMM PF00667; sulfite reductase (NADPH) flavoprotein subunit alpha 2807385..2809151 Acidithiobacillus ferrooxidans ATCC 23270 7136529 YP_002427484.1 CDS cysI NC_011761.1 2809141 2810832 D identified by match to protein family HMM PF01077; match to protein family HMM PF03460; sulfite reductase (NADPH) hemoprotein subunit beta 2809141..2810832 Acidithiobacillus ferrooxidans ATCC 23270 7134882 YP_002427485.1 CDS cysH NC_011761.1 2810840 2811577 D identified by match to protein family HMM PF01507; match to protein family HMM TIGR00434; match to protein family HMM TIGR02055; adenylylsulfate reductase 2810840..2811577 Acidithiobacillus ferrooxidans ATCC 23270 7136409 YP_002427486.1 CDS cysD-2 NC_011761.1 2811574 2812512 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 2811574..2812512 Acidithiobacillus ferrooxidans ATCC 23270 7136793 YP_002427487.1 CDS cysN NC_011761.1 2812512 2813864 D identified by match to protein family HMM PF00009; match to protein family HMM PF03144; match to protein family HMM TIGR02034; sulfate adenylyltransferase, large subunit 2812512..2813864 Acidithiobacillus ferrooxidans ATCC 23270 7134757 YP_002427488.1 CDS cobA NC_011761.1 2813970 2814791 D identified by similarity to SP:P21631; match to protein family HMM PF00590; match to protein family HMM TIGR01469; uroporphyrin-III C-methyltransferase 2813970..2814791 Acidithiobacillus ferrooxidans ATCC 23270 7134956 YP_002427489.1 CDS AFE_3127 NC_011761.1 2814788 2815141 D identified by similarity to GB:CAD16125.1; match to protein family HMM PF01903; hypothetical protein 2814788..2815141 Acidithiobacillus ferrooxidans ATCC 23270 7137097 YP_002427490.1 CDS AFE_3128 NC_011761.1 2815171 2815677 D identified by glimmer; putative; hypothetical protein 2815171..2815677 Acidithiobacillus ferrooxidans ATCC 23270 7136055 YP_002427491.1 CDS AFE_3129 NC_011761.1 2815696 2817099 R identified by match to protein family HMM PF00654; voltage-gated chloride channel complement(2815696..2817099) Acidithiobacillus ferrooxidans ATCC 23270 7134326 YP_002427492.1 CDS AFE_3130 NC_011761.1 2817239 2817565 D identified by glimmer; putative; hypothetical protein 2817239..2817565 Acidithiobacillus ferrooxidans ATCC 23270 7134176 YP_002427493.1 CDS AFE_3131 NC_011761.1 2817574 2817822 R identified by match to protein family HMM PF02416; match to protein family HMM TIGR01411; twin-arginine translocation protein, TatA/E family complement(2817574..2817822) Acidithiobacillus ferrooxidans ATCC 23270 7134548 YP_002427494.1 CDS AFE_3132 NC_011761.1 2818259 2818486 D identified by glimmer; putative; hypothetical protein 2818259..2818486 Acidithiobacillus ferrooxidans ATCC 23270 7134435 YP_002427495.1 CDS AFE_3133 NC_011761.1 2818547 2819356 R identified by glimmer; putative; hypothetical protein complement(2818547..2819356) Acidithiobacillus ferrooxidans ATCC 23270 7134080 YP_002427496.1 CDS AFE_3134 NC_011761.1 2819723 2819887 D identified by glimmer; putative; hypothetical protein 2819723..2819887 Acidithiobacillus ferrooxidans ATCC 23270 7135227 YP_002427497.1 CDS AFE_3135 NC_011761.1 2820227 2820631 D identified by glimmer; putative; hypothetical protein 2820227..2820631 Acidithiobacillus ferrooxidans ATCC 23270 7135546 YP_002427498.1 CDS AFE_3136 NC_011761.1 2821701 2822954 D identified by match to protein family HMM PF00512; match to protein family HMM PF02518; sensor histidine kinase 2821701..2822954 Acidithiobacillus ferrooxidans ATCC 23270 7135581 YP_002427499.1 CDS AFE_3137 NC_011761.1 2823014 2823529 D identified by match to protein family HMM PF00072; match to protein family HMM PF02954; DNA-binding response regulator 2823014..2823529 Acidithiobacillus ferrooxidans ATCC 23270 7136484 YP_002427500.1 CDS AFE_3138 NC_011761.1 2823588 2824229 R identified by match to protein family HMM PF03171; 2OG-Fe(II) oxygenase complement(2823588..2824229) Acidithiobacillus ferrooxidans ATCC 23270 7134982 YP_002427501.1 CDS AFE_3139 NC_011761.1 2824347 2824874 R identified by glimmer; putative; hypothetical protein complement(2824347..2824874) Acidithiobacillus ferrooxidans ATCC 23270 7136868 YP_002427502.1 CDS AFE_3140 NC_011761.1 2824886 2824978 R identified by glimmer; putative; hypothetical protein complement(2824886..2824978) Acidithiobacillus ferrooxidans ATCC 23270 7135005 YP_002427503.1 CDS AFE_3141 NC_011761.1 2824988 2825428 R identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family protein complement(2824988..2825428) Acidithiobacillus ferrooxidans ATCC 23270 7135468 YP_002427504.1 CDS AFE_3142 NC_011761.1 2825443 2826636 R identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter complement(2825443..2826636) Acidithiobacillus ferrooxidans ATCC 23270 7134443 YP_002427505.1 CDS cyoE-2 NC_011761.1 2826656 2827600 R identified by similarity to SP:P56938; match to protein family HMM PF01040; match to protein family HMM TIGR01473; protoheme IX farnesyltransferase complement(2826656..2827600) Acidithiobacillus ferrooxidans ATCC 23270 7135909 YP_002427506.1 CDS AFE_3144 NC_011761.1 2827616 2828443 R hypothetical protein complement(2827616..2828443) Acidithiobacillus ferrooxidans ATCC 23270 7134444 YP_002427507.1 CDS AFE_3145 NC_011761.1 2828694 2828810 R identified by glimmer; putative; hypothetical protein complement(2828694..2828810) Acidithiobacillus ferrooxidans ATCC 23270 7136077 YP_002427508.1 CDS rus NC_011761.1 2828862 2829425 R identified by similarity to SP:P24930; match to protein family HMM TIGR03095; rusticyanin complement(2828862..2829425) Acidithiobacillus ferrooxidans ATCC 23270 7137052 YP_002427509.1 CDS coxD NC_011761.1 2829793 2829987 R identified by similarity to GB:BAC22706.1; cytochrome c oxidase, aa3-type, subunit IV complement(2829793..2829987) Acidithiobacillus ferrooxidans ATCC 23270 7134941 YP_002427510.1 CDS coxC NC_011761.1 2830028 2830582 R identified by similarity to GB:CAA07036.1; cytochrome c oxidase, aa3-type, subunit III complement(2830028..2830582) Acidithiobacillus ferrooxidans ATCC 23270 7135368 YP_002427511.1 CDS coxA NC_011761.1 2830602 2832485 R identified by similarity to GB:CAA07035.1; match to protein family HMM PF00115; cytochrome c oxidase, aa3-type, subunit I complement(2830602..2832485) Acidithiobacillus ferrooxidans ATCC 23270 7135006 YP_002427512.1 CDS coxB NC_011761.1 2832542 2833306 R identified by similarity to GB:CAA07034.1; match to protein family HMM PF00116; cytochrome c oxidase, aa3-type, subunit II complement(2832542..2833306) Acidithiobacillus ferrooxidans ATCC 23270 7137292 YP_002427513.1 CDS AFE_3151 NC_011761.1 2833321 2833872 R identified by similarity to GB:CAA07033.2; hypothetical protein complement(2833321..2833872) Acidithiobacillus ferrooxidans ATCC 23270 7134049 YP_002427514.1 CDS cyc1 NC_011761.1 2833974 2834666 R identified by similarity to SP:P74917; match to protein family HMM PF00034; cytochrome c552 complement(2833974..2834666) Acidithiobacillus ferrooxidans ATCC 23270 7135079 YP_002427515.1 CDS cyc2 NC_011761.1 2834678 2836135 R identified by similarity to GB:CAA07031.1; cytochrome c complement(2834678..2836135) Acidithiobacillus ferrooxidans ATCC 23270 7136678 YP_002427516.1 CDS AFE_3154 NC_011761.1 2836820 2837512 D identified by match to protein family HMM PF03050; ISAfe4, transposase orf3, degenerate 2836820..2837512 Acidithiobacillus ferrooxidans ATCC 23270 7137068 YP_002427517.1 CDS AFE_3155 NC_011761.1 2837552 2838664 R identified by glimmer; putative; hypothetical protein complement(2837552..2838664) Acidithiobacillus ferrooxidans ATCC 23270 7136094 YP_002427518.1 CDS AFE_3156 NC_011761.1 2839069 2839290 D identified by glimmer; putative; hypothetical protein 2839069..2839290 Acidithiobacillus ferrooxidans ATCC 23270 7136537 YP_002427519.1 CDS AFE_3157 NC_011761.1 2839388 2839681 R identified by similarity to GB:AAK61303.1; ISAfe6, transposase, degenerate complement(2839388..2839681) Acidithiobacillus ferrooxidans ATCC 23270 7136287 YP_002427520.1 CDS htpG NC_011761.1 2839779 2841668 R identified by similarity to SP:P10413; match to protein family HMM PF00183; match to protein family HMM PF02518; heat shock protein HtpG complement(2839779..2841668) Acidithiobacillus ferrooxidans ATCC 23270 7136138 YP_002427521.1 CDS AFE_3160 NC_011761.1 2841714 2841863 D identified by glimmer; putative; hypothetical protein 2841714..2841863 Acidithiobacillus ferrooxidans ATCC 23270 7136923 YP_002427522.1 CDS AFE_3159 NC_011761.1 2841856 2842176 R identified by similarity to PIR:S76457; hypothetical protein complement(2841856..2842176) Acidithiobacillus ferrooxidans ATCC 23270 7137290 YP_002427523.1 CDS AFE_3161 NC_011761.1 2842362 2843357 R identified by match to protein family HMM PF00389; match to protein family HMM PF02826; D-isomer specific 2-hydroxyacid dehydrogenase family protein complement(2842362..2843357) Acidithiobacillus ferrooxidans ATCC 23270 7136874 YP_002427524.1 CDS AFE_3162 NC_011761.1 2844062 2844547 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(2844062..2844547) Acidithiobacillus ferrooxidans ATCC 23270 7135536 YP_002427525.1 CDS AFE_3163 NC_011761.1 2844650 2844970 R catalyzes the second reaction in the pyochelin biosynthetic pathway, the conversion of isochorismate to salicylate and pyruvate.; isochorismate-pyruvate lyase complement(2844650..2844970) Acidithiobacillus ferrooxidans ATCC 23270 7137031 YP_002427526.1 CDS AFE_3164 NC_011761.1 2845001 2845648 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein complement(2845001..2845648) Acidithiobacillus ferrooxidans ATCC 23270 7137053 YP_002427527.1 CDS AFE_3165 NC_011761.1 2845659 2846879 R hypothetical protein complement(2845659..2846879) Acidithiobacillus ferrooxidans ATCC 23270 7135820 YP_002427528.1 CDS AFE_3166 NC_011761.1 2847007 2847468 R identified by match to protein family HMM PF00583; GNAT family acetyltransferase complement(2847007..2847468) Acidithiobacillus ferrooxidans ATCC 23270 7134958 YP_002427529.1 CDS AFE_3168 NC_011761.1 2848227 2848874 R identified by similarity to PIR:B83761; hypothetical protein complement(2848227..2848874) Acidithiobacillus ferrooxidans ATCC 23270 7134713 YP_002427530.1 CDS AFE_3169 NC_011761.1 2848885 2849370 R identified by similarity to GB:CAD16379.1; match to protein family HMM PF07883; hypothetical protein complement(2848885..2849370) Acidithiobacillus ferrooxidans ATCC 23270 7136076 YP_002427531.1 CDS AFE_3170 NC_011761.1 2849372 2849839 R identified by similarity to GB:AAQ59281.1; hypothetical protein complement(2849372..2849839) Acidithiobacillus ferrooxidans ATCC 23270 7137243 YP_002427532.1 CDS AFE_3172 NC_011761.1 2850264 2850662 R identified by match to protein family HMM PF00903; glyoxalase family protein complement(2850264..2850662) Acidithiobacillus ferrooxidans ATCC 23270 7135656 YP_002427533.1 CDS AFE_3173 NC_011761.1 2850902 2851327 R identified by glimmer; putative; hypothetical protein complement(2850902..2851327) Acidithiobacillus ferrooxidans ATCC 23270 7135977 YP_002427534.1 CDS AFE_3174 NC_011761.1 2851317 2851820 R prevent-host-death family protein complement(2851317..2851820) Acidithiobacillus ferrooxidans ATCC 23270 7134262 YP_002427535.1 CDS AFE_3175 NC_011761.1 2853012 2853968 D identified by glimmer; putative; hypothetical protein 2853012..2853968 Acidithiobacillus ferrooxidans ATCC 23270 7135402 YP_002427536.1 CDS AFE_3176 NC_011761.1 2853973 2854800 R identified by match to protein family HMM PF01695; ISAfe9, transposition helper protein complement(2853973..2854800) Acidithiobacillus ferrooxidans ATCC 23270 7135219 YP_002427537.1 CDS AFE_3177 NC_011761.1 2854797 2856281 R identified by match to protein family HMM PF00665; ISAfe9, transposase complement(2854797..2856281) Acidithiobacillus ferrooxidans ATCC 23270 7135799 YP_002427538.1 CDS AFE_3178 NC_011761.1 2856479 2856748 D identified by glimmer; putative; hypothetical protein 2856479..2856748 Acidithiobacillus ferrooxidans ATCC 23270 7136294 YP_002427539.1 CDS AFE_3179 NC_011761.1 2856718 2856891 D identified by glimmer; putative; hypothetical protein 2856718..2856891 Acidithiobacillus ferrooxidans ATCC 23270 7136642 YP_002427540.1 CDS AFE_3180 NC_011761.1 2856858 2857016 D identified by glimmer; putative; hypothetical protein 2856858..2857016 Acidithiobacillus ferrooxidans ATCC 23270 7135159 YP_002427541.1 CDS AFE_3183 NC_011761.1 2858272 2859300 R identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISAfe1, transposase complement(2858272..2859300) Acidithiobacillus ferrooxidans ATCC 23270 7134074 YP_002427542.1 CDS mrr NC_011761.1 2861419 2862336 R identified by similarity to SP:P24202; match to protein family HMM PF04471; Mrr restriction system protein complement(2861419..2862336) Acidithiobacillus ferrooxidans ATCC 23270 7134357 YP_002427543.1 CDS AFE_3187 NC_011761.1 2862792 2863064 D transposase. degenerate 2862792..2863064 Acidithiobacillus ferrooxidans ATCC 23270 7136602 YP_002427544.1 CDS AFE_3188 NC_011761.1 2863235 2863513 D identified by glimmer; putative; hypothetical protein 2863235..2863513 Acidithiobacillus ferrooxidans ATCC 23270 7134739 YP_002427545.1 CDS AFE_3189 NC_011761.1 2864024 2864887 R identified by similarity to GB:CAD18424.1; hypothetical protein complement(2864024..2864887) Acidithiobacillus ferrooxidans ATCC 23270 7135747 YP_002427546.1 CDS AFE_3190 NC_011761.1 2864900 2865031 R identified by glimmer; putative; hypothetical protein complement(2864900..2865031) Acidithiobacillus ferrooxidans ATCC 23270 7136967 YP_002427547.1 CDS AFE_3191 NC_011761.1 2865496 2868222 D identified by match to protein family HMM PF04851; type III restriction-modification system, Res subunit 2865496..2868222 Acidithiobacillus ferrooxidans ATCC 23270 7136786 YP_002427548.1 CDS AFE_3192 NC_011761.1 2868225 2870480 D identified by match to protein family HMM PF01555; type III restriction-modification system, Mod subunit 2868225..2870480 Acidithiobacillus ferrooxidans ATCC 23270 7134735 YP_002427549.1 CDS AFE_3193 NC_011761.1 2870533 2873217 D PHP domain-containing protein 2870533..2873217 Acidithiobacillus ferrooxidans ATCC 23270 7136095 YP_002427550.1 CDS AFE_3194 NC_011761.1 2873220 2874431 D identified by similarity to SP:O50224; match to protein family HMM PF04326; ATP-dependent DNA helicase RecG domain-containing protein 2873220..2874431 Acidithiobacillus ferrooxidans ATCC 23270 7136762 YP_002427551.1 CDS AFE_3195 NC_011761.1 2874471 2876102 R identified by similarity to PIR:T45498; Tn5468, orf5 complement(2874471..2876102) Acidithiobacillus ferrooxidans ATCC 23270 7136773 YP_002427552.1 CDS tnsD-2 NC_011761.1 2876122 2877951 R identified by similarity to PIR:T45497; Tn5468, transposition protein D complement(2876122..2877951) Acidithiobacillus ferrooxidans ATCC 23270 7134239 YP_002427553.1 CDS tnsC-2 NC_011761.1 2877963 2879618 R identified by similarity to PIR:T45496; Tn5468, transposition protein C complement(2877963..2879618) Acidithiobacillus ferrooxidans ATCC 23270 7136713 YP_002427554.1 CDS tnsB-2 NC_011761.1 2879602 2881767 R identified by similarity to PIR:T45495; match to protein family HMM PF00665; Tn5468, transposase B complement(2879602..2881767) Acidithiobacillus ferrooxidans ATCC 23270 7136673 YP_002427555.1 CDS tnsA-2 NC_011761.1 2881764 2882600 R identified by similarity to PIR:T45494; match to protein family HMM PF08721; match to protein family HMM PF08722; Tn5468, transposase A complement(2881764..2882600) Acidithiobacillus ferrooxidans ATCC 23270 7136309 YP_002427556.1 CDS glmS NC_011761.1 2882774 2884609 R identified by match to protein family HMM PF00310; match to protein family HMM PF01380; match to protein family HMM TIGR01135; glucosamine--fructose-6-phosphate aminotransferase complement(2882774..2884609) Acidithiobacillus ferrooxidans ATCC 23270 7134085 YP_002427557.1 CDS glmU NC_011761.1 2884655 2886022 R identified by similarity to SP:P17114; match to protein family HMM PF00132; match to protein family HMM PF00483; match to protein family HMM TIGR01173; UDP-N-acetylglucosamine pyrophosphorylase complement(2884655..2886022) Acidithiobacillus ferrooxidans ATCC 23270 7136821 YP_002427558.1 CDS atpC NC_011761.1 2886151 2886576 R part of catalytic core of ATP synthase; alpha(3)beta(3)gamma(1)delta(1)epsilon(1); involved in producing ATP from ADP in the presence of the proton motive force across the membrane; F0F1 ATP synthase subunit epsilon complement(2886151..2886576) Acidithiobacillus ferrooxidans ATCC 23270 7134305 YP_002427559.1 CDS atpD NC_011761.1 2886580 2887989 R identified by match to protein family HMM PF00006; match to protein family HMM PF00306; match to protein family HMM PF02874; match to protein family HMM TIGR01039; ATP synthase F1 subunit beta complement(2886580..2887989) Acidithiobacillus ferrooxidans ATCC 23270 7134609 YP_002427560.1 CDS atpG NC_011761.1 2888031 2888897 R Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma complement(2888031..2888897) Acidithiobacillus ferrooxidans ATCC 23270 7136244 YP_002427561.1 CDS atpA NC_011761.1 2888907 2890451 R produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha complement(2888907..2890451) Acidithiobacillus ferrooxidans ATCC 23270 7136422 YP_002427562.1 CDS atpH NC_011761.1 2890468 2891007 R identified by match to protein family HMM PF00213; match to protein family HMM TIGR01145; ATP synthase F1 subunit delta complement(2890468..2891007) Acidithiobacillus ferrooxidans ATCC 23270 7135057 YP_002427563.1 CDS atpF NC_011761.1 2891018 2891497 R identified by match to protein family HMM PF00430; match to protein family HMM TIGR01144; ATP synthase F0 subunit B complement(2891018..2891497) Acidithiobacillus ferrooxidans ATCC 23270 7136867 YP_002427564.1 CDS atpE NC_011761.1 2891540 2891794 R identified by match to protein family HMM PF00137; match to protein family HMM TIGR01260; ATP synthase F0 subunit C complement(2891540..2891794) Acidithiobacillus ferrooxidans ATCC 23270 7136733 YP_002427565.1 CDS atpB NC_011761.1 2891836 2892585 R identified by match to protein family HMM PF00119; match to protein family HMM TIGR01131; ATP synthase F0 subunit A complement(2891836..2892585) Acidithiobacillus ferrooxidans ATCC 23270 7137260 YP_002427566.1 CDS AFE_3210 NC_011761.1 2892588 2892959 R identified by similarity to PIR:F82716; hypothetical protein complement(2892588..2892959) Acidithiobacillus ferrooxidans ATCC 23270 7134336 YP_002427567.1 CDS AFE_3211 NC_011761.1 2893014 2893898 R identified by match to protein family HMM PF02195; match to protein family HMM TIGR00180; parB family protein complement(2893014..2893898) Acidithiobacillus ferrooxidans ATCC 23270 7134484 YP_002427568.1 CDS AFE_3212 NC_011761.1 2893895 2894677 R identified by similarity to SP:O05189; match to protein family HMM PF01656; chromosome partitioning protein parA complement(2893895..2894677) Acidithiobacillus ferrooxidans ATCC 23270 7134758 YP_002427569.1 CDS gidB NC_011761.1 2894724 2895389 R identified by match to protein family HMM PF02527; match to protein family HMM TIGR00138; methyltransferase GidB complement(2894724..2895389) Acidithiobacillus ferrooxidans ATCC 23270 7136618 YP_002427570.1 CDS gidA NC_011761.1 2895394 2897268 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(2895394..2897268) Acidithiobacillus ferrooxidans ATCC 23270 7134309 YP_002427571.1 CDS AFE_3215 NC_011761.1 2897287 2897736 R lipoprotein complement(2897287..2897736) Acidithiobacillus ferrooxidans ATCC 23270 7136804 YP_002427572.1 CDS AFE_3216 NC_011761.1 2897724 2898263 R identified by similarity to GB:AAN54046.1; match to protein family HMM PF08241; match to protein family HMM PF08242; hypothetical protein complement(2897724..2898263) Acidithiobacillus ferrooxidans ATCC 23270 7136578 YP_002427573.1 CDS moaB NC_011761.1 2898273 2898815 R identified by similarity to SP:P30746; match to protein family HMM PF00994; match to protein family HMM TIGR00177; match to protein family HMM TIGR02667; molybdenum cofactor biosynthesis protein B complement(2898273..2898815) Acidithiobacillus ferrooxidans ATCC 23270 7135921 YP_002427574.1 CDS AFE_3218 NC_011761.1 2898964 2899899 D identified by match to protein family HMM PF01544; magnesium and cobalt transport protein 2898964..2899899 Acidithiobacillus ferrooxidans ATCC 23270 7136648 YP_002427575.1 CDS AFE_3219 NC_011761.1 2899930 2900871 D identified by match to protein family HMM PF01544; magnesium and cobalt transport protein 2899930..2900871 Acidithiobacillus ferrooxidans ATCC 23270 7135225 YP_002427576.1 CDS AFE_3220 NC_011761.1 2900879 2901778 D identified by glimmer; putative; hypothetical protein 2900879..2901778 Acidithiobacillus ferrooxidans ATCC 23270 7136731 YP_002427577.1 CDS AFE_3221 NC_011761.1 2901797 2902708 D identified by match to protein family HMM PF01544; magnesium and cobalt transport protein 2901797..2902708 Acidithiobacillus ferrooxidans ATCC 23270 7134017 YP_002427578.1 CDS AFE_3222 NC_011761.1 2902789 2903859 R identified by match to protein family HMM PF03747; ADP-ribosylglycohydrolase family protein complement(2902789..2903859) Acidithiobacillus ferrooxidans ATCC 23270 7136729 YP_002427579.1 CDS AFE_3223 NC_011761.1 2904250 2904702 D identified by similarity to SP:P30849; WrbA family protein 2904250..2904702 Acidithiobacillus ferrooxidans ATCC 23270 7134803 YP_002427580.1 CDS AFE_3224 NC_011761.1 2904706 2905578 D identified by similarity to SP:O00625; match to protein family HMM PF02678; match to protein family HMM PF05726; pirin family protein 2904706..2905578 Acidithiobacillus ferrooxidans ATCC 23270 7135472 YP_002427581.1 CDS AFE_3225 NC_011761.1 2905627 2905788 D identified by glimmer; putative; hypothetical protein 2905627..2905788 Acidithiobacillus ferrooxidans ATCC 23270 7134823 YP_002427582.1 CDS AFE_3227 NC_011761.1 2905800 2906462 D identified by glimmer; putative; hypothetical protein 2905800..2906462 Acidithiobacillus ferrooxidans ATCC 23270 7136997 YP_002427583.1 CDS AFE_3228 NC_011761.1 2906887 2907066 R identified by glimmer; putative; hypothetical protein complement(2906887..2907066) Acidithiobacillus ferrooxidans ATCC 23270 7136580 YP_002427584.1 CDS AFE_3229 NC_011761.1 2907212 2909518 D identified by match to protein family HMM PF00593; match to protein family HMM PF07715; TonB-dependent receptor 2907212..2909518 Acidithiobacillus ferrooxidans ATCC 23270 7134307 YP_002427585.1 CDS AFE_3230 NC_011761.1 2909604 2912399 D identified by glimmer; putative; hypothetical protein 2909604..2912399 Acidithiobacillus ferrooxidans ATCC 23270 7135983 YP_002427586.1 CDS AFE_3232 NC_011761.1 2912850 2912948 D identified by glimmer; putative; hypothetical protein 2912850..2912948 Acidithiobacillus ferrooxidans ATCC 23270 7135682 YP_002427587.1 CDS AFE_3234 NC_011761.1 2913326 2913916 R identified by glimmer; putative; hypothetical protein complement(2913326..2913916) Acidithiobacillus ferrooxidans ATCC 23270 7136025 YP_002427588.1 CDS AFE_3235 NC_011761.1 2914011 2914787 R identified by match to protein family HMM PF01061; match to protein family HMM TIGR01291; ABC-2 type transporter permease, NodJ family complement(2914011..2914787) Acidithiobacillus ferrooxidans ATCC 23270 7135380 YP_002427589.1 CDS AFE_3236 NC_011761.1 2914787 2915716 R identified by match to protein family HMM PF00005; ABC transporter ATP-binding protein, NodI family complement(2914787..2915716) Acidithiobacillus ferrooxidans ATCC 23270 7137142 YP_002427590.1 CDS AFE_3237 NC_011761.1 2915697 2916365 R identified by similarity to GB:AAO91263.1; hypothetical protein complement(2915697..2916365) Acidithiobacillus ferrooxidans ATCC 23270 7136914 YP_002427591.1 CDS AFE_3238 NC_011761.1 2916425 2916742 R identified by similarity to SP:P07324; ferredoxin complement(2916425..2916742) Acidithiobacillus ferrooxidans ATCC 23270 7134893 YP_002427592.1 CDS AFE_3239 NC_011761.1 2916815 2917441 D Coq7 family protein 2916815..2917441 Acidithiobacillus ferrooxidans ATCC 23270 7135761 YP_002427593.1 CDS AFE_3240 NC_011761.1 2917446 2917973 R identified by match to protein family HMM PF02082; match to protein family HMM TIGR00738; Rrf2 family protein complement(2917446..2917973) Acidithiobacillus ferrooxidans ATCC 23270 7135258 YP_002427594.1 CDS AFE_3241 NC_011761.1 2917945 2918370 R identified by match to protein family HMM PF02566; OsmC/Ohr family protein complement(2917945..2918370) Acidithiobacillus ferrooxidans ATCC 23270 7135010 YP_002427595.1 CDS trpC NC_011761.1 2918441 2919232 R identified by similarity to SP:P20577; match to protein family HMM PF00218; indole-3-glycerol phosphate synthase complement(2918441..2919232) Acidithiobacillus ferrooxidans ATCC 23270 7135981 YP_002427596.1 CDS trpD NC_011761.1 2919236 2920252 R Catalyzes the conversion of N-(5-phospho-D-ribosyl)-anthranilate and diphosphate to anthranilate and 5-phospho-alpha-D-ribose 1-diphosphate; anthranilate phosphoribosyltransferase complement(2919236..2920252) Acidithiobacillus ferrooxidans ATCC 23270 7135177 YP_002427597.1 CDS pabA NC_011761.1 2920249 2920821 R identified by similarity to PIR:A01122; match to protein family HMM PF00117; match to protein family HMM TIGR00566; para-aminobenzoate synthase glutamine amidotransferase component II complement(2920249..2920821) Acidithiobacillus ferrooxidans ATCC 23270 7136941 YP_002427598.1 CDS trpE NC_011761.1 2920805 2922322 R identified by similarity to PIR:A39128; match to protein family HMM PF00425; match to protein family HMM PF04715; match to protein family HMM TIGR00564; anthranilate synthase component I complement(2920805..2922322) Acidithiobacillus ferrooxidans ATCC 23270 7137017 YP_002427599.1 CDS gph-2 NC_011761.1 2922433 2923116 R identified by match to protein family HMM PF00702; match to protein family HMM TIGR01449; match to protein family HMM TIGR01509; match to protein family HMM TIGR01549; phosphoglycolate phosphatase complement(2922433..2923116) Acidithiobacillus ferrooxidans ATCC 23270 7135886 YP_002427600.1 CDS rpe NC_011761.1 2923120 2923782 R identified by match to protein family HMM PF00834; match to protein family HMM TIGR01163; ribulose-phosphate 3-epimerase complement(2923120..2923782) Acidithiobacillus ferrooxidans ATCC 23270 7134912 YP_002427601.1 CDS fba NC_011761.1 2923847 2924917 R identified by match to protein family HMM PF01116; match to protein family HMM TIGR00167; match to protein family HMM TIGR01521; fructose-bisphosphate aldolase complement(2923847..2924917) Acidithiobacillus ferrooxidans ATCC 23270 7134909 YP_002427602.1 CDS pykA NC_011761.1 2925025 2926464 R identified by similarity to SP:P21599; match to protein family HMM PF00224; match to protein family HMM PF02887; match to protein family HMM TIGR01064; pyruvate kinase II complement(2925025..2926464) Acidithiobacillus ferrooxidans ATCC 23270 7134670 YP_002427603.1 CDS pgk NC_011761.1 2926461 2927666 R identified by similarity to SP:P11665; match to protein family HMM PF00162; phosphoglycerate kinase complement(2926461..2927666) Acidithiobacillus ferrooxidans ATCC 23270 7136038 YP_002427604.1 CDS gap NC_011761.1 2927681 2928697 R identified by match to protein family HMM PF00044; match to protein family HMM PF02800; match to protein family HMM TIGR01534; glyceraldehyde-3-phosphate dehydrogenase, type I complement(2927681..2928697) Acidithiobacillus ferrooxidans ATCC 23270 7135346 YP_002427605.1 CDS tkt-2 NC_011761.1 2928732 2930723 R identified by match to protein family HMM PF00456; match to protein family HMM PF02779; match to protein family HMM PF02780; match to protein family HMM TIGR00232; transketolase complement(2928732..2930723) Acidithiobacillus ferrooxidans ATCC 23270 7134127 YP_002427606.1 CDS glpX NC_011761.1 2930755 2931699 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(2930755..2931699) Acidithiobacillus ferrooxidans ATCC 23270 7137300 YP_002427607.1 CDS AFE_3254 NC_011761.1 2931758 2932585 R identified by match to protein family HMM PF00459; inositol monophosphatase family protein complement(2931758..2932585) Acidithiobacillus ferrooxidans ATCC 23270 7135779 YP_002427608.1 CDS AFE_3255 NC_011761.1 2932609 2933046 R identified by similarity to GB:CAD85827.1; hypothetical protein complement(2932609..2933046) Acidithiobacillus ferrooxidans ATCC 23270 7136195 YP_002427609.1 CDS AFE_3256 NC_011761.1 2932970 2933128 R identified by glimmer; putative; hypothetical protein complement(2932970..2933128) Acidithiobacillus ferrooxidans ATCC 23270 7135248 YP_002427610.1 CDS AFE_3257 NC_011761.1 2933114 2933839 D identified by similarity to GB:AAM42157.1; match to protein family HMM PF04452; match to protein family HMM TIGR00046; hypothetical protein 2933114..2933839 Acidithiobacillus ferrooxidans ATCC 23270 7135085 YP_002427611.1 CDS ispH NC_011761.1 2933928 2934878 D identified by match to protein family HMM PF02401; match to protein family HMM TIGR00216; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 2933928..2934878 Acidithiobacillus ferrooxidans ATCC 23270 7137070 YP_002427612.1 CDS AFE_3259 NC_011761.1 2934917 2936377 R identified by similarity to SP:P27850; match to protein family HMM PF02646; DNA recombination protein RmuC complement(2934917..2936377) Acidithiobacillus ferrooxidans ATCC 23270 7134299 YP_002427613.1 CDS mscL NC_011761.1 2936484 2936939 R identified by match to protein family HMM PF01741; match to protein family HMM TIGR00220; large conductance mechanosensitive channel protein complement(2936484..2936939) Acidithiobacillus ferrooxidans ATCC 23270 7136564 YP_002427614.1 CDS AFE_3261 NC_011761.1 2937050 2937562 R lipoprotein complement(2937050..2937562) Acidithiobacillus ferrooxidans ATCC 23270 7137184 YP_002427615.1 CDS AFE_3262 NC_011761.1 2937596 2940706 R identified by match to protein family HMM PF00873; transporter AcrB/AcrD/AcrF family complement(2937596..2940706) Acidithiobacillus ferrooxidans ATCC 23270 7135325 YP_002427616.1 CDS AFE_3263 NC_011761.1 2941025 2942251 D identified by match to protein family HMM PF01548; match to protein family HMM PF02371; ISAfe3, transposase 2941025..2942251 Acidithiobacillus ferrooxidans ATCC 23270 7134467 YP_002427617.1 CDS AFE_3264 NC_011761.1 2942256 2943389 R identified by match to protein family HMM PF00529; match to protein family HMM TIGR01730; RND family efflux transporter MFP subunit complement(2942256..2943389) Acidithiobacillus ferrooxidans ATCC 23270 7136278 YP_002427618.1 CDS AFE_3265 NC_011761.1 2943386 2944816 R identified by match to protein family HMM PF02321; outer membrane efflux protein complement(2943386..2944816) Acidithiobacillus ferrooxidans ATCC 23270 7135978 YP_002427619.1 CDS AFE_3266 NC_011761.1 2945212 2945352 R hypothetical protein complement(2945212..2945352) Acidithiobacillus ferrooxidans ATCC 23270 7135492 YP_002427620.1 CDS AFE_3267 NC_011761.1 2945466 2945909 R identified by match to protein family HMM PF02639; YaiI/YqxD family protein complement(2945466..2945909) Acidithiobacillus ferrooxidans ATCC 23270 7134799 YP_002427621.1 CDS AFE_3268 NC_011761.1 2946113 2946406 D identified by match to protein family HMM TIGR01552; prevent-host-death family protein 2946113..2946406 Acidithiobacillus ferrooxidans ATCC 23270 7135532 YP_002427622.1 CDS AFE_3269 NC_011761.1 2946422 2946844 D identified by similarity to GB:CAD85533.1; match to protein family HMM TIGR00305; hypothetical protein 2946422..2946844 Acidithiobacillus ferrooxidans ATCC 23270 7134684 YP_002427623.1 CDS AFE_3270 NC_011761.1 2947117 2948676 D hypothetical protein 2947117..2948676 Acidithiobacillus ferrooxidans ATCC 23270 7136170 YP_002427624.1 CDS AFE_3271 NC_011761.1 2949653 2949847 R identified by glimmer; putative; hypothetical protein complement(2949653..2949847) Acidithiobacillus ferrooxidans ATCC 23270 7136979 YP_002427625.1 CDS AFE_3272 NC_011761.1 2950598 2950876 R identified by glimmer; putative; hypothetical protein complement(2950598..2950876) Acidithiobacillus ferrooxidans ATCC 23270 7136192 YP_002427626.1 CDS AFE_3273 NC_011761.1 2950860 2951315 D identified by glimmer; putative; hypothetical protein 2950860..2951315 Acidithiobacillus ferrooxidans ATCC 23270 7136978 YP_002427627.1 CDS AFE_3274 NC_011761.1 2951316 2952053 D identified by similarity to SP:P03025; match to protein family HMM PF00072; match to protein family HMM PF00486; transcriptional regulator OmpR 2951316..2952053 Acidithiobacillus ferrooxidans ATCC 23270 7136125 YP_002427628.1 CDS AFE_3275 NC_011761.1 2952059 2953321 D identified by similarity to SP:P02933; match to protein family HMM PF00512; match to protein family HMM PF00672; match to protein family HMM PF02518; osmolarity sensor protein EnvZ 2952059..2953321 Acidithiobacillus ferrooxidans ATCC 23270 7135337 YP_002427629.1 CDS AFE_3276 NC_011761.1 2953333 2953659 R identified by glimmer; putative; hypothetical protein complement(2953333..2953659) Acidithiobacillus ferrooxidans ATCC 23270 7136591 YP_002427630.1 CDS argH NC_011761.1 2953803 2955191 D identified by similarity to SP:O34858; match to protein family HMM PF00206; match to protein family HMM TIGR00838; argininosuccinate lyase 2953803..2955191 Acidithiobacillus ferrooxidans ATCC 23270 7137127 YP_002427631.1 CDS AFE_3278 NC_011761.1 2955188 2955373 D lipoprotein 2955188..2955373 Acidithiobacillus ferrooxidans ATCC 23270 7137083 YP_002427632.1 CDS lysA NC_011761.1 2955370 2956629 D identified by match to protein family HMM PF00278; match to protein family HMM PF02784; match to protein family HMM TIGR01048; diaminopimelate decarboxylase 2955370..2956629 Acidithiobacillus ferrooxidans ATCC 23270 7134875 YP_002427633.1 CDS AFE_3280 NC_011761.1 2956771 2957322 D identified by similarity to GB:AAN68689.1; hypothetical protein 2956771..2957322 Acidithiobacillus ferrooxidans ATCC 23270 7136590 YP_002427634.1 CDS hynD NC_011761.1 2957354 2957830 D identified by match to protein family HMM PF01750; match to protein family HMM TIGR00072; hydrogenase maturation protease 2957354..2957830 Acidithiobacillus ferrooxidans ATCC 23270 7134683 YP_002427635.1 CDS hynH NC_011761.1 2957823 2958233 D hydrogenase expression protein 2957823..2958233 Acidithiobacillus ferrooxidans ATCC 23270 7136184 YP_002427636.1 CDS hynS NC_011761.1 2958233 2959333 D identified by match to protein family HMM PF01058; match to protein family HMM PF08425; match to protein family HMM TIGR00391; match to protein family HMM TIGR01409; [Ni/Fe] hydrogenase, small subunit 2958233..2959333 Acidithiobacillus ferrooxidans ATCC 23270 7136332 YP_002427637.1 CDS isp1 NC_011761.1 2959323 2959988 D hypothetical protein 2959323..2959988 Acidithiobacillus ferrooxidans ATCC 23270 7135608 YP_002427638.1 CDS isp2 NC_011761.1 2959985 2961346 D identified by match to protein family HMM PF00037; match to protein family HMM PF02754; iron-sulfur cluster-binding protein 2959985..2961346 Acidithiobacillus ferrooxidans ATCC 23270 7134460 YP_002427639.1 CDS hynL NC_011761.1 2961350 2963107 D identified by similarity to GB:AAC38282.1; match to protein family HMM PF00374; [Ni/Fe] hydrogenase, large subunit 2961350..2963107 Acidithiobacillus ferrooxidans ATCC 23270 7136378 YP_002427640.1 CDS hypA-2 NC_011761.1 2963176 2963517 D identified by similarity to SP:P24189; match to protein family HMM PF01155; match to protein family HMM TIGR00100; hydrogenase nickel incorporation protein HypA 2963176..2963517 Acidithiobacillus ferrooxidans ATCC 23270 7136048 YP_002427641.1 CDS hypB-2 NC_011761.1 2963517 2964317 D identified by similarity to SP:Q43949; match to protein family HMM PF02492; match to protein family HMM TIGR00073; hydrogenase nickel incorporation protein HypB 2963517..2964317 Acidithiobacillus ferrooxidans ATCC 23270 7135790 YP_002427642.1 CDS hypC-2 NC_011761.1 2964332 2964577 D identified by similarity to SP:P31881; match to protein family HMM PF01455; match to protein family HMM TIGR00074; hydrogenase assembly chaperone HypC 2964332..2964577 Acidithiobacillus ferrooxidans ATCC 23270 7136246 YP_002427643.1 CDS hypD-2 NC_011761.1 2964574 2965686 D identified by similarity to SP:P24192; match to protein family HMM PF01924; match to protein family HMM TIGR00075; hydrogenase expression/formation protein HypD 2964574..2965686 Acidithiobacillus ferrooxidans ATCC 23270 7137024 YP_002427644.1 CDS AFE_3291 NC_011761.1 2965876 2966760 D identified by match to protein family HMM PF01073; match to protein family HMM PF01370; match to protein family HMM PF02719; match to protein family HMM PF04321; match to protein family HMM PF07993; NAD-dependent epimerase/dehydratase family protein 2965876..2966760 Acidithiobacillus ferrooxidans ATCC 23270 7135334 YP_002427645.1 CDS gmd-2 NC_011761.1 2966757 2967788 D identified by similarity to SP:Q51366; match to protein family HMM PF01370; match to protein family HMM TIGR01472; GDP-mannose 4,6-dehydratase 2966757..2967788 Acidithiobacillus ferrooxidans ATCC 23270 7135743 YP_002427646.1 CDS AFE_3293 NC_011761.1 2967785 2969224 D identified by similarity to SP:P29956; match to protein family HMM PF00483; match to protein family HMM PF01050; match to protein family HMM PF07883; match to protein family HMM TIGR01479; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 2967785..2969224 Acidithiobacillus ferrooxidans ATCC 23270 7135917 YP_002427647.1 CDS rfbC NC_011761.1 2969256 2969804 R identified by similarity to SP:P37780; match to protein family HMM PF00908; match to protein family HMM TIGR01221; dTDP-4-dehydrorhamnose 3,5-epimerase complement(2969256..2969804) Acidithiobacillus ferrooxidans ATCC 23270 7136277 YP_002427648.1 CDS rfbA NC_011761.1 2969801 2970685 R identified by similarity to SP:P55254; match to protein family HMM PF00483; match to protein family HMM TIGR01207; glucose-1-phosphate thymidylyltransferase complement(2969801..2970685) Acidithiobacillus ferrooxidans ATCC 23270 7136612 YP_002427649.1 CDS AFE_3296 NC_011761.1 2970883 2972259 D identified by match to protein family HMM PF00083; match to protein family HMM PF07690; major facilitator family transporter 2970883..2972259 Acidithiobacillus ferrooxidans ATCC 23270 7137057 YP_002427650.1 CDS AFE_3297 NC_011761.1 2972273 2972965 R identified by match to protein family HMM TIGR01352; TonB family protein complement(2972273..2972965) Acidithiobacillus ferrooxidans ATCC 23270 7135231 YP_002427651.1 CDS hemB NC_011761.1 2972934 2973926 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(2972934..2973926) Acidithiobacillus ferrooxidans ATCC 23270 7134810 YP_002427652.1 CDS hemD NC_011761.1 2973994 2974782 R identified by similarity to SP:P42452; match to protein family HMM PF02602; uroporphyrinogen-III synthase complement(2973994..2974782) Acidithiobacillus ferrooxidans ATCC 23270 7135671 YP_002427653.1 CDS hemC NC_011761.1 2974779 2975699 R transformation of porphobilinogen to hydroxymethylbilane in porphyrin biosynthesis; porphobilinogen deaminase complement(2974779..2975699) Acidithiobacillus ferrooxidans ATCC 23270 7134520 YP_002427654.1 CDS AFE_3301 NC_011761.1 2975745 2976020 R identified by match to protein family HMM PF00633; competence protein ComEA complement(2975745..2976020) Acidithiobacillus ferrooxidans ATCC 23270 7134332 YP_002427655.1 CDS AFE_3302 NC_011761.1 2976115 2976510 R identified by match to protein family HMM PF01230; HIT family protein complement(2976115..2976510) Acidithiobacillus ferrooxidans ATCC 23270 7136520 YP_002427656.1 CDS hemL NC_011761.1 2976507 2977799 R Converts (S)-4-amino-5-oxopentanoate to 5-aminolevulinate during the porphyrin biosynthesis pathway; glutamate-1-semialdehyde aminotransferase complement(2976507..2977799) Acidithiobacillus ferrooxidans ATCC 23270 7136891 YP_002427657.1 CDS thiE NC_011761.1 2977802 2978455 R identified by similarity to SP:P39594; match to protein family HMM PF02581; match to protein family HMM TIGR00693; thiamine-phosphate pyrophosphorylase complement(2977802..2978455) Acidithiobacillus ferrooxidans ATCC 23270 7134557 YP_002427658.1 CDS AFE_3305 NC_011761.1 2978442 2979275 R identified by match to protein family HMM PF08543; phosphomethylpyrimidine kinase complement(2978442..2979275) Acidithiobacillus ferrooxidans ATCC 23270 7136714 YP_002427659.1 CDS AFE_3306 NC_011761.1 2979330 2979452 R identified by glimmer; putative; hypothetical protein complement(2979330..2979452) Acidithiobacillus ferrooxidans ATCC 23270 7135606 YP_002427660.1 CDS AFE_3307 NC_011761.1 2979571 2980356 R identified by similarity to GB:CAE31946.1; match to protein family HMM PF00106; match to protein family HMM PF08659; short chain dehydrogenase complement(2979571..2980356) Acidithiobacillus ferrooxidans ATCC 23270 7136499 YP_002427661.1 CDS AFE_3308 NC_011761.1 2980590 2980829 D identified by glimmer; putative; hypothetical protein 2980590..2980829 Acidithiobacillus ferrooxidans ATCC 23270 7137084 YP_002427662.1 CDS dnaA NC_011761.1 2980841 2982199 D identified by match to protein family HMM PF00308; match to protein family HMM PF08299; match to protein family HMM TIGR00362; chromosomal replication initiator protein DnaA 2980841..2982199 Acidithiobacillus ferrooxidans ATCC 23270 7134130 AFE_0084 tRNA AFE_0084 NC_011761.1 83987 84064 D tRNA-Lys 83987..84064 Acidithiobacillus ferrooxidans ATCC 23270 7134220 AFE_0145 tRNA AFE_0145 NC_011761.1 132538 132613 D tRNA-Phe 132538..132613 Acidithiobacillus ferrooxidans ATCC 23270 7135939 AFE_0308 tRNA AFE_0308 NC_011761.1 275027 275111 D tRNA-Tyr 275027..275111 Acidithiobacillus ferrooxidans ATCC 23270 7134394 AFE_0309 tRNA AFE_0309 NC_011761.1 275169 275242 D tRNA-Gly 275169..275242 Acidithiobacillus ferrooxidans ATCC 23270 7136009 AFE_0310 tRNA AFE_0310 NC_011761.1 275251 275326 D tRNA-Thr 275251..275326 Acidithiobacillus ferrooxidans ATCC 23270 7135861 AFE_0312 tRNA AFE_0312 NC_011761.1 276614 276691 D tRNA-Trp 276614..276691 Acidithiobacillus ferrooxidans ATCC 23270 7135680 AFE_0383 tRNA AFE_0383 NC_011761.1 333009 333087 D tRNA-Met 333009..333087 Acidithiobacillus ferrooxidans ATCC 23270 7135067 AFE_0385 tRNA AFE_0385 NC_011761.1 334791 334869 D tRNA-Ile 334791..334869 Acidithiobacillus ferrooxidans ATCC 23270 7134945 AFE_0386 tRNA AFE_0386 NC_011761.1 334871 334948 D tRNA-Ala 334871..334948 Acidithiobacillus ferrooxidans ATCC 23270 7135852 AFE_0578 tRNA AFE_0578 NC_011761.1 516964 517041 D tRNA-Thr 516964..517041 Acidithiobacillus ferrooxidans ATCC 23270 7136410 AFE_0586 tRNA AFE_0586 NC_011761.1 519394 519469 R tRNA-Arg complement(519394..519469) Acidithiobacillus ferrooxidans ATCC 23270 7134546 AFE_0656 tRNA AFE_0656 NC_011761.1 587814 587908 D tRNA-Ser 587814..587908 Acidithiobacillus ferrooxidans ATCC 23270 7136814 AFE_0844 tRNA AFE_0844 NC_011761.1 770087 770165 R tRNA-Arg complement(770087..770165) Acidithiobacillus ferrooxidans ATCC 23270 7136197 AFE_0855 tRNA AFE_0855 NC_011761.1 781400 781474 D tRNA-Gly 781400..781474 Acidithiobacillus ferrooxidans ATCC 23270 7134403 AFE_0856 tRNA AFE_0856 NC_011761.1 781514 781589 D tRNA-Cys 781514..781589 Acidithiobacillus ferrooxidans ATCC 23270 7136010 AFE_0891 tRNA AFE_0891 NC_011761.1 805843 805918 R tRNA-Thr complement(805843..805918) Acidithiobacillus ferrooxidans ATCC 23270 7134125 AFE_0915 tRNA AFE_0915 NC_011761.1 830923 831000 D tRNA-Val 830923..831000 Acidithiobacillus ferrooxidans ATCC 23270 7136352 AFE_0916 tRNA AFE_0916 NC_011761.1 831010 831088 D tRNA-Asp 831010..831088 Acidithiobacillus ferrooxidans ATCC 23270 7135854 AFE_0994 tRNA AFE_0994 NC_011761.1 909149 909224 D tRNA-Ala 909149..909224 Acidithiobacillus ferrooxidans ATCC 23270 7134210 AFE_1155 tRNA AFE_1155 NC_011761.1 1027145 1027220 R tRNA-Arg complement(1027145..1027220) Acidithiobacillus ferrooxidans ATCC 23270 7135246 AFE_1156 tRNA AFE_1156 NC_011761.1 1027226 1027301 R tRNA-Arg complement(1027226..1027301) Acidithiobacillus ferrooxidans ATCC 23270 7135862 AFE_1157 tRNA AFE_1157 NC_011761.1 1027556 1027640 R tRNA-Leu complement(1027556..1027640) Acidithiobacillus ferrooxidans ATCC 23270 7136033 AFE_1158 tRNA AFE_1158 NC_011761.1 1027655 1027730 R tRNA-Phe complement(1027655..1027730) Acidithiobacillus ferrooxidans ATCC 23270 7136005 AFE_1159 tRNA AFE_1159 NC_011761.1 1027735 1027821 R tRNA-Leu complement(1027735..1027821) Acidithiobacillus ferrooxidans ATCC 23270 7135999 AFE_1160 tRNA AFE_1160 NC_011761.1 1027970 1028045 R tRNA-Lys complement(1027970..1028045) Acidithiobacillus ferrooxidans ATCC 23270 7136015 AFE_1161 tRNA AFE_1161 NC_011761.1 1028058 1028133 R tRNA-Gln complement(1028058..1028133) Acidithiobacillus ferrooxidans ATCC 23270 7135834 AFE_1162 tRNA AFE_1162 NC_011761.1 1028140 1028227 R tRNA-Leu complement(1028140..1028227) Acidithiobacillus ferrooxidans ATCC 23270 7135867 AFE_1163 tRNA AFE_1163 NC_011761.1 1028242 1028320 R tRNA-Glu complement(1028242..1028320) Acidithiobacillus ferrooxidans ATCC 23270 7136003 AFE_1164 tRNA AFE_1164 NC_011761.1 1028332 1028408 R tRNA-Glu complement(1028332..1028408) Acidithiobacillus ferrooxidans ATCC 23270 7136013 AFE_1165 tRNA AFE_1165 NC_011761.1 1028409 1028484 R tRNA-Arg complement(1028409..1028484) Acidithiobacillus ferrooxidans ATCC 23270 7135860 AFE_1166 tRNA AFE_1166 NC_011761.1 1028877 1028952 R tRNA-Ile complement(1028877..1028952) Acidithiobacillus ferrooxidans ATCC 23270 7136035 AFE_1167 tRNA AFE_1167 NC_011761.1 1028958 1029033 R tRNA-Val complement(1028958..1029033) Acidithiobacillus ferrooxidans ATCC 23270 7135857 AFE_1168 tRNA AFE_1168 NC_011761.1 1029039 1029114 R tRNA-Met complement(1029039..1029114) Acidithiobacillus ferrooxidans ATCC 23270 7136018 AFE_1171 tRNA AFE_1171 NC_011761.1 1029986 1030060 R tRNA-Met complement(1029986..1030060) Acidithiobacillus ferrooxidans ATCC 23270 7134353 AFE_1172 tRNA AFE_1172 NC_011761.1 1030071 1030145 R tRNA-Cys complement(1030071..1030145) Acidithiobacillus ferrooxidans ATCC 23270 7136012 AFE_1173 tRNA AFE_1173 NC_011761.1 1030150 1030226 R tRNA-Gln complement(1030150..1030226) Acidithiobacillus ferrooxidans ATCC 23270 7135863 AFE_1175 tRNA AFE_1175 NC_011761.1 1030545 1030620 R tRNA-Thr complement(1030545..1030620) Acidithiobacillus ferrooxidans ATCC 23270 7135339 AFE_1177 tRNA AFE_1177 NC_011761.1 1031415 1031490 R tRNA-Thr complement(1031415..1031490) Acidithiobacillus ferrooxidans ATCC 23270 7135687 AFE_1179 tRNA AFE_1179 NC_011761.1 1032725 1032803 R tRNA-Asp complement(1032725..1032803) Acidithiobacillus ferrooxidans ATCC 23270 7135401 AFE_1180 tRNA AFE_1180 NC_011761.1 1032815 1032892 R tRNA-His complement(1032815..1032892) Acidithiobacillus ferrooxidans ATCC 23270 7135866 AFE_1181 tRNA AFE_1181 NC_011761.1 1032910 1033001 R tRNA-Ser complement(1032910..1033001) Acidithiobacillus ferrooxidans ATCC 23270 7136022 AFE_1182 tRNA AFE_1182 NC_011761.1 1033006 1033081 R tRNA-Lys complement(1033006..1033081) Acidithiobacillus ferrooxidans ATCC 23270 7135859 AFE_1183 tRNA AFE_1183 NC_011761.1 1033086 1033163 R tRNA-Pro complement(1033086..1033163) Acidithiobacillus ferrooxidans ATCC 23270 7136024 AFE_1184 tRNA AFE_1184 NC_011761.1 1033175 1033259 R tRNA-Tyr complement(1033175..1033259) Acidithiobacillus ferrooxidans ATCC 23270 7136034 AFE_1185 tRNA AFE_1185 NC_011761.1 1033390 1033481 R tRNA-Ser complement(1033390..1033481) Acidithiobacillus ferrooxidans ATCC 23270 7136004 AFE_1186 tRNA AFE_1186 NC_011761.1 1033528 1033618 R tRNA-Ser complement(1033528..1033618) Acidithiobacillus ferrooxidans ATCC 23270 7136014 AFE_1187 tRNA AFE_1187 NC_011761.1 1033694 1033780 R tRNA-Leu complement(1033694..1033780) Acidithiobacillus ferrooxidans ATCC 23270 7135995 AFE_1188 tRNA AFE_1188 NC_011761.1 1033799 1033891 R tRNA-Ser complement(1033799..1033891) Acidithiobacillus ferrooxidans ATCC 23270 7136029 AFE_1189 tRNA AFE_1189 NC_011761.1 1034132 1034210 R tRNA-Pro complement(1034132..1034210) Acidithiobacillus ferrooxidans ATCC 23270 7136019 AFE_1190 tRNA AFE_1190 NC_011761.1 1034309 1034385 R tRNA-Asn complement(1034309..1034385) Acidithiobacillus ferrooxidans ATCC 23270 7135848 AFE_1191 tRNA AFE_1191 NC_011761.1 1035026 1035103 R tRNA-Ala complement(1035026..1035103) Acidithiobacillus ferrooxidans ATCC 23270 7136007 AFE_1192 tRNA AFE_1192 NC_011761.1 1035250 1035325 R tRNA-Gly complement(1035250..1035325) Acidithiobacillus ferrooxidans ATCC 23270 7135858 AFE_1193 tRNA AFE_1193 NC_011761.1 1035589 1035660 R tRNA-OTHER complement(1035589..1035660) Acidithiobacillus ferrooxidans ATCC 23270 7135856 AFE_1194 tRNA AFE_1194 NC_011761.1 1035935 1036013 R tRNA-Trp complement(1035935..1036013) Acidithiobacillus ferrooxidans ATCC 23270 7135841 AFE_1555 tRNA AFE_1555 NC_011761.1 1346954 1347030 D tRNA-Val 1346954..1347030 Acidithiobacillus ferrooxidans ATCC 23270 7135938 AFE_1829 tRNA AFE_1829 NC_011761.1 1593289 1593366 D tRNA-Asn 1593289..1593366 Acidithiobacillus ferrooxidans ATCC 23270 7135800 AFE_1890 tRNA AFE_1890 NC_011761.1 1649108 1649194 R tRNA-Leu complement(1649108..1649194) Acidithiobacillus ferrooxidans ATCC 23270 7135292 AFE_1916 tRNA AFE_1916 NC_011761.1 1670787 1670877 D tRNA-Ser 1670787..1670877 Acidithiobacillus ferrooxidans ATCC 23270 7137048 AFE_1946 tRNA AFE_1946 NC_011761.1 1696422 1696508 R tRNA-Leu complement(1696422..1696508) Acidithiobacillus ferrooxidans ATCC 23270 7135660 AFE_1954 tRNA AFE_1954 NC_011761.1 1705506 1705581 R tRNA-Lys complement(1705506..1705581) Acidithiobacillus ferrooxidans ATCC 23270 7136984 AFE_2016 tRNA AFE_2016 NC_011761.1 1762799 1762875 R tRNA-Arg complement(1762799..1762875) Acidithiobacillus ferrooxidans ATCC 23270 7134447 AFE_2055 tRNA AFE_2055 NC_011761.1 1805146 1805238 R tRNA-Ser complement(1805146..1805238) Acidithiobacillus ferrooxidans ATCC 23270 7134891 AFE_2128 tRNA AFE_2128 NC_011761.1 1882360 1882437 D tRNA-Glu 1882360..1882437 Acidithiobacillus ferrooxidans ATCC 23270 7134062 AFE_2213 tRNA AFE_2213 NC_011761.1 1963406 1963492 D tRNA-Leu 1963406..1963492 Acidithiobacillus ferrooxidans ATCC 23270 7134649 AFE_2315 tRNA AFE_2315 NC_011761.1 2063586 2063674 R tRNA-Leu complement(2063586..2063674) Acidithiobacillus ferrooxidans ATCC 23270 7135892 AFE_2326 tRNA AFE_2326 NC_011761.1 2072761 2072837 D tRNA-Pro 2072761..2072837 Acidithiobacillus ferrooxidans ATCC 23270 7137231 AFE_2335 tRNA AFE_2335 NC_011761.1 2080728 2080804 R tRNA-Met complement(2080728..2080804) Acidithiobacillus ferrooxidans ATCC 23270 7134290 AFE_2353 tRNA AFE_2353 NC_011761.1 2098636 2098713 D tRNA-Ala 2098636..2098713 Acidithiobacillus ferrooxidans ATCC 23270 7137016 AFE_2359 tRNA AFE_2359 NC_011761.1 2107046 2107123 R tRNA-Glu complement(2107046..2107123) Acidithiobacillus ferrooxidans ATCC 23270 7136126 AFE_2370 tRNA AFE_2370 NC_011761.1 2117160 2117235 D tRNA-Gly 2117160..2117235 Acidithiobacillus ferrooxidans ATCC 23270 7134538 AFE_2606 tRNA AFE_2606 NC_011761.1 2315014 2315090 R tRNA-Pro complement(2315014..2315090) Acidithiobacillus ferrooxidans ATCC 23270 7136604 AFE_2615 tRNA AFE_2615 NC_011761.1 2322423 2322497 R tRNA-Val complement(2322423..2322497) Acidithiobacillus ferrooxidans ATCC 23270 7136954 AFE_2631 tRNA AFE_2631 NC_011761.1 2336971 2337055 R tRNA-Leu complement(2336971..2337055) Acidithiobacillus ferrooxidans ATCC 23270 7136374 AFE_2735 tRNA AFE_2735 NC_011761.1 2435808 2435884 R tRNA-Arg complement(2435808..2435884) Acidithiobacillus ferrooxidans ATCC 23270 7134792 AFE_2742 tRNA AFE_2742 NC_011761.1 2441446 2441521 D tRNA-Gln 2441446..2441521 Acidithiobacillus ferrooxidans ATCC 23270 7135927 AFE_2765 tRNA AFE_2765 NC_011761.1 2460870 2460946 D tRNA-Gln 2460870..2460946 Acidithiobacillus ferrooxidans ATCC 23270 7137268 AFE_2767 tRNA AFE_2767 NC_011761.1 2462003 2462080 D tRNA-His 2462003..2462080 Acidithiobacillus ferrooxidans ATCC 23270 7137299 AFE_2898 tRNA AFE_2898 NC_011761.1 2575012 2575090 R tRNA-Pro complement(2575012..2575090) Acidithiobacillus ferrooxidans ATCC 23270 7136411 AFE_3082 tRNA AFE_3082 NC_011761.1 2769589 2769666 R tRNA-Ala complement(2769589..2769666) Acidithiobacillus ferrooxidans ATCC 23270 7134950 AFE_3083 tRNA AFE_3083 NC_011761.1 2769668 2769746 R tRNA-Ile complement(2769668..2769746) Acidithiobacillus ferrooxidans ATCC 23270 7135996 AFE_3233 tRNA AFE_3233 NC_011761.1 2912963 2913039 R tRNA-Met complement(2912963..2913039) Acidithiobacillus ferrooxidans ATCC 23270 7135488 AFE_0384 rRNA rrsB NC_011761.1 333233 334702 D 16S ribosomal RNA 333233..334702 Acidithiobacillus ferrooxidans ATCC 23270 7135836 AFE_0387 rRNA rrlB NC_011761.1 335188 338076 D 23S ribosomal RNA 335188..338076 Acidithiobacillus ferrooxidans ATCC 23270 7135864 AFE_0388 rRNA rrfB NC_011761.1 338169 338288 D 5S ribosomal RNA 338169..338288 Acidithiobacillus ferrooxidans ATCC 23270 7134949 AFE_3080 rRNA rrfA NC_011761.1 2766249 2766368 R 5S ribosomal RNA complement(2766249..2766368) Acidithiobacillus ferrooxidans ATCC 23270 7136191 AFE_3081 rRNA rrlA NC_011761.1 2766461 2769349 R 23S ribosomal RNA complement(2766461..2769349) Acidithiobacillus ferrooxidans ATCC 23270 7134946 AFE_3084 rRNA rrsA NC_011761.1 2769835 2771304 R 16S ribosomal RNA complement(2769835..2771304) Acidithiobacillus ferrooxidans ATCC 23270 7136017