-- dump date 20140618_184953 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 743299000001 SEQ_END SEQ_END NC_015942.1 3207552 3207552 DR NC_015942.1; contig end 3207552..3207552 Acidithiobacillus ferrivorans SS3 YP_004782570.1 CDS Acife_0001 NC_015942.1 241 1596 D SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: afr:AFE_3309 chromosomal replication initiator protein DnaA; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal; chromosomal replication initiator protein dnaA 241..1596 Acidithiobacillus ferrivorans SS3 11043880 YP_004782571.1 CDS Acife_0002 NC_015942.1 1880 2977 D TIGRFAM: DNA polymerase III, beta chain; PFAM: DNA polymerase III, beta chain; KEGG: afr:AFE_0001 DNA polymerase III, beta subunit; SMART: DNA polymerase III, beta chain; DNA polymerase III subunit beta 1880..2977 Acidithiobacillus ferrivorans SS3 11041368 YP_004782572.1 CDS Acife_0003 NC_015942.1 2979 4037 D TIGRFAM: DNA-binding, RecF; HAMAP: DNA replication and repair protein recF; KEGG: afr:AFE_0002 DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC protein, N-terminal; DNA replication and repair protein recF 2979..4037 Acidithiobacillus ferrivorans SS3 11041369 YP_004782573.1 CDS Acife_0004 NC_015942.1 4034 6436 D TIGRFAM: DNA gyrase, subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; KEGG: afr:AFE_0003 DNA gyrase, B subunit; SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; DNA gyrase subunit B 4034..6436 Acidithiobacillus ferrivorans SS3 11043881 YP_004782574.1 CDS Acife_0005 NC_015942.1 6437 7249 R manually curated; KEGG: afr:AFE_1422 Ser/Thr protein phosphatase family protein; Ser/Thr protein phosphatase family protein complement(6437..7249) Acidithiobacillus ferrivorans SS3 11043882 YP_004782575.1 CDS Acife_0006 NC_015942.1 7313 10822 D manually curated; KEGG: afr:AFE_0004 hypothetical protein; hypothetical protein 7313..10822 Acidithiobacillus ferrivorans SS3 11041370 YP_004782576.1 CDS Acife_0007 NC_015942.1 11136 11387 R TIGRFAM: Septum formation topological specificity factor MinE; HAMAP: Septum formation topological specificity factor MinE; KEGG: afr:AFE_0011 cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; cell division topological specificity factor complement(11136..11387) Acidithiobacillus ferrivorans SS3 11041371 YP_004782577.1 CDS Acife_0008 NC_015942.1 11389 12198 R KEGG: afr:AFE_0012 septum site-determining protein MinD; TIGRFAM: Septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; septum site-determining protein MinD complement(11389..12198) Acidithiobacillus ferrivorans SS3 11041372 YP_004782578.1 CDS Acife_0009 NC_015942.1 12217 12948 R TIGRFAM: Septum formation inhibitor MinC; HAMAP: Septum formation inhibitor MinC; KEGG: afe:Lferr_0014 septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC, C-terminal; Septum formation inhibitor MinC, N-terminal; septum site-determining protein minC complement(12217..12948) Acidithiobacillus ferrivorans SS3 11041373 YP_004782579.1 CDS Acife_0010 NC_015942.1 12978 13304 R PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: afr:AFE_0014 ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(12978..13304) Acidithiobacillus ferrivorans SS3 11043883 YP_004782580.1 CDS Acife_0011 NC_015942.1 13301 15886 R TIGRFAM: DNA topoisomerase I, bacterial-type; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger; KEGG: afr:AFE_0015 DNA topoisomerase I; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; DNA topoisomerase I complement(13301..15886) Acidithiobacillus ferrivorans SS3 11041374 YP_004782581.1 CDS Acife_0012 NC_015942.1 15890 16327 R KEGG: afr:AFE_0016 smg family protein; HAMAP: Protein smg; PFAM: Protein of unknown function DUF494; protein smg complement(15890..16327) Acidithiobacillus ferrivorans SS3 11041375 YP_004782582.1 CDS Acife_0013 NC_015942.1 16337 17434 R KEGG: afr:AFE_0017 DNA processing protein DprA, putative; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A; DNA protecting protein DprA complement(16337..17434) Acidithiobacillus ferrivorans SS3 11041376 YP_004782583.1 CDS Acife_0014 NC_015942.1 17431 18522 R KEGG: afr:AFE_0018 LysM domain protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; peptidoglycan-binding lysin domain-containing protein complement(17431..18522) Acidithiobacillus ferrivorans SS3 11043884 YP_004782584.1 CDS Acife_0015 NC_015942.1 18584 19108 D TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: afr:AFE_0019 polypeptide deformylase; PFAM: Formylmethionine deformylase; peptide deformylase 18584..19108 Acidithiobacillus ferrivorans SS3 11043885 YP_004782585.1 CDS Acife_0016 NC_015942.1 19101 20042 D TIGRFAM: Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; KEGG: afr:AFE_0020 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; methionyl-tRNA formyltransferase 19101..20042 Acidithiobacillus ferrivorans SS3 11041377 YP_004782586.1 CDS Acife_0017 NC_015942.1 20039 21337 D KEGG: afr:AFE_0021 sun protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44; sun protein 20039..21337 Acidithiobacillus ferrivorans SS3 11041378 YP_004782587.1 CDS Acife_0018 NC_015942.1 21334 21732 D KEGG: afr:AFE_0022 hypothetical protein; hypothetical protein 21334..21732 Acidithiobacillus ferrivorans SS3 11041379 YP_004782588.1 CDS Acife_0019 NC_015942.1 21702 23915 D KEGG: afe:Lferr_0024 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; integral membrane sensor signal transduction histidine kinase 21702..23915 Acidithiobacillus ferrivorans SS3 11041380 YP_004782589.1 CDS Acife_0020 NC_015942.1 23937 25337 D KEGG: afr:AFE_0024 nitrogen assimilation regulatory protein NtrX, putative; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; two component sigma-54 specific Fis family transcriptional regulator 23937..25337 Acidithiobacillus ferrivorans SS3 11041381 YP_004782590.1 CDS Acife_0021 NC_015942.1 25550 26893 D KEGG: afe:Lferr_0031 hypothetical protein; hypothetical protein 25550..26893 Acidithiobacillus ferrivorans SS3 11041382 YP_004782591.1 CDS Acife_0022 NC_015942.1 27052 28695 D KEGG: ppd:Ppro_1391 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer 27052..28695 Acidithiobacillus ferrivorans SS3 11043886 YP_004782592.1 CDS Acife_0023 NC_015942.1 28695 28820 D hypothetical protein 28695..28820 Acidithiobacillus ferrivorans SS3 11043887 YP_004782593.1 CDS Acife_0024 NC_015942.1 28946 37516 R PFAM: Glycosyltransferase 36; Putative carbohydrate binding; Glycosyltransferase 36 associated; KEGG: nit:NAL212_0278 hypothetical protein; glycosyl transferase family protein complement(28946..37516) Acidithiobacillus ferrivorans SS3 11041383 YP_004782594.1 CDS Acife_0025 NC_015942.1 37711 37839 R hypothetical protein complement(37711..37839) Acidithiobacillus ferrivorans SS3 11041384 YP_004782595.1 CDS Acife_0026 NC_015942.1 37905 38234 R hypothetical protein complement(37905..38234) Acidithiobacillus ferrivorans SS3 11041385 YP_004782596.1 CDS Acife_0027 NC_015942.1 38467 42900 D TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; GAF; KEGG: afe:Lferr_2664 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; GAF; PAC motif; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 38467..42900 Acidithiobacillus ferrivorans SS3 11041386 YP_004782597.1 CDS Acife_0028 NC_015942.1 42966 43334 R KEGG: tmz:Tmz1t_2038 arsenate reductase and related; TIGRFAM: Conserved hypothetical protein, ArsC related; PFAM: Arsenate reductase-like; ArsC family protein complement(42966..43334) Acidithiobacillus ferrivorans SS3 11041387 YP_004782598.1 CDS Acife_0029 NC_015942.1 43331 44458 R PFAM: Protein of unknown function DUF185; KEGG: afr:AFE_0130 hypothetical protein; hypothetical protein complement(43331..44458) Acidithiobacillus ferrivorans SS3 11041388 YP_004782599.1 CDS Acife_0030 NC_015942.1 44468 45208 D PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_0129 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 44468..45208 Acidithiobacillus ferrivorans SS3 11041389 YP_004782600.1 CDS Acife_0031 NC_015942.1 45208 45597 D PFAM: NIF system FeS cluster assembly, NifU, C-terminal; KEGG: afr:AFE_0128 NifU domain protein; nitrogen-fixing NifU domain-containing protein 45208..45597 Acidithiobacillus ferrivorans SS3 11041390 YP_004782601.1 CDS Acife_0032 NC_015942.1 45594 46934 D SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; KEGG: afr:AFE_0127 ribosomal protein S12 methylthiotransferase; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; 30S ribosomal protein S12 methylthiotransferase rimO 45594..46934 Acidithiobacillus ferrivorans SS3 11041391 YP_004782602.1 CDS Acife_0033 NC_015942.1 46952 47311 R KEGG: afr:AFE_0126 dihydroneopterin aldolase; TIGRFAM: Dihydroneopterin aldolase; Dihydroneopterin aldolase subgroup; PFAM: Dihydroneopterin aldolase; dihydroneopterin aldolase complement(46952..47311) Acidithiobacillus ferrivorans SS3 11043888 YP_004782603.1 CDS Acife_0034 NC_015942.1 47384 47980 D TIGRFAM: Membrane protein YgiH; HAMAP: Protein of unknown function DUF205; KEGG: afr:AFE_0125 hypothetical protein; PFAM: Protein of unknown function DUF205; glycerol-3-phosphate acyltransferase 47384..47980 Acidithiobacillus ferrivorans SS3 11041392 YP_004782604.1 CDS Acife_0035 NC_015942.1 48009 49022 R TIGRFAM: putative glycoprotease GCP; Peptidase M22, glycoprotease, subgroup; HAMAP: O-sialoglycoprotein endopeptidase; KEGG: afr:AFE_0123 O-sialoglycoprotein endopeptidase; PFAM: Peptidase M22, glycoprotease; O-sialoglycoprotein endopeptidase complement(48009..49022) Acidithiobacillus ferrivorans SS3 11041393 YP_004782605.1 CDS Acife_0036 NC_015942.1 49019 49846 R PFAM: Protein of unknown function DUF455; KEGG: cti:RALTA_A1173 hypothetical protein; hypothetical protein complement(49019..49846) Acidithiobacillus ferrivorans SS3 11041394 YP_004782606.1 CDS Acife_0037 NC_015942.1 49965 51476 R PFAM: Pyrrolo-quinoline quinone repeat; KEGG: afr:AFE_0029 tetrathionate hydrolase; pyrrolo-quinoline quinone repeat-containing protein complement(49965..51476) Acidithiobacillus ferrivorans SS3 11041395 YP_004782607.1 CDS Acife_0038 NC_015942.1 51819 52070 D TIGRFAM: Prevent-host-death protein; KEGG: nde:NIDE2383 addiction module antitoxin YefM; prevent-host-death family protein 51819..52070 Acidithiobacillus ferrivorans SS3 11043889 YP_004782608.1 CDS Acife_0039 NC_015942.1 52067 52321 D KEGG: nde:NIDE2382 addiction module toxin YoeB; TIGRFAM: Addiction module toxin, Txe/YoeB; PFAM: Addiction module toxin, Txe/YoeB; Txe/YoeB family addiction module toxin 52067..52321 Acidithiobacillus ferrivorans SS3 11043890 YP_004782609.1 CDS Acife_0040 NC_015942.1 52686 52931 D KEGG: eba:ebB112 hypothetical protein; hypothetical protein 52686..52931 Acidithiobacillus ferrivorans SS3 11041396 YP_004782610.1 CDS Acife_0041 NC_015942.1 52928 53323 D KEGG: neu:NE1589 hypothetical protein; hypothetical protein 52928..53323 Acidithiobacillus ferrivorans SS3 11041397 YP_004782611.1 CDS Acife_0043 NC_015942.1 53782 54060 R KEGG: tin:Tint_0628 hypothetical protein; hypothetical protein complement(53782..54060) Acidithiobacillus ferrivorans SS3 11041399 YP_004782612.1 CDS Acife_0044 NC_015942.1 54032 54322 R PFAM: Protein of unknown function DUF497; KEGG: tin:Tint_0627 protein of unknown function DUF497; hypothetical protein complement(54032..54322) Acidithiobacillus ferrivorans SS3 11043891 YP_004782613.1 CDS Acife_0046 NC_015942.1 55206 55649 R hypothetical protein complement(55206..55649) Acidithiobacillus ferrivorans SS3 11041400 YP_004782614.1 CDS Acife_0048 NC_015942.1 56164 56619 R hypothetical protein complement(56164..56619) Acidithiobacillus ferrivorans SS3 11041402 YP_004782615.1 CDS Acife_0049 NC_015942.1 56710 57138 R PFAM: NUDIX hydrolase domain; KEGG: azo:azo3712 hypothetical protein; NUDIX hydrolase complement(56710..57138) Acidithiobacillus ferrivorans SS3 11041403 YP_004782616.1 CDS Acife_0050 NC_015942.1 57517 60603 R PFAM: Acriflavin resistance protein; KEGG: afe:Lferr_0111 acriflavin resistance protein; acriflavin resistance protein complement(57517..60603) Acidithiobacillus ferrivorans SS3 11041404 YP_004782617.1 CDS Acife_0051 NC_015942.1 60612 61697 R KEGG: afr:AFE_0109 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit complement(60612..61697) Acidithiobacillus ferrivorans SS3 11041405 YP_004782618.1 CDS Acife_0052 NC_015942.1 61694 63250 R KEGG: afr:AFE_0108 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein complement(61694..63250) Acidithiobacillus ferrivorans SS3 11041406 YP_004782619.1 CDS Acife_0053 NC_015942.1 63440 64186 D KEGG: afr:AFE_0107 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; two component winged helix family transcriptional regulator 63440..64186 Acidithiobacillus ferrivorans SS3 11043893 YP_004782620.1 CDS Acife_0054 NC_015942.1 64186 65463 D KEGG: afr:AFE_0106 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; integral membrane sensor signal transduction histidine kinase 64186..65463 Acidithiobacillus ferrivorans SS3 11041407 YP_004782621.1 CDS Acife_0055 NC_015942.1 65569 66834 D KEGG: afr:AFE_0105 metal ion transporter, NRAMP family; NRAMP family metal ion transporter 65569..66834 Acidithiobacillus ferrivorans SS3 11041408 YP_004782622.1 CDS Acife_0056 NC_015942.1 66938 67648 D PFAM: PspA/IM30; KEGG: afr:AFE_2017 PspA/IM30 family; phage shock protein PspA 66938..67648 Acidithiobacillus ferrivorans SS3 11041409 YP_004782623.1 CDS Acife_0057 NC_015942.1 67650 67994 D KEGG: afr:AFE_2788 hypothetical protein; HAMAP: UPF0145 protein ybjQ; PFAM: Uncharacterised protein family UPF0145; hypothetical protein 67650..67994 Acidithiobacillus ferrivorans SS3 11041410 YP_004782624.1 CDS Acife_0058 NC_015942.1 67997 68560 D KEGG: afr:AFE_0467 hypothetical protein; hypothetical protein 67997..68560 Acidithiobacillus ferrivorans SS3 11043894 YP_004782625.1 CDS Acife_0059 NC_015942.1 68533 68775 R KEGG: afr:AFE_0104 hypothetical protein; hypothetical protein complement(68533..68775) Acidithiobacillus ferrivorans SS3 11043895 YP_004782626.1 CDS Acife_0060 NC_015942.1 69276 69764 D PFAM: Protein of unknown function DUF2495; KEGG: afr:AFE_3115 hypothetical protein; hypothetical protein 69276..69764 Acidithiobacillus ferrivorans SS3 11041411 YP_004782627.1 CDS Acife_0061 NC_015942.1 69945 71300 R KEGG: afr:AFE_0137 hypothetical protein; hypothetical protein complement(69945..71300) Acidithiobacillus ferrivorans SS3 11041412 YP_004782628.1 CDS Acife_0062 NC_015942.1 71356 72114 R KEGG: nwi:Nwi_0671 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter complement(71356..72114) Acidithiobacillus ferrivorans SS3 11041413 YP_004782629.1 CDS Acife_0063 NC_015942.1 72144 73028 R PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: nwi:Nwi_0673 binding-protein dependent transport system inner membrane protein; ABC transporter permease complement(72144..73028) Acidithiobacillus ferrivorans SS3 11041414 YP_004782630.1 CDS Acife_0064 NC_015942.1 73131 74477 R KEGG: nwi:Nwi_0674 ABC transporter sulfonate/nitrate transport system substrate-binding protein; ABC transporter sulfonate/nitrate transport system substrate-binding protein complement(73131..74477) Acidithiobacillus ferrivorans SS3 11043896 YP_004782631.1 CDS Acife_0065 NC_015942.1 74837 75124 R manually curated; KEGG: afe:Lferr_0430 hypothetical protein; hypothetical protein complement(74837..75124) Acidithiobacillus ferrivorans SS3 11043897 YP_004782632.1 CDS Acife_0066 NC_015942.1 75141 78632 R KEGG: afr:AFE_0004 hypothetical protein; hypothetical protein complement(75141..78632) Acidithiobacillus ferrivorans SS3 11041415 YP_004782633.1 CDS Acife_0067 NC_015942.1 78656 78985 R PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: hha:Hhal_1658 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(78656..78985) Acidithiobacillus ferrivorans SS3 11041416 YP_004782634.1 CDS Acife_0068 NC_015942.1 78997 79926 R PFAM: PBS lyase HEAT-like repeat; HEAT; KEGG: bch:Bcen2424_1977 heat domain-containing protein; PBS lyase HEAT domain-containing protein repeat-containing protein complement(78997..79926) Acidithiobacillus ferrivorans SS3 11041417 YP_004782635.1 CDS Acife_0069 NC_015942.1 79954 80187 R PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: vpe:Varpa_2478 ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(79954..80187) Acidithiobacillus ferrivorans SS3 11041418 YP_004782636.1 CDS Acife_0070 NC_015942.1 80209 81939 R PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; KEGG: vpe:Varpa_2479 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(80209..81939) Acidithiobacillus ferrivorans SS3 11041419 YP_004782637.1 CDS Acife_0071 NC_015942.1 81940 82698 R KEGG: cti:RALTA_B2018 transcriptional regulator GntR family; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR family transcriptional regulator complement(81940..82698) Acidithiobacillus ferrivorans SS3 11041420 YP_004782638.1 CDS Acife_0072 NC_015942.1 83364 84755 R TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; Radical SAM; KEGG: afr:AFE_0134 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase complement(83364..84755) Acidithiobacillus ferrivorans SS3 11043898 YP_004782639.1 CDS Acife_0073 NC_015942.1 84793 85725 R PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_0135 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(84793..85725) Acidithiobacillus ferrivorans SS3 11041422 YP_004782640.1 CDS Acife_0074 NC_015942.1 85816 87318 D PFAM: Outer membrane porin, bacterial; KEGG: afr:AFE_0137 hypothetical protein; outer membrane porin 85816..87318 Acidithiobacillus ferrivorans SS3 11041423 YP_004782641.1 CDS Acife_0075 NC_015942.1 87446 88576 R KEGG: afe:Lferr_0311 lipopolysaccharide heptosyltransferase II; TIGRFAM: Lipopolysaccharide heptosyltransferase II; PFAM: Glycosyl transferase, family 9; lipopolysaccharide heptosyltransferase II complement(87446..88576) Acidithiobacillus ferrivorans SS3 11041424 YP_004782642.1 CDS Acife_0076 NC_015942.1 88578 89342 R PFAM: Protein of unknown function DUF155; KEGG: afr:AFE_0139 hypothetical protein; hypothetical protein complement(88578..89342) Acidithiobacillus ferrivorans SS3 11041425 YP_004782643.1 CDS Acife_0077 NC_015942.1 89346 90731 R PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; KEGG: afr:AFE_0140 oxidase, FAD-binding; FAD linked oxidase domain-containing protein complement(89346..90731) Acidithiobacillus ferrivorans SS3 11043899 YP_004782644.1 CDS Acife_0078 NC_015942.1 90728 91804 R TIGRFAM: RfaE bifunctional protein, domain II; Cytidyltransferase-related; HAMAP: Phosphoheptose isomerase; KEGG: afr:AFE_0141 phosphoheptose isomerase/cytidylyltransferase; PFAM: Cytidylyltransferase; Sugar isomerase (SIS); phosphoheptose isomerase complement(90728..91804) Acidithiobacillus ferrivorans SS3 11043900 YP_004782645.1 CDS Acife_0079 NC_015942.1 91801 92166 R TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: afr:AFE_0142 conserved hypothetical protein TIGR00252; PFAM: Uncharacterised protein family UPF0102; hypothetical protein complement(91801..92166) Acidithiobacillus ferrivorans SS3 11041426 YP_004782646.1 CDS Acife_0080 NC_015942.1 92170 94014 R KEGG: afr:AFE_0143 lipoprotein, putative; lipoprotein complement(92170..94014) Acidithiobacillus ferrivorans SS3 11041427 YP_004782647.1 CDS Acife_0081 NC_015942.1 94084 94959 D TIGRFAM: Uncharacterised protein family UPF0011; HAMAP: Ribosomal RNA small subunit methyltransferase I; KEGG: afr:AFE_0144 tetrapyrrole methylase family protein; PFAM: Tetrapyrrole methylase; ribosomal RNA small subunit methyltransferase I 94084..94959 Acidithiobacillus ferrivorans SS3 11041428 YP_004782648.1 CDS Acife_0082 NC_015942.1 95557 96690 D PFAM: Di-haem cytochrome c peroxidase; KEGG: acr:Acry_2827 cytochrome-c peroxidase; di-heme cytochrome c peroxidase 95557..96690 Acidithiobacillus ferrivorans SS3 11041429 YP_004782649.1 CDS Acife_0083 NC_015942.1 96794 98644 D PFAM: ResB-like; KEGG: afr:AFE_3112 cytochrome c-type biogenesis protein ResB; ResB family protein 96794..98644 Acidithiobacillus ferrivorans SS3 11041430 YP_004782650.1 CDS Acife_0084 NC_015942.1 98637 99824 D KEGG: afe:Lferr_2711 cytochrome c-type biogenesis protein CcsB; TIGRFAM: Cytochrome c-type biogenesis protein CcsA; PFAM: Cytochrome c assembly protein; cytochrome c-type biogenesis protein CcsB 98637..99824 Acidithiobacillus ferrivorans SS3 11041431 YP_004782651.1 CDS Acife_0085 NC_015942.1 100110 100313 D KEGG: afr:AFE_0590 cold-shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 100110..100313 Acidithiobacillus ferrivorans SS3 11041432 YP_004782652.1 CDS Acife_0086 NC_015942.1 100426 100701 R hypothetical protein complement(100426..100701) Acidithiobacillus ferrivorans SS3 11041433 YP_004782653.1 CDS Acife_0087 NC_015942.1 101077 105009 D TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; PAS fold-4; KEGG: afe:Lferr_2664 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate cyclase, predicted; GAF; Diguanylate phosphodiesterase, predicted; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 101077..105009 Acidithiobacillus ferrivorans SS3 11041434 YP_004782654.1 CDS Acife_0088 NC_015942.1 105068 106558 R KEGG: afr:AFE_2954 ribonuclease, Rne/Rng family; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain; Rne/Rng family ribonuclease complement(105068..106558) Acidithiobacillus ferrivorans SS3 11043902 YP_004782655.1 CDS Acife_0089 NC_015942.1 106555 107142 R TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: afr:AFE_2953 maf protein; PFAM: Maf-like protein; septum formation protein Maf complement(106555..107142) Acidithiobacillus ferrivorans SS3 11041435 YP_004782656.1 CDS Acife_0090 NC_015942.1 107139 108044 R KEGG: afe:Lferr_2565 hypothetical protein; hypothetical protein complement(107139..108044) Acidithiobacillus ferrivorans SS3 11041436 YP_004782657.1 CDS Acife_0091 NC_015942.1 108041 108475 R KEGG: afe:Lferr_2564 hypothetical protein; hypothetical protein complement(108041..108475) Acidithiobacillus ferrivorans SS3 11043903 YP_004782658.1 CDS Acife_0092 NC_015942.1 108483 108956 R KEGG: afr:AFE_2950 rRNA large subunit methyltransferase; HAMAP: Ribosomal RNA large subunit methyltransferase H; PFAM: SPOUT methyltransferase, predicted; ribosomal RNA large subunit methyltransferase H complement(108483..108956) Acidithiobacillus ferrivorans SS3 11041437 YP_004782659.1 CDS Acife_0093 NC_015942.1 108963 109319 R KEGG: afr:AFE_2949 iojap-related protein; TIGRFAM: Iojap-related protein; PFAM: Iojap-related protein; iojap-like protein complement(108963..109319) Acidithiobacillus ferrivorans SS3 11041438 YP_004782660.1 CDS Acife_0094 NC_015942.1 109343 109999 R TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; HAMAP: nicotinate-nucleotide adenylyltransferase; KEGG: afr:AFE_2948 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: Cytidylyltransferase; nicotinate-nucleotide adenylyltransferase complement(109343..109999) Acidithiobacillus ferrivorans SS3 11043904 YP_004782661.1 CDS Acife_0095 NC_015942.1 110071 110985 R KEGG: afr:AFE_2947 thiol:disulfide interchange protein DsbG, putative; thiol:disulfide interchange protein DsbG complement(110071..110985) Acidithiobacillus ferrivorans SS3 11041439 YP_004782662.1 CDS Acife_0096 NC_015942.1 111159 111746 D TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: afr:AFE_2946 peptide-methionine (S)-S-oxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA; peptide methionine sulfoxide reductase msrA 111159..111746 Acidithiobacillus ferrivorans SS3 11041440 YP_004782663.1 CDS Acife_0097 NC_015942.1 111761 112186 D TIGRFAM: Methionine sulphoxide reductase B; HAMAP: Peptide methionine sulfoxide reductase msrB; KEGG: afr:AFE_2945 methionine-R-sulfoxide reductase; PFAM: Methionine sulphoxide reductase B; peptide methionine sulfoxide reductase msrB 111761..112186 Acidithiobacillus ferrivorans SS3 11043905 YP_004782664.1 CDS Acife_0098 NC_015942.1 112490 113107 D KEGG: afr:AFE_0961 hypothetical protein; hypothetical protein 112490..113107 Acidithiobacillus ferrivorans SS3 11043906 YP_004782665.1 CDS Acife_0099 NC_015942.1 113191 114729 R PFAM: Glucan biosynthesis, periplasmic, MdoG C-terminal; KEGG: afr:AFE_0960 glucan biosynthesis protein D; periplasmic glucan biosynthesis protein MdoG complement(113191..114729) Acidithiobacillus ferrivorans SS3 11041441 YP_004782666.1 CDS Acife_0100 NC_015942.1 115170 115301 D hypothetical protein 115170..115301 Acidithiobacillus ferrivorans SS3 11041442 YP_004782667.1 CDS Acife_0101 NC_015942.1 115292 116113 D PFAM: Signal transduction response regulator, C-terminal; KEGG: afe:Lferr_2550 putative winged helix family two component transcriptional regulator; winged helix family transcriptional regulator 115292..116113 Acidithiobacillus ferrivorans SS3 11043907 YP_004782668.1 CDS Acife_0102 NC_015942.1 116271 116642 D hypothetical protein 116271..116642 Acidithiobacillus ferrivorans SS3 11041443 YP_004782669.1 CDS Acife_0103 NC_015942.1 116662 117351 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: afr:AFE_2273 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 116662..117351 Acidithiobacillus ferrivorans SS3 11041444 YP_004782670.1 CDS Acife_0104 NC_015942.1 117351 117752 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: afr:AFE_2269 biopolymer transport protein, ExbD/TolR family; biopolymer transport protein ExbD/TolR 117351..117752 Acidithiobacillus ferrivorans SS3 11043908 YP_004782671.1 CDS Acife_0105 NC_015942.1 117781 120186 D PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: afr:AFE_2935 TonB-dependent receptor; TonB-dependent receptor 117781..120186 Acidithiobacillus ferrivorans SS3 11041445 YP_004782672.1 CDS Acife_0106 NC_015942.1 120380 122779 D PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: afe:Lferr_2552 TonB-dependent receptor; TonB-dependent receptor 120380..122779 Acidithiobacillus ferrivorans SS3 11041446 YP_004782673.1 CDS Acife_0107 NC_015942.1 123167 123745 D KEGG: afr:AFE_2942 hypothetical protein; hypothetical protein 123167..123745 Acidithiobacillus ferrivorans SS3 11043909 YP_004782674.1 CDS Acife_0108 NC_015942.1 124081 124248 R hypothetical protein complement(124081..124248) Acidithiobacillus ferrivorans SS3 11041447 YP_004782675.1 CDS Acife_0109 NC_015942.1 124453 124617 R hypothetical protein complement(124453..124617) Acidithiobacillus ferrivorans SS3 11041448 YP_004782676.1 CDS Acife_0110 NC_015942.1 124852 127419 R KEGG: afr:AFE_2944 cation transporting P-type ATPase; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; P-type HAD superfamily ATPase complement(124852..127419) Acidithiobacillus ferrivorans SS3 11043910 YP_004782677.1 CDS Acife_0111 NC_015942.1 127472 129412 R TIGRFAM: Exodeoxyribonuclease V, alpha subunit; KEGG: afr:AFE_2933 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha complement(127472..129412) Acidithiobacillus ferrivorans SS3 11041449 YP_004782678.1 CDS Acife_0112 NC_015942.1 129409 133017 R KEGG: afr:AFE_2932 exodeoxyribonuclease V, beta subunit; TIGRFAM: Exodeoxyribonuclease V, beta subunit; PFAM: DNA helicase, UvrD/REP type; exodeoxyribonuclease V subunit beta complement(129409..133017) Acidithiobacillus ferrivorans SS3 11041450 YP_004782679.1 CDS Acife_0113 NC_015942.1 133014 136406 R KEGG: afr:AFE_2931 exodeoxyribonuclease V, gamma subunit; TIGRFAM: Exodeoxyribonuclease V, RecC subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; exodeoxyribonuclease V subunit gamma complement(133014..136406) Acidithiobacillus ferrivorans SS3 11043911 YP_004782680.1 CDS Acife_0114 NC_015942.1 136403 137218 R PFAM: Protein of unknown function DUF2063; KEGG: mep:MPQ_1793 hypothetical protein; hypothetical protein complement(136403..137218) Acidithiobacillus ferrivorans SS3 11041451 YP_004782681.1 CDS Acife_0115 NC_015942.1 137181 138035 R PFAM: Protein of unknown function DUF692; KEGG: tgr:Tgr7_2641 hypothetical protein; hypothetical protein complement(137181..138035) Acidithiobacillus ferrivorans SS3 11041452 YP_004782682.1 CDS Acife_0116 NC_015942.1 138140 138406 R hypothetical protein complement(138140..138406) Acidithiobacillus ferrivorans SS3 11043912 YP_004782683.1 CDS Acife_0117 NC_015942.1 138606 139523 R PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: afr:AFE_0238 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis acyltransferase complement(138606..139523) Acidithiobacillus ferrivorans SS3 11041453 YP_004782684.1 CDS Acife_0118 NC_015942.1 139802 140665 D KEGG: lch:Lcho_1854 transglutaminase domain-containing protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like; transglutaminase domain-containing protein 139802..140665 Acidithiobacillus ferrivorans SS3 11041454 YP_004782685.1 CDS Acife_0119 NC_015942.1 140680 141399 D KEGG: lch:Lcho_1403 hypothetical protein; hypothetical protein 140680..141399 Acidithiobacillus ferrivorans SS3 11043913 YP_004782686.1 CDS Acife_0120 NC_015942.1 141484 142743 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: afr:AFE_2929 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase complement(141484..142743) Acidithiobacillus ferrivorans SS3 11041455 YP_004782687.1 CDS Acife_0121 NC_015942.1 142857 143171 R PFAM: Protein of unknown function DUF190; KEGG: afr:AFE_2927 hypothetical protein; hypothetical protein complement(142857..143171) Acidithiobacillus ferrivorans SS3 11041456 YP_004782688.1 CDS Acife_0122 NC_015942.1 143182 143559 R TIGRFAM: Camphor resistance CrcB protein; HAMAP: CrcB-like protein; KEGG: afr:AFE_2926 CrcB protein, putative; PFAM: Camphor resistance CrcB protein; CrcB-like protein complement(143182..143559) Acidithiobacillus ferrivorans SS3 11043914 YP_004782689.1 CDS Acife_0124 NC_015942.1 144020 145729 R PFAM: Glycosyl transferase, family 39; KEGG: afr:AFE_2925 dolichyl-phosphate-mannose-protein mannosyltransferase family protein; glycosyl transferase family protein complement(144020..145729) Acidithiobacillus ferrivorans SS3 11041458 YP_004782690.1 CDS Acife_0126 NC_015942.1 146169 146393 D KEGG: axy:AXYL_06058 hypothetical protein; hypothetical protein 146169..146393 Acidithiobacillus ferrivorans SS3 11041460 YP_004782691.1 CDS Acife_0127 NC_015942.1 146445 146744 D PFAM: Helix-turn-helix type 3; KEGG: mmw:Mmwyl1_3898 helix-turn-helix domain-containing protein; XRE family transcriptional regulator 146445..146744 Acidithiobacillus ferrivorans SS3 11041461 YP_004782692.1 CDS Acife_0128 NC_015942.1 146887 148290 R PFAM: Glycosyl transferase, group 1; KEGG: bam:Bamb_0758 glycosyl transferase, group 1; group 1 glycosyl transferase complement(146887..148290) Acidithiobacillus ferrivorans SS3 11041462 YP_004782693.1 CDS Acife_0129 NC_015942.1 148287 149114 R KEGG: dte:Dester_1313 methyltransferase type 11; hypothetical protein complement(148287..149114) Acidithiobacillus ferrivorans SS3 11041463 YP_004782694.1 CDS Acife_0130 NC_015942.1 149115 150632 R PFAM: Polysaccharide biosynthesis protein; KEGG: afr:AFE_0076 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(149115..150632) Acidithiobacillus ferrivorans SS3 11043915 YP_004782695.1 CDS Acife_0131 NC_015942.1 150665 150871 D hypothetical protein 150665..150871 Acidithiobacillus ferrivorans SS3 11041464 YP_004782696.1 CDS Acife_0132 NC_015942.1 150853 151431 D KEGG: afr:AFE_0071 peptidoglycan-associated lipoprotein, putative; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; peptidoglycan-associated lipoprotein 150853..151431 Acidithiobacillus ferrivorans SS3 11041465 YP_004782697.1 CDS Acife_0133 NC_015942.1 151452 152255 D KEGG: afr:AFE_0070 hypothetical protein; TIGRFAM: Tol-Pal system, YbgF; PFAM: Tetratricopeptide TPR-1; tol-pal system protein YbgF 151452..152255 Acidithiobacillus ferrivorans SS3 11043916 YP_004782698.1 CDS Acife_0134 NC_015942.1 152255 152899 D PFAM: Radical SAM; KEGG: afr:AFE_0069 radical SAM domain protein; radical SAM domain-containing protein 152255..152899 Acidithiobacillus ferrivorans SS3 11041466 YP_004782699.1 CDS Acife_0135 NC_015942.1 152902 153591 D KEGG: afr:AFE_0068 ExsB protein; TIGRFAM: Exoenzyme S synthesis protein B/queuosine synthesis; PFAM: Queuosine synthesis-like; exsB protein 152902..153591 Acidithiobacillus ferrivorans SS3 11041467 YP_004782700.1 CDS Acife_0136 NC_015942.1 153604 154875 R TIGRFAM: Tol-Pal system beta propeller repeat-containing protein, TolB; HAMAP: Tol-Pal system beta propeller repeat-containing protein, TolB; KEGG: afr:AFE_0067 tol-pal system beta propeller repeat protein TolB; PFAM: TolB, N-terminal; WD40-like Beta Propeller; protein tolB complement(153604..154875) Acidithiobacillus ferrivorans SS3 11041468 YP_004782701.1 CDS Acife_0137 NC_015942.1 154868 155863 R TIGRFAM: Tol-Pal system, TolA; KEGG: afr:AFE_0066 TolA protein; protein TolA complement(154868..155863) Acidithiobacillus ferrivorans SS3 11041469 YP_004782702.1 CDS Acife_0138 NC_015942.1 155860 156270 R KEGG: afr:AFE_0065 TolR protein; TIGRFAM: Biopolymer transport, TolR; PFAM: Biopolymer transport protein ExbD/TolR; protein TolR complement(155860..156270) Acidithiobacillus ferrivorans SS3 11041470 YP_004782703.1 CDS Acife_0139 NC_015942.1 156267 156968 R KEGG: afr:AFE_0064 TolQ protein; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel; protein TolQ complement(156267..156968) Acidithiobacillus ferrivorans SS3 11041471 YP_004782704.1 CDS Acife_0140 NC_015942.1 156975 157397 R KEGG: afr:AFE_0063 tol-pal system-associated acyl-CoA thioesterase; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily; tol-pal system-associated acyl-CoA thioesterase complement(156975..157397) Acidithiobacillus ferrivorans SS3 11041472 YP_004782705.1 CDS Acife_0141 NC_015942.1 157387 158412 R SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: afr:AFE_0062 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; Holliday junction ATP-dependent DNA helicase ruvB complement(157387..158412) Acidithiobacillus ferrivorans SS3 11043917 YP_004782706.1 CDS Acife_0142 NC_015942.1 158452 159033 R TIGRFAM: Bacterial DNA recombination protein RuvA; HAMAP: Holliday junction ATP-dependent DNA helicase ruvA; KEGG: afr:AFE_0061 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal; Holliday junction ATP-dependent DNA helicase ruvA complement(158452..159033) Acidithiobacillus ferrivorans SS3 11041473 YP_004782707.1 CDS Acife_0143 NC_015942.1 159064 159609 R TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; HAMAP: Crossover junction endodeoxyribonuclease RuvC; KEGG: afe:Lferr_0061 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC; Crossover junction endodeoxyribonuclease ruvC complement(159064..159609) Acidithiobacillus ferrivorans SS3 11041474 YP_004782708.1 CDS Acife_0144 NC_015942.1 159644 160396 R TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: afr:AFE_0059 hypothetical protein; PFAM: Protein of unknown function DUF28; hypothetical protein complement(159644..160396) Acidithiobacillus ferrivorans SS3 11043918 YP_004782709.1 CDS Acife_0145 NC_015942.1 160471 161082 R KEGG: afr:AFE_0058 acyltransferase family protein; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(160471..161082) Acidithiobacillus ferrivorans SS3 11041475 YP_004782710.1 CDS Acife_0146 NC_015942.1 161091 162188 R TIGRFAM: Quinolinate synthetase A; HAMAP: Quinolinate synthase A; KEGG: afe:Lferr_0058 quinolinate synthetase; PFAM: Quinolinate synthetase A; quinolinate synthase A complement(161091..162188) Acidithiobacillus ferrivorans SS3 11041476 YP_004782711.1 CDS Acife_0147 NC_015942.1 162274 164064 R KEGG: afr:AFE_0056 aspartyl-tRNA synthetase; TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain; aspartyl-tRNA synthetase complement(162274..164064) Acidithiobacillus ferrivorans SS3 11041477 YP_004782712.1 CDS Acife_0148 NC_015942.1 164148 164408 R KEGG: afr:AFE_0055 hypothetical protein; TIGRFAM: Regulatory protein, FmdB, putative; PFAM: Regulatory protein, FmdB, putative; FmdB family regulatory protein complement(164148..164408) Acidithiobacillus ferrivorans SS3 11041478 YP_004782713.1 CDS Acife_0149 NC_015942.1 164519 165175 D KEGG: afe:Lferr_0055 multiple antibiotic resistance (MarC)-like protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: Multiple antibiotic resistance (MarC)-related; multiple antibiotic resistance (MarC)-like protein 164519..165175 Acidithiobacillus ferrivorans SS3 11041479 YP_004782714.1 CDS Acife_0150 NC_015942.1 165203 165532 R PFAM: Protein of unknown function DUF202; KEGG: hypothetical protein; hypothetical protein complement(165203..165532) Acidithiobacillus ferrivorans SS3 11041480 YP_004782715.1 CDS Acife_0151 NC_015942.1 165956 167623 D TIGRFAM: ATP-binding cassette protein, ChvD family; PFAM: ABC transporter-like; KEGG: afr:AFE_0036 putative ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core; ChvD family ATP-binding cassette protein 165956..167623 Acidithiobacillus ferrivorans SS3 11041481 YP_004782716.1 CDS Acife_0152 NC_015942.1 167774 167908 D TIGRFAM: Ribosomal protein L34; HAMAP: 50S ribosomal protein L34; KEGG: afr:AFE_0035 50S ribosomal protein L34; PFAM: Ribosomal protein L34; 50S ribosomal protein L34 167774..167908 Acidithiobacillus ferrivorans SS3 11041482 YP_004782717.1 CDS Acife_0153 NC_015942.1 167912 168262 D TIGRFAM: Ribonuclease P; HAMAP: Ribonuclease P; KEGG: afr:AFE_0034 ribonuclease P protein component; PFAM: Ribonuclease P; ribonuclease P protein component 167912..168262 Acidithiobacillus ferrivorans SS3 11043919 YP_004782718.1 CDS Acife_0154 NC_015942.1 168259 168474 D TIGRFAM: Protein of unknown function DUF37; HAMAP: Protein of unknown function DUF37; KEGG: afr:AFE_0033 conserved hypothetical protein TIGR00278; PFAM: Protein of unknown function DUF37; hypothetical protein 168259..168474 Acidithiobacillus ferrivorans SS3 11041483 YP_004782719.1 CDS Acife_0155 NC_015942.1 168490 170094 D TIGRFAM: Membrane insertion protein, OxaA/YidC, core; Membrane insertion protein, OxoA/YidC, N-terminal; HAMAP: Membrane protein oxaA; KEGG: afr:AFE_0032 inner membrane protein, 60 kDa; PFAM: Membrane insertion protein, OxaA/YidC; membrane protein oxaA 168490..170094 Acidithiobacillus ferrivorans SS3 11041484 YP_004782720.1 CDS Acife_0156 NC_015942.1 170123 171478 D TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: afr:AFE_0031 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related; tRNA modification GTPase mnmE 170123..171478 Acidithiobacillus ferrivorans SS3 11043920 YP_004782721.1 CDS Acife_0157 NC_015942.1 171588 171788 R KEGG: afr:AFE_0921 hypothetical protein; hypothetical protein complement(171588..171788) Acidithiobacillus ferrivorans SS3 11041485 YP_004782722.1 CDS Acife_0158 NC_015942.1 171799 173169 R KEGG: afr:AFE_0920 metal ion transporter, NRAMP family; NRAMP family metal ion transporter complement(171799..173169) Acidithiobacillus ferrivorans SS3 11041486 YP_004782723.1 CDS Acife_0160 NC_015942.1 173929 174630 R PFAM: Protein of unknown function DUF45; KEGG: mca:MCA1894 hypothetical protein; hypothetical protein complement(173929..174630) Acidithiobacillus ferrivorans SS3 11041487 YP_004782724.1 CDS Acife_0161 NC_015942.1 174636 177878 R TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: mca:MCA1893 type I restriction-modification system, R subunit; SMART: DEAD-like helicase, N-terminal; HsdR family type I site-specific deoxyribonuclease complement(174636..177878) Acidithiobacillus ferrivorans SS3 11041488 YP_004782725.1 CDS Acife_0162 NC_015942.1 178084 178821 R KEGG: hypothetical protein; hypothetical protein complement(178084..178821) Acidithiobacillus ferrivorans SS3 11041489 YP_004782726.1 CDS Acife_0163 NC_015942.1 178818 179987 R PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: Restriction modification system DNA specificity domain protein; restriction modification system DNA specificity domain-containing protein complement(178818..179987) Acidithiobacillus ferrivorans SS3 11041490 YP_004782727.1 CDS Acife_0164 NC_015942.1 179984 181054 R KEGG: dde:Dde_2497 hypothetical protein; hypothetical protein complement(179984..181054) Acidithiobacillus ferrivorans SS3 11043922 YP_004782728.1 CDS Acife_0165 NC_015942.1 181051 182610 R KEGG: mca:MCA1888 type I restriction-modification system, M subunit; TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit; PFAM: DNA methylase, adenine-specific; type I restriction-modification system, M subunit complement(181051..182610) Acidithiobacillus ferrivorans SS3 11041491 YP_004782729.1 CDS Acife_0166 NC_015942.1 182607 183188 R KEGG: mca:MCA1886 hypothetical protein; hypothetical protein complement(182607..183188) Acidithiobacillus ferrivorans SS3 11041492 YP_004782730.1 CDS Acife_0167 NC_015942.1 183704 184480 R KEGG: afr:AFE_3235 ABC-2 type transporter, permease protein, NodJ family; TIGRFAM: ABC-2 type transporter, NodJ; PFAM: ABC-2 type transporter; ABC transporter complement(183704..184480) Acidithiobacillus ferrivorans SS3 11041493 YP_004782731.1 CDS Acife_0168 NC_015942.1 184480 185421 R KEGG: afr:AFE_3236 ABC transporter, ATP-binding protein, NodI family; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter complement(184480..185421) Acidithiobacillus ferrivorans SS3 11043924 YP_004782732.1 CDS Acife_0169 NC_015942.1 185390 186118 R KEGG: afe:Lferr_2838 hypothetical protein; hypothetical protein complement(185390..186118) Acidithiobacillus ferrivorans SS3 11041494 YP_004782733.1 CDS Acife_0170 NC_015942.1 186118 186435 R KEGG: afr:AFE_3238 ferredoxin, putative; ferredoxin complement(186118..186435) Acidithiobacillus ferrivorans SS3 11041495 YP_004782734.1 CDS Acife_0171 NC_015942.1 186508 187134 D KEGG: afr:AFE_3239 COQ7 family protein; COQ7 family protein 186508..187134 Acidithiobacillus ferrivorans SS3 11041496 YP_004782735.1 CDS Acife_0172 NC_015942.1 187139 187624 R KEGG: afr:AFE_3240 Rrf2 family protein; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2; BadM/Rrf2 family transcriptional regulator complement(187139..187624) Acidithiobacillus ferrivorans SS3 11041497 YP_004782736.1 CDS Acife_0173 NC_015942.1 187635 188060 R PFAM: Peroxiredoxin, OsmC-like protein; KEGG: afr:AFE_3241 OsmC/Ohr family protein; OsmC family protein complement(187635..188060) Acidithiobacillus ferrivorans SS3 11041498 YP_004782737.1 CDS Acife_0174 NC_015942.1 188131 188922 R PFAM: Indole-3-glycerol phosphate synthase; KEGG: afr:AFE_3242 indole-3-glycerol phosphate synthase; Indole-3-glycerol phosphate synthase complement(188131..188922) Acidithiobacillus ferrivorans SS3 11041499 YP_004782738.1 CDS Acife_0175 NC_015942.1 188926 189942 R TIGRFAM: Anthranilate phosphoribosyl transferase; HAMAP: Anthranilate phosphoribosyl transferase; KEGG: afr:AFE_3243 anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; anthranilate phosphoribosyltransferase complement(188926..189942) Acidithiobacillus ferrivorans SS3 11041500 YP_004782739.1 CDS Acife_0176 NC_015942.1 189939 190511 R KEGG: afr:AFE_3244 para-aminobenzoate synthase glutamine amidotransferase component II; TIGRFAM: Glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I, C-terminal; glutamine amidotransferase of anthranilate synthase complement(189939..190511) Acidithiobacillus ferrivorans SS3 11043925 YP_004782740.1 CDS Acife_0178 NC_015942.1 190862 192442 R PFAM: ATPase associated with various cellular activities, AAA-4; KEGG: paa:Paes_2367 putative transcriptional regulator; putative transcriptional regulator complement(190862..192442) Acidithiobacillus ferrivorans SS3 11041502 YP_004782741.1 CDS Acife_0180 NC_015942.1 192811 193071 R KEGG: syp:SYNPCC7002_A0406 AbrB family transcriptional regulator; TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; AbrB family transcriptional regulator complement(192811..193071) Acidithiobacillus ferrivorans SS3 11041504 YP_004782742.1 CDS Acife_0181 NC_015942.1 193123 194640 R KEGG: afr:AFE_3245 anthranilate synthase component I; TIGRFAM: Anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; anthranilate synthase component I complement(193123..194640) Acidithiobacillus ferrivorans SS3 11043926 YP_004782743.1 CDS Acife_0182 NC_015942.1 194750 195430 R TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; HAMAP: Phosphoglycolate phosphatase; KEGG: afr:AFE_3246 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; phosphoglycolate phosphatase complement(194750..195430) Acidithiobacillus ferrivorans SS3 11041505 YP_004782744.1 CDS Acife_0183 NC_015942.1 195434 196096 R KEGG: afr:AFE_3247 ribulose-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase complement(195434..196096) Acidithiobacillus ferrivorans SS3 11043927 YP_004782745.1 CDS Acife_0184 NC_015942.1 196161 197231 R KEGG: afr:AFE_3248 fructose-bisphosphate aldolase, class II; TIGRFAM: Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Ketose-bisphosphate aldolase, class-II; PFAM: Ketose-bisphosphate aldolase, class-II; fructose-bisphosphate aldolase, class II, Calvin cycle subtype complement(196161..197231) Acidithiobacillus ferrivorans SS3 11041506 YP_004782746.1 CDS Acife_0185 NC_015942.1 197340 198779 R KEGG: afr:AFE_3249 pyruvate kinase II; TIGRFAM: Pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; pyruvate kinase complement(197340..198779) Acidithiobacillus ferrivorans SS3 11041507 YP_004782747.1 CDS Acife_0186 NC_015942.1 198776 199981 R KEGG: afr:AFE_3250 phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; phosphoglycerate kinase complement(198776..199981) Acidithiobacillus ferrivorans SS3 11043928 YP_004782748.1 CDS Acife_0187 NC_015942.1 199996 201012 R KEGG: afr:AFE_3251 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; glyceraldehyde-3-phosphate dehydrogenase, type I complement(199996..201012) Acidithiobacillus ferrivorans SS3 11041508 YP_004782749.1 CDS Acife_0188 NC_015942.1 201048 203045 R KEGG: afe:Lferr_2853 transketolase; TIGRFAM: Transketolase, bacterial-like; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; transketolase complement(201048..203045) Acidithiobacillus ferrivorans SS3 11043929 YP_004782750.1 CDS Acife_0189 NC_015942.1 203071 204015 R KEGG: afr:AFE_3253 fructose 1,6-bisphosphatase II; TIGRFAM: GlpX; PFAM: GlpX; fructose-1,6-bisphosphatase, class II complement(203071..204015) Acidithiobacillus ferrivorans SS3 11041509 YP_004782751.1 CDS Acife_0190 NC_015942.1 204071 204886 R PFAM: Inositol monophosphatase; KEGG: afr:AFE_3254 inositol monophosphatase family protein; inositol monophosphatase complement(204071..204886) Acidithiobacillus ferrivorans SS3 11041510 YP_004782752.1 CDS Acife_0191 NC_015942.1 204913 205356 R KEGG: afr:AFE_3255 hypothetical protein; hypothetical protein complement(204913..205356) Acidithiobacillus ferrivorans SS3 11041511 YP_004782753.1 CDS Acife_0192 NC_015942.1 205424 206152 D manually curated; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; KEGG: afr:AFE_3257 conserved hypothetical protein TIGR00046; PFAM: Ribosomal RNA small subunit methyltransferase E; ribosomal RNA small subunit methyltransferase E 205424..206152 Acidithiobacillus ferrivorans SS3 11041512 YP_004782754.1 CDS Acife_0193 NC_015942.1 206163 207128 R PFAM: Mg2+ transporter protein, CorA-like; KEGG: mms:mma_0084 Mg2+/Co2+ transporter; Mg2 transporter protein CorA family protein complement(206163..207128) Acidithiobacillus ferrivorans SS3 11043930 YP_004782755.1 CDS Acife_0194 NC_015942.1 207368 208321 D TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: afr:AFE_3258 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 207368..208321 Acidithiobacillus ferrivorans SS3 11041513 YP_004782756.1 CDS Acife_0195 NC_015942.1 208358 209896 R PFAM: RmuC; KEGG: afe:Lferr_2859 hypothetical protein; RmuC-domain-containing protein complement(208358..209896) Acidithiobacillus ferrivorans SS3 11043931 YP_004782757.1 CDS Acife_0196 NC_015942.1 210026 210481 R TIGRFAM: Large-conductance mechanosensitive channel; HAMAP: Large-conductance mechanosensitive channel; KEGG: afr:AFE_3260 large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel; Uncharacterised protein family UPF0547; Large-conductance mechanosensitive channel complement(210026..210481) Acidithiobacillus ferrivorans SS3 11041514 YP_004782758.1 CDS Acife_0197 NC_015942.1 210602 211117 R KEGG: afr:AFE_3261 lipoprotein, putative; lipoprotein complement(210602..211117) Acidithiobacillus ferrivorans SS3 11041515 YP_004782759.1 CDS Acife_0198 NC_015942.1 211201 214284 R PFAM: Acriflavin resistance protein; KEGG: afr:AFE_3262 transporter, AcrB/AcrD/AcrF family; acriflavin resistance protein complement(211201..214284) Acidithiobacillus ferrivorans SS3 11043932 YP_004782760.1 CDS Acife_0199 NC_015942.1 214281 215411 R KEGG: afe:Lferr_2863 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit complement(214281..215411) Acidithiobacillus ferrivorans SS3 11041516 YP_004782761.1 CDS Acife_0200 NC_015942.1 215408 216838 R PFAM: Outer membrane efflux protein; KEGG: afr:AFE_3265 outer membrane efflux protein; outer membrane efflux protein complement(215408..216838) Acidithiobacillus ferrivorans SS3 11043933 YP_004782762.1 CDS Acife_0201 NC_015942.1 217067 217930 D KEGG: amv:ACMV_28260 hypothetical protein; hypothetical protein 217067..217930 Acidithiobacillus ferrivorans SS3 11041517 YP_004782763.1 CDS Acife_0202 NC_015942.1 218378 218776 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: afr:AFE_3172 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 218378..218776 Acidithiobacillus ferrivorans SS3 11041518 YP_004782764.1 CDS Acife_0203 NC_015942.1 218773 219516 D PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_2801 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 218773..219516 Acidithiobacillus ferrivorans SS3 11043934 YP_004782765.1 CDS Acife_0205 NC_015942.1 220080 220505 D PFAM: GCN5-related N-acetyltransferase; KEGG: chl:Chy400_3543 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 220080..220505 Acidithiobacillus ferrivorans SS3 11041520 YP_004782766.1 CDS Acife_0206 NC_015942.1 220812 221219 D KEGG: afr:AFE_2717 hypothetical protein; hypothetical protein 220812..221219 Acidithiobacillus ferrivorans SS3 11043935 YP_004782767.1 CDS Acife_0208 NC_015942.1 221529 221972 R KEGG: afr:AFE_3267 YaiI/YqxD family protein; HAMAP: Protein of unknown function DUF188; PFAM: Protein of unknown function DUF188; hypothetical protein complement(221529..221972) Acidithiobacillus ferrivorans SS3 11043936 YP_004782768.1 CDS Acife_0209 NC_015942.1 222146 222469 D TIGRFAM: Prevent-host-death protein; KEGG: afe:Lferr_2866 prevent-host-death family protein; prevent-host-death family protein 222146..222469 Acidithiobacillus ferrivorans SS3 11041522 YP_004782769.1 CDS Acife_0210 NC_015942.1 222476 222907 D TIGRFAM: Protein of unknown function DUF132; KEGG: afe:Lferr_2867 nucleic acid-binding protein, contains PIN domain; hypothetical protein 222476..222907 Acidithiobacillus ferrivorans SS3 11041523 YP_004782770.1 CDS Acife_0211 NC_015942.1 223148 223816 R KEGG: ttu:TERTU_0138 nickel-dependent hydrogenase, b-type cytochrome subunit; nickel-dependent hydrogenase, b-type cytochrome subunit complement(223148..223816) Acidithiobacillus ferrivorans SS3 11041524 YP_004782771.1 CDS Acife_0212 NC_015942.1 223820 224314 R PFAM: Cytochrome c prime; KEGG: pzu:PHZ_c1138 putative cytochrome c signal peptide protein; cytochrome c prime complement(223820..224314) Acidithiobacillus ferrivorans SS3 11041525 YP_004782772.1 CDS Acife_0215 NC_015942.1 225436 226302 D PFAM: Protein of unknown function DUF6, transmembrane; KEGG: ade:Adeh_2262 hypothetical protein; hypothetical protein 225436..226302 Acidithiobacillus ferrivorans SS3 11041528 YP_004782773.1 CDS Acife_0216 NC_015942.1 226619 227173 D KEGG: afe:Lferr_2871 hypothetical protein; hypothetical protein 226619..227173 Acidithiobacillus ferrivorans SS3 11041529 YP_004782774.1 CDS Acife_0217 NC_015942.1 227174 227920 D KEGG: afr:AFE_3274 transcriptional regulator OmpR, putative; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; two component winged helix family transcriptional regulator 227174..227920 Acidithiobacillus ferrivorans SS3 11041530 YP_004782775.1 CDS Acife_0218 NC_015942.1 227917 229179 D KEGG: afr:AFE_3275 osmolarity sensor protein EnvZ, putative; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; integral membrane sensor signal transduction histidine kinase 227917..229179 Acidithiobacillus ferrivorans SS3 11041531 YP_004782776.1 CDS Acife_0219 NC_015942.1 229190 229528 R KEGG: afr:AFE_3276 hypothetical protein; hypothetical protein complement(229190..229528) Acidithiobacillus ferrivorans SS3 11041532 YP_004782777.1 CDS Acife_0220 NC_015942.1 229668 231056 D TIGRFAM: Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; KEGG: afr:AFE_3277 argininosuccinate lyase; PFAM: Fumarate lyase; argininosuccinate lyase 229668..231056 Acidithiobacillus ferrivorans SS3 11043937 YP_004782778.1 CDS Acife_0221 NC_015942.1 231053 231238 D KEGG: afr:AFE_3278 lipoprotein, putative; lipoprotein 231053..231238 Acidithiobacillus ferrivorans SS3 11041533 YP_004782779.1 CDS Acife_0222 NC_015942.1 231235 232479 D KEGG: afr:AFE_3279 diaminopimelate decarboxylase; TIGRFAM: Diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 231235..232479 Acidithiobacillus ferrivorans SS3 11041534 YP_004782780.1 CDS Acife_0223 NC_015942.1 232686 234311 D KEGG: afr:AFE_2924 glucose-6-phosphate isomerase; HAMAP: Phosphoglucose isomerase (PGI); PFAM: Phosphoglucose isomerase (PGI); glucose-6-phosphate isomerase 232686..234311 Acidithiobacillus ferrivorans SS3 11041535 YP_004782781.1 CDS Acife_0224 NC_015942.1 234456 235625 D PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: afr:AFE_2923 D-alanyl-D-alanine carboxypeptidase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 234456..235625 Acidithiobacillus ferrivorans SS3 11041536 YP_004782782.1 CDS Acife_0225 NC_015942.1 235750 236364 R PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: afr:AFE_2594 glutathione S-transferase; glutathione S-transferase domain-containing protein complement(235750..236364) Acidithiobacillus ferrivorans SS3 11041537 YP_004782783.1 CDS Acife_0226 NC_015942.1 236432 237034 R TIGRFAM: Flavoprotein WrbA; HAMAP: Flavoprotein wrbA; KEGG: afr:AFE_0460 TrpR binding protein WrbA; PFAM: Flavodoxin/nitric oxide synthase; Flavoprotein wrbA complement(236432..237034) Acidithiobacillus ferrivorans SS3 11041538 YP_004782784.1 CDS Acife_0227 NC_015942.1 237119 237496 D PFAM: Helix-turn-helix, HxlR type; KEGG: afr:AFE_0198 transcriptional regulator; HxlR family transcriptional regulator 237119..237496 Acidithiobacillus ferrivorans SS3 11041539 YP_004782785.1 CDS Acife_0228 NC_015942.1 237553 238206 D PFAM: Lipid/polyisoprenoid-binding, YceI-like; KEGG: afr:AFE_0461 YceI-like family protein; YceI family protein 237553..238206 Acidithiobacillus ferrivorans SS3 11043938 YP_004782786.1 CDS Acife_0229 NC_015942.1 238314 238559 R PFAM: Glutaredoxin; KEGG: afr:AFE_2449 hypothetical protein; glutaredoxin complement(238314..238559) Acidithiobacillus ferrivorans SS3 11041540 YP_004782787.1 CDS Acife_0230 NC_015942.1 238581 238787 R PFAM: Heavy metal transport/detoxification protein; KEGG: afr:AFE_1862 heavy metal-binding protein, putative; heavy metal transport/detoxification protein complement(238581..238787) Acidithiobacillus ferrivorans SS3 11041541 YP_004782788.1 CDS Acife_0231 NC_015942.1 238850 239245 R PFAM: Protein of unknown function DUF302; KEGG: afr:AFE_2447 hypothetical protein; hypothetical protein complement(238850..239245) Acidithiobacillus ferrivorans SS3 11041542 YP_004782789.1 CDS Acife_0232 NC_015942.1 239274 241775 R KEGG: hna:Hneap_0924 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; Copper ion-binding; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase complement(239274..241775) Acidithiobacillus ferrivorans SS3 11041543 YP_004782790.1 CDS Acife_0233 NC_015942.1 242256 243503 D PFAM: Ion transport 2; Regulator of K+ conductance, N-terminal; KEGG: afe:Lferr_2537 voltage-gated potassium channel; Ion transport 2 domain-containing protein 242256..243503 Acidithiobacillus ferrivorans SS3 11043939 YP_004782791.1 CDS Acife_0234 NC_015942.1 243500 243808 D KEGG: afe:Lferr_2536 hypothetical protein; hypothetical protein 243500..243808 Acidithiobacillus ferrivorans SS3 11041544 YP_004782792.1 CDS Acife_0235 NC_015942.1 243789 244829 R KEGG: afr:AFE_2921 rare lipoprotein A, putative; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A; rare lipoprotein A complement(243789..244829) Acidithiobacillus ferrivorans SS3 11041545 YP_004782793.1 CDS Acife_0236 NC_015942.1 245135 245509 R PFAM: Rickettsia 17kDa surface antigen; KEGG: afr:AFE_2919 lipoprotein, putative; 17 kDa surface antigen complement(245135..245509) Acidithiobacillus ferrivorans SS3 11041546 YP_004782794.1 CDS Acife_0237 NC_015942.1 245751 246137 D KEGG: afr:AFE_2918 lipoprotein, putative; lipoprotein 245751..246137 Acidithiobacillus ferrivorans SS3 11041547 YP_004782795.1 CDS Acife_0238 NC_015942.1 246263 246976 R PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: afr:AFE_2917 glutamine amidotransferase class-I domain protein; glutamine amidotransferase class-I complement(246263..246976) Acidithiobacillus ferrivorans SS3 11041548 YP_004782796.1 CDS Acife_0239 NC_015942.1 246973 248778 R TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; KEGG: tgr:Tgr7_3175 sensory box protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(246973..248778) Acidithiobacillus ferrivorans SS3 11041549 YP_004782797.1 CDS Acife_0240 NC_015942.1 248912 250339 R KEGG: afo:Afer_1995 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter; ammonium transporter complement(248912..250339) Acidithiobacillus ferrivorans SS3 11041550 YP_004782798.1 CDS Acife_0241 NC_015942.1 250416 251546 R PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: nhl:Nhal_2889 ABC-type phosphate/phosphonate transport system periplasmic component; sulfate transporter/antisigma-factor antagonist STAS complement(250416..251546) Acidithiobacillus ferrivorans SS3 11043940 YP_004782799.1 CDS Acife_0242 NC_015942.1 251533 254082 R TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; PAS fold-4; KEGG: gur:Gura_1513 stage II sporulation E family protein; SMART: Protein phosphatase 2C-related; PAS; putative PAS/PAC sensor protein complement(251533..254082) Acidithiobacillus ferrivorans SS3 11041551 YP_004782800.1 CDS Acife_0243 NC_015942.1 254439 255743 R KEGG: afr:AFE_2916 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter; ammonium transporter complement(254439..255743) Acidithiobacillus ferrivorans SS3 11043941 YP_004782801.1 CDS Acife_0244 NC_015942.1 255799 256137 R PFAM: Nitrogen regulatory protein PII; KEGG: afr:AFE_2915 nitrogen regulatory protein P-II 2; nitrogen regulatory protein P-II complement(255799..256137) Acidithiobacillus ferrivorans SS3 11041552 YP_004782802.1 CDS Acife_0245 NC_015942.1 256192 257370 R KEGG: afr:AFE_2914 hypothetical protein; hypothetical protein complement(256192..257370) Acidithiobacillus ferrivorans SS3 11041553 YP_004782803.1 CDS Acife_0246 NC_015942.1 257552 259027 R PFAM: Sporulation stage V, protein R; KEGG: afr:AFE_2913 SpoVR family protein; SpoVR family protein complement(257552..259027) Acidithiobacillus ferrivorans SS3 11043942 YP_004782804.1 CDS Acife_0247 NC_015942.1 259020 260324 R PFAM: Protein of unknown function DUF444; KEGG: afr:AFE_2912 hypothetical protein; hypothetical protein complement(259020..260324) Acidithiobacillus ferrivorans SS3 11041554 YP_004782805.1 CDS Acife_0248 NC_015942.1 260426 261742 R KEGG: afr:AFE_2911 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter; ammonium transporter complement(260426..261742) Acidithiobacillus ferrivorans SS3 11041555 YP_004782806.1 CDS Acife_0249 NC_015942.1 262027 263961 R KEGG: afr:AFE_2910 hypothetical protein; PFAM: PrkA AAA; PrkA serine kinase; SMART: PrkA AAA; putative serine protein kinase, PrkA complement(262027..263961) Acidithiobacillus ferrivorans SS3 11043943 YP_004782807.1 CDS Acife_0250 NC_015942.1 264366 264545 D hypothetical protein 264366..264545 Acidithiobacillus ferrivorans SS3 11041556 YP_004782808.1 CDS Acife_0251 NC_015942.1 264542 265486 D PFAM: Cache; KEGG: slo:Shew_3768 hypothetical protein; Cache domain-containing protein 264542..265486 Acidithiobacillus ferrivorans SS3 11041557 YP_004782809.1 CDS Acife_0252 NC_015942.1 265518 268880 R KEGG: afr:AFE_2907 transglutaminase-like domain protein; PFAM: Protein of unknown function DUF2126; Bacterial transglutaminase-like, N-terminal; Transglutaminase-like; SMART: Transglutaminase-like; hypothetical protein complement(265518..268880) Acidithiobacillus ferrivorans SS3 11041558 YP_004782810.1 CDS Acife_0253 NC_015942.1 268923 269909 R PFAM: Protein of unknown function DUF403, bacteria; KEGG: afr:AFE_2906 hypothetical protein; hypothetical protein complement(268923..269909) Acidithiobacillus ferrivorans SS3 11043944 YP_004782811.1 CDS Acife_0254 NC_015942.1 269894 271357 R PFAM: Protein of unknown function DUF404, bacteria N-terminal; Protein of unknown function DUF407; KEGG: afr:AFE_2905 hypothetical protein; hypothetical protein complement(269894..271357) Acidithiobacillus ferrivorans SS3 11041559 YP_004782812.1 CDS Acife_0255 NC_015942.1 271660 272406 R PFAM: Proteasome, subunit alpha/beta; KEGG: afr:AFE_2903 hypothetical protein; 20S proteasome subunits A and B complement(271660..272406) Acidithiobacillus ferrivorans SS3 11041560 YP_004782813.1 CDS Acife_0256 NC_015942.1 272716 273801 D KEGG: afr:AFE_2902 nitrogen regulation protein NR(II); PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; nitrogen specific signal transduction histidine kinase NtrB 272716..273801 Acidithiobacillus ferrivorans SS3 11041561 YP_004782814.1 CDS Acife_0257 NC_015942.1 273798 275240 D TIGRFAM: Signal transduction response regulator, nitrogen regulation NR(I); PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; KEGG: afr:AFE_2901 nitrogen regulation protein NR(I); SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; Fis family nitrogen metabolism transcriptional regulator NtrC 273798..275240 Acidithiobacillus ferrivorans SS3 11041562 YP_004782815.1 CDS Acife_0258 NC_015942.1 275295 276260 D KEGG: afr:AFE_2900 hypothetical protein; hypothetical protein 275295..276260 Acidithiobacillus ferrivorans SS3 11041563 YP_004782816.1 CDS Acife_0259 NC_015942.1 276374 277342 D PFAM: Polyprenyl synthetase; KEGG: afr:AFE_2899 octaprenyl-diphosphate synthase; polyprenyl synthetase 276374..277342 Acidithiobacillus ferrivorans SS3 11041564 YP_004782817.1 CDS Acife_0260 NC_015942.1 277755 279815 D PFAM: O-antigen ligase-related; KEGG: afr:AFE_2896 O-antigen polymerase family protein; O-antigen polymerase 277755..279815 Acidithiobacillus ferrivorans SS3 11041566 YP_004782818.1 CDS Acife_0261 NC_015942.1 279853 281607 D PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: afr:AFE_2895 peptidoglycan synthetase FtsI , putative; penicillin-binding protein transpeptidase 279853..281607 Acidithiobacillus ferrivorans SS3 11041567 YP_004782819.1 CDS Acife_0262 NC_015942.1 281604 281915 D KEGG: afe:Lferr_2514 hypothetical protein; hypothetical protein 281604..281915 Acidithiobacillus ferrivorans SS3 11041568 YP_004782820.1 CDS Acife_0263 NC_015942.1 281908 282231 D KEGG: afe:Lferr_2513 hypothetical protein; hypothetical protein 281908..282231 Acidithiobacillus ferrivorans SS3 11043945 YP_004782821.1 CDS Acife_0264 NC_015942.1 282228 284099 R KEGG: afr:AFE_2893 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter complement(282228..284099) Acidithiobacillus ferrivorans SS3 11041569 YP_004782822.1 CDS Acife_0265 NC_015942.1 284198 284548 R KEGG: afr:AFE_2891 hypothetical protein; hypothetical protein complement(284198..284548) Acidithiobacillus ferrivorans SS3 11043946 YP_004782823.1 CDS Acife_0266 NC_015942.1 284727 285632 D KEGG: afr:AFE_2882 uracil-DNA glycosylase family 4 protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like; phage SPO1 DNA polymerase-like protein 284727..285632 Acidithiobacillus ferrivorans SS3 11043947 YP_004782824.1 CDS Acife_0267 NC_015942.1 285712 286413 D PFAM: Lipase, GDSL; KEGG: bsa:Bacsa_0892 alpha-L-fucosidase; G-D-S-L family lipolytic protein 285712..286413 Acidithiobacillus ferrivorans SS3 11041570 YP_004782825.1 CDS Acife_0269 NC_015942.1 286679 287260 R hypothetical protein complement(286679..287260) Acidithiobacillus ferrivorans SS3 11043948 YP_004782826.1 CDS Acife_0270 NC_015942.1 287290 288246 R PFAM: Glycoside hydrolase, family 24; KEGG: xbo:XBJ1_0278 putative rhs accessory genetic element; glycoside hydrolase family protein complement(287290..288246) Acidithiobacillus ferrivorans SS3 11043949 YP_004782827.1 CDS Acife_0271 NC_015942.1 288263 289183 R PFAM: TadE-like; KEGG: reh:H16_A0987 flp pilus assembly protein TadG; TadE family protein complement(288263..289183) Acidithiobacillus ferrivorans SS3 11041572 YP_004782828.1 CDS Acife_0272 NC_015942.1 289173 290888 R PFAM: Type II secretion system protein E; KEGG: hna:Hneap_2309 FHA domain containing protein; type II secretion system protein E complement(289173..290888) Acidithiobacillus ferrivorans SS3 11043950 YP_004782829.1 CDS Acife_0273 NC_015942.1 290900 292255 R PFAM: Type II/III secretion system; KEGG: hna:Hneap_2310 type II and III secretion system protein; type II and III secretion system protein complement(290900..292255) Acidithiobacillus ferrivorans SS3 11041573 YP_004782830.1 CDS Acife_0274 NC_015942.1 292272 293333 R TIGRFAM: Pilus assembly, Flp-type CpaB; KEGG: bph:Bphy_4344 Flp pilus assembly protein CpaB; Flp pilus assembly protein CpaB complement(292272..293333) Acidithiobacillus ferrivorans SS3 11041574 YP_004782831.1 CDS Acife_0275 NC_015942.1 293343 293510 R hypothetical protein complement(293343..293510) Acidithiobacillus ferrivorans SS3 11041575 YP_004782832.1 CDS Acife_0276 NC_015942.1 293522 294196 R KEGG: hna:Hneap_2313 hypothetical protein; hypothetical protein complement(293522..294196) Acidithiobacillus ferrivorans SS3 11041576 YP_004782833.1 CDS Acife_0277 NC_015942.1 294197 294937 R KEGG: swd:Swoo_0753 hypothetical protein; hypothetical protein complement(294197..294937) Acidithiobacillus ferrivorans SS3 11041577 YP_004782834.1 CDS Acife_0278 NC_015942.1 295018 295986 R hypothetical protein complement(295018..295986) Acidithiobacillus ferrivorans SS3 11041578 YP_004782835.1 CDS Acife_0279 NC_015942.1 296003 297634 R KEGG: saz:Sama_0702 hypothetical protein; hypothetical protein complement(296003..297634) Acidithiobacillus ferrivorans SS3 11041579 YP_004782836.1 CDS Acife_0280 NC_015942.1 297728 298006 R KEGG: swd:Swoo_0756 hypothetical protein; hypothetical protein complement(297728..298006) Acidithiobacillus ferrivorans SS3 11041580 YP_004782837.1 CDS Acife_0281 NC_015942.1 298348 299565 R PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: avi:Avi_7144 OmpA family protein; OmpA/MotB domain-containing protein complement(298348..299565) Acidithiobacillus ferrivorans SS3 11041581 YP_004782838.1 CDS Acife_0282 NC_015942.1 299571 300260 R PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; regulatory protein LuxR complement(299571..300260) Acidithiobacillus ferrivorans SS3 11041582 YP_004782839.1 CDS Acife_0283 NC_015942.1 300599 301450 D PFAM: Type II secretion system F domain; KEGG: hna:Hneap_2308 type II secretion system F domain protein; type II secretion system F domain-containing protein 300599..301450 Acidithiobacillus ferrivorans SS3 11041583 YP_004782840.1 CDS Acife_0284 NC_015942.1 301447 302328 D PFAM: Type II secretion system F domain; KEGG: reh:H16_A0985 flp pilus assembly protein TadC; type II secretion system F domain-containing protein 301447..302328 Acidithiobacillus ferrivorans SS3 11041584 YP_004782841.1 CDS Acife_0285 NC_015942.1 302325 302675 D PFAM: Protein of unknown function DUF192; KEGG: afr:AFE_2872 hypothetical protein; hypothetical protein 302325..302675 Acidithiobacillus ferrivorans SS3 11041585 YP_004782842.1 CDS Acife_0286 NC_015942.1 302736 302984 D KEGG: afr:AFE_0414 prevent host death protein; prevent host death protein 302736..302984 Acidithiobacillus ferrivorans SS3 11041586 YP_004782843.1 CDS Acife_0287 NC_015942.1 302987 303367 D KEGG: tmz:Tmz1t_1573 PIN domain protein; PIN domain-containing protein 302987..303367 Acidithiobacillus ferrivorans SS3 11041587 YP_004782844.1 CDS Acife_0289 NC_015942.1 303908 305284 D TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: afr:AFE_2856 signal recognition particle protein; SMART: ATPase, AAA+ type, core; signal recognition particle protein 303908..305284 Acidithiobacillus ferrivorans SS3 11043951 YP_004782845.1 CDS Acife_0290 NC_015942.1 305355 305615 D TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: afr:AFE_2855 30S ribosomal protein S16; PFAM: Ribosomal protein S16; 30S ribosomal protein S16 305355..305615 Acidithiobacillus ferrivorans SS3 11043952 YP_004782846.1 CDS Acife_0291 NC_015942.1 305602 306114 D PFAM: RimM protein; PRC-barrel; manually curated; TIGRFAM: 16S rRNA processing protein RimM; KEGG: afr:AFE_2854 16S rRNA processing protein RimM; HAMAP: 16S rRNA processing protein RimM; ribosome maturation factor rimM 305602..306114 Acidithiobacillus ferrivorans SS3 11041589 YP_004782847.1 CDS Acife_0292 NC_015942.1 306114 306857 D TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: afr:AFE_2853 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N(1)-)-methyltransferase 306114..306857 Acidithiobacillus ferrivorans SS3 11041590 YP_004782848.1 CDS Acife_0293 NC_015942.1 306879 307223 D TIGRFAM: Ribosomal protein L19; HAMAP: Ribosomal protein L19; KEGG: afr:AFE_2852 ribosomal protein L19; PFAM: Ribosomal protein L19; 50S ribosomal protein L19 306879..307223 Acidithiobacillus ferrivorans SS3 11041591 YP_004782849.1 CDS Acife_0294 NC_015942.1 307248 308483 D KEGG: afe:Lferr_2472 hypothetical protein; hypothetical protein 307248..308483 Acidithiobacillus ferrivorans SS3 11041592 YP_004782850.1 CDS Acife_0295 NC_015942.1 308530 309444 D TIGRFAM: Tyrosine recombinase XerD; HAMAP: Tyrosine recombinase xerD; KEGG: afr:AFE_2850 tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; Tyrosine recombinase xerD 308530..309444 Acidithiobacillus ferrivorans SS3 11043953 YP_004782851.1 CDS Acife_0296 NC_015942.1 309571 311088 R TIGRFAM: Peptidase S1C, Do; PFAM: PDZ/DHR/GLGF; Peptidase S1/S6, chymotrypsin/Hap; KEGG: afr:AFE_2849 serine protease, DO/DeqQ family; SMART: PDZ/DHR/GLGF; protease Do complement(309571..311088) Acidithiobacillus ferrivorans SS3 11041593 YP_004782852.1 CDS Acife_0297 NC_015942.1 311228 312097 R KEGG: afr:AFE_2848 thioredoxin, putative; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; thioredoxin complement(311228..312097) Acidithiobacillus ferrivorans SS3 11041594 YP_004782853.1 CDS Acife_0298 NC_015942.1 312212 312766 R KEGG: afe:Lferr_2468 hypothetical protein; hypothetical protein complement(312212..312766) Acidithiobacillus ferrivorans SS3 11043954 YP_004782854.1 CDS Acife_0299 NC_015942.1 312833 315709 R TIGRFAM: Excinuclease ABC, A subunit; HAMAP: UvrABC system protein A; KEGG: afr:AFE_2847 excinuclease ABC, A subunit; PFAM: ABC transporter-like; UvrABC system protein A complement(312833..315709) Acidithiobacillus ferrivorans SS3 11041595 YP_004782855.1 CDS Acife_0300 NC_015942.1 315724 316197 D KEGG: afr:AFE_2845 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding; single-strand binding protein 315724..316197 Acidithiobacillus ferrivorans SS3 11041596 YP_004782856.1 CDS Acife_0301 NC_015942.1 316595 318214 D PFAM: DNA methylase, adenine-specific; KEGG: geb:GM18_2872 adenine-specific DNA-methyltransferase; N-6 DNA methylase 316595..318214 Acidithiobacillus ferrivorans SS3 11041597 YP_004782857.1 CDS Acife_0302 NC_015942.1 318214 319296 D PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: cph:Cpha266_1710 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 318214..319296 Acidithiobacillus ferrivorans SS3 11041598 YP_004782858.1 CDS Acife_0303 NC_015942.1 319289 319897 D KEGG: vvy:VV1821 hypothetical protein; hypothetical protein 319289..319897 Acidithiobacillus ferrivorans SS3 11043955 YP_004782859.1 CDS Acife_0304 NC_015942.1 320027 320635 D KEGG: pca:Pcar_0280 hypothetical protein; hypothetical protein 320027..320635 Acidithiobacillus ferrivorans SS3 11041599 YP_004782860.1 CDS Acife_0305 NC_015942.1 320635 321627 D PFAM: Protein of unknown function DUF1814; KEGG: pca:Pcar_0281 hypothetical protein; hypothetical protein 320635..321627 Acidithiobacillus ferrivorans SS3 11041600 YP_004782861.1 CDS Acife_0306 NC_015942.1 321608 324787 D TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: geb:GM18_2869 type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicase, N-terminal; HsdR family type I site-specific deoxyribonuclease 321608..324787 Acidithiobacillus ferrivorans SS3 11041601 YP_004782862.1 CDS Acife_0307 NC_015942.1 324963 325151 R KEGG: afr:AFE_2844 hypothetical protein; hypothetical protein complement(324963..325151) Acidithiobacillus ferrivorans SS3 11041602 YP_004782863.1 CDS Acife_0308 NC_015942.1 325321 326613 D PFAM: Protein of unknown function DUF445, transmembrane; KEGG: afr:AFE_2843 hypothetical protein; hypothetical protein 325321..326613 Acidithiobacillus ferrivorans SS3 11041603 YP_004782864.1 CDS Acife_0309 NC_015942.1 326619 327467 R TIGRFAM: Glutamate racemase; HAMAP: Glutamate racemase; KEGG: afr:AFE_2842 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase complement(326619..327467) Acidithiobacillus ferrivorans SS3 11043956 YP_004782865.1 CDS Acife_0310 NC_015942.1 327467 328414 R PFAM: ROK; KEGG: afr:AFE_2841 ROK family protein; ROK family protein complement(327467..328414) Acidithiobacillus ferrivorans SS3 11043957 YP_004782866.1 CDS Acife_0311 NC_015942.1 328407 330425 R PFAM: Alpha-amylase/4-alpha-glucanotransferase, prokaryotic; Domain of unknown function DUF1925; Glycoside hydrolase, family 57, core; KEGG: afr:AFE_2840 glycosyl hydrolase, family 57; hypothetical protein complement(328407..330425) Acidithiobacillus ferrivorans SS3 11041604 YP_004782867.1 CDS Acife_0312 NC_015942.1 330426 332129 R PFAM: Glycoside hydrolase, family 57, core; KEGG: afr:AFE_2839 glycosyl hydrolase, family 57; glycoside hydrolase family protein complement(330426..332129) Acidithiobacillus ferrivorans SS3 11043958 YP_004782868.1 CDS Acife_0313 NC_015942.1 332134 333441 R TIGRFAM: Glucose-1-phosphate adenylyltransferase; HAMAP: Glucose-1-phosphate adenylyltransferase; KEGG: afr:AFE_2838 glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate adenylyltransferase complement(332134..333441) Acidithiobacillus ferrivorans SS3 11041605 YP_004782869.1 CDS Acife_0314 NC_015942.1 333681 335888 D SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM: 1,4-alpha-glucan branching enzyme, core region; KEGG: afe:Lferr_2458 1,4-alpha-glucan branching protein; HAMAP: 1,4-alpha-glucan branching enzyme, core region; PFAM: Alpha-amylase, C-terminal all beta; Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; 1,4-alpha-glucan-branching protein 333681..335888 Acidithiobacillus ferrivorans SS3 11041606 YP_004782870.1 CDS Acife_0315 NC_015942.1 335885 336364 D KEGG: afr:AFE_2835 hypothetical protein; hypothetical protein 335885..336364 Acidithiobacillus ferrivorans SS3 11041607 YP_004782871.1 CDS Acife_0316 NC_015942.1 336340 337269 D KEGG: afr:AFE_2834 SPFH/band 7 domain protein; PFAM: Band 7 protein; SMART: Band 7 protein; hypothetical protein 336340..337269 Acidithiobacillus ferrivorans SS3 11043959 YP_004782872.1 CDS Acife_0317 NC_015942.1 337344 338054 R TIGRFAM: 6-phosphogluconolactonase; KEGG: afr:AFE_2833 6-phosphogluconolactonase; 6-phosphogluconolactonase complement(337344..338054) Acidithiobacillus ferrivorans SS3 11041608 YP_004782873.1 CDS Acife_0318 NC_015942.1 338140 339078 D KEGG: afr:AFE_2832 cysteine synthase B; TIGRFAM: Cysteine synthase K/M; Cysteine synthase B; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; cysteine synthase 338140..339078 Acidithiobacillus ferrivorans SS3 11041609 YP_004782874.1 CDS Acife_0319 NC_015942.1 339086 341146 D KEGG: afe:Lferr_2453 hypothetical protein; hypothetical protein 339086..341146 Acidithiobacillus ferrivorans SS3 11041610 YP_004782875.1 CDS Acife_0320 NC_015942.1 341151 341834 D KEGG: afe:Lferr_2452 hypothetical protein; hypothetical protein 341151..341834 Acidithiobacillus ferrivorans SS3 11041611 YP_004782876.1 CDS Acife_0321 NC_015942.1 341819 342652 D PFAM: 3'-5' exonuclease, PolB-like; KEGG: afe:Lferr_2451 hypothetical protein; 3'-5' exonuclease, PolB-like protein 341819..342652 Acidithiobacillus ferrivorans SS3 11041612 YP_004782877.1 CDS Acife_0322 NC_015942.1 342627 343949 D TIGRFAM: 23S rRNA methyltransferase/RumA; HAMAP: 23S rRNA (uracil-5-)-methyltransferase rumA; KEGG: afr:AFE_2828 23S rRNA (uracil-5-)-methyltransferase; PFAM: Methyltransferase type 11; Deoxyribonuclease/rho motif-related TRAM; 23S rRNA (uracil-5-)-methyltransferase RumA 342627..343949 Acidithiobacillus ferrivorans SS3 11041613 YP_004782878.1 CDS Acife_0323 NC_015942.1 343951 344469 D PFAM: YkuD domain; KEGG: afr:AFE_2827 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 343951..344469 Acidithiobacillus ferrivorans SS3 11043960 YP_004782879.1 CDS Acife_0324 NC_015942.1 344470 346599 D KEGG: afr:AFE_2826 hypothetical protein; hypothetical protein 344470..346599 Acidithiobacillus ferrivorans SS3 11041614 YP_004782880.1 CDS Acife_0325 NC_015942.1 346583 347647 D PFAM: Glycoside hydrolase, family 3, N-terminal; KEGG: afr:AFE_2825 beta-hexosaminidase; glycoside hydrolase family protein 346583..347647 Acidithiobacillus ferrivorans SS3 11041615 YP_004782881.1 CDS Acife_0326 NC_015942.1 347772 348176 D TIGRFAM: Ribosomal protein S6; HAMAP: Ribosomal protein S6, bacterial-like; KEGG: afr:AFE_2824 30S ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; 30S ribosomal protein S6 347772..348176 Acidithiobacillus ferrivorans SS3 11041616 YP_004782882.1 CDS Acife_0327 NC_015942.1 348192 348470 D TIGRFAM: Ribosomal protein S18; HAMAP: 30S ribosomal protein S18; KEGG: afr:AFE_2823 ribosomal protein S18; PFAM: Ribosomal protein S18; 30S ribosomal protein S18 348192..348470 Acidithiobacillus ferrivorans SS3 11041617 YP_004782883.1 CDS Acife_0328 NC_015942.1 348486 349403 D PFAM: Protein of unknown function DUF2232, membrane; KEGG: afe:Lferr_2444 hypothetical protein; hypothetical protein 348486..349403 Acidithiobacillus ferrivorans SS3 11041618 YP_004782884.1 CDS Acife_0329 NC_015942.1 349441 349887 D TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; HAMAP: Ribosomal protein L9, bacteria/chloroplast; KEGG: afr:AFE_2820 50S ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal; Ribosomal protein L9, C-terminal; 50S ribosomal protein L9 349441..349887 Acidithiobacillus ferrivorans SS3 11041619 YP_004782885.1 CDS Acife_0330 NC_015942.1 349913 351286 D TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: afr:AFE_2819 replicative DNA helicase; SMART: ATPase, AAA+ type, core; replicative DNA helicase 349913..351286 Acidithiobacillus ferrivorans SS3 11043961 YP_004782886.1 CDS Acife_0331 NC_015942.1 351349 352443 D TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: afr:AFE_2818 alanine racemase; PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; alanine racemase 351349..352443 Acidithiobacillus ferrivorans SS3 11043962 YP_004782887.1 CDS Acife_0332 NC_015942.1 352440 353798 D KEGG: afr:AFE_2817 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase, AAA+ type, core; DNA repair protein RadA 352440..353798 Acidithiobacillus ferrivorans SS3 11041620 YP_004782888.1 CDS Acife_0333 NC_015942.1 353970 354407 D KEGG: afr:AFE_2816 hypothetical protein; hypothetical protein 353970..354407 Acidithiobacillus ferrivorans SS3 11041621 YP_004782889.1 CDS Acife_0334 NC_015942.1 354571 355914 D PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; KEGG: afr:AFE_2815 Xaa-Pro aminopeptidase; peptidase M24 354571..355914 Acidithiobacillus ferrivorans SS3 11041622 YP_004782890.1 CDS Acife_0335 NC_015942.1 355944 356516 R KEGG: afe:Lferr_2437 hypothetical protein; hypothetical protein complement(355944..356516) Acidithiobacillus ferrivorans SS3 11041623 YP_004782891.1 CDS Acife_0336 NC_015942.1 356920 357225 D KEGG: afr:AFE_2811 lipoprotein, putative; lipoprotein 356920..357225 Acidithiobacillus ferrivorans SS3 11043963 YP_004782892.1 CDS Acife_0337 NC_015942.1 357347 359791 R KEGG: afr:AFE_2053 putative phosphoketolase; HAMAP: phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal; phosphoketolase complement(357347..359791) Acidithiobacillus ferrivorans SS3 11041624 YP_004782893.1 CDS Acife_0338 NC_015942.1 359892 360224 R manually curated; KEGG: afe:Lferr_0218 hypothetical protein; hypothetical protein complement(359892..360224) Acidithiobacillus ferrivorans SS3 11041625 YP_004782894.1 CDS Acife_0339 NC_015942.1 360262 360681 R PFAM: Protein of unknown function DUF2078, membrane; KEGG: afe:Lferr_0219 hypothetical protein; hypothetical protein complement(360262..360681) Acidithiobacillus ferrivorans SS3 11041626 YP_004782895.1 CDS Acife_0341 NC_015942.1 361379 361708 D KEGG: afr:AFE_1709 ISAfe4, tranposase orf1; ISAfe4, tranposase orf1 361379..361708 Acidithiobacillus ferrivorans SS3 11041628 YP_004782896.1 CDS Acife_0342 NC_015942.1 361699 361989 D PFAM: Transposase (putative), IS66 Orf2 like; KEGG: afr:AFE_2938 ISAfe4, transposase orf2; IS66 Orf2 family protein 361699..361989 Acidithiobacillus ferrivorans SS3 11041629 YP_004782897.1 CDS Acife_0343 NC_015942.1 362190 362819 R PFAM: Integrase, catalytic core, phage; KEGG: gca:Galf_2491 integrase family protein; integrase family protein complement(362190..362819) Acidithiobacillus ferrivorans SS3 11041630 YP_004782898.1 CDS Acife_0344 NC_015942.1 363060 363344 D hypothetical protein 363060..363344 Acidithiobacillus ferrivorans SS3 11041631 YP_004782899.1 CDS Acife_0345 NC_015942.1 363417 363956 D KEGG: tde:TDE0384 hypothetical protein; hypothetical protein 363417..363956 Acidithiobacillus ferrivorans SS3 11043964 YP_004782900.1 CDS Acife_0346 NC_015942.1 363989 364432 D KEGG: bac:BamMC406_6709 hypothetical protein; hypothetical protein 363989..364432 Acidithiobacillus ferrivorans SS3 11041632 YP_004782901.1 CDS Acife_0347 NC_015942.1 364715 365119 R hypothetical protein complement(364715..365119) Acidithiobacillus ferrivorans SS3 11041633 YP_004782902.1 CDS Acife_0348 NC_015942.1 365112 365372 R manually curated; KEGG: hypothetical protein; hypothetical protein complement(365112..365372) Acidithiobacillus ferrivorans SS3 11041634 YP_004782903.1 CDS Acife_0349 NC_015942.1 365632 366360 R hypothetical protein complement(365632..366360) Acidithiobacillus ferrivorans SS3 11041635 YP_004782904.1 CDS Acife_0350 NC_015942.1 366436 366927 R hypothetical protein complement(366436..366927) Acidithiobacillus ferrivorans SS3 11043965 YP_004782905.1 CDS Acife_0351 NC_015942.1 367333 367731 R PFAM: Integrase, N-terminal SAM-like, phage; KEGG: pol:Bpro_4806 phage integrase; integrase domain-containing protein SAM domain-containing protein complement(367333..367731) Acidithiobacillus ferrivorans SS3 11043966 YP_004782906.1 CDS Acife_0352 NC_015942.1 368096 368602 R hypothetical protein complement(368096..368602) Acidithiobacillus ferrivorans SS3 11041636 YP_004782907.1 CDS Acife_0353 NC_015942.1 368599 369690 R PFAM: Protein of unknown function DUF262; KEGG: dly:Dehly_0806 hypothetical protein; hypothetical protein complement(368599..369690) Acidithiobacillus ferrivorans SS3 11041637 YP_004782908.1 CDS Acife_0354 NC_015942.1 370045 370770 R PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Protein of unknown function DUF2470; KEGG: tin:Tint_2978 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; FMN-binding pyridoxamine 5'-phosphate oxidase-like protein complement(370045..370770) Acidithiobacillus ferrivorans SS3 11041638 YP_004782909.1 CDS Acife_0355 NC_015942.1 371356 371919 R PFAM: Mechanosensitive ion channel MscS; KEGG: afr:AFE_1549 hypothetical protein; mechanosensitive ion channel MscS complement(371356..371919) Acidithiobacillus ferrivorans SS3 11041639 YP_004782910.1 CDS Acife_0357 NC_015942.1 372709 373437 D PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: tin:Tint_2798 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 372709..373437 Acidithiobacillus ferrivorans SS3 11043968 YP_004782911.1 CDS Acife_0358 NC_015942.1 373461 374198 D KEGG: afr:AFE_1582 hypothetical protein; hypothetical protein 373461..374198 Acidithiobacillus ferrivorans SS3 11041640 YP_004782912.1 CDS Acife_0359 NC_015942.1 374241 374750 R KEGG: afr:AFE_0905 integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein complement(374241..374750) Acidithiobacillus ferrivorans SS3 11043969 YP_004782913.1 CDS Acife_0360 NC_015942.1 374851 375084 R hypothetical protein complement(374851..375084) Acidithiobacillus ferrivorans SS3 11041641 YP_004782914.1 CDS Acife_0362 NC_015942.1 375716 375988 D hypothetical protein 375716..375988 Acidithiobacillus ferrivorans SS3 11041643 YP_004782915.1 CDS Acife_0363 NC_015942.1 375988 376677 D KEGG: hypothetical protein; hypothetical protein 375988..376677 Acidithiobacillus ferrivorans SS3 11041644 YP_004782916.1 CDS Acife_0365 NC_015942.1 377262 377657 R hypothetical protein complement(377262..377657) Acidithiobacillus ferrivorans SS3 11043971 YP_004782917.1 CDS Acife_0366 NC_015942.1 378645 383939 D KEGG: gpb:HDN1F_07060 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Protein of unknown function DUF1998; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; DEAD/DEAH box helicase domain-containing protein 378645..383939 Acidithiobacillus ferrivorans SS3 11041645 YP_004782918.1 CDS Acife_0367 NC_015942.1 383936 386713 D KEGG: gpb:HDN1F_07070 superfamily II DNA/RNA helicases, SNF2 family; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; helicase domain-containing protein 383936..386713 Acidithiobacillus ferrivorans SS3 11041646 YP_004782919.1 CDS Acife_0368 NC_015942.1 386753 386974 D KEGG: afr:AFE_0085 prevent-host-death family protein; prevent-host-death family protein 386753..386974 Acidithiobacillus ferrivorans SS3 11041647 YP_004782920.1 CDS Acife_0369 NC_015942.1 386974 387387 D KEGG: afr:AFE_0086 hypothetical protein; hypothetical protein 386974..387387 Acidithiobacillus ferrivorans SS3 11041648 YP_004782921.1 CDS Acife_0370 NC_015942.1 387384 391403 D KEGG: gpb:HDN1F_07090 hypothetical protein; hypothetical protein 387384..391403 Acidithiobacillus ferrivorans SS3 11043972 YP_004782922.1 CDS Acife_0371 NC_015942.1 391400 391831 D KEGG: mar:MAE_15010 hypothetical protein; hypothetical protein 391400..391831 Acidithiobacillus ferrivorans SS3 11041649 YP_004782923.1 CDS Acife_0372 NC_015942.1 391828 394590 D KEGG: syn:sll1563 hypothetical protein; hypothetical protein 391828..394590 Acidithiobacillus ferrivorans SS3 11041650 YP_004782924.1 CDS Acife_0373 NC_015942.1 394604 395227 D KEGG: nit:NAL212_1258 RNA ligase domain, REL/Rln2; RNA ligase domain, REL/Rln2 394604..395227 Acidithiobacillus ferrivorans SS3 11041651 YP_004782925.1 CDS Acife_0374 NC_015942.1 395430 395705 D PFAM: Plasmid maintenance system killer; KEGG: afr:AFE_0088 plasmid maintenance system killer protein; plasmid maintenance system killer 395430..395705 Acidithiobacillus ferrivorans SS3 11041652 YP_004782926.1 CDS Acife_0375 NC_015942.1 395722 396039 D TIGRFAM: Addiction module antidote protein, HigA; KEGG: afr:AFE_0089 DNA-binding protein, putative; XRE family transcriptional regulator 395722..396039 Acidithiobacillus ferrivorans SS3 11041653 YP_004782927.1 CDS Acife_0376 NC_015942.1 396074 396856 D KEGG: nit:NAL212_1257 hypothetical protein; hypothetical protein 396074..396856 Acidithiobacillus ferrivorans SS3 11041654 YP_004782928.1 CDS Acife_0377 NC_015942.1 397325 397534 D hypothetical protein 397325..397534 Acidithiobacillus ferrivorans SS3 11041655 YP_004782929.1 CDS Acife_0378 NC_015942.1 397834 398730 R PFAM: Protein of unknown function DUF6, transmembrane; KEGG: dde:Dde_1146 hypothetical protein; hypothetical protein complement(397834..398730) Acidithiobacillus ferrivorans SS3 11043973 YP_004782930.1 CDS Acife_0379 NC_015942.1 398723 399313 R PFAM: DinB; KEGG: tin:Tint_2723 DinB family protein; DinB family protein complement(398723..399313) Acidithiobacillus ferrivorans SS3 11043974 YP_004782931.1 CDS Acife_0380 NC_015942.1 399673 399882 R KEGG: afe:Lferr_0197 hypothetical protein; hypothetical protein complement(399673..399882) Acidithiobacillus ferrivorans SS3 11041656 YP_004782932.1 CDS Acife_0381 NC_015942.1 399879 400292 R KEGG: afe:Lferr_0198 hypothetical protein; hypothetical protein complement(399879..400292) Acidithiobacillus ferrivorans SS3 11041657 YP_004782933.1 CDS Acife_0382 NC_015942.1 400847 402043 R PFAM: Major facilitator superfamily MFS-1; KEGG: sil:SPO3481 hypothetical protein; major facilitator superfamily protein complement(400847..402043) Acidithiobacillus ferrivorans SS3 11041658 YP_004782934.1 CDS Acife_0383 NC_015942.1 402117 402584 R PFAM: Protein of unknown function DUF1348; KEGG: aba:Acid345_2217 hypothetical protein; hypothetical protein complement(402117..402584) Acidithiobacillus ferrivorans SS3 11041659 YP_004782935.1 CDS Acife_0384 NC_015942.1 402782 403288 D PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pol:Bpro_2654 TetR family transcriptional regulator; TetR family transcriptional regulator 402782..403288 Acidithiobacillus ferrivorans SS3 11043975 YP_004782936.1 CDS Acife_0386 NC_015942.1 403611 405089 R KEGG: afr:AFE_2799 transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II; PFAM: AlkA, N-terminal; Ada DNA repair, metal-binding; Helix-turn-helix, AraC type; HhH-GPD domain; SMART: Helix-turn-helix, AraC domain; HhH-GPD domain; AraC family transcriptional regulator complement(403611..405089) Acidithiobacillus ferrivorans SS3 11041660 YP_004782937.1 CDS Acife_0387 NC_015942.1 405265 405402 D hypothetical protein 405265..405402 Acidithiobacillus ferrivorans SS3 11041661 YP_004782938.1 CDS Acife_0389 NC_015942.1 405591 406004 R KEGG: afr:AFE_2797 hypothetical protein; hypothetical protein complement(405591..406004) Acidithiobacillus ferrivorans SS3 11041663 YP_004782939.1 CDS Acife_0390 NC_015942.1 406114 406794 D SMART: HTH transcriptional regulator, ArsR; KEGG: afr:AFE_2796 transcriptional regulator, ArsR family; regulatory protein ArsR 406114..406794 Acidithiobacillus ferrivorans SS3 11043977 YP_004782940.1 CDS Acife_0391 NC_015942.1 406983 407600 D manually curated; KEGG: bbt:BBta_p0031 hypothetical protein; hypothetical protein 406983..407600 Acidithiobacillus ferrivorans SS3 11043978 YP_004782941.1 CDS Acife_0392 NC_015942.1 407672 408373 R KEGG: afe:Lferr_0254 TIR (toll-interleukin 1-resistance) domain-containing protein-like protein; hypothetical protein complement(407672..408373) Acidithiobacillus ferrivorans SS3 11041664 YP_004782942.1 CDS Acife_0393 NC_015942.1 408569 408904 R hypothetical protein complement(408569..408904) Acidithiobacillus ferrivorans SS3 11041665 YP_004782943.1 CDS Acife_0394 NC_015942.1 408971 409969 R hypothetical protein complement(408971..409969) Acidithiobacillus ferrivorans SS3 11041666 YP_004782944.1 CDS Acife_0395 NC_015942.1 410056 410343 D PFAM: Transposase IS3/IS911; KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 410056..410343 Acidithiobacillus ferrivorans SS3 11041667 YP_004782945.1 CDS Acife_0396 NC_015942.1 410340 411224 D KEGG: pna:Pnap_0429 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core; integrase catalytic subunit 410340..411224 Acidithiobacillus ferrivorans SS3 11041668 YP_004782946.1 CDS Acife_0397 NC_015942.1 411440 411589 R hypothetical protein complement(411440..411589) Acidithiobacillus ferrivorans SS3 11041669 YP_004782947.1 CDS Acife_0398 NC_015942.1 412124 413035 D PFAM: Restriction endonuclease, type IV-like, Mrr; DNA topoisomerase, type IA, zn finger; KEGG: afr:AFE_2769 restriction endonuclease, putative; restriction endonuclease 412124..413035 Acidithiobacillus ferrivorans SS3 11041670 YP_004782948.1 CDS Acife_0400 NC_015942.1 413236 413364 D hypothetical protein 413236..413364 Acidithiobacillus ferrivorans SS3 11041671 YP_004782949.1 CDS Acife_0401 NC_015942.1 413373 413996 R KEGG: slt:Slit_1749 hypothetical protein; hypothetical protein complement(413373..413996) Acidithiobacillus ferrivorans SS3 11041672 YP_004782950.1 CDS Acife_0402 NC_015942.1 414671 415765 R PFAM: Integrase, catalytic core, phage; KEGG: ppw:PputW619_3971 integrase family protein; integrase family protein complement(414671..415765) Acidithiobacillus ferrivorans SS3 11041673 YP_004782951.1 CDS Acife_0403 NC_015942.1 415994 417001 R PFAM: Integrase, catalytic core, phage; KEGG: nhl:Nhal_0956 integrase family protein; integrase family protein complement(415994..417001) Acidithiobacillus ferrivorans SS3 11041674 YP_004782952.1 CDS Acife_0404 NC_015942.1 416994 417224 R hypothetical protein complement(416994..417224) Acidithiobacillus ferrivorans SS3 11043980 YP_004782953.1 CDS Acife_0405 NC_015942.1 417377 417481 R hypothetical protein complement(417377..417481) Acidithiobacillus ferrivorans SS3 11043981 YP_004782954.1 CDS Acife_0406 NC_015942.1 417474 417743 R KEGG: afr:AFE_0865 hypothetical protein; hypothetical protein complement(417474..417743) Acidithiobacillus ferrivorans SS3 11041675 YP_004782955.1 CDS Acife_0407 NC_015942.1 417797 419284 R hypothetical protein complement(417797..419284) Acidithiobacillus ferrivorans SS3 11041676 YP_004782956.1 CDS Acife_0408 NC_015942.1 419284 419469 R hypothetical protein complement(419284..419469) Acidithiobacillus ferrivorans SS3 11043982 YP_004782957.1 CDS Acife_0410 NC_015942.1 419676 419903 R hypothetical protein complement(419676..419903) Acidithiobacillus ferrivorans SS3 11041677 YP_004782958.1 CDS Acife_0411 NC_015942.1 420046 421002 R KEGG: vpe:Varpa_2758 hypothetical protein; hypothetical protein complement(420046..421002) Acidithiobacillus ferrivorans SS3 11041678 YP_004782959.1 CDS Acife_0412 NC_015942.1 421448 421876 R KEGG: axy:AXYL_02046 helix-turn-helix family protein 5; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein complement(421448..421876) Acidithiobacillus ferrivorans SS3 11041679 YP_004782960.1 CDS Acife_0414 NC_015942.1 422545 422958 R KEGG: app:CAP2UW1_0226 XRE family transcriptional regulator; TIGRFAM: putative zinc finger/helix-turn-helix protein, YgiT family; SMART: Helix-turn-helix type 3; putative zinc finger/helix-turn-helix protein, YgiT family complement(422545..422958) Acidithiobacillus ferrivorans SS3 11043984 YP_004782961.1 CDS Acife_0415 NC_015942.1 422960 423262 R KEGG: app:CAP2UW1_0225 hypothetical protein; hypothetical protein complement(422960..423262) Acidithiobacillus ferrivorans SS3 11041681 YP_004782962.1 CDS Acife_0416 NC_015942.1 423394 423825 D hypothetical protein 423394..423825 Acidithiobacillus ferrivorans SS3 11041682 YP_004782963.1 CDS Acife_0417 NC_015942.1 423830 424123 D PFAM: Protein of unknown function DUF1376; hypothetical protein 423830..424123 Acidithiobacillus ferrivorans SS3 11041683 YP_004782964.1 CDS Acife_0418 NC_015942.1 424110 424331 D hypothetical protein 424110..424331 Acidithiobacillus ferrivorans SS3 11041684 YP_004782965.1 CDS Acife_0419 NC_015942.1 424334 425332 D KEGG: brh:RBRH_01223 replication protein 15; hypothetical protein 424334..425332 Acidithiobacillus ferrivorans SS3 11043985 YP_004782966.1 CDS Acife_0420 NC_015942.1 425344 426183 D KEGG: afr:AFE_1566 DNA replication protein DnaC, putative; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 425344..426183 Acidithiobacillus ferrivorans SS3 11041685 YP_004782967.1 CDS Acife_0421 NC_015942.1 426180 426650 D hypothetical protein 426180..426650 Acidithiobacillus ferrivorans SS3 11041686 YP_004782968.1 CDS Acife_0422 NC_015942.1 426654 427121 D PFAM: Lytic transglycosylase-like, catalytic; KEGG: gox:GOX2634 conjugal transfer protein TrbN; lytic transglycosylase 426654..427121 Acidithiobacillus ferrivorans SS3 11041687 YP_004782969.1 CDS Acife_0423 NC_015942.1 427118 427741 D KEGG: lpa:lpa_00690 IcmL (DotI); IcmL (DotI) 427118..427741 Acidithiobacillus ferrivorans SS3 11041688 YP_004782970.1 CDS Acife_0424 NC_015942.1 427754 428854 D KEGG: cbd:CBUD_0370 IcmK; hypothetical protein 427754..428854 Acidithiobacillus ferrivorans SS3 11041689 YP_004782971.1 CDS Acife_0425 NC_015942.1 428844 430070 D PFAM: Bacterial conjugation TrbI-like protein; KEGG: lpn:lpg0451 IcmE (DotG); conjugation TrbI family protein 428844..430070 Acidithiobacillus ferrivorans SS3 11041690 YP_004782972.1 CDS Acife_0426 NC_015942.1 430081 430638 D TIGRFAM: RNA polymerase sigma-70; sigma-70 family RNA polymerase sigma factor 430081..430638 Acidithiobacillus ferrivorans SS3 11043986 YP_004782973.1 CDS Acife_0427 NC_015942.1 430719 431330 D KEGG: bvi:Bcep1808_7573 hypothetical protein; hypothetical protein 430719..431330 Acidithiobacillus ferrivorans SS3 11043987 YP_004782974.1 CDS Acife_0428 NC_015942.1 431346 431855 D KEGG: lpa:lpa_00698 hypothetical protein; hypothetical protein 431346..431855 Acidithiobacillus ferrivorans SS3 11041691 YP_004782975.1 CDS Acife_0429 NC_015942.1 431965 432186 D PFAM: Protein of unknown function DUF433; KEGG: slt:Slit_0677 hypothetical protein; hypothetical protein 431965..432186 Acidithiobacillus ferrivorans SS3 11041692 YP_004782976.1 CDS Acife_0430 NC_015942.1 432186 432518 D KEGG: slt:Slit_0676 hypothetical protein; hypothetical protein 432186..432518 Acidithiobacillus ferrivorans SS3 11041693 YP_004782977.1 CDS Acife_0433 NC_015942.1 434146 434547 D KEGG: rme:Rmet_3350 hypothetical protein; hypothetical protein 434146..434547 Acidithiobacillus ferrivorans SS3 11041696 YP_004782978.1 CDS Acife_0434 NC_015942.1 434620 436137 D KEGG: mfa:Mfla_2624 hypothetical protein; hypothetical protein 434620..436137 Acidithiobacillus ferrivorans SS3 11043988 YP_004782979.1 CDS Acife_0435 NC_015942.1 436377 439085 D SMART: ATPase, AAA+ type, core; KEGG: gsu:GSU0763 helicase; AAA ATPase 436377..439085 Acidithiobacillus ferrivorans SS3 11041697 YP_004782980.1 CDS Acife_0436 NC_015942.1 439875 440333 D hypothetical protein 439875..440333 Acidithiobacillus ferrivorans SS3 11041698 YP_004782981.1 CDS Acife_0437 NC_015942.1 440343 443339 D KEGG: mea:Mex_2p0509 hypothetical protein; hypothetical protein 440343..443339 Acidithiobacillus ferrivorans SS3 11041699 YP_004782982.1 CDS Acife_0438 NC_015942.1 443414 446083 D PFAM: Domain of unknown function DUF1738; KEGG: afe:Lferr_0235 hypothetical protein; hypothetical protein 443414..446083 Acidithiobacillus ferrivorans SS3 11041700 YP_004782983.1 CDS Acife_0439 NC_015942.1 446165 446779 D hypothetical protein 446165..446779 Acidithiobacillus ferrivorans SS3 11043989 YP_004782984.1 CDS Acife_0440 NC_015942.1 446776 447321 D hypothetical protein 446776..447321 Acidithiobacillus ferrivorans SS3 11041701 YP_004782985.1 CDS Acife_0441 NC_015942.1 447308 448405 D KEGG: cbs:COXBURSA331_A1817 IcmP protein; hypothetical protein 447308..448405 Acidithiobacillus ferrivorans SS3 11041702 YP_004782986.1 CDS Acife_0442 NC_015942.1 448402 450555 D KEGG: mpt:Mpe_B0057 hypothetical protein; hypothetical protein 448402..450555 Acidithiobacillus ferrivorans SS3 11041703 YP_004782987.1 CDS Acife_0443 NC_015942.1 450753 451751 D KEGG: tkm:TK90_0873 transcriptional regulator, LysR family; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; LysR family transcriptional regulator 450753..451751 Acidithiobacillus ferrivorans SS3 11041704 YP_004782988.1 CDS Acife_0444 NC_015942.1 451907 453601 D PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; KEGG: hna:Hneap_0212 NADH dehydrogenase (quinone); NADH/Ubiquinone/plastoquinone (complex I) 451907..453601 Acidithiobacillus ferrivorans SS3 11043990 YP_004782989.1 CDS Acife_0445 NC_015942.1 453598 456009 D KEGG: hna:Hneap_0211 protein of unknown function DUF2309; HAMAP: UPF0753 protein; PFAM: Protein of unknown function DUF2309; hypothetical protein 453598..456009 Acidithiobacillus ferrivorans SS3 11043991 YP_004782990.1 CDS Acife_0446 NC_015942.1 456086 457159 D KEGG: afr:AFE_1659 hypothetical protein; hypothetical protein 456086..457159 Acidithiobacillus ferrivorans SS3 11041705 YP_004782991.1 CDS Acife_0447 NC_015942.1 457189 458067 D KEGG: mep:MPQ_2045 hypothetical protein; hypothetical protein 457189..458067 Acidithiobacillus ferrivorans SS3 11041706 YP_004782992.1 CDS Acife_0448 NC_015942.1 458213 458758 D KEGG: syp:SYNPCC7002_A2097 dihydroorotase; hypothetical protein 458213..458758 Acidithiobacillus ferrivorans SS3 11041707 YP_004782993.1 CDS Acife_0449 NC_015942.1 458822 459655 D hypothetical protein 458822..459655 Acidithiobacillus ferrivorans SS3 11041708 YP_004782994.1 CDS Acife_0450 NC_015942.1 460132 460623 D KEGG: gvi:glr2761 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; MarR family transcriptional regulator 460132..460623 Acidithiobacillus ferrivorans SS3 11041709 YP_004782995.1 CDS Acife_0451 NC_015942.1 460731 460958 D PFAM: Iron sulphur domain-containing, CDGSH-type; KEGG: nde:NIDE0017 hypothetical protein; CDGSH-type iron sulfur domain-containing protein 460731..460958 Acidithiobacillus ferrivorans SS3 11041710 YP_004782996.1 CDS Acife_0452 NC_015942.1 460992 461636 D PFAM: Lipid/polyisoprenoid-binding, YceI-like; KEGG: afr:AFE_0461 YceI-like family protein; YceI family protein 460992..461636 Acidithiobacillus ferrivorans SS3 11041711 YP_004782997.1 CDS Acife_0453 NC_015942.1 461697 462575 D KEGG: mme:Marme_3300 hypothetical protein; hypothetical protein 461697..462575 Acidithiobacillus ferrivorans SS3 11041712 YP_004782998.1 CDS Acife_0454 NC_015942.1 462607 463059 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fri:FraEuI1c_6011 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 462607..463059 Acidithiobacillus ferrivorans SS3 11043992 YP_004782999.1 CDS Acife_0455 NC_015942.1 463115 463342 D KEGG: rah:Rahaq_4843 carboxylyase; hypothetical protein 463115..463342 Acidithiobacillus ferrivorans SS3 11041713 YP_004783000.1 CDS Acife_0456 NC_015942.1 463861 466488 D TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: tin:Tint_2563 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase 463861..466488 Acidithiobacillus ferrivorans SS3 11043993 YP_004783001.1 CDS Acife_0458 NC_015942.1 469257 469439 D hypothetical protein 469257..469439 Acidithiobacillus ferrivorans SS3 11041714 YP_004783002.1 CDS Acife_0459 NC_015942.1 469445 470659 R PFAM: Transposase, Rhodopirellula-type; KEGG: eba:ebA5952 hypothetical protein; rhodopirellula transposase family protein complement(469445..470659) Acidithiobacillus ferrivorans SS3 11041715 YP_004783003.1 CDS Acife_0460 NC_015942.1 470682 471746 D PFAM: Transposase, IS116/IS110/IS902; KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 470682..471746 Acidithiobacillus ferrivorans SS3 11041716 YP_004783004.1 CDS Acife_0462 NC_015942.1 473775 473990 D KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein; hypothetical protein 473775..473990 Acidithiobacillus ferrivorans SS3 11043995 YP_004783005.1 CDS Acife_0466 NC_015942.1 475395 476186 D PFAM: Protein of unknown function DUF481; KEGG: afr:AFE_2054 hypothetical protein; hypothetical protein 475395..476186 Acidithiobacillus ferrivorans SS3 11043996 YP_004783006.1 CDS Acife_0467 NC_015942.1 476359 476601 D TIGRFAM: Prevent-host-death protein; KEGG: mci:Mesci_2093 prevent-host-death family protein; prevent-host-death family protein 476359..476601 Acidithiobacillus ferrivorans SS3 11043997 YP_004783007.1 CDS Acife_0468 NC_015942.1 476598 476993 D PFAM: PilT protein, N-terminal; KEGG: mag:amb1706 hypothetical protein; PilT protein domain-containing protein 476598..476993 Acidithiobacillus ferrivorans SS3 11041721 YP_004783008.1 CDS Acife_0469 NC_015942.1 477071 477415 D KEGG: afr:AFE_2428 heavy metal efflux system protein, putative; heavy metal efflux system protein 477071..477415 Acidithiobacillus ferrivorans SS3 11041722 YP_004783009.1 CDS Acife_0470 NC_015942.1 477635 478204 D KEGG: afr:AFE_3146 rusticyanin; TIGRFAM: Rusticyanin; PFAM: Blue (type 1) copper domain; rusticyanin 477635..478204 Acidithiobacillus ferrivorans SS3 11041723 YP_004783010.1 CDS Acife_0471 NC_015942.1 478335 478634 D KEGG: afr:AFE_2495 hypothetical protein; hypothetical protein 478335..478634 Acidithiobacillus ferrivorans SS3 11041724 YP_004783011.1 CDS Acife_0472 NC_015942.1 478658 479065 D KEGG: afr:AFE_2494 hypothetical protein; hypothetical protein 478658..479065 Acidithiobacillus ferrivorans SS3 11041725 YP_004783012.1 CDS Acife_0473 NC_015942.1 479270 479422 D hypothetical protein 479270..479422 Acidithiobacillus ferrivorans SS3 11041726 YP_004783013.1 CDS Acife_0474 NC_015942.1 479419 480285 D KEGG: afr:AFE_2498 hypothetical protein; hypothetical protein 479419..480285 Acidithiobacillus ferrivorans SS3 11041727 YP_004783014.1 CDS Acife_0476 NC_015942.1 482119 483822 D PFAM: Transposase, IS4-like; KEGG: eba:p2A213 transposase; transposase IS4 family protein 482119..483822 Acidithiobacillus ferrivorans SS3 11041729 YP_004783015.1 CDS Acife_0477 NC_015942.1 484026 484202 D KEGG: ajs:Ajs_1976 transposase IS116/IS110/IS902 family protein; hypothetical protein 484026..484202 Acidithiobacillus ferrivorans SS3 11041730 YP_004783016.1 CDS Acife_0479 NC_015942.1 485238 485840 D PFAM: Plasmid pRiA4b ORF-3-like; KEGG: bps:BPSS2075 hypothetical protein; plasmid pRiA4b ORF-3 family protein 485238..485840 Acidithiobacillus ferrivorans SS3 11043998 YP_004783017.1 CDS Acife_0480 NC_015942.1 485894 486397 D PFAM: GCN5-related N-acetyltransferase; KEGG: afr:AFE_2467 acetyltransferase, GNAT family; GCN5-like N-acetyltransferase 485894..486397 Acidithiobacillus ferrivorans SS3 11041732 YP_004783018.1 CDS Acife_0482 NC_015942.1 488101 488619 R KEGG: afe:Lferr_0754 periplasmic solute-binding protein; hypothetical protein complement(488101..488619) Acidithiobacillus ferrivorans SS3 11041734 YP_004783019.1 CDS Acife_0483 NC_015942.1 489075 490451 D KEGG: afe:Lferr_0157 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein 489075..490451 Acidithiobacillus ferrivorans SS3 11041735 YP_004783020.1 CDS Acife_0484 NC_015942.1 490462 490677 D KEGG: afe:Lferr_0156 hypothetical protein; hypothetical protein 490462..490677 Acidithiobacillus ferrivorans SS3 11043999 YP_004783021.1 CDS Acife_0485 NC_015942.1 490830 491954 D PFAM: Carbohydrate-selective porin OprB; KEGG: afr:AFE_2250 carbohydrate-selective porin, OprB family; carbohydrate-selective porin OprB 490830..491954 Acidithiobacillus ferrivorans SS3 11044000 YP_004783022.1 CDS Acife_0486 NC_015942.1 492041 492748 D PFAM: MgtC/SapB transporter; KEGG: afe:Lferr_0155 MgtC/SapB transporter; MgtC/SapB transporter 492041..492748 Acidithiobacillus ferrivorans SS3 11041736 YP_004783023.1 CDS Acife_0487 NC_015942.1 492931 493188 D TIGRFAM: Acyl carrier protein (ACP); HAMAP: Acyl carrier protein (ACP); KEGG: afr:AFE_1909 acyl carrier protein; PFAM: Phosphopantetheine-binding; acyl carrier protein 492931..493188 Acidithiobacillus ferrivorans SS3 11044001 YP_004783024.1 CDS Acife_0489 NC_015942.1 493346 493807 R TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: afr:AFE_2421 Cd(II)/Pb(II)-responsive transcriptional regulator; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator complement(493346..493807) Acidithiobacillus ferrivorans SS3 11041738 YP_004783025.1 CDS Acife_0490 NC_015942.1 493907 494863 D KEGG: afr:AFE_2420 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein; cation diffusion facilitator family transporter 493907..494863 Acidithiobacillus ferrivorans SS3 11041739 YP_004783026.1 CDS Acife_0491 NC_015942.1 495102 495749 D KEGG: afr:AFE_2424 cation efflux permease, putative; manually curated; PFAM: Cation efflux protein; cation efflux protein 495102..495749 Acidithiobacillus ferrivorans SS3 11041740 YP_004783027.1 CDS Acife_0492 NC_015942.1 496363 497514 D PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: afe:Lferr_0188 class V aminotransferase; class V aminotransferase 496363..497514 Acidithiobacillus ferrivorans SS3 11041741 YP_004783028.1 CDS Acife_0494 NC_015942.1 497774 499099 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afe:Lferr_0195 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 497774..499099 Acidithiobacillus ferrivorans SS3 11044002 YP_004783029.1 CDS Acife_0495 NC_015942.1 499233 500870 R PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: afe:Lferr_0200 TPR repeat-containing protein; hypothetical protein complement(499233..500870) Acidithiobacillus ferrivorans SS3 11044003 YP_004783030.1 CDS Acife_0496 NC_015942.1 501109 502299 R KEGG: afr:AFE_2463 hypothetical protein; hypothetical protein complement(501109..502299) Acidithiobacillus ferrivorans SS3 11041743 YP_004783031.1 CDS Acife_0497 NC_015942.1 502455 502733 D hypothetical protein 502455..502733 Acidithiobacillus ferrivorans SS3 11041744 YP_004783032.1 CDS Acife_0498 NC_015942.1 503269 504579 D PFAM: Outer membrane efflux protein; KEGG: afe:Lferr_0170 outer membrane efflux protein; outer membrane efflux protein 503269..504579 Acidithiobacillus ferrivorans SS3 11041745 YP_004783033.1 CDS Acife_0499 NC_015942.1 504576 506012 D KEGG: afr:AFE_2433 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 504576..506012 Acidithiobacillus ferrivorans SS3 11041746 YP_004783034.1 CDS Acife_0500 NC_015942.1 506005 509115 D KEGG: afe:Lferr_0172 CzcA family heavy metal efflux pump; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump 506005..509115 Acidithiobacillus ferrivorans SS3 11041747 YP_004783035.1 CDS Acife_0501 NC_015942.1 509141 509887 D KEGG: afe:Lferr_0173 cytochrome b561; cytochrome b561 509141..509887 Acidithiobacillus ferrivorans SS3 11041748 YP_004783036.1 CDS Acife_0502 NC_015942.1 510015 510377 D KEGG: afe:Lferr_0174 hypothetical protein; hypothetical protein 510015..510377 Acidithiobacillus ferrivorans SS3 11044004 YP_004783037.1 CDS Acife_0503 NC_015942.1 510495 510803 D KEGG: afe:Lferr_2056 hypothetical protein; hypothetical protein 510495..510803 Acidithiobacillus ferrivorans SS3 11041749 YP_004783038.1 CDS Acife_0505 NC_015942.1 512118 512330 R hypothetical protein complement(512118..512330) Acidithiobacillus ferrivorans SS3 11041751 YP_004783039.1 CDS Acife_0506 NC_015942.1 512751 514475 R KEGG: ade:Adeh_0726 hypothetical protein; hypothetical protein complement(512751..514475) Acidithiobacillus ferrivorans SS3 11044005 YP_004783040.1 CDS Acife_0507 NC_015942.1 514620 515012 D hypothetical protein 514620..515012 Acidithiobacillus ferrivorans SS3 11041752 YP_004783041.1 CDS Acife_0508 NC_015942.1 515026 515346 D hypothetical protein 515026..515346 Acidithiobacillus ferrivorans SS3 11041753 YP_004783042.1 CDS Acife_0509 NC_015942.1 515343 515807 D hypothetical protein 515343..515807 Acidithiobacillus ferrivorans SS3 11041754 YP_004783043.1 CDS Acife_0510 NC_015942.1 515779 517050 D KEGG: xcv:XCVd0030 putative secreted protein; hypothetical protein 515779..517050 Acidithiobacillus ferrivorans SS3 11041755 YP_004783044.1 CDS Acife_0511 NC_015942.1 517063 517188 D hypothetical protein 517063..517188 Acidithiobacillus ferrivorans SS3 11041756 YP_004783045.1 CDS Acife_0512 NC_015942.1 517212 517847 D hypothetical protein 517212..517847 Acidithiobacillus ferrivorans SS3 11044006 YP_004783046.1 CDS Acife_0513 NC_015942.1 517844 518128 D hypothetical protein 517844..518128 Acidithiobacillus ferrivorans SS3 11044007 YP_004783047.1 CDS Acife_0514 NC_015942.1 518132 520375 D KEGG: rme:Rmet_2827 putative TraY/DotA-like type IV secretion system protein; hypothetical protein 518132..520375 Acidithiobacillus ferrivorans SS3 11041757 YP_004783048.1 CDS Acife_0515 NC_015942.1 520417 520635 D hypothetical protein 520417..520635 Acidithiobacillus ferrivorans SS3 11044008 YP_004783049.1 CDS Acife_0516 NC_015942.1 520710 522416 D PFAM: Transposase, IS4-like; KEGG: eba:p2A221 transposase; transposase IS4 family protein 520710..522416 Acidithiobacillus ferrivorans SS3 11041758 YP_004783050.1 CDS Acife_0517 NC_015942.1 522695 524389 R PFAM: Transposase, IS4-like; KEGG: eba:p2A221 transposase; transposase IS4 family protein complement(522695..524389) Acidithiobacillus ferrivorans SS3 11041759 YP_004783051.1 CDS Acife_0518 NC_015942.1 524686 527415 R KEGG: tbd:Tbd_1686 putative ATP-dependent exoDNAse (exonuclease V) alpha subunit; TIGRFAM: Conjugative relaxase region, N-terminal; PFAM: TrwC relaxase; conjugative relaxase domain-containing protein complement(524686..527415) Acidithiobacillus ferrivorans SS3 11041760 YP_004783052.1 CDS Acife_0519 NC_015942.1 527657 527845 D hypothetical protein 527657..527845 Acidithiobacillus ferrivorans SS3 11044009 YP_004783053.1 CDS Acife_0520 NC_015942.1 528016 531555 R KEGG: dba:Dbac_1053 SMC domain protein; SMC domain-containing protein complement(528016..531555) Acidithiobacillus ferrivorans SS3 11041761 YP_004783054.1 CDS Acife_0521 NC_015942.1 531552 532817 R PFAM: Metallophosphoesterase; KEGG: scl:sce7166 DNA repair exonuclease family protein; metallophosphoesterase complement(531552..532817) Acidithiobacillus ferrivorans SS3 11041762 YP_004783055.1 CDS Acife_0522 NC_015942.1 532934 533170 D KEGG: tmz:Tmz1t_0957 excision promoter, Xis; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: HTH transcriptional regulator, MerR; excisionase family DNA binding domain-containing protein 532934..533170 Acidithiobacillus ferrivorans SS3 11041763 YP_004783056.1 CDS Acife_0523 NC_015942.1 533167 536361 D KEGG: gpb:HDN1F_22900 helicase, C-terminal domain; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; helicase domain-containing protein 533167..536361 Acidithiobacillus ferrivorans SS3 11041764 YP_004783057.1 CDS Acife_0524 NC_015942.1 536358 537143 D KEGG: gpb:HDN1F_22910 hypothetical protein; hypothetical protein 536358..537143 Acidithiobacillus ferrivorans SS3 11041765 YP_004783058.1 CDS Acife_0525 NC_015942.1 537170 539155 D PFAM: DNA methylase N-4/N-6; KEGG: dac:Daci_4205 DNA methylase N-4/N-6 domain-containing protein; DNA methylase N-4/N-6 domain-containing protein 537170..539155 Acidithiobacillus ferrivorans SS3 11041766 YP_004783059.1 CDS Acife_0527 NC_015942.1 540340 543327 D PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: gpb:HDN1F_22930 type III restriction enzyme, res subunit; type III restriction protein res subunit 540340..543327 Acidithiobacillus ferrivorans SS3 11041767 YP_004783060.1 CDS Acife_0528 NC_015942.1 543407 543640 R hypothetical protein complement(543407..543640) Acidithiobacillus ferrivorans SS3 11041768 YP_004783061.1 CDS Acife_0529 NC_015942.1 543749 544915 R TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: psa:PST_3126 GGDEF domain-containing protein; SMART: Diguanylate cyclase, predicted; diguanylate cyclase complement(543749..544915) Acidithiobacillus ferrivorans SS3 11041769 YP_004783062.1 CDS Acife_0530 NC_015942.1 545212 546495 R KEGG: lhk:LHK_02469 hypothetical protein; PFAM: Phage P4 alpha, zinc-binding; SMART: Phage P4 alpha, zinc-binding; P4 alpha zinc-binding domain-containing protein complement(545212..546495) Acidithiobacillus ferrivorans SS3 11044011 YP_004783063.1 CDS Acife_0531 NC_015942.1 546529 547095 R hypothetical protein complement(546529..547095) Acidithiobacillus ferrivorans SS3 11041770 YP_004783064.1 CDS Acife_0532 NC_015942.1 547107 547634 R hypothetical protein complement(547107..547634) Acidithiobacillus ferrivorans SS3 11044012 YP_004783065.1 CDS Acife_0533 NC_015942.1 547631 548614 R PFAM: StbA; KEGG: mea:Mex_2p0044 hypothetical protein; StbA family protein complement(547631..548614) Acidithiobacillus ferrivorans SS3 11044013 YP_004783066.1 CDS Acife_0534 NC_015942.1 548618 549232 R hypothetical protein complement(548618..549232) Acidithiobacillus ferrivorans SS3 11041771 YP_004783067.1 CDS Acife_0535 NC_015942.1 549229 549489 R hypothetical protein complement(549229..549489) Acidithiobacillus ferrivorans SS3 11041772 YP_004783068.1 CDS Acife_0536 NC_015942.1 549645 550352 R KEGG: amv:ACMV_28150 hypothetical protein; hypothetical protein complement(549645..550352) Acidithiobacillus ferrivorans SS3 11044014 YP_004783069.1 CDS Acife_0537 NC_015942.1 550529 550831 R KEGG: afr:AFE_1243 hypothetical protein; hypothetical protein complement(550529..550831) Acidithiobacillus ferrivorans SS3 11044015 YP_004783070.1 CDS Acife_0538 NC_015942.1 550843 551220 R PFAM: Rickettsia 17kDa surface antigen; KEGG: afr:AFE_2919 lipoprotein, putative; 17 kDa surface antigen complement(550843..551220) Acidithiobacillus ferrivorans SS3 11041773 YP_004783071.1 CDS Acife_0539 NC_015942.1 551260 551541 R hypothetical protein complement(551260..551541) Acidithiobacillus ferrivorans SS3 11044016 YP_004783072.1 CDS Acife_0540 NC_015942.1 551553 551825 R hypothetical protein complement(551553..551825) Acidithiobacillus ferrivorans SS3 11041774 YP_004783073.1 CDS Acife_0541 NC_015942.1 551818 552993 R KEGG: cbs:COXBURSA331_A1833 Dot/Icm secretion system ATPase DotB; PFAM: Type II secretion system protein E; SMART: ATPase, AAA+ type, core; type II secretion system protein E complement(551818..552993) Acidithiobacillus ferrivorans SS3 11041775 YP_004783074.1 CDS Acife_0542 NC_015942.1 552990 553727 R KEGG: bvi:Bcep1808_7636 hypothetical protein; hypothetical protein complement(552990..553727) Acidithiobacillus ferrivorans SS3 11041776 YP_004783075.1 CDS Acife_0543 NC_015942.1 553731 554222 R KEGG: lpc:LPC_0463 lipoprotein DotD; hypothetical protein complement(553731..554222) Acidithiobacillus ferrivorans SS3 11041777 YP_004783076.1 CDS Acife_0544 NC_015942.1 554528 555475 R KEGG: afr:AFE_2766 ribose-phosphate pyrophosphokinase; TIGRFAM: Phosphoribosyl pyrophosphokinase; PFAM: Phosphoribosyltransferase; ribose-phosphate pyrophosphokinase complement(554528..555475) Acidithiobacillus ferrivorans SS3 11041779 YP_004783077.1 CDS Acife_0545 NC_015942.1 555604 556449 R TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: afr:AFE_2764 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase complement(555604..556449) Acidithiobacillus ferrivorans SS3 11041781 YP_004783078.1 CDS Acife_0546 NC_015942.1 556446 557102 R KEGG: afr:AFE_2763 outer membrane lipoprotein LolB, putative; TIGRFAM: Outer membrane lipoprotein LolB; PFAM: Outer membrane lipoprotein LolB; outer membrane lipoprotein LolB complement(556446..557102) Acidithiobacillus ferrivorans SS3 11041782 YP_004783079.1 CDS Acife_0547 NC_015942.1 557099 558760 R KEGG: afr:AFE_2762 TPR domain protein; hypothetical protein complement(557099..558760) Acidithiobacillus ferrivorans SS3 11041783 YP_004783080.1 CDS Acife_0548 NC_015942.1 558831 560147 D PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal; manually curated; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; KEGG: afr:AFE_2761 glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; glutamyl-tRNA reductase 558831..560147 Acidithiobacillus ferrivorans SS3 11044017 YP_004783081.1 CDS Acife_0549 NC_015942.1 560144 561241 D TIGRFAM: Peptide chain release factor 1; HAMAP: Peptide chain release factor 1; KEGG: afr:AFE_2760 peptide chain release factor 1; PFAM: Class I peptide chain release factor; Peptide chain release factor; peptide chain release factor 1 560144..561241 Acidithiobacillus ferrivorans SS3 11041784 YP_004783082.1 CDS Acife_0550 NC_015942.1 561231 562097 D KEGG: afr:AFE_2759 modification methylase, HemK family; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: Methyltransferase small; protein-(glutamine-N5) methyltransferase 561231..562097 Acidithiobacillus ferrivorans SS3 11041785 YP_004783083.1 CDS Acife_0551 NC_015942.1 562100 562912 D TIGRFAM: DNA glycosylase/AP lyase; HAMAP: Formamidopyrimidine-DNA glycosylase; KEGG: afr:AFE_2758 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase 562100..562912 Acidithiobacillus ferrivorans SS3 11041786 YP_004783084.1 CDS Acife_0552 NC_015942.1 562929 564908 D PFAM: GTP-binding protein, HSR1-related; KEGG: afr:AFE_2756 hypothetical protein; GTP-binding protein HSR1-like protein 562929..564908 Acidithiobacillus ferrivorans SS3 11041787 YP_004783085.1 CDS Acife_0553 NC_015942.1 564892 565143 R PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: afr:AFE_2757 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(564892..565143) Acidithiobacillus ferrivorans SS3 11041788 YP_004783086.1 CDS Acife_0554 NC_015942.1 565172 565696 R TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; HAMAP: Coenzyme A biosynthesis protein; KEGG: afr:AFE_2755 pantetheine-phosphate adenylyltransferase; PFAM: Cytidylyltransferase; phosphopantetheine adenylyltransferase complement(565172..565696) Acidithiobacillus ferrivorans SS3 11044018 YP_004783087.1 CDS Acife_0555 NC_015942.1 565689 566258 R KEGG: afr:AFE_2754 methyltransferase, putative; TIGRFAM: Conserved hypothetical protein CHP00095; PFAM: Protein of unknown function methylase putative; methyltransferase complement(565689..566258) Acidithiobacillus ferrivorans SS3 11044019 YP_004783088.1 CDS Acife_0556 NC_015942.1 566381 567478 D TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: afe:Lferr_2373 signal recognition particle-docking protein FtsY; SMART: ATPase, AAA+ type, core; signal recognition particle-docking protein FtsY 566381..567478 Acidithiobacillus ferrivorans SS3 11041789 YP_004783089.1 CDS Acife_0557 NC_015942.1 567475 568146 D TIGRFAM: Cell division ATP-binding protein FtsE; PFAM: ABC transporter-like; KEGG: afr:AFE_2752 cell division ATP-binding protein FtsE; SMART: ATPase, AAA+ type, core; cell division ATP-binding protein FtsE 567475..568146 Acidithiobacillus ferrivorans SS3 11041790 YP_004783090.1 CDS Acife_0558 NC_015942.1 568143 569048 D PFAM: Protein of unknown function DUF214, permase predicted; KEGG: afr:AFE_2751 cell division protein FtsX, putative; hypothetical protein 568143..569048 Acidithiobacillus ferrivorans SS3 11041791 YP_004783091.1 CDS Acife_0559 NC_015942.1 569123 569974 D KEGG: afr:AFE_2750 RNA polymerase sigma-32 factor; TIGRFAM: RNA polymerase sigma factor RpoH, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; RNA polymerase sigma-32 subunit RpoH 569123..569974 Acidithiobacillus ferrivorans SS3 11041792 YP_004783092.1 CDS Acife_0560 NC_015942.1 569971 570303 D KEGG: afr:AFE_2749 hypothetical protein; hypothetical protein 569971..570303 Acidithiobacillus ferrivorans SS3 11044020 YP_004783093.1 CDS Acife_0561 NC_015942.1 570325 571653 R SMART: ATPase, AAA+ type, core; TIGRFAM: Heat shock protein HslU; KEGG: afr:AFE_2748 heat shock protein HslVU, ATPase subunit HslU; HAMAP: ATP-dependent hsl protease ATP-binding subunit hslU; PFAM: ATPase associated with various cellular activities, AAA-2; Clp ATPase, C-terminal; ATP-dependent hsl protease ATP-binding subunit hslU complement(570325..571653) Acidithiobacillus ferrivorans SS3 11041793 YP_004783094.1 CDS Acife_0562 NC_015942.1 571650 572189 R TIGRFAM: ATP-dependent protease HslVU, peptidase subunit; HAMAP: ATP-dependent protease hslV; KEGG: afe:Lferr_2367 ATP-dependent protease peptidase subunit; PFAM: Proteasome, subunit alpha/beta; ATP-dependent protease hslV complement(571650..572189) Acidithiobacillus ferrivorans SS3 11041794 YP_004783095.1 CDS Acife_0563 NC_015942.1 572186 573127 R KEGG: afr:AFE_2746 tyrosine recombinase XerC; HAMAP: Tyrosine recombinase xerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; Tyrosine recombinase xerC complement(572186..573127) Acidithiobacillus ferrivorans SS3 11044021 YP_004783096.1 CDS Acife_0564 NC_015942.1 573121 573804 R PFAM: Protein of unknown function DUF484; KEGG: afr:AFE_2745 hypothetical protein; hypothetical protein complement(573121..573804) Acidithiobacillus ferrivorans SS3 11041795 YP_004783097.1 CDS Acife_0565 NC_015942.1 573805 573981 R KEGG: afr:AFE_2744 hypothetical protein; hypothetical protein complement(573805..573981) Acidithiobacillus ferrivorans SS3 11041796 YP_004783098.1 CDS Acife_0566 NC_015942.1 574017 574883 R TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: afe:Lferr_2363 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; diaminopimelate epimerase complement(574017..574883) Acidithiobacillus ferrivorans SS3 11041797 YP_004783099.1 CDS Acife_0567 NC_015942.1 575303 576493 D PFAM: Phosphate-selective porin O/P; KEGG: afr:AFE_2741 major outer membrane protein 40; phosphate-selective porin O and P 575303..576493 Acidithiobacillus ferrivorans SS3 11044023 YP_004783100.1 CDS Acife_0568 NC_015942.1 576649 578466 D KEGG: afe:Lferr_2361 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; GTP-binding protein TypA 576649..578466 Acidithiobacillus ferrivorans SS3 11044024 YP_004783101.1 CDS Acife_0569 NC_015942.1 578557 579171 R PFAM: Methyltransferase type 11; KEGG: afr:AFE_2739 phosphatidylethanolamine N-methyltransferase, putative; type 11 methyltransferase complement(578557..579171) Acidithiobacillus ferrivorans SS3 11041798 YP_004783102.1 CDS Acife_0570 NC_015942.1 579168 579551 R KEGG: afr:AFE_2738 ApaG protein; HAMAP: Protein ApaG; PFAM: ApaG; protein ApaG complement(579168..579551) Acidithiobacillus ferrivorans SS3 11044025 YP_004783103.1 CDS Acife_0571 NC_015942.1 579641 579925 R PFAM: RNA-binding, CRM domain; KEGG: afr:AFE_2737 hypothetical protein; hypothetical protein complement(579641..579925) Acidithiobacillus ferrivorans SS3 11041799 YP_004783104.1 CDS Acife_0572 NC_015942.1 580015 580674 D KEGG: afr:AFE_2736 ribosomal RNA large subunit methyltransferase J; HAMAP: Ribosomal RNA large subunit methyltransferase E; PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA large subunit methyltransferase E 580015..580674 Acidithiobacillus ferrivorans SS3 11041800 YP_004783105.1 CDS Acife_0574 NC_015942.1 581547 583217 D TIGRFAM: Hybrid cluster protein; HAMAP: Hybrid cluster protein; KEGG: afr:AFE_1657 hydroxylamine reductase; PFAM: Prismane; hydroxylamine reductase 581547..583217 Acidithiobacillus ferrivorans SS3 11041802 YP_004783106.1 CDS Acife_0575 NC_015942.1 583276 584304 D PFAM: Oxidoreductase FAD-binding region; Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; KEGG: afr:AFE_1656 ferredoxin/oxidoreductase, FAD/NAD-binding; oxidoreductase FAD-binding domain-containing protein 583276..584304 Acidithiobacillus ferrivorans SS3 11041803 YP_004783107.1 CDS Acife_0576 NC_015942.1 584441 585553 R PFAM: FIST C domain; KEGG: mep:MPQ_1799 hypothetical protein; FIST C domain-containing protein complement(584441..585553) Acidithiobacillus ferrivorans SS3 11044027 YP_004783108.1 CDS Acife_0577 NC_015942.1 585532 586182 R TIGRFAM: Endonuclease III/Nth; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: afr:AFE_2682 endonuclease III; SMART: HhH-GPD domain; endonuclease III complement(585532..586182) Acidithiobacillus ferrivorans SS3 11041804 YP_004783109.1 CDS Acife_0578 NC_015942.1 586283 586699 R KEGG: afr:AFE_2680 hypothetical protein; hypothetical protein complement(586283..586699) Acidithiobacillus ferrivorans SS3 11041805 YP_004783110.1 CDS Acife_0579 NC_015942.1 586783 588171 R PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: afr:AFE_2679 metallo-beta-lactamase family protein; RNA-metabolising metallo-beta-lactamase complement(586783..588171) Acidithiobacillus ferrivorans SS3 11041806 YP_004783111.1 CDS Acife_0580 NC_015942.1 588259 589722 R TIGRFAM: Glycogen/starch synthases, ADP-glucose type; HAMAP: Glycogen/starch synthases, ADP-glucose type; KEGG: afr:AFE_2678 glycogen synthase; PFAM: Starch synthase catalytic region; Glycosyl transferase, group 1; glycogen synthase complement(588259..589722) Acidithiobacillus ferrivorans SS3 11041807 YP_004783112.1 CDS Acife_0582 NC_015942.1 590510 592216 R KEGG: afr:AFE_2676 hypothetical protein; hypothetical protein complement(590510..592216) Acidithiobacillus ferrivorans SS3 11044028 YP_004783113.1 CDS Acife_0583 NC_015942.1 592378 592824 D PFAM: Protein of unknown function DUF1841; KEGG: afr:AFE_2675 hypothetical protein; hypothetical protein 592378..592824 Acidithiobacillus ferrivorans SS3 11041809 YP_004783114.1 CDS Acife_0584 NC_015942.1 592869 594665 D PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; Peptidase M3B, oligopeptidase F, N-terminal; KEGG: afr:AFE_2674 oligoendopeptidase F, putative; peptidase M3A and M3B thimet/oligopeptidase F 592869..594665 Acidithiobacillus ferrivorans SS3 11041810 YP_004783115.1 CDS Acife_0585 NC_015942.1 594668 596047 D TIGRFAM: Fumarate hydratase, class II; HAMAP: Fumarate hydratase class II; KEGG: afr:AFE_2673 fumarate hydratase, class II; PFAM: Fumarate lyase; Fumarase C, C-terminal; fumarate hydratase class II 594668..596047 Acidithiobacillus ferrivorans SS3 11041811 YP_004783116.1 CDS Acife_0586 NC_015942.1 596096 597256 D PFAM: DAHP synthetase I/KDSA; KEGG: afr:AFE_2671 phospho-2-dehydro-3-deoxyheptonate aldolase, putative; DAHP synthetase I/KDSA 596096..597256 Acidithiobacillus ferrivorans SS3 11041812 YP_004783117.1 CDS Acife_0587 NC_015942.1 597249 599267 R TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; HAMAP: Methionyl-tRNA synthetase; KEGG: afr:AFE_2672 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding region; methionyl-tRNA synthetase complement(597249..599267) Acidithiobacillus ferrivorans SS3 11044029 YP_004783118.1 CDS Acife_0588 NC_015942.1 599335 599613 D TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: afr:AFE_2670 50S ribosomal protein L28; PFAM: Ribosomal protein L28; 50S ribosomal protein L28 599335..599613 Acidithiobacillus ferrivorans SS3 11041813 YP_004783119.1 CDS Acife_0589 NC_015942.1 599624 599779 D TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: afr:AFE_2669 50S ribosomal protein L33; PFAM: Ribosomal protein L33; 50S ribosomal protein L33 599624..599779 Acidithiobacillus ferrivorans SS3 11041814 YP_004783120.1 CDS Acife_0590 NC_015942.1 600023 601042 D TIGRFAM: Negative regulator of class I heat shock protein; HAMAP: Negative regulator of class I heat shock protein; KEGG: afr:AFE_2667 heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; heat-inducible transcription repressor HrcA 600023..601042 Acidithiobacillus ferrivorans SS3 11041815 YP_004783121.1 CDS Acife_0591 NC_015942.1 601122 601640 D KEGG: afr:AFE_2666 co-chaperone GrpE; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor; protein grpE 601122..601640 Acidithiobacillus ferrivorans SS3 11041816 YP_004783122.1 CDS Acife_0592 NC_015942.1 601686 603590 D TIGRFAM: Chaperone DnaK; HAMAP: Chaperone DnaK; KEGG: afr:AFE_2665 chaperone protein DnaK; PFAM: Heat shock protein 70; chaperone protein dnaK 601686..603590 Acidithiobacillus ferrivorans SS3 11041817 YP_004783123.1 CDS Acife_0593 NC_015942.1 603657 604790 D SMART: Heat shock protein DnaJ, N-terminal; TIGRFAM: Chaperone DnaJ; KEGG: afr:AFE_2664 chaperone protein DnaJ; HAMAP: Chaperone protein dnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich region; chaperone protein dnaJ 603657..604790 Acidithiobacillus ferrivorans SS3 11044030 YP_004783124.1 CDS Acife_0594 NC_015942.1 604790 605620 D TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; HAMAP: Dihydrodipicolinate reductase; KEGG: afr:AFE_2663 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase; dihydrodipicolinate reductase 604790..605620 Acidithiobacillus ferrivorans SS3 11041818 YP_004783125.1 CDS Acife_0595 NC_015942.1 605650 605964 D PFAM: Antibiotic biosynthesis monooxygenase; KEGG: afr:AFE_2662 antibiotic biosynthesis monooxygenase family protein; antibiotic biosynthesis monooxygenase 605650..605964 Acidithiobacillus ferrivorans SS3 11041819 YP_004783126.1 CDS Acife_0596 NC_015942.1 605980 607056 D PFAM: ATPase-like, ParA/MinD; KEGG: afr:AFE_2661 Mrp protein; ParA/MinD ATPase-like protein 605980..607056 Acidithiobacillus ferrivorans SS3 11044031 YP_004783127.1 CDS Acife_0597 NC_015942.1 607086 607652 D KEGG: afr:AFE_2660 deoxycytidine triphosphate deaminase; TIGRFAM: Deoxycytidine triphosphate deaminase; HAMAP: Deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase 607086..607652 Acidithiobacillus ferrivorans SS3 11041820 YP_004783128.1 CDS Acife_0598 NC_015942.1 607660 608736 R PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; KEGG: dba:Dbac_3337 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase complement(607660..608736) Acidithiobacillus ferrivorans SS3 11041821 YP_004783129.1 CDS Acife_0599 NC_015942.1 608887 610308 R PFAM: Amino acid permease-associated region; KEGG: afr:AFE_2659 amino acid permease family protein; amino acid permease-associated protein complement(608887..610308) Acidithiobacillus ferrivorans SS3 11044032 YP_004783130.1 CDS Acife_0601 NC_015942.1 611322 611789 D KEGG: sfr:Sfri_2035 hypothetical protein; hypothetical protein 611322..611789 Acidithiobacillus ferrivorans SS3 11041823 YP_004783131.1 CDS Acife_0602 NC_015942.1 611808 612593 R PFAM: Major intrinsic protein; KEGG: cte:CT1472 major intrinsic protein; major intrinsic protein complement(611808..612593) Acidithiobacillus ferrivorans SS3 11041824 YP_004783132.1 CDS Acife_0603 NC_015942.1 612609 612968 R KEGG: xac:XACa0008 hypothetical protein; hypothetical protein complement(612609..612968) Acidithiobacillus ferrivorans SS3 11041825 YP_004783133.1 CDS Acife_0604 NC_015942.1 613047 613226 R KEGG: afr:AFE_1624 hypothetical protein; hypothetical protein complement(613047..613226) Acidithiobacillus ferrivorans SS3 11041826 YP_004783134.1 CDS Acife_0605 NC_015942.1 613681 613995 R KEGG: afr:AFE_2811 lipoprotein, putative; lipoprotein complement(613681..613995) Acidithiobacillus ferrivorans SS3 11041827 YP_004783135.1 CDS Acife_0606 NC_015942.1 614572 617988 D TIGRFAM: Trehalose synthase/alpha-amylase, N-terminal; PFAM: Glycosyl hydrolase, family 13, catalytic region; KEGG: nhl:Nhal_2491 trehalose synthase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; trehalose synthase 614572..617988 Acidithiobacillus ferrivorans SS3 11044033 YP_004783136.1 CDS Acife_0607 NC_015942.1 618002 620134 D TIGRFAM: Glycogen debranching enzyme GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; KEGG: dak:DaAHT2_0475 glycogen debranching enzyme GlgX; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; glycogen debranching protein GlgX 618002..620134 Acidithiobacillus ferrivorans SS3 11041828 YP_004783137.1 CDS Acife_0608 NC_015942.1 620131 621966 D TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; PFAM: Glycosyl hydrolase, family 13, catalytic region; Glycoside hydrolase, family 13, N-terminal; KEGG: nmu:Nmul_A1403 alpha amylase, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; malto-oligosyltrehalose trehalohydrolase 620131..621966 Acidithiobacillus ferrivorans SS3 11041829 YP_004783138.1 CDS Acife_0609 NC_015942.1 621963 627101 D SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM: Malto-oligosyltrehalose synthase; Glycoside hydrolase, family 77; KEGG: nmu:Nmul_A1402 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; PFAM: Glycoside hydrolase, family 77; Glycosyl hydrolase, family 13, catalytic region; malto-oligosyltrehalose synthase 621963..627101 Acidithiobacillus ferrivorans SS3 11041830 YP_004783139.1 CDS Acife_0611 NC_015942.1 627230 627490 R KEGG: afe:Lferr_2071 hypothetical protein; hypothetical protein complement(627230..627490) Acidithiobacillus ferrivorans SS3 11044034 YP_004783140.1 CDS Acife_0612 NC_015942.1 627495 627623 R hypothetical protein complement(627495..627623) Acidithiobacillus ferrivorans SS3 11041832 YP_004783141.1 CDS Acife_0613 NC_015942.1 627836 628573 R PFAM: Cytochrome c1; KEGG: afr:AFE_3111 ubiquinol--cytochrome c reductase, cytochrome c1 subunit; cytochrome c1 complement(627836..628573) Acidithiobacillus ferrivorans SS3 11041833 YP_004783142.1 CDS Acife_0614 NC_015942.1 628570 629778 R PFAM: Cytochrome b/b6, N-terminal; Cytochrome b/b6, C-terminal; KEGG: afr:AFE_3110 ubiquinol--cytochrome c reductase, cytochrome b subunit; cytochrome b/b6 domain-containing protein complement(628570..629778) Acidithiobacillus ferrivorans SS3 11041834 YP_004783143.1 CDS Acife_0615 NC_015942.1 629806 630426 R KEGG: afr:AFE_3109 ubiquinol--cytochrome c reductase, iron-sulfur subunit; TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; Twin-arginine translocation pathway, signal sequence; PFAM: Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; Rieske [2Fe-2S] iron-sulphur domain; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(629806..630426) Acidithiobacillus ferrivorans SS3 11041835 YP_004783144.1 CDS Acife_0616 NC_015942.1 630524 631312 R PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_3108 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(630524..631312) Acidithiobacillus ferrivorans SS3 11041836 YP_004783145.1 CDS Acife_0617 NC_015942.1 631305 632117 R PFAM: Cytochrome c, class I; KEGG: afe:Lferr_2705 cytochrome c class I; cytochrome c class I complement(631305..632117) Acidithiobacillus ferrivorans SS3 11044035 YP_004783146.1 CDS Acife_0618 NC_015942.1 632154 632318 R hypothetical protein complement(632154..632318) Acidithiobacillus ferrivorans SS3 11041837 YP_004783147.1 CDS Acife_0619 NC_015942.1 632671 633108 R hypothetical protein complement(632671..633108) Acidithiobacillus ferrivorans SS3 11041838 YP_004783148.1 CDS Acife_0620 NC_015942.1 633299 634000 R KEGG: afr:AFE_0956 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein complement(633299..634000) Acidithiobacillus ferrivorans SS3 11044036 YP_004783149.1 CDS Acife_0621 NC_015942.1 634171 635133 R PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_0699 sulfur assimilation transcriptional regulator, LysR family; LysR family transcriptional regulator complement(634171..635133) Acidithiobacillus ferrivorans SS3 11041839 YP_004783150.1 CDS Acife_0622 NC_015942.1 635347 636438 D KEGG: afr:AFE_0419 transaldolase; TIGRFAM: Transaldolase subfamily; PFAM: Transaldolase; transaldolase 635347..636438 Acidithiobacillus ferrivorans SS3 11041840 YP_004783151.1 CDS Acife_0623 NC_015942.1 636469 637242 R KEGG: afr:AFE_0420 enoyl-(acyl-carrier-protein) reductase; enoyl-ACP reductase complement(636469..637242) Acidithiobacillus ferrivorans SS3 11044037 YP_004783152.1 CDS Acife_0624 NC_015942.1 637266 639077 R KEGG: afr:AFE_0421 membrane-bound lytic murein transglycosylase D; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; lytic transglycosylase complement(637266..639077) Acidithiobacillus ferrivorans SS3 11041841 YP_004783153.1 CDS Acife_0625 NC_015942.1 639342 640742 D KEGG: afr:AFE_0422 glutamyl-tRNA synthetase; TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-tRNA synthetase 639342..640742 Acidithiobacillus ferrivorans SS3 11041842 YP_004783154.1 CDS Acife_0626 NC_015942.1 640855 642792 D KEGG: afr:AFE_0423 aconitate hydratase; TIGRFAM: Aconitase, putative; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; aconitate hydratase 640855..642792 Acidithiobacillus ferrivorans SS3 11041843 YP_004783155.1 CDS Acife_0627 NC_015942.1 642789 644081 D KEGG: afe:Lferr_0586 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: Isocitrate dehydrogenase NADP-dependent, prokaryotic; PFAM: Isocitrate/isopropylmalate dehydrogenase; isocitrate dehydrogenase, NADP-dependent 642789..644081 Acidithiobacillus ferrivorans SS3 11041844 YP_004783156.1 CDS Acife_0628 NC_015942.1 644091 645254 D TIGRFAM: Succinyl-CoA synthetase, beta subunit; HAMAP: Succinyl-CoA ligase [ADP-forming] subunit beta; KEGG: afr:AFE_0425 succinyl-CoA synthase, beta subunit; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA ligase (ADP-forming) subunit beta 644091..645254 Acidithiobacillus ferrivorans SS3 11044038 YP_004783157.1 CDS Acife_0629 NC_015942.1 645256 645600 D KEGG: afr:AFE_0426 hypothetical protein; hypothetical protein 645256..645600 Acidithiobacillus ferrivorans SS3 11044039 YP_004783158.1 CDS Acife_0630 NC_015942.1 645597 646469 D KEGG: afr:AFE_0427 succinyl-CoA synthetase, alpha subunit; TIGRFAM: Succinyl-CoA ligase, alpha subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding; succinyl-CoA synthetase subunit alpha 645597..646469 Acidithiobacillus ferrivorans SS3 11041845 YP_004783159.1 CDS Acife_0631 NC_015942.1 646469 648118 D KEGG: afr:AFE_0428 glutamine-dependent NAD+ synthetase; TIGRFAM: NAD+ synthase; PFAM: NAD+ synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthetase 646469..648118 Acidithiobacillus ferrivorans SS3 11041846 YP_004783160.1 CDS Acife_0632 NC_015942.1 648115 648453 D PFAM: Nitrogen regulatory protein PII; KEGG: afr:AFE_0429 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II 648115..648453 Acidithiobacillus ferrivorans SS3 11044040 YP_004783161.1 CDS Acife_0633 NC_015942.1 648498 649250 R TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: afr:AFE_0430 competence lipoprotein ComL, putative; outer membrane assembly lipoprotein YfiO complement(648498..649250) Acidithiobacillus ferrivorans SS3 11041847 YP_004783162.1 CDS Acife_0634 NC_015942.1 649279 650238 D TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: afr:AFE_0431 ribosomal large subunit pseudouridine synthase D; SMART: RNA-binding S4; RluA family pseudouridine synthase 649279..650238 Acidithiobacillus ferrivorans SS3 11044041 YP_004783163.1 CDS Acife_0635 NC_015942.1 650219 650980 D KEGG: afe:Lferr_0594 hypothetical protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase; multi-copper polyphenol oxidoreductase, laccase 650219..650980 Acidithiobacillus ferrivorans SS3 11041848 YP_004783164.1 CDS Acife_0636 NC_015942.1 650982 651530 D KEGG: afr:AFE_0433 dioxygenase, ARD/ARD' family; HAMAP: Acireductone dioxygenase; PFAM: Acireductone dioxygenase, ARD; Acireductone dioxygenase 650982..651530 Acidithiobacillus ferrivorans SS3 11041849 YP_004783165.1 CDS Acife_0637 NC_015942.1 651527 652699 D PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; KEGG: afr:AFE_0434 ribulose bisphosphate carboxylase, large subunit 2; ribulose bisphosphate carboxylase large chain 651527..652699 Acidithiobacillus ferrivorans SS3 11041850 YP_004783166.1 CDS Acife_0638 NC_015942.1 652684 653352 D PFAM: Haloacid dehalogenase-like hydrolase; KEGG: afe:Lferr_0597 haloacid dehalogenase domain-containing protein hydrolase; haloacid dehalogenase domain-containing protein hydrolase 652684..653352 Acidithiobacillus ferrivorans SS3 11041851 YP_004783167.1 CDS Acife_0639 NC_015942.1 653342 653962 D TIGRFAM: Methylthioribulose-1-phosphate dehydratase; HAMAP: Methylthioribulose-1-phosphate dehydratase; KEGG: afr:AFE_0436 aldolase, class II; PFAM: Class II aldolase/adducin, N-terminal; methylthioribulose-1-phosphate dehydratase 653342..653962 Acidithiobacillus ferrivorans SS3 11041852 YP_004783168.1 CDS Acife_0640 NC_015942.1 653964 654485 D PFAM: Amino acid-binding ACT; KEGG: afr:AFE_0437 ACT domain protein; amino acid-binding ACT domain-containing protein 653964..654485 Acidithiobacillus ferrivorans SS3 11041853 YP_004783169.1 CDS Acife_0641 NC_015942.1 654485 654988 D TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: afr:AFE_0438 polypeptide deformylase; PFAM: Formylmethionine deformylase; peptide deformylase 654485..654988 Acidithiobacillus ferrivorans SS3 11044042 YP_004783170.1 CDS Acife_0642 NC_015942.1 655463 656170 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: afr:AFE_0768 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 655463..656170 Acidithiobacillus ferrivorans SS3 11041854 YP_004783171.1 CDS Acife_0643 NC_015942.1 656218 656616 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: afr:AFE_0769 biopolymer transport protein, ExbD/TolR family; biopolymer transport protein ExbD/TolR 656218..656616 Acidithiobacillus ferrivorans SS3 11041855 YP_004783172.1 CDS Acife_0644 NC_015942.1 656707 657459 D TIGRFAM: TonB, C-terminal; KEGG: afe:Lferr_0913 TonB family protein; TonB family protein 656707..657459 Acidithiobacillus ferrivorans SS3 11041856 YP_004783173.1 CDS Acife_0645 NC_015942.1 657518 658921 D PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: afr:AFE_0771 cytosine/purines/uracil/thiamine/allantoin permease family protein; cytosine/purines uracil thiamine allantoin permease 657518..658921 Acidithiobacillus ferrivorans SS3 11041857 YP_004783174.1 CDS Acife_0646 NC_015942.1 658933 660168 D PFAM: Amidohydrolase 1; KEGG: afr:AFE_0772 guanine deaminase, putative; amidohydrolase 658933..660168 Acidithiobacillus ferrivorans SS3 11041858 YP_004783175.1 CDS Acife_0647 NC_015942.1 660217 661257 D TIGRFAM: Adenosine deaminase; HAMAP: Adenosine deaminase; KEGG: afr:AFE_0773 adenosine deaminase; PFAM: Adenosine/AMP deaminase; adenosine deaminase 660217..661257 Acidithiobacillus ferrivorans SS3 11041859 YP_004783176.1 CDS Acife_0648 NC_015942.1 661284 662285 D PFAM: Purine nucleoside permease; KEGG: afe:Lferr_0917 purine nucleoside permease-like protein; purine nucleoside permease 661284..662285 Acidithiobacillus ferrivorans SS3 11044043 YP_004783177.1 CDS Acife_0649 NC_015942.1 662347 664608 D PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; KEGG: afr:AFE_0775 xanthine dehydrogenase, molybdenum-binding subunit, putative; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 662347..664608 Acidithiobacillus ferrivorans SS3 11041860 YP_004783178.1 CDS Acife_0650 NC_015942.1 664605 665066 D PFAM: [2Fe-2S]-binding; Ferredoxin; KEGG: afr:AFE_0776 xanthine dehydrogenase, iron-sulfur binding subunit, putative; (2Fe-2S)-binding domain-containing protein 664605..665066 Acidithiobacillus ferrivorans SS3 11041861 YP_004783179.1 CDS Acife_0651 NC_015942.1 665059 665925 D PFAM: Molybdopterin dehydrogenase, FAD-binding; KEGG: afr:AFE_0777 xanthine dehydrogenase, FAD-binding protein, putative; FAD-binding molybdopterin dehydrogenase 665059..665925 Acidithiobacillus ferrivorans SS3 11041862 YP_004783180.1 CDS Acife_0652 NC_015942.1 665929 666513 D KEGG: afr:AFE_0778 hypothetical protein; hypothetical protein 665929..666513 Acidithiobacillus ferrivorans SS3 11041863 YP_004783181.1 CDS Acife_0653 NC_015942.1 666532 667623 D KEGG: afr:AFE_0779 cyanuric acid amidohydrolase; TIGRFAM: Amidohydrolase ring-opening, AtzD/TrzD; PFAM: Amidohydrolase ring-opening, AtzD/TrzD; ring-opening amidohydrolase 666532..667623 Acidithiobacillus ferrivorans SS3 11044044 YP_004783182.1 CDS Acife_0654 NC_015942.1 667620 668561 D PFAM: XdhC- CoxI; KEGG: afr:AFE_0780 xanthine dehydrogenase accessory factor, putative; XshC-Cox1-family protein 667620..668561 Acidithiobacillus ferrivorans SS3 11041864 YP_004783183.1 CDS Acife_0655 NC_015942.1 668578 668778 D KEGG: afr:AFE_0781 hypothetical protein; hypothetical protein 668578..668778 Acidithiobacillus ferrivorans SS3 11041865 YP_004783184.1 CDS Acife_0656 NC_015942.1 668775 670172 D KEGG: afr:AFE_0782 amidohydrolase, AtzE family; TIGRFAM: Amidohydrolase, AtzE type; PFAM: Amidase; amidohydrolase, AtzE family 668775..670172 Acidithiobacillus ferrivorans SS3 11041866 YP_004783185.1 CDS Acife_0657 NC_015942.1 670186 670572 D KEGG: afr:AFE_0783 hypothetical protein; hypothetical protein 670186..670572 Acidithiobacillus ferrivorans SS3 11041867 YP_004783186.1 CDS Acife_0658 NC_015942.1 670581 671189 D KEGG: afr:AFE_0784 hypothetical protein; hypothetical protein 670581..671189 Acidithiobacillus ferrivorans SS3 11041868 YP_004783187.1 CDS Acife_0659 NC_015942.1 671186 672805 D KEGG: afr:AFE_0785 gamma-glutamyltranspeptidase; TIGRFAM: Gamma-glutamyltranspeptidase; PFAM: Gamma-glutamyltranspeptidase; gamma-glutamyltransferase 671186..672805 Acidithiobacillus ferrivorans SS3 11041869 YP_004783188.1 CDS Acife_0660 NC_015942.1 672839 673759 R PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_0761 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(672839..673759) Acidithiobacillus ferrivorans SS3 11041870 YP_004783189.1 CDS Acife_0661 NC_015942.1 674034 676370 D PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: afr:AFE_0763 TonB-dependent receptor, putative; TonB-dependent receptor 674034..676370 Acidithiobacillus ferrivorans SS3 11044045 YP_004783190.1 CDS Acife_0662 NC_015942.1 676548 677921 D PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: mse:Msed_1135 permease for cytosine/purine, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 676548..677921 Acidithiobacillus ferrivorans SS3 11041871 YP_004783191.1 CDS Acife_0663 NC_015942.1 677918 678364 D KEGG: gau:GAU_1451 cytidine deaminase; TIGRFAM: Cytidine deaminase, homotetrameric; PFAM: CMP/dCMP deaminase, zinc-binding; cytidine deaminase 677918..678364 Acidithiobacillus ferrivorans SS3 11041872 YP_004783192.1 CDS Acife_0664 NC_015942.1 678741 679751 D KEGG: shl:Shal_1632 purine phosphorylase family 1; hypothetical protein 678741..679751 Acidithiobacillus ferrivorans SS3 11041873 YP_004783193.1 CDS Acife_0665 NC_015942.1 679911 682274 D PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: afr:AFE_3229 TonB-dependent receptor; TonB-dependent receptor 679911..682274 Acidithiobacillus ferrivorans SS3 11041874 YP_004783194.1 CDS Acife_0666 NC_015942.1 682480 682875 D manually curated; hypothetical protein 682480..682875 Acidithiobacillus ferrivorans SS3 11044046 YP_004783195.1 CDS Acife_0667 NC_015942.1 683106 685919 D PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: afr:AFE_3230 hypothetical protein; SMP-30/gluconolaconase/LRE-like region-containing protein 683106..685919 Acidithiobacillus ferrivorans SS3 11041875 YP_004783196.1 CDS Acife_0668 NC_015942.1 686101 688215 D PFAM: DNA methylase, adenine-specific; KEGG: tcx:Tcr_0332 N-6 DNA methylase; N-6 DNA methylase 686101..688215 Acidithiobacillus ferrivorans SS3 11044047 YP_004783197.1 CDS Acife_0669 NC_015942.1 688212 689414 D PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: rba:RB11377 polypeptide HsdS; restriction modification system DNA specificity domain-containing protein 688212..689414 Acidithiobacillus ferrivorans SS3 11041876 YP_004783198.1 CDS Acife_0670 NC_015942.1 689489 690967 D KEGG: axy:AXYL_03767 hypothetical protein; hypothetical protein 689489..690967 Acidithiobacillus ferrivorans SS3 11041877 YP_004783199.1 CDS Acife_0671 NC_015942.1 690967 691926 D KEGG: cbt:CLH_2146 hypothetical protein; hypothetical protein 690967..691926 Acidithiobacillus ferrivorans SS3 11041878 YP_004783200.1 CDS Acife_0672 NC_015942.1 691904 692065 D hypothetical protein 691904..692065 Acidithiobacillus ferrivorans SS3 11041879 YP_004783201.1 CDS Acife_0673 NC_015942.1 692075 692296 D KEGG: hip:CGSHiEE_05075 hypothetical protein; hypothetical protein 692075..692296 Acidithiobacillus ferrivorans SS3 11044048 YP_004783202.1 CDS Acife_0674 NC_015942.1 692379 693389 D PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: aeh:Mlg_1123 death-on-curing protein; filamentation induced by cAMP protein Fic 692379..693389 Acidithiobacillus ferrivorans SS3 11041880 YP_004783203.1 CDS Acife_0675 NC_015942.1 693386 696622 D TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicase, N-terminal; HsdR family type I site-specific deoxyribonuclease 693386..696622 Acidithiobacillus ferrivorans SS3 11041881 YP_004783204.1 CDS Acife_0676 NC_015942.1 696822 697157 R KEGG: xac:XACb0032 hypothetical protein; hypothetical protein complement(696822..697157) Acidithiobacillus ferrivorans SS3 11041882 YP_004783205.1 CDS Acife_0677 NC_015942.1 697154 697369 R KEGG: alv:Alvin_3091 hypothetical protein; hypothetical protein complement(697154..697369) Acidithiobacillus ferrivorans SS3 11041883 YP_004783206.1 CDS Acife_0678 NC_015942.1 697640 698146 R KEGG: afr:AFE_0443 hypothetical protein; hypothetical protein complement(697640..698146) Acidithiobacillus ferrivorans SS3 11044049 YP_004783207.1 CDS Acife_0679 NC_015942.1 698146 698478 R KEGG: afr:AFE_0444 hypothetical protein; hypothetical protein complement(698146..698478) Acidithiobacillus ferrivorans SS3 11041884 YP_004783208.1 CDS Acife_0680 NC_015942.1 698543 699439 R KEGG: afr:AFE_0445 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase complement(698543..699439) Acidithiobacillus ferrivorans SS3 11044050 YP_004783209.1 CDS Acife_0681 NC_015942.1 699519 700214 R PFAM: Protein of unknown function DUF502; KEGG: afr:AFE_0446 hypothetical protein; hypothetical protein complement(699519..700214) Acidithiobacillus ferrivorans SS3 11041885 YP_004783210.1 CDS Acife_0682 NC_015942.1 700287 701717 R KEGG: afr:AFE_0447 sigma-54 dependent DNA-binding response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; two component sigma-54 specific Fis family transcriptional regulator complement(700287..701717) Acidithiobacillus ferrivorans SS3 11041886 YP_004783211.1 CDS Acife_0683 NC_015942.1 701674 702165 R KEGG: afr:AFE_0448 lipoprotein, putative; lipoprotein complement(701674..702165) Acidithiobacillus ferrivorans SS3 11044051 YP_004783212.1 CDS Acife_0684 NC_015942.1 702165 703649 R KEGG: afr:AFE_0449 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; integral membrane sensor signal transduction histidine kinase complement(702165..703649) Acidithiobacillus ferrivorans SS3 11044052 YP_004783213.1 CDS Acife_0685 NC_015942.1 703924 705600 R KEGG: afr:AFE_0450 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC protein, N-terminal; DNA repair protein RecN complement(703924..705600) Acidithiobacillus ferrivorans SS3 11041887 YP_004783214.1 CDS Acife_0686 NC_015942.1 705600 706487 R KEGG: afr:AFE_0451 ATP-NAD kinase; HAMAP: inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD/AcoX kinase; inorganic polyphosphate/ATP-NAD kinase complement(705600..706487) Acidithiobacillus ferrivorans SS3 11041888 YP_004783215.1 CDS Acife_0687 NC_015942.1 706555 707292 R TIGRFAM: Bordetella pertussis Bvg accessory factor; HAMAP: Type III pantothenate kinase; KEGG: afr:AFE_0452 transcriptional activator, putative, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; putative Baf family transcriptional acitvator complement(706555..707292) Acidithiobacillus ferrivorans SS3 11044053 YP_004783216.1 CDS Acife_0688 NC_015942.1 707289 708230 R KEGG: afe:Lferr_0614 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; biotin/acetyl-CoA-carboxylase ligase complement(707289..708230) Acidithiobacillus ferrivorans SS3 11041889 YP_004783217.1 CDS Acife_0689 NC_015942.1 708211 709467 R TIGRFAM: Gamma-glutamyl phosphate reductase GPR; HAMAP: Glutamate-5-semialdehyde dehydrogenase; KEGG: afr:AFE_0454 gamma-glutamyl phosphate reductase; PFAM: Aldehyde dehydrogenase; gamma-glutamyl phosphate reductase complement(708211..709467) Acidithiobacillus ferrivorans SS3 11041890 YP_004783218.1 CDS Acife_0691 NC_015942.1 709993 710838 D PFAM: TnsA endonuclease, N-terminal; KEGG: afe:Lferr_0222 TnsA endonuclease; TnsA endonuclease 709993..710838 Acidithiobacillus ferrivorans SS3 11041892 YP_004783219.1 CDS Acife_0692 NC_015942.1 710842 713049 D PFAM: Integrase, catalytic core; KEGG: afe:Lferr_0221 Tn7-like transposition protein B; integrase catalytic subunit 710842..713049 Acidithiobacillus ferrivorans SS3 11041893 YP_004783220.1 CDS Acife_0694 NC_015942.1 713346 714779 D KEGG: rfr:Rfer_4034 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: Glucose-6-phosphate dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 713346..714779 Acidithiobacillus ferrivorans SS3 11041895 YP_004783221.1 CDS Acife_0695 NC_015942.1 715204 717714 D KEGG: hna:Hneap_0924 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; Copper ion-binding; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase 715204..717714 Acidithiobacillus ferrivorans SS3 11041896 YP_004783222.1 CDS Acife_0696 NC_015942.1 717742 718137 D PFAM: Protein of unknown function DUF302; KEGG: afr:AFE_2447 hypothetical protein; hypothetical protein 717742..718137 Acidithiobacillus ferrivorans SS3 11041897 YP_004783223.1 CDS Acife_0697 NC_015942.1 718200 718406 D PFAM: Heavy metal transport/detoxification protein; KEGG: afr:AFE_2448 heavy metal-binding protein, putative; heavy metal transport/detoxification protein 718200..718406 Acidithiobacillus ferrivorans SS3 11044054 YP_004783224.1 CDS Acife_0698 NC_015942.1 718427 718672 D PFAM: Glutaredoxin; KEGG: afr:AFE_2449 hypothetical protein; glutaredoxin 718427..718672 Acidithiobacillus ferrivorans SS3 11041898 YP_004783225.1 CDS Acife_0699 NC_015942.1 718888 719745 D KEGG: dge:Dgeo_2559 hypothetical protein; hypothetical protein 718888..719745 Acidithiobacillus ferrivorans SS3 11041899 YP_004783226.1 CDS Acife_0700 NC_015942.1 719851 720828 R KEGG: neu:NE0744 hypothetical protein; hypothetical protein complement(719851..720828) Acidithiobacillus ferrivorans SS3 11041900 YP_004783227.1 CDS Acife_0701 NC_015942.1 721282 722139 R KEGG: mmi:MMAR_2604 hypothetical protein; hypothetical protein complement(721282..722139) Acidithiobacillus ferrivorans SS3 11041901 YP_004783228.1 CDS Acife_0702 NC_015942.1 722218 722841 R PFAM: Resolvase, N-terminal; KEGG: gme:Gmet_3142 resolvase-like protein; resolvase domain-containing protein complement(722218..722841) Acidithiobacillus ferrivorans SS3 11041902 YP_004783229.1 CDS Acife_0703 NC_015942.1 722980 726009 D PFAM: Transposase, Tn3; KEGG: adn:Alide_4602 transposase Tn3 family protein; transposase Tn3 family protein 722980..726009 Acidithiobacillus ferrivorans SS3 11041903 YP_004783230.1 CDS Acife_0705 NC_015942.1 726404 726613 D hypothetical protein 726404..726613 Acidithiobacillus ferrivorans SS3 11041904 YP_004783231.1 CDS Acife_0707 NC_015942.1 726845 727699 R KEGG: afr:AFE_0698 S-formylglutathione hydrolase; TIGRFAM: S-formylglutathione hydrolase; PFAM: Putative esterase; S-formylglutathione hydrolase complement(726845..727699) Acidithiobacillus ferrivorans SS3 11041906 YP_004783232.1 CDS Acife_0708 NC_015942.1 727699 728808 R KEGG: afr:AFE_0697 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase complement(727699..728808) Acidithiobacillus ferrivorans SS3 11041907 YP_004783233.1 CDS Acife_0709 NC_015942.1 728908 729492 R KEGG: afr:AFE_0696 glutathione-dependent formaldehyde-activating enzyme; TIGRFAM: S-(hydroxymethyl)glutathione synthase; PFAM: Glutathione-dependent formaldehyde-activating, GFA; S-(hydroxymethyl)glutathione synthase complement(728908..729492) Acidithiobacillus ferrivorans SS3 11044056 YP_004783234.1 CDS Acife_0710 NC_015942.1 729948 732134 R KEGG: afe:Lferr_0842 fis family sigma-54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; Fis family sigma-54 specific transcriptional regulator complement(729948..732134) Acidithiobacillus ferrivorans SS3 11041908 YP_004783235.1 CDS Acife_0711 NC_015942.1 732119 732568 R PFAM: Protein of unknown function DUF2442; KEGG: gbm:Gbem_0416 hypothetical protein; hypothetical protein complement(732119..732568) Acidithiobacillus ferrivorans SS3 11041909 YP_004783236.1 CDS Acife_0712 NC_015942.1 733190 733780 R manually curated; KEGG: aaa:Acav_1435 hypothetical protein; hypothetical protein complement(733190..733780) Acidithiobacillus ferrivorans SS3 11041910 YP_004783237.1 CDS Acife_0713 NC_015942.1 733770 734918 R KEGG: aaa:Acav_1436 hypothetical protein; PFAM: Protein of unknown function DUF955; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; hypothetical protein complement(733770..734918) Acidithiobacillus ferrivorans SS3 11041911 YP_004783238.1 CDS Acife_0714 NC_015942.1 734981 735889 R KEGG: bpy:Bphyt_0239 hypothetical protein; hypothetical protein complement(734981..735889) Acidithiobacillus ferrivorans SS3 11044057 YP_004783239.1 CDS Acife_0715 NC_015942.1 735882 736568 R KEGG: bvi:Bcep1808_7631 hypothetical protein; hypothetical protein complement(735882..736568) Acidithiobacillus ferrivorans SS3 11041912 YP_004783240.1 CDS Acife_0716 NC_015942.1 736595 737152 R hypothetical protein complement(736595..737152) Acidithiobacillus ferrivorans SS3 11041913 YP_004783241.1 CDS Acife_0717 NC_015942.1 738057 739019 D PFAM: AntA/AntB antirepressor; KEGG: btr:Btr_0954 hypothetical protein; AntA/AntB antirepressor domain-containing protein 738057..739019 Acidithiobacillus ferrivorans SS3 11044058 YP_004783242.1 CDS Acife_0718 NC_015942.1 739160 739609 D hypothetical protein 739160..739609 Acidithiobacillus ferrivorans SS3 11041914 YP_004783243.1 CDS Acife_0719 NC_015942.1 739609 741876 D PFAM: TRAG protein; KEGG: hna:Hneap_1649 TraG family protein; TRAG family protein 739609..741876 Acidithiobacillus ferrivorans SS3 11041915 YP_004783244.1 CDS Acife_0720 NC_015942.1 741985 743493 D PFAM: HipA-like, N-terminal; HipA-like, C-terminal; KEGG: rah:Rahaq_3819 HipA domain protein; HipA domain-containing protein 741985..743493 Acidithiobacillus ferrivorans SS3 11041916 YP_004783245.1 CDS Acife_0721 NC_015942.1 744025 744813 D KEGG: gsu:GSU0959 hypothetical protein; hypothetical protein 744025..744813 Acidithiobacillus ferrivorans SS3 11041917 YP_004783246.1 CDS Acife_0722 NC_015942.1 745359 746204 R KEGG: pat:Patl_2748 hypothetical protein; hypothetical protein complement(745359..746204) Acidithiobacillus ferrivorans SS3 11044059 YP_004783247.1 CDS Acife_0723 NC_015942.1 746376 747482 R KEGG: afr:AFE_1752 hypothetical protein; hypothetical protein complement(746376..747482) Acidithiobacillus ferrivorans SS3 11041918 YP_004783248.1 CDS Acife_0724 NC_015942.1 747621 748904 R PFAM: DNA-repair protein, UmuC-like; KEGG: afr:AFE_1751 UmuC protein; UMUC domain-containing protein DNA-repair protein complement(747621..748904) Acidithiobacillus ferrivorans SS3 11044060 YP_004783249.1 CDS Acife_0725 NC_015942.1 748912 749391 R PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: afr:AFE_1750 UmuD protein; peptidase S24/S26A/S26B complement(748912..749391) Acidithiobacillus ferrivorans SS3 11041919 YP_004783250.1 CDS Acife_0726 NC_015942.1 749381 749620 R hypothetical protein complement(749381..749620) Acidithiobacillus ferrivorans SS3 11041920 YP_004783251.1 CDS Acife_0727 NC_015942.1 749718 750401 R PFAM: Protein of unknown function DUF159; KEGG: afr:AFE_1749 hypothetical protein; hypothetical protein complement(749718..750401) Acidithiobacillus ferrivorans SS3 11044061 YP_004783252.1 CDS Acife_0728 NC_015942.1 750491 752674 D KEGG: nha:Nham_2841 helicase RecD/TraA; TIGRFAM: DNA helicase, RecD/TraA type; SMART: ATPase, AAA+ type, core; Helix-hairpin-helix DNA-binding motif, class 1; RecD/TraA family helicase 750491..752674 Acidithiobacillus ferrivorans SS3 11041921 YP_004783253.1 CDS Acife_0729 NC_015942.1 753040 753993 R KEGG: cpc:Cpar_0666 hypothetical protein; hypothetical protein complement(753040..753993) Acidithiobacillus ferrivorans SS3 11041922 YP_004783254.1 CDS Acife_0730 NC_015942.1 754070 754390 D manually curated; PFAM: Histone-like bacterial DNA-binding protein; KEGG: afr:AFE_1070 DNA-binding protein, HU family; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 754070..754390 Acidithiobacillus ferrivorans SS3 11041923 YP_004783255.1 CDS Acife_0731 NC_015942.1 755124 755480 D hypothetical protein 755124..755480 Acidithiobacillus ferrivorans SS3 11044062 YP_004783256.1 CDS Acife_0732 NC_015942.1 756389 756751 D PFAM: Dynein light chain-related; KEGG: afr:AFE_2578 roadblock/LC7 domain protein; Roadblock/LC7 family protein 756389..756751 Acidithiobacillus ferrivorans SS3 11041924 YP_004783257.1 CDS Acife_0733 NC_015942.1 756918 757466 D KEGG: cts:Ctha_0396 hypothetical protein; hypothetical protein 756918..757466 Acidithiobacillus ferrivorans SS3 11044063 YP_004783258.1 CDS Acife_0734 NC_015942.1 757679 760336 D TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: afe:Lferr_1405 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase 757679..760336 Acidithiobacillus ferrivorans SS3 11044064 YP_004783259.1 CDS Acife_0735 NC_015942.1 760336 760647 D PFAM: Nitrogen regulatory protein PII; KEGG: cti:RALTA_A0736 regulatory protein (p-ii) for nitrogen assimilation by glutamine synthetase (ATase); nitrogen regulatory protein P-II 760336..760647 Acidithiobacillus ferrivorans SS3 11041925 YP_004783260.1 CDS Acife_0736 NC_015942.1 760775 761137 D PFAM: Dynein light chain-related; KEGG: afr:AFE_2578 roadblock/LC7 domain protein; Roadblock/LC7 family protein 760775..761137 Acidithiobacillus ferrivorans SS3 11041926 YP_004783261.1 CDS Acife_0737 NC_015942.1 761168 761704 D KEGG: gmc:GY4MC1_1878 methyl-accepting chemotaxis sensory transducer; hypothetical protein 761168..761704 Acidithiobacillus ferrivorans SS3 11044065 YP_004783262.1 CDS Acife_0738 NC_015942.1 761991 762731 R KEGG: afr:AFE_1072 hypothetical protein; manually curated; PFAM: RES; RES domain-containing protein complement(761991..762731) Acidithiobacillus ferrivorans SS3 11044066 YP_004783263.1 CDS Acife_0739 NC_015942.1 762731 763123 R KEGG: afr:AFE_1071 hypothetical protein; hypothetical protein complement(762731..763123) Acidithiobacillus ferrivorans SS3 11041927 YP_004783264.1 CDS Acife_0740 NC_015942.1 763621 763830 D hypothetical protein 763621..763830 Acidithiobacillus ferrivorans SS3 11044067 YP_004783265.1 CDS Acife_0741 NC_015942.1 763820 764203 D manually curated; hypothetical protein 763820..764203 Acidithiobacillus ferrivorans SS3 11041928 YP_004783266.1 CDS Acife_0742 NC_015942.1 764310 764651 D hypothetical protein 764310..764651 Acidithiobacillus ferrivorans SS3 11041929 YP_004783267.1 CDS Acife_0743 NC_015942.1 764769 765890 D KEGG: afr:AFE_3189 hypothetical protein; hypothetical protein 764769..765890 Acidithiobacillus ferrivorans SS3 11041930 YP_004783268.1 CDS Acife_0744 NC_015942.1 765860 766363 D KEGG: afe:Lferr_1541 hypothetical protein; hypothetical protein 765860..766363 Acidithiobacillus ferrivorans SS3 11041931 YP_004783269.1 CDS Acife_0745 NC_015942.1 766356 766493 D hypothetical protein 766356..766493 Acidithiobacillus ferrivorans SS3 11041932 YP_004783270.1 CDS Acife_0746 NC_015942.1 766476 766604 R hypothetical protein complement(766476..766604) Acidithiobacillus ferrivorans SS3 11041933 YP_004783271.1 CDS Acife_0747 NC_015942.1 766819 770508 D KEGG: cmi:CMM_1110 hypothetical protein; hypothetical protein 766819..770508 Acidithiobacillus ferrivorans SS3 11044068 YP_004783272.1 CDS Acife_0748 NC_015942.1 770771 771145 D KEGG: ava:Ava_C0048 hypothetical protein; hypothetical protein 770771..771145 Acidithiobacillus ferrivorans SS3 11041934 YP_004783273.1 CDS Acife_0749 NC_015942.1 771165 771701 D KEGG: tmz:Tmz1t_2370 hypothetical protein; hypothetical protein 771165..771701 Acidithiobacillus ferrivorans SS3 11041935 YP_004783274.1 CDS Acife_0750 NC_015942.1 772034 772276 D hypothetical protein 772034..772276 Acidithiobacillus ferrivorans SS3 11041936 YP_004783275.1 CDS Acife_0751 NC_015942.1 772590 773396 D KEGG: pao:Pat9b_2156 hypothetical protein; hypothetical protein 772590..773396 Acidithiobacillus ferrivorans SS3 11041937 YP_004783276.1 CDS Acife_0752 NC_015942.1 773499 773774 D KEGG: afr:AFE_1584 DNA-binding protein HU family protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 773499..773774 Acidithiobacillus ferrivorans SS3 11041938 YP_004783277.1 CDS Acife_0753 NC_015942.1 773796 773897 D PFAM: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 773796..773897 Acidithiobacillus ferrivorans SS3 11041939 YP_004783278.1 CDS Acife_0754 NC_015942.1 774012 774749 D PFAM: TnsA endonuclease, N-terminal; KEGG: afe:Lferr_0222 TnsA endonuclease; TnsA endonuclease 774012..774749 Acidithiobacillus ferrivorans SS3 11041940 YP_004783279.1 CDS Acife_0755 NC_015942.1 774863 775240 D KEGG: afe:Lferr_0221 Tn7-like transposition protein B; hypothetical protein 774863..775240 Acidithiobacillus ferrivorans SS3 11044069 YP_004783280.1 CDS Acife_0756 NC_015942.1 775184 775762 R PFAM: Resolvase, N-terminal; KEGG: sus:Acid_6125 resolvase domain-containing protein; resolvase domain-containing protein complement(775184..775762) Acidithiobacillus ferrivorans SS3 11041941 YP_004783281.1 CDS Acife_0757 NC_015942.1 775884 776543 D PFAM: Plasmid pRiA4b ORF-3-like; KEGG: syp:SYNPCC7002_G0040 hypothetical protein; plasmid pRiA4b ORF-3 family protein 775884..776543 Acidithiobacillus ferrivorans SS3 11044070 YP_004783282.1 CDS Acife_0758 NC_015942.1 776543 777973 D KEGG: syp:SYNPCC7002_G0041 hypothetical protein; hypothetical protein 776543..777973 Acidithiobacillus ferrivorans SS3 11044071 YP_004783283.1 CDS Acife_0759 NC_015942.1 777956 779506 R PFAM: Cytochrome c assembly protein, transmembrane region; KEGG: afr:AFE_0545 thiol:disulfide interchange protein DsbD; cytochrome c biogenesis protein transmembrane region complement(777956..779506) Acidithiobacillus ferrivorans SS3 11041942 YP_004783284.1 CDS Acife_0760 NC_015942.1 779607 780569 R PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: pat:Patl_0274 redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen complement(779607..780569) Acidithiobacillus ferrivorans SS3 11044072 YP_004783285.1 CDS Acife_0761 NC_015942.1 780566 781198 R KEGG: mmb:Mmol_1963 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit complement(780566..781198) Acidithiobacillus ferrivorans SS3 11041943 YP_004783286.1 CDS Acife_0762 NC_015942.1 781232 781696 R PFAM: Protein of unknown function DUF302; KEGG: dsh:Dshi_2075 hypothetical protein; hypothetical protein complement(781232..781696) Acidithiobacillus ferrivorans SS3 11041944 YP_004783287.1 CDS Acife_0763 NC_015942.1 781957 782244 D PFAM: Transposase IS3/IS911; KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 781957..782244 Acidithiobacillus ferrivorans SS3 11041945 YP_004783288.1 CDS Acife_0764 NC_015942.1 782241 783125 D KEGG: pna:Pnap_0429 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core; integrase catalytic subunit 782241..783125 Acidithiobacillus ferrivorans SS3 11041946 YP_004783289.1 CDS Acife_0765 NC_015942.1 783183 783686 R KEGG: bgl:bglu_2g14420 disulfide isomerase/thiol-disulfide oxidase; hypothetical protein complement(783183..783686) Acidithiobacillus ferrivorans SS3 11041947 YP_004783290.1 CDS Acife_0766 NC_015942.1 783808 784185 R KEGG: afr:AFE_2508 hypothetical protein; hypothetical protein complement(783808..784185) Acidithiobacillus ferrivorans SS3 11041948 YP_004783291.1 CDS Acife_0767 NC_015942.1 784257 784970 R PFAM: Protein of unknown function DUF2063; KEGG: nha:Nham_4648 hypothetical protein; hypothetical protein complement(784257..784970) Acidithiobacillus ferrivorans SS3 11044073 YP_004783292.1 CDS Acife_0768 NC_015942.1 784963 785841 R PFAM: Protein of unknown function DUF692; KEGG: pol:Bpro_4790 hypothetical protein; hypothetical protein complement(784963..785841) Acidithiobacillus ferrivorans SS3 11041949 YP_004783293.1 CDS Acife_0769 NC_015942.1 785942 786229 R PFAM: Protein of unknown function DUF2282, transmembrane; KEGG: ppr:PBPRA3515 putative signal peptide protein; hypothetical protein complement(785942..786229) Acidithiobacillus ferrivorans SS3 11041950 YP_004783294.1 CDS Acife_0770 NC_015942.1 786318 786806 R PFAM: DoxX; KEGG: reh:H16_A1816 hypothetical protein; DoxX family protein complement(786318..786806) Acidithiobacillus ferrivorans SS3 11041951 YP_004783295.1 CDS Acife_0771 NC_015942.1 786856 787335 R KEGG: shl:Shal_3553 hypothetical protein; hypothetical protein complement(786856..787335) Acidithiobacillus ferrivorans SS3 11041952 YP_004783296.1 CDS Acife_0772 NC_015942.1 787346 787630 R PFAM: Protein of unknown function DUF2282, transmembrane; KEGG: llo:LLO_1725 hypothetical protein; hypothetical protein complement(787346..787630) Acidithiobacillus ferrivorans SS3 11044074 YP_004783297.1 CDS Acife_0773 NC_015942.1 787808 788509 R hypothetical protein complement(787808..788509) Acidithiobacillus ferrivorans SS3 11041953 YP_004783298.1 CDS Acife_0774 NC_015942.1 788499 788966 R manually curated; PFAM: HTH transcriptional regulator, MerR; KEGG: afr:AFE_2509 transcriptional regulator, MerR family; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator complement(788499..788966) Acidithiobacillus ferrivorans SS3 11041954 YP_004783299.1 CDS Acife_0775 NC_015942.1 788970 789191 R hypothetical protein complement(788970..789191) Acidithiobacillus ferrivorans SS3 11041955 YP_004783300.1 CDS Acife_0780 NC_015942.1 793384 794211 R PFAM: ATPase associated with various cellular activities, AAA-5; CbbQ/NirQ/NorQ C-terminal; KEGG: afr:AFE_2536 CbbQ/NirQ/NorQ/GpvN family protein; ATPase complement(793384..794211) Acidithiobacillus ferrivorans SS3 11041959 YP_004783301.1 CDS Acife_0781 NC_015942.1 794208 794402 R hypothetical protein complement(794208..794402) Acidithiobacillus ferrivorans SS3 11044076 YP_004783302.1 CDS Acife_0782 NC_015942.1 794477 794998 R PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: nmu:Nmul_A2682 thioredoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen complement(794477..794998) Acidithiobacillus ferrivorans SS3 11044077 YP_004783303.1 CDS Acife_0783 NC_015942.1 795049 795642 R PFAM: Phosphoglycerate mutase; KEGG: afr:AFE_0155 phosphoglycerate mutase family protein; phosphoglycerate mutase complement(795049..795642) Acidithiobacillus ferrivorans SS3 11041960 YP_004783304.1 CDS Acife_0784 NC_015942.1 795644 797293 R KEGG: afr:AFE_2924 glucose-6-phosphate isomerase; HAMAP: Phosphoglucose isomerase (PGI); PFAM: Phosphoglucose isomerase (PGI); glucose-6-phosphate isomerase complement(795644..797293) Acidithiobacillus ferrivorans SS3 11044078 YP_004783305.1 CDS Acife_0785 NC_015942.1 797326 798405 R KEGG: pna:Pnap_4495 transaldolase; TIGRFAM: Transaldolase subfamily; PFAM: Transaldolase; transaldolase complement(797326..798405) Acidithiobacillus ferrivorans SS3 11041961 YP_004783306.1 CDS Acife_0787 NC_015942.1 799221 800879 R KEGG: tbd:Tbd_1341 putative mercuric reductase; TIGRFAM: Mercuric reductase MerA; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; mercuric reductase complement(799221..800879) Acidithiobacillus ferrivorans SS3 11041963 YP_004783307.1 CDS Acife_0788 NC_015942.1 800916 801269 R PFAM: Heavy metal transport/detoxification protein; KEGG: pbr:PB2503_12404 mercuric transport protein periplasmic component; heavy metal transport/detoxification protein complement(800916..801269) Acidithiobacillus ferrivorans SS3 11041964 YP_004783308.1 CDS Acife_0789 NC_015942.1 801304 801723 R PFAM: Mercuric transport protein MerT; KEGG: rme:Rmet_6345 mercuric ion transport protein MerT; Mercuric transport protein MerT complement(801304..801723) Acidithiobacillus ferrivorans SS3 11041965 YP_004783309.1 CDS Acife_0792 NC_015942.1 802868 803872 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; KEGG: afr:AFE_3161 D-isomer specific 2-hydroxyacid dehydrogenase family protein; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(802868..803872) Acidithiobacillus ferrivorans SS3 11044079 YP_004783310.1 CDS Acife_0793 NC_015942.1 803895 805190 R TIGRFAM: Enolase; HAMAP: Enolase; KEGG: hna:Hneap_0970 enolase; PFAM: Enolase, C-terminal; Enolase, N-terminal; enolase complement(803895..805190) Acidithiobacillus ferrivorans SS3 11041968 YP_004783311.1 CDS Acife_0794 NC_015942.1 805202 806629 R KEGG: afe:Lferr_1478 pyruvate kinase; TIGRFAM: Pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; pyruvate kinase complement(805202..806629) Acidithiobacillus ferrivorans SS3 11041969 YP_004783312.1 CDS Acife_0795 NC_015942.1 806626 807546 R PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: afr:AFE_1802 aldolase; deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase complement(806626..807546) Acidithiobacillus ferrivorans SS3 11041970 YP_004783313.1 CDS Acife_0796 NC_015942.1 807539 808936 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: afr:AFE_1803 pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(807539..808936) Acidithiobacillus ferrivorans SS3 11041971 YP_004783314.1 CDS Acife_0797 NC_015942.1 808951 811458 R KEGG: hna:Hneap_0971 plasma-membrane proton-efflux P-type ATPase; TIGRFAM: ATPase, P-type, plasma-membrane proton-efflux; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; plasma-membrane proton-efflux P-type ATPase complement(808951..811458) Acidithiobacillus ferrivorans SS3 11041972 YP_004783315.1 CDS Acife_0799 NC_015942.1 811899 813149 R PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; KEGG: afr:AFE_1811 2-oxo acid dehydrogenase, acyltransferase, putative; hypothetical protein complement(811899..813149) Acidithiobacillus ferrivorans SS3 11044080 YP_004783316.1 CDS Acife_0800 NC_015942.1 813146 814138 R PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: afr:AFE_1812 dehydrogenase complex, E1 component, beta subunit, putative; transketolase central region complement(813146..814138) Acidithiobacillus ferrivorans SS3 11041974 YP_004783317.1 CDS Acife_0801 NC_015942.1 814135 815199 R PFAM: Dehydrogenase, E1 component; KEGG: afr:AFE_1813 dehydrogenase complex, E1 component, alpha subunit, putative; dehydrogenase E1 component complement(814135..815199) Acidithiobacillus ferrivorans SS3 11041975 YP_004783318.1 CDS Acife_0802 NC_015942.1 815192 815542 R KEGG: afr:AFE_1814 alkylhydroperoxidase AhpD domain protein; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase like protein complement(815192..815542) Acidithiobacillus ferrivorans SS3 11041976 YP_004783319.1 CDS Acife_0803 NC_015942.1 815696 816460 R KEGG: afr:AFE_1892 hypothetical protein; TIGRFAM: polyphosphate kinase 2; PFAM: Polyphosphate kinase 2; polyphosphate kinase 2 complement(815696..816460) Acidithiobacillus ferrivorans SS3 11044081 YP_004783320.1 CDS Acife_0804 NC_015942.1 816457 817662 R KEGG: afr:AFE_3250 phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; phosphoglycerate kinase complement(816457..817662) Acidithiobacillus ferrivorans SS3 11041977 YP_004783321.1 CDS Acife_0805 NC_015942.1 817678 818694 R KEGG: afr:AFE_3251 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; glyceraldehyde-3-phosphate dehydrogenase, type I complement(817678..818694) Acidithiobacillus ferrivorans SS3 11044082 YP_004783322.1 CDS Acife_0807 NC_015942.1 819854 821920 R KEGG: afr:AFE_2439 copper-translocating P-type ATPase; TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; copper-translocating P-type ATPase complement(819854..821920) Acidithiobacillus ferrivorans SS3 11041978 YP_004783323.1 CDS Acife_0808 NC_015942.1 821936 822232 R hypothetical protein complement(821936..822232) Acidithiobacillus ferrivorans SS3 11044084 YP_004783324.1 CDS Acife_0809 NC_015942.1 822406 823221 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: afe:Lferr_2063 hypothetical protein; cyclopropane-fatty-acyl-phospholipid synthase complement(822406..823221) Acidithiobacillus ferrivorans SS3 11044085 YP_004783325.1 CDS Acife_0810 NC_015942.1 823319 824635 D PFAM: Outer membrane efflux protein; KEGG: afe:Lferr_0170 outer membrane efflux protein; outer membrane efflux protein 823319..824635 Acidithiobacillus ferrivorans SS3 11044086 YP_004783326.1 CDS Acife_0811 NC_015942.1 824632 826068 D KEGG: afr:AFE_2433 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 824632..826068 Acidithiobacillus ferrivorans SS3 11044087 YP_004783327.1 CDS Acife_0812 NC_015942.1 826061 829171 D KEGG: afe:Lferr_0172 CzcA family heavy metal efflux pump; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump 826061..829171 Acidithiobacillus ferrivorans SS3 11041979 YP_004783328.1 CDS Acife_0813 NC_015942.1 829197 829943 D KEGG: afe:Lferr_0173 cytochrome b561; cytochrome b561 829197..829943 Acidithiobacillus ferrivorans SS3 11041980 YP_004783329.1 CDS Acife_0814 NC_015942.1 830071 830433 D KEGG: afe:Lferr_0174 hypothetical protein; hypothetical protein 830071..830433 Acidithiobacillus ferrivorans SS3 11041981 YP_004783330.1 CDS Acife_0815 NC_015942.1 830551 830859 D KEGG: afe:Lferr_2056 hypothetical protein; hypothetical protein 830551..830859 Acidithiobacillus ferrivorans SS3 11041982 YP_004783331.1 CDS Acife_0817 NC_015942.1 831492 831701 D hypothetical protein 831492..831701 Acidithiobacillus ferrivorans SS3 11041984 YP_004783332.1 CDS Acife_0818 NC_015942.1 832160 832363 D KEGG: afe:Lferr_0179 hypothetical protein; hypothetical protein 832160..832363 Acidithiobacillus ferrivorans SS3 11041985 YP_004783333.1 CDS Acife_0822 NC_015942.1 833661 836756 R PFAM: Acriflavin resistance protein; KEGG: afe:Lferr_0183 acriflavin resistance protein; acriflavin resistance protein complement(833661..836756) Acidithiobacillus ferrivorans SS3 11044089 YP_004783334.1 CDS Acife_0823 NC_015942.1 836798 837928 R KEGG: afe:Lferr_0184 hypothetical protein; hypothetical protein complement(836798..837928) Acidithiobacillus ferrivorans SS3 11044090 YP_004783335.1 CDS Acife_0824 NC_015942.1 837925 839385 R PFAM: Outer membrane efflux protein; KEGG: afe:Lferr_0185 outer membrane efflux protein; outer membrane efflux protein complement(837925..839385) Acidithiobacillus ferrivorans SS3 11041988 YP_004783336.1 CDS Acife_0825 NC_015942.1 839392 841398 R KEGG: afe:Lferr_0186 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase complement(839392..841398) Acidithiobacillus ferrivorans SS3 11044091 YP_004783337.1 CDS Acife_0826 NC_015942.1 841428 841808 R KEGG: afe:Lferr_0187 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; regulatory protein ArsR complement(841428..841808) Acidithiobacillus ferrivorans SS3 11041989 YP_004783338.1 CDS Acife_0828 NC_015942.1 842807 844486 D KEGG: afe:Lferr_0144 Tn7-like transposition protein C; Tn7-like transposition protein C 842807..844486 Acidithiobacillus ferrivorans SS3 11041991 YP_004783339.1 CDS Acife_0830 NC_015942.1 845593 847299 D PFAM: Transposase, IS4-like; KEGG: eba:p2A221 transposase; transposase IS4 family protein 845593..847299 Acidithiobacillus ferrivorans SS3 11041992 YP_004783340.1 CDS Acife_0831 NC_015942.1 848014 849687 D KEGG: afe:Lferr_0142 hypothetical protein; hypothetical protein 848014..849687 Acidithiobacillus ferrivorans SS3 11041993 YP_004783341.1 CDS Acife_0832 NC_015942.1 850088 851386 R PFAM: DNA methylase, adenine-specific; KEGG: glo:Glov_3517 N-6 DNA methylase; N-6 DNA methylase complement(850088..851386) Acidithiobacillus ferrivorans SS3 11041994 YP_004783342.1 CDS Acife_0833 NC_015942.1 851388 852200 R KEGG: dvl:Dvul_0856 hypothetical protein; hypothetical protein complement(851388..852200) Acidithiobacillus ferrivorans SS3 11041995 YP_004783343.1 CDS Acife_0834 NC_015942.1 852197 853927 R KEGG: dvl:Dvul_0855 SMC domain-containing protein; SMC domain-containing protein complement(852197..853927) Acidithiobacillus ferrivorans SS3 11041996 YP_004783344.1 CDS Acife_0835 NC_015942.1 853930 855780 R PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: glo:Glov_3515 restriction modification system DNA specificity domain; restriction modification system DNA specificity domain-containing protein complement(853930..855780) Acidithiobacillus ferrivorans SS3 11041997 YP_004783345.1 CDS Acife_0836 NC_015942.1 855897 856142 D KEGG: neu:NE1524 hypothetical protein; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Putative addiction module antidote protein, CC2985; addiction module antidote protein 855897..856142 Acidithiobacillus ferrivorans SS3 11044093 YP_004783346.1 CDS Acife_0837 NC_015942.1 856135 856425 D PFAM: Plasmid stabilisation system; KEGG: bsb:Bresu_1458 plasmid stabilization system; plasmid stabilization system 856135..856425 Acidithiobacillus ferrivorans SS3 11041998 YP_004783347.1 CDS Acife_0838 NC_015942.1 856483 859272 R KEGG: glo:Glov_3512 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; SMART: DEAD-like helicase, N-terminal; type III restriction protein res subunit complement(856483..859272) Acidithiobacillus ferrivorans SS3 11041999 YP_004783348.1 CDS Acife_0839 NC_015942.1 859427 861115 R PFAM: ATPase associated with various cellular activities, AAA-4; KEGG: aaa:Acav_0838 putative transcriptional regulator; putative transcriptional regulator complement(859427..861115) Acidithiobacillus ferrivorans SS3 11044094 YP_004783349.1 CDS Acife_0840 NC_015942.1 861087 861284 R KEGG: bav:BAV0547 hypothetical protein; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory; excisionase family DNA binding domain-containing protein complement(861087..861284) Acidithiobacillus ferrivorans SS3 11042000 YP_004783350.1 CDS Acife_0841 NC_015942.1 861414 862598 R PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_0455 hypothetical protein; major facilitator superfamily protein complement(861414..862598) Acidithiobacillus ferrivorans SS3 11042001 YP_004783351.1 CDS Acife_0842 NC_015942.1 862659 863651 R KEGG: afr:AFE_0457 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta complement(862659..863651) Acidithiobacillus ferrivorans SS3 11042002 YP_004783352.1 CDS Acife_0843 NC_015942.1 863653 864171 R KEGG: afr:AFE_0458 rare lipoprotein B, putative; rare lipoprotein B complement(863653..864171) Acidithiobacillus ferrivorans SS3 11042003 YP_004783353.1 CDS Acife_0844 NC_015942.1 864168 866633 R KEGG: afr:AFE_0459 leucyl-tRNA synthetase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; leucyl-tRNA synthetase complement(864168..866633) Acidithiobacillus ferrivorans SS3 11042004 YP_004783354.1 CDS Acife_0845 NC_015942.1 866703 866822 R hypothetical protein complement(866703..866822) Acidithiobacillus ferrivorans SS3 11042005 YP_004783355.1 CDS Acife_0846 NC_015942.1 866815 867081 R KEGG: eba:ebD102 hypothetical protein; TIGRFAM: Addiction module toxin, Txe/YoeB; Addiction module toxin, RelE/StbE; PFAM: Addiction module toxin, Txe/YoeB; Txe/YoeB family addiction module toxin complement(866815..867081) Acidithiobacillus ferrivorans SS3 11042006 YP_004783356.1 CDS Acife_0847 NC_015942.1 867075 867317 R TIGRFAM: Prevent-host-death protein; KEGG: eba:ebD103 putative antitoxin of toxin-antitoxin stability system; prevent-host-death family protein complement(867075..867317) Acidithiobacillus ferrivorans SS3 11042007 YP_004783357.1 CDS Acife_0848 NC_015942.1 867488 867784 R KEGG: app:CAP2UW1_0321 putative transcriptional regulator; hypothetical protein complement(867488..867784) Acidithiobacillus ferrivorans SS3 11044095 YP_004783358.1 CDS Acife_0849 NC_015942.1 867812 868192 R KEGG: gca:Galf_0854 regulatory protein MarR; regulatory protein MarR complement(867812..868192) Acidithiobacillus ferrivorans SS3 11042008 YP_004783359.1 CDS Acife_0850 NC_015942.1 868189 868602 R KEGG: mag:amb3185 hypothetical protein; hypothetical protein complement(868189..868602) Acidithiobacillus ferrivorans SS3 11042009 YP_004783360.1 CDS Acife_0851 NC_015942.1 868661 869389 D PFAM: Peptidase M15D, vanX D-ala-D-ala dipeptidase; KEGG: afr:AFE_0462 D-alanyl-D-alanine dipeptidase, putative; peptidase M15D vanX D-ala-D-ala dipeptidase 868661..869389 Acidithiobacillus ferrivorans SS3 11044096 YP_004783361.1 CDS Acife_0852 NC_015942.1 869382 870905 R PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: gca:Galf_2119 sulphate transporter; sulfate transporter complement(869382..870905) Acidithiobacillus ferrivorans SS3 11042010 YP_004783362.1 CDS Acife_0853 NC_015942.1 871237 872040 D PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: afr:AFE_0463 formamidopyrimidine-DNA glycosylase, putative; DNA-binding DNA glycosylase/AP lyase, H2TH 871237..872040 Acidithiobacillus ferrivorans SS3 11042011 YP_004783363.1 CDS Acife_0854 NC_015942.1 872053 872502 R SMART: Rhodanese-like; KEGG: afe:Lferr_0624 rhodanese domain-containing protein; rhodanese-like protein complement(872053..872502) Acidithiobacillus ferrivorans SS3 11042012 YP_004783364.1 CDS Acife_0855 NC_015942.1 872783 873946 D KEGG: afr:AFE_0465 cation efflux family protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein; cation diffusion facilitator family transporter 872783..873946 Acidithiobacillus ferrivorans SS3 11042013 YP_004783365.1 CDS Acife_0856 NC_015942.1 874101 875516 D KEGG: afr:AFE_0466 glutamine synthetase, type I; TIGRFAM: Glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp; glutamine synthetase, type I 874101..875516 Acidithiobacillus ferrivorans SS3 11042014 YP_004783366.1 CDS Acife_0857 NC_015942.1 875664 876227 D KEGG: afe:Lferr_0627 hypothetical protein; hypothetical protein 875664..876227 Acidithiobacillus ferrivorans SS3 11042015 YP_004783367.1 CDS Acife_0859 NC_015942.1 876897 877184 D PFAM: Transposase IS3/IS911; KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 876897..877184 Acidithiobacillus ferrivorans SS3 11044097 YP_004783368.1 CDS Acife_0860 NC_015942.1 877181 878065 D KEGG: pna:Pnap_0429 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core; integrase catalytic subunit 877181..878065 Acidithiobacillus ferrivorans SS3 11044098 YP_004783369.1 CDS Acife_0861 NC_015942.1 878395 879096 D KEGG: afr:AFE_0469 protein-L-isoaspartate O-methyltransferase; TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 878395..879096 Acidithiobacillus ferrivorans SS3 11042016 YP_004783370.1 CDS Acife_0862 NC_015942.1 879093 880034 D KEGG: afr:AFE_0470 RNA polymerase sigma-38 factor; TIGRFAM: RNA polymerase sigma factor RpoS, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4; RpoD subfamily RNA polymerase sigma-70 subunit 879093..880034 Acidithiobacillus ferrivorans SS3 11042017 YP_004783371.1 CDS Acife_0863 NC_015942.1 880062 880436 R PFAM: Protein of unknown function DUF498; KEGG: afr:AFE_0471 hypothetical protein; hypothetical protein complement(880062..880436) Acidithiobacillus ferrivorans SS3 11042018 YP_004783372.1 CDS Acife_0864 NC_015942.1 880531 881712 D PFAM: Aminotransferase, class I/II; KEGG: afr:AFE_0472 aminotransferase, class I/II; class I and II aminotransferase 880531..881712 Acidithiobacillus ferrivorans SS3 11044099 YP_004783373.1 CDS Acife_0865 NC_015942.1 881712 883034 D PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; KEGG: afe:Lferr_0633 homoserine dehydrogenase; homoserine dehydrogenase 881712..883034 Acidithiobacillus ferrivorans SS3 11042019 YP_004783374.1 CDS Acife_0866 NC_015942.1 883087 884217 D KEGG: afr:AFE_0474 threonine synthase; TIGRFAM: Threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; threonine synthase 883087..884217 Acidithiobacillus ferrivorans SS3 11042020 YP_004783375.1 CDS Acife_0867 NC_015942.1 884217 885182 D KEGG: afr:AFE_0475 hypothetical protein; hypothetical protein 884217..885182 Acidithiobacillus ferrivorans SS3 11042021 YP_004783376.1 CDS Acife_0868 NC_015942.1 885183 885461 D KEGG: afr:AFE_0476 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 885183..885461 Acidithiobacillus ferrivorans SS3 11042022 YP_004783377.1 CDS Acife_0869 NC_015942.1 885630 886862 D PFAM: Integrase, catalytic core, phage; KEGG: reh:H16_A0820 site-specific recombinase XerD; integrase family protein 885630..886862 Acidithiobacillus ferrivorans SS3 11042023 YP_004783378.1 CDS Acife_0870 NC_015942.1 886867 888852 D KEGG: reh:H16_A0821 hypothetical protein; hypothetical protein 886867..888852 Acidithiobacillus ferrivorans SS3 11042024 YP_004783379.1 CDS Acife_0871 NC_015942.1 888858 891014 D KEGG: reh:H16_A0822 putative phage integrase; putative phage integrase 888858..891014 Acidithiobacillus ferrivorans SS3 11044100 YP_004783380.1 CDS Acife_0872 NC_015942.1 891001 891474 D KEGG: reh:H16_A0823 hypothetical protein; hypothetical protein 891001..891474 Acidithiobacillus ferrivorans SS3 11044101 YP_004783381.1 CDS Acife_0873 NC_015942.1 891474 893291 D PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; KEGG: afr:AFE_0476 single-stranded-DNA-specific exonuclease RecJ; phosphoesterase RecJ domain-containing protein 891474..893291 Acidithiobacillus ferrivorans SS3 11042025 YP_004783382.1 CDS Acife_0874 NC_015942.1 893646 893780 R hypothetical protein complement(893646..893780) Acidithiobacillus ferrivorans SS3 11044102 YP_004783383.1 CDS Acife_0875 NC_015942.1 894331 899682 D KEGG: noc:Noc_0639 hypothetical protein; hypothetical protein 894331..899682 Acidithiobacillus ferrivorans SS3 11042026 YP_004783384.1 CDS Acife_0876 NC_015942.1 899843 900439 R PFAM: Uncharacterised protein family UPF0153; KEGG: xfa:XF2027 hypothetical protein; hypothetical protein complement(899843..900439) Acidithiobacillus ferrivorans SS3 11042027 YP_004783385.1 CDS Acife_0877 NC_015942.1 900720 900854 D hypothetical protein 900720..900854 Acidithiobacillus ferrivorans SS3 11042028 YP_004783386.1 CDS Acife_0878 NC_015942.1 901532 901828 R PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: afr:AFE_2886 PemI family protein; SpoVT/AbrB domain-containing protein complement(901532..901828) Acidithiobacillus ferrivorans SS3 11042029 YP_004783387.1 CDS Acife_0880 NC_015942.1 902161 903024 D KEGG: afr:AFE_3189 hypothetical protein; hypothetical protein 902161..903024 Acidithiobacillus ferrivorans SS3 11042031 YP_004783388.1 CDS Acife_0881 NC_015942.1 903463 906261 D KEGG: afe:Lferr_1287 putative DNA methylase; putative DNA methylase 903463..906261 Acidithiobacillus ferrivorans SS3 11042032 YP_004783389.1 CDS Acife_0882 NC_015942.1 906258 907319 D PFAM: Protein of unknown function DUF1016; KEGG: vei:Veis_1750 hypothetical protein; hypothetical protein 906258..907319 Acidithiobacillus ferrivorans SS3 11042033 YP_004783390.1 CDS Acife_0883 NC_015942.1 907316 909415 D SMART: DEAD-like helicase, N-terminal; KEGG: afe:Lferr_1285 YeeB-like protein; DEAD-like helicase 907316..909415 Acidithiobacillus ferrivorans SS3 11044103 YP_004783391.1 CDS Acife_0884 NC_015942.1 909408 910601 D PFAM: Putative helicase A859L; KEGG: afe:Lferr_1284 YeeC-like protein; helicase A859L 909408..910601 Acidithiobacillus ferrivorans SS3 11044104 YP_004783392.1 CDS Acife_0885 NC_015942.1 910652 910897 D hypothetical protein 910652..910897 Acidithiobacillus ferrivorans SS3 11042034 YP_004783393.1 CDS Acife_0886 NC_015942.1 911295 912383 D PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: afe:Lferr_0188 class V aminotransferase; class V aminotransferase 911295..912383 Acidithiobacillus ferrivorans SS3 11044105 YP_004783394.1 CDS Acife_0888 NC_015942.1 912576 912698 D hypothetical protein 912576..912698 Acidithiobacillus ferrivorans SS3 11042036 YP_004783395.1 CDS Acife_0889 NC_015942.1 912825 913967 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afe:Lferr_0195 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 912825..913967 Acidithiobacillus ferrivorans SS3 11042037 YP_004783396.1 CDS Acife_0890 NC_015942.1 914776 916842 R KEGG: afr:AFE_2439 copper-translocating P-type ATPase; TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; copper-translocating P-type ATPase complement(914776..916842) Acidithiobacillus ferrivorans SS3 11042038 YP_004783397.1 CDS Acife_0893 NC_015942.1 917798 918148 D KEGG: afr:AFE_2435 hypothetical protein; hypothetical protein 917798..918148 Acidithiobacillus ferrivorans SS3 11042040 YP_004783398.1 CDS Acife_0894 NC_015942.1 918242 919558 D PFAM: Outer membrane efflux protein; KEGG: afe:Lferr_0170 outer membrane efflux protein; outer membrane efflux protein 918242..919558 Acidithiobacillus ferrivorans SS3 11042041 YP_004783399.1 CDS Acife_0895 NC_015942.1 919555 920991 D KEGG: afr:AFE_2433 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 919555..920991 Acidithiobacillus ferrivorans SS3 11042042 YP_004783400.1 CDS Acife_0896 NC_015942.1 920984 924094 D KEGG: afe:Lferr_0172 CzcA family heavy metal efflux pump; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump 920984..924094 Acidithiobacillus ferrivorans SS3 11042043 YP_004783401.1 CDS Acife_0897 NC_015942.1 924120 924866 D KEGG: afe:Lferr_0173 cytochrome b561; cytochrome b561 924120..924866 Acidithiobacillus ferrivorans SS3 11042044 YP_004783402.1 CDS Acife_0898 NC_015942.1 924994 925356 D KEGG: afe:Lferr_0174 hypothetical protein; hypothetical protein 924994..925356 Acidithiobacillus ferrivorans SS3 11042045 YP_004783403.1 CDS Acife_0899 NC_015942.1 925474 925782 D KEGG: afe:Lferr_0175 hypothetical protein; hypothetical protein 925474..925782 Acidithiobacillus ferrivorans SS3 11042046 YP_004783404.1 CDS Acife_0901 NC_015942.1 927619 927834 D KEGG: afe:Lferr_0179 hypothetical protein; hypothetical protein 927619..927834 Acidithiobacillus ferrivorans SS3 11044107 YP_004783405.1 CDS Acife_0902 NC_015942.1 928231 929520 D KEGG: cph:Cpha266_2208 hypothetical protein; hypothetical protein 928231..929520 Acidithiobacillus ferrivorans SS3 11042048 YP_004783406.1 CDS Acife_0903 NC_015942.1 929507 930196 D KEGG: cph:Cpha266_2209 hypothetical protein; hypothetical protein 929507..930196 Acidithiobacillus ferrivorans SS3 11042049 YP_004783407.1 CDS Acife_0905 NC_015942.1 930945 932342 D KEGG: nhl:Nhal_1636 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; Fis family sigma-54 specific transcriptional regulator 930945..932342 Acidithiobacillus ferrivorans SS3 11042050 YP_004783408.1 CDS Acife_0906 NC_015942.1 932397 933449 D KEGG: azo:azo3030 hypothetical protein; hypothetical protein 932397..933449 Acidithiobacillus ferrivorans SS3 11042051 YP_004783409.1 CDS Acife_0907 NC_015942.1 933542 934267 R manually curated; KEGG: amv:ACMV_06460 hypothetical protein; hypothetical protein complement(933542..934267) Acidithiobacillus ferrivorans SS3 11044109 YP_004783410.1 CDS Acife_0908 NC_015942.1 934529 934921 R KEGG: afr:AFE_1834 hypothetical protein; hypothetical protein complement(934529..934921) Acidithiobacillus ferrivorans SS3 11042052 YP_004783411.1 CDS Acife_0910 NC_015942.1 935122 935541 R hypothetical protein complement(935122..935541) Acidithiobacillus ferrivorans SS3 11044110 YP_004783412.1 CDS Acife_0911 NC_015942.1 935568 936116 R KEGG: azo:azo3029 hypothetical protein; hypothetical protein complement(935568..936116) Acidithiobacillus ferrivorans SS3 11044111 YP_004783413.1 CDS Acife_0912 NC_015942.1 936148 936861 R PFAM: Peptidase C39, bacteriocin processing; KEGG: ppd:Ppro_2175 peptidase C39, bacteriocin processing; peptidase C39 bacteriocin processing complement(936148..936861) Acidithiobacillus ferrivorans SS3 11042054 YP_004783414.1 CDS Acife_0913 NC_015942.1 936874 937233 R KEGG: rpf:Rpic12D_0335 signal peptide protein; hypothetical protein complement(936874..937233) Acidithiobacillus ferrivorans SS3 11042055 YP_004783415.1 CDS Acife_0914 NC_015942.1 937309 938361 R KEGG: hmg:100209204 similar to predicted protein; hypothetical protein complement(937309..938361) Acidithiobacillus ferrivorans SS3 11044112 YP_004783416.1 CDS Acife_0915 NC_015942.1 938778 941993 R TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: afr:AFE_1707 sensory box-containing diguanylate cyclase, putative; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(938778..941993) Acidithiobacillus ferrivorans SS3 11042056 YP_004783417.1 CDS Acife_0916 NC_015942.1 942063 944222 R PFAM: Glycosyl transferase, family 2; Type IV pilus assembly PilZ; KEGG: bph:Bphy_2377 cellulose synthase; family 2 glycosyl transferase complement(942063..944222) Acidithiobacillus ferrivorans SS3 11042057 YP_004783418.1 CDS Acife_0917 NC_015942.1 944250 945524 R KEGG: mpo:Mpop_0886 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; SMART: Diguanylate phosphodiesterase, predicted; diguanylate phosphodiesterase complement(944250..945524) Acidithiobacillus ferrivorans SS3 11044113 YP_004783419.1 CDS Acife_0919 NC_015942.1 946769 947797 R PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: afr:AFE_3183 ISAfe1, transposase; transposase IS116/IS110/IS902 family protein complement(946769..947797) Acidithiobacillus ferrivorans SS3 11042059 YP_004783420.1 CDS Acife_0921 NC_015942.1 949661 949915 D KEGG: afr:AFE_2495 hypothetical protein; hypothetical protein 949661..949915 Acidithiobacillus ferrivorans SS3 11042060 YP_004783421.1 CDS Acife_0922 NC_015942.1 949996 950406 D manually curated; KEGG: afr:AFE_2494 hypothetical protein; hypothetical protein 949996..950406 Acidithiobacillus ferrivorans SS3 11042061 YP_004783422.1 CDS Acife_0924 NC_015942.1 952518 952991 R PFAM: 4-vinyl reductase, 4VR; KEGG: mfs:MFS40622_1455 4-vinyl reductase 4VR; 4-vinyl reductase 4VR complement(952518..952991) Acidithiobacillus ferrivorans SS3 11042063 YP_004783423.1 CDS Acife_0925 NC_015942.1 953711 954809 D manually curated; KEGG: ade:Adeh_0244 LigA; peptide chain release factor 2 join(953711..953785,953787..954809) Acidithiobacillus ferrivorans SS3 11042064 YP_004783424.1 CDS Acife_0926 NC_015942.1 954846 956336 D TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase; KEGG: afr:AFE_0480 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; Lysyl-tRNA synthetase 954846..956336 Acidithiobacillus ferrivorans SS3 11042065 YP_004783425.1 CDS Acife_0927 NC_015942.1 956333 957577 D KEGG: afr:AFE_0481 lipoprotein releasing system transmembrane protein LolC; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Protein of unknown function DUF214, permase predicted; lipoprotein releasing system, transmembrane protein, LolC/E family 956333..957577 Acidithiobacillus ferrivorans SS3 11042066 YP_004783426.1 CDS Acife_0928 NC_015942.1 957570 958265 D KEGG: afr:AFE_0483 lipoprotein releasing system, ATP-binding protein LolD; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 957570..958265 Acidithiobacillus ferrivorans SS3 11042067 YP_004783427.1 CDS Acife_0929 NC_015942.1 958262 958822 R PFAM: Protein of unknown function DUF2062; KEGG: afr:AFE_0482 hypothetical protein; hypothetical protein complement(958262..958822) Acidithiobacillus ferrivorans SS3 11044115 YP_004783428.1 CDS Acife_0930 NC_015942.1 958903 961017 D KEGG: afr:AFE_0484 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; ComEC/Rec2-like protein 958903..961017 Acidithiobacillus ferrivorans SS3 11042068 YP_004783429.1 CDS Acife_0931 NC_015942.1 961162 961782 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: afr:AFE_0485 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 961162..961782 Acidithiobacillus ferrivorans SS3 11042069 YP_004783430.1 CDS Acife_0932 NC_015942.1 961779 962183 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: afr:AFE_0486 biopolymer transport protein, ExbD/TolR family; biopolymer transport protein ExbD/TolR 961779..962183 Acidithiobacillus ferrivorans SS3 11044116 YP_004783431.1 CDS Acife_0933 NC_015942.1 962214 962873 D PFAM: Protein of unknown function DUF374; KEGG: afe:Lferr_0647 hypothetical protein; hypothetical protein 962214..962873 Acidithiobacillus ferrivorans SS3 11042070 YP_004783432.1 CDS Acife_0934 NC_015942.1 962870 964015 D KEGG: afr:AFE_0488 hypothetical protein; hypothetical protein 962870..964015 Acidithiobacillus ferrivorans SS3 11042071 YP_004783433.1 CDS Acife_0935 NC_015942.1 964012 965010 D TIGRFAM: Tetraacyldisaccharide 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; KEGG: afr:AFE_0489 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase; tetraacyldisaccharide 4'-kinase 964012..965010 Acidithiobacillus ferrivorans SS3 11042072 YP_004783434.1 CDS Acife_0936 NC_015942.1 965010 965192 D KEGG: afr:AFE_0490 hypothetical protein; HAMAP: UPF0434 protein ycaR; PFAM: Protein of unknown function DUF343; hypothetical protein 965010..965192 Acidithiobacillus ferrivorans SS3 11042073 YP_004783435.1 CDS Acife_0937 NC_015942.1 965189 965950 D TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: afr:AFE_0491 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase; 3-deoxy-manno-octulosonate cytidylyltransferase 965189..965950 Acidithiobacillus ferrivorans SS3 11042074 YP_004783436.1 CDS Acife_0938 NC_015942.1 965972 966493 D KEGG: afr:AFE_0492 inorganic pyrophosphatase; HAMAP: Inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase; Inorganic pyrophosphatase 965972..966493 Acidithiobacillus ferrivorans SS3 11042075 YP_004783437.1 CDS Acife_0939 NC_015942.1 966558 966938 D KEGG: afr:AFE_0493 hypothetical protein; hypothetical protein 966558..966938 Acidithiobacillus ferrivorans SS3 11042076 YP_004783438.1 CDS Acife_0941 NC_015942.1 967315 967977 D KEGG: tgr:Tgr7_1787 hypothetical protein; hypothetical protein 967315..967977 Acidithiobacillus ferrivorans SS3 11042077 YP_004783439.1 CDS Acife_0942 NC_015942.1 968275 969363 D hypothetical protein 968275..969363 Acidithiobacillus ferrivorans SS3 11042078 YP_004783440.1 CDS Acife_0943 NC_015942.1 969520 969804 D hypothetical protein 969520..969804 Acidithiobacillus ferrivorans SS3 11042079 YP_004783441.1 CDS Acife_0944 NC_015942.1 970024 970230 D PFAM: Uncharacterised protein family UPF0150; KEGG: app:CAP2UW1_2579 hypothetical protein; hypothetical protein 970024..970230 Acidithiobacillus ferrivorans SS3 11044118 YP_004783442.1 CDS Acife_0945 NC_015942.1 970223 970438 D PFAM: YcfA-like; KEGG: app:CAP2UW1_2578 YcfA family protein; YcfA family protein 970223..970438 Acidithiobacillus ferrivorans SS3 11042080 YP_004783443.1 CDS Acife_0946 NC_015942.1 970532 971074 D PFAM: DinB; KEGG: pfs:PFLU2952 hypothetical protein; DinB family protein 970532..971074 Acidithiobacillus ferrivorans SS3 11042081 YP_004783444.1 CDS Acife_0947 NC_015942.1 971161 971661 D KEGG: afe:Lferr_2023 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 971161..971661 Acidithiobacillus ferrivorans SS3 11042082 YP_004783445.1 CDS Acife_0948 NC_015942.1 971685 972707 D KEGG: sbl:Sbal_4350 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core; integrase catalytic subunit 971685..972707 Acidithiobacillus ferrivorans SS3 11042083 YP_004783446.1 CDS Acife_0949 NC_015942.1 973206 974546 D PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; KEGG: gpb:HDN1F_31110 RNA-directed DNA polymerase; RNA-directed DNA polymerase 973206..974546 Acidithiobacillus ferrivorans SS3 11042084 YP_004783447.1 CDS Acife_0950 NC_015942.1 974655 975266 D KEGG: ccs:CCNA_01785 hypothetical protein; hypothetical protein 974655..975266 Acidithiobacillus ferrivorans SS3 11042085 YP_004783448.1 CDS Acife_0951 NC_015942.1 975344 975553 D PFAM: Uncharacterised protein family UPF0150; KEGG: pph:Ppha_1441 protein of unknown function UPF0150; hypothetical protein 975344..975553 Acidithiobacillus ferrivorans SS3 11042086 YP_004783449.1 CDS Acife_0952 NC_015942.1 975557 975781 D PFAM: YcfA-like; KEGG: cyc:PCC7424_2669 YcfA family protein; YcfA family protein 975557..975781 Acidithiobacillus ferrivorans SS3 11044119 YP_004783450.1 CDS Acife_0954 NC_015942.1 976236 976517 D PFAM: Protein of unknown function DUF1778; KEGG: brh:RBRH_00853 hypothetical protein; hypothetical protein 976236..976517 Acidithiobacillus ferrivorans SS3 11042088 YP_004783451.1 CDS Acife_0955 NC_015942.1 976514 977044 D PFAM: GCN5-related N-acetyltransferase; KEGG: gpb:HDN1F_37230 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 976514..977044 Acidithiobacillus ferrivorans SS3 11044120 YP_004783452.1 CDS Acife_0956 NC_015942.1 977416 978024 D PFAM: Uracil-DNA glycosylase-like; KEGG: afe:Lferr_0676 uracil-DNA glycosylase superfamily; uracil-DNA glycosylase superfamily 977416..978024 Acidithiobacillus ferrivorans SS3 11042089 YP_004783453.1 CDS Acife_0957 NC_015942.1 978093 979568 R KEGG: afr:AFE_0519 hypothetical protein; HAMAP: UPF0061 protein ydiU; PFAM: Uncharacterised protein family UPF0061; hypothetical protein complement(978093..979568) Acidithiobacillus ferrivorans SS3 11042090 YP_004783454.1 CDS Acife_0958 NC_015942.1 979572 981830 R TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: afr:AFE_0520 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core; ATP-dependent Clp protease, ATP-binding subunit clpA complement(979572..981830) Acidithiobacillus ferrivorans SS3 11044121 YP_004783455.1 CDS Acife_0959 NC_015942.1 981834 982142 R manually curated; HAMAP: ATP-dependent Clp protease adapter protein clpS; KEGG: afr:AFE_0521 ATP-dependent Clp protease adaptor protein ClpS; PFAM: Adaptor protein ClpS, core; ATP-dependent Clp protease adapter protein clpS complement(981834..982142) Acidithiobacillus ferrivorans SS3 11042091 YP_004783456.1 CDS Acife_0960 NC_015942.1 982320 983096 R PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: afr:AFE_0522 peptidyl-prolyl cis-trans isomerase, PPIC-type; PpiC-type peptidyl-prolyl cis-trans isomerase complement(982320..983096) Acidithiobacillus ferrivorans SS3 11042092 YP_004783457.1 CDS Acife_0961 NC_015942.1 983161 983727 R KEGG: afr:AFE_0523 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; TIGRFAM: DJ-1; PFAM: ThiJ/PfpI; DJ-1 family protein complement(983161..983727) Acidithiobacillus ferrivorans SS3 11044122 YP_004783458.1 CDS Acife_0962 NC_015942.1 983866 985302 R TIGRFAM: Peptidase S41A, C-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: afr:AFE_0524 carboxy-terminal peptidase; SMART: Peptidase S41; PDZ/DHR/GLGF; carboxyl-terminal protease complement(983866..985302) Acidithiobacillus ferrivorans SS3 11042093 YP_004783459.1 CDS Acife_0963 NC_015942.1 985402 986817 R PFAM: Peptidase M23; KEGG: afr:AFE_0525 M23/M37 peptidase domain protein; peptidase M23 complement(985402..986817) Acidithiobacillus ferrivorans SS3 11042094 YP_004783460.1 CDS Acife_0964 NC_015942.1 986821 988350 R TIGRFAM: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; HAMAP: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: afr:AFE_0526 phosphoglyceromutase; PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase complement(986821..988350) Acidithiobacillus ferrivorans SS3 11044123 YP_004783461.1 CDS Acife_0965 NC_015942.1 988418 990904 R KEGG: afr:AFE_0527 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: Glycogen/starch/alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase complement(988418..990904) Acidithiobacillus ferrivorans SS3 11042095 YP_004783462.1 CDS Acife_0966 NC_015942.1 991047 991499 D PFAM: Host attachment protein; KEGG: afr:AFE_0528 hypothetical protein; Host attachment protein 991047..991499 Acidithiobacillus ferrivorans SS3 11042096 YP_004783463.1 CDS Acife_0967 NC_015942.1 991499 991885 D KEGG: afr:AFE_0529 rhodanese-like domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; rhodanese-like protein 991499..991885 Acidithiobacillus ferrivorans SS3 11044124 YP_004783464.1 CDS Acife_0968 NC_015942.1 991898 992839 R PFAM: Carbohydrate/purine kinase; KEGG: afr:AFE_0530 carbohydrate kinase, PfkB family; PfkB domain-containing protein complement(991898..992839) Acidithiobacillus ferrivorans SS3 11042097 YP_004783465.1 CDS Acife_0969 NC_015942.1 992962 993567 D KEGG: afr:AFE_0531 hypothetical protein; hypothetical protein 992962..993567 Acidithiobacillus ferrivorans SS3 11042098 YP_004783466.1 CDS Acife_0970 NC_015942.1 993709 994878 D TIGRFAM: S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthase; KEGG: afr:AFE_0532 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthase 993709..994878 Acidithiobacillus ferrivorans SS3 11044125 YP_004783467.1 CDS Acife_0971 NC_015942.1 995066 996472 D TIGRFAM: S-adenosyl-L-homocysteine hydrolase; HAMAP: Adenosylhomocysteinase; KEGG: afe:Lferr_0691 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; adenosylhomocysteinase 995066..996472 Acidithiobacillus ferrivorans SS3 11042099 YP_004783468.1 CDS Acife_0972 NC_015942.1 996472 997290 D KEGG: afr:AFE_0535 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 996472..997290 Acidithiobacillus ferrivorans SS3 11042100 YP_004783469.1 CDS Acife_0973 NC_015942.1 997446 998318 D PFAM: Phosphoribulokinase/uridine kinase; KEGG: afr:AFE_0536 phosphoribulokinase; phosphoribulokinase/uridine kinase 997446..998318 Acidithiobacillus ferrivorans SS3 11044126 YP_004783470.1 CDS Acife_0974 NC_015942.1 998527 999534 R PFAM: Sodium/calcium exchanger membrane region; KEGG: afr:AFE_0587 sodium/calcium exchanger; sodium/calcium exchanger membrane region complement(998527..999534) Acidithiobacillus ferrivorans SS3 11042102 YP_004783471.1 CDS Acife_0975 NC_015942.1 999844 1001682 D KEGG: afr:AFE_0589 ATP-dependent RNA helicase, DEAD/DEAH box family; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; DEAD/DEAH box helicase domain-containing protein 999844..1001682 Acidithiobacillus ferrivorans SS3 11042103 YP_004783472.1 CDS Acife_0976 NC_015942.1 1001777 1001980 R KEGG: afr:AFE_0590 cold-shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein complement(1001777..1001980) Acidithiobacillus ferrivorans SS3 11042104 YP_004783473.1 CDS Acife_0977 NC_015942.1 1002083 1004245 R TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; KEGG: afr:AFE_0591 primosomal protein N`; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; primosomal protein N' complement(1002083..1004245) Acidithiobacillus ferrivorans SS3 11042105 YP_004783474.1 CDS Acife_0978 NC_015942.1 1004513 1005415 R TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; HAMAP: 4-hydroxybenzoate octaprenyltransferase; KEGG: afr:AFE_0592 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; 4-hydroxybenzoate octaprenyltransferase complement(1004513..1005415) Acidithiobacillus ferrivorans SS3 11042106 YP_004783475.1 CDS Acife_0979 NC_015942.1 1005415 1005993 R PFAM: Chorismate--pyruvate lyase; KEGG: afe:Lferr_0745 chorismate lyase; chorismate lyase complement(1005415..1005993) Acidithiobacillus ferrivorans SS3 11044127 YP_004783476.1 CDS Acife_0980 NC_015942.1 1006028 1006612 R KEGG: afr:AFE_0594 phosphatidylethanolamine N-methyltransferase, putative; phosphatidylethanolamine N-methyltransferase complement(1006028..1006612) Acidithiobacillus ferrivorans SS3 11042107 YP_004783477.1 CDS Acife_0981 NC_015942.1 1006773 1007153 D KEGG: afr:AFE_0595 lipoprotein, putative; lipoprotein 1006773..1007153 Acidithiobacillus ferrivorans SS3 11044128 YP_004783478.1 CDS Acife_0982 NC_015942.1 1007238 1008593 D SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: tRNA-i(6)A37 modification enzyme MiaB; Methylthiotransferase; KEGG: afr:AFE_0596 (dimethylallyl)adenosine tRNA methylthiotransferase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; (dimethylallyl)adenosine tRNA methylthiotransferase MiaB 1007238..1008593 Acidithiobacillus ferrivorans SS3 11044129 YP_004783479.1 CDS Acife_0983 NC_015942.1 1008598 1009581 D PFAM: PhoH-like protein; KEGG: afr:AFE_0597 PhoH-like protein; PhoH family protein 1008598..1009581 Acidithiobacillus ferrivorans SS3 11042108 YP_004783480.1 CDS Acife_0984 NC_015942.1 1009578 1010075 D TIGRFAM: Uncharacterised protein family UPF0054; HAMAP: Uncharacterised protein family UPF0054; KEGG: afe:Lferr_0750 hypothetical protein; PFAM: Uncharacterised protein family UPF0054; metalloprotease ybeY 1009578..1010075 Acidithiobacillus ferrivorans SS3 11044130 YP_004783481.1 CDS Acife_0985 NC_015942.1 1010068 1010952 D KEGG: afe:Lferr_0751 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; Transporter-associated region; SMART: Cystathionine beta-synthase, core; CBS domain-containing protein 1010068..1010952 Acidithiobacillus ferrivorans SS3 11042109 YP_004783482.1 CDS Acife_0986 NC_015942.1 1010949 1012469 D TIGRFAM: Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; KEGG: afe:Lferr_0752 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Apolipoprotein N-acyltransferase 1010949..1012469 Acidithiobacillus ferrivorans SS3 11042110 YP_004783483.1 CDS Acife_0987 NC_015942.1 1012438 1013784 R PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: afr:AFE_0600 PmbA protein; peptidase U62 modulator of DNA gyrase complement(1012438..1013784) Acidithiobacillus ferrivorans SS3 11042111 YP_004783484.1 CDS Acife_0988 NC_015942.1 1013957 1015006 D PFAM: ABC transporter metal-binding lipoprotein; KEGG: afe:Lferr_0754 periplasmic solute-binding protein; metal ABC transporter substrate-binding protein 1013957..1015006 Acidithiobacillus ferrivorans SS3 11042112 YP_004783485.1 CDS Acife_0989 NC_015942.1 1015020 1015844 D KEGG: afr:AFE_0603 cation ABC transporter, ATP-binding protein, putative; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 1015020..1015844 Acidithiobacillus ferrivorans SS3 11042113 YP_004783486.1 CDS Acife_0990 NC_015942.1 1015849 1016754 D PFAM: ABC-3; KEGG: afe:Lferr_0756 ABC-3 protein; ABC transporter permease 1015849..1016754 Acidithiobacillus ferrivorans SS3 11042114 YP_004783487.1 CDS Acife_0991 NC_015942.1 1016758 1017567 D PFAM: ABC-3; KEGG: afr:AFE_0605 cation ABC transporter, permease protein, putative; ABC transporter permease 1016758..1017567 Acidithiobacillus ferrivorans SS3 11042115 YP_004783488.1 CDS Acife_0992 NC_015942.1 1017601 1018782 R KEGG: afr:AFE_0606 hypothetical protein; hypothetical protein complement(1017601..1018782) Acidithiobacillus ferrivorans SS3 11044131 YP_004783489.1 CDS Acife_0993 NC_015942.1 1018775 1019629 R KEGG: afr:AFE_0607 hypothetical protein; hypothetical protein complement(1018775..1019629) Acidithiobacillus ferrivorans SS3 11042116 YP_004783490.1 CDS Acife_0994 NC_015942.1 1019849 1020862 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: afr:AFE_0609 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase complement(1019849..1020862) Acidithiobacillus ferrivorans SS3 11042117 YP_004783491.1 CDS Acife_0995 NC_015942.1 1020859 1021104 R KEGG: afr:AFE_0610 hypothetical protein; hypothetical protein complement(1020859..1021104) Acidithiobacillus ferrivorans SS3 11042118 YP_004783492.1 CDS Acife_0996 NC_015942.1 1021176 1022396 R KEGG: afr:AFE_0611 hypothetical protein; hypothetical protein complement(1021176..1022396) Acidithiobacillus ferrivorans SS3 11042119 YP_004783493.1 CDS Acife_0997 NC_015942.1 1022389 1023243 R KEGG: afr:AFE_0607 hypothetical protein; hypothetical protein complement(1022389..1023243) Acidithiobacillus ferrivorans SS3 11042120 YP_004783494.1 CDS Acife_0998 NC_015942.1 1023550 1023888 D KEGG: afe:Lferr_0764 hypothetical protein; hypothetical protein 1023550..1023888 Acidithiobacillus ferrivorans SS3 11042121 YP_004783495.1 CDS Acife_0999 NC_015942.1 1023888 1025306 D PFAM: Glycosyl transferase, family 28, C-terminal; KEGG: afe:Lferr_0765 glycosyl transferase-like protein; glycosyl transferase family protein 1023888..1025306 Acidithiobacillus ferrivorans SS3 11044132 YP_004783496.1 CDS Acife_1000 NC_015942.1 1025303 1026565 D PFAM: Glycosyl transferase, group 1; KEGG: afr:AFE_0615 glycosyl transferase, group 1; group 1 glycosyl transferase 1025303..1026565 Acidithiobacillus ferrivorans SS3 11042122 YP_004783497.1 CDS Acife_1001 NC_015942.1 1026562 1027806 D KEGG: afr:AFE_0616 glycosyltransferase, group 1; manually curated; PFAM: Glycosyl transferase, group 1; group 1 glycosyl transferase 1026562..1027806 Acidithiobacillus ferrivorans SS3 11042123 YP_004783498.1 CDS Acife_1002 NC_015942.1 1027806 1029635 D KEGG: afr:AFE_0617 ABC transporter, permease/ATP-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region; SMART: ATPase, AAA+ type, core; ABC transporter 1027806..1029635 Acidithiobacillus ferrivorans SS3 11042124 YP_004783499.1 CDS Acife_1003 NC_015942.1 1029632 1030936 D KEGG: afr:AFE_0618 UDP-glucose/GDP-mannose dehydrogenase family protein; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; nucleotide sugar dehydrogenase 1029632..1030936 Acidithiobacillus ferrivorans SS3 11042125 YP_004783500.1 CDS Acife_1004 NC_015942.1 1030976 1031818 D KEGG: afr:AFE_0619 hypothetical protein; hypothetical protein 1030976..1031818 Acidithiobacillus ferrivorans SS3 11042126 YP_004783501.1 CDS Acife_1005 NC_015942.1 1031830 1032468 D KEGG: afr:AFE_0621 phosphoglycerate mutase family protein; TIGRFAM: Alpha-ribazole phosphatase, CobC; PFAM: Phosphoglycerate mutase; alpha-ribazole phosphatase 1031830..1032468 Acidithiobacillus ferrivorans SS3 11042127 YP_004783502.1 CDS Acife_1006 NC_015942.1 1032465 1033250 R KEGG: afr:AFE_0620 hypothetical protein; hypothetical protein complement(1032465..1033250) Acidithiobacillus ferrivorans SS3 11042128 YP_004783503.1 CDS Acife_1007 NC_015942.1 1033416 1034201 R KEGG: afr:AFE_0622 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein complement(1033416..1034201) Acidithiobacillus ferrivorans SS3 11044133 YP_004783504.1 CDS Acife_1008 NC_015942.1 1034333 1035133 D PFAM: Methyltransferase type 11; KEGG: afr:AFE_0623 methyltransferase, UbiE/COQ5 family; type 11 methyltransferase 1034333..1035133 Acidithiobacillus ferrivorans SS3 11042129 YP_004783505.1 CDS Acife_1009 NC_015942.1 1035145 1036557 D TIGRFAM: 3-isopropylmalate dehydratase, large subunit region; HAMAP: 3-isopropylmalate dehydratase, large subunit region; KEGG: afr:AFE_0624 isopropylmalate isomerase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; 3-isopropylmalate dehydratase large subunit 1035145..1036557 Acidithiobacillus ferrivorans SS3 11042130 YP_004783506.1 CDS Acife_1010 NC_015942.1 1036705 1037352 D TIGRFAM: 3-isopropylmalate dehydratase, small subunit region; HAMAP: 3-isopropylmalate dehydratase, small subunit region; KEGG: afr:AFE_0626 isopropylmalate isomerase small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; 3-isopropylmalate dehydratase small subunit 1036705..1037352 Acidithiobacillus ferrivorans SS3 11042131 YP_004783507.1 CDS Acife_1011 NC_015942.1 1037349 1037660 D KEGG: afr:AFE_0627 hypothetical protein; hypothetical protein 1037349..1037660 Acidithiobacillus ferrivorans SS3 11042132 YP_004783508.1 CDS Acife_1012 NC_015942.1 1037670 1038326 R TIGRFAM: Pyridoxamine 5'-phosphate oxidase; HAMAP: Pyridoxamine 5'-phosphate oxidase; KEGG: afr:AFE_0628 pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; pyridoxine/pyridoxamine 5'-phosphate oxidase complement(1037670..1038326) Acidithiobacillus ferrivorans SS3 11044134 YP_004783509.1 CDS Acife_1013 NC_015942.1 1038354 1039754 R TIGRFAM: Ribose 5-phosphate isomerase; HAMAP: Ribose-5-phosphate isomerase, subgroup; KEGG: afr:AFE_0629 ribose 5-phosphate isomerase A; PFAM: Ribose 5-phosphate isomerase; ThiJ/PfpI; ribose-5-phosphate isomerase A complement(1038354..1039754) Acidithiobacillus ferrivorans SS3 11042133 YP_004783510.1 CDS Acife_1014 NC_015942.1 1040299 1040622 D hypothetical protein 1040299..1040622 Acidithiobacillus ferrivorans SS3 11042134 YP_004783511.1 CDS Acife_1015 NC_015942.1 1040623 1041588 D PFAM: Cytochrome c oxidase subunit II C-terminal; KEGG: afr:AFE_0631 cytochrome o ubiquinol oxidase, subunit II; cytochrome c oxidase subunit II 1040623..1041588 Acidithiobacillus ferrivorans SS3 11042135 YP_004783512.1 CDS Acife_1016 NC_015942.1 1041607 1043640 D PFAM: Cytochrome c oxidase, subunit I; KEGG: afe:Lferr_0782 cytochrome-c oxidase; cytochrome c oxidase subunit I 1041607..1043640 Acidithiobacillus ferrivorans SS3 11042136 YP_004783513.1 CDS Acife_1017 NC_015942.1 1043825 1044460 D PFAM: Cytochrome c oxidase, subunit III; KEGG: afr:AFE_0633 cytochrome o ubiquinol oxidase, subunit III; cytochrome c oxidase subunit III 1043825..1044460 Acidithiobacillus ferrivorans SS3 11042137 YP_004783514.1 CDS Acife_1018 NC_015942.1 1044457 1044822 D KEGG: afr:AFE_0634 cytochrome o ubiquinol oxidase, subunit IV; cytochrome o ubiquinol oxidase subunit IV 1044457..1044822 Acidithiobacillus ferrivorans SS3 11042138 YP_004783515.1 CDS Acife_1020 NC_015942.1 1045123 1046067 D TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: afr:AFE_3143 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; protoheme IX farnesyltransferase 1045123..1046067 Acidithiobacillus ferrivorans SS3 11042139 YP_004783516.1 CDS Acife_1021 NC_015942.1 1046108 1046248 D hypothetical protein 1046108..1046248 Acidithiobacillus ferrivorans SS3 11044136 YP_004783517.1 CDS Acife_1022 NC_015942.1 1046255 1047085 R KEGG: afr:AFE_0636 undecaprenyl pyrophosphate phosphatase; HAMAP: Undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; UDP-diphosphatase complement(1046255..1047085) Acidithiobacillus ferrivorans SS3 11044137 YP_004783518.1 CDS Acife_1023 NC_015942.1 1047097 1047573 R TIGRFAM: Prokaryotic transcription elongation factor GreA; HAMAP: Transcription elongation factor greA; KEGG: afr:AFE_0638 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic; transcription elongation factor GreA complement(1047097..1047573) Acidithiobacillus ferrivorans SS3 11042140 YP_004783519.1 CDS Acife_1024 NC_015942.1 1047576 1050809 R KEGG: afr:AFE_0639 carbamoyl-phosphate synthase, large subunit; TIGRFAM: Carbamoyl phosphate synthase, large subunit, glutamine-dependent; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Carbamoyl phosphate synthetase, large subunit, oligomerisation; MGS-like; carbamoyl-phosphate synthase large subunit complement(1047576..1050809) Acidithiobacillus ferrivorans SS3 11042141 YP_004783520.1 CDS Acife_1025 NC_015942.1 1050802 1051944 R KEGG: afr:AFE_0640 carbamoyl-phosphate synthase, small subunit; TIGRFAM: Carbamoyl phosphate synthase, small subunit; PFAM: Carbamoyl phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; carbamoyl-phosphate synthase small subunit complement(1050802..1051944) Acidithiobacillus ferrivorans SS3 11044138 YP_004783521.1 CDS Acife_1026 NC_015942.1 1052181 1052867 D KEGG: afr:AFE_0641 hypothetical protein; hypothetical protein 1052181..1052867 Acidithiobacillus ferrivorans SS3 11042142 YP_004783522.1 CDS Acife_1027 NC_015942.1 1053145 1053825 D KEGG: afr:AFE_0956 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 1053145..1053825 Acidithiobacillus ferrivorans SS3 11042143 YP_004783523.1 CDS Acife_1028 NC_015942.1 1053880 1054851 D PFAM: Cytochrome c oxidase subunit II C-terminal; KEGG: afr:AFE_0631 cytochrome o ubiquinol oxidase, subunit II; cytochrome c oxidase subunit II 1053880..1054851 Acidithiobacillus ferrivorans SS3 11044139 YP_004783524.1 CDS Acife_1029 NC_015942.1 1054853 1057000 D PFAM: Cytochrome c oxidase, subunit I; KEGG: afe:Lferr_0782 cytochrome-c oxidase; cytochrome c oxidase subunit I 1054853..1057000 Acidithiobacillus ferrivorans SS3 11042144 YP_004783525.1 CDS Acife_1030 NC_015942.1 1057072 1057710 D PFAM: Cytochrome c oxidase, subunit III; KEGG: afr:AFE_0633 cytochrome o ubiquinol oxidase, subunit III; cytochrome c oxidase subunit III 1057072..1057710 Acidithiobacillus ferrivorans SS3 11042145 YP_004783526.1 CDS Acife_1031 NC_015942.1 1057707 1058093 D KEGG: afr:AFE_0634 cytochrome o ubiquinol oxidase, subunit IV; cytochrome o ubiquinol oxidase subunit IV 1057707..1058093 Acidithiobacillus ferrivorans SS3 11042146 YP_004783527.1 CDS Acife_1032 NC_015942.1 1058186 1058443 D hypothetical protein 1058186..1058443 Acidithiobacillus ferrivorans SS3 11042147 YP_004783528.1 CDS Acife_1033 NC_015942.1 1058758 1059342 D KEGG: afr:AFE_2246 DsbG domain protein; DsbG domain-containing protein 1058758..1059342 Acidithiobacillus ferrivorans SS3 11042148 YP_004783529.1 CDS Acife_1034 NC_015942.1 1059360 1060367 R KEGG: hya:HY04AAS1_0222 hypothetical protein; hypothetical protein complement(1059360..1060367) Acidithiobacillus ferrivorans SS3 11042149 YP_004783530.1 CDS Acife_1036 NC_015942.1 1061054 1062346 D PFAM: Integrase, catalytic core, phage; KEGG: sli:Slin_1967 integrase family protein; integrase family protein 1061054..1062346 Acidithiobacillus ferrivorans SS3 11042150 YP_004783531.1 CDS Acife_1037 NC_015942.1 1062480 1062800 D KEGG: noc:Noc_0284 hypothetical protein; hypothetical protein 1062480..1062800 Acidithiobacillus ferrivorans SS3 11044141 YP_004783532.1 CDS Acife_1038 NC_015942.1 1062787 1063098 D KEGG: noc:Noc_0283 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; XRE family transcriptional regulator 1062787..1063098 Acidithiobacillus ferrivorans SS3 11044142 YP_004783533.1 CDS Acife_1039 NC_015942.1 1063208 1064074 D hypothetical protein 1063208..1064074 Acidithiobacillus ferrivorans SS3 11042151 YP_004783534.1 CDS Acife_1040 NC_015942.1 1064238 1064435 D hypothetical protein 1064238..1064435 Acidithiobacillus ferrivorans SS3 11044143 YP_004783535.1 CDS Acife_1041 NC_015942.1 1064432 1064638 D hypothetical protein 1064432..1064638 Acidithiobacillus ferrivorans SS3 11042152 YP_004783536.1 CDS Acife_1042 NC_015942.1 1064635 1065573 D KEGG: alv:Alvin_1702 hypothetical protein; hypothetical protein 1064635..1065573 Acidithiobacillus ferrivorans SS3 11042153 YP_004783537.1 CDS Acife_1043 NC_015942.1 1065573 1066925 D KEGG: nwi:Nwi_1258 hypothetical protein; hypothetical protein 1065573..1066925 Acidithiobacillus ferrivorans SS3 11042154 YP_004783538.1 CDS Acife_1044 NC_015942.1 1067026 1067997 R SMART: ATPase, AAA+ type, core; KEGG: psp:PSPPH_B0059 ExeA-like protein; AAA ATPase complement(1067026..1067997) Acidithiobacillus ferrivorans SS3 11042155 YP_004783539.1 CDS Acife_1045 NC_015942.1 1067987 1069651 R PFAM: Integrase, catalytic core; KEGG: psp:PSPPH_B0058 phage integrase family site specific recombinase; integrase catalytic subunit complement(1067987..1069651) Acidithiobacillus ferrivorans SS3 11042156 YP_004783540.1 CDS Acife_1046 NC_015942.1 1069632 1070207 R PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix region; KEGG: psp:PSPPH_B0057 resolvase, putative; resolvase domain-containing protein complement(1069632..1070207) Acidithiobacillus ferrivorans SS3 11042157 YP_004783541.1 CDS Acife_1047 NC_015942.1 1070480 1071115 D KEGG: cph:Cpha266_2066 hypothetical protein; hypothetical protein 1070480..1071115 Acidithiobacillus ferrivorans SS3 11044144 YP_004783542.1 CDS Acife_1048 NC_015942.1 1071117 1071551 D hypothetical protein 1071117..1071551 Acidithiobacillus ferrivorans SS3 11042158 YP_004783543.1 CDS Acife_1049 NC_015942.1 1071544 1071744 D hypothetical protein 1071544..1071744 Acidithiobacillus ferrivorans SS3 11044145 YP_004783544.1 CDS Acife_1050 NC_015942.1 1071741 1071974 D hypothetical protein 1071741..1071974 Acidithiobacillus ferrivorans SS3 11044146 YP_004783545.1 CDS Acife_1051 NC_015942.1 1072132 1072782 D KEGG: rso:RSc2475 hypothetical protein; hypothetical protein 1072132..1072782 Acidithiobacillus ferrivorans SS3 11042159 YP_004783546.1 CDS Acife_1052 NC_015942.1 1073509 1073865 R KEGG: afr:AFE_2325 hypothetical protein; hypothetical protein complement(1073509..1073865) Acidithiobacillus ferrivorans SS3 11044147 YP_004783547.1 CDS Acife_1053 NC_015942.1 1073881 1075512 R PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; KEGG: afr:AFE_2324 phosphoglucomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I complement(1073881..1075512) Acidithiobacillus ferrivorans SS3 11042161 YP_004783548.1 CDS Acife_1054 NC_015942.1 1075521 1075790 R KEGG: sus:Acid_7627 plasmid related protein; plasmid-like protein complement(1075521..1075790) Acidithiobacillus ferrivorans SS3 11042162 YP_004783549.1 CDS Acife_1055 NC_015942.1 1075833 1076723 R KEGG: afr:AFE_2323 hypothetical protein; hypothetical protein complement(1075833..1076723) Acidithiobacillus ferrivorans SS3 11042163 YP_004783550.1 CDS Acife_1056 NC_015942.1 1076745 1077707 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: afe:Lferr_1961 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1076745..1077707) Acidithiobacillus ferrivorans SS3 11042164 YP_004783551.1 CDS Acife_1057 NC_015942.1 1077707 1078792 R PFAM: Luciferase-like, subgroup; KEGG: afr:AFE_2321 monooxygenase, luciferase-like protein; Luciferase-like, subgroup complement(1077707..1078792) Acidithiobacillus ferrivorans SS3 11042165 YP_004783552.1 CDS Acife_1058 NC_015942.1 1078950 1079522 R HAMAP: Oligoribonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: afr:AFE_2320 oligoribonuclease Orn; SMART: Exonuclease; oligoribonuclease complement(1078950..1079522) Acidithiobacillus ferrivorans SS3 11042166 YP_004783553.1 CDS Acife_1059 NC_015942.1 1079789 1080472 D KEGG: afr:AFE_2319 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; two component winged helix family transcriptional regulator 1079789..1080472 Acidithiobacillus ferrivorans SS3 11042167 YP_004783554.1 CDS Acife_1060 NC_015942.1 1080469 1081764 D KEGG: afe:Lferr_1957 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; integral membrane sensor signal transduction histidine kinase 1080469..1081764 Acidithiobacillus ferrivorans SS3 11042168 YP_004783555.1 CDS Acife_1061 NC_015942.1 1081979 1082524 D PFAM: Outer membrane lipoprotein Slp; KEGG: afr:AFE_2316 outer membrane lipoprotein Slp, putative; outer membrane lipoprotein Slp 1081979..1082524 Acidithiobacillus ferrivorans SS3 11042169 YP_004783556.1 CDS Acife_1062 NC_015942.1 1082755 1083270 D KEGG: afr:AFE_2272 hypothetical protein; hypothetical protein 1082755..1083270 Acidithiobacillus ferrivorans SS3 11042171 YP_004783557.1 CDS Acife_1063 NC_015942.1 1083450 1084133 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: afr:AFE_2270 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 1083450..1084133 Acidithiobacillus ferrivorans SS3 11042172 YP_004783558.1 CDS Acife_1064 NC_015942.1 1084133 1084534 D PFAM: Biopolymer transport protein ExbD/TolR; KEGG: afr:AFE_2269 biopolymer transport protein, ExbD/TolR family; biopolymer transport protein ExbD/TolR 1084133..1084534 Acidithiobacillus ferrivorans SS3 11044148 YP_004783559.1 CDS Acife_1065 NC_015942.1 1084644 1085375 D KEGG: afr:AFE_2268 TonB family protein; manually curated; TIGRFAM: TonB, C-terminal; TonB family protein 1084644..1085375 Acidithiobacillus ferrivorans SS3 11042173 YP_004783560.1 CDS Acife_1066 NC_015942.1 1085421 1086992 D PFAM: Phosphoesterase; KEGG: afr:AFE_2267 phosphoesterase family protein; phosphoesterase 1085421..1086992 Acidithiobacillus ferrivorans SS3 11044149 YP_004783561.1 CDS Acife_1068 NC_015942.1 1087730 1088821 R TIGRFAM: Dihydroorotate dehydrogenase, class 2; HAMAP: Dihydroorotate dehydrogenase; KEGG: afr:AFE_2264 dihydroorotate dehydrogenase; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; dihydroorotate dehydrogenase complement(1087730..1088821) Acidithiobacillus ferrivorans SS3 11042175 YP_004783562.1 CDS Acife_1069 NC_015942.1 1088818 1089708 R KEGG: afr:AFE_2263 coproporphyrinogen III oxidase; HAMAP: Coproporphyrinogen-III oxidase, aerobic; PFAM: Coproporphyrinogen III oxidase; coproporphyrinogen-III oxidase, aerobic complement(1088818..1089708) Acidithiobacillus ferrivorans SS3 11044150 YP_004783563.1 CDS Acife_1070 NC_015942.1 1089713 1090273 R KEGG: afr:AFE_2262 SUA5/YciO/YrdC family protein; HAMAP: ribosome maturation factor rimN; PFAM: Sua5/YciO/YrdC, N-terminal; ribosome maturation factor rimN complement(1089713..1090273) Acidithiobacillus ferrivorans SS3 11042176 YP_004783564.1 CDS Acife_1071 NC_015942.1 1090289 1091551 R TIGRFAM: Phosphoribosylglycinamide synthetase; HAMAP: Phosphoribosylglycinamide synthetase; KEGG: afr:AFE_2261 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; phosphoribosylamine--glycine ligase complement(1090289..1091551) Acidithiobacillus ferrivorans SS3 11044151 YP_004783565.1 CDS Acife_1072 NC_015942.1 1091565 1093130 R SMART: AICARFT/IMPCHase bienzyme, formylation region; TIGRFAM: AICARFT/IMPCHase bienzyme; KEGG: afr:AFE_2260 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; HAMAP: Bifunctional purine biosynthesis protein purH; PFAM: AICARFT/IMPCHase bienzyme, formylation region; MGS-like; bifunctional purine biosynthesis protein purH complement(1091565..1093130) Acidithiobacillus ferrivorans SS3 11042177 YP_004783566.1 CDS Acife_1073 NC_015942.1 1093515 1094306 D KEGG: afr:AFE_2256 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 1093515..1094306 Acidithiobacillus ferrivorans SS3 11042178 YP_004783567.1 CDS Acife_1074 NC_015942.1 1094319 1094687 D KEGG: afe:Lferr_1902 hypothetical protein; hypothetical protein 1094319..1094687 Acidithiobacillus ferrivorans SS3 11042179 YP_004783568.1 CDS Acife_1075 NC_015942.1 1094714 1095334 R TIGRFAM: Potassium transporting ATPase, C subunit; HAMAP: Potassium transporting ATPase, C subunit; KEGG: afr:AFE_2473 K+-transporting ATPase, C subunit; PFAM: Potassium transporting ATPase, C subunit; potassium-transporting ATPase subunit C complement(1094714..1095334) Acidithiobacillus ferrivorans SS3 11042180 YP_004783569.1 CDS Acife_1076 NC_015942.1 1095347 1097416 R TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; HAMAP: Potassium-transporting ATPase, B chain; KEGG: afr:AFE_2474 K+-transporting ATPase, B subunit; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; potassium-transporting ATPase subunit B complement(1095347..1097416) Acidithiobacillus ferrivorans SS3 11042181 YP_004783570.1 CDS Acife_1077 NC_015942.1 1097429 1099180 R TIGRFAM: ATPase, K+ transporting, A subunit; HAMAP: ATPase, K+ transporting, A subunit; KEGG: afr:AFE_2475 K+-transporting ATPase, A subunit; PFAM: ATPase, K+ transporting, A subunit; potassium-transporting ATPase subunit A complement(1097429..1099180) Acidithiobacillus ferrivorans SS3 11044152 YP_004783571.1 CDS Acife_1078 NC_015942.1 1099177 1099269 R TIGRFAM: ATPase, P-type, K+-transporting, F subunit; KEGG: afr:AFE_2231 K+-transporting ATPase, F subunit; K+-transporting ATPase subunit F complement(1099177..1099269) Acidithiobacillus ferrivorans SS3 11042182 YP_004783572.1 CDS Acife_1079 NC_015942.1 1099266 1099358 R KEGG: afr:AFE_2230 hypothetical protein; hypothetical protein complement(1099266..1099358) Acidithiobacillus ferrivorans SS3 11042183 YP_004783573.1 CDS Acife_1080 NC_015942.1 1099630 1102371 D KEGG: afr:AFE_2229 sensor histidine kinase KdpD; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; UspA; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; osmosensitive K+ channel signal transduction histidine kinase 1099630..1102371 Acidithiobacillus ferrivorans SS3 11042184 YP_004783574.1 CDS Acife_1081 NC_015942.1 1102375 1103118 D KEGG: afr:AFE_2228 DNA-binding response regulator KdpE; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; two component winged helix family transcriptional regulator 1102375..1103118 Acidithiobacillus ferrivorans SS3 11042185 YP_004783575.1 CDS Acife_1082 NC_015942.1 1103172 1103918 R PFAM: Haloacid dehalogenase-like hydrolase; KEGG: afe:Lferr_1882 haloacid dehalogenase domain-containing protein hydrolase; haloacid dehalogenase domain-containing protein hydrolase complement(1103172..1103918) Acidithiobacillus ferrivorans SS3 11044153 YP_004783576.1 CDS Acife_1083 NC_015942.1 1103923 1104921 R PFAM: Aminoglycoside phosphotransferase; KEGG: afr:AFE_2226 hypothetical protein; aminoglycoside phosphotransferase complement(1103923..1104921) Acidithiobacillus ferrivorans SS3 11042186 YP_004783577.1 CDS Acife_1084 NC_015942.1 1104940 1105572 R KEGG: afe:Lferr_1880 hypothetical protein; hypothetical protein complement(1104940..1105572) Acidithiobacillus ferrivorans SS3 11042187 YP_004783578.1 CDS Acife_1085 NC_015942.1 1105628 1107226 D PFAM: Amino acid permease-associated region; KEGG: afr:AFE_2457 amino acid permease family protein; amino acid permease-associated protein 1105628..1107226 Acidithiobacillus ferrivorans SS3 11044154 YP_004783579.1 CDS Acife_1087 NC_015942.1 1107403 1107501 R hypothetical protein complement(1107403..1107501) Acidithiobacillus ferrivorans SS3 11044155 YP_004783580.1 CDS Acife_1088 NC_015942.1 1107625 1110339 R TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: tin:Tint_2563 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase complement(1107625..1110339) Acidithiobacillus ferrivorans SS3 11042189 YP_004783581.1 CDS Acife_1089 NC_015942.1 1110601 1113090 R PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; KEGG: afr:AFE_2223 penicillin-binding protein 1A, putative; glycosyl transferase family protein complement(1110601..1113090) Acidithiobacillus ferrivorans SS3 11042190 YP_004783582.1 CDS Acife_1090 NC_015942.1 1113191 1114615 D KEGG: afr:AFE_2222 glutamyl-tRNA synthetase; TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-tRNA synthetase 1113191..1114615 Acidithiobacillus ferrivorans SS3 11042191 YP_004783583.1 CDS Acife_1091 NC_015942.1 1114636 1116024 D KEGG: afr:AFE_2221 cysteinyl-tRNA synthetase; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR; cysteinyl-tRNA synthetase 1114636..1116024 Acidithiobacillus ferrivorans SS3 11042192 YP_004783584.1 CDS Acife_1092 NC_015942.1 1116067 1118376 R KEGG: afr:AFE_2220 ribonuclease, Rne/Rng family; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain; Rne/Rng family ribonuclease complement(1116067..1118376) Acidithiobacillus ferrivorans SS3 11044156 YP_004783585.1 CDS Acife_1093 NC_015942.1 1118577 1119530 D TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: afr:AFE_2219 ribosomal large subunit pseudouridine synthase C; SMART: RNA-binding S4; RluA family pseudouridine synthase 1118577..1119530 Acidithiobacillus ferrivorans SS3 11042193 YP_004783586.1 CDS Acife_1095 NC_015942.1 1120632 1121429 R PFAM: Inositol monophosphatase; KEGG: afr:AFE_0669 inositol monophosphate family protein; inositol monophosphatase complement(1120632..1121429) Acidithiobacillus ferrivorans SS3 11042195 YP_004783587.1 CDS Acife_1096 NC_015942.1 1121484 1122272 D KEGG: afr:AFE_0670 RNA methyltransferase, TrmH family, group 1; TIGRFAM: RNA methyltransferase TrmH, group 1; PFAM: tRNA/rRNA methyltransferase, SpoU; TrmH family RNA methyltransferase 1121484..1122272 Acidithiobacillus ferrivorans SS3 11042196 YP_004783588.1 CDS Acife_1097 NC_015942.1 1122272 1123066 D TIGRFAM: Serine O-acetyltransferase; KEGG: afe:Lferr_0820 serine O-acetyltransferase; serine O-acetyltransferase 1122272..1123066 Acidithiobacillus ferrivorans SS3 11044157 YP_004783589.1 CDS Acife_1098 NC_015942.1 1123113 1123601 D KEGG: afr:AFE_0672 iron-sulfur cluster assembly transcription factor IscR; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2; BadM/Rrf2 family transcriptional regulator 1123113..1123601 Acidithiobacillus ferrivorans SS3 11042197 YP_004783590.1 CDS Acife_1099 NC_015942.1 1123620 1124885 D TIGRFAM: Cysteine desulfurase; HAMAP: Cysteine desulfurase; KEGG: afe:Lferr_0822 cysteine desulfurase IscS; PFAM: Aminotransferase, class V/Cysteine desulfurase; cysteine desulfurase 1123620..1124885 Acidithiobacillus ferrivorans SS3 11042198 YP_004783591.1 CDS Acife_1100 NC_015942.1 1124910 1125341 D KEGG: afr:AFE_0674 FeS cluster assembly scaffold protein IscU; TIGRFAM: ISC system FeS cluster assembly, IscU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; FeS cluster assembly scaffold IscU 1124910..1125341 Acidithiobacillus ferrivorans SS3 11042199 YP_004783592.1 CDS Acife_1101 NC_015942.1 1125351 1125674 D KEGG: afr:AFE_0675 iron-sulfur cluster assembly protein IscA; TIGRFAM: ISC system FeS cluster assembly, IscA scaffold; FeS cluster insertion; PFAM: FeS cluster biogenesis; iron-sulfur cluster assembly protein IscA 1125351..1125674 Acidithiobacillus ferrivorans SS3 11042200 YP_004783593.1 CDS Acife_1102 NC_015942.1 1125674 1126291 D TIGRFAM: Co-chaperone Hsc20; HAMAP: Co-chaperone protein hscB; KEGG: afe:Lferr_0825 co-chaperone Hsc20; PFAM: Heat shock cognate protein B, C-terminal oligomerisation; Heat shock protein DnaJ, N-terminal; Co-chaperone protein hscB 1125674..1126291 Acidithiobacillus ferrivorans SS3 11044158 YP_004783594.1 CDS Acife_1103 NC_015942.1 1126372 1128237 D TIGRFAM: ISC system FeS cluster assembly, HscA chaperone; HAMAP: ISC system FeS cluster assembly, HscA chaperone; KEGG: afr:AFE_0677 chaperone protein HscA; PFAM: Heat shock protein 70; chaperone protein hscA 1126372..1128237 Acidithiobacillus ferrivorans SS3 11042201 YP_004783595.1 CDS Acife_1104 NC_015942.1 1128238 1128576 D KEGG: afr:AFE_0678 ferredoxin, 2Fe-2S; TIGRFAM: Ferredoxin, 2Fe-2S type; PFAM: Ferredoxin; ferredoxin, 2Fe-2S type, ISC system 1128238..1128576 Acidithiobacillus ferrivorans SS3 11042202 YP_004783596.1 CDS Acife_1105 NC_015942.1 1128576 1128770 D KEGG: afr:AFE_0679 hypothetical protein; TIGRFAM: ISC system FeS cluster assembly, IscX; PFAM: ISC system FeS cluster assembly, IscX; FeS assembly protein IscX 1128576..1128770 Acidithiobacillus ferrivorans SS3 11044159 YP_004783597.1 CDS Acife_1106 NC_015942.1 1128784 1129842 D TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: afr:AFE_0680 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase-like; tRNA-specific 2-thiouridylase mnmA 1128784..1129842 Acidithiobacillus ferrivorans SS3 11044160 YP_004783598.1 CDS Acife_1107 NC_015942.1 1129861 1130760 R PFAM: Patatin; KEGG: afr:AFE_0681 patatin-like phospholipase family protein; patatin complement(1129861..1130760) Acidithiobacillus ferrivorans SS3 11042203 YP_004783599.1 CDS Acife_1108 NC_015942.1 1131016 1131258 D TIGRFAM: Prevent-host-death protein; KEGG: sfu:Sfum_1406 prevent-host-death family protein; prevent-host-death family protein 1131016..1131258 Acidithiobacillus ferrivorans SS3 11042204 YP_004783600.1 CDS Acife_1109 NC_015942.1 1131258 1131680 D KEGG: amv:ACMV_26750 hypothetical protein; hypothetical protein 1131258..1131680 Acidithiobacillus ferrivorans SS3 11044161 YP_004783601.1 CDS Acife_1110 NC_015942.1 1131703 1131831 D KEGG: tye:THEYE_A1689 type I restriction enzyme EcoKI M protein; hypothetical protein 1131703..1131831 Acidithiobacillus ferrivorans SS3 11042205 YP_004783602.1 CDS Acife_1111 NC_015942.1 1131831 1132685 D KEGG: afr:AFE_0698 S-formylglutathione hydrolase; TIGRFAM: S-formylglutathione hydrolase; PFAM: Putative esterase; S-formylglutathione hydrolase 1131831..1132685 Acidithiobacillus ferrivorans SS3 11044162 YP_004783603.1 CDS Acife_1112 NC_015942.1 1132783 1132983 D KEGG: afr:AFE_0642 thiamine biosynthesis protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS; thiamine biosynthesis protein ThiS 1132783..1132983 Acidithiobacillus ferrivorans SS3 11042206 YP_004783604.1 CDS Acife_1113 NC_015942.1 1133028 1133810 D KEGG: afr:AFE_0643 thiamin biosynthesis protein ThiG; HAMAP: Thiazole biosynthesis; PFAM: Thiazole biosynthesis; thiazole synthase 1133028..1133810 Acidithiobacillus ferrivorans SS3 11042207 YP_004783605.1 CDS Acife_1114 NC_015942.1 1133791 1134381 D KEGG: afr:AFE_0644 hypothetical protein; hypothetical protein 1133791..1134381 Acidithiobacillus ferrivorans SS3 11042208 YP_004783606.1 CDS Acife_1115 NC_015942.1 1134395 1135762 D manually curated; TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; KEGG: afr:AFE_0645 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal; UDP-N-acetylmuramate--L-alanine ligase 1134395..1135762 Acidithiobacillus ferrivorans SS3 11042209 YP_004783607.1 CDS Acife_1116 NC_015942.1 1135793 1136434 D KEGG: afr:AFE_0647 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1135793..1136434 Acidithiobacillus ferrivorans SS3 11044163 YP_004783608.1 CDS Acife_1117 NC_015942.1 1136451 1137236 R KEGG: afr:AFE_0646 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter complement(1136451..1137236) Acidithiobacillus ferrivorans SS3 11042210 YP_004783609.1 CDS Acife_1118 NC_015942.1 1137236 1138345 R KEGG: afr:AFE_0648 ABC transporter, permease protein, putative; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140; hypothetical protein complement(1137236..1138345) Acidithiobacillus ferrivorans SS3 11042211 YP_004783610.1 CDS Acife_1119 NC_015942.1 1138417 1138923 D SMART: Water Stress/Hypersensitive response domain; KEGG: afr:AFE_0650 hypothetical protein; Water stress and Hypersensitive response domain-containing protein 1138417..1138923 Acidithiobacillus ferrivorans SS3 11042212 YP_004783611.1 CDS Acife_1120 NC_015942.1 1138868 1139659 R PFAM: Endonuclease/exonuclease/phosphatase; KEGG: afe:Lferr_0800 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(1138868..1139659) Acidithiobacillus ferrivorans SS3 11042213 YP_004783612.1 CDS Acife_1121 NC_015942.1 1139637 1139987 R KEGG: afr:AFE_0651 hypothetical protein; hypothetical protein complement(1139637..1139987) Acidithiobacillus ferrivorans SS3 11042214 YP_004783613.1 CDS Acife_1122 NC_015942.1 1139984 1140739 R PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; KEGG: afr:AFE_0652 molybdopterin biosynthesis MoeB protein; UBA/THIF-type NAD/FAD binding protein complement(1139984..1140739) Acidithiobacillus ferrivorans SS3 11042215 YP_004783614.1 CDS Acife_1123 NC_015942.1 1140732 1141175 R KEGG: tgr:Tgr7_3241 hypothetical protein; hypothetical protein complement(1140732..1141175) Acidithiobacillus ferrivorans SS3 11042216 YP_004783615.1 CDS Acife_1124 NC_015942.1 1141235 1142377 R KEGG: afr:AFE_0653 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2006; hypothetical protein complement(1141235..1142377) Acidithiobacillus ferrivorans SS3 11044164 YP_004783616.1 CDS Acife_1125 NC_015942.1 1142370 1144877 R PFAM: Protein of unknown function DUF214, permase predicted; KEGG: afr:AFE_0654 ABC transporter, permease protein; hypothetical protein complement(1142370..1144877) Acidithiobacillus ferrivorans SS3 11042217 YP_004783617.1 CDS Acife_1126 NC_015942.1 1144874 1145590 R KEGG: afe:Lferr_0805 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter complement(1144874..1145590) Acidithiobacillus ferrivorans SS3 11044165 YP_004783618.1 CDS Acife_1127 NC_015942.1 1145998 1146324 D KEGG: afr:AFE_0657 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; thioredoxin 1145998..1146324 Acidithiobacillus ferrivorans SS3 11042219 YP_004783619.1 CDS Acife_1128 NC_015942.1 1146321 1147697 D TIGRFAM: Transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; KEGG: afr:AFE_0658 transcription termination factor Rho; SMART: Cold shock protein; ATPase, AAA+ type, core; transcription termination factor Rho 1146321..1147697 Acidithiobacillus ferrivorans SS3 11044166 YP_004783620.1 CDS Acife_1129 NC_015942.1 1147773 1147976 D TIGRFAM: Ribosomal protein L31; HAMAP: 50S ribosomal protein L31; KEGG: afr:AFE_0659 ribosomal protein L31; PFAM: Ribosomal protein L31; 50S ribosomal protein L31 1147773..1147976 Acidithiobacillus ferrivorans SS3 11042220 YP_004783621.1 CDS Acife_1130 NC_015942.1 1147983 1149221 D PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; KEGG: afr:AFE_0660 malic enzyme family protein; NAD-binding malic protein 1147983..1149221 Acidithiobacillus ferrivorans SS3 11042221 YP_004783622.1 CDS Acife_1131 NC_015942.1 1149228 1150283 D PFAM: Uncharacterised protein family UPF0118; KEGG: afr:AFE_0661 hypothetical protein; hypothetical protein 1149228..1150283 Acidithiobacillus ferrivorans SS3 11042222 YP_004783623.1 CDS Acife_1132 NC_015942.1 1150433 1152109 D TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: afr:AFE_0662 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 1150433..1152109 Acidithiobacillus ferrivorans SS3 11044167 YP_004783624.1 CDS Acife_1133 NC_015942.1 1152116 1153075 D PFAM: Protein of unknown function DUF88; KEGG: afr:AFE_0663 hypothetical protein; hypothetical protein 1152116..1153075 Acidithiobacillus ferrivorans SS3 11042223 YP_004783625.1 CDS Acife_1134 NC_015942.1 1153083 1154396 R KEGG: afr:AFE_0664 N-acetylglutamate synthase; TIGRFAM: Amino-acid N-acetyltransferase (ArgA); PFAM: Aspartate/glutamate/uridylate kinase; GCN5-related N-acetyltransferase; amino-acid N-acetyltransferase complement(1153083..1154396) Acidithiobacillus ferrivorans SS3 11042224 YP_004783626.1 CDS Acife_1135 NC_015942.1 1154407 1154718 R PFAM: BolA-like protein; KEGG: afr:AFE_0665 BolA family protein; BolA family protein complement(1154407..1154718) Acidithiobacillus ferrivorans SS3 11042225 YP_004783627.1 CDS Acife_1136 NC_015942.1 1154715 1155017 R PFAM: YCII-related; KEGG: afr:AFE_0666 YCII-related domain protein; YCII-like protein complement(1154715..1155017) Acidithiobacillus ferrivorans SS3 11042226 YP_004783628.1 CDS Acife_1137 NC_015942.1 1155105 1155662 R TIGRFAM: Intracellular septation protein A; HAMAP: Intracellular septation protein A; KEGG: afr:AFE_0667 intracellular septation protein A; PFAM: Intracellular septation protein A; intracellular septation protein complement(1155105..1155662) Acidithiobacillus ferrivorans SS3 11042227 YP_004783629.1 CDS Acife_1138 NC_015942.1 1155726 1156598 D KEGG: afr:AFE_0668 hypothetical protein; PFAM: Protein of unknown function DUF815; SMART: ATPase, AAA+ type, core; hypothetical protein 1155726..1156598 Acidithiobacillus ferrivorans SS3 11042228 YP_004783630.1 CDS Acife_1139 NC_015942.1 1156834 1157100 D KEGG: tsc:TSC_c24400 AbrB family transcriptional regulator; AbrB family transcriptional regulator 1156834..1157100 Acidithiobacillus ferrivorans SS3 11042229 YP_004783631.1 CDS Acife_1140 NC_015942.1 1157164 1157457 R TIGRFAM: Addiction module antidote protein, HI1420; KEGG: afe:Lferr_0282 putative transcriptional regulator; addiction module antidote protein complement(1157164..1157457) Acidithiobacillus ferrivorans SS3 11044168 YP_004783632.1 CDS Acife_1141 NC_015942.1 1157459 1157623 R hypothetical protein complement(1157459..1157623) Acidithiobacillus ferrivorans SS3 11042230 YP_004783633.1 CDS Acife_1142 NC_015942.1 1157780 1158094 R PFAM: Nucleotidyltransferase; KEGG: glo:Glov_3592 DNA polymerase beta domain protein region; DNA polymerase beta domain-containing protein complement(1157780..1158094) Acidithiobacillus ferrivorans SS3 11044169 YP_004783634.1 CDS Acife_1143 NC_015942.1 1158087 1158479 R KEGG: glo:Glov_3593 nucleotidyltransferase substrate binding protein, HI0074 family; TIGRFAM: Nucleotidyltransferase substrate binding protein, HI0074; PFAM: Nucleotidyltransferase substrate binding protein, HI0074; nucleotidyltransferase substrate binding protein complement(1158087..1158479) Acidithiobacillus ferrivorans SS3 11042231 YP_004783635.1 CDS Acife_1144 NC_015942.1 1158645 1158977 R KEGG: syp:SYNPCC7002_A1564 HicB-related protein; HicB-like protein complement(1158645..1158977) Acidithiobacillus ferrivorans SS3 11042232 YP_004783636.1 CDS Acife_1147 NC_015942.1 1159211 1159468 D KEGG: lbf:LBF_1159 hypothetical protein; hypothetical protein 1159211..1159468 Acidithiobacillus ferrivorans SS3 11044171 YP_004783637.1 CDS Acife_1148 NC_015942.1 1159562 1160899 D PFAM: Transposase, IS4-like; KEGG: npu:Npun_BR216 hypothetical protein; transposase IS4 family protein 1159562..1160899 Acidithiobacillus ferrivorans SS3 11042234 YP_004783638.1 CDS Acife_1149 NC_015942.1 1160903 1161811 D KEGG: dat:HRM2_05840 hypothetical protein; hypothetical protein 1160903..1161811 Acidithiobacillus ferrivorans SS3 11042235 YP_004783639.1 CDS Acife_1152 NC_015942.1 1162285 1162692 R PFAM: PilT protein, N-terminal; KEGG: eba:ebD130 virulence associated protein VapC; PilT protein domain-containing protein complement(1162285..1162692) Acidithiobacillus ferrivorans SS3 11044172 YP_004783640.1 CDS Acife_1153 NC_015942.1 1162692 1162922 R PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: eba:ebA7217 related to putative virulence-associated proteins and nitrogen regulatory protein NtrP; SpoVT/AbrB domain-containing protein complement(1162692..1162922) Acidithiobacillus ferrivorans SS3 11042238 YP_004783641.1 CDS Acife_1154 NC_015942.1 1163409 1164650 D KEGG: dba:Dbac_2317 AAA family ATPase; AAA family ATPase 1163409..1164650 Acidithiobacillus ferrivorans SS3 11042239 YP_004783642.1 CDS Acife_1155 NC_015942.1 1164672 1166114 R KEGG: afr:AFE_1366 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; Nucleotidyl transferase; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(1164672..1166114) Acidithiobacillus ferrivorans SS3 11042240 YP_004783643.1 CDS Acife_1156 NC_015942.1 1166134 1166466 R KEGG: slt:Slit_2475 hypothetical protein; hypothetical protein complement(1166134..1166466) Acidithiobacillus ferrivorans SS3 11042241 YP_004783644.1 CDS Acife_1157 NC_015942.1 1166463 1166687 R PFAM: Protein of unknown function DUF433; KEGG: ava:Ava_1741 hypothetical protein; hypothetical protein complement(1166463..1166687) Acidithiobacillus ferrivorans SS3 11042242 YP_004783645.1 CDS Acife_1158 NC_015942.1 1166769 1167788 R KEGG: afr:AFE_3292 GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; GDP-mannose 4,6-dehydratase complement(1166769..1167788) Acidithiobacillus ferrivorans SS3 11042243 YP_004783646.1 CDS Acife_1159 NC_015942.1 1167785 1168669 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: afr:AFE_3291 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase complement(1167785..1168669) Acidithiobacillus ferrivorans SS3 11044173 YP_004783647.1 CDS Acife_1160 NC_015942.1 1168666 1169091 R hypothetical protein complement(1168666..1169091) Acidithiobacillus ferrivorans SS3 11042244 YP_004783648.1 CDS Acife_1161 NC_015942.1 1169088 1169321 R hypothetical protein complement(1169088..1169321) Acidithiobacillus ferrivorans SS3 11042245 YP_004783649.1 CDS Acife_1162 NC_015942.1 1169560 1170339 R KEGG: afr:AFE_2093 hypothetical protein; hypothetical protein complement(1169560..1170339) Acidithiobacillus ferrivorans SS3 11042246 YP_004783650.1 CDS Acife_1163 NC_015942.1 1170429 1171085 R KEGG: bxe:Bxe_C1199 hypothetical protein; hypothetical protein complement(1170429..1171085) Acidithiobacillus ferrivorans SS3 11042247 YP_004783651.1 CDS Acife_1166 NC_015942.1 1173287 1174744 R KEGG: afr:AFE_0073 undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; UDP-phosphate galactose phosphotransferase complement(1173287..1174744) Acidithiobacillus ferrivorans SS3 11044175 YP_004783652.1 CDS Acife_1167 NC_015942.1 1174784 1175710 R PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_0082 O antigen biosynthesis rhamnosyltransferase, putative; family 2 glycosyl transferase complement(1174784..1175710) Acidithiobacillus ferrivorans SS3 11042249 YP_004783653.1 CDS Acife_1168 NC_015942.1 1175776 1176825 R PFAM: Glycosyl transferase, group 1; KEGG: afr:AFE_0081 mannosyltransferase; group 1 glycosyl transferase complement(1175776..1176825) Acidithiobacillus ferrivorans SS3 11042250 YP_004783654.1 CDS Acife_1169 NC_015942.1 1176815 1178155 R KEGG: btl:BALH_4774 hypothetical protein; hypothetical protein complement(1176815..1178155) Acidithiobacillus ferrivorans SS3 11044176 YP_004783655.1 CDS Acife_1170 NC_015942.1 1178360 1179568 R PFAM: Glycosyl transferase, group 1; KEGG: afr:AFE_0079 glycosyltransferase, putative; group 1 glycosyl transferase complement(1178360..1179568) Acidithiobacillus ferrivorans SS3 11042251 YP_004783656.1 CDS Acife_1171 NC_015942.1 1179969 1180994 R PFAM: Glycosyl transferase, family 2; KEGG: met:M446_4968 glycosyl transferase family protein; family 2 glycosyl transferase complement(1179969..1180994) Acidithiobacillus ferrivorans SS3 11044177 YP_004783657.1 CDS Acife_1172 NC_015942.1 1180991 1182544 R PFAM: Polysaccharide biosynthesis protein; KEGG: ypb:YPTS_1047 O-unit flippase-like protein; polysaccharide biosynthesis protein complement(1180991..1182544) Acidithiobacillus ferrivorans SS3 11042252 YP_004783658.1 CDS Acife_1173 NC_015942.1 1182537 1183442 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: dhd:Dhaf_4183 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(1182537..1183442) Acidithiobacillus ferrivorans SS3 11042253 YP_004783659.1 CDS Acife_1174 NC_015942.1 1183453 1184001 R KEGG: cth:Cthe_2560 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(1183453..1184001) Acidithiobacillus ferrivorans SS3 11042254 YP_004783660.1 CDS Acife_1175 NC_015942.1 1184007 1185320 R PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bac:BamMC406_2290 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase complement(1184007..1185320) Acidithiobacillus ferrivorans SS3 11042255 YP_004783661.1 CDS Acife_1176 NC_015942.1 1185313 1186395 R KEGG: gca:Galf_2849 CDP-glucose 4,6-dehydratase; TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; CDP-glucose 4,6-dehydratase complement(1185313..1186395) Acidithiobacillus ferrivorans SS3 11042256 YP_004783662.1 CDS Acife_1177 NC_015942.1 1186377 1187147 R KEGG: slt:Slit_2899 glucose-1-phosphate cytidylyltransferase; TIGRFAM: Glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate cytidylyltransferase complement(1186377..1187147) Acidithiobacillus ferrivorans SS3 11042257 YP_004783663.1 CDS Acife_1178 NC_015942.1 1187317 1188315 R KEGG: afr:AFE_1342 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucose 4-epimerase complement(1187317..1188315) Acidithiobacillus ferrivorans SS3 11042258 YP_004783664.1 CDS Acife_1179 NC_015942.1 1188312 1189076 R KEGG: afr:AFE_1341 protein-tyrosine phosphatase, putative; protein-tyrosine phosphatase complement(1188312..1189076) Acidithiobacillus ferrivorans SS3 11044178 YP_004783665.1 CDS Acife_1180 NC_015942.1 1189067 1191571 R KEGG: afr:AFE_1340 tyrosine-protein kinase, putative; TIGRFAM: Exopolysaccharide synthesis protein; PFAM: Lipopolysaccharide biosynthesis; capsular exopolysaccharide family complement(1189067..1191571) Acidithiobacillus ferrivorans SS3 11042259 YP_004783666.1 CDS Acife_1181 NC_015942.1 1191581 1192708 R PFAM: Polysaccharide export protein; KEGG: afr:AFE_1339 polysaccharide biosynthesis/export domain protein; polysaccharide export protein complement(1191581..1192708) Acidithiobacillus ferrivorans SS3 11042260 YP_004783667.1 CDS Acife_1182 NC_015942.1 1192686 1193714 R KEGG: afr:AFE_1338 PAP2 family protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; phosphoesterase PA-phosphatase-like protein complement(1192686..1193714) Acidithiobacillus ferrivorans SS3 11042261 YP_004783668.1 CDS Acife_1183 NC_015942.1 1193724 1193999 R hypothetical protein complement(1193724..1193999) Acidithiobacillus ferrivorans SS3 11042262 YP_004783669.1 CDS Acife_1184 NC_015942.1 1193962 1194435 R TIGRFAM: clan AA aspartic protease, AF_0612 family; KEGG: syn:slr0890 hypothetical protein; clan AA aspartic protease complement(1193962..1194435) Acidithiobacillus ferrivorans SS3 11044179 YP_004783670.1 CDS Acife_1186 NC_015942.1 1194719 1194886 R hypothetical protein complement(1194719..1194886) Acidithiobacillus ferrivorans SS3 11042264 YP_004783671.1 CDS Acife_1187 NC_015942.1 1194953 1195291 R PFAM: PemK-like protein; KEGG: psb:Psyr_0890 toxin ChpB; transcriptional modulator of MazE/toxin, MazF complement(1194953..1195291) Acidithiobacillus ferrivorans SS3 11042265 YP_004783672.1 CDS Acife_1188 NC_015942.1 1195291 1195545 R PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: kva:Kvar_1641 transcriptional regulator/antitoxin, MazE; SpoVT/AbrB domain-containing protein complement(1195291..1195545) Acidithiobacillus ferrivorans SS3 11044180 YP_004783673.1 CDS Acife_1189 NC_015942.1 1195717 1196142 R PFAM: PilT protein, N-terminal; KEGG: tmz:Tmz1t_0480 PilT protein domain protein; PilT protein domain-containing protein complement(1195717..1196142) Acidithiobacillus ferrivorans SS3 11042266 YP_004783674.1 CDS Acife_1190 NC_015942.1 1196139 1196384 R KEGG: tmz:Tmz1t_0479 prevent-host-death family protein; prevent-host-death family protein complement(1196139..1196384) Acidithiobacillus ferrivorans SS3 11044181 YP_004783675.1 CDS Acife_1191 NC_015942.1 1196608 1196832 R KEGG: rrs:RoseRS_3426 hypothetical protein; hypothetical protein complement(1196608..1196832) Acidithiobacillus ferrivorans SS3 11042267 YP_004783676.1 CDS Acife_1192 NC_015942.1 1196925 1197059 R hypothetical protein complement(1196925..1197059) Acidithiobacillus ferrivorans SS3 11042268 YP_004783677.1 CDS Acife_1193 NC_015942.1 1197141 1197476 D manually curated; KEGG: afe:Lferr_0145 transposase family protein; hypothetical protein 1197141..1197476 Acidithiobacillus ferrivorans SS3 11044182 YP_004783678.1 CDS Acife_1194 NC_015942.1 1197584 1199038 R KEGG: afr:AFE_1370 undecaprenyl-phosphate galactosephosphotransferase, putative; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; UDP-phosphate galactose phosphotransferase complement(1197584..1199038) Acidithiobacillus ferrivorans SS3 11042269 YP_004783679.1 CDS Acife_1195 NC_015942.1 1198977 1199123 R hypothetical protein complement(1198977..1199123) Acidithiobacillus ferrivorans SS3 11042270 YP_004783680.1 CDS Acife_1197 NC_015942.1 1200256 1200363 R KEGG: avn:Avin_50240 hypothetical protein; hypothetical protein complement(1200256..1200363) Acidithiobacillus ferrivorans SS3 11042272 YP_004783681.1 CDS Acife_1198 NC_015942.1 1200422 1200763 R hypothetical protein complement(1200422..1200763) Acidithiobacillus ferrivorans SS3 11042273 YP_004783682.1 CDS Acife_1199 NC_015942.1 1200763 1200966 R KEGG: afe:Lferr_1002 hypothetical protein; hypothetical protein complement(1200763..1200966) Acidithiobacillus ferrivorans SS3 11042274 YP_004783683.1 CDS Acife_1200 NC_015942.1 1201235 1201501 D PFAM: CopG-like DNA-binding; KEGG: psp:PSPPH_1760 ribbon-helix-helix protein domain-containing protein; DNA-binding CopG-like domain-containing protein 1201235..1201501 Acidithiobacillus ferrivorans SS3 11042275 YP_004783684.1 CDS Acife_1201 NC_015942.1 1201611 1202216 R KEGG: vap:Vapar_4559 hypothetical protein; hypothetical protein complement(1201611..1202216) Acidithiobacillus ferrivorans SS3 11042276 YP_004783685.1 CDS Acife_1202 NC_015942.1 1202209 1202409 R hypothetical protein complement(1202209..1202409) Acidithiobacillus ferrivorans SS3 11042277 YP_004783686.1 CDS Acife_1203 NC_015942.1 1202745 1203959 D PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: cph:Cpha266_2270 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1202745..1203959 Acidithiobacillus ferrivorans SS3 11044183 YP_004783687.1 CDS Acife_1204 NC_015942.1 1204361 1204657 D KEGG: ajs:Ajs_2239 addiction module antitoxin; TIGRFAM: RelB antitoxin; PFAM: RelB antitoxin; RelB/DinJ family addiction module antitoxin 1204361..1204657 Acidithiobacillus ferrivorans SS3 11042278 YP_004783688.1 CDS Acife_1205 NC_015942.1 1204644 1204880 D PFAM: Plasmid stabilisation system; KEGG: ajs:Ajs_2238 addiction module antitoxin; plasmid stabilization system 1204644..1204880 Acidithiobacillus ferrivorans SS3 11042279 YP_004783689.1 CDS Acife_1206 NC_015942.1 1204899 1205165 D hypothetical protein 1204899..1205165 Acidithiobacillus ferrivorans SS3 11042280 YP_004783690.1 CDS Acife_1207 NC_015942.1 1205417 1206043 D KEGG: afr:AFE_2212 hypothetical protein; hypothetical protein 1205417..1206043 Acidithiobacillus ferrivorans SS3 11044184 YP_004783691.1 CDS Acife_1208 NC_015942.1 1206058 1207134 R PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; KEGG: afr:AFE_2211 oxidoreductase, FAD/FMN-binding; NADH:flavin oxidoreductase/NADH oxidase complement(1206058..1207134) Acidithiobacillus ferrivorans SS3 11042282 YP_004783692.1 CDS Acife_1209 NC_015942.1 1207131 1207859 R PFAM: Dienelactone hydrolase; KEGG: afr:AFE_2210 carboxymethylenebutenolidase family protein; dienelactone hydrolase complement(1207131..1207859) Acidithiobacillus ferrivorans SS3 11044185 YP_004783693.1 CDS Acife_1210 NC_015942.1 1207949 1208566 R PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: afr:AFE_2209 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(1207949..1208566) Acidithiobacillus ferrivorans SS3 11044186 YP_004783694.1 CDS Acife_1212 NC_015942.1 1209967 1210794 R KEGG: afr:AFE_2206 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase complement(1209967..1210794) Acidithiobacillus ferrivorans SS3 11042284 YP_004783695.1 CDS Acife_1213 NC_015942.1 1210791 1212140 R TIGRFAM: Na+/H+ antiporter NhaA; HAMAP: Na+/H+ antiporter NhaA; KEGG: afe:Lferr_1861 Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter nhaA complement(1210791..1212140) Acidithiobacillus ferrivorans SS3 11042285 YP_004783696.1 CDS Acife_1214 NC_015942.1 1212159 1214975 R TIGRFAM: Valyl-tRNA synthetase, class Ia; HAMAP: Valyl-tRNA synthetase; KEGG: afr:AFE_2204 valyl-tRNA synthetase; Valyl-tRNA synthetase complement(1212159..1214975) Acidithiobacillus ferrivorans SS3 11044187 YP_004783697.1 CDS Acife_1215 NC_015942.1 1214987 1215511 R KEGG: afe:Lferr_1859 hypothetical protein; hypothetical protein complement(1214987..1215511) Acidithiobacillus ferrivorans SS3 11044188 YP_004783698.1 CDS Acife_1216 NC_015942.1 1215526 1215951 R PFAM: DNA polymerase III chi subunit, HolC; KEGG: afr:AFE_2203 DNA polymerase III, chi subunit; DNA polymerase III chi subunit HolC complement(1215526..1215951) Acidithiobacillus ferrivorans SS3 11042286 YP_004783699.1 CDS Acife_1217 NC_015942.1 1215964 1217466 R KEGG: afr:AFE_2201 cytosol aminopeptidase; HAMAP: cytosol aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal; cytosol aminopeptidase complement(1215964..1217466) Acidithiobacillus ferrivorans SS3 11042287 YP_004783700.1 CDS Acife_1218 NC_015942.1 1217599 1218705 D PFAM: Permease YjgP/YjgQ, predicted; KEGG: afr:AFE_2200 YjgP/YjgQ family protein; permease YjgP/YjgQ family protein 1217599..1218705 Acidithiobacillus ferrivorans SS3 11042288 YP_004783701.1 CDS Acife_1219 NC_015942.1 1218702 1219775 D PFAM: Permease YjgP/YjgQ, predicted; KEGG: afr:AFE_2199 YjgP/YjgQ family protein; permease YjgP/YjgQ family protein 1218702..1219775 Acidithiobacillus ferrivorans SS3 11042289 YP_004783702.1 CDS Acife_1220 NC_015942.1 1219768 1220112 R KEGG: afe:Lferr_1854 hypothetical protein; hypothetical protein complement(1219768..1220112) Acidithiobacillus ferrivorans SS3 11044189 YP_004783703.1 CDS Acife_1221 NC_015942.1 1220127 1220819 R KEGG: tgr:Tgr7_2771 glutathione S-transferase domain protein; glutathione S-transferase domain-containing protein complement(1220127..1220819) Acidithiobacillus ferrivorans SS3 11044190 YP_004783704.1 CDS Acife_1222 NC_015942.1 1220828 1221280 R PFAM: Uncharacterised protein family UPF0310; KEGG: afr:AFE_2196 hypothetical protein; hypothetical protein complement(1220828..1221280) Acidithiobacillus ferrivorans SS3 11042290 YP_004783705.1 CDS Acife_1223 NC_015942.1 1221285 1221599 R KEGG: afr:AFE_2195 CyaY protein; TIGRFAM: Frataxin-like; PFAM: Frataxin-like; iron donor protein CyaY complement(1221285..1221599) Acidithiobacillus ferrivorans SS3 11042291 YP_004783706.1 CDS Acife_1224 NC_015942.1 1221687 1223483 R TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: afr:AFE_2194 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; ATP-dependent DNA helicase RecQ complement(1221687..1223483) Acidithiobacillus ferrivorans SS3 11044191 YP_004783707.1 CDS Acife_1225 NC_015942.1 1223486 1224325 R PFAM: Metallophosphoesterase; KEGG: afr:AFE_2193 diadenosine tetraphosphatase; metallophosphoesterase complement(1223486..1224325) Acidithiobacillus ferrivorans SS3 11044192 YP_004783708.1 CDS Acife_1226 NC_015942.1 1224329 1224676 R KEGG: afr:AFE_2192 hypothetical protein; hypothetical protein complement(1224329..1224676) Acidithiobacillus ferrivorans SS3 11042292 YP_004783709.1 CDS Acife_1227 NC_015942.1 1224969 1225772 D PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: afr:AFE_2190 ABC transporter, permease protein; ABC transporter permease 1224969..1225772 Acidithiobacillus ferrivorans SS3 11042293 YP_004783710.1 CDS Acife_1228 NC_015942.1 1225791 1226798 D KEGG: afe:Lferr_1847 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 1225791..1226798 Acidithiobacillus ferrivorans SS3 11042294 YP_004783711.1 CDS Acife_1229 NC_015942.1 1226928 1227218 D TIGRFAM: Ribosomal protein S20; HAMAP: Ribosomal protein S20; KEGG: afr:AFE_2188 30S ribosomal protein S20; PFAM: Ribosomal protein S20; 30S ribosomal protein S20 1226928..1227218 Acidithiobacillus ferrivorans SS3 11042295 YP_004783712.1 CDS Acife_1230 NC_015942.1 1227319 1229304 R PFAM: DNA helicase, UvrD/REP type; KEGG: afr:AFE_2187 ATP-dependent DNA helicase Rep; UvrD/REP helicase complement(1227319..1229304) Acidithiobacillus ferrivorans SS3 11044193 YP_004783713.1 CDS Acife_1231 NC_015942.1 1229328 1230146 R TIGRFAM: Prolipoprotein diacylglyceryl transferase; HAMAP: Prolipoprotein diacylglyceryl transferase; KEGG: afr:AFE_2186 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase complement(1229328..1230146) Acidithiobacillus ferrivorans SS3 11044194 YP_004783714.1 CDS Acife_1232 NC_015942.1 1230217 1231248 R PFAM: Peptidyl-arginine deiminase, Porphyromonas-type; KEGG: afr:AFE_2176 peptidyl-arginine deiminase; peptidyl-arginine deiminase complement(1230217..1231248) Acidithiobacillus ferrivorans SS3 11042296 YP_004783715.1 CDS Acife_1233 NC_015942.1 1231336 1232049 D TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: afr:AFE_2175 ribosomal small subunit pseudouridine synthase A; SMART: RNA-binding S4; pseudouridine synthase Rsu 1231336..1232049 Acidithiobacillus ferrivorans SS3 11042297 YP_004783716.1 CDS Acife_1234 NC_015942.1 1232046 1232495 D PFAM: NUDIX hydrolase domain; KEGG: afr:AFE_2174 NUDIX hydrolase; NUDIX hydrolase 1232046..1232495 Acidithiobacillus ferrivorans SS3 11042298 YP_004783717.1 CDS Acife_1235 NC_015942.1 1232553 1233077 D KEGG: afr:AFE_2173 NUDIX hydrolase; HAMAP: RNA pyrophosphohydrolase; PFAM: NUDIX hydrolase domain; RNA pyrophosphohydrolase 1232553..1233077 Acidithiobacillus ferrivorans SS3 11042299 YP_004783718.1 CDS Acife_1236 NC_015942.1 1233053 1234519 R KEGG: afr:AFE_2171 GTP-binding protein; GTP-binding protein complement(1233053..1234519) Acidithiobacillus ferrivorans SS3 11044195 YP_004783719.1 CDS Acife_1237 NC_015942.1 1234486 1235322 R PFAM: Polysaccharide deacetylase; KEGG: afe:Lferr_1828 polysaccharide deacetylase; polysaccharide deacetylase complement(1234486..1235322) Acidithiobacillus ferrivorans SS3 11042300 YP_004783720.1 CDS Acife_1238 NC_015942.1 1235523 1236320 D KEGG: afr:AFE_2160 hypothetical protein; hypothetical protein 1235523..1236320 Acidithiobacillus ferrivorans SS3 11042301 YP_004783721.1 CDS Acife_1239 NC_015942.1 1236406 1237317 D PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afe:Lferr_1817 LysR family transcriptional regulator; LysR family transcriptional regulator 1236406..1237317 Acidithiobacillus ferrivorans SS3 11042302 YP_004783722.1 CDS Acife_1240 NC_015942.1 1237325 1239604 R KEGG: afr:AFE_2157 von Willebrand factor type A domain protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; von Willebrand factor type A complement(1237325..1239604) Acidithiobacillus ferrivorans SS3 11042303 YP_004783723.1 CDS Acife_1241 NC_015942.1 1239627 1240445 R KEGG: afr:AFE_2156 CbbQ protein; CbbQ protein complement(1239627..1240445) Acidithiobacillus ferrivorans SS3 11042304 YP_004783724.1 CDS Acife_1242 NC_015942.1 1240596 1241975 R KEGG: afr:AFE_2155 ribulose bisphosphate carboxylase; HAMAP: Ribulose bisphosphate carboxylase; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal; ribulose bisphosphate carboxylase complement(1240596..1241975) Acidithiobacillus ferrivorans SS3 11044196 YP_004783725.1 CDS Acife_1243 NC_015942.1 1242229 1242726 R PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; KEGG: afr:AFE_2154 hydrogenase-4, I subunit; NADH ubiquinone oxidoreductase 20 kDa subunit complement(1242229..1242726) Acidithiobacillus ferrivorans SS3 11044197 YP_004783726.1 CDS Acife_1244 NC_015942.1 1242763 1244313 R PFAM: NADH-quinone oxidoreductase, subunit D; NADH:ubiquinone oxidoreductase, 30kDa subunit; KEGG: afr:AFE_2153 hydrogenase-4, G subunit; NADH-ubiquinone oxidoreductase chain 49kDa complement(1242763..1244313) Acidithiobacillus ferrivorans SS3 11042305 YP_004783727.1 CDS Acife_1245 NC_015942.1 1244324 1245778 R PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; KEGG: afr:AFE_2152 hydrogenase 4 subunit F; NADH/Ubiquinone/plastoquinone (complex I) complement(1244324..1245778) Acidithiobacillus ferrivorans SS3 11042306 YP_004783728.1 CDS Acife_1246 NC_015942.1 1245778 1246455 R KEGG: afr:AFE_2151 hydrogenase-4, E subunit; hydrogenase-4 subunit E complement(1245778..1246455) Acidithiobacillus ferrivorans SS3 11042307 YP_004783729.1 CDS Acife_1247 NC_015942.1 1246457 1247398 R KEGG: afr:AFE_2150 hydrogenase-4, C subunit; hydrogenase-4 subunit C complement(1246457..1247398) Acidithiobacillus ferrivorans SS3 11042308 YP_004783730.1 CDS Acife_1248 NC_015942.1 1247395 1249377 R PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; KEGG: afr:AFE_2149 hydrogenase 4 subunit B; NADH/Ubiquinone/plastoquinone (complex I) complement(1247395..1249377) Acidithiobacillus ferrivorans SS3 11042309 YP_004783731.1 CDS Acife_1249 NC_015942.1 1249374 1249919 R KEGG: afr:AFE_2148 DNA-binding protein, putative; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein complement(1249374..1249919) Acidithiobacillus ferrivorans SS3 11042310 YP_004783732.1 CDS Acife_1250 NC_015942.1 1249977 1251068 R KEGG: afr:AFE_2147 GTP-binding protein YchF; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Protein of unknown function DUF933; GTP-binding protein, HSR1-related; GTP-binding protein YchF complement(1249977..1251068) Acidithiobacillus ferrivorans SS3 11042311 YP_004783733.1 CDS Acife_1251 NC_015942.1 1251078 1251647 R TIGRFAM: Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; KEGG: afr:AFE_2146 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase complement(1251078..1251647) Acidithiobacillus ferrivorans SS3 11042312 YP_004783734.1 CDS Acife_1252 NC_015942.1 1251654 1252262 R TIGRFAM: Ribosomal protein L25; HAMAP: 50S ribosomal protein L25; Ribosomal protein L25; KEGG: afr:AFE_2145 ribosomal protein L25; PFAM: Ribosomal protein L25, N-terminal; 50S ribosomal protein L25 complement(1251654..1252262) Acidithiobacillus ferrivorans SS3 11042313 YP_004783735.1 CDS Acife_1253 NC_015942.1 1252275 1254188 R KEGG: afr:AFE_2144 penicillin-binding protein 2, putative; TIGRFAM: Penicillin-binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; penicillin-binding protein 2 complement(1252275..1254188) Acidithiobacillus ferrivorans SS3 11042314 YP_004783736.1 CDS Acife_1254 NC_015942.1 1254255 1254515 D KEGG: afr:AFE_2143 hypothetical protein; hypothetical protein 1254255..1254515 Acidithiobacillus ferrivorans SS3 11042315 YP_004783737.1 CDS Acife_1255 NC_015942.1 1254537 1254851 D PFAM: Cell division protein ZapA-like; KEGG: afr:AFE_2142 hypothetical protein; hypothetical protein 1254537..1254851 Acidithiobacillus ferrivorans SS3 11044198 YP_004783738.1 CDS Acife_1256 NC_015942.1 1255095 1255658 D KEGG: afr:AFE_2140 5-formyltetrahydrofolate cyclo-ligase family protein; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 1255095..1255658 Acidithiobacillus ferrivorans SS3 11042317 YP_004783739.1 CDS Acife_1258 NC_015942.1 1255831 1257606 R PFAM: Peptidase M61; KEGG: afr:AFE_2138 PDZ domain protein; peptidase M61 domain-containing protein complement(1255831..1257606) Acidithiobacillus ferrivorans SS3 11042319 YP_004783740.1 CDS Acife_1259 NC_015942.1 1257617 1257916 R KEGG: afr:AFE_2137 hydrolase, isochorismatase family; hypothetical protein complement(1257617..1257916) Acidithiobacillus ferrivorans SS3 11042320 YP_004783741.1 CDS Acife_1260 NC_015942.1 1257923 1258576 R PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: afr:AFE_2136 protein-L-isoaspartate O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase complement(1257923..1258576) Acidithiobacillus ferrivorans SS3 11042321 YP_004783742.1 CDS Acife_1261 NC_015942.1 1258727 1259665 D PFAM: Mammalian cell entry related; KEGG: afr:AFE_2135 mce-related protein; mammalian cell entry related domain-containing protein 1258727..1259665 Acidithiobacillus ferrivorans SS3 11042322 YP_004783743.1 CDS Acife_1262 NC_015942.1 1259670 1260335 D PFAM: Protein of unknown function DUF330; KEGG: afr:AFE_2134 lipoprotein, putative; hypothetical protein 1259670..1260335 Acidithiobacillus ferrivorans SS3 11044199 YP_004783744.1 CDS Acife_1263 NC_015942.1 1260345 1260821 R PFAM: UspA; KEGG: afr:AFE_2133 universal stress family protein; UspA domain-containing protein complement(1260345..1260821) Acidithiobacillus ferrivorans SS3 11042323 YP_004783745.1 CDS Acife_1264 NC_015942.1 1260814 1262526 R TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: Prolyl-tRNA synthetase; KEGG: afr:AFE_2132 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; YbaK/aminoacyl-tRNA synthetase associated region; Anticodon-binding; prolyl-tRNA synthetase complement(1260814..1262526) Acidithiobacillus ferrivorans SS3 11042324 YP_004783746.1 CDS Acife_1265 NC_015942.1 1262645 1262980 D hypothetical protein 1262645..1262980 Acidithiobacillus ferrivorans SS3 11042325 YP_004783747.1 CDS Acife_1266 NC_015942.1 1263095 1264297 R PFAM: Acyltransferase 3; KEGG: dmr:Deima_1375 acyltransferase 3; acyltransferase 3 complement(1263095..1264297) Acidithiobacillus ferrivorans SS3 11042326 YP_004783748.1 CDS Acife_1267 NC_015942.1 1264895 1265344 D TIGRFAM: Bacterial protein export chaperone SecB; HAMAP: Bacterial protein export chaperone SecB; KEGG: afr:AFE_2127 preprotein translocase, SecB subunit; PFAM: Bacterial protein export chaperone SecB; protein-export protein secB 1264895..1265344 Acidithiobacillus ferrivorans SS3 11044201 YP_004783749.1 CDS Acife_1268 NC_015942.1 1265348 1266376 D KEGG: afr:AFE_2126 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; HAMAP: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; glycerol-3-phosphate dehydrogenase (NAD(P)+) 1265348..1266376 Acidithiobacillus ferrivorans SS3 11042327 YP_004783750.1 CDS Acife_1269 NC_015942.1 1266518 1267561 D PFAM: Squalene/phytoene synthase; KEGG: afr:AFE_2125 phytoene/squalene synthetase family protein; Squalene/phytoene synthase 1266518..1267561 Acidithiobacillus ferrivorans SS3 11042328 YP_004783751.1 CDS Acife_1270 NC_015942.1 1267558 1269489 D KEGG: afr:AFE_2124 squalene-hopene cyclase; TIGRFAM: Hopene cyclase; Squalene cyclase; PFAM: Prenyltransferase/squalene oxidase; squalene-hopene cyclase 1267558..1269489 Acidithiobacillus ferrivorans SS3 11042329 YP_004783752.1 CDS Acife_1271 NC_015942.1 1269471 1270178 D KEGG: afr:AFE_2123 MTA/SAH nucleosidase, putative; TIGRFAM: Hopanoid-associated phosphorylase HpnG; PFAM: Nucleoside phosphorylase; hopanoid-associated phosphorylase 1269471..1270178 Acidithiobacillus ferrivorans SS3 11042330 YP_004783753.1 CDS Acife_1272 NC_015942.1 1270175 1271164 D KEGG: afr:AFE_2122 hypothetical protein; TIGRFAM: Hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; hopanoid-associated sugar epimerase 1270175..1271164 Acidithiobacillus ferrivorans SS3 11042331 YP_004783754.1 CDS Acife_1273 NC_015942.1 1271225 1272361 D KEGG: afr:AFE_2121 glycosyl transferase, group 2 family protein; TIGRFAM: Glycosyl transferase, family 2, hopene-associated, HpnI; PFAM: Glycosyl transferase, family 2; hopanoid biosynthesis associated glycosyl transferase protein HpnI 1271225..1272361 Acidithiobacillus ferrivorans SS3 11044202 YP_004783755.1 CDS Acife_1274 NC_015942.1 1272361 1273791 D TIGRFAM: Hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: Radical SAM; KEGG: afr:AFE_2120 radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; hopanoid biosynthesis associated radical SAM protein HpnJ 1272361..1273791 Acidithiobacillus ferrivorans SS3 11042332 YP_004783756.1 CDS Acife_1275 NC_015942.1 1273793 1274668 D KEGG: afr:AFE_2119 hypothetical protein; TIGRFAM: Hopanoid biosynthesis associated protein HpnK; PFAM: YdjC-like protein; hopanoid biosynthesis associated protein HpnK 1273793..1274668 Acidithiobacillus ferrivorans SS3 11042333 YP_004783757.1 CDS Acife_1276 NC_015942.1 1274649 1277351 D TIGRFAM: Hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: afe:Lferr_1777 hopanoid biosynthesis associated RND transporter-like protein HpnN; hopanoid biosynthesis associated RND transporter like protein HpnN 1274649..1277351 Acidithiobacillus ferrivorans SS3 11042334 YP_004783758.1 CDS Acife_1277 NC_015942.1 1277338 1278375 D TIGRFAM: membrane protein; Lysylphosphatidylglycerol synthetase/UPF0104; KEGG: afe:Lferr_1776 membrane protein; membrane protein 1277338..1278375 Acidithiobacillus ferrivorans SS3 11042335 YP_004783759.1 CDS Acife_1278 NC_015942.1 1278526 1279629 D KEGG: afr:AFE_2115 radical SAM domain protein; TIGRFAM: Hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM; hopanoid biosynthesis associated radical SAM protein HpnH 1278526..1279629 Acidithiobacillus ferrivorans SS3 11044203 YP_004783760.1 CDS Acife_1279 NC_015942.1 1279677 1280345 D KEGG: afr:AFE_2114 hypothetical protein; TIGRFAM: Hopanoid biosynthesis-associated membrane protein HpnM; PFAM: Toluene tolerance; hopanoid biosynthesis associated membrane protein HpnM 1279677..1280345 Acidithiobacillus ferrivorans SS3 11044204 YP_004783761.1 CDS Acife_1280 NC_015942.1 1280342 1281148 D PFAM: VacJ-like lipoprotein; KEGG: afe:Lferr_1772 VacJ family lipoprotein; VacJ family lipoprotein 1280342..1281148 Acidithiobacillus ferrivorans SS3 11042336 YP_004783762.1 CDS Acife_1281 NC_015942.1 1281151 1281438 D TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; HAMAP: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; KEGG: afr:AFE_2112 glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C 1281151..1281438 Acidithiobacillus ferrivorans SS3 11042337 YP_004783763.1 CDS Acife_1282 NC_015942.1 1281448 1282920 D TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; KEGG: afr:AFE_2111 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase; glutamyl-tRNA(Gln) amidotransferase subunit A 1281448..1282920 Acidithiobacillus ferrivorans SS3 11042338 YP_004783764.1 CDS Acife_1283 NC_015942.1 1282923 1284353 D PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, central region; Asn/Gln amidotransferase; manually curated; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; KEGG: afr:AFE_2110 glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, B subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 1282923..1284353 Acidithiobacillus ferrivorans SS3 11042339 YP_004783765.1 CDS Acife_1284 NC_015942.1 1284427 1284975 R KEGG: afe:Lferr_1768 hypothetical protein; hypothetical protein complement(1284427..1284975) Acidithiobacillus ferrivorans SS3 11044205 YP_004783766.1 CDS Acife_1285 NC_015942.1 1285937 1287196 D KEGG: afr:AFE_1433 ATP-dependent RNA helicase RhlE; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; DEAD/DEAH box helicase domain-containing protein 1285937..1287196 Acidithiobacillus ferrivorans SS3 11042340 YP_004783767.1 CDS Acife_1286 NC_015942.1 1287316 1288026 D TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein phoB; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; KEGG: afr:AFE_1434 DNA-binding response regulator PhoB; SMART: Signal transduction response regulator, receiver region; two component transcriptional regulator PhoB, winged helix family 1287316..1288026 Acidithiobacillus ferrivorans SS3 11042341 YP_004783768.1 CDS Acife_1287 NC_015942.1 1288007 1289437 D TIGRFAM: Signal transduction histidine kinase, phosphate regulon sensor PhoR; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; KEGG: afr:AFE_1435 phosphate regulon sensor protein PhoR; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; multi-sensor signal transduction histidine kinase 1288007..1289437 Acidithiobacillus ferrivorans SS3 11042342 YP_004783769.1 CDS Acife_1288 NC_015942.1 1289522 1290526 D KEGG: afr:AFE_1436 phosphate ABC transporter, periplasmic phosphate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1; phosphate ABC transporter substrate-binding protein 1289522..1290526 Acidithiobacillus ferrivorans SS3 11044206 YP_004783770.1 CDS Acife_1289 NC_015942.1 1290535 1291557 D KEGG: afe:Lferr_1154 phosphate ABC transporter inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 1290535..1291557 Acidithiobacillus ferrivorans SS3 11042343 YP_004783771.1 CDS Acife_1290 NC_015942.1 1291554 1292408 D KEGG: afr:AFE_1438 phosphate ABC transporter, permease protein PstA; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 1291554..1292408 Acidithiobacillus ferrivorans SS3 11042344 YP_004783772.1 CDS Acife_1291 NC_015942.1 1292408 1293175 D TIGRFAM: Phosphate transport system permease protein 1; PFAM: ABC transporter-like; KEGG: afr:AFE_1439 phosphate ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core; phosphate ABC transporter ATPase 1292408..1293175 Acidithiobacillus ferrivorans SS3 11042345 YP_004783773.1 CDS Acife_1292 NC_015942.1 1293187 1293900 D KEGG: afr:AFE_1440 phosphate transport system protein PhoU; TIGRFAM: PhoU; PFAM: PhoU; phosphate uptake regulator PhoU 1293187..1293900 Acidithiobacillus ferrivorans SS3 11042346 YP_004783774.1 CDS Acife_1293 NC_015942.1 1293903 1295414 D PFAM: Ppx/GppA phosphatase; KEGG: afr:AFE_1441 exopolyphosphatase; Ppx/GppA phosphatase 1293903..1295414 Acidithiobacillus ferrivorans SS3 11042347 YP_004783775.1 CDS Acife_1294 NC_015942.1 1295458 1296594 D PFAM: Glycosyl transferase, group 1; KEGG: afe:Lferr_1142 group 1 glycosyl transferase; group 1 glycosyl transferase 1295458..1296594 Acidithiobacillus ferrivorans SS3 11042348 YP_004783776.1 CDS Acife_1295 NC_015942.1 1296691 1297290 D PFAM: SNARE associated Golgi protein; KEGG: afr:AFE_1443 membrane protein, DedA family; hypothetical protein 1296691..1297290 Acidithiobacillus ferrivorans SS3 11044207 YP_004783777.1 CDS Acife_1296 NC_015942.1 1297498 1298250 D KEGG: afr:AFE_1444 ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2; 30S ribosomal protein S2 1297498..1298250 Acidithiobacillus ferrivorans SS3 11042349 YP_004783778.1 CDS Acife_1297 NC_015942.1 1298278 1299156 D TIGRFAM: Translation elongation factor EFTs/EF1B; HAMAP: Elongation factor Ts; KEGG: afr:AFE_1445 elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; elongation factor Ts 1298278..1299156 Acidithiobacillus ferrivorans SS3 11042350 YP_004783779.1 CDS Acife_1298 NC_015942.1 1299157 1299882 D KEGG: afr:AFE_1446 uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Aspartate/glutamate/uridylate kinase; uridylate kinase 1299157..1299882 Acidithiobacillus ferrivorans SS3 11044208 YP_004783780.1 CDS Acife_1299 NC_015942.1 1299879 1300439 D TIGRFAM: Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; KEGG: afr:AFE_1447 ribosome recycling factor; PFAM: Ribosome recycling factor; ribosome-recycling factor 1299879..1300439 Acidithiobacillus ferrivorans SS3 11042351 YP_004783781.1 CDS Acife_1300 NC_015942.1 1300443 1301204 D TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; HAMAP: Undecaprenyl pyrophosphate synthase; KEGG: afe:Lferr_1164 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; UDP pyrophosphate synthase 1300443..1301204 Acidithiobacillus ferrivorans SS3 11042352 YP_004783782.1 CDS Acife_1301 NC_015942.1 1301186 1301998 D PFAM: Phosphatidate cytidylyltransferase; KEGG: afr:AFE_1449 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1301186..1301998 Acidithiobacillus ferrivorans SS3 11044209 YP_004783783.1 CDS Acife_1302 NC_015942.1 1301995 1303170 D TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: afr:AFE_1450 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1301995..1303170 Acidithiobacillus ferrivorans SS3 11042353 YP_004783784.1 CDS Acife_1303 NC_015942.1 1303186 1304544 D TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; KEGG: afr:AFE_1451 membrane-associated zinc metalloprotease, putative; SMART: PDZ/DHR/GLGF; membrane-associated zinc metalloprotease 1303186..1304544 Acidithiobacillus ferrivorans SS3 11042354 YP_004783785.1 CDS Acife_1304 NC_015942.1 1304541 1306886 D KEGG: afr:AFE_1452 outer membrane protein, OMP85 family; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; outer membrane protein assembly complex, YaeT protein 1304541..1306886 Acidithiobacillus ferrivorans SS3 11042355 YP_004783786.1 CDS Acife_1305 NC_015942.1 1306904 1307440 D PFAM: Outer membrane chaperone Skp (OmpH); KEGG: afr:AFE_1453 outer membrane protein, OmpH family; outer membrane chaperone Skp 1306904..1307440 Acidithiobacillus ferrivorans SS3 11042356 YP_004783787.1 CDS Acife_1306 NC_015942.1 1307442 1308503 D TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: afr:AFE_1454 UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 1307442..1308503 Acidithiobacillus ferrivorans SS3 11042357 YP_004783788.1 CDS Acife_1307 NC_015942.1 1308496 1308942 D TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; HAMAP: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; KEGG: afr:AFE_1455 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; (3R)-hydroxymyristoyl-ACP dehydratase 1308496..1308942 Acidithiobacillus ferrivorans SS3 11042358 YP_004783789.1 CDS Acife_1308 NC_015942.1 1308939 1309721 D TIGRFAM: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; HAMAP: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: afr:AFE_1456 acyl-(acyl-carrier-protein)-UDP-N-acetylglucosamine acyltransferase; PFAM: Bacterial transferase hexapeptide repeat; acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase 1308939..1309721 Acidithiobacillus ferrivorans SS3 11042359 YP_004783790.1 CDS Acife_1309 NC_015942.1 1309718 1310659 D PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: afr:AFE_1457 oxidoreductase, NAD-binding; oxidoreductase domain-containing protein 1309718..1310659 Acidithiobacillus ferrivorans SS3 11044210 YP_004783791.1 CDS Acife_1310 NC_015942.1 1310705 1311814 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: afr:AFE_1458 pleiotropic regulatory protein, putative; DegT/DnrJ/EryC1/StrS aminotransferase 1310705..1311814 Acidithiobacillus ferrivorans SS3 11044211 YP_004783792.1 CDS Acife_1311 NC_015942.1 1311819 1312946 D KEGG: afr:AFE_1459 lipid A disaccharide synthase LpxB; TIGRFAM: Glycosyl transferase, family 19; PFAM: Glycosyl transferase, family 19; lipid-A-disaccharide synthase 1311819..1312946 Acidithiobacillus ferrivorans SS3 11042360 YP_004783793.1 CDS Acife_1312 NC_015942.1 1312960 1313553 D PFAM: Ribonuclease HII/HIII; KEGG: afr:AFE_1460 ribonuclease HII; ribonuclease HII/HIII 1312960..1313553 Acidithiobacillus ferrivorans SS3 11042361 YP_004783794.1 CDS Acife_1313 NC_015942.1 1313550 1317050 D TIGRFAM: DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: afr:AFE_1461 DNA polymerase III, alpha subunit; SMART: Polymerase/histidinol phosphatase, N-terminal; DNA polymerase III subunit alpha 1313550..1317050 Acidithiobacillus ferrivorans SS3 11044212 YP_004783795.1 CDS Acife_1314 NC_015942.1 1317085 1318035 D TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; KEGG: afr:AFE_1462 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 1317085..1318035 Acidithiobacillus ferrivorans SS3 11042362 YP_004783796.1 CDS Acife_1315 NC_015942.1 1318013 1319407 D TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal; HAMAP: tRNA(Ile)-lysidine synthase; KEGG: afr:AFE_1464 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop; Lysidine-tRNA(Ile) synthetase, substrate-binding domain; tRNA(Ile)-lysidine synthase 1318013..1319407 Acidithiobacillus ferrivorans SS3 11042363 YP_004783797.1 CDS Acife_1316 NC_015942.1 1319371 1320702 R KEGG: afr:AFE_1463 dihydroorotase; TIGRFAM: Dihydroorotase multifunctional complex type; PFAM: Amidohydrolase 1; dihydroorotase, multifunctional complex type complement(1319371..1320702) Acidithiobacillus ferrivorans SS3 11042364 YP_004783798.1 CDS Acife_1317 NC_015942.1 1320707 1321171 R TIGRFAM: RNA polymerase-binding, DksA; KEGG: afr:AFE_1465 DnaK suppressor protein; TraR/DksA family transcriptional regulator complement(1320707..1321171) Acidithiobacillus ferrivorans SS3 11042365 YP_004783799.1 CDS Acife_1318 NC_015942.1 1321341 1322105 D KEGG: afr:AFE_1466 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; HAD-superfamily hydrolase 1321341..1322105 Acidithiobacillus ferrivorans SS3 11042366 YP_004783800.1 CDS Acife_1319 NC_015942.1 1322227 1323468 R PFAM: Glycoside hydrolase, family 8; KEGG: aca:ACP_0076 endo-1,4-D-glucanase; glycoside hydrolase family protein complement(1322227..1323468) Acidithiobacillus ferrivorans SS3 11042367 YP_004783801.1 CDS Acife_1320 NC_015942.1 1323498 1324163 R KEGG: pao:Pat9b_0116 cellulose synthase operon C domain-containing protein; hypothetical protein complement(1323498..1324163) Acidithiobacillus ferrivorans SS3 11042368 YP_004783802.1 CDS Acife_1321 NC_015942.1 1324190 1326343 R KEGG: met:M446_0104 hypothetical protein; hypothetical protein complement(1324190..1326343) Acidithiobacillus ferrivorans SS3 11044213 YP_004783803.1 CDS Acife_1322 NC_015942.1 1326340 1328427 R PFAM: Cellulose synthase BcsB, bacterial; KEGG: cse:Cseg_3479 cellulose synthase catalytic subunit; cellulose synthase BcsB complement(1326340..1328427) Acidithiobacillus ferrivorans SS3 11042369 YP_004783804.1 CDS Acife_1323 NC_015942.1 1328454 1330739 R KEGG: amc:MADE_00787 cellulose synthase catalytic subunit; TIGRFAM: Cellulose synthase catalytic subunit (UDP-forming); PFAM: Glycosyl transferase, family 2; Type IV pilus assembly PilZ; cellulose synthase catalytic subunit complement(1328454..1330739) Acidithiobacillus ferrivorans SS3 11042370 YP_004783805.1 CDS Acife_1324 NC_015942.1 1330781 1331758 R KEGG: afr:AFE_0445 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase complement(1330781..1331758) Acidithiobacillus ferrivorans SS3 11044214 YP_004783806.1 CDS Acife_1325 NC_015942.1 1332494 1332841 D KEGG: afr:AFE_1834 hypothetical protein; hypothetical protein 1332494..1332841 Acidithiobacillus ferrivorans SS3 11042371 YP_004783807.1 CDS Acife_1326 NC_015942.1 1333104 1333514 D KEGG: har:HEAR0295 hypothetical protein; hypothetical protein 1333104..1333514 Acidithiobacillus ferrivorans SS3 11042372 YP_004783808.1 CDS Acife_1327 NC_015942.1 1333504 1335000 D PFAM: Circadian clock protein KaiC, central region; KaiA binding; KEGG: har:HEAR0296 protein kinase; putative circadian clock protein, KaiC 1333504..1335000 Acidithiobacillus ferrivorans SS3 11042373 YP_004783809.1 CDS Acife_1328 NC_015942.1 1334987 1336696 D TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: geb:GM18_2096 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase 1334987..1336696 Acidithiobacillus ferrivorans SS3 11042374 YP_004783810.1 CDS Acife_1329 NC_015942.1 1336987 1337601 D PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: Di-trans-poly-cis-decaprenylcistransferase; Di-trans-poly-cis-decaprenylcistransferase 1336987..1337601 Acidithiobacillus ferrivorans SS3 11044215 YP_004783811.1 CDS Acife_1330 NC_015942.1 1337751 1339217 R KEGG: har:HEAR0296 protein kinase; putative circadian clock protein, KaiC complement(1337751..1339217) Acidithiobacillus ferrivorans SS3 11042375 YP_004783812.1 CDS Acife_1331 NC_015942.1 1339220 1339615 R manually curated; KEGG: har:HEAR0295 hypothetical protein; hypothetical protein complement(1339220..1339615) Acidithiobacillus ferrivorans SS3 11042376 YP_004783813.1 CDS Acife_1332 NC_015942.1 1339732 1340454 R KEGG: mep:MPQ_2599 transcriptional regulator, crp/fnr family; PFAM: HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; putative Crp/Fnr family transcriptional regulator complement(1339732..1340454) Acidithiobacillus ferrivorans SS3 11044216 YP_004783814.1 CDS Acife_1333 NC_015942.1 1341065 1345618 D KEGG: smt:Smal_0854 outer membrane autotransporter barrel domain-containing protein; TIGRFAM: Outer membrane autotransporter barrel; Autotransporter-associated beta strand repeat; PFAM: Autotransporter beta-domain; outer membrane autotransporter barrel domain-containing protein 1341065..1345618 Acidithiobacillus ferrivorans SS3 11042377 YP_004783815.1 CDS Acife_1334 NC_015942.1 1345699 1345998 R SMART: HTH transcriptional regulator, ArsR; KEGG: afr:AFE_2026 transcriptional regulator, ArsR family; regulatory protein ArsR complement(1345699..1345998) Acidithiobacillus ferrivorans SS3 11042378 YP_004783816.1 CDS Acife_1335 NC_015942.1 1346179 1346319 D hypothetical protein 1346179..1346319 Acidithiobacillus ferrivorans SS3 11044217 YP_004783817.1 CDS Acife_1336 NC_015942.1 1346533 1347267 D KEGG: pna:Pnap_1316 cyclic nucleotide-binding domain-containing protein; putative Crp/Fnr family transcriptional regulator 1346533..1347267 Acidithiobacillus ferrivorans SS3 11042379 YP_004783818.1 CDS Acife_1337 NC_015942.1 1347292 1349235 R TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; KEGG: geb:GM18_2096 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; response regulator receiver modulated diguanylate cyclase/phosphodiesterase complement(1347292..1349235) Acidithiobacillus ferrivorans SS3 11042380 YP_004783819.1 CDS Acife_1338 NC_015942.1 1349238 1351334 R TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; Signal transduction response regulator, receiver region; KEGG: sfr:Sfri_1019 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; PAS; Signal transduction response regulator, receiver region; PAS/PAC sensor hybrid histidine kinase complement(1349238..1351334) Acidithiobacillus ferrivorans SS3 11044218 YP_004783820.1 CDS Acife_1340 NC_015942.1 1351672 1352313 D PFAM: Methyltransferase type 11; KEGG: afr:AFE_0759 methyltransferase, putative; type 11 methyltransferase 1351672..1352313 Acidithiobacillus ferrivorans SS3 11042382 YP_004783821.1 CDS Acife_1342 NC_015942.1 1352532 1353509 D KEGG: afr:AFE_2420 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein; cation diffusion facilitator family transporter 1352532..1353509 Acidithiobacillus ferrivorans SS3 11042383 YP_004783822.1 CDS Acife_1343 NC_015942.1 1353686 1354426 D KEGG: tkm:TK90_0757 beta-lactamase domain protein; beta-lactamase domain-containing protein 1353686..1354426 Acidithiobacillus ferrivorans SS3 11042384 YP_004783823.1 CDS Acife_1344 NC_015942.1 1354423 1354779 D KEGG: afe:Lferr_2267 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; regulatory protein ArsR 1354423..1354779 Acidithiobacillus ferrivorans SS3 11044220 YP_004783824.1 CDS Acife_1345 NC_015942.1 1354776 1356047 D PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_2642 hypothetical protein; major facilitator superfamily protein 1354776..1356047 Acidithiobacillus ferrivorans SS3 11042385 YP_004783825.1 CDS Acife_1347 NC_015942.1 1356337 1356600 R manually curated; KEGG: afr:AFE_2811 lipoprotein, putative; lipoprotein complement(1356337..1356600) Acidithiobacillus ferrivorans SS3 11044221 YP_004783826.1 CDS Acife_1348 NC_015942.1 1356654 1357322 R KEGG: afr:AFE_2114 hypothetical protein; TIGRFAM: Hopanoid biosynthesis-associated membrane protein HpnM; PFAM: Toluene tolerance; hopanoid biosynthesis associated membrane protein HpnM complement(1356654..1357322) Acidithiobacillus ferrivorans SS3 11042387 YP_004783827.1 CDS Acife_1349 NC_015942.1 1357359 1357520 R KEGG: hch:HCH_04387 hypothetical protein; HAMAP: Protein of unknown function DUF1328; PFAM: Protein of unknown function DUF1328; hypothetical protein complement(1357359..1357520) Acidithiobacillus ferrivorans SS3 11042388 YP_004783828.1 CDS Acife_1350 NC_015942.1 1357587 1357757 R PFAM: CsbD-like; KEGG: mms:mma_1042 hypothetical protein; CsbD family protein complement(1357587..1357757) Acidithiobacillus ferrivorans SS3 11044222 YP_004783829.1 CDS Acife_1352 NC_015942.1 1358068 1358298 R hypothetical protein complement(1358068..1358298) Acidithiobacillus ferrivorans SS3 11042390 YP_004783830.1 CDS Acife_1353 NC_015942.1 1358343 1358603 R hypothetical protein complement(1358343..1358603) Acidithiobacillus ferrivorans SS3 11044223 YP_004783831.1 CDS Acife_1354 NC_015942.1 1359284 1359535 D KEGG: nit:NAL212_1800 transposase mutator type; hypothetical protein 1359284..1359535 Acidithiobacillus ferrivorans SS3 11042391 YP_004783832.1 CDS Acife_1355 NC_015942.1 1359791 1361818 D SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; TIGRFAM: Excinuclease ABC, B subunit; KEGG: afr:AFE_0845 excinuclease ABC, B subunit; HAMAP: Excinuclease ABC, B subunit; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein; UvrABC system protein B 1359791..1361818 Acidithiobacillus ferrivorans SS3 11042393 YP_004783833.1 CDS Acife_1356 NC_015942.1 1361926 1362975 D PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; KEGG: afr:AFE_0846 alcohol dehydrogenase, zinc-containing; Alcohol dehydrogenase GroES domain-containing protein 1361926..1362975 Acidithiobacillus ferrivorans SS3 11042394 YP_004783834.1 CDS Acife_1357 NC_015942.1 1363194 1364834 D TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: afr:AFE_0847 CTP synthetase; PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; CTP synthase 1363194..1364834 Acidithiobacillus ferrivorans SS3 11044224 YP_004783835.1 CDS Acife_1358 NC_015942.1 1364831 1365676 D TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; HAMAP: 3-deoxy-8-phosphooctulonate synthase; KEGG: afr:AFE_0848 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; 2-dehydro-3-deoxyphosphooctonate aldolase 1364831..1365676 Acidithiobacillus ferrivorans SS3 11042395 YP_004783836.1 CDS Acife_1359 NC_015942.1 1365673 1366953 D TIGRFAM: Enolase; HAMAP: Enolase; KEGG: afr:AFE_0849 phosphopyruvate hydratase; PFAM: Enolase, C-terminal; Enolase, N-terminal; enolase 1365673..1366953 Acidithiobacillus ferrivorans SS3 11042396 YP_004783837.1 CDS Acife_1360 NC_015942.1 1367008 1367373 D PFAM: Septum formation initiator; KEGG: afr:AFE_0850 septum formation initiator family protein; septum formation initiator 1367008..1367373 Acidithiobacillus ferrivorans SS3 11044225 YP_004783838.1 CDS Acife_1361 NC_015942.1 1367423 1367983 R TIGRFAM: Translation elongation factor P; HAMAP: Translation elongation factor P; KEGG: afr:AFE_0851 translation elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor P/YeiP, central; Translation elongation factor, KOW-like; elongation factor P complement(1367423..1367983) Acidithiobacillus ferrivorans SS3 11042397 YP_004783839.1 CDS Acife_1362 NC_015942.1 1368073 1368375 D PFAM: Protein of unknown function DUF971; KEGG: afr:AFE_0852 hypothetical protein; hypothetical protein 1368073..1368375 Acidithiobacillus ferrivorans SS3 11042398 YP_004783840.1 CDS Acife_1363 NC_015942.1 1368408 1370279 D SMART: Excinuclease ABC, C subunit, N-terminal; TIGRFAM: Excinuclease ABC, C subunit; KEGG: afe:Lferr_0979 excinuclease ABC subunit C; HAMAP: UvrABC system protein C; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; UvrABC system protein C 1368408..1370279 Acidithiobacillus ferrivorans SS3 11044226 YP_004783841.1 CDS Acife_1364 NC_015942.1 1370282 1370869 D KEGG: afr:AFE_0854 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1370282..1370869 Acidithiobacillus ferrivorans SS3 11042399 YP_004783842.1 CDS Acife_1365 NC_015942.1 1371168 1371323 D hypothetical protein 1371168..1371323 Acidithiobacillus ferrivorans SS3 11042402 YP_004783843.1 CDS Acife_1366 NC_015942.1 1371311 1372288 D PFAM: tRNA-dihydrouridine synthase; KEGG: afr:AFE_2027 tRNA-dihydrouridine synthase A; dihydrouridine synthase DuS 1371311..1372288 Acidithiobacillus ferrivorans SS3 11042403 YP_004783844.1 CDS Acife_1367 NC_015942.1 1372292 1372585 R KEGG: afr:AFE_2026 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; regulatory protein ArsR complement(1372292..1372585) Acidithiobacillus ferrivorans SS3 11042404 YP_004783845.1 CDS Acife_1368 NC_015942.1 1372855 1374318 R KEGG: afr:AFE_2025 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: Glucose-6-phosphate dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase complement(1372855..1374318) Acidithiobacillus ferrivorans SS3 11042405 YP_004783846.1 CDS Acife_1369 NC_015942.1 1374319 1375239 R KEGG: afr:AFE_2024 6-phosphogluconate dehydrogenase-like protein; TIGRFAM: 6-phosphogluconate dehydrogenase related protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal; 6-phosphogluconate dehydrogenase complement(1374319..1375239) Acidithiobacillus ferrivorans SS3 11044227 YP_004783847.1 CDS Acife_1370 NC_015942.1 1375367 1376548 D TIGRFAM: Phosphoribosylglycinamide formyltransferase 2; HAMAP: Phosphoribosylglycinamide formyltransferase 2; KEGG: afr:AFE_2023 phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; phosphoribosylglycinamide formyltransferase 2 1375367..1376548 Acidithiobacillus ferrivorans SS3 11042406 YP_004783848.1 CDS Acife_1371 NC_015942.1 1376594 1377832 R PFAM: Aminotransferase, class I/II; KEGG: afr:AFE_2022 aspartate aminotransferase; class I and II aminotransferase complement(1376594..1377832) Acidithiobacillus ferrivorans SS3 11042407 YP_004783849.1 CDS Acife_1372 NC_015942.1 1378181 1380022 D KEGG: pla:Plav_2096 lipid ABC transporter ATPase/inner membrane protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region; SMART: ATPase, AAA+ type, core; ABC transporter 1378181..1380022 Acidithiobacillus ferrivorans SS3 11044228 YP_004783850.1 CDS Acife_1373 NC_015942.1 1380147 1380527 D KEGG: afe:Lferr_1685 hypothetical protein; hypothetical protein 1380147..1380527 Acidithiobacillus ferrivorans SS3 11042408 YP_004783851.1 CDS Acife_1374 NC_015942.1 1380543 1381520 D PFAM: Uncharacterised protein family UPF0145; KEGG: afr:AFE_2019 hypothetical protein; hypothetical protein 1380543..1381520 Acidithiobacillus ferrivorans SS3 11042409 YP_004783852.1 CDS Acife_1375 NC_015942.1 1381517 1382341 D PFAM: Uncharacterised protein family UPF0145; KEGG: afr:AFE_2018 hypothetical protein; hypothetical protein 1381517..1382341 Acidithiobacillus ferrivorans SS3 11042410 YP_004783853.1 CDS Acife_1376 NC_015942.1 1382381 1383115 D PFAM: PspA/IM30; KEGG: afr:AFE_2017 PspA/IM30 family; phage shock protein PspA 1382381..1383115 Acidithiobacillus ferrivorans SS3 11042411 YP_004783854.1 CDS Acife_1377 NC_015942.1 1383378 1383950 D PFAM: Protein of unknown function DUF1643; KEGG: mae:Maeo_0922 hypothetical protein; hypothetical protein 1383378..1383950 Acidithiobacillus ferrivorans SS3 11042413 YP_004783855.1 CDS Acife_1378 NC_015942.1 1383963 1384775 R PFAM: Protein of unknown function DUF202; KEGG: afr:AFE_1554 hypothetical protein; hypothetical protein complement(1383963..1384775) Acidithiobacillus ferrivorans SS3 11042414 YP_004783856.1 CDS Acife_1379 NC_015942.1 1385525 1386868 D KEGG: afe:Lferr_0031 hypothetical protein; hypothetical protein 1385525..1386868 Acidithiobacillus ferrivorans SS3 11042416 YP_004783857.1 CDS Acife_1380 NC_015942.1 1386919 1387416 D KEGG: amv:ACMV_33690 hypothetical protein; hypothetical protein 1386919..1387416 Acidithiobacillus ferrivorans SS3 11042417 YP_004783858.1 CDS Acife_1381 NC_015942.1 1387503 1388021 D KEGG: tdn:Suden_1309 hypothetical protein; hypothetical protein 1387503..1388021 Acidithiobacillus ferrivorans SS3 11042418 YP_004783859.1 CDS Acife_1383 NC_015942.1 1388329 1389342 D KEGG: afr:AFE_0043 periplasmic solute-binding protein, putative; periplasmic solute-binding protein 1388329..1389342 Acidithiobacillus ferrivorans SS3 11042420 YP_004783860.1 CDS Acife_1384 NC_015942.1 1389353 1390441 D PFAM: TQO small subunit DoxD; KEGG: afe:Lferr_0045 TQO small subunit DoxD; TQO small subunit DoxD domain-containing protein 1389353..1390441 Acidithiobacillus ferrivorans SS3 11042421 YP_004783861.1 CDS Acife_1385 NC_015942.1 1390677 1391900 R PFAM: Protein of unknown function methylase putative; KEGG: afe:Lferr_1014 methyltransferase small; hypothetical protein complement(1390677..1391900) Acidithiobacillus ferrivorans SS3 11042422 YP_004783862.1 CDS Acife_1386 NC_015942.1 1392062 1393114 D TIGRFAM: Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; HAMAP: Methylthioribose-1-phosphate isomerase; KEGG: afr:AFE_0893 translation initiation factor, putative, aIF-2BI family; PFAM: Initiation factor 2B related; methylthioribose-1-phosphate isomerase 1392062..1393114 Acidithiobacillus ferrivorans SS3 11042423 YP_004783863.1 CDS Acife_1387 NC_015942.1 1393171 1395708 D TIGRFAM: DNA gyrase, subunit A; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; KEGG: afr:AFE_0894 DNA gyrase, A subunit; SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase subunit A 1393171..1395708 Acidithiobacillus ferrivorans SS3 11044230 YP_004783864.1 CDS Acife_1388 NC_015942.1 1395715 1396803 D TIGRFAM: Phosphoserine aminotransferase; HAMAP: Phosphoserine aminotransferase; KEGG: afr:AFE_0895 phosphoserine aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase; phosphoserine aminotransferase 1395715..1396803 Acidithiobacillus ferrivorans SS3 11042424 YP_004783865.1 CDS Acife_1389 NC_015942.1 1396819 1397895 D KEGG: afr:AFE_0897 chorismate mutase/prephenate dehydratase; TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT; chorismate mutase 1396819..1397895 Acidithiobacillus ferrivorans SS3 11042425 YP_004783866.1 CDS Acife_1390 NC_015942.1 1397895 1398992 D TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: afr:AFE_0898 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II; histidinol-phosphate aminotransferase 1397895..1398992 Acidithiobacillus ferrivorans SS3 11042426 YP_004783867.1 CDS Acife_1391 NC_015942.1 1398997 1400013 D KEGG: afr:AFE_0899 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 1398997..1400013 Acidithiobacillus ferrivorans SS3 11042427 YP_004783868.1 CDS Acife_1392 NC_015942.1 1400015 1400890 D PFAM: Prephenate dehydrogenase; KEGG: afr:AFE_0900 prephenate dehydrogenase; prephenate dehydrogenase 1400015..1400890 Acidithiobacillus ferrivorans SS3 11044231 YP_004783869.1 CDS Acife_1393 NC_015942.1 1400894 1402195 D TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; KEGG: afr:AFE_0901 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; 3-phosphoshikimate 1-carboxyvinyltransferase 1400894..1402195 Acidithiobacillus ferrivorans SS3 11042428 YP_004783870.1 CDS Acife_1394 NC_015942.1 1402192 1402872 D TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: afr:AFE_0902 cytidylate kinase; PFAM: Cytidylate kinase region; cytidylate kinase 1402192..1402872 Acidithiobacillus ferrivorans SS3 11042429 YP_004783871.1 CDS Acife_1395 NC_015942.1 1402951 1404657 D KEGG: afr:AFE_0903 ribosomal protein S1; TIGRFAM: Ribosomal S1 synthesis/modification protein; PFAM: Ribosomal protein S1, RNA binding domain; 30S ribosomal protein S1 1402951..1404657 Acidithiobacillus ferrivorans SS3 11042430 YP_004783872.1 CDS Acife_1396 NC_015942.1 1404821 1405126 D TIGRFAM: Integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein; KEGG: afr:AFE_0905 integration host factor, beta subunit; SMART: Histone-like bacterial DNA-binding protein; integration host factor subunit beta 1404821..1405126 Acidithiobacillus ferrivorans SS3 11044232 YP_004783873.1 CDS Acife_1397 NC_015942.1 1405127 1406296 D KEGG: afe:Lferr_1027 hypothetical protein; hypothetical protein 1405127..1406296 Acidithiobacillus ferrivorans SS3 11042431 YP_004783874.1 CDS Acife_1398 NC_015942.1 1406293 1407009 D KEGG: afr:AFE_0907 orotidine 5`-phosphate decarboxylase; TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 1, core; PFAM: Orotidine 5'-phosphate decarboxylase, core; orotidine 5'-phosphate decarboxylase 1406293..1407009 Acidithiobacillus ferrivorans SS3 11042432 YP_004783875.1 CDS Acife_1399 NC_015942.1 1407075 1407662 D TIGRFAM: Orotate phosphoribosyltransferase, Thermus type; HAMAP: Orotate phosphoribosyltransferase; KEGG: afe:Lferr_1029 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; orotate phosphoribosyltransferase 1407075..1407662 Acidithiobacillus ferrivorans SS3 11042433 YP_004783876.1 CDS Acife_1400 NC_015942.1 1407736 1409022 D TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: afr:AFE_0909 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type; Trigger factor, C-terminal, bacterial; Trigger factor 1407736..1409022 Acidithiobacillus ferrivorans SS3 11042434 YP_004783877.1 CDS Acife_1401 NC_015942.1 1409068 1409712 D TIGRFAM: Peptidase S14, ClpP; HAMAP: ATP-dependent Clp protease proteolytic subunit; KEGG: afr:AFE_0910 ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: Peptidase S14, ClpP; ATP-dependent Clp protease proteolytic subunit 1409068..1409712 Acidithiobacillus ferrivorans SS3 11042435 YP_004783878.1 CDS Acife_1402 NC_015942.1 1409731 1411002 D SMART: ATPase, AAA+ type, core; TIGRFAM: Clp protease, ATP-binding subunit ClpX; KEGG: afr:AFE_0911 ATP-dependent Clp protease, ATP-binding subunit ClpX; HAMAP: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase associated with various cellular activities, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal; ATP-dependent Clp protease ATP-binding subunit clpX 1409731..1411002 Acidithiobacillus ferrivorans SS3 11044233 YP_004783879.1 CDS Acife_1403 NC_015942.1 1411090 1413522 D TIGRFAM: Peptidase S16, ATP-dependent protease La; PFAM: Peptidase S16, lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core; KEGG: afe:Lferr_1033 ATP-dependent protease La; SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; anti-sigma H sporulation factor LonB 1411090..1413522 Acidithiobacillus ferrivorans SS3 11042436 YP_004783880.1 CDS Acife_1404 NC_015942.1 1413766 1414038 D KEGG: afr:AFE_0914 DNA-binding protein HU; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 1413766..1414038 Acidithiobacillus ferrivorans SS3 11042437 YP_004783881.1 CDS Acife_1405 NC_015942.1 1414378 1415946 D KEGG: afe:Lferr_1036 hypothetical protein; hypothetical protein 1414378..1415946 Acidithiobacillus ferrivorans SS3 11044235 YP_004783882.1 CDS Acife_1406 NC_015942.1 1416004 1416447 R PFAM: Protein of unknown function DUF2147; KEGG: afr:AFE_1867 hypothetical protein; hypothetical protein complement(1416004..1416447) Acidithiobacillus ferrivorans SS3 11042439 YP_004783883.1 CDS Acife_1407 NC_015942.1 1416785 1417405 D TIGRFAM: Peptidase S24, LexA repressor; HAMAP: LexA repressor; KEGG: afr:AFE_1868 LexA repressor; PFAM: LexA DNA-binding region; Peptidase S24/S26A/S26B, conserved region; SOS-response transcriptional repressor, LexA 1416785..1417405 Acidithiobacillus ferrivorans SS3 11042440 YP_004783884.1 CDS Acife_1408 NC_015942.1 1417603 1418454 D KEGG: afe:Lferr_1547 hypothetical protein; hypothetical protein 1417603..1418454 Acidithiobacillus ferrivorans SS3 11042441 YP_004783885.1 CDS Acife_1409 NC_015942.1 1418451 1421078 D KEGG: afr:AFE_1873 aminopeptidase N; TIGRFAM: Peptidase M1, alanyl aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; aminopeptidase N 1418451..1421078 Acidithiobacillus ferrivorans SS3 11044236 YP_004783886.1 CDS Acife_1410 NC_015942.1 1421110 1421451 D hypothetical protein 1421110..1421451 Acidithiobacillus ferrivorans SS3 11042442 YP_004783887.1 CDS Acife_1411 NC_015942.1 1421464 1422933 R PFAM: Adenylate cyclase; CHAD; KEGG: afr:AFE_1874 adenylate cyclase; adenylate cyclase complement(1421464..1422933) Acidithiobacillus ferrivorans SS3 11042443 YP_004783888.1 CDS Acife_1412 NC_015942.1 1422917 1423555 R KEGG: afr:AFE_1875 ParA-like protein; ParA-like protein complement(1422917..1423555) Acidithiobacillus ferrivorans SS3 11042444 YP_004783889.1 CDS Acife_1413 NC_015942.1 1423568 1425673 R TIGRFAM: polyphosphate kinase 1; HAMAP: Polyphosphate kinase; KEGG: afr:AFE_1876 polyphosphate kinase; PFAM: Polyphosphate kinase; polyphosphate kinase complement(1423568..1425673) Acidithiobacillus ferrivorans SS3 11042445 YP_004783890.1 CDS Acife_1414 NC_015942.1 1425670 1426533 R KEGG: afr:AFE_1877 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; bifunctional protein folD complement(1425670..1426533) Acidithiobacillus ferrivorans SS3 11044237 YP_004783891.1 CDS Acife_1415 NC_015942.1 1426736 1429816 R PFAM: Acriflavin resistance protein; KEGG: afr:AFE_1878 transporter, AcrB/AcrD/AcrF family; acriflavin resistance protein complement(1426736..1429816) Acidithiobacillus ferrivorans SS3 11042446 YP_004783892.1 CDS Acife_1416 NC_015942.1 1429827 1430918 R KEGG: afr:AFE_1879 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit complement(1429827..1430918) Acidithiobacillus ferrivorans SS3 11042447 YP_004783893.1 CDS Acife_1417 NC_015942.1 1430962 1432506 R KEGG: afr:AFE_1880 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein complement(1430962..1432506) Acidithiobacillus ferrivorans SS3 11042448 YP_004783894.1 CDS Acife_1418 NC_015942.1 1432727 1433512 D PFAM: Tetratricopeptide TPR2; KEGG: afr:AFE_1881 hypothetical protein; hypothetical protein 1432727..1433512 Acidithiobacillus ferrivorans SS3 11044238 YP_004783895.1 CDS Acife_1419 NC_015942.1 1433579 1434157 R TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: afr:AFE_1882 maf protein; PFAM: Maf-like protein; septum formation protein Maf complement(1433579..1434157) Acidithiobacillus ferrivorans SS3 11042449 YP_004783896.1 CDS Acife_1420 NC_015942.1 1434170 1436959 R KEGG: afr:AFE_1883 phosphoenolpyruvate carboxylase; HAMAP: Phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase complement(1434170..1436959) Acidithiobacillus ferrivorans SS3 11044239 YP_004783897.1 CDS Acife_1421 NC_015942.1 1437335 1437601 D TIGRFAM: Host factor Hfq; HAMAP: Protein hfq; KEGG: afr:AFE_1884 RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; protein hfq 1437335..1437601 Acidithiobacillus ferrivorans SS3 11042450 YP_004783898.1 CDS Acife_1422 NC_015942.1 1437601 1438923 D manually curated; TIGRFAM: GTP-binding protein, HflX; KEGG: afr:AFE_1885 GTP-binding protein HflX; PFAM: GTP-binding protein, HSR1-related; GTP-binding proten HflX 1437601..1438923 Acidithiobacillus ferrivorans SS3 11042451 YP_004783899.1 CDS Acife_1423 NC_015942.1 1438938 1440134 D TIGRFAM: HflK; PFAM: Band 7 protein; KEGG: afr:AFE_1886 HflK protein; SMART: Band 7 protein; HflK protein 1438938..1440134 Acidithiobacillus ferrivorans SS3 11044240 YP_004783900.1 CDS Acife_1424 NC_015942.1 1440131 1441003 D TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: afr:AFE_1887 HflC protein; SMART: Band 7 protein; HflC protein 1440131..1441003 Acidithiobacillus ferrivorans SS3 11042452 YP_004783901.1 CDS Acife_1425 NC_015942.1 1441000 1442202 D KEGG: afr:AFE_1888 ATP phosphoribosyltransferase regulatory subunit; HAMAP: ATP phosphoribosyltransferase regulatory subunit; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; ATP phosphoribosyltransferase regulatory subunit 1441000..1442202 Acidithiobacillus ferrivorans SS3 11044241 YP_004783902.1 CDS Acife_1426 NC_015942.1 1442246 1443535 D SMART: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; KEGG: afr:AFE_1889 adenylosuccinate synthetase; HAMAP: Adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; adenylosuccinate synthetase 1442246..1443535 Acidithiobacillus ferrivorans SS3 11042453 YP_004783903.1 CDS Acife_1427 NC_015942.1 1443639 1443911 D KEGG: afr:AFE_2732 iron oxidase; iron oxidase 1443639..1443911 Acidithiobacillus ferrivorans SS3 11042454 YP_004783904.1 CDS Acife_1428 NC_015942.1 1444361 1446601 D TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; PFAM: Ribonuclease II/R; Ribonuclease B, OB region N-terminal; Ribonuclease R winged-helix domain; Ribosomal protein S1, RNA binding domain; KEGG: afr:AFE_1891 ribonuclease R; SMART: Cold shock protein; ribonuclease R 1444361..1446601 Acidithiobacillus ferrivorans SS3 11042456 YP_004783905.1 CDS Acife_1429 NC_015942.1 1446656 1447441 R KEGG: afr:AFE_1892 hypothetical protein; TIGRFAM: polyphosphate kinase 2; PFAM: Polyphosphate kinase 2; polyphosphate kinase 2 complement(1446656..1447441) Acidithiobacillus ferrivorans SS3 11044242 YP_004783906.1 CDS Acife_1430 NC_015942.1 1447474 1448862 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: afr:AFE_1893 dihydrolipoamide dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1447474..1448862) Acidithiobacillus ferrivorans SS3 11042457 YP_004783907.1 CDS Acife_1431 NC_015942.1 1448965 1449702 R PFAM: Molybdopterin binding; KEGG: afr:AFE_1894 hypothetical protein; molybdopterin binding domain-containing protein complement(1448965..1449702) Acidithiobacillus ferrivorans SS3 11042458 YP_004783908.1 CDS Acife_1432 NC_015942.1 1449699 1450364 R KEGG: afr:AFE_1896 phosphoribosylglycinamide formyltransferase; TIGRFAM: Phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal; phosphoribosylglycinamide formyltransferase complement(1449699..1450364) Acidithiobacillus ferrivorans SS3 11042459 YP_004783909.1 CDS Acife_1433 NC_015942.1 1450357 1451394 R KEGG: afe:Lferr_1573 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; phosphoribosylformylglycinamidine cyclo-ligase complement(1450357..1451394) Acidithiobacillus ferrivorans SS3 11042460 YP_004783910.1 CDS Acife_1434 NC_015942.1 1451539 1452156 R PFAM: Manganese/iron superoxide dismutase, C-terminal; KEGG: afr:AFE_1898 superoxide dismutase; Manganese/iron superoxide dismutase complement(1451539..1452156) Acidithiobacillus ferrivorans SS3 11042461 YP_004783911.1 CDS Acife_1435 NC_015942.1 1452314 1452862 D KEGG: afr:AFE_1900 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1452314..1452862 Acidithiobacillus ferrivorans SS3 11044243 YP_004783912.1 CDS Acife_1436 NC_015942.1 1452859 1453575 D KEGG: afe:Lferr_1576 DnaA regulatory inactivator Hda; TIGRFAM: Chromosomal replication control, regulator Hda; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); DnaA regulatory inactivator Hda 1452859..1453575 Acidithiobacillus ferrivorans SS3 11042462 YP_004783913.1 CDS Acife_1437 NC_015942.1 1453572 1454453 D KEGG: afe:Lferr_1577 ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related; ribonuclease BN 1453572..1454453 Acidithiobacillus ferrivorans SS3 11042463 YP_004783914.1 CDS Acife_1438 NC_015942.1 1454550 1455011 D PFAM: Protein of unknown function DUF177; KEGG: afr:AFE_1903 hypothetical protein; hypothetical protein 1454550..1455011 Acidithiobacillus ferrivorans SS3 11042464 YP_004783915.1 CDS Acife_1439 NC_015942.1 1455052 1455237 D TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: afr:AFE_1904 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; 50S ribosomal protein L32 1455052..1455237 Acidithiobacillus ferrivorans SS3 11042465 YP_004783916.1 CDS Acife_1440 NC_015942.1 1455275 1456300 D TIGRFAM: Phospholipid biosynthesis protein, PlsX like; HAMAP: Phospholipid biosynthesis protein, PlsX like; KEGG: afr:AFE_1905 fatty acid/phospholipid synthesis protein PlsX; PFAM: Fatty acid synthesis plsX protein; phosphate acyltransferase 1455275..1456300 Acidithiobacillus ferrivorans SS3 11042466 YP_004783917.1 CDS Acife_1441 NC_015942.1 1456297 1457241 D TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: afr:AFE_1906 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-ACP synthase III 1456297..1457241 Acidithiobacillus ferrivorans SS3 11042467 YP_004783918.1 CDS Acife_1442 NC_015942.1 1457280 1458215 D KEGG: afr:AFE_1907 malonyl CoA-acyl carrier protein transacylase; TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; malonyl CoA-acyl carrier protein transacylase 1457280..1458215 Acidithiobacillus ferrivorans SS3 11044244 YP_004783919.1 CDS Acife_1443 NC_015942.1 1458215 1458964 D KEGG: afr:AFE_1908 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 1458215..1458964 Acidithiobacillus ferrivorans SS3 11042468 YP_004783920.1 CDS Acife_1444 NC_015942.1 1459049 1459297 D TIGRFAM: Acyl carrier protein (ACP); HAMAP: Acyl carrier protein (ACP); KEGG: afr:AFE_1909 acyl carrier protein; PFAM: Phosphopantetheine-binding; acyl carrier protein 1459049..1459297 Acidithiobacillus ferrivorans SS3 11042469 YP_004783921.1 CDS Acife_1445 NC_015942.1 1459336 1460577 D KEGG: afr:AFE_1910 3-oxoacyl-(acyl-carrier-protein) synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; 3-oxoacyl-ACP synthase II 1459336..1460577 Acidithiobacillus ferrivorans SS3 11042470 YP_004783922.1 CDS Acife_1446 NC_015942.1 1460586 1461440 D KEGG: afr:AFE_1911 4-amino-4-deoxychorismate lyase, putative; TIGRFAM: Aminodeoxychorismate lyase, class IV; PFAM: Aminotransferase, class IV; aminodeoxychorismate lyase 1460586..1461440 Acidithiobacillus ferrivorans SS3 11042471 YP_004783923.1 CDS Acife_1447 NC_015942.1 1461437 1462450 D KEGG: afe:Lferr_1587 aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family YceG-like; PFAM: Uncharacterised protein family YceG-like; aminodeoxychorismate lyase 1461437..1462450 Acidithiobacillus ferrivorans SS3 11044245 YP_004783924.1 CDS Acife_1448 NC_015942.1 1462447 1463097 D TIGRFAM: Thymidylate kinase; HAMAP: Thymidylate kinase; KEGG: afr:AFE_1913 thymidylate kinase; PFAM: Thymidylate kinase-like; thymidylate kinase 1462447..1463097 Acidithiobacillus ferrivorans SS3 11042472 YP_004783925.1 CDS Acife_1449 NC_015942.1 1463094 1464095 D KEGG: afr:AFE_1914 DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta' 1463094..1464095 Acidithiobacillus ferrivorans SS3 11042473 YP_004783926.1 CDS Acife_1450 NC_015942.1 1464079 1464435 D PFAM: Type IV pilus assembly PilZ; KEGG: afr:AFE_1915 type IV pilus assembly protein PilZ, putative; type IV pilus assembly PilZ 1464079..1464435 Acidithiobacillus ferrivorans SS3 11042474 YP_004783927.1 CDS Acife_1453 NC_015942.1 1465642 1466397 D hypothetical protein 1465642..1466397 Acidithiobacillus ferrivorans SS3 11042478 YP_004783928.1 CDS Acife_1454 NC_015942.1 1466833 1467048 D KEGG: rrs:RoseRS_1787 hypothetical protein; hypothetical protein 1466833..1467048 Acidithiobacillus ferrivorans SS3 11044246 YP_004783929.1 CDS Acife_1455 NC_015942.1 1467045 1467260 D PFAM: YcfA-like; KEGG: cph:Cpha266_1441 YcfA family protein; YcfA family protein 1467045..1467260 Acidithiobacillus ferrivorans SS3 11044247 YP_004783930.1 CDS Acife_1456 NC_015942.1 1467775 1468200 R PFAM: Protein of unknown function DUF302; KEGG: aca:ACP_2485 hypothetical protein; hypothetical protein complement(1467775..1468200) Acidithiobacillus ferrivorans SS3 11042479 YP_004783931.1 CDS Acife_1457 NC_015942.1 1468202 1468900 R KEGG: eba:ebA6282 nitrate reductase, gamma subunit; TIGRFAM: Nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; respiratory nitrate reductase subunit gamma complement(1468202..1468900) Acidithiobacillus ferrivorans SS3 11042480 YP_004783932.1 CDS Acife_1458 NC_015942.1 1468897 1469442 R KEGG: tbd:Tbd_1405 respiratory nitrate reductase chaperone NarJ; TIGRFAM: Nitrate reductase, delta subunit; PFAM: Nitrate reductase, delta subunit; nitrate reductase molybdenum cofactor assembly chaperone complement(1468897..1469442) Acidithiobacillus ferrivorans SS3 11042481 YP_004783933.1 CDS Acife_1459 NC_015942.1 1469445 1471004 R TIGRFAM: Nitrate reductase, beta subunit; KEGG: tbd:Tbd_1404 respiratory nitrate reductase beta subunit; nitrate reductase subunit beta complement(1469445..1471004) Acidithiobacillus ferrivorans SS3 11042482 YP_004783934.1 CDS Acife_1460 NC_015942.1 1471001 1474765 R KEGG: eba:ebA6286 nitrate reductase, alpha chain; TIGRFAM: Nitrate reductase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; nitrate reductase subunit alpha complement(1471001..1474765) Acidithiobacillus ferrivorans SS3 11044248 YP_004783935.1 CDS Acife_1461 NC_015942.1 1474815 1475999 R PFAM: Major facilitator superfamily MFS-1; KEGG: amv:ACMV_16320 putative major facilitator superfamily transporter; major facilitator superfamily protein complement(1474815..1475999) Acidithiobacillus ferrivorans SS3 11044249 YP_004783936.1 CDS Acife_1462 NC_015942.1 1476361 1476894 D PFAM: Haemerythrin/HHE cation-binding motif; KEGG: bvi:Bcep1808_6183 hemerythrin HHE cation binding domain-containing protein; Hemerythrin HHE cation binding domain-containing protein 1476361..1476894 Acidithiobacillus ferrivorans SS3 11042483 YP_004783937.1 CDS Acife_1463 NC_015942.1 1477009 1477476 D PFAM: Protein of unknown function DUF1971; KEGG: afr:AFE_1844 ferredoxin; hypothetical protein 1477009..1477476 Acidithiobacillus ferrivorans SS3 11042484 YP_004783938.1 CDS Acife_1464 NC_015942.1 1477607 1478257 D PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: nwa:Nwat_0016 glutathione S-transferase domain-containing protein; glutathione S-transferase domain-containing protein 1477607..1478257 Acidithiobacillus ferrivorans SS3 11042485 YP_004783939.1 CDS Acife_1465 NC_015942.1 1478374 1478613 D KEGG: afr:AFE_1845 hypothetical protein; hypothetical protein 1478374..1478613 Acidithiobacillus ferrivorans SS3 11042486 YP_004783940.1 CDS Acife_1466 NC_015942.1 1478606 1479724 D PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: afr:AFE_1847 C4-dicarboxylate transporter/malic acid transport protein, putative; C4-dicarboxylate transporter/malic acid transport protein 1478606..1479724 Acidithiobacillus ferrivorans SS3 11044250 YP_004783941.1 CDS Acife_1467 NC_015942.1 1479884 1480846 D KEGG: afr:AFE_1028 hypothetical protein; hypothetical protein 1479884..1480846 Acidithiobacillus ferrivorans SS3 11042487 YP_004783942.1 CDS Acife_1468 NC_015942.1 1481344 1481550 R KEGG: afr:AFE_1545 molybdenum-pterin binding protein; TIGRFAM: Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1; molybdenum-pterin binding protein complement(1481344..1481550) Acidithiobacillus ferrivorans SS3 11042488 YP_004783943.1 CDS Acife_1469 NC_015942.1 1481689 1483017 R KEGG: afr:AFE_1497 hypothetical protein; hypothetical protein complement(1481689..1483017) Acidithiobacillus ferrivorans SS3 11042489 YP_004783944.1 CDS Acife_1471 NC_015942.1 1485257 1485967 R KEGG: afr:AFE_1997 autoinducer-binding transcriptional regulator, LuxR family; PFAM: Autoinducer-binding; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; LuxR family transcriptional regulator complement(1485257..1485967) Acidithiobacillus ferrivorans SS3 11042491 YP_004783945.1 CDS Acife_1472 NC_015942.1 1486433 1486981 D KEGG: azo:azo2571 hypothetical protein; hypothetical protein 1486433..1486981 Acidithiobacillus ferrivorans SS3 11042492 YP_004783946.1 CDS Acife_1473 NC_015942.1 1487081 1487440 D KEGG: glo:Glov_0119 hypothetical protein; hypothetical protein 1487081..1487440 Acidithiobacillus ferrivorans SS3 11042493 YP_004783947.1 CDS Acife_1474 NC_015942.1 1487493 1488794 D TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain; KEGG: mag:amb4010 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; tryptophan synthase beta chain 1487493..1488794 Acidithiobacillus ferrivorans SS3 11044251 YP_004783948.1 CDS Acife_1477 NC_015942.1 1490054 1490995 R PFAM: Protein of unknown function DUF6, transmembrane; KEGG: ypy:YPK_1524 hypothetical protein; hypothetical protein complement(1490054..1490995) Acidithiobacillus ferrivorans SS3 11042495 YP_004783949.1 CDS Acife_1478 NC_015942.1 1491270 1491617 D KEGG: btb:BMB171_C1784 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; regulatory protein ArsR 1491270..1491617 Acidithiobacillus ferrivorans SS3 11042496 YP_004783950.1 CDS Acife_1479 NC_015942.1 1491774 1492559 D KEGG: rah:Rahaq_4788 transcriptional regulator; transcriptional regulator 1491774..1492559 Acidithiobacillus ferrivorans SS3 11042497 YP_004783951.1 CDS Acife_1480 NC_015942.1 1492660 1493031 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: afe:Lferr_1669 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 1492660..1493031 Acidithiobacillus ferrivorans SS3 11044253 YP_004783952.1 CDS Acife_1481 NC_015942.1 1493028 1493456 D KEGG: mci:Mesci_1735 hypothetical protein; HAMAP: UPF0310 protein; PFAM: Uncharacterised protein family UPF0310; hypothetical protein 1493028..1493456 Acidithiobacillus ferrivorans SS3 11044254 YP_004783953.1 CDS Acife_1482 NC_015942.1 1493520 1494131 R PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pol:Bpro_2654 TetR family transcriptional regulator; TetR family transcriptional regulator complement(1493520..1494131) Acidithiobacillus ferrivorans SS3 11042498 YP_004783954.1 CDS Acife_1483 NC_015942.1 1494205 1494672 D PFAM: Protein of unknown function DUF1348; KEGG: aba:Acid345_2217 hypothetical protein; hypothetical protein 1494205..1494672 Acidithiobacillus ferrivorans SS3 11042499 YP_004783955.1 CDS Acife_1484 NC_015942.1 1494746 1495942 D PFAM: Major facilitator superfamily MFS-1; KEGG: sil:SPO3481 hypothetical protein; major facilitator superfamily protein 1494746..1495942 Acidithiobacillus ferrivorans SS3 11042500 YP_004783956.1 CDS Acife_1485 NC_015942.1 1496103 1497188 D TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: pfl:PFL_0930 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II; histidinol-phosphate aminotransferase 1496103..1497188 Acidithiobacillus ferrivorans SS3 11042501 YP_004783957.1 CDS Acife_1486 NC_015942.1 1497299 1497844 D KEGG: afr:AFE_2803 FMN reductase, NADPH-dependent; manually curated; PFAM: NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1497299..1497844 Acidithiobacillus ferrivorans SS3 11044255 YP_004783958.1 CDS Acife_1487 NC_015942.1 1497844 1498323 D PFAM: Polyketide cyclase/dehydrase; KEGG: afr:AFE_2804 hypothetical protein; polyketide cyclase/dehydrase 1497844..1498323 Acidithiobacillus ferrivorans SS3 11042502 YP_004783959.1 CDS Acife_1488 NC_015942.1 1498325 1498417 D hypothetical protein 1498325..1498417 Acidithiobacillus ferrivorans SS3 11042503 YP_004783960.1 CDS Acife_1490 NC_015942.1 1499279 1499938 D PFAM: Negative transcriptional regulator; KEGG: afr:AFE_2006 transcriptional regulator, putative; FMN-binding negative transcriptional regulator 1499279..1499938 Acidithiobacillus ferrivorans SS3 11042504 YP_004783961.1 CDS Acife_1491 NC_015942.1 1499935 1501140 D PFAM: ThiJ/PfpI; GCN5-related N-acetyltransferase; KEGG: afr:AFE_2005 isonitrile hydratase, putative; ThiJ/PfpI domain-containing protein 1499935..1501140 Acidithiobacillus ferrivorans SS3 11042505 YP_004783962.1 CDS Acife_1492 NC_015942.1 1501146 1501955 D KEGG: gca:Galf_1512 phenazine biosynthesis protein PhzF family; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein; PhzF family phenazine biosynthesis protein 1501146..1501955 Acidithiobacillus ferrivorans SS3 11042506 YP_004783963.1 CDS Acife_1493 NC_015942.1 1502159 1502569 D KEGG: tin:Tint_2008 glutathione-dependent formaldehyde-activating GFA; manually curated; PFAM: Glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 1502159..1502569 Acidithiobacillus ferrivorans SS3 11042507 YP_004783964.1 CDS Acife_1494 NC_015942.1 1502691 1503161 D TIGRFAM: Peptidase A8, signal peptidase II; HAMAP: Peptidase A8, signal peptidase II; KEGG: dsh:Dshi_0359 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II; lipoprotein signal peptidase 1502691..1503161 Acidithiobacillus ferrivorans SS3 11042508 YP_004783965.1 CDS Acife_1496 NC_015942.1 1503874 1504134 R KEGG: xcv:XCVd0102 hypothetical protein; hypothetical protein complement(1503874..1504134) Acidithiobacillus ferrivorans SS3 11042510 YP_004783966.1 CDS Acife_1497 NC_015942.1 1504240 1504500 R hypothetical protein complement(1504240..1504500) Acidithiobacillus ferrivorans SS3 11044257 YP_004783967.1 CDS Acife_1499 NC_015942.1 1504935 1506227 R KEGG: rpx:Rpdx1_0487 HipA N-terminal domain-containing protein; TIGRFAM: HipA, N-terminal; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; HipA N-terminal domain-containing protein complement(1504935..1506227) Acidithiobacillus ferrivorans SS3 11042512 YP_004783968.1 CDS Acife_1500 NC_015942.1 1506230 1506475 R KEGG: hba:Hbal_3181 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein complement(1506230..1506475) Acidithiobacillus ferrivorans SS3 11042513 YP_004783969.1 CDS Acife_1501 NC_015942.1 1507075 1508763 D TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase, AAA-type, core; KEGG: afr:AFE_1919 DNA polymerase III, subunits gamma and tau; SMART: ATPase, AAA+ type, core; DNA polymerase III subunits gamma and tau 1507075..1508763 Acidithiobacillus ferrivorans SS3 11044258 YP_004783970.1 CDS Acife_1502 NC_015942.1 1508790 1509113 D TIGRFAM: Uncharacterised protein family UPF0133; HAMAP: Uncharacterised protein family UPF0133; KEGG: afr:AFE_1920 hypothetical protein; PFAM: Uncharacterised protein family UPF0133; hypothetical protein 1508790..1509113 Acidithiobacillus ferrivorans SS3 11044259 YP_004783971.1 CDS Acife_1503 NC_015942.1 1509120 1509719 D KEGG: afr:AFE_1921 recombination protein RecR; PFAM: Toprim domain; Zinc finger C4-type, RecR; manually curated; TIGRFAM: RecR protein; SMART: Toprim domain, subgroup; HAMAP: Recombination protein recR; recombination protein recR 1509120..1509719 Acidithiobacillus ferrivorans SS3 11042515 YP_004783972.1 CDS Acife_1504 NC_015942.1 1509780 1510997 D PFAM: Ammonium transporter; KEGG: afr:AFE_1922 ammonium transporter family protein; ammonium transporter 1509780..1510997 Acidithiobacillus ferrivorans SS3 11042516 YP_004783973.1 CDS Acife_1505 NC_015942.1 1511000 1511851 D KEGG: afr:AFE_1923 YjeF-related protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; PFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-like protein 1511000..1511851 Acidithiobacillus ferrivorans SS3 11042517 YP_004783974.1 CDS Acife_1506 NC_015942.1 1511838 1513187 D KEGG: afr:AFE_1924 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1511838..1513187 Acidithiobacillus ferrivorans SS3 11042518 YP_004783975.1 CDS Acife_1507 NC_015942.1 1513187 1513642 D KEGG: afr:AFE_1925 CBS domain protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; CBS domain-containing membrane protein 1513187..1513642 Acidithiobacillus ferrivorans SS3 11044260 YP_004783976.1 CDS Acife_1508 NC_015942.1 1513655 1514140 D KEGG: afr:AFE_1926 conserved hypothetical protein TIGR00150; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; ATPase 1513655..1514140 Acidithiobacillus ferrivorans SS3 11044261 YP_004783977.1 CDS Acife_1509 NC_015942.1 1514130 1515923 D TIGRFAM: DNA mismatch repair protein, N-terminal; HAMAP: DNA mismatch repair protein mutL; KEGG: afr:AFE_1927 mismatch repair protein MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATP-binding region, ATPase-like; DNA mismatch repair protein mutL 1514130..1515923 Acidithiobacillus ferrivorans SS3 11042519 YP_004783978.1 CDS Acife_1510 NC_015942.1 1515920 1516846 D TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase; KEGG: afr:AFE_1928 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA dimethylallyltransferase 1515920..1516846 Acidithiobacillus ferrivorans SS3 11042520 YP_004783979.1 CDS Acife_1511 NC_015942.1 1516926 1517396 D HAMAP: Nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase, core; KEGG: afr:AFE_1929 nucleoside diphosphate kinase; SMART: Nucleoside diphosphate kinase, core; nucleoside diphosphate kinase 1516926..1517396 Acidithiobacillus ferrivorans SS3 11042521 YP_004783980.1 CDS Acife_1512 NC_015942.1 1517397 1518488 D TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; KEGG: afe:Lferr_1602 radical SAM enzyme, Cfr family; PFAM: Radical SAM; ribosomal RNA large subunit methyltransferase N 1517397..1518488 Acidithiobacillus ferrivorans SS3 11042522 YP_004783981.1 CDS Acife_1513 NC_015942.1 1518485 1519330 D KEGG: afe:Lferr_1603 type IV pilus biogenesis/stability protein PilW; TIGRFAM: Pilus biogenesis/stability type IV, PilW; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; type IV pilus biogenesis/stability protein PilW 1518485..1519330 Acidithiobacillus ferrivorans SS3 11042523 YP_004783982.1 CDS Acife_1514 NC_015942.1 1519343 1520323 D SMART: Helix-turn-helix type 3; KEGG: afe:Lferr_1604 XRE family transcriptional regulator; XRE family transcriptional regulator 1519343..1520323 Acidithiobacillus ferrivorans SS3 11042524 YP_004783983.1 CDS Acife_1515 NC_015942.1 1520313 1521413 D TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; KEGG: afr:AFE_1933 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1520313..1521413 Acidithiobacillus ferrivorans SS3 11042525 YP_004783984.1 CDS Acife_1516 NC_015942.1 1521446 1522765 D TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: afr:AFE_1934 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; histidyl-tRNA synthetase 1521446..1522765 Acidithiobacillus ferrivorans SS3 11044262 YP_004783985.1 CDS Acife_1517 NC_015942.1 1522762 1523373 D KEGG: afr:AFE_1935 hypothetical protein; hypothetical protein 1522762..1523373 Acidithiobacillus ferrivorans SS3 11042526 YP_004783986.1 CDS Acife_1518 NC_015942.1 1523370 1524557 D TIGRFAM: Outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat; KEGG: afr:AFE_1936 PQQ enzyme repeat domain protein; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; outer membrane assembly lipoprotein YfgL 1523370..1524557 Acidithiobacillus ferrivorans SS3 11042527 YP_004783987.1 CDS Acife_1519 NC_015942.1 1524568 1525917 D TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; HAMAP: GTP-binding, EngA; KEGG: afr:AFE_1937 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related; GTP-binding protein engA 1524568..1525917 Acidithiobacillus ferrivorans SS3 11042528 YP_004783988.1 CDS Acife_1520 NC_015942.1 1525918 1526334 D KEGG: afr:AFE_1938 hypothetical protein; hypothetical protein 1525918..1526334 Acidithiobacillus ferrivorans SS3 11042529 YP_004783989.1 CDS Acife_1521 NC_015942.1 1526306 1526809 D KEGG: afr:AFE_2314 phosphohistidine phosphatase SixA; TIGRFAM: Phosphohistidine phosphatase SixA, subgroup; PFAM: Phosphoglycerate mutase; phosphohistidine phosphatase SixA 1526306..1526809 Acidithiobacillus ferrivorans SS3 11042530 YP_004783990.1 CDS Acife_1522 NC_015942.1 1526882 1527253 D KEGG: afr:AFE_2508 hypothetical protein; hypothetical protein 1526882..1527253 Acidithiobacillus ferrivorans SS3 11044263 YP_004783991.1 CDS Acife_1523 NC_015942.1 1527520 1528608 D KEGG: afe:Lferr_1611 phosphate ABC transporter periplasmic phosphate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1; phosphate ABC transporter substrate-binding protein 1527520..1528608 Acidithiobacillus ferrivorans SS3 11042531 YP_004783992.1 CDS Acife_1524 NC_015942.1 1528731 1529687 D KEGG: afr:AFE_1940 phosphate ABC transporter, permease protein PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 1528731..1529687 Acidithiobacillus ferrivorans SS3 11042532 YP_004783993.1 CDS Acife_1525 NC_015942.1 1529687 1530598 D KEGG: afr:AFE_1941 phosphate ABC transporter, permease protein, putative; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 1529687..1530598 Acidithiobacillus ferrivorans SS3 11044264 YP_004783994.1 CDS Acife_1526 NC_015942.1 1530620 1531600 R PFAM: Haemerythrin/HHE cation-binding motif; KEGG: afr:AFE_1942 hypothetical protein; Hemerythrin HHE cation binding domain-containing protein complement(1530620..1531600) Acidithiobacillus ferrivorans SS3 11042533 YP_004783995.1 CDS Acife_1527 NC_015942.1 1532276 1532992 R KEGG: afr:AFE_2429 [Ni/Fe] hydrogenase, b-type cytochrome subunit, putative; (Ni/Fe) hydrogenase, b-type cytochrome subunit complement(1532276..1532992) Acidithiobacillus ferrivorans SS3 11042534 YP_004783996.1 CDS Acife_1528 NC_015942.1 1533246 1534376 D PFAM: Carbohydrate-selective porin OprB; KEGG: afr:AFE_2250 carbohydrate-selective porin, OprB family; carbohydrate-selective porin OprB 1533246..1534376 Acidithiobacillus ferrivorans SS3 11042535 YP_004783997.1 CDS Acife_1529 NC_015942.1 1534606 1535298 D PFAM: Major intrinsic protein; KEGG: afr:AFE_0154 MIP family channel protein; major intrinsic protein 1534606..1535298 Acidithiobacillus ferrivorans SS3 11044265 YP_004783998.1 CDS Acife_1530 NC_015942.1 1535416 1537179 R TIGRFAM: ATPase, anion-transporting; PFAM: ATPase, anion-transporting; KEGG: psa:PST_0237 arsenical pump-driving ATPase; SMART: ATPase, AAA+ type, core; arsenite-activated ATPase ArsA complement(1535416..1537179) Acidithiobacillus ferrivorans SS3 11042536 YP_004783999.1 CDS Acife_1531 NC_015942.1 1537220 1537582 R PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: psa:PST_0238 arsenic operon regulator; Arsenical resistance operon trans-acting repressor ArsD complement(1537220..1537582) Acidithiobacillus ferrivorans SS3 11042537 YP_004784000.1 CDS Acife_1532 NC_015942.1 1537622 1538107 R KEGG: afr:AFE_2860 arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; protein tyrosine phosphatase complement(1537622..1538107) Acidithiobacillus ferrivorans SS3 11044266 YP_004784001.1 CDS Acife_1533 NC_015942.1 1538107 1538469 R SMART: HTH transcriptional regulator, ArsR; KEGG: afr:AFE_2859 transcriptional regulator, ArsR; regulatory protein ArsR complement(1538107..1538469) Acidithiobacillus ferrivorans SS3 11042538 YP_004784002.1 CDS Acife_1534 NC_015942.1 1538611 1539546 R KEGG: tin:Tint_1169 diguanylate cyclase/phosphodiesterase with GAF sensor; hypothetical protein complement(1538611..1539546) Acidithiobacillus ferrivorans SS3 11042539 YP_004784003.1 CDS Acife_1535 NC_015942.1 1539909 1540322 R PFAM: PilT protein, N-terminal; KEGG: gob:Gobs_1669 PilT protein domain-containing protein; PilT protein domain-containing protein complement(1539909..1540322) Acidithiobacillus ferrivorans SS3 11044267 YP_004784004.1 CDS Acife_1536 NC_015942.1 1540309 1540524 R PFAM: Protein of unknown function DUF2191; KEGG: tmt:Tmath_2080 protein of unknown function DUF2191; hypothetical protein complement(1540309..1540524) Acidithiobacillus ferrivorans SS3 11042540 YP_004784005.1 CDS Acife_1537 NC_015942.1 1540549 1540647 R hypothetical protein complement(1540549..1540647) Acidithiobacillus ferrivorans SS3 11044268 YP_004784006.1 CDS Acife_1538 NC_015942.1 1540700 1540927 R TIGRFAM: Prevent-host-death protein; KEGG: app:CAP2UW1_3555 prevent-host-death family protein; prevent-host-death family protein complement(1540700..1540927) Acidithiobacillus ferrivorans SS3 11042541 YP_004784007.1 CDS Acife_1539 NC_015942.1 1541083 1541877 R PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: plu:plu0253 hypothetical protein; filamentation induced by cAMP protein Fic complement(1541083..1541877) Acidithiobacillus ferrivorans SS3 11042542 YP_004784008.1 CDS Acife_1541 NC_015942.1 1542364 1542690 R PFAM: PemK-like protein; KEGG: rpf:Rpic12D_5124 transcriptional modulator of MazE/toxin, MazF; transcriptional modulator of MazE/toxin, MazF complement(1542364..1542690) Acidithiobacillus ferrivorans SS3 11042544 YP_004784009.1 CDS Acife_1542 NC_015942.1 1542687 1542944 R PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: rpf:Rpic12D_5125 transcriptional regulator/antitoxin, MazE; SpoVT/AbrB domain-containing protein complement(1542687..1542944) Acidithiobacillus ferrivorans SS3 11042545 YP_004784010.1 CDS Acife_1543 NC_015942.1 1543165 1543437 R KEGG: hna:Hneap_1625 addiction module toxin, RelE/StbE family; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system; RelE/StbE family addiction module toxin complement(1543165..1543437) Acidithiobacillus ferrivorans SS3 11042546 YP_004784011.1 CDS Acife_1544 NC_015942.1 1543421 1543645 R KEGG: hna:Hneap_1626 CopG domain protein DNA-binding domain protein; CopG domain-containing protein DNA-binding domain-containing protein complement(1543421..1543645) Acidithiobacillus ferrivorans SS3 11044269 YP_004784012.1 CDS Acife_1545 NC_015942.1 1544234 1544524 R PFAM: Protein of unknown function DUF1778; KEGG: azo:azo2026 hypothetical protein; hypothetical protein complement(1544234..1544524) Acidithiobacillus ferrivorans SS3 11042547 YP_004784013.1 CDS Acife_1546 NC_015942.1 1544652 1544930 R PFAM: CopG-like DNA-binding; KEGG: xfa:XF2075 hypothetical protein; CopG family transcriptional regulator complement(1544652..1544930) Acidithiobacillus ferrivorans SS3 11042548 YP_004784014.1 CDS Acife_1547 NC_015942.1 1544942 1545160 R PFAM: Protein of unknown function DUF2283; KEGG: tbd:Tbd_0450 hypothetical protein; hypothetical protein complement(1544942..1545160) Acidithiobacillus ferrivorans SS3 11044270 YP_004784015.1 CDS Acife_1548 NC_015942.1 1545157 1545402 R KEGG: tau:Tola_1305 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF1778; hypothetical protein complement(1545157..1545402) Acidithiobacillus ferrivorans SS3 11042549 YP_004784016.1 CDS Acife_1549 NC_015942.1 1545636 1549205 R KEGG: llo:LLO_2580 type 4 fimbrial biogenesis protein PilY1; type 4 fimbrial biogenesis protein PilY1 complement(1545636..1549205) Acidithiobacillus ferrivorans SS3 11042550 YP_004784017.1 CDS Acife_1550 NC_015942.1 1549220 1549816 R hypothetical protein complement(1549220..1549816) Acidithiobacillus ferrivorans SS3 11044271 YP_004784018.1 CDS Acife_1551 NC_015942.1 1549828 1551009 R KEGG: afr:AFE_0969 type IV pilin, putative; hypothetical protein complement(1549828..1551009) Acidithiobacillus ferrivorans SS3 11042551 YP_004784019.1 CDS Acife_1552 NC_015942.1 1550978 1551454 R TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: tgr:Tgr7_3228 Tfp pilus assembly protein PilV-like protein; type IV pilus modification protein PilV complement(1550978..1551454) Acidithiobacillus ferrivorans SS3 11042552 YP_004784020.1 CDS Acife_1553 NC_015942.1 1551444 1552703 R PFAM: Type II secretion system F domain; KEGG: afr:AFE_0972 type IV pilus biogenesis protein PilC; type II secretion system F domain-containing protein complement(1551444..1552703) Acidithiobacillus ferrivorans SS3 11042553 YP_004784021.1 CDS Acife_1554 NC_015942.1 1552783 1552995 R KEGG: afr:AFE_1714 hypothetical protein; hypothetical protein complement(1552783..1552995) Acidithiobacillus ferrivorans SS3 11044272 YP_004784022.1 CDS Acife_1555 NC_015942.1 1553016 1553507 R hypothetical protein complement(1553016..1553507) Acidithiobacillus ferrivorans SS3 11042554 YP_004784023.1 CDS Acife_1556 NC_015942.1 1553529 1553789 R hypothetical protein complement(1553529..1553789) Acidithiobacillus ferrivorans SS3 11042555 YP_004784024.1 CDS Acife_1557 NC_015942.1 1554008 1554505 R KEGG: afr:AFE_0416 pilin, putative; pilin complement(1554008..1554505) Acidithiobacillus ferrivorans SS3 11044273 YP_004784025.1 CDS Acife_1558 NC_015942.1 1554885 1555379 D PFAM: Sel1-like; KEGG: afr:AFE_0409 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 1554885..1555379 Acidithiobacillus ferrivorans SS3 11042556 YP_004784026.1 CDS Acife_1559 NC_015942.1 1555374 1555724 R PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: abo:ABO_2397 dioxygenase ferredoxin reductase component; Rieske (2Fe-2S) iron-sulfur domain-containing protein complement(1555374..1555724) Acidithiobacillus ferrivorans SS3 11042557 YP_004784027.1 CDS Acife_1560 NC_015942.1 1555762 1556493 R KEGG: afe:Lferr_1541 hypothetical protein; hypothetical protein complement(1555762..1556493) Acidithiobacillus ferrivorans SS3 11042558 YP_004784028.1 CDS Acife_1561 NC_015942.1 1556804 1557013 R KEGG: npu:Npun_F6102 hypothetical protein; hypothetical protein complement(1556804..1557013) Acidithiobacillus ferrivorans SS3 11042559 YP_004784029.1 CDS Acife_1563 NC_015942.1 1557214 1558428 D PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: cph:Cpha266_2270 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1557214..1558428 Acidithiobacillus ferrivorans SS3 11042560 YP_004784030.1 CDS Acife_1565 NC_015942.1 1558781 1559020 D KEGG: aav:Aave_2943 hypothetical protein; hypothetical protein 1558781..1559020 Acidithiobacillus ferrivorans SS3 11042562 YP_004784031.1 CDS Acife_1566 NC_015942.1 1559020 1559439 D TIGRFAM: Protein of unknown function DUF132; PFAM: PilT protein, N-terminal; KEGG: aav:Aave_2942 PilT domain-containing protein; SMART: Nucleotide binding protein, PINc; hypothetical protein 1559020..1559439 Acidithiobacillus ferrivorans SS3 11042563 YP_004784032.1 CDS Acife_1568 NC_015942.1 1559605 1560054 R KEGG: rpf:Rpic12D_0692 hypothetical protein; hypothetical protein complement(1559605..1560054) Acidithiobacillus ferrivorans SS3 11042565 YP_004784033.1 CDS Acife_1569 NC_015942.1 1560054 1560515 R KEGG: bxe:Bxe_A1174 AbrB family transcriptional regulator; TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; AbrB family transcriptional regulator complement(1560054..1560515) Acidithiobacillus ferrivorans SS3 11044275 YP_004784034.1 CDS Acife_1570 NC_015942.1 1560806 1561057 D PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: app:CAP2UW1_4523 transcriptional regulator, AbrB family; SpoVT/AbrB domain-containing protein 1560806..1561057 Acidithiobacillus ferrivorans SS3 11042566 YP_004784035.1 CDS Acife_1571 NC_015942.1 1561054 1561449 D KEGG: xcb:XC_2599 hypothetical protein; hypothetical protein 1561054..1561449 Acidithiobacillus ferrivorans SS3 11042567 YP_004784036.1 CDS Acife_1572 NC_015942.1 1561975 1563864 D HAMAP: Chaperone protein htpG; PFAM: Heat shock protein Hsp90, C-terminal; ATP-binding region, ATPase-like; KEGG: afr:AFE_3158 heat shock protein HtpG; SMART: ATP-binding region, ATPase-like; chaperone protein htpG 1561975..1563864 Acidithiobacillus ferrivorans SS3 11044276 YP_004784037.1 CDS Acife_1574 NC_015942.1 1564446 1564805 R TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; KEGG: afr:AFE_1754 virulence-associated protein, putative; SMART: Helix-turn-helix type 3; XRE family transcriptional regulator complement(1564446..1564805) Acidithiobacillus ferrivorans SS3 11042569 YP_004784038.1 CDS Acife_1575 NC_015942.1 1564822 1565103 R PFAM: Plasmid maintenance system killer; KEGG: neu:NE1109 hypothetical protein; plasmid maintenance system killer complement(1564822..1565103) Acidithiobacillus ferrivorans SS3 11044277 YP_004784039.1 CDS Acife_1576 NC_015942.1 1565176 1565430 R hypothetical protein complement(1565176..1565430) Acidithiobacillus ferrivorans SS3 11042570 YP_004784040.1 CDS Acife_1577 NC_015942.1 1565646 1566518 R PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: acl:ACL_0438 Fic-domain-containing protein; filamentation induced by cAMP protein Fic complement(1565646..1566518) Acidithiobacillus ferrivorans SS3 11042571 YP_004784041.1 CDS Acife_1578 NC_015942.1 1566883 1568031 R PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: vpe:Varpa_5326 filamentation induced by camp protein fic; filamentation induced by cAMP protein Fic complement(1566883..1568031) Acidithiobacillus ferrivorans SS3 11042572 YP_004784042.1 CDS Acife_1579 NC_015942.1 1568562 1572560 D TIGRFAM: Diguanylate cyclase, predicted; PAS; Twin-arginine translocation pathway, signal sequence; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; PAS fold-4; KEGG: afe:Lferr_2664 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 1568562..1572560 Acidithiobacillus ferrivorans SS3 11042573 YP_004784043.1 CDS Acife_1581 NC_015942.1 1573027 1573200 R PFAM: Proto-chlorophyllide reductase 57kDa subunit; KEGG: afr:AFE_0095 hypothetical protein; proto-chlorophyllide reductase 57 kD subunit complement(1573027..1573200) Acidithiobacillus ferrivorans SS3 11042575 YP_004784044.1 CDS Acife_1583 NC_015942.1 1574032 1574985 D PFAM: Type IV pilus assembly PilZ; type IV pilus assembly PilZ 1574032..1574985 Acidithiobacillus ferrivorans SS3 11042576 YP_004784045.1 CDS Acife_1584 NC_015942.1 1574961 1575158 D hypothetical protein 1574961..1575158 Acidithiobacillus ferrivorans SS3 11042577 YP_004784046.1 CDS Acife_1585 NC_015942.1 1575301 1576416 D KEGG: tsa:AciPR4_1393 cellulose synthase operon protein YhjQ; hypothetical protein 1575301..1576416 Acidithiobacillus ferrivorans SS3 11042578 YP_004784047.1 CDS Acife_1586 NC_015942.1 1576484 1580857 D KEGG: aca:ACP_0075 cellulose synthase I; TIGRFAM: Cellulose synthase catalytic subunit (UDP-forming); PFAM: Cellulose synthase BcsB, bacterial; Glycosyl transferase, family 2; Type IV pilus assembly PilZ; cellulose synthase catalytic subunit 1576484..1580857 Acidithiobacillus ferrivorans SS3 11042579 YP_004784048.1 CDS Acife_1587 NC_015942.1 1580854 1582026 D PFAM: Glycoside hydrolase, family 8; KEGG: aca:ACP_0076 endo-1,4-D-glucanase; glycoside hydrolase family protein 1580854..1582026 Acidithiobacillus ferrivorans SS3 11042580 YP_004784049.1 CDS Acife_1588 NC_015942.1 1582005 1584386 D PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: tsa:AciPR4_1397 cellulose synthase operon C domain-containing protein; hypothetical protein 1582005..1584386 Acidithiobacillus ferrivorans SS3 11042581 YP_004784050.1 CDS Acife_1589 NC_015942.1 1584389 1586017 D PFAM: Cellulose synthase operon C, C-terminal; KEGG: vpe:Varpa_3211 cellulose synthase operon c domain protein; cellulose synthase operon C domain-containing protein 1584389..1586017 Acidithiobacillus ferrivorans SS3 11042582 YP_004784051.1 CDS Acife_1590 NC_015942.1 1586395 1587270 D PFAM: Crotonase, core; KEGG: tgr:Tgr7_0083 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 1586395..1587270 Acidithiobacillus ferrivorans SS3 11042583 YP_004784052.1 CDS Acife_1591 NC_015942.1 1587302 1589878 R KEGG: tgr:Tgr7_0082 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; multi-sensor hybrid histidine kinase complement(1587302..1589878) Acidithiobacillus ferrivorans SS3 11044279 YP_004784053.1 CDS Acife_1592 NC_015942.1 1589920 1591089 R KEGG: tbd:Tbd_2670 metal dependent phosphohydrolase, HD region; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region; response regulator receiver modulated metal dependent phosphohydrolase complement(1589920..1591089) Acidithiobacillus ferrivorans SS3 11042584 YP_004784054.1 CDS Acife_1593 NC_015942.1 1591372 1591536 R hypothetical protein complement(1591372..1591536) Acidithiobacillus ferrivorans SS3 11044280 YP_004784055.1 CDS Acife_1594 NC_015942.1 1591836 1594124 D KEGG: amc:MADE_00787 cellulose synthase catalytic subunit; TIGRFAM: Cellulose synthase catalytic subunit (UDP-forming); PFAM: Glycosyl transferase, family 2; Type IV pilus assembly PilZ; cellulose synthase catalytic subunit 1591836..1594124 Acidithiobacillus ferrivorans SS3 11042585 YP_004784056.1 CDS Acife_1595 NC_015942.1 1594146 1596227 D PFAM: Cellulose synthase BcsB, bacterial; KEGG: amc:MADE_00788 CelB protein; cellulose synthase BcsB 1594146..1596227 Acidithiobacillus ferrivorans SS3 11042586 YP_004784057.1 CDS Acife_1596 NC_015942.1 1596224 1598410 D KEGG: met:M446_0104 hypothetical protein; hypothetical protein 1596224..1598410 Acidithiobacillus ferrivorans SS3 11044281 YP_004784058.1 CDS Acife_1598 NC_015942.1 1599098 1600351 D PFAM: Glycoside hydrolase, family 8; KEGG: aca:ACP_0076 endo-1,4-D-glucanase; glycoside hydrolase family protein 1599098..1600351 Acidithiobacillus ferrivorans SS3 11042588 YP_004784059.1 CDS Acife_1599 NC_015942.1 1600394 1601698 D TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: afr:AFE_1712 diguanylate cyclase, putative; SMART: Diguanylate cyclase, predicted; diguanylate cyclase 1600394..1601698 Acidithiobacillus ferrivorans SS3 11044282 YP_004784060.1 CDS Acife_1601 NC_015942.1 1602480 1603253 D PFAM: Protein of unknown function DUF481; KEGG: afr:AFE_2054 hypothetical protein; hypothetical protein 1602480..1603253 Acidithiobacillus ferrivorans SS3 11044283 YP_004784061.1 CDS Acife_1602 NC_015942.1 1603298 1603723 R TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, QueF; HAMAP: Nitrile oxidoreductase, NADPH-dependent, QueF; KEGG: afr:AFE_0752 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; NADPH-dependent 7-cyano-7-deazaguanine reductase complement(1603298..1603723) Acidithiobacillus ferrivorans SS3 11042591 YP_004784062.1 CDS Acife_1603 NC_015942.1 1603785 1607237 D KEGG: afe:Lferr_0900 chromosome segregation protein SMC; TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC protein, N-terminal; chromosome segregation protein SMC 1603785..1607237 Acidithiobacillus ferrivorans SS3 11042592 YP_004784063.1 CDS Acife_1604 NC_015942.1 1607252 1607947 R TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: afr:AFE_0756 HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase complement(1607252..1607947) Acidithiobacillus ferrivorans SS3 11044284 YP_004784064.1 CDS Acife_1605 NC_015942.1 1608088 1610103 D SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; TIGRFAM: NAD-dependent DNA ligase; KEGG: afr:AFE_0757 DNA ligase, NAD-dependent; HAMAP: DNA ligase; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT; DNA ligase 1608088..1610103 Acidithiobacillus ferrivorans SS3 11042593 YP_004784065.1 CDS Acife_1606 NC_015942.1 1610106 1610621 D TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; HAMAP: ATPase, F1 complex, delta/epsilon subunit; KEGG: afr:AFE_0758 ATP synthase F1, epsilon subunit, putative; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; ATP synthase subunit epsilon 1610106..1610621 Acidithiobacillus ferrivorans SS3 11042594 YP_004784066.1 CDS Acife_1607 NC_015942.1 1610637 1611002 R PFAM: Protein of unknown function DUF202; KEGG: cno:NT01CX_0294 hypothetical protein; hypothetical protein complement(1610637..1611002) Acidithiobacillus ferrivorans SS3 11042595 YP_004784067.1 CDS Acife_1608 NC_015942.1 1610999 1611316 R KEGG: hypothetical protein; hypothetical protein complement(1610999..1611316) Acidithiobacillus ferrivorans SS3 11042596 YP_004784068.1 CDS Acife_1609 NC_015942.1 1611450 1611935 R KEGG: afr:AFE_1467 transcriptional regulator, Fur family; Fur family transcriptional regulator complement(1611450..1611935) Acidithiobacillus ferrivorans SS3 11042597 YP_004784069.1 CDS Acife_1610 NC_015942.1 1612053 1612532 D PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: afr:AFE_1468 antioxidant, AhpC/Tsa family; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 1612053..1612532 Acidithiobacillus ferrivorans SS3 11042598 YP_004784070.1 CDS Acife_1611 NC_015942.1 1612529 1613938 D KEGG: afr:AFE_1469 PhoH family protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc; PhoH family protein 1612529..1613938 Acidithiobacillus ferrivorans SS3 11044285 YP_004784071.1 CDS Acife_1612 NC_015942.1 1614002 1615915 D TIGRFAM: Arginine decarboxylase; HAMAP: Biosynthetic arginine decarboxylase; KEGG: afr:AFE_1471 arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; Biosynthetic arginine decarboxylase 1614002..1615915 Acidithiobacillus ferrivorans SS3 11042599 YP_004784072.1 CDS Acife_1613 NC_015942.1 1615880 1616308 R KEGG: afr:AFE_1470 hypothetical protein; hypothetical protein complement(1615880..1616308) Acidithiobacillus ferrivorans SS3 11044286 YP_004784073.1 CDS Acife_1614 NC_015942.1 1616344 1617027 R PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: afr:AFE_1472 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase complement(1616344..1617027) Acidithiobacillus ferrivorans SS3 11042600 YP_004784074.1 CDS Acife_1615 NC_015942.1 1617024 1617440 R KEGG: afr:AFE_1475 hypothetical protein; hypothetical protein complement(1617024..1617440) Acidithiobacillus ferrivorans SS3 11042601 YP_004784075.1 CDS Acife_1616 NC_015942.1 1617449 1617943 R KEGG: afr:AFE_1476 hypothetical protein; hypothetical protein complement(1617449..1617943) Acidithiobacillus ferrivorans SS3 11044287 YP_004784076.1 CDS Acife_1617 NC_015942.1 1617933 1618268 R PFAM: Sucraseferredoxin-like; KEGG: azo:azo3368 ferredoxin 2Fe-2S protein; Sucraseferredoxin family protein complement(1617933..1618268) Acidithiobacillus ferrivorans SS3 11042602 YP_004784077.1 CDS Acife_1618 NC_015942.1 1618282 1618569 R KEGG: afr:AFE_1477 ferredoxin-like protein; ferredoxin-like protein complement(1618282..1618569) Acidithiobacillus ferrivorans SS3 11044288 YP_004784078.1 CDS Acife_1619 NC_015942.1 1618566 1619864 R PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: afr:AFE_1478 FixC protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein complement(1618566..1619864) Acidithiobacillus ferrivorans SS3 11042603 YP_004784079.1 CDS Acife_1620 NC_015942.1 1619881 1620975 R PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; KEGG: afr:AFE_1479 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha complement(1619881..1620975) Acidithiobacillus ferrivorans SS3 11042604 YP_004784080.1 CDS Acife_1621 NC_015942.1 1620995 1621837 R PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; KEGG: afr:AFE_1480 electron transfer flavoprotein, beta subunit; electron transfer flavoprotein alpha/beta-subunit complement(1620995..1621837) Acidithiobacillus ferrivorans SS3 11042605 YP_004784081.1 CDS Acife_1622 NC_015942.1 1622028 1623626 R PFAM: Amine oxidase; KEGG: mca:MCA2837 amine oxidase; amine oxidase complement(1622028..1623626) Acidithiobacillus ferrivorans SS3 11044289 YP_004784082.1 CDS Acife_1623 NC_015942.1 1623774 1623974 D hypothetical protein 1623774..1623974 Acidithiobacillus ferrivorans SS3 11042606 YP_004784083.1 CDS Acife_1624 NC_015942.1 1623941 1624864 R PFAM: Bacterial extracellular solute-binding, family 1; KEGG: afr:AFE_1498 ABC transporter, periplasmic substrate-binding protein, putative; family 1 extracellular solute-binding protein complement(1623941..1624864) Acidithiobacillus ferrivorans SS3 11042607 YP_004784084.1 CDS Acife_1625 NC_015942.1 1625073 1626770 D KEGG: afe:Lferr_1217 AAA ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; AAA ATPase central domain-containing protein 1625073..1626770 Acidithiobacillus ferrivorans SS3 11042608 YP_004784085.1 CDS Acife_1626 NC_015942.1 1626814 1627128 D KEGG: afr:AFE_1500 hypothetical protein; hypothetical protein 1626814..1627128 Acidithiobacillus ferrivorans SS3 11042609 YP_004784086.1 CDS Acife_1627 NC_015942.1 1627166 1627495 D PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: mca:MCA0225 Rieske 2Fe-2S family protein; Rieske (2Fe-2S) iron-sulfur domain-containing protein 1627166..1627495 Acidithiobacillus ferrivorans SS3 11044290 YP_004784087.1 CDS Acife_1628 NC_015942.1 1627522 1627755 R KEGG: azc:AZC_3432 hypothetical protein; hypothetical protein complement(1627522..1627755) Acidithiobacillus ferrivorans SS3 11042610 YP_004784088.1 CDS Acife_1629 NC_015942.1 1627815 1628045 R KEGG: afr:AFE_1501 hypothetical protein; TIGRFAM: Regulatory protein, FmdB, putative; PFAM: Regulatory protein, FmdB, putative; FmdB family regulatory protein complement(1627815..1628045) Acidithiobacillus ferrivorans SS3 11042611 YP_004784089.1 CDS Acife_1630 NC_015942.1 1628114 1628896 R KEGG: afr:AFE_1502 ankyrin repeat protein/rhodanese-like domain protein; PFAM: Rhodanese-like; Ankyrin repeat; SMART: Rhodanese-like; Ankyrin repeat; rhodanese-like protein complement(1628114..1628896) Acidithiobacillus ferrivorans SS3 11042612 YP_004784090.1 CDS Acife_1631 NC_015942.1 1628868 1630508 R PFAM: Nitroreductase-like; KEGG: afr:AFE_1503 nitroreductase, putative; nitroreductase complement(1628868..1630508) Acidithiobacillus ferrivorans SS3 11042613 YP_004784091.1 CDS Acife_1632 NC_015942.1 1630573 1630905 R KEGG: afr:AFE_1504 NifW protein, putative; HAMAP: Nitrogenase-stabilizing/protective protein nifW; PFAM: Nitrogen fixation protein NifW; nitrogenase-stabilizing/protective protein nifW complement(1630573..1630905) Acidithiobacillus ferrivorans SS3 11044291 YP_004784092.1 CDS Acife_1633 NC_015942.1 1630910 1631719 R KEGG: afr:AFE_1505 serine O-acetyltransferase; TIGRFAM: Serine O-acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat; serine O-acetyltransferase complement(1630910..1631719) Acidithiobacillus ferrivorans SS3 11042614 YP_004784093.1 CDS Acife_1634 NC_015942.1 1631735 1632895 R KEGG: afr:AFE_1506 homocitrate synthase; TIGRFAM: Homocitrate synthase NifV-type; PFAM: Pyruvate carboxyltransferase; homocitrate synthase complement(1631735..1632895) Acidithiobacillus ferrivorans SS3 11042615 YP_004784094.1 CDS Acife_1635 NC_015942.1 1632888 1634096 R KEGG: afr:AFE_1507 cysteine desulfurase; TIGRFAM: Cysteine desulfurase, NifS, bacterial/archaeal; PFAM: Aminotransferase, class V/Cysteine desulfurase; cysteine desulfurase NifS complement(1632888..1634096) Acidithiobacillus ferrivorans SS3 11042616 YP_004784095.1 CDS Acife_1636 NC_015942.1 1634099 1634974 R KEGG: afr:AFE_1508 nitrogen fixation protein NifU; TIGRFAM: NIF system FeS cluster assembly, NifU; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; BFD-like [2Fe-2S]-binding region; NIF system FeS cluster assembly, NifU, C-terminal; Fe-S cluster assembly protein NifU complement(1634099..1634974) Acidithiobacillus ferrivorans SS3 11042617 YP_004784096.1 CDS Acife_1637 NC_015942.1 1634979 1635347 R KEGG: afr:AFE_1509 iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis; iron-sulfur cluster assembly accessory protein complement(1634979..1635347) Acidithiobacillus ferrivorans SS3 11042618 YP_004784097.1 CDS Acife_1638 NC_015942.1 1635605 1636198 R KEGG: afr:AFE_1510 hypothetical protein; hypothetical protein complement(1635605..1636198) Acidithiobacillus ferrivorans SS3 11042619 YP_004784098.1 CDS Acife_1639 NC_015942.1 1636229 1636882 R PFAM: NifQ; KEGG: afr:AFE_1511 nitrogen fixation protein NifQ; NifQ family protein complement(1636229..1636882) Acidithiobacillus ferrivorans SS3 11044292 YP_004784099.1 CDS Acife_1640 NC_015942.1 1636913 1637221 R KEGG: afr:AFE_1512 ferredoxin; TIGRFAM: Ferredoxin III 4[4Fe-4S], nif-specific; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; ferredoxin III, nif-specific complement(1636913..1637221) Acidithiobacillus ferrivorans SS3 11042620 YP_004784100.1 CDS Acife_1641 NC_015942.1 1637226 1637489 R PFAM: Uncharacterised protein family UPF0437; KEGG: afr:AFE_1513 hypothetical protein; hypothetical protein complement(1637226..1637489) Acidithiobacillus ferrivorans SS3 11042621 YP_004784101.1 CDS Acife_1642 NC_015942.1 1637547 1638011 R KEGG: afr:AFE_1514 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0460; PFAM: Uncharacterised protein family UPF0460; nitrogen fixation protein complement(1637547..1638011) Acidithiobacillus ferrivorans SS3 11042622 YP_004784102.1 CDS Acife_1643 NC_015942.1 1638004 1638420 R KEGG: afr:AFE_1515 nitrogen fixation protein NifX; TIGRFAM: Nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; nitrogen fixation protein NifX complement(1638004..1638420) Acidithiobacillus ferrivorans SS3 11042623 YP_004784103.1 CDS Acife_1644 NC_015942.1 1638473 1639834 R KEGG: afr:AFE_1516 nitrogenase molybdenum-cofactor biosynthesis protein NifN; TIGRFAM: Nitrogenase molybdenum-iron cofactor biosynthesis protein; PFAM: Nitrogenase/oxidoreductase, component 1; nitrogenase molybdenum-iron cofactor biosynthesis protein NifN complement(1638473..1639834) Acidithiobacillus ferrivorans SS3 11044293 YP_004784104.1 CDS Acife_1645 NC_015942.1 1639831 1641222 R KEGG: afr:AFE_1517 nitrogenase molybdenum-cofactor biosynthesis protein NifE; TIGRFAM: Nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: Nitrogenase/oxidoreductase, component 1; nitrogenase MoFe cofactor biosynthesis protein NifE complement(1639831..1641222) Acidithiobacillus ferrivorans SS3 11042624 YP_004784105.1 CDS Acife_1646 NC_015942.1 1641241 1641585 R PFAM: Ferredoxin; KEGG: afr:AFE_1518 ferredoxin, putative; ferredoxin complement(1641241..1641585) Acidithiobacillus ferrivorans SS3 11042625 YP_004784106.1 CDS Acife_1647 NC_015942.1 1641610 1641954 R PFAM: Ferredoxin; KEGG: afr:AFE_1519 ferredoxin; ferredoxin complement(1641610..1641954) Acidithiobacillus ferrivorans SS3 11042626 YP_004784107.1 CDS Acife_1648 NC_015942.1 1642022 1643581 R KEGG: afr:AFE_1520 nitrogenase molybdenum-iron protein, beta subunit; TIGRFAM: Nitrogenase molybdenum-iron protein beta chain; PFAM: Nitrogenase/oxidoreductase, component 1; nitrogenase molybdenum-iron protein beta chain complement(1642022..1643581) Acidithiobacillus ferrivorans SS3 11042627 YP_004784108.1 CDS Acife_1649 NC_015942.1 1643660 1645135 R KEGG: afr:AFE_1521 nitrogenase molybdenum-iron protein, alpha subunit; TIGRFAM: Nitrogenase molybdenum-iron protein alpha chain; Nitrogenase component 1, alpha chain; PFAM: Nitrogenase/oxidoreductase, component 1; nitrogenase molybdenum-iron protein alpha chain complement(1643660..1645135) Acidithiobacillus ferrivorans SS3 11044294 YP_004784109.1 CDS Acife_1650 NC_015942.1 1645200 1646087 R TIGRFAM: Nitrogenase iron protein NifH; HAMAP: Nitrogenase iron protein NifH; KEGG: afr:AFE_1522 nitrogenase reductase; PFAM: Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL; nitrogenase iron protein complement(1645200..1646087) Acidithiobacillus ferrivorans SS3 11042628 YP_004784110.1 CDS Acife_1651 NC_015942.1 1646548 1646934 D KEGG: afr:AFE_1523 response regulator; response regulator 1646548..1646934 Acidithiobacillus ferrivorans SS3 11042629 YP_004784111.1 CDS Acife_1652 NC_015942.1 1646952 1647779 D PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: afr:AFE_1524 NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase; Dinitrogenase reductase ADP-ribosyltransferase 1646952..1647779 Acidithiobacillus ferrivorans SS3 11044295 YP_004784112.1 CDS Acife_1653 NC_015942.1 1647789 1649177 D KEGG: afr:AFE_1525 ADP-ribosyl-[dinitrogen reductase] hydrolase; TIGRFAM: ADP-ribosyl-dinitrogen reductase hydrolase; Nitrogenase-associated protein; PFAM: ADP-ribosylation/Crystallin J1; Arsenate reductase-like; ADP-ribosyl-(dinitrogen reductase) hydrolase 1647789..1649177 Acidithiobacillus ferrivorans SS3 11042630 YP_004784113.1 CDS Acife_1654 NC_015942.1 1649203 1650840 D TIGRFAM: Nif-specific regulatory protein; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; KEGG: afr:AFE_1527 Nif-specific regulatory protein; SMART: GAF; ATPase, AAA+ type, core; Fis Family transcriptional regulator NifA 1649203..1650840 Acidithiobacillus ferrivorans SS3 11042631 YP_004784114.1 CDS Acife_1655 NC_015942.1 1651104 1652672 D KEGG: afe:Lferr_1245 nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: Nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; Radical SAM; nitrogenase cofactor biosynthesis protein NifB 1651104..1652672 Acidithiobacillus ferrivorans SS3 11042632 YP_004784115.1 CDS Acife_1656 NC_015942.1 1652723 1652941 D PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: afr:AFE_1530 ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1652723..1652941 Acidithiobacillus ferrivorans SS3 11044296 YP_004784116.1 CDS Acife_1657 NC_015942.1 1652951 1653286 D KEGG: afr:AFE_1531 iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis; iron-sulfur cluster assembly accessory protein 1652951..1653286 Acidithiobacillus ferrivorans SS3 11042633 YP_004784117.1 CDS Acife_1658 NC_015942.1 1653327 1653557 D KEGG: afr:AFE_1532 hypothetical protein; hypothetical protein 1653327..1653557 Acidithiobacillus ferrivorans SS3 11042634 YP_004784118.1 CDS Acife_1659 NC_015942.1 1653554 1654066 D KEGG: afr:AFE_1533 hypothetical protein; hypothetical protein 1653554..1654066 Acidithiobacillus ferrivorans SS3 11042635 YP_004784119.1 CDS Acife_1660 NC_015942.1 1654059 1654850 D PFAM: LRV FeS4 cluster; Leucine rich repeat variant; KEGG: afr:AFE_1534 leucine rich repeat protein; LRV FeS4 cluster domain-containing protein 1654059..1654850 Acidithiobacillus ferrivorans SS3 11042636 YP_004784120.1 CDS Acife_1661 NC_015942.1 1654838 1655140 D PFAM: NifZ; KEGG: afe:Lferr_1251 NifZ family protein; NifZ family protein 1654838..1655140 Acidithiobacillus ferrivorans SS3 11044297 YP_004784121.1 CDS Acife_1662 NC_015942.1 1655137 1655391 D PFAM: NifZ; KEGG: afe:Lferr_1252 NifZ family protein; NifZ family protein 1655137..1655391 Acidithiobacillus ferrivorans SS3 11042637 YP_004784122.1 CDS Acife_1663 NC_015942.1 1655388 1656572 D PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: afr:AFE_1537 cysteine desulfurase; class V aminotransferase 1655388..1656572 Acidithiobacillus ferrivorans SS3 11042638 YP_004784123.1 CDS Acife_1664 NC_015942.1 1656585 1656794 D KEGG: afr:AFE_1538 nitrogen fixation protein, putative; TIGRFAM: NifT/FixU; PFAM: NifT/FixU; nitrogen fixation protein FixT 1656585..1656794 Acidithiobacillus ferrivorans SS3 11044298 YP_004784124.1 CDS Acife_1665 NC_015942.1 1656799 1657071 D KEGG: afr:AFE_1539 hypothetical protein; hypothetical protein 1656799..1657071 Acidithiobacillus ferrivorans SS3 11042639 YP_004784125.1 CDS Acife_1666 NC_015942.1 1657068 1658210 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: afr:AFE_1540 aminotransferase, DegT/DnrJ/EryC1/StrS family; DegT/DnrJ/EryC1/StrS aminotransferase 1657068..1658210 Acidithiobacillus ferrivorans SS3 11044299 YP_004784126.1 CDS Acife_1667 NC_015942.1 1658252 1658557 D PFAM: Ferredoxin; KEGG: afr:AFE_1541 ferredoxin, putative; ferredoxin 1658252..1658557 Acidithiobacillus ferrivorans SS3 11042640 YP_004784127.1 CDS Acife_1668 NC_015942.1 1658568 1658792 D KEGG: afr:AFE_1542 hypothetical protein; hypothetical protein 1658568..1658792 Acidithiobacillus ferrivorans SS3 11042641 YP_004784128.1 CDS Acife_1669 NC_015942.1 1658805 1659632 D KEGG: afr:AFE_1543 hypothetical protein; hypothetical protein 1658805..1659632 Acidithiobacillus ferrivorans SS3 11042642 YP_004784129.1 CDS Acife_1670 NC_015942.1 1659649 1660098 D KEGG: afr:AFE_3240 Rrf2 family protein; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2; BadM/Rrf2 family transcriptional regulator 1659649..1660098 Acidithiobacillus ferrivorans SS3 11042643 YP_004784130.1 CDS Acife_1671 NC_015942.1 1660151 1661005 R KEGG: afe:Lferr_1260 ModD protein; TIGRFAM: Putative molybdenum utilization protein ModD; PFAM: Quinolinate phosphoribosyl transferase; modD protein complement(1660151..1661005) Acidithiobacillus ferrivorans SS3 11042644 YP_004784131.1 CDS Acife_1672 NC_015942.1 1661030 1662496 R PFAM: Aldehyde dehydrogenase; KEGG: afr:AFE_1546 succinate-semialdehyde dehydrogenase, putative; aldehyde dehydrogenase complement(1661030..1662496) Acidithiobacillus ferrivorans SS3 11042645 YP_004784132.1 CDS Acife_1673 NC_015942.1 1662689 1663078 D PFAM: Globin, truncated bacterial-like; KEGG: afr:AFE_1548 heme-binding protein, putative; globin 1662689..1663078 Acidithiobacillus ferrivorans SS3 11044300 YP_004784133.1 CDS Acife_1674 NC_015942.1 1663075 1664496 R PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_1547 hypothetical protein; major facilitator superfamily protein complement(1663075..1664496) Acidithiobacillus ferrivorans SS3 11042646 YP_004784134.1 CDS Acife_1675 NC_015942.1 1664713 1665282 D PFAM: Mechanosensitive ion channel MscS; KEGG: afr:AFE_1549 hypothetical protein; mechanosensitive ion channel MscS 1664713..1665282 Acidithiobacillus ferrivorans SS3 11042647 YP_004784135.1 CDS Acife_1676 NC_015942.1 1665279 1666181 D PFAM: Carbohydrate/purine kinase; KEGG: afr:AFE_1550 carbohydrate kinase, PfkB family; PfkB domain-containing protein 1665279..1666181 Acidithiobacillus ferrivorans SS3 11044301 YP_004784136.1 CDS Acife_1677 NC_015942.1 1666183 1668315 D TIGRFAM: Sucrose-phosphate synthase, glycosyltransferase region; HAD-superfamily hydrolase, subfamily IIB; Sucrose phosphate synthase, sucrose phosphatase-like region; KEGG: afr:AFE_1551 sucrose phosphate synthase; PFAM: Sucrose-6F-phosphate phosphohydrolase, plant/cyanobacteria; Glycosyl transferase, group 1; sucrose-phosphate synthase 1666183..1668315 Acidithiobacillus ferrivorans SS3 11042648 YP_004784137.1 CDS Acife_1678 NC_015942.1 1668320 1670701 D PFAM: Sucrose synthase; Glycosyl transferase, group 1; KEGG: afr:AFE_1552 sucrose synthase, putative; sucrose synthase 1668320..1670701 Acidithiobacillus ferrivorans SS3 11044302 YP_004784138.1 CDS Acife_1679 NC_015942.1 1670696 1671202 R PFAM: RES; KEGG: acm:AciX9_3442 RES domain protein; RES domain-containing protein complement(1670696..1671202) Acidithiobacillus ferrivorans SS3 11042649 YP_004784139.1 CDS Acife_1680 NC_015942.1 1671166 1671606 R KEGG: acm:AciX9_3443 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02293; PFAM: Conserved hypothetical protein CHP02293; hypothetical protein complement(1671166..1671606) Acidithiobacillus ferrivorans SS3 11042650 YP_004784140.1 CDS Acife_1681 NC_015942.1 1671769 1673247 D KEGG: afr:AFE_2799 transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II; PFAM: AlkA, N-terminal; Ada DNA repair, metal-binding; Helix-turn-helix, AraC type; HhH-GPD domain; SMART: Helix-turn-helix, AraC domain; HhH-GPD domain; AraC family transcriptional regulator 1671769..1673247 Acidithiobacillus ferrivorans SS3 11042651 YP_004784141.1 CDS Acife_1682 NC_015942.1 1673244 1673768 R KEGG: afr:AFE_1553 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; methylated-DNA/protein-cysteine methyltransferase complement(1673244..1673768) Acidithiobacillus ferrivorans SS3 11042652 YP_004784142.1 CDS Acife_1683 NC_015942.1 1674039 1674272 D KEGG: rlg:Rleg_5863 hypothetical protein; hypothetical protein 1674039..1674272 Acidithiobacillus ferrivorans SS3 11042653 YP_004784143.1 CDS Acife_1684 NC_015942.1 1674272 1674700 D TIGRFAM: Conserved hyprothetical protein CHP00028; KEGG: bvi:Bcep1808_6071 PilT domain-containing protein; PIN domain-containing protein family protein 1674272..1674700 Acidithiobacillus ferrivorans SS3 11044303 YP_004784144.1 CDS Acife_1685 NC_015942.1 1674984 1675469 R KEGG: afr:AFE_1990 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; AsnC family transcriptional regulator complement(1674984..1675469) Acidithiobacillus ferrivorans SS3 11042654 YP_004784145.1 CDS Acife_1686 NC_015942.1 1675611 1677314 D PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; KEGG: afr:AFE_1989 2-isopropylmalate synthase; pyruvate carboxyltransferase 1675611..1677314 Acidithiobacillus ferrivorans SS3 11044304 YP_004784146.1 CDS Acife_1687 NC_015942.1 1677318 1678139 R KEGG: afe:Lferr_0177 hypothetical protein; hypothetical protein complement(1677318..1678139) Acidithiobacillus ferrivorans SS3 11042655 YP_004784147.1 CDS Acife_1688 NC_015942.1 1678361 1679188 R manually curated; hypothetical protein complement(1678361..1679188) Acidithiobacillus ferrivorans SS3 11042656 YP_004784148.1 CDS Acife_1689 NC_015942.1 1679196 1679396 R hypothetical protein complement(1679196..1679396) Acidithiobacillus ferrivorans SS3 11044305 YP_004784149.1 CDS Acife_1690 NC_015942.1 1679467 1681950 R KEGG: afr:AFE_1988 cation-transporting P-type ATPase, putative; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; P-type HAD superfamily ATPase complement(1679467..1681950) Acidithiobacillus ferrivorans SS3 11042657 YP_004784150.1 CDS Acife_1691 NC_015942.1 1681982 1682749 R TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; HAMAP: UDP-2,3-diacylglucosamine hydrolase; KEGG: afr:AFE_1987 UDP-2,3-diacylglucosamine hydrolase; PFAM: Metallophosphoesterase; UDP-2,3-diacylglucosamine hydrolase complement(1681982..1682749) Acidithiobacillus ferrivorans SS3 11044306 YP_004784151.1 CDS Acife_1692 NC_015942.1 1682760 1683272 R PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: afr:AFE_1986 peptidyl-prolyl cis-trans isomerase B; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(1682760..1683272) Acidithiobacillus ferrivorans SS3 11042658 YP_004784152.1 CDS Acife_1693 NC_015942.1 1683460 1685079 R PFAM: Amino acid permease-associated region; KEGG: afr:AFE_1782 amino acid permease family protein; amino acid permease-associated protein complement(1683460..1685079) Acidithiobacillus ferrivorans SS3 11042659 YP_004784153.1 CDS Acife_1694 NC_015942.1 1685780 1686235 D KEGG: afr:AFE_1982 hypothetical protein; hypothetical protein 1685780..1686235 Acidithiobacillus ferrivorans SS3 11042660 YP_004784154.1 CDS Acife_1695 NC_015942.1 1686362 1687702 R TIGRFAM: Exonuclease VII, large subunit; HAMAP: Exodeoxyribonuclease 7 large subunit; KEGG: afr:AFE_1980 exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; exodeoxyribonuclease 7 large subunit complement(1686362..1687702) Acidithiobacillus ferrivorans SS3 11042661 YP_004784155.1 CDS Acife_1696 NC_015942.1 1687862 1688236 D KEGG: afr:AFE_1979 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; thioredoxin 1687862..1688236 Acidithiobacillus ferrivorans SS3 11044307 YP_004784156.1 CDS Acife_1697 NC_015942.1 1688324 1689154 R TIGRFAM: TonB, C-terminal; KEGG: afr:AFE_1978 TonB family protein; TonB family protein complement(1688324..1689154) Acidithiobacillus ferrivorans SS3 11042662 YP_004784157.1 CDS Acife_1698 NC_015942.1 1689269 1690486 R PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_1977 fosmidomycin resistance protein, putative; major facilitator superfamily protein complement(1689269..1690486) Acidithiobacillus ferrivorans SS3 11044308 YP_004784158.1 CDS Acife_1699 NC_015942.1 1690617 1690865 D TIGRFAM: Exonuclease VII, small subunit; HAMAP: Exonuclease VII, small subunit; KEGG: afr:AFE_1976 exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; exodeoxyribonuclease 7 small subunit 1690617..1690865 Acidithiobacillus ferrivorans SS3 11042663 YP_004784159.1 CDS Acife_1700 NC_015942.1 1690862 1691782 D PFAM: Polyprenyl synthetase; KEGG: afr:AFE_1975 geranyltranstransferase; polyprenyl synthetase 1690862..1691782 Acidithiobacillus ferrivorans SS3 11042664 YP_004784160.1 CDS Acife_1701 NC_015942.1 1691779 1693653 D TIGRFAM: Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; KEGG: afr:AFE_1974 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; 1-deoxy-D-xylulose-5-phosphate synthase 1691779..1693653 Acidithiobacillus ferrivorans SS3 11044309 YP_004784161.1 CDS Acife_1702 NC_015942.1 1693696 1694490 D PFAM: Protein of unknown function DUF198; KEGG: afr:AFE_1973 conserved hypothetical protein TIGR00294; hypothetical protein 1693696..1694490 Acidithiobacillus ferrivorans SS3 11042665 YP_004784162.1 CDS Acife_1703 NC_015942.1 1694494 1695585 D KEGG: afr:AFE_1972 chorismate synthase; TIGRFAM: Chorismate synthase; PFAM: Chorismate synthase; chorismate synthase 1694494..1695585 Acidithiobacillus ferrivorans SS3 11044310 YP_004784163.1 CDS Acife_1704 NC_015942.1 1695589 1696752 D PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_1971 transporter, putative; major facilitator superfamily protein 1695589..1696752 Acidithiobacillus ferrivorans SS3 11042666 YP_004784164.1 CDS Acife_1705 NC_015942.1 1696793 1699393 D TIGRFAM: Chaperonin ClpB; PFAM: ATPase associated with various cellular activities, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: afr:AFE_1970 ClpB protein; SMART: ATPase, AAA+ type, core; ATP-dependent chaperone ClpB 1696793..1699393 Acidithiobacillus ferrivorans SS3 11042667 YP_004784165.1 CDS Acife_1706 NC_015942.1 1699401 1700582 R PFAM: Glycosyl transferase, group 1; KEGG: afr:AFE_1427 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase complement(1699401..1700582) Acidithiobacillus ferrivorans SS3 11042668 YP_004784166.1 CDS Acife_1707 NC_015942.1 1700699 1702666 R TIGRFAM: Acetate--CoA ligase; HAMAP: Acetyl-coenzyme A synthetase; KEGG: afr:AFE_1969 acetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase; acetyl-coenzyme A synthetase complement(1700699..1702666) Acidithiobacillus ferrivorans SS3 11042669 YP_004784167.1 CDS Acife_1708 NC_015942.1 1702763 1704748 R PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: afr:AFE_1968 potassium-efflux system protein; sodium/hydrogen exchanger complement(1702763..1704748) Acidithiobacillus ferrivorans SS3 11044311 YP_004784168.1 CDS Acife_1709 NC_015942.1 1704906 1705895 D TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; HAMAP: ADP-L-glycero-D-manno-heptose-6-epimerase; KEGG: afr:AFE_1967 ADP-L-glycero-D-mannoheptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; ADP-L-glycero-D-manno-heptose-6-epimerase 1704906..1705895 Acidithiobacillus ferrivorans SS3 11042670 YP_004784169.1 CDS Acife_1710 NC_015942.1 1705895 1706896 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: afr:AFE_1966 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 1705895..1706896 Acidithiobacillus ferrivorans SS3 11042671 YP_004784170.1 CDS Acife_1711 NC_015942.1 1706889 1707308 D KEGG: afr:AFE_1965 hypothetical protein; hypothetical protein 1706889..1707308 Acidithiobacillus ferrivorans SS3 11044312 YP_004784171.1 CDS Acife_1712 NC_015942.1 1707317 1708438 R PFAM: Fatty acid desaturase, type 1; KEGG: afr:AFE_1964 fatty acid desaturase; fatty acid desaturase complement(1707317..1708438) Acidithiobacillus ferrivorans SS3 11042672 YP_004784172.1 CDS Acife_1713 NC_015942.1 1708549 1709265 R PFAM: Protein of unknown function DUF125, transmembrane; KEGG: afr:AFE_0153 integral membrane protein; hypothetical protein complement(1708549..1709265) Acidithiobacillus ferrivorans SS3 11042673 YP_004784173.1 CDS Acife_1714 NC_015942.1 1709282 1709902 R KEGG: afr:AFE_2246 DsbG domain protein; hypothetical protein complement(1709282..1709902) Acidithiobacillus ferrivorans SS3 11042674 YP_004784174.1 CDS Acife_1715 NC_015942.1 1710322 1710567 D hypothetical protein 1710322..1710567 Acidithiobacillus ferrivorans SS3 11042675 YP_004784175.1 CDS Acife_1717 NC_015942.1 1711026 1711505 D manually curated; hypothetical protein 1711026..1711505 Acidithiobacillus ferrivorans SS3 11042676 YP_004784176.1 CDS Acife_1718 NC_015942.1 1711936 1712505 D KEGG: afr:AFE_3146 rusticyanin; TIGRFAM: Rusticyanin; PFAM: Blue (type 1) copper domain; rusticyanin 1711936..1712505 Acidithiobacillus ferrivorans SS3 11042677 YP_004784177.1 CDS Acife_1719 NC_015942.1 1712607 1712939 D manually curated; KEGG: afr:AFE_0803 hypothetical protein; hypothetical protein 1712607..1712939 Acidithiobacillus ferrivorans SS3 11042678 YP_004784178.1 CDS Acife_1720 NC_015942.1 1712945 1714144 D KEGG: afr:AFE_2654 DNA polymerase IV; HAMAP: DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like; DNA polymerase IV 1712945..1714144 Acidithiobacillus ferrivorans SS3 11042679 YP_004784179.1 CDS Acife_1721 NC_015942.1 1714259 1714498 D KEGG: afr:AFE_2771 SpoVT/AbrB like domain protein; SpoVT/AbrB like domain-containing protein 1714259..1714498 Acidithiobacillus ferrivorans SS3 11044314 YP_004784180.1 CDS Acife_1722 NC_015942.1 1714495 1714905 D PFAM: PilT protein, N-terminal; KEGG: afr:AFE_2655 PIN domain protein; PilT protein domain-containing protein 1714495..1714905 Acidithiobacillus ferrivorans SS3 11042680 YP_004784181.1 CDS Acife_1723 NC_015942.1 1715004 1715615 R hypothetical protein complement(1715004..1715615) Acidithiobacillus ferrivorans SS3 11042681 YP_004784182.1 CDS Acife_1724 NC_015942.1 1715796 1715939 D hypothetical protein 1715796..1715939 Acidithiobacillus ferrivorans SS3 11042682 YP_004784183.1 CDS Acife_1725 NC_015942.1 1716006 1716755 D hypothetical protein 1716006..1716755 Acidithiobacillus ferrivorans SS3 11042683 YP_004784184.1 CDS Acife_1726 NC_015942.1 1717071 1717511 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: noc:Noc_0566 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1717071..1717511 Acidithiobacillus ferrivorans SS3 11042684 YP_004784185.1 CDS Acife_1727 NC_015942.1 1717654 1717941 D KEGG: nhl:Nhal_1040 restriction modification system DNA specificity domain protein; hypothetical protein 1717654..1717941 Acidithiobacillus ferrivorans SS3 11042685 YP_004784186.1 CDS Acife_1728 NC_015942.1 1717938 1718405 D PFAM: TspO/MBR-related protein; KEGG: hna:Hneap_0210 TspO and MBR like protein; TspO and MBR like protein 1717938..1718405 Acidithiobacillus ferrivorans SS3 11044315 YP_004784187.1 CDS Acife_1729 NC_015942.1 1718427 1718678 D PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: afe:Lferr_0929 pyridoxamine 5'-phosphate oxidase-like protein; FMN-binding pyridoxamine 5'-phosphate oxidase-like protein 1718427..1718678 Acidithiobacillus ferrivorans SS3 11042686 YP_004784188.1 CDS Acife_1730 NC_015942.1 1718662 1719237 D KEGG: mpl:Mpal_2429 membrane protein-like protein; hypothetical protein 1718662..1719237 Acidithiobacillus ferrivorans SS3 11042687 YP_004784189.1 CDS Acife_1731 NC_015942.1 1719298 1719879 D KEGG: afr:AFE_0919 hypothetical protein; hypothetical protein 1719298..1719879 Acidithiobacillus ferrivorans SS3 11042688 YP_004784190.1 CDS Acife_1732 NC_015942.1 1719852 1720463 D KEGG: afr:AFE_0918 PAP2 family protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; phosphoesterase PA-phosphatase-like protein 1719852..1720463 Acidithiobacillus ferrivorans SS3 11042689 YP_004784191.1 CDS Acife_1733 NC_015942.1 1720556 1720894 D hypothetical protein 1720556..1720894 Acidithiobacillus ferrivorans SS3 11042690 YP_004784192.1 CDS Acife_1734 NC_015942.1 1720891 1721472 D KEGG: pol:Bpro_5386 hypothetical protein; hypothetical protein 1720891..1721472 Acidithiobacillus ferrivorans SS3 11042691 YP_004784193.1 CDS Acife_1735 NC_015942.1 1721501 1721830 D hypothetical protein 1721501..1721830 Acidithiobacillus ferrivorans SS3 11042692 YP_004784194.1 CDS Acife_1736 NC_015942.1 1722136 1723116 R KEGG: rpc:RPC_0124 hypothetical protein; hypothetical protein complement(1722136..1723116) Acidithiobacillus ferrivorans SS3 11044316 YP_004784195.1 CDS Acife_1737 NC_015942.1 1723421 1724713 R KEGG: sjp:SJA_C1-26360 hypothetical protein; hypothetical protein complement(1723421..1724713) Acidithiobacillus ferrivorans SS3 11042693 YP_004784196.1 CDS Acife_1740 NC_015942.1 1726593 1727018 R PFAM: Ferric-uptake regulator; KEGG: afe:Lferr_1623 Fur family ferric uptake regulator; Fur family ferric uptake regulator complement(1726593..1727018) Acidithiobacillus ferrivorans SS3 11044318 YP_004784197.1 CDS Acife_1741 NC_015942.1 1727085 1728176 R PFAM: FAD dependent oxidoreductase; KEGG: afr:AFE_1956 oxidoreductase, FAD-binding; FAD dependent oxidoreductase complement(1727085..1728176) Acidithiobacillus ferrivorans SS3 11042696 YP_004784198.1 CDS Acife_1742 NC_015942.1 1728194 1731751 R PFAM: Protein of unknown function DUF490; KEGG: afr:AFE_1957 hypothetical protein; hypothetical protein complement(1728194..1731751) Acidithiobacillus ferrivorans SS3 11042697 YP_004784199.1 CDS Acife_1743 NC_015942.1 1731748 1733505 R PFAM: Bacterial surface antigen (D15); Surface antigen variable number; KEGG: afe:Lferr_1626 surface antigen (D15); surface antigen (D15) complement(1731748..1733505) Acidithiobacillus ferrivorans SS3 11042698 YP_004784200.1 CDS Acife_1744 NC_015942.1 1733766 1734029 R KEGG: afr:AFE_1959 hypothetical protein; hypothetical protein complement(1733766..1734029) Acidithiobacillus ferrivorans SS3 11042699 YP_004784201.1 CDS Acife_1745 NC_015942.1 1734340 1735572 R PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_1961 AmpG permease protein, putative; major facilitator superfamily protein complement(1734340..1735572) Acidithiobacillus ferrivorans SS3 11044319 YP_004784202.1 CDS Acife_1747 NC_015942.1 1736005 1736250 R KEGG: afe:Lferr_1631 hypothetical protein; hypothetical protein complement(1736005..1736250) Acidithiobacillus ferrivorans SS3 11042701 YP_004784203.1 CDS Acife_1748 NC_015942.1 1736667 1737110 R KEGG: afr:AFE_0099 hypothetical protein; hypothetical protein complement(1736667..1737110) Acidithiobacillus ferrivorans SS3 11044320 YP_004784204.1 CDS Acife_1749 NC_015942.1 1737201 1737998 R KEGG: afr:AFE_0537 PAP2 family protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; phosphoesterase PA-phosphatase-like protein complement(1737201..1737998) Acidithiobacillus ferrivorans SS3 11042702 YP_004784205.1 CDS Acife_1750 NC_015942.1 1738094 1739344 R KEGG: bpy:Bphyt_0287 major facilitator superfamily MFS_1; manually curated; PFAM: Major facilitator superfamily MFS-1; major facilitator superfamily protein complement(1738094..1739344) Acidithiobacillus ferrivorans SS3 11044321 YP_004784206.1 CDS Acife_1751 NC_015942.1 1740061 1740903 R PFAM: Heat shock protein Hsp33 protein; KEGG: afr:AFE_1408 33 kDa chaperonin; Hsp33 protein complement(1740061..1740903) Acidithiobacillus ferrivorans SS3 11042704 YP_004784207.1 CDS Acife_1752 NC_015942.1 1740896 1741666 R PFAM: PP-loop; KEGG: afr:AFE_1407 PP-loop family protein; PP-loop domain-containing protein complement(1740896..1741666) Acidithiobacillus ferrivorans SS3 11042705 YP_004784208.1 CDS Acife_1753 NC_015942.1 1741668 1742639 R KEGG: afr:AFE_1406 kinase, PfkB family; TIGRFAM: RfaE bifunctional protein, domain I; PFAM: Carbohydrate/purine kinase; rfaE bifunctional protein complement(1741668..1742639) Acidithiobacillus ferrivorans SS3 11042706 YP_004784209.1 CDS Acife_1754 NC_015942.1 1742620 1743942 R KEGG: afr:AFE_1405 UDP-glucose 6-dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; nucleotide sugar dehydrogenase complement(1742620..1743942) Acidithiobacillus ferrivorans SS3 11044322 YP_004784210.1 CDS Acife_1755 NC_015942.1 1743946 1744335 R TIGRFAM: Holo-[acyl carrier protein] synthase; Phosphopantethiene-protein transferase; HAMAP: Holo-[acyl-carrier-protein] synthase; KEGG: afr:AFE_1404 holo-(acyl-carrier-protein) synthase; PFAM: 4'-phosphopantetheinyl transferase; holo-ACP synthase complement(1743946..1744335) Acidithiobacillus ferrivorans SS3 11042707 YP_004784211.1 CDS Acife_1756 NC_015942.1 1744332 1745057 R TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: afr:AFE_1403 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; pyridoxine 5'-phosphate synthase complement(1744332..1745057) Acidithiobacillus ferrivorans SS3 11044323 YP_004784212.1 CDS Acife_1757 NC_015942.1 1745054 1745824 R TIGRFAM: Recombination protein O, RecO; HAMAP: DNA repair protein recO; KEGG: afr:AFE_1402 DNA repair protein RecO, putative; PFAM: Recombination protein O, RecO; DNA repair protein recO complement(1745054..1745824) Acidithiobacillus ferrivorans SS3 11042708 YP_004784213.1 CDS Acife_1758 NC_015942.1 1745814 1746728 R TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; HAMAP: GTP-binding protein Era; KEGG: afr:AFE_1401 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2; GTP-binding protein Era-like-protein complement(1745814..1746728) Acidithiobacillus ferrivorans SS3 11042709 YP_004784214.1 CDS Acife_1759 NC_015942.1 1746721 1747401 R SMART: Ribonuclease III; Double-stranded RNA binding; TIGRFAM: Ribonuclease III, bacterial; KEGG: afr:AFE_1400 ribonuclease III; HAMAP: Ribonuclease III, bacterial; PFAM: Ribonuclease III; Double-stranded RNA binding; ribonuclease 3 complement(1746721..1747401) Acidithiobacillus ferrivorans SS3 11044324 YP_004784215.1 CDS Acife_1760 NC_015942.1 1747466 1747900 R KEGG: afr:AFE_1399 hypothetical protein; hypothetical protein complement(1747466..1747900) Acidithiobacillus ferrivorans SS3 11042710 YP_004784216.1 CDS Acife_1761 NC_015942.1 1747988 1748779 R KEGG: afr:AFE_1398 signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; signal peptidase I complement(1747988..1748779) Acidithiobacillus ferrivorans SS3 11042711 YP_004784217.1 CDS Acife_1762 NC_015942.1 1748846 1750648 R TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; HAMAP: GTP-binding protein lepA; KEGG: afr:AFE_1397 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; GTP-binding protein lepA complement(1748846..1750648) Acidithiobacillus ferrivorans SS3 11042712 YP_004784218.1 CDS Acife_1763 NC_015942.1 1750754 1752238 R TIGRFAM: Peptidase S1C, Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; KEGG: afe:Lferr_1117 protease Do; SMART: PDZ/DHR/GLGF; protease Do complement(1750754..1752238) Acidithiobacillus ferrivorans SS3 11042713 YP_004784219.1 CDS Acife_1764 NC_015942.1 1752374 1753039 R KEGG: afr:AFE_1395 hypothetical protein; hypothetical protein complement(1752374..1753039) Acidithiobacillus ferrivorans SS3 11042714 YP_004784220.1 CDS Acife_1765 NC_015942.1 1753036 1753662 R KEGG: afr:AFE_1394 RNA polymerase sigma-E factor; TIGRFAM: RNA polymerase sigma-70 RpoE type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit complement(1753036..1753662) Acidithiobacillus ferrivorans SS3 11044325 YP_004784221.1 CDS Acife_1766 NC_015942.1 1753778 1755367 D KEGG: afr:AFE_1392 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; L-aspartate oxidase 1753778..1755367 Acidithiobacillus ferrivorans SS3 11042715 YP_004784222.1 CDS Acife_1767 NC_015942.1 1755312 1755809 R KEGG: afr:AFE_1393 hypothetical protein; hypothetical protein complement(1755312..1755809) Acidithiobacillus ferrivorans SS3 11042716 YP_004784223.1 CDS Acife_1768 NC_015942.1 1755826 1756791 D KEGG: afr:AFE_1391 folate-binding protein YgfZ; TIGRFAM: Folate-binding, YgfZ; PFAM: Glycine cleavage T-protein, N-terminal; folate-binding protein YgfZ 1755826..1756791 Acidithiobacillus ferrivorans SS3 11042717 YP_004784224.1 CDS Acife_1769 NC_015942.1 1756795 1757145 D KEGG: afr:AFE_1389 hypothetical protein; hypothetical protein 1756795..1757145 Acidithiobacillus ferrivorans SS3 11042718 YP_004784225.1 CDS Acife_1770 NC_015942.1 1757197 1758336 R PFAM: FIST C domain; FIST domain, N-terminal; KEGG: afr:AFE_1387 hypothetical protein; FIST C domain-containing protein complement(1757197..1758336) Acidithiobacillus ferrivorans SS3 11042719 YP_004784226.1 CDS Acife_1771 NC_015942.1 1758639 1759397 R KEGG: afr:AFE_0993 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein complement(1758639..1759397) Acidithiobacillus ferrivorans SS3 11042720 YP_004784227.1 CDS Acife_1772 NC_015942.1 1759394 1760167 R KEGG: afr:AFE_0992 hydrolase, TatD family; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related; hydrolase, TatD family complement(1759394..1760167) Acidithiobacillus ferrivorans SS3 11042721 YP_004784228.1 CDS Acife_1773 NC_015942.1 1760191 1760958 R KEGG: afr:AFE_0991 tRNA (guanosine-2'-O-)-methyltransferase, putative; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; TrmH family RNA methyltransferase complement(1760191..1760958) Acidithiobacillus ferrivorans SS3 11044327 YP_004784229.1 CDS Acife_1774 NC_015942.1 1760951 1761418 R KEGG: afe:Lferr_1104 hypothetical protein; hypothetical protein complement(1760951..1761418) Acidithiobacillus ferrivorans SS3 11042722 YP_004784230.1 CDS Acife_1775 NC_015942.1 1761472 1761897 R KEGG: afe:Lferr_1103 hypothetical protein; hypothetical protein complement(1761472..1761897) Acidithiobacillus ferrivorans SS3 11042723 YP_004784231.1 CDS Acife_1776 NC_015942.1 1761988 1762983 R PFAM: Uncharacterised protein family UPF0118; KEGG: afr:AFE_0988 hypothetical protein; hypothetical protein complement(1761988..1762983) Acidithiobacillus ferrivorans SS3 11044328 YP_004784232.1 CDS Acife_1777 NC_015942.1 1763130 1763990 R KEGG: afr:AFE_0987 hypothetical protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal; PHP domain-containing protein complement(1763130..1763990) Acidithiobacillus ferrivorans SS3 11042724 YP_004784233.1 CDS Acife_1778 NC_015942.1 1764094 1764819 D KEGG: afr:AFE_0986 hypothetical protein; hypothetical protein 1764094..1764819 Acidithiobacillus ferrivorans SS3 11044329 YP_004784234.1 CDS Acife_1779 NC_015942.1 1764914 1765516 R PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal; KEGG: afr:AFE_0985 antioxidant, AhpC/Tsa family; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen complement(1764914..1765516) Acidithiobacillus ferrivorans SS3 11042725 YP_004784235.1 CDS Acife_1780 NC_015942.1 1765730 1766053 D PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: afr:AFE_0984 ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1765730..1766053 Acidithiobacillus ferrivorans SS3 11042726 YP_004784236.1 CDS Acife_1781 NC_015942.1 1766050 1767738 D KEGG: afr:AFE_0983 ABC transporter, ATP-binding protein, MsbA family; PFAM: ABC transporter-like; ABC transporter, transmembrane region; SMART: ATPase, AAA+ type, core; ABC transporter 1766050..1767738 Acidithiobacillus ferrivorans SS3 11044330 YP_004784237.1 CDS Acife_1782 NC_015942.1 1767756 1769765 R KEGG: gca:Galf_1825 hypothetical protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like; transglutaminase domain-containing protein complement(1767756..1769765) Acidithiobacillus ferrivorans SS3 11042727 YP_004784238.1 CDS Acife_1783 NC_015942.1 1769769 1770770 R KEGG: geb:GM18_1177 hypothetical protein; hypothetical protein complement(1769769..1770770) Acidithiobacillus ferrivorans SS3 11042728 YP_004784239.1 CDS Acife_1784 NC_015942.1 1770767 1771675 R KEGG: pag:PLES_21891 putative MoxR protein; PFAM: ATPase associated with various cellular activities, AAA-3; SMART: ATPase, AAA+ type, core; ATPase complement(1770767..1771675) Acidithiobacillus ferrivorans SS3 11042729 YP_004784240.1 CDS Acife_1785 NC_015942.1 1771672 1773102 R PFAM: Glycine cleavage system P-protein, N-terminal; KEGG: afr:AFE_0982 glycine dehydrogenase subunit 2; glycine cleavage system P-protein complement(1771672..1773102) Acidithiobacillus ferrivorans SS3 11042730 YP_004784241.1 CDS Acife_1786 NC_015942.1 1773099 1774442 R PFAM: Glycine cleavage system P-protein, N-terminal; KEGG: afr:AFE_0981 glycine dehydrogenase subunit 1; glycine cleavage system P-protein complement(1773099..1774442) Acidithiobacillus ferrivorans SS3 11042731 YP_004784242.1 CDS Acife_1787 NC_015942.1 1774447 1774830 R TIGRFAM: Glycine cleavage H-protein, subgroup; HAMAP: Glycine cleavage H-protein; KEGG: afr:AFE_0980 glycine cleavage system H protein; PFAM: Glycine cleavage H-protein; glycine cleavage system H protein complement(1774447..1774830) Acidithiobacillus ferrivorans SS3 11044331 YP_004784243.1 CDS Acife_1788 NC_015942.1 1774827 1775954 R KEGG: afe:Lferr_1093 glycine cleavage system T protein; TIGRFAM: Glycine cleavage system T protein; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; glycine cleavage system T protein complement(1774827..1775954) Acidithiobacillus ferrivorans SS3 11042732 YP_004784244.1 CDS Acife_1789 NC_015942.1 1776043 1776528 R KEGG: afr:AFE_0977 hypothetical protein; HAMAP: UPF0234 protein yajQ; PFAM: Protein of unknown function DUF520; hypothetical protein complement(1776043..1776528) Acidithiobacillus ferrivorans SS3 11042733 YP_004784245.1 CDS Acife_1790 NC_015942.1 1776540 1777025 R PFAM: Molybdopterin biosynthesis MoaE; KEGG: afr:AFE_0976 molybdopterin converting factor, subunit 2; molybdopterin biosynthesis MoaE protein complement(1776540..1777025) Acidithiobacillus ferrivorans SS3 11042734 YP_004784246.1 CDS Acife_1791 NC_015942.1 1777028 1777270 R PFAM: ThiamineS; KEGG: afr:AFE_0975 molybdopterin converting factor, subunit 1; sulfur carrier protein ThiS complement(1777028..1777270) Acidithiobacillus ferrivorans SS3 11044332 YP_004784247.1 CDS Acife_1792 NC_015942.1 1777377 1778378 D KEGG: afr:AFE_0973 putative periplasmic protease; manually curated; PFAM: Peptidase S49, N-terminal proteobacteria; Peptidase S49; peptidase S49 domain-containing protein 1777377..1778378 Acidithiobacillus ferrivorans SS3 11042735 YP_004784248.1 CDS Acife_1793 NC_015942.1 1778537 1778938 R KEGG: afr:AFE_0965 hypothetical protein; hypothetical protein complement(1778537..1778938) Acidithiobacillus ferrivorans SS3 11042736 YP_004784249.1 CDS Acife_1794 NC_015942.1 1778951 1779367 R PFAM: Protein of unknown function DUF423; KEGG: afr:AFE_0964 hypothetical protein; hypothetical protein complement(1778951..1779367) Acidithiobacillus ferrivorans SS3 11042737 YP_004784250.1 CDS Acife_1795 NC_015942.1 1779494 1780540 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: afr:AFE_0963 male sterility protein; NAD-dependent epimerase/dehydratase 1779494..1780540 Acidithiobacillus ferrivorans SS3 11042738 YP_004784251.1 CDS Acife_1796 NC_015942.1 1780553 1780969 R KEGG: hap:HAPS_0017 Sel1 domain protein, repeat-containing protein; PFAM: Sel1-like; SMART: Sel1-like; Sel1 domain-containing protein repeat-containing protein complement(1780553..1780969) Acidithiobacillus ferrivorans SS3 11044333 YP_004784252.1 CDS Acife_1797 NC_015942.1 1780969 1783062 R PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_0962 glucosyltransferase MdoH; family 2 glycosyl transferase complement(1780969..1783062) Acidithiobacillus ferrivorans SS3 11042739 YP_004784253.1 CDS Acife_1798 NC_015942.1 1783065 1783571 R KEGG: afr:AFE_0961 hypothetical protein; hypothetical protein complement(1783065..1783571) Acidithiobacillus ferrivorans SS3 11042740 YP_004784254.1 CDS Acife_1799 NC_015942.1 1783577 1785112 R PFAM: Glucan biosynthesis, periplasmic, MdoG C-terminal; KEGG: afr:AFE_0960 glucan biosynthesis protein D; periplasmic glucan biosynthesis protein MdoG complement(1783577..1785112) Acidithiobacillus ferrivorans SS3 11044334 YP_004784255.1 CDS Acife_1800 NC_015942.1 1785228 1785473 D hypothetical protein 1785228..1785473 Acidithiobacillus ferrivorans SS3 11042741 YP_004784256.1 CDS Acife_1801 NC_015942.1 1785463 1786932 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: afr:AFE_0958 pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1785463..1786932 Acidithiobacillus ferrivorans SS3 11042742 YP_004784257.1 CDS Acife_1802 NC_015942.1 1786954 1787436 R KEGG: afr:AFE_0949 hypothetical protein; hypothetical protein complement(1786954..1787436) Acidithiobacillus ferrivorans SS3 11042743 YP_004784258.1 CDS Acife_1803 NC_015942.1 1787427 1788110 R PFAM: Phospholipase/carboxylesterase; KEGG: afe:Lferr_1073 phospholipase/carboxylesterase; phospholipase/carboxylesterase complement(1787427..1788110) Acidithiobacillus ferrivorans SS3 11042744 YP_004784259.1 CDS Acife_1804 NC_015942.1 1788094 1789455 R KEGG: afr:AFE_0957 sigma-54 dependent transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; Fis family sigma-54 specific transcriptional regulator complement(1788094..1789455) Acidithiobacillus ferrivorans SS3 11042745 YP_004784260.1 CDS Acife_1805 NC_015942.1 1789581 1791464 R TIGRFAM: Thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC; KEGG: afr:AFE_0948 thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC; phosphomethylpyrimidine synthase complement(1789581..1791464) Acidithiobacillus ferrivorans SS3 11042746 YP_004784261.1 CDS Acife_1806 NC_015942.1 1791676 1794042 R PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: type III restriction protein res subunit; type III restriction protein res subunit complement(1791676..1794042) Acidithiobacillus ferrivorans SS3 11042747 YP_004784262.1 CDS Acife_1807 NC_015942.1 1793984 1794337 R PFAM: Protein of unknown function DUF86; KEGG: nhl:Nhal_0890 protein of unknown function DUF86; hypothetical protein complement(1793984..1794337) Acidithiobacillus ferrivorans SS3 11042748 YP_004784263.1 CDS Acife_1808 NC_015942.1 1794330 1794620 R PFAM: Nucleotidyltransferase; KEGG: psa:PST_1417 nucleotidyltransferase family protein; DNA polymerase beta domain-containing protein complement(1794330..1794620) Acidithiobacillus ferrivorans SS3 11044335 YP_004784264.1 CDS Acife_1809 NC_015942.1 1794620 1795342 R KEGG: neu:NE2309 adenine specific DNA methylase Mod; adenine specific DNA methylase Mod complement(1794620..1795342) Acidithiobacillus ferrivorans SS3 11042749 YP_004784265.1 CDS Acife_1810 NC_015942.1 1795339 1796175 R PFAM: KilA, N-terminal/APSES-type HTH DNA-binding domain; KEGG: nit:NAL212_1509 KilA,/APSES-type HTH DNA-binding domain; KilA/APSES-type HTH DNA-binding domain-containing protein complement(1795339..1796175) Acidithiobacillus ferrivorans SS3 11042750 YP_004784266.1 CDS Acife_1812 NC_015942.1 1796581 1798173 D KEGG: afr:AFE_0945 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 1796581..1798173 Acidithiobacillus ferrivorans SS3 11042752 YP_004784267.1 CDS Acife_1813 NC_015942.1 1798186 1798494 R KEGG: afr:AFE_0944 hypothetical protein; hypothetical protein complement(1798186..1798494) Acidithiobacillus ferrivorans SS3 11042753 YP_004784268.1 CDS Acife_1814 NC_015942.1 1798478 1799929 R PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; KEGG: afr:AFE_0943 phosphomannomutase, putative; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I complement(1798478..1799929) Acidithiobacillus ferrivorans SS3 11044336 YP_004784269.1 CDS Acife_1815 NC_015942.1 1800109 1803447 D KEGG: afr:AFE_0942 DNA helicase, SNF2/RAD54 family; PFAM: SNF2-related; Zinc finger, SWIM-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SNF2-like protein 1800109..1803447 Acidithiobacillus ferrivorans SS3 11042754 YP_004784270.1 CDS Acife_1816 NC_015942.1 1803574 1803768 D hypothetical protein 1803574..1803768 Acidithiobacillus ferrivorans SS3 11042755 YP_004784271.1 CDS Acife_1817 NC_015942.1 1803755 1805731 D PFAM: Lytic transglycosylase-like, catalytic; KEGG: afe:Lferr_1059 lytic transglycosylase catalytic subunit; lytic transglycosylase 1803755..1805731 Acidithiobacillus ferrivorans SS3 11044337 YP_004784272.1 CDS Acife_1818 NC_015942.1 1805698 1806912 D KEGG: afr:AFE_0940 [NiFe] hydrogenase, beta subunit, putative; (NiFe) hydrogenase subunit beta 1805698..1806912 Acidithiobacillus ferrivorans SS3 11042756 YP_004784273.1 CDS Acife_1819 NC_015942.1 1806905 1807735 D PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: afr:AFE_0939 [NiFe] hydrogenase, gamma subunit, putative; oxidoreductase FAD/NAD(P)-binding domain-containing protein 1806905..1807735 Acidithiobacillus ferrivorans SS3 11044338 YP_004784274.1 CDS Acife_1820 NC_015942.1 1807740 1808537 D PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; KEGG: afr:AFE_0938 [NiFe] hydrogenase, delta subunit, putative; NADH ubiquinone oxidoreductase 20 kDa subunit 1807740..1808537 Acidithiobacillus ferrivorans SS3 11042757 YP_004784275.1 CDS Acife_1821 NC_015942.1 1808521 1809819 D PFAM: Nickel-dependent hydrogenase, large subunit; KEGG: afe:Lferr_1055 nickel-dependent hydrogenase large subunit; nickel-dependent hydrogenase large subunit 1808521..1809819 Acidithiobacillus ferrivorans SS3 11042758 YP_004784276.1 CDS Acife_1822 NC_015942.1 1809816 1810310 D KEGG: afr:AFE_0936 hydrogenase maturation protease; TIGRFAM: Peptidase A31, hydrogen uptake protein; PFAM: Peptidase A31, hydrogen uptake protein; hydrogenase maturation protease 1809816..1810310 Acidithiobacillus ferrivorans SS3 11042759 YP_004784277.1 CDS Acife_1823 NC_015942.1 1810279 1811331 R KEGG: rme:Rmet_1540 hydrogenase expression/formation protein HypE; TIGRFAM: Hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; hydrogenase expression/formation protein HypE complement(1810279..1811331) Acidithiobacillus ferrivorans SS3 11044339 YP_004784278.1 CDS Acife_1824 NC_015942.1 1811331 1812503 R KEGG: afr:AFE_3290 hydrogenase expression/formation protein HypD; TIGRFAM: Hydrogenase formation HypD protein; PFAM: Hydrogenase formation HypD protein; hydrogenase expression/formation protein HypD complement(1811331..1812503) Acidithiobacillus ferrivorans SS3 11042760 YP_004784279.1 CDS Acife_1825 NC_015942.1 1812500 1812745 R KEGG: afr:AFE_3289 hydrogenase assembly chaperone HypC; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC; PFAM: Hydrogenase expression/formation protein, HupF/HypC; hydrogenase assembly chaperone hypC/hupF complement(1812500..1812745) Acidithiobacillus ferrivorans SS3 11042761 YP_004784280.1 CDS Acife_1826 NC_015942.1 1812759 1815083 R TIGRFAM: Hydrogenase maturation factor, HypF-type; HAMAP: Acylphosphatase; KEGG: rme:Rmet_1537 (NiFe) hydrogenase maturation protein HypF; PFAM: Sua5/YciO/YrdC, N-terminal; Acylphosphatase-like; Zinc finger, HypF-type; acylphosphatase complement(1812759..1815083) Acidithiobacillus ferrivorans SS3 11042762 YP_004784281.1 CDS Acife_1827 NC_015942.1 1815083 1815973 R KEGG: afe:Lferr_2886 hydrogenase accessory protein HypB; TIGRFAM: Hydrogenase accessory protein HypB; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; hydrogenase accessory protein HypB complement(1815083..1815973) Acidithiobacillus ferrivorans SS3 11042763 YP_004784282.1 CDS Acife_1828 NC_015942.1 1815970 1816311 R TIGRFAM: Hydrogenase nickel incorporation protein HypA/HybF; HAMAP: Hydrogenase nickel incorporation protein HypA/HybF; KEGG: afr:AFE_3287 hydrogenase nickel insertion protein HypA; PFAM: Hydrogenase nickel incorporation protein HypA/HybF; hydrogenase nickel incorporation protein hypA complement(1815970..1816311) Acidithiobacillus ferrivorans SS3 11044340 YP_004784283.1 CDS Acife_1829 NC_015942.1 1816536 1817132 D KEGG: afr:AFE_0935 hypothetical protein; hypothetical protein 1816536..1817132 Acidithiobacillus ferrivorans SS3 11042764 YP_004784284.1 CDS Acife_1830 NC_015942.1 1817129 1819765 R KEGG: afr:AFE_0934 alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; alanyl-tRNA synthetase complement(1817129..1819765) Acidithiobacillus ferrivorans SS3 11042765 YP_004784285.1 CDS Acife_1831 NC_015942.1 1819814 1820272 R KEGG: afr:AFE_0933 regulatory protein RecX; HAMAP: Regulatory protein recX; PFAM: Regulatory protein RecX; regulatory protein recX complement(1819814..1820272) Acidithiobacillus ferrivorans SS3 11042766 YP_004784286.1 CDS Acife_1832 NC_015942.1 1820273 1821319 R SMART: ATPase, AAA+ type, core; TIGRFAM: DNA recombination and repair protein RecA; KEGG: afr:AFE_0932 RecA protein; HAMAP: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA; protein recA complement(1820273..1821319) Acidithiobacillus ferrivorans SS3 11044341 YP_004784287.1 CDS Acife_1833 NC_015942.1 1821538 1822386 R KEGG: afr:AFE_0930 CinA family protein; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal; CinA domain-containing protein complement(1821538..1822386) Acidithiobacillus ferrivorans SS3 11042767 YP_004784288.1 CDS Acife_1834 NC_015942.1 1822383 1822871 R PFAM: Phosphatidylglycerophosphatase A; KEGG: afr:AFE_0929 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A complement(1822383..1822871) Acidithiobacillus ferrivorans SS3 11044342 YP_004784289.1 CDS Acife_1835 NC_015942.1 1822861 1823883 R KEGG: afr:AFE_0928 thiamine-monophosphate kinase; TIGRFAM: Thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal; thiamine-monophosphate kinase complement(1822861..1823883) Acidithiobacillus ferrivorans SS3 11042768 YP_004784290.1 CDS Acife_1836 NC_015942.1 1823945 1824820 D KEGG: afr:AFE_0927 glutamyl-tRNA synthetase-related protein; TIGRFAM: glutamyl-queuosine tRNA(Asp) synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-queuosine tRNA(Asp) synthetase 1823945..1824820 Acidithiobacillus ferrivorans SS3 11042769 YP_004784291.1 CDS Acife_1837 NC_015942.1 1824847 1825545 D TIGRFAM: Sugar fermentation stimulation protein; HAMAP: Sugar fermentation stimulation protein; KEGG: afr:AFE_0926 sugar fermentation stimulation protein; PFAM: Sugar fermentation stimulation protein; Sugar fermentation stimulation protein A 1824847..1825545 Acidithiobacillus ferrivorans SS3 11044343 YP_004784292.1 CDS Acife_1838 NC_015942.1 1825564 1826373 D KEGG: afr:AFE_0925 methionine aminopeptidase, type I; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; PFAM: Peptidase M24, structural domain; methionine aminopeptidase, type I 1825564..1826373 Acidithiobacillus ferrivorans SS3 11042770 YP_004784293.1 CDS Acife_1839 NC_015942.1 1826376 1828967 D SMART: Metal-dependent phosphohydrolase, HD region; TIGRFAM: Protein-PII uridylyltransferase; KEGG: afr:AFE_0924 protein-P-II uridylyltransferase; HAMAP: Protein-PII uridylyltransferase; PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Nucleotidyltransferase; Metal-dependent phosphohydrolase, HD region, subdomain; Amino acid-binding ACT; UTP-GlnB uridylyltransferase, GlnD 1826376..1828967 Acidithiobacillus ferrivorans SS3 11044344 YP_004784294.1 CDS Acife_1840 NC_015942.1 1829038 1829706 D KEGG: afr:AFE_0923 hypothetical protein; HAMAP: Uncharacterised protein family UPF0274; PFAM: Uncharacterised protein family UPF0274; High frequency lysogenization protein hflD 1829038..1829706 Acidithiobacillus ferrivorans SS3 11042771 YP_004784295.1 CDS Acife_1841 NC_015942.1 1829986 1831005 R hypothetical protein complement(1829986..1831005) Acidithiobacillus ferrivorans SS3 11042772 YP_004784296.1 CDS Acife_1842 NC_015942.1 1831367 1832302 R PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: afr:AFE_0131 hypothetical protein; cytochrome c oxidase caa3-type, assembly factor CtaG-like protein complement(1831367..1832302) Acidithiobacillus ferrivorans SS3 11042773 YP_004784297.1 CDS Acife_1845 NC_015942.1 1834137 1834358 R hypothetical protein complement(1834137..1834358) Acidithiobacillus ferrivorans SS3 11042774 YP_004784298.1 CDS Acife_1846 NC_015942.1 1834432 1834749 R hypothetical protein complement(1834432..1834749) Acidithiobacillus ferrivorans SS3 11042775 YP_004784299.1 CDS Acife_1847 NC_015942.1 1834839 1835513 D KEGG: afr:AFE_1943 DsbG domain protein; DsbG domain-containing protein 1834839..1835513 Acidithiobacillus ferrivorans SS3 11042776 YP_004784300.1 CDS Acife_1848 NC_015942.1 1835583 1835948 R KEGG: afr:AFE_3114 hypothetical protein; hypothetical protein complement(1835583..1835948) Acidithiobacillus ferrivorans SS3 11042777 YP_004784301.1 CDS Acife_1849 NC_015942.1 1836094 1837281 R KEGG: afe:Lferr_2711 cytochrome c-type biogenesis protein CcsB; TIGRFAM: Cytochrome c-type biogenesis protein CcsA; PFAM: Cytochrome c assembly protein; cytochrome c-type biogenesis protein CcsB complement(1836094..1837281) Acidithiobacillus ferrivorans SS3 11042778 YP_004784302.1 CDS Acife_1850 NC_015942.1 1837274 1839124 R PFAM: ResB-like; KEGG: afr:AFE_3112 cytochrome c-type biogenesis protein ResB; ResB family protein complement(1837274..1839124) Acidithiobacillus ferrivorans SS3 11042779 YP_004784303.1 CDS Acife_1851 NC_015942.1 1839121 1839381 R hypothetical protein complement(1839121..1839381) Acidithiobacillus ferrivorans SS3 11044347 YP_004784304.1 CDS Acife_1853 NC_015942.1 1839991 1840791 R KEGG: afr:AFE_3133 hypothetical protein; hypothetical protein complement(1839991..1840791) Acidithiobacillus ferrivorans SS3 11042781 YP_004784305.1 CDS Acife_1854 NC_015942.1 1841251 1841655 D KEGG: afr:AFE_3135 hypothetical protein; hypothetical protein 1841251..1841655 Acidithiobacillus ferrivorans SS3 11044348 YP_004784306.1 CDS Acife_1855 NC_015942.1 1841973 1842311 R PFAM: Conjugal transfer, TraD, alpha-type; conjugal transfer TraD family protein complement(1841973..1842311) Acidithiobacillus ferrivorans SS3 11042782 YP_004784307.1 CDS Acife_1857 NC_015942.1 1843104 1844357 D KEGG: afr:AFE_3136 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; integral membrane sensor signal transduction histidine kinase 1843104..1844357 Acidithiobacillus ferrivorans SS3 11042784 YP_004784308.1 CDS Acife_1858 NC_015942.1 1844357 1844932 D KEGG: afe:Lferr_2736 two component fis family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; two component Fis family transcriptional regulator 1844357..1844932 Acidithiobacillus ferrivorans SS3 11042785 YP_004784309.1 CDS Acife_1859 NC_015942.1 1844992 1845630 R KEGG: afr:AFE_3138 oxidoreductase, 2OG-Fe(II) oxygenase family; PFAM: Oxoglutarate/iron-dependent oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; 2OG-Fe(II) oxygenase complement(1844992..1845630) Acidithiobacillus ferrivorans SS3 11042786 YP_004784310.1 CDS Acife_1860 NC_015942.1 1845920 1846447 R KEGG: afr:AFE_3139 hypothetical protein; hypothetical protein complement(1845920..1846447) Acidithiobacillus ferrivorans SS3 11042787 YP_004784311.1 CDS Acife_1861 NC_015942.1 1846728 1847921 R PFAM: Major facilitator superfamily MFS-1; KEGG: afe:Lferr_2740 major facilitator superfamily protein; major facilitator superfamily protein complement(1846728..1847921) Acidithiobacillus ferrivorans SS3 11044349 YP_004784312.1 CDS Acife_1862 NC_015942.1 1847965 1848909 R TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: afr:AFE_3143 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; protoheme IX farnesyltransferase complement(1847965..1848909) Acidithiobacillus ferrivorans SS3 11042788 YP_004784313.1 CDS Acife_1863 NC_015942.1 1848927 1849880 R KEGG: afe:Lferr_2742 hypothetical protein; hypothetical protein complement(1848927..1849880) Acidithiobacillus ferrivorans SS3 11044350 YP_004784314.1 CDS Acife_1864 NC_015942.1 1850171 1850734 R KEGG: afr:AFE_3146 rusticyanin; TIGRFAM: Rusticyanin; PFAM: Blue (type 1) copper domain; rusticyanin complement(1850171..1850734) Acidithiobacillus ferrivorans SS3 11044351 YP_004784315.1 CDS Acife_1865 NC_015942.1 1850864 1851004 R KEGG: afe:Lferr_2744 hypothetical protein; hypothetical protein complement(1850864..1851004) Acidithiobacillus ferrivorans SS3 11042789 YP_004784316.1 CDS Acife_1866 NC_015942.1 1851196 1851390 R KEGG: afr:AFE_3147 cytochrome c oxidase, aa3-type, subunit IV; cytochrome c oxidase, aa3-type subunit IV complement(1851196..1851390) Acidithiobacillus ferrivorans SS3 11044352 YP_004784317.1 CDS Acife_1867 NC_015942.1 1851430 1851984 R KEGG: afr:AFE_3148 cytochrome c oxidase, aa3-type, subunit III; cytochrome c oxidase, aa3-type subunit III complement(1851430..1851984) Acidithiobacillus ferrivorans SS3 11042790 YP_004784318.1 CDS Acife_1868 NC_015942.1 1852003 1853886 R PFAM: Cytochrome c oxidase, subunit I; KEGG: afr:AFE_3149 cytochrome c oxidase, aa3-type, subunit I; cytochrome c oxidase subunit I complement(1852003..1853886) Acidithiobacillus ferrivorans SS3 11042791 YP_004784319.1 CDS Acife_1869 NC_015942.1 1853939 1854703 R PFAM: Cytochrome c oxidase subunit II C-terminal; KEGG: afr:AFE_3150 cytochrome c oxidase, aa3-type, subunit II; cytochrome c oxidase subunit II complement(1853939..1854703) Acidithiobacillus ferrivorans SS3 11042792 YP_004784320.1 CDS Acife_1870 NC_015942.1 1854718 1855269 R KEGG: afr:AFE_3151 hypothetical protein; hypothetical protein complement(1854718..1855269) Acidithiobacillus ferrivorans SS3 11042793 YP_004784321.1 CDS Acife_1871 NC_015942.1 1855377 1856066 R PFAM: Cytochrome c, class I; KEGG: afr:AFE_3152 cytochrome c552; cytochrome c class I complement(1855377..1856066) Acidithiobacillus ferrivorans SS3 11042794 YP_004784322.1 CDS Acife_1872 NC_015942.1 1856078 1857535 R KEGG: afr:AFE_3153 cytochrome c; cytochrome c complement(1856078..1857535) Acidithiobacillus ferrivorans SS3 11042795 YP_004784323.1 CDS Acife_1873 NC_015942.1 1858526 1858909 R PFAM: Protein of unknown function DUF423; KEGG: afr:AFE_0152 hypothetical protein; hypothetical protein complement(1858526..1858909) Acidithiobacillus ferrivorans SS3 11042796 YP_004784324.1 CDS Acife_1874 NC_015942.1 1858966 1859244 R KEGG: afe:Lferr_2718 hypothetical protein; hypothetical protein complement(1858966..1859244) Acidithiobacillus ferrivorans SS3 11044353 YP_004784325.1 CDS Acife_1875 NC_015942.1 1859450 1861924 R KEGG: afe:Lferr_1358 hypothetical protein; HAMAP: UPF0753 protein; PFAM: Protein of unknown function DUF2309; hypothetical protein complement(1859450..1861924) Acidithiobacillus ferrivorans SS3 11042797 YP_004784326.1 CDS Acife_1876 NC_015942.1 1861927 1863573 R PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; KEGG: afr:AFE_1662 NADH dehydrogenase, putative; NADH/Ubiquinone/plastoquinone (complex I) complement(1861927..1863573) Acidithiobacillus ferrivorans SS3 11042798 YP_004784327.1 CDS Acife_1877 NC_015942.1 1864046 1864315 D KEGG: afr:AFE_1669 hypothetical protein; hypothetical protein 1864046..1864315 Acidithiobacillus ferrivorans SS3 11042799 YP_004784328.1 CDS Acife_1878 NC_015942.1 1864382 1865260 D KEGG: afe:Lferr_1367 hypothetical protein; hypothetical protein 1864382..1865260 Acidithiobacillus ferrivorans SS3 11042800 YP_004784329.1 CDS Acife_1879 NC_015942.1 1865317 1865874 D KEGG: afr:AFE_1671 hypothetical protein; hypothetical protein 1865317..1865874 Acidithiobacillus ferrivorans SS3 11042801 YP_004784330.1 CDS Acife_1880 NC_015942.1 1865942 1866979 D TIGRFAM: Dihydroorotase homodimeric type; HAMAP: Dihydroorotase; KEGG: afr:AFE_1672 dihydroorotase; PFAM: Amidohydrolase 1; dihydroorotase 1865942..1866979 Acidithiobacillus ferrivorans SS3 11042802 YP_004784331.1 CDS Acife_1881 NC_015942.1 1867062 1868735 D TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: afe:Lferr_1370 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 1867062..1868735 Acidithiobacillus ferrivorans SS3 11044354 YP_004784332.1 CDS Acife_1883 NC_015942.1 1869252 1869800 D KEGG: afr:AFE_1798 hypothetical protein; hypothetical protein 1869252..1869800 Acidithiobacillus ferrivorans SS3 11044355 YP_004784333.1 CDS Acife_1884 NC_015942.1 1869833 1870105 D KEGG: afr:AFE_1795 hypothetical protein; hypothetical protein 1869833..1870105 Acidithiobacillus ferrivorans SS3 11044356 YP_004784334.1 CDS Acife_1885 NC_015942.1 1870346 1871386 D hypothetical protein 1870346..1871386 Acidithiobacillus ferrivorans SS3 11042804 YP_004784335.1 CDS Acife_1886 NC_015942.1 1871597 1872076 R KEGG: afr:AFE_2014 alkylhydroperoxidase AhpD family core domain protein; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase like protein complement(1871597..1872076) Acidithiobacillus ferrivorans SS3 11044357 YP_004784336.1 CDS Acife_1887 NC_015942.1 1872144 1872611 D KEGG: afe:Lferr_1679 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; MarR family transcriptional regulator 1872144..1872611 Acidithiobacillus ferrivorans SS3 11042805 YP_004784337.1 CDS Acife_1888 NC_015942.1 1873218 1873460 D hypothetical protein 1873218..1873460 Acidithiobacillus ferrivorans SS3 11042806 YP_004784338.1 CDS Acife_1889 NC_015942.1 1873872 1875002 D PFAM: Integrase, catalytic core, phage; KEGG: dds:Ddes_0438 hypothetical protein; integrase family protein 1873872..1875002 Acidithiobacillus ferrivorans SS3 11042807 YP_004784339.1 CDS Acife_1890 NC_015942.1 1874999 1876528 R KEGG: afr:AFE_1719 ParB family protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; ParB domain-containing protein nuclease complement(1874999..1876528) Acidithiobacillus ferrivorans SS3 11042808 YP_004784340.1 CDS Acife_1891 NC_015942.1 1876525 1877343 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: afe:Lferr_1411 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase complement(1876525..1877343) Acidithiobacillus ferrivorans SS3 11042809 YP_004784341.1 CDS Acife_1892 NC_015942.1 1877516 1877986 R KEGG: mei:Msip34_2899 hypothetical protein; hypothetical protein complement(1877516..1877986) Acidithiobacillus ferrivorans SS3 11042810 YP_004784342.1 CDS Acife_1893 NC_015942.1 1878139 1878435 R hypothetical protein complement(1878139..1878435) Acidithiobacillus ferrivorans SS3 11044358 YP_004784343.1 CDS Acife_1894 NC_015942.1 1878440 1879828 R PFAM: Bacterial conjugation TrbI-like protein; KEGG: afe:Lferr_0259 conjugation TrbI family protein; conjugation TrbI family protein complement(1878440..1879828) Acidithiobacillus ferrivorans SS3 11042811 YP_004784344.1 CDS Acife_1895 NC_015942.1 1879830 1880105 R hypothetical protein complement(1879830..1880105) Acidithiobacillus ferrivorans SS3 11044359 YP_004784345.1 CDS Acife_1896 NC_015942.1 1880117 1881295 R PFAM: Conjugal transfer, TrbG/VirB9/CagX; KEGG: afe:Lferr_0257 conjugal transfer protein TrbG/VirB9/CagX; conjugal transfer protein TrbG/VirB9/CagX complement(1880117..1881295) Acidithiobacillus ferrivorans SS3 11044360 YP_004784346.1 CDS Acife_1897 NC_015942.1 1881311 1881976 R KEGG: afr:AFE_1694 conjugal transfer protein; conjugal transfer protein complement(1881311..1881976) Acidithiobacillus ferrivorans SS3 11042812 YP_004784347.1 CDS Acife_1898 NC_015942.1 1882102 1883817 R KEGG: afe:Lferr_0251 P-type conjugative transfer protein TrbL; TIGRFAM: Conjugal transfer, TrbL; PFAM: Conjugal transfer, TrbL/VirB6; P-type conjugative transfer protein TrbL complement(1882102..1883817) Acidithiobacillus ferrivorans SS3 11042813 YP_004784348.1 CDS Acife_1899 NC_015942.1 1883847 1884668 R TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: afr:AFE_1640 conjugal transfer protein TrbJ, putative; P-type conjugative transfer protein TrbJ complement(1883847..1884668) Acidithiobacillus ferrivorans SS3 11042814 YP_004784349.1 CDS Acife_1900 NC_015942.1 1884958 1887363 R TIGRFAM: Outer membrane autotransporter barrel; KEGG: hypothetical protein; outer membrane autotransporter barrel domain-containing protein complement(1884958..1887363) Acidithiobacillus ferrivorans SS3 11042815 YP_004784350.1 CDS Acife_1901 NC_015942.1 1887775 1887999 R hypothetical protein complement(1887775..1887999) Acidithiobacillus ferrivorans SS3 11042816 YP_004784351.1 CDS Acife_1902 NC_015942.1 1888049 1889380 R KEGG: hif:HIBPF05270 trimeric autotransporter adhesin; hypothetical protein complement(1888049..1889380) Acidithiobacillus ferrivorans SS3 11042817 YP_004784352.1 CDS Acife_1903 NC_015942.1 1889421 1889687 R hypothetical protein complement(1889421..1889687) Acidithiobacillus ferrivorans SS3 11044361 YP_004784353.1 CDS Acife_1904 NC_015942.1 1889881 1892433 R KEGG: afe:Lferr_1339 CagE TrbE VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: ATPase, AAA+ type, core; CagE, TrbE, VirB component of type IV transporter system complement(1889881..1892433) Acidithiobacillus ferrivorans SS3 11042818 YP_004784354.1 CDS Acife_1905 NC_015942.1 1892444 1892926 R hypothetical protein complement(1892444..1892926) Acidithiobacillus ferrivorans SS3 11042819 YP_004784355.1 CDS Acife_1906 NC_015942.1 1892948 1893268 R KEGG: gem:GM21_2349 type IV secretory pathway VirB3 family protein; hypothetical protein complement(1892948..1893268) Acidithiobacillus ferrivorans SS3 11044362 YP_004784356.1 CDS Acife_1907 NC_015942.1 1893272 1893673 R PFAM: Conjugal transfer,TrbC; KEGG: cak:Caul_5374 conjugal transfer protein TrbC; conjugal transfer protein TrbC complement(1893272..1893673) Acidithiobacillus ferrivorans SS3 11042820 YP_004784357.1 CDS Acife_1908 NC_015942.1 1893759 1893947 R hypothetical protein complement(1893759..1893947) Acidithiobacillus ferrivorans SS3 11042821 YP_004784358.1 CDS Acife_1909 NC_015942.1 1894294 1895247 R KEGG: afe:Lferr_0244 P-type conjugative transfer ATPase TrbB; TIGRFAM: ATPase, P-type conjugative transfer, TrbB; PFAM: Type II secretion system protein E; P-type conjugative transfer ATPase TrbB complement(1894294..1895247) Acidithiobacillus ferrivorans SS3 11042822 YP_004784359.1 CDS Acife_1910 NC_015942.1 1895355 1895801 R KEGG: afe:Lferr_0238 hypothetical protein; hypothetical protein complement(1895355..1895801) Acidithiobacillus ferrivorans SS3 11042823 YP_004784360.1 CDS Acife_1911 NC_015942.1 1895788 1896045 R hypothetical protein complement(1895788..1896045) Acidithiobacillus ferrivorans SS3 11042824 YP_004784361.1 CDS Acife_1912 NC_015942.1 1896042 1897892 R TIGRFAM: DNA topoisomerase III, bacterial-type; PFAM: DNA topoisomerase, type IA, central; Toprim domain; KEGG: afe:Lferr_0283 DNA topoisomerase III; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; DNA topoisomerase III complement(1896042..1897892) Acidithiobacillus ferrivorans SS3 11042825 YP_004784362.1 CDS Acife_1913 NC_015942.1 1897971 1898351 R hypothetical protein complement(1897971..1898351) Acidithiobacillus ferrivorans SS3 11044363 YP_004784363.1 CDS Acife_1914 NC_015942.1 1898720 1900459 R PFAM: RNA polymerase sigma-70 region 4; sigma-70 region 4 domain-containing protein complement(1898720..1900459) Acidithiobacillus ferrivorans SS3 11042826 YP_004784364.1 CDS Acife_1915 NC_015942.1 1900973 1901773 R KEGG: afr:AFE_0416 pilin, putative; hypothetical protein complement(1900973..1901773) Acidithiobacillus ferrivorans SS3 11044364 YP_004784365.1 CDS Acife_1916 NC_015942.1 1901866 1902156 R hypothetical protein complement(1901866..1902156) Acidithiobacillus ferrivorans SS3 11044365 YP_004784366.1 CDS Acife_1917 NC_015942.1 1902289 1902600 R hypothetical protein complement(1902289..1902600) Acidithiobacillus ferrivorans SS3 11042827 YP_004784367.1 CDS Acife_1918 NC_015942.1 1902921 1903277 R hypothetical protein complement(1902921..1903277) Acidithiobacillus ferrivorans SS3 11042828 YP_004784368.1 CDS Acife_1919 NC_015942.1 1903380 1906070 R KEGG: rcu:RCOM_1784370 DNA polymerase I, putative; PFAM: DNA-directed DNA polymerase, family A, palm domain; SMART: DNA-directed DNA polymerase, family A, palm domain; DNA-directed DNA polymerase complement(1903380..1906070) Acidithiobacillus ferrivorans SS3 11042829 YP_004784369.1 CDS Acife_1920 NC_015942.1 1906311 1909079 R KEGG: bug:BC1001_1781 toprim sub domain-containing protein; hypothetical protein complement(1906311..1909079) Acidithiobacillus ferrivorans SS3 11042830 YP_004784370.1 CDS Acife_1921 NC_015942.1 1909841 1910065 R hypothetical protein complement(1909841..1910065) Acidithiobacillus ferrivorans SS3 11042831 YP_004784371.1 CDS Acife_1922 NC_015942.1 1910239 1910685 D hypothetical protein 1910239..1910685 Acidithiobacillus ferrivorans SS3 11044366 YP_004784372.1 CDS Acife_1923 NC_015942.1 1911276 1911629 R PFAM: PemK-like protein; KEGG: bug:BC1001_3350 PemK family protein; PemK family protein complement(1911276..1911629) Acidithiobacillus ferrivorans SS3 11042832 YP_004784373.1 CDS Acife_1924 NC_015942.1 1911626 1911895 R PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: bug:BC1001_3349 SpoVT/AbrB domain-containing protein; SpoVT/AbrB domain-containing protein complement(1911626..1911895) Acidithiobacillus ferrivorans SS3 11042833 YP_004784374.1 CDS Acife_1925 NC_015942.1 1912225 1912731 R KEGG: pla:Plav_2323 hypothetical protein; hypothetical protein complement(1912225..1912731) Acidithiobacillus ferrivorans SS3 11042834 YP_004784375.1 CDS Acife_1926 NC_015942.1 1912902 1913186 D hypothetical protein 1912902..1913186 Acidithiobacillus ferrivorans SS3 11044367 YP_004784376.1 CDS Acife_1927 NC_015942.1 1913286 1913540 D hypothetical protein 1913286..1913540 Acidithiobacillus ferrivorans SS3 11042835 YP_004784377.1 CDS Acife_1928 NC_015942.1 1913484 1913750 R hypothetical protein complement(1913484..1913750) Acidithiobacillus ferrivorans SS3 11042836 YP_004784378.1 CDS Acife_1929 NC_015942.1 1913855 1914316 D hypothetical protein 1913855..1914316 Acidithiobacillus ferrivorans SS3 11044368 YP_004784379.1 CDS Acife_1930 NC_015942.1 1914363 1915361 R PFAM: Phosphoadenosine phosphosulphate reductase; KEGG: vei:Veis_3757 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase complement(1914363..1915361) Acidithiobacillus ferrivorans SS3 11042837 YP_004784380.1 CDS Acife_1931 NC_015942.1 1915628 1917277 D KEGG: afe:Lferr_0242 type IV secretory pathway VirD2 pilin (relaxase)-like protein; type IV secretory pathway VirD2 pilin (relaxase)-like protein 1915628..1917277 Acidithiobacillus ferrivorans SS3 11042838 YP_004784381.1 CDS Acife_1932 NC_015942.1 1917346 1917723 D hypothetical protein 1917346..1917723 Acidithiobacillus ferrivorans SS3 11044369 YP_004784382.1 CDS Acife_1933 NC_015942.1 1917893 1918186 D hypothetical protein 1917893..1918186 Acidithiobacillus ferrivorans SS3 11042839 YP_004784383.1 CDS Acife_1934 NC_015942.1 1918230 1918595 D PFAM: Rickettsia 17kDa surface antigen; KEGG: afr:AFE_1234 lipoprotein, putative; 17 kDa surface antigen 1918230..1918595 Acidithiobacillus ferrivorans SS3 11042840 YP_004784384.1 CDS Acife_1935 NC_015942.1 1918610 1918771 D hypothetical protein 1918610..1918771 Acidithiobacillus ferrivorans SS3 11042841 YP_004784385.1 CDS Acife_1936 NC_015942.1 1918774 1919244 D KEGG: afe:Lferr_1333 hypothetical protein; hypothetical protein 1918774..1919244 Acidithiobacillus ferrivorans SS3 11042842 YP_004784386.1 CDS Acife_1937 NC_015942.1 1919310 1920626 D hypothetical protein 1919310..1920626 Acidithiobacillus ferrivorans SS3 11042843 YP_004784387.1 CDS Acife_1938 NC_015942.1 1920693 1923122 D PFAM: Domain of unknown function DUF1738; KEGG: afe:Lferr_0235 hypothetical protein; hypothetical protein 1920693..1923122 Acidithiobacillus ferrivorans SS3 11042844 YP_004784388.1 CDS Acife_1939 NC_015942.1 1923125 1924228 D KEGG: sma:SAV_4852 putative oxidoreductase/heat repeat-containing protein; hypothetical protein 1923125..1924228 Acidithiobacillus ferrivorans SS3 11044370 YP_004784389.1 CDS Acife_1940 NC_015942.1 1924225 1925775 D hypothetical protein 1924225..1925775 Acidithiobacillus ferrivorans SS3 11042845 YP_004784390.1 CDS Acife_1941 NC_015942.1 1925874 1926473 D PFAM: Peptidase S26, conserved region; KEGG: afr:AFE_1726 conjugal transfer protein TraF, putative; peptidase S26 1925874..1926473 Acidithiobacillus ferrivorans SS3 11042846 YP_004784391.1 CDS Acife_1942 NC_015942.1 1926470 1927042 D PFAM: Lytic transglycosylase-like, catalytic; KEGG: afr:AFE_1698 conjugal transfer -like protein; lytic transglycosylase 1926470..1927042 Acidithiobacillus ferrivorans SS3 11044371 YP_004784392.1 CDS Acife_1943 NC_015942.1 1927067 1927618 D hypothetical protein 1927067..1927618 Acidithiobacillus ferrivorans SS3 11042847 YP_004784393.1 CDS Acife_1944 NC_015942.1 1927743 1928126 D KEGG: tkm:TK90_2739 hypothetical protein; hypothetical protein 1927743..1928126 Acidithiobacillus ferrivorans SS3 11042848 YP_004784394.1 CDS Acife_1945 NC_015942.1 1928149 1929345 D KEGG: tin:Tint_2014 TraB family protein; TraB family protein 1928149..1929345 Acidithiobacillus ferrivorans SS3 11044372 YP_004784395.1 CDS Acife_1946 NC_015942.1 1929364 1930158 R KEGG: bch:Bcen2424_6894 hypothetical protein; hypothetical protein complement(1929364..1930158) Acidithiobacillus ferrivorans SS3 11042849 YP_004784396.1 CDS Acife_1947 NC_015942.1 1930189 1931313 R KEGG: xau:Xaut_0681 hypothetical protein; hypothetical protein complement(1930189..1931313) Acidithiobacillus ferrivorans SS3 11042850 YP_004784397.1 CDS Acife_1948 NC_015942.1 1931310 1934336 R PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: dly:Dehly_1610 type III site-specific deoxyribonuclease; type III restriction protein res subunit complement(1931310..1934336) Acidithiobacillus ferrivorans SS3 11044373 YP_004784398.1 CDS Acife_1949 NC_015942.1 1934342 1936249 R PFAM: DNA methylase N-4/N-6; KEGG: dly:Dehly_1612 adenine-specific DNA-methyltransferase; DNA methylase N-4/N-6 domain-containing protein complement(1934342..1936249) Acidithiobacillus ferrivorans SS3 11042851 YP_004784399.1 CDS Acife_1950 NC_015942.1 1936331 1937449 R KEGG: slt:Slit_1103 hypothetical protein; hypothetical protein complement(1936331..1937449) Acidithiobacillus ferrivorans SS3 11042852 YP_004784400.1 CDS Acife_1951 NC_015942.1 1937478 1938242 R KEGG: shn:Shewana3_2957 HNH endonuclease; HNH endonuclease complement(1937478..1938242) Acidithiobacillus ferrivorans SS3 11044374 YP_004784401.1 CDS Acife_1952 NC_015942.1 1938260 1938730 R KEGG: cpc:Cpar_0774 hypothetical protein; hypothetical protein complement(1938260..1938730) Acidithiobacillus ferrivorans SS3 11042853 YP_004784402.1 CDS Acife_1953 NC_015942.1 1938731 1941658 R KEGG: msl:Msil_1945 helicase domain protein; PFAM: SNF2-related; TT viral ORF2 protein; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SNF2-like protein complement(1938731..1941658) Acidithiobacillus ferrivorans SS3 11042854 YP_004784403.1 CDS Acife_1954 NC_015942.1 1941691 1942791 R PFAM: GTP-binding protein, HSR1-related; KEGG: gym:GYMC10_6289 small GTP-binding protein; GTP-binding protein HSR1-like protein complement(1941691..1942791) Acidithiobacillus ferrivorans SS3 11044375 YP_004784404.1 CDS Acife_1955 NC_015942.1 1943223 1943762 R hypothetical protein complement(1943223..1943762) Acidithiobacillus ferrivorans SS3 11042855 YP_004784405.1 CDS Acife_1956 NC_015942.1 1943813 1944100 R KEGG: afr:AFE_1070 DNA-binding protein, HU family; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein complement(1943813..1944100) Acidithiobacillus ferrivorans SS3 11042856 YP_004784406.1 CDS Acife_1958 NC_015942.1 1944730 1944870 R hypothetical protein complement(1944730..1944870) Acidithiobacillus ferrivorans SS3 11042857 YP_004784407.1 CDS Acife_1959 NC_015942.1 1944903 1945130 R hypothetical protein complement(1944903..1945130) Acidithiobacillus ferrivorans SS3 11042858 YP_004784408.1 CDS Acife_1960 NC_015942.1 1945279 1945635 R KEGG: afr:AFE_1585 hypothetical protein; hypothetical protein complement(1945279..1945635) Acidithiobacillus ferrivorans SS3 11044377 YP_004784409.1 CDS Acife_1961 NC_015942.1 1945647 1945769 R PFAM: Histone-like bacterial DNA-binding protein; KEGG: afr:AFE_1584 DNA-binding protein HU family protein; histone family protein DNA-binding protein complement(1945647..1945769) Acidithiobacillus ferrivorans SS3 11042859 YP_004784410.1 CDS Acife_1962 NC_015942.1 1945848 1946174 R KEGG: afr:AFE_1070 DNA-binding protein, HU family; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein complement(1945848..1946174) Acidithiobacillus ferrivorans SS3 11042860 YP_004784411.1 CDS Acife_1964 NC_015942.1 1946623 1946901 R PFAM: CopG-like DNA-binding; KEGG: xfa:XF2075 hypothetical protein; CopG family transcriptional regulator complement(1946623..1946901) Acidithiobacillus ferrivorans SS3 11042861 YP_004784412.1 CDS Acife_1965 NC_015942.1 1947258 1948580 R KEGG: apt:APA01_21560 outer membrane protein; hypothetical protein complement(1947258..1948580) Acidithiobacillus ferrivorans SS3 11042862 YP_004784413.1 CDS Acife_1966 NC_015942.1 1948562 1949293 R hypothetical protein complement(1948562..1949293) Acidithiobacillus ferrivorans SS3 11042863 YP_004784414.1 CDS Acife_1967 NC_015942.1 1949290 1949721 R hypothetical protein complement(1949290..1949721) Acidithiobacillus ferrivorans SS3 11042864 YP_004784415.1 CDS Acife_1968 NC_015942.1 1949693 1950151 R hypothetical protein complement(1949693..1950151) Acidithiobacillus ferrivorans SS3 11044379 YP_004784416.1 CDS Acife_1969 NC_015942.1 1950141 1951400 R PFAM: Type II secretion system F domain; KEGG: afr:AFE_0972 type IV pilus biogenesis protein PilC; type II secretion system F domain-containing protein complement(1950141..1951400) Acidithiobacillus ferrivorans SS3 11042865 YP_004784417.1 CDS Acife_1970 NC_015942.1 1951480 1951665 R hypothetical protein complement(1951480..1951665) Acidithiobacillus ferrivorans SS3 11042866 YP_004784418.1 CDS Acife_1971 NC_015942.1 1951847 1953010 R KEGG: afr:AFE_1215 ISAfe8, transposase; TIGRFAM: Transposase, IS605 OrfB, C-terminal; PFAM: Transposase, probable, IS891/IS1136/IS1341; Transposase, IS605 OrfB, C-terminal; transposase, IS605 OrfB family complement(1951847..1953010) Acidithiobacillus ferrivorans SS3 11044380 YP_004784419.1 CDS Acife_1972 NC_015942.1 1953116 1953328 R KEGG: afr:AFE_0418 hypothetical protein; hypothetical protein complement(1953116..1953328) Acidithiobacillus ferrivorans SS3 11042867 YP_004784420.1 CDS Acife_1973 NC_015942.1 1953325 1953942 R hypothetical protein complement(1953325..1953942) Acidithiobacillus ferrivorans SS3 11042868 YP_004784421.1 CDS Acife_1974 NC_015942.1 1953966 1954157 R hypothetical protein complement(1953966..1954157) Acidithiobacillus ferrivorans SS3 11044381 YP_004784422.1 CDS Acife_1975 NC_015942.1 1954173 1954601 R hypothetical protein complement(1954173..1954601) Acidithiobacillus ferrivorans SS3 11042869 YP_004784423.1 CDS Acife_1976 NC_015942.1 1954736 1955350 R KEGG: afr:AFE_0416 pilin, putative; pilin complement(1954736..1955350) Acidithiobacillus ferrivorans SS3 11042870 YP_004784424.1 CDS Acife_1977 NC_015942.1 1955841 1956290 D PFAM: Sel1-like; KEGG: afr:AFE_0409 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 1955841..1956290 Acidithiobacillus ferrivorans SS3 11042871 YP_004784425.1 CDS Acife_1979 NC_015942.1 1956557 1957771 R PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: cph:Cpha266_2270 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein complement(1956557..1957771) Acidithiobacillus ferrivorans SS3 11042873 YP_004784426.1 CDS Acife_1980 NC_015942.1 1958231 1958482 D hypothetical protein 1958231..1958482 Acidithiobacillus ferrivorans SS3 11042874 YP_004784427.1 CDS Acife_1981 NC_015942.1 1958876 1960432 R PFAM: Transposase, IS66; KEGG: eba:ebA859 transposase; transposase IS66 complement(1958876..1960432) Acidithiobacillus ferrivorans SS3 11042875 YP_004784428.1 CDS Acife_1982 NC_015942.1 1960387 1960590 R hypothetical protein complement(1960387..1960590) Acidithiobacillus ferrivorans SS3 11042876 YP_004784429.1 CDS Acife_1983 NC_015942.1 1960580 1960930 R PFAM: Transposase (putative), IS66 Orf2 like; KEGG: eba:ebB23 transpoase helper protein; IS66 Orf2 family protein complement(1960580..1960930) Acidithiobacillus ferrivorans SS3 11044382 YP_004784430.1 CDS Acife_1984 NC_015942.1 1960930 1961292 R KEGG: eba:ebD29 hypothetical protein; hypothetical protein complement(1960930..1961292) Acidithiobacillus ferrivorans SS3 11042877 YP_004784431.1 CDS Acife_1985 NC_015942.1 1961366 1962418 R KEGG: gpb:HDN1F_00180 hypothetical protein; hypothetical protein complement(1961366..1962418) Acidithiobacillus ferrivorans SS3 11042878 YP_004784432.1 CDS Acife_1986 NC_015942.1 1962441 1962896 R SMART: Phospholipid/glycerol acyltransferase; KEGG: afe:Lferr_1301 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(1962441..1962896) Acidithiobacillus ferrivorans SS3 11042879 YP_004784433.1 CDS Acife_1987 NC_015942.1 1962893 1964386 R hypothetical protein complement(1962893..1964386) Acidithiobacillus ferrivorans SS3 11042880 YP_004784434.1 CDS Acife_1988 NC_015942.1 1964405 1965160 R hypothetical protein complement(1964405..1965160) Acidithiobacillus ferrivorans SS3 11042881 YP_004784435.1 CDS Acife_1989 NC_015942.1 1965264 1965551 R hypothetical protein complement(1965264..1965551) Acidithiobacillus ferrivorans SS3 11042882 YP_004784436.1 CDS Acife_1990 NC_015942.1 1965686 1968181 R PFAM: TRAG protein; KEGG: hna:Hneap_1649 TraG family protein; TRAG family protein complement(1965686..1968181) Acidithiobacillus ferrivorans SS3 11042883 YP_004784437.1 CDS Acife_1991 NC_015942.1 1968224 1968586 R KEGG: aav:Aave_0391 hypothetical protein; hypothetical protein complement(1968224..1968586) Acidithiobacillus ferrivorans SS3 11044383 YP_004784438.1 CDS Acife_1992 NC_015942.1 1968868 1969284 R hypothetical protein complement(1968868..1969284) Acidithiobacillus ferrivorans SS3 11042884 YP_004784439.1 CDS Acife_1993 NC_015942.1 1969537 1970214 R KEGG: dds:Ddes_1577 ParB domain protein nuclease; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; ParB domain-containing protein nuclease complement(1969537..1970214) Acidithiobacillus ferrivorans SS3 11042885 YP_004784440.1 CDS Acife_1994 NC_015942.1 1970217 1970639 R hypothetical protein complement(1970217..1970639) Acidithiobacillus ferrivorans SS3 11044384 YP_004784441.1 CDS Acife_1995 NC_015942.1 1970745 1971965 R PFAM: Phosphoadenosine phosphosulphate reductase; KEGG: dds:Ddes_1579 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase complement(1970745..1971965) Acidithiobacillus ferrivorans SS3 11042886 YP_004784442.1 CDS Acife_1996 NC_015942.1 1972078 1973523 R KEGG: aoe:Clos_1290 helicase domain-containing protein; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; helicase domain-containing protein complement(1972078..1973523) Acidithiobacillus ferrivorans SS3 11042887 YP_004784443.1 CDS Acife_1997 NC_015942.1 1973501 1974505 R hypothetical protein complement(1973501..1974505) Acidithiobacillus ferrivorans SS3 11044385 YP_004784444.1 CDS Acife_1998 NC_015942.1 1975162 1975740 D PFAM: NLP/P60; KEGG: afr:AFE_1828 lipoprotein, NLP/P60 family; NLP/P60 protein 1975162..1975740 Acidithiobacillus ferrivorans SS3 11042889 YP_004784445.1 CDS Acife_1999 NC_015942.1 1975780 1976946 D KEGG: afr:AFE_1827 membrane-bound lytic murein transglycosylase B, putative; membrane-bound lytic murein transglycosylase B 1975780..1976946 Acidithiobacillus ferrivorans SS3 11042890 YP_004784446.1 CDS Acife_2000 NC_015942.1 1977043 1978389 D KEGG: afr:AFE_1826 amidohydrolase family protein; HAMAP: 5-methylthioadenosine/S-adenosylhomocysteine deaminase; PFAM: Amidohydrolase 1; 5-methylthioadenosine/S-adenosylhomocysteine deaminase 1977043..1978389 Acidithiobacillus ferrivorans SS3 11042891 YP_004784447.1 CDS Acife_2001 NC_015942.1 1978386 1979093 D TIGRFAM: Ubiquinone biosynthesis O-methyltransferase; HAMAP: 3-demethylubiquinone-9 3-methyltransferase; KEGG: afr:AFE_1825 3-demethylubiquinone-9 3-methyltransferase; PFAM: Methyltransferase type 11; 3-demethylubiquinone-9 3-methyltransferase 1978386..1979093 Acidithiobacillus ferrivorans SS3 11042892 YP_004784448.1 CDS Acife_2002 NC_015942.1 1979065 1979760 D KEGG: afr:AFE_1823 phosphoglycolate phosphatase; TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; phosphoglycolate phosphatase 1979065..1979760 Acidithiobacillus ferrivorans SS3 11042893 YP_004784449.1 CDS Acife_2003 NC_015942.1 1979722 1980780 R PFAM: Protein of unknown function DUF6, transmembrane; KEGG: afr:AFE_1824 hypothetical protein; hypothetical protein complement(1979722..1980780) Acidithiobacillus ferrivorans SS3 11042894 YP_004784450.1 CDS Acife_2004 NC_015942.1 1980827 1982023 D KEGG: afr:AFE_1821 aminotransferase, classes I and II; TIGRFAM: Succinyldiaminopimelate transaminase, beta/gammaproteobacteria; PFAM: Aminotransferase, class I/II; succinyldiaminopimelate transaminase 1980827..1982023 Acidithiobacillus ferrivorans SS3 11042895 YP_004784451.1 CDS Acife_2005 NC_015942.1 1982047 1982871 D TIGRFAM: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; HAMAP: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; KEGG: afr:AFE_1820 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; PFAM: Bacterial transferase hexapeptide repeat; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 1982047..1982871 Acidithiobacillus ferrivorans SS3 11044386 YP_004784452.1 CDS Acife_2006 NC_015942.1 1982884 1984032 D TIGRFAM: Succinyl-diaminopimelate desuccinylase, proteobacteria; HAMAP: Succinyl-diaminopimelate desuccinylase, proteobacteria; KEGG: afr:AFE_1819 succinyl-diaminopimelate desuccinylase; PFAM: Peptidase M20; Peptidase M20, dimerisation; succinyl-diaminopimelate desuccinylase 1982884..1984032 Acidithiobacillus ferrivorans SS3 11042896 YP_004784453.1 CDS Acife_2007 NC_015942.1 1984022 1984846 D KEGG: afr:AFE_1818 rare lipoprotein A, putative; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A; Sporulation/cell division region, bacteria; rare lipoprotein A 1984022..1984846 Acidithiobacillus ferrivorans SS3 11042897 YP_004784454.1 CDS Acife_2008 NC_015942.1 1984859 1985821 D PFAM: Sulfotransferase; KEGG: afr:AFE_1817 sulfotransferase domain protein; sulfotransferase 1984859..1985821 Acidithiobacillus ferrivorans SS3 11042898 YP_004784455.1 CDS Acife_2009 NC_015942.1 1985919 1988330 D KEGG: afr:AFE_1816 phosphoenolpyruvate synthase; TIGRFAM: Phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; PEP-utilising enzyme; phosphoenolpyruvate synthase 1985919..1988330 Acidithiobacillus ferrivorans SS3 11042899 YP_004784456.1 CDS Acife_2010 NC_015942.1 1988327 1989850 D TIGRFAM: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; HAMAP: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: afr:AFE_1815 phosphoglyceromutase; PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1988327..1989850 Acidithiobacillus ferrivorans SS3 11044387 YP_004784457.1 CDS Acife_2011 NC_015942.1 1989895 1990869 D PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; KEGG: afr:AFE_1811 2-oxo acid dehydrogenase, acyltransferase, putative; hypothetical protein 1989895..1990869 Acidithiobacillus ferrivorans SS3 11044388 YP_004784458.1 CDS Acife_2012 NC_015942.1 1990866 1992056 D TIGRFAM: Acetate kinase; HAMAP: Acetate kinase; KEGG: afr:AFE_1810 acetate kinase; PFAM: Acetate/butyrate kinase; acetate kinase 1990866..1992056 Acidithiobacillus ferrivorans SS3 11042900 YP_004784459.1 CDS Acife_2013 NC_015942.1 1992053 1993546 D PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_1809 major facilitator family protein; major facilitator superfamily protein 1992053..1993546 Acidithiobacillus ferrivorans SS3 11044389 YP_004784460.1 CDS Acife_2014 NC_015942.1 1993571 1994494 D PFAM: Phosphate acetyl/butaryl transferase; KEGG: afr:AFE_1808 phosphate acetyl/butyryl transferase; phosphate acetyl/butaryl transferase 1993571..1994494 Acidithiobacillus ferrivorans SS3 11042901 YP_004784461.1 CDS Acife_2015 NC_015942.1 1994491 1995450 D KEGG: afr:AFE_1807 carbohydrate kinase, PfkB family; TIGRFAM: 1-phosphofructokinase; PFAM: Carbohydrate/purine kinase; 1-phosphofructokinase 1994491..1995450 Acidithiobacillus ferrivorans SS3 11042902 YP_004784462.1 CDS Acife_2016 NC_015942.1 1995576 1996025 R KEGG: afe:Lferr_1481 hypothetical protein; hypothetical protein complement(1995576..1996025) Acidithiobacillus ferrivorans SS3 11042903 YP_004784463.1 CDS Acife_2017 NC_015942.1 1996516 1997913 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: afr:AFE_1803 pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1996516..1997913 Acidithiobacillus ferrivorans SS3 11044390 YP_004784464.1 CDS Acife_2018 NC_015942.1 1997906 1998826 D PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: afr:AFE_1802 aldolase; deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase 1997906..1998826 Acidithiobacillus ferrivorans SS3 11042904 YP_004784465.1 CDS Acife_2019 NC_015942.1 1998823 1999131 D PFAM: Pyruvate kinase, barrel; Enolase, C-terminal; KEGG: afe:Lferr_1478 pyruvate kinase; pyruvate kinase 1998823..1999131 Acidithiobacillus ferrivorans SS3 11042905 YP_004784466.1 CDS Acife_2020 NC_015942.1 1999145 2001670 D KEGG: afr:AFE_1799 alpha-glucan phosphorylase family protein; TIGRFAM: Alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35; alpha-glucan phosphorylase 1999145..2001670 Acidithiobacillus ferrivorans SS3 11042906 YP_004784467.1 CDS Acife_2021 NC_015942.1 2001683 2002240 D KEGG: afr:AFE_1798 hypothetical protein; hypothetical protein 2001683..2002240 Acidithiobacillus ferrivorans SS3 11042907 YP_004784468.1 CDS Acife_2022 NC_015942.1 2002332 2002988 D PFAM: Phosphoribosyltransferase; KEGG: afr:AFE_3103 phosphoribosyl transferase domain protein; phosphoribosyltransferase 2002332..2002988 Acidithiobacillus ferrivorans SS3 11042908 YP_004784469.1 CDS Acife_2023 NC_015942.1 2002998 2003300 D hypothetical protein 2002998..2003300 Acidithiobacillus ferrivorans SS3 11042909 YP_004784470.1 CDS Acife_2024 NC_015942.1 2003331 2003684 R KEGG: afr:AFE_2085 hypothetical protein; hypothetical protein complement(2003331..2003684) Acidithiobacillus ferrivorans SS3 11044391 YP_004784471.1 CDS Acife_2025 NC_015942.1 2003790 2004050 D PFAM: Transglycosylase-associated protein; KEGG: afe:Lferr_1472 transglycosylase-associated protein; transglycosylase-associated protein 2003790..2004050 Acidithiobacillus ferrivorans SS3 11042910 YP_004784472.1 CDS Acife_2026 NC_015942.1 2004068 2004769 R KEGG: afr:AFE_1794 base excision repair protein, HhH-GPD family; PFAM: HhH-GPD domain; SMART: HhH-GPD domain; HhH-GPD family protein complement(2004068..2004769) Acidithiobacillus ferrivorans SS3 11044392 YP_004784473.1 CDS Acife_2027 NC_015942.1 2004779 2005654 R TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: afr:AFE_1793 ribosomal large subunit pseudouridine synthase B; SMART: RNA-binding S4; pseudouridine synthase Rsu complement(2004779..2005654) Acidithiobacillus ferrivorans SS3 11044393 YP_004784474.1 CDS Acife_2028 NC_015942.1 2005781 2007085 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afr:AFE_1792 sulfide-quinone reductase, putative; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2005781..2007085) Acidithiobacillus ferrivorans SS3 11042911 YP_004784475.1 CDS Acife_2029 NC_015942.1 2007276 2007779 R PFAM: Chromosome segregation/condensation protein ScpB, prokaryote; KEGG: afr:AFE_1791 segregation and condensation protein B; chromosome segregation and condensation protein ScpB complement(2007276..2007779) Acidithiobacillus ferrivorans SS3 11042912 YP_004784476.1 CDS Acife_2030 NC_015942.1 2007772 2008611 R KEGG: afr:AFE_1790 segregation and condensation protein A; manually curated; PFAM: Prokaryotic chromosome segregation/condensation protein ScpA; chromosome segregation and condensation protein ScpA complement(2007772..2008611) Acidithiobacillus ferrivorans SS3 11042913 YP_004784477.1 CDS Acife_2031 NC_015942.1 2008592 2009803 R KEGG: afr:AFE_1789 tryptophanyl-tRNA synthetase; TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; PFAM: Aminoacyl-tRNA synthetase, class Ib; tryptophanyl-tRNA synthetase complement(2008592..2009803) Acidithiobacillus ferrivorans SS3 11042914 YP_004784478.1 CDS Acife_2032 NC_015942.1 2009803 2010462 R PFAM: Peptidase M50; KEGG: afr:AFE_1788 membrane-associated zinc metalloprotease, putative; peptidase M50 complement(2009803..2010462) Acidithiobacillus ferrivorans SS3 11042915 YP_004784479.1 CDS Acife_2033 NC_015942.1 2010496 2011149 R KEGG: afr:AFE_1787 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; Sua5/YciO/YrdC/YwlC family protein complement(2010496..2011149) Acidithiobacillus ferrivorans SS3 11044394 YP_004784480.1 CDS Acife_2034 NC_015942.1 2011392 2012216 D KEGG: afr:AFE_1786 hypothetical protein; hypothetical protein 2011392..2012216 Acidithiobacillus ferrivorans SS3 11042916 YP_004784481.1 CDS Acife_2035 NC_015942.1 2012255 2012533 R KEGG: bgf:BC1003_1824 putative signal peptide protein; hypothetical protein complement(2012255..2012533) Acidithiobacillus ferrivorans SS3 11042917 YP_004784482.1 CDS Acife_2036 NC_015942.1 2012593 2012874 R KEGG: afr:AFE_1785 hypothetical protein; hypothetical protein complement(2012593..2012874) Acidithiobacillus ferrivorans SS3 11042918 YP_004784483.1 CDS Acife_2037 NC_015942.1 2013266 2015617 D PFAM: Mechanosensitive ion channel MscS; KEGG: afr:AFE_1784 mechanosensitive ion channel family protein; mechanosensitive ion channel MscS 2013266..2015617 Acidithiobacillus ferrivorans SS3 11042919 YP_004784484.1 CDS Acife_2038 NC_015942.1 2015577 2016770 R SMART: Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: Glutamate 5-kinase, ProB-related; KEGG: afe:Lferr_1460 glutamate 5-kinase; HAMAP: Glutamate 5-kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; glutamate 5-kinase complement(2015577..2016770) Acidithiobacillus ferrivorans SS3 11042920 YP_004784485.1 CDS Acife_2039 NC_015942.1 2017022 2018566 R TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; HAMAP: GMP synthase [glutamine-hydrolyzing]; KEGG: afr:AFE_1778 GMP synthase; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; tRNA methyl transferase-like; NAD+ synthase; GMP synthase complement(2017022..2018566) Acidithiobacillus ferrivorans SS3 11042921 YP_004784486.1 CDS Acife_2040 NC_015942.1 2018570 2020030 R TIGRFAM: IMP dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; KEGG: afr:AFE_1777 inosine-5'-monophosphate dehydrogenase; SMART: Cystathionine beta-synthase, core; inosine-5'-monophosphate dehydrogenase complement(2018570..2020030) Acidithiobacillus ferrivorans SS3 11044395 YP_004784487.1 CDS Acife_2041 NC_015942.1 2020205 2021188 D PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_1776 glycosyl transferase; family 2 glycosyl transferase 2020205..2021188 Acidithiobacillus ferrivorans SS3 11042922 YP_004784488.1 CDS Acife_2042 NC_015942.1 2021330 2022826 D KEGG: afe:Lferr_1451 poly(A) polymerase; TIGRFAM: Poly(A) polymerase, PcnB; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 2021330..2022826 Acidithiobacillus ferrivorans SS3 11042923 YP_004784489.1 CDS Acife_2043 NC_015942.1 2022846 2024195 D KEGG: afr:AFE_1774 polyA polymerase family protein; manually curated; PFAM: Polynucleotide adenylyltransferase region; polynucleotide adenylyltransferase protein 2022846..2024195 Acidithiobacillus ferrivorans SS3 11042924 YP_004784490.1 CDS Acife_2044 NC_015942.1 2024153 2024722 D KEGG: afe:Lferr_1449 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2024153..2024722 Acidithiobacillus ferrivorans SS3 11042925 YP_004784491.1 CDS Acife_2045 NC_015942.1 2024719 2025333 D PFAM: Deoxynucleoside kinase; KEGG: afr:AFE_1772 deoxyguanosine kinase/deoxyadenosine kinase, putative; deoxynucleoside kinase 2024719..2025333 Acidithiobacillus ferrivorans SS3 11042926 YP_004784492.1 CDS Acife_2046 NC_015942.1 2025326 2026111 D TIGRFAM: Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; KEGG: afr:AFE_1771 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2025326..2026111 Acidithiobacillus ferrivorans SS3 11044396 YP_004784493.1 CDS Acife_2047 NC_015942.1 2026083 2026952 D TIGRFAM: Pantoate-beta-alanine ligase; HAMAP: Pantoate-beta-alanine ligase; KEGG: afr:AFE_1770 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantothenate synthetase 2026083..2026952 Acidithiobacillus ferrivorans SS3 11042927 YP_004784494.1 CDS Acife_2048 NC_015942.1 2026949 2030782 D PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; Cysteine-rich region, CCG; KEGG: afr:AFE_1769 oxidoreductase, FAD-binding, putative; FAD linked oxidase domain-containing protein 2026949..2030782 Acidithiobacillus ferrivorans SS3 11042928 YP_004784495.1 CDS Acife_2049 NC_015942.1 2030782 2031471 D PFAM: Protein of unknown function DUF1275; KEGG: nha:Nham_4228 hypothetical protein; hypothetical protein 2030782..2031471 Acidithiobacillus ferrivorans SS3 11042929 YP_004784496.1 CDS Acife_2050 NC_015942.1 2031487 2031888 D KEGG: afe:Lferr_1444 Smr protein/MutS2; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal; Smr protein/MutS2 2031487..2031888 Acidithiobacillus ferrivorans SS3 11042930 YP_004784497.1 CDS Acife_2051 NC_015942.1 2031897 2032523 D PFAM: Class II aldolase/adducin, N-terminal; KEGG: afr:AFE_1766 hypothetical protein; class II aldolase/adducin family protein 2031897..2032523 Acidithiobacillus ferrivorans SS3 11042931 YP_004784498.1 CDS Acife_2052 NC_015942.1 2032496 2033158 R KEGG: afr:AFE_1767 exodeoxyribonuclease X, putative; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; exonuclease RNase T and DNA polymerase III complement(2032496..2033158) Acidithiobacillus ferrivorans SS3 11044397 YP_004784499.1 CDS Acife_2053 NC_015942.1 2033390 2034088 D PFAM: Uncharacterised protein family UPF0005; KEGG: afr:AFE_1764 hypothetical protein; hypothetical protein 2033390..2034088 Acidithiobacillus ferrivorans SS3 11042932 YP_004784500.1 CDS Acife_2054 NC_015942.1 2034206 2036746 D SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; TIGRFAM: DNA mismatch repair protein MutS, type 1; KEGG: afr:AFE_1760 DNA mismatch repair protein MutS; HAMAP: DNA mismatch repair protein MutS, type 1; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp; DNA mismatch repair protein mutS 2034206..2036746 Acidithiobacillus ferrivorans SS3 11044398 YP_004784501.1 CDS Acife_2055 NC_015942.1 2036815 2036967 D hypothetical protein 2036815..2036967 Acidithiobacillus ferrivorans SS3 11044399 YP_004784502.1 CDS Acife_2056 NC_015942.1 2036948 2037478 D PFAM: SNARE associated Golgi protein; KEGG: afr:AFE_1136 membrane protein, DedA family; hypothetical protein 2036948..2037478 Acidithiobacillus ferrivorans SS3 11042933 YP_004784503.1 CDS Acife_2057 NC_015942.1 2037538 2037732 D hypothetical protein 2037538..2037732 Acidithiobacillus ferrivorans SS3 11044400 YP_004784504.1 CDS Acife_2058 NC_015942.1 2037719 2038435 D PFAM: Protein of unknown function DUF2506; KEGG: pla:Plav_1236 hypothetical protein; hypothetical protein 2037719..2038435 Acidithiobacillus ferrivorans SS3 11042934 YP_004784505.1 CDS Acife_2059 NC_015942.1 2038479 2038748 R KEGG: pol:Bpro_0451 CopG family protein; CopG family protein complement(2038479..2038748) Acidithiobacillus ferrivorans SS3 11042935 YP_004784506.1 CDS Acife_2060 NC_015942.1 2038985 2039209 D KEGG: afr:AFE_0867 hypothetical protein; hypothetical protein 2038985..2039209 Acidithiobacillus ferrivorans SS3 11042936 YP_004784507.1 CDS Acife_2061 NC_015942.1 2039272 2039541 D KEGG: afr:AFE_0865 hypothetical protein; hypothetical protein 2039272..2039541 Acidithiobacillus ferrivorans SS3 11042937 YP_004784508.1 CDS Acife_2062 NC_015942.1 2039538 2040461 R PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_0866 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2039538..2040461) Acidithiobacillus ferrivorans SS3 11042938 YP_004784509.1 CDS Acife_2063 NC_015942.1 2040555 2042111 D KEGG: afr:AFE_0864 drug resistance transporter, EmrB/QacA family; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1; EmrB/QacA subfamily drug resistance transporter 2040555..2042111 Acidithiobacillus ferrivorans SS3 11042939 YP_004784510.1 CDS Acife_2064 NC_015942.1 2042111 2043544 D KEGG: afr:AFE_0863 RND efflux system, drug efflux transporter, outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 2042111..2043544 Acidithiobacillus ferrivorans SS3 11044401 YP_004784511.1 CDS Acife_2065 NC_015942.1 2043541 2044737 D PFAM: Secretion protein HlyD; KEGG: afe:Lferr_0986 secretion protein HlyD family protein; secretion protein HlyD family protein 2043541..2044737 Acidithiobacillus ferrivorans SS3 11042940 YP_004784512.1 CDS Acife_2066 NC_015942.1 2044837 2045298 D PFAM: Globin, subset; KEGG: afr:AFE_0861 globin domain protein; globin 2044837..2045298 Acidithiobacillus ferrivorans SS3 11042941 YP_004784513.1 CDS Acife_2067 NC_015942.1 2045362 2046345 D PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; Ferredoxin; KEGG: afr:AFE_0860 iron-sulfur cluster-binding protein/oxidoreductase, FAD/NAD-binding; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2045362..2046345 Acidithiobacillus ferrivorans SS3 11042942 YP_004784514.1 CDS Acife_2068 NC_015942.1 2046364 2046609 R KEGG: afr:AFE_2867 thioredoxin family protein; thioredoxin family protein complement(2046364..2046609) Acidithiobacillus ferrivorans SS3 11042943 YP_004784515.1 CDS Acife_2069 NC_015942.1 2046716 2047174 D PFAM: Haemerythrin/HHE cation-binding motif; KEGG: afr:AFE_2868 hypothetical protein; Hemerythrin HHE cation binding domain-containing protein 2046716..2047174 Acidithiobacillus ferrivorans SS3 11042944 YP_004784516.1 CDS Acife_2070 NC_015942.1 2047171 2047617 D KEGG: afr:AFE_2869 glycine cleavage system H protein, putative; HAMAP: Glycine cleavage H-protein; PFAM: Glycine cleavage H-protein; glycine cleavage system H protein 2047171..2047617 Acidithiobacillus ferrivorans SS3 11044402 YP_004784517.1 CDS Acife_2071 NC_015942.1 2047807 2048220 D PFAM: Protein of unknown function DUF488; KEGG: afe:Lferr_0982 hypothetical protein; hypothetical protein 2047807..2048220 Acidithiobacillus ferrivorans SS3 11042945 YP_004784518.1 CDS Acife_2072 NC_015942.1 2048250 2049017 R KEGG: afe:Lferr_0981 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; Crp/Fnr family transcriptional regulator complement(2048250..2049017) Acidithiobacillus ferrivorans SS3 11042946 YP_004784519.1 CDS Acife_2073 NC_015942.1 2049284 2050447 D KEGG: mca:MCA0589 nitrate transporter, putative; nitrate transporter 2049284..2050447 Acidithiobacillus ferrivorans SS3 11042947 YP_004784520.1 CDS Acife_2074 NC_015942.1 2050736 2052139 D PFAM: Major facilitator superfamily MFS-1; KEGG: bph:Bphy_2337 major facilitator transporter; major facilitator superfamily protein 2050736..2052139 Acidithiobacillus ferrivorans SS3 11042948 YP_004784521.1 CDS Acife_2075 NC_015942.1 2052261 2053499 D KEGG: rmr:Rmar_1225 hypothetical protein; hypothetical protein 2052261..2053499 Acidithiobacillus ferrivorans SS3 11042949 YP_004784522.1 CDS Acife_2076 NC_015942.1 2053739 2056192 D KEGG: bpr:GBP346_A0485 nitrite reductase [NAD(P)H], large subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; PFAM: Nitrite/sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; nitrite reductase (NAD(P)H) large subunit 2053739..2056192 Acidithiobacillus ferrivorans SS3 11044403 YP_004784523.1 CDS Acife_2077 NC_015942.1 2056203 2056523 D KEGG: hdn:Hden_2952 nitrite reductase (NAD(P)H), small subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD; PFAM: Rieske [2Fe-2S] iron-sulphur domain; nitrite reductase (NAD(P)H) small subunit 2056203..2056523 Acidithiobacillus ferrivorans SS3 11042950 YP_004784524.1 CDS Acife_2078 NC_015942.1 2056520 2059306 D PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; BFD-like [2Fe-2S]-binding region; KEGG: mei:Msip34_0344 molybdopterin oxidoreductase; molybdopterin oxidoreductase 2056520..2059306 Acidithiobacillus ferrivorans SS3 11044404 YP_004784525.1 CDS Acife_2079 NC_015942.1 2059303 2060334 D PFAM: Glycosyl transferase, family 3, N-terminal; KEGG: dar:Daro_0815 glycosyl transferase family protein; glycosyl transferase family protein 2059303..2060334 Acidithiobacillus ferrivorans SS3 11044405 YP_004784526.1 CDS Acife_2080 NC_015942.1 2060349 2061134 D KEGG: afr:AFE_3126 uroporphyrin-III C-methyltransferase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; PFAM: Tetrapyrrole methylase; uroporphyrin-III C-methyltransferase 2060349..2061134 Acidithiobacillus ferrivorans SS3 11042951 YP_004784527.1 CDS Acife_2081 NC_015942.1 2061144 2061500 D PFAM: Cobalamin (vitamin B12) biosynthesis CbiX; KEGG: afr:AFE_3127 hypothetical protein; cobalamin (vitamin B12) biosynthesis CbiX protein 2061144..2061500 Acidithiobacillus ferrivorans SS3 11042952 YP_004784528.1 CDS Acife_2082 NC_015942.1 2061505 2062071 D KEGG: dar:Daro_0829 response regulator receiver:ANTAR; PFAM: ANTAR; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; response regulator receiver and ANTAR domain-containing protein 2061505..2062071 Acidithiobacillus ferrivorans SS3 11044406 YP_004784529.1 CDS Acife_2083 NC_015942.1 2062481 2062753 D PFAM: Protein of unknown function DUF1778; KEGG: afr:AFE_1418 hypothetical protein; hypothetical protein 2062481..2062753 Acidithiobacillus ferrivorans SS3 11044407 YP_004784530.1 CDS Acife_2084 NC_015942.1 2062750 2063244 D PFAM: GCN5-related N-acetyltransferase; KEGG: afr:AFE_1417 acetyltransferase, GNAT family; GCN5-like N-acetyltransferase 2062750..2063244 Acidithiobacillus ferrivorans SS3 11044408 YP_004784531.1 CDS Acife_2085 NC_015942.1 2063363 2063932 R KEGG: afr:AFE_1851 glycosyl transferase, group 2 family protein; hypothetical protein complement(2063363..2063932) Acidithiobacillus ferrivorans SS3 11042953 YP_004784532.1 CDS Acife_2087 NC_015942.1 2064507 2065844 R KEGG: afe:Lferr_1434 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase complement(2064507..2065844) Acidithiobacillus ferrivorans SS3 11042954 YP_004784533.1 CDS Acife_2088 NC_015942.1 2066075 2067745 R TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: tsa:AciPR4_2084 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase complement(2066075..2067745) Acidithiobacillus ferrivorans SS3 11042955 YP_004784534.1 CDS Acife_2089 NC_015942.1 2067742 2069223 R KEGG: har:HEAR0296 protein kinase; putative circadian clock protein, KaiC complement(2067742..2069223) Acidithiobacillus ferrivorans SS3 11044410 YP_004784535.1 CDS Acife_2090 NC_015942.1 2069228 2069584 R manually curated; hypothetical protein complement(2069228..2069584) Acidithiobacillus ferrivorans SS3 11042956 YP_004784536.1 CDS Acife_2091 NC_015942.1 2069637 2069951 R KEGG: afr:AFE_2653 hypothetical protein; hypothetical protein complement(2069637..2069951) Acidithiobacillus ferrivorans SS3 11042957 YP_004784537.1 CDS Acife_2092 NC_015942.1 2070025 2070486 R hypothetical protein complement(2070025..2070486) Acidithiobacillus ferrivorans SS3 11042958 YP_004784538.1 CDS Acife_2093 NC_015942.1 2070483 2070584 R hypothetical protein complement(2070483..2070584) Acidithiobacillus ferrivorans SS3 11042959 YP_004784539.1 CDS Acife_2094 NC_015942.1 2071120 2071587 D manually curated; KEGG: sfr:Sfri_2035 hypothetical protein; hypothetical protein 2071120..2071587 Acidithiobacillus ferrivorans SS3 11042960 YP_004784540.1 CDS Acife_2095 NC_015942.1 2071606 2072391 R PFAM: Major intrinsic protein; KEGG: cte:CT1472 major intrinsic protein; major intrinsic protein complement(2071606..2072391) Acidithiobacillus ferrivorans SS3 11044411 YP_004784541.1 CDS Acife_2096 NC_015942.1 2072407 2072766 R KEGG: xac:XACa0008 hypothetical protein; hypothetical protein complement(2072407..2072766) Acidithiobacillus ferrivorans SS3 11042961 YP_004784542.1 CDS Acife_2097 NC_015942.1 2072868 2073026 D hypothetical protein 2072868..2073026 Acidithiobacillus ferrivorans SS3 11042962 YP_004784543.1 CDS Acife_2098 NC_015942.1 2073286 2073441 R manually curated; KEGG: azl:AZL_021040 hypothetical protein; hypothetical protein complement(2073286..2073441) Acidithiobacillus ferrivorans SS3 11044412 YP_004784544.1 CDS Acife_2099 NC_015942.1 2073482 2074096 R PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: chy:CHY_0237 putative undecaprenyl diphosphate synthase; Di-trans-poly-cis-decaprenylcistransferase complement(2073482..2074096) Acidithiobacillus ferrivorans SS3 11042963 YP_004784545.1 CDS Acife_2100 NC_015942.1 2074695 2075030 D hypothetical protein 2074695..2075030 Acidithiobacillus ferrivorans SS3 11042964 YP_004784546.1 CDS Acife_2101 NC_015942.1 2075165 2075344 D KEGG: afr:AFE_1624 hypothetical protein; hypothetical protein 2075165..2075344 Acidithiobacillus ferrivorans SS3 11044413 YP_004784547.1 CDS Acife_2102 NC_015942.1 2075415 2075585 D PFAM: CsbD-like; KEGG: nmu:Nmul_A1602 CsbD-like; CsbD family protein 2075415..2075585 Acidithiobacillus ferrivorans SS3 11042965 YP_004784548.1 CDS Acife_2103 NC_015942.1 2075608 2076066 D PFAM: PRC-barrel; KEGG: alv:Alvin_0926 PRC-barrel domain-containing protein; PRC-barrel domain-containing protein 2075608..2076066 Acidithiobacillus ferrivorans SS3 11044414 YP_004784549.1 CDS Acife_2104 NC_015942.1 2076546 2076791 D hypothetical protein 2076546..2076791 Acidithiobacillus ferrivorans SS3 11042966 YP_004784550.1 CDS Acife_2105 NC_015942.1 2076842 2077132 D KEGG: afe:Lferr_2071 hypothetical protein; hypothetical protein 2076842..2077132 Acidithiobacillus ferrivorans SS3 11042967 YP_004784551.1 CDS Acife_2106 NC_015942.1 2077208 2077603 D KEGG: pct:PC1_0454 transport-associated protein; PFAM: Transport-associated; SMART: Transport-associated and nodulation region, bacteria; transport-associated protein 2077208..2077603 Acidithiobacillus ferrivorans SS3 11042968 YP_004784552.1 CDS Acife_2107 NC_015942.1 2077659 2078063 D PFAM: PRC-barrel; KEGG: afr:AFE_0361 hypothetical protein; PRC-barrel domain-containing protein 2077659..2078063 Acidithiobacillus ferrivorans SS3 11044415 YP_004784553.1 CDS Acife_2108 NC_015942.1 2078088 2078444 D KEGG: afr:AFE_0362 hypothetical protein; hypothetical protein 2078088..2078444 Acidithiobacillus ferrivorans SS3 11042969 YP_004784554.1 CDS Acife_2109 NC_015942.1 2078927 2079379 R KEGG: afr:AFE_2653 hypothetical protein; hypothetical protein complement(2078927..2079379) Acidithiobacillus ferrivorans SS3 11042970 YP_004784555.1 CDS Acife_2110 NC_015942.1 2079560 2080084 D PFAM: SNARE associated Golgi protein; KEGG: afr:AFE_1136 membrane protein, DedA family; hypothetical protein 2079560..2080084 Acidithiobacillus ferrivorans SS3 11042971 YP_004784556.1 CDS Acife_2113 NC_015942.1 2081180 2081653 R KEGG: afr:AFE_0831 hypothetical protein; hypothetical protein complement(2081180..2081653) Acidithiobacillus ferrivorans SS3 11042973 YP_004784557.1 CDS Acife_2114 NC_015942.1 2081837 2082013 R hypothetical protein complement(2081837..2082013) Acidithiobacillus ferrivorans SS3 11042974 YP_004784558.1 CDS Acife_2115 NC_015942.1 2082035 2082391 R KEGG: lch:Lcho_2219 hypothetical protein; hypothetical protein complement(2082035..2082391) Acidithiobacillus ferrivorans SS3 11044417 YP_004784559.1 CDS Acife_2116 NC_015942.1 2082373 2082672 R KEGG: mea:Mex_1p1482 hypothetical protein; hypothetical protein complement(2082373..2082672) Acidithiobacillus ferrivorans SS3 11042975 YP_004784560.1 CDS Acife_2118 NC_015942.1 2083451 2085160 R KEGG: afo:Afer_0254 chloride channel core; manually curated; PFAM: Chloride channel, voltage gated; Cl- channel voltage-gated family protein complement(2083451..2085160) Acidithiobacillus ferrivorans SS3 11042977 YP_004784561.1 CDS Acife_2119 NC_015942.1 2085492 2085773 R TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; KEGG: csa:Csal_2342 XRE family plasmid maintenance system antidote protein; SMART: Helix-turn-helix type 3; XRE family transcriptional regulator complement(2085492..2085773) Acidithiobacillus ferrivorans SS3 11042978 YP_004784562.1 CDS Acife_2121 NC_015942.1 2086046 2086735 R PFAM: Pirin, N-terminal; KEGG: mfa:Mfla_1833 pirin-like protein; Pirin domain-containing protein complement(2086046..2086735) Acidithiobacillus ferrivorans SS3 11042980 YP_004784563.1 CDS Acife_2122 NC_015942.1 2086983 2087528 D PFAM: Lytic transglycosylase-like, catalytic; KEGG: afr:AFE_1007 transglycosylase, putative; lytic transglycosylase 2086983..2087528 Acidithiobacillus ferrivorans SS3 11042981 YP_004784564.1 CDS Acife_2123 NC_015942.1 2087552 2088076 R hypothetical protein complement(2087552..2088076) Acidithiobacillus ferrivorans SS3 11042982 YP_004784565.1 CDS Acife_2124 NC_015942.1 2088261 2090666 R TIGRFAM: DNA topoisomerase IV, subunit A, Gram-negative; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; KEGG: afr:AFE_2028 DNA topoisomerase IV subunit A; SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA topoisomerase IV subunit A complement(2088261..2090666) Acidithiobacillus ferrivorans SS3 11044418 YP_004784566.1 CDS Acife_2125 NC_015942.1 2090684 2092654 R KEGG: afr:AFE_2029 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; DNA topoisomerase, type IIA, subunit B, C-terminal; SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; DNA topoisomerase type IIA subunit B region 2 domain-containing protein complement(2090684..2092654) Acidithiobacillus ferrivorans SS3 11042983 YP_004784567.1 CDS Acife_2126 NC_015942.1 2092972 2093808 D PFAM: Signal transduction response regulator, C-terminal; KEGG: afe:Lferr_2550 putative winged helix family two component transcriptional regulator; winged helix family transcriptional regulator 2092972..2093808 Acidithiobacillus ferrivorans SS3 11044419 YP_004784568.1 CDS Acife_2127 NC_015942.1 2093857 2096901 R PFAM: Acriflavin resistance protein; KEGG: afe:Lferr_1699 acriflavin resistance protein; acriflavin resistance protein complement(2093857..2096901) Acidithiobacillus ferrivorans SS3 11042984 YP_004784569.1 CDS Acife_2128 NC_015942.1 2096901 2097938 R KEGG: afr:AFE_2036 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit complement(2096901..2097938) Acidithiobacillus ferrivorans SS3 11042985 YP_004784570.1 CDS Acife_2129 NC_015942.1 2097953 2099317 R PFAM: Outer membrane efflux protein; KEGG: afr:AFE_2037 outer membrane efflux protein; outer membrane efflux protein complement(2097953..2099317) Acidithiobacillus ferrivorans SS3 11044420 YP_004784571.1 CDS Acife_2130 NC_015942.1 2099387 2100700 R KEGG: afr:AFE_2031 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; integral membrane sensor signal transduction histidine kinase complement(2099387..2100700) Acidithiobacillus ferrivorans SS3 11042986 YP_004784572.1 CDS Acife_2131 NC_015942.1 2100697 2101359 R KEGG: afr:AFE_2032 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; two component winged helix family transcriptional regulator complement(2100697..2101359) Acidithiobacillus ferrivorans SS3 11042987 YP_004784573.1 CDS Acife_2132 NC_015942.1 2101447 2101758 R PFAM: Peptidase M4, propeptide, PepSY; KEGG: afr:AFE_2033 hypothetical protein; propeptide PepSY amd peptidase M4 complement(2101447..2101758) Acidithiobacillus ferrivorans SS3 11044421 YP_004784574.1 CDS Acife_2133 NC_015942.1 2101985 2104348 R PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: afr:AFE_2040 TonB-dependent receptor; TonB-dependent receptor complement(2101985..2104348) Acidithiobacillus ferrivorans SS3 11042988 YP_004784575.1 CDS Acife_2134 NC_015942.1 2104678 2105280 D KEGG: afr:AFE_3099 hypothetical protein; hypothetical protein 2104678..2105280 Acidithiobacillus ferrivorans SS3 11044422 YP_004784576.1 CDS Acife_2135 NC_015942.1 2105288 2106226 R KEGG: afr:AFE_2041 hypothetical protein; hypothetical protein complement(2105288..2106226) Acidithiobacillus ferrivorans SS3 11042989 YP_004784577.1 CDS Acife_2136 NC_015942.1 2106331 2107005 D TIGRFAM: Signal transduction response regulator, heavy metal response; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; KEGG: tin:Tint_1277 two component transcriptional regulator, winged helix family; SMART: Signal transduction response regulator, receiver region; two component heavy metal response winged helix family transcriptional regulator 2106331..2107005 Acidithiobacillus ferrivorans SS3 11042990 YP_004784578.1 CDS Acife_2137 NC_015942.1 2106983 2108425 D TIGRFAM: Signal transduction histidine kinase, heavy metal sensor; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; KEGG: tin:Tint_1278 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; heavy metal sensor signal transduction histidine kinase 2106983..2108425 Acidithiobacillus ferrivorans SS3 11044423 YP_004784579.1 CDS Acife_2138 NC_015942.1 2108604 2109908 D PFAM: Outer membrane efflux protein; KEGG: afr:AFE_2045 outer membrane efflux protein; outer membrane efflux protein 2108604..2109908 Acidithiobacillus ferrivorans SS3 11042991 YP_004784580.1 CDS Acife_2139 NC_015942.1 2109905 2110921 D TIGRFAM: Secretion protein HlyD; KEGG: afr:AFE_2044 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2109905..2110921 Acidithiobacillus ferrivorans SS3 11042992 YP_004784581.1 CDS Acife_2140 NC_015942.1 2110918 2113986 D PFAM: Acriflavin resistance protein; KEGG: afr:AFE_2043 transporter, AcrB/AcrD/AcrF family; acriflavin resistance protein 2110918..2113986 Acidithiobacillus ferrivorans SS3 11044424 YP_004784582.1 CDS Acife_2141 NC_015942.1 2114087 2115136 D PFAM: Protein of unknown function DUF6, transmembrane; KEGG: afr:AFE_2052 hypothetical protein; hypothetical protein 2114087..2115136 Acidithiobacillus ferrivorans SS3 11042993 YP_004784583.1 CDS Acife_2142 NC_015942.1 2115210 2115491 R KEGG: afe:Lferr_2097 hypothetical protein; hypothetical protein complement(2115210..2115491) Acidithiobacillus ferrivorans SS3 11042994 YP_004784584.1 CDS Acife_2143 NC_015942.1 2115561 2115731 R hypothetical protein complement(2115561..2115731) Acidithiobacillus ferrivorans SS3 11042995 YP_004784585.1 CDS Acife_2144 NC_015942.1 2115894 2116130 R hypothetical protein complement(2115894..2116130) Acidithiobacillus ferrivorans SS3 11042996 YP_004784586.1 CDS Acife_2145 NC_015942.1 2116207 2117490 D PFAM: Outer membrane efflux protein; KEGG: afr:AFE_1949 outer membrane heavy metal efflux protein, putative; outer membrane efflux protein 2116207..2117490 Acidithiobacillus ferrivorans SS3 11042997 YP_004784587.1 CDS Acife_2146 NC_015942.1 2117487 2118809 D KEGG: afe:Lferr_0171 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 2117487..2118809 Acidithiobacillus ferrivorans SS3 11044425 YP_004784588.1 CDS Acife_2147 NC_015942.1 2118802 2121912 D KEGG: afe:Lferr_0172 CzcA family heavy metal efflux pump; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump 2118802..2121912 Acidithiobacillus ferrivorans SS3 11042998 YP_004784589.1 CDS Acife_2148 NC_015942.1 2121982 2123994 D PFAM: Pyruvate kinase, barrel; KEGG: afe:Lferr_0897 pyruvate kinase; pyruvate kinase 2121982..2123994 Acidithiobacillus ferrivorans SS3 11042999 YP_004784590.1 CDS Acife_2149 NC_015942.1 2123833 2124585 R KEGG: afr:AFE_0750 CDP-diacylglycerol--serine O-phosphatidyltransferse; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase complement(2123833..2124585) Acidithiobacillus ferrivorans SS3 11044426 YP_004784591.1 CDS Acife_2150 NC_015942.1 2124582 2125244 R TIGRFAM: Phosphatidylserine decarboxylase-related protein; HAMAP: Phosphatidylserine decarboxylase proenzyme; KEGG: afr:AFE_0748 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase proenzyme complement(2124582..2125244) Acidithiobacillus ferrivorans SS3 11043000 YP_004784592.1 CDS Acife_2151 NC_015942.1 2125363 2126379 R TIGRFAM: Acetohydroxy acid isomeroreductase; HAMAP: Ketol-acid reductoisomerase; KEGG: afr:AFE_0747 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; Ketol-acid reductoisomerase complement(2125363..2126379) Acidithiobacillus ferrivorans SS3 11044427 YP_004784593.1 CDS Acife_2152 NC_015942.1 2126430 2126915 R KEGG: afr:AFE_0746 acetolactate synthase, small subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT; acetolactate synthase small subunit complement(2126430..2126915) Acidithiobacillus ferrivorans SS3 11043001 YP_004784594.1 CDS Acife_2153 NC_015942.1 2126919 2128664 R KEGG: afr:AFE_0745 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; acetolactate synthase large subunit, biosynthetic type complement(2126919..2128664) Acidithiobacillus ferrivorans SS3 11043002 YP_004784595.1 CDS Acife_2154 NC_015942.1 2128797 2130335 R KEGG: afr:AFE_0744 MutS domain V protein; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS domain-containing protein complement(2128797..2130335) Acidithiobacillus ferrivorans SS3 11043003 YP_004784596.1 CDS Acife_2155 NC_015942.1 2130398 2130823 R KEGG: afr:AFE_0743 hypothetical protein; hypothetical protein complement(2130398..2130823) Acidithiobacillus ferrivorans SS3 11043004 YP_004784597.1 CDS Acife_2156 NC_015942.1 2130823 2131254 R KEGG: afr:AFE_0742 conserved hypothetical protein TIGR00149; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047; hypothetical protein complement(2130823..2131254) Acidithiobacillus ferrivorans SS3 11043005 YP_004784598.1 CDS Acife_2157 NC_015942.1 2131235 2131801 R PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: afr:AFE_0741 cytidine and deoxycytidylate deaminase family protein; zinc-binding CMP/dCMP deaminase complement(2131235..2131801) Acidithiobacillus ferrivorans SS3 11043006 YP_004784599.1 CDS Acife_2158 NC_015942.1 2132026 2133090 D TIGRFAM: Type IV pilus assembly protein PilM; KEGG: afr:AFE_0739 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 2132026..2133090 Acidithiobacillus ferrivorans SS3 11043007 YP_004784600.1 CDS Acife_2159 NC_015942.1 2133087 2133680 D PFAM: Fimbrial assembly; KEGG: afr:AFE_0738 type IV pilus biogenesis protein PilN; fimbrial assembly family protein 2133087..2133680 Acidithiobacillus ferrivorans SS3 11043008 YP_004784601.1 CDS Acife_2160 NC_015942.1 2133677 2134330 D PFAM: Pilus assembly protein, PilO; KEGG: afr:AFE_0737 fimbrial assembly protein PilO, putative; Pilus assembly protein PilO 2133677..2134330 Acidithiobacillus ferrivorans SS3 11044428 YP_004784602.1 CDS Acife_2161 NC_015942.1 2134327 2134875 D PFAM: Pilus assembly protein PilP; KEGG: afr:AFE_0736 type 4 fimbrial biogenesis protein PilP, putative; Pilus assembly protein PilP 2134327..2134875 Acidithiobacillus ferrivorans SS3 11043009 YP_004784603.1 CDS Acife_2162 NC_015942.1 2134920 2137277 D KEGG: afr:AFE_0735 fimbrial assembly protein PilQ, putative; TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; type IV pilus secretin PilQ 2134920..2137277 Acidithiobacillus ferrivorans SS3 11043010 YP_004784604.1 CDS Acife_2163 NC_015942.1 2137274 2137813 D KEGG: afr:AFE_0734 shikimate kinase; HAMAP: Shikimate kinase; PFAM: Shikimate kinase; shikimate kinase 2137274..2137813 Acidithiobacillus ferrivorans SS3 11044429 YP_004784605.1 CDS Acife_2164 NC_015942.1 2137917 2139011 D TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase; KEGG: afr:AFE_0733 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; 3-dehydroquinate synthase 2137917..2139011 Acidithiobacillus ferrivorans SS3 11044430 YP_004784606.1 CDS Acife_2165 NC_015942.1 2139004 2139843 D KEGG: afe:Lferr_0880 thymidylate synthase, flavin-dependent; TIGRFAM: Thymidylate synthase ThyX; PFAM: Thymidylate synthase ThyX; thymidylate synthase, flavin-dependent 2139004..2139843 Acidithiobacillus ferrivorans SS3 11043011 YP_004784607.1 CDS Acife_2166 NC_015942.1 2139836 2141008 D SMART: Metal-dependent phosphohydrolase, HD region; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; KEGG: afr:AFE_0731 deoxyguanosinetriphosphate triphosphohydrolase, putative; HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase-like protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2139836..2141008 Acidithiobacillus ferrivorans SS3 11043012 YP_004784608.1 CDS Acife_2167 NC_015942.1 2141145 2145572 D PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal; KEGG: afr:AFE_0730 glutamate synthase, large subunit; ferredoxin-dependent glutamate synthase 2141145..2145572 Acidithiobacillus ferrivorans SS3 11043013 YP_004784609.1 CDS Acife_2168 NC_015942.1 2145601 2146998 D KEGG: afr:AFE_0729 glutamate synthase, small subunit; TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 2; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutamate synthase small subunit 2145601..2146998 Acidithiobacillus ferrivorans SS3 11043014 YP_004784610.1 CDS Acife_2169 NC_015942.1 2147002 2148060 D TIGRFAM: Uroporphyrinogen decarboxylase HemE; HAMAP: Uroporphyrinogen decarboxylase HemE; KEGG: afr:AFE_0728 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 2147002..2148060 Acidithiobacillus ferrivorans SS3 11043015 YP_004784611.1 CDS Acife_2170 NC_015942.1 2148057 2148959 R TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; KEGG: afe:Lferr_0875 1-acyl-sn-glycerol-3-phosphate acyltransferase; SMART: Phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase complement(2148057..2148959) Acidithiobacillus ferrivorans SS3 11044431 YP_004784612.1 CDS Acife_2171 NC_015942.1 2148956 2149732 R KEGG: afr:AFE_0726 hypothetical protein; hypothetical protein complement(2148956..2149732) Acidithiobacillus ferrivorans SS3 11043016 YP_004784613.1 CDS Acife_2172 NC_015942.1 2150089 2150298 D KEGG: afr:AFE_0725 hypothetical protein; hypothetical protein 2150089..2150298 Acidithiobacillus ferrivorans SS3 11043017 YP_004784614.1 CDS Acife_2173 NC_015942.1 2150295 2151263 D PFAM: Alpha/beta hydrolase fold-1; KEGG: afr:AFE_0724 hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold domain-containing protein 2150295..2151263 Acidithiobacillus ferrivorans SS3 11043018 YP_004784615.1 CDS Acife_2174 NC_015942.1 2151260 2151631 D PFAM: HTH transcriptional regulator, LysR; KEGG: afr:AFE_0723 helix-turn-helix domain protein; putative ModE family transcriptional regulator 2151260..2151631 Acidithiobacillus ferrivorans SS3 11043019 YP_004784616.1 CDS Acife_2175 NC_015942.1 2151628 2153148 D KEGG: afr:AFE_0722 threonine ammonia-lyase, biosynthetic; TIGRFAM: Threonine dehydratase I; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal; threonine dehydratase, biosynthetic 2151628..2153148 Acidithiobacillus ferrivorans SS3 11044432 YP_004784617.1 CDS Acife_2176 NC_015942.1 2153191 2154441 R PFAM: FAD dependent oxidoreductase; KEGG: afr:AFE_0720 FAD-dependent oxidoreductase; FAD dependent oxidoreductase complement(2153191..2154441) Acidithiobacillus ferrivorans SS3 11043020 YP_004784618.1 CDS Acife_2178 NC_015942.1 2155050 2156903 R KEGG: rpe:RPE_1031 hypothetical protein; hypothetical protein complement(2155050..2156903) Acidithiobacillus ferrivorans SS3 11043022 YP_004784619.1 CDS Acife_2179 NC_015942.1 2156894 2157418 R KEGG: vha:VIBHAR_05006 hypothetical protein; hypothetical protein complement(2156894..2157418) Acidithiobacillus ferrivorans SS3 11043023 YP_004784620.1 CDS Acife_2180 NC_015942.1 2157406 2158479 R KEGG: par:Psyc_0020 hypothetical protein; hypothetical protein complement(2157406..2158479) Acidithiobacillus ferrivorans SS3 11043024 YP_004784621.1 CDS Acife_2181 NC_015942.1 2158476 2161454 R PFAM: DNA methylase N-4/N-6; KEGG: vei:Veis_4172 DNA methylase N-4/N-6 domain-containing protein; DNA methylase N-4/N-6 domain-containing protein complement(2158476..2161454) Acidithiobacillus ferrivorans SS3 11043025 YP_004784622.1 CDS Acife_2182 NC_015942.1 2161475 2162317 R KEGG: cph:Cpha266_1711 DNA-damage-inducible protein D; DNA-damage-inducible protein D complement(2161475..2162317) Acidithiobacillus ferrivorans SS3 11043026 YP_004784623.1 CDS Acife_2183 NC_015942.1 2162314 2162559 R manually curated; PFAM: Addiction module component, CHP02574; putative addiction module family protein complement(2162314..2162559) Acidithiobacillus ferrivorans SS3 11044433 YP_004784624.1 CDS Acife_2184 NC_015942.1 2162550 2165603 R PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: vei:Veis_4168 type III restriction enzyme, res subunit; type III restriction protein res subunit complement(2162550..2165603) Acidithiobacillus ferrivorans SS3 11043027 YP_004784625.1 CDS Acife_2185 NC_015942.1 2165916 2166866 R KEGG: afr:AFE_2056 protein-export membrane protein SecF; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein SecF complement(2165916..2166866) Acidithiobacillus ferrivorans SS3 11044434 YP_004784626.1 CDS Acife_2186 NC_015942.1 2166874 2168658 R KEGG: afr:AFE_2057 protein-export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein SecD complement(2166874..2168658) Acidithiobacillus ferrivorans SS3 11043029 YP_004784627.1 CDS Acife_2187 NC_015942.1 2168669 2169004 R KEGG: afr:AFE_2058 preprotein translocase, YajC subunit; TIGRFAM: YajC; PFAM: YajC; preprotein translocase subunit YajC complement(2168669..2169004) Acidithiobacillus ferrivorans SS3 11043030 YP_004784628.1 CDS Acife_2188 NC_015942.1 2169046 2170161 R TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; KEGG: afr:AFE_2059 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; Queuine tRNA-ribosyltransferase complement(2169046..2170161) Acidithiobacillus ferrivorans SS3 11043031 YP_004784629.1 CDS Acife_2189 NC_015942.1 2170158 2171195 R TIGRFAM: Queuosine biosynthesis protein; HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; KEGG: afr:AFE_2060 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; S-adenosylmethionine:tRNA ribosyltransferase-isomerase complement(2170158..2171195) Acidithiobacillus ferrivorans SS3 11043032 YP_004784630.1 CDS Acife_2190 NC_015942.1 2171204 2172529 R PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; KEGG: afr:AFE_2061 CBS domain protein; hypothetical protein complement(2171204..2172529) Acidithiobacillus ferrivorans SS3 11043033 YP_004784631.1 CDS Acife_2191 NC_015942.1 2172568 2173161 R PFAM: Cystathionine beta-synthase, core; KEGG: afr:AFE_2062 CBS domain protein; CBS domain-containing protein complement(2172568..2173161) Acidithiobacillus ferrivorans SS3 11043034 YP_004784632.1 CDS Acife_2192 NC_015942.1 2173225 2174439 R KEGG: afr:AFE_2063 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; O-succinylhomoserine sulfhydrylase complement(2173225..2174439) Acidithiobacillus ferrivorans SS3 11043035 YP_004784633.1 CDS Acife_2193 NC_015942.1 2174436 2175881 R KEGG: afe:Lferr_1722 amidophosphoribosyltransferase; TIGRFAM: Amidophosphoribosyl transferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase; amidophosphoribosyltransferase complement(2174436..2175881) Acidithiobacillus ferrivorans SS3 11044435 YP_004784634.1 CDS Acife_2194 NC_015942.1 2175871 2176368 R PFAM: Colicin V production protein; KEGG: afr:AFE_2065 CvpA family protein; colicin V production protein complement(2175871..2176368) Acidithiobacillus ferrivorans SS3 11043036 YP_004784635.1 CDS Acife_2195 NC_015942.1 2176365 2177654 R KEGG: afr:AFE_2066 folylpolyglutamate synthase/dihydrofolate synthase; TIGRFAM: Folylpolyglutamate synthetase; PFAM: Mur ligase, central; Mur ligase, C-terminal; FolC bifunctional protein complement(2176365..2177654) Acidithiobacillus ferrivorans SS3 11043037 YP_004784636.1 CDS Acife_2196 NC_015942.1 2177683 2178567 R TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; HAMAP: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; KEGG: afr:AFE_2067 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: Carboxyl transferase; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta complement(2177683..2178567) Acidithiobacillus ferrivorans SS3 11043038 YP_004784637.1 CDS Acife_2197 NC_015942.1 2178564 2179382 R TIGRFAM: Tryptophan synthase, alpha chain; HAMAP: Tryptophan synthase, alpha chain; KEGG: afr:AFE_2068 tryptophan synthase subunit alpha; PFAM: Tryptophan synthase, alpha chain; tryptophan synthase alpha chain complement(2178564..2179382) Acidithiobacillus ferrivorans SS3 11043039 YP_004784638.1 CDS Acife_2198 NC_015942.1 2179379 2180578 R TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain; KEGG: afr:AFE_2069 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; tryptophan synthase beta chain complement(2179379..2180578) Acidithiobacillus ferrivorans SS3 11044436 YP_004784639.1 CDS Acife_2199 NC_015942.1 2180589 2181200 R PRAI; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: afr:AFE_2070 N-(5'phosphoribosyl)anthranilate isomerase; N-(5'phosphoribosyl)anthranilate isomerase complement(2180589..2181200) Acidithiobacillus ferrivorans SS3 11043040 YP_004784640.1 CDS Acife_2200 NC_015942.1 2181260 2182075 R TIGRFAM: Pseudouridine synthase I, TruA; HAMAP: Pseudouridine synthase I, TruA; KEGG: afr:AFE_2071 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; tRNA pseudouridine synthase A complement(2181260..2182075) Acidithiobacillus ferrivorans SS3 11043041 YP_004784641.1 CDS Acife_2201 NC_015942.1 2182089 2184362 R TIGRFAM: Motility protein FimV, C-terminal; Motility protein FimV, N-terminal; KEGG: afe:Lferr_1730 Tfp pilus assembly protein FimV-like protein; Motility protein FimV complement(2182089..2184362) Acidithiobacillus ferrivorans SS3 11043042 YP_004784642.1 CDS Acife_2202 NC_015942.1 2184423 2185445 R KEGG: afr:AFE_2074 aspartate-semialdehyde dehydrogenase; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; PFAM: Semialdehyde dehydrogenase, dimerisation region; Semialdehyde dehydrogenase, NAD-binding; aspartate-semialdehyde dehydrogenase complement(2184423..2185445) Acidithiobacillus ferrivorans SS3 11043043 YP_004784643.1 CDS Acife_2203 NC_015942.1 2185453 2186529 R TIGRFAM: Isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; KEGG: afr:AFE_2075 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase complement(2185453..2186529) Acidithiobacillus ferrivorans SS3 11043044 YP_004784644.1 CDS Acife_2204 NC_015942.1 2186526 2187083 R hypothetical protein complement(2186526..2187083) Acidithiobacillus ferrivorans SS3 11043045 YP_004784645.1 CDS Acife_2205 NC_015942.1 2187157 2187765 D KEGG: afe:Lferr_1733 molybdopterin-guanine dinucleotide biosynthesis protein A; TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein A; HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A 2187157..2187765 Acidithiobacillus ferrivorans SS3 11044437 YP_004784646.1 CDS Acife_2206 NC_015942.1 2187762 2188256 D KEGG: afr:AFE_2077 molybdopterin-guanine dinucleotide biosynthesis protein B; TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis MobB region; PFAM: Molybdopterin-guanine dinucleotide biosynthesis MobB region; molybdopterin-guanine dinucleotide biosynthesis protein B 2187762..2188256 Acidithiobacillus ferrivorans SS3 11043046 YP_004784647.1 CDS Acife_2207 NC_015942.1 2188259 2189497 D KEGG: afr:AFE_2078 molybdopterin biosynthesis MoeA protein; TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal region, domain I/II; Molybdopterin binding; MoeA, C-terminal, domain IV; molybdenum cofactor synthesis domain-containing protein 2188259..2189497 Acidithiobacillus ferrivorans SS3 11043047 YP_004784648.1 CDS Acife_2208 NC_015942.1 2189504 2190370 R KEGG: afr:AFE_2079 endonuclease; hypothetical protein complement(2189504..2190370) Acidithiobacillus ferrivorans SS3 11043048 YP_004784649.1 CDS Acife_2209 NC_015942.1 2190410 2191159 D KEGG: afr:AFE_2644 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 2190410..2191159 Acidithiobacillus ferrivorans SS3 11043049 YP_004784650.1 CDS Acife_2211 NC_015942.1 2191341 2191949 R KEGG: afr:AFE_0573 conserved hypothetical protein TIGR00296; TIGRFAM: AMMECR1; PFAM: AMMECR1; AMMECR1 domain-containing protein complement(2191341..2191949) Acidithiobacillus ferrivorans SS3 11043050 YP_004784651.1 CDS Acife_2212 NC_015942.1 2191936 2192757 R PFAM: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related; KEGG: afe:Lferr_0726 hypothetical protein; mediator of ErbB2-driven cell motility-containing protein complement(2191936..2192757) Acidithiobacillus ferrivorans SS3 11044439 YP_004784652.1 CDS Acife_2213 NC_015942.1 2192830 2194137 R KEGG: afr:AFE_2858 arsenical pump membrane protein; TIGRFAM: Arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; arsenical pump membrane protein complement(2192830..2194137) Acidithiobacillus ferrivorans SS3 11043051 YP_004784653.1 CDS Acife_2214 NC_015942.1 2194228 2194680 D KEGG: afr:AFE_2859 transcriptional regulator, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; regulatory protein ArsR 2194228..2194680 Acidithiobacillus ferrivorans SS3 11043052 YP_004784654.1 CDS Acife_2215 NC_015942.1 2194576 2195718 R PFAM: HAMP linker domain; KEGG: dvm:DvMF_1372 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; histidine kinase HAMP region domain-containing protein complement(2194576..2195718) Acidithiobacillus ferrivorans SS3 11044440 YP_004784655.1 CDS Acife_2216 NC_015942.1 2195746 2196225 R KEGG: cho:Chro.60463 hypothetical protein; hypothetical protein complement(2195746..2196225) Acidithiobacillus ferrivorans SS3 11043053 YP_004784656.1 CDS Acife_2217 NC_015942.1 2196889 2197932 D PFAM: Uncharacterised protein family UPF0118; KEGG: afr:AFE_0571 hypothetical protein; hypothetical protein 2196889..2197932 Acidithiobacillus ferrivorans SS3 11043054 YP_004784657.1 CDS Acife_2218 NC_015942.1 2197937 2199277 D KEGG: afr:AFE_0570 protoporphyrinogen oxidase; TIGRFAM: Protoporphyrinogen oxidase; PFAM: Amine oxidase; protoporphyrinogen oxidase 2197937..2199277 Acidithiobacillus ferrivorans SS3 11044441 YP_004784658.1 CDS Acife_2219 NC_015942.1 2199291 2200139 R PFAM: YkuD domain; KEGG: afr:AFE_0569 ErfK/YbiS/YcfS/YnhG family; ErfK/YbiS/YcfS/YnhG family protein complement(2199291..2200139) Acidithiobacillus ferrivorans SS3 11043055 YP_004784659.1 CDS Acife_2220 NC_015942.1 2200228 2202282 R TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; KEGG: afr:AFE_0568 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; ATP-dependent DNA helicase RecG complement(2200228..2202282) Acidithiobacillus ferrivorans SS3 11044442 YP_004784660.1 CDS Acife_2221 NC_015942.1 2202284 2202499 R KEGG: afr:AFE_0567 hypothetical protein; hypothetical protein complement(2202284..2202499) Acidithiobacillus ferrivorans SS3 11043056 YP_004784661.1 CDS Acife_2222 NC_015942.1 2202501 2202890 R KEGG: afr:AFE_0566 endoribonuclease L-PSP, putative; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP complement(2202501..2202890) Acidithiobacillus ferrivorans SS3 11043057 YP_004784662.1 CDS Acife_2223 NC_015942.1 2202905 2205187 R TIGRFAM: RelA/SpoT protein; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD region, subdomain; TGS; Amino acid-binding ACT; KEGG: afe:Lferr_0719 (p)ppGpp synthetase I SpoT/RelA; SMART: Metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA complement(2202905..2205187) Acidithiobacillus ferrivorans SS3 11044443 YP_004784663.1 CDS Acife_2224 NC_015942.1 2205171 2205446 R TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: afr:AFE_0564 DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; DNA-directed RNA polymerase subunit omega complement(2205171..2205446) Acidithiobacillus ferrivorans SS3 11043058 YP_004784664.1 CDS Acife_2225 NC_015942.1 2205471 2206109 R SMART: Guanylate kinase/L-type calcium channel region; TIGRFAM: Guanylate kinase, sub-group; KEGG: afr:AFE_0563 guanylate kinase; HAMAP: Guanylate kinase, sub-group; PFAM: Guanylate kinase; guanylate kinase complement(2205471..2206109) Acidithiobacillus ferrivorans SS3 11044444 YP_004784665.1 CDS Acife_2226 NC_015942.1 2206116 2206985 R KEGG: afr:AFE_0562 YicC family protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: Domain of unknown function DUF1732; YicC-like, N-terminal; hypothetical protein complement(2206116..2206985) Acidithiobacillus ferrivorans SS3 11043059 YP_004784666.1 CDS Acife_2227 NC_015942.1 2207205 2207567 D KEGG: afr:AFE_0560 hypothetical protein; hypothetical protein 2207205..2207567 Acidithiobacillus ferrivorans SS3 11043060 YP_004784667.1 CDS Acife_2228 NC_015942.1 2207571 2208053 R PFAM: Redoxin; KEGG: afr:AFE_0047 hypothetical protein; Redoxin domain-containing protein complement(2207571..2208053) Acidithiobacillus ferrivorans SS3 11043061 YP_004784668.1 CDS Acife_2229 NC_015942.1 2208098 2210416 R KEGG: afr:AFE_3054 von Willebrand factor type A domain protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; von Willebrand factor type A complement(2208098..2210416) Acidithiobacillus ferrivorans SS3 11043062 YP_004784669.1 CDS Acife_2230 NC_015942.1 2210469 2211272 R KEGG: afr:AFE_3053 CbbQ protein; CbbQ protein complement(2210469..2211272) Acidithiobacillus ferrivorans SS3 11044445 YP_004784670.1 CDS Acife_2231 NC_015942.1 2211425 2211781 R PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: afr:AFE_3052 ribulose bisphosphate carboxylase, small subunit; ribulose bisphosphate carboxylase small chain complement(2211425..2211781) Acidithiobacillus ferrivorans SS3 11043063 YP_004784671.1 CDS Acife_2232 NC_015942.1 2211860 2213281 R KEGG: afr:AFE_3051 ribulose bisophosphate carboxylase; HAMAP: Ribulose bisphosphate carboxylase large chain; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal; ribulose bisphosphate carboxylase large chain complement(2211860..2213281) Acidithiobacillus ferrivorans SS3 11044446 YP_004784672.1 CDS Acife_2234 NC_015942.1 2213591 2213683 D hypothetical protein 2213591..2213683 Acidithiobacillus ferrivorans SS3 11043065 YP_004784673.1 CDS Acife_2235 NC_015942.1 2213710 2214744 D PFAM: Secretion protein HlyD; KEGG: afr:AFE_2861 secretion protein, HlyD family; secretion protein HlyD family protein 2213710..2214744 Acidithiobacillus ferrivorans SS3 11044447 YP_004784674.1 CDS Acife_2236 NC_015942.1 2214748 2216475 D KEGG: afr:AFE_2862 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 2214748..2216475 Acidithiobacillus ferrivorans SS3 11043066 YP_004784675.1 CDS Acife_2237 NC_015942.1 2216472 2217587 D PFAM: ABC-2 type transporter; KEGG: afr:AFE_2863 ABC transporter, permease protein, putative; ABC transporter 2216472..2217587 Acidithiobacillus ferrivorans SS3 11044448 YP_004784676.1 CDS Acife_2238 NC_015942.1 2217587 2218696 D PFAM: ABC-2 type transporter; KEGG: afr:AFE_2864 ABC transporter, permease protein, putative; ABC transporter 2217587..2218696 Acidithiobacillus ferrivorans SS3 11043067 YP_004784677.1 CDS Acife_2239 NC_015942.1 2218883 2219173 D KEGG: afr:AFE_1070 DNA-binding protein, HU family; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 2218883..2219173 Acidithiobacillus ferrivorans SS3 11043068 YP_004784678.1 CDS Acife_2240 NC_015942.1 2219235 2219468 R KEGG: bbr:BB4378 histone protein; hypothetical protein complement(2219235..2219468) Acidithiobacillus ferrivorans SS3 11043069 YP_004784679.1 CDS Acife_2241 NC_015942.1 2219830 2220579 D hypothetical protein 2219830..2220579 Acidithiobacillus ferrivorans SS3 11043070 YP_004784680.1 CDS Acife_2242 NC_015942.1 2220748 2220909 D KEGG: ana:all2689 type I restriction enzyme, modification chain; hypothetical protein 2220748..2220909 Acidithiobacillus ferrivorans SS3 11043071 YP_004784681.1 CDS Acife_2243 NC_015942.1 2221042 2221554 D PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: afe:Lferr_0929 pyridoxamine 5'-phosphate oxidase-like protein; FMN-binding pyridoxamine 5'-phosphate oxidase-like protein 2221042..2221554 Acidithiobacillus ferrivorans SS3 11043072 YP_004784682.1 CDS Acife_2244 NC_015942.1 2221594 2221719 D hypothetical protein 2221594..2221719 Acidithiobacillus ferrivorans SS3 11043073 YP_004784683.1 CDS Acife_2245 NC_015942.1 2221754 2221990 D PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: bvi:Bcep1808_0145 SpoVT/AbrB domain-containing protein; SpoVT/AbrB domain-containing protein 2221754..2221990 Acidithiobacillus ferrivorans SS3 11044449 YP_004784684.1 CDS Acife_2246 NC_015942.1 2221990 2222394 D PFAM: PilT protein, N-terminal; KEGG: avn:Avin_36180 PilT domain-containing protein; PilT protein domain-containing protein 2221990..2222394 Acidithiobacillus ferrivorans SS3 11043074 YP_004784685.1 CDS Acife_2247 NC_015942.1 2222406 2222522 R KEGG: afr:AFE_1597 transposase, degenerate; transposase, degenerate complement(2222406..2222522) Acidithiobacillus ferrivorans SS3 11043075 YP_004784686.1 CDS Acife_2248 NC_015942.1 2222746 2222850 D hypothetical protein 2222746..2222850 Acidithiobacillus ferrivorans SS3 11043076 YP_004784687.1 CDS Acife_2249 NC_015942.1 2222861 2222986 D hypothetical protein 2222861..2222986 Acidithiobacillus ferrivorans SS3 11044450 YP_004784688.1 CDS Acife_2250 NC_015942.1 2222983 2223903 D PFAM: Restriction endonuclease, type IV-like, Mrr; KEGG: pgi:PG0968 Mrr restriction system protein; restriction endonuclease 2222983..2223903 Acidithiobacillus ferrivorans SS3 11043077 YP_004784689.1 CDS Acife_2251 NC_015942.1 2223893 2225065 D KEGG: mmh:Mmah_1308 hypothetical protein; hypothetical protein 2223893..2225065 Acidithiobacillus ferrivorans SS3 11044451 YP_004784690.1 CDS Acife_2252 NC_015942.1 2225120 2227471 D KEGG: bid:Bind_2672 N-6 DNA methylase; TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit; PFAM: DNA methylase, adenine-specific; type I restriction-modification system, M subunit 2225120..2227471 Acidithiobacillus ferrivorans SS3 11043078 YP_004784691.1 CDS Acife_2253 NC_015942.1 2227462 2228760 D PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: bid:Bind_2673 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 2227462..2228760 Acidithiobacillus ferrivorans SS3 11043079 YP_004784692.1 CDS Acife_2254 NC_015942.1 2228806 2229156 D PFAM: Protein of unknown function DUF891; KEGG: afr:AFE_1384 hypothetical protein; hypothetical protein 2228806..2229156 Acidithiobacillus ferrivorans SS3 11044452 YP_004784693.1 CDS Acife_2255 NC_015942.1 2229153 2229467 D KEGG: afr:AFE_1383 hypothetical protein; hypothetical protein 2229153..2229467 Acidithiobacillus ferrivorans SS3 11043080 YP_004784694.1 CDS Acife_2256 NC_015942.1 2229556 2229810 D KEGG: afr:AFE_0889 stability protein StbD, putative; stability protein StbD 2229556..2229810 Acidithiobacillus ferrivorans SS3 11043081 YP_004784695.1 CDS Acife_2257 NC_015942.1 2229800 2230081 D KEGG: afr:AFE_0890 stability protein StbE, putative; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system; RelE/StbE family addiction module toxin 2229800..2230081 Acidithiobacillus ferrivorans SS3 11043082 YP_004784696.1 CDS Acife_2258 NC_015942.1 2230085 2233162 D TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: cyn:Cyan7425_3081 type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicase, N-terminal; HsdR family type I site-specific deoxyribonuclease 2230085..2233162 Acidithiobacillus ferrivorans SS3 11043083 YP_004784697.1 CDS Acife_2259 NC_015942.1 2233152 2233892 D PFAM: Protein of unknown function DUF45; KEGG: afr:AFE_0760 hypothetical protein; hypothetical protein 2233152..2233892 Acidithiobacillus ferrivorans SS3 11043084 YP_004784698.1 CDS Acife_2261 NC_015942.1 2234873 2235859 R KEGG: afr:AFE_0577 hypothetical protein; hypothetical protein complement(2234873..2235859) Acidithiobacillus ferrivorans SS3 11043086 YP_004784699.1 CDS Acife_2262 NC_015942.1 2235927 2237381 R KEGG: afe:Lferr_0730 para-aminobenzoate synthase subunit I; TIGRFAM: Para-aminobenzoate synthase, component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; para-aminobenzoate synthase subunit I complement(2235927..2237381) Acidithiobacillus ferrivorans SS3 11043087 YP_004784700.1 CDS Acife_2263 NC_015942.1 2237484 2238821 D KEGG: afr:AFE_0575 type I secretion outer membrane protein, TolC family; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein; type I secretion outer membrane protein, TolC family 2237484..2238821 Acidithiobacillus ferrivorans SS3 11044454 YP_004784701.1 CDS Acife_2264 NC_015942.1 2238848 2240617 D KEGG: afr:AFE_0559 integral membrane protein MviN; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN; integral membrane protein MviN 2238848..2240617 Acidithiobacillus ferrivorans SS3 11043088 YP_004784702.1 CDS Acife_2265 NC_015942.1 2240610 2241065 D PFAM: Protein of unknown function DUF2203; KEGG: afe:Lferr_0713 hypothetical protein; hypothetical protein 2240610..2241065 Acidithiobacillus ferrivorans SS3 11043089 YP_004784703.1 CDS Acife_2266 NC_015942.1 2241200 2242138 D TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: afr:AFE_0557 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; riboflavin biosynthesis protein RibF 2241200..2242138 Acidithiobacillus ferrivorans SS3 11043090 YP_004784704.1 CDS Acife_2267 NC_015942.1 2242141 2244954 D TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; HAMAP: Isoleucyl-tRNA synthetase; KEGG: afr:AFE_0556 isoleucyl-tRNA synthetase; Isoleucyl-tRNA synthetase 2242141..2244954 Acidithiobacillus ferrivorans SS3 11043091 YP_004784705.1 CDS Acife_2268 NC_015942.1 2244954 2245412 D TIGRFAM: Peptidase A8, signal peptidase II; HAMAP: Peptidase A8, signal peptidase II; KEGG: afr:AFE_0555 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II; lipoprotein signal peptidase 2244954..2245412 Acidithiobacillus ferrivorans SS3 11044455 YP_004784706.1 CDS Acife_2269 NC_015942.1 2245660 2245878 D KEGG: afr:AFE_0554 hypothetical protein; hypothetical protein 2245660..2245878 Acidithiobacillus ferrivorans SS3 11043092 YP_004784707.1 CDS Acife_2270 NC_015942.1 2245954 2246700 R PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: gvi:gll2154 oxidoreductase; short-chain dehydrogenase/reductase SDR complement(2245954..2246700) Acidithiobacillus ferrivorans SS3 11043093 YP_004784708.1 CDS Acife_2271 NC_015942.1 2246697 2247272 R PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: afr:AFE_0553 hypothetical protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen complement(2246697..2247272) Acidithiobacillus ferrivorans SS3 11044456 YP_004784709.1 CDS Acife_2272 NC_015942.1 2247341 2249104 R KEGG: afr:AFE_0552 ABC transporter, permease/ATP-binding protein; PFAM: ABC transporter, N-terminal; ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter complement(2247341..2249104) Acidithiobacillus ferrivorans SS3 11043094 YP_004784710.1 CDS Acife_2273 NC_015942.1 2249231 2249713 D KEGG: hna:Hneap_1146 hypothetical protein; hypothetical protein 2249231..2249713 Acidithiobacillus ferrivorans SS3 11043095 YP_004784711.1 CDS Acife_2274 NC_015942.1 2249698 2250531 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: afr:AFE_0551 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(2249698..2250531) Acidithiobacillus ferrivorans SS3 11043096 YP_004784712.1 CDS Acife_2275 NC_015942.1 2250528 2254211 R KEGG: afe:Lferr_0705 membrane protein; membrane protein complement(2250528..2254211) Acidithiobacillus ferrivorans SS3 11043097 YP_004784713.1 CDS Acife_2276 NC_015942.1 2254470 2257334 D KEGG: afr:AFE_0548 glutamate-ammonia-ligase adenylyltransferase; HAMAP: Glutamate-ammonia-ligase adenylyltransferase; PFAM: Glutamate-ammonia ligase adenylyltransferase; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; glutamate-ammonia-ligase adenylyltransferase 2254470..2257334 Acidithiobacillus ferrivorans SS3 11043098 YP_004784714.1 CDS Acife_2277 NC_015942.1 2257347 2258270 D KEGG: afr:AFE_0547 branched-chain amino acid aminotransferase; TIGRFAM: Branched-chain amino acid aminotransferase I; PFAM: Aminotransferase, class IV; branched-chain amino acid aminotransferase 2257347..2258270 Acidithiobacillus ferrivorans SS3 11043099 YP_004784715.1 CDS Acife_2278 NC_015942.1 2258275 2258487 D KEGG: afr:AFE_0546 hypothetical protein; hypothetical protein 2258275..2258487 Acidithiobacillus ferrivorans SS3 11043100 YP_004784716.1 CDS Acife_2279 NC_015942.1 2258508 2260337 R KEGG: afr:AFE_0545 thiol:disulfide interchange protein DsbD; HAMAP: Thiol:disulfide interchange protein dsbD; PFAM: Cytochrome c assembly protein, transmembrane region; Thioredoxin domain; thiol:disulfide interchange protein dsbD complement(2258508..2260337) Acidithiobacillus ferrivorans SS3 11044457 YP_004784717.1 CDS Acife_2280 NC_015942.1 2260403 2260669 R hypothetical protein complement(2260403..2260669) Acidithiobacillus ferrivorans SS3 11043101 YP_004784718.1 CDS Acife_2281 NC_015942.1 2260733 2261515 D PFAM: Alpha/beta hydrolase fold-1; KEGG: afr:AFE_0544 hypothetical protein; alpha/beta hydrolase fold domain-containing protein 2260733..2261515 Acidithiobacillus ferrivorans SS3 11043102 YP_004784719.1 CDS Acife_2282 NC_015942.1 2261618 2261908 D KEGG: afr:AFE_0543 co-chaperonin GroES; HAMAP: Chaperonin Cpn10, subgroup; PFAM: Chaperonin Cpn10; 10 kDa chaperonin 2261618..2261908 Acidithiobacillus ferrivorans SS3 11043103 YP_004784720.1 CDS Acife_2283 NC_015942.1 2261956 2263611 D TIGRFAM: Chaperonin Cpn60; HAMAP: 60 kDa chaperonin; KEGG: afr:AFE_0542 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1; 60 kDa chaperonin 2261956..2263611 Acidithiobacillus ferrivorans SS3 11043104 YP_004784721.1 CDS Acife_2284 NC_015942.1 2263716 2264039 R KEGG: ppd:Ppro_0946 hypothetical protein; hypothetical protein complement(2263716..2264039) Acidithiobacillus ferrivorans SS3 11044458 YP_004784722.1 CDS Acife_2285 NC_015942.1 2264026 2264319 R KEGG: ppd:Ppro_0945 hypothetical protein; hypothetical protein complement(2264026..2264319) Acidithiobacillus ferrivorans SS3 11043105 YP_004784723.1 CDS Acife_2286 NC_015942.1 2264538 2265107 D PFAM: Phosphoribosyltransferase; KEGG: afr:AFE_0540 adenine phosphoribosyltransferase; phosphoribosyltransferase 2264538..2265107 Acidithiobacillus ferrivorans SS3 11043106 YP_004784724.1 CDS Acife_2287 NC_015942.1 2265118 2266791 D PFAM: Sulphate adenylyltransferase; Adenylylsulphate kinase, C-terminal; TIGRFAM: Adenylylsulphate kinase, C-terminal; HAMAP: Adenylyl-sulfate kinase; KEGG: afr:AFE_0539 sulfate adenylyltransferase, putative/adenylylsulfate kinase; adenylyl-sulfate kinase 2265118..2266791 Acidithiobacillus ferrivorans SS3 11044459 YP_004784725.1 CDS Acife_2288 NC_015942.1 2266828 2268357 D PFAM: Protein of unknown function DUF814; Fibronectin-binding A, N-terminal; KEGG: afr:AFE_0538 hypothetical protein; hypothetical protein 2266828..2268357 Acidithiobacillus ferrivorans SS3 11043107 YP_004784726.1 CDS Acife_2289 NC_015942.1 2268381 2268833 R KEGG: hoh:Hoch_2836 MerR family transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator complement(2268381..2268833) Acidithiobacillus ferrivorans SS3 11043108 YP_004784727.1 CDS Acife_2290 NC_015942.1 2268979 2270631 R KEGG: tbd:Tbd_1341 putative mercuric reductase; TIGRFAM: Mercuric reductase MerA; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; mercuric reductase complement(2268979..2270631) Acidithiobacillus ferrivorans SS3 11043109 YP_004784728.1 CDS Acife_2291 NC_015942.1 2270664 2270804 R hypothetical protein complement(2270664..2270804) Acidithiobacillus ferrivorans SS3 11043110 YP_004784729.1 CDS Acife_2292 NC_015942.1 2271169 2273433 D KEGG: afr:AFE_1652 oxidoreductase alpha (molybdopterin) subunit; TIGRFAM: Oxidoreductase alpha (molybdopterin) subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region; oxidoreductase alpha (molybdopterin) subunit 2271169..2273433 Acidithiobacillus ferrivorans SS3 11043111 YP_004784730.1 CDS Acife_2293 NC_015942.1 2273408 2273704 D KEGG: afr:AFE_1653 hypothetical protein; hypothetical protein 2273408..2273704 Acidithiobacillus ferrivorans SS3 11043112 YP_004784731.1 CDS Acife_2294 NC_015942.1 2273674 2274513 D TIGRFAM: Formate dehydrogenase, subunit FdhD; HAMAP: Protein fdhD; KEGG: afr:AFE_1654 formate dehydrogenase family accessory protein FdhD; PFAM: Formate dehydrogenase, subunit FdhD; protein fdhD 2273674..2274513 Acidithiobacillus ferrivorans SS3 11043113 YP_004784732.1 CDS Acife_2295 NC_015942.1 2274557 2275666 D KEGG: gvi:glr4425 glutathione dependent formaldehyde dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2274557..2275666 Acidithiobacillus ferrivorans SS3 11043114 YP_004784733.1 CDS Acife_2296 NC_015942.1 2275783 2276565 D PFAM: Protein of unknown function DUF347; KEGG: afr:AFE_2330 hypothetical protein; hypothetical protein 2275783..2276565 Acidithiobacillus ferrivorans SS3 11043115 YP_004784734.1 CDS Acife_2297 NC_015942.1 2277493 2278164 D KEGG: yen:YE1183 hypothetical protein; hypothetical protein 2277493..2278164 Acidithiobacillus ferrivorans SS3 11043117 YP_004784735.1 CDS Acife_2298 NC_015942.1 2278161 2278955 D KEGG: pag:PLES_13401 hypotjetical protein; hypotjetical protein 2278161..2278955 Acidithiobacillus ferrivorans SS3 11044460 YP_004784736.1 CDS Acife_2300 NC_015942.1 2279513 2280739 D KEGG: rba:RB818 reverse transcriptase/maturase; manually curated; PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; RNA-directed DNA polymerase 2279513..2280739 Acidithiobacillus ferrivorans SS3 11043119 YP_004784737.1 CDS Acife_2301 NC_015942.1 2280752 2281075 D PFAM: Transposase IS3/IS911; KEGG: tin:Tint_3219 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2280752..2281075 Acidithiobacillus ferrivorans SS3 11044461 YP_004784738.1 CDS Acife_2302 NC_015942.1 2281072 2281980 D PFAM: Integrase, catalytic core; KEGG: tin:Tint_3218 integrase catalytic region; integrase catalytic subunit 2281072..2281980 Acidithiobacillus ferrivorans SS3 11043120 YP_004784739.1 CDS Acife_2303 NC_015942.1 2282072 2283907 D PFAM: Protein of unknown function DUF262; Protein of unknown function DUF1524 RloF; KEGG: drm:Dred_1817 hypothetical protein; hypothetical protein 2282072..2283907 Acidithiobacillus ferrivorans SS3 11043121 YP_004784740.1 CDS Acife_2305 NC_015942.1 2284077 2288036 D KEGG: pna:Pnap_4606 superfamily I DNA/RNA helicase; superfamily I DNA/RNA helicase 2284077..2288036 Acidithiobacillus ferrivorans SS3 11043122 YP_004784741.1 CDS Acife_2306 NC_015942.1 2288033 2290441 D SMART: Nucleotide binding protein, PINc; KEGG: pna:Pnap_4605 nucleotide binding protein, PINc; nucleotide binding protein PINc 2288033..2290441 Acidithiobacillus ferrivorans SS3 11044463 YP_004784742.1 CDS Acife_2307 NC_015942.1 2290446 2291591 D KEGG: pna:Pnap_4604 hypothetical protein; hypothetical protein 2290446..2291591 Acidithiobacillus ferrivorans SS3 11043123 YP_004784743.1 CDS Acife_2308 NC_015942.1 2291588 2293450 D KEGG: pna:Pnap_4603 ATPase; PFAM: ATPase associated with various cellular activities, AAA-2; SMART: ATPase, AAA+ type, core; ATPase AAA-2 domain-containing protein 2291588..2293450 Acidithiobacillus ferrivorans SS3 11043124 YP_004784744.1 CDS Acife_2309 NC_015942.1 2293455 2294039 D KEGG: pna:Pnap_4602 radical SAM domain-containing protein; radical SAM domain-containing protein 2293455..2294039 Acidithiobacillus ferrivorans SS3 11043125 YP_004784745.1 CDS Acife_2310 NC_015942.1 2294261 2295289 D PFAM: Radical SAM; KEGG: pau:PA14_03340 hypothetical protein; radical SAM domain-containing protein 2294261..2295289 Acidithiobacillus ferrivorans SS3 11044464 YP_004784746.1 CDS Acife_2311 NC_015942.1 2295286 2296152 D TIGRFAM: Histidinol phosphate phosphatase, HisJ; PFAM: PHP, C-terminal; KEGG: pau:PA14_03330 hypothetical protein; SMART: Polymerase/histidinol phosphatase, N-terminal; histidinol phosphate phosphatase HisJ family 2295286..2296152 Acidithiobacillus ferrivorans SS3 11043126 YP_004784747.1 CDS Acife_2312 NC_015942.1 2296149 2297279 D KEGG: pau:PA14_03320 hypothetical protein; hypothetical protein 2296149..2297279 Acidithiobacillus ferrivorans SS3 11043127 YP_004784748.1 CDS Acife_2313 NC_015942.1 2297831 2299354 D PFAM: Integrase, catalytic core; KEGG: bxe:Bxe_A1791 putative transposase catalytic subunit; integrase catalytic subunit 2297831..2299354 Acidithiobacillus ferrivorans SS3 11043128 YP_004784749.1 CDS Acife_2314 NC_015942.1 2299366 2300151 D KEGG: afr:AFE_2413 transposase, degenerate; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 2299366..2300151 Acidithiobacillus ferrivorans SS3 11043129 YP_004784750.1 CDS Acife_2315 NC_015942.1 2300227 2300472 R KEGG: pau:PA14_03310 hypothetical protein; hypothetical protein complement(2300227..2300472) Acidithiobacillus ferrivorans SS3 11043130 YP_004784751.1 CDS Acife_2316 NC_015942.1 2300714 2302882 D KEGG: pau:PA14_03310 hypothetical protein; hypothetical protein 2300714..2302882 Acidithiobacillus ferrivorans SS3 11043131 YP_004784752.1 CDS Acife_2317 NC_015942.1 2302908 2304122 D PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: cph:Cpha266_2270 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 2302908..2304122 Acidithiobacillus ferrivorans SS3 11043132 YP_004784753.1 CDS Acife_2318 NC_015942.1 2304667 2305104 D hypothetical protein 2304667..2305104 Acidithiobacillus ferrivorans SS3 11043133 YP_004784754.1 CDS Acife_2319 NC_015942.1 2305202 2306905 D PFAM: Transposase, IS4-like; KEGG: eba:p2A221 transposase; transposase IS4 family protein 2305202..2306905 Acidithiobacillus ferrivorans SS3 11044465 YP_004784755.1 CDS Acife_2320 NC_015942.1 2307076 2307342 R hypothetical protein complement(2307076..2307342) Acidithiobacillus ferrivorans SS3 11043134 YP_004784756.1 CDS Acife_2321 NC_015942.1 2307439 2308713 R KEGG: rpx:Rpdx1_2916 hypothetical protein; hypothetical protein complement(2307439..2308713) Acidithiobacillus ferrivorans SS3 11044466 YP_004784757.1 CDS Acife_2322 NC_015942.1 2308847 2310154 R KEGG: afe:Lferr_1430 hypothetical protein; hypothetical protein complement(2308847..2310154) Acidithiobacillus ferrivorans SS3 11043135 YP_004784758.1 CDS Acife_2323 NC_015942.1 2310449 2311774 R PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; KEGG: dar:Daro_3822 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase complement(2310449..2311774) Acidithiobacillus ferrivorans SS3 11043136 YP_004784759.1 CDS Acife_2324 NC_015942.1 2312603 2313124 D hypothetical protein 2312603..2313124 Acidithiobacillus ferrivorans SS3 11043137 YP_004784760.1 CDS Acife_2325 NC_015942.1 2313121 2315640 D hypothetical protein 2313121..2315640 Acidithiobacillus ferrivorans SS3 11043138 YP_004784761.1 CDS Acife_2326 NC_015942.1 2315627 2316175 D PFAM: PilT protein, N-terminal; PilT protein domain-containing protein 2315627..2316175 Acidithiobacillus ferrivorans SS3 11043139 YP_004784762.1 CDS Acife_2329 NC_015942.1 2318768 2319790 D KEGG: sbl:Sbal_4350 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core; integrase catalytic subunit 2318768..2319790 Acidithiobacillus ferrivorans SS3 11043142 YP_004784763.1 CDS Acife_2330 NC_015942.1 2319952 2321475 D PFAM: Transposase, IS4-like; KEGG: afe:Lferr_1749 hypothetical protein; transposase IS4 family protein 2319952..2321475 Acidithiobacillus ferrivorans SS3 11043143 YP_004784764.1 CDS Acife_2331 NC_015942.1 2321420 2321563 R hypothetical protein complement(2321420..2321563) Acidithiobacillus ferrivorans SS3 11043144 YP_004784765.1 CDS Acife_2332 NC_015942.1 2321556 2322533 R PFAM: Integrase, catalytic core, phage; KEGG: lch:Lcho_0776 integrase family protein; integrase family protein complement(2321556..2322533) Acidithiobacillus ferrivorans SS3 11044467 YP_004784766.1 CDS Acife_2334 NC_015942.1 2323336 2324496 D KEGG: afr:AFE_2785 hypothetical protein; hypothetical protein 2323336..2324496 Acidithiobacillus ferrivorans SS3 11043146 YP_004784767.1 CDS Acife_2337 NC_015942.1 2325848 2326897 D PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; KEGG: afr:AFE_0846 alcohol dehydrogenase, zinc-containing; Alcohol dehydrogenase GroES domain-containing protein 2325848..2326897 Acidithiobacillus ferrivorans SS3 11043149 YP_004784768.1 CDS Acife_2338 NC_015942.1 2327248 2328423 D PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: pla:Plav_1952 Rieske (2Fe-2S) domain-containing protein; Rieske (2Fe-2S) iron-sulfur domain-containing protein 2327248..2328423 Acidithiobacillus ferrivorans SS3 11044468 YP_004784769.1 CDS Acife_2339 NC_015942.1 2328816 2329595 D KEGG: tcx:Tcr_1803 beta-lactamase-like; beta-lactamase-like protein 2328816..2329595 Acidithiobacillus ferrivorans SS3 11043150 YP_004784770.1 CDS Acife_2340 NC_015942.1 2329625 2330365 D PFAM: Creatininase; KEGG: dar:Daro_0078 creatininase; Creatininase 2329625..2330365 Acidithiobacillus ferrivorans SS3 11043151 YP_004784771.1 CDS Acife_2341 NC_015942.1 2330404 2331765 D KEGG: slt:Slit_0094 glutamine synthetase, type III; TIGRFAM: Glutamine synthetase, type III; PFAM: Glutamine synthetase, catalytic region; glutamine synthetase, type III 2330404..2331765 Acidithiobacillus ferrivorans SS3 11043152 YP_004784772.1 CDS Acife_2342 NC_015942.1 2331848 2332231 D KEGG: bav:BAV0701 lactoylglutathione lyase; TIGRFAM: Glyoxalase I; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2331848..2332231 Acidithiobacillus ferrivorans SS3 11043153 YP_004784773.1 CDS Acife_2343 NC_015942.1 2332523 2333563 D PFAM: Transposase, IS116/IS110/IS902; KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 2332523..2333563 Acidithiobacillus ferrivorans SS3 11044469 YP_004784774.1 CDS Acife_2344 NC_015942.1 2333648 2333863 D KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein; hypothetical protein 2333648..2333863 Acidithiobacillus ferrivorans SS3 11043154 YP_004784775.1 CDS Acife_2346 NC_015942.1 2334701 2335465 R PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: pth:PTH_2894 dehydrogenases with different specificities; short-chain dehydrogenase/reductase SDR complement(2334701..2335465) Acidithiobacillus ferrivorans SS3 11043155 YP_004784776.1 CDS Acife_2347 NC_015942.1 2335744 2336946 R PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: pla:Plav_1952 Rieske (2Fe-2S) domain-containing protein; Rieske (2Fe-2S) iron-sulfur domain-containing protein complement(2335744..2336946) Acidithiobacillus ferrivorans SS3 11043156 YP_004784777.1 CDS Acife_2348 NC_015942.1 2337480 2338520 D PFAM: Transposase, IS116/IS110/IS902; KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 2337480..2338520 Acidithiobacillus ferrivorans SS3 11044471 YP_004784778.1 CDS Acife_2349 NC_015942.1 2338871 2339200 D KEGG: afr:AFE_1709 ISAfe4, tranposase orf1; ISAfe4, tranposase orf1 2338871..2339200 Acidithiobacillus ferrivorans SS3 11043157 YP_004784779.1 CDS Acife_2350 NC_015942.1 2339191 2339538 D PFAM: Transposase (putative), IS66 Orf2 like; KEGG: afe:Lferr_1327 IS66 Orf2 family protein; IS66 Orf2 family protein 2339191..2339538 Acidithiobacillus ferrivorans SS3 11043158 YP_004784780.1 CDS Acife_2354 NC_015942.1 2342395 2343351 R PFAM: Protein of unknown function DUF6, transmembrane; KEGG: amv:ACMV_06240 hypothetical protein; hypothetical protein complement(2342395..2343351) Acidithiobacillus ferrivorans SS3 11044472 YP_004784781.1 CDS Acife_2355 NC_015942.1 2343638 2344534 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: afr:AFE_3291 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase complement(2343638..2344534) Acidithiobacillus ferrivorans SS3 11043162 YP_004784782.1 CDS Acife_2356 NC_015942.1 2344775 2345707 R PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; KEGG: bur:Bcep18194_C7699 ferredoxin; ferredoxin complement(2344775..2345707) Acidithiobacillus ferrivorans SS3 11043163 YP_004784783.1 CDS Acife_2359 NC_015942.1 2347487 2348056 R PFAM: Flavodoxin-like fold; KEGG: gmc:GY4MC1_1805 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) complement(2347487..2348056) Acidithiobacillus ferrivorans SS3 11044473 YP_004784784.1 CDS Acife_2360 NC_015942.1 2348158 2349603 R PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: apt:APA01_41980 cytosine/purines/uracil/thiamine/allantoin transporter; cytosine/purines uracil thiamine allantoin permease complement(2348158..2349603) Acidithiobacillus ferrivorans SS3 11043166 YP_004784785.1 CDS Acife_2361 NC_015942.1 2350250 2351278 D PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: afr:AFE_3183 ISAfe1, transposase; transposase IS116/IS110/IS902 family protein 2350250..2351278 Acidithiobacillus ferrivorans SS3 11043167 YP_004784786.1 CDS Acife_2363 NC_015942.1 2353010 2353777 R hypothetical protein complement(2353010..2353777) Acidithiobacillus ferrivorans SS3 11044474 YP_004784787.1 CDS Acife_2364 NC_015942.1 2354011 2354292 D hypothetical protein 2354011..2354292 Acidithiobacillus ferrivorans SS3 11043169 YP_004784788.1 CDS Acife_2365 NC_015942.1 2355032 2355931 D KEGG: sea:SeAg_B2096 DNA-binding prophage protein; DNA-binding prophage protein 2355032..2355931 Acidithiobacillus ferrivorans SS3 11044475 YP_004784789.1 CDS Acife_2366 NC_015942.1 2356272 2359943 R PFAM: RecF/RecN/SMC protein, N-terminal; KEGG: neu:NE1392 ABC transporter ATPase; SMC domain-containing protein complement(2356272..2359943) Acidithiobacillus ferrivorans SS3 11043170 YP_004784790.1 CDS Acife_2367 NC_015942.1 2359955 2361184 R KEGG: maq:Maqu_0567 nuclease SbcCD, D subunit; TIGRFAM: Exonuclease SbcD; PFAM: Metallophosphoesterase; nuclease SbcCD, D subunit complement(2359955..2361184) Acidithiobacillus ferrivorans SS3 11043171 YP_004784791.1 CDS Acife_2368 NC_015942.1 2361379 2362011 D PFAM: Protein of unknown function DUF1819, putative inner membrane; KEGG: cpb:Cphamn1_1682 hypothetical protein; hypothetical protein 2361379..2362011 Acidithiobacillus ferrivorans SS3 11044476 YP_004784792.1 CDS Acife_2369 NC_015942.1 2362008 2362664 D PFAM: Protein of unknown function DUF1788; KEGG: cpb:Cphamn1_1681 hypothetical protein; hypothetical protein 2362008..2362664 Acidithiobacillus ferrivorans SS3 11044477 YP_004784793.1 CDS Acife_2370 NC_015942.1 2362677 2366216 D KEGG: cpb:Cphamn1_1680 hypothetical protein; hypothetical protein 2362677..2366216 Acidithiobacillus ferrivorans SS3 11043172 YP_004784794.1 CDS Acife_2371 NC_015942.1 2366230 2368053 D KEGG: cpb:Cphamn1_1677 hypothetical protein; hypothetical protein 2366230..2368053 Acidithiobacillus ferrivorans SS3 11043173 YP_004784795.1 CDS Acife_2372 NC_015942.1 2368053 2369501 D PFAM: ATPase associated with various cellular activities, AAA-4; KEGG: gca:Galf_0893 putative transcriptional regulator; putative transcriptional regulator 2368053..2369501 Acidithiobacillus ferrivorans SS3 11043174 YP_004784796.1 CDS Acife_2373 NC_015942.1 2369501 2371273 D KEGG: cpb:Cphamn1_1677 hypothetical protein; hypothetical protein 2369501..2371273 Acidithiobacillus ferrivorans SS3 11043175 YP_004784797.1 CDS Acife_2374 NC_015942.1 2371294 2372460 D PFAM: RecF/RecN/SMC protein, N-terminal; KEGG: ddc:Dd586_0435 SMC domain-containing protein; SMC domain-containing protein 2371294..2372460 Acidithiobacillus ferrivorans SS3 11044478 YP_004784798.1 CDS Acife_2375 NC_015942.1 2372457 2373113 D KEGG: ddc:Dd586_0434 hypothetical protein; hypothetical protein 2372457..2373113 Acidithiobacillus ferrivorans SS3 11043176 YP_004784799.1 CDS Acife_2376 NC_015942.1 2373113 2375620 D KEGG: dvu:DVU2020 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02687; PFAM: PglZ domain; hypothetical protein 2373113..2375620 Acidithiobacillus ferrivorans SS3 11043177 YP_004784800.1 CDS Acife_2377 NC_015942.1 2375643 2377751 D TIGRFAM: Conserved hypothetical protein CHP02688; KEGG: cpb:Cphamn1_1675 hypothetical protein; hypothetical protein 2375643..2377751 Acidithiobacillus ferrivorans SS3 11044479 YP_004784801.1 CDS Acife_2378 NC_015942.1 2377821 2378024 R KEGG: afe:Lferr_2037 hypothetical protein; hypothetical protein complement(2377821..2378024) Acidithiobacillus ferrivorans SS3 11043178 YP_004784802.1 CDS Acife_2379 NC_015942.1 2378111 2378416 R hypothetical protein complement(2378111..2378416) Acidithiobacillus ferrivorans SS3 11043179 YP_004784803.1 CDS Acife_2381 NC_015942.1 2379046 2380098 R PFAM: Integrase, catalytic core, phage; KEGG: dds:Ddes_0438 hypothetical protein; integrase family protein complement(2379046..2380098) Acidithiobacillus ferrivorans SS3 11043180 YP_004784804.1 CDS Acife_2382 NC_015942.1 2380341 2382230 R KEGG: afe:Lferr_1970 RNA polymerase sigma-70 subunit RpoD; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, non-essential region; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 subunit RpoD complement(2380341..2382230) Acidithiobacillus ferrivorans SS3 11043181 YP_004784805.1 CDS Acife_2383 NC_015942.1 2382342 2384084 R KEGG: afr:AFE_2337 DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; DNA primase, DnaB-helicase binding domain; DNA primase complement(2382342..2384084) Acidithiobacillus ferrivorans SS3 11043182 YP_004784806.1 CDS Acife_2384 NC_015942.1 2384088 2386424 R KEGG: afr:AFE_2338 MutS2 family protein; PFAM: DNA mismatch repair protein MutS, C-terminal; Smr protein/MutS2 C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; Smr protein/MutS2 C-terminal; DNA mismatch repair protein MutS domain-containing protein complement(2384088..2386424) Acidithiobacillus ferrivorans SS3 11043183 YP_004784807.1 CDS Acife_2385 NC_015942.1 2386424 2386870 R KEGG: afr:AFE_2339 GatB/YqeY domain protein; GatB/YqeY domain-containing protein complement(2386424..2386870) Acidithiobacillus ferrivorans SS3 11043184 YP_004784808.1 CDS Acife_2386 NC_015942.1 2386870 2387154 R TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: afr:AFE_2340 30S ribosomal protein S21; PFAM: Ribosomal protein S21; 30S ribosomal protein S21 complement(2386870..2387154) Acidithiobacillus ferrivorans SS3 11043185 YP_004784809.1 CDS Acife_2387 NC_015942.1 2387376 2388233 D KEGG: afr:AFE_2342 RNA polymerase sigm-70 factor family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; RNA polymerase sigma-32 subunit RpoH 2387376..2388233 Acidithiobacillus ferrivorans SS3 11044482 YP_004784810.1 CDS Acife_2388 NC_015942.1 2388200 2388823 R TIGRFAM: Ham1-like protein; HAMAP: Nucleoside-triphosphatase rdgB; KEGG: afr:AFE_2341 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; PFAM: Ham1-like protein; nucleoside-triphosphatase rdgB complement(2388200..2388823) Acidithiobacillus ferrivorans SS3 11043186 YP_004784811.1 CDS Acife_2389 NC_015942.1 2388820 2389548 R TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; HAMAP: Ribonuclease phosphorolytic, bacterial-type; KEGG: afr:AFE_2343 ribonuclease PH; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; ribonuclease PH complement(2388820..2389548) Acidithiobacillus ferrivorans SS3 11043187 YP_004784812.1 CDS Acife_2390 NC_015942.1 2389678 2390172 D KEGG: afr:AFE_2344 cyclic nucleotide-binding domain protein; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; cyclic nucleotide-binding protein 2389678..2390172 Acidithiobacillus ferrivorans SS3 11043188 YP_004784813.1 CDS Acife_2391 NC_015942.1 2390182 2390736 R KEGG: afr:AFE_2345 ATP-dependent protease La domain protein; PFAM: Peptidase S16, lon N-terminal; SMART: Peptidase S16, lon N-terminal; peptidase S16 lon domain-containing protein complement(2390182..2390736) Acidithiobacillus ferrivorans SS3 11043189 YP_004784814.1 CDS Acife_2392 NC_015942.1 2390762 2391919 D TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; KEGG: afr:AFE_2346 oxygen-independent coproporphyrinogen III oxidase, putative; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 2390762..2391919 Acidithiobacillus ferrivorans SS3 11043190 YP_004784815.1 CDS Acife_2393 NC_015942.1 2391934 2392245 R KEGG: afr:AFE_2347 hypothetical protein; hypothetical protein complement(2391934..2392245) Acidithiobacillus ferrivorans SS3 11043191 YP_004784816.1 CDS Acife_2394 NC_015942.1 2392269 2393063 D SMART: RNA-binding S4; manually curated; KEGG: afe:Lferr_1982 pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; pseudouridine synthase Rsu 2392269..2393063 Acidithiobacillus ferrivorans SS3 11043192 YP_004784817.1 CDS Acife_2395 NC_015942.1 2393295 2394821 D KEGG: afr:AFE_2349 multidrug resistance protein; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1; EmrB/QacA subfamily drug resistance transporter 2393295..2394821 Acidithiobacillus ferrivorans SS3 11043193 YP_004784818.1 CDS Acife_2396 NC_015942.1 2394832 2395785 R PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; KEGG: afr:AFE_2350 D-alanyl-D-alanine carboxypeptidase, putative; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 complement(2394832..2395785) Acidithiobacillus ferrivorans SS3 11044483 YP_004784819.1 CDS Acife_2397 NC_015942.1 2395952 2396713 D PFAM: Protein of unknown function DUF81; KEGG: afr:AFE_2351 hypothetical protein; hypothetical protein 2395952..2396713 Acidithiobacillus ferrivorans SS3 11043194 YP_004784820.1 CDS Acife_2398 NC_015942.1 2396729 2397736 D PFAM: Methyltransferase type 11; KEGG: afr:AFE_2352 hypothetical protein; type 11 methyltransferase 2396729..2397736 Acidithiobacillus ferrivorans SS3 11043195 YP_004784821.1 CDS Acife_2400 NC_015942.1 2398518 2398943 R PFAM: PilT protein, N-terminal; KEGG: lch:Lcho_4334 PilT domain-containing protein; PilT protein domain-containing protein complement(2398518..2398943) Acidithiobacillus ferrivorans SS3 11043197 YP_004784822.1 CDS Acife_2401 NC_015942.1 2398940 2399188 R KEGG: nwa:Nwat_2445 Arc domain-/DNA-binding domain-containing protein; Arc domain-/DNA-binding domain-containing protein complement(2398940..2399188) Acidithiobacillus ferrivorans SS3 11044485 YP_004784823.1 CDS Acife_2403 NC_015942.1 2399853 2400176 D KEGG: avn:Avin_52410 hypothetical protein; hypothetical protein 2399853..2400176 Acidithiobacillus ferrivorans SS3 11043199 YP_004784824.1 CDS Acife_2404 NC_015942.1 2400243 2402981 D KEGG: geo:Geob_2869 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; type III restriction protein res subunit 2400243..2402981 Acidithiobacillus ferrivorans SS3 11043200 YP_004784825.1 CDS Acife_2405 NC_015942.1 2403026 2404114 D KEGG: mca:MCA1889 hypothetical protein; hypothetical protein 2403026..2404114 Acidithiobacillus ferrivorans SS3 11043201 YP_004784826.1 CDS Acife_2406 NC_015942.1 2404212 2408063 R KEGG: afr:AFE_2354 phosphoribosylformylglycinamidine synthase; TIGRFAM: Phosphoribosylformylglycinamidine synthase, eukaryote/proteobacteria; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; phosphoribosylformylglycinamidine synthase complement(2404212..2408063) Acidithiobacillus ferrivorans SS3 11043202 YP_004784827.1 CDS Acife_2407 NC_015942.1 2408134 2408856 R TIGRFAM: SAICAR synthetase; HAMAP: Phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: afr:AFE_2355 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(2408134..2408856) Acidithiobacillus ferrivorans SS3 11044486 YP_004784828.1 CDS Acife_2408 NC_015942.1 2408853 2410160 R KEGG: afr:AFE_2356 adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; PFAM: Fumarate lyase; Adenylosuccinate lyase, C-terminal; adenylosuccinate lyase complement(2408853..2410160) Acidithiobacillus ferrivorans SS3 11044487 YP_004784829.1 CDS Acife_2409 NC_015942.1 2410157 2411284 R KEGG: afr:AFE_2357 lipoprotein, putative; lipoprotein complement(2410157..2411284) Acidithiobacillus ferrivorans SS3 11043203 YP_004784830.1 CDS Acife_2410 NC_015942.1 2411322 2412197 R TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: afr:AFE_2358 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase; dihydrodipicolinate synthase complement(2411322..2412197) Acidithiobacillus ferrivorans SS3 11043204 YP_004784831.1 CDS Acife_2411 NC_015942.1 2412480 2413133 R KEGG: afr:AFE_2360 channel protein, hemolysin III family; TIGRFAM: HylII; PFAM: Hly-III related; hemolysin III family channel protein complement(2412480..2413133) Acidithiobacillus ferrivorans SS3 11043206 YP_004784832.1 CDS Acife_2412 NC_015942.1 2413198 2414529 R KEGG: afr:AFE_2361 N-acetylmuramoyl-L-alanine amidase, putative; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; cell wall hydrolase/autolysin complement(2413198..2414529) Acidithiobacillus ferrivorans SS3 11044488 YP_004784833.1 CDS Acife_2413 NC_015942.1 2414574 2414999 R KEGG: afr:AFE_2362 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; thioredoxin complement(2414574..2414999) Acidithiobacillus ferrivorans SS3 11044489 YP_004784834.1 CDS Acife_2414 NC_015942.1 2415036 2415320 R KEGG: afr:AFE_2363 glutaredoxin 3; TIGRFAM: Glutaredoxin, GrxC; PFAM: Glutaredoxin; glutaredoxin 3 complement(2415036..2415320) Acidithiobacillus ferrivorans SS3 11043207 YP_004784835.1 CDS Acife_2415 NC_015942.1 2415323 2415748 R KEGG: afr:AFE_2364 rhodanese-like domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; rhodanese-like protein complement(2415323..2415748) Acidithiobacillus ferrivorans SS3 11043208 YP_004784836.1 CDS Acife_2416 NC_015942.1 2415752 2415973 R KEGG: afr:AFE_2365 hypothetical protein; hypothetical protein complement(2415752..2415973) Acidithiobacillus ferrivorans SS3 11043209 YP_004784837.1 CDS Acife_2417 NC_015942.1 2415980 2419255 R PFAM: Acriflavin resistance protein; KEGG: afr:AFE_2366 transporter, AcrB/AcrD/AcrF family; acriflavin resistance protein complement(2415980..2419255) Acidithiobacillus ferrivorans SS3 11043210 YP_004784838.1 CDS Acife_2418 NC_015942.1 2419248 2420330 R KEGG: afr:AFE_2367 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit complement(2419248..2420330) Acidithiobacillus ferrivorans SS3 11043211 YP_004784839.1 CDS Acife_2419 NC_015942.1 2420327 2421748 R PFAM: Outer membrane efflux protein; KEGG: afr:AFE_2368 outer membrane efflux protein; outer membrane efflux protein complement(2420327..2421748) Acidithiobacillus ferrivorans SS3 11043212 YP_004784840.1 CDS Acife_2420 NC_015942.1 2421858 2422088 D hypothetical protein 2421858..2422088 Acidithiobacillus ferrivorans SS3 11043213 YP_004784841.1 CDS Acife_2421 NC_015942.1 2422016 2422318 R KEGG: afr:AFE_2369 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; regulatory protein ArsR complement(2422016..2422318) Acidithiobacillus ferrivorans SS3 11043214 YP_004784842.1 CDS Acife_2422 NC_015942.1 2422618 2424090 R KEGG: afr:AFE_2383 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related; UbiD family decarboxylase complement(2422618..2424090) Acidithiobacillus ferrivorans SS3 11043216 YP_004784843.1 CDS Acife_2423 NC_015942.1 2424115 2424987 R KEGG: afr:AFE_2384 hypothetical protein; hypothetical protein complement(2424115..2424987) Acidithiobacillus ferrivorans SS3 11044490 YP_004784844.1 CDS Acife_2424 NC_015942.1 2425000 2425392 R PFAM: Sterol-binding; KEGG: afr:AFE_2385 SCP-2 sterol transfer family protein; Sterol-binding domain-containing protein complement(2425000..2425392) Acidithiobacillus ferrivorans SS3 11044491 YP_004784845.1 CDS Acife_2425 NC_015942.1 2425510 2426259 R PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: afr:AFE_2386 HesA/MoeB/ThiF family protein; UBA/THIF-type NAD/FAD binding protein complement(2425510..2426259) Acidithiobacillus ferrivorans SS3 11043217 YP_004784846.1 CDS Acife_2426 NC_015942.1 2426256 2427026 R KEGG: afr:AFE_2387 hydrolase, TatD family; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related; hydrolase, TatD family complement(2426256..2427026) Acidithiobacillus ferrivorans SS3 11043218 YP_004784847.1 CDS Acife_2427 NC_015942.1 2427200 2428429 D KEGG: afr:AFE_2388 2-octaprenyl-6-methoxyphenol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Monooxygenase, FAD-binding; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 2427200..2428429 Acidithiobacillus ferrivorans SS3 11043219 YP_004784848.1 CDS Acife_2428 NC_015942.1 2428419 2429606 D KEGG: afr:AFE_2389 2-octaprenyl-6-methoxyphenol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: FAD dependent oxidoreductase; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 2428419..2429606 Acidithiobacillus ferrivorans SS3 11043220 YP_004784849.1 CDS Acife_2429 NC_015942.1 2429618 2429881 D PFAM: Protein of unknown function DUF526; KEGG: afr:AFE_2390 hypothetical protein; hypothetical protein 2429618..2429881 Acidithiobacillus ferrivorans SS3 11044492 YP_004784850.1 CDS Acife_2430 NC_015942.1 2429885 2431396 D TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: tbd:Tbd_0237 Mg chelatase-related protein; SMART: ATPase, AAA+ type, core; Mg chelatase subunit ChlI 2429885..2431396 Acidithiobacillus ferrivorans SS3 11044493 YP_004784851.1 CDS Acife_2431 NC_015942.1 2431522 2432979 R PFAM: Catalase related subgroup; Catalase-related immune responsive; KEGG: hau:Haur_0032 catalase; catalase related subgroup domain-containing protein complement(2431522..2432979) Acidithiobacillus ferrivorans SS3 11043221 YP_004784852.1 CDS Acife_2432 NC_015942.1 2433149 2433592 R PFAM: Sel1-like; KEGG: afr:AFE_2513 hypothetical protein; Sel1 domain-containing protein repeat-containing protein complement(2433149..2433592) Acidithiobacillus ferrivorans SS3 11043222 YP_004784853.1 CDS Acife_2433 NC_015942.1 2433617 2435236 R TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; HAMAP: Peptide chain release factor 3; KEGG: afr:AFE_2514 peptide chain release factor 3; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; peptide chain release factor 3 complement(2433617..2435236) Acidithiobacillus ferrivorans SS3 11043223 YP_004784854.1 CDS Acife_2434 NC_015942.1 2435243 2435713 R KEGG: afr:AFE_2515 ribosomal-protein-alanine acetyltransferase; TIGRFAM: Ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(2435243..2435713) Acidithiobacillus ferrivorans SS3 11043224 YP_004784855.1 CDS Acife_2435 NC_015942.1 2435710 2436384 R KEGG: afr:AFE_2516 hypothetical protein; TIGRFAM: universal protein YeaZ; PFAM: Peptidase M22, glycoprotease; hypothetical protein complement(2435710..2436384) Acidithiobacillus ferrivorans SS3 11044494 YP_004784856.1 CDS Acife_2436 NC_015942.1 2436384 2438309 R SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; KEGG: afr:AFE_2517 ATP-dependent helicase, DEXD family; helicase c2 complement(2436384..2438309) Acidithiobacillus ferrivorans SS3 11044495 YP_004784857.1 CDS Acife_2437 NC_015942.1 2438379 2438735 D KEGG: afr:AFE_2519 hypothetical protein; hypothetical protein 2438379..2438735 Acidithiobacillus ferrivorans SS3 11043225 YP_004784858.1 CDS Acife_2438 NC_015942.1 2438844 2439038 D KEGG: afr:AFE_1853 hypothetical protein; hypothetical protein 2438844..2439038 Acidithiobacillus ferrivorans SS3 11043226 YP_004784859.1 CDS Acife_2439 NC_015942.1 2439025 2439273 D manually curated; KEGG: afr:AFE_1852 hypothetical protein; hypothetical protein 2439025..2439273 Acidithiobacillus ferrivorans SS3 11043227 YP_004784860.1 CDS Acife_2440 NC_015942.1 2439379 2440479 R PFAM: NLP/P60; KEGG: afr:AFE_2520 NLP/P60 family protein; NLP/P60 protein complement(2439379..2440479) Acidithiobacillus ferrivorans SS3 11043228 YP_004784861.1 CDS Acife_2441 NC_015942.1 2440588 2440737 R hypothetical protein complement(2440588..2440737) Acidithiobacillus ferrivorans SS3 11044496 YP_004784862.1 CDS Acife_2442 NC_015942.1 2440898 2441542 D KEGG: tin:Tint_0706 hypothetical protein; hypothetical protein 2440898..2441542 Acidithiobacillus ferrivorans SS3 11044497 YP_004784863.1 CDS Acife_2443 NC_015942.1 2441638 2442888 D PFAM: Carbohydrate-selective porin OprB; KEGG: afr:AFE_2522 carbohydrate-selective porin, OprB family; carbohydrate-selective porin OprB 2441638..2442888 Acidithiobacillus ferrivorans SS3 11043229 YP_004784864.1 CDS Acife_2444 NC_015942.1 2442906 2443172 D PFAM: Ferrous iron transporter, FeoA subunit; KEGG: afr:AFE_2523 FeoA family protein; FeoA family protein 2442906..2443172 Acidithiobacillus ferrivorans SS3 11043230 YP_004784865.1 CDS Acife_2445 NC_015942.1 2443169 2445517 D KEGG: afe:Lferr_2152 ferrous iron transport protein B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B, N-terminal; Nucleoside recognition; Ferrous iron transport protein B, C-terminal; ferrous iron transport protein B 2443169..2445517 Acidithiobacillus ferrivorans SS3 11043231 YP_004784866.1 CDS Acife_2446 NC_015942.1 2445514 2445846 D PFAM: FeoC like transcriptional regulator; KEGG: afr:AFE_2525 hypothetical protein; hypothetical protein 2445514..2445846 Acidithiobacillus ferrivorans SS3 11043232 YP_004784867.1 CDS Acife_2447 NC_015942.1 2446146 2447018 D KEGG: afr:AFE_2526 hydrolase, carbon-nitrogen family; TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; N-carbamoylputrescine amidase 2446146..2447018 Acidithiobacillus ferrivorans SS3 11043233 YP_004784868.1 CDS Acife_2448 NC_015942.1 2447011 2447754 D PFAM: Peptidase C26; KEGG: afr:AFE_2528 glutamine amidotransferase, class I; peptidase C26 2447011..2447754 Acidithiobacillus ferrivorans SS3 11043234 YP_004784869.1 CDS Acife_2449 NC_015942.1 2447751 2448398 R PFAM: SNARE associated Golgi protein; KEGG: afr:AFE_2527 membrane protein, DedA family; hypothetical protein complement(2447751..2448398) Acidithiobacillus ferrivorans SS3 11043235 YP_004784870.1 CDS Acife_2450 NC_015942.1 2448430 2448786 R KEGG: afr:AFE_2529 hypothetical protein; hypothetical protein complement(2448430..2448786) Acidithiobacillus ferrivorans SS3 11043236 YP_004784871.1 CDS Acife_2451 NC_015942.1 2448783 2449535 R KEGG: afr:AFE_2530 hypothetical protein; hypothetical protein complement(2448783..2449535) Acidithiobacillus ferrivorans SS3 11043237 YP_004784872.1 CDS Acife_2452 NC_015942.1 2449537 2450463 R PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_2531 transcriptional regulator, LysR family; LysR family transcriptional regulator complement(2449537..2450463) Acidithiobacillus ferrivorans SS3 11043238 YP_004784873.1 CDS Acife_2453 NC_015942.1 2450549 2451151 D KEGG: afr:AFE_2532 hypothetical protein; hypothetical protein 2450549..2451151 Acidithiobacillus ferrivorans SS3 11044498 YP_004784874.1 CDS Acife_2454 NC_015942.1 2451173 2452318 R PFAM: Aldo/keto reductase; KEGG: afr:AFE_2533 oxidoreductase, aldo/keto reductase family; aldo/keto reductase complement(2451173..2452318) Acidithiobacillus ferrivorans SS3 11044499 YP_004784875.1 CDS Acife_2455 NC_015942.1 2452315 2453529 R PFAM: Histone deacetylase superfamily; KEGG: afe:Lferr_2162 histone deacetylase superfamily; histone deacetylase superfamily complement(2452315..2453529) Acidithiobacillus ferrivorans SS3 11043239 YP_004784876.1 CDS Acife_2456 NC_015942.1 2453526 2456024 R SMART: von Willebrand factor, type A; KEGG: afe:Lferr_2163 von Willebrand factor type A; von Willebrand factor type A complement(2453526..2456024) Acidithiobacillus ferrivorans SS3 11043240 YP_004784877.1 CDS Acife_2457 NC_015942.1 2456034 2456864 R PFAM: ATPase associated with various cellular activities, AAA-5; CbbQ/NirQ/NorQ C-terminal; KEGG: afr:AFE_2536 CbbQ/NirQ/NorQ/GpvN family protein; ATPase complement(2456034..2456864) Acidithiobacillus ferrivorans SS3 11043241 YP_004784878.1 CDS Acife_2458 NC_015942.1 2456861 2457262 R KEGG: afr:AFE_2537 hypothetical protein; hypothetical protein complement(2456861..2457262) Acidithiobacillus ferrivorans SS3 11043242 YP_004784879.1 CDS Acife_2459 NC_015942.1 2457388 2457711 D KEGG: afe:Lferr_2166 hypothetical protein; hypothetical protein 2457388..2457711 Acidithiobacillus ferrivorans SS3 11043243 YP_004784880.1 CDS Acife_2460 NC_015942.1 2457770 2458147 R KEGG: afe:Lferr_2167 hypothetical protein; hypothetical protein complement(2457770..2458147) Acidithiobacillus ferrivorans SS3 11043244 YP_004784881.1 CDS Acife_2461 NC_015942.1 2458199 2459206 R PFAM: Biotin/lipoate A/B protein ligase; KEGG: afe:Lferr_2168 biotin/lipoate A/B protein ligase; biotin/lipoate A/B protein ligase complement(2458199..2459206) Acidithiobacillus ferrivorans SS3 11043245 YP_004784882.1 CDS Acife_2462 NC_015942.1 2459250 2459660 R KEGG: afr:AFE_2541 hypothetical protein; hypothetical protein complement(2459250..2459660) Acidithiobacillus ferrivorans SS3 11044500 YP_004784883.1 CDS Acife_2463 NC_015942.1 2459783 2461090 R PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: afr:AFE_2542 outer membrane protein, OMPP1/FadL/TodX family; aromatic hydrocarbon degradation membrane protein complement(2459783..2461090) Acidithiobacillus ferrivorans SS3 11043246 YP_004784884.1 CDS Acife_2464 NC_015942.1 2461338 2462474 R KEGG: afr:AFE_2543 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; radical SAM domain-containing protein complement(2461338..2462474) Acidithiobacillus ferrivorans SS3 11043247 YP_004784885.1 CDS Acife_2465 NC_015942.1 2462499 2463560 R KEGG: afr:AFE_2544 geranylgeranyl reductase family protein; TIGRFAM: Geranylgeranyl reductase, plant/prokaryotic; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; geranylgeranyl reductase complement(2462499..2463560) Acidithiobacillus ferrivorans SS3 11043248 YP_004784886.1 CDS Acife_2466 NC_015942.1 2463557 2464627 R PFAM: Biotin/lipoate A/B protein ligase; KEGG: afr:AFE_2545 lipoate-protein ligase A, putative; biotin/lipoate A/B protein ligase complement(2463557..2464627) Acidithiobacillus ferrivorans SS3 11043249 YP_004784887.1 CDS Acife_2467 NC_015942.1 2464676 2465797 R KEGG: afr:AFE_2546 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; radical SAM domain-containing protein complement(2464676..2465797) Acidithiobacillus ferrivorans SS3 11044501 YP_004784888.1 CDS Acife_2468 NC_015942.1 2465881 2466318 R KEGG: afr:AFE_2547 glycine cleavage system H protein, putative; HAMAP: Glycine cleavage H-protein; PFAM: Glycine cleavage H-protein; glycine cleavage system H protein complement(2465881..2466318) Acidithiobacillus ferrivorans SS3 11043250 YP_004784889.1 CDS Acife_2469 NC_015942.1 2466377 2466772 R KEGG: afr:AFE_2548 hypothetical protein; hypothetical protein complement(2466377..2466772) Acidithiobacillus ferrivorans SS3 11043251 YP_004784890.1 CDS Acife_2470 NC_015942.1 2466769 2467215 R PFAM: Glycine cleavage H-protein; KEGG: afr:AFE_2549 glycine cleavage system protein H, putative; glycine cleavage H-protein complement(2466769..2467215) Acidithiobacillus ferrivorans SS3 11043252 YP_004784891.1 CDS Acife_2471 NC_015942.1 2467282 2468193 R PFAM: Cysteine-rich region, CCG; KEGG: afr:AFE_2550 succinate dehydrogenase/fumarate reductase, C subunit; hypothetical protein complement(2467282..2468193) Acidithiobacillus ferrivorans SS3 11043253 YP_004784892.1 CDS Acife_2472 NC_015942.1 2468186 2468905 R KEGG: afr:AFE_2551 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein complement(2468186..2468905) Acidithiobacillus ferrivorans SS3 11043254 YP_004784893.1 CDS Acife_2473 NC_015942.1 2468929 2469747 R KEGG: afr:AFE_2552 hypothetical protein; hypothetical protein complement(2468929..2469747) Acidithiobacillus ferrivorans SS3 11043255 YP_004784894.1 CDS Acife_2474 NC_015942.1 2469737 2470792 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afr:AFE_2553 pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2469737..2470792) Acidithiobacillus ferrivorans SS3 11044502 YP_004784895.1 CDS Acife_2475 NC_015942.1 2470805 2472148 R PFAM: Cysteine-rich region, CCG; KEGG: afr:AFE_2554 heterodisulfide reductase subunit B, homolog; hypothetical protein complement(2470805..2472148) Acidithiobacillus ferrivorans SS3 11043256 YP_004784896.1 CDS Acife_2476 NC_015942.1 2472159 2472845 R KEGG: afr:AFE_2555 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein complement(2472159..2472845) Acidithiobacillus ferrivorans SS3 11043257 YP_004784897.1 CDS Acife_2477 NC_015942.1 2472909 2473379 R KEGG: afr:AFE_2556 hypothetical protein; hypothetical protein complement(2472909..2473379) Acidithiobacillus ferrivorans SS3 11043258 YP_004784898.1 CDS Acife_2478 NC_015942.1 2473424 2473654 R PFAM: SirA-like; KEGG: afr:AFE_2557 hypothetical protein; SirA-like domain-containing protein complement(2473424..2473654) Acidithiobacillus ferrivorans SS3 11043259 YP_004784899.1 CDS Acife_2479 NC_015942.1 2473775 2474107 R KEGG: afr:AFE_2558 rhodanese-like domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; rhodanese-like protein complement(2473775..2474107) Acidithiobacillus ferrivorans SS3 11044503 YP_004784900.1 CDS Acife_2480 NC_015942.1 2474208 2475236 R TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum cofactor synthesis C-terminal; Radical SAM; KEGG: afr:AFE_2559 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A complement(2474208..2475236) Acidithiobacillus ferrivorans SS3 11044504 YP_004784901.1 CDS Acife_2481 NC_015942.1 2475300 2476238 R PFAM: DMSO reductase anchor subunit (DmsC); KEGG: tkm:TK90_0146 DMSO reductase anchor subunit (DmsC); DMSO reductase anchor subunit DmsC complement(2475300..2476238) Acidithiobacillus ferrivorans SS3 11044505 YP_004784902.1 CDS Acife_2482 NC_015942.1 2476248 2476940 R PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: tbd:Tbd_0571 DMSO reductase chain B; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(2476248..2476940) Acidithiobacillus ferrivorans SS3 11044506 YP_004784903.1 CDS Acife_2483 NC_015942.1 2476959 2479817 R PFAM: Molybdopterin oxidoreductase Fe4S4 region; Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region; KEGG: tkm:TK90_0144 nitrate reductase; molybdopterin oxidoreductase Fe4S4 region complement(2476959..2479817) Acidithiobacillus ferrivorans SS3 11043260 YP_004784904.1 CDS Acife_2484 NC_015942.1 2479996 2480301 D KEGG: afr:AFE_2560 hypothetical protein; hypothetical protein 2479996..2480301 Acidithiobacillus ferrivorans SS3 11043261 YP_004784905.1 CDS Acife_2485 NC_015942.1 2480306 2480815 R KEGG: afr:AFE_2561 molybdenum cofactor biosynthesis protein C; TIGRFAM: Molybdopterin cofactor biosynthesis MoaC region; PFAM: Molybdopterin cofactor biosynthesis MoaC region; molybdenum cofactor biosynthesis protein C complement(2480306..2480815) Acidithiobacillus ferrivorans SS3 11043262 YP_004784906.1 CDS Acife_2486 NC_015942.1 2480872 2482401 D KEGG: drt:Dret_0095 phosphonate ABC transporter, periplasmic phosphonate-binding protein; hypothetical protein 2480872..2482401 Acidithiobacillus ferrivorans SS3 11043263 YP_004784907.1 CDS Acife_2487 NC_015942.1 2482398 2483972 D KEGG: afr:AFE_0026 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; nitrogen specific signal transduction histidine kinase NtrB 2482398..2483972 Acidithiobacillus ferrivorans SS3 11044507 YP_004784908.1 CDS Acife_2488 NC_015942.1 2484003 2485373 D KEGG: afr:AFE_0027 sigma-54 dependent transcriptional regulator/response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; two component sigma-54 specific Fis family transcriptional regulator 2484003..2485373 Acidithiobacillus ferrivorans SS3 11044508 YP_004784909.1 CDS Acife_2490 NC_015942.1 2486087 2486599 D KEGG: mgm:Mmc1_3716 thiosulfate-binding protein SoxY; hypothetical protein 2486087..2486599 Acidithiobacillus ferrivorans SS3 11043265 YP_004784910.1 CDS Acife_2491 NC_015942.1 2486637 2486969 D PFAM: Sulphur oxidation protein SoxZ; KEGG: aae:aq_1809 hypothetical protein; sulfur oxidation protein SoxZ 2486637..2486969 Acidithiobacillus ferrivorans SS3 11044509 YP_004784911.1 CDS Acife_2493 NC_015942.1 2487346 2487879 D PFAM: Protein of unknown function DUF302; KEGG: mgm:Mmc1_3713 hypothetical protein; hypothetical protein 2487346..2487879 Acidithiobacillus ferrivorans SS3 11044510 YP_004784912.1 CDS Acife_2494 NC_015942.1 2487898 2489625 D PFAM: 5'-Nucleotidase, C-terminal; KEGG: slt:Slit_1696 5'-nucleotidase domain protein; 5'-nucleotidase domain-containing protein 2487898..2489625 Acidithiobacillus ferrivorans SS3 11043267 YP_004784913.1 CDS Acife_2495 NC_015942.1 2489905 2490948 D KEGG: afr:AFE_2562 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl; MreB/Mrl family cell shape determining protein 2489905..2490948 Acidithiobacillus ferrivorans SS3 11043268 YP_004784914.1 CDS Acife_2496 NC_015942.1 2490973 2491812 D KEGG: afr:AFE_2563 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC; rod shape-determining protein MreC 2490973..2491812 Acidithiobacillus ferrivorans SS3 11043269 YP_004784915.1 CDS Acife_2497 NC_015942.1 2491809 2492285 D TIGRFAM: Cell shape-determining protein MreD; KEGG: afr:AFE_2564 rod shape-determining protein MreD, putative; rod shape-determining protein MreD 2491809..2492285 Acidithiobacillus ferrivorans SS3 11043270 YP_004784916.1 CDS Acife_2498 NC_015942.1 2492282 2492566 D KEGG: afr:AFE_2565 penicillin-binding protein 2; hypothetical protein 2492282..2492566 Acidithiobacillus ferrivorans SS3 11043271 YP_004784917.1 CDS Acife_2499 NC_015942.1 2492563 2493657 D KEGG: afe:Lferr_2196 rod shape-determining protein RodA; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein; rod shape-determining protein RodA 2492563..2493657 Acidithiobacillus ferrivorans SS3 11044511 YP_004784918.1 CDS Acife_2500 NC_015942.1 2493797 2494963 D PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: afr:AFE_2567 D-alanyl-D-alanine carboxypeptidase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 2493797..2494963 Acidithiobacillus ferrivorans SS3 11043272 YP_004784919.1 CDS Acife_2501 NC_015942.1 2495067 2495396 D PFAM: Protein of unknown function DUF493; KEGG: afe:Lferr_2198 hypothetical protein; hypothetical protein 2495067..2495396 Acidithiobacillus ferrivorans SS3 11043273 YP_004784920.1 CDS Acife_2502 NC_015942.1 2495393 2496031 D TIGRFAM: Octanoyltransferase; HAMAP: Octanoyltransferase; KEGG: afr:AFE_2569 lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase; Octanoyltransferase 2495393..2496031 Acidithiobacillus ferrivorans SS3 11043274 YP_004784921.1 CDS Acife_2503 NC_015942.1 2496033 2496986 D SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Lipoate synthase; KEGG: afr:AFE_2570 lipoyl synthase; HAMAP: Lipoate synthase; PFAM: Radical SAM; lipoyl synthase 2496033..2496986 Acidithiobacillus ferrivorans SS3 11043275 YP_004784922.1 CDS Acife_2504 NC_015942.1 2497007 2497804 D PFAM: Protein of unknown function DUF218; KEGG: afr:AFE_2571 hypothetical protein; hypothetical protein 2497007..2497804 Acidithiobacillus ferrivorans SS3 11043276 YP_004784923.1 CDS Acife_2505 NC_015942.1 2497838 2498926 R PFAM: YkuD domain; KEGG: afe:Lferr_2202 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein complement(2497838..2498926) Acidithiobacillus ferrivorans SS3 11044512 YP_004784924.1 CDS Acife_2506 NC_015942.1 2499040 2499471 D KEGG: afr:AFE_2573 hypothetical protein; hypothetical protein 2499040..2499471 Acidithiobacillus ferrivorans SS3 11043277 YP_004784925.1 CDS Acife_2507 NC_015942.1 2499443 2499538 D hypothetical protein 2499443..2499538 Acidithiobacillus ferrivorans SS3 11043278 YP_004784926.1 CDS Acife_2508 NC_015942.1 2499553 2501040 D KEGG: afr:AFE_2574 hypothetical protein; hypothetical protein 2499553..2501040 Acidithiobacillus ferrivorans SS3 11043279 YP_004784927.1 CDS Acife_2509 NC_015942.1 2501050 2502213 D KEGG: afr:AFE_2575 hypothetical protein; hypothetical protein 2501050..2502213 Acidithiobacillus ferrivorans SS3 11043280 YP_004784928.1 CDS Acife_2510 NC_015942.1 2502261 2502827 D KEGG: afr:AFE_2576 small GTP-binding protein; TIGRFAM: Small GTP-binding protein; PFAM: Protein of unknown function, ATP binding; small GTP-binding protein 2502261..2502827 Acidithiobacillus ferrivorans SS3 11044513 YP_004784929.1 CDS Acife_2511 NC_015942.1 2502824 2503462 D KEGG: afr:AFE_2577 hypothetical protein; hypothetical protein 2502824..2503462 Acidithiobacillus ferrivorans SS3 11043281 YP_004784930.1 CDS Acife_2512 NC_015942.1 2503513 2503875 D PFAM: Dynein light chain-related; KEGG: afr:AFE_2578 roadblock/LC7 domain protein; Roadblock/LC7 family protein 2503513..2503875 Acidithiobacillus ferrivorans SS3 11043282 YP_004784931.1 CDS Acife_2513 NC_015942.1 2503965 2504849 D TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: afr:AFE_2580 glycyl-tRNA synthetase subunit alpha; PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; glycyl-tRNA synthetase alpha subunit 2503965..2504849 Acidithiobacillus ferrivorans SS3 11043283 YP_004784932.1 CDS Acife_2514 NC_015942.1 2504836 2506920 D TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; HAMAP: Glycyl-tRNA synthetase beta subunit; KEGG: afr:AFE_2581 glycyl-tRNA synthetase, beta subunit; PFAM: Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal; glycyl-tRNA synthetase beta subunit 2504836..2506920 Acidithiobacillus ferrivorans SS3 11044514 YP_004784933.1 CDS Acife_2515 NC_015942.1 2506920 2507459 D KEGG: afr:AFE_2582 histidinol-phosphate phosphatase domain protein; TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; PFAM: Haloacid dehalogenase-like hydrolase; histidinol-phosphate phosphatase family protein 2506920..2507459 Acidithiobacillus ferrivorans SS3 11043284 YP_004784934.1 CDS Acife_2516 NC_015942.1 2507456 2508184 D KEGG: afr:AFE_2584 acyltransferase family protein; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2507456..2508184 Acidithiobacillus ferrivorans SS3 11044515 YP_004784935.1 CDS Acife_2517 NC_015942.1 2508132 2509040 R KEGG: afr:AFE_2583 alpha-L-glutamate ligase, RimK family; TIGRFAM: S6 modification enzyme RimK; PFAM: ATP-grasp fold, RimK-type; RimK family alpha-L-glutamate ligase complement(2508132..2509040) Acidithiobacillus ferrivorans SS3 11043285 YP_004784936.1 CDS Acife_2518 NC_015942.1 2509044 2509364 R KEGG: afr:AFE_2585 hypothetical protein; hypothetical protein complement(2509044..2509364) Acidithiobacillus ferrivorans SS3 11043286 YP_004784937.1 CDS Acife_2519 NC_015942.1 2509563 2510909 D PFAM: Cysteine-rich region, CCG; KEGG: afr:AFE_2554 heterodisulfide reductase subunit B, homolog; hypothetical protein 2509563..2510909 Acidithiobacillus ferrivorans SS3 11044516 YP_004784938.1 CDS Acife_2520 NC_015942.1 2511091 2511393 D KEGG: afr:AFE_2587 hypothetical protein; hypothetical protein 2511091..2511393 Acidithiobacillus ferrivorans SS3 11043287 YP_004784939.1 CDS Acife_2521 NC_015942.1 2511457 2511786 R KEGG: afr:AFE_1861 pterin-4-alpha-carbinolamine dehydratase; HAMAP: pterin-4-alpha-carbinolamine dehydratase; PFAM: Transcriptional coactivator/pterin dehydratase; pterin-4-alpha-carbinolamine dehydratase complement(2511457..2511786) Acidithiobacillus ferrivorans SS3 11043288 YP_004784940.1 CDS Acife_2522 NC_015942.1 2511869 2512576 D PFAM: Protein of unknown function DUF208; KEGG: afr:AFE_2588 hypothetical protein; hypothetical protein 2511869..2512576 Acidithiobacillus ferrivorans SS3 11044517 YP_004784941.1 CDS Acife_2523 NC_015942.1 2512764 2513336 R KEGG: afr:AFE_2589 N-acetyl-anhydromuranmyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD complement(2512764..2513336) Acidithiobacillus ferrivorans SS3 11043289 YP_004784942.1 CDS Acife_2524 NC_015942.1 2513333 2513719 R KEGG: afr:AFE_2590 thioredoxin, putative; thioredoxin complement(2513333..2513719) Acidithiobacillus ferrivorans SS3 11043290 YP_004784943.1 CDS Acife_2526 NC_015942.1 2513981 2515522 R KEGG: afr:AFE_2596 2-isopropylmalate synthase; TIGRFAM: Bacterial 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; 2-isopropylmalate synthase complement(2513981..2515522) Acidithiobacillus ferrivorans SS3 11043292 YP_004784944.1 CDS Acife_2528 NC_015942.1 2515818 2516174 R KEGG: afr:AFE_2593 hypothetical protein; hypothetical protein complement(2515818..2516174) Acidithiobacillus ferrivorans SS3 11044518 YP_004784945.1 CDS Acife_2529 NC_015942.1 2516302 2516835 R KEGG: afr:AFE_1745 hypothetical protein; hypothetical protein complement(2516302..2516835) Acidithiobacillus ferrivorans SS3 11043294 YP_004784946.1 CDS Acife_2532 NC_015942.1 2518682 2519134 R KEGG: afr:AFE_2607 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; regulatory protein MerR complement(2518682..2519134) Acidithiobacillus ferrivorans SS3 11044520 YP_004784947.1 CDS Acife_2533 NC_015942.1 2519109 2519408 R SMART: Histone-like bacterial DNA-binding protein; TIGRFAM: Integration host factor, alpha subunit; KEGG: afr:AFE_2608 integration host factor, alpha subunit; HAMAP: Integration host factor, alpha subunit; PFAM: Histone-like bacterial DNA-binding protein; integration host factor subunit alpha complement(2519109..2519408) Acidithiobacillus ferrivorans SS3 11043297 YP_004784948.1 CDS Acife_2534 NC_015942.1 2519419 2521818 R TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: afr:AFE_2609 phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase beta chain complement(2519419..2521818) Acidithiobacillus ferrivorans SS3 11043298 YP_004784949.1 CDS Acife_2535 NC_015942.1 2521828 2522850 R TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; KEGG: afr:AFE_2610 phenylalanyl-tRNA synthetase subunit alpha; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal; phenylalanyl-tRNA synthetase alpha chain complement(2521828..2522850) Acidithiobacillus ferrivorans SS3 11043299 YP_004784950.1 CDS Acife_2536 NC_015942.1 2522871 2523230 R TIGRFAM: Ribosomal protein L20; HAMAP: Ribosomal protein L20; KEGG: afr:AFE_2611 50S ribosomal protein L20; PFAM: Ribosomal protein L20; 50S ribosomal protein L20 complement(2522871..2523230) Acidithiobacillus ferrivorans SS3 11043300 YP_004784951.1 CDS Acife_2537 NC_015942.1 2523249 2523446 R TIGRFAM: Ribosomal protein L35; HAMAP: Ribosomal protein L35; KEGG: afr:AFE_2612 50S ribosomal protein L35; PFAM: Ribosomal protein L35; 50S ribosomal protein L35 complement(2523249..2523446) Acidithiobacillus ferrivorans SS3 11043301 YP_004784952.1 CDS Acife_2538 NC_015942.1 2523456 2523956 R TIGRFAM: Translation initiation factor 3; HAMAP: Translation initiation factor IF-3; KEGG: afr:AFE_2613 translation initiation factor IF-3; PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal; translation initiation factor IF-3 complement(2523456..2523956) Acidithiobacillus ferrivorans SS3 11043302 YP_004784953.1 CDS Acife_2539 NC_015942.1 2523991 2525925 R KEGG: afr:AFE_2614 threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; threonyl-tRNA synthetase complement(2523991..2525925) Acidithiobacillus ferrivorans SS3 11043303 YP_004784954.1 CDS Acife_2540 NC_015942.1 2526088 2526402 R KEGG: afr:AFE_3120 hypothetical protein; hypothetical protein complement(2526088..2526402) Acidithiobacillus ferrivorans SS3 11044521 YP_004784955.1 CDS Acife_2541 NC_015942.1 2526402 2527847 R TIGRFAM: NADH-quinone oxidoreductase, chain N; HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; KEGG: afr:AFE_2617 NADH-quinone oxidoreductase, N subunit; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NAD(P)H-quinone oxidoreductase subunit 2 complement(2526402..2527847) Acidithiobacillus ferrivorans SS3 11043305 YP_004784956.1 CDS Acife_2542 NC_015942.1 2527860 2529344 R KEGG: afr:AFE_2618 NADH-quinone oxidoreductase, M subunit; TIGRFAM: NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; proton-translocating NADH-quinone oxidoreductase subunit M complement(2527860..2529344) Acidithiobacillus ferrivorans SS3 11043306 YP_004784957.1 CDS Acife_2543 NC_015942.1 2529347 2531329 R KEGG: afe:Lferr_2246 proton-translocating NADH-quinone oxidoreductase subunit L; TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; proton-translocating NADH-quinone oxidoreductase subunit L complement(2529347..2531329) Acidithiobacillus ferrivorans SS3 11044522 YP_004784958.1 CDS Acife_2544 NC_015942.1 2531331 2531648 R KEGG: afr:AFE_2620 NADH-quinone oxidoreductase, K subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L; NAD(P)H-quinone oxidoreductase subunit 4L complement(2531331..2531648) Acidithiobacillus ferrivorans SS3 11043307 YP_004784959.1 CDS Acife_2545 NC_015942.1 2531645 2532244 R PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: afr:AFE_2621 NADH-quinone oxidoreductase, J subunit; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 complement(2531645..2532244) Acidithiobacillus ferrivorans SS3 11043308 YP_004784960.1 CDS Acife_2546 NC_015942.1 2532260 2532751 R TIGRFAM: NADH-quinone oxidoreductase, chain I; HAMAP: NADH-quinone oxidoreductase, chain I; KEGG: afr:AFE_2622 NADH dehydrogenase subunit I; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; NAD(P)H-quinone oxidoreductase subunit I complement(2532260..2532751) Acidithiobacillus ferrivorans SS3 11043309 YP_004784961.1 CDS Acife_2547 NC_015942.1 2532762 2533787 R KEGG: afr:AFE_2623 NADH-quinone oxidoreductase, H subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit 1; PFAM: NADH:ubiquinone oxidoreductase, subunit 1; NAD(P)H-quinone oxidoreductase subunit 1 complement(2532762..2533787) Acidithiobacillus ferrivorans SS3 11043310 YP_004784962.1 CDS Acife_2548 NC_015942.1 2533799 2536144 R KEGG: afr:AFE_2624 NADH-quinone oxidoreductase, G subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit G; PFAM: Molybdopterin oxidoreductase; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; NADH-quinone oxidoreductase subunit G complement(2533799..2536144) Acidithiobacillus ferrivorans SS3 11044523 YP_004784963.1 CDS Acife_2549 NC_015942.1 2536144 2537427 R KEGG: afr:AFE_2625 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; NADH-quinone oxidoreductase subunit F complement(2536144..2537427) Acidithiobacillus ferrivorans SS3 11043311 YP_004784964.1 CDS Acife_2550 NC_015942.1 2537417 2537908 R KEGG: afr:AFE_2626 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; NADH-quinone oxidoreductase subunit E complement(2537417..2537908) Acidithiobacillus ferrivorans SS3 11043312 YP_004784965.1 CDS Acife_2551 NC_015942.1 2537912 2539165 R TIGRFAM: NADH dehydrogenase I, D subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit H; KEGG: afr:AFE_2627 NADH dehydrogenase subunit D; PFAM: NADH-quinone oxidoreductase, subunit D; NAD(P)H-quinone oxidoreductase subunit H complement(2537912..2539165) Acidithiobacillus ferrivorans SS3 11043313 YP_004784966.1 CDS Acife_2552 NC_015942.1 2539149 2539757 R TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; HAMAP: NAD(P)H-quinone oxidoreductase subunit J; KEGG: afr:AFE_2628 NADH-quinone oxidoreductase, C subunit; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; NAD(P)H-quinone oxidoreductase subunit J complement(2539149..2539757) Acidithiobacillus ferrivorans SS3 11044524 YP_004784967.1 CDS Acife_2553 NC_015942.1 2539761 2540237 R TIGRFAM: NADH:ubiquinone oxidoreductase, 20kDa subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit K; KEGG: afr:AFE_2629 NADH dehydrogenase subunit B; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; NAD(P)H-quinone oxidoreductase subunit K complement(2539761..2540237) Acidithiobacillus ferrivorans SS3 11043314 YP_004784968.1 CDS Acife_2554 NC_015942.1 2540228 2540584 R KEGG: afr:AFE_2630 NADH-quinone oxidoreductase, A subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; NAD(P)H-quinone oxidoreductase subunit 3 complement(2540228..2540584) Acidithiobacillus ferrivorans SS3 11044525 YP_004784969.1 CDS Acife_2555 NC_015942.1 2540837 2541229 R KEGG: afr:AFE_2632 preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit; preprotein translocase subunit SecG complement(2540837..2541229) Acidithiobacillus ferrivorans SS3 11043316 YP_004784970.1 CDS Acife_2556 NC_015942.1 2541234 2542007 R KEGG: afr:AFE_2633 triosephosphate isomerase; TIGRFAM: Triosephosphate isomerase; PFAM: Triosephosphate isomerase; triosephosphate isomerase complement(2541234..2542007) Acidithiobacillus ferrivorans SS3 11044526 YP_004784971.1 CDS Acife_2557 NC_015942.1 2542123 2543487 R KEGG: afr:AFE_2634 phosphoglucosamine mutase; TIGRFAM: Phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; phosphoglucosamine mutase complement(2542123..2543487) Acidithiobacillus ferrivorans SS3 11043317 YP_004784972.1 CDS Acife_2558 NC_015942.1 2543571 2544410 R KEGG: afr:AFE_2635 dihydropteroate synthase; TIGRFAM: Dihydropteroate synthase; PFAM: Dihydropteroate synthase, DHPS; dihydropteroate synthase complement(2543571..2544410) Acidithiobacillus ferrivorans SS3 11043318 YP_004784973.1 CDS Acife_2559 NC_015942.1 2544407 2546329 R TIGRFAM: Peptidase M41, FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; KEGG: afr:AFE_2636 cell division protein FtsH; SMART: ATPase, AAA+ type, core; ATP-dependent metalloprotease FtsH complement(2544407..2546329) Acidithiobacillus ferrivorans SS3 11044527 YP_004784974.1 CDS Acife_2560 NC_015942.1 2546427 2547872 R PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: afr:AFE_2637 TldD protein; peptidase U62 modulator of DNA gyrase complement(2546427..2547872) Acidithiobacillus ferrivorans SS3 11043319 YP_004784975.1 CDS Acife_2561 NC_015942.1 2548214 2551066 D KEGG: afr:AFE_2638 ribonucleotide-diphosphate reductase, alpha subunit; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ATP-cone; ribonucleoside-diphosphate reductase subunit alpha 2548214..2551066 Acidithiobacillus ferrivorans SS3 11044528 YP_004784976.1 CDS Acife_2562 NC_015942.1 2551097 2552221 D PFAM: Ribonucleotide reductase; KEGG: afr:AFE_2639 ribonucleotide-diphosphate reductase subunit beta; ribonucleotide reductase 2551097..2552221 Acidithiobacillus ferrivorans SS3 11043320 YP_004784977.1 CDS Acife_2563 NC_015942.1 2552720 2553577 D KEGG: sbm:Shew185_4002 hypothetical protein; hypothetical protein 2552720..2553577 Acidithiobacillus ferrivorans SS3 11043321 YP_004784978.1 CDS Acife_2564 NC_015942.1 2553652 2554440 R KEGG: nhl:Nhal_4020 hypothetical protein; hypothetical protein complement(2553652..2554440) Acidithiobacillus ferrivorans SS3 11043322 YP_004784979.1 CDS Acife_2565 NC_015942.1 2554824 2555333 D KEGG: bac:BamMC406_6734 hypothetical protein; hypothetical protein 2554824..2555333 Acidithiobacillus ferrivorans SS3 11043323 YP_004784980.1 CDS Acife_2566 NC_015942.1 2555448 2556416 D hypothetical protein 2555448..2556416 Acidithiobacillus ferrivorans SS3 11043324 YP_004784981.1 CDS Acife_2567 NC_015942.1 2556577 2557152 D KEGG: kpe:KPK_A0235 hypothetical protein; hypothetical protein 2556577..2557152 Acidithiobacillus ferrivorans SS3 11043325 YP_004784982.1 CDS Acife_2568 NC_015942.1 2557263 2557535 D hypothetical protein 2557263..2557535 Acidithiobacillus ferrivorans SS3 11043326 YP_004784983.1 CDS Acife_2569 NC_015942.1 2558150 2561737 D KEGG: cak:Caul_5232 hypothetical protein; hypothetical protein 2558150..2561737 Acidithiobacillus ferrivorans SS3 11043327 YP_004784984.1 CDS Acife_2570 NC_015942.1 2562477 2563319 R KEGG: afr:AFE_3189 hypothetical protein; hypothetical protein complement(2562477..2563319) Acidithiobacillus ferrivorans SS3 11044529 YP_004784985.1 CDS Acife_2571 NC_015942.1 2563617 2563805 R hypothetical protein complement(2563617..2563805) Acidithiobacillus ferrivorans SS3 11044530 YP_004784986.1 CDS Acife_2572 NC_015942.1 2563944 2564981 R KEGG: psa:PST_0584 hypothetical protein; hypothetical protein complement(2563944..2564981) Acidithiobacillus ferrivorans SS3 11043328 YP_004784987.1 CDS Acife_2573 NC_015942.1 2565194 2565472 D hypothetical protein 2565194..2565472 Acidithiobacillus ferrivorans SS3 11043329 YP_004784988.1 CDS Acife_2574 NC_015942.1 2565588 2566319 D KEGG: bgf:BC1003_0016 hypothetical protein; hypothetical protein 2565588..2566319 Acidithiobacillus ferrivorans SS3 11043330 YP_004784989.1 CDS Acife_2575 NC_015942.1 2566316 2568352 D PFAM: Integrase, catalytic core; KEGG: mms:mma_0807 hypothetical protein; integrase catalytic subunit 2566316..2568352 Acidithiobacillus ferrivorans SS3 11043331 YP_004784990.1 CDS Acife_2576 NC_015942.1 2568630 2569592 D SMART: ATPase, AAA+ type, core; KEGG: mms:mma_0806 hypothetical protein; AAA ATPase 2568630..2569592 Acidithiobacillus ferrivorans SS3 11044531 YP_004784991.1 CDS Acife_2577 NC_015942.1 2569792 2571753 D KEGG: rpf:Rpic12D_4722 hypothetical protein; hypothetical protein 2569792..2571753 Acidithiobacillus ferrivorans SS3 11043332 YP_004784992.1 CDS Acife_2578 NC_015942.1 2571803 2572078 D hypothetical protein 2571803..2572078 Acidithiobacillus ferrivorans SS3 11043333 YP_004784993.1 CDS Acife_2579 NC_015942.1 2572148 2572438 D PFAM: Nucleotidyltransferase; KEGG: gpb:HDN1F_30740 DNA polymerase, beta-like region; DNA polymerase beta domain-containing protein 2572148..2572438 Acidithiobacillus ferrivorans SS3 11043334 YP_004784994.1 CDS Acife_2580 NC_015942.1 2572435 2572803 D PFAM: Protein of unknown function DUF86; KEGG: avn:Avin_50240 hypothetical protein; hypothetical protein 2572435..2572803 Acidithiobacillus ferrivorans SS3 11043335 YP_004784995.1 CDS Acife_2582 NC_015942.1 2573150 2573338 D KEGG: xop:PXO_04731 transposase TnpA, ISL3 family; transposase TnpA, ISL3 family 2573150..2573338 Acidithiobacillus ferrivorans SS3 11043336 YP_004784996.1 CDS Acife_2583 NC_015942.1 2573628 2573900 R hypothetical protein complement(2573628..2573900) Acidithiobacillus ferrivorans SS3 11043337 YP_004784997.1 CDS Acife_2584 NC_015942.1 2574345 2575256 R PFAM: Protein of unknown function DUF6, transmembrane; KEGG: hna:Hneap_1754 protein of unknown function DUF6 transmembrane; hypothetical protein complement(2574345..2575256) Acidithiobacillus ferrivorans SS3 11043338 YP_004784998.1 CDS Acife_2585 NC_015942.1 2575763 2576416 D PFAM: Class II aldolase/adducin, N-terminal; KEGG: bts:Btus_2794 class II aldolase/adducin family protein; class II aldolase/adducin family protein 2575763..2576416 Acidithiobacillus ferrivorans SS3 11044533 YP_004784999.1 CDS Acife_2586 NC_015942.1 2576413 2576790 D PFAM: Transcriptional regulator PadR N-terminal-like; KEGG: bts:Btus_2793 transcriptional regulator, PadR-like family; PadR-like family transcriptional regulator 2576413..2576790 Acidithiobacillus ferrivorans SS3 11043339 YP_004785000.1 CDS Acife_2587 NC_015942.1 2576783 2577193 D PFAM: Carboxymuconolactone decarboxylase; KEGG: afo:Afer_1875 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 2576783..2577193 Acidithiobacillus ferrivorans SS3 11043340 YP_004785001.1 CDS Acife_2588 NC_015942.1 2577177 2577350 D hypothetical protein 2577177..2577350 Acidithiobacillus ferrivorans SS3 11043341 YP_004785002.1 CDS Acife_2589 NC_015942.1 2577381 2577905 R SMART: Rhodanese-like; KEGG: lch:Lcho_1075 rhodanese domain-containing protein; rhodanese-like protein complement(2577381..2577905) Acidithiobacillus ferrivorans SS3 11043342 YP_004785003.1 CDS Acife_2590 NC_015942.1 2578037 2578189 R hypothetical protein complement(2578037..2578189) Acidithiobacillus ferrivorans SS3 11044534 YP_004785004.1 CDS Acife_2595 NC_015942.1 2580017 2580652 R PFAM: Cytochrome c oxidase, subunit III; KEGG: afr:AFE_0633 cytochrome o ubiquinol oxidase, subunit III; cytochrome c oxidase subunit III complement(2580017..2580652) Acidithiobacillus ferrivorans SS3 11044536 YP_004785005.1 CDS Acife_2596 NC_015942.1 2580725 2582860 R PFAM: Cytochrome c oxidase, subunit I; KEGG: afe:Lferr_0782 cytochrome-c oxidase; cytochrome c oxidase subunit I complement(2580725..2582860) Acidithiobacillus ferrivorans SS3 11043346 YP_004785006.1 CDS Acife_2597 NC_015942.1 2582883 2583854 R PFAM: Cytochrome c oxidase subunit II C-terminal; COX aromatic rich; KEGG: afr:AFE_0631 cytochrome o ubiquinol oxidase, subunit II; cytochrome c oxidase subunit II complement(2582883..2583854) Acidithiobacillus ferrivorans SS3 11043347 YP_004785007.1 CDS Acife_2599 NC_015942.1 2584198 2585058 R PFAM: Protein of unknown function DUF1641; hypothetical protein complement(2584198..2585058) Acidithiobacillus ferrivorans SS3 11043349 YP_004785008.1 CDS Acife_2600 NC_015942.1 2585118 2586425 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tin:Tint_1281 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2585118..2586425) Acidithiobacillus ferrivorans SS3 11044537 YP_004785009.1 CDS Acife_2601 NC_015942.1 2586577 2587512 R PFAM: Sulphur oxygenase reductase; KEGG: hna:Hneap_1222 sulfur oxygenase/reductase; sulfur oxygenase reductase complement(2586577..2587512) Acidithiobacillus ferrivorans SS3 11043350 YP_004785010.1 CDS Acife_2602 NC_015942.1 2587888 2589237 D KEGG: sto:ST2470 hypothetical protein; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; pyrrolo-quinoline quinone repeat-containing protein 2587888..2589237 Acidithiobacillus ferrivorans SS3 11044538 YP_004785011.1 CDS Acife_2603 NC_015942.1 2589431 2590243 D KEGG: afr:AFE_0042 Tat (twin-arginine translocation) pathway signal sequence domain protein; Tat (twin-arginine translocation) pathway signal sequence domain-containing protein 2589431..2590243 Acidithiobacillus ferrivorans SS3 11043351 YP_004785012.1 CDS Acife_2604 NC_015942.1 2590751 2592559 D PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; KEGG: pen:PSEEN4255 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger 2590751..2592559 Acidithiobacillus ferrivorans SS3 11043352 YP_004785013.1 CDS Acife_2607 NC_015942.1 2593783 2594304 R KEGG: alv:Alvin_3239 hypothetical protein; hypothetical protein complement(2593783..2594304) Acidithiobacillus ferrivorans SS3 11043354 YP_004785014.1 CDS Acife_2608 NC_015942.1 2594620 2594904 R KEGG: afr:AFE_1070 DNA-binding protein, HU family; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein complement(2594620..2594904) Acidithiobacillus ferrivorans SS3 11043355 YP_004785015.1 CDS Acife_2609 NC_015942.1 2595023 2595310 D KEGG: afe:Lferr_0253 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF167; hypothetical protein 2595023..2595310 Acidithiobacillus ferrivorans SS3 11043356 YP_004785016.1 CDS Acife_2610 NC_015942.1 2595417 2595680 D KEGG: afr:AFE_1865 hypothetical protein; hypothetical protein 2595417..2595680 Acidithiobacillus ferrivorans SS3 11043357 YP_004785017.1 CDS Acife_2611 NC_015942.1 2595643 2595804 D hypothetical protein 2595643..2595804 Acidithiobacillus ferrivorans SS3 11043358 YP_004785018.1 CDS Acife_2612 NC_015942.1 2595888 2596079 D hypothetical protein 2595888..2596079 Acidithiobacillus ferrivorans SS3 11043359 YP_004785019.1 CDS Acife_2613 NC_015942.1 2596076 2596336 D KEGG: afr:AFE_1198 hypothetical protein; hypothetical protein 2596076..2596336 Acidithiobacillus ferrivorans SS3 11044539 YP_004785020.1 CDS Acife_2614 NC_015942.1 2596330 2597046 D PFAM: YkuD domain; KEGG: afr:AFE_2089 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2596330..2597046 Acidithiobacillus ferrivorans SS3 11044540 YP_004785021.1 CDS Acife_2615 NC_015942.1 2597365 2598738 D KEGG: syn:sll1641 glutamate decarboxylase; TIGRFAM: Glutamate decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase; glutamate decarboxylase 2597365..2598738 Acidithiobacillus ferrivorans SS3 11043360 YP_004785022.1 CDS Acife_2616 NC_015942.1 2599136 2600566 D PFAM: Phospholipase D/Transphosphatidylase; KEGG: mxa:MXAN_0537 putative cardiolipin synthase; phospholipase D/transphosphatidylase 2599136..2600566 Acidithiobacillus ferrivorans SS3 11043361 YP_004785023.1 CDS Acife_2617 NC_015942.1 2600707 2601757 D manually curated; KEGG: eba:ebA3243 IS5 family transposase; hypothetical protein join(2600707..2601219,2601221..2601757) Acidithiobacillus ferrivorans SS3 11043362 YP_004785024.1 CDS Acife_2619 NC_015942.1 2602287 2602685 D PFAM: Transposase (putative), IS66 Orf2 like; KEGG: eba:ebB23 transpoase helper protein; IS66 Orf2 family protein 2602287..2602685 Acidithiobacillus ferrivorans SS3 11043364 YP_004785025.1 CDS Acife_2620 NC_015942.1 2602675 2604267 D PFAM: Transposase, IS66; KEGG: eba:ebA859 transposase; transposase IS66 2602675..2604267 Acidithiobacillus ferrivorans SS3 11043365 YP_004785026.1 CDS Acife_2621 NC_015942.1 2604519 2605559 R PFAM: Transposase, IS116/IS110/IS902; KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein complement(2604519..2605559) Acidithiobacillus ferrivorans SS3 11043366 YP_004785027.1 CDS Acife_2622 NC_015942.1 2606213 2608423 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; DoxX; KEGG: afr:AFE_0098 DoxD family protein/pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2606213..2608423) Acidithiobacillus ferrivorans SS3 11043367 YP_004785028.1 CDS Acife_2624 NC_015942.1 2609532 2609915 D hypothetical protein 2609532..2609915 Acidithiobacillus ferrivorans SS3 11044541 YP_004785029.1 CDS Acife_2625 NC_015942.1 2609985 2611751 D PFAM: Flavodoxin/nitric oxide synthase; FAD-binding, type 1; Oxidoreductase FAD/NAD(P)-binding; KEGG: afr:AFE_3121 sulfite reductase (NADPH) flavoprotein, alpha component; flavodoxin/nitric oxide synthase 2609985..2611751 Acidithiobacillus ferrivorans SS3 11043369 YP_004785030.1 CDS Acife_2626 NC_015942.1 2611741 2613432 D TIGRFAM: Sulphite reductase (NADPH) hemoprotein, beta subunit; HAMAP: Sulfite reductase [NADPH] hemoprotein beta-component; KEGG: afr:AFE_3122 sulfite reductase (NADPH) hemoprotein beta-component; PFAM: Nitrite/sulphite reductase 4Fe-4S region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; sulfite reductase (NADPH) hemoprotein beta-component 2611741..2613432 Acidithiobacillus ferrivorans SS3 11044542 YP_004785031.1 CDS Acife_2627 NC_015942.1 2613429 2614169 D KEGG: afr:AFE_3123 adenylylsulfate reductase, thioredoxin dependent; TIGRFAM: Adenylylsulphate reductase, thioredoxin dependent; Phosphoadenosine phosphosulphate reductase CysH-type; PFAM: Phosphoadenosine phosphosulphate reductase; adenylylsulfate reductase, thioredoxin dependent 2613429..2614169 Acidithiobacillus ferrivorans SS3 11043370 YP_004785032.1 CDS Acife_2628 NC_015942.1 2614166 2615104 D KEGG: afr:AFE_3124 sulfate adenylyltransferase subunit 2; TIGRFAM: Sulphate adenylyltransferase, small subunit; PFAM: Phosphoadenosine phosphosulphate reductase; sulfate adenylyltransferase small subunit 2614166..2615104 Acidithiobacillus ferrivorans SS3 11043371 YP_004785033.1 CDS Acife_2629 NC_015942.1 2615104 2616456 D KEGG: afr:AFE_3125 sulfate adenylyltransferase, large subunit; TIGRFAM: Sulphate adenylyltransferase, large subunit; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; sulfate adenylyltransferase large subunit 2615104..2616456 Acidithiobacillus ferrivorans SS3 11043372 YP_004785034.1 CDS Acife_2630 NC_015942.1 2616547 2617368 D KEGG: afr:AFE_3126 uroporphyrin-III C-methyltransferase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; PFAM: Tetrapyrrole methylase; uroporphyrin-III C-methyltransferase 2616547..2617368 Acidithiobacillus ferrivorans SS3 11043373 YP_004785035.1 CDS Acife_2631 NC_015942.1 2617621 2618064 D KEGG: afr:AFE_3128 hypothetical protein; hypothetical protein 2617621..2618064 Acidithiobacillus ferrivorans SS3 11044543 YP_004785036.1 CDS Acife_2632 NC_015942.1 2618233 2618466 D PFAM: SirA-like; KEGG: afr:AFE_3117 hypothetical protein; SirA-like domain-containing protein 2618233..2618466 Acidithiobacillus ferrivorans SS3 11044544 YP_004785037.1 CDS Acife_2633 NC_015942.1 2618491 2619630 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afr:AFE_3118 pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2618491..2619630 Acidithiobacillus ferrivorans SS3 11043374 YP_004785038.1 CDS Acife_2634 NC_015942.1 2619645 2620106 D KEGG: afe:Lferr_2717 hypothetical protein; hypothetical protein 2619645..2620106 Acidithiobacillus ferrivorans SS3 11043375 YP_004785039.1 CDS Acife_2635 NC_015942.1 2620257 2621498 D KEGG: afr:AFE_0407 aspartate kinase, monofunctional class; TIGRFAM: Aspartate kinase region; Aspartate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; aspartate kinase 2620257..2621498 Acidithiobacillus ferrivorans SS3 11043376 YP_004785040.1 CDS Acife_2636 NC_015942.1 2621498 2622664 D TIGRFAM: Acetylornithine/succinylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; KEGG: afr:AFE_0406 acetylornithine aminotransferase; PFAM: Aminotransferase class-III; acetylornithine/succinyldiaminopimelate aminotransferase 2621498..2622664 Acidithiobacillus ferrivorans SS3 11044545 YP_004785041.1 CDS Acife_2637 NC_015942.1 2622661 2623596 D TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; KEGG: afr:AFE_0405 ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; ornithine carbamoyltransferase 2622661..2623596 Acidithiobacillus ferrivorans SS3 11043377 YP_004785042.1 CDS Acife_2638 NC_015942.1 2623600 2624799 D TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: afr:AFE_0404 argininosuccinate synthase; PFAM: Argininosuccinate synthase; argininosuccinate synthase 2623600..2624799 Acidithiobacillus ferrivorans SS3 11043378 YP_004785043.1 CDS Acife_2639 NC_015942.1 2624805 2625122 D PFAM: Protein of unknown function DUF1255; KEGG: afr:AFE_0403 hypothetical protein; hypothetical protein 2624805..2625122 Acidithiobacillus ferrivorans SS3 11043379 YP_004785044.1 CDS Acife_2640 NC_015942.1 2625133 2625540 D KEGG: afr:AFE_0402 lactoylglutathione lyase; TIGRFAM: Glyoxalase I; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2625133..2625540 Acidithiobacillus ferrivorans SS3 11043380 YP_004785045.1 CDS Acife_2641 NC_015942.1 2625573 2626298 R TIGRFAM: DNA polymerase 3, epsilon subunit; DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: afr:AFE_0400 DNA polymerase III, epsilon subunit; SMART: Exonuclease; DNA polymerase III subunit epsilon complement(2625573..2626298) Acidithiobacillus ferrivorans SS3 11043381 YP_004785046.1 CDS Acife_2642 NC_015942.1 2626289 2626765 R KEGG: afr:AFE_0399 ribonuclease HI; HAMAP: Ribonuclease H; PFAM: Ribonuclease H; ribonuclease H complement(2626289..2626765) Acidithiobacillus ferrivorans SS3 11043382 YP_004785047.1 CDS Acife_2643 NC_015942.1 2626747 2627547 R PFAM: Methyltransferase type 11; KEGG: afr:AFE_0398 hypothetical protein; type 11 methyltransferase complement(2626747..2627547) Acidithiobacillus ferrivorans SS3 11043383 YP_004785048.1 CDS Acife_2644 NC_015942.1 2627656 2628408 D KEGG: afr:AFE_0397 hydroxyacylglutathione hydrolase, putative; TIGRFAM: Hydroxyacylglutathione hydrolase; HAMAP: Hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 2627656..2628408 Acidithiobacillus ferrivorans SS3 11043384 YP_004785049.1 CDS Acife_2645 NC_015942.1 2628411 2629646 R PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: afr:AFE_0396 peptidase, M16 family; peptidase M16 domain-containing protein complement(2628411..2629646) Acidithiobacillus ferrivorans SS3 11043385 YP_004785050.1 CDS Acife_2646 NC_015942.1 2629815 2631893 R TIGRFAM: Polyribonucleotide nucleotidyltransferase; HAMAP: Polyribonucleotide nucleotidyltransferase; KEGG: afe:Lferr_0559 polyribonucleotide nucleotidyltransferase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA binding domain; polyribonucleotide nucleotidyltransferase complement(2629815..2631893) Acidithiobacillus ferrivorans SS3 11043386 YP_004785051.1 CDS Acife_2647 NC_015942.1 2631904 2632173 R KEGG: afr:AFE_0394 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15; 30S ribosomal protein S15 complement(2631904..2632173) Acidithiobacillus ferrivorans SS3 11043387 YP_004785052.1 CDS Acife_2648 NC_015942.1 2632212 2633096 R TIGRFAM: Pseudouridine synthase II, TruB, N-terminal, bacterial-type; HAMAP: tRNA pseudouridine synthase B; KEGG: afr:AFE_0393 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II, TruB, N-terminal; Pseudouridine synthase II, TruB, subfamily 1, C-terminal, bacterial-type; tRNA pseudouridine synthase B complement(2632212..2633096) Acidithiobacillus ferrivorans SS3 11043388 YP_004785053.1 CDS Acife_2649 NC_015942.1 2633093 2633488 R TIGRFAM: Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; KEGG: afr:AFE_0392 ribosome-binding factor A; PFAM: Ribosome-binding factor A; ribosome-binding factor A complement(2633093..2633488) Acidithiobacillus ferrivorans SS3 11043389 YP_004785054.1 CDS Acife_2650 NC_015942.1 2633498 2636128 R KEGG: afr:AFE_0391 translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Initiation factor 2 associated region, bacterial; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; translation initiation factor IF-2 complement(2633498..2636128) Acidithiobacillus ferrivorans SS3 11044546 YP_004785055.1 CDS Acife_2651 NC_015942.1 2636188 2637669 R KEGG: afr:AFE_0390 transcription termination factor NusA; TIGRFAM: Transcription termination factor NusA; Transcription termination factor NusA, C-terminal duplication; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA binding domain; NusA antitermination factor complement(2636188..2637669) Acidithiobacillus ferrivorans SS3 11043390 YP_004785056.1 CDS Acife_2652 NC_015942.1 2637701 2638162 R KEGG: afe:Lferr_0553 hypothetical protein; HAMAP: Uncharacterised protein family UPF0090, bacteria; PFAM: Uncharacterised protein family UPF0090; ribosome maturation factor rimP complement(2637701..2638162) Acidithiobacillus ferrivorans SS3 11043391 YP_004785057.1 CDS Acife_2653 NC_015942.1 2643725 2644768 R PFAM: YkuD domain; KEGG: afr:AFE_0382 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein complement(2643725..2644768) Acidithiobacillus ferrivorans SS3 11043397 YP_004785058.1 CDS Acife_2654 NC_015942.1 2644765 2644998 R KEGG: afr:AFE_0381 hypothetical protein; hypothetical protein complement(2644765..2644998) Acidithiobacillus ferrivorans SS3 11044548 YP_004785059.1 CDS Acife_2655 NC_015942.1 2645003 2646268 R PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Seryl-tRNA synthetase, class IIa, N-terminal; manually curated; TIGRFAM: Seryl-tRNA synthetase, class IIa; KEGG: afr:AFE_0380 seryl-tRNA synthetase; HAMAP: Seryl-tRNA synthetase; Seryl-tRNA synthetase complement(2645003..2646268) Acidithiobacillus ferrivorans SS3 11043398 YP_004785060.1 CDS Acife_2656 NC_015942.1 2646261 2647592 R KEGG: afr:AFE_0379 ATPase, AAA family; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; AAA ATPase central domain-containing protein complement(2646261..2647592) Acidithiobacillus ferrivorans SS3 11043399 YP_004785061.1 CDS Acife_2657 NC_015942.1 2647620 2648696 R PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: afr:AFE_0378 outer membrane protein transport protein, OMPP1/FadL/TodX family; aromatic hydrocarbon degradation membrane protein complement(2647620..2648696) Acidithiobacillus ferrivorans SS3 11044549 YP_004785062.1 CDS Acife_2658 NC_015942.1 2648714 2649406 R TIGRFAM: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; HAMAP: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; KEGG: afr:AFE_0377 outer membrane lipoprotein carrier protein LolA, putative; PFAM: Outer membrane lipoprotein carrier protein LolA; outer-membrane lipoprotein carrier protein complement(2648714..2649406) Acidithiobacillus ferrivorans SS3 11043400 YP_004785063.1 CDS Acife_2659 NC_015942.1 2649378 2651693 R PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: afe:Lferr_0546 cell divisionFtsK/SpoIIIE; cell division FtsK/SpoIIIE complement(2649378..2651693) Acidithiobacillus ferrivorans SS3 11044550 YP_004785064.1 CDS Acife_2660 NC_015942.1 2651955 2652923 D KEGG: afr:AFE_0375 thioredoxin-disulfide reductase; TIGRFAM: Thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 2651955..2652923 Acidithiobacillus ferrivorans SS3 11043401 YP_004785065.1 CDS Acife_2661 NC_015942.1 2652929 2653504 D KEGG: afr:AFE_0374 Smr domain protein; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal; Smr protein/MutS2 2652929..2653504 Acidithiobacillus ferrivorans SS3 11043402 YP_004785066.1 CDS Acife_2662 NC_015942.1 2653525 2654001 R KEGG: afr:AFE_0373 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator complement(2653525..2654001) Acidithiobacillus ferrivorans SS3 11044551 YP_004785067.1 CDS Acife_2663 NC_015942.1 2654078 2655166 R TIGRFAM: Pseudouridine synthase, TruD; HAMAP: tRNA pseudouridine synthase D; KEGG: afr:AFE_0372 tRNA pseudouridine synthase D; PFAM: Pseudouridine synthase, TruD; tRNA pseudouridine synthase D complement(2654078..2655166) Acidithiobacillus ferrivorans SS3 11043403 YP_004785068.1 CDS Acife_2664 NC_015942.1 2655159 2655638 R TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; KEGG: afe:Lferr_0541 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(2655159..2655638) Acidithiobacillus ferrivorans SS3 11043404 YP_004785069.1 CDS Acife_2665 NC_015942.1 2655643 2656356 R TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; HAMAP: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; KEGG: afr:AFE_0370 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(2655643..2656356) Acidithiobacillus ferrivorans SS3 11043405 YP_004785070.1 CDS Acife_2666 NC_015942.1 2656510 2659875 D TIGRFAM: Transcription-repair coupling factor; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Transcription factor CarD; DNA/RNA helicase, C-terminal; Transcription-repair-coupling factor; KEGG: afr:AFE_0369 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; transcription-repair coupling factor 2656510..2659875 Acidithiobacillus ferrivorans SS3 11044552 YP_004785071.1 CDS Acife_2667 NC_015942.1 2659890 2661104 D PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: cph:Cpha266_2270 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 2659890..2661104 Acidithiobacillus ferrivorans SS3 11043406 YP_004785072.1 CDS Acife_2669 NC_015942.1 2661263 2662381 D KEGG: afe:Lferr_0538 phosphoserine phosphatase SerB; TIGRFAM: Phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like; PFAM: Haloacid dehalogenase-like hydrolase; phosphoserine phosphatase SerB 2661263..2662381 Acidithiobacillus ferrivorans SS3 11044553 YP_004785073.1 CDS Acife_2670 NC_015942.1 2662521 2663264 D KEGG: afr:AFE_0367 AhpC/TSA family/glutaredoxin domain protein; TIGRFAM: Glutaredoxin-like region; PFAM: Redoxin; Glutaredoxin; glutaredoxin domain-containing protein region 2662521..2663264 Acidithiobacillus ferrivorans SS3 11043408 YP_004785074.1 CDS Acife_2671 NC_015942.1 2663345 2664694 D KEGG: afr:AFE_0366 glutathione reductase; TIGRFAM: Glutathione reductase, animal/bacterial; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; glutathione-disulfide reductase 2663345..2664694 Acidithiobacillus ferrivorans SS3 11043409 YP_004785075.1 CDS Acife_2672 NC_015942.1 2664719 2665531 R KEGG: afr:AFE_0365 methylthioadenosine phosphorylase; TIGRFAM: Methylthioadenosine phosphorylase; PFAM: Nucleoside phosphorylase; methylthioadenosine phosphorylase complement(2664719..2665531) Acidithiobacillus ferrivorans SS3 11044554 YP_004785076.1 CDS Acife_2673 NC_015942.1 2665531 2666079 R PFAM: Phosphoribosyltransferase; KEGG: afr:AFE_0364 hypoxanthine-guanine phosphoribosyltransferase, putative; phosphoribosyltransferase complement(2665531..2666079) Acidithiobacillus ferrivorans SS3 11043410 YP_004785077.1 CDS Acife_2674 NC_015942.1 2666084 2666461 R KEGG: afr:AFE_0363 hypothetical protein; hypothetical protein complement(2666084..2666461) Acidithiobacillus ferrivorans SS3 11044555 YP_004785078.1 CDS Acife_2675 NC_015942.1 2666572 2666928 R KEGG: afr:AFE_0362 hypothetical protein; hypothetical protein complement(2666572..2666928) Acidithiobacillus ferrivorans SS3 11043411 YP_004785079.1 CDS Acife_2676 NC_015942.1 2666952 2667305 R KEGG: afr:AFE_0361 hypothetical protein; hypothetical protein complement(2666952..2667305) Acidithiobacillus ferrivorans SS3 11043412 YP_004785080.1 CDS Acife_2677 NC_015942.1 2667470 2668180 R KEGG: afr:AFE_0360 PAP2 family protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; phosphoesterase PA-phosphatase-like protein complement(2667470..2668180) Acidithiobacillus ferrivorans SS3 11043413 YP_004785081.1 CDS Acife_2678 NC_015942.1 2668220 2668585 R PFAM: Diacylglycerol kinase, prokaryotic; KEGG: afr:AFE_0359 diacylglycerol kinase; diacylglycerol kinase complement(2668220..2668585) Acidithiobacillus ferrivorans SS3 11043414 YP_004785082.1 CDS Acife_2679 NC_015942.1 2668582 2669256 R KEGG: afr:AFE_0358 DNA repair protein RadC; TIGRFAM: DNA repair, RadC-like; PFAM: DNA repair, RadC-like; DNA repair protein RadC complement(2668582..2669256) Acidithiobacillus ferrivorans SS3 11043415 YP_004785083.1 CDS Acife_2680 NC_015942.1 2669292 2670545 D KEGG: afr:AFE_0357 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: Flavoprotein; DNA/pantothenate metabolism flavoprotein, C-terminal; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase 2669292..2670545 Acidithiobacillus ferrivorans SS3 11043416 YP_004785084.1 CDS Acife_2681 NC_015942.1 2670538 2670990 D KEGG: afr:AFE_0356 deoxyuridine 5`-triphosphate nucleotidohydrolase; TIGRFAM: DeoxyUTP pyrophosphatase domain, subfamily 1,; PFAM: DeoxyUTP pyrophosphatase domain; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 2670538..2670990 Acidithiobacillus ferrivorans SS3 11043417 YP_004785085.1 CDS Acife_2682 NC_015942.1 2671149 2671523 R TIGRFAM: Ribosomal protein L17; HAMAP: 50S ribosomal protein L17; KEGG: afr:AFE_0355 50S ribosomal protein L17; PFAM: Ribosomal protein L17; 50S ribosomal protein L17 complement(2671149..2671523) Acidithiobacillus ferrivorans SS3 11043418 YP_004785086.1 CDS Acife_2683 NC_015942.1 2671554 2672573 R SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; KEGG: afr:AFE_0354 DNA-directed RNA polymerase subunit alpha; HAMAP: DNA-directed RNA polymerase, alpha subunit; PFAM: DNA-directed RNA polymerase, insert; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal; DNA-directed RNA polymerase subunit alpha complement(2671554..2672573) Acidithiobacillus ferrivorans SS3 11043419 YP_004785087.1 CDS Acife_2684 NC_015942.1 2672596 2673222 R TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4; RNA-binding S4; KEGG: afr:AFE_0353 ribosomal protein S4; SMART: RNA-binding S4; 30S ribosomal protein S4 complement(2672596..2673222) Acidithiobacillus ferrivorans SS3 11044556 YP_004785088.1 CDS Acife_2685 NC_015942.1 2673243 2673638 R KEGG: afr:AFE_0352 ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11; 30S ribosomal protein S11 complement(2673243..2673638) Acidithiobacillus ferrivorans SS3 11043420 YP_004785089.1 CDS Acife_2686 NC_015942.1 2673656 2674012 R KEGG: afr:AFE_0351 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13; 30S ribosomal protein S13 complement(2673656..2674012) Acidithiobacillus ferrivorans SS3 11043421 YP_004785090.1 CDS Acife_2687 NC_015942.1 2674076 2674189 R PFAM: Ribosomal protein L36; manually curated; TIGRFAM: Ribosomal protein L36; KEGG: afr:AFE_0350 50S ribosomal protein L36; HAMAP: Ribosomal protein L36; 50S ribosomal protein L36 complement(2674076..2674189) Acidithiobacillus ferrivorans SS3 11044557 YP_004785091.1 CDS Acife_2688 NC_015942.1 2674199 2674417 R TIGRFAM: Translation initiation factor IF-1; HAMAP: Translation initiation factor IF-1; KEGG: afr:AFE_0349 translation initiation factor IF-1; PFAM: S1, IF1 type; translation initiation factor IF-1 complement(2674199..2674417) Acidithiobacillus ferrivorans SS3 11043422 YP_004785092.1 CDS Acife_2689 NC_015942.1 2674418 2675080 R TIGRFAM: Adenylate kinase, subfamily; HAMAP: Adenylate kinase; KEGG: afe:Lferr_0518 nucleoside-triphosphate--adenylate kinase; PFAM: Adenylate kinase; Adenylate kinase, zinc-finger lid region; adenylate kinase complement(2674418..2675080) Acidithiobacillus ferrivorans SS3 11043423 YP_004785093.1 CDS Acife_2690 NC_015942.1 2675077 2676408 R KEGG: afr:AFE_0347 preprotein translocase, SecY subunit; TIGRFAM: SecY protein; PFAM: SecY protein; preprotein translocase subunit SecY complement(2675077..2676408) Acidithiobacillus ferrivorans SS3 11043424 YP_004785094.1 CDS Acife_2691 NC_015942.1 2676408 2676845 R KEGG: afr:AFE_0346 50S ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; PFAM: Ribosomal protein L15; 50S ribosomal protein L15 complement(2676408..2676845) Acidithiobacillus ferrivorans SS3 11043425 YP_004785095.1 CDS Acife_2692 NC_015942.1 2676842 2677027 R KEGG: afr:AFE_0345 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30p/L7e, conserved region; 50S ribosomal protein L30 complement(2676842..2677027) Acidithiobacillus ferrivorans SS3 11043426 YP_004785096.1 CDS Acife_2693 NC_015942.1 2677020 2677550 R KEGG: afr:AFE_0344 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal; 30S ribosomal protein S5 complement(2677020..2677550) Acidithiobacillus ferrivorans SS3 11043427 YP_004785097.1 CDS Acife_2694 NC_015942.1 2677563 2677916 R KEGG: afr:AFE_0343 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5; 50S ribosomal protein L18 complement(2677563..2677916) Acidithiobacillus ferrivorans SS3 11044558 YP_004785098.1 CDS Acife_2695 NC_015942.1 2677935 2678459 R KEGG: afr:AFE_0342 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain; 50S ribosomal protein L6 complement(2677935..2678459) Acidithiobacillus ferrivorans SS3 11043428 YP_004785099.1 CDS Acife_2696 NC_015942.1 2678473 2678868 R PFAM: Ribosomal protein S8; KEGG: afr:AFE_0341 30S ribosomal protein S8; 30S ribosomal protein S8 complement(2678473..2678868) Acidithiobacillus ferrivorans SS3 11043429 YP_004785100.1 CDS Acife_2697 NC_015942.1 2678878 2679063 R KEGG: afr:AFE_0340 30S ribosomal protein S14; manually curated; PFAM: Ribosomal protein S14; 30S ribosomal protein S14 complement(2678878..2679063) Acidithiobacillus ferrivorans SS3 11044559 YP_004785101.1 CDS Acife_2698 NC_015942.1 2679077 2679619 R PFAM: Ribosomal protein L5; KEGG: afr:AFE_0339 50S ribosomal protein L5; 50S ribosomal protein L5 complement(2679077..2679619) Acidithiobacillus ferrivorans SS3 11043430 YP_004785102.1 CDS Acife_2699 NC_015942.1 2679634 2679954 R TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: afr:AFE_0338 50S ribosomal protein L24; SMART: KOW; 50S ribosomal protein L24 complement(2679634..2679954) Acidithiobacillus ferrivorans SS3 11044560 YP_004785103.1 CDS Acife_2700 NC_015942.1 2679964 2680332 R KEGG: afr:AFE_0337 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14b/L23e; 50S ribosomal protein L14 complement(2679964..2680332) Acidithiobacillus ferrivorans SS3 11043431 YP_004785104.1 CDS Acife_2701 NC_015942.1 2680329 2680604 R KEGG: afr:AFE_0336 ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17; 30S ribosomal protein S17 complement(2680329..2680604) Acidithiobacillus ferrivorans SS3 11043432 YP_004785105.1 CDS Acife_2702 NC_015942.1 2680601 2680798 R KEGG: afr:AFE_0335 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29; 50S ribosomal protein L29 complement(2680601..2680798) Acidithiobacillus ferrivorans SS3 11044561 YP_004785106.1 CDS Acife_2703 NC_015942.1 2680795 2681211 R TIGRFAM: Ribosomal protein L16; HAMAP: Ribosomal protein L16; KEGG: afr:AFE_0334 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; 50S ribosomal protein L16 complement(2680795..2681211) Acidithiobacillus ferrivorans SS3 11043433 YP_004785107.1 CDS Acife_2704 NC_015942.1 2681224 2681886 R TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; K Homology, type 2; Ribosomal protein S3, N-terminal; KEGG: afr:AFE_0333 ribosomal protein S3; SMART: K Homology; 30S ribosomal protein S3 complement(2681224..2681886) Acidithiobacillus ferrivorans SS3 11043434 YP_004785108.1 CDS Acife_2705 NC_015942.1 2681898 2682230 R manually curated; TIGRFAM: Ribosomal protein L22, bacterial-type; KEGG: afr:AFE_0332 50S ribosomal protein L22; PFAM: Ribosomal protein L22/L17; 50S ribosomal protein L22 complement(2681898..2682230) Acidithiobacillus ferrivorans SS3 11043435 YP_004785109.1 CDS Acife_2706 NC_015942.1 2682242 2682517 R KEGG: afr:AFE_0331 30S ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15; 30S ribosomal protein S19 complement(2682242..2682517) Acidithiobacillus ferrivorans SS3 11044562 YP_004785110.1 CDS Acife_2707 NC_015942.1 2682536 2683360 R KEGG: afr:AFE_0330 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2; 50S ribosomal protein L2 complement(2682536..2683360) Acidithiobacillus ferrivorans SS3 11043436 YP_004785111.1 CDS Acife_2708 NC_015942.1 2683377 2683670 R PFAM: Ribosomal protein L25/L23; KEGG: afr:AFE_0329 50S ribosomal protein L23; 50S ribosomal protein L25/L23 complement(2683377..2683670) Acidithiobacillus ferrivorans SS3 11043437 YP_004785112.1 CDS Acife_2709 NC_015942.1 2683667 2684284 R PFAM: Ribosomal protein L4/L1e; KEGG: afr:AFE_0328 50S ribosomal protein L4; 50S ribosomal protein L4/L1e complement(2683667..2684284) Acidithiobacillus ferrivorans SS3 11044563 YP_004785113.1 CDS Acife_2710 NC_015942.1 2684295 2684927 R KEGG: afr:AFE_0327 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3; 50S ribosomal protein L3 complement(2684295..2684927) Acidithiobacillus ferrivorans SS3 11043438 YP_004785114.1 CDS Acife_2711 NC_015942.1 2684945 2685253 R TIGRFAM: Ribosomal protein S10, bacterial; HAMAP: 30S ribosomal protein S10; KEGG: afr:AFE_0326 30S ribosomal protein S10; PFAM: Ribosomal protein S10; 30S ribosomal protein S10 complement(2684945..2685253) Acidithiobacillus ferrivorans SS3 11043439 YP_004785115.1 CDS Acife_2712 NC_015942.1 2685253 2686443 R KEGG: afr:AFE_0325 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal; translation elongation factor Tu complement(2685253..2686443) Acidithiobacillus ferrivorans SS3 11044564 YP_004785116.1 CDS Acife_2713 NC_015942.1 2686464 2688563 R KEGG: afr:AFE_0324 elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; translation elongation factor G complement(2686464..2688563) Acidithiobacillus ferrivorans SS3 11043440 YP_004785117.1 CDS Acife_2714 NC_015942.1 2688595 2689065 R KEGG: afr:AFE_0323 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7; 30S ribosomal protein S7 complement(2688595..2689065) Acidithiobacillus ferrivorans SS3 11043441 YP_004785118.1 CDS Acife_2715 NC_015942.1 2689092 2689463 R KEGG: afr:AFE_0322 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacterial-type; PFAM: Ribosomal protein S12/S23; 30S ribosomal protein S12 complement(2689092..2689463) Acidithiobacillus ferrivorans SS3 11043442 YP_004785119.1 CDS Acife_2716 NC_015942.1 2689571 2693734 R SMART: RNA polymerase, N-terminal; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; KEGG: afe:Lferr_0491 DNA-directed RNA polymerase subunit beta'; HAMAP: DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5; DNA-directed RNA polymerase subunit beta' complement(2689571..2693734) Acidithiobacillus ferrivorans SS3 11043443 YP_004785120.1 CDS Acife_2717 NC_015942.1 2693758 2697846 R TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase subunit beta; KEGG: afr:AFE_0320 DNA-directed RNA polymerase, beta subunit; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7; DNA-directed RNA polymerase subunit beta complement(2693758..2697846) Acidithiobacillus ferrivorans SS3 11044565 YP_004785121.1 CDS Acife_2718 NC_015942.1 2697969 2698355 R TIGRFAM: Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; KEGG: afr:AFE_0318 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal; 50S ribosomal protein L7/L12 complement(2697969..2698355) Acidithiobacillus ferrivorans SS3 11043444 YP_004785122.1 CDS Acife_2719 NC_015942.1 2698385 2698906 R KEGG: afr:AFE_0317 50S ribosomal protein L10; HAMAP: 50S ribosomal protein L10; PFAM: Ribosomal protein L10; 50S ribosomal protein L10 complement(2698385..2698906) Acidithiobacillus ferrivorans SS3 11044566 YP_004785123.1 CDS Acife_2720 NC_015942.1 2699051 2699743 R KEGG: afr:AFE_0316 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1; 50S ribosomal protein L1 complement(2699051..2699743) Acidithiobacillus ferrivorans SS3 11043445 YP_004785124.1 CDS Acife_2721 NC_015942.1 2699747 2700175 R TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, C-terminal; Ribosomal protein L11, N-terminal; KEGG: afr:AFE_0315 50S ribosomal protein L11; SMART: Ribosomal protein L11; 50S ribosomal protein L11 complement(2699747..2700175) Acidithiobacillus ferrivorans SS3 11043446 YP_004785125.1 CDS Acife_2722 NC_015942.1 2700230 2700763 R TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; KEGG: afr:AFE_0314 transcription termination/antitermination factor NusG; SMART: Transcription antitermination protein, NusG, N-terminal; KOW; NusG antitermination factor complement(2700230..2700763) Acidithiobacillus ferrivorans SS3 11043447 YP_004785126.1 CDS Acife_2723 NC_015942.1 2700764 2701114 R KEGG: afr:AFE_0313 preprotein translocase, SecE subunit; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein secE/sec61-gamma protein; preprotein translocase subunit SecE complement(2700764..2701114) Acidithiobacillus ferrivorans SS3 11043448 YP_004785127.1 CDS Acife_2724 NC_015942.1 2701265 2702455 R KEGG: afr:AFE_0325 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal; translation elongation factor Tu complement(2701265..2702455) Acidithiobacillus ferrivorans SS3 11043450 YP_004785128.1 CDS Acife_2725 NC_015942.1 2703033 2703674 D PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: afr:AFE_0306 OmpA family protein; OmpA/MotB domain-containing protein 2703033..2703674 Acidithiobacillus ferrivorans SS3 11043454 YP_004785129.1 CDS Acife_2726 NC_015942.1 2703774 2705456 D KEGG: afr:AFE_0305 2-polyprenylphenol 6-hydroxylase; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1; 2-polyprenylphenol 6-hydroxylase 2703774..2705456 Acidithiobacillus ferrivorans SS3 11044567 YP_004785130.1 CDS Acife_2727 NC_015942.1 2705514 2705867 D KEGG: afr:AFE_0304 hypothetical protein; hypothetical protein 2705514..2705867 Acidithiobacillus ferrivorans SS3 11044568 YP_004785131.1 CDS Acife_2728 NC_015942.1 2705883 2706455 R KEGG: afr:AFE_0303 hypothetical protein; PFAM: Sel1-like; SMART: Sel1-like; Sel1 domain-containing protein repeat-containing protein complement(2705883..2706455) Acidithiobacillus ferrivorans SS3 11043455 YP_004785132.1 CDS Acife_2729 NC_015942.1 2706619 2706939 R KEGG: afr:AFE_0302 hypothetical protein; hypothetical protein complement(2706619..2706939) Acidithiobacillus ferrivorans SS3 11043456 YP_004785133.1 CDS Acife_2730 NC_015942.1 2707057 2707500 R TIGRFAM: NusB antitermination factor; HAMAP: N utilization substance protein B-like protein; KEGG: afr:AFE_0301 transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; NusB antitermination factor complement(2707057..2707500) Acidithiobacillus ferrivorans SS3 11043457 YP_004785134.1 CDS Acife_2731 NC_015942.1 2707510 2707974 R TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: afr:AFE_0300 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase complement(2707510..2707974) Acidithiobacillus ferrivorans SS3 11043458 YP_004785135.1 CDS Acife_2732 NC_015942.1 2707971 2709104 R TIGRFAM: DHBP synthase RibB; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: afr:AFE_0299 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; PFAM: DHBP synthase RibB; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(2707971..2709104) Acidithiobacillus ferrivorans SS3 11043459 YP_004785136.1 CDS Acife_2733 NC_015942.1 2709101 2709757 R KEGG: afr:AFE_0298 riboflavin synthase, alpha subunit; TIGRFAM: Lumazine-binding protein; PFAM: Lumazine-binding protein; riboflavin synthase subunit alpha complement(2709101..2709757) Acidithiobacillus ferrivorans SS3 11043460 YP_004785137.1 CDS Acife_2734 NC_015942.1 2709761 2710864 R TIGRFAM: Riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase, C-terminal; KEGG: afr:AFE_0297 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding; riboflavin biosynthesis protein RibD complement(2709761..2710864) Acidithiobacillus ferrivorans SS3 11044569 YP_004785138.1 CDS Acife_2735 NC_015942.1 2710854 2711345 R TIGRFAM: Ribonucleotide reductase regulator NrdR-like; HAMAP: Transcriptional repressor nrdR; KEGG: afr:AFE_0296 transcriptional regulator NrdR; PFAM: ATP-cone; transcriptional repressor nrdR complement(2710854..2711345) Acidithiobacillus ferrivorans SS3 11044570 YP_004785139.1 CDS Acife_2736 NC_015942.1 2711352 2712596 R PFAM: Serine hydroxymethyltransferase; KEGG: afr:AFE_0295 serine hydroxymethyltransferase; glycine hydroxymethyltransferase complement(2711352..2712596) Acidithiobacillus ferrivorans SS3 11043461 YP_004785140.1 CDS Acife_2737 NC_015942.1 2712730 2713509 R KEGG: afe:Lferr_0470 hypothetical protein; hypothetical protein complement(2712730..2713509) Acidithiobacillus ferrivorans SS3 11043462 YP_004785141.1 CDS Acife_2738 NC_015942.1 2713705 2714856 D TIGRFAM: Homoserine O-acetyltransferase; HAMAP: Homoserine O-acetyltransferase; KEGG: afr:AFE_0293 homoserine O-acetyltransferase; PFAM: Alpha/beta hydrolase fold-1; homoserine O-acetyltransferase 2713705..2714856 Acidithiobacillus ferrivorans SS3 11043463 YP_004785142.1 CDS Acife_2739 NC_015942.1 2714853 2715458 D KEGG: afr:AFE_0292 methionine biosynthesis protein MetW; TIGRFAM: Methionine biosynthesis MetW; PFAM: Methionine biosynthesis MetW; methionine biosynthesis protein MetW 2714853..2715458 Acidithiobacillus ferrivorans SS3 11043464 YP_004785143.1 CDS Acife_2740 NC_015942.1 2715478 2716134 D PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: afr:AFE_0291 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 2715478..2716134 Acidithiobacillus ferrivorans SS3 11043465 YP_004785144.1 CDS Acife_2741 NC_015942.1 2716182 2716967 D TIGRFAM: UbiE/COQ5 methyltransferase; HAMAP: UbiE/COQ5 methyltransferase; KEGG: afr:AFE_0289 ubiquinone/menaquinone biosynthesis methlytransferase UbiE; PFAM: UbiE/COQ5 methyltransferase; Ubiquinone/menaquinone biosynthesis methyltransferase ubiE 2716182..2716967 Acidithiobacillus ferrivorans SS3 11043466 YP_004785145.1 CDS Acife_2742 NC_015942.1 2717063 2719417 D TIGRFAM: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; HAMAP: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; KEGG: afr:AFE_0288 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: Methionine synthase, vitamin-B12 independent; Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 2717063..2719417 Acidithiobacillus ferrivorans SS3 11044571 YP_004785146.1 CDS Acife_2743 NC_015942.1 2719582 2720211 D PFAM: Carbonic anhydrase; KEGG: afr:AFE_0287 carbonic anhydrase; carbonic anhydrase 2719582..2720211 Acidithiobacillus ferrivorans SS3 11044572 YP_004785147.1 CDS Acife_2744 NC_015942.1 2720221 2721771 D PFAM: Sulphate transporter; KEGG: afr:AFE_0286 sulfate transporter family protein; sulfate transporter 2720221..2721771 Acidithiobacillus ferrivorans SS3 11043467 YP_004785148.1 CDS Acife_2745 NC_015942.1 2721879 2722190 D TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: afr:AFE_0285 50S ribosomal protein L21; PFAM: Ribosomal protein L21; 50S ribosomal protein L21 2721879..2722190 Acidithiobacillus ferrivorans SS3 11043468 YP_004785149.1 CDS Acife_2746 NC_015942.1 2722202 2722462 D TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: afr:AFE_0284 50S ribosomal protein L27; PFAM: Ribosomal protein L27; 50S ribosomal protein L27 2722202..2722462 Acidithiobacillus ferrivorans SS3 11043469 YP_004785150.1 CDS Acife_2747 NC_015942.1 2722517 2723641 D TIGRFAM: GTP-binding protein Obg/CgtA; HAMAP: GTPase obg; KEGG: afr:AFE_0283 GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; GTPase obg 2722517..2723641 Acidithiobacillus ferrivorans SS3 11043470 YP_004785151.1 CDS Acife_2748 NC_015942.1 2723638 2724768 D SMART: Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: Glutamate 5-kinase, ProB-related; KEGG: afr:AFE_0281 glutamate 5-kinase; HAMAP: Glutamate 5-kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; glutamate 5-kinase 2723638..2724768 Acidithiobacillus ferrivorans SS3 11043471 YP_004785152.1 CDS Acife_2749 NC_015942.1 2724765 2725238 R PFAM: Ferric-uptake regulator; KEGG: afr:AFE_0282 ferric uptake regulation protein; Fur family ferric uptake regulator complement(2724765..2725238) Acidithiobacillus ferrivorans SS3 11043472 YP_004785153.1 CDS Acife_2750 NC_015942.1 2725305 2725652 D PFAM: SmpA/OmlA; KEGG: afr:AFE_0279 lipoprotein, SmpA/OmlA family; SmpA/OmlA domain-containing protein 2725305..2725652 Acidithiobacillus ferrivorans SS3 11043473 YP_004785154.1 CDS Acife_2751 NC_015942.1 2725642 2726133 R PFAM: Streptomyces cyclase/dehydrase; KEGG: afr:AFE_0280 hypothetical protein; cyclase/dehydrase complement(2725642..2726133) Acidithiobacillus ferrivorans SS3 11043474 YP_004785155.1 CDS Acife_2752 NC_015942.1 2726143 2727312 R KEGG: afe:Lferr_0455 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase complement(2726143..2727312) Acidithiobacillus ferrivorans SS3 11043475 YP_004785156.1 CDS Acife_2753 NC_015942.1 2727440 2727904 D TIGRFAM: SsrA-binding protein; HAMAP: SsrA-binding protein; KEGG: afr:AFE_0277 SsrA-binding protein; PFAM: SsrA-binding protein; SsrA-binding protein 2727440..2727904 Acidithiobacillus ferrivorans SS3 11043476 YP_004785157.1 CDS Acife_2754 NC_015942.1 2727897 2729594 D PFAM: Glycosyl transferase, family 39; KEGG: afr:AFE_0276 dolichyl-phosphate-mannose-protein mannosyltransferase family protein; glycosyl transferase family protein 2727897..2729594 Acidithiobacillus ferrivorans SS3 11044573 YP_004785158.1 CDS Acife_2756 NC_015942.1 2729773 2730285 D PFAM: Disulphide bond formation protein DsbB; KEGG: afr:AFE_0274 disulfide bond formation protein B, putative; disulfide bond formation protein DsbB 2729773..2730285 Acidithiobacillus ferrivorans SS3 11044574 YP_004785159.1 CDS Acife_2757 NC_015942.1 2730320 2731453 R KEGG: afr:AFE_0273 phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; phosphoribosylaminoimidazole carboxylase, ATPase subunit complement(2730320..2731453) Acidithiobacillus ferrivorans SS3 11044575 YP_004785160.1 CDS Acife_2758 NC_015942.1 2731450 2731947 R KEGG: afr:AFE_0272 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit complement(2731450..2731947) Acidithiobacillus ferrivorans SS3 11043478 YP_004785161.1 CDS Acife_2759 NC_015942.1 2731989 2732681 D TIGRFAM: tRNA (guanine-N-7) methyltransferase; HAMAP: tRNA (guanine-N(7)-)-methyltransferase; KEGG: afe:Lferr_0448 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 2731989..2732681 Acidithiobacillus ferrivorans SS3 11043479 YP_004785162.1 CDS Acife_2761 NC_015942.1 2732911 2734083 R KEGG: afr:AFE_0266 glycosyl transferase, group 2 family protein; TIGRFAM: Glycosyl transferase, family 2, hopene-associated, HpnB; PFAM: Glycosyl transferase, family 2; hopene-associated glycosyltransferase HpnB complement(2732911..2734083) Acidithiobacillus ferrivorans SS3 11043481 YP_004785163.1 CDS Acife_2762 NC_015942.1 2734080 2735210 R KEGG: afr:AFE_0265 twitching motility protein PilT; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; twitching motility protein complement(2734080..2735210) Acidithiobacillus ferrivorans SS3 11043482 YP_004785164.1 CDS Acife_2763 NC_015942.1 2735220 2736269 R TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: afr:AFE_0264 twitching motility protein PilT; SMART: ATPase, AAA+ type, core; twitching motility protein complement(2735220..2736269) Acidithiobacillus ferrivorans SS3 11044576 YP_004785165.1 CDS Acife_2764 NC_015942.1 2736371 2737042 D KEGG: afr:AFE_0263 conserved hypothetical protein TIGR00044; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal; hypothetical protein 2736371..2737042 Acidithiobacillus ferrivorans SS3 11043483 YP_004785166.1 CDS Acife_2765 NC_015942.1 2737039 2737866 D KEGG: afr:AFE_0262 pyrroline-5-carboxylate reductase; TIGRFAM: Delta 1-pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; pyrroline-5-carboxylate reductase 2737039..2737866 Acidithiobacillus ferrivorans SS3 11043484 YP_004785167.1 CDS Acife_2766 NC_015942.1 2737863 2738141 D PFAM: Protein of unknown function YGGT; KEGG: afr:AFE_0261 YGGT family protein; hypothetical protein 2737863..2738141 Acidithiobacillus ferrivorans SS3 11043485 YP_004785168.1 CDS Acife_2767 NC_015942.1 2738166 2738516 D TIGRFAM: Conserved hypothetical protein CHP00251; HAMAP: Protein of unknown function DUF167; KEGG: afr:AFE_0260 conserved hypothetical protein TIGR00251, putative; PFAM: Protein of unknown function DUF167; hypothetical protein 2738166..2738516 Acidithiobacillus ferrivorans SS3 11044577 YP_004785169.1 CDS Acife_2768 NC_015942.1 2738513 2739463 D SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Biotin synthase; KEGG: afr:AFE_0259 biotin synthase; HAMAP: Biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; biotin synthase 2738513..2739463 Acidithiobacillus ferrivorans SS3 11043486 YP_004785170.1 CDS Acife_2769 NC_015942.1 2739505 2740074 R PFAM: Lipid A 3-O-deacylase-related; KEGG: afr:AFE_0258 hypothetical protein; Lipid A 3-O-deacylase-like protein complement(2739505..2740074) Acidithiobacillus ferrivorans SS3 11043487 YP_004785171.1 CDS Acife_2770 NC_015942.1 2740314 2741330 D PFAM: Secretion protein HlyD; KEGG: afr:AFE_0257 secretion protein, HlyD family; secretion protein HlyD family protein 2740314..2741330 Acidithiobacillus ferrivorans SS3 11043488 YP_004785172.1 CDS Acife_2771 NC_015942.1 2741340 2742203 R KEGG: afr:AFE_0256 acetylglutamate kinase; TIGRFAM: Acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase; acetylglutamate kinase complement(2741340..2742203) Acidithiobacillus ferrivorans SS3 11043489 YP_004785173.1 CDS Acife_2772 NC_015942.1 2742200 2742847 R PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: afr:AFE_0255 transcriptional regulator, TetR family; TetR family transcriptional regulator complement(2742200..2742847) Acidithiobacillus ferrivorans SS3 11043490 YP_004785174.1 CDS Acife_2773 NC_015942.1 2743035 2743973 D KEGG: afr:AFE_0254 hypothetical protein; hypothetical protein 2743035..2743973 Acidithiobacillus ferrivorans SS3 11043491 YP_004785175.1 CDS Acife_2774 NC_015942.1 2743966 2744277 D KEGG: afe:Lferr_0430 hypothetical protein; hypothetical protein 2743966..2744277 Acidithiobacillus ferrivorans SS3 11043492 YP_004785176.1 CDS Acife_2775 NC_015942.1 2744357 2744725 R KEGG: afr:AFE_0253 hypothetical protein; hypothetical protein complement(2744357..2744725) Acidithiobacillus ferrivorans SS3 11043493 YP_004785177.1 CDS Acife_2776 NC_015942.1 2744788 2745804 R PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; Ferredoxin; KEGG: afr:AFE_0252 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase, putative; oxidoreductase FAD/NAD(P)-binding domain-containing protein complement(2744788..2745804) Acidithiobacillus ferrivorans SS3 11043494 YP_004785178.1 CDS Acife_2777 NC_015942.1 2745879 2746484 R SMART: Exonuclease; TIGRFAM: Ribonuclease T; KEGG: afr:AFE_0251 ribonuclease T; HAMAP: Ribonuclease T; PFAM: Exonuclease, RNase T/DNA polymerase III; ribonuclease T complement(2745879..2746484) Acidithiobacillus ferrivorans SS3 11043495 YP_004785179.1 CDS Acife_2778 NC_015942.1 2746492 2747271 R KEGG: afr:AFE_0250 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00245; PFAM: Conserved hypothetical protein CHP00245; hypothetical protein complement(2746492..2747271) Acidithiobacillus ferrivorans SS3 11044578 YP_004785180.1 CDS Acife_2779 NC_015942.1 2747268 2747978 R KEGG: afr:AFE_0249 arginine-tRNA--protein transferase; HAMAP: Arginine-tRNA-protein transferase, predicted, prokaryotic; PFAM: Arginine-tRNA-protein transferase, C-terminal; Arginine-tRNA-protein transferase, N-terminal; arginyl-tRNA--protein transferase complement(2747268..2747978) Acidithiobacillus ferrivorans SS3 11043496 YP_004785181.1 CDS Acife_2780 NC_015942.1 2747981 2748700 R TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase; KEGG: afr:AFE_0248 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; leucyl/phenylalanyl-tRNA--protein transferase complement(2747981..2748700) Acidithiobacillus ferrivorans SS3 11044579 YP_004785182.1 CDS Acife_2781 NC_015942.1 2748753 2749649 R PFAM: Peptidase M48, Ste24p; Peptidase M48B, HtpX peptidase N-terminal; KEGG: afr:AFE_0247 heat shock protein HtpX; peptidase M48 Ste24p complement(2748753..2749649) Acidithiobacillus ferrivorans SS3 11044580 YP_004785183.1 CDS Acife_2782 NC_015942.1 2749767 2750471 R KEGG: afr:AFE_0246 dethiobiotin synthetase; TIGRFAM: Dethiobiotin synthase; HAMAP: Dethiobiotin synthase; dethiobiotin synthetase complement(2749767..2750471) Acidithiobacillus ferrivorans SS3 11043497 YP_004785184.1 CDS Acife_2783 NC_015942.1 2750468 2751346 R KEGG: afr:AFE_0245 biotin synthesis protein BioC; TIGRFAM: Biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; biotin biosynthesis protein BioC complement(2750468..2751346) Acidithiobacillus ferrivorans SS3 11043498 YP_004785185.1 CDS Acife_2784 NC_015942.1 2751343 2752104 R PFAM: Alpha/beta hydrolase fold-1; KEGG: afr:AFE_0244 BioH protein; alpha/beta hydrolase fold domain-containing protein complement(2751343..2752104) Acidithiobacillus ferrivorans SS3 11043499 YP_004785186.1 CDS Acife_2785 NC_015942.1 2752101 2753270 R TIGRFAM: 8-amino-7-oxononanoate synthase; HAMAP: 8-amino-7-oxononanoate synthase; KEGG: afr:AFE_0243 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/II; 8-amino-7-oxononanoate synthase complement(2752101..2753270) Acidithiobacillus ferrivorans SS3 11043500 YP_004785187.1 CDS Acife_2786 NC_015942.1 2753387 2754100 D PFAM: Phosphoribosyltransferase; KEGG: afr:AFE_0242 competence protein; phosphoribosyltransferase 2753387..2754100 Acidithiobacillus ferrivorans SS3 11043501 YP_004785188.1 CDS Acife_2787 NC_015942.1 2754108 2754587 D KEGG: afr:AFE_0241 RNA methyltransferase, TrmH family, group 2; TIGRFAM: RNA methyltransferase TrmH, group 2; PFAM: tRNA/rRNA methyltransferase, SpoU; TrmH family RNA methyltransferase 2754108..2754587 Acidithiobacillus ferrivorans SS3 11044581 YP_004785189.1 CDS Acife_2788 NC_015942.1 2754741 2756849 D PFAM: Sulphatase-modifying factor; Methyltransferase type 11; KEGG: afr:AFE_0240 hypothetical protein; sulfatase-modifying factor protein 2754741..2756849 Acidithiobacillus ferrivorans SS3 11043502 YP_004785190.1 CDS Acife_2789 NC_015942.1 2756846 2758003 D PFAM: Aminotransferase, class I/II; KEGG: afr:AFE_0239 aminotransferase, class II; class I and II aminotransferase 2756846..2758003 Acidithiobacillus ferrivorans SS3 11043503 YP_004785191.1 CDS Acife_2790 NC_015942.1 2758106 2759014 D PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: afr:AFE_0238 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis acyltransferase 2758106..2759014 Acidithiobacillus ferrivorans SS3 11043504 YP_004785192.1 CDS Acife_2791 NC_015942.1 2759020 2760273 R PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; KEGG: afr:AFE_0237 3-deoxy-D-manno-octulosonic-acid transferase; Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein complement(2759020..2760273) Acidithiobacillus ferrivorans SS3 11043505 YP_004785193.1 CDS Acife_2792 NC_015942.1 2760270 2760950 R KEGG: afr:AFE_0236 hypothetical protein; protein tyrosine/serine phosphatase complement(2760270..2760950) Acidithiobacillus ferrivorans SS3 11044582 YP_004785194.1 CDS Acife_2793 NC_015942.1 2760953 2761999 R KEGG: afr:AFE_0235 lipopolysaccharide heptosyltransferase 1; TIGRFAM: Lipopolysaccharide heptosyltransferase I; PFAM: Glycosyl transferase, family 9; lipopolysaccharide heptosyltransferase I complement(2760953..2761999) Acidithiobacillus ferrivorans SS3 11044583 YP_004785195.1 CDS Acife_2794 NC_015942.1 2761996 2762766 R PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_0234 lipopolysaccharide core biosynthesis glycosyl transferase; family 2 glycosyl transferase complement(2761996..2762766) Acidithiobacillus ferrivorans SS3 11043506 YP_004785196.1 CDS Acife_2795 NC_015942.1 2762766 2763977 R KEGG: afr:AFE_0232 O-antigen polymerase family protein; O-antigen polymerase family protein complement(2762766..2763977) Acidithiobacillus ferrivorans SS3 11044584 YP_004785197.1 CDS Acife_2796 NC_015942.1 2763974 2765077 R PFAM: Glycosyl transferase, family 9; KEGG: tal:Thal_0153 glycosyl transferase family 9; glycosyl transferase family protein complement(2763974..2765077) Acidithiobacillus ferrivorans SS3 11043507 YP_004785198.1 CDS Acife_2797 NC_015942.1 2765089 2765226 R hypothetical protein complement(2765089..2765226) Acidithiobacillus ferrivorans SS3 11043508 YP_004785199.1 CDS Acife_2798 NC_015942.1 2765286 2766362 R PFAM: Glycosyl transferase, group 1; KEGG: afe:Lferr_0406 group 1 glycosyl transferase; group 1 glycosyl transferase complement(2765286..2766362) Acidithiobacillus ferrivorans SS3 11044585 YP_004785200.1 CDS Acife_2799 NC_015942.1 2766359 2767075 R PFAM: Polysaccharide deacetylase; KEGG: afr:AFE_0229 polysaccharide deacetylase family protein; polysaccharide deacetylase complement(2766359..2767075) Acidithiobacillus ferrivorans SS3 11043509 YP_004785201.1 CDS Acife_2800 NC_015942.1 2767072 2768034 R PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_0228 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase complement(2767072..2768034) Acidithiobacillus ferrivorans SS3 11043510 YP_004785202.1 CDS Acife_2801 NC_015942.1 2768035 2769024 R KEGG: afr:AFE_0227 mutator MutT protein/thiamine-phosphate pyrophosphorylase family protein; TIGRFAM: Mutator MutT protein; PFAM: NUDIX hydrolase domain; Thiamine monophosphate synthase; mutator MutT protein complement(2768035..2769024) Acidithiobacillus ferrivorans SS3 11044586 YP_004785203.1 CDS Acife_2802 NC_015942.1 2769024 2770250 R TIGRFAM: Arginine biosynthesis protein ArgJ; HAMAP: Arginine biosynthesis protein ArgJ; KEGG: afr:AFE_0226 arginine biosynthesis bifunctional protein ArgJ; PFAM: Arginine biosynthesis protein ArgJ; arginine biosynthesis bifunctional protein ArgJ complement(2769024..2770250) Acidithiobacillus ferrivorans SS3 11043511 YP_004785204.1 CDS Acife_2803 NC_015942.1 2770260 2773004 R TIGRFAM: SecA protein; HAMAP: Protein translocase subunit secA; KEGG: afr:AFE_0225 preprotein translocase, SecA subunit; PFAM: SecA DEAD-like; SecA preprotein cross-linking region; SecA Wing/Scaffold; SEC-C motif; protein translocase subunit secA complement(2770260..2773004) Acidithiobacillus ferrivorans SS3 11043512 YP_004785205.1 CDS Acife_2804 NC_015942.1 2773088 2773567 D PFAM: Protein of unknown function DUF721; KEGG: afe:Lferr_0400 hypothetical protein; hypothetical protein 2773088..2773567 Acidithiobacillus ferrivorans SS3 11044587 YP_004785206.1 CDS Acife_2805 NC_015942.1 2773507 2774472 R TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; HAMAP: UDP-3-O-acyl N-acetylglucosamine deacetylase; KEGG: afr:AFE_0223 UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase complement(2773507..2774472) Acidithiobacillus ferrivorans SS3 11043513 YP_004785207.1 CDS Acife_2806 NC_015942.1 2774722 2775342 D PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: afr:AFE_0221 stringent starvation protein A; glutathione S-transferase domain-containing protein 2774722..2775342 Acidithiobacillus ferrivorans SS3 11043514 YP_004785208.1 CDS Acife_2807 NC_015942.1 2775344 2777071 D PFAM: AMP-dependent synthetase/ligase; KEGG: afe:Lferr_0397 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2775344..2777071 Acidithiobacillus ferrivorans SS3 11044588 YP_004785209.1 CDS Acife_2808 NC_015942.1 2777081 2778451 D PFAM: Polynucleotide adenylyltransferase region; KEGG: afr:AFE_0218 polyA polymerase family protein; polynucleotide adenylyltransferase protein 2777081..2778451 Acidithiobacillus ferrivorans SS3 11043515 YP_004785210.1 CDS Acife_2809 NC_015942.1 2778396 2778662 R KEGG: afr:AFE_0219 hypothetical protein; hypothetical protein complement(2778396..2778662) Acidithiobacillus ferrivorans SS3 11043516 YP_004785211.1 CDS Acife_2810 NC_015942.1 2779475 2779930 D TIGRFAM: MraZ; HAMAP: MraZ; KEGG: afr:AFE_0215 MraZ protein; PFAM: MraZ domain; protein mraZ 2779475..2779930 Acidithiobacillus ferrivorans SS3 11043518 YP_004785212.1 CDS Acife_2811 NC_015942.1 2779927 2780892 D TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: afr:AFE_0214 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; ribosomal RNA small subunit methyltransferase H 2779927..2780892 Acidithiobacillus ferrivorans SS3 11043519 YP_004785213.1 CDS Acife_2812 NC_015942.1 2780882 2781145 D KEGG: afr:AFE_0213 cell division protein FtsL; TIGRFAM: Cell division protein, FtsL -like; PFAM: Cell division protein FtsL; cell division protein FtsL 2780882..2781145 Acidithiobacillus ferrivorans SS3 11043520 YP_004785214.1 CDS Acife_2813 NC_015942.1 2781142 2782926 D PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: afr:AFE_0212 peptidoglycan synthetase FtsI; penicillin-binding protein transpeptidase 2781142..2782926 Acidithiobacillus ferrivorans SS3 11044589 YP_004785215.1 CDS Acife_2814 NC_015942.1 2782913 2784361 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: afr:AFE_0211 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 2782913..2784361 Acidithiobacillus ferrivorans SS3 11043521 YP_004785216.1 CDS Acife_2815 NC_015942.1 2784358 2785710 D KEGG: afr:AFE_0210 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 2784358..2785710 Acidithiobacillus ferrivorans SS3 11044590 YP_004785217.1 CDS Acife_2816 NC_015942.1 2785710 2786792 D TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; KEGG: afr:AFE_0209 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; phospho-N-acetylmuramoyl-pentapeptide- transferase 2785710..2786792 Acidithiobacillus ferrivorans SS3 11043522 YP_004785218.1 CDS Acife_2817 NC_015942.1 2786794 2788140 D TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; KEGG: afr:AFE_0208 UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal; UDP-N-acetylmuramoylalanine--D-glutamate ligase 2786794..2788140 Acidithiobacillus ferrivorans SS3 11043523 YP_004785219.1 CDS Acife_2818 NC_015942.1 2788137 2789309 D KEGG: afr:AFE_0207 cell division protein FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein; cell division protein FtsW 2788137..2789309 Acidithiobacillus ferrivorans SS3 11044591 YP_004785220.1 CDS Acife_2819 NC_015942.1 2789302 2790384 D TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; KEGG: afr:AFE_0206 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyl transferase, family 28; Glycosyl transferase, family 28, C-terminal; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 2789302..2790384 Acidithiobacillus ferrivorans SS3 11043524 YP_004785221.1 CDS Acife_2820 NC_015942.1 2790377 2791771 D TIGRFAM: UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; KEGG: afr:AFE_0205 UDP-N-acetylmuramate--alanine ligase; PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal; UDP-N-acetylmuramate--L-alanine ligase 2790377..2791771 Acidithiobacillus ferrivorans SS3 11043525 YP_004785222.1 CDS Acife_2821 NC_015942.1 2791768 2792655 D TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: afr:AFE_0204 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; UDP-N-acetylenolpyruvoylglucosamine reductase 2791768..2792655 Acidithiobacillus ferrivorans SS3 11044592 YP_004785223.1 CDS Acife_2822 NC_015942.1 2792648 2793574 D TIGRFAM: D-alanine--D-alanine ligase; HAMAP: D-alanine--D-alanine ligase; KEGG: afr:AFE_0203 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; D-alanine--D-alanine ligase 2792648..2793574 Acidithiobacillus ferrivorans SS3 11043526 YP_004785224.1 CDS Acife_2823 NC_015942.1 2793567 2794406 D PFAM: Cell division protein FtsQ; Polypeptide-transport-associated, FtsQ-type; KEGG: afr:AFE_0202 cell division protein FtsQ; cell division protein FtsQ 2793567..2794406 Acidithiobacillus ferrivorans SS3 11043527 YP_004785225.1 CDS Acife_2824 NC_015942.1 2794437 2795705 D KEGG: afr:AFE_0201 cell division protein FtsA; TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain; cell division protein FtsA 2794437..2795705 Acidithiobacillus ferrivorans SS3 11043528 YP_004785226.1 CDS Acife_2825 NC_015942.1 2795764 2796927 D KEGG: afr:AFE_0200 cell division protein FtsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; cell division protein FtsZ 2795764..2796927 Acidithiobacillus ferrivorans SS3 11044593 YP_004785227.1 CDS Acife_2826 NC_015942.1 2796944 2797369 R KEGG: tkm:TK90_0226 leucine-rich repeat-containing protein; leucine-rich repeat-containing protein complement(2796944..2797369) Acidithiobacillus ferrivorans SS3 11043529 YP_004785228.1 CDS Acife_2827 NC_015942.1 2797423 2798280 R KEGG: afr:AFE_0199 hypothetical protein; hypothetical protein complement(2797423..2798280) Acidithiobacillus ferrivorans SS3 11043530 YP_004785229.1 CDS Acife_2828 NC_015942.1 2798553 2799014 D TIGRFAM: Dehydroquinase, class II; HAMAP: Dehydroquinase, class II; KEGG: afr:AFE_0197 3-dehydroquinate dehydratase; PFAM: Dehydroquinase, class II; 3-dehydroquinate dehydratase 2798553..2799014 Acidithiobacillus ferrivorans SS3 11044594 YP_004785230.1 CDS Acife_2829 NC_015942.1 2799034 2799510 D KEGG: afr:AFE_0196 acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment; acetyl-CoA carboxylase, biotin carboxyl carrier protein 2799034..2799510 Acidithiobacillus ferrivorans SS3 11043531 YP_004785231.1 CDS Acife_2830 NC_015942.1 2799503 2800849 D KEGG: afr:AFE_0195 acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; acetyl-CoA carboxylase, biotin carboxylase 2799503..2800849 Acidithiobacillus ferrivorans SS3 11043532 YP_004785232.1 CDS Acife_2831 NC_015942.1 2800846 2801724 D TIGRFAM: Ribosomal protein L11 methyltransferase; HAMAP: Ribosomal protein L11 methyltransferase; KEGG: afr:AFE_0194 ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase; 50S ribosomal protein L11 methyltransferase 2800846..2801724 Acidithiobacillus ferrivorans SS3 11043533 YP_004785233.1 CDS Acife_2832 NC_015942.1 2801727 2802359 D KEGG: afr:AFE_0193 MJ0042 family finger-like domain protein; hypothetical protein 2801727..2802359 Acidithiobacillus ferrivorans SS3 11044595 YP_004785234.1 CDS Acife_2833 NC_015942.1 2802372 2802614 D PFAM: Helix-turn-helix, Fis-type; KEGG: afr:AFE_0191 transcriptional regulator, Fis family; Fis family transcriptional regulator 2802372..2802614 Acidithiobacillus ferrivorans SS3 11043534 YP_004785235.1 CDS Acife_2834 NC_015942.1 2802596 2803261 R PFAM: Lytic transglycosylase-like, catalytic; KEGG: afr:AFE_0192 transglycosylase, putative; lytic transglycosylase complement(2802596..2803261) Acidithiobacillus ferrivorans SS3 11043535 YP_004785236.1 CDS Acife_2835 NC_015942.1 2803258 2803674 R PFAM: Stringent starvation protein B; KEGG: afr:AFE_0190 stringent starvation protein B; Stringent starvation protein B complement(2803258..2803674) Acidithiobacillus ferrivorans SS3 11043536 YP_004785237.1 CDS Acife_2836 NC_015942.1 2804131 2804913 D PFAM: Polysaccharide deacetylase; KEGG: afr:AFE_0787 polysaccharide deacetylase family protein; polysaccharide deacetylase 2804131..2804913 Acidithiobacillus ferrivorans SS3 11043537 YP_004785238.1 CDS Acife_2837 NC_015942.1 2804961 2806283 D PFAM: Monooxygenase, FAD-binding; KEGG: afr:AFE_0788 non-heme halogenase, putative; FAD-binding monooxygenase 2804961..2806283 Acidithiobacillus ferrivorans SS3 11043538 YP_004785239.1 CDS Acife_2838 NC_015942.1 2806286 2807350 D KEGG: afr:AFE_0789 dioxygenase, putative; dioxygenase 2806286..2807350 Acidithiobacillus ferrivorans SS3 11043539 YP_004785240.1 CDS Acife_2839 NC_015942.1 2807634 2808062 D KEGG: xac:XAC3351 hypothetical protein; hypothetical protein 2807634..2808062 Acidithiobacillus ferrivorans SS3 11044596 YP_004785241.1 CDS Acife_2840 NC_015942.1 2808314 2809093 D KEGG: afr:AFE_0790 acyltransferase, putative; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2808314..2809093 Acidithiobacillus ferrivorans SS3 11043540 YP_004785242.1 CDS Acife_2841 NC_015942.1 2809093 2809857 D PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_0792 glycosyl transferase, group 2; family 2 glycosyl transferase 2809093..2809857 Acidithiobacillus ferrivorans SS3 11043541 YP_004785243.1 CDS Acife_2842 NC_015942.1 2809887 2811185 R PFAM: Cation/H+ exchanger; KEGG: afr:AFE_0791 Na+/H+ antiporter, putative; sodium/hydrogen exchanger complement(2809887..2811185) Acidithiobacillus ferrivorans SS3 11044597 YP_004785244.1 CDS Acife_2843 NC_015942.1 2811202 2811924 R PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_0793 3-ketoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR complement(2811202..2811924) Acidithiobacillus ferrivorans SS3 11043542 YP_004785245.1 CDS Acife_2844 NC_015942.1 2811917 2812375 R KEGG: afr:AFE_0794 hypothetical protein; hypothetical protein complement(2811917..2812375) Acidithiobacillus ferrivorans SS3 11043543 YP_004785246.1 CDS Acife_2845 NC_015942.1 2812366 2813175 R KEGG: afr:AFE_0795 hypothetical protein; hypothetical protein complement(2812366..2813175) Acidithiobacillus ferrivorans SS3 11044598 YP_004785247.1 CDS Acife_2846 NC_015942.1 2813193 2814386 R PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal; KEGG: afr:AFE_0796 3-oxoacyl-(acyl carrier protein) synthase I; beta-ketoacyl synthase complement(2813193..2814386) Acidithiobacillus ferrivorans SS3 11043544 YP_004785248.1 CDS Acife_2847 NC_015942.1 2814702 2814965 D KEGG: afr:AFE_0797 acyl carrier protein, putative; acyl carrier protein 2814702..2814965 Acidithiobacillus ferrivorans SS3 11043545 YP_004785249.1 CDS Acife_2848 NC_015942.1 2814999 2817365 R KEGG: afr:AFE_0798 hypothetical protein; hypothetical protein complement(2814999..2817365) Acidithiobacillus ferrivorans SS3 11043546 YP_004785250.1 CDS Acife_2849 NC_015942.1 2817362 2818042 R KEGG: afe:Lferr_0942 putative transmembrane protein; hypothetical protein complement(2817362..2818042) Acidithiobacillus ferrivorans SS3 11043547 YP_004785251.1 CDS Acife_2850 NC_015942.1 2818039 2818998 R PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: afe:Lferr_0943 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase complement(2818039..2818998) Acidithiobacillus ferrivorans SS3 11043548 YP_004785252.1 CDS Acife_2852 NC_015942.1 2819302 2820663 R PFAM: AMP-dependent synthetase/ligase; KEGG: afr:AFE_0802 AMP-binding protein; AMP-dependent synthetase and ligase complement(2819302..2820663) Acidithiobacillus ferrivorans SS3 11044599 YP_004785253.1 CDS Acife_2853 NC_015942.1 2820711 2821424 R KEGG: afr:AFE_0803 hypothetical protein; hypothetical protein complement(2820711..2821424) Acidithiobacillus ferrivorans SS3 11043550 YP_004785254.1 CDS Acife_2854 NC_015942.1 2821532 2821852 R KEGG: afr:AFE_0804 hypothetical protein; hypothetical protein complement(2821532..2821852) Acidithiobacillus ferrivorans SS3 11043551 YP_004785255.1 CDS Acife_2855 NC_015942.1 2821942 2822952 R KEGG: afr:AFE_0189 fructose-1,6-bisphosphatase; HAMAP: Fructose-1,6-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase; fructose-1,6-bisphosphatase class 1 complement(2821942..2822952) Acidithiobacillus ferrivorans SS3 11043552 YP_004785256.1 CDS Acife_2856 NC_015942.1 2822986 2823738 R PFAM: Protein of unknown function DUF1342; KEGG: afr:AFE_0188 hypothetical protein; hypothetical protein complement(2822986..2823738) Acidithiobacillus ferrivorans SS3 11043553 YP_004785257.1 CDS Acife_2857 NC_015942.1 2823855 2824457 R KEGG: afr:AFE_0187 dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; Dephospho-CoA kinase complement(2823855..2824457) Acidithiobacillus ferrivorans SS3 11044600 YP_004785258.1 CDS Acife_2858 NC_015942.1 2824458 2825243 R PFAM: Peptidase A24A, N-terminal; Peptidase A24A, prepilin type IV; KEGG: afr:AFE_0186 type IV pilus prepilin peptidase PilD; peptidase A24A domain-containing protein complement(2824458..2825243) Acidithiobacillus ferrivorans SS3 11043554 YP_004785259.1 CDS Acife_2859 NC_015942.1 2825255 2826613 R KEGG: afe:Lferr_0364 two component sigma-54 specific fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; two component sigma-54 specific Fis family transcriptional regulator complement(2825255..2826613) Acidithiobacillus ferrivorans SS3 11043555 YP_004785260.1 CDS Acife_2860 NC_015942.1 2826610 2828208 R KEGG: afr:AFE_0184 sensor protein PilS, putative; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; multi-sensor signal transduction histidine kinase complement(2826610..2828208) Acidithiobacillus ferrivorans SS3 11044601 YP_004785261.1 CDS Acife_2861 NC_015942.1 2828332 2830041 R TIGRFAM: ATPase, type IV, pilus assembly, PilB; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: afr:AFE_0183 type IV pilus assembly protein; SMART: ATPase, AAA+ type, core; type IV-A pilus assembly ATPase PilB complement(2828332..2830041) Acidithiobacillus ferrivorans SS3 11043556 YP_004785262.1 CDS Acife_2862 NC_015942.1 2830011 2830910 R TIGRFAM: Quinate/shikimate 5-dehydrogenase; HAMAP: Shikimate dehydrogenase; KEGG: afr:AFE_0182 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; shikimate dehydrogenase complement(2830011..2830910) Acidithiobacillus ferrivorans SS3 11043557 YP_004785263.1 CDS Acife_2863 NC_015942.1 2830888 2832069 R KEGG: afr:AFE_0181 anhydro-N-acetylmuramic acid kinase; HAMAP: Anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase; Anhydro-N-acetylmuramic acid kinase complement(2830888..2832069) Acidithiobacillus ferrivorans SS3 11044602 YP_004785264.1 CDS Acife_2864 NC_015942.1 2832119 2832607 R PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: afr:AFE_0180 peptidyl-prolyl cis-trans isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase complement(2832119..2832607) Acidithiobacillus ferrivorans SS3 11043558 YP_004785265.1 CDS Acife_2865 NC_015942.1 2832670 2833683 R TIGRFAM: Ferrochelatase; HAMAP: Ferrochelatase; KEGG: afr:AFE_0179 ferrochelatase; PFAM: Ferrochelatase; ferrochelatase complement(2832670..2833683) Acidithiobacillus ferrivorans SS3 11043559 YP_004785266.1 CDS Acife_2866 NC_015942.1 2833680 2834453 R KEGG: afr:AFE_0178 exodeoxyribonuclease III; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth complement(2833680..2834453) Acidithiobacillus ferrivorans SS3 11044603 YP_004785267.1 CDS Acife_2867 NC_015942.1 2834459 2835061 R PFAM: Glutathione S-transferase, N-terminal; KEGG: afr:AFE_0177 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein complement(2834459..2835061) Acidithiobacillus ferrivorans SS3 11043560 YP_004785268.1 CDS Acife_2868 NC_015942.1 2835154 2835990 D PFAM: Protein of unknown function DUF519; KEGG: afr:AFE_0176 hypothetical protein; hypothetical protein 2835154..2835990 Acidithiobacillus ferrivorans SS3 11043561 YP_004785269.1 CDS Acife_2869 NC_015942.1 2836065 2836349 D KEGG: afr:AFE_0175 hypothetical protein; hypothetical protein 2836065..2836349 Acidithiobacillus ferrivorans SS3 11044604 YP_004785270.1 CDS Acife_2870 NC_015942.1 2836362 2837123 D KEGG: afr:AFE_0174 exodeoxyribonuclease III; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 2836362..2837123 Acidithiobacillus ferrivorans SS3 11043562 YP_004785271.1 CDS Acife_2871 NC_015942.1 2837124 2838035 D KEGG: afr:AFE_0173 ribosomal protein L3 N-methyltransferase; TIGRFAM: Ribosomal protein L3-specific, glutamine-N5-methyltransferase; Modification methylase HemK; PFAM: Methyltransferase small; protein-(glutamine-N5) methyltransferase, 50S ribosomal protein L3-specific 2837124..2838035 Acidithiobacillus ferrivorans SS3 11043563 YP_004785272.1 CDS Acife_2872 NC_015942.1 2838154 2839716 D PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_0171 drug resistance transporter,putative, EmrB/QacA subfamily; major facilitator superfamily protein 2838154..2839716 Acidithiobacillus ferrivorans SS3 11043564 YP_004785273.1 CDS Acife_2873 NC_015942.1 2839638 2840561 R PFAM: Mechanosensitive ion channel MscS; KEGG: sde:Sde_3910 hypothetical protein; mechanosensitive ion channel MscS complement(2839638..2840561) Acidithiobacillus ferrivorans SS3 11044605 YP_004785274.1 CDS Acife_2874 NC_015942.1 2840665 2842404 D TIGRFAM: Arginyl-tRNA synthetase, class Ic; HAMAP: Arginyl-tRNA synthetase, class Ic; KEGG: afr:AFE_0170 arginyl-tRNA synthetase; arginyl-tRNA synthetase 2840665..2842404 Acidithiobacillus ferrivorans SS3 11043565 YP_004785275.1 CDS Acife_2875 NC_015942.1 2842411 2843241 D PFAM: Sporulation/cell division region, bacteria; KEGG: afr:AFE_0168 hypothetical protein; sporulation domain-containing protein 2842411..2843241 Acidithiobacillus ferrivorans SS3 11043566 YP_004785276.1 CDS Acife_2876 NC_015942.1 2843207 2843674 R PFAM: Protein of unknown function DUF1790; KEGG: afr:AFE_0169 hypothetical protein; hypothetical protein complement(2843207..2843674) Acidithiobacillus ferrivorans SS3 11044606 YP_004785277.1 CDS Acife_2877 NC_015942.1 2843671 2844477 R SMART: Ribosomal RNA adenine methylase transferase, N-terminal; TIGRFAM: Ribosomal RNA adenine dimethylase; KEGG: afe:Lferr_0346 dimethyladenosine transferase; HAMAP: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine methylase transferase; ribosomal RNA small subunit methyltransferase A complement(2843671..2844477) Acidithiobacillus ferrivorans SS3 11043567 YP_004785278.1 CDS Acife_2878 NC_015942.1 2844540 2845094 D KEGG: afr:AFE_0166 HNH endonuclease domain protein; PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease 2844540..2845094 Acidithiobacillus ferrivorans SS3 11043568 YP_004785279.1 CDS Acife_2879 NC_015942.1 2845115 2846116 R TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: afr:AFE_0165 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase complement(2845115..2846116) Acidithiobacillus ferrivorans SS3 11044607 YP_004785280.1 CDS Acife_2880 NC_015942.1 2846113 2846376 R KEGG: afr:AFE_0164 S4 domain protein; PFAM: RNA-binding S4; SMART: RNA-binding S4; RNA-binding S4 domain-containing protein complement(2846113..2846376) Acidithiobacillus ferrivorans SS3 11043569 YP_004785281.1 CDS Acife_2881 NC_015942.1 2846379 2847299 R KEGG: afr:AFE_0163 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter complement(2846379..2847299) Acidithiobacillus ferrivorans SS3 11043570 YP_004785282.1 CDS Acife_2882 NC_015942.1 2847292 2847579 R KEGG: afe:Lferr_0341 hypothetical protein; hypothetical protein complement(2847292..2847579) Acidithiobacillus ferrivorans SS3 11044608 YP_004785283.1 CDS Acife_2883 NC_015942.1 2847606 2848235 R PFAM: Toluene tolerance; KEGG: afr:AFE_0161 toluene tolerance protein, putative; toluene tolerance family protein complement(2847606..2848235) Acidithiobacillus ferrivorans SS3 11043571 YP_004785284.1 CDS Acife_2884 NC_015942.1 2848248 2848709 R PFAM: Mammalian cell entry related; KEGG: afr:AFE_0160 mce-related protein; mammalian cell entry related domain-containing protein complement(2848248..2848709) Acidithiobacillus ferrivorans SS3 11043572 YP_004785285.1 CDS Acife_2885 NC_015942.1 2848724 2849506 R KEGG: afr:AFE_0159 toluene tolerance protein Ttg2B, putative; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140; hypothetical protein complement(2848724..2849506) Acidithiobacillus ferrivorans SS3 11043573 YP_004785286.1 CDS Acife_2886 NC_015942.1 2849510 2850334 R KEGG: afr:AFE_0158 toluene ABC transporter, ATP-binding protein, putative; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter complement(2849510..2850334) Acidithiobacillus ferrivorans SS3 11043574 YP_004785287.1 CDS Acife_2887 NC_015942.1 2850645 2851046 D TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; HAMAP: S-adenosylmethionine decarboxylase proenzyme; KEGG: afr:AFE_0157 S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal; S-adenosylmethionine decarboxylase proenzyme 2850645..2851046 Acidithiobacillus ferrivorans SS3 11043575 YP_004785288.1 CDS Acife_2888 NC_015942.1 2851167 2852003 D TIGRFAM: Spermine synthase; HAMAP: Spermidine synthase; KEGG: afr:AFE_0156 spermidine synthase; PFAM: Spermine synthase; spermidine synthase 2851167..2852003 Acidithiobacillus ferrivorans SS3 11043576 YP_004785289.1 CDS Acife_2889 NC_015942.1 2852031 2852636 R PFAM: Phosphoglycerate mutase; KEGG: afr:AFE_0155 phosphoglycerate mutase family protein; phosphoglycerate mutase complement(2852031..2852636) Acidithiobacillus ferrivorans SS3 11043577 YP_004785290.1 CDS Acife_2890 NC_015942.1 2852833 2854212 R KEGG: afr:AFE_2955 sigma-54 dependent DNA-binding response regulator, putative; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; putative two component, sigma54 specific, transcriptional regulator complement(2852833..2854212) Acidithiobacillus ferrivorans SS3 11043578 YP_004785291.1 CDS Acife_2891 NC_015942.1 2854218 2854538 R KEGG: afr:AFE_2956 hypothetical protein; hypothetical protein complement(2854218..2854538) Acidithiobacillus ferrivorans SS3 11044609 YP_004785292.1 CDS Acife_2892 NC_015942.1 2854519 2856159 R KEGG: afe:Lferr_2570 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; integral membrane sensor signal transduction histidine kinase complement(2854519..2856159) Acidithiobacillus ferrivorans SS3 11043579 YP_004785293.1 CDS Acife_2893 NC_015942.1 2856159 2856431 R KEGG: afr:AFE_2959 hypothetical protein; HAMAP: Fe(II) trafficking protein YggX; PFAM: Fe(II) trafficking protein YggX; Fe(2+)-trafficking protein complement(2856159..2856431) Acidithiobacillus ferrivorans SS3 11043580 YP_004785294.1 CDS Acife_2894 NC_015942.1 2856563 2857672 R TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: afr:AFE_3015 A/G-specific adenine glycosylase; SMART: HhH-GPD domain; A/G-specific adenine glycosylase complement(2856563..2857672) Acidithiobacillus ferrivorans SS3 11043581 YP_004785295.1 CDS Acife_2895 NC_015942.1 2857669 2858913 R KEGG: afr:AFE_3017 hypothetical protein; hypothetical protein complement(2857669..2858913) Acidithiobacillus ferrivorans SS3 11043582 YP_004785296.1 CDS Acife_2896 NC_015942.1 2858933 2860645 R KEGG: afr:AFE_3018 phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile region; phosphoenolpyruvate-protein phosphotransferase complement(2858933..2860645) Acidithiobacillus ferrivorans SS3 11043583 YP_004785297.1 CDS Acife_2897 NC_015942.1 2860642 2860914 R KEGG: afr:AFE_3019 phosphocarrier protein HPr; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein; phosphotransferase system, phosphocarrier protein HPr complement(2860642..2860914) Acidithiobacillus ferrivorans SS3 11044610 YP_004785298.1 CDS Acife_2898 NC_015942.1 2860946 2861368 R PFAM: Phosphotransferase system, fructose subfamily IIA component; KEGG: afr:AFE_3020 PTS system, IIA component, putative; PTS system fructose subfamily IIA component complement(2860946..2861368) Acidithiobacillus ferrivorans SS3 11043584 YP_004785299.1 CDS Acife_2899 NC_015942.1 2861365 2862264 R HAMAP: ATPase, P-loop-containing; KEGG: afr:AFE_3021 ATPase; nucleotide-binding protein yhbJ complement(2861365..2862264) Acidithiobacillus ferrivorans SS3 11044611 YP_004785300.1 CDS Acife_2900 NC_015942.1 2862264 2863196 R PFAM: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, C-terminal; KEGG: afr:AFE_3022 HPr(Ser) kinase/phosphatase; HPr kinase complement(2862264..2863196) Acidithiobacillus ferrivorans SS3 11043585 YP_004785301.1 CDS Acife_2901 NC_015942.1 2863251 2863697 R PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: afr:AFE_3023 phosphoenolpyruvate-dependent sugar PTS system, EIIA component; putative PTS IIA-like nitrogen-regulatory protein PtsN complement(2863251..2863697) Acidithiobacillus ferrivorans SS3 11043586 YP_004785302.1 CDS Acife_2902 NC_015942.1 2863704 2864045 R KEGG: afr:AFE_3024 ribosomal subunit interface protein; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; sigma 54 modulation protein/30S ribosomal protein S30EA complement(2863704..2864045) Acidithiobacillus ferrivorans SS3 11044612 YP_004785303.1 CDS Acife_2903 NC_015942.1 2864157 2865584 R KEGG: afr:AFE_3025 RNA polymerase sigma-54 factor; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; RNA polymerase sigma-54 subunit RpoN complement(2864157..2865584) Acidithiobacillus ferrivorans SS3 11044613 YP_004785304.1 CDS Acife_2904 NC_015942.1 2865597 2866322 R KEGG: afr:AFE_3026 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter complement(2865597..2866322) Acidithiobacillus ferrivorans SS3 11043587 YP_004785305.1 CDS Acife_2905 NC_015942.1 2866319 2866849 R KEGG: afr:AFE_3027 hypothetical protein; TIGRFAM: Cell envelope biogenesis YhbN; PFAM: OstA-like protein; lipopolysaccharide transport periplasmic protein LptA complement(2866319..2866849) Acidithiobacillus ferrivorans SS3 11043588 YP_004785306.1 CDS Acife_2906 NC_015942.1 2866839 2867393 R PFAM: Protein of unknown function DUF1239; KEGG: afr:AFE_3028 hypothetical protein; hypothetical protein complement(2866839..2867393) Acidithiobacillus ferrivorans SS3 11044614 YP_004785307.1 CDS Acife_2907 NC_015942.1 2867434 2867988 R TIGRFAM: Phosphatase KdsC; HAD-superfamily hydrolase, subfamily IIIA; KEGG: afr:AFE_3029 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase complement(2867434..2867988) Acidithiobacillus ferrivorans SS3 11043589 YP_004785308.1 CDS Acife_2908 NC_015942.1 2867985 2868917 R TIGRFAM: KpsF/GutQ; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core; KEGG: afr:AFE_3030 sugar isomerase, KpsF/GutQ family; SMART: Cystathionine beta-synthase, core; KpsF/GutQ family protein complement(2867985..2868917) Acidithiobacillus ferrivorans SS3 11043590 YP_004785309.1 CDS Acife_2909 NC_015942.1 2868981 2869259 R KEGG: afe:Lferr_2639 hypothetical protein; hypothetical protein complement(2868981..2869259) Acidithiobacillus ferrivorans SS3 11043591 YP_004785310.1 CDS Acife_2910 NC_015942.1 2869292 2869726 R KEGG: afr:AFE_3031 hypothetical protein; hypothetical protein complement(2869292..2869726) Acidithiobacillus ferrivorans SS3 11043592 YP_004785311.1 CDS Acife_2911 NC_015942.1 2869716 2870405 R PFAM: Nucleotidyl transferase; KEGG: afr:AFE_3032 nucleotidyltransferase family protein; nucleotidyl transferase complement(2869716..2870405) Acidithiobacillus ferrivorans SS3 11043593 YP_004785312.1 CDS Acife_2912 NC_015942.1 2870378 2871403 R PFAM: Aminoglycoside phosphotransferase; KEGG: afr:AFE_3033 phosphotransferase, putative; aminoglycoside phosphotransferase complement(2870378..2871403) Acidithiobacillus ferrivorans SS3 11044615 YP_004785313.1 CDS Acife_2913 NC_015942.1 2871433 2873628 D PFAM: Organic solvent tolerance protein; OstA-like protein; KEGG: afe:Lferr_2643 organic solvent tolerance protein; Organic solvent tolerance protein 2871433..2873628 Acidithiobacillus ferrivorans SS3 11043594 YP_004785314.1 CDS Acife_2914 NC_015942.1 2873628 2875061 D KEGG: afe:Lferr_2644 SurA domain; HAMAP: Chaperone surA; PFAM: SurA N-terminal; Peptidyl-prolyl cis-trans isomerase, PpiC-type; chaperone surA 2873628..2875061 Acidithiobacillus ferrivorans SS3 11043595 YP_004785315.1 CDS Acife_2915 NC_015942.1 2875069 2875866 D PFAM: ABC-2 type transporter; KEGG: afr:AFE_3036 ABC-2 type transporter; ABC transporter 2875069..2875866 Acidithiobacillus ferrivorans SS3 11043596 YP_004785316.1 CDS Acife_2916 NC_015942.1 2875964 2876218 D PFAM: BolA-like protein; KEGG: afr:AFE_3037 BolA family protein; BolA family protein 2875964..2876218 Acidithiobacillus ferrivorans SS3 11043597 YP_004785317.1 CDS Acife_2917 NC_015942.1 2876254 2876586 D KEGG: afr:AFE_3038 glutaredoxin-related protein; TIGRFAM: Glutaredoxin-related protein; PFAM: Glutaredoxin; glutaredoxin-like protein 2876254..2876586 Acidithiobacillus ferrivorans SS3 11044616 YP_004785318.1 CDS Acife_2918 NC_015942.1 2876596 2877870 D TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: afr:AFE_3039 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2876596..2877870 Acidithiobacillus ferrivorans SS3 11043598 YP_004785319.1 CDS Acife_2919 NC_015942.1 2877867 2878514 D TIGRFAM: ATP phosphoribosyltransferase, catalytic region; HAMAP: ATP phosphoribosyltransferase; KEGG: afr:AFE_3040 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase, catalytic region; ATP phosphoribosyltransferase 2877867..2878514 Acidithiobacillus ferrivorans SS3 11043599 YP_004785320.1 CDS Acife_2920 NC_015942.1 2878511 2879812 D TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; HAMAP: Histidinol dehydrogenase, prokaryotic-type; KEGG: afr:AFE_3041 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type; histidinol dehydrogenase 2878511..2879812 Acidithiobacillus ferrivorans SS3 11043600 YP_004785321.1 CDS Acife_2921 NC_015942.1 2879809 2880888 D TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: afr:AFE_3042 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II; histidinol-phosphate aminotransferase 2879809..2880888 Acidithiobacillus ferrivorans SS3 11044617 YP_004785322.1 CDS Acife_2922 NC_015942.1 2880885 2881484 D KEGG: afr:AFE_3043 imidazoleglycerol-phosphate dehydratase; HAMAP: Imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase; Imidazoleglycerol-phosphate dehydratase 2880885..2881484 Acidithiobacillus ferrivorans SS3 11043601 YP_004785323.1 CDS Acife_2923 NC_015942.1 2881481 2882152 D TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; HAMAP: Imidazole glycerol phosphate synthase, subunit H; KEGG: afr:AFE_3044 imidazole glycerol phosphate synthase subunit HisH; PFAM: Glutamine amidotransferase class-I, C-terminal; Imidazole glycerol phosphate synthase subunit hisH 2881481..2882152 Acidithiobacillus ferrivorans SS3 11044618 YP_004785324.1 CDS Acife_2924 NC_015942.1 2882192 2882920 D TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; HAMAP: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; KEGG: afr:AFE_3045 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: Histidine biosynthesis; 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase 2882192..2882920 Acidithiobacillus ferrivorans SS3 11043602 YP_004785325.1 CDS Acife_2925 NC_015942.1 2882925 2883686 D TIGRFAM: Histidine biosynthesis, HisF; HAMAP: Imidazole glycerol phosphate synthase subunit hisF; KEGG: afr:AFE_3046 imidazole glycerol phosphate synthase subunit HisF; PFAM: Histidine biosynthesis; Imidazole glycerol phosphate synthase subunit hisF 2882925..2883686 Acidithiobacillus ferrivorans SS3 11043603 YP_004785326.1 CDS Acife_2926 NC_015942.1 2883766 2884464 D PFAM: Phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; HAMAP: Histidine biosynthesis bifunctional protein hisIE; KEGG: afr:AFE_3047 phosphoribosyl-AMP pyrophosphatase/phosphoribosyl-ATP cyclohydrolase; histidine biosynthesis bifunctional protein hisIE 2883766..2884464 Acidithiobacillus ferrivorans SS3 11044619 YP_004785327.1 CDS Acife_2927 NC_015942.1 2884539 2884757 D TIGRFAM: Twin-arginine translocation protein TatA/E; HAMAP: Twin-arginine translocation protein TatA/E; KEGG: afr:AFE_3048 twin-arginine translocation protein, TatA/E family; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106; Sec-independent protein translocase protein tatA/E-like protein 2884539..2884757 Acidithiobacillus ferrivorans SS3 11044620 YP_004785328.1 CDS Acife_2928 NC_015942.1 2884764 2885135 D KEGG: afr:AFE_3049 twin-arginine translocation protein TatB; TIGRFAM: Twin-arginine translocation protein TatB; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein, TatB subunit 2884764..2885135 Acidithiobacillus ferrivorans SS3 11043604 YP_004785329.1 CDS Acife_2929 NC_015942.1 2885196 2886032 D KEGG: afr:AFE_3050 sec-independent protein translocase TatC; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase, TatC subunit 2885196..2886032 Acidithiobacillus ferrivorans SS3 11043605 YP_004785330.1 CDS Acife_2930 NC_015942.1 2886210 2887394 D PFAM: Glycosyl transferase, group 1; KEGG: afr:AFE_1357 glycosyl transferase, group 1; group 1 glycosyl transferase 2886210..2887394 Acidithiobacillus ferrivorans SS3 11043606 YP_004785331.1 CDS Acife_2931 NC_015942.1 2887391 2887747 D KEGG: afr:AFE_3291 NAD-dependent epimerase/dehydratase family protein; hypothetical protein 2887391..2887747 Acidithiobacillus ferrivorans SS3 11043607 YP_004785332.1 CDS Acife_2932 NC_015942.1 2888085 2888288 D KEGG: afr:AFE_0590 cold-shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 2888085..2888288 Acidithiobacillus ferrivorans SS3 11044621 YP_004785333.1 CDS Acife_2933 NC_015942.1 2888590 2888850 R manually curated; hypothetical protein complement(2888590..2888850) Acidithiobacillus ferrivorans SS3 11043608 YP_004785334.1 CDS Acife_2934 NC_015942.1 2888912 2891908 D TIGRFAM: Diguanylate cyclase, predicted; PAS; Twin-arginine translocation pathway, signal sequence; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; GAF; PAS fold-4; KEGG: afe:Lferr_2664 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2888912..2891908 Acidithiobacillus ferrivorans SS3 11043609 YP_004785335.1 CDS Acife_2935 NC_015942.1 2891954 2893987 D KEGG: afr:AFE_1753 potassium uptake protein; HAMAP: Low affinity potassium transport system protein kup; PFAM: K+ potassium transporter; Low affinity potassium transport system protein kup 2891954..2893987 Acidithiobacillus ferrivorans SS3 11043610 YP_004785336.1 CDS Acife_2936 NC_015942.1 2894005 2894433 R KEGG: afr:AFE_0096 hypothetical protein; hypothetical protein complement(2894005..2894433) Acidithiobacillus ferrivorans SS3 11044622 YP_004785337.1 CDS Acife_2937 NC_015942.1 2894436 2894855 R KEGG: afr:AFE_2648 hypothetical protein; hypothetical protein complement(2894436..2894855) Acidithiobacillus ferrivorans SS3 11043611 YP_004785338.1 CDS Acife_2938 NC_015942.1 2894940 2895080 D hypothetical protein 2894940..2895080 Acidithiobacillus ferrivorans SS3 11043612 YP_004785339.1 CDS Acife_2939 NC_015942.1 2895119 2896393 R PFAM: Amidohydrolase 1; KEGG: afr:AFE_3058 dihydroorotase, multifunctional complex type; amidohydrolase complement(2895119..2896393) Acidithiobacillus ferrivorans SS3 11043613 YP_004785340.1 CDS Acife_2940 NC_015942.1 2896399 2897382 R TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase; KEGG: afr:AFE_3059 aspartate carbamoyltransferase catalytic subunit; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate carbamoyltransferase complement(2896399..2897382) Acidithiobacillus ferrivorans SS3 11043614 YP_004785341.1 CDS Acife_2941 NC_015942.1 2897379 2897885 R PFAM: Phosphoribosyltransferase; KEGG: afr:AFE_3060 PyrR bifunctional protein; phosphoribosyltransferase complement(2897379..2897885) Acidithiobacillus ferrivorans SS3 11044623 YP_004785342.1 CDS Acife_2942 NC_015942.1 2897882 2898313 R SMART: Resolvase, RNase H-like fold; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: afr:AFE_3061 hypothetical protein; HAMAP: Holliday junction resolvase; PFAM: Resolvase, holliday junction-type, YqgF-like; Holliday junction resolvase complement(2897882..2898313) Acidithiobacillus ferrivorans SS3 11043615 YP_004785343.1 CDS Acife_2943 NC_015942.1 2898306 2898863 R KEGG: afr:AFE_3062 hypothetical protein; HAMAP: Protein of unknown function DUF179; PFAM: Protein of unknown function DUF179; hypothetical protein complement(2898306..2898863) Acidithiobacillus ferrivorans SS3 11043616 YP_004785344.1 CDS Acife_2944 NC_015942.1 2899070 2899990 R KEGG: afr:AFE_1275 hypothetical protein; hypothetical protein complement(2899070..2899990) Acidithiobacillus ferrivorans SS3 11043617 YP_004785345.1 CDS Acife_2945 NC_015942.1 2900005 2900214 R KEGG: afr:AFE_1274 hypothetical protein; hypothetical protein complement(2900005..2900214) Acidithiobacillus ferrivorans SS3 11043618 YP_004785346.1 CDS Acife_2946 NC_015942.1 2900892 2901101 R KEGG: tin:Tint_1902 hypothetical protein; hypothetical protein complement(2900892..2901101) Acidithiobacillus ferrivorans SS3 11043619 YP_004785347.1 CDS Acife_2947 NC_015942.1 2901256 2901447 R KEGG: app:CAP2UW1_4512 hypothetical protein; hypothetical protein complement(2901256..2901447) Acidithiobacillus ferrivorans SS3 11044624 YP_004785348.1 CDS Acife_2948 NC_015942.1 2901444 2902238 R KEGG: app:CAP2UW1_4513 AAA ATPase; AAA ATPase complement(2901444..2902238) Acidithiobacillus ferrivorans SS3 11043620 YP_004785349.1 CDS Acife_2949 NC_015942.1 2902241 2903563 R PFAM: Integrase, catalytic core; KEGG: app:CAP2UW1_4407 integrase catalytic subunit; integrase catalytic subunit complement(2902241..2903563) Acidithiobacillus ferrivorans SS3 11043621 YP_004785350.1 CDS Acife_2950 NC_015942.1 2903693 2904226 R KEGG: app:CAP2UW1_4515 hypothetical protein; hypothetical protein complement(2903693..2904226) Acidithiobacillus ferrivorans SS3 11043622 YP_004785351.1 CDS Acife_2951 NC_015942.1 2904542 2906059 R KEGG: afr:AFE_1292 hypothetical protein; hypothetical protein complement(2904542..2906059) Acidithiobacillus ferrivorans SS3 11043623 YP_004785352.1 CDS Acife_2952 NC_015942.1 2906127 2906309 D hypothetical protein 2906127..2906309 Acidithiobacillus ferrivorans SS3 11043624 YP_004785353.1 CDS Acife_2953 NC_015942.1 2906338 2906781 D KEGG: afr:AFE_1287 hypothetical protein; hypothetical protein 2906338..2906781 Acidithiobacillus ferrivorans SS3 11043625 YP_004785354.1 CDS Acife_2954 NC_015942.1 2906866 2907453 R KEGG: afr:AFE_1325 hypothetical protein; hypothetical protein complement(2906866..2907453) Acidithiobacillus ferrivorans SS3 11043626 YP_004785355.1 CDS Acife_2955 NC_015942.1 2907864 2908832 D KEGG: afr:AFE_1323 hypothetical protein; hypothetical protein 2907864..2908832 Acidithiobacillus ferrivorans SS3 11044625 YP_004785356.1 CDS Acife_2956 NC_015942.1 2908855 2909334 D hypothetical protein 2908855..2909334 Acidithiobacillus ferrivorans SS3 11043627 YP_004785357.1 CDS Acife_2957 NC_015942.1 2909338 2909664 D KEGG: afr:AFE_1321 hypothetical protein; HAMAP: UPF0145 protein ybjQ; PFAM: Uncharacterised protein family UPF0145; hypothetical protein 2909338..2909664 Acidithiobacillus ferrivorans SS3 11043628 YP_004785358.1 CDS Acife_2958 NC_015942.1 2909693 2910370 R KEGG: afr:AFE_1223 hypothetical protein; hypothetical protein complement(2909693..2910370) Acidithiobacillus ferrivorans SS3 11043629 YP_004785359.1 CDS Acife_2959 NC_015942.1 2910391 2910687 R KEGG: geo:Geob_2001 transcriptional modulator of MazE/toxin, MazF; transcriptional modulator of MazE/toxin, MazF complement(2910391..2910687) Acidithiobacillus ferrivorans SS3 11043630 YP_004785360.1 CDS Acife_2960 NC_015942.1 2910681 2910917 R PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: lbl:LBL_2676 proteic killer gene system protein, suppressor of inhibitory function of MazF; SpoVT/AbrB domain-containing protein complement(2910681..2910917) Acidithiobacillus ferrivorans SS3 11044626 YP_004785361.1 CDS Acife_2961 NC_015942.1 2911033 2911458 R hypothetical protein complement(2911033..2911458) Acidithiobacillus ferrivorans SS3 11043631 YP_004785362.1 CDS Acife_2962 NC_015942.1 2911455 2912072 R KEGG: abm:ABSDF1778 hypothetical protein; hypothetical protein complement(2911455..2912072) Acidithiobacillus ferrivorans SS3 11043632 YP_004785363.1 CDS Acife_2963 NC_015942.1 2912111 2912761 R hypothetical protein complement(2912111..2912761) Acidithiobacillus ferrivorans SS3 11043633 YP_004785364.1 CDS Acife_2964 NC_015942.1 2912767 2913222 R PFAM: Protein of unknown function DUF29; KEGG: pay:PAU_03739 hypothetical protein; hypothetical protein complement(2912767..2913222) Acidithiobacillus ferrivorans SS3 11044627 YP_004785365.1 CDS Acife_2965 NC_015942.1 2913236 2913457 R hypothetical protein complement(2913236..2913457) Acidithiobacillus ferrivorans SS3 11043634 YP_004785366.1 CDS Acife_2966 NC_015942.1 2913478 2914128 R hypothetical protein complement(2913478..2914128) Acidithiobacillus ferrivorans SS3 11043635 YP_004785367.1 CDS Acife_2967 NC_015942.1 2914259 2914672 R PFAM: PilT protein, N-terminal; KEGG: afr:AFE_2129 virulence-associated protein, putative; PilT protein domain-containing protein complement(2914259..2914672) Acidithiobacillus ferrivorans SS3 11043636 YP_004785368.1 CDS Acife_2968 NC_015942.1 2914669 2914899 R KEGG: afr:AFE_2130 virulence-associated protein, putative; virulence-associated protein complement(2914669..2914899) Acidithiobacillus ferrivorans SS3 11043637 YP_004785369.1 CDS Acife_2969 NC_015942.1 2915033 2915539 R PFAM: GCN5-related N-acetyltransferase; KEGG: gpb:HDN1F_22990 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(2915033..2915539) Acidithiobacillus ferrivorans SS3 11043638 YP_004785370.1 CDS Acife_2970 NC_015942.1 2915536 2915814 R PFAM: Protein of unknown function DUF1778; KEGG: gpb:HDN1F_23000 hypothetical protein; hypothetical protein complement(2915536..2915814) Acidithiobacillus ferrivorans SS3 11043639 YP_004785371.1 CDS Acife_2971 NC_015942.1 2915918 2919280 R PFAM: TraG-like, N-terminal; KEGG: afr:AFE_1068 pilus assembly protein TraG, putative; TraG domain-containing protein complement(2915918..2919280) Acidithiobacillus ferrivorans SS3 11043640 YP_004785372.1 CDS Acife_2972 NC_015942.1 2919305 2920924 R PFAM: Type IV conjugative transfer system protein TraH; KEGG: afr:AFE_1067 pilus assembly protein TraH, putative; TraH family protein complement(2919305..2920924) Acidithiobacillus ferrivorans SS3 11044628 YP_004785373.1 CDS Acife_2973 NC_015942.1 2920935 2921900 R KEGG: afr:AFE_1066 pilus assembly protein TraF, putative; pilus assembly protein TraF complement(2920935..2921900) Acidithiobacillus ferrivorans SS3 11043641 YP_004785374.1 CDS Acife_2974 NC_015942.1 2921897 2922409 R PFAM: Lytic transglycosylase-like, catalytic; KEGG: afr:AFE_1065 conjugal transfer protein, putative; lytic transglycosylase complement(2921897..2922409) Acidithiobacillus ferrivorans SS3 11044629 YP_004785375.1 CDS Acife_2975 NC_015942.1 2922529 2922651 D hypothetical protein 2922529..2922651 Acidithiobacillus ferrivorans SS3 11043642 YP_004785376.1 CDS Acife_2976 NC_015942.1 2922638 2922904 D hypothetical protein 2922638..2922904 Acidithiobacillus ferrivorans SS3 11043643 YP_004785377.1 CDS Acife_2977 NC_015942.1 2922909 2923046 D hypothetical protein 2922909..2923046 Acidithiobacillus ferrivorans SS3 11044630 YP_004785378.1 CDS Acife_2978 NC_015942.1 2923055 2923228 D hypothetical protein 2923055..2923228 Acidithiobacillus ferrivorans SS3 11043644 YP_004785379.1 CDS Acife_2979 NC_015942.1 2923267 2924187 R KEGG: afr:AFE_1255 hypothetical protein; hypothetical protein complement(2923267..2924187) Acidithiobacillus ferrivorans SS3 11044631 YP_004785380.1 CDS Acife_2980 NC_015942.1 2924187 2926601 R SMART: Metal-dependent phosphohydrolase, HD region; KEGG: afr:AFE_1254 hypothetical protein; metal-dependent phosphohydrolase HD region complement(2924187..2926601) Acidithiobacillus ferrivorans SS3 11043645 YP_004785381.1 CDS Acife_2981 NC_015942.1 2926841 2928178 D PFAM: Transposase, IS4-like; KEGG: npu:Npun_BR216 hypothetical protein; transposase IS4 family protein 2926841..2928178 Acidithiobacillus ferrivorans SS3 11043646 YP_004785382.1 CDS Acife_2982 NC_015942.1 2928182 2929090 D KEGG: dat:HRM2_05840 hypothetical protein; hypothetical protein 2928182..2929090 Acidithiobacillus ferrivorans SS3 11043647 YP_004785383.1 CDS Acife_2983 NC_015942.1 2929138 2929482 R hypothetical protein complement(2929138..2929482) Acidithiobacillus ferrivorans SS3 11043648 YP_004785384.1 CDS Acife_2984 NC_015942.1 2929494 2930273 R manually curated; KEGG: afr:AFE_1253 hypothetical protein; hypothetical protein complement(2929494..2930273) Acidithiobacillus ferrivorans SS3 11044632 YP_004785385.1 CDS Acife_2985 NC_015942.1 2930422 2931837 R KEGG: afr:AFE_1023 HNH endonuclease domain protein; PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease complement(2930422..2931837) Acidithiobacillus ferrivorans SS3 11043649 YP_004785386.1 CDS Acife_2986 NC_015942.1 2932129 2932416 R hypothetical protein complement(2932129..2932416) Acidithiobacillus ferrivorans SS3 11043650 YP_004785387.1 CDS Acife_2987 NC_015942.1 2932409 2934238 R KEGG: afr:AFE_1251 lipoprotein, putative; lipoprotein complement(2932409..2934238) Acidithiobacillus ferrivorans SS3 11043651 YP_004785388.1 CDS Acife_2988 NC_015942.1 2934318 2934728 R KEGG: afr:AFE_2845 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding; single-strand binding protein complement(2934318..2934728) Acidithiobacillus ferrivorans SS3 11043652 YP_004785389.1 CDS Acife_2989 NC_015942.1 2934955 2935905 R KEGG: afr:AFE_1257 hypothetical protein; hypothetical protein complement(2934955..2935905) Acidithiobacillus ferrivorans SS3 11044633 YP_004785390.1 CDS Acife_2990 NC_015942.1 2935899 2937263 R KEGG: afr:AFE_1258 DNA topoisomerase domain protein; PFAM: DNA topoisomerase, type IA, central; SMART: DNA topoisomerase, type IA, domain 2; DNA topoisomerase type IA central domain-containing protein complement(2935899..2937263) Acidithiobacillus ferrivorans SS3 11043653 YP_004785391.1 CDS Acife_2991 NC_015942.1 2937393 2937848 D KEGG: afr:AFE_1288 hypothetical protein; hypothetical protein 2937393..2937848 Acidithiobacillus ferrivorans SS3 11043654 YP_004785392.1 CDS Acife_2992 NC_015942.1 2938021 2938284 D hypothetical protein 2938021..2938284 Acidithiobacillus ferrivorans SS3 11043655 YP_004785393.1 CDS Acife_2993 NC_015942.1 2938423 2939346 D KEGG: afr:AFE_1297 cobalamin biosynthesis protein, CobS family; PFAM: ATPase associated with various cellular activities, AAA-5; SMART: ATPase, AAA+ type, core; ATPase 2938423..2939346 Acidithiobacillus ferrivorans SS3 11043656 YP_004785394.1 CDS Acife_2994 NC_015942.1 2939346 2939441 D hypothetical protein 2939346..2939441 Acidithiobacillus ferrivorans SS3 11043657 YP_004785395.1 CDS Acife_2995 NC_015942.1 2939463 2939825 D hypothetical protein 2939463..2939825 Acidithiobacillus ferrivorans SS3 11043658 YP_004785396.1 CDS Acife_2996 NC_015942.1 2939896 2940216 D hypothetical protein 2939896..2940216 Acidithiobacillus ferrivorans SS3 11044634 YP_004785397.1 CDS Acife_2997 NC_015942.1 2940342 2940791 D hypothetical protein 2940342..2940791 Acidithiobacillus ferrivorans SS3 11043659 YP_004785398.1 CDS Acife_2998 NC_015942.1 2940859 2941419 D PFAM: Peptidase M50; KEGG: afr:AFE_1024 membrane-associated zinc metalloprotease, putative; peptidase M50 2940859..2941419 Acidithiobacillus ferrivorans SS3 11044635 YP_004785399.1 CDS Acife_2999 NC_015942.1 2941548 2941760 D hypothetical protein 2941548..2941760 Acidithiobacillus ferrivorans SS3 11043660 YP_004785400.1 CDS Acife_3000 NC_015942.1 2941802 2942191 D KEGG: afr:AFE_1045 hypothetical protein; hypothetical protein 2941802..2942191 Acidithiobacillus ferrivorans SS3 11043661 YP_004785401.1 CDS Acife_3001 NC_015942.1 2942178 2942306 D hypothetical protein 2942178..2942306 Acidithiobacillus ferrivorans SS3 11044636 YP_004785402.1 CDS Acife_3002 NC_015942.1 2942308 2943117 D KEGG: afr:AFE_1283 hypothetical protein; hypothetical protein 2942308..2943117 Acidithiobacillus ferrivorans SS3 11043662 YP_004785403.1 CDS Acife_3004 NC_015942.1 2944050 2945015 D KEGG: bvi:Bcep1808_6806 5'-3' exonuclease; PFAM: 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 5'-3' exonuclease 2944050..2945015 Acidithiobacillus ferrivorans SS3 11043663 YP_004785404.1 CDS Acife_3005 NC_015942.1 2944999 2945514 D KEGG: afr:AFE_1060 hypothetical protein; hypothetical protein 2944999..2945514 Acidithiobacillus ferrivorans SS3 11043664 YP_004785405.1 CDS Acife_3006 NC_015942.1 2945548 2946207 D PFAM: Fertility inhibition FinO-like; Fertility inhibition FinO-like protein 2945548..2946207 Acidithiobacillus ferrivorans SS3 11043665 YP_004785406.1 CDS Acife_3007 NC_015942.1 2946161 2946511 D KEGG: afr:AFE_1584 DNA-binding protein HU family protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 2946161..2946511 Acidithiobacillus ferrivorans SS3 11043666 YP_004785407.1 CDS Acife_3008 NC_015942.1 2946514 2946795 D KEGG: afr:AFE_1070 DNA-binding protein, HU family; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 2946514..2946795 Acidithiobacillus ferrivorans SS3 11044638 YP_004785408.1 CDS Acife_3009 NC_015942.1 2946860 2947465 R hypothetical protein complement(2946860..2947465) Acidithiobacillus ferrivorans SS3 11043667 YP_004785409.1 CDS Acife_3010 NC_015942.1 2947490 2948383 R PFAM: Integrase, catalytic core, phage; KEGG: afr:AFE_1145 tyrosine recombinase, phage integrase family; integrase family protein complement(2947490..2948383) Acidithiobacillus ferrivorans SS3 11043668 YP_004785410.1 CDS Acife_3011 NC_015942.1 2948580 2948936 D KEGG: afr:AFE_1146 hypothetical protein; hypothetical protein 2948580..2948936 Acidithiobacillus ferrivorans SS3 11043669 YP_004785411.1 CDS Acife_3012 NC_015942.1 2948923 2949468 D KEGG: afr:AFE_1943 DsbG domain protein; hypothetical protein 2948923..2949468 Acidithiobacillus ferrivorans SS3 11043670 YP_004785412.1 CDS Acife_3013 NC_015942.1 2949479 2949988 D hypothetical protein 2949479..2949988 Acidithiobacillus ferrivorans SS3 11043671 YP_004785413.1 CDS Acife_3014 NC_015942.1 2950554 2951984 D PFAM: UbiA prenyltransferase; KEGG: nde:NIDE3581 putative UbiA family prenyltransferase; UbiA prenyltransferase 2950554..2951984 Acidithiobacillus ferrivorans SS3 11043672 YP_004785414.1 CDS Acife_3015 NC_015942.1 2951981 2953288 D PFAM: FAD linked oxidase, N-terminal; KEGG: gpb:HDN1F_16410 oxidoreductase; FAD linked oxidase domain-containing protein 2951981..2953288 Acidithiobacillus ferrivorans SS3 11043673 YP_004785415.1 CDS Acife_3016 NC_015942.1 2953291 2954028 D PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA2567 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2953291..2954028 Acidithiobacillus ferrivorans SS3 11044639 YP_004785416.1 CDS Acife_3017 NC_015942.1 2954058 2956277 D KEGG: hypothetical protein; hypothetical protein 2954058..2956277 Acidithiobacillus ferrivorans SS3 11043674 YP_004785417.1 CDS Acife_3018 NC_015942.1 2956343 2957296 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: aav:Aave_0060 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2956343..2957296 Acidithiobacillus ferrivorans SS3 11044640 YP_004785418.1 CDS Acife_3019 NC_015942.1 2957304 2958590 D PFAM: Amine oxidase; KEGG: meh:M301_1240 amine oxidase; amine oxidase 2957304..2958590 Acidithiobacillus ferrivorans SS3 11043675 YP_004785419.1 CDS Acife_3020 NC_015942.1 2958601 2959017 D KEGG: hha:Hhal_1553 hypothetical protein; hypothetical protein 2958601..2959017 Acidithiobacillus ferrivorans SS3 11043676 YP_004785420.1 CDS Acife_3021 NC_015942.1 2959014 2959124 D hypothetical protein 2959014..2959124 Acidithiobacillus ferrivorans SS3 11044641 YP_004785421.1 CDS Acife_3022 NC_015942.1 2959100 2959369 R hypothetical protein complement(2959100..2959369) Acidithiobacillus ferrivorans SS3 11043677 YP_004785422.1 CDS Acife_3023 NC_015942.1 2959419 2960081 R PFAM: NERD; KEGG: afr:AFE_1109 hypothetical protein; NERD domain-containing protein complement(2959419..2960081) Acidithiobacillus ferrivorans SS3 11044642 YP_004785423.1 CDS Acife_3024 NC_015942.1 2960078 2960860 R hypothetical protein complement(2960078..2960860) Acidithiobacillus ferrivorans SS3 11043678 YP_004785424.1 CDS Acife_3025 NC_015942.1 2960857 2961150 R hypothetical protein complement(2960857..2961150) Acidithiobacillus ferrivorans SS3 11043679 YP_004785425.1 CDS Acife_3026 NC_015942.1 2961193 2961402 R hypothetical protein complement(2961193..2961402) Acidithiobacillus ferrivorans SS3 11043680 YP_004785426.1 CDS Acife_3027 NC_015942.1 2961423 2961767 R KEGG: afr:AFE_1108 hypothetical protein; hypothetical protein complement(2961423..2961767) Acidithiobacillus ferrivorans SS3 11043681 YP_004785427.1 CDS Acife_3028 NC_015942.1 2961764 2962297 R KEGG: afr:AFE_1107 hypothetical protein; hypothetical protein complement(2961764..2962297) Acidithiobacillus ferrivorans SS3 11043682 YP_004785428.1 CDS Acife_3029 NC_015942.1 2962294 2962806 R KEGG: afr:AFE_1020 hypothetical protein; hypothetical protein complement(2962294..2962806) Acidithiobacillus ferrivorans SS3 11043683 YP_004785429.1 CDS Acife_3030 NC_015942.1 2962796 2963353 R KEGG: xfn:XfasM23_2243 hypothetical protein; hypothetical protein complement(2962796..2963353) Acidithiobacillus ferrivorans SS3 11043684 YP_004785430.1 CDS Acife_3031 NC_015942.1 2963353 2964603 R KEGG: afr:AFE_1104 conserved domain protein, putative; conserved domain-containing protein complement(2963353..2964603) Acidithiobacillus ferrivorans SS3 11044643 YP_004785431.1 CDS Acife_3032 NC_015942.1 2964603 2965610 R KEGG: afr:AFE_1103 hypothetical protein; hypothetical protein complement(2964603..2965610) Acidithiobacillus ferrivorans SS3 11043685 YP_004785432.1 CDS Acife_3033 NC_015942.1 2965621 2966679 R KEGG: afr:AFE_1100 hypothetical protein; hypothetical protein complement(2965621..2966679) Acidithiobacillus ferrivorans SS3 11043686 YP_004785433.1 CDS Acife_3034 NC_015942.1 2966716 2967057 R PFAM: PemK-like protein; KEGG: afr:AFE_1099 ChpA protein; transcriptional modulator of MazE/toxin, MazF complement(2966716..2967057) Acidithiobacillus ferrivorans SS3 11043687 YP_004785434.1 CDS Acife_3035 NC_015942.1 2967057 2967296 R PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: afr:AFE_1098 PemI family protein; transcriptional regulator/antitoxin, MazE complement(2967057..2967296) Acidithiobacillus ferrivorans SS3 11043688 YP_004785435.1 CDS Acife_3036 NC_015942.1 2967379 2970438 R KEGG: afr:AFE_1097 conjugal transfer protein TraN, putative; conjugal transfer protein TraN complement(2967379..2970438) Acidithiobacillus ferrivorans SS3 11043689 YP_004785436.1 CDS Acife_3037 NC_015942.1 2970442 2971701 R PFAM: TraU; KEGG: afr:AFE_1096 conjugal transfer protein TraU, putative; TraU family protein complement(2970442..2971701) Acidithiobacillus ferrivorans SS3 11044644 YP_004785437.1 CDS Acife_3038 NC_015942.1 2971703 2972968 R PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; KEGG: afr:AFE_1095 pilus assembly protein TraW, putative; type-F conjugative transfer system pilin assembly protein TrbC complement(2971703..2972968) Acidithiobacillus ferrivorans SS3 11043690 YP_004785438.1 CDS Acife_3039 NC_015942.1 2972965 2973765 R KEGG: afr:AFE_1094 hypothetical protein; hypothetical protein complement(2972965..2973765) Acidithiobacillus ferrivorans SS3 11044645 YP_004785439.1 CDS Acife_3040 NC_015942.1 2973779 2974840 R manually curated; KEGG: afr:AFE_1093 hypothetical protein; hypothetical protein complement(2973779..2974840) Acidithiobacillus ferrivorans SS3 11043691 YP_004785440.1 CDS Acife_3041 NC_015942.1 2974854 2975378 R PFAM: Peptidase S26, conserved region; KEGG: afr:AFE_1091 conjugation signal peptidase TraF, putative; peptidase S26 complement(2974854..2975378) Acidithiobacillus ferrivorans SS3 11043692 YP_004785441.1 CDS Acife_3042 NC_015942.1 2975371 2975901 R KEGG: afr:AFE_1090 hypothetical protein; hypothetical protein complement(2975371..2975901) Acidithiobacillus ferrivorans SS3 11044646 YP_004785442.1 CDS Acife_3043 NC_015942.1 2975898 2978492 R TIGRFAM: Type-IV secretion system protein TraC; KEGG: afr:AFE_1089 type-IV secretion system protein TraC; type-IV secretion system protein TraC complement(2975898..2978492) Acidithiobacillus ferrivorans SS3 11043693 YP_004785443.1 CDS Acife_3044 NC_015942.1 2978489 2979175 R KEGG: afr:AFE_1088 thiol:disulfide interchange protein, DsbA family; DsbA family thiol:disulfide interchange protein complement(2978489..2979175) Acidithiobacillus ferrivorans SS3 11044647 YP_004785444.1 CDS Acife_3045 NC_015942.1 2979172 2980374 R PFAM: Type II secretion system protein E; KEGG: afr:AFE_1087 type II/IV secretion system protein; type II secretion system protein E complement(2979172..2980374) Acidithiobacillus ferrivorans SS3 11043694 YP_004785445.1 CDS Acife_3046 NC_015942.1 2980374 2981201 R KEGG: afr:AFE_1085 thiol:disulfide interchange domain protein; thiol:disulfide interchange domain-containing protein complement(2980374..2981201) Acidithiobacillus ferrivorans SS3 11043695 YP_004785446.1 CDS Acife_3047 NC_015942.1 2981201 2981605 R KEGG: afr:AFE_1084 conjugal transfer protein TraA, putative; conjugal transfer protein TraA complement(2981201..2981605) Acidithiobacillus ferrivorans SS3 11043696 YP_004785447.1 CDS Acife_3048 NC_015942.1 2981649 2982179 R KEGG: afr:AFE_1082 conjugal transfer protein TraV, putative; TIGRFAM: Type IV secretion system, TraV; PFAM: Type IV secretion system, TraV; type IV conjugative transfer system protein TraV complement(2981649..2982179) Acidithiobacillus ferrivorans SS3 11043697 YP_004785448.1 CDS Acife_3049 NC_015942.1 2982176 2983735 R KEGG: afr:AFE_1081 conjugal transfer protein, putative; conjugal transfer protein complement(2982176..2983735) Acidithiobacillus ferrivorans SS3 11044648 YP_004785449.1 CDS Acife_3050 NC_015942.1 2983729 2984895 R KEGG: afr:AFE_1080 TraK lipoprotein, putative; TraK lipoprotein complement(2983729..2984895) Acidithiobacillus ferrivorans SS3 11043698 YP_004785450.1 CDS Acife_3051 NC_015942.1 2984892 2985500 R TIGRFAM: TraE; KEGG: afr:AFE_1079 type IV conjugative transfer system protein TraE; type IV conjugative transfer system protein TraE complement(2984892..2985500) Acidithiobacillus ferrivorans SS3 11043699 YP_004785451.1 CDS Acife_3052 NC_015942.1 2985497 2985775 R TIGRFAM: Type IV conjugative transfer system protein TraL; KEGG: afr:AFE_1078 type IV conjugative transfer system protein TraL; type IV conjugative transfer system protein TraL complement(2985497..2985775) Acidithiobacillus ferrivorans SS3 11043700 YP_004785452.1 CDS Acife_3053 NC_015942.1 2985763 2986530 R KEGG: afr:AFE_1077 hypothetical protein; hypothetical protein complement(2985763..2986530) Acidithiobacillus ferrivorans SS3 11043701 YP_004785453.1 CDS Acife_3054 NC_015942.1 2986592 2987962 R KEGG: afr:AFE_1023 HNH endonuclease domain protein; PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease complement(2986592..2987962) Acidithiobacillus ferrivorans SS3 11043702 YP_004785454.1 CDS Acife_3055 NC_015942.1 2988249 2988557 R KEGG: afr:AFE_1076 hypothetical protein; hypothetical protein complement(2988249..2988557) Acidithiobacillus ferrivorans SS3 11043703 YP_004785455.1 CDS Acife_3056 NC_015942.1 2988560 2989708 R KEGG: afr:AFE_1075 hypothetical protein; hypothetical protein complement(2988560..2989708) Acidithiobacillus ferrivorans SS3 11044649 YP_004785456.1 CDS Acife_3057 NC_015942.1 2989701 2989952 R KEGG: afr:AFE_1074 hypothetical protein; hypothetical protein complement(2989701..2989952) Acidithiobacillus ferrivorans SS3 11043704 YP_004785457.1 CDS Acife_3058 NC_015942.1 2989942 2990292 R hypothetical protein complement(2989942..2990292) Acidithiobacillus ferrivorans SS3 11043705 YP_004785458.1 CDS Acife_3059 NC_015942.1 2990351 2991376 R KEGG: afr:AFE_1249 hypothetical protein; hypothetical protein complement(2990351..2991376) Acidithiobacillus ferrivorans SS3 11043706 YP_004785459.1 CDS Acife_3060 NC_015942.1 2991546 2992394 D KEGG: afr:AFE_1064 hypothetical protein; hypothetical protein 2991546..2992394 Acidithiobacillus ferrivorans SS3 11043707 YP_004785460.1 CDS Acife_3061 NC_015942.1 2992657 2994327 D PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: adn:Alide_0478 cmp/dcmp deaminase zinc-binding protein; zinc-binding CMP/dCMP deaminase 2992657..2994327 Acidithiobacillus ferrivorans SS3 11043708 YP_004785461.1 CDS Acife_3062 NC_015942.1 2994299 2994496 D hypothetical protein 2994299..2994496 Acidithiobacillus ferrivorans SS3 11043709 YP_004785462.1 CDS Acife_3064 NC_015942.1 2995063 2995686 R manually curated; KEGG: afr:AFE_1256 hypothetical protein; hypothetical protein complement(2995063..2995686) Acidithiobacillus ferrivorans SS3 11043711 YP_004785463.1 CDS Acife_3065 NC_015942.1 2996012 2996389 R hypothetical protein complement(2996012..2996389) Acidithiobacillus ferrivorans SS3 11043712 YP_004785464.1 CDS Acife_3066 NC_015942.1 2996386 2996649 R KEGG: afr:AFE_1021 hypothetical protein; hypothetical protein complement(2996386..2996649) Acidithiobacillus ferrivorans SS3 11043713 YP_004785465.1 CDS Acife_3067 NC_015942.1 2996731 2998860 R TIGRFAM: DNA topoisomerase I, bacterial-type; PFAM: DNA topoisomerase, type IA, central; Toprim domain; KEGG: afr:AFE_1013 DNA topoisomerase I, putative; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; DNA topoisomerase I complement(2996731..2998860) Acidithiobacillus ferrivorans SS3 11043714 YP_004785466.1 CDS Acife_3068 NC_015942.1 2998938 2999267 R KEGG: afr:AFE_1243 hypothetical protein; hypothetical protein complement(2998938..2999267) Acidithiobacillus ferrivorans SS3 11043715 YP_004785467.1 CDS Acife_3069 NC_015942.1 2999309 2999674 R hypothetical protein complement(2999309..2999674) Acidithiobacillus ferrivorans SS3 11044650 YP_004785468.1 CDS Acife_3070 NC_015942.1 2999646 3000911 R PFAM: LexA DNA-binding region; KEGG: bvi:Bcep1808_7375 hypothetical protein; LexA DNA-binding domain-containing protein complement(2999646..3000911) Acidithiobacillus ferrivorans SS3 11043716 YP_004785469.1 CDS Acife_3071 NC_015942.1 3001162 3001383 R hypothetical protein complement(3001162..3001383) Acidithiobacillus ferrivorans SS3 11043717 YP_004785470.1 CDS Acife_3072 NC_015942.1 3001383 3001628 R hypothetical protein complement(3001383..3001628) Acidithiobacillus ferrivorans SS3 11043718 YP_004785471.1 CDS Acife_3073 NC_015942.1 3001742 3002143 D KEGG: cko:CKO_01905 hypothetical protein; hypothetical protein 3001742..3002143 Acidithiobacillus ferrivorans SS3 11044651 YP_004785472.1 CDS Acife_3074 NC_015942.1 3002386 3002655 D PFAM: Prophage CP4-57 regulatory; KEGG: pst:PSPTO_3429 DNA-binding protein; phage transcriptional regulator AlpA 3002386..3002655 Acidithiobacillus ferrivorans SS3 11043719 YP_004785473.1 CDS Acife_3075 NC_015942.1 3002662 3003843 R PFAM: Integrase, catalytic core, phage; KEGG: ddc:Dd586_3778 integrase family protein; integrase family protein complement(3002662..3003843) Acidithiobacillus ferrivorans SS3 11044652 YP_004785474.1 CDS Acife_3076 NC_015942.1 3004093 3005031 R TIGRFAM: Glutathione synthetase, prokaryotic; HAMAP: Glutathione synthetase, prokaryotic; KEGG: afr:AFE_3063 glutathione synthetase; PFAM: Prokaryotic glutathione synthetase, ATP-binding; Prokaryotic glutathione synthetase, N-terminal; glutathione synthetase complement(3004093..3005031) Acidithiobacillus ferrivorans SS3 11043720 YP_004785475.1 CDS Acife_3077 NC_015942.1 3005028 3006338 R KEGG: afr:AFE_3064 glutamate--cysteine ligase; TIGRFAM: Glutamate--cysteine ligase GshA; PFAM: Glutamate--cysteine ligase GshA; glutamate/cysteine ligase complement(3005028..3006338) Acidithiobacillus ferrivorans SS3 11043721 YP_004785476.1 CDS Acife_3078 NC_015942.1 3006349 3007509 R KEGG: afr:AFE_3065 citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase type I; PFAM: Citrate synthase-like; 2-methylcitrate synthase/citrate synthase II complement(3006349..3007509) Acidithiobacillus ferrivorans SS3 11044653 YP_004785477.1 CDS Acife_3079 NC_015942.1 3007654 3008028 R TIGRFAM: FeS cluster insertion; HAMAP: Iron--sulfur cluster insertion protein erpA; KEGG: afr:AFE_3067 iron-sulfur cluster assembly accessory protein; PFAM: FeS cluster biogenesis; iron--sulfur cluster insertion protein erpA complement(3007654..3008028) Acidithiobacillus ferrivorans SS3 11043722 YP_004785478.1 CDS Acife_3080 NC_015942.1 3008179 3011124 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 2-oxoacid dehydrogenase acyltransferase, catalytic domain; E3 binding; Biotin/lipoyl attachment; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: afr:AFE_3068 pyruvate dehydrogenase complex, E2 and E3 components; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(3008179..3011124) Acidithiobacillus ferrivorans SS3 11044654 YP_004785479.1 CDS Acife_3081 NC_015942.1 3011225 3012205 R PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: afr:AFE_3069 pyruvate dehydrogenase, E1 component, pyruvate dehydrogenase beta subunit; transketolase central region complement(3011225..3012205) Acidithiobacillus ferrivorans SS3 11043723 YP_004785480.1 CDS Acife_3082 NC_015942.1 3012193 3013179 R KEGG: afr:AFE_3070 pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit; TIGRFAM: Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y; PFAM: Dehydrogenase, E1 component; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha complement(3012193..3013179) Acidithiobacillus ferrivorans SS3 11043724 YP_004785481.1 CDS Acife_3083 NC_015942.1 3013664 3014842 R KEGG: afe:Lferr_1890 hypothetical protein; hypothetical protein complement(3013664..3014842) Acidithiobacillus ferrivorans SS3 11043725 YP_004785482.1 CDS Acife_3084 NC_015942.1 3015102 3015428 R KEGG: afr:AFE_3072 hypothetical protein; hypothetical protein complement(3015102..3015428) Acidithiobacillus ferrivorans SS3 11043726 YP_004785483.1 CDS Acife_3085 NC_015942.1 3015681 3016715 R TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: afr:AFE_3073 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation region; N-acetyl-gamma-glutamyl-phosphate reductase complement(3015681..3016715) Acidithiobacillus ferrivorans SS3 11044655 YP_004785484.1 CDS Acife_3086 NC_015942.1 3016795 3017181 R PFAM: Ribosomal protein S9; KEGG: afr:AFE_3074 ribosomal protein S9; 30S ribosomal protein S9 complement(3016795..3017181) Acidithiobacillus ferrivorans SS3 11043727 YP_004785485.1 CDS Acife_3087 NC_015942.1 3017194 3017622 R KEGG: afr:AFE_3075 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13; 50S ribosomal protein L13 complement(3017194..3017622) Acidithiobacillus ferrivorans SS3 11044656 YP_004785486.1 CDS Acife_3088 NC_015942.1 3017665 3017865 R KEGG: mca:MCA2653 hypothetical protein; hypothetical protein complement(3017665..3017865) Acidithiobacillus ferrivorans SS3 11043728 YP_004785487.1 CDS Acife_3089 NC_015942.1 3017962 3018174 R KEGG: afr:AFE_3078 hypothetical protein; hypothetical protein complement(3017962..3018174) Acidithiobacillus ferrivorans SS3 11043729 YP_004785488.1 CDS Acife_3090 NC_015942.1 3018261 3018860 R PFAM: Nitroreductase-like; KEGG: afr:AFE_3079 nitroreductase family protein; nitroreductase complement(3018261..3018860) Acidithiobacillus ferrivorans SS3 11044657 YP_004785489.1 CDS Acife_3091 NC_015942.1 3019168 3020334 D KEGG: smt:Smal_1621 hypothetical protein; TIGRFAM: HI0933-like protein; PFAM: HI0933-like protein; hypothetical protein 3019168..3020334 Acidithiobacillus ferrivorans SS3 11043730 YP_004785490.1 CDS Acife_3092 NC_015942.1 3025763 3026983 R SMART: RNA-binding S4; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; KEGG: afr:AFE_3085 tyrosyl-tRNA synthetase; HAMAP: Tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; Tyrosyl-tRNA synthetase complement(3025763..3026983) Acidithiobacillus ferrivorans SS3 11044659 YP_004785491.1 CDS Acife_3093 NC_015942.1 3027090 3029381 R KEGG: afr:AFE_3086 plasma-membrane proton-efflux P-type ATPase, putative; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; P-type HAD superfamily ATPase complement(3027090..3029381) Acidithiobacillus ferrivorans SS3 11043735 YP_004785492.1 CDS Acife_3094 NC_015942.1 3029506 3029625 D hypothetical protein 3029506..3029625 Acidithiobacillus ferrivorans SS3 11043736 YP_004785493.1 CDS Acife_3095 NC_015942.1 3029622 3030005 D TIGRFAM: Aspartate decarboxylase; HAMAP: Aspartate decarboxylase; KEGG: afr:AFE_3089 aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase; aspartate 1-decarboxylase 3029622..3030005 Acidithiobacillus ferrivorans SS3 11043737 YP_004785494.1 CDS Acife_3096 NC_015942.1 3030018 3031241 D PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_3090 hypothetical protein; major facilitator superfamily protein 3030018..3031241 Acidithiobacillus ferrivorans SS3 11043738 YP_004785495.1 CDS Acife_3097 NC_015942.1 3031396 3032082 D TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: afr:AFE_3092 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related; GTP-binding protein engB 3031396..3032082 Acidithiobacillus ferrivorans SS3 11043739 YP_004785496.1 CDS Acife_3098 NC_015942.1 3032148 3033410 D PFAM: Ion transport 2; Regulator of K+ conductance, N-terminal; KEGG: afr:AFE_3093 voltage-gated potassium channel; Ion transport 2 domain-containing protein 3032148..3033410 Acidithiobacillus ferrivorans SS3 11043740 YP_004785497.1 CDS Acife_3099 NC_015942.1 3033413 3036112 R TIGRFAM: DNA polymerase 1; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; KEGG: afr:AFE_3094 DNA polymerase I; SMART: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; DNA polymerase I complement(3033413..3036112) Acidithiobacillus ferrivorans SS3 11044660 YP_004785498.1 CDS Acife_3100 NC_015942.1 3036182 3036901 D KEGG: afr:AFE_3095 conserved hypothetical protein TIGR00730; TIGRFAM: Conserved hypothetical protein CHP00730; PFAM: Conserved hypothetical protein CHP00730; hypothetical protein 3036182..3036901 Acidithiobacillus ferrivorans SS3 11043741 YP_004785499.1 CDS Acife_3101 NC_015942.1 3036922 3037257 D KEGG: afr:AFE_3096 hypothetical protein; hypothetical protein 3036922..3037257 Acidithiobacillus ferrivorans SS3 11043742 YP_004785500.1 CDS Acife_3102 NC_015942.1 3037271 3038203 D TIGRFAM: Homoserine kinase ThrB; HAMAP: Homoserine kinase; KEGG: afr:AFE_3097 homoserine kinase; PFAM: Aminoglycoside phosphotransferase; homoserine kinase 3037271..3038203 Acidithiobacillus ferrivorans SS3 11043743 YP_004785501.1 CDS Acife_3103 NC_015942.1 3038383 3038790 R KEGG: afr:AFE_3100 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: Competence protein ComEA, helix-hairpin-helix region; PFAM: Helix-hairpin-helix motif; competence protein ComEA helix-hairpin-helix repeat-containing protein complement(3038383..3038790) Acidithiobacillus ferrivorans SS3 11043744 YP_004785502.1 CDS Acife_3104 NC_015942.1 3038808 3040937 R PFAM: DNA helicase, UvrD/REP type; KEGG: afr:AFE_3101 DNA helicase II; UvrD/REP helicase complement(3038808..3040937) Acidithiobacillus ferrivorans SS3 11044661 YP_004785503.1 CDS Acife_3105 NC_015942.1 3041053 3041991 D KEGG: afr:AFE_3102 curved DNA-binding protein; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; chaperone DnaJ domain-containing protein 3041053..3041991 Acidithiobacillus ferrivorans SS3 11043745 YP_004785504.1 CDS Acife_3106 NC_015942.1 3042015 3042311 D KEGG: afe:Lferr_2701 MerR family transcriptional regulator; MerR family transcriptional regulator 3042015..3042311 Acidithiobacillus ferrivorans SS3 11043746 YP_004785505.1 CDS Acife_3108 NC_015942.1 3042536 3044266 D KEGG: afr:AFE_3104 DNA polymerase X family protein; PFAM: PHP, C-terminal; Nucleotidyltransferase; SMART: DNA-directed DNA polymerase, family X; Helix-hairpin-helix DNA-binding motif, class 1; Polymerase/histidinol phosphatase, N-terminal; PHP domain-containing protein 3042536..3044266 Acidithiobacillus ferrivorans SS3 11043748 YP_004785506.1 CDS Acife_3109 NC_015942.1 3044326 3045192 R PFAM: Alpha/beta hydrolase fold-1; KEGG: afr:AFE_2217 hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold domain-containing protein complement(3044326..3045192) Acidithiobacillus ferrivorans SS3 11043749 YP_004785507.1 CDS Acife_3110 NC_015942.1 3045244 3045345 R hypothetical protein complement(3045244..3045345) Acidithiobacillus ferrivorans SS3 11043750 YP_004785508.1 CDS Acife_3111 NC_015942.1 3045342 3046001 R PFAM: Negative transcriptional regulator; KEGG: afr:AFE_2006 transcriptional regulator, putative; FMN-binding negative transcriptional regulator complement(3045342..3046001) Acidithiobacillus ferrivorans SS3 11044662 YP_004785509.1 CDS Acife_3112 NC_015942.1 3045988 3046659 R PFAM: Transglutaminase-like; KEGG: afr:AFE_2007 hypothetical protein; transglutaminase domain-containing protein complement(3045988..3046659) Acidithiobacillus ferrivorans SS3 11043751 YP_004785510.1 CDS Acife_3113 NC_015942.1 3046686 3047156 R PFAM: Polyketide cyclase/dehydrase; KEGG: afr:AFE_2804 hypothetical protein; polyketide cyclase/dehydrase complement(3046686..3047156) Acidithiobacillus ferrivorans SS3 11043752 YP_004785511.1 CDS Acife_3114 NC_015942.1 3047156 3047701 R PFAM: NADPH-dependent FMN reductase; KEGG: afr:AFE_2803 FMN reductase, NADPH-dependent; NADPH-dependent FMN reductase complement(3047156..3047701) Acidithiobacillus ferrivorans SS3 11044663 YP_004785512.1 CDS Acife_3115 NC_015942.1 3047787 3048269 R PFAM: GCN5-related N-acetyltransferase; KEGG: hna:Hneap_1663 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(3047787..3048269) Acidithiobacillus ferrivorans SS3 11043753 YP_004785513.1 CDS Acife_3116 NC_015942.1 3048354 3048683 R PFAM: Small multidrug resistance protein; KEGG: afr:AFE_2802 multidrug resistance protein, SMR family; small multidrug resistance protein complement(3048354..3048683) Acidithiobacillus ferrivorans SS3 11043754 YP_004785514.1 CDS Acife_3118 NC_015942.1 3049285 3049713 R KEGG: mci:Mesci_1735 hypothetical protein; HAMAP: UPF0310 protein; PFAM: Uncharacterised protein family UPF0310; hypothetical protein complement(3049285..3049713) Acidithiobacillus ferrivorans SS3 11043756 YP_004785515.1 CDS Acife_3119 NC_015942.1 3049710 3050081 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: afe:Lferr_1669 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase complement(3049710..3050081) Acidithiobacillus ferrivorans SS3 11044664 YP_004785516.1 CDS Acife_3120 NC_015942.1 3050182 3050871 R KEGG: rah:Rahaq_4788 transcriptional regulator; transcriptional regulator complement(3050182..3050871) Acidithiobacillus ferrivorans SS3 11044665 YP_004785517.1 CDS Acife_3121 NC_015942.1 3050933 3051046 R hypothetical protein complement(3050933..3051046) Acidithiobacillus ferrivorans SS3 11043757 YP_004785518.1 CDS Acife_3122 NC_015942.1 3051250 3051510 D PFAM: Protein of unknown function DUF1778; KEGG: app:CAP2UW1_4576 hypothetical protein; hypothetical protein 3051250..3051510 Acidithiobacillus ferrivorans SS3 11043758 YP_004785519.1 CDS Acife_3123 NC_015942.1 3051511 3052008 D PFAM: GCN5-related N-acetyltransferase; KEGG: cyj:Cyan7822_5076 GCN5-like N-acetyltransferase; GCN5-like N-acetyltransferase 3051511..3052008 Acidithiobacillus ferrivorans SS3 11044666 YP_004785520.1 CDS Acife_3124 NC_015942.1 3052005 3052388 D KEGG: cch:Cag_1796 ankyrin; ankyrin 3052005..3052388 Acidithiobacillus ferrivorans SS3 11044667 YP_004785521.1 CDS Acife_3125 NC_015942.1 3052410 3052736 R KEGG: tbd:Tbd_2652 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(3052410..3052736) Acidithiobacillus ferrivorans SS3 11043759 YP_004785522.1 CDS Acife_3126 NC_015942.1 3052733 3055897 R KEGG: nha:Nham_4323 hypothetical protein; HAMAP: UPF0753 protein; PFAM: Protein of unknown function DUF2309; hypothetical protein complement(3052733..3055897) Acidithiobacillus ferrivorans SS3 11043760 YP_004785523.1 CDS Acife_3127 NC_015942.1 3055870 3056643 R KEGG: tbd:Tbd_2654 hypothetical protein; hypothetical protein complement(3055870..3056643) Acidithiobacillus ferrivorans SS3 11043761 YP_004785524.1 CDS Acife_3128 NC_015942.1 3056645 3058333 R PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; KEGG: tbd:Tbd_2655 NADH dehydrogenase; NADH/Ubiquinone/plastoquinone (complex I) complement(3056645..3058333) Acidithiobacillus ferrivorans SS3 11043762 YP_004785525.1 CDS Acife_3131 NC_015942.1 3059032 3060213 R PFAM: Ketose-bisphosphate aldolase, class-II; Stress responsive alpha-beta barrel; KEGG: afe:Lferr_1374 ketose-bisphosphate aldolase class-II; ketose-bisphosphate aldolase class-II complement(3059032..3060213) Acidithiobacillus ferrivorans SS3 11043764 YP_004785526.1 CDS Acife_3132 NC_015942.1 3060339 3062690 R KEGG: afr:AFE_1677 von Willebrand factor type A domain protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; von Willebrand factor type A complement(3060339..3062690) Acidithiobacillus ferrivorans SS3 11043765 YP_004785527.1 CDS Acife_3133 NC_015942.1 3062706 3063509 R KEGG: afr:AFE_1678 p30 protein; p30 protein complement(3062706..3063509) Acidithiobacillus ferrivorans SS3 11043766 YP_004785528.1 CDS Acife_3134 NC_015942.1 3063540 3063794 R KEGG: afr:AFE_1679 hypothetical protein; hypothetical protein complement(3063540..3063794) Acidithiobacillus ferrivorans SS3 11044669 YP_004785529.1 CDS Acife_3135 NC_015942.1 3063785 3064420 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: afe:Lferr_1378 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase complement(3063785..3064420) Acidithiobacillus ferrivorans SS3 11043767 YP_004785530.1 CDS Acife_3136 NC_015942.1 3064457 3064735 R KEGG: afr:AFE_1681 hypothetical protein; hypothetical protein complement(3064457..3064735) Acidithiobacillus ferrivorans SS3 11043768 YP_004785531.1 CDS Acife_3137 NC_015942.1 3064732 3065175 R PFAM: Ferritin/Dps protein; KEGG: afr:AFE_1682 bacterioferritin; ferritin Dps family protein complement(3064732..3065175) Acidithiobacillus ferrivorans SS3 11043769 YP_004785532.1 CDS Acife_3138 NC_015942.1 3065189 3065527 R PFAM: Microcompartment protein, bacteria; KEGG: afe:Lferr_1381 microcompartments protein; microcompartments protein complement(3065189..3065527) Acidithiobacillus ferrivorans SS3 11043770 YP_004785533.1 CDS Acife_3139 NC_015942.1 3065573 3065869 R PFAM: Microcompartment protein, bacteria; KEGG: afr:AFE_1684 carboxysome shell peptide; microcompartments protein complement(3065573..3065869) Acidithiobacillus ferrivorans SS3 11043771 YP_004785534.1 CDS Acife_3140 NC_015942.1 3065900 3066166 R KEGG: afr:AFE_1686 carboxysome peptide B; TIGRFAM: Carboxysome peptide B; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; carboxysome peptide B complement(3065900..3066166) Acidithiobacillus ferrivorans SS3 11043772 YP_004785535.1 CDS Acife_3141 NC_015942.1 3066177 3066425 R KEGG: afr:AFE_1687 carboxysome peptide A; TIGRFAM: Carboxysome peptide A; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; carboxysome peptide A complement(3066177..3066425) Acidithiobacillus ferrivorans SS3 11043773 YP_004785536.1 CDS Acife_3142 NC_015942.1 3066422 3068032 R KEGG: afr:AFE_1688 carboxysome shell carbonic anhydrase; TIGRFAM: Carboxysome shell carbonic anhydrase; PFAM: Carboxysome shell carbonic anhydrase; carboxysome shell carbonic anhydrase complement(3066422..3068032) Acidithiobacillus ferrivorans SS3 11044670 YP_004785537.1 CDS Acife_3143 NC_015942.1 3068088 3070388 R KEGG: afe:Lferr_1387 carboxysome structural protein CsoS2; carboxysome structural protein CsoS2 complement(3068088..3070388) Acidithiobacillus ferrivorans SS3 11043774 YP_004785538.1 CDS Acife_3144 NC_015942.1 3070459 3070791 R PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: afr:AFE_1690 ribulose bisphosphate carboxylase, small subunit; ribulose bisphosphate carboxylase small chain complement(3070459..3070791) Acidithiobacillus ferrivorans SS3 11043775 YP_004785539.1 CDS Acife_3145 NC_015942.1 3070883 3072304 R KEGG: afr:AFE_1691 ribulose bisophosphate carboxylase; HAMAP: Ribulose bisphosphate carboxylase large chain; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal; ribulose bisphosphate carboxylase large chain complement(3070883..3072304) Acidithiobacillus ferrivorans SS3 11043776 YP_004785540.1 CDS Acife_3146 NC_015942.1 3072383 3073366 D PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_1692 rubisco operon transcriptional regulator; LysR family transcriptional regulator 3072383..3073366 Acidithiobacillus ferrivorans SS3 11043777 YP_004785541.1 CDS Acife_3147 NC_015942.1 3074152 3074364 R KEGG: afr:AFE_0812 hypothetical protein; hypothetical protein complement(3074152..3074364) Acidithiobacillus ferrivorans SS3 11043778 YP_004785542.1 CDS Acife_3148 NC_015942.1 3074453 3075031 R KEGG: afr:AFE_2734 hypothetical protein; hypothetical protein complement(3074453..3075031) Acidithiobacillus ferrivorans SS3 11043779 YP_004785543.1 CDS Acife_3149 NC_015942.1 3075063 3076460 R PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_0813 major facilitator family transporter; major facilitator superfamily protein complement(3075063..3076460) Acidithiobacillus ferrivorans SS3 11044671 YP_004785544.1 CDS Acife_3150 NC_015942.1 3076918 3077811 R PFAM: Chloride channel, voltage gated; KEGG: afr:AFE_0814 voltage-gated chloride channel; Cl- channel voltage-gated family protein complement(3076918..3077811) Acidithiobacillus ferrivorans SS3 11044672 YP_004785545.1 CDS Acife_3151 NC_015942.1 3077825 3079672 R PFAM: Chloride channel, voltage gated; KEGG: afe:Lferr_0957 chloride channel core protein; Cl- channel voltage-gated family protein complement(3077825..3079672) Acidithiobacillus ferrivorans SS3 11043780 YP_004785546.1 CDS Acife_3152 NC_015942.1 3079763 3080686 D PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afe:Lferr_0958 LysR family transcriptional regulator; LysR family transcriptional regulator 3079763..3080686 Acidithiobacillus ferrivorans SS3 11043781 YP_004785547.1 CDS Acife_3154 NC_015942.1 3080977 3082116 R PFAM: Major facilitator superfamily MFS-1; KEGG: afe:Lferr_1533 major facilitator superfamily protein; major facilitator superfamily protein complement(3080977..3082116) Acidithiobacillus ferrivorans SS3 11044673 YP_004785548.1 CDS Acife_3155 NC_015942.1 3082113 3083630 R PFAM: Glucose-methanol-choline oxidoreductase, C-terminal; FAD dependent oxidoreductase; KEGG: afe:Lferr_1534 FAD dependent oxidoreductase; GMC oxidoreductase complement(3082113..3083630) Acidithiobacillus ferrivorans SS3 11043783 YP_004785549.1 CDS Acife_3156 NC_015942.1 3083633 3084418 R PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_2225 glucose 1-dehydrogenase, putative; short-chain dehydrogenase/reductase SDR complement(3083633..3084418) Acidithiobacillus ferrivorans SS3 11043784 YP_004785550.1 CDS Acife_3157 NC_015942.1 3084415 3086778 R PFAM: Glucodextranase N; Glycoside hydrolase 15-related; KEGG: afr:AFE_2224 glycosyl hydrolase, family 15; glucodextranase N complement(3084415..3086778) Acidithiobacillus ferrivorans SS3 11043785 YP_004785551.1 CDS Acife_3158 NC_015942.1 3087015 3089612 R TIGRFAM: Diguanylate cyclase, predicted; Twin-arginine translocation pathway, signal sequence; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: dar:Daro_3990 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase complement(3087015..3089612) Acidithiobacillus ferrivorans SS3 11043786 YP_004785552.1 CDS Acife_3160 NC_015942.1 3090275 3091048 D KEGG: ana:alr7162 hypothetical protein; hypothetical protein 3090275..3091048 Acidithiobacillus ferrivorans SS3 11043788 YP_004785553.1 CDS Acife_3161 NC_015942.1 3091436 3092944 R PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_0922 drug resistance transporter, EmrB/QacA family; major facilitator superfamily protein complement(3091436..3092944) Acidithiobacillus ferrivorans SS3 11043789 YP_004785554.1 CDS Acife_3162 NC_015942.1 3093228 3094286 D PFAM: Uncharacterised conserved protein UCP012641; KEGG: hna:Hneap_2071 protein of unknown function UCP012641; hypothetical protein 3093228..3094286 Acidithiobacillus ferrivorans SS3 11043790 YP_004785555.1 CDS Acife_3165 NC_015942.1 3095504 3095764 R KEGG: afr:AFE_3174 prevent-host-death family protein; prevent-host-death family protein complement(3095504..3095764) Acidithiobacillus ferrivorans SS3 11043791 YP_004785556.1 CDS Acife_3166 NC_015942.1 3096015 3096899 R KEGG: pna:Pnap_0429 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core; integrase catalytic subunit complement(3096015..3096899) Acidithiobacillus ferrivorans SS3 11043792 YP_004785557.1 CDS Acife_3167 NC_015942.1 3096896 3097183 R PFAM: Transposase IS3/IS911; KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(3096896..3097183) Acidithiobacillus ferrivorans SS3 11043793 YP_004785558.1 CDS Acife_3169 NC_015942.1 3097853 3098248 D manually curated; KEGG: afe:Lferr_0145 transposase family protein; transposase family protein 3097853..3098248 Acidithiobacillus ferrivorans SS3 11044676 YP_004785559.1 CDS Acife_3170 NC_015942.1 3098353 3098898 R KEGG: afr:AFE_0876 hypothetical protein; hypothetical protein complement(3098353..3098898) Acidithiobacillus ferrivorans SS3 11043795 YP_004785560.1 CDS Acife_3171 NC_015942.1 3099231 3100115 R KEGG: pna:Pnap_0429 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core; integrase catalytic subunit complement(3099231..3100115) Acidithiobacillus ferrivorans SS3 11044677 YP_004785561.1 CDS Acife_3172 NC_015942.1 3100112 3100399 R PFAM: Transposase IS3/IS911; KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(3100112..3100399) Acidithiobacillus ferrivorans SS3 11044678 YP_004785562.1 CDS Acife_3174 NC_015942.1 3102851 3103711 D KEGG: bph:Bphy_5150 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein 3102851..3103711 Acidithiobacillus ferrivorans SS3 11043797 YP_004785563.1 CDS Acife_3175 NC_015942.1 3103727 3105298 D TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: ABC transporter-like; Binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_6505 ABC transporter permease/ATP-binding protein; SMART: ATPase, AAA+ type, core; polar amino acid ABC transporter permease 3103727..3105298 Acidithiobacillus ferrivorans SS3 11043798 YP_004785564.1 CDS Acife_3176 NC_015942.1 3105404 3105796 D PFAM: Endoribonuclease L-PSP; KEGG: toc:Toce_1804 endoribonuclease L-PSP; endoribonuclease L-PSP 3105404..3105796 Acidithiobacillus ferrivorans SS3 11043799 YP_004785565.1 CDS Acife_3177 NC_015942.1 3105834 3106868 D PFAM: Acetamidase/Formamidase; KEGG: pla:Plav_0982 acetamidase/formamidase; acetamidase/formamidase 3105834..3106868 Acidithiobacillus ferrivorans SS3 11044679 YP_004785566.1 CDS Acife_3178 NC_015942.1 3106907 3107113 R hypothetical protein complement(3106907..3107113) Acidithiobacillus ferrivorans SS3 11043800 YP_004785567.1 CDS Acife_3179 NC_015942.1 3107204 3107998 D PFAM: Protein of unknown function DUF81; KEGG: afr:AFE_0764 hypothetical protein; hypothetical protein 3107204..3107998 Acidithiobacillus ferrivorans SS3 11043801 YP_004785568.1 CDS Acife_3180 NC_015942.1 3108074 3108520 D manually curated; PFAM: Transcription regulator, AsnC-type, C-terminal; KEGG: tcx:Tcr_1418 AsnC family transcriptional regulator; SMART: Transcription regulator, AsnC-type; AsnC family transcriptional regulator 3108074..3108520 Acidithiobacillus ferrivorans SS3 11043802 YP_004785569.1 CDS Acife_3181 NC_015942.1 3108540 3108908 D hypothetical protein 3108540..3108908 Acidithiobacillus ferrivorans SS3 11044680 YP_004785570.1 CDS Acife_3182 NC_015942.1 3109116 3113666 D KEGG: tmz:Tmz1t_3166 hypothetical protein; hypothetical protein 3109116..3113666 Acidithiobacillus ferrivorans SS3 11044681 YP_004785571.1 CDS Acife_3183 NC_015942.1 3113947 3115125 R KEGG: ppg:PputGB1_1616 beta-lactamase domain-containing protein; beta-lactamase domain-containing protein complement(3113947..3115125) Acidithiobacillus ferrivorans SS3 11043803 YP_004785572.1 CDS Acife_3184 NC_015942.1 3115257 3115979 R SMART: Protein phosphatase 2C-related; KEGG: bae:BATR1942_05675 phosphorylated protein phosphatase; protein serine/threonine phosphatase complement(3115257..3115979) Acidithiobacillus ferrivorans SS3 11043804 YP_004785573.1 CDS Acife_3185 NC_015942.1 3115976 3117313 R KEGG: mmb:Mmol_0663 serine/threonine protein kinase; PFAM: Tyrosine-protein kinase, catalytic domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, subgroup, catalytic domain; serine/threonine protein kinase complement(3115976..3117313) Acidithiobacillus ferrivorans SS3 11043805 YP_004785574.1 CDS Acife_3186 NC_015942.1 3117577 3117714 D hypothetical protein 3117577..3117714 Acidithiobacillus ferrivorans SS3 11044682 YP_004785575.1 CDS Acife_3187 NC_015942.1 3117731 3119575 R TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; KEGG: afr:AFE_3200 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); glucosamine--fructose-6-phosphate aminotransferase complement(3117731..3119575) Acidithiobacillus ferrivorans SS3 11043806 YP_004785576.1 CDS Acife_3188 NC_015942.1 3119622 3120989 R TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: afr:AFE_3201 UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Bacterial transferase hexapeptide repeat; bifunctional protein glmU complement(3119622..3120989) Acidithiobacillus ferrivorans SS3 11043807 YP_004785577.1 CDS Acife_3189 NC_015942.1 3121121 3121546 R TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; HAMAP: ATPase, F1 complex, delta/epsilon subunit; KEGG: afr:AFE_3202 F0F1 ATP synthase subunit epsilon; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; ATPase, F1 complex, delta/epsilon subunit, C-terminal; ATP synthase subunit epsilon complement(3121121..3121546) Acidithiobacillus ferrivorans SS3 11043808 YP_004785578.1 CDS Acife_3190 NC_015942.1 3121550 3122959 R SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, F1 complex, beta subunit; KEGG: afr:AFE_3203 ATP synthase F1, beta subunit; HAMAP: ATPase, F1 complex, beta subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATP synthase subunit beta complement(3121550..3122959) Acidithiobacillus ferrivorans SS3 11043809 YP_004785579.1 CDS Acife_3191 NC_015942.1 3123001 3123867 R TIGRFAM: ATPase, F1 complex, gamma subunit; HAMAP: ATP synthase gamma chain; KEGG: afr:AFE_3204 F0F1 ATP synthase subunit gamma; PFAM: ATPase, F1 complex, gamma subunit; ATP synthase subunit gamma complement(3123001..3123867) Acidithiobacillus ferrivorans SS3 11044683 YP_004785580.1 CDS Acife_3192 NC_015942.1 3123877 3125421 R TIGRFAM: ATPase, F1 complex, alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; KEGG: afr:AFE_3205 F0F1 ATP synthase subunit alpha; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATP synthase subunit alpha complement(3123877..3125421) Acidithiobacillus ferrivorans SS3 11043810 YP_004785581.1 CDS Acife_3193 NC_015942.1 3125438 3125977 R TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; HAMAP: ATPase, F1 complex, OSCP/delta subunit; KEGG: afr:AFE_3206 ATP synthase F1, delta subunit; PFAM: ATPase, F1 complex, OSCP/delta subunit; ATP synthase subunit delta complement(3125438..3125977) Acidithiobacillus ferrivorans SS3 11043811 YP_004785582.1 CDS Acife_3194 NC_015942.1 3125988 3126467 R TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATP synthase subunit b; KEGG: afr:AFE_3207 ATP synthase F0, B subunit; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; ATP synthase subunit b complement(3125988..3126467) Acidithiobacillus ferrivorans SS3 11043812 YP_004785583.1 CDS Acife_3195 NC_015942.1 3126510 3126764 R TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: afr:AFE_3208 ATP synthase F0, C subunit; PFAM: ATPase, F0/V0 complex, subunit C; ATP synthase subunit c complement(3126510..3126764) Acidithiobacillus ferrivorans SS3 11043813 YP_004785584.1 CDS Acife_3196 NC_015942.1 3126807 3127556 R TIGRFAM: ATPase, F0 complex, subunit A; HAMAP: ATP synthase subunit a; KEGG: afr:AFE_3209 ATP synthase F0, A subunit; PFAM: ATPase, F0 complex, subunit A; ATP synthase subunit a complement(3126807..3127556) Acidithiobacillus ferrivorans SS3 11043814 YP_004785585.1 CDS Acife_3197 NC_015942.1 3127559 3127930 R KEGG: afr:AFE_3210 hypothetical protein; hypothetical protein complement(3127559..3127930) Acidithiobacillus ferrivorans SS3 11044684 YP_004785586.1 CDS Acife_3198 NC_015942.1 3128021 3128869 R TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: afr:AFE_3211 ParB family protein; SMART: ParB-like nuclease; parB-like partition protein complement(3128021..3128869) Acidithiobacillus ferrivorans SS3 11043815 YP_004785587.1 CDS Acife_3199 NC_015942.1 3128866 3129648 R PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: afr:AFE_3212 chromosome partitioning protein ParA; cobyrinic acid ac-diamide synthase complement(3128866..3129648) Acidithiobacillus ferrivorans SS3 11043816 YP_004785588.1 CDS Acife_3200 NC_015942.1 3129716 3130357 R TIGRFAM: rRNA small subunit methyltransferase G; HAMAP: rRNA small subunit methyltransferase G; KEGG: afr:AFE_3213 methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G; ribosomal RNA small subunit methyltransferase G complement(3129716..3130357) Acidithiobacillus ferrivorans SS3 11043817 YP_004785589.1 CDS Acife_3201 NC_015942.1 3130363 3132237 R TIGRFAM: Glucose-inhibited division protein A; HAMAP: Glucose-inhibited division protein A; KEGG: afr:AFE_3214 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related; tRNA uridine 5-carboxymethylaminomethyl modification protein MnmG complement(3130363..3132237) Acidithiobacillus ferrivorans SS3 11043818 YP_004785590.1 CDS Acife_3202 NC_015942.1 3132245 3132700 R KEGG: afr:AFE_3215 lipoprotein, putative; lipoprotein complement(3132245..3132700) Acidithiobacillus ferrivorans SS3 11043819 YP_004785591.1 CDS Acife_3203 NC_015942.1 3132694 3133233 R PFAM: Methyltransferase type 12; KEGG: afr:AFE_3216 hypothetical protein; type 12 methyltransferase complement(3132694..3133233) Acidithiobacillus ferrivorans SS3 11043820 YP_004785592.1 CDS Acife_3204 NC_015942.1 3133244 3133786 R KEGG: afr:AFE_3217 molybdenum cofactor biosynthesis protein B; TIGRFAM: Molybdenum cofactor biosynthesis protein B, proteobacteria; Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; molybdenum cofactor biosynthesis protein B complement(3133244..3133786) Acidithiobacillus ferrivorans SS3 11044685 YP_004785593.1 CDS Acife_3205 NC_015942.1 3133933 3134862 D PFAM: Mg2+ transporter protein, CorA-like; KEGG: afr:AFE_3218 magnesium and cobalt transport protein, putative; Mg2 transporter protein CorA family protein 3133933..3134862 Acidithiobacillus ferrivorans SS3 11043821 YP_004785594.1 CDS Acife_3206 NC_015942.1 3134893 3135834 D PFAM: Mg2+ transporter protein, CorA-like; KEGG: afr:AFE_3219 magnesium and cobalt transport protein, putative; Mg2 transporter protein CorA family protein 3134893..3135834 Acidithiobacillus ferrivorans SS3 11043822 YP_004785595.1 CDS Acife_3207 NC_015942.1 3135844 3136743 D KEGG: afr:AFE_3220 hypothetical protein; hypothetical protein 3135844..3136743 Acidithiobacillus ferrivorans SS3 11043823 YP_004785596.1 CDS Acife_3208 NC_015942.1 3136754 3137668 D PFAM: Mg2+ transporter protein, CorA-like; KEGG: afe:Lferr_2825 Mg2 transporter protein CorA family protein; Mg2 transporter protein CorA family protein 3136754..3137668 Acidithiobacillus ferrivorans SS3 11043824 YP_004785597.1 CDS Acife_3209 NC_015942.1 3137831 3138400 D PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: afr:AFE_2216 hypothetical protein; Isoprenylcysteine carboxyl methyltransferase 3137831..3138400 Acidithiobacillus ferrivorans SS3 11044686 YP_004785598.1 CDS Acife_3210 NC_015942.1 3138406 3139638 R PFAM: Cysteine-rich region, CCG; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: afr:AFE_1663 glycolate oxidase, iron-sulfur subunit; hypothetical protein complement(3138406..3139638) Acidithiobacillus ferrivorans SS3 11044687 YP_004785599.1 CDS Acife_3211 NC_015942.1 3139648 3140712 R PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; KEGG: afr:AFE_1664 glycolate oxidase FAD binding subunit; FAD linked oxidase domain-containing protein complement(3139648..3140712) Acidithiobacillus ferrivorans SS3 11043825 YP_004785600.1 CDS Acife_3212 NC_015942.1 3140714 3142213 R PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; KEGG: afe:Lferr_1362 D-lactate dehydrogenase (cytochrome); FAD linked oxidase domain-containing protein complement(3140714..3142213) Acidithiobacillus ferrivorans SS3 11043826 YP_004785601.1 CDS Acife_3213 NC_015942.1 3142158 3143489 R PFAM: Protein of unknown function, DUF1537; KEGG: afr:AFE_1666 hypothetical protein; type III effector Hrp-dependent outer protein complement(3142158..3143489) Acidithiobacillus ferrivorans SS3 11043827 YP_004785602.1 CDS Acife_3214 NC_015942.1 3143501 3145720 R PFAM: Transketolase-like, pyrimidine-binding domain; KEGG: afe:Lferr_1364 transketolase central region; transketolase central region complement(3143501..3145720) Acidithiobacillus ferrivorans SS3 11043828 YP_004785603.1 CDS Acife_3215 NC_015942.1 3145817 3146608 D KEGG: afr:AFE_1668 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR, N-terminal; Transcriptional regulator IclR, C-terminal; SMART: Transcriptional regulator IclR, N-terminal; IclR family transcriptional regulator 3145817..3146608 Acidithiobacillus ferrivorans SS3 11044688 YP_004785604.1 CDS Acife_3216 NC_015942.1 3146747 3147007 D KEGG: gur:Gura_4195 hypothetical protein; hypothetical protein 3146747..3147007 Acidithiobacillus ferrivorans SS3 11044689 YP_004785605.1 CDS Acife_3217 NC_015942.1 3146962 3147294 D PFAM: Protein of unknown function DUF2442; KEGG: afe:Lferr_0674 hypothetical protein; hypothetical protein 3146962..3147294 Acidithiobacillus ferrivorans SS3 11043829 YP_004785606.1 CDS Acife_3218 NC_015942.1 3147514 3149559 R PFAM: Glycosyl transferase, group 1; Glycosyl transferase, family 2; KEGG: dia:Dtpsy_0558 group 1 glycosyl transferase; group 1 glycosyl transferase complement(3147514..3149559) Acidithiobacillus ferrivorans SS3 11043830 YP_004785607.1 CDS Acife_3219 NC_015942.1 3149581 3150114 R PFAM: GCN5-related N-acetyltransferase; KEGG: dat:HRM2_25220 putative acetyltransferase (GNAT-family protein); GCN5-like N-acetyltransferase complement(3149581..3150114) Acidithiobacillus ferrivorans SS3 11043831 YP_004785608.1 CDS Acife_3220 NC_015942.1 3150062 3150331 R PFAM: Protein of unknown function DUF1778; KEGG: tau:Tola_0700 hypothetical protein; hypothetical protein complement(3150062..3150331) Acidithiobacillus ferrivorans SS3 11043832 YP_004785609.1 CDS Acife_3222 NC_015942.1 3150702 3151892 R PFAM: Transposase (putative), IS66 Orf2 like; Transposase, IS66; KEGG: afe:Lferr_1326 transposase IS66; IS66 Orf2 family protein complement(3150702..3151892) Acidithiobacillus ferrivorans SS3 11043834 YP_004785610.1 CDS Acife_3223 NC_015942.1 3151968 3152321 R hypothetical protein complement(3151968..3152321) Acidithiobacillus ferrivorans SS3 11043835 YP_004785611.1 CDS Acife_3224 NC_015942.1 3152957 3154648 D KEGG: gpb:HDN1F_35290 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; HNH endonuclease; SMART: HNH nuclease; RNA-directed DNA polymerase 3152957..3154648 Acidithiobacillus ferrivorans SS3 11043836 YP_004785612.1 CDS Acife_3227 NC_015942.1 3156018 3157154 R KEGG: aca:ACP_0693 glycosyl transferase, group 2 family; manually curated; PFAM: Glycosyl transferase, family 2; family 2 glycosyl transferase complement(3156018..3157154) Acidithiobacillus ferrivorans SS3 11043839 YP_004785613.1 CDS Acife_3228 NC_015942.1 3157278 3158258 R KEGG: afr:AFE_1342 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucose 4-epimerase complement(3157278..3158258) Acidithiobacillus ferrivorans SS3 11043840 YP_004785614.1 CDS Acife_3229 NC_015942.1 3158258 3160315 R KEGG: eha:Ethha_0741 hypothetical protein; hypothetical protein complement(3158258..3160315) Acidithiobacillus ferrivorans SS3 11044690 YP_004785615.1 CDS Acife_3230 NC_015942.1 3160349 3161293 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: bph:Bphy_2297 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(3160349..3161293) Acidithiobacillus ferrivorans SS3 11044691 YP_004785616.1 CDS Acife_3231 NC_015942.1 3161290 3164022 R PFAM: Rhamnan synthesis F; Glycosyl transferase, group 1; KEGG: nmu:Nmul_A2403 glycosyl transferase, group 1; Rhamnan synthesis F complement(3161290..3164022) Acidithiobacillus ferrivorans SS3 11043841 YP_004785617.1 CDS Acife_3232 NC_015942.1 3164015 3165046 R KEGG: met:M446_6083 hypothetical protein; hypothetical protein complement(3164015..3165046) Acidithiobacillus ferrivorans SS3 11043842 YP_004785618.1 CDS Acife_3233 NC_015942.1 3165246 3165950 R KEGG: cre:CHLREDRAFT_196838 O-methyltransferase; hypothetical protein complement(3165246..3165950) Acidithiobacillus ferrivorans SS3 11044692 YP_004785619.1 CDS Acife_3235 NC_015942.1 3166457 3166855 R PFAM: GtrA-like protein; KEGG: brh:RBRH_03111 hypothetical protein; GtrA family protein complement(3166457..3166855) Acidithiobacillus ferrivorans SS3 11043844 YP_004785620.1 CDS Acife_3236 NC_015942.1 3166834 3167853 R PFAM: Glycosyl transferase, family 2; KEGG: bgf:BC1003_0767 glycosyl transferase family 2; family 2 glycosyl transferase complement(3166834..3167853) Acidithiobacillus ferrivorans SS3 11043845 YP_004785621.1 CDS Acife_3237 NC_015942.1 3167850 3170588 R PFAM: Protein of unknown function, membrane YfhO; KEGG: bgf:BC1003_0768 hypothetical protein; hypothetical protein complement(3167850..3170588) Acidithiobacillus ferrivorans SS3 11043846 YP_004785622.1 CDS Acife_3238 NC_015942.1 3170585 3173926 R PFAM: Glycosyl transferase, family 2; Methyltransferase type 12; KEGG: bph:Bphy_2296 glycosyl transferase family protein; family 2 glycosyl transferase complement(3170585..3173926) Acidithiobacillus ferrivorans SS3 11043847 YP_004785623.1 CDS Acife_3239 NC_015942.1 3174131 3174880 R KEGG: pst:PSPTO_0705 O-antigen ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter complement(3174131..3174880) Acidithiobacillus ferrivorans SS3 11043848 YP_004785624.1 CDS Acife_3240 NC_015942.1 3174880 3175689 R PFAM: ABC-2 type transporter; KEGG: pst:PSPTO_0704 O-antigen ABC transporter permease; ABC transporter complement(3174880..3175689) Acidithiobacillus ferrivorans SS3 11043849 YP_004785625.1 CDS Acife_3241 NC_015942.1 3175860 3176156 D TIGRFAM: Prevent-host-death protein; prevent-host-death family protein 3175860..3176156 Acidithiobacillus ferrivorans SS3 11044693 YP_004785626.1 CDS Acife_3242 NC_015942.1 3176192 3176437 D hypothetical protein 3176192..3176437 Acidithiobacillus ferrivorans SS3 11044694 YP_004785627.1 CDS Acife_3243 NC_015942.1 3176434 3176871 D hypothetical protein 3176434..3176871 Acidithiobacillus ferrivorans SS3 11043850 YP_004785628.1 CDS Acife_3244 NC_015942.1 3177165 3177449 R PFAM: Protein of unknown function DUF1778; KEGG: bpa:BPP0379 hypothetical protein; hypothetical protein complement(3177165..3177449) Acidithiobacillus ferrivorans SS3 11043851 YP_004785629.1 CDS Acife_3245 NC_015942.1 3177421 3177660 R hypothetical protein complement(3177421..3177660) Acidithiobacillus ferrivorans SS3 11043852 YP_004785630.1 CDS Acife_3246 NC_015942.1 3177803 3178129 R PFAM: PemK-like protein; KEGG: xfa:XFa0027 plasmid maintenance protein; transcriptional modulator of MazE/toxin, MazF complement(3177803..3178129) Acidithiobacillus ferrivorans SS3 11043853 YP_004785631.1 CDS Acife_3247 NC_015942.1 3178116 3178346 R KEGG: xfa:XFa0028 hypothetical protein; hypothetical protein complement(3178116..3178346) Acidithiobacillus ferrivorans SS3 11044695 YP_004785632.1 CDS Acife_3248 NC_015942.1 3178542 3179063 R PFAM: GCN5-related N-acetyltransferase; KEGG: eba:ebA5964 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase complement(3178542..3179063) Acidithiobacillus ferrivorans SS3 11044696 YP_004785633.1 CDS Acife_3249 NC_015942.1 3179060 3179353 R PFAM: Protein of unknown function DUF1778; KEGG: pna:Pnap_1572 hypothetical protein; hypothetical protein complement(3179060..3179353) Acidithiobacillus ferrivorans SS3 11043854 YP_004785634.1 CDS Acife_3250 NC_015942.1 3179411 3180553 R KEGG: afr:AFE_0441 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-glucose 4,6-dehydratase complement(3179411..3180553) Acidithiobacillus ferrivorans SS3 11043855 YP_004785635.1 CDS Acife_3251 NC_015942.1 3180573 3181469 R KEGG: afr:AFE_0442 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase complement(3180573..3181469) Acidithiobacillus ferrivorans SS3 11043856 YP_004785636.1 CDS Acife_3252 NC_015942.1 3181466 3182014 R KEGG: afr:AFE_3294 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(3181466..3182014) Acidithiobacillus ferrivorans SS3 11043857 YP_004785637.1 CDS Acife_3253 NC_015942.1 3182011 3182895 R KEGG: afr:AFE_3295 glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase complement(3182011..3182895) Acidithiobacillus ferrivorans SS3 11044697 YP_004785638.1 CDS Acife_3254 NC_015942.1 3183105 3184481 D PFAM: General substrate transporter; KEGG: afr:AFE_3296 major facilitator family transporter; general substrate transporter 3183105..3184481 Acidithiobacillus ferrivorans SS3 11043858 YP_004785639.1 CDS Acife_3255 NC_015942.1 3184495 3185196 R KEGG: afr:AFE_3297 TonB family protein; TonB family protein complement(3184495..3185196) Acidithiobacillus ferrivorans SS3 11043859 YP_004785640.1 CDS Acife_3256 NC_015942.1 3185193 3186185 R PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; KEGG: afr:AFE_3298 delta-aminolevulinic acid dehydratase; delta-aminolevulinic acid dehydratase complement(3185193..3186185) Acidithiobacillus ferrivorans SS3 11043860 YP_004785641.1 CDS Acife_3257 NC_015942.1 3186182 3186970 R PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; KEGG: afr:AFE_3299 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 complement(3186182..3186970) Acidithiobacillus ferrivorans SS3 11043861 YP_004785642.1 CDS Acife_3258 NC_015942.1 3186967 3187887 R TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; HAMAP: Porphobilinogen deaminase; KEGG: afr:AFE_3300 porphobilinogen deaminase; PFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; porphobilinogen deaminase complement(3186967..3187887) Acidithiobacillus ferrivorans SS3 11043862 YP_004785643.1 CDS Acife_3259 NC_015942.1 3187935 3188264 R KEGG: afe:Lferr_2899 putative comEA-like protein; putative comEA-like protein complement(3187935..3188264) Acidithiobacillus ferrivorans SS3 11043863 YP_004785644.1 CDS Acife_3260 NC_015942.1 3188293 3188688 R PFAM: Histidine triad (HIT) protein; KEGG: afr:AFE_3302 HIT family protein; histidine triad (HIT) protein complement(3188293..3188688) Acidithiobacillus ferrivorans SS3 11043864 YP_004785645.1 CDS Acife_3261 NC_015942.1 3188685 3189977 R TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; HAMAP: Glutamate-1-semialdehyde 2,1-aminomutase; KEGG: afr:AFE_3303 glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III; glutamate-1-semialdehyde 2,1-aminomutase complement(3188685..3189977) Acidithiobacillus ferrivorans SS3 11043865 YP_004785646.1 CDS Acife_3262 NC_015942.1 3189980 3190633 R TIGRFAM: Thiamine monophosphate synthase; HAMAP: Thiamine-phosphate pyrophosphorylase; KEGG: afr:AFE_3304 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(3189980..3190633) Acidithiobacillus ferrivorans SS3 11044698 YP_004785647.1 CDS Acife_3263 NC_015942.1 3190633 3191475 R PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: afr:AFE_3305 phosphomethylpyrimidine kinase, putative; phosphomethylpyrimidine kinase type-1 complement(3190633..3191475) Acidithiobacillus ferrivorans SS3 11043866 YP_004785648.1 CDS Acife_3264 NC_015942.1 3191485 3191940 R KEGG: afr:AFE_2733 hypothetical protein; hypothetical protein complement(3191485..3191940) Acidithiobacillus ferrivorans SS3 11043867 YP_004785649.1 CDS Acife_3265 NC_015942.1 3192316 3192804 R KEGG: afe:Lferr_2754 cytochrome c-like protein; hypothetical protein complement(3192316..3192804) Acidithiobacillus ferrivorans SS3 11044699 YP_004785650.1 CDS Acife_3266 NC_015942.1 3193031 3193345 R KEGG: afr:AFE_2732 iron oxidase; iron oxidase complement(3193031..3193345) Acidithiobacillus ferrivorans SS3 11044700 YP_004785651.1 CDS Acife_3267 NC_015942.1 3193403 3194101 R PFAM: Cytochrome c1; KEGG: afr:AFE_2731 ubiquinol--cytochrome c reductase, cytochrome c1 subunit; cytochrome c1 complement(3193403..3194101) Acidithiobacillus ferrivorans SS3 11043868 YP_004785652.1 CDS Acife_3268 NC_015942.1 3194124 3195338 R PFAM: Cytochrome b/b6, N-terminal; Cytochrome b/b6, C-terminal; KEGG: afr:AFE_2730 ubiquinol--cytochrome c reductase, cytochrome b subunit; cytochrome b/b6 domain-containing protein complement(3194124..3195338) Acidithiobacillus ferrivorans SS3 11043869 YP_004785653.1 CDS Acife_3269 NC_015942.1 3195366 3195986 R KEGG: afr:AFE_2729 ubiquinol--cytochrome c reductase, iron-sulfur subunit; TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; Twin-arginine translocation pathway, signal sequence; PFAM: Rieske [2Fe-2S] iron-sulphur domain; ubiquinol-cytochrome c reductase, iron-sulfur subunit complement(3195366..3195986) Acidithiobacillus ferrivorans SS3 11043870 YP_004785654.1 CDS Acife_3270 NC_015942.1 3196017 3196826 R PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_2728 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR complement(3196017..3196826) Acidithiobacillus ferrivorans SS3 11043871 YP_004785655.1 CDS Acife_3271 NC_015942.1 3196832 3197575 R PFAM: Cytochrome c, class I; KEGG: afe:Lferr_2349 cytochrome c class I; cytochrome c class I complement(3196832..3197575) Acidithiobacillus ferrivorans SS3 11044701 YP_004785656.1 CDS Acife_3273 NC_015942.1 3198195 3199376 R PFAM: 2-nitropropane dioxygenase, NPD; KEGG: afe:Lferr_2347 2-nitropropane dioxygenase NPD; 2-nitropropane dioxygenase NPD complement(3198195..3199376) Acidithiobacillus ferrivorans SS3 11043872 YP_004785657.1 CDS Acife_3274 NC_015942.1 3199481 3199990 D PFAM: Sterol-binding; KEGG: afr:AFE_2724 hypothetical protein; Sterol-binding domain-containing protein 3199481..3199990 Acidithiobacillus ferrivorans SS3 11043873 YP_004785658.1 CDS Acife_3275 NC_015942.1 3200058 3201071 D PFAM: Peptidase U32; KEGG: afr:AFE_2723 peptidase, U32 family; peptidase U32 3200058..3201071 Acidithiobacillus ferrivorans SS3 11043874 YP_004785659.1 CDS Acife_3277 NC_015942.1 3202124 3203653 D PFAM: Protein of unknown function DUF116; Biotin/lipoate A/B protein ligase; KEGG: afr:AFE_2721 lipoate-protein ligase A, putative; hypothetical protein 3202124..3203653 Acidithiobacillus ferrivorans SS3 11043876 YP_004785660.1 CDS Acife_3278 NC_015942.1 3203674 3204399 R manually curated; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic-like; KEGG: afr:AFE_2720 anaerobic ribonucleoside-triphosphate reductase, beta subunit; PFAM: Radical SAM; anaerobic ribonucleoside-triphosphate reductase activating protein complement(3203674..3204399) Acidithiobacillus ferrivorans SS3 11043877 YP_004785661.1 CDS Acife_3279 NC_015942.1 3204412 3204618 R KEGG: afr:AFE_2719 hypothetical protein; hypothetical protein complement(3204412..3204618) Acidithiobacillus ferrivorans SS3 11043878 YP_004785662.1 CDS Acife_3280 NC_015942.1 3204638 3206665 R KEGG: afr:AFE_2718 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic; PFAM: ATP-cone; anaerobic ribonucleoside-triphosphate reductase complement(3204638..3206665) Acidithiobacillus ferrivorans SS3 11043879 Acife_R0001 tRNA Acife_R0001 NC_015942.1 83123 83198 R tRNA-Lys complement(83123..83198) Acidithiobacillus ferrivorans SS3 11041421 Acife_R0002 tRNA Acife_R0002 NC_015942.1 94973 95048 D tRNA-Phe 94973..95048 Acidithiobacillus ferrivorans SS3 11043901 Acife_R0003 tRNA Acife_R0003 NC_015942.1 183556 183632 R tRNA-Met complement(183556..183632) Acidithiobacillus ferrivorans SS3 11043923 Acife_R0004 tRNA Acife_R0004 NC_015942.1 277354 277430 D tRNA-Pro 277354..277430 Acidithiobacillus ferrivorans SS3 11041565 Acife_R0005 tRNA Acife_R0005 NC_015942.1 554392 554467 R tRNA-His complement(554392..554467) Acidithiobacillus ferrivorans SS3 11041778 Acife_R0006 tRNA Acife_R0006 NC_015942.1 555525 555599 R tRNA-Gln complement(555525..555599) Acidithiobacillus ferrivorans SS3 11041780 Acife_R0007 tRNA Acife_R0007 NC_015942.1 575052 575125 R tRNA-Gln complement(575052..575125) Acidithiobacillus ferrivorans SS3 11044022 Acife_R0008 tRNA Acife_R0008 NC_015942.1 580685 580761 D tRNA-Arg 580685..580761 Acidithiobacillus ferrivorans SS3 11044026 Acife_R0009 tRNA Acife_R0009 NC_015942.1 998396 998471 R tRNA-Arg complement(998396..998471) Acidithiobacillus ferrivorans SS3 11042101 Acife_R0010 tRNA Acife_R0010 NC_015942.1 1073398 1073474 R tRNA-Pro complement(1073398..1073474) Acidithiobacillus ferrivorans SS3 11042160 Acife_R0011 tRNA Acife_R0011 NC_015942.1 1082590 1082676 D tRNA-Leu 1082590..1082676 Acidithiobacillus ferrivorans SS3 11042170 Acife_R0012 tRNA Acife_R0012 NC_015942.1 1145688 1145780 D tRNA-Ser 1145688..1145780 Acidithiobacillus ferrivorans SS3 11042218 Acife_R0013 tRNA Acife_R0013 NC_015942.1 1205280 1205365 R tRNA-Leu complement(1205280..1205365) Acidithiobacillus ferrivorans SS3 11042281 Acife_R0015 tRNA Acife_R0015 NC_015942.1 1264671 1264746 R tRNA-Glu complement(1264671..1264746) Acidithiobacillus ferrivorans SS3 11044200 Acife_R0016 tRNA Acife_R0016 NC_015942.1 1359581 1359657 R tRNA-Arg complement(1359581..1359657) Acidithiobacillus ferrivorans SS3 11042392 Acife_R0017 tRNA Acife_R0017 NC_015942.1 1370892 1370966 D tRNA-Gly 1370892..1370966 Acidithiobacillus ferrivorans SS3 11042400 Acife_R0018 tRNA Acife_R0018 NC_015942.1 1371007 1371080 D tRNA-Cys 1371007..1371080 Acidithiobacillus ferrivorans SS3 11042401 Acife_R0019 tRNA Acife_R0019 NC_015942.1 1383185 1383261 D tRNA-Arg 1383185..1383261 Acidithiobacillus ferrivorans SS3 11042412 Acife_R0020 tRNA Acife_R0020 NC_015942.1 1384779 1384853 D tRNA-Val 1384779..1384853 Acidithiobacillus ferrivorans SS3 11042415 Acife_R0021 tRNA Acife_R0021 NC_015942.1 1390543 1390618 R tRNA-Thr complement(1390543..1390618) Acidithiobacillus ferrivorans SS3 11044229 Acife_R0022 tRNA Acife_R0022 NC_015942.1 1414051 1414126 D tRNA-Val 1414051..1414126 Acidithiobacillus ferrivorans SS3 11044234 Acife_R0023 tRNA Acife_R0023 NC_015942.1 1414138 1414214 D tRNA-Asp 1414138..1414214 Acidithiobacillus ferrivorans SS3 11042438 Acife_R0024 tRNA Acife_R0024 NC_015942.1 1444237 1444323 R tRNA-Leu complement(1444237..1444323) Acidithiobacillus ferrivorans SS3 11042455 Acife_R0025 tRNA Acife_R0025 NC_015942.1 1464512 1464602 D tRNA-Ser 1464512..1464602 Acidithiobacillus ferrivorans SS3 11042475 Acife_R0027 tRNA Acife_R0027 NC_015942.1 1602031 1602115 R tRNA-Leu complement(1602031..1602115) Acidithiobacillus ferrivorans SS3 11042590 Acife_R0028 tRNA Acife_R0028 NC_015942.1 1726463 1726538 R tRNA-Lys complement(1726463..1726538) Acidithiobacillus ferrivorans SS3 11042695 Acife_R0030 tRNA Acife_R0030 NC_015942.1 1758486 1758561 R tRNA-Ala complement(1758486..1758561) Acidithiobacillus ferrivorans SS3 11044326 Acife_R0031 tRNA Acife_R0031 NC_015942.1 1974941 1975016 R tRNA-Asn complement(1974941..1975016) Acidithiobacillus ferrivorans SS3 11042888 Acife_R0032 tRNA Acife_R0032 NC_015942.1 2165756 2165846 R tRNA-Ser complement(2165756..2165846) Acidithiobacillus ferrivorans SS3 11043028 Acife_R0033 tRNA Acife_R0033 NC_015942.1 2234785 2234860 R tRNA-Thr complement(2234785..2234860) Acidithiobacillus ferrivorans SS3 11043085 Acife_R0034 tRNA Acife_R0034 NC_015942.1 2276815 2276884 R tRNA-Ser complement(2276815..2276884) Acidithiobacillus ferrivorans SS3 11043116 Acife_R0035 tRNA Acife_R0035 NC_015942.1 2380208 2380284 R tRNA-Met complement(2380208..2380284) Acidithiobacillus ferrivorans SS3 11044481 Acife_R0036 tRNA Acife_R0036 NC_015942.1 2397808 2397883 D tRNA-Ala 2397808..2397883 Acidithiobacillus ferrivorans SS3 11044484 Acife_R0037 tRNA Acife_R0037 NC_015942.1 2412349 2412424 R tRNA-Glu complement(2412349..2412424) Acidithiobacillus ferrivorans SS3 11043205 Acife_R0038 tRNA Acife_R0038 NC_015942.1 2422433 2422506 D tRNA-Gly 2422433..2422506 Acidithiobacillus ferrivorans SS3 11043215 Acife_R0039 tRNA Acife_R0039 NC_015942.1 2518569 2518645 R tRNA-Pro complement(2518569..2518645) Acidithiobacillus ferrivorans SS3 11043296 Acife_R0040 tRNA Acife_R0040 NC_015942.1 2525978 2526052 R tRNA-Val complement(2525978..2526052) Acidithiobacillus ferrivorans SS3 11043304 Acife_R0041 tRNA Acife_R0041 NC_015942.1 2540715 2540799 R tRNA-Leu complement(2540715..2540799) Acidithiobacillus ferrivorans SS3 11043315 Acife_R0044 tRNA Acife_R0044 NC_015942.1 2641626 2641701 R tRNA-Ala complement(2641626..2641701) Acidithiobacillus ferrivorans SS3 11043393 Acife_R0045 tRNA Acife_R0045 NC_015942.1 2641705 2641781 R tRNA-Ile complement(2641705..2641781) Acidithiobacillus ferrivorans SS3 11043394 Acife_R0047 tRNA Acife_R0047 NC_015942.1 2643489 2643565 R tRNA-Met complement(2643489..2643565) Acidithiobacillus ferrivorans SS3 11043396 Acife_R0048 tRNA Acife_R0048 NC_015942.1 2701137 2701212 R tRNA-Trp complement(2701137..2701212) Acidithiobacillus ferrivorans SS3 11043449 Acife_R0049 tRNA Acife_R0049 NC_015942.1 2702504 2702579 R tRNA-Thr complement(2702504..2702579) Acidithiobacillus ferrivorans SS3 11043451 Acife_R0050 tRNA Acife_R0050 NC_015942.1 2702588 2702661 R tRNA-Gly complement(2702588..2702661) Acidithiobacillus ferrivorans SS3 11043452 Acife_R0051 tRNA Acife_R0051 NC_015942.1 2702721 2702805 R tRNA-Tyr complement(2702721..2702805) Acidithiobacillus ferrivorans SS3 11043453 Acife_R0055 tRNA Acife_R0055 NC_015942.1 3023773 3023848 R tRNA-Ala complement(3023773..3023848) Acidithiobacillus ferrivorans SS3 11043732 Acife_R0056 tRNA Acife_R0056 NC_015942.1 3023852 3023928 R tRNA-Ile complement(3023852..3023928) Acidithiobacillus ferrivorans SS3 11043733 Acife_R0042 rRNA Acife_R0042 NC_015942.1 2638281 2638396 R 5S ribosomal RNA complement(2638281..2638396) Acidithiobacillus ferrivorans SS3 11044547 Acife_R0043 rRNA Acife_R0043 NC_015942.1 2638494 2641381 R 23S ribosomal RNA complement(2638494..2641381) Acidithiobacillus ferrivorans SS3 11043392 Acife_R0046 rRNA Acife_R0046 NC_015942.1 2641832 2643355 R 16S ribosomal RNA complement(2641832..2643355) Acidithiobacillus ferrivorans SS3 11043395 Acife_R0053 rRNA Acife_R0053 NC_015942.1 3020428 3020543 R 5S ribosomal RNA complement(3020428..3020543) Acidithiobacillus ferrivorans SS3 11044658 Acife_R0054 rRNA Acife_R0054 NC_015942.1 3020641 3023528 R 23S ribosomal RNA complement(3020641..3023528) Acidithiobacillus ferrivorans SS3 11043731 Acife_R0057 rRNA Acife_R0057 NC_015942.1 3023979 3025502 R 16S ribosomal RNA complement(3023979..3025502) Acidithiobacillus ferrivorans SS3 11043734