-- dump date   	20140618_184956
-- class       	Genbank::CDS
-- table       	cds_note
-- id	note
YP_004782570.1	SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: afr:AFE_3309 chromosomal replication initiator protein DnaA; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal
YP_004782571.1	TIGRFAM: DNA polymerase III, beta chain; PFAM: DNA polymerase III, beta chain; KEGG: afr:AFE_0001 DNA polymerase III, beta subunit; SMART: DNA polymerase III, beta chain
YP_004782572.1	TIGRFAM: DNA-binding, RecF; HAMAP: DNA replication and repair protein recF; KEGG: afr:AFE_0002 DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC protein, N-terminal
YP_004782573.1	TIGRFAM: DNA gyrase, subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; KEGG: afr:AFE_0003 DNA gyrase, B subunit; SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like
YP_004782574.1	manually curated; KEGG: afr:AFE_1422 Ser/Thr protein phosphatase family protein
YP_004782575.1	manually curated; KEGG: afr:AFE_0004 hypothetical protein
YP_004782576.1	TIGRFAM: Septum formation topological specificity factor MinE; HAMAP: Septum formation topological specificity factor MinE; KEGG: afr:AFE_0011 cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE
YP_004782577.1	KEGG: afr:AFE_0012 septum site-determining protein MinD; TIGRFAM: Septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase
YP_004782578.1	TIGRFAM: Septum formation inhibitor MinC; HAMAP: Septum formation inhibitor MinC; KEGG: afe:Lferr_0014 septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC, C-terminal; Septum formation inhibitor MinC, N-terminal
YP_004782579.1	PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: afr:AFE_0014 ferredoxin
YP_004782580.1	TIGRFAM: DNA topoisomerase I, bacterial-type; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger; KEGG: afr:AFE_0015 DNA topoisomerase I; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup
YP_004782581.1	KEGG: afr:AFE_0016 smg family protein; HAMAP: Protein smg; PFAM: Protein of unknown function DUF494
YP_004782582.1	KEGG: afr:AFE_0017 DNA processing protein DprA, putative; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A
YP_004782583.1	KEGG: afr:AFE_0018 LysM domain protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup
YP_004782584.1	TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: afr:AFE_0019 polypeptide deformylase; PFAM: Formylmethionine deformylase
YP_004782585.1	TIGRFAM: Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; KEGG: afr:AFE_0020 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal
YP_004782586.1	KEGG: afr:AFE_0021 sun protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44
YP_004782587.1	KEGG: afr:AFE_0022 hypothetical protein
YP_004782588.1	KEGG: afe:Lferr_0024 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain
YP_004782589.1	KEGG: afr:AFE_0024 nitrogen assimilation regulatory protein NtrX, putative; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region
YP_004782590.1	KEGG: afe:Lferr_0031 hypothetical protein
YP_004782591.1	KEGG: ppd:Ppro_1391 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain
YP_004782593.1	PFAM: Glycosyltransferase 36; Putative carbohydrate binding; Glycosyltransferase 36 associated; KEGG: nit:NAL212_0278 hypothetical protein
YP_004782596.1	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; GAF; KEGG: afe:Lferr_2664 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; GAF; PAC motif
YP_004782597.1	KEGG: tmz:Tmz1t_2038 arsenate reductase and related; TIGRFAM: Conserved hypothetical protein, ArsC related; PFAM: Arsenate reductase-like
YP_004782598.1	PFAM: Protein of unknown function DUF185; KEGG: afr:AFE_0130 hypothetical protein
YP_004782599.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_0129 oxidoreductase, short-chain dehydrogenase/reductase family
YP_004782600.1	PFAM: NIF system FeS cluster assembly, NifU, C-terminal; KEGG: afr:AFE_0128 NifU domain protein
YP_004782601.1	SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; KEGG: afr:AFE_0127 ribosomal protein S12 methylthiotransferase; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM
YP_004782602.1	KEGG: afr:AFE_0126 dihydroneopterin aldolase; TIGRFAM: Dihydroneopterin aldolase; Dihydroneopterin aldolase subgroup; PFAM: Dihydroneopterin aldolase
YP_004782603.1	TIGRFAM: Membrane protein YgiH; HAMAP: Protein of unknown function DUF205; KEGG: afr:AFE_0125 hypothetical protein; PFAM: Protein of unknown function DUF205
YP_004782604.1	TIGRFAM: putative glycoprotease GCP; Peptidase M22, glycoprotease, subgroup; HAMAP: O-sialoglycoprotein endopeptidase; KEGG: afr:AFE_0123 O-sialoglycoprotein endopeptidase; PFAM: Peptidase M22, glycoprotease
YP_004782605.1	PFAM: Protein of unknown function DUF455; KEGG: cti:RALTA_A1173 hypothetical protein
YP_004782606.1	PFAM: Pyrrolo-quinoline quinone repeat; KEGG: afr:AFE_0029 tetrathionate hydrolase
YP_004782607.1	TIGRFAM: Prevent-host-death protein; KEGG: nde:NIDE2383 addiction module antitoxin YefM
YP_004782608.1	KEGG: nde:NIDE2382 addiction module toxin YoeB; TIGRFAM: Addiction module toxin, Txe/YoeB; PFAM: Addiction module toxin, Txe/YoeB
YP_004782609.1	KEGG: eba:ebB112 hypothetical protein
YP_004782610.1	KEGG: neu:NE1589 hypothetical protein
YP_004782611.1	KEGG: tin:Tint_0628 hypothetical protein
YP_004782612.1	PFAM: Protein of unknown function DUF497; KEGG: tin:Tint_0627 protein of unknown function DUF497
YP_004782615.1	PFAM: NUDIX hydrolase domain; KEGG: azo:azo3712 hypothetical protein
YP_004782616.1	PFAM: Acriflavin resistance protein; KEGG: afe:Lferr_0111 acriflavin resistance protein
YP_004782617.1	KEGG: afr:AFE_0109 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004782618.1	KEGG: afr:AFE_0108 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein
YP_004782619.1	KEGG: afr:AFE_0107 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region
YP_004782620.1	KEGG: afr:AFE_0106 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region
YP_004782621.1	KEGG: afr:AFE_0105 metal ion transporter, NRAMP family
YP_004782622.1	PFAM: PspA/IM30; KEGG: afr:AFE_2017 PspA/IM30 family
YP_004782623.1	KEGG: afr:AFE_2788 hypothetical protein; HAMAP: UPF0145 protein ybjQ; PFAM: Uncharacterised protein family UPF0145
YP_004782624.1	KEGG: afr:AFE_0467 hypothetical protein
YP_004782625.1	KEGG: afr:AFE_0104 hypothetical protein
YP_004782626.1	PFAM: Protein of unknown function DUF2495; KEGG: afr:AFE_3115 hypothetical protein
YP_004782627.1	KEGG: afr:AFE_0137 hypothetical protein
YP_004782628.1	KEGG: nwi:Nwi_0671 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004782629.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: nwi:Nwi_0673 binding-protein dependent transport system inner membrane protein
YP_004782630.1	KEGG: nwi:Nwi_0674 ABC transporter sulfonate/nitrate transport system substrate-binding protein
YP_004782631.1	manually curated; KEGG: afe:Lferr_0430 hypothetical protein
YP_004782632.1	KEGG: afr:AFE_0004 hypothetical protein
YP_004782633.1	PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: hha:Hhal_1658 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein
YP_004782634.1	PFAM: PBS lyase HEAT-like repeat; HEAT; KEGG: bch:Bcen2424_1977 heat domain-containing protein
YP_004782635.1	PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: vpe:Varpa_2478 ferredoxin
YP_004782636.1	PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; KEGG: vpe:Varpa_2479 fumarate reductase/succinate dehydrogenase flavoprotein domain protein
YP_004782637.1	KEGG: cti:RALTA_B2018 transcriptional regulator GntR family; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR
YP_004782638.1	TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; Radical SAM; KEGG: afr:AFE_0134 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB
YP_004782639.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_0135 transcriptional regulator, LysR family
YP_004782640.1	PFAM: Outer membrane porin, bacterial; KEGG: afr:AFE_0137 hypothetical protein
YP_004782641.1	KEGG: afe:Lferr_0311 lipopolysaccharide heptosyltransferase II; TIGRFAM: Lipopolysaccharide heptosyltransferase II; PFAM: Glycosyl transferase, family 9
YP_004782642.1	PFAM: Protein of unknown function DUF155; KEGG: afr:AFE_0139 hypothetical protein
YP_004782643.1	PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; KEGG: afr:AFE_0140 oxidase, FAD-binding
YP_004782644.1	TIGRFAM: RfaE bifunctional protein, domain II; Cytidyltransferase-related; HAMAP: Phosphoheptose isomerase; KEGG: afr:AFE_0141 phosphoheptose isomerase/cytidylyltransferase; PFAM: Cytidylyltransferase; Sugar isomerase (SIS)
YP_004782645.1	TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: afr:AFE_0142 conserved hypothetical protein TIGR00252; PFAM: Uncharacterised protein family UPF0102
YP_004782646.1	KEGG: afr:AFE_0143 lipoprotein, putative
YP_004782647.1	TIGRFAM: Uncharacterised protein family UPF0011; HAMAP: Ribosomal RNA small subunit methyltransferase I; KEGG: afr:AFE_0144 tetrapyrrole methylase family protein; PFAM: Tetrapyrrole methylase
YP_004782648.1	PFAM: Di-haem cytochrome c peroxidase; KEGG: acr:Acry_2827 cytochrome-c peroxidase
YP_004782649.1	PFAM: ResB-like; KEGG: afr:AFE_3112 cytochrome c-type biogenesis protein ResB
YP_004782650.1	KEGG: afe:Lferr_2711 cytochrome c-type biogenesis protein CcsB; TIGRFAM: Cytochrome c-type biogenesis protein CcsA; PFAM: Cytochrome c assembly protein
YP_004782651.1	KEGG: afr:AFE_0590 cold-shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004782653.1	TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; PAS fold-4; KEGG: afe:Lferr_2664 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate cyclase, predicted; GAF; Diguanylate phosphodiesterase, predicted
YP_004782654.1	KEGG: afr:AFE_2954 ribonuclease, Rne/Rng family; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain
YP_004782655.1	TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: afr:AFE_2953 maf protein; PFAM: Maf-like protein
YP_004782656.1	KEGG: afe:Lferr_2565 hypothetical protein
YP_004782657.1	KEGG: afe:Lferr_2564 hypothetical protein
YP_004782658.1	KEGG: afr:AFE_2950 rRNA large subunit methyltransferase; HAMAP: Ribosomal RNA large subunit methyltransferase H; PFAM: SPOUT methyltransferase, predicted
YP_004782659.1	KEGG: afr:AFE_2949 iojap-related protein; TIGRFAM: Iojap-related protein; PFAM: Iojap-related protein
YP_004782660.1	TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; HAMAP: nicotinate-nucleotide adenylyltransferase; KEGG: afr:AFE_2948 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: Cytidylyltransferase
YP_004782661.1	KEGG: afr:AFE_2947 thiol:disulfide interchange protein DsbG, putative
YP_004782662.1	TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: afr:AFE_2946 peptide-methionine (S)-S-oxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA
YP_004782663.1	TIGRFAM: Methionine sulphoxide reductase B; HAMAP: Peptide methionine sulfoxide reductase msrB; KEGG: afr:AFE_2945 methionine-R-sulfoxide reductase; PFAM: Methionine sulphoxide reductase B
YP_004782664.1	KEGG: afr:AFE_0961 hypothetical protein
YP_004782665.1	PFAM: Glucan biosynthesis, periplasmic, MdoG C-terminal; KEGG: afr:AFE_0960 glucan biosynthesis protein D
YP_004782667.1	PFAM: Signal transduction response regulator, C-terminal; KEGG: afe:Lferr_2550 putative winged helix family two component transcriptional regulator
YP_004782669.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: afr:AFE_2273 MotA/TolQ/ExbB proton channel family protein
YP_004782670.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: afr:AFE_2269 biopolymer transport protein, ExbD/TolR family
YP_004782671.1	PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: afr:AFE_2935 TonB-dependent receptor
YP_004782672.1	PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: afe:Lferr_2552 TonB-dependent receptor
YP_004782673.1	KEGG: afr:AFE_2942 hypothetical protein
YP_004782676.1	KEGG: afr:AFE_2944 cation transporting P-type ATPase; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal
YP_004782677.1	TIGRFAM: Exodeoxyribonuclease V, alpha subunit; KEGG: afr:AFE_2933 exodeoxyribonuclease V, alpha subunit
YP_004782678.1	KEGG: afr:AFE_2932 exodeoxyribonuclease V, beta subunit; TIGRFAM: Exodeoxyribonuclease V, beta subunit; PFAM: DNA helicase, UvrD/REP type
YP_004782679.1	KEGG: afr:AFE_2931 exodeoxyribonuclease V, gamma subunit; TIGRFAM: Exodeoxyribonuclease V, RecC subunit; PFAM: Exodeoxyribonuclease V, RecC subunit
YP_004782680.1	PFAM: Protein of unknown function DUF2063; KEGG: mep:MPQ_1793 hypothetical protein
YP_004782681.1	PFAM: Protein of unknown function DUF692; KEGG: tgr:Tgr7_2641 hypothetical protein
YP_004782683.1	PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: afr:AFE_0238 lipid A biosynthesis lauroyl acyltransferase
YP_004782684.1	KEGG: lch:Lcho_1854 transglutaminase domain-containing protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like
YP_004782685.1	KEGG: lch:Lcho_1403 hypothetical protein
YP_004782686.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: afr:AFE_2929 cyclopropane-fatty-acyl-phospholipid synthase
YP_004782687.1	PFAM: Protein of unknown function DUF190; KEGG: afr:AFE_2927 hypothetical protein
YP_004782688.1	TIGRFAM: Camphor resistance CrcB protein; HAMAP: CrcB-like protein; KEGG: afr:AFE_2926 CrcB protein, putative; PFAM: Camphor resistance CrcB protein
YP_004782689.1	PFAM: Glycosyl transferase, family 39; KEGG: afr:AFE_2925 dolichyl-phosphate-mannose-protein mannosyltransferase family protein
YP_004782690.1	KEGG: axy:AXYL_06058 hypothetical protein
YP_004782691.1	PFAM: Helix-turn-helix type 3; KEGG: mmw:Mmwyl1_3898 helix-turn-helix domain-containing protein
YP_004782692.1	PFAM: Glycosyl transferase, group 1; KEGG: bam:Bamb_0758 glycosyl transferase, group 1
YP_004782693.1	KEGG: dte:Dester_1313 methyltransferase type 11
YP_004782694.1	PFAM: Polysaccharide biosynthesis protein; KEGG: afr:AFE_0076 polysaccharide biosynthesis protein
YP_004782696.1	KEGG: afr:AFE_0071 peptidoglycan-associated lipoprotein, putative; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal
YP_004782697.1	KEGG: afr:AFE_0070 hypothetical protein; TIGRFAM: Tol-Pal system, YbgF; PFAM: Tetratricopeptide TPR-1
YP_004782698.1	PFAM: Radical SAM; KEGG: afr:AFE_0069 radical SAM domain protein
YP_004782699.1	KEGG: afr:AFE_0068 ExsB protein; TIGRFAM: Exoenzyme S synthesis protein B/queuosine synthesis; PFAM: Queuosine synthesis-like
YP_004782700.1	TIGRFAM: Tol-Pal system beta propeller repeat-containing protein, TolB; HAMAP: Tol-Pal system beta propeller repeat-containing protein, TolB; KEGG: afr:AFE_0067 tol-pal system beta propeller repeat protein TolB; PFAM: TolB, N-terminal; WD40-like Beta Propeller
YP_004782701.1	TIGRFAM: Tol-Pal system, TolA; KEGG: afr:AFE_0066 TolA protein
YP_004782702.1	KEGG: afr:AFE_0065 TolR protein; TIGRFAM: Biopolymer transport, TolR; PFAM: Biopolymer transport protein ExbD/TolR
YP_004782703.1	KEGG: afr:AFE_0064 TolQ protein; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel
YP_004782704.1	KEGG: afr:AFE_0063 tol-pal system-associated acyl-CoA thioesterase; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily
YP_004782705.1	SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: afr:AFE_0062 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal
YP_004782706.1	TIGRFAM: Bacterial DNA recombination protein RuvA; HAMAP: Holliday junction ATP-dependent DNA helicase ruvA; KEGG: afr:AFE_0061 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal
YP_004782707.1	TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; HAMAP: Crossover junction endodeoxyribonuclease RuvC; KEGG: afe:Lferr_0061 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC
YP_004782708.1	TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: afr:AFE_0059 hypothetical protein; PFAM: Protein of unknown function DUF28
YP_004782709.1	KEGG: afr:AFE_0058 acyltransferase family protein; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_004782710.1	TIGRFAM: Quinolinate synthetase A; HAMAP: Quinolinate synthase A; KEGG: afe:Lferr_0058 quinolinate synthetase; PFAM: Quinolinate synthetase A
YP_004782711.1	KEGG: afr:AFE_0056 aspartyl-tRNA synthetase; TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain
YP_004782712.1	KEGG: afr:AFE_0055 hypothetical protein; TIGRFAM: Regulatory protein, FmdB, putative; PFAM: Regulatory protein, FmdB, putative
YP_004782713.1	KEGG: afe:Lferr_0055 multiple antibiotic resistance (MarC)-like protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: Multiple antibiotic resistance (MarC)-related
YP_004782714.1	PFAM: Protein of unknown function DUF202; KEGG: hypothetical protein
YP_004782715.1	TIGRFAM: ATP-binding cassette protein, ChvD family; PFAM: ABC transporter-like; KEGG: afr:AFE_0036 putative ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004782716.1	TIGRFAM: Ribosomal protein L34; HAMAP: 50S ribosomal protein L34; KEGG: afr:AFE_0035 50S ribosomal protein L34; PFAM: Ribosomal protein L34
YP_004782717.1	TIGRFAM: Ribonuclease P; HAMAP: Ribonuclease P; KEGG: afr:AFE_0034 ribonuclease P protein component; PFAM: Ribonuclease P
YP_004782718.1	TIGRFAM: Protein of unknown function DUF37; HAMAP: Protein of unknown function DUF37; KEGG: afr:AFE_0033 conserved hypothetical protein TIGR00278; PFAM: Protein of unknown function DUF37
YP_004782719.1	TIGRFAM: Membrane insertion protein, OxaA/YidC, core; Membrane insertion protein, OxoA/YidC, N-terminal; HAMAP: Membrane protein oxaA; KEGG: afr:AFE_0032 inner membrane protein, 60 kDa; PFAM: Membrane insertion protein, OxaA/YidC
YP_004782720.1	TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: afr:AFE_0031 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related
YP_004782721.1	KEGG: afr:AFE_0921 hypothetical protein
YP_004782722.1	KEGG: afr:AFE_0920 metal ion transporter, NRAMP family
YP_004782723.1	PFAM: Protein of unknown function DUF45; KEGG: mca:MCA1894 hypothetical protein
YP_004782724.1	TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: mca:MCA1893 type I restriction-modification system, R subunit; SMART: DEAD-like helicase, N-terminal
YP_004782725.1	KEGG: hypothetical protein
YP_004782726.1	PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: Restriction modification system DNA specificity domain protein
YP_004782727.1	KEGG: dde:Dde_2497 hypothetical protein
YP_004782728.1	KEGG: mca:MCA1888 type I restriction-modification system, M subunit; TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit; PFAM: DNA methylase, adenine-specific
YP_004782729.1	KEGG: mca:MCA1886 hypothetical protein
YP_004782730.1	KEGG: afr:AFE_3235 ABC-2 type transporter, permease protein, NodJ family; TIGRFAM: ABC-2 type transporter, NodJ; PFAM: ABC-2 type transporter
YP_004782731.1	KEGG: afr:AFE_3236 ABC transporter, ATP-binding protein, NodI family; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004782732.1	KEGG: afe:Lferr_2838 hypothetical protein
YP_004782733.1	KEGG: afr:AFE_3238 ferredoxin, putative
YP_004782734.1	KEGG: afr:AFE_3239 COQ7 family protein
YP_004782735.1	KEGG: afr:AFE_3240 Rrf2 family protein; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2
YP_004782736.1	PFAM: Peroxiredoxin, OsmC-like protein; KEGG: afr:AFE_3241 OsmC/Ohr family protein
YP_004782737.1	PFAM: Indole-3-glycerol phosphate synthase; KEGG: afr:AFE_3242 indole-3-glycerol phosphate synthase
YP_004782738.1	TIGRFAM: Anthranilate phosphoribosyl transferase; HAMAP: Anthranilate phosphoribosyl transferase; KEGG: afr:AFE_3243 anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal
YP_004782739.1	KEGG: afr:AFE_3244 para-aminobenzoate synthase glutamine amidotransferase component II; TIGRFAM: Glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I, C-terminal
YP_004782740.1	PFAM: ATPase associated with various cellular activities, AAA-4; KEGG: paa:Paes_2367 putative transcriptional regulator
YP_004782741.1	KEGG: syp:SYNPCC7002_A0406 AbrB family transcriptional regulator; TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted
YP_004782742.1	KEGG: afr:AFE_3245 anthranilate synthase component I; TIGRFAM: Anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal
YP_004782743.1	TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; HAMAP: Phosphoglycolate phosphatase; KEGG: afr:AFE_3246 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase
YP_004782744.1	KEGG: afr:AFE_3247 ribulose-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase
YP_004782745.1	KEGG: afr:AFE_3248 fructose-bisphosphate aldolase, class II; TIGRFAM: Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Ketose-bisphosphate aldolase, class-II; PFAM: Ketose-bisphosphate aldolase, class-II
YP_004782746.1	KEGG: afr:AFE_3249 pyruvate kinase II; TIGRFAM: Pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta
YP_004782747.1	KEGG: afr:AFE_3250 phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase
YP_004782748.1	KEGG: afr:AFE_3251 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
YP_004782749.1	KEGG: afe:Lferr_2853 transketolase; TIGRFAM: Transketolase, bacterial-like; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal
YP_004782750.1	KEGG: afr:AFE_3253 fructose 1,6-bisphosphatase II; TIGRFAM: GlpX; PFAM: GlpX
YP_004782751.1	PFAM: Inositol monophosphatase; KEGG: afr:AFE_3254 inositol monophosphatase family protein
YP_004782752.1	KEGG: afr:AFE_3255 hypothetical protein
YP_004782753.1	manually curated; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; KEGG: afr:AFE_3257 conserved hypothetical protein TIGR00046; PFAM: Ribosomal RNA small subunit methyltransferase E
YP_004782754.1	PFAM: Mg2+ transporter protein, CorA-like; KEGG: mms:mma_0084 Mg2+/Co2+ transporter
YP_004782755.1	TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: afr:AFE_3258 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein
YP_004782756.1	PFAM: RmuC; KEGG: afe:Lferr_2859 hypothetical protein
YP_004782757.1	TIGRFAM: Large-conductance mechanosensitive channel; HAMAP: Large-conductance mechanosensitive channel; KEGG: afr:AFE_3260 large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel; Uncharacterised protein family UPF0547
YP_004782758.1	KEGG: afr:AFE_3261 lipoprotein, putative
YP_004782759.1	PFAM: Acriflavin resistance protein; KEGG: afr:AFE_3262 transporter, AcrB/AcrD/AcrF family
YP_004782760.1	KEGG: afe:Lferr_2863 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004782761.1	PFAM: Outer membrane efflux protein; KEGG: afr:AFE_3265 outer membrane efflux protein
YP_004782762.1	KEGG: amv:ACMV_28260 hypothetical protein
YP_004782763.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: afr:AFE_3172 glyoxalase family protein
YP_004782764.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_2801 oxidoreductase, short-chain dehydrogenase/reductase family
YP_004782765.1	PFAM: GCN5-related N-acetyltransferase; KEGG: chl:Chy400_3543 GCN5-related N-acetyltransferase
YP_004782766.1	KEGG: afr:AFE_2717 hypothetical protein
YP_004782767.1	KEGG: afr:AFE_3267 YaiI/YqxD family protein; HAMAP: Protein of unknown function DUF188; PFAM: Protein of unknown function DUF188
YP_004782768.1	TIGRFAM: Prevent-host-death protein; KEGG: afe:Lferr_2866 prevent-host-death family protein
YP_004782769.1	TIGRFAM: Protein of unknown function DUF132; KEGG: afe:Lferr_2867 nucleic acid-binding protein, contains PIN domain
YP_004782770.1	KEGG: ttu:TERTU_0138 nickel-dependent hydrogenase, b-type cytochrome subunit
YP_004782771.1	PFAM: Cytochrome c prime; KEGG: pzu:PHZ_c1138 putative cytochrome c signal peptide protein
YP_004782772.1	PFAM: Protein of unknown function DUF6, transmembrane; KEGG: ade:Adeh_2262 hypothetical protein
YP_004782773.1	KEGG: afe:Lferr_2871 hypothetical protein
YP_004782774.1	KEGG: afr:AFE_3274 transcriptional regulator OmpR, putative; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region
YP_004782775.1	KEGG: afr:AFE_3275 osmolarity sensor protein EnvZ, putative; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain
YP_004782776.1	KEGG: afr:AFE_3276 hypothetical protein
YP_004782777.1	TIGRFAM: Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; KEGG: afr:AFE_3277 argininosuccinate lyase; PFAM: Fumarate lyase
YP_004782778.1	KEGG: afr:AFE_3278 lipoprotein, putative
YP_004782779.1	KEGG: afr:AFE_3279 diaminopimelate decarboxylase; TIGRFAM: Diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2
YP_004782780.1	KEGG: afr:AFE_2924 glucose-6-phosphate isomerase; HAMAP: Phosphoglucose isomerase (PGI); PFAM: Phosphoglucose isomerase (PGI)
YP_004782781.1	PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: afr:AFE_2923 D-alanyl-D-alanine carboxypeptidase
YP_004782782.1	PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: afr:AFE_2594 glutathione S-transferase
YP_004782783.1	TIGRFAM: Flavoprotein WrbA; HAMAP: Flavoprotein wrbA; KEGG: afr:AFE_0460 TrpR binding protein WrbA; PFAM: Flavodoxin/nitric oxide synthase
YP_004782784.1	PFAM: Helix-turn-helix, HxlR type; KEGG: afr:AFE_0198 transcriptional regulator
YP_004782785.1	PFAM: Lipid/polyisoprenoid-binding, YceI-like; KEGG: afr:AFE_0461 YceI-like family protein
YP_004782786.1	PFAM: Glutaredoxin; KEGG: afr:AFE_2449 hypothetical protein
YP_004782787.1	PFAM: Heavy metal transport/detoxification protein; KEGG: afr:AFE_1862 heavy metal-binding protein, putative
YP_004782788.1	PFAM: Protein of unknown function DUF302; KEGG: afr:AFE_2447 hypothetical protein
YP_004782789.1	KEGG: hna:Hneap_0924 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; Copper ion-binding; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase
YP_004782790.1	PFAM: Ion transport 2; Regulator of K+ conductance, N-terminal; KEGG: afe:Lferr_2537 voltage-gated potassium channel
YP_004782791.1	KEGG: afe:Lferr_2536 hypothetical protein
YP_004782792.1	KEGG: afr:AFE_2921 rare lipoprotein A, putative; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A
YP_004782793.1	PFAM: Rickettsia 17kDa surface antigen; KEGG: afr:AFE_2919 lipoprotein, putative
YP_004782794.1	KEGG: afr:AFE_2918 lipoprotein, putative
YP_004782795.1	PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: afr:AFE_2917 glutamine amidotransferase class-I domain protein
YP_004782796.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; KEGG: tgr:Tgr7_3175 sensory box protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF
YP_004782797.1	KEGG: afo:Afer_1995 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter
YP_004782798.1	PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: nhl:Nhal_2889 ABC-type phosphate/phosphonate transport system periplasmic component
YP_004782799.1	TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; PAS fold-4; KEGG: gur:Gura_1513 stage II sporulation E family protein; SMART: Protein phosphatase 2C-related; PAS
YP_004782800.1	KEGG: afr:AFE_2916 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter
YP_004782801.1	PFAM: Nitrogen regulatory protein PII; KEGG: afr:AFE_2915 nitrogen regulatory protein P-II 2
YP_004782802.1	KEGG: afr:AFE_2914 hypothetical protein
YP_004782803.1	PFAM: Sporulation stage V, protein R; KEGG: afr:AFE_2913 SpoVR family protein
YP_004782804.1	PFAM: Protein of unknown function DUF444; KEGG: afr:AFE_2912 hypothetical protein
YP_004782805.1	KEGG: afr:AFE_2911 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter
YP_004782806.1	KEGG: afr:AFE_2910 hypothetical protein; PFAM: PrkA AAA; PrkA serine kinase; SMART: PrkA AAA
YP_004782808.1	PFAM: Cache; KEGG: slo:Shew_3768 hypothetical protein
YP_004782809.1	KEGG: afr:AFE_2907 transglutaminase-like domain protein; PFAM: Protein of unknown function DUF2126; Bacterial transglutaminase-like, N-terminal; Transglutaminase-like; SMART: Transglutaminase-like
YP_004782810.1	PFAM: Protein of unknown function DUF403, bacteria; KEGG: afr:AFE_2906 hypothetical protein
YP_004782811.1	PFAM: Protein of unknown function DUF404, bacteria N-terminal; Protein of unknown function DUF407; KEGG: afr:AFE_2905 hypothetical protein
YP_004782812.1	PFAM: Proteasome, subunit alpha/beta; KEGG: afr:AFE_2903 hypothetical protein
YP_004782813.1	KEGG: afr:AFE_2902 nitrogen regulation protein NR(II); PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region
YP_004782814.1	TIGRFAM: Signal transduction response regulator, nitrogen regulation NR(I); PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; KEGG: afr:AFE_2901 nitrogen regulation protein NR(I); SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core
YP_004782815.1	KEGG: afr:AFE_2900 hypothetical protein
YP_004782816.1	PFAM: Polyprenyl synthetase; KEGG: afr:AFE_2899 octaprenyl-diphosphate synthase
YP_004782817.1	PFAM: O-antigen ligase-related; KEGG: afr:AFE_2896 O-antigen polymerase family protein
YP_004782818.1	PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: afr:AFE_2895 peptidoglycan synthetase FtsI , putative
YP_004782819.1	KEGG: afe:Lferr_2514 hypothetical protein
YP_004782820.1	KEGG: afe:Lferr_2513 hypothetical protein
YP_004782821.1	KEGG: afr:AFE_2893 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004782822.1	KEGG: afr:AFE_2891 hypothetical protein
YP_004782823.1	KEGG: afr:AFE_2882 uracil-DNA glycosylase family 4 protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like
YP_004782824.1	PFAM: Lipase, GDSL; KEGG: bsa:Bacsa_0892 alpha-L-fucosidase
YP_004782826.1	PFAM: Glycoside hydrolase, family 24; KEGG: xbo:XBJ1_0278 putative rhs accessory genetic element
YP_004782827.1	PFAM: TadE-like; KEGG: reh:H16_A0987 flp pilus assembly protein TadG
YP_004782828.1	PFAM: Type II secretion system protein E; KEGG: hna:Hneap_2309 FHA domain containing protein
YP_004782829.1	PFAM: Type II/III secretion system; KEGG: hna:Hneap_2310 type II and III secretion system protein
YP_004782830.1	TIGRFAM: Pilus assembly, Flp-type CpaB; KEGG: bph:Bphy_4344 Flp pilus assembly protein CpaB
YP_004782832.1	KEGG: hna:Hneap_2313 hypothetical protein
YP_004782833.1	KEGG: swd:Swoo_0753 hypothetical protein
YP_004782835.1	KEGG: saz:Sama_0702 hypothetical protein
YP_004782836.1	KEGG: swd:Swoo_0756 hypothetical protein
YP_004782837.1	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: avi:Avi_7144 OmpA family protein
YP_004782838.1	PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004782839.1	PFAM: Type II secretion system F domain; KEGG: hna:Hneap_2308 type II secretion system F domain protein
YP_004782840.1	PFAM: Type II secretion system F domain; KEGG: reh:H16_A0985 flp pilus assembly protein TadC
YP_004782841.1	PFAM: Protein of unknown function DUF192; KEGG: afr:AFE_2872 hypothetical protein
YP_004782842.1	KEGG: afr:AFE_0414 prevent host death protein
YP_004782843.1	KEGG: tmz:Tmz1t_1573 PIN domain protein
YP_004782844.1	TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: afr:AFE_2856 signal recognition particle protein; SMART: ATPase, AAA+ type, core
YP_004782845.1	TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: afr:AFE_2855 30S ribosomal protein S16; PFAM: Ribosomal protein S16
YP_004782846.1	PFAM: RimM protein; PRC-barrel; manually curated; TIGRFAM: 16S rRNA processing protein RimM; KEGG: afr:AFE_2854 16S rRNA processing protein RimM; HAMAP: 16S rRNA processing protein RimM
YP_004782847.1	TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: afr:AFE_2853 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase
YP_004782848.1	TIGRFAM: Ribosomal protein L19; HAMAP: Ribosomal protein L19; KEGG: afr:AFE_2852 ribosomal protein L19; PFAM: Ribosomal protein L19
YP_004782849.1	KEGG: afe:Lferr_2472 hypothetical protein
YP_004782850.1	TIGRFAM: Tyrosine recombinase XerD; HAMAP: Tyrosine recombinase xerD; KEGG: afr:AFE_2850 tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage
YP_004782851.1	TIGRFAM: Peptidase S1C, Do; PFAM: PDZ/DHR/GLGF; Peptidase S1/S6, chymotrypsin/Hap; KEGG: afr:AFE_2849 serine protease, DO/DeqQ family; SMART: PDZ/DHR/GLGF
YP_004782852.1	KEGG: afr:AFE_2848 thioredoxin, putative; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_004782853.1	KEGG: afe:Lferr_2468 hypothetical protein
YP_004782854.1	TIGRFAM: Excinuclease ABC, A subunit; HAMAP: UvrABC system protein A; KEGG: afr:AFE_2847 excinuclease ABC, A subunit; PFAM: ABC transporter-like
YP_004782855.1	KEGG: afr:AFE_2845 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding
YP_004782856.1	PFAM: DNA methylase, adenine-specific; KEGG: geb:GM18_2872 adenine-specific DNA-methyltransferase
YP_004782857.1	PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: cph:Cpha266_1710 restriction modification system DNA specificity subunit
YP_004782858.1	KEGG: vvy:VV1821 hypothetical protein
YP_004782859.1	KEGG: pca:Pcar_0280 hypothetical protein
YP_004782860.1	PFAM: Protein of unknown function DUF1814; KEGG: pca:Pcar_0281 hypothetical protein
YP_004782861.1	TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: geb:GM18_2869 type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicase, N-terminal
YP_004782862.1	KEGG: afr:AFE_2844 hypothetical protein
YP_004782863.1	PFAM: Protein of unknown function DUF445, transmembrane; KEGG: afr:AFE_2843 hypothetical protein
YP_004782864.1	TIGRFAM: Glutamate racemase; HAMAP: Glutamate racemase; KEGG: afr:AFE_2842 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase
YP_004782865.1	PFAM: ROK; KEGG: afr:AFE_2841 ROK family protein
YP_004782866.1	PFAM: Alpha-amylase/4-alpha-glucanotransferase, prokaryotic; Domain of unknown function DUF1925; Glycoside hydrolase, family 57, core; KEGG: afr:AFE_2840 glycosyl hydrolase, family 57
YP_004782867.1	PFAM: Glycoside hydrolase, family 57, core; KEGG: afr:AFE_2839 glycosyl hydrolase, family 57
YP_004782868.1	TIGRFAM: Glucose-1-phosphate adenylyltransferase; HAMAP: Glucose-1-phosphate adenylyltransferase; KEGG: afr:AFE_2838 glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase
YP_004782869.1	SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM: 1,4-alpha-glucan branching enzyme, core region; KEGG: afe:Lferr_2458 1,4-alpha-glucan branching protein; HAMAP: 1,4-alpha-glucan branching enzyme, core region; PFAM: Alpha-amylase, C-terminal all beta; Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region
YP_004782870.1	KEGG: afr:AFE_2835 hypothetical protein
YP_004782871.1	KEGG: afr:AFE_2834 SPFH/band 7 domain protein; PFAM: Band 7 protein; SMART: Band 7 protein
YP_004782872.1	TIGRFAM: 6-phosphogluconolactonase; KEGG: afr:AFE_2833 6-phosphogluconolactonase
YP_004782873.1	KEGG: afr:AFE_2832 cysteine synthase B; TIGRFAM: Cysteine synthase K/M; Cysteine synthase B; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004782874.1	KEGG: afe:Lferr_2453 hypothetical protein
YP_004782875.1	KEGG: afe:Lferr_2452 hypothetical protein
YP_004782876.1	PFAM: 3'-5' exonuclease, PolB-like; KEGG: afe:Lferr_2451 hypothetical protein
YP_004782877.1	TIGRFAM: 23S rRNA methyltransferase/RumA; HAMAP: 23S rRNA (uracil-5-)-methyltransferase rumA; KEGG: afr:AFE_2828 23S rRNA (uracil-5-)-methyltransferase; PFAM: Methyltransferase type 11; Deoxyribonuclease/rho motif-related TRAM
YP_004782878.1	PFAM: YkuD domain; KEGG: afr:AFE_2827 ErfK/YbiS/YcfS/YnhG family protein
YP_004782879.1	KEGG: afr:AFE_2826 hypothetical protein
YP_004782880.1	PFAM: Glycoside hydrolase, family 3, N-terminal; KEGG: afr:AFE_2825 beta-hexosaminidase
YP_004782881.1	TIGRFAM: Ribosomal protein S6; HAMAP: Ribosomal protein S6, bacterial-like; KEGG: afr:AFE_2824 30S ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like
YP_004782882.1	TIGRFAM: Ribosomal protein S18; HAMAP: 30S ribosomal protein S18; KEGG: afr:AFE_2823 ribosomal protein S18; PFAM: Ribosomal protein S18
YP_004782883.1	PFAM: Protein of unknown function DUF2232, membrane; KEGG: afe:Lferr_2444 hypothetical protein
YP_004782884.1	TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; HAMAP: Ribosomal protein L9, bacteria/chloroplast; KEGG: afr:AFE_2820 50S ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal; Ribosomal protein L9, C-terminal
YP_004782885.1	TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: afr:AFE_2819 replicative DNA helicase; SMART: ATPase, AAA+ type, core
YP_004782886.1	TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: afr:AFE_2818 alanine racemase; PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal
YP_004782887.1	KEGG: afr:AFE_2817 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase, AAA+ type, core
YP_004782888.1	KEGG: afr:AFE_2816 hypothetical protein
YP_004782889.1	PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; KEGG: afr:AFE_2815 Xaa-Pro aminopeptidase
YP_004782890.1	KEGG: afe:Lferr_2437 hypothetical protein
YP_004782891.1	KEGG: afr:AFE_2811 lipoprotein, putative
YP_004782892.1	KEGG: afr:AFE_2053 putative phosphoketolase; HAMAP: phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal
YP_004782893.1	manually curated; KEGG: afe:Lferr_0218 hypothetical protein
YP_004782894.1	PFAM: Protein of unknown function DUF2078, membrane; KEGG: afe:Lferr_0219 hypothetical protein
YP_004782895.1	KEGG: afr:AFE_1709 ISAfe4, tranposase orf1
YP_004782896.1	PFAM: Transposase (putative), IS66 Orf2 like; KEGG: afr:AFE_2938 ISAfe4, transposase orf2
YP_004782897.1	PFAM: Integrase, catalytic core, phage; KEGG: gca:Galf_2491 integrase family protein
YP_004782899.1	KEGG: tde:TDE0384 hypothetical protein
YP_004782900.1	KEGG: bac:BamMC406_6709 hypothetical protein
YP_004782902.1	manually curated; KEGG: hypothetical protein
YP_004782905.1	PFAM: Integrase, N-terminal SAM-like, phage; KEGG: pol:Bpro_4806 phage integrase
YP_004782907.1	PFAM: Protein of unknown function DUF262; KEGG: dly:Dehly_0806 hypothetical protein
YP_004782908.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Protein of unknown function DUF2470; KEGG: tin:Tint_2978 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein
YP_004782909.1	PFAM: Mechanosensitive ion channel MscS; KEGG: afr:AFE_1549 hypothetical protein
YP_004782910.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: tin:Tint_2798 short-chain dehydrogenase/reductase SDR
YP_004782911.1	KEGG: afr:AFE_1582 hypothetical protein
YP_004782912.1	KEGG: afr:AFE_0905 integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein
YP_004782915.1	KEGG: hypothetical protein
YP_004782917.1	KEGG: gpb:HDN1F_07060 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Protein of unknown function DUF1998; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal
YP_004782918.1	KEGG: gpb:HDN1F_07070 superfamily II DNA/RNA helicases, SNF2 family; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal
YP_004782919.1	KEGG: afr:AFE_0085 prevent-host-death family protein
YP_004782920.1	KEGG: afr:AFE_0086 hypothetical protein
YP_004782921.1	KEGG: gpb:HDN1F_07090 hypothetical protein
YP_004782922.1	KEGG: mar:MAE_15010 hypothetical protein
YP_004782923.1	KEGG: syn:sll1563 hypothetical protein
YP_004782924.1	KEGG: nit:NAL212_1258 RNA ligase domain, REL/Rln2
YP_004782925.1	PFAM: Plasmid maintenance system killer; KEGG: afr:AFE_0088 plasmid maintenance system killer protein
YP_004782926.1	TIGRFAM: Addiction module antidote protein, HigA; KEGG: afr:AFE_0089 DNA-binding protein, putative
YP_004782927.1	KEGG: nit:NAL212_1257 hypothetical protein
YP_004782929.1	PFAM: Protein of unknown function DUF6, transmembrane; KEGG: dde:Dde_1146 hypothetical protein
YP_004782930.1	PFAM: DinB; KEGG: tin:Tint_2723 DinB family protein
YP_004782931.1	KEGG: afe:Lferr_0197 hypothetical protein
YP_004782932.1	KEGG: afe:Lferr_0198 hypothetical protein
YP_004782933.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sil:SPO3481 hypothetical protein
YP_004782934.1	PFAM: Protein of unknown function DUF1348; KEGG: aba:Acid345_2217 hypothetical protein
YP_004782935.1	PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pol:Bpro_2654 TetR family transcriptional regulator
YP_004782936.1	KEGG: afr:AFE_2799 transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II; PFAM: AlkA, N-terminal; Ada DNA repair, metal-binding; Helix-turn-helix, AraC type; HhH-GPD domain; SMART: Helix-turn-helix, AraC domain; HhH-GPD domain
YP_004782938.1	KEGG: afr:AFE_2797 hypothetical protein
YP_004782939.1	SMART: HTH transcriptional regulator, ArsR; KEGG: afr:AFE_2796 transcriptional regulator, ArsR family
YP_004782940.1	manually curated; KEGG: bbt:BBta_p0031 hypothetical protein
YP_004782941.1	KEGG: afe:Lferr_0254 TIR (toll-interleukin 1-resistance) domain-containing protein-like protein
YP_004782944.1	PFAM: Transposase IS3/IS911; KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein
YP_004782945.1	KEGG: pna:Pnap_0429 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core
YP_004782947.1	PFAM: Restriction endonuclease, type IV-like, Mrr; DNA topoisomerase, type IA, zn finger; KEGG: afr:AFE_2769 restriction endonuclease, putative
YP_004782949.1	KEGG: slt:Slit_1749 hypothetical protein
YP_004782950.1	PFAM: Integrase, catalytic core, phage; KEGG: ppw:PputW619_3971 integrase family protein
YP_004782951.1	PFAM: Integrase, catalytic core, phage; KEGG: nhl:Nhal_0956 integrase family protein
YP_004782954.1	KEGG: afr:AFE_0865 hypothetical protein
YP_004782958.1	KEGG: vpe:Varpa_2758 hypothetical protein
YP_004782959.1	KEGG: axy:AXYL_02046 helix-turn-helix family protein 5; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004782960.1	KEGG: app:CAP2UW1_0226 XRE family transcriptional regulator; TIGRFAM: putative zinc finger/helix-turn-helix protein, YgiT family; SMART: Helix-turn-helix type 3
YP_004782961.1	KEGG: app:CAP2UW1_0225 hypothetical protein
YP_004782963.1	PFAM: Protein of unknown function DUF1376
YP_004782965.1	KEGG: brh:RBRH_01223 replication protein 15
YP_004782966.1	KEGG: afr:AFE_1566 DNA replication protein DnaC, putative; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004782968.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: gox:GOX2634 conjugal transfer protein TrbN
YP_004782969.1	KEGG: lpa:lpa_00690 IcmL (DotI)
YP_004782970.1	KEGG: cbd:CBUD_0370 IcmK
YP_004782971.1	PFAM: Bacterial conjugation TrbI-like protein; KEGG: lpn:lpg0451 IcmE (DotG)
YP_004782972.1	TIGRFAM: RNA polymerase sigma-70
YP_004782973.1	KEGG: bvi:Bcep1808_7573 hypothetical protein
YP_004782974.1	KEGG: lpa:lpa_00698 hypothetical protein
YP_004782975.1	PFAM: Protein of unknown function DUF433; KEGG: slt:Slit_0677 hypothetical protein
YP_004782976.1	KEGG: slt:Slit_0676 hypothetical protein
YP_004782977.1	KEGG: rme:Rmet_3350 hypothetical protein
YP_004782978.1	KEGG: mfa:Mfla_2624 hypothetical protein
YP_004782979.1	SMART: ATPase, AAA+ type, core; KEGG: gsu:GSU0763 helicase
YP_004782981.1	KEGG: mea:Mex_2p0509 hypothetical protein
YP_004782982.1	PFAM: Domain of unknown function DUF1738; KEGG: afe:Lferr_0235 hypothetical protein
YP_004782985.1	KEGG: cbs:COXBURSA331_A1817 IcmP protein
YP_004782986.1	KEGG: mpt:Mpe_B0057 hypothetical protein
YP_004782987.1	KEGG: tkm:TK90_0873 transcriptional regulator, LysR family; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR
YP_004782988.1	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; KEGG: hna:Hneap_0212 NADH dehydrogenase (quinone)
YP_004782989.1	KEGG: hna:Hneap_0211 protein of unknown function DUF2309; HAMAP: UPF0753 protein; PFAM: Protein of unknown function DUF2309
YP_004782990.1	KEGG: afr:AFE_1659 hypothetical protein
YP_004782991.1	KEGG: mep:MPQ_2045 hypothetical protein
YP_004782992.1	KEGG: syp:SYNPCC7002_A2097 dihydroorotase
YP_004782994.1	KEGG: gvi:glr2761 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004782995.1	PFAM: Iron sulphur domain-containing, CDGSH-type; KEGG: nde:NIDE0017 hypothetical protein
YP_004782996.1	PFAM: Lipid/polyisoprenoid-binding, YceI-like; KEGG: afr:AFE_0461 YceI-like family protein
YP_004782997.1	KEGG: mme:Marme_3300 hypothetical protein
YP_004782998.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fri:FraEuI1c_6011 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004782999.1	KEGG: rah:Rahaq_4843 carboxylyase
YP_004783000.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: tin:Tint_2563 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted
YP_004783002.1	PFAM: Transposase, Rhodopirellula-type; KEGG: eba:ebA5952 hypothetical protein
YP_004783003.1	PFAM: Transposase, IS116/IS110/IS902; KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein
YP_004783004.1	KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein
YP_004783005.1	PFAM: Protein of unknown function DUF481; KEGG: afr:AFE_2054 hypothetical protein
YP_004783006.1	TIGRFAM: Prevent-host-death protein; KEGG: mci:Mesci_2093 prevent-host-death family protein
YP_004783007.1	PFAM: PilT protein, N-terminal; KEGG: mag:amb1706 hypothetical protein
YP_004783008.1	KEGG: afr:AFE_2428 heavy metal efflux system protein, putative
YP_004783009.1	KEGG: afr:AFE_3146 rusticyanin; TIGRFAM: Rusticyanin; PFAM: Blue (type 1) copper domain
YP_004783010.1	KEGG: afr:AFE_2495 hypothetical protein
YP_004783011.1	KEGG: afr:AFE_2494 hypothetical protein
YP_004783013.1	KEGG: afr:AFE_2498 hypothetical protein
YP_004783014.1	PFAM: Transposase, IS4-like; KEGG: eba:p2A213 transposase
YP_004783015.1	KEGG: ajs:Ajs_1976 transposase IS116/IS110/IS902 family protein
YP_004783016.1	PFAM: Plasmid pRiA4b ORF-3-like; KEGG: bps:BPSS2075 hypothetical protein
YP_004783017.1	PFAM: GCN5-related N-acetyltransferase; KEGG: afr:AFE_2467 acetyltransferase, GNAT family
YP_004783018.1	KEGG: afe:Lferr_0754 periplasmic solute-binding protein
YP_004783019.1	KEGG: afe:Lferr_0157 natural resistance-associated macrophage protein
YP_004783020.1	KEGG: afe:Lferr_0156 hypothetical protein
YP_004783021.1	PFAM: Carbohydrate-selective porin OprB; KEGG: afr:AFE_2250 carbohydrate-selective porin, OprB family
YP_004783022.1	PFAM: MgtC/SapB transporter; KEGG: afe:Lferr_0155 MgtC/SapB transporter
YP_004783023.1	TIGRFAM: Acyl carrier protein (ACP); HAMAP: Acyl carrier protein (ACP); KEGG: afr:AFE_1909 acyl carrier protein; PFAM: Phosphopantetheine-binding
YP_004783024.1	TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: afr:AFE_2421 Cd(II)/Pb(II)-responsive transcriptional regulator; SMART: HTH transcriptional regulator, MerR
YP_004783025.1	KEGG: afr:AFE_2420 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein
YP_004783026.1	KEGG: afr:AFE_2424 cation efflux permease, putative; manually curated; PFAM: Cation efflux protein
YP_004783027.1	PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: afe:Lferr_0188 class V aminotransferase
YP_004783028.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afe:Lferr_0195 FAD-dependent pyridine nucleotide-disulfide oxidoreductase
YP_004783029.1	PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: afe:Lferr_0200 TPR repeat-containing protein
YP_004783030.1	KEGG: afr:AFE_2463 hypothetical protein
YP_004783032.1	PFAM: Outer membrane efflux protein; KEGG: afe:Lferr_0170 outer membrane efflux protein
YP_004783033.1	KEGG: afr:AFE_2433 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004783034.1	KEGG: afe:Lferr_0172 CzcA family heavy metal efflux pump; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein
YP_004783035.1	KEGG: afe:Lferr_0173 cytochrome b561
YP_004783036.1	KEGG: afe:Lferr_0174 hypothetical protein
YP_004783037.1	KEGG: afe:Lferr_2056 hypothetical protein
YP_004783039.1	KEGG: ade:Adeh_0726 hypothetical protein
YP_004783043.1	KEGG: xcv:XCVd0030 putative secreted protein
YP_004783047.1	KEGG: rme:Rmet_2827 putative TraY/DotA-like type IV secretion system protein
YP_004783049.1	PFAM: Transposase, IS4-like; KEGG: eba:p2A221 transposase
YP_004783050.1	PFAM: Transposase, IS4-like; KEGG: eba:p2A221 transposase
YP_004783051.1	KEGG: tbd:Tbd_1686 putative ATP-dependent exoDNAse (exonuclease V) alpha subunit; TIGRFAM: Conjugative relaxase region, N-terminal; PFAM: TrwC relaxase
YP_004783053.1	KEGG: dba:Dbac_1053 SMC domain protein
YP_004783054.1	PFAM: Metallophosphoesterase; KEGG: scl:sce7166 DNA repair exonuclease family protein
YP_004783055.1	KEGG: tmz:Tmz1t_0957 excision promoter, Xis; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: HTH transcriptional regulator, MerR
YP_004783056.1	KEGG: gpb:HDN1F_22900 helicase, C-terminal domain; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal
YP_004783057.1	KEGG: gpb:HDN1F_22910 hypothetical protein
YP_004783058.1	PFAM: DNA methylase N-4/N-6; KEGG: dac:Daci_4205 DNA methylase N-4/N-6 domain-containing protein
YP_004783059.1	PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: gpb:HDN1F_22930 type III restriction enzyme, res subunit
YP_004783061.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: psa:PST_3126 GGDEF domain-containing protein; SMART: Diguanylate cyclase, predicted
YP_004783062.1	KEGG: lhk:LHK_02469 hypothetical protein; PFAM: Phage P4 alpha, zinc-binding; SMART: Phage P4 alpha, zinc-binding
YP_004783065.1	PFAM: StbA; KEGG: mea:Mex_2p0044 hypothetical protein
YP_004783068.1	KEGG: amv:ACMV_28150 hypothetical protein
YP_004783069.1	KEGG: afr:AFE_1243 hypothetical protein
YP_004783070.1	PFAM: Rickettsia 17kDa surface antigen; KEGG: afr:AFE_2919 lipoprotein, putative
YP_004783073.1	KEGG: cbs:COXBURSA331_A1833 Dot/Icm secretion system ATPase DotB; PFAM: Type II secretion system protein E; SMART: ATPase, AAA+ type, core
YP_004783074.1	KEGG: bvi:Bcep1808_7636 hypothetical protein
YP_004783075.1	KEGG: lpc:LPC_0463 lipoprotein DotD
YP_004783076.1	KEGG: afr:AFE_2766 ribose-phosphate pyrophosphokinase; TIGRFAM: Phosphoribosyl pyrophosphokinase; PFAM: Phosphoribosyltransferase
YP_004783077.1	TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: afr:AFE_2764 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal
YP_004783078.1	KEGG: afr:AFE_2763 outer membrane lipoprotein LolB, putative; TIGRFAM: Outer membrane lipoprotein LolB; PFAM: Outer membrane lipoprotein LolB
YP_004783079.1	KEGG: afr:AFE_2762 TPR domain protein
YP_004783080.1	PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal; manually curated; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; KEGG: afr:AFE_2761 glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase
YP_004783081.1	TIGRFAM: Peptide chain release factor 1; HAMAP: Peptide chain release factor 1; KEGG: afr:AFE_2760 peptide chain release factor 1; PFAM: Class I peptide chain release factor; Peptide chain release factor
YP_004783082.1	KEGG: afr:AFE_2759 modification methylase, HemK family; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: Methyltransferase small
YP_004783083.1	TIGRFAM: DNA glycosylase/AP lyase; HAMAP: Formamidopyrimidine-DNA glycosylase; KEGG: afr:AFE_2758 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding
YP_004783084.1	PFAM: GTP-binding protein, HSR1-related; KEGG: afr:AFE_2756 hypothetical protein
YP_004783085.1	PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: afr:AFE_2757 iron-sulfur cluster-binding protein
YP_004783086.1	TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; HAMAP: Coenzyme A biosynthesis protein; KEGG: afr:AFE_2755 pantetheine-phosphate adenylyltransferase; PFAM: Cytidylyltransferase
YP_004783087.1	KEGG: afr:AFE_2754 methyltransferase, putative; TIGRFAM: Conserved hypothetical protein CHP00095; PFAM: Protein of unknown function methylase putative
YP_004783088.1	TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: afe:Lferr_2373 signal recognition particle-docking protein FtsY; SMART: ATPase, AAA+ type, core
YP_004783089.1	TIGRFAM: Cell division ATP-binding protein FtsE; PFAM: ABC transporter-like; KEGG: afr:AFE_2752 cell division ATP-binding protein FtsE; SMART: ATPase, AAA+ type, core
YP_004783090.1	PFAM: Protein of unknown function DUF214, permase predicted; KEGG: afr:AFE_2751 cell division protein FtsX, putative
YP_004783091.1	KEGG: afr:AFE_2750 RNA polymerase sigma-32 factor; TIGRFAM: RNA polymerase sigma factor RpoH, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4
YP_004783092.1	KEGG: afr:AFE_2749 hypothetical protein
YP_004783093.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Heat shock protein HslU; KEGG: afr:AFE_2748 heat shock protein HslVU, ATPase subunit HslU; HAMAP: ATP-dependent hsl protease ATP-binding subunit hslU; PFAM: ATPase associated with various cellular activities, AAA-2; Clp ATPase, C-terminal
YP_004783094.1	TIGRFAM: ATP-dependent protease HslVU, peptidase subunit; HAMAP: ATP-dependent protease hslV; KEGG: afe:Lferr_2367 ATP-dependent protease peptidase subunit; PFAM: Proteasome, subunit alpha/beta
YP_004783095.1	KEGG: afr:AFE_2746 tyrosine recombinase XerC; HAMAP: Tyrosine recombinase xerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage
YP_004783096.1	PFAM: Protein of unknown function DUF484; KEGG: afr:AFE_2745 hypothetical protein
YP_004783097.1	KEGG: afr:AFE_2744 hypothetical protein
YP_004783098.1	TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: afe:Lferr_2363 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase
YP_004783099.1	PFAM: Phosphate-selective porin O/P; KEGG: afr:AFE_2741 major outer membrane protein 40
YP_004783100.1	KEGG: afe:Lferr_2361 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal
YP_004783101.1	PFAM: Methyltransferase type 11; KEGG: afr:AFE_2739 phosphatidylethanolamine N-methyltransferase, putative
YP_004783102.1	KEGG: afr:AFE_2738 ApaG protein; HAMAP: Protein ApaG; PFAM: ApaG
YP_004783103.1	PFAM: RNA-binding, CRM domain; KEGG: afr:AFE_2737 hypothetical protein
YP_004783104.1	KEGG: afr:AFE_2736 ribosomal RNA large subunit methyltransferase J; HAMAP: Ribosomal RNA large subunit methyltransferase E; PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ
YP_004783105.1	TIGRFAM: Hybrid cluster protein; HAMAP: Hybrid cluster protein; KEGG: afr:AFE_1657 hydroxylamine reductase; PFAM: Prismane
YP_004783106.1	PFAM: Oxidoreductase FAD-binding region; Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; KEGG: afr:AFE_1656 ferredoxin/oxidoreductase, FAD/NAD-binding
YP_004783107.1	PFAM: FIST C domain; KEGG: mep:MPQ_1799 hypothetical protein
YP_004783108.1	TIGRFAM: Endonuclease III/Nth; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: afr:AFE_2682 endonuclease III; SMART: HhH-GPD domain
YP_004783109.1	KEGG: afr:AFE_2680 hypothetical protein
YP_004783110.1	PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: afr:AFE_2679 metallo-beta-lactamase family protein
YP_004783111.1	TIGRFAM: Glycogen/starch synthases, ADP-glucose type; HAMAP: Glycogen/starch synthases, ADP-glucose type; KEGG: afr:AFE_2678 glycogen synthase; PFAM: Starch synthase catalytic region; Glycosyl transferase, group 1
YP_004783112.1	KEGG: afr:AFE_2676 hypothetical protein
YP_004783113.1	PFAM: Protein of unknown function DUF1841; KEGG: afr:AFE_2675 hypothetical protein
YP_004783114.1	PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; Peptidase M3B, oligopeptidase F, N-terminal; KEGG: afr:AFE_2674 oligoendopeptidase F, putative
YP_004783115.1	TIGRFAM: Fumarate hydratase, class II; HAMAP: Fumarate hydratase class II; KEGG: afr:AFE_2673 fumarate hydratase, class II; PFAM: Fumarate lyase; Fumarase C, C-terminal
YP_004783116.1	PFAM: DAHP synthetase I/KDSA; KEGG: afr:AFE_2671 phospho-2-dehydro-3-deoxyheptonate aldolase, putative
YP_004783117.1	TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; HAMAP: Methionyl-tRNA synthetase; KEGG: afr:AFE_2672 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding region
YP_004783118.1	TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: afr:AFE_2670 50S ribosomal protein L28; PFAM: Ribosomal protein L28
YP_004783119.1	TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: afr:AFE_2669 50S ribosomal protein L33; PFAM: Ribosomal protein L33
YP_004783120.1	TIGRFAM: Negative regulator of class I heat shock protein; HAMAP: Negative regulator of class I heat shock protein; KEGG: afr:AFE_2667 heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein
YP_004783121.1	KEGG: afr:AFE_2666 co-chaperone GrpE; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor
YP_004783122.1	TIGRFAM: Chaperone DnaK; HAMAP: Chaperone DnaK; KEGG: afr:AFE_2665 chaperone protein DnaK; PFAM: Heat shock protein 70
YP_004783123.1	SMART: Heat shock protein DnaJ, N-terminal; TIGRFAM: Chaperone DnaJ; KEGG: afr:AFE_2664 chaperone protein DnaJ; HAMAP: Chaperone protein dnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich region
YP_004783124.1	TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; HAMAP: Dihydrodipicolinate reductase; KEGG: afr:AFE_2663 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase
YP_004783125.1	PFAM: Antibiotic biosynthesis monooxygenase; KEGG: afr:AFE_2662 antibiotic biosynthesis monooxygenase family protein
YP_004783126.1	PFAM: ATPase-like, ParA/MinD; KEGG: afr:AFE_2661 Mrp protein
YP_004783127.1	KEGG: afr:AFE_2660 deoxycytidine triphosphate deaminase; TIGRFAM: Deoxycytidine triphosphate deaminase; HAMAP: Deoxycytidine triphosphate deaminase
YP_004783128.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; KEGG: dba:Dbac_3337 NADH:flavin oxidoreductase/NADH oxidase
YP_004783129.1	PFAM: Amino acid permease-associated region; KEGG: afr:AFE_2659 amino acid permease family protein
YP_004783130.1	KEGG: sfr:Sfri_2035 hypothetical protein
YP_004783131.1	PFAM: Major intrinsic protein; KEGG: cte:CT1472 major intrinsic protein
YP_004783132.1	KEGG: xac:XACa0008 hypothetical protein
YP_004783133.1	KEGG: afr:AFE_1624 hypothetical protein
YP_004783134.1	KEGG: afr:AFE_2811 lipoprotein, putative
YP_004783135.1	TIGRFAM: Trehalose synthase/alpha-amylase, N-terminal; PFAM: Glycosyl hydrolase, family 13, catalytic region; KEGG: nhl:Nhal_2491 trehalose synthase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region
YP_004783136.1	TIGRFAM: Glycogen debranching enzyme GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; KEGG: dak:DaAHT2_0475 glycogen debranching enzyme GlgX; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region
YP_004783137.1	TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; PFAM: Glycosyl hydrolase, family 13, catalytic region; Glycoside hydrolase, family 13, N-terminal; KEGG: nmu:Nmul_A1403 alpha amylase, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region
YP_004783138.1	SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM: Malto-oligosyltrehalose synthase; Glycoside hydrolase, family 77; KEGG: nmu:Nmul_A1402 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; PFAM: Glycoside hydrolase, family 77; Glycosyl hydrolase, family 13, catalytic region
YP_004783139.1	KEGG: afe:Lferr_2071 hypothetical protein
YP_004783141.1	PFAM: Cytochrome c1; KEGG: afr:AFE_3111 ubiquinol--cytochrome c reductase, cytochrome c1 subunit
YP_004783142.1	PFAM: Cytochrome b/b6, N-terminal; Cytochrome b/b6, C-terminal; KEGG: afr:AFE_3110 ubiquinol--cytochrome c reductase, cytochrome b subunit
YP_004783143.1	KEGG: afr:AFE_3109 ubiquinol--cytochrome c reductase, iron-sulfur subunit; TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; Twin-arginine translocation pathway, signal sequence; PFAM: Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; Rieske [2Fe-2S] iron-sulphur domain
YP_004783144.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_3108 oxidoreductase, short-chain dehydrogenase/reductase family
YP_004783145.1	PFAM: Cytochrome c, class I; KEGG: afe:Lferr_2705 cytochrome c class I
YP_004783148.1	KEGG: afr:AFE_0956 metallo-beta-lactamase family protein
YP_004783149.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_0699 sulfur assimilation transcriptional regulator, LysR family
YP_004783150.1	KEGG: afr:AFE_0419 transaldolase; TIGRFAM: Transaldolase subfamily; PFAM: Transaldolase
YP_004783151.1	KEGG: afr:AFE_0420 enoyl-(acyl-carrier-protein) reductase
YP_004783152.1	KEGG: afr:AFE_0421 membrane-bound lytic murein transglycosylase D; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup
YP_004783153.1	KEGG: afr:AFE_0422 glutamyl-tRNA synthetase; TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain
YP_004783154.1	KEGG: afr:AFE_0423 aconitate hydratase; TIGRFAM: Aconitase, putative; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel
YP_004783155.1	KEGG: afe:Lferr_0586 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: Isocitrate dehydrogenase NADP-dependent, prokaryotic; PFAM: Isocitrate/isopropylmalate dehydrogenase
YP_004783156.1	TIGRFAM: Succinyl-CoA synthetase, beta subunit; HAMAP: Succinyl-CoA ligase [ADP-forming] subunit beta; KEGG: afr:AFE_0425 succinyl-CoA synthase, beta subunit; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase
YP_004783157.1	KEGG: afr:AFE_0426 hypothetical protein
YP_004783158.1	KEGG: afr:AFE_0427 succinyl-CoA synthetase, alpha subunit; TIGRFAM: Succinyl-CoA ligase, alpha subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding
YP_004783159.1	KEGG: afr:AFE_0428 glutamine-dependent NAD+ synthetase; TIGRFAM: NAD+ synthase; PFAM: NAD+ synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_004783160.1	PFAM: Nitrogen regulatory protein PII; KEGG: afr:AFE_0429 nitrogen regulatory protein P-II 1
YP_004783161.1	TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: afr:AFE_0430 competence lipoprotein ComL, putative
YP_004783162.1	TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: afr:AFE_0431 ribosomal large subunit pseudouridine synthase D; SMART: RNA-binding S4
YP_004783163.1	KEGG: afe:Lferr_0594 hypothetical protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase
YP_004783164.1	KEGG: afr:AFE_0433 dioxygenase, ARD/ARD' family; HAMAP: Acireductone dioxygenase; PFAM: Acireductone dioxygenase, ARD
YP_004783165.1	PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; KEGG: afr:AFE_0434 ribulose bisphosphate carboxylase, large subunit 2
YP_004783166.1	PFAM: Haloacid dehalogenase-like hydrolase; KEGG: afe:Lferr_0597 haloacid dehalogenase domain-containing protein hydrolase
YP_004783167.1	TIGRFAM: Methylthioribulose-1-phosphate dehydratase; HAMAP: Methylthioribulose-1-phosphate dehydratase; KEGG: afr:AFE_0436 aldolase, class II; PFAM: Class II aldolase/adducin, N-terminal
YP_004783168.1	PFAM: Amino acid-binding ACT; KEGG: afr:AFE_0437 ACT domain protein
YP_004783169.1	TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: afr:AFE_0438 polypeptide deformylase; PFAM: Formylmethionine deformylase
YP_004783170.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: afr:AFE_0768 MotA/TolQ/ExbB proton channel family protein
YP_004783171.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: afr:AFE_0769 biopolymer transport protein, ExbD/TolR family
YP_004783172.1	TIGRFAM: TonB, C-terminal; KEGG: afe:Lferr_0913 TonB family protein
YP_004783173.1	PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: afr:AFE_0771 cytosine/purines/uracil/thiamine/allantoin permease family protein
YP_004783174.1	PFAM: Amidohydrolase 1; KEGG: afr:AFE_0772 guanine deaminase, putative
YP_004783175.1	TIGRFAM: Adenosine deaminase; HAMAP: Adenosine deaminase; KEGG: afr:AFE_0773 adenosine deaminase; PFAM: Adenosine/AMP deaminase
YP_004783176.1	PFAM: Purine nucleoside permease; KEGG: afe:Lferr_0917 purine nucleoside permease-like protein
YP_004783177.1	PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; KEGG: afr:AFE_0775 xanthine dehydrogenase, molybdenum-binding subunit, putative
YP_004783178.1	PFAM: [2Fe-2S]-binding; Ferredoxin; KEGG: afr:AFE_0776 xanthine dehydrogenase, iron-sulfur binding subunit, putative
YP_004783179.1	PFAM: Molybdopterin dehydrogenase, FAD-binding; KEGG: afr:AFE_0777 xanthine dehydrogenase, FAD-binding protein, putative
YP_004783180.1	KEGG: afr:AFE_0778 hypothetical protein
YP_004783181.1	KEGG: afr:AFE_0779 cyanuric acid amidohydrolase; TIGRFAM: Amidohydrolase ring-opening, AtzD/TrzD; PFAM: Amidohydrolase ring-opening, AtzD/TrzD
YP_004783182.1	PFAM: XdhC- CoxI; KEGG: afr:AFE_0780 xanthine dehydrogenase accessory factor, putative
YP_004783183.1	KEGG: afr:AFE_0781 hypothetical protein
YP_004783184.1	KEGG: afr:AFE_0782 amidohydrolase, AtzE family; TIGRFAM: Amidohydrolase, AtzE type; PFAM: Amidase
YP_004783185.1	KEGG: afr:AFE_0783 hypothetical protein
YP_004783186.1	KEGG: afr:AFE_0784 hypothetical protein
YP_004783187.1	KEGG: afr:AFE_0785 gamma-glutamyltranspeptidase; TIGRFAM: Gamma-glutamyltranspeptidase; PFAM: Gamma-glutamyltranspeptidase
YP_004783188.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_0761 transcriptional regulator, LysR family
YP_004783189.1	PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: afr:AFE_0763 TonB-dependent receptor, putative
YP_004783190.1	PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: mse:Msed_1135 permease for cytosine/purine, uracil, thiamine, allantoin
YP_004783191.1	KEGG: gau:GAU_1451 cytidine deaminase; TIGRFAM: Cytidine deaminase, homotetrameric; PFAM: CMP/dCMP deaminase, zinc-binding
YP_004783192.1	KEGG: shl:Shal_1632 purine phosphorylase family 1
YP_004783193.1	PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: afr:AFE_3229 TonB-dependent receptor
YP_004783194.1	manually curated
YP_004783195.1	PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: afr:AFE_3230 hypothetical protein
YP_004783196.1	PFAM: DNA methylase, adenine-specific; KEGG: tcx:Tcr_0332 N-6 DNA methylase
YP_004783197.1	PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: rba:RB11377 polypeptide HsdS
YP_004783198.1	KEGG: axy:AXYL_03767 hypothetical protein
YP_004783199.1	KEGG: cbt:CLH_2146 hypothetical protein
YP_004783201.1	KEGG: hip:CGSHiEE_05075 hypothetical protein
YP_004783202.1	PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: aeh:Mlg_1123 death-on-curing protein
YP_004783203.1	TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicase, N-terminal
YP_004783204.1	KEGG: xac:XACb0032 hypothetical protein
YP_004783205.1	KEGG: alv:Alvin_3091 hypothetical protein
YP_004783206.1	KEGG: afr:AFE_0443 hypothetical protein
YP_004783207.1	KEGG: afr:AFE_0444 hypothetical protein
YP_004783208.1	KEGG: afr:AFE_0445 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; PFAM: Nucleotidyl transferase
YP_004783209.1	PFAM: Protein of unknown function DUF502; KEGG: afr:AFE_0446 hypothetical protein
YP_004783210.1	KEGG: afr:AFE_0447 sigma-54 dependent DNA-binding response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core
YP_004783211.1	KEGG: afr:AFE_0448 lipoprotein, putative
YP_004783212.1	KEGG: afr:AFE_0449 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region
YP_004783213.1	KEGG: afr:AFE_0450 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC protein, N-terminal
YP_004783214.1	KEGG: afr:AFE_0451 ATP-NAD kinase; HAMAP: inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD/AcoX kinase
YP_004783215.1	TIGRFAM: Bordetella pertussis Bvg accessory factor; HAMAP: Type III pantothenate kinase; KEGG: afr:AFE_0452 transcriptional activator, putative, Baf family; PFAM: Bordetella pertussis Bvg accessory factor
YP_004783216.1	KEGG: afe:Lferr_0614 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase
YP_004783217.1	TIGRFAM: Gamma-glutamyl phosphate reductase GPR; HAMAP: Glutamate-5-semialdehyde dehydrogenase; KEGG: afr:AFE_0454 gamma-glutamyl phosphate reductase; PFAM: Aldehyde dehydrogenase
YP_004783218.1	PFAM: TnsA endonuclease, N-terminal; KEGG: afe:Lferr_0222 TnsA endonuclease
YP_004783219.1	PFAM: Integrase, catalytic core; KEGG: afe:Lferr_0221 Tn7-like transposition protein B
YP_004783220.1	KEGG: rfr:Rfer_4034 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: Glucose-6-phosphate dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase
YP_004783221.1	KEGG: hna:Hneap_0924 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; Copper ion-binding; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase
YP_004783222.1	PFAM: Protein of unknown function DUF302; KEGG: afr:AFE_2447 hypothetical protein
YP_004783223.1	PFAM: Heavy metal transport/detoxification protein; KEGG: afr:AFE_2448 heavy metal-binding protein, putative
YP_004783224.1	PFAM: Glutaredoxin; KEGG: afr:AFE_2449 hypothetical protein
YP_004783225.1	KEGG: dge:Dgeo_2559 hypothetical protein
YP_004783226.1	KEGG: neu:NE0744 hypothetical protein
YP_004783227.1	KEGG: mmi:MMAR_2604 hypothetical protein
YP_004783228.1	PFAM: Resolvase, N-terminal; KEGG: gme:Gmet_3142 resolvase-like protein
YP_004783229.1	PFAM: Transposase, Tn3; KEGG: adn:Alide_4602 transposase Tn3 family protein
YP_004783231.1	KEGG: afr:AFE_0698 S-formylglutathione hydrolase; TIGRFAM: S-formylglutathione hydrolase; PFAM: Putative esterase
YP_004783232.1	KEGG: afr:AFE_0697 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like
YP_004783233.1	KEGG: afr:AFE_0696 glutathione-dependent formaldehyde-activating enzyme; TIGRFAM: S-(hydroxymethyl)glutathione synthase; PFAM: Glutathione-dependent formaldehyde-activating, GFA
YP_004783234.1	KEGG: afe:Lferr_0842 fis family sigma-54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core
YP_004783235.1	PFAM: Protein of unknown function DUF2442; KEGG: gbm:Gbem_0416 hypothetical protein
YP_004783236.1	manually curated; KEGG: aaa:Acav_1435 hypothetical protein
YP_004783237.1	KEGG: aaa:Acav_1436 hypothetical protein; PFAM: Protein of unknown function DUF955; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004783238.1	KEGG: bpy:Bphyt_0239 hypothetical protein
YP_004783239.1	KEGG: bvi:Bcep1808_7631 hypothetical protein
YP_004783241.1	PFAM: AntA/AntB antirepressor; KEGG: btr:Btr_0954 hypothetical protein
YP_004783243.1	PFAM: TRAG protein; KEGG: hna:Hneap_1649 TraG family protein
YP_004783244.1	PFAM: HipA-like, N-terminal; HipA-like, C-terminal; KEGG: rah:Rahaq_3819 HipA domain protein
YP_004783245.1	KEGG: gsu:GSU0959 hypothetical protein
YP_004783246.1	KEGG: pat:Patl_2748 hypothetical protein
YP_004783247.1	KEGG: afr:AFE_1752 hypothetical protein
YP_004783248.1	PFAM: DNA-repair protein, UmuC-like; KEGG: afr:AFE_1751 UmuC protein
YP_004783249.1	PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: afr:AFE_1750 UmuD protein
YP_004783251.1	PFAM: Protein of unknown function DUF159; KEGG: afr:AFE_1749 hypothetical protein
YP_004783252.1	KEGG: nha:Nham_2841 helicase RecD/TraA; TIGRFAM: DNA helicase, RecD/TraA type; SMART: ATPase, AAA+ type, core; Helix-hairpin-helix DNA-binding motif, class 1
YP_004783253.1	KEGG: cpc:Cpar_0666 hypothetical protein
YP_004783254.1	manually curated; PFAM: Histone-like bacterial DNA-binding protein; KEGG: afr:AFE_1070 DNA-binding protein, HU family; SMART: Histone-like bacterial DNA-binding protein
YP_004783256.1	PFAM: Dynein light chain-related; KEGG: afr:AFE_2578 roadblock/LC7 domain protein
YP_004783257.1	KEGG: cts:Ctha_0396 hypothetical protein
YP_004783258.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: afe:Lferr_1405 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted
YP_004783259.1	PFAM: Nitrogen regulatory protein PII; KEGG: cti:RALTA_A0736 regulatory protein (p-ii) for nitrogen assimilation by glutamine synthetase (ATase)
YP_004783260.1	PFAM: Dynein light chain-related; KEGG: afr:AFE_2578 roadblock/LC7 domain protein
YP_004783261.1	KEGG: gmc:GY4MC1_1878 methyl-accepting chemotaxis sensory transducer
YP_004783262.1	KEGG: afr:AFE_1072 hypothetical protein; manually curated; PFAM: RES
YP_004783263.1	KEGG: afr:AFE_1071 hypothetical protein
YP_004783265.1	manually curated
YP_004783267.1	KEGG: afr:AFE_3189 hypothetical protein
YP_004783268.1	KEGG: afe:Lferr_1541 hypothetical protein
YP_004783271.1	KEGG: cmi:CMM_1110 hypothetical protein
YP_004783272.1	KEGG: ava:Ava_C0048 hypothetical protein
YP_004783273.1	KEGG: tmz:Tmz1t_2370 hypothetical protein
YP_004783275.1	KEGG: pao:Pat9b_2156 hypothetical protein
YP_004783276.1	KEGG: afr:AFE_1584 DNA-binding protein HU family protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein
YP_004783277.1	PFAM: Histone-like bacterial DNA-binding protein
YP_004783278.1	PFAM: TnsA endonuclease, N-terminal; KEGG: afe:Lferr_0222 TnsA endonuclease
YP_004783279.1	KEGG: afe:Lferr_0221 Tn7-like transposition protein B
YP_004783280.1	PFAM: Resolvase, N-terminal; KEGG: sus:Acid_6125 resolvase domain-containing protein
YP_004783281.1	PFAM: Plasmid pRiA4b ORF-3-like; KEGG: syp:SYNPCC7002_G0040 hypothetical protein
YP_004783282.1	KEGG: syp:SYNPCC7002_G0041 hypothetical protein
YP_004783283.1	PFAM: Cytochrome c assembly protein, transmembrane region; KEGG: afr:AFE_0545 thiol:disulfide interchange protein DsbD
YP_004783284.1	PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: pat:Patl_0274 redoxin
YP_004783285.1	KEGG: mmb:Mmol_1963 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004783286.1	PFAM: Protein of unknown function DUF302; KEGG: dsh:Dshi_2075 hypothetical protein
YP_004783287.1	PFAM: Transposase IS3/IS911; KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein
YP_004783288.1	KEGG: pna:Pnap_0429 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core
YP_004783289.1	KEGG: bgl:bglu_2g14420 disulfide isomerase/thiol-disulfide oxidase
YP_004783290.1	KEGG: afr:AFE_2508 hypothetical protein
YP_004783291.1	PFAM: Protein of unknown function DUF2063; KEGG: nha:Nham_4648 hypothetical protein
YP_004783292.1	PFAM: Protein of unknown function DUF692; KEGG: pol:Bpro_4790 hypothetical protein
YP_004783293.1	PFAM: Protein of unknown function DUF2282, transmembrane; KEGG: ppr:PBPRA3515 putative signal peptide protein
YP_004783294.1	PFAM: DoxX; KEGG: reh:H16_A1816 hypothetical protein
YP_004783295.1	KEGG: shl:Shal_3553 hypothetical protein
YP_004783296.1	PFAM: Protein of unknown function DUF2282, transmembrane; KEGG: llo:LLO_1725 hypothetical protein
YP_004783298.1	manually curated; PFAM: HTH transcriptional regulator, MerR; KEGG: afr:AFE_2509 transcriptional regulator, MerR family; SMART: HTH transcriptional regulator, MerR
YP_004783300.1	PFAM: ATPase associated with various cellular activities, AAA-5; CbbQ/NirQ/NorQ C-terminal; KEGG: afr:AFE_2536 CbbQ/NirQ/NorQ/GpvN family protein
YP_004783302.1	PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: nmu:Nmul_A2682 thioredoxin
YP_004783303.1	PFAM: Phosphoglycerate mutase; KEGG: afr:AFE_0155 phosphoglycerate mutase family protein
YP_004783304.1	KEGG: afr:AFE_2924 glucose-6-phosphate isomerase; HAMAP: Phosphoglucose isomerase (PGI); PFAM: Phosphoglucose isomerase (PGI)
YP_004783305.1	KEGG: pna:Pnap_4495 transaldolase; TIGRFAM: Transaldolase subfamily; PFAM: Transaldolase
YP_004783306.1	KEGG: tbd:Tbd_1341 putative mercuric reductase; TIGRFAM: Mercuric reductase MerA; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004783307.1	PFAM: Heavy metal transport/detoxification protein; KEGG: pbr:PB2503_12404 mercuric transport protein periplasmic component
YP_004783308.1	PFAM: Mercuric transport protein MerT; KEGG: rme:Rmet_6345 mercuric ion transport protein MerT
YP_004783309.1	PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; KEGG: afr:AFE_3161 D-isomer specific 2-hydroxyacid dehydrogenase family protein
YP_004783310.1	TIGRFAM: Enolase; HAMAP: Enolase; KEGG: hna:Hneap_0970 enolase; PFAM: Enolase, C-terminal; Enolase, N-terminal
YP_004783311.1	KEGG: afe:Lferr_1478 pyruvate kinase; TIGRFAM: Pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta
YP_004783312.1	PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: afr:AFE_1802 aldolase
YP_004783313.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: afr:AFE_1803 pyridine nucleotide-disulfide oxidoreductase
YP_004783314.1	KEGG: hna:Hneap_0971 plasma-membrane proton-efflux P-type ATPase; TIGRFAM: ATPase, P-type, plasma-membrane proton-efflux; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase
YP_004783315.1	PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; KEGG: afr:AFE_1811 2-oxo acid dehydrogenase, acyltransferase, putative
YP_004783316.1	PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: afr:AFE_1812 dehydrogenase complex, E1 component, beta subunit, putative
YP_004783317.1	PFAM: Dehydrogenase, E1 component; KEGG: afr:AFE_1813 dehydrogenase complex, E1 component, alpha subunit, putative
YP_004783318.1	KEGG: afr:AFE_1814 alkylhydroperoxidase AhpD domain protein; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_004783319.1	KEGG: afr:AFE_1892 hypothetical protein; TIGRFAM: polyphosphate kinase 2; PFAM: Polyphosphate kinase 2
YP_004783320.1	KEGG: afr:AFE_3250 phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase
YP_004783321.1	KEGG: afr:AFE_3251 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain
YP_004783322.1	KEGG: afr:AFE_2439 copper-translocating P-type ATPase; TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase
YP_004783324.1	PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: afe:Lferr_2063 hypothetical protein
YP_004783325.1	PFAM: Outer membrane efflux protein; KEGG: afe:Lferr_0170 outer membrane efflux protein
YP_004783326.1	KEGG: afr:AFE_2433 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004783327.1	KEGG: afe:Lferr_0172 CzcA family heavy metal efflux pump; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein
YP_004783328.1	KEGG: afe:Lferr_0173 cytochrome b561
YP_004783329.1	KEGG: afe:Lferr_0174 hypothetical protein
YP_004783330.1	KEGG: afe:Lferr_2056 hypothetical protein
YP_004783332.1	KEGG: afe:Lferr_0179 hypothetical protein
YP_004783333.1	PFAM: Acriflavin resistance protein; KEGG: afe:Lferr_0183 acriflavin resistance protein
YP_004783334.1	KEGG: afe:Lferr_0184 hypothetical protein
YP_004783335.1	PFAM: Outer membrane efflux protein; KEGG: afe:Lferr_0185 outer membrane efflux protein
YP_004783336.1	KEGG: afe:Lferr_0186 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase
YP_004783337.1	KEGG: afe:Lferr_0187 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004783338.1	KEGG: afe:Lferr_0144 Tn7-like transposition protein C
YP_004783339.1	PFAM: Transposase, IS4-like; KEGG: eba:p2A221 transposase
YP_004783340.1	KEGG: afe:Lferr_0142 hypothetical protein
YP_004783341.1	PFAM: DNA methylase, adenine-specific; KEGG: glo:Glov_3517 N-6 DNA methylase
YP_004783342.1	KEGG: dvl:Dvul_0856 hypothetical protein
YP_004783343.1	KEGG: dvl:Dvul_0855 SMC domain-containing protein
YP_004783344.1	PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: glo:Glov_3515 restriction modification system DNA specificity domain
YP_004783345.1	KEGG: neu:NE1524 hypothetical protein; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Putative addiction module antidote protein, CC2985
YP_004783346.1	PFAM: Plasmid stabilisation system; KEGG: bsb:Bresu_1458 plasmid stabilization system
YP_004783347.1	KEGG: glo:Glov_3512 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; SMART: DEAD-like helicase, N-terminal
YP_004783348.1	PFAM: ATPase associated with various cellular activities, AAA-4; KEGG: aaa:Acav_0838 putative transcriptional regulator
YP_004783349.1	KEGG: bav:BAV0547 hypothetical protein; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory
YP_004783350.1	PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_0455 hypothetical protein
YP_004783351.1	KEGG: afr:AFE_0457 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta
YP_004783352.1	KEGG: afr:AFE_0458 rare lipoprotein B, putative
YP_004783353.1	KEGG: afr:AFE_0459 leucyl-tRNA synthetase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial
YP_004783355.1	KEGG: eba:ebD102 hypothetical protein; TIGRFAM: Addiction module toxin, Txe/YoeB; Addiction module toxin, RelE/StbE; PFAM: Addiction module toxin, Txe/YoeB
YP_004783356.1	TIGRFAM: Prevent-host-death protein; KEGG: eba:ebD103 putative antitoxin of toxin-antitoxin stability system
YP_004783357.1	KEGG: app:CAP2UW1_0321 putative transcriptional regulator
YP_004783358.1	KEGG: gca:Galf_0854 regulatory protein MarR
YP_004783359.1	KEGG: mag:amb3185 hypothetical protein
YP_004783360.1	PFAM: Peptidase M15D, vanX D-ala-D-ala dipeptidase; KEGG: afr:AFE_0462 D-alanyl-D-alanine dipeptidase, putative
YP_004783361.1	PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: gca:Galf_2119 sulphate transporter
YP_004783362.1	PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: afr:AFE_0463 formamidopyrimidine-DNA glycosylase, putative
YP_004783363.1	SMART: Rhodanese-like; KEGG: afe:Lferr_0624 rhodanese domain-containing protein
YP_004783364.1	KEGG: afr:AFE_0465 cation efflux family protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein
YP_004783365.1	KEGG: afr:AFE_0466 glutamine synthetase, type I; TIGRFAM: Glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp
YP_004783366.1	KEGG: afe:Lferr_0627 hypothetical protein
YP_004783367.1	PFAM: Transposase IS3/IS911; KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein
YP_004783368.1	KEGG: pna:Pnap_0429 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core
YP_004783369.1	KEGG: afr:AFE_0469 protein-L-isoaspartate O-methyltransferase; TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase
YP_004783370.1	KEGG: afr:AFE_0470 RNA polymerase sigma-38 factor; TIGRFAM: RNA polymerase sigma factor RpoS, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4
YP_004783371.1	PFAM: Protein of unknown function DUF498; KEGG: afr:AFE_0471 hypothetical protein
YP_004783372.1	PFAM: Aminotransferase, class I/II; KEGG: afr:AFE_0472 aminotransferase, class I/II
YP_004783373.1	PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; KEGG: afe:Lferr_0633 homoserine dehydrogenase
YP_004783374.1	KEGG: afr:AFE_0474 threonine synthase; TIGRFAM: Threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004783375.1	KEGG: afr:AFE_0475 hypothetical protein
YP_004783376.1	KEGG: afr:AFE_0476 single-stranded-DNA-specific exonuclease RecJ
YP_004783377.1	PFAM: Integrase, catalytic core, phage; KEGG: reh:H16_A0820 site-specific recombinase XerD
YP_004783378.1	KEGG: reh:H16_A0821 hypothetical protein
YP_004783379.1	KEGG: reh:H16_A0822 putative phage integrase
YP_004783380.1	KEGG: reh:H16_A0823 hypothetical protein
YP_004783381.1	PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; KEGG: afr:AFE_0476 single-stranded-DNA-specific exonuclease RecJ
YP_004783383.1	KEGG: noc:Noc_0639 hypothetical protein
YP_004783384.1	PFAM: Uncharacterised protein family UPF0153; KEGG: xfa:XF2027 hypothetical protein
YP_004783386.1	PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: afr:AFE_2886 PemI family protein
YP_004783387.1	KEGG: afr:AFE_3189 hypothetical protein
YP_004783388.1	KEGG: afe:Lferr_1287 putative DNA methylase
YP_004783389.1	PFAM: Protein of unknown function DUF1016; KEGG: vei:Veis_1750 hypothetical protein
YP_004783390.1	SMART: DEAD-like helicase, N-terminal; KEGG: afe:Lferr_1285 YeeB-like protein
YP_004783391.1	PFAM: Putative helicase A859L; KEGG: afe:Lferr_1284 YeeC-like protein
YP_004783393.1	PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: afe:Lferr_0188 class V aminotransferase
YP_004783395.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afe:Lferr_0195 FAD-dependent pyridine nucleotide-disulfide oxidoreductase
YP_004783396.1	KEGG: afr:AFE_2439 copper-translocating P-type ATPase; TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase
YP_004783397.1	KEGG: afr:AFE_2435 hypothetical protein
YP_004783398.1	PFAM: Outer membrane efflux protein; KEGG: afe:Lferr_0170 outer membrane efflux protein
YP_004783399.1	KEGG: afr:AFE_2433 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004783400.1	KEGG: afe:Lferr_0172 CzcA family heavy metal efflux pump; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein
YP_004783401.1	KEGG: afe:Lferr_0173 cytochrome b561
YP_004783402.1	KEGG: afe:Lferr_0174 hypothetical protein
YP_004783403.1	KEGG: afe:Lferr_0175 hypothetical protein
YP_004783404.1	KEGG: afe:Lferr_0179 hypothetical protein
YP_004783405.1	KEGG: cph:Cpha266_2208 hypothetical protein
YP_004783406.1	KEGG: cph:Cpha266_2209 hypothetical protein
YP_004783407.1	KEGG: nhl:Nhal_1636 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core
YP_004783408.1	KEGG: azo:azo3030 hypothetical protein
YP_004783409.1	manually curated; KEGG: amv:ACMV_06460 hypothetical protein
YP_004783410.1	KEGG: afr:AFE_1834 hypothetical protein
YP_004783412.1	KEGG: azo:azo3029 hypothetical protein
YP_004783413.1	PFAM: Peptidase C39, bacteriocin processing; KEGG: ppd:Ppro_2175 peptidase C39, bacteriocin processing
YP_004783414.1	KEGG: rpf:Rpic12D_0335 signal peptide protein
YP_004783415.1	KEGG: hmg:100209204 similar to predicted protein
YP_004783416.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: afr:AFE_1707 sensory box-containing diguanylate cyclase, putative; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF
YP_004783417.1	PFAM: Glycosyl transferase, family 2; Type IV pilus assembly PilZ; KEGG: bph:Bphy_2377 cellulose synthase
YP_004783418.1	KEGG: mpo:Mpop_0886 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; SMART: Diguanylate phosphodiesterase, predicted
YP_004783419.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: afr:AFE_3183 ISAfe1, transposase
YP_004783420.1	KEGG: afr:AFE_2495 hypothetical protein
YP_004783421.1	manually curated; KEGG: afr:AFE_2494 hypothetical protein
YP_004783422.1	PFAM: 4-vinyl reductase, 4VR; KEGG: mfs:MFS40622_1455 4-vinyl reductase 4VR
YP_004783423.1	manually curated; KEGG: ade:Adeh_0244 LigA
YP_004783424.1	TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase; KEGG: afr:AFE_0480 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type
YP_004783425.1	KEGG: afr:AFE_0481 lipoprotein releasing system transmembrane protein LolC; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Protein of unknown function DUF214, permase predicted
YP_004783426.1	KEGG: afr:AFE_0483 lipoprotein releasing system, ATP-binding protein LolD; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004783427.1	PFAM: Protein of unknown function DUF2062; KEGG: afr:AFE_0482 hypothetical protein
YP_004783428.1	KEGG: afr:AFE_0484 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein
YP_004783429.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: afr:AFE_0485 MotA/TolQ/ExbB proton channel family protein
YP_004783430.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: afr:AFE_0486 biopolymer transport protein, ExbD/TolR family
YP_004783431.1	PFAM: Protein of unknown function DUF374; KEGG: afe:Lferr_0647 hypothetical protein
YP_004783432.1	KEGG: afr:AFE_0488 hypothetical protein
YP_004783433.1	TIGRFAM: Tetraacyldisaccharide 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; KEGG: afr:AFE_0489 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase
YP_004783434.1	KEGG: afr:AFE_0490 hypothetical protein; HAMAP: UPF0434 protein ycaR; PFAM: Protein of unknown function DUF343
YP_004783435.1	TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: afr:AFE_0491 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase
YP_004783436.1	KEGG: afr:AFE_0492 inorganic pyrophosphatase; HAMAP: Inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase
YP_004783437.1	KEGG: afr:AFE_0493 hypothetical protein
YP_004783438.1	KEGG: tgr:Tgr7_1787 hypothetical protein
YP_004783441.1	PFAM: Uncharacterised protein family UPF0150; KEGG: app:CAP2UW1_2579 hypothetical protein
YP_004783442.1	PFAM: YcfA-like; KEGG: app:CAP2UW1_2578 YcfA family protein
YP_004783443.1	PFAM: DinB; KEGG: pfs:PFLU2952 hypothetical protein
YP_004783444.1	KEGG: afe:Lferr_2023 transposase IS3/IS911 family protein
YP_004783445.1	KEGG: sbl:Sbal_4350 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core
YP_004783446.1	PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; KEGG: gpb:HDN1F_31110 RNA-directed DNA polymerase
YP_004783447.1	KEGG: ccs:CCNA_01785 hypothetical protein
YP_004783448.1	PFAM: Uncharacterised protein family UPF0150; KEGG: pph:Ppha_1441 protein of unknown function UPF0150
YP_004783449.1	PFAM: YcfA-like; KEGG: cyc:PCC7424_2669 YcfA family protein
YP_004783450.1	PFAM: Protein of unknown function DUF1778; KEGG: brh:RBRH_00853 hypothetical protein
YP_004783451.1	PFAM: GCN5-related N-acetyltransferase; KEGG: gpb:HDN1F_37230 GCN5-related N-acetyltransferase
YP_004783452.1	PFAM: Uracil-DNA glycosylase-like; KEGG: afe:Lferr_0676 uracil-DNA glycosylase superfamily
YP_004783453.1	KEGG: afr:AFE_0519 hypothetical protein; HAMAP: UPF0061 protein ydiU; PFAM: Uncharacterised protein family UPF0061
YP_004783454.1	TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: afr:AFE_0520 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core
YP_004783455.1	manually curated; HAMAP: ATP-dependent Clp protease adapter protein clpS; KEGG: afr:AFE_0521 ATP-dependent Clp protease adaptor protein ClpS; PFAM: Adaptor protein ClpS, core
YP_004783456.1	PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: afr:AFE_0522 peptidyl-prolyl cis-trans isomerase, PPIC-type
YP_004783457.1	KEGG: afr:AFE_0523 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; TIGRFAM: DJ-1; PFAM: ThiJ/PfpI
YP_004783458.1	TIGRFAM: Peptidase S41A, C-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: afr:AFE_0524 carboxy-terminal peptidase; SMART: Peptidase S41; PDZ/DHR/GLGF
YP_004783459.1	PFAM: Peptidase M23; KEGG: afr:AFE_0525 M23/M37 peptidase domain protein
YP_004783460.1	TIGRFAM: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; HAMAP: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: afr:AFE_0526 phosphoglyceromutase; PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme
YP_004783461.1	KEGG: afr:AFE_0527 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: Glycogen/starch/alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35
YP_004783462.1	PFAM: Host attachment protein; KEGG: afr:AFE_0528 hypothetical protein
YP_004783463.1	KEGG: afr:AFE_0529 rhodanese-like domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like
YP_004783464.1	PFAM: Carbohydrate/purine kinase; KEGG: afr:AFE_0530 carbohydrate kinase, PfkB family
YP_004783465.1	KEGG: afr:AFE_0531 hypothetical protein
YP_004783466.1	TIGRFAM: S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthase; KEGG: afr:AFE_0532 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase
YP_004783467.1	TIGRFAM: S-adenosyl-L-homocysteine hydrolase; HAMAP: Adenosylhomocysteinase; KEGG: afe:Lferr_0691 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding
YP_004783468.1	KEGG: afr:AFE_0535 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase
YP_004783469.1	PFAM: Phosphoribulokinase/uridine kinase; KEGG: afr:AFE_0536 phosphoribulokinase
YP_004783470.1	PFAM: Sodium/calcium exchanger membrane region; KEGG: afr:AFE_0587 sodium/calcium exchanger
YP_004783471.1	KEGG: afr:AFE_0589 ATP-dependent RNA helicase, DEAD/DEAH box family; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal
YP_004783472.1	KEGG: afr:AFE_0590 cold-shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004783473.1	TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; KEGG: afr:AFE_0591 primosomal protein N`; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal
YP_004783474.1	TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; HAMAP: 4-hydroxybenzoate octaprenyltransferase; KEGG: afr:AFE_0592 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase
YP_004783475.1	PFAM: Chorismate--pyruvate lyase; KEGG: afe:Lferr_0745 chorismate lyase
YP_004783476.1	KEGG: afr:AFE_0594 phosphatidylethanolamine N-methyltransferase, putative
YP_004783477.1	KEGG: afr:AFE_0595 lipoprotein, putative
YP_004783478.1	SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: tRNA-i(6)A37 modification enzyme MiaB; Methylthiotransferase; KEGG: afr:AFE_0596 (dimethylallyl)adenosine tRNA methylthiotransferase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM
YP_004783479.1	PFAM: PhoH-like protein; KEGG: afr:AFE_0597 PhoH-like protein
YP_004783480.1	TIGRFAM: Uncharacterised protein family UPF0054; HAMAP: Uncharacterised protein family UPF0054; KEGG: afe:Lferr_0750 hypothetical protein; PFAM: Uncharacterised protein family UPF0054
YP_004783481.1	KEGG: afe:Lferr_0751 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; Transporter-associated region; SMART: Cystathionine beta-synthase, core
YP_004783482.1	TIGRFAM: Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; KEGG: afe:Lferr_0752 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_004783483.1	PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: afr:AFE_0600 PmbA protein
YP_004783484.1	PFAM: ABC transporter metal-binding lipoprotein; KEGG: afe:Lferr_0754 periplasmic solute-binding protein
YP_004783485.1	KEGG: afr:AFE_0603 cation ABC transporter, ATP-binding protein, putative; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004783486.1	PFAM: ABC-3; KEGG: afe:Lferr_0756 ABC-3 protein
YP_004783487.1	PFAM: ABC-3; KEGG: afr:AFE_0605 cation ABC transporter, permease protein, putative
YP_004783488.1	KEGG: afr:AFE_0606 hypothetical protein
YP_004783489.1	KEGG: afr:AFE_0607 hypothetical protein
YP_004783490.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: afr:AFE_0609 NAD-dependent epimerase/dehydratase family protein
YP_004783491.1	KEGG: afr:AFE_0610 hypothetical protein
YP_004783492.1	KEGG: afr:AFE_0611 hypothetical protein
YP_004783493.1	KEGG: afr:AFE_0607 hypothetical protein
YP_004783494.1	KEGG: afe:Lferr_0764 hypothetical protein
YP_004783495.1	PFAM: Glycosyl transferase, family 28, C-terminal; KEGG: afe:Lferr_0765 glycosyl transferase-like protein
YP_004783496.1	PFAM: Glycosyl transferase, group 1; KEGG: afr:AFE_0615 glycosyl transferase, group 1
YP_004783497.1	KEGG: afr:AFE_0616 glycosyltransferase, group 1; manually curated; PFAM: Glycosyl transferase, group 1
YP_004783498.1	KEGG: afr:AFE_0617 ABC transporter, permease/ATP-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region; SMART: ATPase, AAA+ type, core
YP_004783499.1	KEGG: afr:AFE_0618 UDP-glucose/GDP-mannose dehydrogenase family protein; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal
YP_004783500.1	KEGG: afr:AFE_0619 hypothetical protein
YP_004783501.1	KEGG: afr:AFE_0621 phosphoglycerate mutase family protein; TIGRFAM: Alpha-ribazole phosphatase, CobC; PFAM: Phosphoglycerate mutase
YP_004783502.1	KEGG: afr:AFE_0620 hypothetical protein
YP_004783503.1	KEGG: afr:AFE_0622 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004783504.1	PFAM: Methyltransferase type 11; KEGG: afr:AFE_0623 methyltransferase, UbiE/COQ5 family
YP_004783505.1	TIGRFAM: 3-isopropylmalate dehydratase, large subunit region; HAMAP: 3-isopropylmalate dehydratase, large subunit region; KEGG: afr:AFE_0624 isopropylmalate isomerase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha
YP_004783506.1	TIGRFAM: 3-isopropylmalate dehydratase, small subunit region; HAMAP: 3-isopropylmalate dehydratase, small subunit region; KEGG: afr:AFE_0626 isopropylmalate isomerase small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel
YP_004783507.1	KEGG: afr:AFE_0627 hypothetical protein
YP_004783508.1	TIGRFAM: Pyridoxamine 5'-phosphate oxidase; HAMAP: Pyridoxamine 5'-phosphate oxidase; KEGG: afr:AFE_0628 pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal
YP_004783509.1	TIGRFAM: Ribose 5-phosphate isomerase; HAMAP: Ribose-5-phosphate isomerase, subgroup; KEGG: afr:AFE_0629 ribose 5-phosphate isomerase A; PFAM: Ribose 5-phosphate isomerase; ThiJ/PfpI
YP_004783511.1	PFAM: Cytochrome c oxidase subunit II C-terminal; KEGG: afr:AFE_0631 cytochrome o ubiquinol oxidase, subunit II
YP_004783512.1	PFAM: Cytochrome c oxidase, subunit I; KEGG: afe:Lferr_0782 cytochrome-c oxidase
YP_004783513.1	PFAM: Cytochrome c oxidase, subunit III; KEGG: afr:AFE_0633 cytochrome o ubiquinol oxidase, subunit III
YP_004783514.1	KEGG: afr:AFE_0634 cytochrome o ubiquinol oxidase, subunit IV
YP_004783515.1	TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: afr:AFE_3143 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase
YP_004783517.1	KEGG: afr:AFE_0636 undecaprenyl pyrophosphate phosphatase; HAMAP: Undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA
YP_004783518.1	TIGRFAM: Prokaryotic transcription elongation factor GreA; HAMAP: Transcription elongation factor greA; KEGG: afr:AFE_0638 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic
YP_004783519.1	KEGG: afr:AFE_0639 carbamoyl-phosphate synthase, large subunit; TIGRFAM: Carbamoyl phosphate synthase, large subunit, glutamine-dependent; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Carbamoyl phosphate synthetase, large subunit, oligomerisation; MGS-like
YP_004783520.1	KEGG: afr:AFE_0640 carbamoyl-phosphate synthase, small subunit; TIGRFAM: Carbamoyl phosphate synthase, small subunit; PFAM: Carbamoyl phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal
YP_004783521.1	KEGG: afr:AFE_0641 hypothetical protein
YP_004783522.1	KEGG: afr:AFE_0956 metallo-beta-lactamase family protein
YP_004783523.1	PFAM: Cytochrome c oxidase subunit II C-terminal; KEGG: afr:AFE_0631 cytochrome o ubiquinol oxidase, subunit II
YP_004783524.1	PFAM: Cytochrome c oxidase, subunit I; KEGG: afe:Lferr_0782 cytochrome-c oxidase
YP_004783525.1	PFAM: Cytochrome c oxidase, subunit III; KEGG: afr:AFE_0633 cytochrome o ubiquinol oxidase, subunit III
YP_004783526.1	KEGG: afr:AFE_0634 cytochrome o ubiquinol oxidase, subunit IV
YP_004783528.1	KEGG: afr:AFE_2246 DsbG domain protein
YP_004783529.1	KEGG: hya:HY04AAS1_0222 hypothetical protein
YP_004783530.1	PFAM: Integrase, catalytic core, phage; KEGG: sli:Slin_1967 integrase family protein
YP_004783531.1	KEGG: noc:Noc_0284 hypothetical protein
YP_004783532.1	KEGG: noc:Noc_0283 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004783536.1	KEGG: alv:Alvin_1702 hypothetical protein
YP_004783537.1	KEGG: nwi:Nwi_1258 hypothetical protein
YP_004783538.1	SMART: ATPase, AAA+ type, core; KEGG: psp:PSPPH_B0059 ExeA-like protein
YP_004783539.1	PFAM: Integrase, catalytic core; KEGG: psp:PSPPH_B0058 phage integrase family site specific recombinase
YP_004783540.1	PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix region; KEGG: psp:PSPPH_B0057 resolvase, putative
YP_004783541.1	KEGG: cph:Cpha266_2066 hypothetical protein
YP_004783545.1	KEGG: rso:RSc2475 hypothetical protein
YP_004783546.1	KEGG: afr:AFE_2325 hypothetical protein
YP_004783547.1	PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; KEGG: afr:AFE_2324 phosphoglucomutase
YP_004783548.1	KEGG: sus:Acid_7627 plasmid related protein
YP_004783549.1	KEGG: afr:AFE_2323 hypothetical protein
YP_004783550.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: afe:Lferr_1961 NAD-dependent epimerase/dehydratase
YP_004783551.1	PFAM: Luciferase-like, subgroup; KEGG: afr:AFE_2321 monooxygenase, luciferase-like protein
YP_004783552.1	HAMAP: Oligoribonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: afr:AFE_2320 oligoribonuclease Orn; SMART: Exonuclease
YP_004783553.1	KEGG: afr:AFE_2319 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region
YP_004783554.1	KEGG: afe:Lferr_1957 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region
YP_004783555.1	PFAM: Outer membrane lipoprotein Slp; KEGG: afr:AFE_2316 outer membrane lipoprotein Slp, putative
YP_004783556.1	KEGG: afr:AFE_2272 hypothetical protein
YP_004783557.1	PFAM: MotA/TolQ/ExbB proton channel; KEGG: afr:AFE_2270 MotA/TolQ/ExbB proton channel family protein
YP_004783558.1	PFAM: Biopolymer transport protein ExbD/TolR; KEGG: afr:AFE_2269 biopolymer transport protein, ExbD/TolR family
YP_004783559.1	KEGG: afr:AFE_2268 TonB family protein; manually curated; TIGRFAM: TonB, C-terminal
YP_004783560.1	PFAM: Phosphoesterase; KEGG: afr:AFE_2267 phosphoesterase family protein
YP_004783561.1	TIGRFAM: Dihydroorotate dehydrogenase, class 2; HAMAP: Dihydroorotate dehydrogenase; KEGG: afr:AFE_2264 dihydroorotate dehydrogenase; PFAM: Dihydroorotate dehydrogenase, class 1/ 2
YP_004783562.1	KEGG: afr:AFE_2263 coproporphyrinogen III oxidase; HAMAP: Coproporphyrinogen-III oxidase, aerobic; PFAM: Coproporphyrinogen III oxidase
YP_004783563.1	KEGG: afr:AFE_2262 SUA5/YciO/YrdC family protein; HAMAP: ribosome maturation factor rimN; PFAM: Sua5/YciO/YrdC, N-terminal
YP_004783564.1	TIGRFAM: Phosphoribosylglycinamide synthetase; HAMAP: Phosphoribosylglycinamide synthetase; KEGG: afr:AFE_2261 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain
YP_004783565.1	SMART: AICARFT/IMPCHase bienzyme, formylation region; TIGRFAM: AICARFT/IMPCHase bienzyme; KEGG: afr:AFE_2260 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; HAMAP: Bifunctional purine biosynthesis protein purH; PFAM: AICARFT/IMPCHase bienzyme, formylation region; MGS-like
YP_004783566.1	KEGG: afr:AFE_2256 metallo-beta-lactamase family protein
YP_004783567.1	KEGG: afe:Lferr_1902 hypothetical protein
YP_004783568.1	TIGRFAM: Potassium transporting ATPase, C subunit; HAMAP: Potassium transporting ATPase, C subunit; KEGG: afr:AFE_2473 K+-transporting ATPase, C subunit; PFAM: Potassium transporting ATPase, C subunit
YP_004783569.1	TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; HAMAP: Potassium-transporting ATPase, B chain; KEGG: afr:AFE_2474 K+-transporting ATPase, B subunit; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase
YP_004783570.1	TIGRFAM: ATPase, K+ transporting, A subunit; HAMAP: ATPase, K+ transporting, A subunit; KEGG: afr:AFE_2475 K+-transporting ATPase, A subunit; PFAM: ATPase, K+ transporting, A subunit
YP_004783571.1	TIGRFAM: ATPase, P-type, K+-transporting, F subunit; KEGG: afr:AFE_2231 K+-transporting ATPase, F subunit
YP_004783572.1	KEGG: afr:AFE_2230 hypothetical protein
YP_004783573.1	KEGG: afr:AFE_2229 sensor histidine kinase KdpD; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; UspA; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region
YP_004783574.1	KEGG: afr:AFE_2228 DNA-binding response regulator KdpE; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region
YP_004783575.1	PFAM: Haloacid dehalogenase-like hydrolase; KEGG: afe:Lferr_1882 haloacid dehalogenase domain-containing protein hydrolase
YP_004783576.1	PFAM: Aminoglycoside phosphotransferase; KEGG: afr:AFE_2226 hypothetical protein
YP_004783577.1	KEGG: afe:Lferr_1880 hypothetical protein
YP_004783578.1	PFAM: Amino acid permease-associated region; KEGG: afr:AFE_2457 amino acid permease family protein
YP_004783580.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: tin:Tint_2563 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted
YP_004783581.1	PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; KEGG: afr:AFE_2223 penicillin-binding protein 1A, putative
YP_004783582.1	KEGG: afr:AFE_2222 glutamyl-tRNA synthetase; TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain
YP_004783583.1	KEGG: afr:AFE_2221 cysteinyl-tRNA synthetase; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR
YP_004783584.1	KEGG: afr:AFE_2220 ribonuclease, Rne/Rng family; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain
YP_004783585.1	TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: afr:AFE_2219 ribosomal large subunit pseudouridine synthase C; SMART: RNA-binding S4
YP_004783586.1	PFAM: Inositol monophosphatase; KEGG: afr:AFE_0669 inositol monophosphate family protein
YP_004783587.1	KEGG: afr:AFE_0670 RNA methyltransferase, TrmH family, group 1; TIGRFAM: RNA methyltransferase TrmH, group 1; PFAM: tRNA/rRNA methyltransferase, SpoU
YP_004783588.1	TIGRFAM: Serine O-acetyltransferase; KEGG: afe:Lferr_0820 serine O-acetyltransferase
YP_004783589.1	KEGG: afr:AFE_0672 iron-sulfur cluster assembly transcription factor IscR; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2
YP_004783590.1	TIGRFAM: Cysteine desulfurase; HAMAP: Cysteine desulfurase; KEGG: afe:Lferr_0822 cysteine desulfurase IscS; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_004783591.1	KEGG: afr:AFE_0674 FeS cluster assembly scaffold protein IscU; TIGRFAM: ISC system FeS cluster assembly, IscU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal
YP_004783592.1	KEGG: afr:AFE_0675 iron-sulfur cluster assembly protein IscA; TIGRFAM: ISC system FeS cluster assembly, IscA scaffold; FeS cluster insertion; PFAM: FeS cluster biogenesis
YP_004783593.1	TIGRFAM: Co-chaperone Hsc20; HAMAP: Co-chaperone protein hscB; KEGG: afe:Lferr_0825 co-chaperone Hsc20; PFAM: Heat shock cognate protein B, C-terminal oligomerisation; Heat shock protein DnaJ, N-terminal
YP_004783594.1	TIGRFAM: ISC system FeS cluster assembly, HscA chaperone; HAMAP: ISC system FeS cluster assembly, HscA chaperone; KEGG: afr:AFE_0677 chaperone protein HscA; PFAM: Heat shock protein 70
YP_004783595.1	KEGG: afr:AFE_0678 ferredoxin, 2Fe-2S; TIGRFAM: Ferredoxin, 2Fe-2S type; PFAM: Ferredoxin
YP_004783596.1	KEGG: afr:AFE_0679 hypothetical protein; TIGRFAM: ISC system FeS cluster assembly, IscX; PFAM: ISC system FeS cluster assembly, IscX
YP_004783597.1	TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: afr:AFE_0680 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase-like
YP_004783598.1	PFAM: Patatin; KEGG: afr:AFE_0681 patatin-like phospholipase family protein
YP_004783599.1	TIGRFAM: Prevent-host-death protein; KEGG: sfu:Sfum_1406 prevent-host-death family protein
YP_004783600.1	KEGG: amv:ACMV_26750 hypothetical protein
YP_004783601.1	KEGG: tye:THEYE_A1689 type I restriction enzyme EcoKI M protein
YP_004783602.1	KEGG: afr:AFE_0698 S-formylglutathione hydrolase; TIGRFAM: S-formylglutathione hydrolase; PFAM: Putative esterase
YP_004783603.1	KEGG: afr:AFE_0642 thiamine biosynthesis protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS
YP_004783604.1	KEGG: afr:AFE_0643 thiamin biosynthesis protein ThiG; HAMAP: Thiazole biosynthesis; PFAM: Thiazole biosynthesis
YP_004783605.1	KEGG: afr:AFE_0644 hypothetical protein
YP_004783606.1	manually curated; TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; KEGG: afr:AFE_0645 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal
YP_004783607.1	KEGG: afr:AFE_0647 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein
YP_004783608.1	KEGG: afr:AFE_0646 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004783609.1	KEGG: afr:AFE_0648 ABC transporter, permease protein, putative; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140
YP_004783610.1	SMART: Water Stress/Hypersensitive response domain; KEGG: afr:AFE_0650 hypothetical protein
YP_004783611.1	PFAM: Endonuclease/exonuclease/phosphatase; KEGG: afe:Lferr_0800 endonuclease/exonuclease/phosphatase
YP_004783612.1	KEGG: afr:AFE_0651 hypothetical protein
YP_004783613.1	PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; KEGG: afr:AFE_0652 molybdopterin biosynthesis MoeB protein
YP_004783614.1	KEGG: tgr:Tgr7_3241 hypothetical protein
YP_004783615.1	KEGG: afr:AFE_0653 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2006
YP_004783616.1	PFAM: Protein of unknown function DUF214, permase predicted; KEGG: afr:AFE_0654 ABC transporter, permease protein
YP_004783617.1	KEGG: afe:Lferr_0805 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004783618.1	KEGG: afr:AFE_0657 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_004783619.1	TIGRFAM: Transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; KEGG: afr:AFE_0658 transcription termination factor Rho; SMART: Cold shock protein; ATPase, AAA+ type, core
YP_004783620.1	TIGRFAM: Ribosomal protein L31; HAMAP: 50S ribosomal protein L31; KEGG: afr:AFE_0659 ribosomal protein L31; PFAM: Ribosomal protein L31
YP_004783621.1	PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; KEGG: afr:AFE_0660 malic enzyme family protein
YP_004783622.1	PFAM: Uncharacterised protein family UPF0118; KEGG: afr:AFE_0661 hypothetical protein
YP_004783623.1	TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: afr:AFE_0662 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase
YP_004783624.1	PFAM: Protein of unknown function DUF88; KEGG: afr:AFE_0663 hypothetical protein
YP_004783625.1	KEGG: afr:AFE_0664 N-acetylglutamate synthase; TIGRFAM: Amino-acid N-acetyltransferase (ArgA); PFAM: Aspartate/glutamate/uridylate kinase; GCN5-related N-acetyltransferase
YP_004783626.1	PFAM: BolA-like protein; KEGG: afr:AFE_0665 BolA family protein
YP_004783627.1	PFAM: YCII-related; KEGG: afr:AFE_0666 YCII-related domain protein
YP_004783628.1	TIGRFAM: Intracellular septation protein A; HAMAP: Intracellular septation protein A; KEGG: afr:AFE_0667 intracellular septation protein A; PFAM: Intracellular septation protein A
YP_004783629.1	KEGG: afr:AFE_0668 hypothetical protein; PFAM: Protein of unknown function DUF815; SMART: ATPase, AAA+ type, core
YP_004783630.1	KEGG: tsc:TSC_c24400 AbrB family transcriptional regulator
YP_004783631.1	TIGRFAM: Addiction module antidote protein, HI1420; KEGG: afe:Lferr_0282 putative transcriptional regulator
YP_004783633.1	PFAM: Nucleotidyltransferase; KEGG: glo:Glov_3592 DNA polymerase beta domain protein region
YP_004783634.1	KEGG: glo:Glov_3593 nucleotidyltransferase substrate binding protein, HI0074 family; TIGRFAM: Nucleotidyltransferase substrate binding protein, HI0074; PFAM: Nucleotidyltransferase substrate binding protein, HI0074
YP_004783635.1	KEGG: syp:SYNPCC7002_A1564 HicB-related protein
YP_004783636.1	KEGG: lbf:LBF_1159 hypothetical protein
YP_004783637.1	PFAM: Transposase, IS4-like; KEGG: npu:Npun_BR216 hypothetical protein
YP_004783638.1	KEGG: dat:HRM2_05840 hypothetical protein
YP_004783639.1	PFAM: PilT protein, N-terminal; KEGG: eba:ebD130 virulence associated protein VapC
YP_004783640.1	PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: eba:ebA7217 related to putative virulence-associated proteins and nitrogen regulatory protein NtrP
YP_004783641.1	KEGG: dba:Dbac_2317 AAA family ATPase
YP_004783642.1	KEGG: afr:AFE_1366 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; Nucleotidyl transferase
YP_004783643.1	KEGG: slt:Slit_2475 hypothetical protein
YP_004783644.1	PFAM: Protein of unknown function DUF433; KEGG: ava:Ava_1741 hypothetical protein
YP_004783645.1	KEGG: afr:AFE_3292 GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004783646.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: afr:AFE_3291 NAD-dependent epimerase/dehydratase family protein
YP_004783649.1	KEGG: afr:AFE_2093 hypothetical protein
YP_004783650.1	KEGG: bxe:Bxe_C1199 hypothetical protein
YP_004783651.1	KEGG: afr:AFE_0073 undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase
YP_004783652.1	PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_0082 O antigen biosynthesis rhamnosyltransferase, putative
YP_004783653.1	PFAM: Glycosyl transferase, group 1; KEGG: afr:AFE_0081 mannosyltransferase
YP_004783654.1	KEGG: btl:BALH_4774 hypothetical protein
YP_004783655.1	PFAM: Glycosyl transferase, group 1; KEGG: afr:AFE_0079 glycosyltransferase, putative
YP_004783656.1	PFAM: Glycosyl transferase, family 2; KEGG: met:M446_4968 glycosyl transferase family protein
YP_004783657.1	PFAM: Polysaccharide biosynthesis protein; KEGG: ypb:YPTS_1047 O-unit flippase-like protein
YP_004783658.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: dhd:Dhaf_4183 NAD-dependent epimerase/dehydratase
YP_004783659.1	KEGG: cth:Cthe_2560 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related
YP_004783660.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bac:BamMC406_2290 DegT/DnrJ/EryC1/StrS aminotransferase
YP_004783661.1	KEGG: gca:Galf_2849 CDP-glucose 4,6-dehydratase; TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004783662.1	KEGG: slt:Slit_2899 glucose-1-phosphate cytidylyltransferase; TIGRFAM: Glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase
YP_004783663.1	KEGG: afr:AFE_1342 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase
YP_004783664.1	KEGG: afr:AFE_1341 protein-tyrosine phosphatase, putative
YP_004783665.1	KEGG: afr:AFE_1340 tyrosine-protein kinase, putative; TIGRFAM: Exopolysaccharide synthesis protein; PFAM: Lipopolysaccharide biosynthesis
YP_004783666.1	PFAM: Polysaccharide export protein; KEGG: afr:AFE_1339 polysaccharide biosynthesis/export domain protein
YP_004783667.1	KEGG: afr:AFE_1338 PAP2 family protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase
YP_004783669.1	TIGRFAM: clan AA aspartic protease, AF_0612 family; KEGG: syn:slr0890 hypothetical protein
YP_004783671.1	PFAM: PemK-like protein; KEGG: psb:Psyr_0890 toxin ChpB
YP_004783672.1	PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: kva:Kvar_1641 transcriptional regulator/antitoxin, MazE
YP_004783673.1	PFAM: PilT protein, N-terminal; KEGG: tmz:Tmz1t_0480 PilT protein domain protein
YP_004783674.1	KEGG: tmz:Tmz1t_0479 prevent-host-death family protein
YP_004783675.1	KEGG: rrs:RoseRS_3426 hypothetical protein
YP_004783677.1	manually curated; KEGG: afe:Lferr_0145 transposase family protein
YP_004783678.1	KEGG: afr:AFE_1370 undecaprenyl-phosphate galactosephosphotransferase, putative; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase
YP_004783680.1	KEGG: avn:Avin_50240 hypothetical protein
YP_004783682.1	KEGG: afe:Lferr_1002 hypothetical protein
YP_004783683.1	PFAM: CopG-like DNA-binding; KEGG: psp:PSPPH_1760 ribbon-helix-helix protein domain-containing protein
YP_004783684.1	KEGG: vap:Vapar_4559 hypothetical protein
YP_004783686.1	PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: cph:Cpha266_2270 transposase, IS204/IS1001/IS1096/IS1165 family protein
YP_004783687.1	KEGG: ajs:Ajs_2239 addiction module antitoxin; TIGRFAM: RelB antitoxin; PFAM: RelB antitoxin
YP_004783688.1	PFAM: Plasmid stabilisation system; KEGG: ajs:Ajs_2238 addiction module antitoxin
YP_004783690.1	KEGG: afr:AFE_2212 hypothetical protein
YP_004783691.1	PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; KEGG: afr:AFE_2211 oxidoreductase, FAD/FMN-binding
YP_004783692.1	PFAM: Dienelactone hydrolase; KEGG: afr:AFE_2210 carboxymethylenebutenolidase family protein
YP_004783693.1	PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: afr:AFE_2209 transcriptional regulator, TetR family
YP_004783694.1	KEGG: afr:AFE_2206 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase
YP_004783695.1	TIGRFAM: Na+/H+ antiporter NhaA; HAMAP: Na+/H+ antiporter NhaA; KEGG: afe:Lferr_1861 Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA
YP_004783696.1	TIGRFAM: Valyl-tRNA synthetase, class Ia; HAMAP: Valyl-tRNA synthetase; KEGG: afr:AFE_2204 valyl-tRNA synthetase
YP_004783697.1	KEGG: afe:Lferr_1859 hypothetical protein
YP_004783698.1	PFAM: DNA polymerase III chi subunit, HolC; KEGG: afr:AFE_2203 DNA polymerase III, chi subunit
YP_004783699.1	KEGG: afr:AFE_2201 cytosol aminopeptidase; HAMAP: cytosol aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal
YP_004783700.1	PFAM: Permease YjgP/YjgQ, predicted; KEGG: afr:AFE_2200 YjgP/YjgQ family protein
YP_004783701.1	PFAM: Permease YjgP/YjgQ, predicted; KEGG: afr:AFE_2199 YjgP/YjgQ family protein
YP_004783702.1	KEGG: afe:Lferr_1854 hypothetical protein
YP_004783703.1	KEGG: tgr:Tgr7_2771 glutathione S-transferase domain protein
YP_004783704.1	PFAM: Uncharacterised protein family UPF0310; KEGG: afr:AFE_2196 hypothetical protein
YP_004783705.1	KEGG: afr:AFE_2195 CyaY protein; TIGRFAM: Frataxin-like; PFAM: Frataxin-like
YP_004783706.1	TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: afr:AFE_2194 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain
YP_004783707.1	PFAM: Metallophosphoesterase; KEGG: afr:AFE_2193 diadenosine tetraphosphatase
YP_004783708.1	KEGG: afr:AFE_2192 hypothetical protein
YP_004783709.1	PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: afr:AFE_2190 ABC transporter, permease protein
YP_004783710.1	KEGG: afe:Lferr_1847 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004783711.1	TIGRFAM: Ribosomal protein S20; HAMAP: Ribosomal protein S20; KEGG: afr:AFE_2188 30S ribosomal protein S20; PFAM: Ribosomal protein S20
YP_004783712.1	PFAM: DNA helicase, UvrD/REP type; KEGG: afr:AFE_2187 ATP-dependent DNA helicase Rep
YP_004783713.1	TIGRFAM: Prolipoprotein diacylglyceryl transferase; HAMAP: Prolipoprotein diacylglyceryl transferase; KEGG: afr:AFE_2186 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase
YP_004783714.1	PFAM: Peptidyl-arginine deiminase, Porphyromonas-type; KEGG: afr:AFE_2176 peptidyl-arginine deiminase
YP_004783715.1	TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: afr:AFE_2175 ribosomal small subunit pseudouridine synthase A; SMART: RNA-binding S4
YP_004783716.1	PFAM: NUDIX hydrolase domain; KEGG: afr:AFE_2174 NUDIX hydrolase
YP_004783717.1	KEGG: afr:AFE_2173 NUDIX hydrolase; HAMAP: RNA pyrophosphohydrolase; PFAM: NUDIX hydrolase domain
YP_004783718.1	KEGG: afr:AFE_2171 GTP-binding protein
YP_004783719.1	PFAM: Polysaccharide deacetylase; KEGG: afe:Lferr_1828 polysaccharide deacetylase
YP_004783720.1	KEGG: afr:AFE_2160 hypothetical protein
YP_004783721.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afe:Lferr_1817 LysR family transcriptional regulator
YP_004783722.1	KEGG: afr:AFE_2157 von Willebrand factor type A domain protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A
YP_004783723.1	KEGG: afr:AFE_2156 CbbQ protein
YP_004783724.1	KEGG: afr:AFE_2155 ribulose bisphosphate carboxylase; HAMAP: Ribulose bisphosphate carboxylase; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal
YP_004783725.1	PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; KEGG: afr:AFE_2154 hydrogenase-4, I subunit
YP_004783726.1	PFAM: NADH-quinone oxidoreductase, subunit D; NADH:ubiquinone oxidoreductase, 30kDa subunit; KEGG: afr:AFE_2153 hydrogenase-4, G subunit
YP_004783727.1	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; KEGG: afr:AFE_2152 hydrogenase 4 subunit F
YP_004783728.1	KEGG: afr:AFE_2151 hydrogenase-4, E subunit
YP_004783729.1	KEGG: afr:AFE_2150 hydrogenase-4, C subunit
YP_004783730.1	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; KEGG: afr:AFE_2149 hydrogenase 4 subunit B
YP_004783731.1	KEGG: afr:AFE_2148 DNA-binding protein, putative; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3
YP_004783732.1	KEGG: afr:AFE_2147 GTP-binding protein YchF; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Protein of unknown function DUF933; GTP-binding protein, HSR1-related
YP_004783733.1	TIGRFAM: Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; KEGG: afr:AFE_2146 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase
YP_004783734.1	TIGRFAM: Ribosomal protein L25; HAMAP: 50S ribosomal protein L25; Ribosomal protein L25; KEGG: afr:AFE_2145 ribosomal protein L25; PFAM: Ribosomal protein L25, N-terminal
YP_004783735.1	KEGG: afr:AFE_2144 penicillin-binding protein 2, putative; TIGRFAM: Penicillin-binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain
YP_004783736.1	KEGG: afr:AFE_2143 hypothetical protein
YP_004783737.1	PFAM: Cell division protein ZapA-like; KEGG: afr:AFE_2142 hypothetical protein
YP_004783738.1	KEGG: afr:AFE_2140 5-formyltetrahydrofolate cyclo-ligase family protein; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase
YP_004783739.1	PFAM: Peptidase M61; KEGG: afr:AFE_2138 PDZ domain protein
YP_004783740.1	KEGG: afr:AFE_2137 hydrolase, isochorismatase family
YP_004783741.1	PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: afr:AFE_2136 protein-L-isoaspartate O-methyltransferase
YP_004783742.1	PFAM: Mammalian cell entry related; KEGG: afr:AFE_2135 mce-related protein
YP_004783743.1	PFAM: Protein of unknown function DUF330; KEGG: afr:AFE_2134 lipoprotein, putative
YP_004783744.1	PFAM: UspA; KEGG: afr:AFE_2133 universal stress family protein
YP_004783745.1	TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: Prolyl-tRNA synthetase; KEGG: afr:AFE_2132 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; YbaK/aminoacyl-tRNA synthetase associated region; Anticodon-binding
YP_004783747.1	PFAM: Acyltransferase 3; KEGG: dmr:Deima_1375 acyltransferase 3
YP_004783748.1	TIGRFAM: Bacterial protein export chaperone SecB; HAMAP: Bacterial protein export chaperone SecB; KEGG: afr:AFE_2127 preprotein translocase, SecB subunit; PFAM: Bacterial protein export chaperone SecB
YP_004783749.1	KEGG: afr:AFE_2126 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; HAMAP: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal
YP_004783750.1	PFAM: Squalene/phytoene synthase; KEGG: afr:AFE_2125 phytoene/squalene synthetase family protein
YP_004783751.1	KEGG: afr:AFE_2124 squalene-hopene cyclase; TIGRFAM: Hopene cyclase; Squalene cyclase; PFAM: Prenyltransferase/squalene oxidase
YP_004783752.1	KEGG: afr:AFE_2123 MTA/SAH nucleosidase, putative; TIGRFAM: Hopanoid-associated phosphorylase HpnG; PFAM: Nucleoside phosphorylase
YP_004783753.1	KEGG: afr:AFE_2122 hypothetical protein; TIGRFAM: Hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase
YP_004783754.1	KEGG: afr:AFE_2121 glycosyl transferase, group 2 family protein; TIGRFAM: Glycosyl transferase, family 2, hopene-associated, HpnI; PFAM: Glycosyl transferase, family 2
YP_004783755.1	TIGRFAM: Hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: Radical SAM; KEGG: afr:AFE_2120 radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB
YP_004783756.1	KEGG: afr:AFE_2119 hypothetical protein; TIGRFAM: Hopanoid biosynthesis associated protein HpnK; PFAM: YdjC-like protein
YP_004783757.1	TIGRFAM: Hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: afe:Lferr_1777 hopanoid biosynthesis associated RND transporter-like protein HpnN
YP_004783758.1	TIGRFAM: membrane protein; Lysylphosphatidylglycerol synthetase/UPF0104; KEGG: afe:Lferr_1776 membrane protein
YP_004783759.1	KEGG: afr:AFE_2115 radical SAM domain protein; TIGRFAM: Hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM
YP_004783760.1	KEGG: afr:AFE_2114 hypothetical protein; TIGRFAM: Hopanoid biosynthesis-associated membrane protein HpnM; PFAM: Toluene tolerance
YP_004783761.1	PFAM: VacJ-like lipoprotein; KEGG: afe:Lferr_1772 VacJ family lipoprotein
YP_004783762.1	TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; HAMAP: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; KEGG: afr:AFE_2112 glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit
YP_004783763.1	TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; KEGG: afr:AFE_2111 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase
YP_004783764.1	PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, central region; Asn/Gln amidotransferase; manually curated; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; KEGG: afr:AFE_2110 glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, B subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit
YP_004783765.1	KEGG: afe:Lferr_1768 hypothetical protein
YP_004783766.1	KEGG: afr:AFE_1433 ATP-dependent RNA helicase RhlE; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal
YP_004783767.1	TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein phoB; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; KEGG: afr:AFE_1434 DNA-binding response regulator PhoB; SMART: Signal transduction response regulator, receiver region
YP_004783768.1	TIGRFAM: Signal transduction histidine kinase, phosphate regulon sensor PhoR; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; KEGG: afr:AFE_1435 phosphate regulon sensor protein PhoR; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region
YP_004783769.1	KEGG: afr:AFE_1436 phosphate ABC transporter, periplasmic phosphate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1
YP_004783770.1	KEGG: afe:Lferr_1154 phosphate ABC transporter inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004783771.1	KEGG: afr:AFE_1438 phosphate ABC transporter, permease protein PstA; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004783772.1	TIGRFAM: Phosphate transport system permease protein 1; PFAM: ABC transporter-like; KEGG: afr:AFE_1439 phosphate ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004783773.1	KEGG: afr:AFE_1440 phosphate transport system protein PhoU; TIGRFAM: PhoU; PFAM: PhoU
YP_004783774.1	PFAM: Ppx/GppA phosphatase; KEGG: afr:AFE_1441 exopolyphosphatase
YP_004783775.1	PFAM: Glycosyl transferase, group 1; KEGG: afe:Lferr_1142 group 1 glycosyl transferase
YP_004783776.1	PFAM: SNARE associated Golgi protein; KEGG: afr:AFE_1443 membrane protein, DedA family
YP_004783777.1	KEGG: afr:AFE_1444 ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2
YP_004783778.1	TIGRFAM: Translation elongation factor EFTs/EF1B; HAMAP: Elongation factor Ts; KEGG: afr:AFE_1445 elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal
YP_004783779.1	KEGG: afr:AFE_1446 uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Aspartate/glutamate/uridylate kinase
YP_004783780.1	TIGRFAM: Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; KEGG: afr:AFE_1447 ribosome recycling factor; PFAM: Ribosome recycling factor
YP_004783781.1	TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; HAMAP: Undecaprenyl pyrophosphate synthase; KEGG: afe:Lferr_1164 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase-like
YP_004783782.1	PFAM: Phosphatidate cytidylyltransferase; KEGG: afr:AFE_1449 phosphatidate cytidylyltransferase
YP_004783783.1	TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: afr:AFE_1450 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal
YP_004783784.1	TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; KEGG: afr:AFE_1451 membrane-associated zinc metalloprotease, putative; SMART: PDZ/DHR/GLGF
YP_004783785.1	KEGG: afr:AFE_1452 outer membrane protein, OMP85 family; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number
YP_004783786.1	PFAM: Outer membrane chaperone Skp (OmpH); KEGG: afr:AFE_1453 outer membrane protein, OmpH family
YP_004783787.1	TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: afr:AFE_1454 UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat
YP_004783788.1	TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; HAMAP: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; KEGG: afr:AFE_1455 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ
YP_004783789.1	TIGRFAM: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; HAMAP: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: afr:AFE_1456 acyl-(acyl-carrier-protein)-UDP-N-acetylglucosamine acyltransferase; PFAM: Bacterial transferase hexapeptide repeat
YP_004783790.1	PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: afr:AFE_1457 oxidoreductase, NAD-binding
YP_004783791.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: afr:AFE_1458 pleiotropic regulatory protein, putative
YP_004783792.1	KEGG: afr:AFE_1459 lipid A disaccharide synthase LpxB; TIGRFAM: Glycosyl transferase, family 19; PFAM: Glycosyl transferase, family 19
YP_004783793.1	PFAM: Ribonuclease HII/HIII; KEGG: afr:AFE_1460 ribonuclease HII
YP_004783794.1	TIGRFAM: DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: afr:AFE_1461 DNA polymerase III, alpha subunit; SMART: Polymerase/histidinol phosphatase, N-terminal
YP_004783795.1	TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; KEGG: afr:AFE_1462 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region
YP_004783796.1	TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal; HAMAP: tRNA(Ile)-lysidine synthase; KEGG: afr:AFE_1464 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop; Lysidine-tRNA(Ile) synthetase, substrate-binding domain
YP_004783797.1	KEGG: afr:AFE_1463 dihydroorotase; TIGRFAM: Dihydroorotase multifunctional complex type; PFAM: Amidohydrolase 1
YP_004783798.1	TIGRFAM: RNA polymerase-binding, DksA; KEGG: afr:AFE_1465 DnaK suppressor protein
YP_004783799.1	KEGG: afr:AFE_1466 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase
YP_004783800.1	PFAM: Glycoside hydrolase, family 8; KEGG: aca:ACP_0076 endo-1,4-D-glucanase
YP_004783801.1	KEGG: pao:Pat9b_0116 cellulose synthase operon C domain-containing protein
YP_004783802.1	KEGG: met:M446_0104 hypothetical protein
YP_004783803.1	PFAM: Cellulose synthase BcsB, bacterial; KEGG: cse:Cseg_3479 cellulose synthase catalytic subunit
YP_004783804.1	KEGG: amc:MADE_00787 cellulose synthase catalytic subunit; TIGRFAM: Cellulose synthase catalytic subunit (UDP-forming); PFAM: Glycosyl transferase, family 2; Type IV pilus assembly PilZ
YP_004783805.1	KEGG: afr:AFE_0445 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; PFAM: Nucleotidyl transferase
YP_004783806.1	KEGG: afr:AFE_1834 hypothetical protein
YP_004783807.1	KEGG: har:HEAR0295 hypothetical protein
YP_004783808.1	PFAM: Circadian clock protein KaiC, central region; KaiA binding; KEGG: har:HEAR0296 protein kinase
YP_004783809.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: geb:GM18_2096 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted
YP_004783810.1	PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: Di-trans-poly-cis-decaprenylcistransferase
YP_004783811.1	KEGG: har:HEAR0296 protein kinase
YP_004783812.1	manually curated; KEGG: har:HEAR0295 hypothetical protein
YP_004783813.1	KEGG: mep:MPQ_2599 transcriptional regulator, crp/fnr family; PFAM: HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp
YP_004783814.1	KEGG: smt:Smal_0854 outer membrane autotransporter barrel domain-containing protein; TIGRFAM: Outer membrane autotransporter barrel; Autotransporter-associated beta strand repeat; PFAM: Autotransporter beta-domain
YP_004783815.1	SMART: HTH transcriptional regulator, ArsR; KEGG: afr:AFE_2026 transcriptional regulator, ArsR family
YP_004783817.1	KEGG: pna:Pnap_1316 cyclic nucleotide-binding domain-containing protein
YP_004783818.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; KEGG: geb:GM18_2096 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region
YP_004783819.1	TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; Signal transduction response regulator, receiver region; KEGG: sfr:Sfri_1019 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; PAS; Signal transduction response regulator, receiver region
YP_004783820.1	PFAM: Methyltransferase type 11; KEGG: afr:AFE_0759 methyltransferase, putative
YP_004783821.1	KEGG: afr:AFE_2420 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein
YP_004783822.1	KEGG: tkm:TK90_0757 beta-lactamase domain protein
YP_004783823.1	KEGG: afe:Lferr_2267 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004783824.1	PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_2642 hypothetical protein
YP_004783825.1	manually curated; KEGG: afr:AFE_2811 lipoprotein, putative
YP_004783826.1	KEGG: afr:AFE_2114 hypothetical protein; TIGRFAM: Hopanoid biosynthesis-associated membrane protein HpnM; PFAM: Toluene tolerance
YP_004783827.1	KEGG: hch:HCH_04387 hypothetical protein; HAMAP: Protein of unknown function DUF1328; PFAM: Protein of unknown function DUF1328
YP_004783828.1	PFAM: CsbD-like; KEGG: mms:mma_1042 hypothetical protein
YP_004783831.1	KEGG: nit:NAL212_1800 transposase mutator type
YP_004783832.1	SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; TIGRFAM: Excinuclease ABC, B subunit; KEGG: afr:AFE_0845 excinuclease ABC, B subunit; HAMAP: Excinuclease ABC, B subunit; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein
YP_004783833.1	PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; KEGG: afr:AFE_0846 alcohol dehydrogenase, zinc-containing
YP_004783834.1	TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: afr:AFE_0847 CTP synthetase; PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal
YP_004783835.1	TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; HAMAP: 3-deoxy-8-phosphooctulonate synthase; KEGG: afr:AFE_0848 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA
YP_004783836.1	TIGRFAM: Enolase; HAMAP: Enolase; KEGG: afr:AFE_0849 phosphopyruvate hydratase; PFAM: Enolase, C-terminal; Enolase, N-terminal
YP_004783837.1	PFAM: Septum formation initiator; KEGG: afr:AFE_0850 septum formation initiator family protein
YP_004783838.1	TIGRFAM: Translation elongation factor P; HAMAP: Translation elongation factor P; KEGG: afr:AFE_0851 translation elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor P/YeiP, central; Translation elongation factor, KOW-like
YP_004783839.1	PFAM: Protein of unknown function DUF971; KEGG: afr:AFE_0852 hypothetical protein
YP_004783840.1	SMART: Excinuclease ABC, C subunit, N-terminal; TIGRFAM: Excinuclease ABC, C subunit; KEGG: afe:Lferr_0979 excinuclease ABC subunit C; HAMAP: UvrABC system protein C; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein
YP_004783841.1	KEGG: afr:AFE_0854 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_004783843.1	PFAM: tRNA-dihydrouridine synthase; KEGG: afr:AFE_2027 tRNA-dihydrouridine synthase A
YP_004783844.1	KEGG: afr:AFE_2026 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004783845.1	KEGG: afr:AFE_2025 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: Glucose-6-phosphate dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase
YP_004783846.1	KEGG: afr:AFE_2024 6-phosphogluconate dehydrogenase-like protein; TIGRFAM: 6-phosphogluconate dehydrogenase related protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal
YP_004783847.1	TIGRFAM: Phosphoribosylglycinamide formyltransferase 2; HAMAP: Phosphoribosylglycinamide formyltransferase 2; KEGG: afr:AFE_2023 phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type
YP_004783848.1	PFAM: Aminotransferase, class I/II; KEGG: afr:AFE_2022 aspartate aminotransferase
YP_004783849.1	KEGG: pla:Plav_2096 lipid ABC transporter ATPase/inner membrane protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region; SMART: ATPase, AAA+ type, core
YP_004783850.1	KEGG: afe:Lferr_1685 hypothetical protein
YP_004783851.1	PFAM: Uncharacterised protein family UPF0145; KEGG: afr:AFE_2019 hypothetical protein
YP_004783852.1	PFAM: Uncharacterised protein family UPF0145; KEGG: afr:AFE_2018 hypothetical protein
YP_004783853.1	PFAM: PspA/IM30; KEGG: afr:AFE_2017 PspA/IM30 family
YP_004783854.1	PFAM: Protein of unknown function DUF1643; KEGG: mae:Maeo_0922 hypothetical protein
YP_004783855.1	PFAM: Protein of unknown function DUF202; KEGG: afr:AFE_1554 hypothetical protein
YP_004783856.1	KEGG: afe:Lferr_0031 hypothetical protein
YP_004783857.1	KEGG: amv:ACMV_33690 hypothetical protein
YP_004783858.1	KEGG: tdn:Suden_1309 hypothetical protein
YP_004783859.1	KEGG: afr:AFE_0043 periplasmic solute-binding protein, putative
YP_004783860.1	PFAM: TQO small subunit DoxD; KEGG: afe:Lferr_0045 TQO small subunit DoxD
YP_004783861.1	PFAM: Protein of unknown function methylase putative; KEGG: afe:Lferr_1014 methyltransferase small
YP_004783862.1	TIGRFAM: Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; HAMAP: Methylthioribose-1-phosphate isomerase; KEGG: afr:AFE_0893 translation initiation factor, putative, aIF-2BI family; PFAM: Initiation factor 2B related
YP_004783863.1	TIGRFAM: DNA gyrase, subunit A; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; KEGG: afr:AFE_0894 DNA gyrase, A subunit; SMART: DNA topoisomerase, type IIA, subunit A or C-terminal
YP_004783864.1	TIGRFAM: Phosphoserine aminotransferase; HAMAP: Phosphoserine aminotransferase; KEGG: afr:AFE_0895 phosphoserine aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_004783865.1	KEGG: afr:AFE_0897 chorismate mutase/prephenate dehydratase; TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT
YP_004783866.1	TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: afr:AFE_0898 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II
YP_004783867.1	KEGG: afr:AFE_0899 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2; PFAM: DAHP synthetase I/KDSA
YP_004783868.1	PFAM: Prephenate dehydrogenase; KEGG: afr:AFE_0900 prephenate dehydrogenase
YP_004783869.1	TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; KEGG: afr:AFE_0901 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core
YP_004783870.1	TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: afr:AFE_0902 cytidylate kinase; PFAM: Cytidylate kinase region
YP_004783871.1	KEGG: afr:AFE_0903 ribosomal protein S1; TIGRFAM: Ribosomal S1 synthesis/modification protein; PFAM: Ribosomal protein S1, RNA binding domain
YP_004783872.1	TIGRFAM: Integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein; KEGG: afr:AFE_0905 integration host factor, beta subunit; SMART: Histone-like bacterial DNA-binding protein
YP_004783873.1	KEGG: afe:Lferr_1027 hypothetical protein
YP_004783874.1	KEGG: afr:AFE_0907 orotidine 5`-phosphate decarboxylase; TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 1, core; PFAM: Orotidine 5'-phosphate decarboxylase, core
YP_004783875.1	TIGRFAM: Orotate phosphoribosyltransferase, Thermus type; HAMAP: Orotate phosphoribosyltransferase; KEGG: afe:Lferr_1029 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase
YP_004783876.1	TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: afr:AFE_0909 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type; Trigger factor, C-terminal, bacterial
YP_004783877.1	TIGRFAM: Peptidase S14, ClpP; HAMAP: ATP-dependent Clp protease proteolytic subunit; KEGG: afr:AFE_0910 ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: Peptidase S14, ClpP
YP_004783878.1	SMART: ATPase, AAA+ type, core; TIGRFAM: Clp protease, ATP-binding subunit ClpX; KEGG: afr:AFE_0911 ATP-dependent Clp protease, ATP-binding subunit ClpX; HAMAP: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase associated with various cellular activities, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal
YP_004783879.1	TIGRFAM: Peptidase S16, ATP-dependent protease La; PFAM: Peptidase S16, lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core; KEGG: afe:Lferr_1033 ATP-dependent protease La; SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core
YP_004783880.1	KEGG: afr:AFE_0914 DNA-binding protein HU; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein
YP_004783881.1	KEGG: afe:Lferr_1036 hypothetical protein
YP_004783882.1	PFAM: Protein of unknown function DUF2147; KEGG: afr:AFE_1867 hypothetical protein
YP_004783883.1	TIGRFAM: Peptidase S24, LexA repressor; HAMAP: LexA repressor; KEGG: afr:AFE_1868 LexA repressor; PFAM: LexA DNA-binding region; Peptidase S24/S26A/S26B, conserved region
YP_004783884.1	KEGG: afe:Lferr_1547 hypothetical protein
YP_004783885.1	KEGG: afr:AFE_1873 aminopeptidase N; TIGRFAM: Peptidase M1, alanyl aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal
YP_004783887.1	PFAM: Adenylate cyclase; CHAD; KEGG: afr:AFE_1874 adenylate cyclase
YP_004783888.1	KEGG: afr:AFE_1875 ParA-like protein
YP_004783889.1	TIGRFAM: polyphosphate kinase 1; HAMAP: Polyphosphate kinase; KEGG: afr:AFE_1876 polyphosphate kinase; PFAM: Polyphosphate kinase
YP_004783890.1	KEGG: afr:AFE_1877 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain
YP_004783891.1	PFAM: Acriflavin resistance protein; KEGG: afr:AFE_1878 transporter, AcrB/AcrD/AcrF family
YP_004783892.1	KEGG: afr:AFE_1879 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004783893.1	KEGG: afr:AFE_1880 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein
YP_004783894.1	PFAM: Tetratricopeptide TPR2; KEGG: afr:AFE_1881 hypothetical protein
YP_004783895.1	TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: afr:AFE_1882 maf protein; PFAM: Maf-like protein
YP_004783896.1	KEGG: afr:AFE_1883 phosphoenolpyruvate carboxylase; HAMAP: Phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase
YP_004783897.1	TIGRFAM: Host factor Hfq; HAMAP: Protein hfq; KEGG: afr:AFE_1884 RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core
YP_004783898.1	manually curated; TIGRFAM: GTP-binding protein, HflX; KEGG: afr:AFE_1885 GTP-binding protein HflX; PFAM: GTP-binding protein, HSR1-related
YP_004783899.1	TIGRFAM: HflK; PFAM: Band 7 protein; KEGG: afr:AFE_1886 HflK protein; SMART: Band 7 protein
YP_004783900.1	TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: afr:AFE_1887 HflC protein; SMART: Band 7 protein
YP_004783901.1	KEGG: afr:AFE_1888 ATP phosphoribosyltransferase regulatory subunit; HAMAP: ATP phosphoribosyltransferase regulatory subunit; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region
YP_004783902.1	SMART: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; KEGG: afr:AFE_1889 adenylosuccinate synthetase; HAMAP: Adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase
YP_004783903.1	KEGG: afr:AFE_2732 iron oxidase
YP_004783904.1	TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; PFAM: Ribonuclease II/R; Ribonuclease B, OB region N-terminal; Ribonuclease R winged-helix domain; Ribosomal protein S1, RNA binding domain; KEGG: afr:AFE_1891 ribonuclease R; SMART: Cold shock protein
YP_004783905.1	KEGG: afr:AFE_1892 hypothetical protein; TIGRFAM: polyphosphate kinase 2; PFAM: Polyphosphate kinase 2
YP_004783906.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: afr:AFE_1893 dihydrolipoamide dehydrogenase
YP_004783907.1	PFAM: Molybdopterin binding; KEGG: afr:AFE_1894 hypothetical protein
YP_004783908.1	KEGG: afr:AFE_1896 phosphoribosylglycinamide formyltransferase; TIGRFAM: Phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal
YP_004783909.1	KEGG: afe:Lferr_1573 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein
YP_004783910.1	PFAM: Manganese/iron superoxide dismutase, C-terminal; KEGG: afr:AFE_1898 superoxide dismutase
YP_004783911.1	KEGG: afr:AFE_1900 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_004783912.1	KEGG: afe:Lferr_1576 DnaA regulatory inactivator Hda; TIGRFAM: Chromosomal replication control, regulator Hda; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda)
YP_004783913.1	KEGG: afe:Lferr_1577 ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related
YP_004783914.1	PFAM: Protein of unknown function DUF177; KEGG: afr:AFE_1903 hypothetical protein
YP_004783915.1	TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: afr:AFE_1904 50S ribosomal protein L32; PFAM: Ribosomal protein L32p
YP_004783916.1	TIGRFAM: Phospholipid biosynthesis protein, PlsX like; HAMAP: Phospholipid biosynthesis protein, PlsX like; KEGG: afr:AFE_1905 fatty acid/phospholipid synthesis protein PlsX; PFAM: Fatty acid synthesis plsX protein
YP_004783917.1	TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: afr:AFE_1906 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III
YP_004783918.1	KEGG: afr:AFE_1907 malonyl CoA-acyl carrier protein transacylase; TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase
YP_004783919.1	KEGG: afr:AFE_1908 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR
YP_004783920.1	TIGRFAM: Acyl carrier protein (ACP); HAMAP: Acyl carrier protein (ACP); KEGG: afr:AFE_1909 acyl carrier protein; PFAM: Phosphopantetheine-binding
YP_004783921.1	KEGG: afr:AFE_1910 3-oxoacyl-(acyl-carrier-protein) synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal
YP_004783922.1	KEGG: afr:AFE_1911 4-amino-4-deoxychorismate lyase, putative; TIGRFAM: Aminodeoxychorismate lyase, class IV; PFAM: Aminotransferase, class IV
YP_004783923.1	KEGG: afe:Lferr_1587 aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family YceG-like; PFAM: Uncharacterised protein family YceG-like
YP_004783924.1	TIGRFAM: Thymidylate kinase; HAMAP: Thymidylate kinase; KEGG: afr:AFE_1913 thymidylate kinase; PFAM: Thymidylate kinase-like
YP_004783925.1	KEGG: afr:AFE_1914 DNA polymerase III, delta prime subunit
YP_004783926.1	PFAM: Type IV pilus assembly PilZ; KEGG: afr:AFE_1915 type IV pilus assembly protein PilZ, putative
YP_004783928.1	KEGG: rrs:RoseRS_1787 hypothetical protein
YP_004783929.1	PFAM: YcfA-like; KEGG: cph:Cpha266_1441 YcfA family protein
YP_004783930.1	PFAM: Protein of unknown function DUF302; KEGG: aca:ACP_2485 hypothetical protein
YP_004783931.1	KEGG: eba:ebA6282 nitrate reductase, gamma subunit; TIGRFAM: Nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit
YP_004783932.1	KEGG: tbd:Tbd_1405 respiratory nitrate reductase chaperone NarJ; TIGRFAM: Nitrate reductase, delta subunit; PFAM: Nitrate reductase, delta subunit
YP_004783933.1	TIGRFAM: Nitrate reductase, beta subunit; KEGG: tbd:Tbd_1404 respiratory nitrate reductase beta subunit
YP_004783934.1	KEGG: eba:ebA6286 nitrate reductase, alpha chain; TIGRFAM: Nitrate reductase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region
YP_004783935.1	PFAM: Major facilitator superfamily MFS-1; KEGG: amv:ACMV_16320 putative major facilitator superfamily transporter
YP_004783936.1	PFAM: Haemerythrin/HHE cation-binding motif; KEGG: bvi:Bcep1808_6183 hemerythrin HHE cation binding domain-containing protein
YP_004783937.1	PFAM: Protein of unknown function DUF1971; KEGG: afr:AFE_1844 ferredoxin
YP_004783938.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: nwa:Nwat_0016 glutathione S-transferase domain-containing protein
YP_004783939.1	KEGG: afr:AFE_1845 hypothetical protein
YP_004783940.1	PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: afr:AFE_1847 C4-dicarboxylate transporter/malic acid transport protein, putative
YP_004783941.1	KEGG: afr:AFE_1028 hypothetical protein
YP_004783942.1	KEGG: afr:AFE_1545 molybdenum-pterin binding protein; TIGRFAM: Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1
YP_004783943.1	KEGG: afr:AFE_1497 hypothetical protein
YP_004783944.1	KEGG: afr:AFE_1997 autoinducer-binding transcriptional regulator, LuxR family; PFAM: Autoinducer-binding; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal
YP_004783945.1	KEGG: azo:azo2571 hypothetical protein
YP_004783946.1	KEGG: glo:Glov_0119 hypothetical protein
YP_004783947.1	TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain; KEGG: mag:amb4010 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004783948.1	PFAM: Protein of unknown function DUF6, transmembrane; KEGG: ypy:YPK_1524 hypothetical protein
YP_004783949.1	KEGG: btb:BMB171_C1784 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004783950.1	KEGG: rah:Rahaq_4788 transcriptional regulator
YP_004783951.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: afe:Lferr_1669 hypothetical protein
YP_004783952.1	KEGG: mci:Mesci_1735 hypothetical protein; HAMAP: UPF0310 protein; PFAM: Uncharacterised protein family UPF0310
YP_004783953.1	PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pol:Bpro_2654 TetR family transcriptional regulator
YP_004783954.1	PFAM: Protein of unknown function DUF1348; KEGG: aba:Acid345_2217 hypothetical protein
YP_004783955.1	PFAM: Major facilitator superfamily MFS-1; KEGG: sil:SPO3481 hypothetical protein
YP_004783956.1	TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: pfl:PFL_0930 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II
YP_004783957.1	KEGG: afr:AFE_2803 FMN reductase, NADPH-dependent; manually curated; PFAM: NADPH-dependent FMN reductase
YP_004783958.1	PFAM: Polyketide cyclase/dehydrase; KEGG: afr:AFE_2804 hypothetical protein
YP_004783960.1	PFAM: Negative transcriptional regulator; KEGG: afr:AFE_2006 transcriptional regulator, putative
YP_004783961.1	PFAM: ThiJ/PfpI; GCN5-related N-acetyltransferase; KEGG: afr:AFE_2005 isonitrile hydratase, putative
YP_004783962.1	KEGG: gca:Galf_1512 phenazine biosynthesis protein PhzF family; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein
YP_004783963.1	KEGG: tin:Tint_2008 glutathione-dependent formaldehyde-activating GFA; manually curated; PFAM: Glutathione-dependent formaldehyde-activating, GFA
YP_004783964.1	TIGRFAM: Peptidase A8, signal peptidase II; HAMAP: Peptidase A8, signal peptidase II; KEGG: dsh:Dshi_0359 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II
YP_004783965.1	KEGG: xcv:XCVd0102 hypothetical protein
YP_004783967.1	KEGG: rpx:Rpdx1_0487 HipA N-terminal domain-containing protein; TIGRFAM: HipA, N-terminal; PFAM: HipA-like, C-terminal; HipA-like, N-terminal
YP_004783968.1	KEGG: hba:Hbal_3181 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3
YP_004783969.1	TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase, AAA-type, core; KEGG: afr:AFE_1919 DNA polymerase III, subunits gamma and tau; SMART: ATPase, AAA+ type, core
YP_004783970.1	TIGRFAM: Uncharacterised protein family UPF0133; HAMAP: Uncharacterised protein family UPF0133; KEGG: afr:AFE_1920 hypothetical protein; PFAM: Uncharacterised protein family UPF0133
YP_004783971.1	KEGG: afr:AFE_1921 recombination protein RecR; PFAM: Toprim domain; Zinc finger C4-type, RecR; manually curated; TIGRFAM: RecR protein; SMART: Toprim domain, subgroup; HAMAP: Recombination protein recR
YP_004783972.1	PFAM: Ammonium transporter; KEGG: afr:AFE_1922 ammonium transporter family protein
YP_004783973.1	KEGG: afr:AFE_1923 YjeF-related protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; PFAM: Uncharacterised protein family, carbohydrate kinase-related
YP_004783974.1	KEGG: afr:AFE_1924 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III
YP_004783975.1	KEGG: afr:AFE_1925 CBS domain protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core
YP_004783976.1	KEGG: afr:AFE_1926 conserved hypothetical protein TIGR00150; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria
YP_004783977.1	TIGRFAM: DNA mismatch repair protein, N-terminal; HAMAP: DNA mismatch repair protein mutL; KEGG: afr:AFE_1927 mismatch repair protein MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATP-binding region, ATPase-like
YP_004783978.1	TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase; KEGG: afr:AFE_1928 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase
YP_004783979.1	HAMAP: Nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase, core; KEGG: afr:AFE_1929 nucleoside diphosphate kinase; SMART: Nucleoside diphosphate kinase, core
YP_004783980.1	TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; KEGG: afe:Lferr_1602 radical SAM enzyme, Cfr family; PFAM: Radical SAM
YP_004783981.1	KEGG: afe:Lferr_1603 type IV pilus biogenesis/stability protein PilW; TIGRFAM: Pilus biogenesis/stability type IV, PilW; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2
YP_004783982.1	SMART: Helix-turn-helix type 3; KEGG: afe:Lferr_1604 XRE family transcriptional regulator
YP_004783983.1	TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; KEGG: afr:AFE_1933 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type
YP_004783984.1	TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: afr:AFE_1934 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region
YP_004783985.1	KEGG: afr:AFE_1935 hypothetical protein
YP_004783986.1	TIGRFAM: Outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat; KEGG: afr:AFE_1936 PQQ enzyme repeat domain protein; SMART: Pyrrolo-quinoline quinone beta-propeller repeat
YP_004783987.1	TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; HAMAP: GTP-binding, EngA; KEGG: afr:AFE_1937 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related
YP_004783988.1	KEGG: afr:AFE_1938 hypothetical protein
YP_004783989.1	KEGG: afr:AFE_2314 phosphohistidine phosphatase SixA; TIGRFAM: Phosphohistidine phosphatase SixA, subgroup; PFAM: Phosphoglycerate mutase
YP_004783990.1	KEGG: afr:AFE_2508 hypothetical protein
YP_004783991.1	KEGG: afe:Lferr_1611 phosphate ABC transporter periplasmic phosphate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1
YP_004783992.1	KEGG: afr:AFE_1940 phosphate ABC transporter, permease protein PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004783993.1	KEGG: afr:AFE_1941 phosphate ABC transporter, permease protein, putative; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component
YP_004783994.1	PFAM: Haemerythrin/HHE cation-binding motif; KEGG: afr:AFE_1942 hypothetical protein
YP_004783995.1	KEGG: afr:AFE_2429 [Ni/Fe] hydrogenase, b-type cytochrome subunit, putative
YP_004783996.1	PFAM: Carbohydrate-selective porin OprB; KEGG: afr:AFE_2250 carbohydrate-selective porin, OprB family
YP_004783997.1	PFAM: Major intrinsic protein; KEGG: afr:AFE_0154 MIP family channel protein
YP_004783998.1	TIGRFAM: ATPase, anion-transporting; PFAM: ATPase, anion-transporting; KEGG: psa:PST_0237 arsenical pump-driving ATPase; SMART: ATPase, AAA+ type, core
YP_004783999.1	PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: psa:PST_0238 arsenic operon regulator
YP_004784000.1	KEGG: afr:AFE_2860 arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight
YP_004784001.1	SMART: HTH transcriptional regulator, ArsR; KEGG: afr:AFE_2859 transcriptional regulator, ArsR
YP_004784002.1	KEGG: tin:Tint_1169 diguanylate cyclase/phosphodiesterase with GAF sensor
YP_004784003.1	PFAM: PilT protein, N-terminal; KEGG: gob:Gobs_1669 PilT protein domain-containing protein
YP_004784004.1	PFAM: Protein of unknown function DUF2191; KEGG: tmt:Tmath_2080 protein of unknown function DUF2191
YP_004784006.1	TIGRFAM: Prevent-host-death protein; KEGG: app:CAP2UW1_3555 prevent-host-death family protein
YP_004784007.1	PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: plu:plu0253 hypothetical protein
YP_004784008.1	PFAM: PemK-like protein; KEGG: rpf:Rpic12D_5124 transcriptional modulator of MazE/toxin, MazF
YP_004784009.1	PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: rpf:Rpic12D_5125 transcriptional regulator/antitoxin, MazE
YP_004784010.1	KEGG: hna:Hneap_1625 addiction module toxin, RelE/StbE family; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system
YP_004784011.1	KEGG: hna:Hneap_1626 CopG domain protein DNA-binding domain protein
YP_004784012.1	PFAM: Protein of unknown function DUF1778; KEGG: azo:azo2026 hypothetical protein
YP_004784013.1	PFAM: CopG-like DNA-binding; KEGG: xfa:XF2075 hypothetical protein
YP_004784014.1	PFAM: Protein of unknown function DUF2283; KEGG: tbd:Tbd_0450 hypothetical protein
YP_004784015.1	KEGG: tau:Tola_1305 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF1778
YP_004784016.1	KEGG: llo:LLO_2580 type 4 fimbrial biogenesis protein PilY1
YP_004784018.1	KEGG: afr:AFE_0969 type IV pilin, putative
YP_004784019.1	TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: tgr:Tgr7_3228 Tfp pilus assembly protein PilV-like protein
YP_004784020.1	PFAM: Type II secretion system F domain; KEGG: afr:AFE_0972 type IV pilus biogenesis protein PilC
YP_004784021.1	KEGG: afr:AFE_1714 hypothetical protein
YP_004784024.1	KEGG: afr:AFE_0416 pilin, putative
YP_004784025.1	PFAM: Sel1-like; KEGG: afr:AFE_0409 hypothetical protein
YP_004784026.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: abo:ABO_2397 dioxygenase ferredoxin reductase component
YP_004784027.1	KEGG: afe:Lferr_1541 hypothetical protein
YP_004784028.1	KEGG: npu:Npun_F6102 hypothetical protein
YP_004784029.1	PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: cph:Cpha266_2270 transposase, IS204/IS1001/IS1096/IS1165 family protein
YP_004784030.1	KEGG: aav:Aave_2943 hypothetical protein
YP_004784031.1	TIGRFAM: Protein of unknown function DUF132; PFAM: PilT protein, N-terminal; KEGG: aav:Aave_2942 PilT domain-containing protein; SMART: Nucleotide binding protein, PINc
YP_004784032.1	KEGG: rpf:Rpic12D_0692 hypothetical protein
YP_004784033.1	KEGG: bxe:Bxe_A1174 AbrB family transcriptional regulator; TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted
YP_004784034.1	PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: app:CAP2UW1_4523 transcriptional regulator, AbrB family
YP_004784035.1	KEGG: xcb:XC_2599 hypothetical protein
YP_004784036.1	HAMAP: Chaperone protein htpG; PFAM: Heat shock protein Hsp90, C-terminal; ATP-binding region, ATPase-like; KEGG: afr:AFE_3158 heat shock protein HtpG; SMART: ATP-binding region, ATPase-like
YP_004784037.1	TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; KEGG: afr:AFE_1754 virulence-associated protein, putative; SMART: Helix-turn-helix type 3
YP_004784038.1	PFAM: Plasmid maintenance system killer; KEGG: neu:NE1109 hypothetical protein
YP_004784040.1	PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: acl:ACL_0438 Fic-domain-containing protein
YP_004784041.1	PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: vpe:Varpa_5326 filamentation induced by camp protein fic
YP_004784042.1	TIGRFAM: Diguanylate cyclase, predicted; PAS; Twin-arginine translocation pathway, signal sequence; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; PAS fold-4; KEGG: afe:Lferr_2664 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif
YP_004784043.1	PFAM: Proto-chlorophyllide reductase 57kDa subunit; KEGG: afr:AFE_0095 hypothetical protein
YP_004784044.1	PFAM: Type IV pilus assembly PilZ
YP_004784046.1	KEGG: tsa:AciPR4_1393 cellulose synthase operon protein YhjQ
YP_004784047.1	KEGG: aca:ACP_0075 cellulose synthase I; TIGRFAM: Cellulose synthase catalytic subunit (UDP-forming); PFAM: Cellulose synthase BcsB, bacterial; Glycosyl transferase, family 2; Type IV pilus assembly PilZ
YP_004784048.1	PFAM: Glycoside hydrolase, family 8; KEGG: aca:ACP_0076 endo-1,4-D-glucanase
YP_004784049.1	PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: tsa:AciPR4_1397 cellulose synthase operon C domain-containing protein
YP_004784050.1	PFAM: Cellulose synthase operon C, C-terminal; KEGG: vpe:Varpa_3211 cellulose synthase operon c domain protein
YP_004784051.1	PFAM: Crotonase, core; KEGG: tgr:Tgr7_0083 enoyl-CoA hydratase
YP_004784052.1	KEGG: tgr:Tgr7_0082 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region
YP_004784053.1	KEGG: tbd:Tbd_2670 metal dependent phosphohydrolase, HD region; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region
YP_004784055.1	KEGG: amc:MADE_00787 cellulose synthase catalytic subunit; TIGRFAM: Cellulose synthase catalytic subunit (UDP-forming); PFAM: Glycosyl transferase, family 2; Type IV pilus assembly PilZ
YP_004784056.1	PFAM: Cellulose synthase BcsB, bacterial; KEGG: amc:MADE_00788 CelB protein
YP_004784057.1	KEGG: met:M446_0104 hypothetical protein
YP_004784058.1	PFAM: Glycoside hydrolase, family 8; KEGG: aca:ACP_0076 endo-1,4-D-glucanase
YP_004784059.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: afr:AFE_1712 diguanylate cyclase, putative; SMART: Diguanylate cyclase, predicted
YP_004784060.1	PFAM: Protein of unknown function DUF481; KEGG: afr:AFE_2054 hypothetical protein
YP_004784061.1	TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, QueF; HAMAP: Nitrile oxidoreductase, NADPH-dependent, QueF; KEGG: afr:AFE_0752 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase
YP_004784062.1	KEGG: afe:Lferr_0900 chromosome segregation protein SMC; TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC protein, N-terminal
YP_004784063.1	TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: afr:AFE_0756 HAD-superfamily subfamily IB hydrolase, TIGR01490
YP_004784064.1	SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; TIGRFAM: NAD-dependent DNA ligase; KEGG: afr:AFE_0757 DNA ligase, NAD-dependent; HAMAP: DNA ligase; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT
YP_004784065.1	TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; HAMAP: ATPase, F1 complex, delta/epsilon subunit; KEGG: afr:AFE_0758 ATP synthase F1, epsilon subunit, putative; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal
YP_004784066.1	PFAM: Protein of unknown function DUF202; KEGG: cno:NT01CX_0294 hypothetical protein
YP_004784067.1	KEGG: hypothetical protein
YP_004784068.1	KEGG: afr:AFE_1467 transcriptional regulator, Fur family
YP_004784069.1	PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: afr:AFE_1468 antioxidant, AhpC/Tsa family
YP_004784070.1	KEGG: afr:AFE_1469 PhoH family protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc
YP_004784071.1	TIGRFAM: Arginine decarboxylase; HAMAP: Biosynthetic arginine decarboxylase; KEGG: afr:AFE_1471 arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2
YP_004784072.1	KEGG: afr:AFE_1470 hypothetical protein
YP_004784073.1	PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: afr:AFE_1472 fumarylacetoacetate hydrolase family protein
YP_004784074.1	KEGG: afr:AFE_1475 hypothetical protein
YP_004784075.1	KEGG: afr:AFE_1476 hypothetical protein
YP_004784076.1	PFAM: Sucraseferredoxin-like; KEGG: azo:azo3368 ferredoxin 2Fe-2S protein
YP_004784077.1	KEGG: afr:AFE_1477 ferredoxin-like protein
YP_004784078.1	PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: afr:AFE_1478 FixC protein
YP_004784079.1	PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; KEGG: afr:AFE_1479 electron transfer flavoprotein, alpha subunit
YP_004784080.1	PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; KEGG: afr:AFE_1480 electron transfer flavoprotein, beta subunit
YP_004784081.1	PFAM: Amine oxidase; KEGG: mca:MCA2837 amine oxidase
YP_004784083.1	PFAM: Bacterial extracellular solute-binding, family 1; KEGG: afr:AFE_1498 ABC transporter, periplasmic substrate-binding protein, putative
YP_004784084.1	KEGG: afe:Lferr_1217 AAA ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core
YP_004784085.1	KEGG: afr:AFE_1500 hypothetical protein
YP_004784086.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: mca:MCA0225 Rieske 2Fe-2S family protein
YP_004784087.1	KEGG: azc:AZC_3432 hypothetical protein
YP_004784088.1	KEGG: afr:AFE_1501 hypothetical protein; TIGRFAM: Regulatory protein, FmdB, putative; PFAM: Regulatory protein, FmdB, putative
YP_004784089.1	KEGG: afr:AFE_1502 ankyrin repeat protein/rhodanese-like domain protein; PFAM: Rhodanese-like; Ankyrin repeat; SMART: Rhodanese-like; Ankyrin repeat
YP_004784090.1	PFAM: Nitroreductase-like; KEGG: afr:AFE_1503 nitroreductase, putative
YP_004784091.1	KEGG: afr:AFE_1504 NifW protein, putative; HAMAP: Nitrogenase-stabilizing/protective protein nifW; PFAM: Nitrogen fixation protein NifW
YP_004784092.1	KEGG: afr:AFE_1505 serine O-acetyltransferase; TIGRFAM: Serine O-acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat
YP_004784093.1	KEGG: afr:AFE_1506 homocitrate synthase; TIGRFAM: Homocitrate synthase NifV-type; PFAM: Pyruvate carboxyltransferase
YP_004784094.1	KEGG: afr:AFE_1507 cysteine desulfurase; TIGRFAM: Cysteine desulfurase, NifS, bacterial/archaeal; PFAM: Aminotransferase, class V/Cysteine desulfurase
YP_004784095.1	KEGG: afr:AFE_1508 nitrogen fixation protein NifU; TIGRFAM: NIF system FeS cluster assembly, NifU; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; BFD-like [2Fe-2S]-binding region; NIF system FeS cluster assembly, NifU, C-terminal
YP_004784096.1	KEGG: afr:AFE_1509 iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis
YP_004784097.1	KEGG: afr:AFE_1510 hypothetical protein
YP_004784098.1	PFAM: NifQ; KEGG: afr:AFE_1511 nitrogen fixation protein NifQ
YP_004784099.1	KEGG: afr:AFE_1512 ferredoxin; TIGRFAM: Ferredoxin III 4[4Fe-4S], nif-specific; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup
YP_004784100.1	PFAM: Uncharacterised protein family UPF0437; KEGG: afr:AFE_1513 hypothetical protein
YP_004784101.1	KEGG: afr:AFE_1514 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0460; PFAM: Uncharacterised protein family UPF0460
YP_004784102.1	KEGG: afr:AFE_1515 nitrogen fixation protein NifX; TIGRFAM: Nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis
YP_004784103.1	KEGG: afr:AFE_1516 nitrogenase molybdenum-cofactor biosynthesis protein NifN; TIGRFAM: Nitrogenase molybdenum-iron cofactor biosynthesis protein; PFAM: Nitrogenase/oxidoreductase, component 1
YP_004784104.1	KEGG: afr:AFE_1517 nitrogenase molybdenum-cofactor biosynthesis protein NifE; TIGRFAM: Nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: Nitrogenase/oxidoreductase, component 1
YP_004784105.1	PFAM: Ferredoxin; KEGG: afr:AFE_1518 ferredoxin, putative
YP_004784106.1	PFAM: Ferredoxin; KEGG: afr:AFE_1519 ferredoxin
YP_004784107.1	KEGG: afr:AFE_1520 nitrogenase molybdenum-iron protein, beta subunit; TIGRFAM: Nitrogenase molybdenum-iron protein beta chain; PFAM: Nitrogenase/oxidoreductase, component 1
YP_004784108.1	KEGG: afr:AFE_1521 nitrogenase molybdenum-iron protein, alpha subunit; TIGRFAM: Nitrogenase molybdenum-iron protein alpha chain; Nitrogenase component 1, alpha chain; PFAM: Nitrogenase/oxidoreductase, component 1
YP_004784109.1	TIGRFAM: Nitrogenase iron protein NifH; HAMAP: Nitrogenase iron protein NifH; KEGG: afr:AFE_1522 nitrogenase reductase; PFAM: Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL
YP_004784110.1	KEGG: afr:AFE_1523 response regulator
YP_004784111.1	PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: afr:AFE_1524 NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase
YP_004784112.1	KEGG: afr:AFE_1525 ADP-ribosyl-[dinitrogen reductase] hydrolase; TIGRFAM: ADP-ribosyl-dinitrogen reductase hydrolase; Nitrogenase-associated protein; PFAM: ADP-ribosylation/Crystallin J1; Arsenate reductase-like
YP_004784113.1	TIGRFAM: Nif-specific regulatory protein; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; KEGG: afr:AFE_1527 Nif-specific regulatory protein; SMART: GAF; ATPase, AAA+ type, core
YP_004784114.1	KEGG: afe:Lferr_1245 nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: Nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; Radical SAM
YP_004784115.1	PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: afr:AFE_1530 ferredoxin
YP_004784116.1	KEGG: afr:AFE_1531 iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis
YP_004784117.1	KEGG: afr:AFE_1532 hypothetical protein
YP_004784118.1	KEGG: afr:AFE_1533 hypothetical protein
YP_004784119.1	PFAM: LRV FeS4 cluster; Leucine rich repeat variant; KEGG: afr:AFE_1534 leucine rich repeat protein
YP_004784120.1	PFAM: NifZ; KEGG: afe:Lferr_1251 NifZ family protein
YP_004784121.1	PFAM: NifZ; KEGG: afe:Lferr_1252 NifZ family protein
YP_004784122.1	PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: afr:AFE_1537 cysteine desulfurase
YP_004784123.1	KEGG: afr:AFE_1538 nitrogen fixation protein, putative; TIGRFAM: NifT/FixU; PFAM: NifT/FixU
YP_004784124.1	KEGG: afr:AFE_1539 hypothetical protein
YP_004784125.1	PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: afr:AFE_1540 aminotransferase, DegT/DnrJ/EryC1/StrS family
YP_004784126.1	PFAM: Ferredoxin; KEGG: afr:AFE_1541 ferredoxin, putative
YP_004784127.1	KEGG: afr:AFE_1542 hypothetical protein
YP_004784128.1	KEGG: afr:AFE_1543 hypothetical protein
YP_004784129.1	KEGG: afr:AFE_3240 Rrf2 family protein; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2
YP_004784130.1	KEGG: afe:Lferr_1260 ModD protein; TIGRFAM: Putative molybdenum utilization protein ModD; PFAM: Quinolinate phosphoribosyl transferase
YP_004784131.1	PFAM: Aldehyde dehydrogenase; KEGG: afr:AFE_1546 succinate-semialdehyde dehydrogenase, putative
YP_004784132.1	PFAM: Globin, truncated bacterial-like; KEGG: afr:AFE_1548 heme-binding protein, putative
YP_004784133.1	PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_1547 hypothetical protein
YP_004784134.1	PFAM: Mechanosensitive ion channel MscS; KEGG: afr:AFE_1549 hypothetical protein
YP_004784135.1	PFAM: Carbohydrate/purine kinase; KEGG: afr:AFE_1550 carbohydrate kinase, PfkB family
YP_004784136.1	TIGRFAM: Sucrose-phosphate synthase, glycosyltransferase region; HAD-superfamily hydrolase, subfamily IIB; Sucrose phosphate synthase, sucrose phosphatase-like region; KEGG: afr:AFE_1551 sucrose phosphate synthase; PFAM: Sucrose-6F-phosphate phosphohydrolase, plant/cyanobacteria; Glycosyl transferase, group 1
YP_004784137.1	PFAM: Sucrose synthase; Glycosyl transferase, group 1; KEGG: afr:AFE_1552 sucrose synthase, putative
YP_004784138.1	PFAM: RES; KEGG: acm:AciX9_3442 RES domain protein
YP_004784139.1	KEGG: acm:AciX9_3443 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02293; PFAM: Conserved hypothetical protein CHP02293
YP_004784140.1	KEGG: afr:AFE_2799 transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II; PFAM: AlkA, N-terminal; Ada DNA repair, metal-binding; Helix-turn-helix, AraC type; HhH-GPD domain; SMART: Helix-turn-helix, AraC domain; HhH-GPD domain
YP_004784141.1	KEGG: afr:AFE_1553 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding
YP_004784142.1	KEGG: rlg:Rleg_5863 hypothetical protein
YP_004784143.1	TIGRFAM: Conserved hyprothetical protein CHP00028; KEGG: bvi:Bcep1808_6071 PilT domain-containing protein
YP_004784144.1	KEGG: afr:AFE_1990 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type
YP_004784145.1	PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; KEGG: afr:AFE_1989 2-isopropylmalate synthase
YP_004784146.1	KEGG: afe:Lferr_0177 hypothetical protein
YP_004784147.1	manually curated
YP_004784149.1	KEGG: afr:AFE_1988 cation-transporting P-type ATPase, putative; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal
YP_004784150.1	TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; HAMAP: UDP-2,3-diacylglucosamine hydrolase; KEGG: afr:AFE_1987 UDP-2,3-diacylglucosamine hydrolase; PFAM: Metallophosphoesterase
YP_004784151.1	PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: afr:AFE_1986 peptidyl-prolyl cis-trans isomerase B
YP_004784152.1	PFAM: Amino acid permease-associated region; KEGG: afr:AFE_1782 amino acid permease family protein
YP_004784153.1	KEGG: afr:AFE_1982 hypothetical protein
YP_004784154.1	TIGRFAM: Exonuclease VII, large subunit; HAMAP: Exodeoxyribonuclease 7 large subunit; KEGG: afr:AFE_1980 exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type
YP_004784155.1	KEGG: afr:AFE_1979 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_004784156.1	TIGRFAM: TonB, C-terminal; KEGG: afr:AFE_1978 TonB family protein
YP_004784157.1	PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_1977 fosmidomycin resistance protein, putative
YP_004784158.1	TIGRFAM: Exonuclease VII, small subunit; HAMAP: Exonuclease VII, small subunit; KEGG: afr:AFE_1976 exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit
YP_004784159.1	PFAM: Polyprenyl synthetase; KEGG: afr:AFE_1975 geranyltranstransferase
YP_004784160.1	TIGRFAM: Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; KEGG: afr:AFE_1974 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal
YP_004784161.1	PFAM: Protein of unknown function DUF198; KEGG: afr:AFE_1973 conserved hypothetical protein TIGR00294
YP_004784162.1	KEGG: afr:AFE_1972 chorismate synthase; TIGRFAM: Chorismate synthase; PFAM: Chorismate synthase
YP_004784163.1	PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_1971 transporter, putative
YP_004784164.1	TIGRFAM: Chaperonin ClpB; PFAM: ATPase associated with various cellular activities, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: afr:AFE_1970 ClpB protein; SMART: ATPase, AAA+ type, core
YP_004784165.1	PFAM: Glycosyl transferase, group 1; KEGG: afr:AFE_1427 glycosyl transferase, group 1 family protein
YP_004784166.1	TIGRFAM: Acetate--CoA ligase; HAMAP: Acetyl-coenzyme A synthetase; KEGG: afr:AFE_1969 acetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase
YP_004784167.1	PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: afr:AFE_1968 potassium-efflux system protein
YP_004784168.1	TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; HAMAP: ADP-L-glycero-D-manno-heptose-6-epimerase; KEGG: afr:AFE_1967 ADP-L-glycero-D-mannoheptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase
YP_004784169.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: afr:AFE_1966 NAD-dependent epimerase/dehydratase family protein
YP_004784170.1	KEGG: afr:AFE_1965 hypothetical protein
YP_004784171.1	PFAM: Fatty acid desaturase, type 1; KEGG: afr:AFE_1964 fatty acid desaturase
YP_004784172.1	PFAM: Protein of unknown function DUF125, transmembrane; KEGG: afr:AFE_0153 integral membrane protein
YP_004784173.1	KEGG: afr:AFE_2246 DsbG domain protein
YP_004784175.1	manually curated
YP_004784176.1	KEGG: afr:AFE_3146 rusticyanin; TIGRFAM: Rusticyanin; PFAM: Blue (type 1) copper domain
YP_004784177.1	manually curated; KEGG: afr:AFE_0803 hypothetical protein
YP_004784178.1	KEGG: afr:AFE_2654 DNA polymerase IV; HAMAP: DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like
YP_004784179.1	KEGG: afr:AFE_2771 SpoVT/AbrB like domain protein
YP_004784180.1	PFAM: PilT protein, N-terminal; KEGG: afr:AFE_2655 PIN domain protein
YP_004784184.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: noc:Noc_0566 glyoxalase/bleomycin resistance protein/dioxygenase
YP_004784185.1	KEGG: nhl:Nhal_1040 restriction modification system DNA specificity domain protein
YP_004784186.1	PFAM: TspO/MBR-related protein; KEGG: hna:Hneap_0210 TspO and MBR like protein
YP_004784187.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: afe:Lferr_0929 pyridoxamine 5'-phosphate oxidase-like protein
YP_004784188.1	KEGG: mpl:Mpal_2429 membrane protein-like protein
YP_004784189.1	KEGG: afr:AFE_0919 hypothetical protein
YP_004784190.1	KEGG: afr:AFE_0918 PAP2 family protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase
YP_004784192.1	KEGG: pol:Bpro_5386 hypothetical protein
YP_004784194.1	KEGG: rpc:RPC_0124 hypothetical protein
YP_004784195.1	KEGG: sjp:SJA_C1-26360 hypothetical protein
YP_004784196.1	PFAM: Ferric-uptake regulator; KEGG: afe:Lferr_1623 Fur family ferric uptake regulator
YP_004784197.1	PFAM: FAD dependent oxidoreductase; KEGG: afr:AFE_1956 oxidoreductase, FAD-binding
YP_004784198.1	PFAM: Protein of unknown function DUF490; KEGG: afr:AFE_1957 hypothetical protein
YP_004784199.1	PFAM: Bacterial surface antigen (D15); Surface antigen variable number; KEGG: afe:Lferr_1626 surface antigen (D15)
YP_004784200.1	KEGG: afr:AFE_1959 hypothetical protein
YP_004784201.1	PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_1961 AmpG permease protein, putative
YP_004784202.1	KEGG: afe:Lferr_1631 hypothetical protein
YP_004784203.1	KEGG: afr:AFE_0099 hypothetical protein
YP_004784204.1	KEGG: afr:AFE_0537 PAP2 family protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase
YP_004784205.1	KEGG: bpy:Bphyt_0287 major facilitator superfamily MFS_1; manually curated; PFAM: Major facilitator superfamily MFS-1
YP_004784206.1	PFAM: Heat shock protein Hsp33 protein; KEGG: afr:AFE_1408 33 kDa chaperonin
YP_004784207.1	PFAM: PP-loop; KEGG: afr:AFE_1407 PP-loop family protein
YP_004784208.1	KEGG: afr:AFE_1406 kinase, PfkB family; TIGRFAM: RfaE bifunctional protein, domain I; PFAM: Carbohydrate/purine kinase
YP_004784209.1	KEGG: afr:AFE_1405 UDP-glucose 6-dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal
YP_004784210.1	TIGRFAM: Holo-[acyl carrier protein] synthase; Phosphopantethiene-protein transferase; HAMAP: Holo-[acyl-carrier-protein] synthase; KEGG: afr:AFE_1404 holo-(acyl-carrier-protein) synthase; PFAM: 4'-phosphopantetheinyl transferase
YP_004784211.1	TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: afr:AFE_1403 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ
YP_004784212.1	TIGRFAM: Recombination protein O, RecO; HAMAP: DNA repair protein recO; KEGG: afr:AFE_1402 DNA repair protein RecO, putative; PFAM: Recombination protein O, RecO
YP_004784213.1	TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; HAMAP: GTP-binding protein Era; KEGG: afr:AFE_1401 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2
YP_004784214.1	SMART: Ribonuclease III; Double-stranded RNA binding; TIGRFAM: Ribonuclease III, bacterial; KEGG: afr:AFE_1400 ribonuclease III; HAMAP: Ribonuclease III, bacterial; PFAM: Ribonuclease III; Double-stranded RNA binding
YP_004784215.1	KEGG: afr:AFE_1399 hypothetical protein
YP_004784216.1	KEGG: afr:AFE_1398 signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region
YP_004784217.1	TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; HAMAP: GTP-binding protein lepA; KEGG: afr:AFE_1397 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal
YP_004784218.1	TIGRFAM: Peptidase S1C, Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; KEGG: afe:Lferr_1117 protease Do; SMART: PDZ/DHR/GLGF
YP_004784219.1	KEGG: afr:AFE_1395 hypothetical protein
YP_004784220.1	KEGG: afr:AFE_1394 RNA polymerase sigma-E factor; TIGRFAM: RNA polymerase sigma-70 RpoE type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2
YP_004784221.1	KEGG: afr:AFE_1392 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal
YP_004784222.1	KEGG: afr:AFE_1393 hypothetical protein
YP_004784223.1	KEGG: afr:AFE_1391 folate-binding protein YgfZ; TIGRFAM: Folate-binding, YgfZ; PFAM: Glycine cleavage T-protein, N-terminal
YP_004784224.1	KEGG: afr:AFE_1389 hypothetical protein
YP_004784225.1	PFAM: FIST C domain; FIST domain, N-terminal; KEGG: afr:AFE_1387 hypothetical protein
YP_004784226.1	KEGG: afr:AFE_0993 metallo-beta-lactamase family protein
YP_004784227.1	KEGG: afr:AFE_0992 hydrolase, TatD family; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related
YP_004784228.1	KEGG: afr:AFE_0991 tRNA (guanosine-2'-O-)-methyltransferase, putative; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding
YP_004784229.1	KEGG: afe:Lferr_1104 hypothetical protein
YP_004784230.1	KEGG: afe:Lferr_1103 hypothetical protein
YP_004784231.1	PFAM: Uncharacterised protein family UPF0118; KEGG: afr:AFE_0988 hypothetical protein
YP_004784232.1	KEGG: afr:AFE_0987 hypothetical protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal
YP_004784233.1	KEGG: afr:AFE_0986 hypothetical protein
YP_004784234.1	PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal; KEGG: afr:AFE_0985 antioxidant, AhpC/Tsa family
YP_004784235.1	PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: afr:AFE_0984 ferredoxin
YP_004784236.1	KEGG: afr:AFE_0983 ABC transporter, ATP-binding protein, MsbA family; PFAM: ABC transporter-like; ABC transporter, transmembrane region; SMART: ATPase, AAA+ type, core
YP_004784237.1	KEGG: gca:Galf_1825 hypothetical protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like
YP_004784238.1	KEGG: geb:GM18_1177 hypothetical protein
YP_004784239.1	KEGG: pag:PLES_21891 putative MoxR protein; PFAM: ATPase associated with various cellular activities, AAA-3; SMART: ATPase, AAA+ type, core
YP_004784240.1	PFAM: Glycine cleavage system P-protein, N-terminal; KEGG: afr:AFE_0982 glycine dehydrogenase subunit 2
YP_004784241.1	PFAM: Glycine cleavage system P-protein, N-terminal; KEGG: afr:AFE_0981 glycine dehydrogenase subunit 1
YP_004784242.1	TIGRFAM: Glycine cleavage H-protein, subgroup; HAMAP: Glycine cleavage H-protein; KEGG: afr:AFE_0980 glycine cleavage system H protein; PFAM: Glycine cleavage H-protein
YP_004784243.1	KEGG: afe:Lferr_1093 glycine cleavage system T protein; TIGRFAM: Glycine cleavage system T protein; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel
YP_004784244.1	KEGG: afr:AFE_0977 hypothetical protein; HAMAP: UPF0234 protein yajQ; PFAM: Protein of unknown function DUF520
YP_004784245.1	PFAM: Molybdopterin biosynthesis MoaE; KEGG: afr:AFE_0976 molybdopterin converting factor, subunit 2
YP_004784246.1	PFAM: ThiamineS; KEGG: afr:AFE_0975 molybdopterin converting factor, subunit 1
YP_004784247.1	KEGG: afr:AFE_0973 putative periplasmic protease; manually curated; PFAM: Peptidase S49, N-terminal proteobacteria; Peptidase S49
YP_004784248.1	KEGG: afr:AFE_0965 hypothetical protein
YP_004784249.1	PFAM: Protein of unknown function DUF423; KEGG: afr:AFE_0964 hypothetical protein
YP_004784250.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: afr:AFE_0963 male sterility protein
YP_004784251.1	KEGG: hap:HAPS_0017 Sel1 domain protein, repeat-containing protein; PFAM: Sel1-like; SMART: Sel1-like
YP_004784252.1	PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_0962 glucosyltransferase MdoH
YP_004784253.1	KEGG: afr:AFE_0961 hypothetical protein
YP_004784254.1	PFAM: Glucan biosynthesis, periplasmic, MdoG C-terminal; KEGG: afr:AFE_0960 glucan biosynthesis protein D
YP_004784256.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: afr:AFE_0958 pyridine nucleotide-disulfide oxidoreductase
YP_004784257.1	KEGG: afr:AFE_0949 hypothetical protein
YP_004784258.1	PFAM: Phospholipase/carboxylesterase; KEGG: afe:Lferr_1073 phospholipase/carboxylesterase
YP_004784259.1	KEGG: afr:AFE_0957 sigma-54 dependent transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core
YP_004784260.1	TIGRFAM: Thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC; KEGG: afr:AFE_0948 thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC
YP_004784261.1	PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: type III restriction protein res subunit
YP_004784262.1	PFAM: Protein of unknown function DUF86; KEGG: nhl:Nhal_0890 protein of unknown function DUF86
YP_004784263.1	PFAM: Nucleotidyltransferase; KEGG: psa:PST_1417 nucleotidyltransferase family protein
YP_004784264.1	KEGG: neu:NE2309 adenine specific DNA methylase Mod
YP_004784265.1	PFAM: KilA, N-terminal/APSES-type HTH DNA-binding domain; KEGG: nit:NAL212_1509 KilA,/APSES-type HTH DNA-binding domain
YP_004784266.1	KEGG: afr:AFE_0945 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004784267.1	KEGG: afr:AFE_0944 hypothetical protein
YP_004784268.1	PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; KEGG: afr:AFE_0943 phosphomannomutase, putative
YP_004784269.1	KEGG: afr:AFE_0942 DNA helicase, SNF2/RAD54 family; PFAM: SNF2-related; Zinc finger, SWIM-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal
YP_004784271.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: afe:Lferr_1059 lytic transglycosylase catalytic subunit
YP_004784272.1	KEGG: afr:AFE_0940 [NiFe] hydrogenase, beta subunit, putative
YP_004784273.1	PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: afr:AFE_0939 [NiFe] hydrogenase, gamma subunit, putative
YP_004784274.1	PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; KEGG: afr:AFE_0938 [NiFe] hydrogenase, delta subunit, putative
YP_004784275.1	PFAM: Nickel-dependent hydrogenase, large subunit; KEGG: afe:Lferr_1055 nickel-dependent hydrogenase large subunit
YP_004784276.1	KEGG: afr:AFE_0936 hydrogenase maturation protease; TIGRFAM: Peptidase A31, hydrogen uptake protein; PFAM: Peptidase A31, hydrogen uptake protein
YP_004784277.1	KEGG: rme:Rmet_1540 hydrogenase expression/formation protein HypE; TIGRFAM: Hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein
YP_004784278.1	KEGG: afr:AFE_3290 hydrogenase expression/formation protein HypD; TIGRFAM: Hydrogenase formation HypD protein; PFAM: Hydrogenase formation HypD protein
YP_004784279.1	KEGG: afr:AFE_3289 hydrogenase assembly chaperone HypC; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC; PFAM: Hydrogenase expression/formation protein, HupF/HypC
YP_004784280.1	TIGRFAM: Hydrogenase maturation factor, HypF-type; HAMAP: Acylphosphatase; KEGG: rme:Rmet_1537 (NiFe) hydrogenase maturation protein HypF; PFAM: Sua5/YciO/YrdC, N-terminal; Acylphosphatase-like; Zinc finger, HypF-type
YP_004784281.1	KEGG: afe:Lferr_2886 hydrogenase accessory protein HypB; TIGRFAM: Hydrogenase accessory protein HypB; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like
YP_004784282.1	TIGRFAM: Hydrogenase nickel incorporation protein HypA/HybF; HAMAP: Hydrogenase nickel incorporation protein HypA/HybF; KEGG: afr:AFE_3287 hydrogenase nickel insertion protein HypA; PFAM: Hydrogenase nickel incorporation protein HypA/HybF
YP_004784283.1	KEGG: afr:AFE_0935 hypothetical protein
YP_004784284.1	KEGG: afr:AFE_0934 alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1
YP_004784285.1	KEGG: afr:AFE_0933 regulatory protein RecX; HAMAP: Regulatory protein recX; PFAM: Regulatory protein RecX
YP_004784286.1	SMART: ATPase, AAA+ type, core; TIGRFAM: DNA recombination and repair protein RecA; KEGG: afr:AFE_0932 RecA protein; HAMAP: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA
YP_004784287.1	KEGG: afr:AFE_0930 CinA family protein; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal
YP_004784288.1	PFAM: Phosphatidylglycerophosphatase A; KEGG: afr:AFE_0929 phosphatidylglycerophosphatase A
YP_004784289.1	KEGG: afr:AFE_0928 thiamine-monophosphate kinase; TIGRFAM: Thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal
YP_004784290.1	KEGG: afr:AFE_0927 glutamyl-tRNA synthetase-related protein; TIGRFAM: glutamyl-queuosine tRNA(Asp) synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain
YP_004784291.1	TIGRFAM: Sugar fermentation stimulation protein; HAMAP: Sugar fermentation stimulation protein; KEGG: afr:AFE_0926 sugar fermentation stimulation protein; PFAM: Sugar fermentation stimulation protein
YP_004784292.1	KEGG: afr:AFE_0925 methionine aminopeptidase, type I; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; PFAM: Peptidase M24, structural domain
YP_004784293.1	SMART: Metal-dependent phosphohydrolase, HD region; TIGRFAM: Protein-PII uridylyltransferase; KEGG: afr:AFE_0924 protein-P-II uridylyltransferase; HAMAP: Protein-PII uridylyltransferase; PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Nucleotidyltransferase; Metal-dependent phosphohydrolase, HD region, subdomain; Amino acid-binding ACT
YP_004784294.1	KEGG: afr:AFE_0923 hypothetical protein; HAMAP: Uncharacterised protein family UPF0274; PFAM: Uncharacterised protein family UPF0274
YP_004784296.1	PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: afr:AFE_0131 hypothetical protein
YP_004784299.1	KEGG: afr:AFE_1943 DsbG domain protein
YP_004784300.1	KEGG: afr:AFE_3114 hypothetical protein
YP_004784301.1	KEGG: afe:Lferr_2711 cytochrome c-type biogenesis protein CcsB; TIGRFAM: Cytochrome c-type biogenesis protein CcsA; PFAM: Cytochrome c assembly protein
YP_004784302.1	PFAM: ResB-like; KEGG: afr:AFE_3112 cytochrome c-type biogenesis protein ResB
YP_004784304.1	KEGG: afr:AFE_3133 hypothetical protein
YP_004784305.1	KEGG: afr:AFE_3135 hypothetical protein
YP_004784306.1	PFAM: Conjugal transfer, TraD, alpha-type
YP_004784307.1	KEGG: afr:AFE_3136 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like
YP_004784308.1	KEGG: afe:Lferr_2736 two component fis family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region
YP_004784309.1	KEGG: afr:AFE_3138 oxidoreductase, 2OG-Fe(II) oxygenase family; PFAM: Oxoglutarate/iron-dependent oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit
YP_004784310.1	KEGG: afr:AFE_3139 hypothetical protein
YP_004784311.1	PFAM: Major facilitator superfamily MFS-1; KEGG: afe:Lferr_2740 major facilitator superfamily protein
YP_004784312.1	TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: afr:AFE_3143 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase
YP_004784313.1	KEGG: afe:Lferr_2742 hypothetical protein
YP_004784314.1	KEGG: afr:AFE_3146 rusticyanin; TIGRFAM: Rusticyanin; PFAM: Blue (type 1) copper domain
YP_004784315.1	KEGG: afe:Lferr_2744 hypothetical protein
YP_004784316.1	KEGG: afr:AFE_3147 cytochrome c oxidase, aa3-type, subunit IV
YP_004784317.1	KEGG: afr:AFE_3148 cytochrome c oxidase, aa3-type, subunit III
YP_004784318.1	PFAM: Cytochrome c oxidase, subunit I; KEGG: afr:AFE_3149 cytochrome c oxidase, aa3-type, subunit I
YP_004784319.1	PFAM: Cytochrome c oxidase subunit II C-terminal; KEGG: afr:AFE_3150 cytochrome c oxidase, aa3-type, subunit II
YP_004784320.1	KEGG: afr:AFE_3151 hypothetical protein
YP_004784321.1	PFAM: Cytochrome c, class I; KEGG: afr:AFE_3152 cytochrome c552
YP_004784322.1	KEGG: afr:AFE_3153 cytochrome c
YP_004784323.1	PFAM: Protein of unknown function DUF423; KEGG: afr:AFE_0152 hypothetical protein
YP_004784324.1	KEGG: afe:Lferr_2718 hypothetical protein
YP_004784325.1	KEGG: afe:Lferr_1358 hypothetical protein; HAMAP: UPF0753 protein; PFAM: Protein of unknown function DUF2309
YP_004784326.1	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; KEGG: afr:AFE_1662 NADH dehydrogenase, putative
YP_004784327.1	KEGG: afr:AFE_1669 hypothetical protein
YP_004784328.1	KEGG: afe:Lferr_1367 hypothetical protein
YP_004784329.1	KEGG: afr:AFE_1671 hypothetical protein
YP_004784330.1	TIGRFAM: Dihydroorotase homodimeric type; HAMAP: Dihydroorotase; KEGG: afr:AFE_1672 dihydroorotase; PFAM: Amidohydrolase 1
YP_004784331.1	TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: afe:Lferr_1370 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase
YP_004784332.1	KEGG: afr:AFE_1798 hypothetical protein
YP_004784333.1	KEGG: afr:AFE_1795 hypothetical protein
YP_004784335.1	KEGG: afr:AFE_2014 alkylhydroperoxidase AhpD family core domain protein; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase
YP_004784336.1	KEGG: afe:Lferr_1679 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR
YP_004784338.1	PFAM: Integrase, catalytic core, phage; KEGG: dds:Ddes_0438 hypothetical protein
YP_004784339.1	KEGG: afr:AFE_1719 ParB family protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease
YP_004784340.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: afe:Lferr_1411 cobyrinic acid ac-diamide synthase
YP_004784341.1	KEGG: mei:Msip34_2899 hypothetical protein
YP_004784343.1	PFAM: Bacterial conjugation TrbI-like protein; KEGG: afe:Lferr_0259 conjugation TrbI family protein
YP_004784345.1	PFAM: Conjugal transfer, TrbG/VirB9/CagX; KEGG: afe:Lferr_0257 conjugal transfer protein TrbG/VirB9/CagX
YP_004784346.1	KEGG: afr:AFE_1694 conjugal transfer protein
YP_004784347.1	KEGG: afe:Lferr_0251 P-type conjugative transfer protein TrbL; TIGRFAM: Conjugal transfer, TrbL; PFAM: Conjugal transfer, TrbL/VirB6
YP_004784348.1	TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: afr:AFE_1640 conjugal transfer protein TrbJ, putative
YP_004784349.1	TIGRFAM: Outer membrane autotransporter barrel; KEGG: hypothetical protein
YP_004784351.1	KEGG: hif:HIBPF05270 trimeric autotransporter adhesin
YP_004784353.1	KEGG: afe:Lferr_1339 CagE TrbE VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: ATPase, AAA+ type, core
YP_004784355.1	KEGG: gem:GM21_2349 type IV secretory pathway VirB3 family protein
YP_004784356.1	PFAM: Conjugal transfer,TrbC; KEGG: cak:Caul_5374 conjugal transfer protein TrbC
YP_004784358.1	KEGG: afe:Lferr_0244 P-type conjugative transfer ATPase TrbB; TIGRFAM: ATPase, P-type conjugative transfer, TrbB; PFAM: Type II secretion system protein E
YP_004784359.1	KEGG: afe:Lferr_0238 hypothetical protein
YP_004784361.1	TIGRFAM: DNA topoisomerase III, bacterial-type; PFAM: DNA topoisomerase, type IA, central; Toprim domain; KEGG: afe:Lferr_0283 DNA topoisomerase III; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup
YP_004784363.1	PFAM: RNA polymerase sigma-70 region 4
YP_004784364.1	KEGG: afr:AFE_0416 pilin, putative
YP_004784368.1	KEGG: rcu:RCOM_1784370 DNA polymerase I, putative; PFAM: DNA-directed DNA polymerase, family A, palm domain; SMART: DNA-directed DNA polymerase, family A, palm domain
YP_004784369.1	KEGG: bug:BC1001_1781 toprim sub domain-containing protein
YP_004784372.1	PFAM: PemK-like protein; KEGG: bug:BC1001_3350 PemK family protein
YP_004784373.1	PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: bug:BC1001_3349 SpoVT/AbrB domain-containing protein
YP_004784374.1	KEGG: pla:Plav_2323 hypothetical protein
YP_004784379.1	PFAM: Phosphoadenosine phosphosulphate reductase; KEGG: vei:Veis_3757 phosphoadenosine phosphosulfate reductase
YP_004784380.1	KEGG: afe:Lferr_0242 type IV secretory pathway VirD2 pilin (relaxase)-like protein
YP_004784383.1	PFAM: Rickettsia 17kDa surface antigen; KEGG: afr:AFE_1234 lipoprotein, putative
YP_004784385.1	KEGG: afe:Lferr_1333 hypothetical protein
YP_004784387.1	PFAM: Domain of unknown function DUF1738; KEGG: afe:Lferr_0235 hypothetical protein
YP_004784388.1	KEGG: sma:SAV_4852 putative oxidoreductase/heat repeat-containing protein
YP_004784390.1	PFAM: Peptidase S26, conserved region; KEGG: afr:AFE_1726 conjugal transfer protein TraF, putative
YP_004784391.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: afr:AFE_1698 conjugal transfer -like protein
YP_004784393.1	KEGG: tkm:TK90_2739 hypothetical protein
YP_004784394.1	KEGG: tin:Tint_2014 TraB family protein
YP_004784395.1	KEGG: bch:Bcen2424_6894 hypothetical protein
YP_004784396.1	KEGG: xau:Xaut_0681 hypothetical protein
YP_004784397.1	PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: dly:Dehly_1610 type III site-specific deoxyribonuclease
YP_004784398.1	PFAM: DNA methylase N-4/N-6; KEGG: dly:Dehly_1612 adenine-specific DNA-methyltransferase
YP_004784399.1	KEGG: slt:Slit_1103 hypothetical protein
YP_004784400.1	KEGG: shn:Shewana3_2957 HNH endonuclease
YP_004784401.1	KEGG: cpc:Cpar_0774 hypothetical protein
YP_004784402.1	KEGG: msl:Msil_1945 helicase domain protein; PFAM: SNF2-related; TT viral ORF2 protein; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal
YP_004784403.1	PFAM: GTP-binding protein, HSR1-related; KEGG: gym:GYMC10_6289 small GTP-binding protein
YP_004784405.1	KEGG: afr:AFE_1070 DNA-binding protein, HU family; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein
YP_004784408.1	KEGG: afr:AFE_1585 hypothetical protein
YP_004784409.1	PFAM: Histone-like bacterial DNA-binding protein; KEGG: afr:AFE_1584 DNA-binding protein HU family protein
YP_004784410.1	KEGG: afr:AFE_1070 DNA-binding protein, HU family; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein
YP_004784411.1	PFAM: CopG-like DNA-binding; KEGG: xfa:XF2075 hypothetical protein
YP_004784412.1	KEGG: apt:APA01_21560 outer membrane protein
YP_004784416.1	PFAM: Type II secretion system F domain; KEGG: afr:AFE_0972 type IV pilus biogenesis protein PilC
YP_004784418.1	KEGG: afr:AFE_1215 ISAfe8, transposase; TIGRFAM: Transposase, IS605 OrfB, C-terminal; PFAM: Transposase, probable, IS891/IS1136/IS1341; Transposase, IS605 OrfB, C-terminal
YP_004784419.1	KEGG: afr:AFE_0418 hypothetical protein
YP_004784423.1	KEGG: afr:AFE_0416 pilin, putative
YP_004784424.1	PFAM: Sel1-like; KEGG: afr:AFE_0409 hypothetical protein
YP_004784425.1	PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: cph:Cpha266_2270 transposase, IS204/IS1001/IS1096/IS1165 family protein
YP_004784427.1	PFAM: Transposase, IS66; KEGG: eba:ebA859 transposase
YP_004784429.1	PFAM: Transposase (putative), IS66 Orf2 like; KEGG: eba:ebB23 transpoase helper protein
YP_004784430.1	KEGG: eba:ebD29 hypothetical protein
YP_004784431.1	KEGG: gpb:HDN1F_00180 hypothetical protein
YP_004784432.1	SMART: Phospholipid/glycerol acyltransferase; KEGG: afe:Lferr_1301 phospholipid/glycerol acyltransferase
YP_004784436.1	PFAM: TRAG protein; KEGG: hna:Hneap_1649 TraG family protein
YP_004784437.1	KEGG: aav:Aave_0391 hypothetical protein
YP_004784439.1	KEGG: dds:Ddes_1577 ParB domain protein nuclease; PFAM: ParB-like nuclease; SMART: ParB-like nuclease
YP_004784441.1	PFAM: Phosphoadenosine phosphosulphate reductase; KEGG: dds:Ddes_1579 phosphoadenosine phosphosulfate reductase
YP_004784442.1	KEGG: aoe:Clos_1290 helicase domain-containing protein; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal
YP_004784444.1	PFAM: NLP/P60; KEGG: afr:AFE_1828 lipoprotein, NLP/P60 family
YP_004784445.1	KEGG: afr:AFE_1827 membrane-bound lytic murein transglycosylase B, putative
YP_004784446.1	KEGG: afr:AFE_1826 amidohydrolase family protein; HAMAP: 5-methylthioadenosine/S-adenosylhomocysteine deaminase; PFAM: Amidohydrolase 1
YP_004784447.1	TIGRFAM: Ubiquinone biosynthesis O-methyltransferase; HAMAP: 3-demethylubiquinone-9 3-methyltransferase; KEGG: afr:AFE_1825 3-demethylubiquinone-9 3-methyltransferase; PFAM: Methyltransferase type 11
YP_004784448.1	KEGG: afr:AFE_1823 phosphoglycolate phosphatase; TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase
YP_004784449.1	PFAM: Protein of unknown function DUF6, transmembrane; KEGG: afr:AFE_1824 hypothetical protein
YP_004784450.1	KEGG: afr:AFE_1821 aminotransferase, classes I and II; TIGRFAM: Succinyldiaminopimelate transaminase, beta/gammaproteobacteria; PFAM: Aminotransferase, class I/II
YP_004784451.1	TIGRFAM: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; HAMAP: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; KEGG: afr:AFE_1820 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; PFAM: Bacterial transferase hexapeptide repeat
YP_004784452.1	TIGRFAM: Succinyl-diaminopimelate desuccinylase, proteobacteria; HAMAP: Succinyl-diaminopimelate desuccinylase, proteobacteria; KEGG: afr:AFE_1819 succinyl-diaminopimelate desuccinylase; PFAM: Peptidase M20; Peptidase M20, dimerisation
YP_004784453.1	KEGG: afr:AFE_1818 rare lipoprotein A, putative; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A; Sporulation/cell division region, bacteria
YP_004784454.1	PFAM: Sulfotransferase; KEGG: afr:AFE_1817 sulfotransferase domain protein
YP_004784455.1	KEGG: afr:AFE_1816 phosphoenolpyruvate synthase; TIGRFAM: Phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; PEP-utilising enzyme
YP_004784456.1	TIGRFAM: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; HAMAP: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: afr:AFE_1815 phosphoglyceromutase; PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme
YP_004784457.1	PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; KEGG: afr:AFE_1811 2-oxo acid dehydrogenase, acyltransferase, putative
YP_004784458.1	TIGRFAM: Acetate kinase; HAMAP: Acetate kinase; KEGG: afr:AFE_1810 acetate kinase; PFAM: Acetate/butyrate kinase
YP_004784459.1	PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_1809 major facilitator family protein
YP_004784460.1	PFAM: Phosphate acetyl/butaryl transferase; KEGG: afr:AFE_1808 phosphate acetyl/butyryl transferase
YP_004784461.1	KEGG: afr:AFE_1807 carbohydrate kinase, PfkB family; TIGRFAM: 1-phosphofructokinase; PFAM: Carbohydrate/purine kinase
YP_004784462.1	KEGG: afe:Lferr_1481 hypothetical protein
YP_004784463.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: afr:AFE_1803 pyridine nucleotide-disulfide oxidoreductase
YP_004784464.1	PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: afr:AFE_1802 aldolase
YP_004784465.1	PFAM: Pyruvate kinase, barrel; Enolase, C-terminal; KEGG: afe:Lferr_1478 pyruvate kinase
YP_004784466.1	KEGG: afr:AFE_1799 alpha-glucan phosphorylase family protein; TIGRFAM: Alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35
YP_004784467.1	KEGG: afr:AFE_1798 hypothetical protein
YP_004784468.1	PFAM: Phosphoribosyltransferase; KEGG: afr:AFE_3103 phosphoribosyl transferase domain protein
YP_004784470.1	KEGG: afr:AFE_2085 hypothetical protein
YP_004784471.1	PFAM: Transglycosylase-associated protein; KEGG: afe:Lferr_1472 transglycosylase-associated protein
YP_004784472.1	KEGG: afr:AFE_1794 base excision repair protein, HhH-GPD family; PFAM: HhH-GPD domain; SMART: HhH-GPD domain
YP_004784473.1	TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: afr:AFE_1793 ribosomal large subunit pseudouridine synthase B; SMART: RNA-binding S4
YP_004784474.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afr:AFE_1792 sulfide-quinone reductase, putative
YP_004784475.1	PFAM: Chromosome segregation/condensation protein ScpB, prokaryote; KEGG: afr:AFE_1791 segregation and condensation protein B
YP_004784476.1	KEGG: afr:AFE_1790 segregation and condensation protein A; manually curated; PFAM: Prokaryotic chromosome segregation/condensation protein ScpA
YP_004784477.1	KEGG: afr:AFE_1789 tryptophanyl-tRNA synthetase; TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; PFAM: Aminoacyl-tRNA synthetase, class Ib
YP_004784478.1	PFAM: Peptidase M50; KEGG: afr:AFE_1788 membrane-associated zinc metalloprotease, putative
YP_004784479.1	KEGG: afr:AFE_1787 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal
YP_004784480.1	KEGG: afr:AFE_1786 hypothetical protein
YP_004784481.1	KEGG: bgf:BC1003_1824 putative signal peptide protein
YP_004784482.1	KEGG: afr:AFE_1785 hypothetical protein
YP_004784483.1	PFAM: Mechanosensitive ion channel MscS; KEGG: afr:AFE_1784 mechanosensitive ion channel family protein
YP_004784484.1	SMART: Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: Glutamate 5-kinase, ProB-related; KEGG: afe:Lferr_1460 glutamate 5-kinase; HAMAP: Glutamate 5-kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase
YP_004784485.1	TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; HAMAP: GMP synthase [glutamine-hydrolyzing]; KEGG: afr:AFE_1778 GMP synthase; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; tRNA methyl transferase-like; NAD+ synthase
YP_004784486.1	TIGRFAM: IMP dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; KEGG: afr:AFE_1777 inosine-5'-monophosphate dehydrogenase; SMART: Cystathionine beta-synthase, core
YP_004784487.1	PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_1776 glycosyl transferase
YP_004784488.1	KEGG: afe:Lferr_1451 poly(A) polymerase; TIGRFAM: Poly(A) polymerase, PcnB; PFAM: Polynucleotide adenylyltransferase region
YP_004784489.1	KEGG: afr:AFE_1774 polyA polymerase family protein; manually curated; PFAM: Polynucleotide adenylyltransferase region
YP_004784490.1	KEGG: afe:Lferr_1449 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK
YP_004784491.1	PFAM: Deoxynucleoside kinase; KEGG: afr:AFE_1772 deoxyguanosine kinase/deoxyadenosine kinase, putative
YP_004784492.1	TIGRFAM: Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; KEGG: afr:AFE_1771 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase
YP_004784493.1	TIGRFAM: Pantoate-beta-alanine ligase; HAMAP: Pantoate-beta-alanine ligase; KEGG: afr:AFE_1770 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase
YP_004784494.1	PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; Cysteine-rich region, CCG; KEGG: afr:AFE_1769 oxidoreductase, FAD-binding, putative
YP_004784495.1	PFAM: Protein of unknown function DUF1275; KEGG: nha:Nham_4228 hypothetical protein
YP_004784496.1	KEGG: afe:Lferr_1444 Smr protein/MutS2; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal
YP_004784497.1	PFAM: Class II aldolase/adducin, N-terminal; KEGG: afr:AFE_1766 hypothetical protein
YP_004784498.1	KEGG: afr:AFE_1767 exodeoxyribonuclease X, putative; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease
YP_004784499.1	PFAM: Uncharacterised protein family UPF0005; KEGG: afr:AFE_1764 hypothetical protein
YP_004784500.1	SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; TIGRFAM: DNA mismatch repair protein MutS, type 1; KEGG: afr:AFE_1760 DNA mismatch repair protein MutS; HAMAP: DNA mismatch repair protein MutS, type 1; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp
YP_004784502.1	PFAM: SNARE associated Golgi protein; KEGG: afr:AFE_1136 membrane protein, DedA family
YP_004784504.1	PFAM: Protein of unknown function DUF2506; KEGG: pla:Plav_1236 hypothetical protein
YP_004784505.1	KEGG: pol:Bpro_0451 CopG family protein
YP_004784506.1	KEGG: afr:AFE_0867 hypothetical protein
YP_004784507.1	KEGG: afr:AFE_0865 hypothetical protein
YP_004784508.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_0866 transcriptional regulator, LysR family
YP_004784509.1	KEGG: afr:AFE_0864 drug resistance transporter, EmrB/QacA family; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004784510.1	KEGG: afr:AFE_0863 RND efflux system, drug efflux transporter, outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein
YP_004784511.1	PFAM: Secretion protein HlyD; KEGG: afe:Lferr_0986 secretion protein HlyD family protein
YP_004784512.1	PFAM: Globin, subset; KEGG: afr:AFE_0861 globin domain protein
YP_004784513.1	PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; Ferredoxin; KEGG: afr:AFE_0860 iron-sulfur cluster-binding protein/oxidoreductase, FAD/NAD-binding
YP_004784514.1	KEGG: afr:AFE_2867 thioredoxin family protein
YP_004784515.1	PFAM: Haemerythrin/HHE cation-binding motif; KEGG: afr:AFE_2868 hypothetical protein
YP_004784516.1	KEGG: afr:AFE_2869 glycine cleavage system H protein, putative; HAMAP: Glycine cleavage H-protein; PFAM: Glycine cleavage H-protein
YP_004784517.1	PFAM: Protein of unknown function DUF488; KEGG: afe:Lferr_0982 hypothetical protein
YP_004784518.1	KEGG: afe:Lferr_0981 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp
YP_004784519.1	KEGG: mca:MCA0589 nitrate transporter, putative
YP_004784520.1	PFAM: Major facilitator superfamily MFS-1; KEGG: bph:Bphy_2337 major facilitator transporter
YP_004784521.1	KEGG: rmr:Rmar_1225 hypothetical protein
YP_004784522.1	KEGG: bpr:GBP346_A0485 nitrite reductase [NAD(P)H], large subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; PFAM: Nitrite/sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like
YP_004784523.1	KEGG: hdn:Hden_2952 nitrite reductase (NAD(P)H), small subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD; PFAM: Rieske [2Fe-2S] iron-sulphur domain
YP_004784524.1	PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; BFD-like [2Fe-2S]-binding region; KEGG: mei:Msip34_0344 molybdopterin oxidoreductase
YP_004784525.1	PFAM: Glycosyl transferase, family 3, N-terminal; KEGG: dar:Daro_0815 glycosyl transferase family protein
YP_004784526.1	KEGG: afr:AFE_3126 uroporphyrin-III C-methyltransferase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; PFAM: Tetrapyrrole methylase
YP_004784527.1	PFAM: Cobalamin (vitamin B12) biosynthesis CbiX; KEGG: afr:AFE_3127 hypothetical protein
YP_004784528.1	KEGG: dar:Daro_0829 response regulator receiver:ANTAR; PFAM: ANTAR; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region
YP_004784529.1	PFAM: Protein of unknown function DUF1778; KEGG: afr:AFE_1418 hypothetical protein
YP_004784530.1	PFAM: GCN5-related N-acetyltransferase; KEGG: afr:AFE_1417 acetyltransferase, GNAT family
YP_004784531.1	KEGG: afr:AFE_1851 glycosyl transferase, group 2 family protein
YP_004784532.1	KEGG: afe:Lferr_1434 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase
YP_004784533.1	TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: tsa:AciPR4_2084 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted
YP_004784534.1	KEGG: har:HEAR0296 protein kinase
YP_004784535.1	manually curated
YP_004784536.1	KEGG: afr:AFE_2653 hypothetical protein
YP_004784539.1	manually curated; KEGG: sfr:Sfri_2035 hypothetical protein
YP_004784540.1	PFAM: Major intrinsic protein; KEGG: cte:CT1472 major intrinsic protein
YP_004784541.1	KEGG: xac:XACa0008 hypothetical protein
YP_004784543.1	manually curated; KEGG: azl:AZL_021040 hypothetical protein
YP_004784544.1	PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: chy:CHY_0237 putative undecaprenyl diphosphate synthase
YP_004784546.1	KEGG: afr:AFE_1624 hypothetical protein
YP_004784547.1	PFAM: CsbD-like; KEGG: nmu:Nmul_A1602 CsbD-like
YP_004784548.1	PFAM: PRC-barrel; KEGG: alv:Alvin_0926 PRC-barrel domain-containing protein
YP_004784550.1	KEGG: afe:Lferr_2071 hypothetical protein
YP_004784551.1	KEGG: pct:PC1_0454 transport-associated protein; PFAM: Transport-associated; SMART: Transport-associated and nodulation region, bacteria
YP_004784552.1	PFAM: PRC-barrel; KEGG: afr:AFE_0361 hypothetical protein
YP_004784553.1	KEGG: afr:AFE_0362 hypothetical protein
YP_004784554.1	KEGG: afr:AFE_2653 hypothetical protein
YP_004784555.1	PFAM: SNARE associated Golgi protein; KEGG: afr:AFE_1136 membrane protein, DedA family
YP_004784556.1	KEGG: afr:AFE_0831 hypothetical protein
YP_004784558.1	KEGG: lch:Lcho_2219 hypothetical protein
YP_004784559.1	KEGG: mea:Mex_1p1482 hypothetical protein
YP_004784560.1	KEGG: afo:Afer_0254 chloride channel core; manually curated; PFAM: Chloride channel, voltage gated
YP_004784561.1	TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; KEGG: csa:Csal_2342 XRE family plasmid maintenance system antidote protein; SMART: Helix-turn-helix type 3
YP_004784562.1	PFAM: Pirin, N-terminal; KEGG: mfa:Mfla_1833 pirin-like protein
YP_004784563.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: afr:AFE_1007 transglycosylase, putative
YP_004784565.1	TIGRFAM: DNA topoisomerase IV, subunit A, Gram-negative; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; KEGG: afr:AFE_2028 DNA topoisomerase IV subunit A; SMART: DNA topoisomerase, type IIA, subunit A or C-terminal
YP_004784566.1	KEGG: afr:AFE_2029 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; DNA topoisomerase, type IIA, subunit B, C-terminal; SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like
YP_004784567.1	PFAM: Signal transduction response regulator, C-terminal; KEGG: afe:Lferr_2550 putative winged helix family two component transcriptional regulator
YP_004784568.1	PFAM: Acriflavin resistance protein; KEGG: afe:Lferr_1699 acriflavin resistance protein
YP_004784569.1	KEGG: afr:AFE_2036 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004784570.1	PFAM: Outer membrane efflux protein; KEGG: afr:AFE_2037 outer membrane efflux protein
YP_004784571.1	KEGG: afr:AFE_2031 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region
YP_004784572.1	KEGG: afr:AFE_2032 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region
YP_004784573.1	PFAM: Peptidase M4, propeptide, PepSY; KEGG: afr:AFE_2033 hypothetical protein
YP_004784574.1	PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: afr:AFE_2040 TonB-dependent receptor
YP_004784575.1	KEGG: afr:AFE_3099 hypothetical protein
YP_004784576.1	KEGG: afr:AFE_2041 hypothetical protein
YP_004784577.1	TIGRFAM: Signal transduction response regulator, heavy metal response; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; KEGG: tin:Tint_1277 two component transcriptional regulator, winged helix family; SMART: Signal transduction response regulator, receiver region
YP_004784578.1	TIGRFAM: Signal transduction histidine kinase, heavy metal sensor; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; KEGG: tin:Tint_1278 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain
YP_004784579.1	PFAM: Outer membrane efflux protein; KEGG: afr:AFE_2045 outer membrane efflux protein
YP_004784580.1	TIGRFAM: Secretion protein HlyD; KEGG: afr:AFE_2044 efflux transporter, RND family, MFP subunit
YP_004784581.1	PFAM: Acriflavin resistance protein; KEGG: afr:AFE_2043 transporter, AcrB/AcrD/AcrF family
YP_004784582.1	PFAM: Protein of unknown function DUF6, transmembrane; KEGG: afr:AFE_2052 hypothetical protein
YP_004784583.1	KEGG: afe:Lferr_2097 hypothetical protein
YP_004784586.1	PFAM: Outer membrane efflux protein; KEGG: afr:AFE_1949 outer membrane heavy metal efflux protein, putative
YP_004784587.1	KEGG: afe:Lferr_0171 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004784588.1	KEGG: afe:Lferr_0172 CzcA family heavy metal efflux pump; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein
YP_004784589.1	PFAM: Pyruvate kinase, barrel; KEGG: afe:Lferr_0897 pyruvate kinase
YP_004784590.1	KEGG: afr:AFE_0750 CDP-diacylglycerol--serine O-phosphatidyltransferse; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase
YP_004784591.1	TIGRFAM: Phosphatidylserine decarboxylase-related protein; HAMAP: Phosphatidylserine decarboxylase proenzyme; KEGG: afr:AFE_0748 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related
YP_004784592.1	TIGRFAM: Acetohydroxy acid isomeroreductase; HAMAP: Ketol-acid reductoisomerase; KEGG: afr:AFE_0747 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal
YP_004784593.1	KEGG: afr:AFE_0746 acetolactate synthase, small subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT
YP_004784594.1	KEGG: afr:AFE_0745 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding
YP_004784595.1	KEGG: afr:AFE_0744 MutS domain V protein; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core
YP_004784596.1	KEGG: afr:AFE_0743 hypothetical protein
YP_004784597.1	KEGG: afr:AFE_0742 conserved hypothetical protein TIGR00149; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047
YP_004784598.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: afr:AFE_0741 cytidine and deoxycytidylate deaminase family protein
YP_004784599.1	TIGRFAM: Type IV pilus assembly protein PilM; KEGG: afr:AFE_0739 type IV pilus assembly protein PilM
YP_004784600.1	PFAM: Fimbrial assembly; KEGG: afr:AFE_0738 type IV pilus biogenesis protein PilN
YP_004784601.1	PFAM: Pilus assembly protein, PilO; KEGG: afr:AFE_0737 fimbrial assembly protein PilO, putative
YP_004784602.1	PFAM: Pilus assembly protein PilP; KEGG: afr:AFE_0736 type 4 fimbrial biogenesis protein PilP, putative
YP_004784603.1	KEGG: afr:AFE_0735 fimbrial assembly protein PilQ, putative; TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal
YP_004784604.1	KEGG: afr:AFE_0734 shikimate kinase; HAMAP: Shikimate kinase; PFAM: Shikimate kinase
YP_004784605.1	TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase; KEGG: afr:AFE_0733 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB
YP_004784606.1	KEGG: afe:Lferr_0880 thymidylate synthase, flavin-dependent; TIGRFAM: Thymidylate synthase ThyX; PFAM: Thymidylate synthase ThyX
YP_004784607.1	SMART: Metal-dependent phosphohydrolase, HD region; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; KEGG: afr:AFE_0731 deoxyguanosinetriphosphate triphosphohydrolase, putative; HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase-like protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain
YP_004784608.1	PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal; KEGG: afr:AFE_0730 glutamate synthase, large subunit
YP_004784609.1	KEGG: afr:AFE_0729 glutamate synthase, small subunit; TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 2; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004784610.1	TIGRFAM: Uroporphyrinogen decarboxylase HemE; HAMAP: Uroporphyrinogen decarboxylase HemE; KEGG: afr:AFE_0728 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D)
YP_004784611.1	TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; KEGG: afe:Lferr_0875 1-acyl-sn-glycerol-3-phosphate acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_004784612.1	KEGG: afr:AFE_0726 hypothetical protein
YP_004784613.1	KEGG: afr:AFE_0725 hypothetical protein
YP_004784614.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: afr:AFE_0724 hydrolase, alpha/beta hydrolase fold family
YP_004784615.1	PFAM: HTH transcriptional regulator, LysR; KEGG: afr:AFE_0723 helix-turn-helix domain protein
YP_004784616.1	KEGG: afr:AFE_0722 threonine ammonia-lyase, biosynthetic; TIGRFAM: Threonine dehydratase I; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal
YP_004784617.1	PFAM: FAD dependent oxidoreductase; KEGG: afr:AFE_0720 FAD-dependent oxidoreductase
YP_004784618.1	KEGG: rpe:RPE_1031 hypothetical protein
YP_004784619.1	KEGG: vha:VIBHAR_05006 hypothetical protein
YP_004784620.1	KEGG: par:Psyc_0020 hypothetical protein
YP_004784621.1	PFAM: DNA methylase N-4/N-6; KEGG: vei:Veis_4172 DNA methylase N-4/N-6 domain-containing protein
YP_004784622.1	KEGG: cph:Cpha266_1711 DNA-damage-inducible protein D
YP_004784623.1	manually curated; PFAM: Addiction module component, CHP02574
YP_004784624.1	PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: vei:Veis_4168 type III restriction enzyme, res subunit
YP_004784625.1	KEGG: afr:AFE_2056 protein-export membrane protein SecF; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein
YP_004784626.1	KEGG: afr:AFE_2057 protein-export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein
YP_004784627.1	KEGG: afr:AFE_2058 preprotein translocase, YajC subunit; TIGRFAM: YajC; PFAM: YajC
YP_004784628.1	TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; KEGG: afr:AFE_2059 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase
YP_004784629.1	TIGRFAM: Queuosine biosynthesis protein; HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; KEGG: afr:AFE_2060 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein
YP_004784630.1	PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; KEGG: afr:AFE_2061 CBS domain protein
YP_004784631.1	PFAM: Cystathionine beta-synthase, core; KEGG: afr:AFE_2062 CBS domain protein
YP_004784632.1	KEGG: afr:AFE_2063 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme
YP_004784633.1	KEGG: afe:Lferr_1722 amidophosphoribosyltransferase; TIGRFAM: Amidophosphoribosyl transferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase
YP_004784634.1	PFAM: Colicin V production protein; KEGG: afr:AFE_2065 CvpA family protein
YP_004784635.1	KEGG: afr:AFE_2066 folylpolyglutamate synthase/dihydrofolate synthase; TIGRFAM: Folylpolyglutamate synthetase; PFAM: Mur ligase, central; Mur ligase, C-terminal
YP_004784636.1	TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; HAMAP: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; KEGG: afr:AFE_2067 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: Carboxyl transferase
YP_004784637.1	TIGRFAM: Tryptophan synthase, alpha chain; HAMAP: Tryptophan synthase, alpha chain; KEGG: afr:AFE_2068 tryptophan synthase subunit alpha; PFAM: Tryptophan synthase, alpha chain
YP_004784638.1	TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain; KEGG: afr:AFE_2069 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit
YP_004784639.1	PRAI; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: afr:AFE_2070 N-(5'phosphoribosyl)anthranilate isomerase
YP_004784640.1	TIGRFAM: Pseudouridine synthase I, TruA; HAMAP: Pseudouridine synthase I, TruA; KEGG: afr:AFE_2071 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain
YP_004784641.1	TIGRFAM: Motility protein FimV, C-terminal; Motility protein FimV, N-terminal; KEGG: afe:Lferr_1730 Tfp pilus assembly protein FimV-like protein
YP_004784642.1	KEGG: afr:AFE_2074 aspartate-semialdehyde dehydrogenase; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; PFAM: Semialdehyde dehydrogenase, dimerisation region; Semialdehyde dehydrogenase, NAD-binding
YP_004784643.1	TIGRFAM: Isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; KEGG: afr:AFE_2075 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase
YP_004784645.1	KEGG: afe:Lferr_1733 molybdopterin-guanine dinucleotide biosynthesis protein A; TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein A; HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A
YP_004784646.1	KEGG: afr:AFE_2077 molybdopterin-guanine dinucleotide biosynthesis protein B; TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis MobB region; PFAM: Molybdopterin-guanine dinucleotide biosynthesis MobB region
YP_004784647.1	KEGG: afr:AFE_2078 molybdopterin biosynthesis MoeA protein; TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal region, domain I/II; Molybdopterin binding; MoeA, C-terminal, domain IV
YP_004784648.1	KEGG: afr:AFE_2079 endonuclease
YP_004784649.1	KEGG: afr:AFE_2644 metallo-beta-lactamase family protein
YP_004784650.1	KEGG: afr:AFE_0573 conserved hypothetical protein TIGR00296; TIGRFAM: AMMECR1; PFAM: AMMECR1
YP_004784651.1	PFAM: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related; KEGG: afe:Lferr_0726 hypothetical protein
YP_004784652.1	KEGG: afr:AFE_2858 arsenical pump membrane protein; TIGRFAM: Arsenical pump membrane protein; PFAM: Arsenical pump membrane protein
YP_004784653.1	KEGG: afr:AFE_2859 transcriptional regulator, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004784654.1	PFAM: HAMP linker domain; KEGG: dvm:DvMF_1372 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor
YP_004784655.1	KEGG: cho:Chro.60463 hypothetical protein
YP_004784656.1	PFAM: Uncharacterised protein family UPF0118; KEGG: afr:AFE_0571 hypothetical protein
YP_004784657.1	KEGG: afr:AFE_0570 protoporphyrinogen oxidase; TIGRFAM: Protoporphyrinogen oxidase; PFAM: Amine oxidase
YP_004784658.1	PFAM: YkuD domain; KEGG: afr:AFE_0569 ErfK/YbiS/YcfS/YnhG family
YP_004784659.1	TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; KEGG: afr:AFE_0568 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal
YP_004784660.1	KEGG: afr:AFE_0567 hypothetical protein
YP_004784661.1	KEGG: afr:AFE_0566 endoribonuclease L-PSP, putative; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP
YP_004784662.1	TIGRFAM: RelA/SpoT protein; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD region, subdomain; TGS; Amino acid-binding ACT; KEGG: afe:Lferr_0719 (p)ppGpp synthetase I SpoT/RelA; SMART: Metal-dependent phosphohydrolase, HD region
YP_004784663.1	TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: afr:AFE_0564 DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6
YP_004784664.1	SMART: Guanylate kinase/L-type calcium channel region; TIGRFAM: Guanylate kinase, sub-group; KEGG: afr:AFE_0563 guanylate kinase; HAMAP: Guanylate kinase, sub-group; PFAM: Guanylate kinase
YP_004784665.1	KEGG: afr:AFE_0562 YicC family protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: Domain of unknown function DUF1732; YicC-like, N-terminal
YP_004784666.1	KEGG: afr:AFE_0560 hypothetical protein
YP_004784667.1	PFAM: Redoxin; KEGG: afr:AFE_0047 hypothetical protein
YP_004784668.1	KEGG: afr:AFE_3054 von Willebrand factor type A domain protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A
YP_004784669.1	KEGG: afr:AFE_3053 CbbQ protein
YP_004784670.1	PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: afr:AFE_3052 ribulose bisphosphate carboxylase, small subunit
YP_004784671.1	KEGG: afr:AFE_3051 ribulose bisophosphate carboxylase; HAMAP: Ribulose bisphosphate carboxylase large chain; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal
YP_004784673.1	PFAM: Secretion protein HlyD; KEGG: afr:AFE_2861 secretion protein, HlyD family
YP_004784674.1	KEGG: afr:AFE_2862 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004784675.1	PFAM: ABC-2 type transporter; KEGG: afr:AFE_2863 ABC transporter, permease protein, putative
YP_004784676.1	PFAM: ABC-2 type transporter; KEGG: afr:AFE_2864 ABC transporter, permease protein, putative
YP_004784677.1	KEGG: afr:AFE_1070 DNA-binding protein, HU family; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein
YP_004784678.1	KEGG: bbr:BB4378 histone protein
YP_004784680.1	KEGG: ana:all2689 type I restriction enzyme, modification chain
YP_004784681.1	PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: afe:Lferr_0929 pyridoxamine 5'-phosphate oxidase-like protein
YP_004784683.1	PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: bvi:Bcep1808_0145 SpoVT/AbrB domain-containing protein
YP_004784684.1	PFAM: PilT protein, N-terminal; KEGG: avn:Avin_36180 PilT domain-containing protein
YP_004784685.1	KEGG: afr:AFE_1597 transposase, degenerate
YP_004784688.1	PFAM: Restriction endonuclease, type IV-like, Mrr; KEGG: pgi:PG0968 Mrr restriction system protein
YP_004784689.1	KEGG: mmh:Mmah_1308 hypothetical protein
YP_004784690.1	KEGG: bid:Bind_2672 N-6 DNA methylase; TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit; PFAM: DNA methylase, adenine-specific
YP_004784691.1	PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: bid:Bind_2673 restriction modification system DNA specificity subunit
YP_004784692.1	PFAM: Protein of unknown function DUF891; KEGG: afr:AFE_1384 hypothetical protein
YP_004784693.1	KEGG: afr:AFE_1383 hypothetical protein
YP_004784694.1	KEGG: afr:AFE_0889 stability protein StbD, putative
YP_004784695.1	KEGG: afr:AFE_0890 stability protein StbE, putative; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system
YP_004784696.1	TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: cyn:Cyan7425_3081 type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicase, N-terminal
YP_004784697.1	PFAM: Protein of unknown function DUF45; KEGG: afr:AFE_0760 hypothetical protein
YP_004784698.1	KEGG: afr:AFE_0577 hypothetical protein
YP_004784699.1	KEGG: afe:Lferr_0730 para-aminobenzoate synthase subunit I; TIGRFAM: Para-aminobenzoate synthase, component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal
YP_004784700.1	KEGG: afr:AFE_0575 type I secretion outer membrane protein, TolC family; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein
YP_004784701.1	KEGG: afr:AFE_0559 integral membrane protein MviN; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN
YP_004784702.1	PFAM: Protein of unknown function DUF2203; KEGG: afe:Lferr_0713 hypothetical protein
YP_004784703.1	TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: afr:AFE_0557 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase
YP_004784704.1	TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; HAMAP: Isoleucyl-tRNA synthetase; KEGG: afr:AFE_0556 isoleucyl-tRNA synthetase
YP_004784705.1	TIGRFAM: Peptidase A8, signal peptidase II; HAMAP: Peptidase A8, signal peptidase II; KEGG: afr:AFE_0555 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II
YP_004784706.1	KEGG: afr:AFE_0554 hypothetical protein
YP_004784707.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: gvi:gll2154 oxidoreductase
YP_004784708.1	PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: afr:AFE_0553 hypothetical protein
YP_004784709.1	KEGG: afr:AFE_0552 ABC transporter, permease/ATP-binding protein; PFAM: ABC transporter, N-terminal; ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004784710.1	KEGG: hna:Hneap_1146 hypothetical protein
YP_004784711.1	PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: afr:AFE_0551 hydrolase, carbon-nitrogen family
YP_004784712.1	KEGG: afe:Lferr_0705 membrane protein
YP_004784713.1	KEGG: afr:AFE_0548 glutamate-ammonia-ligase adenylyltransferase; HAMAP: Glutamate-ammonia-ligase adenylyltransferase; PFAM: Glutamate-ammonia ligase adenylyltransferase; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase
YP_004784714.1	KEGG: afr:AFE_0547 branched-chain amino acid aminotransferase; TIGRFAM: Branched-chain amino acid aminotransferase I; PFAM: Aminotransferase, class IV
YP_004784715.1	KEGG: afr:AFE_0546 hypothetical protein
YP_004784716.1	KEGG: afr:AFE_0545 thiol:disulfide interchange protein DsbD; HAMAP: Thiol:disulfide interchange protein dsbD; PFAM: Cytochrome c assembly protein, transmembrane region; Thioredoxin domain
YP_004784718.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: afr:AFE_0544 hypothetical protein
YP_004784719.1	KEGG: afr:AFE_0543 co-chaperonin GroES; HAMAP: Chaperonin Cpn10, subgroup; PFAM: Chaperonin Cpn10
YP_004784720.1	TIGRFAM: Chaperonin Cpn60; HAMAP: 60 kDa chaperonin; KEGG: afr:AFE_0542 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1
YP_004784721.1	KEGG: ppd:Ppro_0946 hypothetical protein
YP_004784722.1	KEGG: ppd:Ppro_0945 hypothetical protein
YP_004784723.1	PFAM: Phosphoribosyltransferase; KEGG: afr:AFE_0540 adenine phosphoribosyltransferase
YP_004784724.1	PFAM: Sulphate adenylyltransferase; Adenylylsulphate kinase, C-terminal; TIGRFAM: Adenylylsulphate kinase, C-terminal; HAMAP: Adenylyl-sulfate kinase; KEGG: afr:AFE_0539 sulfate adenylyltransferase, putative/adenylylsulfate kinase
YP_004784725.1	PFAM: Protein of unknown function DUF814; Fibronectin-binding A, N-terminal; KEGG: afr:AFE_0538 hypothetical protein
YP_004784726.1	KEGG: hoh:Hoch_2836 MerR family transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004784727.1	KEGG: tbd:Tbd_1341 putative mercuric reductase; TIGRFAM: Mercuric reductase MerA; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004784729.1	KEGG: afr:AFE_1652 oxidoreductase alpha (molybdopterin) subunit; TIGRFAM: Oxidoreductase alpha (molybdopterin) subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region
YP_004784730.1	KEGG: afr:AFE_1653 hypothetical protein
YP_004784731.1	TIGRFAM: Formate dehydrogenase, subunit FdhD; HAMAP: Protein fdhD; KEGG: afr:AFE_1654 formate dehydrogenase family accessory protein FdhD; PFAM: Formate dehydrogenase, subunit FdhD
YP_004784732.1	KEGG: gvi:glr4425 glutathione dependent formaldehyde dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like
YP_004784733.1	PFAM: Protein of unknown function DUF347; KEGG: afr:AFE_2330 hypothetical protein
YP_004784734.1	KEGG: yen:YE1183 hypothetical protein
YP_004784735.1	KEGG: pag:PLES_13401 hypotjetical protein
YP_004784736.1	KEGG: rba:RB818 reverse transcriptase/maturase; manually curated; PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific
YP_004784737.1	PFAM: Transposase IS3/IS911; KEGG: tin:Tint_3219 transposase IS3/IS911 family protein
YP_004784738.1	PFAM: Integrase, catalytic core; KEGG: tin:Tint_3218 integrase catalytic region
YP_004784739.1	PFAM: Protein of unknown function DUF262; Protein of unknown function DUF1524 RloF; KEGG: drm:Dred_1817 hypothetical protein
YP_004784740.1	KEGG: pna:Pnap_4606 superfamily I DNA/RNA helicase
YP_004784741.1	SMART: Nucleotide binding protein, PINc; KEGG: pna:Pnap_4605 nucleotide binding protein, PINc
YP_004784742.1	KEGG: pna:Pnap_4604 hypothetical protein
YP_004784743.1	KEGG: pna:Pnap_4603 ATPase; PFAM: ATPase associated with various cellular activities, AAA-2; SMART: ATPase, AAA+ type, core
YP_004784744.1	KEGG: pna:Pnap_4602 radical SAM domain-containing protein
YP_004784745.1	PFAM: Radical SAM; KEGG: pau:PA14_03340 hypothetical protein
YP_004784746.1	TIGRFAM: Histidinol phosphate phosphatase, HisJ; PFAM: PHP, C-terminal; KEGG: pau:PA14_03330 hypothetical protein; SMART: Polymerase/histidinol phosphatase, N-terminal
YP_004784747.1	KEGG: pau:PA14_03320 hypothetical protein
YP_004784748.1	PFAM: Integrase, catalytic core; KEGG: bxe:Bxe_A1791 putative transposase catalytic subunit
YP_004784749.1	KEGG: afr:AFE_2413 transposase, degenerate; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004784750.1	KEGG: pau:PA14_03310 hypothetical protein
YP_004784751.1	KEGG: pau:PA14_03310 hypothetical protein
YP_004784752.1	PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: cph:Cpha266_2270 transposase, IS204/IS1001/IS1096/IS1165 family protein
YP_004784754.1	PFAM: Transposase, IS4-like; KEGG: eba:p2A221 transposase
YP_004784756.1	KEGG: rpx:Rpdx1_2916 hypothetical protein
YP_004784757.1	KEGG: afe:Lferr_1430 hypothetical protein
YP_004784758.1	PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; KEGG: dar:Daro_3822 RNA-directed DNA polymerase (reverse transcriptase)
YP_004784761.1	PFAM: PilT protein, N-terminal
YP_004784762.1	KEGG: sbl:Sbal_4350 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core
YP_004784763.1	PFAM: Transposase, IS4-like; KEGG: afe:Lferr_1749 hypothetical protein
YP_004784765.1	PFAM: Integrase, catalytic core, phage; KEGG: lch:Lcho_0776 integrase family protein
YP_004784766.1	KEGG: afr:AFE_2785 hypothetical protein
YP_004784767.1	PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; KEGG: afr:AFE_0846 alcohol dehydrogenase, zinc-containing
YP_004784768.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: pla:Plav_1952 Rieske (2Fe-2S) domain-containing protein
YP_004784769.1	KEGG: tcx:Tcr_1803 beta-lactamase-like
YP_004784770.1	PFAM: Creatininase; KEGG: dar:Daro_0078 creatininase
YP_004784771.1	KEGG: slt:Slit_0094 glutamine synthetase, type III; TIGRFAM: Glutamine synthetase, type III; PFAM: Glutamine synthetase, catalytic region
YP_004784772.1	KEGG: bav:BAV0701 lactoylglutathione lyase; TIGRFAM: Glyoxalase I; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_004784773.1	PFAM: Transposase, IS116/IS110/IS902; KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein
YP_004784774.1	KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein
YP_004784775.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: pth:PTH_2894 dehydrogenases with different specificities
YP_004784776.1	PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: pla:Plav_1952 Rieske (2Fe-2S) domain-containing protein
YP_004784777.1	PFAM: Transposase, IS116/IS110/IS902; KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein
YP_004784778.1	KEGG: afr:AFE_1709 ISAfe4, tranposase orf1
YP_004784779.1	PFAM: Transposase (putative), IS66 Orf2 like; KEGG: afe:Lferr_1327 IS66 Orf2 family protein
YP_004784780.1	PFAM: Protein of unknown function DUF6, transmembrane; KEGG: amv:ACMV_06240 hypothetical protein
YP_004784781.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: afr:AFE_3291 NAD-dependent epimerase/dehydratase family protein
YP_004784782.1	PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; KEGG: bur:Bcep18194_C7699 ferredoxin
YP_004784783.1	PFAM: Flavodoxin-like fold; KEGG: gmc:GY4MC1_1805 NAD(P)H dehydrogenase (quinone)
YP_004784784.1	PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: apt:APA01_41980 cytosine/purines/uracil/thiamine/allantoin transporter
YP_004784785.1	PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: afr:AFE_3183 ISAfe1, transposase
YP_004784788.1	KEGG: sea:SeAg_B2096 DNA-binding prophage protein
YP_004784789.1	PFAM: RecF/RecN/SMC protein, N-terminal; KEGG: neu:NE1392 ABC transporter ATPase
YP_004784790.1	KEGG: maq:Maqu_0567 nuclease SbcCD, D subunit; TIGRFAM: Exonuclease SbcD; PFAM: Metallophosphoesterase
YP_004784791.1	PFAM: Protein of unknown function DUF1819, putative inner membrane; KEGG: cpb:Cphamn1_1682 hypothetical protein
YP_004784792.1	PFAM: Protein of unknown function DUF1788; KEGG: cpb:Cphamn1_1681 hypothetical protein
YP_004784793.1	KEGG: cpb:Cphamn1_1680 hypothetical protein
YP_004784794.1	KEGG: cpb:Cphamn1_1677 hypothetical protein
YP_004784795.1	PFAM: ATPase associated with various cellular activities, AAA-4; KEGG: gca:Galf_0893 putative transcriptional regulator
YP_004784796.1	KEGG: cpb:Cphamn1_1677 hypothetical protein
YP_004784797.1	PFAM: RecF/RecN/SMC protein, N-terminal; KEGG: ddc:Dd586_0435 SMC domain-containing protein
YP_004784798.1	KEGG: ddc:Dd586_0434 hypothetical protein
YP_004784799.1	KEGG: dvu:DVU2020 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02687; PFAM: PglZ domain
YP_004784800.1	TIGRFAM: Conserved hypothetical protein CHP02688; KEGG: cpb:Cphamn1_1675 hypothetical protein
YP_004784801.1	KEGG: afe:Lferr_2037 hypothetical protein
YP_004784803.1	PFAM: Integrase, catalytic core, phage; KEGG: dds:Ddes_0438 hypothetical protein
YP_004784804.1	KEGG: afe:Lferr_1970 RNA polymerase sigma-70 subunit RpoD; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, non-essential region; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4
YP_004784805.1	KEGG: afr:AFE_2337 DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; DNA primase, DnaB-helicase binding domain
YP_004784806.1	KEGG: afr:AFE_2338 MutS2 family protein; PFAM: DNA mismatch repair protein MutS, C-terminal; Smr protein/MutS2 C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; Smr protein/MutS2 C-terminal
YP_004784807.1	KEGG: afr:AFE_2339 GatB/YqeY domain protein
YP_004784808.1	TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: afr:AFE_2340 30S ribosomal protein S21; PFAM: Ribosomal protein S21
YP_004784809.1	KEGG: afr:AFE_2342 RNA polymerase sigm-70 factor family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4
YP_004784810.1	TIGRFAM: Ham1-like protein; HAMAP: Nucleoside-triphosphatase rdgB; KEGG: afr:AFE_2341 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; PFAM: Ham1-like protein
YP_004784811.1	TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; HAMAP: Ribonuclease phosphorolytic, bacterial-type; KEGG: afr:AFE_2343 ribonuclease PH; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2
YP_004784812.1	KEGG: afr:AFE_2344 cyclic nucleotide-binding domain protein; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding
YP_004784813.1	KEGG: afr:AFE_2345 ATP-dependent protease La domain protein; PFAM: Peptidase S16, lon N-terminal; SMART: Peptidase S16, lon N-terminal
YP_004784814.1	TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; KEGG: afr:AFE_2346 oxygen-independent coproporphyrinogen III oxidase, putative; SMART: Elongator protein 3/MiaB/NifB
YP_004784815.1	KEGG: afr:AFE_2347 hypothetical protein
YP_004784816.1	SMART: RNA-binding S4; manually curated; KEGG: afe:Lferr_1982 pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4
YP_004784817.1	KEGG: afr:AFE_2349 multidrug resistance protein; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1
YP_004784818.1	PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; KEGG: afr:AFE_2350 D-alanyl-D-alanine carboxypeptidase, putative
YP_004784819.1	PFAM: Protein of unknown function DUF81; KEGG: afr:AFE_2351 hypothetical protein
YP_004784820.1	PFAM: Methyltransferase type 11; KEGG: afr:AFE_2352 hypothetical protein
YP_004784821.1	PFAM: PilT protein, N-terminal; KEGG: lch:Lcho_4334 PilT domain-containing protein
YP_004784822.1	KEGG: nwa:Nwat_2445 Arc domain-/DNA-binding domain-containing protein
YP_004784823.1	KEGG: avn:Avin_52410 hypothetical protein
YP_004784824.1	KEGG: geo:Geob_2869 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal
YP_004784825.1	KEGG: mca:MCA1889 hypothetical protein
YP_004784826.1	KEGG: afr:AFE_2354 phosphoribosylformylglycinamidine synthase; TIGRFAM: Phosphoribosylformylglycinamidine synthase, eukaryote/proteobacteria; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein
YP_004784827.1	TIGRFAM: SAICAR synthetase; HAMAP: Phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: afr:AFE_2355 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase
YP_004784828.1	KEGG: afr:AFE_2356 adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; PFAM: Fumarate lyase; Adenylosuccinate lyase, C-terminal
YP_004784829.1	KEGG: afr:AFE_2357 lipoprotein, putative
YP_004784830.1	TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: afr:AFE_2358 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase
YP_004784831.1	KEGG: afr:AFE_2360 channel protein, hemolysin III family; TIGRFAM: HylII; PFAM: Hly-III related
YP_004784832.1	KEGG: afr:AFE_2361 N-acetylmuramoyl-L-alanine amidase, putative; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic
YP_004784833.1	KEGG: afr:AFE_2362 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain
YP_004784834.1	KEGG: afr:AFE_2363 glutaredoxin 3; TIGRFAM: Glutaredoxin, GrxC; PFAM: Glutaredoxin
YP_004784835.1	KEGG: afr:AFE_2364 rhodanese-like domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like
YP_004784836.1	KEGG: afr:AFE_2365 hypothetical protein
YP_004784837.1	PFAM: Acriflavin resistance protein; KEGG: afr:AFE_2366 transporter, AcrB/AcrD/AcrF family
YP_004784838.1	KEGG: afr:AFE_2367 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD
YP_004784839.1	PFAM: Outer membrane efflux protein; KEGG: afr:AFE_2368 outer membrane efflux protein
YP_004784841.1	KEGG: afr:AFE_2369 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR
YP_004784842.1	KEGG: afr:AFE_2383 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related
YP_004784843.1	KEGG: afr:AFE_2384 hypothetical protein
YP_004784844.1	PFAM: Sterol-binding; KEGG: afr:AFE_2385 SCP-2 sterol transfer family protein
YP_004784845.1	PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: afr:AFE_2386 HesA/MoeB/ThiF family protein
YP_004784846.1	KEGG: afr:AFE_2387 hydrolase, TatD family; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related
YP_004784847.1	KEGG: afr:AFE_2388 2-octaprenyl-6-methoxyphenol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Monooxygenase, FAD-binding
YP_004784848.1	KEGG: afr:AFE_2389 2-octaprenyl-6-methoxyphenol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: FAD dependent oxidoreductase
YP_004784849.1	PFAM: Protein of unknown function DUF526; KEGG: afr:AFE_2390 hypothetical protein
YP_004784850.1	TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: tbd:Tbd_0237 Mg chelatase-related protein; SMART: ATPase, AAA+ type, core
YP_004784851.1	PFAM: Catalase related subgroup; Catalase-related immune responsive; KEGG: hau:Haur_0032 catalase
YP_004784852.1	PFAM: Sel1-like; KEGG: afr:AFE_2513 hypothetical protein
YP_004784853.1	TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; HAMAP: Peptide chain release factor 3; KEGG: afr:AFE_2514 peptide chain release factor 3; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2
YP_004784854.1	KEGG: afr:AFE_2515 ribosomal-protein-alanine acetyltransferase; TIGRFAM: Ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase
YP_004784855.1	KEGG: afr:AFE_2516 hypothetical protein; TIGRFAM: universal protein YeaZ; PFAM: Peptidase M22, glycoprotease
YP_004784856.1	SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; KEGG: afr:AFE_2517 ATP-dependent helicase, DEXD family
YP_004784857.1	KEGG: afr:AFE_2519 hypothetical protein
YP_004784858.1	KEGG: afr:AFE_1853 hypothetical protein
YP_004784859.1	manually curated; KEGG: afr:AFE_1852 hypothetical protein
YP_004784860.1	PFAM: NLP/P60; KEGG: afr:AFE_2520 NLP/P60 family protein
YP_004784862.1	KEGG: tin:Tint_0706 hypothetical protein
YP_004784863.1	PFAM: Carbohydrate-selective porin OprB; KEGG: afr:AFE_2522 carbohydrate-selective porin, OprB family
YP_004784864.1	PFAM: Ferrous iron transporter, FeoA subunit; KEGG: afr:AFE_2523 FeoA family protein
YP_004784865.1	KEGG: afe:Lferr_2152 ferrous iron transport protein B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B, N-terminal; Nucleoside recognition; Ferrous iron transport protein B, C-terminal
YP_004784866.1	PFAM: FeoC like transcriptional regulator; KEGG: afr:AFE_2525 hypothetical protein
YP_004784867.1	KEGG: afr:AFE_2526 hydrolase, carbon-nitrogen family; TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase
YP_004784868.1	PFAM: Peptidase C26; KEGG: afr:AFE_2528 glutamine amidotransferase, class I
YP_004784869.1	PFAM: SNARE associated Golgi protein; KEGG: afr:AFE_2527 membrane protein, DedA family
YP_004784870.1	KEGG: afr:AFE_2529 hypothetical protein
YP_004784871.1	KEGG: afr:AFE_2530 hypothetical protein
YP_004784872.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_2531 transcriptional regulator, LysR family
YP_004784873.1	KEGG: afr:AFE_2532 hypothetical protein
YP_004784874.1	PFAM: Aldo/keto reductase; KEGG: afr:AFE_2533 oxidoreductase, aldo/keto reductase family
YP_004784875.1	PFAM: Histone deacetylase superfamily; KEGG: afe:Lferr_2162 histone deacetylase superfamily
YP_004784876.1	SMART: von Willebrand factor, type A; KEGG: afe:Lferr_2163 von Willebrand factor type A
YP_004784877.1	PFAM: ATPase associated with various cellular activities, AAA-5; CbbQ/NirQ/NorQ C-terminal; KEGG: afr:AFE_2536 CbbQ/NirQ/NorQ/GpvN family protein
YP_004784878.1	KEGG: afr:AFE_2537 hypothetical protein
YP_004784879.1	KEGG: afe:Lferr_2166 hypothetical protein
YP_004784880.1	KEGG: afe:Lferr_2167 hypothetical protein
YP_004784881.1	PFAM: Biotin/lipoate A/B protein ligase; KEGG: afe:Lferr_2168 biotin/lipoate A/B protein ligase
YP_004784882.1	KEGG: afr:AFE_2541 hypothetical protein
YP_004784883.1	PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: afr:AFE_2542 outer membrane protein, OMPP1/FadL/TodX family
YP_004784884.1	KEGG: afr:AFE_2543 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB
YP_004784885.1	KEGG: afr:AFE_2544 geranylgeranyl reductase family protein; TIGRFAM: Geranylgeranyl reductase, plant/prokaryotic; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal
YP_004784886.1	PFAM: Biotin/lipoate A/B protein ligase; KEGG: afr:AFE_2545 lipoate-protein ligase A, putative
YP_004784887.1	KEGG: afr:AFE_2546 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB
YP_004784888.1	KEGG: afr:AFE_2547 glycine cleavage system H protein, putative; HAMAP: Glycine cleavage H-protein; PFAM: Glycine cleavage H-protein
YP_004784889.1	KEGG: afr:AFE_2548 hypothetical protein
YP_004784890.1	PFAM: Glycine cleavage H-protein; KEGG: afr:AFE_2549 glycine cleavage system protein H, putative
YP_004784891.1	PFAM: Cysteine-rich region, CCG; KEGG: afr:AFE_2550 succinate dehydrogenase/fumarate reductase, C subunit
YP_004784892.1	KEGG: afr:AFE_2551 iron-sulfur cluster-binding protein
YP_004784893.1	KEGG: afr:AFE_2552 hypothetical protein
YP_004784894.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afr:AFE_2553 pyridine nucleotide-disulfide oxidoreductase
YP_004784895.1	PFAM: Cysteine-rich region, CCG; KEGG: afr:AFE_2554 heterodisulfide reductase subunit B, homolog
YP_004784896.1	KEGG: afr:AFE_2555 iron-sulfur cluster-binding protein
YP_004784897.1	KEGG: afr:AFE_2556 hypothetical protein
YP_004784898.1	PFAM: SirA-like; KEGG: afr:AFE_2557 hypothetical protein
YP_004784899.1	KEGG: afr:AFE_2558 rhodanese-like domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like
YP_004784900.1	TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum cofactor synthesis C-terminal; Radical SAM; KEGG: afr:AFE_2559 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB
YP_004784901.1	PFAM: DMSO reductase anchor subunit (DmsC); KEGG: tkm:TK90_0146 DMSO reductase anchor subunit (DmsC)
YP_004784902.1	PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: tbd:Tbd_0571 DMSO reductase chain B
YP_004784903.1	PFAM: Molybdopterin oxidoreductase Fe4S4 region; Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region; KEGG: tkm:TK90_0144 nitrate reductase
YP_004784904.1	KEGG: afr:AFE_2560 hypothetical protein
YP_004784905.1	KEGG: afr:AFE_2561 molybdenum cofactor biosynthesis protein C; TIGRFAM: Molybdopterin cofactor biosynthesis MoaC region; PFAM: Molybdopterin cofactor biosynthesis MoaC region
YP_004784906.1	KEGG: drt:Dret_0095 phosphonate ABC transporter, periplasmic phosphonate-binding protein
YP_004784907.1	KEGG: afr:AFE_0026 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region
YP_004784908.1	KEGG: afr:AFE_0027 sigma-54 dependent transcriptional regulator/response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core
YP_004784909.1	KEGG: mgm:Mmc1_3716 thiosulfate-binding protein SoxY
YP_004784910.1	PFAM: Sulphur oxidation protein SoxZ; KEGG: aae:aq_1809 hypothetical protein
YP_004784911.1	PFAM: Protein of unknown function DUF302; KEGG: mgm:Mmc1_3713 hypothetical protein
YP_004784912.1	PFAM: 5'-Nucleotidase, C-terminal; KEGG: slt:Slit_1696 5'-nucleotidase domain protein
YP_004784913.1	KEGG: afr:AFE_2562 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl
YP_004784914.1	KEGG: afr:AFE_2563 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC
YP_004784915.1	TIGRFAM: Cell shape-determining protein MreD; KEGG: afr:AFE_2564 rod shape-determining protein MreD, putative
YP_004784916.1	KEGG: afr:AFE_2565 penicillin-binding protein 2
YP_004784917.1	KEGG: afe:Lferr_2196 rod shape-determining protein RodA; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein
YP_004784918.1	PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: afr:AFE_2567 D-alanyl-D-alanine carboxypeptidase
YP_004784919.1	PFAM: Protein of unknown function DUF493; KEGG: afe:Lferr_2198 hypothetical protein
YP_004784920.1	TIGRFAM: Octanoyltransferase; HAMAP: Octanoyltransferase; KEGG: afr:AFE_2569 lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase
YP_004784921.1	SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Lipoate synthase; KEGG: afr:AFE_2570 lipoyl synthase; HAMAP: Lipoate synthase; PFAM: Radical SAM
YP_004784922.1	PFAM: Protein of unknown function DUF218; KEGG: afr:AFE_2571 hypothetical protein
YP_004784923.1	PFAM: YkuD domain; KEGG: afe:Lferr_2202 ErfK/YbiS/YcfS/YnhG family protein
YP_004784924.1	KEGG: afr:AFE_2573 hypothetical protein
YP_004784926.1	KEGG: afr:AFE_2574 hypothetical protein
YP_004784927.1	KEGG: afr:AFE_2575 hypothetical protein
YP_004784928.1	KEGG: afr:AFE_2576 small GTP-binding protein; TIGRFAM: Small GTP-binding protein; PFAM: Protein of unknown function, ATP binding
YP_004784929.1	KEGG: afr:AFE_2577 hypothetical protein
YP_004784930.1	PFAM: Dynein light chain-related; KEGG: afr:AFE_2578 roadblock/LC7 domain protein
YP_004784931.1	TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: afr:AFE_2580 glycyl-tRNA synthetase subunit alpha; PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit
YP_004784932.1	TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; HAMAP: Glycyl-tRNA synthetase beta subunit; KEGG: afr:AFE_2581 glycyl-tRNA synthetase, beta subunit; PFAM: Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal
YP_004784933.1	KEGG: afr:AFE_2582 histidinol-phosphate phosphatase domain protein; TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; PFAM: Haloacid dehalogenase-like hydrolase
YP_004784934.1	KEGG: afr:AFE_2584 acyltransferase family protein; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_004784935.1	KEGG: afr:AFE_2583 alpha-L-glutamate ligase, RimK family; TIGRFAM: S6 modification enzyme RimK; PFAM: ATP-grasp fold, RimK-type
YP_004784936.1	KEGG: afr:AFE_2585 hypothetical protein
YP_004784937.1	PFAM: Cysteine-rich region, CCG; KEGG: afr:AFE_2554 heterodisulfide reductase subunit B, homolog
YP_004784938.1	KEGG: afr:AFE_2587 hypothetical protein
YP_004784939.1	KEGG: afr:AFE_1861 pterin-4-alpha-carbinolamine dehydratase; HAMAP: pterin-4-alpha-carbinolamine dehydratase; PFAM: Transcriptional coactivator/pterin dehydratase
YP_004784940.1	PFAM: Protein of unknown function DUF208; KEGG: afr:AFE_2588 hypothetical protein
YP_004784941.1	KEGG: afr:AFE_2589 N-acetyl-anhydromuranmyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2
YP_004784942.1	KEGG: afr:AFE_2590 thioredoxin, putative
YP_004784943.1	KEGG: afr:AFE_2596 2-isopropylmalate synthase; TIGRFAM: Bacterial 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain
YP_004784944.1	KEGG: afr:AFE_2593 hypothetical protein
YP_004784945.1	KEGG: afr:AFE_1745 hypothetical protein
YP_004784946.1	KEGG: afr:AFE_2607 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004784947.1	SMART: Histone-like bacterial DNA-binding protein; TIGRFAM: Integration host factor, alpha subunit; KEGG: afr:AFE_2608 integration host factor, alpha subunit; HAMAP: Integration host factor, alpha subunit; PFAM: Histone-like bacterial DNA-binding protein
YP_004784948.1	TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: afr:AFE_2609 phenylalanyl-tRNA synthetase, beta subunit
YP_004784949.1	TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; KEGG: afr:AFE_2610 phenylalanyl-tRNA synthetase subunit alpha; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal
YP_004784950.1	TIGRFAM: Ribosomal protein L20; HAMAP: Ribosomal protein L20; KEGG: afr:AFE_2611 50S ribosomal protein L20; PFAM: Ribosomal protein L20
YP_004784951.1	TIGRFAM: Ribosomal protein L35; HAMAP: Ribosomal protein L35; KEGG: afr:AFE_2612 50S ribosomal protein L35; PFAM: Ribosomal protein L35
YP_004784952.1	TIGRFAM: Translation initiation factor 3; HAMAP: Translation initiation factor IF-3; KEGG: afr:AFE_2613 translation initiation factor IF-3; PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal
YP_004784953.1	KEGG: afr:AFE_2614 threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding
YP_004784954.1	KEGG: afr:AFE_3120 hypothetical protein
YP_004784955.1	TIGRFAM: NADH-quinone oxidoreductase, chain N; HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; KEGG: afr:AFE_2617 NADH-quinone oxidoreductase, N subunit; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004784956.1	KEGG: afr:AFE_2618 NADH-quinone oxidoreductase, M subunit; TIGRFAM: NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase
YP_004784957.1	KEGG: afe:Lferr_2246 proton-translocating NADH-quinone oxidoreductase subunit L; TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal
YP_004784958.1	KEGG: afr:AFE_2620 NADH-quinone oxidoreductase, K subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L
YP_004784959.1	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: afr:AFE_2621 NADH-quinone oxidoreductase, J subunit
YP_004784960.1	TIGRFAM: NADH-quinone oxidoreductase, chain I; HAMAP: NADH-quinone oxidoreductase, chain I; KEGG: afr:AFE_2622 NADH dehydrogenase subunit I; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup
YP_004784961.1	KEGG: afr:AFE_2623 NADH-quinone oxidoreductase, H subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit 1; PFAM: NADH:ubiquinone oxidoreductase, subunit 1
YP_004784962.1	KEGG: afr:AFE_2624 NADH-quinone oxidoreductase, G subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit G; PFAM: Molybdopterin oxidoreductase; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region
YP_004784963.1	KEGG: afr:AFE_2625 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding
YP_004784964.1	KEGG: afr:AFE_2626 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit
YP_004784965.1	TIGRFAM: NADH dehydrogenase I, D subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit H; KEGG: afr:AFE_2627 NADH dehydrogenase subunit D; PFAM: NADH-quinone oxidoreductase, subunit D
YP_004784966.1	TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; HAMAP: NAD(P)H-quinone oxidoreductase subunit J; KEGG: afr:AFE_2628 NADH-quinone oxidoreductase, C subunit; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit
YP_004784967.1	TIGRFAM: NADH:ubiquinone oxidoreductase, 20kDa subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit K; KEGG: afr:AFE_2629 NADH dehydrogenase subunit B; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit
YP_004784968.1	KEGG: afr:AFE_2630 NADH-quinone oxidoreductase, A subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3
YP_004784969.1	KEGG: afr:AFE_2632 preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit
YP_004784970.1	KEGG: afr:AFE_2633 triosephosphate isomerase; TIGRFAM: Triosephosphate isomerase; PFAM: Triosephosphate isomerase
YP_004784971.1	KEGG: afr:AFE_2634 phosphoglucosamine mutase; TIGRFAM: Phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal
YP_004784972.1	KEGG: afr:AFE_2635 dihydropteroate synthase; TIGRFAM: Dihydropteroate synthase; PFAM: Dihydropteroate synthase, DHPS
YP_004784973.1	TIGRFAM: Peptidase M41, FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; KEGG: afr:AFE_2636 cell division protein FtsH; SMART: ATPase, AAA+ type, core
YP_004784974.1	PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: afr:AFE_2637 TldD protein
YP_004784975.1	KEGG: afr:AFE_2638 ribonucleotide-diphosphate reductase, alpha subunit; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ATP-cone
YP_004784976.1	PFAM: Ribonucleotide reductase; KEGG: afr:AFE_2639 ribonucleotide-diphosphate reductase subunit beta
YP_004784977.1	KEGG: sbm:Shew185_4002 hypothetical protein
YP_004784978.1	KEGG: nhl:Nhal_4020 hypothetical protein
YP_004784979.1	KEGG: bac:BamMC406_6734 hypothetical protein
YP_004784981.1	KEGG: kpe:KPK_A0235 hypothetical protein
YP_004784983.1	KEGG: cak:Caul_5232 hypothetical protein
YP_004784984.1	KEGG: afr:AFE_3189 hypothetical protein
YP_004784986.1	KEGG: psa:PST_0584 hypothetical protein
YP_004784988.1	KEGG: bgf:BC1003_0016 hypothetical protein
YP_004784989.1	PFAM: Integrase, catalytic core; KEGG: mms:mma_0807 hypothetical protein
YP_004784990.1	SMART: ATPase, AAA+ type, core; KEGG: mms:mma_0806 hypothetical protein
YP_004784991.1	KEGG: rpf:Rpic12D_4722 hypothetical protein
YP_004784993.1	PFAM: Nucleotidyltransferase; KEGG: gpb:HDN1F_30740 DNA polymerase, beta-like region
YP_004784994.1	PFAM: Protein of unknown function DUF86; KEGG: avn:Avin_50240 hypothetical protein
YP_004784995.1	KEGG: xop:PXO_04731 transposase TnpA, ISL3 family
YP_004784997.1	PFAM: Protein of unknown function DUF6, transmembrane; KEGG: hna:Hneap_1754 protein of unknown function DUF6 transmembrane
YP_004784998.1	PFAM: Class II aldolase/adducin, N-terminal; KEGG: bts:Btus_2794 class II aldolase/adducin family protein
YP_004784999.1	PFAM: Transcriptional regulator PadR N-terminal-like; KEGG: bts:Btus_2793 transcriptional regulator, PadR-like family
YP_004785000.1	PFAM: Carboxymuconolactone decarboxylase; KEGG: afo:Afer_1875 carboxymuconolactone decarboxylase
YP_004785002.1	SMART: Rhodanese-like; KEGG: lch:Lcho_1075 rhodanese domain-containing protein
YP_004785004.1	PFAM: Cytochrome c oxidase, subunit III; KEGG: afr:AFE_0633 cytochrome o ubiquinol oxidase, subunit III
YP_004785005.1	PFAM: Cytochrome c oxidase, subunit I; KEGG: afe:Lferr_0782 cytochrome-c oxidase
YP_004785006.1	PFAM: Cytochrome c oxidase subunit II C-terminal; COX aromatic rich; KEGG: afr:AFE_0631 cytochrome o ubiquinol oxidase, subunit II
YP_004785007.1	PFAM: Protein of unknown function DUF1641
YP_004785008.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tin:Tint_1281 FAD-dependent pyridine nucleotide-disulfide oxidoreductase
YP_004785009.1	PFAM: Sulphur oxygenase reductase; KEGG: hna:Hneap_1222 sulfur oxygenase/reductase
YP_004785010.1	KEGG: sto:ST2470 hypothetical protein; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat
YP_004785011.1	KEGG: afr:AFE_0042 Tat (twin-arginine translocation) pathway signal sequence domain protein
YP_004785012.1	PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; KEGG: pen:PSEEN4255 sodium/hydrogen exchanger family protein
YP_004785013.1	KEGG: alv:Alvin_3239 hypothetical protein
YP_004785014.1	KEGG: afr:AFE_1070 DNA-binding protein, HU family; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein
YP_004785015.1	KEGG: afe:Lferr_0253 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF167
YP_004785016.1	KEGG: afr:AFE_1865 hypothetical protein
YP_004785019.1	KEGG: afr:AFE_1198 hypothetical protein
YP_004785020.1	PFAM: YkuD domain; KEGG: afr:AFE_2089 hypothetical protein
YP_004785021.1	KEGG: syn:sll1641 glutamate decarboxylase; TIGRFAM: Glutamate decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase
YP_004785022.1	PFAM: Phospholipase D/Transphosphatidylase; KEGG: mxa:MXAN_0537 putative cardiolipin synthase
YP_004785023.1	manually curated; KEGG: eba:ebA3243 IS5 family transposase
YP_004785024.1	PFAM: Transposase (putative), IS66 Orf2 like; KEGG: eba:ebB23 transpoase helper protein
YP_004785025.1	PFAM: Transposase, IS66; KEGG: eba:ebA859 transposase
YP_004785026.1	PFAM: Transposase, IS116/IS110/IS902; KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein
YP_004785027.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; DoxX; KEGG: afr:AFE_0098 DoxD family protein/pyridine nucleotide-disulfide oxidoreductase
YP_004785029.1	PFAM: Flavodoxin/nitric oxide synthase; FAD-binding, type 1; Oxidoreductase FAD/NAD(P)-binding; KEGG: afr:AFE_3121 sulfite reductase (NADPH) flavoprotein, alpha component
YP_004785030.1	TIGRFAM: Sulphite reductase (NADPH) hemoprotein, beta subunit; HAMAP: Sulfite reductase [NADPH] hemoprotein beta-component; KEGG: afr:AFE_3122 sulfite reductase (NADPH) hemoprotein beta-component; PFAM: Nitrite/sulphite reductase 4Fe-4S region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like
YP_004785031.1	KEGG: afr:AFE_3123 adenylylsulfate reductase, thioredoxin dependent; TIGRFAM: Adenylylsulphate reductase, thioredoxin dependent; Phosphoadenosine phosphosulphate reductase CysH-type; PFAM: Phosphoadenosine phosphosulphate reductase
YP_004785032.1	KEGG: afr:AFE_3124 sulfate adenylyltransferase subunit 2; TIGRFAM: Sulphate adenylyltransferase, small subunit; PFAM: Phosphoadenosine phosphosulphate reductase
YP_004785033.1	KEGG: afr:AFE_3125 sulfate adenylyltransferase, large subunit; TIGRFAM: Sulphate adenylyltransferase, large subunit; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2
YP_004785034.1	KEGG: afr:AFE_3126 uroporphyrin-III C-methyltransferase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; PFAM: Tetrapyrrole methylase
YP_004785035.1	KEGG: afr:AFE_3128 hypothetical protein
YP_004785036.1	PFAM: SirA-like; KEGG: afr:AFE_3117 hypothetical protein
YP_004785037.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afr:AFE_3118 pyridine nucleotide-disulfide oxidoreductase
YP_004785038.1	KEGG: afe:Lferr_2717 hypothetical protein
YP_004785039.1	KEGG: afr:AFE_0407 aspartate kinase, monofunctional class; TIGRFAM: Aspartate kinase region; Aspartate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT
YP_004785040.1	TIGRFAM: Acetylornithine/succinylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; KEGG: afr:AFE_0406 acetylornithine aminotransferase; PFAM: Aminotransferase class-III
YP_004785041.1	TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; KEGG: afr:AFE_0405 ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region
YP_004785042.1	TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: afr:AFE_0404 argininosuccinate synthase; PFAM: Argininosuccinate synthase
YP_004785043.1	PFAM: Protein of unknown function DUF1255; KEGG: afr:AFE_0403 hypothetical protein
YP_004785044.1	KEGG: afr:AFE_0402 lactoylglutathione lyase; TIGRFAM: Glyoxalase I; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase
YP_004785045.1	TIGRFAM: DNA polymerase 3, epsilon subunit; DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: afr:AFE_0400 DNA polymerase III, epsilon subunit; SMART: Exonuclease
YP_004785046.1	KEGG: afr:AFE_0399 ribonuclease HI; HAMAP: Ribonuclease H; PFAM: Ribonuclease H
YP_004785047.1	PFAM: Methyltransferase type 11; KEGG: afr:AFE_0398 hypothetical protein
YP_004785048.1	KEGG: afr:AFE_0397 hydroxyacylglutathione hydrolase, putative; TIGRFAM: Hydroxyacylglutathione hydrolase; HAMAP: Hydroxyacylglutathione hydrolase
YP_004785049.1	PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: afr:AFE_0396 peptidase, M16 family
YP_004785050.1	TIGRFAM: Polyribonucleotide nucleotidyltransferase; HAMAP: Polyribonucleotide nucleotidyltransferase; KEGG: afe:Lferr_0559 polyribonucleotide nucleotidyltransferase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA binding domain
YP_004785051.1	KEGG: afr:AFE_0394 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15
YP_004785052.1	TIGRFAM: Pseudouridine synthase II, TruB, N-terminal, bacterial-type; HAMAP: tRNA pseudouridine synthase B; KEGG: afr:AFE_0393 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II, TruB, N-terminal; Pseudouridine synthase II, TruB, subfamily 1, C-terminal, bacterial-type
YP_004785053.1	TIGRFAM: Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; KEGG: afr:AFE_0392 ribosome-binding factor A; PFAM: Ribosome-binding factor A
YP_004785054.1	KEGG: afr:AFE_0391 translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Initiation factor 2 associated region, bacterial; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2
YP_004785055.1	KEGG: afr:AFE_0390 transcription termination factor NusA; TIGRFAM: Transcription termination factor NusA; Transcription termination factor NusA, C-terminal duplication; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA binding domain
YP_004785056.1	KEGG: afe:Lferr_0553 hypothetical protein; HAMAP: Uncharacterised protein family UPF0090, bacteria; PFAM: Uncharacterised protein family UPF0090
YP_004785057.1	PFAM: YkuD domain; KEGG: afr:AFE_0382 ErfK/YbiS/YcfS/YnhG family protein
YP_004785058.1	KEGG: afr:AFE_0381 hypothetical protein
YP_004785059.1	PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Seryl-tRNA synthetase, class IIa, N-terminal; manually curated; TIGRFAM: Seryl-tRNA synthetase, class IIa; KEGG: afr:AFE_0380 seryl-tRNA synthetase; HAMAP: Seryl-tRNA synthetase
YP_004785060.1	KEGG: afr:AFE_0379 ATPase, AAA family; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core
YP_004785061.1	PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: afr:AFE_0378 outer membrane protein transport protein, OMPP1/FadL/TodX family
YP_004785062.1	TIGRFAM: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; HAMAP: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; KEGG: afr:AFE_0377 outer membrane lipoprotein carrier protein LolA, putative; PFAM: Outer membrane lipoprotein carrier protein LolA
YP_004785063.1	PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: afe:Lferr_0546 cell divisionFtsK/SpoIIIE
YP_004785064.1	KEGG: afr:AFE_0375 thioredoxin-disulfide reductase; TIGRFAM: Thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase
YP_004785065.1	KEGG: afr:AFE_0374 Smr domain protein; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal
YP_004785066.1	KEGG: afr:AFE_0373 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR
YP_004785067.1	TIGRFAM: Pseudouridine synthase, TruD; HAMAP: tRNA pseudouridine synthase D; KEGG: afr:AFE_0372 tRNA pseudouridine synthase D; PFAM: Pseudouridine synthase, TruD
YP_004785068.1	TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; KEGG: afe:Lferr_0541 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core
YP_004785069.1	TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; HAMAP: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; KEGG: afr:AFE_0370 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase
YP_004785070.1	TIGRFAM: Transcription-repair coupling factor; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Transcription factor CarD; DNA/RNA helicase, C-terminal; Transcription-repair-coupling factor; KEGG: afr:AFE_0369 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal
YP_004785071.1	PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: cph:Cpha266_2270 transposase, IS204/IS1001/IS1096/IS1165 family protein
YP_004785072.1	KEGG: afe:Lferr_0538 phosphoserine phosphatase SerB; TIGRFAM: Phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like; PFAM: Haloacid dehalogenase-like hydrolase
YP_004785073.1	KEGG: afr:AFE_0367 AhpC/TSA family/glutaredoxin domain protein; TIGRFAM: Glutaredoxin-like region; PFAM: Redoxin; Glutaredoxin
YP_004785074.1	KEGG: afr:AFE_0366 glutathione reductase; TIGRFAM: Glutathione reductase, animal/bacterial; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation
YP_004785075.1	KEGG: afr:AFE_0365 methylthioadenosine phosphorylase; TIGRFAM: Methylthioadenosine phosphorylase; PFAM: Nucleoside phosphorylase
YP_004785076.1	PFAM: Phosphoribosyltransferase; KEGG: afr:AFE_0364 hypoxanthine-guanine phosphoribosyltransferase, putative
YP_004785077.1	KEGG: afr:AFE_0363 hypothetical protein
YP_004785078.1	KEGG: afr:AFE_0362 hypothetical protein
YP_004785079.1	KEGG: afr:AFE_0361 hypothetical protein
YP_004785080.1	KEGG: afr:AFE_0360 PAP2 family protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase
YP_004785081.1	PFAM: Diacylglycerol kinase, prokaryotic; KEGG: afr:AFE_0359 diacylglycerol kinase
YP_004785082.1	KEGG: afr:AFE_0358 DNA repair protein RadC; TIGRFAM: DNA repair, RadC-like; PFAM: DNA repair, RadC-like
YP_004785083.1	KEGG: afr:AFE_0357 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: Flavoprotein; DNA/pantothenate metabolism flavoprotein, C-terminal
YP_004785084.1	KEGG: afr:AFE_0356 deoxyuridine 5`-triphosphate nucleotidohydrolase; TIGRFAM: DeoxyUTP pyrophosphatase domain, subfamily 1,; PFAM: DeoxyUTP pyrophosphatase domain
YP_004785085.1	TIGRFAM: Ribosomal protein L17; HAMAP: 50S ribosomal protein L17; KEGG: afr:AFE_0355 50S ribosomal protein L17; PFAM: Ribosomal protein L17
YP_004785086.1	SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; KEGG: afr:AFE_0354 DNA-directed RNA polymerase subunit alpha; HAMAP: DNA-directed RNA polymerase, alpha subunit; PFAM: DNA-directed RNA polymerase, insert; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal
YP_004785087.1	TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4; RNA-binding S4; KEGG: afr:AFE_0353 ribosomal protein S4; SMART: RNA-binding S4
YP_004785088.1	KEGG: afr:AFE_0352 ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11
YP_004785089.1	KEGG: afr:AFE_0351 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13
YP_004785090.1	PFAM: Ribosomal protein L36; manually curated; TIGRFAM: Ribosomal protein L36; KEGG: afr:AFE_0350 50S ribosomal protein L36; HAMAP: Ribosomal protein L36
YP_004785091.1	TIGRFAM: Translation initiation factor IF-1; HAMAP: Translation initiation factor IF-1; KEGG: afr:AFE_0349 translation initiation factor IF-1; PFAM: S1, IF1 type
YP_004785092.1	TIGRFAM: Adenylate kinase, subfamily; HAMAP: Adenylate kinase; KEGG: afe:Lferr_0518 nucleoside-triphosphate--adenylate kinase; PFAM: Adenylate kinase; Adenylate kinase, zinc-finger lid region
YP_004785093.1	KEGG: afr:AFE_0347 preprotein translocase, SecY subunit; TIGRFAM: SecY protein; PFAM: SecY protein
YP_004785094.1	KEGG: afr:AFE_0346 50S ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; PFAM: Ribosomal protein L15
YP_004785095.1	KEGG: afr:AFE_0345 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30p/L7e, conserved region
YP_004785096.1	KEGG: afr:AFE_0344 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal
YP_004785097.1	KEGG: afr:AFE_0343 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5
YP_004785098.1	KEGG: afr:AFE_0342 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain
YP_004785099.1	PFAM: Ribosomal protein S8; KEGG: afr:AFE_0341 30S ribosomal protein S8
YP_004785100.1	KEGG: afr:AFE_0340 30S ribosomal protein S14; manually curated; PFAM: Ribosomal protein S14
YP_004785101.1	PFAM: Ribosomal protein L5; KEGG: afr:AFE_0339 50S ribosomal protein L5
YP_004785102.1	TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: afr:AFE_0338 50S ribosomal protein L24; SMART: KOW
YP_004785103.1	KEGG: afr:AFE_0337 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14b/L23e
YP_004785104.1	KEGG: afr:AFE_0336 ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17
YP_004785105.1	KEGG: afr:AFE_0335 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29
YP_004785106.1	TIGRFAM: Ribosomal protein L16; HAMAP: Ribosomal protein L16; KEGG: afr:AFE_0334 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16
YP_004785107.1	TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; K Homology, type 2; Ribosomal protein S3, N-terminal; KEGG: afr:AFE_0333 ribosomal protein S3; SMART: K Homology
YP_004785108.1	manually curated; TIGRFAM: Ribosomal protein L22, bacterial-type; KEGG: afr:AFE_0332 50S ribosomal protein L22; PFAM: Ribosomal protein L22/L17
YP_004785109.1	KEGG: afr:AFE_0331 30S ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15
YP_004785110.1	KEGG: afr:AFE_0330 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2
YP_004785111.1	PFAM: Ribosomal protein L25/L23; KEGG: afr:AFE_0329 50S ribosomal protein L23
YP_004785112.1	PFAM: Ribosomal protein L4/L1e; KEGG: afr:AFE_0328 50S ribosomal protein L4
YP_004785113.1	KEGG: afr:AFE_0327 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3
YP_004785114.1	TIGRFAM: Ribosomal protein S10, bacterial; HAMAP: 30S ribosomal protein S10; KEGG: afr:AFE_0326 30S ribosomal protein S10; PFAM: Ribosomal protein S10
YP_004785115.1	KEGG: afr:AFE_0325 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal
YP_004785116.1	KEGG: afr:AFE_0324 elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal
YP_004785117.1	KEGG: afr:AFE_0323 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7
YP_004785118.1	KEGG: afr:AFE_0322 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacterial-type; PFAM: Ribosomal protein S12/S23
YP_004785119.1	SMART: RNA polymerase, N-terminal; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; KEGG: afe:Lferr_0491 DNA-directed RNA polymerase subunit beta'; HAMAP: DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5
YP_004785120.1	TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase subunit beta; KEGG: afr:AFE_0320 DNA-directed RNA polymerase, beta subunit; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7
YP_004785121.1	TIGRFAM: Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; KEGG: afr:AFE_0318 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal
YP_004785122.1	KEGG: afr:AFE_0317 50S ribosomal protein L10; HAMAP: 50S ribosomal protein L10; PFAM: Ribosomal protein L10
YP_004785123.1	KEGG: afr:AFE_0316 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1
YP_004785124.1	TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, C-terminal; Ribosomal protein L11, N-terminal; KEGG: afr:AFE_0315 50S ribosomal protein L11; SMART: Ribosomal protein L11
YP_004785125.1	TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; KEGG: afr:AFE_0314 transcription termination/antitermination factor NusG; SMART: Transcription antitermination protein, NusG, N-terminal; KOW
YP_004785126.1	KEGG: afr:AFE_0313 preprotein translocase, SecE subunit; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein secE/sec61-gamma protein
YP_004785127.1	KEGG: afr:AFE_0325 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal
YP_004785128.1	PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: afr:AFE_0306 OmpA family protein
YP_004785129.1	KEGG: afr:AFE_0305 2-polyprenylphenol 6-hydroxylase; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1
YP_004785130.1	KEGG: afr:AFE_0304 hypothetical protein
YP_004785131.1	KEGG: afr:AFE_0303 hypothetical protein; PFAM: Sel1-like; SMART: Sel1-like
YP_004785132.1	KEGG: afr:AFE_0302 hypothetical protein
YP_004785133.1	TIGRFAM: NusB antitermination factor; HAMAP: N utilization substance protein B-like protein; KEGG: afr:AFE_0301 transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44
YP_004785134.1	TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: afr:AFE_0300 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase
YP_004785135.1	TIGRFAM: DHBP synthase RibB; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: afr:AFE_0299 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; PFAM: DHBP synthase RibB; GTP cyclohydrolase II
YP_004785136.1	KEGG: afr:AFE_0298 riboflavin synthase, alpha subunit; TIGRFAM: Lumazine-binding protein; PFAM: Lumazine-binding protein
YP_004785137.1	TIGRFAM: Riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase, C-terminal; KEGG: afr:AFE_0297 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding
YP_004785138.1	TIGRFAM: Ribonucleotide reductase regulator NrdR-like; HAMAP: Transcriptional repressor nrdR; KEGG: afr:AFE_0296 transcriptional regulator NrdR; PFAM: ATP-cone
YP_004785139.1	PFAM: Serine hydroxymethyltransferase; KEGG: afr:AFE_0295 serine hydroxymethyltransferase
YP_004785140.1	KEGG: afe:Lferr_0470 hypothetical protein
YP_004785141.1	TIGRFAM: Homoserine O-acetyltransferase; HAMAP: Homoserine O-acetyltransferase; KEGG: afr:AFE_0293 homoserine O-acetyltransferase; PFAM: Alpha/beta hydrolase fold-1
YP_004785142.1	KEGG: afr:AFE_0292 methionine biosynthesis protein MetW; TIGRFAM: Methionine biosynthesis MetW; PFAM: Methionine biosynthesis MetW
YP_004785143.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: afr:AFE_0291 glutathione S-transferase family protein
YP_004785144.1	TIGRFAM: UbiE/COQ5 methyltransferase; HAMAP: UbiE/COQ5 methyltransferase; KEGG: afr:AFE_0289 ubiquinone/menaquinone biosynthesis methlytransferase UbiE; PFAM: UbiE/COQ5 methyltransferase
YP_004785145.1	TIGRFAM: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; HAMAP: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; KEGG: afr:AFE_0288 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: Methionine synthase, vitamin-B12 independent; Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal
YP_004785146.1	PFAM: Carbonic anhydrase; KEGG: afr:AFE_0287 carbonic anhydrase
YP_004785147.1	PFAM: Sulphate transporter; KEGG: afr:AFE_0286 sulfate transporter family protein
YP_004785148.1	TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: afr:AFE_0285 50S ribosomal protein L21; PFAM: Ribosomal protein L21
YP_004785149.1	TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: afr:AFE_0284 50S ribosomal protein L27; PFAM: Ribosomal protein L27
YP_004785150.1	TIGRFAM: GTP-binding protein Obg/CgtA; HAMAP: GTPase obg; KEGG: afr:AFE_0283 GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related
YP_004785151.1	SMART: Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: Glutamate 5-kinase, ProB-related; KEGG: afr:AFE_0281 glutamate 5-kinase; HAMAP: Glutamate 5-kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase
YP_004785152.1	PFAM: Ferric-uptake regulator; KEGG: afr:AFE_0282 ferric uptake regulation protein
YP_004785153.1	PFAM: SmpA/OmlA; KEGG: afr:AFE_0279 lipoprotein, SmpA/OmlA family
YP_004785154.1	PFAM: Streptomyces cyclase/dehydrase; KEGG: afr:AFE_0280 hypothetical protein
YP_004785155.1	KEGG: afe:Lferr_0455 phospholipase D/transphosphatidylase
YP_004785156.1	TIGRFAM: SsrA-binding protein; HAMAP: SsrA-binding protein; KEGG: afr:AFE_0277 SsrA-binding protein; PFAM: SsrA-binding protein
YP_004785157.1	PFAM: Glycosyl transferase, family 39; KEGG: afr:AFE_0276 dolichyl-phosphate-mannose-protein mannosyltransferase family protein
YP_004785158.1	PFAM: Disulphide bond formation protein DsbB; KEGG: afr:AFE_0274 disulfide bond formation protein B, putative
YP_004785159.1	KEGG: afr:AFE_0273 phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type
YP_004785160.1	KEGG: afr:AFE_0272 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
YP_004785161.1	TIGRFAM: tRNA (guanine-N-7) methyltransferase; HAMAP: tRNA (guanine-N(7)-)-methyltransferase; KEGG: afe:Lferr_0448 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase
YP_004785162.1	KEGG: afr:AFE_0266 glycosyl transferase, group 2 family protein; TIGRFAM: Glycosyl transferase, family 2, hopene-associated, HpnB; PFAM: Glycosyl transferase, family 2
YP_004785163.1	KEGG: afr:AFE_0265 twitching motility protein PilT; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E
YP_004785164.1	TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: afr:AFE_0264 twitching motility protein PilT; SMART: ATPase, AAA+ type, core
YP_004785165.1	KEGG: afr:AFE_0263 conserved hypothetical protein TIGR00044; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal
YP_004785166.1	KEGG: afr:AFE_0262 pyrroline-5-carboxylate reductase; TIGRFAM: Delta 1-pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent
YP_004785167.1	PFAM: Protein of unknown function YGGT; KEGG: afr:AFE_0261 YGGT family protein
YP_004785168.1	TIGRFAM: Conserved hypothetical protein CHP00251; HAMAP: Protein of unknown function DUF167; KEGG: afr:AFE_0260 conserved hypothetical protein TIGR00251, putative; PFAM: Protein of unknown function DUF167
YP_004785169.1	SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Biotin synthase; KEGG: afr:AFE_0259 biotin synthase; HAMAP: Biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM
YP_004785170.1	PFAM: Lipid A 3-O-deacylase-related; KEGG: afr:AFE_0258 hypothetical protein
YP_004785171.1	PFAM: Secretion protein HlyD; KEGG: afr:AFE_0257 secretion protein, HlyD family
YP_004785172.1	KEGG: afr:AFE_0256 acetylglutamate kinase; TIGRFAM: Acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase
YP_004785173.1	PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: afr:AFE_0255 transcriptional regulator, TetR family
YP_004785174.1	KEGG: afr:AFE_0254 hypothetical protein
YP_004785175.1	KEGG: afe:Lferr_0430 hypothetical protein
YP_004785176.1	KEGG: afr:AFE_0253 hypothetical protein
YP_004785177.1	PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; Ferredoxin; KEGG: afr:AFE_0252 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase, putative
YP_004785178.1	SMART: Exonuclease; TIGRFAM: Ribonuclease T; KEGG: afr:AFE_0251 ribonuclease T; HAMAP: Ribonuclease T; PFAM: Exonuclease, RNase T/DNA polymerase III
YP_004785179.1	KEGG: afr:AFE_0250 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00245; PFAM: Conserved hypothetical protein CHP00245
YP_004785180.1	KEGG: afr:AFE_0249 arginine-tRNA--protein transferase; HAMAP: Arginine-tRNA-protein transferase, predicted, prokaryotic; PFAM: Arginine-tRNA-protein transferase, C-terminal; Arginine-tRNA-protein transferase, N-terminal
YP_004785181.1	TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase; KEGG: afr:AFE_0248 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: Leucyl/phenylalanyl-tRNA-protein transferase
YP_004785182.1	PFAM: Peptidase M48, Ste24p; Peptidase M48B, HtpX peptidase N-terminal; KEGG: afr:AFE_0247 heat shock protein HtpX
YP_004785183.1	KEGG: afr:AFE_0246 dethiobiotin synthetase; TIGRFAM: Dethiobiotin synthase; HAMAP: Dethiobiotin synthase
YP_004785184.1	KEGG: afr:AFE_0245 biotin synthesis protein BioC; TIGRFAM: Biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11
YP_004785185.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: afr:AFE_0244 BioH protein
YP_004785186.1	TIGRFAM: 8-amino-7-oxononanoate synthase; HAMAP: 8-amino-7-oxononanoate synthase; KEGG: afr:AFE_0243 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/II
YP_004785187.1	PFAM: Phosphoribosyltransferase; KEGG: afr:AFE_0242 competence protein
YP_004785188.1	KEGG: afr:AFE_0241 RNA methyltransferase, TrmH family, group 2; TIGRFAM: RNA methyltransferase TrmH, group 2; PFAM: tRNA/rRNA methyltransferase, SpoU
YP_004785189.1	PFAM: Sulphatase-modifying factor; Methyltransferase type 11; KEGG: afr:AFE_0240 hypothetical protein
YP_004785190.1	PFAM: Aminotransferase, class I/II; KEGG: afr:AFE_0239 aminotransferase, class II
YP_004785191.1	PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: afr:AFE_0238 lipid A biosynthesis lauroyl acyltransferase
YP_004785192.1	PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; KEGG: afr:AFE_0237 3-deoxy-D-manno-octulosonic-acid transferase
YP_004785193.1	KEGG: afr:AFE_0236 hypothetical protein
YP_004785194.1	KEGG: afr:AFE_0235 lipopolysaccharide heptosyltransferase 1; TIGRFAM: Lipopolysaccharide heptosyltransferase I; PFAM: Glycosyl transferase, family 9
YP_004785195.1	PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_0234 lipopolysaccharide core biosynthesis glycosyl transferase
YP_004785196.1	KEGG: afr:AFE_0232 O-antigen polymerase family protein
YP_004785197.1	PFAM: Glycosyl transferase, family 9; KEGG: tal:Thal_0153 glycosyl transferase family 9
YP_004785199.1	PFAM: Glycosyl transferase, group 1; KEGG: afe:Lferr_0406 group 1 glycosyl transferase
YP_004785200.1	PFAM: Polysaccharide deacetylase; KEGG: afr:AFE_0229 polysaccharide deacetylase family protein
YP_004785201.1	PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_0228 glycosyl transferase, group 2 family protein
YP_004785202.1	KEGG: afr:AFE_0227 mutator MutT protein/thiamine-phosphate pyrophosphorylase family protein; TIGRFAM: Mutator MutT protein; PFAM: NUDIX hydrolase domain; Thiamine monophosphate synthase
YP_004785203.1	TIGRFAM: Arginine biosynthesis protein ArgJ; HAMAP: Arginine biosynthesis protein ArgJ; KEGG: afr:AFE_0226 arginine biosynthesis bifunctional protein ArgJ; PFAM: Arginine biosynthesis protein ArgJ
YP_004785204.1	TIGRFAM: SecA protein; HAMAP: Protein translocase subunit secA; KEGG: afr:AFE_0225 preprotein translocase, SecA subunit; PFAM: SecA DEAD-like; SecA preprotein cross-linking region; SecA Wing/Scaffold; SEC-C motif
YP_004785205.1	PFAM: Protein of unknown function DUF721; KEGG: afe:Lferr_0400 hypothetical protein
YP_004785206.1	TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; HAMAP: UDP-3-O-acyl N-acetylglucosamine deacetylase; KEGG: afr:AFE_0223 UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase
YP_004785207.1	PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: afr:AFE_0221 stringent starvation protein A
YP_004785208.1	PFAM: AMP-dependent synthetase/ligase; KEGG: afe:Lferr_0397 AMP-dependent synthetase and ligase
YP_004785209.1	PFAM: Polynucleotide adenylyltransferase region; KEGG: afr:AFE_0218 polyA polymerase family protein
YP_004785210.1	KEGG: afr:AFE_0219 hypothetical protein
YP_004785211.1	TIGRFAM: MraZ; HAMAP: MraZ; KEGG: afr:AFE_0215 MraZ protein; PFAM: MraZ domain
YP_004785212.1	TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: afr:AFE_0214 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW
YP_004785213.1	KEGG: afr:AFE_0213 cell division protein FtsL; TIGRFAM: Cell division protein, FtsL -like; PFAM: Cell division protein FtsL
YP_004785214.1	PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: afr:AFE_0212 peptidoglycan synthetase FtsI
YP_004785215.1	TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: afr:AFE_0211 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal
YP_004785216.1	KEGG: afr:AFE_0210 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal
YP_004785217.1	TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; KEGG: afr:AFE_0209 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site
YP_004785218.1	TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; KEGG: afr:AFE_0208 UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal
YP_004785219.1	KEGG: afr:AFE_0207 cell division protein FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein
YP_004785220.1	TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; KEGG: afr:AFE_0206 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyl transferase, family 28; Glycosyl transferase, family 28, C-terminal
YP_004785221.1	TIGRFAM: UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; KEGG: afr:AFE_0205 UDP-N-acetylmuramate--alanine ligase; PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal
YP_004785222.1	TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: afr:AFE_0204 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal
YP_004785223.1	TIGRFAM: D-alanine--D-alanine ligase; HAMAP: D-alanine--D-alanine ligase; KEGG: afr:AFE_0203 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal
YP_004785224.1	PFAM: Cell division protein FtsQ; Polypeptide-transport-associated, FtsQ-type; KEGG: afr:AFE_0202 cell division protein FtsQ
YP_004785225.1	KEGG: afr:AFE_0201 cell division protein FtsA; TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain
YP_004785226.1	KEGG: afr:AFE_0200 cell division protein FtsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain
YP_004785227.1	KEGG: tkm:TK90_0226 leucine-rich repeat-containing protein
YP_004785228.1	KEGG: afr:AFE_0199 hypothetical protein
YP_004785229.1	TIGRFAM: Dehydroquinase, class II; HAMAP: Dehydroquinase, class II; KEGG: afr:AFE_0197 3-dehydroquinate dehydratase; PFAM: Dehydroquinase, class II
YP_004785230.1	KEGG: afr:AFE_0196 acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment
YP_004785231.1	KEGG: afr:AFE_0195 acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal
YP_004785232.1	TIGRFAM: Ribosomal protein L11 methyltransferase; HAMAP: Ribosomal protein L11 methyltransferase; KEGG: afr:AFE_0194 ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase
YP_004785233.1	KEGG: afr:AFE_0193 MJ0042 family finger-like domain protein
YP_004785234.1	PFAM: Helix-turn-helix, Fis-type; KEGG: afr:AFE_0191 transcriptional regulator, Fis family
YP_004785235.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: afr:AFE_0192 transglycosylase, putative
YP_004785236.1	PFAM: Stringent starvation protein B; KEGG: afr:AFE_0190 stringent starvation protein B
YP_004785237.1	PFAM: Polysaccharide deacetylase; KEGG: afr:AFE_0787 polysaccharide deacetylase family protein
YP_004785238.1	PFAM: Monooxygenase, FAD-binding; KEGG: afr:AFE_0788 non-heme halogenase, putative
YP_004785239.1	KEGG: afr:AFE_0789 dioxygenase, putative
YP_004785240.1	KEGG: xac:XAC3351 hypothetical protein
YP_004785241.1	KEGG: afr:AFE_0790 acyltransferase, putative; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase
YP_004785242.1	PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_0792 glycosyl transferase, group 2
YP_004785243.1	PFAM: Cation/H+ exchanger; KEGG: afr:AFE_0791 Na+/H+ antiporter, putative
YP_004785244.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_0793 3-ketoacyl-(acyl-carrier-protein) reductase
YP_004785245.1	KEGG: afr:AFE_0794 hypothetical protein
YP_004785246.1	KEGG: afr:AFE_0795 hypothetical protein
YP_004785247.1	PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal; KEGG: afr:AFE_0796 3-oxoacyl-(acyl carrier protein) synthase I
YP_004785248.1	KEGG: afr:AFE_0797 acyl carrier protein, putative
YP_004785249.1	KEGG: afr:AFE_0798 hypothetical protein
YP_004785250.1	KEGG: afe:Lferr_0942 putative transmembrane protein
YP_004785251.1	PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: afe:Lferr_0943 lipid A biosynthesis acyltransferase
YP_004785252.1	PFAM: AMP-dependent synthetase/ligase; KEGG: afr:AFE_0802 AMP-binding protein
YP_004785253.1	KEGG: afr:AFE_0803 hypothetical protein
YP_004785254.1	KEGG: afr:AFE_0804 hypothetical protein
YP_004785255.1	KEGG: afr:AFE_0189 fructose-1,6-bisphosphatase; HAMAP: Fructose-1,6-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase
YP_004785256.1	PFAM: Protein of unknown function DUF1342; KEGG: afr:AFE_0188 hypothetical protein
YP_004785257.1	KEGG: afr:AFE_0187 dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase
YP_004785258.1	PFAM: Peptidase A24A, N-terminal; Peptidase A24A, prepilin type IV; KEGG: afr:AFE_0186 type IV pilus prepilin peptidase PilD
YP_004785259.1	KEGG: afe:Lferr_0364 two component sigma-54 specific fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core
YP_004785260.1	KEGG: afr:AFE_0184 sensor protein PilS, putative; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region
YP_004785261.1	TIGRFAM: ATPase, type IV, pilus assembly, PilB; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: afr:AFE_0183 type IV pilus assembly protein; SMART: ATPase, AAA+ type, core
YP_004785262.1	TIGRFAM: Quinate/shikimate 5-dehydrogenase; HAMAP: Shikimate dehydrogenase; KEGG: afr:AFE_0182 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase
YP_004785263.1	KEGG: afr:AFE_0181 anhydro-N-acetylmuramic acid kinase; HAMAP: Anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase
YP_004785264.1	PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: afr:AFE_0180 peptidyl-prolyl cis-trans isomerase, FKBP-type
YP_004785265.1	TIGRFAM: Ferrochelatase; HAMAP: Ferrochelatase; KEGG: afr:AFE_0179 ferrochelatase; PFAM: Ferrochelatase
YP_004785266.1	KEGG: afr:AFE_0178 exodeoxyribonuclease III; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; PFAM: Endonuclease/exonuclease/phosphatase
YP_004785267.1	PFAM: Glutathione S-transferase, N-terminal; KEGG: afr:AFE_0177 glutathione S-transferase family protein
YP_004785268.1	PFAM: Protein of unknown function DUF519; KEGG: afr:AFE_0176 hypothetical protein
YP_004785269.1	KEGG: afr:AFE_0175 hypothetical protein
YP_004785270.1	KEGG: afr:AFE_0174 exodeoxyribonuclease III; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; PFAM: Endonuclease/exonuclease/phosphatase
YP_004785271.1	KEGG: afr:AFE_0173 ribosomal protein L3 N-methyltransferase; TIGRFAM: Ribosomal protein L3-specific, glutamine-N5-methyltransferase; Modification methylase HemK; PFAM: Methyltransferase small
YP_004785272.1	PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_0171 drug resistance transporter,putative, EmrB/QacA subfamily
YP_004785273.1	PFAM: Mechanosensitive ion channel MscS; KEGG: sde:Sde_3910 hypothetical protein
YP_004785274.1	TIGRFAM: Arginyl-tRNA synthetase, class Ic; HAMAP: Arginyl-tRNA synthetase, class Ic; KEGG: afr:AFE_0170 arginyl-tRNA synthetase
YP_004785275.1	PFAM: Sporulation/cell division region, bacteria; KEGG: afr:AFE_0168 hypothetical protein
YP_004785276.1	PFAM: Protein of unknown function DUF1790; KEGG: afr:AFE_0169 hypothetical protein
YP_004785277.1	SMART: Ribosomal RNA adenine methylase transferase, N-terminal; TIGRFAM: Ribosomal RNA adenine dimethylase; KEGG: afe:Lferr_0346 dimethyladenosine transferase; HAMAP: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine methylase transferase
YP_004785278.1	KEGG: afr:AFE_0166 HNH endonuclease domain protein; PFAM: HNH endonuclease; SMART: HNH nuclease
YP_004785279.1	TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: afr:AFE_0165 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA
YP_004785280.1	KEGG: afr:AFE_0164 S4 domain protein; PFAM: RNA-binding S4; SMART: RNA-binding S4
YP_004785281.1	KEGG: afr:AFE_0163 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004785282.1	KEGG: afe:Lferr_0341 hypothetical protein
YP_004785283.1	PFAM: Toluene tolerance; KEGG: afr:AFE_0161 toluene tolerance protein, putative
YP_004785284.1	PFAM: Mammalian cell entry related; KEGG: afr:AFE_0160 mce-related protein
YP_004785285.1	KEGG: afr:AFE_0159 toluene tolerance protein Ttg2B, putative; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140
YP_004785286.1	KEGG: afr:AFE_0158 toluene ABC transporter, ATP-binding protein, putative; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004785287.1	TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; HAMAP: S-adenosylmethionine decarboxylase proenzyme; KEGG: afr:AFE_0157 S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal
YP_004785288.1	TIGRFAM: Spermine synthase; HAMAP: Spermidine synthase; KEGG: afr:AFE_0156 spermidine synthase; PFAM: Spermine synthase
YP_004785289.1	PFAM: Phosphoglycerate mutase; KEGG: afr:AFE_0155 phosphoglycerate mutase family protein
YP_004785290.1	KEGG: afr:AFE_2955 sigma-54 dependent DNA-binding response regulator, putative; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core
YP_004785291.1	KEGG: afr:AFE_2956 hypothetical protein
YP_004785292.1	KEGG: afe:Lferr_2570 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain
YP_004785293.1	KEGG: afr:AFE_2959 hypothetical protein; HAMAP: Fe(II) trafficking protein YggX; PFAM: Fe(II) trafficking protein YggX
YP_004785294.1	TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: afr:AFE_3015 A/G-specific adenine glycosylase; SMART: HhH-GPD domain
YP_004785295.1	KEGG: afr:AFE_3017 hypothetical protein
YP_004785296.1	KEGG: afr:AFE_3018 phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile region
YP_004785297.1	KEGG: afr:AFE_3019 phosphocarrier protein HPr; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein
YP_004785298.1	PFAM: Phosphotransferase system, fructose subfamily IIA component; KEGG: afr:AFE_3020 PTS system, IIA component, putative
YP_004785299.1	HAMAP: ATPase, P-loop-containing; KEGG: afr:AFE_3021 ATPase
YP_004785300.1	PFAM: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, C-terminal; KEGG: afr:AFE_3022 HPr(Ser) kinase/phosphatase
YP_004785301.1	PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: afr:AFE_3023 phosphoenolpyruvate-dependent sugar PTS system, EIIA component
YP_004785302.1	KEGG: afr:AFE_3024 ribosomal subunit interface protein; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein
YP_004785303.1	KEGG: afr:AFE_3025 RNA polymerase sigma-54 factor; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54
YP_004785304.1	KEGG: afr:AFE_3026 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004785305.1	KEGG: afr:AFE_3027 hypothetical protein; TIGRFAM: Cell envelope biogenesis YhbN; PFAM: OstA-like protein
YP_004785306.1	PFAM: Protein of unknown function DUF1239; KEGG: afr:AFE_3028 hypothetical protein
YP_004785307.1	TIGRFAM: Phosphatase KdsC; HAD-superfamily hydrolase, subfamily IIIA; KEGG: afr:AFE_3029 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
YP_004785308.1	TIGRFAM: KpsF/GutQ; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core; KEGG: afr:AFE_3030 sugar isomerase, KpsF/GutQ family; SMART: Cystathionine beta-synthase, core
YP_004785309.1	KEGG: afe:Lferr_2639 hypothetical protein
YP_004785310.1	KEGG: afr:AFE_3031 hypothetical protein
YP_004785311.1	PFAM: Nucleotidyl transferase; KEGG: afr:AFE_3032 nucleotidyltransferase family protein
YP_004785312.1	PFAM: Aminoglycoside phosphotransferase; KEGG: afr:AFE_3033 phosphotransferase, putative
YP_004785313.1	PFAM: Organic solvent tolerance protein; OstA-like protein; KEGG: afe:Lferr_2643 organic solvent tolerance protein
YP_004785314.1	KEGG: afe:Lferr_2644 SurA domain; HAMAP: Chaperone surA; PFAM: SurA N-terminal; Peptidyl-prolyl cis-trans isomerase, PpiC-type
YP_004785315.1	PFAM: ABC-2 type transporter; KEGG: afr:AFE_3036 ABC-2 type transporter
YP_004785316.1	PFAM: BolA-like protein; KEGG: afr:AFE_3037 BolA family protein
YP_004785317.1	KEGG: afr:AFE_3038 glutaredoxin-related protein; TIGRFAM: Glutaredoxin-related protein; PFAM: Glutaredoxin
YP_004785318.1	TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: afr:AFE_3039 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core
YP_004785319.1	TIGRFAM: ATP phosphoribosyltransferase, catalytic region; HAMAP: ATP phosphoribosyltransferase; KEGG: afr:AFE_3040 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase, catalytic region
YP_004785320.1	TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; HAMAP: Histidinol dehydrogenase, prokaryotic-type; KEGG: afr:AFE_3041 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type
YP_004785321.1	TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: afr:AFE_3042 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II
YP_004785322.1	KEGG: afr:AFE_3043 imidazoleglycerol-phosphate dehydratase; HAMAP: Imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase
YP_004785323.1	TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; HAMAP: Imidazole glycerol phosphate synthase, subunit H; KEGG: afr:AFE_3044 imidazole glycerol phosphate synthase subunit HisH; PFAM: Glutamine amidotransferase class-I, C-terminal
YP_004785324.1	TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; HAMAP: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; KEGG: afr:AFE_3045 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: Histidine biosynthesis
YP_004785325.1	TIGRFAM: Histidine biosynthesis, HisF; HAMAP: Imidazole glycerol phosphate synthase subunit hisF; KEGG: afr:AFE_3046 imidazole glycerol phosphate synthase subunit HisF; PFAM: Histidine biosynthesis
YP_004785326.1	PFAM: Phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; HAMAP: Histidine biosynthesis bifunctional protein hisIE; KEGG: afr:AFE_3047 phosphoribosyl-AMP pyrophosphatase/phosphoribosyl-ATP cyclohydrolase
YP_004785327.1	TIGRFAM: Twin-arginine translocation protein TatA/E; HAMAP: Twin-arginine translocation protein TatA/E; KEGG: afr:AFE_3048 twin-arginine translocation protein, TatA/E family; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106
YP_004785328.1	KEGG: afr:AFE_3049 twin-arginine translocation protein TatB; TIGRFAM: Twin-arginine translocation protein TatB; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106
YP_004785329.1	KEGG: afr:AFE_3050 sec-independent protein translocase TatC; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase
YP_004785330.1	PFAM: Glycosyl transferase, group 1; KEGG: afr:AFE_1357 glycosyl transferase, group 1
YP_004785331.1	KEGG: afr:AFE_3291 NAD-dependent epimerase/dehydratase family protein
YP_004785332.1	KEGG: afr:AFE_0590 cold-shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein
YP_004785333.1	manually curated
YP_004785334.1	TIGRFAM: Diguanylate cyclase, predicted; PAS; Twin-arginine translocation pathway, signal sequence; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; GAF; PAS fold-4; KEGG: afe:Lferr_2664 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif
YP_004785335.1	KEGG: afr:AFE_1753 potassium uptake protein; HAMAP: Low affinity potassium transport system protein kup; PFAM: K+ potassium transporter
YP_004785336.1	KEGG: afr:AFE_0096 hypothetical protein
YP_004785337.1	KEGG: afr:AFE_2648 hypothetical protein
YP_004785339.1	PFAM: Amidohydrolase 1; KEGG: afr:AFE_3058 dihydroorotase, multifunctional complex type
YP_004785340.1	TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase; KEGG: afr:AFE_3059 aspartate carbamoyltransferase catalytic subunit; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region
YP_004785341.1	PFAM: Phosphoribosyltransferase; KEGG: afr:AFE_3060 PyrR bifunctional protein
YP_004785342.1	SMART: Resolvase, RNase H-like fold; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: afr:AFE_3061 hypothetical protein; HAMAP: Holliday junction resolvase; PFAM: Resolvase, holliday junction-type, YqgF-like
YP_004785343.1	KEGG: afr:AFE_3062 hypothetical protein; HAMAP: Protein of unknown function DUF179; PFAM: Protein of unknown function DUF179
YP_004785344.1	KEGG: afr:AFE_1275 hypothetical protein
YP_004785345.1	KEGG: afr:AFE_1274 hypothetical protein
YP_004785346.1	KEGG: tin:Tint_1902 hypothetical protein
YP_004785347.1	KEGG: app:CAP2UW1_4512 hypothetical protein
YP_004785348.1	KEGG: app:CAP2UW1_4513 AAA ATPase
YP_004785349.1	PFAM: Integrase, catalytic core; KEGG: app:CAP2UW1_4407 integrase catalytic subunit
YP_004785350.1	KEGG: app:CAP2UW1_4515 hypothetical protein
YP_004785351.1	KEGG: afr:AFE_1292 hypothetical protein
YP_004785353.1	KEGG: afr:AFE_1287 hypothetical protein
YP_004785354.1	KEGG: afr:AFE_1325 hypothetical protein
YP_004785355.1	KEGG: afr:AFE_1323 hypothetical protein
YP_004785357.1	KEGG: afr:AFE_1321 hypothetical protein; HAMAP: UPF0145 protein ybjQ; PFAM: Uncharacterised protein family UPF0145
YP_004785358.1	KEGG: afr:AFE_1223 hypothetical protein
YP_004785359.1	KEGG: geo:Geob_2001 transcriptional modulator of MazE/toxin, MazF
YP_004785360.1	PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: lbl:LBL_2676 proteic killer gene system protein, suppressor of inhibitory function of MazF
YP_004785362.1	KEGG: abm:ABSDF1778 hypothetical protein
YP_004785364.1	PFAM: Protein of unknown function DUF29; KEGG: pay:PAU_03739 hypothetical protein
YP_004785367.1	PFAM: PilT protein, N-terminal; KEGG: afr:AFE_2129 virulence-associated protein, putative
YP_004785368.1	KEGG: afr:AFE_2130 virulence-associated protein, putative
YP_004785369.1	PFAM: GCN5-related N-acetyltransferase; KEGG: gpb:HDN1F_22990 GCN5-related N-acetyltransferase
YP_004785370.1	PFAM: Protein of unknown function DUF1778; KEGG: gpb:HDN1F_23000 hypothetical protein
YP_004785371.1	PFAM: TraG-like, N-terminal; KEGG: afr:AFE_1068 pilus assembly protein TraG, putative
YP_004785372.1	PFAM: Type IV conjugative transfer system protein TraH; KEGG: afr:AFE_1067 pilus assembly protein TraH, putative
YP_004785373.1	KEGG: afr:AFE_1066 pilus assembly protein TraF, putative
YP_004785374.1	PFAM: Lytic transglycosylase-like, catalytic; KEGG: afr:AFE_1065 conjugal transfer protein, putative
YP_004785379.1	KEGG: afr:AFE_1255 hypothetical protein
YP_004785380.1	SMART: Metal-dependent phosphohydrolase, HD region; KEGG: afr:AFE_1254 hypothetical protein
YP_004785381.1	PFAM: Transposase, IS4-like; KEGG: npu:Npun_BR216 hypothetical protein
YP_004785382.1	KEGG: dat:HRM2_05840 hypothetical protein
YP_004785384.1	manually curated; KEGG: afr:AFE_1253 hypothetical protein
YP_004785385.1	KEGG: afr:AFE_1023 HNH endonuclease domain protein; PFAM: HNH endonuclease; SMART: HNH nuclease
YP_004785387.1	KEGG: afr:AFE_1251 lipoprotein, putative
YP_004785388.1	KEGG: afr:AFE_2845 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding
YP_004785389.1	KEGG: afr:AFE_1257 hypothetical protein
YP_004785390.1	KEGG: afr:AFE_1258 DNA topoisomerase domain protein; PFAM: DNA topoisomerase, type IA, central; SMART: DNA topoisomerase, type IA, domain 2
YP_004785391.1	KEGG: afr:AFE_1288 hypothetical protein
YP_004785393.1	KEGG: afr:AFE_1297 cobalamin biosynthesis protein, CobS family; PFAM: ATPase associated with various cellular activities, AAA-5; SMART: ATPase, AAA+ type, core
YP_004785398.1	PFAM: Peptidase M50; KEGG: afr:AFE_1024 membrane-associated zinc metalloprotease, putative
YP_004785400.1	KEGG: afr:AFE_1045 hypothetical protein
YP_004785402.1	KEGG: afr:AFE_1283 hypothetical protein
YP_004785403.1	KEGG: bvi:Bcep1808_6806 5'-3' exonuclease; PFAM: 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2
YP_004785404.1	KEGG: afr:AFE_1060 hypothetical protein
YP_004785405.1	PFAM: Fertility inhibition FinO-like
YP_004785406.1	KEGG: afr:AFE_1584 DNA-binding protein HU family protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein
YP_004785407.1	KEGG: afr:AFE_1070 DNA-binding protein, HU family; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein
YP_004785409.1	PFAM: Integrase, catalytic core, phage; KEGG: afr:AFE_1145 tyrosine recombinase, phage integrase family
YP_004785410.1	KEGG: afr:AFE_1146 hypothetical protein
YP_004785411.1	KEGG: afr:AFE_1943 DsbG domain protein
YP_004785413.1	PFAM: UbiA prenyltransferase; KEGG: nde:NIDE3581 putative UbiA family prenyltransferase
YP_004785414.1	PFAM: FAD linked oxidase, N-terminal; KEGG: gpb:HDN1F_16410 oxidoreductase
YP_004785415.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA2567 short chain dehydrogenase
YP_004785416.1	KEGG: hypothetical protein
YP_004785417.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: aav:Aave_0060 NAD-dependent epimerase/dehydratase
YP_004785418.1	PFAM: Amine oxidase; KEGG: meh:M301_1240 amine oxidase
YP_004785419.1	KEGG: hha:Hhal_1553 hypothetical protein
YP_004785422.1	PFAM: NERD; KEGG: afr:AFE_1109 hypothetical protein
YP_004785426.1	KEGG: afr:AFE_1108 hypothetical protein
YP_004785427.1	KEGG: afr:AFE_1107 hypothetical protein
YP_004785428.1	KEGG: afr:AFE_1020 hypothetical protein
YP_004785429.1	KEGG: xfn:XfasM23_2243 hypothetical protein
YP_004785430.1	KEGG: afr:AFE_1104 conserved domain protein, putative
YP_004785431.1	KEGG: afr:AFE_1103 hypothetical protein
YP_004785432.1	KEGG: afr:AFE_1100 hypothetical protein
YP_004785433.1	PFAM: PemK-like protein; KEGG: afr:AFE_1099 ChpA protein
YP_004785434.1	PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: afr:AFE_1098 PemI family protein
YP_004785435.1	KEGG: afr:AFE_1097 conjugal transfer protein TraN, putative
YP_004785436.1	PFAM: TraU; KEGG: afr:AFE_1096 conjugal transfer protein TraU, putative
YP_004785437.1	PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; KEGG: afr:AFE_1095 pilus assembly protein TraW, putative
YP_004785438.1	KEGG: afr:AFE_1094 hypothetical protein
YP_004785439.1	manually curated; KEGG: afr:AFE_1093 hypothetical protein
YP_004785440.1	PFAM: Peptidase S26, conserved region; KEGG: afr:AFE_1091 conjugation signal peptidase TraF, putative
YP_004785441.1	KEGG: afr:AFE_1090 hypothetical protein
YP_004785442.1	TIGRFAM: Type-IV secretion system protein TraC; KEGG: afr:AFE_1089 type-IV secretion system protein TraC
YP_004785443.1	KEGG: afr:AFE_1088 thiol:disulfide interchange protein, DsbA family
YP_004785444.1	PFAM: Type II secretion system protein E; KEGG: afr:AFE_1087 type II/IV secretion system protein
YP_004785445.1	KEGG: afr:AFE_1085 thiol:disulfide interchange domain protein
YP_004785446.1	KEGG: afr:AFE_1084 conjugal transfer protein TraA, putative
YP_004785447.1	KEGG: afr:AFE_1082 conjugal transfer protein TraV, putative; TIGRFAM: Type IV secretion system, TraV; PFAM: Type IV secretion system, TraV
YP_004785448.1	KEGG: afr:AFE_1081 conjugal transfer protein, putative
YP_004785449.1	KEGG: afr:AFE_1080 TraK lipoprotein, putative
YP_004785450.1	TIGRFAM: TraE; KEGG: afr:AFE_1079 type IV conjugative transfer system protein TraE
YP_004785451.1	TIGRFAM: Type IV conjugative transfer system protein TraL; KEGG: afr:AFE_1078 type IV conjugative transfer system protein TraL
YP_004785452.1	KEGG: afr:AFE_1077 hypothetical protein
YP_004785453.1	KEGG: afr:AFE_1023 HNH endonuclease domain protein; PFAM: HNH endonuclease; SMART: HNH nuclease
YP_004785454.1	KEGG: afr:AFE_1076 hypothetical protein
YP_004785455.1	KEGG: afr:AFE_1075 hypothetical protein
YP_004785456.1	KEGG: afr:AFE_1074 hypothetical protein
YP_004785458.1	KEGG: afr:AFE_1249 hypothetical protein
YP_004785459.1	KEGG: afr:AFE_1064 hypothetical protein
YP_004785460.1	PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: adn:Alide_0478 cmp/dcmp deaminase zinc-binding protein
YP_004785462.1	manually curated; KEGG: afr:AFE_1256 hypothetical protein
YP_004785464.1	KEGG: afr:AFE_1021 hypothetical protein
YP_004785465.1	TIGRFAM: DNA topoisomerase I, bacterial-type; PFAM: DNA topoisomerase, type IA, central; Toprim domain; KEGG: afr:AFE_1013 DNA topoisomerase I, putative; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup
YP_004785466.1	KEGG: afr:AFE_1243 hypothetical protein
YP_004785468.1	PFAM: LexA DNA-binding region; KEGG: bvi:Bcep1808_7375 hypothetical protein
YP_004785471.1	KEGG: cko:CKO_01905 hypothetical protein
YP_004785472.1	PFAM: Prophage CP4-57 regulatory; KEGG: pst:PSPTO_3429 DNA-binding protein
YP_004785473.1	PFAM: Integrase, catalytic core, phage; KEGG: ddc:Dd586_3778 integrase family protein
YP_004785474.1	TIGRFAM: Glutathione synthetase, prokaryotic; HAMAP: Glutathione synthetase, prokaryotic; KEGG: afr:AFE_3063 glutathione synthetase; PFAM: Prokaryotic glutathione synthetase, ATP-binding; Prokaryotic glutathione synthetase, N-terminal
YP_004785475.1	KEGG: afr:AFE_3064 glutamate--cysteine ligase; TIGRFAM: Glutamate--cysteine ligase GshA; PFAM: Glutamate--cysteine ligase GshA
YP_004785476.1	KEGG: afr:AFE_3065 citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase type I; PFAM: Citrate synthase-like
YP_004785477.1	TIGRFAM: FeS cluster insertion; HAMAP: Iron--sulfur cluster insertion protein erpA; KEGG: afr:AFE_3067 iron-sulfur cluster assembly accessory protein; PFAM: FeS cluster biogenesis
YP_004785478.1	PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 2-oxoacid dehydrogenase acyltransferase, catalytic domain; E3 binding; Biotin/lipoyl attachment; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: afr:AFE_3068 pyruvate dehydrogenase complex, E2 and E3 components
YP_004785479.1	PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: afr:AFE_3069 pyruvate dehydrogenase, E1 component, pyruvate dehydrogenase beta subunit
YP_004785480.1	KEGG: afr:AFE_3070 pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit; TIGRFAM: Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y; PFAM: Dehydrogenase, E1 component
YP_004785481.1	KEGG: afe:Lferr_1890 hypothetical protein
YP_004785482.1	KEGG: afr:AFE_3072 hypothetical protein
YP_004785483.1	TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: afr:AFE_3073 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation region
YP_004785484.1	PFAM: Ribosomal protein S9; KEGG: afr:AFE_3074 ribosomal protein S9
YP_004785485.1	KEGG: afr:AFE_3075 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13
YP_004785486.1	KEGG: mca:MCA2653 hypothetical protein
YP_004785487.1	KEGG: afr:AFE_3078 hypothetical protein
YP_004785488.1	PFAM: Nitroreductase-like; KEGG: afr:AFE_3079 nitroreductase family protein
YP_004785489.1	KEGG: smt:Smal_1621 hypothetical protein; TIGRFAM: HI0933-like protein; PFAM: HI0933-like protein
YP_004785490.1	SMART: RNA-binding S4; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; KEGG: afr:AFE_3085 tyrosyl-tRNA synthetase; HAMAP: Tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4
YP_004785491.1	KEGG: afr:AFE_3086 plasma-membrane proton-efflux P-type ATPase, putative; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase
YP_004785493.1	TIGRFAM: Aspartate decarboxylase; HAMAP: Aspartate decarboxylase; KEGG: afr:AFE_3089 aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase
YP_004785494.1	PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_3090 hypothetical protein
YP_004785495.1	TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: afr:AFE_3092 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related
YP_004785496.1	PFAM: Ion transport 2; Regulator of K+ conductance, N-terminal; KEGG: afr:AFE_3093 voltage-gated potassium channel
YP_004785497.1	TIGRFAM: DNA polymerase 1; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; KEGG: afr:AFE_3094 DNA polymerase I; SMART: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease
YP_004785498.1	KEGG: afr:AFE_3095 conserved hypothetical protein TIGR00730; TIGRFAM: Conserved hypothetical protein CHP00730; PFAM: Conserved hypothetical protein CHP00730
YP_004785499.1	KEGG: afr:AFE_3096 hypothetical protein
YP_004785500.1	TIGRFAM: Homoserine kinase ThrB; HAMAP: Homoserine kinase; KEGG: afr:AFE_3097 homoserine kinase; PFAM: Aminoglycoside phosphotransferase
YP_004785501.1	KEGG: afr:AFE_3100 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: Competence protein ComEA, helix-hairpin-helix region; PFAM: Helix-hairpin-helix motif
YP_004785502.1	PFAM: DNA helicase, UvrD/REP type; KEGG: afr:AFE_3101 DNA helicase II
YP_004785503.1	KEGG: afr:AFE_3102 curved DNA-binding protein; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal
YP_004785504.1	KEGG: afe:Lferr_2701 MerR family transcriptional regulator
YP_004785505.1	KEGG: afr:AFE_3104 DNA polymerase X family protein; PFAM: PHP, C-terminal; Nucleotidyltransferase; SMART: DNA-directed DNA polymerase, family X; Helix-hairpin-helix DNA-binding motif, class 1; Polymerase/histidinol phosphatase, N-terminal
YP_004785506.1	PFAM: Alpha/beta hydrolase fold-1; KEGG: afr:AFE_2217 hydrolase, alpha/beta hydrolase fold family
YP_004785508.1	PFAM: Negative transcriptional regulator; KEGG: afr:AFE_2006 transcriptional regulator, putative
YP_004785509.1	PFAM: Transglutaminase-like; KEGG: afr:AFE_2007 hypothetical protein
YP_004785510.1	PFAM: Polyketide cyclase/dehydrase; KEGG: afr:AFE_2804 hypothetical protein
YP_004785511.1	PFAM: NADPH-dependent FMN reductase; KEGG: afr:AFE_2803 FMN reductase, NADPH-dependent
YP_004785512.1	PFAM: GCN5-related N-acetyltransferase; KEGG: hna:Hneap_1663 GCN5-related N-acetyltransferase
YP_004785513.1	PFAM: Small multidrug resistance protein; KEGG: afr:AFE_2802 multidrug resistance protein, SMR family
YP_004785514.1	KEGG: mci:Mesci_1735 hypothetical protein; HAMAP: UPF0310 protein; PFAM: Uncharacterised protein family UPF0310
YP_004785515.1	PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: afe:Lferr_1669 hypothetical protein
YP_004785516.1	KEGG: rah:Rahaq_4788 transcriptional regulator
YP_004785518.1	PFAM: Protein of unknown function DUF1778; KEGG: app:CAP2UW1_4576 hypothetical protein
YP_004785519.1	PFAM: GCN5-related N-acetyltransferase; KEGG: cyj:Cyan7822_5076 GCN5-like N-acetyltransferase
YP_004785520.1	KEGG: cch:Cag_1796 ankyrin
YP_004785521.1	KEGG: tbd:Tbd_2652 nitrogen regulatory protein P-II
YP_004785522.1	KEGG: nha:Nham_4323 hypothetical protein; HAMAP: UPF0753 protein; PFAM: Protein of unknown function DUF2309
YP_004785523.1	KEGG: tbd:Tbd_2654 hypothetical protein
YP_004785524.1	PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; KEGG: tbd:Tbd_2655 NADH dehydrogenase
YP_004785525.1	PFAM: Ketose-bisphosphate aldolase, class-II; Stress responsive alpha-beta barrel; KEGG: afe:Lferr_1374 ketose-bisphosphate aldolase class-II
YP_004785526.1	KEGG: afr:AFE_1677 von Willebrand factor type A domain protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A
YP_004785527.1	KEGG: afr:AFE_1678 p30 protein
YP_004785528.1	KEGG: afr:AFE_1679 hypothetical protein
YP_004785529.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: afe:Lferr_1378 cobyrinic acid ac-diamide synthase
YP_004785530.1	KEGG: afr:AFE_1681 hypothetical protein
YP_004785531.1	PFAM: Ferritin/Dps protein; KEGG: afr:AFE_1682 bacterioferritin
YP_004785532.1	PFAM: Microcompartment protein, bacteria; KEGG: afe:Lferr_1381 microcompartments protein
YP_004785533.1	PFAM: Microcompartment protein, bacteria; KEGG: afr:AFE_1684 carboxysome shell peptide
YP_004785534.1	KEGG: afr:AFE_1686 carboxysome peptide B; TIGRFAM: Carboxysome peptide B; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml
YP_004785535.1	KEGG: afr:AFE_1687 carboxysome peptide A; TIGRFAM: Carboxysome peptide A; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml
YP_004785536.1	KEGG: afr:AFE_1688 carboxysome shell carbonic anhydrase; TIGRFAM: Carboxysome shell carbonic anhydrase; PFAM: Carboxysome shell carbonic anhydrase
YP_004785537.1	KEGG: afe:Lferr_1387 carboxysome structural protein CsoS2
YP_004785538.1	PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: afr:AFE_1690 ribulose bisphosphate carboxylase, small subunit
YP_004785539.1	KEGG: afr:AFE_1691 ribulose bisophosphate carboxylase; HAMAP: Ribulose bisphosphate carboxylase large chain; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal
YP_004785540.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_1692 rubisco operon transcriptional regulator
YP_004785541.1	KEGG: afr:AFE_0812 hypothetical protein
YP_004785542.1	KEGG: afr:AFE_2734 hypothetical protein
YP_004785543.1	PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_0813 major facilitator family transporter
YP_004785544.1	PFAM: Chloride channel, voltage gated; KEGG: afr:AFE_0814 voltage-gated chloride channel
YP_004785545.1	PFAM: Chloride channel, voltage gated; KEGG: afe:Lferr_0957 chloride channel core protein
YP_004785546.1	PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afe:Lferr_0958 LysR family transcriptional regulator
YP_004785547.1	PFAM: Major facilitator superfamily MFS-1; KEGG: afe:Lferr_1533 major facilitator superfamily protein
YP_004785548.1	PFAM: Glucose-methanol-choline oxidoreductase, C-terminal; FAD dependent oxidoreductase; KEGG: afe:Lferr_1534 FAD dependent oxidoreductase
YP_004785549.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_2225 glucose 1-dehydrogenase, putative
YP_004785550.1	PFAM: Glucodextranase N; Glycoside hydrolase 15-related; KEGG: afr:AFE_2224 glycosyl hydrolase, family 15
YP_004785551.1	TIGRFAM: Diguanylate cyclase, predicted; Twin-arginine translocation pathway, signal sequence; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: dar:Daro_3990 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted
YP_004785552.1	KEGG: ana:alr7162 hypothetical protein
YP_004785553.1	PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_0922 drug resistance transporter, EmrB/QacA family
YP_004785554.1	PFAM: Uncharacterised conserved protein UCP012641; KEGG: hna:Hneap_2071 protein of unknown function UCP012641
YP_004785555.1	KEGG: afr:AFE_3174 prevent-host-death family protein
YP_004785556.1	KEGG: pna:Pnap_0429 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core
YP_004785557.1	PFAM: Transposase IS3/IS911; KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein
YP_004785558.1	manually curated; KEGG: afe:Lferr_0145 transposase family protein
YP_004785559.1	KEGG: afr:AFE_0876 hypothetical protein
YP_004785560.1	KEGG: pna:Pnap_0429 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core
YP_004785561.1	PFAM: Transposase IS3/IS911; KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein
YP_004785562.1	KEGG: bph:Bphy_5150 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3
YP_004785563.1	TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: ABC transporter-like; Binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_6505 ABC transporter permease/ATP-binding protein; SMART: ATPase, AAA+ type, core
YP_004785564.1	PFAM: Endoribonuclease L-PSP; KEGG: toc:Toce_1804 endoribonuclease L-PSP
YP_004785565.1	PFAM: Acetamidase/Formamidase; KEGG: pla:Plav_0982 acetamidase/formamidase
YP_004785567.1	PFAM: Protein of unknown function DUF81; KEGG: afr:AFE_0764 hypothetical protein
YP_004785568.1	manually curated; PFAM: Transcription regulator, AsnC-type, C-terminal; KEGG: tcx:Tcr_1418 AsnC family transcriptional regulator; SMART: Transcription regulator, AsnC-type
YP_004785570.1	KEGG: tmz:Tmz1t_3166 hypothetical protein
YP_004785571.1	KEGG: ppg:PputGB1_1616 beta-lactamase domain-containing protein
YP_004785572.1	SMART: Protein phosphatase 2C-related; KEGG: bae:BATR1942_05675 phosphorylated protein phosphatase
YP_004785573.1	KEGG: mmb:Mmol_0663 serine/threonine protein kinase; PFAM: Tyrosine-protein kinase, catalytic domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, subgroup, catalytic domain
YP_004785575.1	TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; KEGG: afr:AFE_3200 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS)
YP_004785576.1	TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: afr:AFE_3201 UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Bacterial transferase hexapeptide repeat
YP_004785577.1	TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; HAMAP: ATPase, F1 complex, delta/epsilon subunit; KEGG: afr:AFE_3202 F0F1 ATP synthase subunit epsilon; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; ATPase, F1 complex, delta/epsilon subunit, C-terminal
YP_004785578.1	SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, F1 complex, beta subunit; KEGG: afr:AFE_3203 ATP synthase F1, beta subunit; HAMAP: ATPase, F1 complex, beta subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal
YP_004785579.1	TIGRFAM: ATPase, F1 complex, gamma subunit; HAMAP: ATP synthase gamma chain; KEGG: afr:AFE_3204 F0F1 ATP synthase subunit gamma; PFAM: ATPase, F1 complex, gamma subunit
YP_004785580.1	TIGRFAM: ATPase, F1 complex, alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; KEGG: afr:AFE_3205 F0F1 ATP synthase subunit alpha; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal
YP_004785581.1	TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; HAMAP: ATPase, F1 complex, OSCP/delta subunit; KEGG: afr:AFE_3206 ATP synthase F1, delta subunit; PFAM: ATPase, F1 complex, OSCP/delta subunit
YP_004785582.1	TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATP synthase subunit b; KEGG: afr:AFE_3207 ATP synthase F0, B subunit; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast
YP_004785583.1	TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: afr:AFE_3208 ATP synthase F0, C subunit; PFAM: ATPase, F0/V0 complex, subunit C
YP_004785584.1	TIGRFAM: ATPase, F0 complex, subunit A; HAMAP: ATP synthase subunit a; KEGG: afr:AFE_3209 ATP synthase F0, A subunit; PFAM: ATPase, F0 complex, subunit A
YP_004785585.1	KEGG: afr:AFE_3210 hypothetical protein
YP_004785586.1	TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: afr:AFE_3211 ParB family protein; SMART: ParB-like nuclease
YP_004785587.1	PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: afr:AFE_3212 chromosome partitioning protein ParA
YP_004785588.1	TIGRFAM: rRNA small subunit methyltransferase G; HAMAP: rRNA small subunit methyltransferase G; KEGG: afr:AFE_3213 methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G
YP_004785589.1	TIGRFAM: Glucose-inhibited division protein A; HAMAP: Glucose-inhibited division protein A; KEGG: afr:AFE_3214 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related
YP_004785590.1	KEGG: afr:AFE_3215 lipoprotein, putative
YP_004785591.1	PFAM: Methyltransferase type 12; KEGG: afr:AFE_3216 hypothetical protein
YP_004785592.1	KEGG: afr:AFE_3217 molybdenum cofactor biosynthesis protein B; TIGRFAM: Molybdenum cofactor biosynthesis protein B, proteobacteria; Molybdenum cofactor synthesis; PFAM: Molybdopterin binding
YP_004785593.1	PFAM: Mg2+ transporter protein, CorA-like; KEGG: afr:AFE_3218 magnesium and cobalt transport protein, putative
YP_004785594.1	PFAM: Mg2+ transporter protein, CorA-like; KEGG: afr:AFE_3219 magnesium and cobalt transport protein, putative
YP_004785595.1	KEGG: afr:AFE_3220 hypothetical protein
YP_004785596.1	PFAM: Mg2+ transporter protein, CorA-like; KEGG: afe:Lferr_2825 Mg2 transporter protein CorA family protein
YP_004785597.1	PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: afr:AFE_2216 hypothetical protein
YP_004785598.1	PFAM: Cysteine-rich region, CCG; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: afr:AFE_1663 glycolate oxidase, iron-sulfur subunit
YP_004785599.1	PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; KEGG: afr:AFE_1664 glycolate oxidase FAD binding subunit
YP_004785600.1	PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; KEGG: afe:Lferr_1362 D-lactate dehydrogenase (cytochrome)
YP_004785601.1	PFAM: Protein of unknown function, DUF1537; KEGG: afr:AFE_1666 hypothetical protein
YP_004785602.1	PFAM: Transketolase-like, pyrimidine-binding domain; KEGG: afe:Lferr_1364 transketolase central region
YP_004785603.1	KEGG: afr:AFE_1668 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR, N-terminal; Transcriptional regulator IclR, C-terminal; SMART: Transcriptional regulator IclR, N-terminal
YP_004785604.1	KEGG: gur:Gura_4195 hypothetical protein
YP_004785605.1	PFAM: Protein of unknown function DUF2442; KEGG: afe:Lferr_0674 hypothetical protein
YP_004785606.1	PFAM: Glycosyl transferase, group 1; Glycosyl transferase, family 2; KEGG: dia:Dtpsy_0558 group 1 glycosyl transferase
YP_004785607.1	PFAM: GCN5-related N-acetyltransferase; KEGG: dat:HRM2_25220 putative acetyltransferase (GNAT-family protein)
YP_004785608.1	PFAM: Protein of unknown function DUF1778; KEGG: tau:Tola_0700 hypothetical protein
YP_004785609.1	PFAM: Transposase (putative), IS66 Orf2 like; Transposase, IS66; KEGG: afe:Lferr_1326 transposase IS66
YP_004785611.1	KEGG: gpb:HDN1F_35290 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; HNH endonuclease; SMART: HNH nuclease
YP_004785612.1	KEGG: aca:ACP_0693 glycosyl transferase, group 2 family; manually curated; PFAM: Glycosyl transferase, family 2
YP_004785613.1	KEGG: afr:AFE_1342 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase
YP_004785614.1	KEGG: eha:Ethha_0741 hypothetical protein
YP_004785615.1	PFAM: NAD-dependent epimerase/dehydratase; KEGG: bph:Bphy_2297 NAD-dependent epimerase/dehydratase
YP_004785616.1	PFAM: Rhamnan synthesis F; Glycosyl transferase, group 1; KEGG: nmu:Nmul_A2403 glycosyl transferase, group 1
YP_004785617.1	KEGG: met:M446_6083 hypothetical protein
YP_004785618.1	KEGG: cre:CHLREDRAFT_196838 O-methyltransferase
YP_004785619.1	PFAM: GtrA-like protein; KEGG: brh:RBRH_03111 hypothetical protein
YP_004785620.1	PFAM: Glycosyl transferase, family 2; KEGG: bgf:BC1003_0767 glycosyl transferase family 2
YP_004785621.1	PFAM: Protein of unknown function, membrane YfhO; KEGG: bgf:BC1003_0768 hypothetical protein
YP_004785622.1	PFAM: Glycosyl transferase, family 2; Methyltransferase type 12; KEGG: bph:Bphy_2296 glycosyl transferase family protein
YP_004785623.1	KEGG: pst:PSPTO_0705 O-antigen ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core
YP_004785624.1	PFAM: ABC-2 type transporter; KEGG: pst:PSPTO_0704 O-antigen ABC transporter permease
YP_004785625.1	TIGRFAM: Prevent-host-death protein
YP_004785628.1	PFAM: Protein of unknown function DUF1778; KEGG: bpa:BPP0379 hypothetical protein
YP_004785630.1	PFAM: PemK-like protein; KEGG: xfa:XFa0027 plasmid maintenance protein
YP_004785631.1	KEGG: xfa:XFa0028 hypothetical protein
YP_004785632.1	PFAM: GCN5-related N-acetyltransferase; KEGG: eba:ebA5964 GCN5-related N-acetyltransferase
YP_004785633.1	PFAM: Protein of unknown function DUF1778; KEGG: pna:Pnap_1572 hypothetical protein
YP_004785634.1	KEGG: afr:AFE_0441 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase
YP_004785635.1	KEGG: afr:AFE_0442 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase
YP_004785636.1	KEGG: afr:AFE_3294 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related
YP_004785637.1	KEGG: afr:AFE_3295 glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; PFAM: Nucleotidyl transferase
YP_004785638.1	PFAM: General substrate transporter; KEGG: afr:AFE_3296 major facilitator family transporter
YP_004785639.1	KEGG: afr:AFE_3297 TonB family protein
YP_004785640.1	PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; KEGG: afr:AFE_3298 delta-aminolevulinic acid dehydratase
YP_004785641.1	PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; KEGG: afr:AFE_3299 uroporphyrinogen-III synthase
YP_004785642.1	TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; HAMAP: Porphobilinogen deaminase; KEGG: afr:AFE_3300 porphobilinogen deaminase; PFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase
YP_004785643.1	KEGG: afe:Lferr_2899 putative comEA-like protein
YP_004785644.1	PFAM: Histidine triad (HIT) protein; KEGG: afr:AFE_3302 HIT family protein
YP_004785645.1	TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; HAMAP: Glutamate-1-semialdehyde 2,1-aminomutase; KEGG: afr:AFE_3303 glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III
YP_004785646.1	TIGRFAM: Thiamine monophosphate synthase; HAMAP: Thiamine-phosphate pyrophosphorylase; KEGG: afr:AFE_3304 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase
YP_004785647.1	PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: afr:AFE_3305 phosphomethylpyrimidine kinase, putative
YP_004785648.1	KEGG: afr:AFE_2733 hypothetical protein
YP_004785649.1	KEGG: afe:Lferr_2754 cytochrome c-like protein
YP_004785650.1	KEGG: afr:AFE_2732 iron oxidase
YP_004785651.1	PFAM: Cytochrome c1; KEGG: afr:AFE_2731 ubiquinol--cytochrome c reductase, cytochrome c1 subunit
YP_004785652.1	PFAM: Cytochrome b/b6, N-terminal; Cytochrome b/b6, C-terminal; KEGG: afr:AFE_2730 ubiquinol--cytochrome c reductase, cytochrome b subunit
YP_004785653.1	KEGG: afr:AFE_2729 ubiquinol--cytochrome c reductase, iron-sulfur subunit; TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; Twin-arginine translocation pathway, signal sequence; PFAM: Rieske [2Fe-2S] iron-sulphur domain
YP_004785654.1	PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_2728 oxidoreductase, short-chain dehydrogenase/reductase family
YP_004785655.1	PFAM: Cytochrome c, class I; KEGG: afe:Lferr_2349 cytochrome c class I
YP_004785656.1	PFAM: 2-nitropropane dioxygenase, NPD; KEGG: afe:Lferr_2347 2-nitropropane dioxygenase NPD
YP_004785657.1	PFAM: Sterol-binding; KEGG: afr:AFE_2724 hypothetical protein
YP_004785658.1	PFAM: Peptidase U32; KEGG: afr:AFE_2723 peptidase, U32 family
YP_004785659.1	PFAM: Protein of unknown function DUF116; Biotin/lipoate A/B protein ligase; KEGG: afr:AFE_2721 lipoate-protein ligase A, putative
YP_004785660.1	manually curated; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic-like; KEGG: afr:AFE_2720 anaerobic ribonucleoside-triphosphate reductase, beta subunit; PFAM: Radical SAM
YP_004785661.1	KEGG: afr:AFE_2719 hypothetical protein
YP_004785662.1	KEGG: afr:AFE_2718 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic; PFAM: ATP-cone