-- dump date 20140618_184956 -- class Genbank::CDS -- table cds -- table main -- field 1 id -- field 2 GI -- field 3 GeneID -- field 4 chrom_position -- field 5 chromosome -- field 6 codon_start -- field 7 contig -- field 8 description -- field 9 end_pos -- field 10 gene -- field 11 gene_id -- field 12 name -- field 13 organism -- field 14 product -- field 15 protein_id -- field 16 start_pos -- field 17 strand -- field 18 taxid -- field 19 type -- header -- id GI GeneID chrom_position chromosome codon_start contig description end_pos gene gene_id name organism product protein_id start_pos strand taxid type YP_004782570.1 344198244 11043880 241..1596 1 NC_015942.1 SMART: Chromosomal replication initiator, DnaA C-terminal; ATPase, AAA+ type, core; TIGRFAM: Chromosomal replication control, initiator DnaA; KEGG: afr:AFE_3309 chromosomal replication initiator protein DnaA; HAMAP: Chromosomal replication control, initiator DnaA; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); Chromosomal replication initiator, DnaA C-terminal; chromosomal replication initiator protein dnaA 1596 11043880 Acife_0001 Acidithiobacillus ferrivorans SS3 chromosomal replication initiator protein dnaA YP_004782570.1 241 D 743299 CDS YP_004782571.1 344198245 11041368 1880..2977 1 NC_015942.1 TIGRFAM: DNA polymerase III, beta chain; PFAM: DNA polymerase III, beta chain; KEGG: afr:AFE_0001 DNA polymerase III, beta subunit; SMART: DNA polymerase III, beta chain; DNA polymerase III subunit beta 2977 11041368 Acife_0002 Acidithiobacillus ferrivorans SS3 DNA polymerase III subunit beta YP_004782571.1 1880 D 743299 CDS YP_004782572.1 344198246 11041369 2979..4037 1 NC_015942.1 TIGRFAM: DNA-binding, RecF; HAMAP: DNA replication and repair protein recF; KEGG: afr:AFE_0002 DNA replication and repair protein RecF; PFAM: RecF/RecN/SMC protein, N-terminal; DNA replication and repair protein recF 4037 11041369 Acife_0003 Acidithiobacillus ferrivorans SS3 DNA replication and repair protein recF YP_004782572.1 2979 D 743299 CDS YP_004782573.1 344198247 11043881 4034..6436 1 NC_015942.1 TIGRFAM: DNA gyrase, subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; Toprim domain; DNA topoisomerase, type IIA, subunit B, C-terminal; KEGG: afr:AFE_0003 DNA gyrase, B subunit; SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; DNA gyrase subunit B 6436 11043881 Acife_0004 Acidithiobacillus ferrivorans SS3 DNA gyrase subunit B YP_004782573.1 4034 D 743299 CDS YP_004782574.1 344198248 11043882 complement(6437..7249) 1 NC_015942.1 manually curated; KEGG: afr:AFE_1422 Ser/Thr protein phosphatase family protein; Ser/Thr protein phosphatase family protein 7249 11043882 Acife_0005 Acidithiobacillus ferrivorans SS3 Ser/Thr protein phosphatase family protein YP_004782574.1 6437 R 743299 CDS YP_004782575.1 344198249 11041370 7313..10822 1 NC_015942.1 manually curated; KEGG: afr:AFE_0004 hypothetical protein; hypothetical protein 10822 11041370 Acife_0006 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782575.1 7313 D 743299 CDS YP_004782576.1 344198250 11041371 complement(11136..11387) 1 NC_015942.1 TIGRFAM: Septum formation topological specificity factor MinE; HAMAP: Septum formation topological specificity factor MinE; KEGG: afr:AFE_0011 cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; cell division topological specificity factor 11387 11041371 Acife_0007 Acidithiobacillus ferrivorans SS3 cell division topological specificity factor YP_004782576.1 11136 R 743299 CDS YP_004782577.1 344198251 11041372 complement(11389..12198) 1 NC_015942.1 KEGG: afr:AFE_0012 septum site-determining protein MinD; TIGRFAM: Septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; septum site-determining protein MinD 12198 11041372 Acife_0008 Acidithiobacillus ferrivorans SS3 septum site-determining protein MinD YP_004782577.1 11389 R 743299 CDS YP_004782578.1 344198252 11041373 complement(12217..12948) 1 NC_015942.1 TIGRFAM: Septum formation inhibitor MinC; HAMAP: Septum formation inhibitor MinC; KEGG: afe:Lferr_0014 septum site-determining protein MinC; PFAM: Septum formation inhibitor MinC, C-terminal; Septum formation inhibitor MinC, N-terminal; septum site-determining protein minC 12948 11041373 Acife_0009 Acidithiobacillus ferrivorans SS3 septum site-determining protein minC YP_004782578.1 12217 R 743299 CDS YP_004782579.1 344198253 11043883 complement(12978..13304) 1 NC_015942.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: afr:AFE_0014 ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 13304 11043883 Acife_0010 Acidithiobacillus ferrivorans SS3 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004782579.1 12978 R 743299 CDS YP_004782580.1 344198254 11041374 complement(13301..15886) 1 NC_015942.1 TIGRFAM: DNA topoisomerase I, bacterial-type; PFAM: DNA topoisomerase, type IA, central; Toprim domain; DNA topoisomerase, type IA, zn finger; KEGG: afr:AFE_0015 DNA topoisomerase I; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; DNA topoisomerase I 15886 11041374 Acife_0011 Acidithiobacillus ferrivorans SS3 DNA topoisomerase I YP_004782580.1 13301 R 743299 CDS YP_004782581.1 344198255 11041375 complement(15890..16327) 1 NC_015942.1 KEGG: afr:AFE_0016 smg family protein; HAMAP: Protein smg; PFAM: Protein of unknown function DUF494; protein smg 16327 11041375 Acife_0012 Acidithiobacillus ferrivorans SS3 protein smg YP_004782581.1 15890 R 743299 CDS YP_004782582.1 344198256 11041376 complement(16337..17434) 1 NC_015942.1 KEGG: afr:AFE_0017 DNA processing protein DprA, putative; TIGRFAM: DNA recombination-mediator protein A; PFAM: DNA recombination-mediator protein A; DNA protecting protein DprA 17434 11041376 Acife_0013 Acidithiobacillus ferrivorans SS3 DNA protecting protein DprA YP_004782582.1 16337 R 743299 CDS YP_004782583.1 344198257 11043884 complement(17431..18522) 1 NC_015942.1 KEGG: afr:AFE_0018 LysM domain protein; PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; peptidoglycan-binding lysin domain-containing protein 18522 11043884 Acife_0014 Acidithiobacillus ferrivorans SS3 peptidoglycan-binding lysin domain-containing protein YP_004782583.1 17431 R 743299 CDS YP_004782584.1 344198258 11043885 18584..19108 1 NC_015942.1 TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: afr:AFE_0019 polypeptide deformylase; PFAM: Formylmethionine deformylase; peptide deformylase 19108 11043885 Acife_0015 Acidithiobacillus ferrivorans SS3 peptide deformylase YP_004782584.1 18584 D 743299 CDS YP_004782585.1 344198259 11041377 19101..20042 1 NC_015942.1 TIGRFAM: Methionyl-tRNA formyltransferase; HAMAP: Methionyl-tRNA formyltransferase; KEGG: afr:AFE_0020 methionyl-tRNA formyltransferase; PFAM: Formyl transferase, N-terminal; Formyl transferase, C-terminal; methionyl-tRNA formyltransferase 20042 11041377 Acife_0016 Acidithiobacillus ferrivorans SS3 methionyl-tRNA formyltransferase YP_004782585.1 19101 D 743299 CDS YP_004782586.1 344198260 11041378 20039..21337 1 NC_015942.1 KEGG: afr:AFE_0021 sun protein; TIGRFAM: Fmu, rRNA SAM-dependent methyltransferase; PFAM: Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p; NusB/RsmB/TIM44; sun protein 21337 11041378 Acife_0017 Acidithiobacillus ferrivorans SS3 sun protein YP_004782586.1 20039 D 743299 CDS YP_004782587.1 344198261 11041379 21334..21732 1 NC_015942.1 KEGG: afr:AFE_0022 hypothetical protein; hypothetical protein 21732 11041379 Acife_0018 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782587.1 21334 D 743299 CDS YP_004782588.1 344198262 11041380 21702..23915 1 NC_015942.1 KEGG: afe:Lferr_0024 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; integral membrane sensor signal transduction histidine kinase 23915 11041380 Acife_0019 Acidithiobacillus ferrivorans SS3 integral membrane sensor signal transduction histidine kinase YP_004782588.1 21702 D 743299 CDS YP_004782589.1 344198263 11041381 23937..25337 1 NC_015942.1 KEGG: afr:AFE_0024 nitrogen assimilation regulatory protein NtrX, putative; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; two component sigma-54 specific Fis family transcriptional regulator 25337 11041381 Acife_0020 Acidithiobacillus ferrivorans SS3 two component sigma-54 specific Fis family transcriptional regulator YP_004782589.1 23937 D 743299 CDS YP_004782590.1 344198264 11041382 25550..26893 1 NC_015942.1 KEGG: afe:Lferr_0031 hypothetical protein; hypothetical protein 26893 11041382 Acife_0021 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782590.1 25550 D 743299 CDS YP_004782591.1 344198265 11043886 27052..28695 1 NC_015942.1 KEGG: ppd:Ppro_1391 methyl-accepting chemotaxis sensory transducer; PFAM: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; SMART: Chemotaxis methyl-accepting receptor, signalling; HAMP linker domain; methyl-accepting chemotaxis sensory transducer 28695 11043886 Acife_0022 Acidithiobacillus ferrivorans SS3 methyl-accepting chemotaxis sensory transducer YP_004782591.1 27052 D 743299 CDS YP_004782592.1 344198266 11043887 28695..28820 1 NC_015942.1 hypothetical protein 28820 11043887 Acife_0023 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782592.1 28695 D 743299 CDS YP_004782593.1 344198267 11041383 complement(28946..37516) 1 NC_015942.1 PFAM: Glycosyltransferase 36; Putative carbohydrate binding; Glycosyltransferase 36 associated; KEGG: nit:NAL212_0278 hypothetical protein; glycosyl transferase family protein 37516 11041383 Acife_0024 Acidithiobacillus ferrivorans SS3 glycosyl transferase family protein YP_004782593.1 28946 R 743299 CDS YP_004782594.1 344198268 11041384 complement(37711..37839) 1 NC_015942.1 hypothetical protein 37839 11041384 Acife_0025 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782594.1 37711 R 743299 CDS YP_004782595.1 344198269 11041385 complement(37905..38234) 1 NC_015942.1 hypothetical protein 38234 11041385 Acife_0026 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782595.1 37905 R 743299 CDS YP_004782596.1 344198270 11041386 38467..42900 1 NC_015942.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; GAF; KEGG: afe:Lferr_2664 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; GAF; PAC motif; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 42900 11041386 Acife_0027 Acidithiobacillus ferrivorans SS3 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_004782596.1 38467 D 743299 CDS YP_004782597.1 344198271 11041387 complement(42966..43334) 1 NC_015942.1 KEGG: tmz:Tmz1t_2038 arsenate reductase and related; TIGRFAM: Conserved hypothetical protein, ArsC related; PFAM: Arsenate reductase-like; ArsC family protein 43334 11041387 Acife_0028 Acidithiobacillus ferrivorans SS3 ArsC family protein YP_004782597.1 42966 R 743299 CDS YP_004782598.1 344198272 11041388 complement(43331..44458) 1 NC_015942.1 PFAM: Protein of unknown function DUF185; KEGG: afr:AFE_0130 hypothetical protein; hypothetical protein 44458 11041388 Acife_0029 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782598.1 43331 R 743299 CDS YP_004782599.1 344198273 11041389 44468..45208 1 NC_015942.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_0129 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 45208 11041389 Acife_0030 Acidithiobacillus ferrivorans SS3 short-chain dehydrogenase/reductase SDR YP_004782599.1 44468 D 743299 CDS YP_004782600.1 344198274 11041390 45208..45597 1 NC_015942.1 PFAM: NIF system FeS cluster assembly, NifU, C-terminal; KEGG: afr:AFE_0128 NifU domain protein; nitrogen-fixing NifU domain-containing protein 45597 11041390 Acife_0031 Acidithiobacillus ferrivorans SS3 nitrogen-fixing NifU domain-containing protein YP_004782600.1 45208 D 743299 CDS YP_004782601.1 344198275 11041391 45594..46934 1 NC_015942.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Ribosomal protein S12 methylthiotransferase RimO; Methylthiotransferase; KEGG: afr:AFE_0127 ribosomal protein S12 methylthiotransferase; HAMAP: Ribosomal protein S12 methylthiotransferase RimO; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; 30S ribosomal protein S12 methylthiotransferase rimO 46934 11041391 Acife_0032 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S12 methylthiotransferase rimO YP_004782601.1 45594 D 743299 CDS YP_004782602.1 344198276 11043888 complement(46952..47311) 1 NC_015942.1 KEGG: afr:AFE_0126 dihydroneopterin aldolase; TIGRFAM: Dihydroneopterin aldolase; Dihydroneopterin aldolase subgroup; PFAM: Dihydroneopterin aldolase; dihydroneopterin aldolase 47311 11043888 Acife_0033 Acidithiobacillus ferrivorans SS3 dihydroneopterin aldolase YP_004782602.1 46952 R 743299 CDS YP_004782603.1 344198277 11041392 47384..47980 1 NC_015942.1 TIGRFAM: Membrane protein YgiH; HAMAP: Protein of unknown function DUF205; KEGG: afr:AFE_0125 hypothetical protein; PFAM: Protein of unknown function DUF205; glycerol-3-phosphate acyltransferase 47980 11041392 Acife_0034 Acidithiobacillus ferrivorans SS3 glycerol-3-phosphate acyltransferase YP_004782603.1 47384 D 743299 CDS YP_004782604.1 344198278 11041393 complement(48009..49022) 1 NC_015942.1 TIGRFAM: putative glycoprotease GCP; Peptidase M22, glycoprotease, subgroup; HAMAP: O-sialoglycoprotein endopeptidase; KEGG: afr:AFE_0123 O-sialoglycoprotein endopeptidase; PFAM: Peptidase M22, glycoprotease; O-sialoglycoprotein endopeptidase 49022 11041393 Acife_0035 Acidithiobacillus ferrivorans SS3 O-sialoglycoprotein endopeptidase YP_004782604.1 48009 R 743299 CDS YP_004782605.1 344198279 11041394 complement(49019..49846) 1 NC_015942.1 PFAM: Protein of unknown function DUF455; KEGG: cti:RALTA_A1173 hypothetical protein; hypothetical protein 49846 11041394 Acife_0036 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782605.1 49019 R 743299 CDS YP_004782606.1 344198280 11041395 complement(49965..51476) 1 NC_015942.1 PFAM: Pyrrolo-quinoline quinone repeat; KEGG: afr:AFE_0029 tetrathionate hydrolase; pyrrolo-quinoline quinone repeat-containing protein 51476 11041395 Acife_0037 Acidithiobacillus ferrivorans SS3 pyrrolo-quinoline quinone repeat-containing protein YP_004782606.1 49965 R 743299 CDS YP_004782607.1 344198281 11043889 51819..52070 1 NC_015942.1 TIGRFAM: Prevent-host-death protein; KEGG: nde:NIDE2383 addiction module antitoxin YefM; prevent-host-death family protein 52070 11043889 Acife_0038 Acidithiobacillus ferrivorans SS3 prevent-host-death family protein YP_004782607.1 51819 D 743299 CDS YP_004782608.1 344198282 11043890 52067..52321 1 NC_015942.1 KEGG: nde:NIDE2382 addiction module toxin YoeB; TIGRFAM: Addiction module toxin, Txe/YoeB; PFAM: Addiction module toxin, Txe/YoeB; Txe/YoeB family addiction module toxin 52321 11043890 Acife_0039 Acidithiobacillus ferrivorans SS3 Txe/YoeB family addiction module toxin YP_004782608.1 52067 D 743299 CDS YP_004782609.1 344198283 11041396 52686..52931 1 NC_015942.1 KEGG: eba:ebB112 hypothetical protein; hypothetical protein 52931 11041396 Acife_0040 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782609.1 52686 D 743299 CDS YP_004782610.1 344198284 11041397 52928..53323 1 NC_015942.1 KEGG: neu:NE1589 hypothetical protein; hypothetical protein 53323 11041397 Acife_0041 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782610.1 52928 D 743299 CDS YP_004782611.1 344198285 11041399 complement(53782..54060) 1 NC_015942.1 KEGG: tin:Tint_0628 hypothetical protein; hypothetical protein 54060 11041399 Acife_0043 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782611.1 53782 R 743299 CDS YP_004782612.1 344198286 11043891 complement(54032..54322) 1 NC_015942.1 PFAM: Protein of unknown function DUF497; KEGG: tin:Tint_0627 protein of unknown function DUF497; hypothetical protein 54322 11043891 Acife_0044 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782612.1 54032 R 743299 CDS YP_004782613.1 344198287 11041400 complement(55206..55649) 1 NC_015942.1 hypothetical protein 55649 11041400 Acife_0046 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782613.1 55206 R 743299 CDS YP_004782614.1 344198288 11041402 complement(56164..56619) 1 NC_015942.1 hypothetical protein 56619 11041402 Acife_0048 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782614.1 56164 R 743299 CDS YP_004782615.1 344198289 11041403 complement(56710..57138) 1 NC_015942.1 PFAM: NUDIX hydrolase domain; KEGG: azo:azo3712 hypothetical protein; NUDIX hydrolase 57138 11041403 Acife_0049 Acidithiobacillus ferrivorans SS3 NUDIX hydrolase YP_004782615.1 56710 R 743299 CDS YP_004782616.1 344198290 11041404 complement(57517..60603) 1 NC_015942.1 PFAM: Acriflavin resistance protein; KEGG: afe:Lferr_0111 acriflavin resistance protein; acriflavin resistance protein 60603 11041404 Acife_0050 Acidithiobacillus ferrivorans SS3 acriflavin resistance protein YP_004782616.1 57517 R 743299 CDS YP_004782617.1 344198291 11041405 complement(60612..61697) 1 NC_015942.1 KEGG: afr:AFE_0109 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 61697 11041405 Acife_0051 Acidithiobacillus ferrivorans SS3 RND family efflux transporter MFP subunit YP_004782617.1 60612 R 743299 CDS YP_004782618.1 344198292 11041406 complement(61694..63250) 1 NC_015942.1 KEGG: afr:AFE_0108 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 63250 11041406 Acife_0052 Acidithiobacillus ferrivorans SS3 NodT family RND efflux system outer membrane lipoprotein YP_004782618.1 61694 R 743299 CDS YP_004782619.1 344198293 11043893 63440..64186 1 NC_015942.1 KEGG: afr:AFE_0107 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; two component winged helix family transcriptional regulator 64186 11043893 Acife_0053 Acidithiobacillus ferrivorans SS3 two component winged helix family transcriptional regulator YP_004782619.1 63440 D 743299 CDS YP_004782620.1 344198294 11041407 64186..65463 1 NC_015942.1 KEGG: afr:AFE_0106 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; integral membrane sensor signal transduction histidine kinase 65463 11041407 Acife_0054 Acidithiobacillus ferrivorans SS3 integral membrane sensor signal transduction histidine kinase YP_004782620.1 64186 D 743299 CDS YP_004782621.1 344198295 11041408 65569..66834 1 NC_015942.1 KEGG: afr:AFE_0105 metal ion transporter, NRAMP family; NRAMP family metal ion transporter 66834 11041408 Acife_0055 Acidithiobacillus ferrivorans SS3 NRAMP family metal ion transporter YP_004782621.1 65569 D 743299 CDS YP_004782622.1 344198296 11041409 66938..67648 1 NC_015942.1 PFAM: PspA/IM30; KEGG: afr:AFE_2017 PspA/IM30 family; phage shock protein PspA 67648 11041409 Acife_0056 Acidithiobacillus ferrivorans SS3 phage shock protein PspA YP_004782622.1 66938 D 743299 CDS YP_004782623.1 344198297 11041410 67650..67994 1 NC_015942.1 KEGG: afr:AFE_2788 hypothetical protein; HAMAP: UPF0145 protein ybjQ; PFAM: Uncharacterised protein family UPF0145; hypothetical protein 67994 11041410 Acife_0057 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782623.1 67650 D 743299 CDS YP_004782624.1 344198298 11043894 67997..68560 1 NC_015942.1 KEGG: afr:AFE_0467 hypothetical protein; hypothetical protein 68560 11043894 Acife_0058 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782624.1 67997 D 743299 CDS YP_004782625.1 344198299 11043895 complement(68533..68775) 1 NC_015942.1 KEGG: afr:AFE_0104 hypothetical protein; hypothetical protein 68775 11043895 Acife_0059 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782625.1 68533 R 743299 CDS YP_004782626.1 344198300 11041411 69276..69764 1 NC_015942.1 PFAM: Protein of unknown function DUF2495; KEGG: afr:AFE_3115 hypothetical protein; hypothetical protein 69764 11041411 Acife_0060 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782626.1 69276 D 743299 CDS YP_004782627.1 344198301 11041412 complement(69945..71300) 1 NC_015942.1 KEGG: afr:AFE_0137 hypothetical protein; hypothetical protein 71300 11041412 Acife_0061 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782627.1 69945 R 743299 CDS YP_004782628.1 344198302 11041413 complement(71356..72114) 1 NC_015942.1 KEGG: nwi:Nwi_0671 ABC-type nitrate/sulfonate/bicarbonate transport system ATPase component; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 72114 11041413 Acife_0062 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004782628.1 71356 R 743299 CDS YP_004782629.1 344198303 11041414 complement(72144..73028) 1 NC_015942.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: nwi:Nwi_0673 binding-protein dependent transport system inner membrane protein; ABC transporter permease 73028 11041414 Acife_0063 Acidithiobacillus ferrivorans SS3 ABC transporter permease YP_004782629.1 72144 R 743299 CDS YP_004782630.1 344198304 11043896 complement(73131..74477) 1 NC_015942.1 KEGG: nwi:Nwi_0674 ABC transporter sulfonate/nitrate transport system substrate-binding protein; ABC transporter sulfonate/nitrate transport system substrate-binding protein 74477 11043896 Acife_0064 Acidithiobacillus ferrivorans SS3 ABC transporter sulfonate/nitrate transport system substrate-binding protein YP_004782630.1 73131 R 743299 CDS YP_004782631.1 344198305 11043897 complement(74837..75124) 1 NC_015942.1 manually curated; KEGG: afe:Lferr_0430 hypothetical protein; hypothetical protein 75124 11043897 Acife_0065 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782631.1 74837 R 743299 CDS YP_004782632.1 344198306 11041415 complement(75141..78632) 1 NC_015942.1 KEGG: afr:AFE_0004 hypothetical protein; hypothetical protein 78632 11041415 Acife_0066 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782632.1 75141 R 743299 CDS YP_004782633.1 344198307 11041416 complement(78656..78985) 1 NC_015942.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: hha:Hhal_1658 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 78985 11041416 Acife_0067 Acidithiobacillus ferrivorans SS3 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004782633.1 78656 R 743299 CDS YP_004782634.1 344198308 11041417 complement(78997..79926) 1 NC_015942.1 PFAM: PBS lyase HEAT-like repeat; HEAT; KEGG: bch:Bcen2424_1977 heat domain-containing protein; PBS lyase HEAT domain-containing protein repeat-containing protein 79926 11041417 Acife_0068 Acidithiobacillus ferrivorans SS3 PBS lyase HEAT domain-containing protein repeat-containing protein YP_004782634.1 78997 R 743299 CDS YP_004782635.1 344198309 11041418 complement(79954..80187) 1 NC_015942.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: vpe:Varpa_2478 ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 80187 11041418 Acife_0069 Acidithiobacillus ferrivorans SS3 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004782635.1 79954 R 743299 CDS YP_004782636.1 344198310 11041419 complement(80209..81939) 1 NC_015942.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; KEGG: vpe:Varpa_2479 fumarate reductase/succinate dehydrogenase flavoprotein domain protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 81939 11041419 Acife_0070 Acidithiobacillus ferrivorans SS3 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_004782636.1 80209 R 743299 CDS YP_004782637.1 344198311 11041420 complement(81940..82698) 1 NC_015942.1 KEGG: cti:RALTA_B2018 transcriptional regulator GntR family; PFAM: UbiC transcription regulator-associated; HTH transcriptional regulator, GntR; SMART: HTH transcriptional regulator, GntR; GntR family transcriptional regulator 82698 11041420 Acife_0071 Acidithiobacillus ferrivorans SS3 GntR family transcriptional regulator YP_004782637.1 81940 R 743299 CDS YP_004782638.1 344198312 11043898 complement(83364..84755) 1 NC_015942.1 TIGRFAM: Oxygen-independent coproporphyrinogen III oxidase HemN; PFAM: HemN, C-terminal; Radical SAM; KEGG: afr:AFE_0134 oxygen-independent coproporphyrinogen III oxidase; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 84755 11043898 Acife_0072 Acidithiobacillus ferrivorans SS3 oxygen-independent coproporphyrinogen III oxidase YP_004782638.1 83364 R 743299 CDS YP_004782639.1 344198313 11041422 complement(84793..85725) 1 NC_015942.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_0135 transcriptional regulator, LysR family; LysR family transcriptional regulator 85725 11041422 Acife_0073 Acidithiobacillus ferrivorans SS3 LysR family transcriptional regulator YP_004782639.1 84793 R 743299 CDS YP_004782640.1 344198314 11041423 85816..87318 1 NC_015942.1 PFAM: Outer membrane porin, bacterial; KEGG: afr:AFE_0137 hypothetical protein; outer membrane porin 87318 11041423 Acife_0074 Acidithiobacillus ferrivorans SS3 outer membrane porin YP_004782640.1 85816 D 743299 CDS YP_004782641.1 344198315 11041424 complement(87446..88576) 1 NC_015942.1 KEGG: afe:Lferr_0311 lipopolysaccharide heptosyltransferase II; TIGRFAM: Lipopolysaccharide heptosyltransferase II; PFAM: Glycosyl transferase, family 9; lipopolysaccharide heptosyltransferase II 88576 11041424 Acife_0075 Acidithiobacillus ferrivorans SS3 lipopolysaccharide heptosyltransferase II YP_004782641.1 87446 R 743299 CDS YP_004782642.1 344198316 11041425 complement(88578..89342) 1 NC_015942.1 PFAM: Protein of unknown function DUF155; KEGG: afr:AFE_0139 hypothetical protein; hypothetical protein 89342 11041425 Acife_0076 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782642.1 88578 R 743299 CDS YP_004782643.1 344198317 11043899 complement(89346..90731) 1 NC_015942.1 PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; KEGG: afr:AFE_0140 oxidase, FAD-binding; FAD linked oxidase domain-containing protein 90731 11043899 Acife_0077 Acidithiobacillus ferrivorans SS3 FAD linked oxidase domain-containing protein YP_004782643.1 89346 R 743299 CDS YP_004782644.1 344198318 11043900 complement(90728..91804) 1 NC_015942.1 TIGRFAM: RfaE bifunctional protein, domain II; Cytidyltransferase-related; HAMAP: Phosphoheptose isomerase; KEGG: afr:AFE_0141 phosphoheptose isomerase/cytidylyltransferase; PFAM: Cytidylyltransferase; Sugar isomerase (SIS); phosphoheptose isomerase 91804 11043900 Acife_0078 Acidithiobacillus ferrivorans SS3 phosphoheptose isomerase YP_004782644.1 90728 R 743299 CDS YP_004782645.1 344198319 11041426 complement(91801..92166) 1 NC_015942.1 TIGRFAM: Uncharacterised protein family UPF0102; HAMAP: Uncharacterised protein family UPF0102; KEGG: afr:AFE_0142 conserved hypothetical protein TIGR00252; PFAM: Uncharacterised protein family UPF0102; hypothetical protein 92166 11041426 Acife_0079 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782645.1 91801 R 743299 CDS YP_004782646.1 344198320 11041427 complement(92170..94014) 1 NC_015942.1 KEGG: afr:AFE_0143 lipoprotein, putative; lipoprotein 94014 11041427 Acife_0080 Acidithiobacillus ferrivorans SS3 lipoprotein YP_004782646.1 92170 R 743299 CDS YP_004782647.1 344198321 11041428 94084..94959 1 NC_015942.1 TIGRFAM: Uncharacterised protein family UPF0011; HAMAP: Ribosomal RNA small subunit methyltransferase I; KEGG: afr:AFE_0144 tetrapyrrole methylase family protein; PFAM: Tetrapyrrole methylase; ribosomal RNA small subunit methyltransferase I 94959 11041428 Acife_0081 Acidithiobacillus ferrivorans SS3 ribosomal RNA small subunit methyltransferase I YP_004782647.1 94084 D 743299 CDS YP_004782648.1 344198322 11041429 95557..96690 1 NC_015942.1 PFAM: Di-haem cytochrome c peroxidase; KEGG: acr:Acry_2827 cytochrome-c peroxidase; di-heme cytochrome c peroxidase 96690 11041429 Acife_0082 Acidithiobacillus ferrivorans SS3 di-heme cytochrome c peroxidase YP_004782648.1 95557 D 743299 CDS YP_004782649.1 344198323 11041430 96794..98644 1 NC_015942.1 PFAM: ResB-like; KEGG: afr:AFE_3112 cytochrome c-type biogenesis protein ResB; ResB family protein 98644 11041430 Acife_0083 Acidithiobacillus ferrivorans SS3 ResB family protein YP_004782649.1 96794 D 743299 CDS YP_004782650.1 344198324 11041431 98637..99824 1 NC_015942.1 KEGG: afe:Lferr_2711 cytochrome c-type biogenesis protein CcsB; TIGRFAM: Cytochrome c-type biogenesis protein CcsA; PFAM: Cytochrome c assembly protein; cytochrome c-type biogenesis protein CcsB 99824 11041431 Acife_0084 Acidithiobacillus ferrivorans SS3 cytochrome c-type biogenesis protein CcsB YP_004782650.1 98637 D 743299 CDS YP_004782651.1 344198325 11041432 100110..100313 1 NC_015942.1 KEGG: afr:AFE_0590 cold-shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 100313 11041432 Acife_0085 Acidithiobacillus ferrivorans SS3 cold-shock DNA-binding domain-containing protein YP_004782651.1 100110 D 743299 CDS YP_004782652.1 344198326 11041433 complement(100426..100701) 1 NC_015942.1 hypothetical protein 100701 11041433 Acife_0086 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782652.1 100426 R 743299 CDS YP_004782653.1 344198327 11041434 101077..105009 1 NC_015942.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; PAS fold-4; KEGG: afe:Lferr_2664 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate cyclase, predicted; GAF; Diguanylate phosphodiesterase, predicted; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 105009 11041434 Acife_0087 Acidithiobacillus ferrivorans SS3 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_004782653.1 101077 D 743299 CDS YP_004782654.1 344198328 11043902 complement(105068..106558) 1 NC_015942.1 KEGG: afr:AFE_2954 ribonuclease, Rne/Rng family; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain; Rne/Rng family ribonuclease 106558 11043902 Acife_0088 Acidithiobacillus ferrivorans SS3 Rne/Rng family ribonuclease YP_004782654.1 105068 R 743299 CDS YP_004782655.1 344198329 11041435 complement(106555..107142) 1 NC_015942.1 TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: afr:AFE_2953 maf protein; PFAM: Maf-like protein; septum formation protein Maf 107142 11041435 Acife_0089 Acidithiobacillus ferrivorans SS3 septum formation protein Maf YP_004782655.1 106555 R 743299 CDS YP_004782656.1 344198330 11041436 complement(107139..108044) 1 NC_015942.1 KEGG: afe:Lferr_2565 hypothetical protein; hypothetical protein 108044 11041436 Acife_0090 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782656.1 107139 R 743299 CDS YP_004782657.1 344198331 11043903 complement(108041..108475) 1 NC_015942.1 KEGG: afe:Lferr_2564 hypothetical protein; hypothetical protein 108475 11043903 Acife_0091 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782657.1 108041 R 743299 CDS YP_004782658.1 344198332 11041437 complement(108483..108956) 1 NC_015942.1 KEGG: afr:AFE_2950 rRNA large subunit methyltransferase; HAMAP: Ribosomal RNA large subunit methyltransferase H; PFAM: SPOUT methyltransferase, predicted; ribosomal RNA large subunit methyltransferase H 108956 11041437 Acife_0092 Acidithiobacillus ferrivorans SS3 ribosomal RNA large subunit methyltransferase H YP_004782658.1 108483 R 743299 CDS YP_004782659.1 344198333 11041438 complement(108963..109319) 1 NC_015942.1 KEGG: afr:AFE_2949 iojap-related protein; TIGRFAM: Iojap-related protein; PFAM: Iojap-related protein; iojap-like protein 109319 11041438 Acife_0093 Acidithiobacillus ferrivorans SS3 iojap-like protein YP_004782659.1 108963 R 743299 CDS YP_004782660.1 344198334 11043904 complement(109343..109999) 1 NC_015942.1 TIGRFAM: Probable nicotinate-nucleotide adenylyltransferase; Cytidyltransferase-related; HAMAP: nicotinate-nucleotide adenylyltransferase; KEGG: afr:AFE_2948 nicotinate (nicotinamide) nucleotide adenylyltransferase; PFAM: Cytidylyltransferase; nicotinate-nucleotide adenylyltransferase 109999 11043904 Acife_0094 Acidithiobacillus ferrivorans SS3 nicotinate-nucleotide adenylyltransferase YP_004782660.1 109343 R 743299 CDS YP_004782661.1 344198335 11041439 complement(110071..110985) 1 NC_015942.1 KEGG: afr:AFE_2947 thiol:disulfide interchange protein DsbG, putative; thiol:disulfide interchange protein DsbG 110985 11041439 Acife_0095 Acidithiobacillus ferrivorans SS3 thiol:disulfide interchange protein DsbG YP_004782661.1 110071 R 743299 CDS YP_004782662.1 344198336 11041440 111159..111746 1 NC_015942.1 TIGRFAM: Peptide methionine sulphoxide reductase MsrA; HAMAP: Peptide methionine sulphoxide reductase MsrA; KEGG: afr:AFE_2946 peptide-methionine (S)-S-oxide reductase; PFAM: Peptide methionine sulphoxide reductase MsrA; peptide methionine sulfoxide reductase msrA 111746 11041440 Acife_0096 Acidithiobacillus ferrivorans SS3 peptide methionine sulfoxide reductase msrA YP_004782662.1 111159 D 743299 CDS YP_004782663.1 344198337 11043905 111761..112186 1 NC_015942.1 TIGRFAM: Methionine sulphoxide reductase B; HAMAP: Peptide methionine sulfoxide reductase msrB; KEGG: afr:AFE_2945 methionine-R-sulfoxide reductase; PFAM: Methionine sulphoxide reductase B; peptide methionine sulfoxide reductase msrB 112186 11043905 Acife_0097 Acidithiobacillus ferrivorans SS3 peptide methionine sulfoxide reductase msrB YP_004782663.1 111761 D 743299 CDS YP_004782664.1 344198338 11043906 112490..113107 1 NC_015942.1 KEGG: afr:AFE_0961 hypothetical protein; hypothetical protein 113107 11043906 Acife_0098 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782664.1 112490 D 743299 CDS YP_004782665.1 344198339 11041441 complement(113191..114729) 1 NC_015942.1 PFAM: Glucan biosynthesis, periplasmic, MdoG C-terminal; KEGG: afr:AFE_0960 glucan biosynthesis protein D; periplasmic glucan biosynthesis protein MdoG 114729 11041441 Acife_0099 Acidithiobacillus ferrivorans SS3 periplasmic glucan biosynthesis protein MdoG YP_004782665.1 113191 R 743299 CDS YP_004782666.1 344198340 11041442 115170..115301 1 NC_015942.1 hypothetical protein 115301 11041442 Acife_0100 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782666.1 115170 D 743299 CDS YP_004782667.1 344198341 11043907 115292..116113 1 NC_015942.1 PFAM: Signal transduction response regulator, C-terminal; KEGG: afe:Lferr_2550 putative winged helix family two component transcriptional regulator; winged helix family transcriptional regulator 116113 11043907 Acife_0101 Acidithiobacillus ferrivorans SS3 winged helix family transcriptional regulator YP_004782667.1 115292 D 743299 CDS YP_004782668.1 344198342 11041443 116271..116642 1 NC_015942.1 hypothetical protein 116642 11041443 Acife_0102 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782668.1 116271 D 743299 CDS YP_004782669.1 344198343 11041444 116662..117351 1 NC_015942.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: afr:AFE_2273 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 117351 11041444 Acife_0103 Acidithiobacillus ferrivorans SS3 MotA/TolQ/ExbB proton channel YP_004782669.1 116662 D 743299 CDS YP_004782670.1 344198344 11043908 117351..117752 1 NC_015942.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: afr:AFE_2269 biopolymer transport protein, ExbD/TolR family; biopolymer transport protein ExbD/TolR 117752 11043908 Acife_0104 Acidithiobacillus ferrivorans SS3 biopolymer transport protein ExbD/TolR YP_004782670.1 117351 D 743299 CDS YP_004782671.1 344198345 11041445 117781..120186 1 NC_015942.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: afr:AFE_2935 TonB-dependent receptor; TonB-dependent receptor 120186 11041445 Acife_0105 Acidithiobacillus ferrivorans SS3 TonB-dependent receptor YP_004782671.1 117781 D 743299 CDS YP_004782672.1 344198346 11041446 120380..122779 1 NC_015942.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: afe:Lferr_2552 TonB-dependent receptor; TonB-dependent receptor 122779 11041446 Acife_0106 Acidithiobacillus ferrivorans SS3 TonB-dependent receptor YP_004782672.1 120380 D 743299 CDS YP_004782673.1 344198347 11043909 123167..123745 1 NC_015942.1 KEGG: afr:AFE_2942 hypothetical protein; hypothetical protein 123745 11043909 Acife_0107 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782673.1 123167 D 743299 CDS YP_004782674.1 344198348 11041447 complement(124081..124248) 1 NC_015942.1 hypothetical protein 124248 11041447 Acife_0108 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782674.1 124081 R 743299 CDS YP_004782675.1 344198349 11041448 complement(124453..124617) 1 NC_015942.1 hypothetical protein 124617 11041448 Acife_0109 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782675.1 124453 R 743299 CDS YP_004782676.1 344198350 11043910 complement(124852..127419) 1 NC_015942.1 KEGG: afr:AFE_2944 cation transporting P-type ATPase; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; P-type HAD superfamily ATPase 127419 11043910 Acife_0110 Acidithiobacillus ferrivorans SS3 P-type HAD superfamily ATPase YP_004782676.1 124852 R 743299 CDS YP_004782677.1 344198351 11041449 complement(127472..129412) 1 NC_015942.1 TIGRFAM: Exodeoxyribonuclease V, alpha subunit; KEGG: afr:AFE_2933 exodeoxyribonuclease V, alpha subunit; exodeoxyribonuclease V subunit alpha 129412 11041449 Acife_0111 Acidithiobacillus ferrivorans SS3 exodeoxyribonuclease V subunit alpha YP_004782677.1 127472 R 743299 CDS YP_004782678.1 344198352 11041450 complement(129409..133017) 1 NC_015942.1 KEGG: afr:AFE_2932 exodeoxyribonuclease V, beta subunit; TIGRFAM: Exodeoxyribonuclease V, beta subunit; PFAM: DNA helicase, UvrD/REP type; exodeoxyribonuclease V subunit beta 133017 11041450 Acife_0112 Acidithiobacillus ferrivorans SS3 exodeoxyribonuclease V subunit beta YP_004782678.1 129409 R 743299 CDS YP_004782679.1 344198353 11043911 complement(133014..136406) 1 NC_015942.1 KEGG: afr:AFE_2931 exodeoxyribonuclease V, gamma subunit; TIGRFAM: Exodeoxyribonuclease V, RecC subunit; PFAM: Exodeoxyribonuclease V, RecC subunit; exodeoxyribonuclease V subunit gamma 136406 11043911 Acife_0113 Acidithiobacillus ferrivorans SS3 exodeoxyribonuclease V subunit gamma YP_004782679.1 133014 R 743299 CDS YP_004782680.1 344198354 11041451 complement(136403..137218) 1 NC_015942.1 PFAM: Protein of unknown function DUF2063; KEGG: mep:MPQ_1793 hypothetical protein; hypothetical protein 137218 11041451 Acife_0114 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782680.1 136403 R 743299 CDS YP_004782681.1 344198355 11041452 complement(137181..138035) 1 NC_015942.1 PFAM: Protein of unknown function DUF692; KEGG: tgr:Tgr7_2641 hypothetical protein; hypothetical protein 138035 11041452 Acife_0115 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782681.1 137181 R 743299 CDS YP_004782682.1 344198356 11043912 complement(138140..138406) 1 NC_015942.1 hypothetical protein 138406 11043912 Acife_0116 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782682.1 138140 R 743299 CDS YP_004782683.1 344198357 11041453 complement(138606..139523) 1 NC_015942.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: afr:AFE_0238 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis acyltransferase 139523 11041453 Acife_0117 Acidithiobacillus ferrivorans SS3 lipid A biosynthesis acyltransferase YP_004782683.1 138606 R 743299 CDS YP_004782684.1 344198358 11041454 139802..140665 1 NC_015942.1 KEGG: lch:Lcho_1854 transglutaminase domain-containing protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like; transglutaminase domain-containing protein 140665 11041454 Acife_0118 Acidithiobacillus ferrivorans SS3 transglutaminase domain-containing protein YP_004782684.1 139802 D 743299 CDS YP_004782685.1 344198359 11043913 140680..141399 1 NC_015942.1 KEGG: lch:Lcho_1403 hypothetical protein; hypothetical protein 141399 11043913 Acife_0119 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782685.1 140680 D 743299 CDS YP_004782686.1 344198360 11041455 complement(141484..142743) 1 NC_015942.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: afr:AFE_2929 cyclopropane-fatty-acyl-phospholipid synthase; cyclopropane-fatty-acyl-phospholipid synthase 142743 11041455 Acife_0120 Acidithiobacillus ferrivorans SS3 cyclopropane-fatty-acyl-phospholipid synthase YP_004782686.1 141484 R 743299 CDS YP_004782687.1 344198361 11041456 complement(142857..143171) 1 NC_015942.1 PFAM: Protein of unknown function DUF190; KEGG: afr:AFE_2927 hypothetical protein; hypothetical protein 143171 11041456 Acife_0121 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782687.1 142857 R 743299 CDS YP_004782688.1 344198362 11043914 complement(143182..143559) 1 NC_015942.1 TIGRFAM: Camphor resistance CrcB protein; HAMAP: CrcB-like protein; KEGG: afr:AFE_2926 CrcB protein, putative; PFAM: Camphor resistance CrcB protein; CrcB-like protein 143559 11043914 Acife_0122 Acidithiobacillus ferrivorans SS3 CrcB-like protein YP_004782688.1 143182 R 743299 CDS YP_004782689.1 344198363 11041458 complement(144020..145729) 1 NC_015942.1 PFAM: Glycosyl transferase, family 39; KEGG: afr:AFE_2925 dolichyl-phosphate-mannose-protein mannosyltransferase family protein; glycosyl transferase family protein 145729 11041458 Acife_0124 Acidithiobacillus ferrivorans SS3 glycosyl transferase family protein YP_004782689.1 144020 R 743299 CDS YP_004782690.1 344198364 11041460 146169..146393 1 NC_015942.1 KEGG: axy:AXYL_06058 hypothetical protein; hypothetical protein 146393 11041460 Acife_0126 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782690.1 146169 D 743299 CDS YP_004782691.1 344198365 11041461 146445..146744 1 NC_015942.1 PFAM: Helix-turn-helix type 3; KEGG: mmw:Mmwyl1_3898 helix-turn-helix domain-containing protein; XRE family transcriptional regulator 146744 11041461 Acife_0127 Acidithiobacillus ferrivorans SS3 XRE family transcriptional regulator YP_004782691.1 146445 D 743299 CDS YP_004782692.1 344198366 11041462 complement(146887..148290) 1 NC_015942.1 PFAM: Glycosyl transferase, group 1; KEGG: bam:Bamb_0758 glycosyl transferase, group 1; group 1 glycosyl transferase 148290 11041462 Acife_0128 Acidithiobacillus ferrivorans SS3 group 1 glycosyl transferase YP_004782692.1 146887 R 743299 CDS YP_004782693.1 344198367 11041463 complement(148287..149114) 1 NC_015942.1 KEGG: dte:Dester_1313 methyltransferase type 11; hypothetical protein 149114 11041463 Acife_0129 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782693.1 148287 R 743299 CDS YP_004782694.1 344198368 11043915 complement(149115..150632) 1 NC_015942.1 PFAM: Polysaccharide biosynthesis protein; KEGG: afr:AFE_0076 polysaccharide biosynthesis protein; polysaccharide biosynthesis protein 150632 11043915 Acife_0130 Acidithiobacillus ferrivorans SS3 polysaccharide biosynthesis protein YP_004782694.1 149115 R 743299 CDS YP_004782695.1 344198369 11041464 150665..150871 1 NC_015942.1 hypothetical protein 150871 11041464 Acife_0131 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782695.1 150665 D 743299 CDS YP_004782696.1 344198370 11041465 150853..151431 1 NC_015942.1 KEGG: afr:AFE_0071 peptidoglycan-associated lipoprotein, putative; TIGRFAM: Peptidoglycan-associated lipoprotein; PFAM: Outer membrane protein, OmpA/MotB, C-terminal; peptidoglycan-associated lipoprotein 151431 11041465 Acife_0132 Acidithiobacillus ferrivorans SS3 peptidoglycan-associated lipoprotein YP_004782696.1 150853 D 743299 CDS YP_004782697.1 344198371 11043916 151452..152255 1 NC_015942.1 KEGG: afr:AFE_0070 hypothetical protein; TIGRFAM: Tol-Pal system, YbgF; PFAM: Tetratricopeptide TPR-1; tol-pal system protein YbgF 152255 11043916 Acife_0133 Acidithiobacillus ferrivorans SS3 tol-pal system protein YbgF YP_004782697.1 151452 D 743299 CDS YP_004782698.1 344198372 11041466 152255..152899 1 NC_015942.1 PFAM: Radical SAM; KEGG: afr:AFE_0069 radical SAM domain protein; radical SAM domain-containing protein 152899 11041466 Acife_0134 Acidithiobacillus ferrivorans SS3 radical SAM domain-containing protein YP_004782698.1 152255 D 743299 CDS YP_004782699.1 344198373 11041467 152902..153591 1 NC_015942.1 KEGG: afr:AFE_0068 ExsB protein; TIGRFAM: Exoenzyme S synthesis protein B/queuosine synthesis; PFAM: Queuosine synthesis-like; exsB protein 153591 11041467 Acife_0135 Acidithiobacillus ferrivorans SS3 exsB protein YP_004782699.1 152902 D 743299 CDS YP_004782700.1 344198374 11041468 complement(153604..154875) 1 NC_015942.1 TIGRFAM: Tol-Pal system beta propeller repeat-containing protein, TolB; HAMAP: Tol-Pal system beta propeller repeat-containing protein, TolB; KEGG: afr:AFE_0067 tol-pal system beta propeller repeat protein TolB; PFAM: TolB, N-terminal; WD40-like Beta Propeller; protein tolB 154875 11041468 Acife_0136 Acidithiobacillus ferrivorans SS3 protein tolB YP_004782700.1 153604 R 743299 CDS YP_004782701.1 344198375 11041469 complement(154868..155863) 1 NC_015942.1 TIGRFAM: Tol-Pal system, TolA; KEGG: afr:AFE_0066 TolA protein; protein TolA 155863 11041469 Acife_0137 Acidithiobacillus ferrivorans SS3 protein TolA YP_004782701.1 154868 R 743299 CDS YP_004782702.1 344198376 11041470 complement(155860..156270) 1 NC_015942.1 KEGG: afr:AFE_0065 TolR protein; TIGRFAM: Biopolymer transport, TolR; PFAM: Biopolymer transport protein ExbD/TolR; protein TolR 156270 11041470 Acife_0138 Acidithiobacillus ferrivorans SS3 protein TolR YP_004782702.1 155860 R 743299 CDS YP_004782703.1 344198377 11041471 complement(156267..156968) 1 NC_015942.1 KEGG: afr:AFE_0064 TolQ protein; TIGRFAM: Tol-Pal system, TolQ; PFAM: MotA/TolQ/ExbB proton channel; protein TolQ 156968 11041471 Acife_0139 Acidithiobacillus ferrivorans SS3 protein TolQ YP_004782703.1 156267 R 743299 CDS YP_004782704.1 344198378 11041472 complement(156975..157397) 1 NC_015942.1 KEGG: afr:AFE_0063 tol-pal system-associated acyl-CoA thioesterase; TIGRFAM: Tol-Pal system-associated acyl-CoA thioesterase; 4-hydroxybenzoyl-CoA thioesterase; PFAM: Thioesterase superfamily; tol-pal system-associated acyl-CoA thioesterase 157397 11041472 Acife_0140 Acidithiobacillus ferrivorans SS3 tol-pal system-associated acyl-CoA thioesterase YP_004782704.1 156975 R 743299 CDS YP_004782705.1 344198379 11043917 complement(157387..158412) 1 NC_015942.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA helicase, Holliday junction RuvB type; KEGG: afr:AFE_0062 Holliday junction DNA helicase RuvB; HAMAP: DNA helicase, Holliday junction RuvB type; PFAM: DNA helicase, Holliday junction RuvB type, C-terminal; ATPase, AAA-type, core; DNA helicase, Holliday junction RuvB type, N-terminal; Holliday junction ATP-dependent DNA helicase ruvB 158412 11043917 Acife_0141 Acidithiobacillus ferrivorans SS3 Holliday junction ATP-dependent DNA helicase ruvB YP_004782705.1 157387 R 743299 CDS YP_004782706.1 344198380 11041473 complement(158452..159033) 1 NC_015942.1 TIGRFAM: Bacterial DNA recombination protein RuvA; HAMAP: Holliday junction ATP-dependent DNA helicase ruvA; KEGG: afr:AFE_0061 Holliday junction DNA helicase RuvA; PFAM: DNA helicase, Holliday junction RuvA type, domain I, bacterial; DNA helicase, Holliday junction RuvA type, domain III, C-terminal; Holliday junction ATP-dependent DNA helicase ruvA 159033 11041473 Acife_0142 Acidithiobacillus ferrivorans SS3 Holliday junction ATP-dependent DNA helicase ruvA YP_004782706.1 158452 R 743299 CDS YP_004782707.1 344198381 11041474 complement(159064..159609) 1 NC_015942.1 TIGRFAM: Crossover junction endodeoxyribonuclease RuvC; HAMAP: Crossover junction endodeoxyribonuclease RuvC; KEGG: afe:Lferr_0061 Holliday junction resolvase; PFAM: Crossover junction endodeoxyribonuclease RuvC; Crossover junction endodeoxyribonuclease ruvC 159609 11041474 Acife_0143 Acidithiobacillus ferrivorans SS3 Crossover junction endodeoxyribonuclease ruvC YP_004782707.1 159064 R 743299 CDS YP_004782708.1 344198382 11043918 complement(159644..160396) 1 NC_015942.1 TIGRFAM: Protein of unknown function DUF28; HAMAP: Protein of unknown function DUF28; KEGG: afr:AFE_0059 hypothetical protein; PFAM: Protein of unknown function DUF28; hypothetical protein 160396 11043918 Acife_0144 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782708.1 159644 R 743299 CDS YP_004782709.1 344198383 11041475 complement(160471..161082) 1 NC_015942.1 KEGG: afr:AFE_0058 acyltransferase family protein; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 161082 11041475 Acife_0145 Acidithiobacillus ferrivorans SS3 phospholipid/glycerol acyltransferase YP_004782709.1 160471 R 743299 CDS YP_004782710.1 344198384 11041476 complement(161091..162188) 1 NC_015942.1 TIGRFAM: Quinolinate synthetase A; HAMAP: Quinolinate synthase A; KEGG: afe:Lferr_0058 quinolinate synthetase; PFAM: Quinolinate synthetase A; quinolinate synthase A 162188 11041476 Acife_0146 Acidithiobacillus ferrivorans SS3 quinolinate synthase A YP_004782710.1 161091 R 743299 CDS YP_004782711.1 344198385 11041477 complement(162274..164064) 1 NC_015942.1 KEGG: afr:AFE_0056 aspartyl-tRNA synthetase; TIGRFAM: Aspartyl-tRNA synthetase, class IIb, bacterial/mitochondrial type; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; GAD domain; aspartyl-tRNA synthetase 164064 11041477 Acife_0147 Acidithiobacillus ferrivorans SS3 aspartyl-tRNA synthetase YP_004782711.1 162274 R 743299 CDS YP_004782712.1 344198386 11041478 complement(164148..164408) 1 NC_015942.1 KEGG: afr:AFE_0055 hypothetical protein; TIGRFAM: Regulatory protein, FmdB, putative; PFAM: Regulatory protein, FmdB, putative; FmdB family regulatory protein 164408 11041478 Acife_0148 Acidithiobacillus ferrivorans SS3 FmdB family regulatory protein YP_004782712.1 164148 R 743299 CDS YP_004782713.1 344198387 11041479 164519..165175 1 NC_015942.1 KEGG: afe:Lferr_0055 multiple antibiotic resistance (MarC)-like protein; TIGRFAM: Multiple antibiotic resistance (MarC)-related; PFAM: Multiple antibiotic resistance (MarC)-related; multiple antibiotic resistance (MarC)-like protein 165175 11041479 Acife_0149 Acidithiobacillus ferrivorans SS3 multiple antibiotic resistance (MarC)-like protein YP_004782713.1 164519 D 743299 CDS YP_004782714.1 344198388 11041480 complement(165203..165532) 1 NC_015942.1 PFAM: Protein of unknown function DUF202; KEGG: hypothetical protein; hypothetical protein 165532 11041480 Acife_0150 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782714.1 165203 R 743299 CDS YP_004782715.1 344198389 11041481 165956..167623 1 NC_015942.1 TIGRFAM: ATP-binding cassette protein, ChvD family; PFAM: ABC transporter-like; KEGG: afr:AFE_0036 putative ABC transporter ATP-binding protein; SMART: ATPase, AAA+ type, core; ChvD family ATP-binding cassette protein 167623 11041481 Acife_0151 Acidithiobacillus ferrivorans SS3 ChvD family ATP-binding cassette protein YP_004782715.1 165956 D 743299 CDS YP_004782716.1 344198390 11041482 167774..167908 1 NC_015942.1 TIGRFAM: Ribosomal protein L34; HAMAP: 50S ribosomal protein L34; KEGG: afr:AFE_0035 50S ribosomal protein L34; PFAM: Ribosomal protein L34; 50S ribosomal protein L34 167908 11041482 Acife_0152 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L34 YP_004782716.1 167774 D 743299 CDS YP_004782717.1 344198391 11043919 167912..168262 1 NC_015942.1 TIGRFAM: Ribonuclease P; HAMAP: Ribonuclease P; KEGG: afr:AFE_0034 ribonuclease P protein component; PFAM: Ribonuclease P; ribonuclease P protein component 168262 11043919 Acife_0153 Acidithiobacillus ferrivorans SS3 ribonuclease P protein component YP_004782717.1 167912 D 743299 CDS YP_004782718.1 344198392 11041483 168259..168474 1 NC_015942.1 TIGRFAM: Protein of unknown function DUF37; HAMAP: Protein of unknown function DUF37; KEGG: afr:AFE_0033 conserved hypothetical protein TIGR00278; PFAM: Protein of unknown function DUF37; hypothetical protein 168474 11041483 Acife_0154 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782718.1 168259 D 743299 CDS YP_004782719.1 344198393 11041484 168490..170094 1 NC_015942.1 TIGRFAM: Membrane insertion protein, OxaA/YidC, core; Membrane insertion protein, OxoA/YidC, N-terminal; HAMAP: Membrane protein oxaA; KEGG: afr:AFE_0032 inner membrane protein, 60 kDa; PFAM: Membrane insertion protein, OxaA/YidC; membrane protein oxaA 170094 11041484 Acife_0155 Acidithiobacillus ferrivorans SS3 membrane protein oxaA YP_004782719.1 168490 D 743299 CDS YP_004782720.1 344198394 11043920 170123..171478 1 NC_015942.1 TIGRFAM: tRNA modification GTPase TrmE; Small GTP-binding protein; HAMAP: tRNA modification GTPase TrmE; KEGG: afr:AFE_0031 tRNA modification GTPase TrmE; PFAM: GTP-binding protein TrmE, N-terminal; GTP-binding protein, HSR1-related; tRNA modification GTPase mnmE 171478 11043920 Acife_0156 Acidithiobacillus ferrivorans SS3 tRNA modification GTPase mnmE YP_004782720.1 170123 D 743299 CDS YP_004782721.1 344198395 11041485 complement(171588..171788) 1 NC_015942.1 KEGG: afr:AFE_0921 hypothetical protein; hypothetical protein 171788 11041485 Acife_0157 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782721.1 171588 R 743299 CDS YP_004782722.1 344198396 11041486 complement(171799..173169) 1 NC_015942.1 KEGG: afr:AFE_0920 metal ion transporter, NRAMP family; NRAMP family metal ion transporter 173169 11041486 Acife_0158 Acidithiobacillus ferrivorans SS3 NRAMP family metal ion transporter YP_004782722.1 171799 R 743299 CDS YP_004782723.1 344198397 11041487 complement(173929..174630) 1 NC_015942.1 PFAM: Protein of unknown function DUF45; KEGG: mca:MCA1894 hypothetical protein; hypothetical protein 174630 11041487 Acife_0160 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782723.1 173929 R 743299 CDS YP_004782724.1 344198398 11041488 complement(174636..177878) 1 NC_015942.1 TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: mca:MCA1893 type I restriction-modification system, R subunit; SMART: DEAD-like helicase, N-terminal; HsdR family type I site-specific deoxyribonuclease 177878 11041488 Acife_0161 Acidithiobacillus ferrivorans SS3 HsdR family type I site-specific deoxyribonuclease YP_004782724.1 174636 R 743299 CDS YP_004782725.1 344198399 11041489 complement(178084..178821) 1 NC_015942.1 KEGG: hypothetical protein; hypothetical protein 178821 11041489 Acife_0162 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782725.1 178084 R 743299 CDS YP_004782726.1 344198400 11041490 complement(178818..179987) 1 NC_015942.1 PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: Restriction modification system DNA specificity domain protein; restriction modification system DNA specificity domain-containing protein 179987 11041490 Acife_0163 Acidithiobacillus ferrivorans SS3 restriction modification system DNA specificity domain-containing protein YP_004782726.1 178818 R 743299 CDS YP_004782727.1 344198401 11043922 complement(179984..181054) 1 NC_015942.1 KEGG: dde:Dde_2497 hypothetical protein; hypothetical protein 181054 11043922 Acife_0164 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782727.1 179984 R 743299 CDS YP_004782728.1 344198402 11041491 complement(181051..182610) 1 NC_015942.1 KEGG: mca:MCA1888 type I restriction-modification system, M subunit; TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit; PFAM: DNA methylase, adenine-specific; type I restriction-modification system, M subunit 182610 11041491 Acife_0165 Acidithiobacillus ferrivorans SS3 type I restriction-modification system, M subunit YP_004782728.1 181051 R 743299 CDS YP_004782729.1 344198403 11041492 complement(182607..183188) 1 NC_015942.1 KEGG: mca:MCA1886 hypothetical protein; hypothetical protein 183188 11041492 Acife_0166 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782729.1 182607 R 743299 CDS YP_004782730.1 344198404 11041493 complement(183704..184480) 1 NC_015942.1 KEGG: afr:AFE_3235 ABC-2 type transporter, permease protein, NodJ family; TIGRFAM: ABC-2 type transporter, NodJ; PFAM: ABC-2 type transporter; ABC transporter 184480 11041493 Acife_0167 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004782730.1 183704 R 743299 CDS YP_004782731.1 344198405 11043924 complement(184480..185421) 1 NC_015942.1 KEGG: afr:AFE_3236 ABC transporter, ATP-binding protein, NodI family; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 185421 11043924 Acife_0168 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004782731.1 184480 R 743299 CDS YP_004782732.1 344198406 11041494 complement(185390..186118) 1 NC_015942.1 KEGG: afe:Lferr_2838 hypothetical protein; hypothetical protein 186118 11041494 Acife_0169 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782732.1 185390 R 743299 CDS YP_004782733.1 344198407 11041495 complement(186118..186435) 1 NC_015942.1 KEGG: afr:AFE_3238 ferredoxin, putative; ferredoxin 186435 11041495 Acife_0170 Acidithiobacillus ferrivorans SS3 ferredoxin YP_004782733.1 186118 R 743299 CDS YP_004782734.1 344198408 11041496 186508..187134 1 NC_015942.1 KEGG: afr:AFE_3239 COQ7 family protein; COQ7 family protein 187134 11041496 Acife_0171 Acidithiobacillus ferrivorans SS3 COQ7 family protein YP_004782734.1 186508 D 743299 CDS YP_004782735.1 344198409 11041497 complement(187139..187624) 1 NC_015942.1 KEGG: afr:AFE_3240 Rrf2 family protein; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2; BadM/Rrf2 family transcriptional regulator 187624 11041497 Acife_0172 Acidithiobacillus ferrivorans SS3 BadM/Rrf2 family transcriptional regulator YP_004782735.1 187139 R 743299 CDS YP_004782736.1 344198410 11041498 complement(187635..188060) 1 NC_015942.1 PFAM: Peroxiredoxin, OsmC-like protein; KEGG: afr:AFE_3241 OsmC/Ohr family protein; OsmC family protein 188060 11041498 Acife_0173 Acidithiobacillus ferrivorans SS3 OsmC family protein YP_004782736.1 187635 R 743299 CDS YP_004782737.1 344198411 11041499 complement(188131..188922) 1 NC_015942.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: afr:AFE_3242 indole-3-glycerol phosphate synthase; Indole-3-glycerol phosphate synthase 188922 11041499 Acife_0174 Acidithiobacillus ferrivorans SS3 Indole-3-glycerol phosphate synthase YP_004782737.1 188131 R 743299 CDS YP_004782738.1 344198412 11041500 complement(188926..189942) 1 NC_015942.1 TIGRFAM: Anthranilate phosphoribosyl transferase; HAMAP: Anthranilate phosphoribosyl transferase; KEGG: afr:AFE_3243 anthranilate phosphoribosyltransferase; PFAM: Glycosyl transferase, family 3; Glycosyl transferase, family 3, N-terminal; anthranilate phosphoribosyltransferase 189942 11041500 Acife_0175 Acidithiobacillus ferrivorans SS3 anthranilate phosphoribosyltransferase YP_004782738.1 188926 R 743299 CDS YP_004782739.1 344198413 11043925 complement(189939..190511) 1 NC_015942.1 KEGG: afr:AFE_3244 para-aminobenzoate synthase glutamine amidotransferase component II; TIGRFAM: Glutamine amidotransferase of anthranilate synthase; PFAM: Glutamine amidotransferase class-I, C-terminal; glutamine amidotransferase of anthranilate synthase 190511 11043925 Acife_0176 Acidithiobacillus ferrivorans SS3 glutamine amidotransferase of anthranilate synthase YP_004782739.1 189939 R 743299 CDS YP_004782740.1 344198414 11041502 complement(190862..192442) 1 NC_015942.1 PFAM: ATPase associated with various cellular activities, AAA-4; KEGG: paa:Paes_2367 putative transcriptional regulator; putative transcriptional regulator 192442 11041502 Acife_0178 Acidithiobacillus ferrivorans SS3 putative transcriptional regulator YP_004782740.1 190862 R 743299 CDS YP_004782741.1 344198415 11041504 complement(192811..193071) 1 NC_015942.1 KEGG: syp:SYNPCC7002_A0406 AbrB family transcriptional regulator; TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; AbrB family transcriptional regulator 193071 11041504 Acife_0180 Acidithiobacillus ferrivorans SS3 AbrB family transcriptional regulator YP_004782741.1 192811 R 743299 CDS YP_004782742.1 344198416 11043926 complement(193123..194640) 1 NC_015942.1 KEGG: afr:AFE_3245 anthranilate synthase component I; TIGRFAM: Anthranilate synthase component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; anthranilate synthase component I 194640 11043926 Acife_0181 Acidithiobacillus ferrivorans SS3 anthranilate synthase component I YP_004782742.1 193123 R 743299 CDS YP_004782743.1 344198417 11041505 complement(194750..195430) 1 NC_015942.1 TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; HAMAP: Phosphoglycolate phosphatase; KEGG: afr:AFE_3246 phosphoglycolate phosphatase; PFAM: Haloacid dehalogenase-like hydrolase; phosphoglycolate phosphatase 195430 11041505 Acife_0182 Acidithiobacillus ferrivorans SS3 phosphoglycolate phosphatase YP_004782743.1 194750 R 743299 CDS YP_004782744.1 344198418 11043927 complement(195434..196096) 1 NC_015942.1 KEGG: afr:AFE_3247 ribulose-phosphate 3-epimerase; TIGRFAM: Ribulose-phosphate 3-epimerase; PFAM: Ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 196096 11043927 Acife_0183 Acidithiobacillus ferrivorans SS3 ribulose-phosphate 3-epimerase YP_004782744.1 195434 R 743299 CDS YP_004782745.1 344198419 11041506 complement(196161..197231) 1 NC_015942.1 KEGG: afr:AFE_3248 fructose-bisphosphate aldolase, class II; TIGRFAM: Fructose-bisphosphate aldolase, class II, Calvin cycle subtype; Ketose-bisphosphate aldolase, class-II; PFAM: Ketose-bisphosphate aldolase, class-II; fructose-bisphosphate aldolase, class II, Calvin cycle subtype 197231 11041506 Acife_0184 Acidithiobacillus ferrivorans SS3 fructose-bisphosphate aldolase, class II, Calvin cycle subtype YP_004782745.1 196161 R 743299 CDS YP_004782746.1 344198420 11041507 complement(197340..198779) 1 NC_015942.1 KEGG: afr:AFE_3249 pyruvate kinase II; TIGRFAM: Pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; pyruvate kinase 198779 11041507 Acife_0185 Acidithiobacillus ferrivorans SS3 pyruvate kinase YP_004782746.1 197340 R 743299 CDS YP_004782747.1 344198421 11043928 complement(198776..199981) 1 NC_015942.1 KEGG: afr:AFE_3250 phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; phosphoglycerate kinase 199981 11043928 Acife_0186 Acidithiobacillus ferrivorans SS3 phosphoglycerate kinase YP_004782747.1 198776 R 743299 CDS YP_004782748.1 344198422 11041508 complement(199996..201012) 1 NC_015942.1 KEGG: afr:AFE_3251 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; glyceraldehyde-3-phosphate dehydrogenase, type I 201012 11041508 Acife_0187 Acidithiobacillus ferrivorans SS3 glyceraldehyde-3-phosphate dehydrogenase, type I YP_004782748.1 199996 R 743299 CDS YP_004782749.1 344198423 11043929 complement(201048..203045) 1 NC_015942.1 KEGG: afe:Lferr_2853 transketolase; TIGRFAM: Transketolase, bacterial-like; PFAM: Transketolase, N-terminal; Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; transketolase 203045 11043929 Acife_0188 Acidithiobacillus ferrivorans SS3 transketolase YP_004782749.1 201048 R 743299 CDS YP_004782750.1 344198424 11041509 complement(203071..204015) 1 NC_015942.1 KEGG: afr:AFE_3253 fructose 1,6-bisphosphatase II; TIGRFAM: GlpX; PFAM: GlpX; fructose-1,6-bisphosphatase, class II 204015 11041509 Acife_0189 Acidithiobacillus ferrivorans SS3 fructose-1,6-bisphosphatase, class II YP_004782750.1 203071 R 743299 CDS YP_004782751.1 344198425 11041510 complement(204071..204886) 1 NC_015942.1 PFAM: Inositol monophosphatase; KEGG: afr:AFE_3254 inositol monophosphatase family protein; inositol monophosphatase 204886 11041510 Acife_0190 Acidithiobacillus ferrivorans SS3 inositol monophosphatase YP_004782751.1 204071 R 743299 CDS YP_004782752.1 344198426 11041511 complement(204913..205356) 1 NC_015942.1 KEGG: afr:AFE_3255 hypothetical protein; hypothetical protein 205356 11041511 Acife_0191 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782752.1 204913 R 743299 CDS YP_004782753.1 344198427 11041512 205424..206152 1 NC_015942.1 manually curated; TIGRFAM: Ribosomal RNA small subunit methyltransferase E; KEGG: afr:AFE_3257 conserved hypothetical protein TIGR00046; PFAM: Ribosomal RNA small subunit methyltransferase E; ribosomal RNA small subunit methyltransferase E 206152 11041512 Acife_0192 Acidithiobacillus ferrivorans SS3 ribosomal RNA small subunit methyltransferase E YP_004782753.1 205424 D 743299 CDS YP_004782754.1 344198428 11043930 complement(206163..207128) 1 NC_015942.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: mms:mma_0084 Mg2+/Co2+ transporter; Mg2 transporter protein CorA family protein 207128 11043930 Acife_0193 Acidithiobacillus ferrivorans SS3 Mg2 transporter protein CorA family protein YP_004782754.1 206163 R 743299 CDS YP_004782755.1 344198429 11041513 207368..208321 1 NC_015942.1 TIGRFAM: LytB protein; HAMAP: LytB protein; KEGG: afr:AFE_3258 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; PFAM: LytB protein; 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 208321 11041513 Acife_0194 Acidithiobacillus ferrivorans SS3 4-hydroxy-3-methylbut-2-enyl diphosphate reductase YP_004782755.1 207368 D 743299 CDS YP_004782756.1 344198430 11043931 complement(208358..209896) 1 NC_015942.1 PFAM: RmuC; KEGG: afe:Lferr_2859 hypothetical protein; RmuC-domain-containing protein 209896 11043931 Acife_0195 Acidithiobacillus ferrivorans SS3 RmuC-domain-containing protein YP_004782756.1 208358 R 743299 CDS YP_004782757.1 344198431 11041514 complement(210026..210481) 1 NC_015942.1 TIGRFAM: Large-conductance mechanosensitive channel; HAMAP: Large-conductance mechanosensitive channel; KEGG: afr:AFE_3260 large conductance mechanosensitive channel protein; PFAM: Large-conductance mechanosensitive channel; Uncharacterised protein family UPF0547; Large-conductance mechanosensitive channel 210481 11041514 Acife_0196 Acidithiobacillus ferrivorans SS3 Large-conductance mechanosensitive channel YP_004782757.1 210026 R 743299 CDS YP_004782758.1 344198432 11041515 complement(210602..211117) 1 NC_015942.1 KEGG: afr:AFE_3261 lipoprotein, putative; lipoprotein 211117 11041515 Acife_0197 Acidithiobacillus ferrivorans SS3 lipoprotein YP_004782758.1 210602 R 743299 CDS YP_004782759.1 344198433 11043932 complement(211201..214284) 1 NC_015942.1 PFAM: Acriflavin resistance protein; KEGG: afr:AFE_3262 transporter, AcrB/AcrD/AcrF family; acriflavin resistance protein 214284 11043932 Acife_0198 Acidithiobacillus ferrivorans SS3 acriflavin resistance protein YP_004782759.1 211201 R 743299 CDS YP_004782760.1 344198434 11041516 complement(214281..215411) 1 NC_015942.1 KEGG: afe:Lferr_2863 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 215411 11041516 Acife_0199 Acidithiobacillus ferrivorans SS3 RND family efflux transporter MFP subunit YP_004782760.1 214281 R 743299 CDS YP_004782761.1 344198435 11043933 complement(215408..216838) 1 NC_015942.1 PFAM: Outer membrane efflux protein; KEGG: afr:AFE_3265 outer membrane efflux protein; outer membrane efflux protein 216838 11043933 Acife_0200 Acidithiobacillus ferrivorans SS3 outer membrane efflux protein YP_004782761.1 215408 R 743299 CDS YP_004782762.1 344198436 11041517 217067..217930 1 NC_015942.1 KEGG: amv:ACMV_28260 hypothetical protein; hypothetical protein 217930 11041517 Acife_0201 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782762.1 217067 D 743299 CDS YP_004782763.1 344198437 11041518 218378..218776 1 NC_015942.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: afr:AFE_3172 glyoxalase family protein; glyoxalase/bleomycin resistance protein/dioxygenase 218776 11041518 Acife_0202 Acidithiobacillus ferrivorans SS3 glyoxalase/bleomycin resistance protein/dioxygenase YP_004782763.1 218378 D 743299 CDS YP_004782764.1 344198438 11043934 218773..219516 1 NC_015942.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_2801 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 219516 11043934 Acife_0203 Acidithiobacillus ferrivorans SS3 short-chain dehydrogenase/reductase SDR YP_004782764.1 218773 D 743299 CDS YP_004782765.1 344198439 11041520 220080..220505 1 NC_015942.1 PFAM: GCN5-related N-acetyltransferase; KEGG: chl:Chy400_3543 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 220505 11041520 Acife_0205 Acidithiobacillus ferrivorans SS3 GCN5-like N-acetyltransferase YP_004782765.1 220080 D 743299 CDS YP_004782766.1 344198440 11043935 220812..221219 1 NC_015942.1 KEGG: afr:AFE_2717 hypothetical protein; hypothetical protein 221219 11043935 Acife_0206 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782766.1 220812 D 743299 CDS YP_004782767.1 344198441 11043936 complement(221529..221972) 1 NC_015942.1 KEGG: afr:AFE_3267 YaiI/YqxD family protein; HAMAP: Protein of unknown function DUF188; PFAM: Protein of unknown function DUF188; hypothetical protein 221972 11043936 Acife_0208 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782767.1 221529 R 743299 CDS YP_004782768.1 344198442 11041522 222146..222469 1 NC_015942.1 TIGRFAM: Prevent-host-death protein; KEGG: afe:Lferr_2866 prevent-host-death family protein; prevent-host-death family protein 222469 11041522 Acife_0209 Acidithiobacillus ferrivorans SS3 prevent-host-death family protein YP_004782768.1 222146 D 743299 CDS YP_004782769.1 344198443 11041523 222476..222907 1 NC_015942.1 TIGRFAM: Protein of unknown function DUF132; KEGG: afe:Lferr_2867 nucleic acid-binding protein, contains PIN domain; hypothetical protein 222907 11041523 Acife_0210 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782769.1 222476 D 743299 CDS YP_004782770.1 344198444 11041524 complement(223148..223816) 1 NC_015942.1 KEGG: ttu:TERTU_0138 nickel-dependent hydrogenase, b-type cytochrome subunit; nickel-dependent hydrogenase, b-type cytochrome subunit 223816 11041524 Acife_0211 Acidithiobacillus ferrivorans SS3 nickel-dependent hydrogenase, b-type cytochrome subunit YP_004782770.1 223148 R 743299 CDS YP_004782771.1 344198445 11041525 complement(223820..224314) 1 NC_015942.1 PFAM: Cytochrome c prime; KEGG: pzu:PHZ_c1138 putative cytochrome c signal peptide protein; cytochrome c prime 224314 11041525 Acife_0212 Acidithiobacillus ferrivorans SS3 cytochrome c prime YP_004782771.1 223820 R 743299 CDS YP_004782772.1 344198446 11041528 225436..226302 1 NC_015942.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: ade:Adeh_2262 hypothetical protein; hypothetical protein 226302 11041528 Acife_0215 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782772.1 225436 D 743299 CDS YP_004782773.1 344198447 11041529 226619..227173 1 NC_015942.1 KEGG: afe:Lferr_2871 hypothetical protein; hypothetical protein 227173 11041529 Acife_0216 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782773.1 226619 D 743299 CDS YP_004782774.1 344198448 11041530 227174..227920 1 NC_015942.1 KEGG: afr:AFE_3274 transcriptional regulator OmpR, putative; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; two component winged helix family transcriptional regulator 227920 11041530 Acife_0217 Acidithiobacillus ferrivorans SS3 two component winged helix family transcriptional regulator YP_004782774.1 227174 D 743299 CDS YP_004782775.1 344198449 11041531 227917..229179 1 NC_015942.1 KEGG: afr:AFE_3275 osmolarity sensor protein EnvZ, putative; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; integral membrane sensor signal transduction histidine kinase 229179 11041531 Acife_0218 Acidithiobacillus ferrivorans SS3 integral membrane sensor signal transduction histidine kinase YP_004782775.1 227917 D 743299 CDS YP_004782776.1 344198450 11041532 complement(229190..229528) 1 NC_015942.1 KEGG: afr:AFE_3276 hypothetical protein; hypothetical protein 229528 11041532 Acife_0219 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782776.1 229190 R 743299 CDS YP_004782777.1 344198451 11043937 229668..231056 1 NC_015942.1 TIGRFAM: Argininosuccinate lyase; HAMAP: Argininosuccinate lyase; KEGG: afr:AFE_3277 argininosuccinate lyase; PFAM: Fumarate lyase; argininosuccinate lyase 231056 11043937 Acife_0220 Acidithiobacillus ferrivorans SS3 argininosuccinate lyase YP_004782777.1 229668 D 743299 CDS YP_004782778.1 344198452 11041533 231053..231238 1 NC_015942.1 KEGG: afr:AFE_3278 lipoprotein, putative; lipoprotein 231238 11041533 Acife_0221 Acidithiobacillus ferrivorans SS3 lipoprotein YP_004782778.1 231053 D 743299 CDS YP_004782779.1 344198453 11041534 231235..232479 1 NC_015942.1 KEGG: afr:AFE_3279 diaminopimelate decarboxylase; TIGRFAM: Diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase 232479 11041534 Acife_0222 Acidithiobacillus ferrivorans SS3 diaminopimelate decarboxylase YP_004782779.1 231235 D 743299 CDS YP_004782780.1 344198454 11041535 232686..234311 1 NC_015942.1 KEGG: afr:AFE_2924 glucose-6-phosphate isomerase; HAMAP: Phosphoglucose isomerase (PGI); PFAM: Phosphoglucose isomerase (PGI); glucose-6-phosphate isomerase 234311 11041535 Acife_0223 Acidithiobacillus ferrivorans SS3 glucose-6-phosphate isomerase YP_004782780.1 232686 D 743299 CDS YP_004782781.1 344198455 11041536 234456..235625 1 NC_015942.1 PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: afr:AFE_2923 D-alanyl-D-alanine carboxypeptidase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 235625 11041536 Acife_0224 Acidithiobacillus ferrivorans SS3 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 YP_004782781.1 234456 D 743299 CDS YP_004782782.1 344198456 11041537 complement(235750..236364) 1 NC_015942.1 PFAM: Glutathione S-transferase, C-terminal; Glutathione S-transferase, N-terminal; KEGG: afr:AFE_2594 glutathione S-transferase; glutathione S-transferase domain-containing protein 236364 11041537 Acife_0225 Acidithiobacillus ferrivorans SS3 glutathione S-transferase domain-containing protein YP_004782782.1 235750 R 743299 CDS YP_004782783.1 344198457 11041538 complement(236432..237034) 1 NC_015942.1 TIGRFAM: Flavoprotein WrbA; HAMAP: Flavoprotein wrbA; KEGG: afr:AFE_0460 TrpR binding protein WrbA; PFAM: Flavodoxin/nitric oxide synthase; Flavoprotein wrbA 237034 11041538 Acife_0226 Acidithiobacillus ferrivorans SS3 Flavoprotein wrbA YP_004782783.1 236432 R 743299 CDS YP_004782784.1 344198458 11041539 237119..237496 1 NC_015942.1 PFAM: Helix-turn-helix, HxlR type; KEGG: afr:AFE_0198 transcriptional regulator; HxlR family transcriptional regulator 237496 11041539 Acife_0227 Acidithiobacillus ferrivorans SS3 HxlR family transcriptional regulator YP_004782784.1 237119 D 743299 CDS YP_004782785.1 344198459 11043938 237553..238206 1 NC_015942.1 PFAM: Lipid/polyisoprenoid-binding, YceI-like; KEGG: afr:AFE_0461 YceI-like family protein; YceI family protein 238206 11043938 Acife_0228 Acidithiobacillus ferrivorans SS3 YceI family protein YP_004782785.1 237553 D 743299 CDS YP_004782786.1 344198460 11041540 complement(238314..238559) 1 NC_015942.1 PFAM: Glutaredoxin; KEGG: afr:AFE_2449 hypothetical protein; glutaredoxin 238559 11041540 Acife_0229 Acidithiobacillus ferrivorans SS3 glutaredoxin YP_004782786.1 238314 R 743299 CDS YP_004782787.1 344198461 11041541 complement(238581..238787) 1 NC_015942.1 PFAM: Heavy metal transport/detoxification protein; KEGG: afr:AFE_1862 heavy metal-binding protein, putative; heavy metal transport/detoxification protein 238787 11041541 Acife_0230 Acidithiobacillus ferrivorans SS3 heavy metal transport/detoxification protein YP_004782787.1 238581 R 743299 CDS YP_004782788.1 344198462 11041542 complement(238850..239245) 1 NC_015942.1 PFAM: Protein of unknown function DUF302; KEGG: afr:AFE_2447 hypothetical protein; hypothetical protein 239245 11041542 Acife_0231 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782788.1 238850 R 743299 CDS YP_004782789.1 344198463 11041543 complement(239274..241775) 1 NC_015942.1 KEGG: hna:Hneap_0924 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; Copper ion-binding; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase 241775 11041543 Acife_0232 Acidithiobacillus ferrivorans SS3 heavy metal translocating P-type ATPase YP_004782789.1 239274 R 743299 CDS YP_004782790.1 344198464 11043939 242256..243503 1 NC_015942.1 PFAM: Ion transport 2; Regulator of K+ conductance, N-terminal; KEGG: afe:Lferr_2537 voltage-gated potassium channel; Ion transport 2 domain-containing protein 243503 11043939 Acife_0233 Acidithiobacillus ferrivorans SS3 Ion transport 2 domain-containing protein YP_004782790.1 242256 D 743299 CDS YP_004782791.1 344198465 11041544 243500..243808 1 NC_015942.1 KEGG: afe:Lferr_2536 hypothetical protein; hypothetical protein 243808 11041544 Acife_0234 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782791.1 243500 D 743299 CDS YP_004782792.1 344198466 11041545 complement(243789..244829) 1 NC_015942.1 KEGG: afr:AFE_2921 rare lipoprotein A, putative; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A; rare lipoprotein A 244829 11041545 Acife_0235 Acidithiobacillus ferrivorans SS3 rare lipoprotein A YP_004782792.1 243789 R 743299 CDS YP_004782793.1 344198467 11041546 complement(245135..245509) 1 NC_015942.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: afr:AFE_2919 lipoprotein, putative; 17 kDa surface antigen 245509 11041546 Acife_0236 Acidithiobacillus ferrivorans SS3 17 kDa surface antigen YP_004782793.1 245135 R 743299 CDS YP_004782794.1 344198468 11041547 245751..246137 1 NC_015942.1 KEGG: afr:AFE_2918 lipoprotein, putative; lipoprotein 246137 11041547 Acife_0237 Acidithiobacillus ferrivorans SS3 lipoprotein YP_004782794.1 245751 D 743299 CDS YP_004782795.1 344198469 11041548 complement(246263..246976) 1 NC_015942.1 PFAM: Glutamine amidotransferase class-I, C-terminal; KEGG: afr:AFE_2917 glutamine amidotransferase class-I domain protein; glutamine amidotransferase class-I 246976 11041548 Acife_0238 Acidithiobacillus ferrivorans SS3 glutamine amidotransferase class-I YP_004782795.1 246263 R 743299 CDS YP_004782796.1 344198470 11041549 complement(246973..248778) 1 NC_015942.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; KEGG: tgr:Tgr7_3175 sensory box protein; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; GAF sensor-containing diguanylate cyclase/phosphodiesterase 248778 11041549 Acife_0239 Acidithiobacillus ferrivorans SS3 GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_004782796.1 246973 R 743299 CDS YP_004782797.1 344198471 11041550 complement(248912..250339) 1 NC_015942.1 KEGG: afo:Afer_1995 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter; ammonium transporter 250339 11041550 Acife_0240 Acidithiobacillus ferrivorans SS3 ammonium transporter YP_004782797.1 248912 R 743299 CDS YP_004782798.1 344198472 11043940 complement(250416..251546) 1 NC_015942.1 PFAM: Sulphate transporter/antisigma-factor antagonist STAS; KEGG: nhl:Nhal_2889 ABC-type phosphate/phosphonate transport system periplasmic component; sulfate transporter/antisigma-factor antagonist STAS 251546 11043940 Acife_0241 Acidithiobacillus ferrivorans SS3 sulfate transporter/antisigma-factor antagonist STAS YP_004782798.1 250416 R 743299 CDS YP_004782799.1 344198473 11041551 complement(251533..254082) 1 NC_015942.1 TIGRFAM: PAS; PFAM: Sporulation stage II, protein E C-terminal; PAS fold-4; KEGG: gur:Gura_1513 stage II sporulation E family protein; SMART: Protein phosphatase 2C-related; PAS; putative PAS/PAC sensor protein 254082 11041551 Acife_0242 Acidithiobacillus ferrivorans SS3 putative PAS/PAC sensor protein YP_004782799.1 251533 R 743299 CDS YP_004782800.1 344198474 11043941 complement(254439..255743) 1 NC_015942.1 KEGG: afr:AFE_2916 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter; ammonium transporter 255743 11043941 Acife_0243 Acidithiobacillus ferrivorans SS3 ammonium transporter YP_004782800.1 254439 R 743299 CDS YP_004782801.1 344198475 11041552 complement(255799..256137) 1 NC_015942.1 PFAM: Nitrogen regulatory protein PII; KEGG: afr:AFE_2915 nitrogen regulatory protein P-II 2; nitrogen regulatory protein P-II 256137 11041552 Acife_0244 Acidithiobacillus ferrivorans SS3 nitrogen regulatory protein P-II YP_004782801.1 255799 R 743299 CDS YP_004782802.1 344198476 11041553 complement(256192..257370) 1 NC_015942.1 KEGG: afr:AFE_2914 hypothetical protein; hypothetical protein 257370 11041553 Acife_0245 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782802.1 256192 R 743299 CDS YP_004782803.1 344198477 11043942 complement(257552..259027) 1 NC_015942.1 PFAM: Sporulation stage V, protein R; KEGG: afr:AFE_2913 SpoVR family protein; SpoVR family protein 259027 11043942 Acife_0246 Acidithiobacillus ferrivorans SS3 SpoVR family protein YP_004782803.1 257552 R 743299 CDS YP_004782804.1 344198478 11041554 complement(259020..260324) 1 NC_015942.1 PFAM: Protein of unknown function DUF444; KEGG: afr:AFE_2912 hypothetical protein; hypothetical protein 260324 11041554 Acife_0247 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782804.1 259020 R 743299 CDS YP_004782805.1 344198479 11041555 complement(260426..261742) 1 NC_015942.1 KEGG: afr:AFE_2911 ammonium transporter; TIGRFAM: Ammonium transporter; PFAM: Ammonium transporter; ammonium transporter 261742 11041555 Acife_0248 Acidithiobacillus ferrivorans SS3 ammonium transporter YP_004782805.1 260426 R 743299 CDS YP_004782806.1 344198480 11043943 complement(262027..263961) 1 NC_015942.1 KEGG: afr:AFE_2910 hypothetical protein; PFAM: PrkA AAA; PrkA serine kinase; SMART: PrkA AAA; putative serine protein kinase, PrkA 263961 11043943 Acife_0249 Acidithiobacillus ferrivorans SS3 putative serine protein kinase, PrkA YP_004782806.1 262027 R 743299 CDS YP_004782807.1 344198481 11041556 264366..264545 1 NC_015942.1 hypothetical protein 264545 11041556 Acife_0250 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782807.1 264366 D 743299 CDS YP_004782808.1 344198482 11041557 264542..265486 1 NC_015942.1 PFAM: Cache; KEGG: slo:Shew_3768 hypothetical protein; Cache domain-containing protein 265486 11041557 Acife_0251 Acidithiobacillus ferrivorans SS3 Cache domain-containing protein YP_004782808.1 264542 D 743299 CDS YP_004782809.1 344198483 11041558 complement(265518..268880) 1 NC_015942.1 KEGG: afr:AFE_2907 transglutaminase-like domain protein; PFAM: Protein of unknown function DUF2126; Bacterial transglutaminase-like, N-terminal; Transglutaminase-like; SMART: Transglutaminase-like; hypothetical protein 268880 11041558 Acife_0252 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782809.1 265518 R 743299 CDS YP_004782810.1 344198484 11043944 complement(268923..269909) 1 NC_015942.1 PFAM: Protein of unknown function DUF403, bacteria; KEGG: afr:AFE_2906 hypothetical protein; hypothetical protein 269909 11043944 Acife_0253 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782810.1 268923 R 743299 CDS YP_004782811.1 344198485 11041559 complement(269894..271357) 1 NC_015942.1 PFAM: Protein of unknown function DUF404, bacteria N-terminal; Protein of unknown function DUF407; KEGG: afr:AFE_2905 hypothetical protein; hypothetical protein 271357 11041559 Acife_0254 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782811.1 269894 R 743299 CDS YP_004782812.1 344198486 11041560 complement(271660..272406) 1 NC_015942.1 PFAM: Proteasome, subunit alpha/beta; KEGG: afr:AFE_2903 hypothetical protein; 20S proteasome subunits A and B 272406 11041560 Acife_0255 Acidithiobacillus ferrivorans SS3 20S proteasome subunits A and B YP_004782812.1 271660 R 743299 CDS YP_004782813.1 344198487 11041561 272716..273801 1 NC_015942.1 KEGG: afr:AFE_2902 nitrogen regulation protein NR(II); PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold-4; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; nitrogen specific signal transduction histidine kinase NtrB 273801 11041561 Acife_0256 Acidithiobacillus ferrivorans SS3 nitrogen specific signal transduction histidine kinase NtrB YP_004782813.1 272716 D 743299 CDS YP_004782814.1 344198488 11041562 273798..275240 1 NC_015942.1 TIGRFAM: Signal transduction response regulator, nitrogen regulation NR(I); PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; KEGG: afr:AFE_2901 nitrogen regulation protein NR(I); SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; Fis family nitrogen metabolism transcriptional regulator NtrC 275240 11041562 Acife_0257 Acidithiobacillus ferrivorans SS3 Fis family nitrogen metabolism transcriptional regulator NtrC YP_004782814.1 273798 D 743299 CDS YP_004782815.1 344198489 11041563 275295..276260 1 NC_015942.1 KEGG: afr:AFE_2900 hypothetical protein; hypothetical protein 276260 11041563 Acife_0258 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782815.1 275295 D 743299 CDS YP_004782816.1 344198490 11041564 276374..277342 1 NC_015942.1 PFAM: Polyprenyl synthetase; KEGG: afr:AFE_2899 octaprenyl-diphosphate synthase; polyprenyl synthetase 277342 11041564 Acife_0259 Acidithiobacillus ferrivorans SS3 polyprenyl synthetase YP_004782816.1 276374 D 743299 CDS YP_004782817.1 344198491 11041566 277755..279815 1 NC_015942.1 PFAM: O-antigen ligase-related; KEGG: afr:AFE_2896 O-antigen polymerase family protein; O-antigen polymerase 279815 11041566 Acife_0260 Acidithiobacillus ferrivorans SS3 O-antigen polymerase YP_004782817.1 277755 D 743299 CDS YP_004782818.1 344198492 11041567 279853..281607 1 NC_015942.1 PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: afr:AFE_2895 peptidoglycan synthetase FtsI , putative; penicillin-binding protein transpeptidase 281607 11041567 Acife_0261 Acidithiobacillus ferrivorans SS3 penicillin-binding protein transpeptidase YP_004782818.1 279853 D 743299 CDS YP_004782819.1 344198493 11041568 281604..281915 1 NC_015942.1 KEGG: afe:Lferr_2514 hypothetical protein; hypothetical protein 281915 11041568 Acife_0262 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782819.1 281604 D 743299 CDS YP_004782820.1 344198494 11043945 281908..282231 1 NC_015942.1 KEGG: afe:Lferr_2513 hypothetical protein; hypothetical protein 282231 11043945 Acife_0263 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782820.1 281908 D 743299 CDS YP_004782821.1 344198495 11041569 complement(282228..284099) 1 NC_015942.1 KEGG: afr:AFE_2893 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 284099 11041569 Acife_0264 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004782821.1 282228 R 743299 CDS YP_004782822.1 344198496 11043946 complement(284198..284548) 1 NC_015942.1 KEGG: afr:AFE_2891 hypothetical protein; hypothetical protein 284548 11043946 Acife_0265 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782822.1 284198 R 743299 CDS YP_004782823.1 344198497 11043947 284727..285632 1 NC_015942.1 KEGG: afr:AFE_2882 uracil-DNA glycosylase family 4 protein; TIGRFAM: Phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase-like; phage SPO1 DNA polymerase-like protein 285632 11043947 Acife_0266 Acidithiobacillus ferrivorans SS3 phage SPO1 DNA polymerase-like protein YP_004782823.1 284727 D 743299 CDS YP_004782824.1 344198498 11041570 285712..286413 1 NC_015942.1 PFAM: Lipase, GDSL; KEGG: bsa:Bacsa_0892 alpha-L-fucosidase; G-D-S-L family lipolytic protein 286413 11041570 Acife_0267 Acidithiobacillus ferrivorans SS3 G-D-S-L family lipolytic protein YP_004782824.1 285712 D 743299 CDS YP_004782825.1 344198499 11043948 complement(286679..287260) 1 NC_015942.1 hypothetical protein 287260 11043948 Acife_0269 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782825.1 286679 R 743299 CDS YP_004782826.1 344198500 11043949 complement(287290..288246) 1 NC_015942.1 PFAM: Glycoside hydrolase, family 24; KEGG: xbo:XBJ1_0278 putative rhs accessory genetic element; glycoside hydrolase family protein 288246 11043949 Acife_0270 Acidithiobacillus ferrivorans SS3 glycoside hydrolase family protein YP_004782826.1 287290 R 743299 CDS YP_004782827.1 344198501 11041572 complement(288263..289183) 1 NC_015942.1 PFAM: TadE-like; KEGG: reh:H16_A0987 flp pilus assembly protein TadG; TadE family protein 289183 11041572 Acife_0271 Acidithiobacillus ferrivorans SS3 TadE family protein YP_004782827.1 288263 R 743299 CDS YP_004782828.1 344198502 11043950 complement(289173..290888) 1 NC_015942.1 PFAM: Type II secretion system protein E; KEGG: hna:Hneap_2309 FHA domain containing protein; type II secretion system protein E 290888 11043950 Acife_0272 Acidithiobacillus ferrivorans SS3 type II secretion system protein E YP_004782828.1 289173 R 743299 CDS YP_004782829.1 344198503 11041573 complement(290900..292255) 1 NC_015942.1 PFAM: Type II/III secretion system; KEGG: hna:Hneap_2310 type II and III secretion system protein; type II and III secretion system protein 292255 11041573 Acife_0273 Acidithiobacillus ferrivorans SS3 type II and III secretion system protein YP_004782829.1 290900 R 743299 CDS YP_004782830.1 344198504 11041574 complement(292272..293333) 1 NC_015942.1 TIGRFAM: Pilus assembly, Flp-type CpaB; KEGG: bph:Bphy_4344 Flp pilus assembly protein CpaB; Flp pilus assembly protein CpaB 293333 11041574 Acife_0274 Acidithiobacillus ferrivorans SS3 Flp pilus assembly protein CpaB YP_004782830.1 292272 R 743299 CDS YP_004782831.1 344198505 11041575 complement(293343..293510) 1 NC_015942.1 hypothetical protein 293510 11041575 Acife_0275 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782831.1 293343 R 743299 CDS YP_004782832.1 344198506 11041576 complement(293522..294196) 1 NC_015942.1 KEGG: hna:Hneap_2313 hypothetical protein; hypothetical protein 294196 11041576 Acife_0276 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782832.1 293522 R 743299 CDS YP_004782833.1 344198507 11041577 complement(294197..294937) 1 NC_015942.1 KEGG: swd:Swoo_0753 hypothetical protein; hypothetical protein 294937 11041577 Acife_0277 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782833.1 294197 R 743299 CDS YP_004782834.1 344198508 11041578 complement(295018..295986) 1 NC_015942.1 hypothetical protein 295986 11041578 Acife_0278 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782834.1 295018 R 743299 CDS YP_004782835.1 344198509 11041579 complement(296003..297634) 1 NC_015942.1 KEGG: saz:Sama_0702 hypothetical protein; hypothetical protein 297634 11041579 Acife_0279 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782835.1 296003 R 743299 CDS YP_004782836.1 344198510 11041580 complement(297728..298006) 1 NC_015942.1 KEGG: swd:Swoo_0756 hypothetical protein; hypothetical protein 298006 11041580 Acife_0280 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782836.1 297728 R 743299 CDS YP_004782837.1 344198511 11041581 complement(298348..299565) 1 NC_015942.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: avi:Avi_7144 OmpA family protein; OmpA/MotB domain-containing protein 299565 11041581 Acife_0281 Acidithiobacillus ferrivorans SS3 OmpA/MotB domain-containing protein YP_004782837.1 298348 R 743299 CDS YP_004782838.1 344198512 11041582 complement(299571..300260) 1 NC_015942.1 PFAM: Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; regulatory protein LuxR 300260 11041582 Acife_0282 Acidithiobacillus ferrivorans SS3 regulatory protein LuxR YP_004782838.1 299571 R 743299 CDS YP_004782839.1 344198513 11041583 300599..301450 1 NC_015942.1 PFAM: Type II secretion system F domain; KEGG: hna:Hneap_2308 type II secretion system F domain protein; type II secretion system F domain-containing protein 301450 11041583 Acife_0283 Acidithiobacillus ferrivorans SS3 type II secretion system F domain-containing protein YP_004782839.1 300599 D 743299 CDS YP_004782840.1 344198514 11041584 301447..302328 1 NC_015942.1 PFAM: Type II secretion system F domain; KEGG: reh:H16_A0985 flp pilus assembly protein TadC; type II secretion system F domain-containing protein 302328 11041584 Acife_0284 Acidithiobacillus ferrivorans SS3 type II secretion system F domain-containing protein YP_004782840.1 301447 D 743299 CDS YP_004782841.1 344198515 11041585 302325..302675 1 NC_015942.1 PFAM: Protein of unknown function DUF192; KEGG: afr:AFE_2872 hypothetical protein; hypothetical protein 302675 11041585 Acife_0285 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782841.1 302325 D 743299 CDS YP_004782842.1 344198516 11041586 302736..302984 1 NC_015942.1 KEGG: afr:AFE_0414 prevent host death protein; prevent host death protein 302984 11041586 Acife_0286 Acidithiobacillus ferrivorans SS3 prevent host death protein YP_004782842.1 302736 D 743299 CDS YP_004782843.1 344198517 11041587 302987..303367 1 NC_015942.1 KEGG: tmz:Tmz1t_1573 PIN domain protein; PIN domain-containing protein 303367 11041587 Acife_0287 Acidithiobacillus ferrivorans SS3 PIN domain-containing protein YP_004782843.1 302987 D 743299 CDS YP_004782844.1 344198518 11043951 303908..305284 1 NC_015942.1 TIGRFAM: Signal recognition particle, SRP; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; Signal recognition particle, SRP54 subunit, M-domain; KEGG: afr:AFE_2856 signal recognition particle protein; SMART: ATPase, AAA+ type, core; signal recognition particle protein 305284 11043951 Acife_0289 Acidithiobacillus ferrivorans SS3 signal recognition particle protein YP_004782844.1 303908 D 743299 CDS YP_004782845.1 344198519 11043952 305355..305615 1 NC_015942.1 TIGRFAM: Ribosomal protein S16; HAMAP: Ribosomal protein S16; KEGG: afr:AFE_2855 30S ribosomal protein S16; PFAM: Ribosomal protein S16; 30S ribosomal protein S16 305615 11043952 Acife_0290 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S16 YP_004782845.1 305355 D 743299 CDS YP_004782846.1 344198520 11041589 305602..306114 1 NC_015942.1 PFAM: RimM protein; PRC-barrel; manually curated; TIGRFAM: 16S rRNA processing protein RimM; KEGG: afr:AFE_2854 16S rRNA processing protein RimM; HAMAP: 16S rRNA processing protein RimM; ribosome maturation factor rimM 306114 11041589 Acife_0291 Acidithiobacillus ferrivorans SS3 ribosome maturation factor rimM YP_004782846.1 305602 D 743299 CDS YP_004782847.1 344198521 11041590 306114..306857 1 NC_015942.1 TIGRFAM: tRNA (guanine-N1-)-methyltransferase, bacteria; HAMAP: tRNA (guanine-N1-)-methyltransferase, bacteria; KEGG: afr:AFE_2853 tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N(1)-)-methyltransferase 306857 11041590 Acife_0292 Acidithiobacillus ferrivorans SS3 tRNA (guanine-N(1)-)-methyltransferase YP_004782847.1 306114 D 743299 CDS YP_004782848.1 344198522 11041591 306879..307223 1 NC_015942.1 TIGRFAM: Ribosomal protein L19; HAMAP: Ribosomal protein L19; KEGG: afr:AFE_2852 ribosomal protein L19; PFAM: Ribosomal protein L19; 50S ribosomal protein L19 307223 11041591 Acife_0293 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L19 YP_004782848.1 306879 D 743299 CDS YP_004782849.1 344198523 11041592 307248..308483 1 NC_015942.1 KEGG: afe:Lferr_2472 hypothetical protein; hypothetical protein 308483 11041592 Acife_0294 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782849.1 307248 D 743299 CDS YP_004782850.1 344198524 11043953 308530..309444 1 NC_015942.1 TIGRFAM: Tyrosine recombinase XerD; HAMAP: Tyrosine recombinase xerD; KEGG: afr:AFE_2850 tyrosine recombinase XerD; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; Tyrosine recombinase xerD 309444 11043953 Acife_0295 Acidithiobacillus ferrivorans SS3 Tyrosine recombinase xerD YP_004782850.1 308530 D 743299 CDS YP_004782851.1 344198525 11041593 complement(309571..311088) 1 NC_015942.1 TIGRFAM: Peptidase S1C, Do; PFAM: PDZ/DHR/GLGF; Peptidase S1/S6, chymotrypsin/Hap; KEGG: afr:AFE_2849 serine protease, DO/DeqQ family; SMART: PDZ/DHR/GLGF; protease Do 311088 11041593 Acife_0296 Acidithiobacillus ferrivorans SS3 protease Do YP_004782851.1 309571 R 743299 CDS YP_004782852.1 344198526 11041594 complement(311228..312097) 1 NC_015942.1 KEGG: afr:AFE_2848 thioredoxin, putative; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; thioredoxin 312097 11041594 Acife_0297 Acidithiobacillus ferrivorans SS3 thioredoxin YP_004782852.1 311228 R 743299 CDS YP_004782853.1 344198527 11043954 complement(312212..312766) 1 NC_015942.1 KEGG: afe:Lferr_2468 hypothetical protein; hypothetical protein 312766 11043954 Acife_0298 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782853.1 312212 R 743299 CDS YP_004782854.1 344198528 11041595 complement(312833..315709) 1 NC_015942.1 TIGRFAM: Excinuclease ABC, A subunit; HAMAP: UvrABC system protein A; KEGG: afr:AFE_2847 excinuclease ABC, A subunit; PFAM: ABC transporter-like; UvrABC system protein A 315709 11041595 Acife_0299 Acidithiobacillus ferrivorans SS3 UvrABC system protein A YP_004782854.1 312833 R 743299 CDS YP_004782855.1 344198529 11041596 315724..316197 1 NC_015942.1 KEGG: afr:AFE_2845 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding; single-strand binding protein 316197 11041596 Acife_0300 Acidithiobacillus ferrivorans SS3 single-strand binding protein YP_004782855.1 315724 D 743299 CDS YP_004782856.1 344198530 11041597 316595..318214 1 NC_015942.1 PFAM: DNA methylase, adenine-specific; KEGG: geb:GM18_2872 adenine-specific DNA-methyltransferase; N-6 DNA methylase 318214 11041597 Acife_0301 Acidithiobacillus ferrivorans SS3 N-6 DNA methylase YP_004782856.1 316595 D 743299 CDS YP_004782857.1 344198531 11041598 318214..319296 1 NC_015942.1 PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: cph:Cpha266_1710 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 319296 11041598 Acife_0302 Acidithiobacillus ferrivorans SS3 restriction modification system DNA specificity domain-containing protein YP_004782857.1 318214 D 743299 CDS YP_004782858.1 344198532 11043955 319289..319897 1 NC_015942.1 KEGG: vvy:VV1821 hypothetical protein; hypothetical protein 319897 11043955 Acife_0303 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782858.1 319289 D 743299 CDS YP_004782859.1 344198533 11041599 320027..320635 1 NC_015942.1 KEGG: pca:Pcar_0280 hypothetical protein; hypothetical protein 320635 11041599 Acife_0304 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782859.1 320027 D 743299 CDS YP_004782860.1 344198534 11041600 320635..321627 1 NC_015942.1 PFAM: Protein of unknown function DUF1814; KEGG: pca:Pcar_0281 hypothetical protein; hypothetical protein 321627 11041600 Acife_0305 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782860.1 320635 D 743299 CDS YP_004782861.1 344198535 11041601 321608..324787 1 NC_015942.1 TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: geb:GM18_2869 type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicase, N-terminal; HsdR family type I site-specific deoxyribonuclease 324787 11041601 Acife_0306 Acidithiobacillus ferrivorans SS3 HsdR family type I site-specific deoxyribonuclease YP_004782861.1 321608 D 743299 CDS YP_004782862.1 344198536 11041602 complement(324963..325151) 1 NC_015942.1 KEGG: afr:AFE_2844 hypothetical protein; hypothetical protein 325151 11041602 Acife_0307 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782862.1 324963 R 743299 CDS YP_004782863.1 344198537 11041603 325321..326613 1 NC_015942.1 PFAM: Protein of unknown function DUF445, transmembrane; KEGG: afr:AFE_2843 hypothetical protein; hypothetical protein 326613 11041603 Acife_0308 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782863.1 325321 D 743299 CDS YP_004782864.1 344198538 11043956 complement(326619..327467) 1 NC_015942.1 TIGRFAM: Glutamate racemase; HAMAP: Glutamate racemase; KEGG: afr:AFE_2842 glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase 327467 11043956 Acife_0309 Acidithiobacillus ferrivorans SS3 glutamate racemase YP_004782864.1 326619 R 743299 CDS YP_004782865.1 344198539 11043957 complement(327467..328414) 1 NC_015942.1 PFAM: ROK; KEGG: afr:AFE_2841 ROK family protein; ROK family protein 328414 11043957 Acife_0310 Acidithiobacillus ferrivorans SS3 ROK family protein YP_004782865.1 327467 R 743299 CDS YP_004782866.1 344198540 11041604 complement(328407..330425) 1 NC_015942.1 PFAM: Alpha-amylase/4-alpha-glucanotransferase, prokaryotic; Domain of unknown function DUF1925; Glycoside hydrolase, family 57, core; KEGG: afr:AFE_2840 glycosyl hydrolase, family 57; hypothetical protein 330425 11041604 Acife_0311 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782866.1 328407 R 743299 CDS YP_004782867.1 344198541 11043958 complement(330426..332129) 1 NC_015942.1 PFAM: Glycoside hydrolase, family 57, core; KEGG: afr:AFE_2839 glycosyl hydrolase, family 57; glycoside hydrolase family protein 332129 11043958 Acife_0312 Acidithiobacillus ferrivorans SS3 glycoside hydrolase family protein YP_004782867.1 330426 R 743299 CDS YP_004782868.1 344198542 11041605 complement(332134..333441) 1 NC_015942.1 TIGRFAM: Glucose-1-phosphate adenylyltransferase; HAMAP: Glucose-1-phosphate adenylyltransferase; KEGG: afr:AFE_2838 glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate adenylyltransferase 333441 11041605 Acife_0313 Acidithiobacillus ferrivorans SS3 glucose-1-phosphate adenylyltransferase YP_004782868.1 332134 R 743299 CDS YP_004782869.1 344198543 11041606 333681..335888 1 NC_015942.1 SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM: 1,4-alpha-glucan branching enzyme, core region; KEGG: afe:Lferr_2458 1,4-alpha-glucan branching protein; HAMAP: 1,4-alpha-glucan branching enzyme, core region; PFAM: Alpha-amylase, C-terminal all beta; Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; 1,4-alpha-glucan-branching protein 335888 11041606 Acife_0314 Acidithiobacillus ferrivorans SS3 1,4-alpha-glucan-branching protein YP_004782869.1 333681 D 743299 CDS YP_004782870.1 344198544 11041607 335885..336364 1 NC_015942.1 KEGG: afr:AFE_2835 hypothetical protein; hypothetical protein 336364 11041607 Acife_0315 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782870.1 335885 D 743299 CDS YP_004782871.1 344198545 11043959 336340..337269 1 NC_015942.1 KEGG: afr:AFE_2834 SPFH/band 7 domain protein; PFAM: Band 7 protein; SMART: Band 7 protein; hypothetical protein 337269 11043959 Acife_0316 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782871.1 336340 D 743299 CDS YP_004782872.1 344198546 11041608 complement(337344..338054) 1 NC_015942.1 TIGRFAM: 6-phosphogluconolactonase; KEGG: afr:AFE_2833 6-phosphogluconolactonase; 6-phosphogluconolactonase 338054 11041608 Acife_0317 Acidithiobacillus ferrivorans SS3 6-phosphogluconolactonase YP_004782872.1 337344 R 743299 CDS YP_004782873.1 344198547 11041609 338140..339078 1 NC_015942.1 KEGG: afr:AFE_2832 cysteine synthase B; TIGRFAM: Cysteine synthase K/M; Cysteine synthase B; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; cysteine synthase 339078 11041609 Acife_0318 Acidithiobacillus ferrivorans SS3 cysteine synthase YP_004782873.1 338140 D 743299 CDS YP_004782874.1 344198548 11041610 339086..341146 1 NC_015942.1 KEGG: afe:Lferr_2453 hypothetical protein; hypothetical protein 341146 11041610 Acife_0319 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782874.1 339086 D 743299 CDS YP_004782875.1 344198549 11041611 341151..341834 1 NC_015942.1 KEGG: afe:Lferr_2452 hypothetical protein; hypothetical protein 341834 11041611 Acife_0320 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782875.1 341151 D 743299 CDS YP_004782876.1 344198550 11041612 341819..342652 1 NC_015942.1 PFAM: 3'-5' exonuclease, PolB-like; KEGG: afe:Lferr_2451 hypothetical protein; 3'-5' exonuclease, PolB-like protein 342652 11041612 Acife_0321 Acidithiobacillus ferrivorans SS3 3'-5' exonuclease, PolB-like protein YP_004782876.1 341819 D 743299 CDS YP_004782877.1 344198551 11041613 342627..343949 1 NC_015942.1 TIGRFAM: 23S rRNA methyltransferase/RumA; HAMAP: 23S rRNA (uracil-5-)-methyltransferase rumA; KEGG: afr:AFE_2828 23S rRNA (uracil-5-)-methyltransferase; PFAM: Methyltransferase type 11; Deoxyribonuclease/rho motif-related TRAM; 23S rRNA (uracil-5-)-methyltransferase RumA 343949 11041613 Acife_0322 Acidithiobacillus ferrivorans SS3 23S rRNA (uracil-5-)-methyltransferase RumA YP_004782877.1 342627 D 743299 CDS YP_004782878.1 344198552 11043960 343951..344469 1 NC_015942.1 PFAM: YkuD domain; KEGG: afr:AFE_2827 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 344469 11043960 Acife_0323 Acidithiobacillus ferrivorans SS3 ErfK/YbiS/YcfS/YnhG family protein YP_004782878.1 343951 D 743299 CDS YP_004782879.1 344198553 11041614 344470..346599 1 NC_015942.1 KEGG: afr:AFE_2826 hypothetical protein; hypothetical protein 346599 11041614 Acife_0324 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782879.1 344470 D 743299 CDS YP_004782880.1 344198554 11041615 346583..347647 1 NC_015942.1 PFAM: Glycoside hydrolase, family 3, N-terminal; KEGG: afr:AFE_2825 beta-hexosaminidase; glycoside hydrolase family protein 347647 11041615 Acife_0325 Acidithiobacillus ferrivorans SS3 glycoside hydrolase family protein YP_004782880.1 346583 D 743299 CDS YP_004782881.1 344198555 11041616 347772..348176 1 NC_015942.1 TIGRFAM: Ribosomal protein S6; HAMAP: Ribosomal protein S6, bacterial-like; KEGG: afr:AFE_2824 30S ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; 30S ribosomal protein S6 348176 11041616 Acife_0326 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S6 YP_004782881.1 347772 D 743299 CDS YP_004782882.1 344198556 11041617 348192..348470 1 NC_015942.1 TIGRFAM: Ribosomal protein S18; HAMAP: 30S ribosomal protein S18; KEGG: afr:AFE_2823 ribosomal protein S18; PFAM: Ribosomal protein S18; 30S ribosomal protein S18 348470 11041617 Acife_0327 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S18 YP_004782882.1 348192 D 743299 CDS YP_004782883.1 344198557 11041618 348486..349403 1 NC_015942.1 PFAM: Protein of unknown function DUF2232, membrane; KEGG: afe:Lferr_2444 hypothetical protein; hypothetical protein 349403 11041618 Acife_0328 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782883.1 348486 D 743299 CDS YP_004782884.1 344198558 11041619 349441..349887 1 NC_015942.1 TIGRFAM: Ribosomal protein L9, bacteria/chloroplast; HAMAP: Ribosomal protein L9, bacteria/chloroplast; KEGG: afr:AFE_2820 50S ribosomal protein L9; PFAM: Ribosomal protein L9, N-terminal; Ribosomal protein L9, C-terminal; 50S ribosomal protein L9 349887 11041619 Acife_0329 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L9 YP_004782884.1 349441 D 743299 CDS YP_004782885.1 344198559 11043961 349913..351286 1 NC_015942.1 TIGRFAM: DNA helicase, DnaB type; PFAM: DNA helicase, DnaB-like, C-terminal; DNA helicase, DnaB-like, N-terminal; KEGG: afr:AFE_2819 replicative DNA helicase; SMART: ATPase, AAA+ type, core; replicative DNA helicase 351286 11043961 Acife_0330 Acidithiobacillus ferrivorans SS3 replicative DNA helicase YP_004782885.1 349913 D 743299 CDS YP_004782886.1 344198560 11043962 351349..352443 1 NC_015942.1 TIGRFAM: Alanine racemase; HAMAP: Alanine racemase; KEGG: afr:AFE_2818 alanine racemase; PFAM: Alanine racemase, N-terminal; Alanine racemase, C-terminal; alanine racemase 352443 11043962 Acife_0331 Acidithiobacillus ferrivorans SS3 alanine racemase YP_004782886.1 351349 D 743299 CDS YP_004782887.1 344198561 11041620 352440..353798 1 NC_015942.1 KEGG: afr:AFE_2817 DNA repair protein RadA; TIGRFAM: DNA repair protein RadA; SMART: ATPase, AAA+ type, core; DNA repair protein RadA 353798 11041620 Acife_0332 Acidithiobacillus ferrivorans SS3 DNA repair protein RadA YP_004782887.1 352440 D 743299 CDS YP_004782888.1 344198562 11041621 353970..354407 1 NC_015942.1 KEGG: afr:AFE_2816 hypothetical protein; hypothetical protein 354407 11041621 Acife_0333 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782888.1 353970 D 743299 CDS YP_004782889.1 344198563 11041622 354571..355914 1 NC_015942.1 PFAM: Peptidase M24, structural domain; Peptidase M24B, X-Pro dipeptidase/aminopeptidase P N-terminal; KEGG: afr:AFE_2815 Xaa-Pro aminopeptidase; peptidase M24 355914 11041622 Acife_0334 Acidithiobacillus ferrivorans SS3 peptidase M24 YP_004782889.1 354571 D 743299 CDS YP_004782890.1 344198564 11041623 complement(355944..356516) 1 NC_015942.1 KEGG: afe:Lferr_2437 hypothetical protein; hypothetical protein 356516 11041623 Acife_0335 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782890.1 355944 R 743299 CDS YP_004782891.1 344198565 11043963 356920..357225 1 NC_015942.1 KEGG: afr:AFE_2811 lipoprotein, putative; lipoprotein 357225 11043963 Acife_0336 Acidithiobacillus ferrivorans SS3 lipoprotein YP_004782891.1 356920 D 743299 CDS YP_004782892.1 344198566 11041624 complement(357347..359791) 1 NC_015942.1 KEGG: afr:AFE_2053 putative phosphoketolase; HAMAP: phosphoketolase; PFAM: Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, N-terminal; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase; Xylulose 5-phosphate/Fructose 6-phosphate phosphoketolase, C-terminal; phosphoketolase 359791 11041624 Acife_0337 Acidithiobacillus ferrivorans SS3 phosphoketolase YP_004782892.1 357347 R 743299 CDS YP_004782893.1 344198567 11041625 complement(359892..360224) 1 NC_015942.1 manually curated; KEGG: afe:Lferr_0218 hypothetical protein; hypothetical protein 360224 11041625 Acife_0338 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782893.1 359892 R 743299 CDS YP_004782894.1 344198568 11041626 complement(360262..360681) 1 NC_015942.1 PFAM: Protein of unknown function DUF2078, membrane; KEGG: afe:Lferr_0219 hypothetical protein; hypothetical protein 360681 11041626 Acife_0339 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782894.1 360262 R 743299 CDS YP_004782895.1 344198569 11041628 361379..361708 1 NC_015942.1 KEGG: afr:AFE_1709 ISAfe4, tranposase orf1; ISAfe4, tranposase orf1 361708 11041628 Acife_0341 Acidithiobacillus ferrivorans SS3 ISAfe4, tranposase orf1 YP_004782895.1 361379 D 743299 CDS YP_004782896.1 344198570 11041629 361699..361989 1 NC_015942.1 PFAM: Transposase (putative), IS66 Orf2 like; KEGG: afr:AFE_2938 ISAfe4, transposase orf2; IS66 Orf2 family protein 361989 11041629 Acife_0342 Acidithiobacillus ferrivorans SS3 IS66 Orf2 family protein YP_004782896.1 361699 D 743299 CDS YP_004782897.1 344198571 11041630 complement(362190..362819) 1 NC_015942.1 PFAM: Integrase, catalytic core, phage; KEGG: gca:Galf_2491 integrase family protein; integrase family protein 362819 11041630 Acife_0343 Acidithiobacillus ferrivorans SS3 integrase family protein YP_004782897.1 362190 R 743299 CDS YP_004782898.1 344198572 11041631 363060..363344 1 NC_015942.1 hypothetical protein 363344 11041631 Acife_0344 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782898.1 363060 D 743299 CDS YP_004782899.1 344198573 11043964 363417..363956 1 NC_015942.1 KEGG: tde:TDE0384 hypothetical protein; hypothetical protein 363956 11043964 Acife_0345 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782899.1 363417 D 743299 CDS YP_004782900.1 344198574 11041632 363989..364432 1 NC_015942.1 KEGG: bac:BamMC406_6709 hypothetical protein; hypothetical protein 364432 11041632 Acife_0346 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782900.1 363989 D 743299 CDS YP_004782901.1 344198575 11041633 complement(364715..365119) 1 NC_015942.1 hypothetical protein 365119 11041633 Acife_0347 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782901.1 364715 R 743299 CDS YP_004782902.1 344198576 11041634 complement(365112..365372) 1 NC_015942.1 manually curated; KEGG: hypothetical protein; hypothetical protein 365372 11041634 Acife_0348 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782902.1 365112 R 743299 CDS YP_004782903.1 344198577 11041635 complement(365632..366360) 1 NC_015942.1 hypothetical protein 366360 11041635 Acife_0349 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782903.1 365632 R 743299 CDS YP_004782904.1 344198578 11043965 complement(366436..366927) 1 NC_015942.1 hypothetical protein 366927 11043965 Acife_0350 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782904.1 366436 R 743299 CDS YP_004782905.1 344198579 11043966 complement(367333..367731) 1 NC_015942.1 PFAM: Integrase, N-terminal SAM-like, phage; KEGG: pol:Bpro_4806 phage integrase; integrase domain-containing protein SAM domain-containing protein 367731 11043966 Acife_0351 Acidithiobacillus ferrivorans SS3 integrase domain-containing protein SAM domain-containing protein YP_004782905.1 367333 R 743299 CDS YP_004782906.1 344198580 11041636 complement(368096..368602) 1 NC_015942.1 hypothetical protein 368602 11041636 Acife_0352 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782906.1 368096 R 743299 CDS YP_004782907.1 344198581 11041637 complement(368599..369690) 1 NC_015942.1 PFAM: Protein of unknown function DUF262; KEGG: dly:Dehly_0806 hypothetical protein; hypothetical protein 369690 11041637 Acife_0353 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782907.1 368599 R 743299 CDS YP_004782908.1 344198582 11041638 complement(370045..370770) 1 NC_015942.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Protein of unknown function DUF2470; KEGG: tin:Tint_2978 pyridoxamine 5'-phosphate oxidase-related FMN-binding protein; FMN-binding pyridoxamine 5'-phosphate oxidase-like protein 370770 11041638 Acife_0354 Acidithiobacillus ferrivorans SS3 FMN-binding pyridoxamine 5'-phosphate oxidase-like protein YP_004782908.1 370045 R 743299 CDS YP_004782909.1 344198583 11041639 complement(371356..371919) 1 NC_015942.1 PFAM: Mechanosensitive ion channel MscS; KEGG: afr:AFE_1549 hypothetical protein; mechanosensitive ion channel MscS 371919 11041639 Acife_0355 Acidithiobacillus ferrivorans SS3 mechanosensitive ion channel MscS YP_004782909.1 371356 R 743299 CDS YP_004782910.1 344198584 11043968 372709..373437 1 NC_015942.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: tin:Tint_2798 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 373437 11043968 Acife_0357 Acidithiobacillus ferrivorans SS3 short-chain dehydrogenase/reductase SDR YP_004782910.1 372709 D 743299 CDS YP_004782911.1 344198585 11041640 373461..374198 1 NC_015942.1 KEGG: afr:AFE_1582 hypothetical protein; hypothetical protein 374198 11041640 Acife_0358 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782911.1 373461 D 743299 CDS YP_004782912.1 344198586 11043969 complement(374241..374750) 1 NC_015942.1 KEGG: afr:AFE_0905 integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 374750 11043969 Acife_0359 Acidithiobacillus ferrivorans SS3 histone family protein DNA-binding protein YP_004782912.1 374241 R 743299 CDS YP_004782913.1 344198587 11041641 complement(374851..375084) 1 NC_015942.1 hypothetical protein 375084 11041641 Acife_0360 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782913.1 374851 R 743299 CDS YP_004782914.1 344198588 11041643 375716..375988 1 NC_015942.1 hypothetical protein 375988 11041643 Acife_0362 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782914.1 375716 D 743299 CDS YP_004782915.1 344198589 11041644 375988..376677 1 NC_015942.1 KEGG: hypothetical protein; hypothetical protein 376677 11041644 Acife_0363 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782915.1 375988 D 743299 CDS YP_004782916.1 344198590 11043971 complement(377262..377657) 1 NC_015942.1 hypothetical protein 377657 11043971 Acife_0365 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782916.1 377262 R 743299 CDS YP_004782917.1 344198591 11041645 378645..383939 1 NC_015942.1 KEGG: gpb:HDN1F_07060 DEAD/DEAH box helicase; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Protein of unknown function DUF1998; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; DEAD/DEAH box helicase domain-containing protein 383939 11041645 Acife_0366 Acidithiobacillus ferrivorans SS3 DEAD/DEAH box helicase domain-containing protein YP_004782917.1 378645 D 743299 CDS YP_004782918.1 344198592 11041646 383936..386713 1 NC_015942.1 KEGG: gpb:HDN1F_07070 superfamily II DNA/RNA helicases, SNF2 family; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; helicase domain-containing protein 386713 11041646 Acife_0367 Acidithiobacillus ferrivorans SS3 helicase domain-containing protein YP_004782918.1 383936 D 743299 CDS YP_004782919.1 344198593 11041647 386753..386974 1 NC_015942.1 KEGG: afr:AFE_0085 prevent-host-death family protein; prevent-host-death family protein 386974 11041647 Acife_0368 Acidithiobacillus ferrivorans SS3 prevent-host-death family protein YP_004782919.1 386753 D 743299 CDS YP_004782920.1 344198594 11041648 386974..387387 1 NC_015942.1 KEGG: afr:AFE_0086 hypothetical protein; hypothetical protein 387387 11041648 Acife_0369 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782920.1 386974 D 743299 CDS YP_004782921.1 344198595 11043972 387384..391403 1 NC_015942.1 KEGG: gpb:HDN1F_07090 hypothetical protein; hypothetical protein 391403 11043972 Acife_0370 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782921.1 387384 D 743299 CDS YP_004782922.1 344198596 11041649 391400..391831 1 NC_015942.1 KEGG: mar:MAE_15010 hypothetical protein; hypothetical protein 391831 11041649 Acife_0371 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782922.1 391400 D 743299 CDS YP_004782923.1 344198597 11041650 391828..394590 1 NC_015942.1 KEGG: syn:sll1563 hypothetical protein; hypothetical protein 394590 11041650 Acife_0372 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782923.1 391828 D 743299 CDS YP_004782924.1 344198598 11041651 394604..395227 1 NC_015942.1 KEGG: nit:NAL212_1258 RNA ligase domain, REL/Rln2; RNA ligase domain, REL/Rln2 395227 11041651 Acife_0373 Acidithiobacillus ferrivorans SS3 RNA ligase domain, REL/Rln2 YP_004782924.1 394604 D 743299 CDS YP_004782925.1 344198599 11041652 395430..395705 1 NC_015942.1 PFAM: Plasmid maintenance system killer; KEGG: afr:AFE_0088 plasmid maintenance system killer protein; plasmid maintenance system killer 395705 11041652 Acife_0374 Acidithiobacillus ferrivorans SS3 plasmid maintenance system killer YP_004782925.1 395430 D 743299 CDS YP_004782926.1 344198600 11041653 395722..396039 1 NC_015942.1 TIGRFAM: Addiction module antidote protein, HigA; KEGG: afr:AFE_0089 DNA-binding protein, putative; XRE family transcriptional regulator 396039 11041653 Acife_0375 Acidithiobacillus ferrivorans SS3 XRE family transcriptional regulator YP_004782926.1 395722 D 743299 CDS YP_004782927.1 344198601 11041654 396074..396856 1 NC_015942.1 KEGG: nit:NAL212_1257 hypothetical protein; hypothetical protein 396856 11041654 Acife_0376 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782927.1 396074 D 743299 CDS YP_004782928.1 344198602 11041655 397325..397534 1 NC_015942.1 hypothetical protein 397534 11041655 Acife_0377 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782928.1 397325 D 743299 CDS YP_004782929.1 344198603 11043973 complement(397834..398730) 1 NC_015942.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: dde:Dde_1146 hypothetical protein; hypothetical protein 398730 11043973 Acife_0378 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782929.1 397834 R 743299 CDS YP_004782930.1 344198604 11043974 complement(398723..399313) 1 NC_015942.1 PFAM: DinB; KEGG: tin:Tint_2723 DinB family protein; DinB family protein 399313 11043974 Acife_0379 Acidithiobacillus ferrivorans SS3 DinB family protein YP_004782930.1 398723 R 743299 CDS YP_004782931.1 344198605 11041656 complement(399673..399882) 1 NC_015942.1 KEGG: afe:Lferr_0197 hypothetical protein; hypothetical protein 399882 11041656 Acife_0380 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782931.1 399673 R 743299 CDS YP_004782932.1 344198606 11041657 complement(399879..400292) 1 NC_015942.1 KEGG: afe:Lferr_0198 hypothetical protein; hypothetical protein 400292 11041657 Acife_0381 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782932.1 399879 R 743299 CDS YP_004782933.1 344198607 11041658 complement(400847..402043) 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sil:SPO3481 hypothetical protein; major facilitator superfamily protein 402043 11041658 Acife_0382 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004782933.1 400847 R 743299 CDS YP_004782934.1 344198608 11041659 complement(402117..402584) 1 NC_015942.1 PFAM: Protein of unknown function DUF1348; KEGG: aba:Acid345_2217 hypothetical protein; hypothetical protein 402584 11041659 Acife_0383 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782934.1 402117 R 743299 CDS YP_004782935.1 344198609 11043975 402782..403288 1 NC_015942.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pol:Bpro_2654 TetR family transcriptional regulator; TetR family transcriptional regulator 403288 11043975 Acife_0384 Acidithiobacillus ferrivorans SS3 TetR family transcriptional regulator YP_004782935.1 402782 D 743299 CDS YP_004782936.1 344198610 11041660 complement(403611..405089) 1 NC_015942.1 KEGG: afr:AFE_2799 transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II; PFAM: AlkA, N-terminal; Ada DNA repair, metal-binding; Helix-turn-helix, AraC type; HhH-GPD domain; SMART: Helix-turn-helix, AraC domain; HhH-GPD domain; AraC family transcriptional regulator 405089 11041660 Acife_0386 Acidithiobacillus ferrivorans SS3 AraC family transcriptional regulator YP_004782936.1 403611 R 743299 CDS YP_004782937.1 344198611 11041661 405265..405402 1 NC_015942.1 hypothetical protein 405402 11041661 Acife_0387 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782937.1 405265 D 743299 CDS YP_004782938.1 344198612 11041663 complement(405591..406004) 1 NC_015942.1 KEGG: afr:AFE_2797 hypothetical protein; hypothetical protein 406004 11041663 Acife_0389 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782938.1 405591 R 743299 CDS YP_004782939.1 344198613 11043977 406114..406794 1 NC_015942.1 SMART: HTH transcriptional regulator, ArsR; KEGG: afr:AFE_2796 transcriptional regulator, ArsR family; regulatory protein ArsR 406794 11043977 Acife_0390 Acidithiobacillus ferrivorans SS3 regulatory protein ArsR YP_004782939.1 406114 D 743299 CDS YP_004782940.1 344198614 11043978 406983..407600 1 NC_015942.1 manually curated; KEGG: bbt:BBta_p0031 hypothetical protein; hypothetical protein 407600 11043978 Acife_0391 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782940.1 406983 D 743299 CDS YP_004782941.1 344198615 11041664 complement(407672..408373) 1 NC_015942.1 KEGG: afe:Lferr_0254 TIR (toll-interleukin 1-resistance) domain-containing protein-like protein; hypothetical protein 408373 11041664 Acife_0392 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782941.1 407672 R 743299 CDS YP_004782942.1 344198616 11041665 complement(408569..408904) 1 NC_015942.1 hypothetical protein 408904 11041665 Acife_0393 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782942.1 408569 R 743299 CDS YP_004782943.1 344198617 11041666 complement(408971..409969) 1 NC_015942.1 hypothetical protein 409969 11041666 Acife_0394 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782943.1 408971 R 743299 CDS YP_004782944.1 344198618 11041667 410056..410343 1 NC_015942.1 PFAM: Transposase IS3/IS911; KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 410343 11041667 Acife_0395 Acidithiobacillus ferrivorans SS3 transposase IS3/IS911 family protein YP_004782944.1 410056 D 743299 CDS YP_004782945.1 344198619 11041668 410340..411224 1 NC_015942.1 KEGG: pna:Pnap_0429 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core; integrase catalytic subunit 411224 11041668 Acife_0396 Acidithiobacillus ferrivorans SS3 integrase catalytic subunit YP_004782945.1 410340 D 743299 CDS YP_004782946.1 344198620 11041669 complement(411440..411589) 1 NC_015942.1 hypothetical protein 411589 11041669 Acife_0397 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782946.1 411440 R 743299 CDS YP_004782947.1 344198621 11041670 412124..413035 1 NC_015942.1 PFAM: Restriction endonuclease, type IV-like, Mrr; DNA topoisomerase, type IA, zn finger; KEGG: afr:AFE_2769 restriction endonuclease, putative; restriction endonuclease 413035 11041670 Acife_0398 Acidithiobacillus ferrivorans SS3 restriction endonuclease YP_004782947.1 412124 D 743299 CDS YP_004782948.1 344198622 11041671 413236..413364 1 NC_015942.1 hypothetical protein 413364 11041671 Acife_0400 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782948.1 413236 D 743299 CDS YP_004782949.1 344198623 11041672 complement(413373..413996) 1 NC_015942.1 KEGG: slt:Slit_1749 hypothetical protein; hypothetical protein 413996 11041672 Acife_0401 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782949.1 413373 R 743299 CDS YP_004782950.1 344198624 11041673 complement(414671..415765) 1 NC_015942.1 PFAM: Integrase, catalytic core, phage; KEGG: ppw:PputW619_3971 integrase family protein; integrase family protein 415765 11041673 Acife_0402 Acidithiobacillus ferrivorans SS3 integrase family protein YP_004782950.1 414671 R 743299 CDS YP_004782951.1 344198625 11041674 complement(415994..417001) 1 NC_015942.1 PFAM: Integrase, catalytic core, phage; KEGG: nhl:Nhal_0956 integrase family protein; integrase family protein 417001 11041674 Acife_0403 Acidithiobacillus ferrivorans SS3 integrase family protein YP_004782951.1 415994 R 743299 CDS YP_004782952.1 344198626 11043980 complement(416994..417224) 1 NC_015942.1 hypothetical protein 417224 11043980 Acife_0404 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782952.1 416994 R 743299 CDS YP_004782953.1 344198627 11043981 complement(417377..417481) 1 NC_015942.1 hypothetical protein 417481 11043981 Acife_0405 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782953.1 417377 R 743299 CDS YP_004782954.1 344198628 11041675 complement(417474..417743) 1 NC_015942.1 KEGG: afr:AFE_0865 hypothetical protein; hypothetical protein 417743 11041675 Acife_0406 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782954.1 417474 R 743299 CDS YP_004782955.1 344198629 11041676 complement(417797..419284) 1 NC_015942.1 hypothetical protein 419284 11041676 Acife_0407 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782955.1 417797 R 743299 CDS YP_004782956.1 344198630 11043982 complement(419284..419469) 1 NC_015942.1 hypothetical protein 419469 11043982 Acife_0408 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782956.1 419284 R 743299 CDS YP_004782957.1 344198631 11041677 complement(419676..419903) 1 NC_015942.1 hypothetical protein 419903 11041677 Acife_0410 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782957.1 419676 R 743299 CDS YP_004782958.1 344198632 11041678 complement(420046..421002) 1 NC_015942.1 KEGG: vpe:Varpa_2758 hypothetical protein; hypothetical protein 421002 11041678 Acife_0411 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782958.1 420046 R 743299 CDS YP_004782959.1 344198633 11041679 complement(421448..421876) 1 NC_015942.1 KEGG: axy:AXYL_02046 helix-turn-helix family protein 5; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 421876 11041679 Acife_0412 Acidithiobacillus ferrivorans SS3 helix-turn-helix domain-containing protein YP_004782959.1 421448 R 743299 CDS YP_004782960.1 344198634 11043984 complement(422545..422958) 1 NC_015942.1 KEGG: app:CAP2UW1_0226 XRE family transcriptional regulator; TIGRFAM: putative zinc finger/helix-turn-helix protein, YgiT family; SMART: Helix-turn-helix type 3; putative zinc finger/helix-turn-helix protein, YgiT family 422958 11043984 Acife_0414 Acidithiobacillus ferrivorans SS3 putative zinc finger/helix-turn-helix protein, YgiT family YP_004782960.1 422545 R 743299 CDS YP_004782961.1 344198635 11041681 complement(422960..423262) 1 NC_015942.1 KEGG: app:CAP2UW1_0225 hypothetical protein; hypothetical protein 423262 11041681 Acife_0415 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782961.1 422960 R 743299 CDS YP_004782962.1 344198636 11041682 423394..423825 1 NC_015942.1 hypothetical protein 423825 11041682 Acife_0416 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782962.1 423394 D 743299 CDS YP_004782963.1 344198637 11041683 423830..424123 1 NC_015942.1 PFAM: Protein of unknown function DUF1376; hypothetical protein 424123 11041683 Acife_0417 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782963.1 423830 D 743299 CDS YP_004782964.1 344198638 11041684 424110..424331 1 NC_015942.1 hypothetical protein 424331 11041684 Acife_0418 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782964.1 424110 D 743299 CDS YP_004782965.1 344198639 11043985 424334..425332 1 NC_015942.1 KEGG: brh:RBRH_01223 replication protein 15; hypothetical protein 425332 11043985 Acife_0419 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782965.1 424334 D 743299 CDS YP_004782966.1 344198640 11041685 425344..426183 1 NC_015942.1 KEGG: afr:AFE_1566 DNA replication protein DnaC, putative; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 426183 11041685 Acife_0420 Acidithiobacillus ferrivorans SS3 IstB domain-containing protein ATP-binding protein YP_004782966.1 425344 D 743299 CDS YP_004782967.1 344198641 11041686 426180..426650 1 NC_015942.1 hypothetical protein 426650 11041686 Acife_0421 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782967.1 426180 D 743299 CDS YP_004782968.1 344198642 11041687 426654..427121 1 NC_015942.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: gox:GOX2634 conjugal transfer protein TrbN; lytic transglycosylase 427121 11041687 Acife_0422 Acidithiobacillus ferrivorans SS3 lytic transglycosylase YP_004782968.1 426654 D 743299 CDS YP_004782969.1 344198643 11041688 427118..427741 1 NC_015942.1 KEGG: lpa:lpa_00690 IcmL (DotI); IcmL (DotI) 427741 11041688 Acife_0423 Acidithiobacillus ferrivorans SS3 IcmL (DotI) YP_004782969.1 427118 D 743299 CDS YP_004782970.1 344198644 11041689 427754..428854 1 NC_015942.1 KEGG: cbd:CBUD_0370 IcmK; hypothetical protein 428854 11041689 Acife_0424 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782970.1 427754 D 743299 CDS YP_004782971.1 344198645 11041690 428844..430070 1 NC_015942.1 PFAM: Bacterial conjugation TrbI-like protein; KEGG: lpn:lpg0451 IcmE (DotG); conjugation TrbI family protein 430070 11041690 Acife_0425 Acidithiobacillus ferrivorans SS3 conjugation TrbI family protein YP_004782971.1 428844 D 743299 CDS YP_004782972.1 344198646 11043986 430081..430638 1 NC_015942.1 TIGRFAM: RNA polymerase sigma-70; sigma-70 family RNA polymerase sigma factor 430638 11043986 Acife_0426 Acidithiobacillus ferrivorans SS3 sigma-70 family RNA polymerase sigma factor YP_004782972.1 430081 D 743299 CDS YP_004782973.1 344198647 11043987 430719..431330 1 NC_015942.1 KEGG: bvi:Bcep1808_7573 hypothetical protein; hypothetical protein 431330 11043987 Acife_0427 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782973.1 430719 D 743299 CDS YP_004782974.1 344198648 11041691 431346..431855 1 NC_015942.1 KEGG: lpa:lpa_00698 hypothetical protein; hypothetical protein 431855 11041691 Acife_0428 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782974.1 431346 D 743299 CDS YP_004782975.1 344198649 11041692 431965..432186 1 NC_015942.1 PFAM: Protein of unknown function DUF433; KEGG: slt:Slit_0677 hypothetical protein; hypothetical protein 432186 11041692 Acife_0429 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782975.1 431965 D 743299 CDS YP_004782976.1 344198650 11041693 432186..432518 1 NC_015942.1 KEGG: slt:Slit_0676 hypothetical protein; hypothetical protein 432518 11041693 Acife_0430 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782976.1 432186 D 743299 CDS YP_004782977.1 344198651 11041696 434146..434547 1 NC_015942.1 KEGG: rme:Rmet_3350 hypothetical protein; hypothetical protein 434547 11041696 Acife_0433 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782977.1 434146 D 743299 CDS YP_004782978.1 344198652 11043988 434620..436137 1 NC_015942.1 KEGG: mfa:Mfla_2624 hypothetical protein; hypothetical protein 436137 11043988 Acife_0434 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782978.1 434620 D 743299 CDS YP_004782979.1 344198653 11041697 436377..439085 1 NC_015942.1 SMART: ATPase, AAA+ type, core; KEGG: gsu:GSU0763 helicase; AAA ATPase 439085 11041697 Acife_0435 Acidithiobacillus ferrivorans SS3 AAA ATPase YP_004782979.1 436377 D 743299 CDS YP_004782980.1 344198654 11041698 439875..440333 1 NC_015942.1 hypothetical protein 440333 11041698 Acife_0436 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782980.1 439875 D 743299 CDS YP_004782981.1 344198655 11041699 440343..443339 1 NC_015942.1 KEGG: mea:Mex_2p0509 hypothetical protein; hypothetical protein 443339 11041699 Acife_0437 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782981.1 440343 D 743299 CDS YP_004782982.1 344198656 11041700 443414..446083 1 NC_015942.1 PFAM: Domain of unknown function DUF1738; KEGG: afe:Lferr_0235 hypothetical protein; hypothetical protein 446083 11041700 Acife_0438 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782982.1 443414 D 743299 CDS YP_004782983.1 344198657 11043989 446165..446779 1 NC_015942.1 hypothetical protein 446779 11043989 Acife_0439 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782983.1 446165 D 743299 CDS YP_004782984.1 344198658 11041701 446776..447321 1 NC_015942.1 hypothetical protein 447321 11041701 Acife_0440 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782984.1 446776 D 743299 CDS YP_004782985.1 344198659 11041702 447308..448405 1 NC_015942.1 KEGG: cbs:COXBURSA331_A1817 IcmP protein; hypothetical protein 448405 11041702 Acife_0441 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782985.1 447308 D 743299 CDS YP_004782986.1 344198660 11041703 448402..450555 1 NC_015942.1 KEGG: mpt:Mpe_B0057 hypothetical protein; hypothetical protein 450555 11041703 Acife_0442 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782986.1 448402 D 743299 CDS YP_004782987.1 344198661 11041704 450753..451751 1 NC_015942.1 KEGG: tkm:TK90_0873 transcriptional regulator, LysR family; manually curated; PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; LysR family transcriptional regulator 451751 11041704 Acife_0443 Acidithiobacillus ferrivorans SS3 LysR family transcriptional regulator YP_004782987.1 450753 D 743299 CDS YP_004782988.1 344198662 11043990 451907..453601 1 NC_015942.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; KEGG: hna:Hneap_0212 NADH dehydrogenase (quinone); NADH/Ubiquinone/plastoquinone (complex I) 453601 11043990 Acife_0444 Acidithiobacillus ferrivorans SS3 NADH/Ubiquinone/plastoquinone (complex I) YP_004782988.1 451907 D 743299 CDS YP_004782989.1 344198663 11043991 453598..456009 1 NC_015942.1 KEGG: hna:Hneap_0211 protein of unknown function DUF2309; HAMAP: UPF0753 protein; PFAM: Protein of unknown function DUF2309; hypothetical protein 456009 11043991 Acife_0445 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782989.1 453598 D 743299 CDS YP_004782990.1 344198664 11041705 456086..457159 1 NC_015942.1 KEGG: afr:AFE_1659 hypothetical protein; hypothetical protein 457159 11041705 Acife_0446 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782990.1 456086 D 743299 CDS YP_004782991.1 344198665 11041706 457189..458067 1 NC_015942.1 KEGG: mep:MPQ_2045 hypothetical protein; hypothetical protein 458067 11041706 Acife_0447 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782991.1 457189 D 743299 CDS YP_004782992.1 344198666 11041707 458213..458758 1 NC_015942.1 KEGG: syp:SYNPCC7002_A2097 dihydroorotase; hypothetical protein 458758 11041707 Acife_0448 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782992.1 458213 D 743299 CDS YP_004782993.1 344198667 11041708 458822..459655 1 NC_015942.1 hypothetical protein 459655 11041708 Acife_0449 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782993.1 458822 D 743299 CDS YP_004782994.1 344198668 11041709 460132..460623 1 NC_015942.1 KEGG: gvi:glr2761 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; MarR family transcriptional regulator 460623 11041709 Acife_0450 Acidithiobacillus ferrivorans SS3 MarR family transcriptional regulator YP_004782994.1 460132 D 743299 CDS YP_004782995.1 344198669 11041710 460731..460958 1 NC_015942.1 PFAM: Iron sulphur domain-containing, CDGSH-type; KEGG: nde:NIDE0017 hypothetical protein; CDGSH-type iron sulfur domain-containing protein 460958 11041710 Acife_0451 Acidithiobacillus ferrivorans SS3 CDGSH-type iron sulfur domain-containing protein YP_004782995.1 460731 D 743299 CDS YP_004782996.1 344198670 11041711 460992..461636 1 NC_015942.1 PFAM: Lipid/polyisoprenoid-binding, YceI-like; KEGG: afr:AFE_0461 YceI-like family protein; YceI family protein 461636 11041711 Acife_0452 Acidithiobacillus ferrivorans SS3 YceI family protein YP_004782996.1 460992 D 743299 CDS YP_004782997.1 344198671 11041712 461697..462575 1 NC_015942.1 KEGG: mme:Marme_3300 hypothetical protein; hypothetical protein 462575 11041712 Acife_0453 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782997.1 461697 D 743299 CDS YP_004782998.1 344198672 11043992 462607..463059 1 NC_015942.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: fri:FraEuI1c_6011 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 463059 11043992 Acife_0454 Acidithiobacillus ferrivorans SS3 glyoxalase/bleomycin resistance protein/dioxygenase YP_004782998.1 462607 D 743299 CDS YP_004782999.1 344198673 11041713 463115..463342 1 NC_015942.1 KEGG: rah:Rahaq_4843 carboxylyase; hypothetical protein 463342 11041713 Acife_0455 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004782999.1 463115 D 743299 CDS YP_004783000.1 344198674 11043993 463861..466488 1 NC_015942.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: tin:Tint_2563 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase 466488 11043993 Acife_0456 Acidithiobacillus ferrivorans SS3 diguanylate cyclase/phosphodiesterase YP_004783000.1 463861 D 743299 CDS YP_004783001.1 344198675 11041714 469257..469439 1 NC_015942.1 hypothetical protein 469439 11041714 Acife_0458 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783001.1 469257 D 743299 CDS YP_004783002.1 344198676 11041715 complement(469445..470659) 1 NC_015942.1 PFAM: Transposase, Rhodopirellula-type; KEGG: eba:ebA5952 hypothetical protein; rhodopirellula transposase family protein 470659 11041715 Acife_0459 Acidithiobacillus ferrivorans SS3 rhodopirellula transposase family protein YP_004783002.1 469445 R 743299 CDS YP_004783003.1 344198677 11041716 470682..471746 1 NC_015942.1 PFAM: Transposase, IS116/IS110/IS902; KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 471746 11041716 Acife_0460 Acidithiobacillus ferrivorans SS3 transposase IS116/IS110/IS902 family protein YP_004783003.1 470682 D 743299 CDS YP_004783004.1 344198678 11043995 473775..473990 1 NC_015942.1 KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein; hypothetical protein 473990 11043995 Acife_0462 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783004.1 473775 D 743299 CDS YP_004783005.1 344198679 11043996 475395..476186 1 NC_015942.1 PFAM: Protein of unknown function DUF481; KEGG: afr:AFE_2054 hypothetical protein; hypothetical protein 476186 11043996 Acife_0466 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783005.1 475395 D 743299 CDS YP_004783006.1 344198680 11043997 476359..476601 1 NC_015942.1 TIGRFAM: Prevent-host-death protein; KEGG: mci:Mesci_2093 prevent-host-death family protein; prevent-host-death family protein 476601 11043997 Acife_0467 Acidithiobacillus ferrivorans SS3 prevent-host-death family protein YP_004783006.1 476359 D 743299 CDS YP_004783007.1 344198681 11041721 476598..476993 1 NC_015942.1 PFAM: PilT protein, N-terminal; KEGG: mag:amb1706 hypothetical protein; PilT protein domain-containing protein 476993 11041721 Acife_0468 Acidithiobacillus ferrivorans SS3 PilT protein domain-containing protein YP_004783007.1 476598 D 743299 CDS YP_004783008.1 344198682 11041722 477071..477415 1 NC_015942.1 KEGG: afr:AFE_2428 heavy metal efflux system protein, putative; heavy metal efflux system protein 477415 11041722 Acife_0469 Acidithiobacillus ferrivorans SS3 heavy metal efflux system protein YP_004783008.1 477071 D 743299 CDS YP_004783009.1 344198683 11041723 477635..478204 1 NC_015942.1 KEGG: afr:AFE_3146 rusticyanin; TIGRFAM: Rusticyanin; PFAM: Blue (type 1) copper domain; rusticyanin 478204 11041723 Acife_0470 Acidithiobacillus ferrivorans SS3 rusticyanin YP_004783009.1 477635 D 743299 CDS YP_004783010.1 344198684 11041724 478335..478634 1 NC_015942.1 KEGG: afr:AFE_2495 hypothetical protein; hypothetical protein 478634 11041724 Acife_0471 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783010.1 478335 D 743299 CDS YP_004783011.1 344198685 11041725 478658..479065 1 NC_015942.1 KEGG: afr:AFE_2494 hypothetical protein; hypothetical protein 479065 11041725 Acife_0472 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783011.1 478658 D 743299 CDS YP_004783012.1 344198686 11041726 479270..479422 1 NC_015942.1 hypothetical protein 479422 11041726 Acife_0473 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783012.1 479270 D 743299 CDS YP_004783013.1 344198687 11041727 479419..480285 1 NC_015942.1 KEGG: afr:AFE_2498 hypothetical protein; hypothetical protein 480285 11041727 Acife_0474 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783013.1 479419 D 743299 CDS YP_004783014.1 344198688 11041729 482119..483822 1 NC_015942.1 PFAM: Transposase, IS4-like; KEGG: eba:p2A213 transposase; transposase IS4 family protein 483822 11041729 Acife_0476 Acidithiobacillus ferrivorans SS3 transposase IS4 family protein YP_004783014.1 482119 D 743299 CDS YP_004783015.1 344198689 11041730 484026..484202 1 NC_015942.1 KEGG: ajs:Ajs_1976 transposase IS116/IS110/IS902 family protein; hypothetical protein 484202 11041730 Acife_0477 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783015.1 484026 D 743299 CDS YP_004783016.1 344198690 11043998 485238..485840 1 NC_015942.1 PFAM: Plasmid pRiA4b ORF-3-like; KEGG: bps:BPSS2075 hypothetical protein; plasmid pRiA4b ORF-3 family protein 485840 11043998 Acife_0479 Acidithiobacillus ferrivorans SS3 plasmid pRiA4b ORF-3 family protein YP_004783016.1 485238 D 743299 CDS YP_004783017.1 344198691 11041732 485894..486397 1 NC_015942.1 PFAM: GCN5-related N-acetyltransferase; KEGG: afr:AFE_2467 acetyltransferase, GNAT family; GCN5-like N-acetyltransferase 486397 11041732 Acife_0480 Acidithiobacillus ferrivorans SS3 GCN5-like N-acetyltransferase YP_004783017.1 485894 D 743299 CDS YP_004783018.1 344198692 11041734 complement(488101..488619) 1 NC_015942.1 KEGG: afe:Lferr_0754 periplasmic solute-binding protein; hypothetical protein 488619 11041734 Acife_0482 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783018.1 488101 R 743299 CDS YP_004783019.1 344198693 11041735 489075..490451 1 NC_015942.1 KEGG: afe:Lferr_0157 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein 490451 11041735 Acife_0483 Acidithiobacillus ferrivorans SS3 natural resistance-associated macrophage protein YP_004783019.1 489075 D 743299 CDS YP_004783020.1 344198694 11043999 490462..490677 1 NC_015942.1 KEGG: afe:Lferr_0156 hypothetical protein; hypothetical protein 490677 11043999 Acife_0484 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783020.1 490462 D 743299 CDS YP_004783021.1 344198695 11044000 490830..491954 1 NC_015942.1 PFAM: Carbohydrate-selective porin OprB; KEGG: afr:AFE_2250 carbohydrate-selective porin, OprB family; carbohydrate-selective porin OprB 491954 11044000 Acife_0485 Acidithiobacillus ferrivorans SS3 carbohydrate-selective porin OprB YP_004783021.1 490830 D 743299 CDS YP_004783022.1 344198696 11041736 492041..492748 1 NC_015942.1 PFAM: MgtC/SapB transporter; KEGG: afe:Lferr_0155 MgtC/SapB transporter; MgtC/SapB transporter 492748 11041736 Acife_0486 Acidithiobacillus ferrivorans SS3 MgtC/SapB transporter YP_004783022.1 492041 D 743299 CDS YP_004783023.1 344198697 11044001 492931..493188 1 NC_015942.1 TIGRFAM: Acyl carrier protein (ACP); HAMAP: Acyl carrier protein (ACP); KEGG: afr:AFE_1909 acyl carrier protein; PFAM: Phosphopantetheine-binding; acyl carrier protein 493188 11044001 Acife_0487 Acidithiobacillus ferrivorans SS3 acyl carrier protein YP_004783023.1 492931 D 743299 CDS YP_004783024.1 344198698 11041738 complement(493346..493807) 1 NC_015942.1 TIGRFAM: Cd(II)/Pb(II)-responsive transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; KEGG: afr:AFE_2421 Cd(II)/Pb(II)-responsive transcriptional regulator; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator 493807 11041738 Acife_0489 Acidithiobacillus ferrivorans SS3 MerR family transcriptional regulator YP_004783024.1 493346 R 743299 CDS YP_004783025.1 344198699 11041739 493907..494863 1 NC_015942.1 KEGG: afr:AFE_2420 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein; cation diffusion facilitator family transporter 494863 11041739 Acife_0490 Acidithiobacillus ferrivorans SS3 cation diffusion facilitator family transporter YP_004783025.1 493907 D 743299 CDS YP_004783026.1 344198700 11041740 495102..495749 1 NC_015942.1 KEGG: afr:AFE_2424 cation efflux permease, putative; manually curated; PFAM: Cation efflux protein; cation efflux protein 495749 11041740 Acife_0491 Acidithiobacillus ferrivorans SS3 cation efflux protein YP_004783026.1 495102 D 743299 CDS YP_004783027.1 344198701 11041741 496363..497514 1 NC_015942.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: afe:Lferr_0188 class V aminotransferase; class V aminotransferase 497514 11041741 Acife_0492 Acidithiobacillus ferrivorans SS3 class V aminotransferase YP_004783027.1 496363 D 743299 CDS YP_004783028.1 344198702 11044002 497774..499099 1 NC_015942.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afe:Lferr_0195 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 499099 11044002 Acife_0494 Acidithiobacillus ferrivorans SS3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004783028.1 497774 D 743299 CDS YP_004783029.1 344198703 11044003 complement(499233..500870) 1 NC_015942.1 PFAM: Tetratricopeptide TPR2; Tetratricopeptide TPR-1; KEGG: afe:Lferr_0200 TPR repeat-containing protein; hypothetical protein 500870 11044003 Acife_0495 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783029.1 499233 R 743299 CDS YP_004783030.1 344198704 11041743 complement(501109..502299) 1 NC_015942.1 KEGG: afr:AFE_2463 hypothetical protein; hypothetical protein 502299 11041743 Acife_0496 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783030.1 501109 R 743299 CDS YP_004783031.1 344198705 11041744 502455..502733 1 NC_015942.1 hypothetical protein 502733 11041744 Acife_0497 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783031.1 502455 D 743299 CDS YP_004783032.1 344198706 11041745 503269..504579 1 NC_015942.1 PFAM: Outer membrane efflux protein; KEGG: afe:Lferr_0170 outer membrane efflux protein; outer membrane efflux protein 504579 11041745 Acife_0498 Acidithiobacillus ferrivorans SS3 outer membrane efflux protein YP_004783032.1 503269 D 743299 CDS YP_004783033.1 344198707 11041746 504576..506012 1 NC_015942.1 KEGG: afr:AFE_2433 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 506012 11041746 Acife_0499 Acidithiobacillus ferrivorans SS3 RND family efflux transporter MFP subunit YP_004783033.1 504576 D 743299 CDS YP_004783034.1 344198708 11041747 506005..509115 1 NC_015942.1 KEGG: afe:Lferr_0172 CzcA family heavy metal efflux pump; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump 509115 11041747 Acife_0500 Acidithiobacillus ferrivorans SS3 CzcA family heavy metal efflux pump YP_004783034.1 506005 D 743299 CDS YP_004783035.1 344198709 11041748 509141..509887 1 NC_015942.1 KEGG: afe:Lferr_0173 cytochrome b561; cytochrome b561 509887 11041748 Acife_0501 Acidithiobacillus ferrivorans SS3 cytochrome b561 YP_004783035.1 509141 D 743299 CDS YP_004783036.1 344198710 11044004 510015..510377 1 NC_015942.1 KEGG: afe:Lferr_0174 hypothetical protein; hypothetical protein 510377 11044004 Acife_0502 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783036.1 510015 D 743299 CDS YP_004783037.1 344198711 11041749 510495..510803 1 NC_015942.1 KEGG: afe:Lferr_2056 hypothetical protein; hypothetical protein 510803 11041749 Acife_0503 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783037.1 510495 D 743299 CDS YP_004783038.1 344198712 11041751 complement(512118..512330) 1 NC_015942.1 hypothetical protein 512330 11041751 Acife_0505 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783038.1 512118 R 743299 CDS YP_004783039.1 344198713 11044005 complement(512751..514475) 1 NC_015942.1 KEGG: ade:Adeh_0726 hypothetical protein; hypothetical protein 514475 11044005 Acife_0506 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783039.1 512751 R 743299 CDS YP_004783040.1 344198714 11041752 514620..515012 1 NC_015942.1 hypothetical protein 515012 11041752 Acife_0507 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783040.1 514620 D 743299 CDS YP_004783041.1 344198715 11041753 515026..515346 1 NC_015942.1 hypothetical protein 515346 11041753 Acife_0508 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783041.1 515026 D 743299 CDS YP_004783042.1 344198716 11041754 515343..515807 1 NC_015942.1 hypothetical protein 515807 11041754 Acife_0509 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783042.1 515343 D 743299 CDS YP_004783043.1 344198717 11041755 515779..517050 1 NC_015942.1 KEGG: xcv:XCVd0030 putative secreted protein; hypothetical protein 517050 11041755 Acife_0510 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783043.1 515779 D 743299 CDS YP_004783044.1 344198718 11041756 517063..517188 1 NC_015942.1 hypothetical protein 517188 11041756 Acife_0511 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783044.1 517063 D 743299 CDS YP_004783045.1 344198719 11044006 517212..517847 1 NC_015942.1 hypothetical protein 517847 11044006 Acife_0512 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783045.1 517212 D 743299 CDS YP_004783046.1 344198720 11044007 517844..518128 1 NC_015942.1 hypothetical protein 518128 11044007 Acife_0513 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783046.1 517844 D 743299 CDS YP_004783047.1 344198721 11041757 518132..520375 1 NC_015942.1 KEGG: rme:Rmet_2827 putative TraY/DotA-like type IV secretion system protein; hypothetical protein 520375 11041757 Acife_0514 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783047.1 518132 D 743299 CDS YP_004783048.1 344198722 11044008 520417..520635 1 NC_015942.1 hypothetical protein 520635 11044008 Acife_0515 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783048.1 520417 D 743299 CDS YP_004783049.1 344198723 11041758 520710..522416 1 NC_015942.1 PFAM: Transposase, IS4-like; KEGG: eba:p2A221 transposase; transposase IS4 family protein 522416 11041758 Acife_0516 Acidithiobacillus ferrivorans SS3 transposase IS4 family protein YP_004783049.1 520710 D 743299 CDS YP_004783050.1 344198724 11041759 complement(522695..524389) 1 NC_015942.1 PFAM: Transposase, IS4-like; KEGG: eba:p2A221 transposase; transposase IS4 family protein 524389 11041759 Acife_0517 Acidithiobacillus ferrivorans SS3 transposase IS4 family protein YP_004783050.1 522695 R 743299 CDS YP_004783051.1 344198725 11041760 complement(524686..527415) 1 NC_015942.1 KEGG: tbd:Tbd_1686 putative ATP-dependent exoDNAse (exonuclease V) alpha subunit; TIGRFAM: Conjugative relaxase region, N-terminal; PFAM: TrwC relaxase; conjugative relaxase domain-containing protein 527415 11041760 Acife_0518 Acidithiobacillus ferrivorans SS3 conjugative relaxase domain-containing protein YP_004783051.1 524686 R 743299 CDS YP_004783052.1 344198726 11044009 527657..527845 1 NC_015942.1 hypothetical protein 527845 11044009 Acife_0519 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783052.1 527657 D 743299 CDS YP_004783053.1 344198727 11041761 complement(528016..531555) 1 NC_015942.1 KEGG: dba:Dbac_1053 SMC domain protein; SMC domain-containing protein 531555 11041761 Acife_0520 Acidithiobacillus ferrivorans SS3 SMC domain-containing protein YP_004783053.1 528016 R 743299 CDS YP_004783054.1 344198728 11041762 complement(531552..532817) 1 NC_015942.1 PFAM: Metallophosphoesterase; KEGG: scl:sce7166 DNA repair exonuclease family protein; metallophosphoesterase 532817 11041762 Acife_0521 Acidithiobacillus ferrivorans SS3 metallophosphoesterase YP_004783054.1 531552 R 743299 CDS YP_004783055.1 344198729 11041763 532934..533170 1 NC_015942.1 KEGG: tmz:Tmz1t_0957 excision promoter, Xis; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: HTH transcriptional regulator, MerR; excisionase family DNA binding domain-containing protein 533170 11041763 Acife_0522 Acidithiobacillus ferrivorans SS3 excisionase family DNA binding domain-containing protein YP_004783055.1 532934 D 743299 CDS YP_004783056.1 344198730 11041764 533167..536361 1 NC_015942.1 KEGG: gpb:HDN1F_22900 helicase, C-terminal domain; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; helicase domain-containing protein 536361 11041764 Acife_0523 Acidithiobacillus ferrivorans SS3 helicase domain-containing protein YP_004783056.1 533167 D 743299 CDS YP_004783057.1 344198731 11041765 536358..537143 1 NC_015942.1 KEGG: gpb:HDN1F_22910 hypothetical protein; hypothetical protein 537143 11041765 Acife_0524 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783057.1 536358 D 743299 CDS YP_004783058.1 344198732 11041766 537170..539155 1 NC_015942.1 PFAM: DNA methylase N-4/N-6; KEGG: dac:Daci_4205 DNA methylase N-4/N-6 domain-containing protein; DNA methylase N-4/N-6 domain-containing protein 539155 11041766 Acife_0525 Acidithiobacillus ferrivorans SS3 DNA methylase N-4/N-6 domain-containing protein YP_004783058.1 537170 D 743299 CDS YP_004783059.1 344198733 11041767 540340..543327 1 NC_015942.1 PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: gpb:HDN1F_22930 type III restriction enzyme, res subunit; type III restriction protein res subunit 543327 11041767 Acife_0527 Acidithiobacillus ferrivorans SS3 type III restriction protein res subunit YP_004783059.1 540340 D 743299 CDS YP_004783060.1 344198734 11041768 complement(543407..543640) 1 NC_015942.1 hypothetical protein 543640 11041768 Acife_0528 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783060.1 543407 R 743299 CDS YP_004783061.1 344198735 11041769 complement(543749..544915) 1 NC_015942.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: psa:PST_3126 GGDEF domain-containing protein; SMART: Diguanylate cyclase, predicted; diguanylate cyclase 544915 11041769 Acife_0529 Acidithiobacillus ferrivorans SS3 diguanylate cyclase YP_004783061.1 543749 R 743299 CDS YP_004783062.1 344198736 11044011 complement(545212..546495) 1 NC_015942.1 KEGG: lhk:LHK_02469 hypothetical protein; PFAM: Phage P4 alpha, zinc-binding; SMART: Phage P4 alpha, zinc-binding; P4 alpha zinc-binding domain-containing protein 546495 11044011 Acife_0530 Acidithiobacillus ferrivorans SS3 P4 alpha zinc-binding domain-containing protein YP_004783062.1 545212 R 743299 CDS YP_004783063.1 344198737 11041770 complement(546529..547095) 1 NC_015942.1 hypothetical protein 547095 11041770 Acife_0531 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783063.1 546529 R 743299 CDS YP_004783064.1 344198738 11044012 complement(547107..547634) 1 NC_015942.1 hypothetical protein 547634 11044012 Acife_0532 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783064.1 547107 R 743299 CDS YP_004783065.1 344198739 11044013 complement(547631..548614) 1 NC_015942.1 PFAM: StbA; KEGG: mea:Mex_2p0044 hypothetical protein; StbA family protein 548614 11044013 Acife_0533 Acidithiobacillus ferrivorans SS3 StbA family protein YP_004783065.1 547631 R 743299 CDS YP_004783066.1 344198740 11041771 complement(548618..549232) 1 NC_015942.1 hypothetical protein 549232 11041771 Acife_0534 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783066.1 548618 R 743299 CDS YP_004783067.1 344198741 11041772 complement(549229..549489) 1 NC_015942.1 hypothetical protein 549489 11041772 Acife_0535 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783067.1 549229 R 743299 CDS YP_004783068.1 344198742 11044014 complement(549645..550352) 1 NC_015942.1 KEGG: amv:ACMV_28150 hypothetical protein; hypothetical protein 550352 11044014 Acife_0536 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783068.1 549645 R 743299 CDS YP_004783069.1 344198743 11044015 complement(550529..550831) 1 NC_015942.1 KEGG: afr:AFE_1243 hypothetical protein; hypothetical protein 550831 11044015 Acife_0537 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783069.1 550529 R 743299 CDS YP_004783070.1 344198744 11041773 complement(550843..551220) 1 NC_015942.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: afr:AFE_2919 lipoprotein, putative; 17 kDa surface antigen 551220 11041773 Acife_0538 Acidithiobacillus ferrivorans SS3 17 kDa surface antigen YP_004783070.1 550843 R 743299 CDS YP_004783071.1 344198745 11044016 complement(551260..551541) 1 NC_015942.1 hypothetical protein 551541 11044016 Acife_0539 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783071.1 551260 R 743299 CDS YP_004783072.1 344198746 11041774 complement(551553..551825) 1 NC_015942.1 hypothetical protein 551825 11041774 Acife_0540 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783072.1 551553 R 743299 CDS YP_004783073.1 344198747 11041775 complement(551818..552993) 1 NC_015942.1 KEGG: cbs:COXBURSA331_A1833 Dot/Icm secretion system ATPase DotB; PFAM: Type II secretion system protein E; SMART: ATPase, AAA+ type, core; type II secretion system protein E 552993 11041775 Acife_0541 Acidithiobacillus ferrivorans SS3 type II secretion system protein E YP_004783073.1 551818 R 743299 CDS YP_004783074.1 344198748 11041776 complement(552990..553727) 1 NC_015942.1 KEGG: bvi:Bcep1808_7636 hypothetical protein; hypothetical protein 553727 11041776 Acife_0542 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783074.1 552990 R 743299 CDS YP_004783075.1 344198749 11041777 complement(553731..554222) 1 NC_015942.1 KEGG: lpc:LPC_0463 lipoprotein DotD; hypothetical protein 554222 11041777 Acife_0543 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783075.1 553731 R 743299 CDS YP_004783076.1 344198750 11041779 complement(554528..555475) 1 NC_015942.1 KEGG: afr:AFE_2766 ribose-phosphate pyrophosphokinase; TIGRFAM: Phosphoribosyl pyrophosphokinase; PFAM: Phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 555475 11041779 Acife_0544 Acidithiobacillus ferrivorans SS3 ribose-phosphate pyrophosphokinase YP_004783076.1 554528 R 743299 CDS YP_004783077.1 344198751 11041781 complement(555604..556449) 1 NC_015942.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; HAMAP: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; KEGG: afr:AFE_2764 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C-terminal; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 556449 11041781 Acife_0545 Acidithiobacillus ferrivorans SS3 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase YP_004783077.1 555604 R 743299 CDS YP_004783078.1 344198752 11041782 complement(556446..557102) 1 NC_015942.1 KEGG: afr:AFE_2763 outer membrane lipoprotein LolB, putative; TIGRFAM: Outer membrane lipoprotein LolB; PFAM: Outer membrane lipoprotein LolB; outer membrane lipoprotein LolB 557102 11041782 Acife_0546 Acidithiobacillus ferrivorans SS3 outer membrane lipoprotein LolB YP_004783078.1 556446 R 743299 CDS YP_004783079.1 344198753 11041783 complement(557099..558760) 1 NC_015942.1 KEGG: afr:AFE_2762 TPR domain protein; hypothetical protein 558760 11041783 Acife_0547 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783079.1 557099 R 743299 CDS YP_004783080.1 344198754 11044017 558831..560147 1 NC_015942.1 PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, C-terminal; manually curated; TIGRFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; KEGG: afr:AFE_2761 glutamyl-tRNA reductase; HAMAP: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase; glutamyl-tRNA reductase 560147 11044017 Acife_0548 Acidithiobacillus ferrivorans SS3 glutamyl-tRNA reductase YP_004783080.1 558831 D 743299 CDS YP_004783081.1 344198755 11041784 560144..561241 1 NC_015942.1 TIGRFAM: Peptide chain release factor 1; HAMAP: Peptide chain release factor 1; KEGG: afr:AFE_2760 peptide chain release factor 1; PFAM: Class I peptide chain release factor; Peptide chain release factor; peptide chain release factor 1 561241 11041784 Acife_0549 Acidithiobacillus ferrivorans SS3 peptide chain release factor 1 YP_004783081.1 560144 D 743299 CDS YP_004783082.1 344198756 11041785 561231..562097 1 NC_015942.1 KEGG: afr:AFE_2759 modification methylase, HemK family; TIGRFAM: Protein-(glutamine-N5) methyltransferase, release factor-specific; Modification methylase HemK; PFAM: Methyltransferase small; protein-(glutamine-N5) methyltransferase 562097 11041785 Acife_0550 Acidithiobacillus ferrivorans SS3 protein-(glutamine-N5) methyltransferase YP_004783082.1 561231 D 743299 CDS YP_004783083.1 344198757 11041786 562100..562912 1 NC_015942.1 TIGRFAM: DNA glycosylase/AP lyase; HAMAP: Formamidopyrimidine-DNA glycosylase; KEGG: afr:AFE_2758 formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, catalytic domain; DNA glycosylase/AP lyase, H2TH DNA-binding; formamidopyrimidine-DNA glycosylase 562912 11041786 Acife_0551 Acidithiobacillus ferrivorans SS3 formamidopyrimidine-DNA glycosylase YP_004783083.1 562100 D 743299 CDS YP_004783084.1 344198758 11041787 562929..564908 1 NC_015942.1 PFAM: GTP-binding protein, HSR1-related; KEGG: afr:AFE_2756 hypothetical protein; GTP-binding protein HSR1-like protein 564908 11041787 Acife_0552 Acidithiobacillus ferrivorans SS3 GTP-binding protein HSR1-like protein YP_004783084.1 562929 D 743299 CDS YP_004783085.1 344198759 11041788 complement(564892..565143) 1 NC_015942.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: afr:AFE_2757 iron-sulfur cluster-binding protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 565143 11041788 Acife_0553 Acidithiobacillus ferrivorans SS3 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004783085.1 564892 R 743299 CDS YP_004783086.1 344198760 11044018 complement(565172..565696) 1 NC_015942.1 TIGRFAM: Coenzyme A biosynthesis protein; Cytidyltransferase-related; HAMAP: Coenzyme A biosynthesis protein; KEGG: afr:AFE_2755 pantetheine-phosphate adenylyltransferase; PFAM: Cytidylyltransferase; phosphopantetheine adenylyltransferase 565696 11044018 Acife_0554 Acidithiobacillus ferrivorans SS3 phosphopantetheine adenylyltransferase YP_004783086.1 565172 R 743299 CDS YP_004783087.1 344198761 11044019 complement(565689..566258) 1 NC_015942.1 KEGG: afr:AFE_2754 methyltransferase, putative; TIGRFAM: Conserved hypothetical protein CHP00095; PFAM: Protein of unknown function methylase putative; methyltransferase 566258 11044019 Acife_0555 Acidithiobacillus ferrivorans SS3 methyltransferase YP_004783087.1 565689 R 743299 CDS YP_004783088.1 344198762 11041789 566381..567478 1 NC_015942.1 TIGRFAM: Cell division transporter substrate-binding protein FtsY; PFAM: Signal recognition particle, SRP54 subunit, GTPase; Signal recognition particle, SRP54 subunit, helical bundle; KEGG: afe:Lferr_2373 signal recognition particle-docking protein FtsY; SMART: ATPase, AAA+ type, core; signal recognition particle-docking protein FtsY 567478 11041789 Acife_0556 Acidithiobacillus ferrivorans SS3 signal recognition particle-docking protein FtsY YP_004783088.1 566381 D 743299 CDS YP_004783089.1 344198763 11041790 567475..568146 1 NC_015942.1 TIGRFAM: Cell division ATP-binding protein FtsE; PFAM: ABC transporter-like; KEGG: afr:AFE_2752 cell division ATP-binding protein FtsE; SMART: ATPase, AAA+ type, core; cell division ATP-binding protein FtsE 568146 11041790 Acife_0557 Acidithiobacillus ferrivorans SS3 cell division ATP-binding protein FtsE YP_004783089.1 567475 D 743299 CDS YP_004783090.1 344198764 11041791 568143..569048 1 NC_015942.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: afr:AFE_2751 cell division protein FtsX, putative; hypothetical protein 569048 11041791 Acife_0558 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783090.1 568143 D 743299 CDS YP_004783091.1 344198765 11041792 569123..569974 1 NC_015942.1 KEGG: afr:AFE_2750 RNA polymerase sigma-32 factor; TIGRFAM: RNA polymerase sigma factor RpoH, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; RNA polymerase sigma-32 subunit RpoH 569974 11041792 Acife_0559 Acidithiobacillus ferrivorans SS3 RNA polymerase sigma-32 subunit RpoH YP_004783091.1 569123 D 743299 CDS YP_004783092.1 344198766 11044020 569971..570303 1 NC_015942.1 KEGG: afr:AFE_2749 hypothetical protein; hypothetical protein 570303 11044020 Acife_0560 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783092.1 569971 D 743299 CDS YP_004783093.1 344198767 11041793 complement(570325..571653) 1 NC_015942.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Heat shock protein HslU; KEGG: afr:AFE_2748 heat shock protein HslVU, ATPase subunit HslU; HAMAP: ATP-dependent hsl protease ATP-binding subunit hslU; PFAM: ATPase associated with various cellular activities, AAA-2; Clp ATPase, C-terminal; ATP-dependent hsl protease ATP-binding subunit hslU 571653 11041793 Acife_0561 Acidithiobacillus ferrivorans SS3 ATP-dependent hsl protease ATP-binding subunit hslU YP_004783093.1 570325 R 743299 CDS YP_004783094.1 344198768 11041794 complement(571650..572189) 1 NC_015942.1 TIGRFAM: ATP-dependent protease HslVU, peptidase subunit; HAMAP: ATP-dependent protease hslV; KEGG: afe:Lferr_2367 ATP-dependent protease peptidase subunit; PFAM: Proteasome, subunit alpha/beta; ATP-dependent protease hslV 572189 11041794 Acife_0562 Acidithiobacillus ferrivorans SS3 ATP-dependent protease hslV YP_004783094.1 571650 R 743299 CDS YP_004783095.1 344198769 11044021 complement(572186..573127) 1 NC_015942.1 KEGG: afr:AFE_2746 tyrosine recombinase XerC; HAMAP: Tyrosine recombinase xerC; PFAM: Integrase, catalytic core, phage; Integrase, N-terminal SAM-like, phage; Tyrosine recombinase xerC 573127 11044021 Acife_0563 Acidithiobacillus ferrivorans SS3 Tyrosine recombinase xerC YP_004783095.1 572186 R 743299 CDS YP_004783096.1 344198770 11041795 complement(573121..573804) 1 NC_015942.1 PFAM: Protein of unknown function DUF484; KEGG: afr:AFE_2745 hypothetical protein; hypothetical protein 573804 11041795 Acife_0564 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783096.1 573121 R 743299 CDS YP_004783097.1 344198771 11041796 complement(573805..573981) 1 NC_015942.1 KEGG: afr:AFE_2744 hypothetical protein; hypothetical protein 573981 11041796 Acife_0565 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783097.1 573805 R 743299 CDS YP_004783098.1 344198772 11041797 complement(574017..574883) 1 NC_015942.1 TIGRFAM: Diaminopimelate epimerase; HAMAP: Diaminopimelate epimerase; KEGG: afe:Lferr_2363 diaminopimelate epimerase; PFAM: Diaminopimelate epimerase; diaminopimelate epimerase 574883 11041797 Acife_0566 Acidithiobacillus ferrivorans SS3 diaminopimelate epimerase YP_004783098.1 574017 R 743299 CDS YP_004783099.1 344198773 11044023 575303..576493 1 NC_015942.1 PFAM: Phosphate-selective porin O/P; KEGG: afr:AFE_2741 major outer membrane protein 40; phosphate-selective porin O and P 576493 11044023 Acife_0567 Acidithiobacillus ferrivorans SS3 phosphate-selective porin O and P YP_004783099.1 575303 D 743299 CDS YP_004783100.1 344198774 11044024 576649..578466 1 NC_015942.1 KEGG: afe:Lferr_2361 GTP-binding protein TypA; TIGRFAM: GTP-binding protein TypA; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; GTP-binding protein TypA 578466 11044024 Acife_0568 Acidithiobacillus ferrivorans SS3 GTP-binding protein TypA YP_004783100.1 576649 D 743299 CDS YP_004783101.1 344198775 11041798 complement(578557..579171) 1 NC_015942.1 PFAM: Methyltransferase type 11; KEGG: afr:AFE_2739 phosphatidylethanolamine N-methyltransferase, putative; type 11 methyltransferase 579171 11041798 Acife_0569 Acidithiobacillus ferrivorans SS3 type 11 methyltransferase YP_004783101.1 578557 R 743299 CDS YP_004783102.1 344198776 11044025 complement(579168..579551) 1 NC_015942.1 KEGG: afr:AFE_2738 ApaG protein; HAMAP: Protein ApaG; PFAM: ApaG; protein ApaG 579551 11044025 Acife_0570 Acidithiobacillus ferrivorans SS3 protein ApaG YP_004783102.1 579168 R 743299 CDS YP_004783103.1 344198777 11041799 complement(579641..579925) 1 NC_015942.1 PFAM: RNA-binding, CRM domain; KEGG: afr:AFE_2737 hypothetical protein; hypothetical protein 579925 11041799 Acife_0571 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783103.1 579641 R 743299 CDS YP_004783104.1 344198778 11041800 580015..580674 1 NC_015942.1 KEGG: afr:AFE_2736 ribosomal RNA large subunit methyltransferase J; HAMAP: Ribosomal RNA large subunit methyltransferase E; PFAM: Ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA large subunit methyltransferase E 580674 11041800 Acife_0572 Acidithiobacillus ferrivorans SS3 ribosomal RNA large subunit methyltransferase E YP_004783104.1 580015 D 743299 CDS YP_004783105.1 344198779 11041802 581547..583217 1 NC_015942.1 TIGRFAM: Hybrid cluster protein; HAMAP: Hybrid cluster protein; KEGG: afr:AFE_1657 hydroxylamine reductase; PFAM: Prismane; hydroxylamine reductase 583217 11041802 Acife_0574 Acidithiobacillus ferrivorans SS3 hydroxylamine reductase YP_004783105.1 581547 D 743299 CDS YP_004783106.1 344198780 11041803 583276..584304 1 NC_015942.1 PFAM: Oxidoreductase FAD-binding region; Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; KEGG: afr:AFE_1656 ferredoxin/oxidoreductase, FAD/NAD-binding; oxidoreductase FAD-binding domain-containing protein 584304 11041803 Acife_0575 Acidithiobacillus ferrivorans SS3 oxidoreductase FAD-binding domain-containing protein YP_004783106.1 583276 D 743299 CDS YP_004783107.1 344198781 11044027 complement(584441..585553) 1 NC_015942.1 PFAM: FIST C domain; KEGG: mep:MPQ_1799 hypothetical protein; FIST C domain-containing protein 585553 11044027 Acife_0576 Acidithiobacillus ferrivorans SS3 FIST C domain-containing protein YP_004783107.1 584441 R 743299 CDS YP_004783108.1 344198782 11041804 complement(585532..586182) 1 NC_015942.1 TIGRFAM: Endonuclease III/Nth; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: afr:AFE_2682 endonuclease III; SMART: HhH-GPD domain; endonuclease III 586182 11041804 Acife_0577 Acidithiobacillus ferrivorans SS3 endonuclease III YP_004783108.1 585532 R 743299 CDS YP_004783109.1 344198783 11041805 complement(586283..586699) 1 NC_015942.1 KEGG: afr:AFE_2680 hypothetical protein; hypothetical protein 586699 11041805 Acife_0578 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783109.1 586283 R 743299 CDS YP_004783110.1 344198784 11041806 complement(586783..588171) 1 NC_015942.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: afr:AFE_2679 metallo-beta-lactamase family protein; RNA-metabolising metallo-beta-lactamase 588171 11041806 Acife_0579 Acidithiobacillus ferrivorans SS3 RNA-metabolising metallo-beta-lactamase YP_004783110.1 586783 R 743299 CDS YP_004783111.1 344198785 11041807 complement(588259..589722) 1 NC_015942.1 TIGRFAM: Glycogen/starch synthases, ADP-glucose type; HAMAP: Glycogen/starch synthases, ADP-glucose type; KEGG: afr:AFE_2678 glycogen synthase; PFAM: Starch synthase catalytic region; Glycosyl transferase, group 1; glycogen synthase 589722 11041807 Acife_0580 Acidithiobacillus ferrivorans SS3 glycogen synthase YP_004783111.1 588259 R 743299 CDS YP_004783112.1 344198786 11044028 complement(590510..592216) 1 NC_015942.1 KEGG: afr:AFE_2676 hypothetical protein; hypothetical protein 592216 11044028 Acife_0582 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783112.1 590510 R 743299 CDS YP_004783113.1 344198787 11041809 592378..592824 1 NC_015942.1 PFAM: Protein of unknown function DUF1841; KEGG: afr:AFE_2675 hypothetical protein; hypothetical protein 592824 11041809 Acife_0583 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783113.1 592378 D 743299 CDS YP_004783114.1 344198788 11041810 592869..594665 1 NC_015942.1 PFAM: Peptidase M3A/M3B, thimet/oligopeptidase F; Peptidase M3B, oligopeptidase F, N-terminal; KEGG: afr:AFE_2674 oligoendopeptidase F, putative; peptidase M3A and M3B thimet/oligopeptidase F 594665 11041810 Acife_0584 Acidithiobacillus ferrivorans SS3 peptidase M3A and M3B thimet/oligopeptidase F YP_004783114.1 592869 D 743299 CDS YP_004783115.1 344198789 11041811 594668..596047 1 NC_015942.1 TIGRFAM: Fumarate hydratase, class II; HAMAP: Fumarate hydratase class II; KEGG: afr:AFE_2673 fumarate hydratase, class II; PFAM: Fumarate lyase; Fumarase C, C-terminal; fumarate hydratase class II 596047 11041811 Acife_0585 Acidithiobacillus ferrivorans SS3 fumarate hydratase class II YP_004783115.1 594668 D 743299 CDS YP_004783116.1 344198790 11041812 596096..597256 1 NC_015942.1 PFAM: DAHP synthetase I/KDSA; KEGG: afr:AFE_2671 phospho-2-dehydro-3-deoxyheptonate aldolase, putative; DAHP synthetase I/KDSA 597256 11041812 Acife_0586 Acidithiobacillus ferrivorans SS3 DAHP synthetase I/KDSA YP_004783116.1 596096 D 743299 CDS YP_004783117.1 344198791 11044029 complement(597249..599267) 1 NC_015942.1 TIGRFAM: Methionyl-tRNA synthetase, class Ia; Methionyl-tRNA synthetase, class Ia, beta subunit, C-terminal; HAMAP: Methionyl-tRNA synthetase; KEGG: afr:AFE_2672 methionyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class I (M); tRNA-binding region; methionyl-tRNA synthetase 599267 11044029 Acife_0587 Acidithiobacillus ferrivorans SS3 methionyl-tRNA synthetase YP_004783117.1 597249 R 743299 CDS YP_004783118.1 344198792 11041813 599335..599613 1 NC_015942.1 TIGRFAM: Ribosomal protein L28; HAMAP: Ribosomal protein L28; KEGG: afr:AFE_2670 50S ribosomal protein L28; PFAM: Ribosomal protein L28; 50S ribosomal protein L28 599613 11041813 Acife_0588 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L28 YP_004783118.1 599335 D 743299 CDS YP_004783119.1 344198793 11041814 599624..599779 1 NC_015942.1 TIGRFAM: Ribosomal protein L33; HAMAP: Ribosomal protein L33; KEGG: afr:AFE_2669 50S ribosomal protein L33; PFAM: Ribosomal protein L33; 50S ribosomal protein L33 599779 11041814 Acife_0589 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L33 YP_004783119.1 599624 D 743299 CDS YP_004783120.1 344198794 11041815 600023..601042 1 NC_015942.1 TIGRFAM: Negative regulator of class I heat shock protein; HAMAP: Negative regulator of class I heat shock protein; KEGG: afr:AFE_2667 heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; heat-inducible transcription repressor HrcA 601042 11041815 Acife_0590 Acidithiobacillus ferrivorans SS3 heat-inducible transcription repressor HrcA YP_004783120.1 600023 D 743299 CDS YP_004783121.1 344198795 11041816 601122..601640 1 NC_015942.1 KEGG: afr:AFE_2666 co-chaperone GrpE; HAMAP: GrpE nucleotide exchange factor; PFAM: GrpE nucleotide exchange factor; protein grpE 601640 11041816 Acife_0591 Acidithiobacillus ferrivorans SS3 protein grpE YP_004783121.1 601122 D 743299 CDS YP_004783122.1 344198796 11041817 601686..603590 1 NC_015942.1 TIGRFAM: Chaperone DnaK; HAMAP: Chaperone DnaK; KEGG: afr:AFE_2665 chaperone protein DnaK; PFAM: Heat shock protein 70; chaperone protein dnaK 603590 11041817 Acife_0592 Acidithiobacillus ferrivorans SS3 chaperone protein dnaK YP_004783122.1 601686 D 743299 CDS YP_004783123.1 344198797 11044030 603657..604790 1 NC_015942.1 SMART: Heat shock protein DnaJ, N-terminal; TIGRFAM: Chaperone DnaJ; KEGG: afr:AFE_2664 chaperone protein DnaJ; HAMAP: Chaperone protein dnaJ; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; Heat shock protein DnaJ, cysteine-rich region; chaperone protein dnaJ 604790 11044030 Acife_0593 Acidithiobacillus ferrivorans SS3 chaperone protein dnaJ YP_004783123.1 603657 D 743299 CDS YP_004783124.1 344198798 11041818 604790..605620 1 NC_015942.1 TIGRFAM: Dihydrodipicolinate reductase, bacterial/plant; HAMAP: Dihydrodipicolinate reductase; KEGG: afr:AFE_2663 dihydrodipicolinate reductase; PFAM: Dihydrodipicolinate reductase; dihydrodipicolinate reductase 605620 11041818 Acife_0594 Acidithiobacillus ferrivorans SS3 dihydrodipicolinate reductase YP_004783124.1 604790 D 743299 CDS YP_004783125.1 344198799 11041819 605650..605964 1 NC_015942.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: afr:AFE_2662 antibiotic biosynthesis monooxygenase family protein; antibiotic biosynthesis monooxygenase 605964 11041819 Acife_0595 Acidithiobacillus ferrivorans SS3 antibiotic biosynthesis monooxygenase YP_004783125.1 605650 D 743299 CDS YP_004783126.1 344198800 11044031 605980..607056 1 NC_015942.1 PFAM: ATPase-like, ParA/MinD; KEGG: afr:AFE_2661 Mrp protein; ParA/MinD ATPase-like protein 607056 11044031 Acife_0596 Acidithiobacillus ferrivorans SS3 ParA/MinD ATPase-like protein YP_004783126.1 605980 D 743299 CDS YP_004783127.1 344198801 11041820 607086..607652 1 NC_015942.1 KEGG: afr:AFE_2660 deoxycytidine triphosphate deaminase; TIGRFAM: Deoxycytidine triphosphate deaminase; HAMAP: Deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase 607652 11041820 Acife_0597 Acidithiobacillus ferrivorans SS3 deoxycytidine triphosphate deaminase YP_004783127.1 607086 D 743299 CDS YP_004783128.1 344198802 11041821 complement(607660..608736) 1 NC_015942.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; KEGG: dba:Dbac_3337 NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase/NADH oxidase 608736 11041821 Acife_0598 Acidithiobacillus ferrivorans SS3 NADH:flavin oxidoreductase/NADH oxidase YP_004783128.1 607660 R 743299 CDS YP_004783129.1 344198803 11044032 complement(608887..610308) 1 NC_015942.1 PFAM: Amino acid permease-associated region; KEGG: afr:AFE_2659 amino acid permease family protein; amino acid permease-associated protein 610308 11044032 Acife_0599 Acidithiobacillus ferrivorans SS3 amino acid permease-associated protein YP_004783129.1 608887 R 743299 CDS YP_004783130.1 344198804 11041823 611322..611789 1 NC_015942.1 KEGG: sfr:Sfri_2035 hypothetical protein; hypothetical protein 611789 11041823 Acife_0601 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783130.1 611322 D 743299 CDS YP_004783131.1 344198805 11041824 complement(611808..612593) 1 NC_015942.1 PFAM: Major intrinsic protein; KEGG: cte:CT1472 major intrinsic protein; major intrinsic protein 612593 11041824 Acife_0602 Acidithiobacillus ferrivorans SS3 major intrinsic protein YP_004783131.1 611808 R 743299 CDS YP_004783132.1 344198806 11041825 complement(612609..612968) 1 NC_015942.1 KEGG: xac:XACa0008 hypothetical protein; hypothetical protein 612968 11041825 Acife_0603 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783132.1 612609 R 743299 CDS YP_004783133.1 344198807 11041826 complement(613047..613226) 1 NC_015942.1 KEGG: afr:AFE_1624 hypothetical protein; hypothetical protein 613226 11041826 Acife_0604 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783133.1 613047 R 743299 CDS YP_004783134.1 344198808 11041827 complement(613681..613995) 1 NC_015942.1 KEGG: afr:AFE_2811 lipoprotein, putative; lipoprotein 613995 11041827 Acife_0605 Acidithiobacillus ferrivorans SS3 lipoprotein YP_004783134.1 613681 R 743299 CDS YP_004783135.1 344198809 11044033 614572..617988 1 NC_015942.1 TIGRFAM: Trehalose synthase/alpha-amylase, N-terminal; PFAM: Glycosyl hydrolase, family 13, catalytic region; KEGG: nhl:Nhal_2491 trehalose synthase; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; trehalose synthase 617988 11044033 Acife_0606 Acidithiobacillus ferrivorans SS3 trehalose synthase YP_004783135.1 614572 D 743299 CDS YP_004783136.1 344198810 11041828 618002..620134 1 NC_015942.1 TIGRFAM: Glycogen debranching enzyme GlgX; PFAM: Glycoside hydrolase, family 13, N-terminal; Glycosyl hydrolase, family 13, catalytic region; KEGG: dak:DaAHT2_0475 glycogen debranching enzyme GlgX; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; glycogen debranching protein GlgX 620134 11041828 Acife_0607 Acidithiobacillus ferrivorans SS3 glycogen debranching protein GlgX YP_004783136.1 618002 D 743299 CDS YP_004783137.1 344198811 11041829 620131..621966 1 NC_015942.1 TIGRFAM: Malto-oligosyltrehalose trehalohydrolase; PFAM: Glycosyl hydrolase, family 13, catalytic region; Glycoside hydrolase, family 13, N-terminal; KEGG: nmu:Nmul_A1403 alpha amylase, catalytic region; SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; malto-oligosyltrehalose trehalohydrolase 621966 11041829 Acife_0608 Acidithiobacillus ferrivorans SS3 malto-oligosyltrehalose trehalohydrolase YP_004783137.1 620131 D 743299 CDS YP_004783138.1 344198812 11041830 621963..627101 1 NC_015942.1 SMART: Glycosyl hydrolase, family 13, subfamily, catalytic region; TIGRFAM: Malto-oligosyltrehalose synthase; Glycoside hydrolase, family 77; KEGG: nmu:Nmul_A1402 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; PFAM: Glycoside hydrolase, family 77; Glycosyl hydrolase, family 13, catalytic region; malto-oligosyltrehalose synthase 627101 11041830 Acife_0609 Acidithiobacillus ferrivorans SS3 malto-oligosyltrehalose synthase YP_004783138.1 621963 D 743299 CDS YP_004783139.1 344198813 11044034 complement(627230..627490) 1 NC_015942.1 KEGG: afe:Lferr_2071 hypothetical protein; hypothetical protein 627490 11044034 Acife_0611 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783139.1 627230 R 743299 CDS YP_004783140.1 344198814 11041832 complement(627495..627623) 1 NC_015942.1 hypothetical protein 627623 11041832 Acife_0612 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783140.1 627495 R 743299 CDS YP_004783141.1 344198815 11041833 complement(627836..628573) 1 NC_015942.1 PFAM: Cytochrome c1; KEGG: afr:AFE_3111 ubiquinol--cytochrome c reductase, cytochrome c1 subunit; cytochrome c1 628573 11041833 Acife_0613 Acidithiobacillus ferrivorans SS3 cytochrome c1 YP_004783141.1 627836 R 743299 CDS YP_004783142.1 344198816 11041834 complement(628570..629778) 1 NC_015942.1 PFAM: Cytochrome b/b6, N-terminal; Cytochrome b/b6, C-terminal; KEGG: afr:AFE_3110 ubiquinol--cytochrome c reductase, cytochrome b subunit; cytochrome b/b6 domain-containing protein 629778 11041834 Acife_0614 Acidithiobacillus ferrivorans SS3 cytochrome b/b6 domain-containing protein YP_004783142.1 628570 R 743299 CDS YP_004783143.1 344198817 11041835 complement(629806..630426) 1 NC_015942.1 KEGG: afr:AFE_3109 ubiquinol--cytochrome c reductase, iron-sulfur subunit; TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; Twin-arginine translocation pathway, signal sequence; PFAM: Ubiquitinol-cytochrome C reductase, Fe-S subunit, TAT signal; Rieske [2Fe-2S] iron-sulphur domain; ubiquinol-cytochrome c reductase, iron-sulfur subunit 630426 11041835 Acife_0615 Acidithiobacillus ferrivorans SS3 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_004783143.1 629806 R 743299 CDS YP_004783144.1 344198818 11041836 complement(630524..631312) 1 NC_015942.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_3108 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 631312 11041836 Acife_0616 Acidithiobacillus ferrivorans SS3 short-chain dehydrogenase/reductase SDR YP_004783144.1 630524 R 743299 CDS YP_004783145.1 344198819 11044035 complement(631305..632117) 1 NC_015942.1 PFAM: Cytochrome c, class I; KEGG: afe:Lferr_2705 cytochrome c class I; cytochrome c class I 632117 11044035 Acife_0617 Acidithiobacillus ferrivorans SS3 cytochrome c class I YP_004783145.1 631305 R 743299 CDS YP_004783146.1 344198820 11041837 complement(632154..632318) 1 NC_015942.1 hypothetical protein 632318 11041837 Acife_0618 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783146.1 632154 R 743299 CDS YP_004783147.1 344198821 11041838 complement(632671..633108) 1 NC_015942.1 hypothetical protein 633108 11041838 Acife_0619 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783147.1 632671 R 743299 CDS YP_004783148.1 344198822 11044036 complement(633299..634000) 1 NC_015942.1 KEGG: afr:AFE_0956 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 634000 11044036 Acife_0620 Acidithiobacillus ferrivorans SS3 metallo-beta-lactamase family protein YP_004783148.1 633299 R 743299 CDS YP_004783149.1 344198823 11041839 complement(634171..635133) 1 NC_015942.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_0699 sulfur assimilation transcriptional regulator, LysR family; LysR family transcriptional regulator 635133 11041839 Acife_0621 Acidithiobacillus ferrivorans SS3 LysR family transcriptional regulator YP_004783149.1 634171 R 743299 CDS YP_004783150.1 344198824 11041840 635347..636438 1 NC_015942.1 KEGG: afr:AFE_0419 transaldolase; TIGRFAM: Transaldolase subfamily; PFAM: Transaldolase; transaldolase 636438 11041840 Acife_0622 Acidithiobacillus ferrivorans SS3 transaldolase YP_004783150.1 635347 D 743299 CDS YP_004783151.1 344198825 11044037 complement(636469..637242) 1 NC_015942.1 KEGG: afr:AFE_0420 enoyl-(acyl-carrier-protein) reductase; enoyl-ACP reductase 637242 11044037 Acife_0623 Acidithiobacillus ferrivorans SS3 enoyl-ACP reductase YP_004783151.1 636469 R 743299 CDS YP_004783152.1 344198826 11041841 complement(637266..639077) 1 NC_015942.1 KEGG: afr:AFE_0421 membrane-bound lytic murein transglycosylase D; PFAM: Lytic transglycosylase-like, catalytic; Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding Lysin subgroup; lytic transglycosylase 639077 11041841 Acife_0624 Acidithiobacillus ferrivorans SS3 lytic transglycosylase YP_004783152.1 637266 R 743299 CDS YP_004783153.1 344198827 11041842 639342..640742 1 NC_015942.1 KEGG: afr:AFE_0422 glutamyl-tRNA synthetase; TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-tRNA synthetase 640742 11041842 Acife_0625 Acidithiobacillus ferrivorans SS3 glutamyl-tRNA synthetase YP_004783153.1 639342 D 743299 CDS YP_004783154.1 344198828 11041843 640855..642792 1 NC_015942.1 KEGG: afr:AFE_0423 aconitate hydratase; TIGRFAM: Aconitase, putative; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; Aconitase A/isopropylmalate dehydratase small subunit, swivel; aconitate hydratase 642792 11041843 Acife_0626 Acidithiobacillus ferrivorans SS3 aconitate hydratase YP_004783154.1 640855 D 743299 CDS YP_004783155.1 344198829 11041844 642789..644081 1 NC_015942.1 KEGG: afe:Lferr_0586 isocitrate dehydrogenase, NADP-dependent; TIGRFAM: Isocitrate dehydrogenase NADP-dependent, prokaryotic; PFAM: Isocitrate/isopropylmalate dehydrogenase; isocitrate dehydrogenase, NADP-dependent 644081 11041844 Acife_0627 Acidithiobacillus ferrivorans SS3 isocitrate dehydrogenase, NADP-dependent YP_004783155.1 642789 D 743299 CDS YP_004783156.1 344198830 11044038 644091..645254 1 NC_015942.1 TIGRFAM: Succinyl-CoA synthetase, beta subunit; HAMAP: Succinyl-CoA ligase [ADP-forming] subunit beta; KEGG: afr:AFE_0425 succinyl-CoA synthase, beta subunit; PFAM: ATP-grasp fold, succinyl-CoA synthetase-type; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA ligase (ADP-forming) subunit beta 645254 11044038 Acife_0628 Acidithiobacillus ferrivorans SS3 succinyl-CoA ligase (ADP-forming) subunit beta YP_004783156.1 644091 D 743299 CDS YP_004783157.1 344198831 11044039 645256..645600 1 NC_015942.1 KEGG: afr:AFE_0426 hypothetical protein; hypothetical protein 645600 11044039 Acife_0629 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783157.1 645256 D 743299 CDS YP_004783158.1 344198832 11041845 645597..646469 1 NC_015942.1 KEGG: afr:AFE_0427 succinyl-CoA synthetase, alpha subunit; TIGRFAM: Succinyl-CoA ligase, alpha subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA-binding; succinyl-CoA synthetase subunit alpha 646469 11041845 Acife_0630 Acidithiobacillus ferrivorans SS3 succinyl-CoA synthetase subunit alpha YP_004783158.1 645597 D 743299 CDS YP_004783159.1 344198833 11041846 646469..648118 1 NC_015942.1 KEGG: afr:AFE_0428 glutamine-dependent NAD+ synthetase; TIGRFAM: NAD+ synthase; PFAM: NAD+ synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthetase 648118 11041846 Acife_0631 Acidithiobacillus ferrivorans SS3 NAD+ synthetase YP_004783159.1 646469 D 743299 CDS YP_004783160.1 344198834 11044040 648115..648453 1 NC_015942.1 PFAM: Nitrogen regulatory protein PII; KEGG: afr:AFE_0429 nitrogen regulatory protein P-II 1; nitrogen regulatory protein P-II 648453 11044040 Acife_0632 Acidithiobacillus ferrivorans SS3 nitrogen regulatory protein P-II YP_004783160.1 648115 D 743299 CDS YP_004783161.1 344198835 11041847 complement(648498..649250) 1 NC_015942.1 TIGRFAM: Outer membrane assembly lipoprotein YfiO; KEGG: afr:AFE_0430 competence lipoprotein ComL, putative; outer membrane assembly lipoprotein YfiO 649250 11041847 Acife_0633 Acidithiobacillus ferrivorans SS3 outer membrane assembly lipoprotein YfiO YP_004783161.1 648498 R 743299 CDS YP_004783162.1 344198836 11044041 649279..650238 1 NC_015942.1 TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: afr:AFE_0431 ribosomal large subunit pseudouridine synthase D; SMART: RNA-binding S4; RluA family pseudouridine synthase 650238 11044041 Acife_0634 Acidithiobacillus ferrivorans SS3 RluA family pseudouridine synthase YP_004783162.1 649279 D 743299 CDS YP_004783163.1 344198837 11041848 650219..650980 1 NC_015942.1 KEGG: afe:Lferr_0594 hypothetical protein; TIGRFAM: Multi-copper polyphenol oxidoreductase, laccase; PFAM: Multi-copper polyphenol oxidoreductase, laccase; multi-copper polyphenol oxidoreductase, laccase 650980 11041848 Acife_0635 Acidithiobacillus ferrivorans SS3 multi-copper polyphenol oxidoreductase, laccase YP_004783163.1 650219 D 743299 CDS YP_004783164.1 344198838 11041849 650982..651530 1 NC_015942.1 KEGG: afr:AFE_0433 dioxygenase, ARD/ARD' family; HAMAP: Acireductone dioxygenase; PFAM: Acireductone dioxygenase, ARD; Acireductone dioxygenase 651530 11041849 Acife_0636 Acidithiobacillus ferrivorans SS3 Acireductone dioxygenase YP_004783164.1 650982 D 743299 CDS YP_004783165.1 344198839 11041850 651527..652699 1 NC_015942.1 PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; KEGG: afr:AFE_0434 ribulose bisphosphate carboxylase, large subunit 2; ribulose bisphosphate carboxylase large chain 652699 11041850 Acife_0637 Acidithiobacillus ferrivorans SS3 ribulose bisphosphate carboxylase large chain YP_004783165.1 651527 D 743299 CDS YP_004783166.1 344198840 11041851 652684..653352 1 NC_015942.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: afe:Lferr_0597 haloacid dehalogenase domain-containing protein hydrolase; haloacid dehalogenase domain-containing protein hydrolase 653352 11041851 Acife_0638 Acidithiobacillus ferrivorans SS3 haloacid dehalogenase domain-containing protein hydrolase YP_004783166.1 652684 D 743299 CDS YP_004783167.1 344198841 11041852 653342..653962 1 NC_015942.1 TIGRFAM: Methylthioribulose-1-phosphate dehydratase; HAMAP: Methylthioribulose-1-phosphate dehydratase; KEGG: afr:AFE_0436 aldolase, class II; PFAM: Class II aldolase/adducin, N-terminal; methylthioribulose-1-phosphate dehydratase 653962 11041852 Acife_0639 Acidithiobacillus ferrivorans SS3 methylthioribulose-1-phosphate dehydratase YP_004783167.1 653342 D 743299 CDS YP_004783168.1 344198842 11041853 653964..654485 1 NC_015942.1 PFAM: Amino acid-binding ACT; KEGG: afr:AFE_0437 ACT domain protein; amino acid-binding ACT domain-containing protein 654485 11041853 Acife_0640 Acidithiobacillus ferrivorans SS3 amino acid-binding ACT domain-containing protein YP_004783168.1 653964 D 743299 CDS YP_004783169.1 344198843 11044042 654485..654988 1 NC_015942.1 TIGRFAM: Formylmethionine deformylase; HAMAP: Formylmethionine deformylase; KEGG: afr:AFE_0438 polypeptide deformylase; PFAM: Formylmethionine deformylase; peptide deformylase 654988 11044042 Acife_0641 Acidithiobacillus ferrivorans SS3 peptide deformylase YP_004783169.1 654485 D 743299 CDS YP_004783170.1 344198844 11041854 655463..656170 1 NC_015942.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: afr:AFE_0768 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 656170 11041854 Acife_0642 Acidithiobacillus ferrivorans SS3 MotA/TolQ/ExbB proton channel YP_004783170.1 655463 D 743299 CDS YP_004783171.1 344198845 11041855 656218..656616 1 NC_015942.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: afr:AFE_0769 biopolymer transport protein, ExbD/TolR family; biopolymer transport protein ExbD/TolR 656616 11041855 Acife_0643 Acidithiobacillus ferrivorans SS3 biopolymer transport protein ExbD/TolR YP_004783171.1 656218 D 743299 CDS YP_004783172.1 344198846 11041856 656707..657459 1 NC_015942.1 TIGRFAM: TonB, C-terminal; KEGG: afe:Lferr_0913 TonB family protein; TonB family protein 657459 11041856 Acife_0644 Acidithiobacillus ferrivorans SS3 TonB family protein YP_004783172.1 656707 D 743299 CDS YP_004783173.1 344198847 11041857 657518..658921 1 NC_015942.1 PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: afr:AFE_0771 cytosine/purines/uracil/thiamine/allantoin permease family protein; cytosine/purines uracil thiamine allantoin permease 658921 11041857 Acife_0645 Acidithiobacillus ferrivorans SS3 cytosine/purines uracil thiamine allantoin permease YP_004783173.1 657518 D 743299 CDS YP_004783174.1 344198848 11041858 658933..660168 1 NC_015942.1 PFAM: Amidohydrolase 1; KEGG: afr:AFE_0772 guanine deaminase, putative; amidohydrolase 660168 11041858 Acife_0646 Acidithiobacillus ferrivorans SS3 amidohydrolase YP_004783174.1 658933 D 743299 CDS YP_004783175.1 344198849 11041859 660217..661257 1 NC_015942.1 TIGRFAM: Adenosine deaminase; HAMAP: Adenosine deaminase; KEGG: afr:AFE_0773 adenosine deaminase; PFAM: Adenosine/AMP deaminase; adenosine deaminase 661257 11041859 Acife_0647 Acidithiobacillus ferrivorans SS3 adenosine deaminase YP_004783175.1 660217 D 743299 CDS YP_004783176.1 344198850 11044043 661284..662285 1 NC_015942.1 PFAM: Purine nucleoside permease; KEGG: afe:Lferr_0917 purine nucleoside permease-like protein; purine nucleoside permease 662285 11044043 Acife_0648 Acidithiobacillus ferrivorans SS3 purine nucleoside permease YP_004783176.1 661284 D 743299 CDS YP_004783177.1 344198851 11041860 662347..664608 1 NC_015942.1 PFAM: Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding; Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead; KEGG: afr:AFE_0775 xanthine dehydrogenase, molybdenum-binding subunit, putative; aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein 664608 11041860 Acife_0649 Acidithiobacillus ferrivorans SS3 aldehyde oxidase and xanthine dehydrogenase molybdopterin binding protein YP_004783177.1 662347 D 743299 CDS YP_004783178.1 344198852 11041861 664605..665066 1 NC_015942.1 PFAM: [2Fe-2S]-binding; Ferredoxin; KEGG: afr:AFE_0776 xanthine dehydrogenase, iron-sulfur binding subunit, putative; (2Fe-2S)-binding domain-containing protein 665066 11041861 Acife_0650 Acidithiobacillus ferrivorans SS3 (2Fe-2S)-binding domain-containing protein YP_004783178.1 664605 D 743299 CDS YP_004783179.1 344198853 11041862 665059..665925 1 NC_015942.1 PFAM: Molybdopterin dehydrogenase, FAD-binding; KEGG: afr:AFE_0777 xanthine dehydrogenase, FAD-binding protein, putative; FAD-binding molybdopterin dehydrogenase 665925 11041862 Acife_0651 Acidithiobacillus ferrivorans SS3 FAD-binding molybdopterin dehydrogenase YP_004783179.1 665059 D 743299 CDS YP_004783180.1 344198854 11041863 665929..666513 1 NC_015942.1 KEGG: afr:AFE_0778 hypothetical protein; hypothetical protein 666513 11041863 Acife_0652 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783180.1 665929 D 743299 CDS YP_004783181.1 344198855 11044044 666532..667623 1 NC_015942.1 KEGG: afr:AFE_0779 cyanuric acid amidohydrolase; TIGRFAM: Amidohydrolase ring-opening, AtzD/TrzD; PFAM: Amidohydrolase ring-opening, AtzD/TrzD; ring-opening amidohydrolase 667623 11044044 Acife_0653 Acidithiobacillus ferrivorans SS3 ring-opening amidohydrolase YP_004783181.1 666532 D 743299 CDS YP_004783182.1 344198856 11041864 667620..668561 1 NC_015942.1 PFAM: XdhC- CoxI; KEGG: afr:AFE_0780 xanthine dehydrogenase accessory factor, putative; XshC-Cox1-family protein 668561 11041864 Acife_0654 Acidithiobacillus ferrivorans SS3 XshC-Cox1-family protein YP_004783182.1 667620 D 743299 CDS YP_004783183.1 344198857 11041865 668578..668778 1 NC_015942.1 KEGG: afr:AFE_0781 hypothetical protein; hypothetical protein 668778 11041865 Acife_0655 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783183.1 668578 D 743299 CDS YP_004783184.1 344198858 11041866 668775..670172 1 NC_015942.1 KEGG: afr:AFE_0782 amidohydrolase, AtzE family; TIGRFAM: Amidohydrolase, AtzE type; PFAM: Amidase; amidohydrolase, AtzE family 670172 11041866 Acife_0656 Acidithiobacillus ferrivorans SS3 amidohydrolase, AtzE family YP_004783184.1 668775 D 743299 CDS YP_004783185.1 344198859 11041867 670186..670572 1 NC_015942.1 KEGG: afr:AFE_0783 hypothetical protein; hypothetical protein 670572 11041867 Acife_0657 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783185.1 670186 D 743299 CDS YP_004783186.1 344198860 11041868 670581..671189 1 NC_015942.1 KEGG: afr:AFE_0784 hypothetical protein; hypothetical protein 671189 11041868 Acife_0658 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783186.1 670581 D 743299 CDS YP_004783187.1 344198861 11041869 671186..672805 1 NC_015942.1 KEGG: afr:AFE_0785 gamma-glutamyltranspeptidase; TIGRFAM: Gamma-glutamyltranspeptidase; PFAM: Gamma-glutamyltranspeptidase; gamma-glutamyltransferase 672805 11041869 Acife_0659 Acidithiobacillus ferrivorans SS3 gamma-glutamyltransferase YP_004783187.1 671186 D 743299 CDS YP_004783188.1 344198862 11041870 complement(672839..673759) 1 NC_015942.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_0761 transcriptional regulator, LysR family; LysR family transcriptional regulator 673759 11041870 Acife_0660 Acidithiobacillus ferrivorans SS3 LysR family transcriptional regulator YP_004783188.1 672839 R 743299 CDS YP_004783189.1 344198863 11044045 674034..676370 1 NC_015942.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: afr:AFE_0763 TonB-dependent receptor, putative; TonB-dependent receptor 676370 11044045 Acife_0661 Acidithiobacillus ferrivorans SS3 TonB-dependent receptor YP_004783189.1 674034 D 743299 CDS YP_004783190.1 344198864 11041871 676548..677921 1 NC_015942.1 PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: mse:Msed_1135 permease for cytosine/purine, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 677921 11041871 Acife_0662 Acidithiobacillus ferrivorans SS3 cytosine/purines uracil thiamine allantoin permease YP_004783190.1 676548 D 743299 CDS YP_004783191.1 344198865 11041872 677918..678364 1 NC_015942.1 KEGG: gau:GAU_1451 cytidine deaminase; TIGRFAM: Cytidine deaminase, homotetrameric; PFAM: CMP/dCMP deaminase, zinc-binding; cytidine deaminase 678364 11041872 Acife_0663 Acidithiobacillus ferrivorans SS3 cytidine deaminase YP_004783191.1 677918 D 743299 CDS YP_004783192.1 344198866 11041873 678741..679751 1 NC_015942.1 KEGG: shl:Shal_1632 purine phosphorylase family 1; hypothetical protein 679751 11041873 Acife_0664 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783192.1 678741 D 743299 CDS YP_004783193.1 344198867 11041874 679911..682274 1 NC_015942.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: afr:AFE_3229 TonB-dependent receptor; TonB-dependent receptor 682274 11041874 Acife_0665 Acidithiobacillus ferrivorans SS3 TonB-dependent receptor YP_004783193.1 679911 D 743299 CDS YP_004783194.1 344198868 11044046 682480..682875 1 NC_015942.1 manually curated; hypothetical protein 682875 11044046 Acife_0666 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783194.1 682480 D 743299 CDS YP_004783195.1 344198869 11041875 683106..685919 1 NC_015942.1 PFAM: SMP-30/Gluconolaconase/LRE-like region; KEGG: afr:AFE_3230 hypothetical protein; SMP-30/gluconolaconase/LRE-like region-containing protein 685919 11041875 Acife_0667 Acidithiobacillus ferrivorans SS3 SMP-30/gluconolaconase/LRE-like region-containing protein YP_004783195.1 683106 D 743299 CDS YP_004783196.1 344198870 11044047 686101..688215 1 NC_015942.1 PFAM: DNA methylase, adenine-specific; KEGG: tcx:Tcr_0332 N-6 DNA methylase; N-6 DNA methylase 688215 11044047 Acife_0668 Acidithiobacillus ferrivorans SS3 N-6 DNA methylase YP_004783196.1 686101 D 743299 CDS YP_004783197.1 344198871 11041876 688212..689414 1 NC_015942.1 PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: rba:RB11377 polypeptide HsdS; restriction modification system DNA specificity domain-containing protein 689414 11041876 Acife_0669 Acidithiobacillus ferrivorans SS3 restriction modification system DNA specificity domain-containing protein YP_004783197.1 688212 D 743299 CDS YP_004783198.1 344198872 11041877 689489..690967 1 NC_015942.1 KEGG: axy:AXYL_03767 hypothetical protein; hypothetical protein 690967 11041877 Acife_0670 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783198.1 689489 D 743299 CDS YP_004783199.1 344198873 11041878 690967..691926 1 NC_015942.1 KEGG: cbt:CLH_2146 hypothetical protein; hypothetical protein 691926 11041878 Acife_0671 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783199.1 690967 D 743299 CDS YP_004783200.1 344198874 11041879 691904..692065 1 NC_015942.1 hypothetical protein 692065 11041879 Acife_0672 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783200.1 691904 D 743299 CDS YP_004783201.1 344198875 11044048 692075..692296 1 NC_015942.1 KEGG: hip:CGSHiEE_05075 hypothetical protein; hypothetical protein 692296 11044048 Acife_0673 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783201.1 692075 D 743299 CDS YP_004783202.1 344198876 11041880 692379..693389 1 NC_015942.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: aeh:Mlg_1123 death-on-curing protein; filamentation induced by cAMP protein Fic 693389 11041880 Acife_0674 Acidithiobacillus ferrivorans SS3 filamentation induced by cAMP protein Fic YP_004783202.1 692379 D 743299 CDS YP_004783203.1 344198877 11041881 693386..696622 1 NC_015942.1 TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicase, N-terminal; HsdR family type I site-specific deoxyribonuclease 696622 11041881 Acife_0675 Acidithiobacillus ferrivorans SS3 HsdR family type I site-specific deoxyribonuclease YP_004783203.1 693386 D 743299 CDS YP_004783204.1 344198878 11041882 complement(696822..697157) 1 NC_015942.1 KEGG: xac:XACb0032 hypothetical protein; hypothetical protein 697157 11041882 Acife_0676 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783204.1 696822 R 743299 CDS YP_004783205.1 344198879 11041883 complement(697154..697369) 1 NC_015942.1 KEGG: alv:Alvin_3091 hypothetical protein; hypothetical protein 697369 11041883 Acife_0677 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783205.1 697154 R 743299 CDS YP_004783206.1 344198880 11044049 complement(697640..698146) 1 NC_015942.1 KEGG: afr:AFE_0443 hypothetical protein; hypothetical protein 698146 11044049 Acife_0678 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783206.1 697640 R 743299 CDS YP_004783207.1 344198881 11041884 complement(698146..698478) 1 NC_015942.1 KEGG: afr:AFE_0444 hypothetical protein; hypothetical protein 698478 11041884 Acife_0679 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783207.1 698146 R 743299 CDS YP_004783208.1 344198882 11044050 complement(698543..699439) 1 NC_015942.1 KEGG: afr:AFE_0445 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 699439 11044050 Acife_0680 Acidithiobacillus ferrivorans SS3 UTP-glucose-1-phosphate uridylyltransferase YP_004783208.1 698543 R 743299 CDS YP_004783209.1 344198883 11041885 complement(699519..700214) 1 NC_015942.1 PFAM: Protein of unknown function DUF502; KEGG: afr:AFE_0446 hypothetical protein; hypothetical protein 700214 11041885 Acife_0681 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783209.1 699519 R 743299 CDS YP_004783210.1 344198884 11041886 complement(700287..701717) 1 NC_015942.1 KEGG: afr:AFE_0447 sigma-54 dependent DNA-binding response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; two component sigma-54 specific Fis family transcriptional regulator 701717 11041886 Acife_0682 Acidithiobacillus ferrivorans SS3 two component sigma-54 specific Fis family transcriptional regulator YP_004783210.1 700287 R 743299 CDS YP_004783211.1 344198885 11044051 complement(701674..702165) 1 NC_015942.1 KEGG: afr:AFE_0448 lipoprotein, putative; lipoprotein 702165 11044051 Acife_0683 Acidithiobacillus ferrivorans SS3 lipoprotein YP_004783211.1 701674 R 743299 CDS YP_004783212.1 344198886 11044052 complement(702165..703649) 1 NC_015942.1 KEGG: afr:AFE_0449 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; HAMP linker domain; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; integral membrane sensor signal transduction histidine kinase 703649 11044052 Acife_0684 Acidithiobacillus ferrivorans SS3 integral membrane sensor signal transduction histidine kinase YP_004783212.1 702165 R 743299 CDS YP_004783213.1 344198887 11041887 complement(703924..705600) 1 NC_015942.1 KEGG: afr:AFE_0450 DNA repair protein RecN; TIGRFAM: DNA recombination/repair protein RecN; PFAM: RecF/RecN/SMC protein, N-terminal; DNA repair protein RecN 705600 11041887 Acife_0685 Acidithiobacillus ferrivorans SS3 DNA repair protein RecN YP_004783213.1 703924 R 743299 CDS YP_004783214.1 344198888 11041888 complement(705600..706487) 1 NC_015942.1 KEGG: afr:AFE_0451 ATP-NAD kinase; HAMAP: inorganic polyphosphate/ATP-NAD kinase; PFAM: ATP-NAD/AcoX kinase; inorganic polyphosphate/ATP-NAD kinase 706487 11041888 Acife_0686 Acidithiobacillus ferrivorans SS3 inorganic polyphosphate/ATP-NAD kinase YP_004783214.1 705600 R 743299 CDS YP_004783215.1 344198889 11044053 complement(706555..707292) 1 NC_015942.1 TIGRFAM: Bordetella pertussis Bvg accessory factor; HAMAP: Type III pantothenate kinase; KEGG: afr:AFE_0452 transcriptional activator, putative, Baf family; PFAM: Bordetella pertussis Bvg accessory factor; putative Baf family transcriptional acitvator 707292 11044053 Acife_0687 Acidithiobacillus ferrivorans SS3 putative Baf family transcriptional acitvator YP_004783215.1 706555 R 743299 CDS YP_004783216.1 344198890 11041889 complement(707289..708230) 1 NC_015942.1 KEGG: afe:Lferr_0614 biotin/acetyl-CoA-carboxylase ligase; TIGRFAM: Biotin--acetyl-CoA-carboxylase ligase; PFAM: Biotin/lipoate A/B protein ligase; biotin/acetyl-CoA-carboxylase ligase 708230 11041889 Acife_0688 Acidithiobacillus ferrivorans SS3 biotin/acetyl-CoA-carboxylase ligase YP_004783216.1 707289 R 743299 CDS YP_004783217.1 344198891 11041890 complement(708211..709467) 1 NC_015942.1 TIGRFAM: Gamma-glutamyl phosphate reductase GPR; HAMAP: Glutamate-5-semialdehyde dehydrogenase; KEGG: afr:AFE_0454 gamma-glutamyl phosphate reductase; PFAM: Aldehyde dehydrogenase; gamma-glutamyl phosphate reductase 709467 11041890 Acife_0689 Acidithiobacillus ferrivorans SS3 gamma-glutamyl phosphate reductase YP_004783217.1 708211 R 743299 CDS YP_004783218.1 344198892 11041892 709993..710838 1 NC_015942.1 PFAM: TnsA endonuclease, N-terminal; KEGG: afe:Lferr_0222 TnsA endonuclease; TnsA endonuclease 710838 11041892 Acife_0691 Acidithiobacillus ferrivorans SS3 TnsA endonuclease YP_004783218.1 709993 D 743299 CDS YP_004783219.1 344198893 11041893 710842..713049 1 NC_015942.1 PFAM: Integrase, catalytic core; KEGG: afe:Lferr_0221 Tn7-like transposition protein B; integrase catalytic subunit 713049 11041893 Acife_0692 Acidithiobacillus ferrivorans SS3 integrase catalytic subunit YP_004783219.1 710842 D 743299 CDS YP_004783220.1 344198894 11041895 713346..714779 1 NC_015942.1 KEGG: rfr:Rfer_4034 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: Glucose-6-phosphate dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 714779 11041895 Acife_0694 Acidithiobacillus ferrivorans SS3 glucose-6-phosphate 1-dehydrogenase YP_004783220.1 713346 D 743299 CDS YP_004783221.1 344198895 11041896 715204..717714 1 NC_015942.1 KEGG: hna:Hneap_0924 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P type, cation/copper-transporter; Copper ion-binding; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; Heavy metal transport/detoxification protein; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase 717714 11041896 Acife_0695 Acidithiobacillus ferrivorans SS3 heavy metal translocating P-type ATPase YP_004783221.1 715204 D 743299 CDS YP_004783222.1 344198896 11041897 717742..718137 1 NC_015942.1 PFAM: Protein of unknown function DUF302; KEGG: afr:AFE_2447 hypothetical protein; hypothetical protein 718137 11041897 Acife_0696 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783222.1 717742 D 743299 CDS YP_004783223.1 344198897 11044054 718200..718406 1 NC_015942.1 PFAM: Heavy metal transport/detoxification protein; KEGG: afr:AFE_2448 heavy metal-binding protein, putative; heavy metal transport/detoxification protein 718406 11044054 Acife_0697 Acidithiobacillus ferrivorans SS3 heavy metal transport/detoxification protein YP_004783223.1 718200 D 743299 CDS YP_004783224.1 344198898 11041898 718427..718672 1 NC_015942.1 PFAM: Glutaredoxin; KEGG: afr:AFE_2449 hypothetical protein; glutaredoxin 718672 11041898 Acife_0698 Acidithiobacillus ferrivorans SS3 glutaredoxin YP_004783224.1 718427 D 743299 CDS YP_004783225.1 344198899 11041899 718888..719745 1 NC_015942.1 KEGG: dge:Dgeo_2559 hypothetical protein; hypothetical protein 719745 11041899 Acife_0699 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783225.1 718888 D 743299 CDS YP_004783226.1 344198900 11041900 complement(719851..720828) 1 NC_015942.1 KEGG: neu:NE0744 hypothetical protein; hypothetical protein 720828 11041900 Acife_0700 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783226.1 719851 R 743299 CDS YP_004783227.1 344198901 11041901 complement(721282..722139) 1 NC_015942.1 KEGG: mmi:MMAR_2604 hypothetical protein; hypothetical protein 722139 11041901 Acife_0701 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783227.1 721282 R 743299 CDS YP_004783228.1 344198902 11041902 complement(722218..722841) 1 NC_015942.1 PFAM: Resolvase, N-terminal; KEGG: gme:Gmet_3142 resolvase-like protein; resolvase domain-containing protein 722841 11041902 Acife_0702 Acidithiobacillus ferrivorans SS3 resolvase domain-containing protein YP_004783228.1 722218 R 743299 CDS YP_004783229.1 344198903 11041903 722980..726009 1 NC_015942.1 PFAM: Transposase, Tn3; KEGG: adn:Alide_4602 transposase Tn3 family protein; transposase Tn3 family protein 726009 11041903 Acife_0703 Acidithiobacillus ferrivorans SS3 transposase Tn3 family protein YP_004783229.1 722980 D 743299 CDS YP_004783230.1 344198904 11041904 726404..726613 1 NC_015942.1 hypothetical protein 726613 11041904 Acife_0705 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783230.1 726404 D 743299 CDS YP_004783231.1 344198905 11041906 complement(726845..727699) 1 NC_015942.1 KEGG: afr:AFE_0698 S-formylglutathione hydrolase; TIGRFAM: S-formylglutathione hydrolase; PFAM: Putative esterase; S-formylglutathione hydrolase 727699 11041906 Acife_0707 Acidithiobacillus ferrivorans SS3 S-formylglutathione hydrolase YP_004783231.1 726845 R 743299 CDS YP_004783232.1 344198906 11041907 complement(727699..728808) 1 NC_015942.1 KEGG: afr:AFE_0697 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 728808 11041907 Acife_0708 Acidithiobacillus ferrivorans SS3 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase YP_004783232.1 727699 R 743299 CDS YP_004783233.1 344198907 11044056 complement(728908..729492) 1 NC_015942.1 KEGG: afr:AFE_0696 glutathione-dependent formaldehyde-activating enzyme; TIGRFAM: S-(hydroxymethyl)glutathione synthase; PFAM: Glutathione-dependent formaldehyde-activating, GFA; S-(hydroxymethyl)glutathione synthase 729492 11044056 Acife_0709 Acidithiobacillus ferrivorans SS3 S-(hydroxymethyl)glutathione synthase YP_004783233.1 728908 R 743299 CDS YP_004783234.1 344198908 11041908 complement(729948..732134) 1 NC_015942.1 KEGG: afe:Lferr_0842 fis family sigma-54 specific transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; Fis family sigma-54 specific transcriptional regulator 732134 11041908 Acife_0710 Acidithiobacillus ferrivorans SS3 Fis family sigma-54 specific transcriptional regulator YP_004783234.1 729948 R 743299 CDS YP_004783235.1 344198909 11041909 complement(732119..732568) 1 NC_015942.1 PFAM: Protein of unknown function DUF2442; KEGG: gbm:Gbem_0416 hypothetical protein; hypothetical protein 732568 11041909 Acife_0711 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783235.1 732119 R 743299 CDS YP_004783236.1 344198910 11041910 complement(733190..733780) 1 NC_015942.1 manually curated; KEGG: aaa:Acav_1435 hypothetical protein; hypothetical protein 733780 11041910 Acife_0712 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783236.1 733190 R 743299 CDS YP_004783237.1 344198911 11041911 complement(733770..734918) 1 NC_015942.1 KEGG: aaa:Acav_1436 hypothetical protein; PFAM: Protein of unknown function DUF955; Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; hypothetical protein 734918 11041911 Acife_0713 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783237.1 733770 R 743299 CDS YP_004783238.1 344198912 11044057 complement(734981..735889) 1 NC_015942.1 KEGG: bpy:Bphyt_0239 hypothetical protein; hypothetical protein 735889 11044057 Acife_0714 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783238.1 734981 R 743299 CDS YP_004783239.1 344198913 11041912 complement(735882..736568) 1 NC_015942.1 KEGG: bvi:Bcep1808_7631 hypothetical protein; hypothetical protein 736568 11041912 Acife_0715 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783239.1 735882 R 743299 CDS YP_004783240.1 344198914 11041913 complement(736595..737152) 1 NC_015942.1 hypothetical protein 737152 11041913 Acife_0716 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783240.1 736595 R 743299 CDS YP_004783241.1 344198915 11044058 738057..739019 1 NC_015942.1 PFAM: AntA/AntB antirepressor; KEGG: btr:Btr_0954 hypothetical protein; AntA/AntB antirepressor domain-containing protein 739019 11044058 Acife_0717 Acidithiobacillus ferrivorans SS3 AntA/AntB antirepressor domain-containing protein YP_004783241.1 738057 D 743299 CDS YP_004783242.1 344198916 11041914 739160..739609 1 NC_015942.1 hypothetical protein 739609 11041914 Acife_0718 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783242.1 739160 D 743299 CDS YP_004783243.1 344198917 11041915 739609..741876 1 NC_015942.1 PFAM: TRAG protein; KEGG: hna:Hneap_1649 TraG family protein; TRAG family protein 741876 11041915 Acife_0719 Acidithiobacillus ferrivorans SS3 TRAG family protein YP_004783243.1 739609 D 743299 CDS YP_004783244.1 344198918 11041916 741985..743493 1 NC_015942.1 PFAM: HipA-like, N-terminal; HipA-like, C-terminal; KEGG: rah:Rahaq_3819 HipA domain protein; HipA domain-containing protein 743493 11041916 Acife_0720 Acidithiobacillus ferrivorans SS3 HipA domain-containing protein YP_004783244.1 741985 D 743299 CDS YP_004783245.1 344198919 11041917 744025..744813 1 NC_015942.1 KEGG: gsu:GSU0959 hypothetical protein; hypothetical protein 744813 11041917 Acife_0721 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783245.1 744025 D 743299 CDS YP_004783246.1 344198920 11044059 complement(745359..746204) 1 NC_015942.1 KEGG: pat:Patl_2748 hypothetical protein; hypothetical protein 746204 11044059 Acife_0722 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783246.1 745359 R 743299 CDS YP_004783247.1 344198921 11041918 complement(746376..747482) 1 NC_015942.1 KEGG: afr:AFE_1752 hypothetical protein; hypothetical protein 747482 11041918 Acife_0723 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783247.1 746376 R 743299 CDS YP_004783248.1 344198922 11044060 complement(747621..748904) 1 NC_015942.1 PFAM: DNA-repair protein, UmuC-like; KEGG: afr:AFE_1751 UmuC protein; UMUC domain-containing protein DNA-repair protein 748904 11044060 Acife_0724 Acidithiobacillus ferrivorans SS3 UMUC domain-containing protein DNA-repair protein YP_004783248.1 747621 R 743299 CDS YP_004783249.1 344198923 11041919 complement(748912..749391) 1 NC_015942.1 PFAM: Peptidase S24/S26A/S26B, conserved region; KEGG: afr:AFE_1750 UmuD protein; peptidase S24/S26A/S26B 749391 11041919 Acife_0725 Acidithiobacillus ferrivorans SS3 peptidase S24/S26A/S26B YP_004783249.1 748912 R 743299 CDS YP_004783250.1 344198924 11041920 complement(749381..749620) 1 NC_015942.1 hypothetical protein 749620 11041920 Acife_0726 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783250.1 749381 R 743299 CDS YP_004783251.1 344198925 11044061 complement(749718..750401) 1 NC_015942.1 PFAM: Protein of unknown function DUF159; KEGG: afr:AFE_1749 hypothetical protein; hypothetical protein 750401 11044061 Acife_0727 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783251.1 749718 R 743299 CDS YP_004783252.1 344198926 11041921 750491..752674 1 NC_015942.1 KEGG: nha:Nham_2841 helicase RecD/TraA; TIGRFAM: DNA helicase, RecD/TraA type; SMART: ATPase, AAA+ type, core; Helix-hairpin-helix DNA-binding motif, class 1; RecD/TraA family helicase 752674 11041921 Acife_0728 Acidithiobacillus ferrivorans SS3 RecD/TraA family helicase YP_004783252.1 750491 D 743299 CDS YP_004783253.1 344198927 11041922 complement(753040..753993) 1 NC_015942.1 KEGG: cpc:Cpar_0666 hypothetical protein; hypothetical protein 753993 11041922 Acife_0729 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783253.1 753040 R 743299 CDS YP_004783254.1 344198928 11041923 754070..754390 1 NC_015942.1 manually curated; PFAM: Histone-like bacterial DNA-binding protein; KEGG: afr:AFE_1070 DNA-binding protein, HU family; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 754390 11041923 Acife_0730 Acidithiobacillus ferrivorans SS3 histone family protein DNA-binding protein YP_004783254.1 754070 D 743299 CDS YP_004783255.1 344198929 11044062 755124..755480 1 NC_015942.1 hypothetical protein 755480 11044062 Acife_0731 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783255.1 755124 D 743299 CDS YP_004783256.1 344198930 11041924 756389..756751 1 NC_015942.1 PFAM: Dynein light chain-related; KEGG: afr:AFE_2578 roadblock/LC7 domain protein; Roadblock/LC7 family protein 756751 11041924 Acife_0732 Acidithiobacillus ferrivorans SS3 Roadblock/LC7 family protein YP_004783256.1 756389 D 743299 CDS YP_004783257.1 344198931 11044063 756918..757466 1 NC_015942.1 KEGG: cts:Ctha_0396 hypothetical protein; hypothetical protein 757466 11044063 Acife_0733 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783257.1 756918 D 743299 CDS YP_004783258.1 344198932 11044064 757679..760336 1 NC_015942.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: afe:Lferr_1405 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase 760336 11044064 Acife_0734 Acidithiobacillus ferrivorans SS3 diguanylate cyclase/phosphodiesterase YP_004783258.1 757679 D 743299 CDS YP_004783259.1 344198933 11041925 760336..760647 1 NC_015942.1 PFAM: Nitrogen regulatory protein PII; KEGG: cti:RALTA_A0736 regulatory protein (p-ii) for nitrogen assimilation by glutamine synthetase (ATase); nitrogen regulatory protein P-II 760647 11041925 Acife_0735 Acidithiobacillus ferrivorans SS3 nitrogen regulatory protein P-II YP_004783259.1 760336 D 743299 CDS YP_004783260.1 344198934 11041926 760775..761137 1 NC_015942.1 PFAM: Dynein light chain-related; KEGG: afr:AFE_2578 roadblock/LC7 domain protein; Roadblock/LC7 family protein 761137 11041926 Acife_0736 Acidithiobacillus ferrivorans SS3 Roadblock/LC7 family protein YP_004783260.1 760775 D 743299 CDS YP_004783261.1 344198935 11044065 761168..761704 1 NC_015942.1 KEGG: gmc:GY4MC1_1878 methyl-accepting chemotaxis sensory transducer; hypothetical protein 761704 11044065 Acife_0737 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783261.1 761168 D 743299 CDS YP_004783262.1 344198936 11044066 complement(761991..762731) 1 NC_015942.1 KEGG: afr:AFE_1072 hypothetical protein; manually curated; PFAM: RES; RES domain-containing protein 762731 11044066 Acife_0738 Acidithiobacillus ferrivorans SS3 RES domain-containing protein YP_004783262.1 761991 R 743299 CDS YP_004783263.1 344198937 11041927 complement(762731..763123) 1 NC_015942.1 KEGG: afr:AFE_1071 hypothetical protein; hypothetical protein 763123 11041927 Acife_0739 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783263.1 762731 R 743299 CDS YP_004783264.1 344198938 11044067 763621..763830 1 NC_015942.1 hypothetical protein 763830 11044067 Acife_0740 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783264.1 763621 D 743299 CDS YP_004783265.1 344198939 11041928 763820..764203 1 NC_015942.1 manually curated; hypothetical protein 764203 11041928 Acife_0741 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783265.1 763820 D 743299 CDS YP_004783266.1 344198940 11041929 764310..764651 1 NC_015942.1 hypothetical protein 764651 11041929 Acife_0742 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783266.1 764310 D 743299 CDS YP_004783267.1 344198941 11041930 764769..765890 1 NC_015942.1 KEGG: afr:AFE_3189 hypothetical protein; hypothetical protein 765890 11041930 Acife_0743 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783267.1 764769 D 743299 CDS YP_004783268.1 344198942 11041931 765860..766363 1 NC_015942.1 KEGG: afe:Lferr_1541 hypothetical protein; hypothetical protein 766363 11041931 Acife_0744 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783268.1 765860 D 743299 CDS YP_004783269.1 344198943 11041932 766356..766493 1 NC_015942.1 hypothetical protein 766493 11041932 Acife_0745 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783269.1 766356 D 743299 CDS YP_004783270.1 344198944 11041933 complement(766476..766604) 1 NC_015942.1 hypothetical protein 766604 11041933 Acife_0746 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783270.1 766476 R 743299 CDS YP_004783271.1 344198945 11044068 766819..770508 1 NC_015942.1 KEGG: cmi:CMM_1110 hypothetical protein; hypothetical protein 770508 11044068 Acife_0747 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783271.1 766819 D 743299 CDS YP_004783272.1 344198946 11041934 770771..771145 1 NC_015942.1 KEGG: ava:Ava_C0048 hypothetical protein; hypothetical protein 771145 11041934 Acife_0748 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783272.1 770771 D 743299 CDS YP_004783273.1 344198947 11041935 771165..771701 1 NC_015942.1 KEGG: tmz:Tmz1t_2370 hypothetical protein; hypothetical protein 771701 11041935 Acife_0749 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783273.1 771165 D 743299 CDS YP_004783274.1 344198948 11041936 772034..772276 1 NC_015942.1 hypothetical protein 772276 11041936 Acife_0750 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783274.1 772034 D 743299 CDS YP_004783275.1 344198949 11041937 772590..773396 1 NC_015942.1 KEGG: pao:Pat9b_2156 hypothetical protein; hypothetical protein 773396 11041937 Acife_0751 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783275.1 772590 D 743299 CDS YP_004783276.1 344198950 11041938 773499..773774 1 NC_015942.1 KEGG: afr:AFE_1584 DNA-binding protein HU family protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 773774 11041938 Acife_0752 Acidithiobacillus ferrivorans SS3 histone family protein DNA-binding protein YP_004783276.1 773499 D 743299 CDS YP_004783277.1 344198951 11041939 773796..773897 1 NC_015942.1 PFAM: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 773897 11041939 Acife_0753 Acidithiobacillus ferrivorans SS3 histone family protein DNA-binding protein YP_004783277.1 773796 D 743299 CDS YP_004783278.1 344198952 11041940 774012..774749 1 NC_015942.1 PFAM: TnsA endonuclease, N-terminal; KEGG: afe:Lferr_0222 TnsA endonuclease; TnsA endonuclease 774749 11041940 Acife_0754 Acidithiobacillus ferrivorans SS3 TnsA endonuclease YP_004783278.1 774012 D 743299 CDS YP_004783279.1 344198953 11044069 774863..775240 1 NC_015942.1 KEGG: afe:Lferr_0221 Tn7-like transposition protein B; hypothetical protein 775240 11044069 Acife_0755 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783279.1 774863 D 743299 CDS YP_004783280.1 344198954 11041941 complement(775184..775762) 1 NC_015942.1 PFAM: Resolvase, N-terminal; KEGG: sus:Acid_6125 resolvase domain-containing protein; resolvase domain-containing protein 775762 11041941 Acife_0756 Acidithiobacillus ferrivorans SS3 resolvase domain-containing protein YP_004783280.1 775184 R 743299 CDS YP_004783281.1 344198955 11044070 775884..776543 1 NC_015942.1 PFAM: Plasmid pRiA4b ORF-3-like; KEGG: syp:SYNPCC7002_G0040 hypothetical protein; plasmid pRiA4b ORF-3 family protein 776543 11044070 Acife_0757 Acidithiobacillus ferrivorans SS3 plasmid pRiA4b ORF-3 family protein YP_004783281.1 775884 D 743299 CDS YP_004783282.1 344198956 11044071 776543..777973 1 NC_015942.1 KEGG: syp:SYNPCC7002_G0041 hypothetical protein; hypothetical protein 777973 11044071 Acife_0758 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783282.1 776543 D 743299 CDS YP_004783283.1 344198957 11041942 complement(777956..779506) 1 NC_015942.1 PFAM: Cytochrome c assembly protein, transmembrane region; KEGG: afr:AFE_0545 thiol:disulfide interchange protein DsbD; cytochrome c biogenesis protein transmembrane region 779506 11041942 Acife_0759 Acidithiobacillus ferrivorans SS3 cytochrome c biogenesis protein transmembrane region YP_004783283.1 777956 R 743299 CDS YP_004783284.1 344198958 11044072 complement(779607..780569) 1 NC_015942.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: pat:Patl_0274 redoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 780569 11044072 Acife_0760 Acidithiobacillus ferrivorans SS3 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_004783284.1 779607 R 743299 CDS YP_004783285.1 344198959 11041943 complement(780566..781198) 1 NC_015942.1 KEGG: mmb:Mmol_1963 RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit 781198 11041943 Acife_0761 Acidithiobacillus ferrivorans SS3 ECF subfamily RNA polymerase sigma-24 subunit YP_004783285.1 780566 R 743299 CDS YP_004783286.1 344198960 11041944 complement(781232..781696) 1 NC_015942.1 PFAM: Protein of unknown function DUF302; KEGG: dsh:Dshi_2075 hypothetical protein; hypothetical protein 781696 11041944 Acife_0762 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783286.1 781232 R 743299 CDS YP_004783287.1 344198961 11041945 781957..782244 1 NC_015942.1 PFAM: Transposase IS3/IS911; KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 782244 11041945 Acife_0763 Acidithiobacillus ferrivorans SS3 transposase IS3/IS911 family protein YP_004783287.1 781957 D 743299 CDS YP_004783288.1 344198962 11041946 782241..783125 1 NC_015942.1 KEGG: pna:Pnap_0429 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core; integrase catalytic subunit 783125 11041946 Acife_0764 Acidithiobacillus ferrivorans SS3 integrase catalytic subunit YP_004783288.1 782241 D 743299 CDS YP_004783289.1 344198963 11041947 complement(783183..783686) 1 NC_015942.1 KEGG: bgl:bglu_2g14420 disulfide isomerase/thiol-disulfide oxidase; hypothetical protein 783686 11041947 Acife_0765 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783289.1 783183 R 743299 CDS YP_004783290.1 344198964 11041948 complement(783808..784185) 1 NC_015942.1 KEGG: afr:AFE_2508 hypothetical protein; hypothetical protein 784185 11041948 Acife_0766 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783290.1 783808 R 743299 CDS YP_004783291.1 344198965 11044073 complement(784257..784970) 1 NC_015942.1 PFAM: Protein of unknown function DUF2063; KEGG: nha:Nham_4648 hypothetical protein; hypothetical protein 784970 11044073 Acife_0767 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783291.1 784257 R 743299 CDS YP_004783292.1 344198966 11041949 complement(784963..785841) 1 NC_015942.1 PFAM: Protein of unknown function DUF692; KEGG: pol:Bpro_4790 hypothetical protein; hypothetical protein 785841 11041949 Acife_0768 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783292.1 784963 R 743299 CDS YP_004783293.1 344198967 11041950 complement(785942..786229) 1 NC_015942.1 PFAM: Protein of unknown function DUF2282, transmembrane; KEGG: ppr:PBPRA3515 putative signal peptide protein; hypothetical protein 786229 11041950 Acife_0769 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783293.1 785942 R 743299 CDS YP_004783294.1 344198968 11041951 complement(786318..786806) 1 NC_015942.1 PFAM: DoxX; KEGG: reh:H16_A1816 hypothetical protein; DoxX family protein 786806 11041951 Acife_0770 Acidithiobacillus ferrivorans SS3 DoxX family protein YP_004783294.1 786318 R 743299 CDS YP_004783295.1 344198969 11041952 complement(786856..787335) 1 NC_015942.1 KEGG: shl:Shal_3553 hypothetical protein; hypothetical protein 787335 11041952 Acife_0771 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783295.1 786856 R 743299 CDS YP_004783296.1 344198970 11044074 complement(787346..787630) 1 NC_015942.1 PFAM: Protein of unknown function DUF2282, transmembrane; KEGG: llo:LLO_1725 hypothetical protein; hypothetical protein 787630 11044074 Acife_0772 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783296.1 787346 R 743299 CDS YP_004783297.1 344198971 11041953 complement(787808..788509) 1 NC_015942.1 hypothetical protein 788509 11041953 Acife_0773 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783297.1 787808 R 743299 CDS YP_004783298.1 344198972 11041954 complement(788499..788966) 1 NC_015942.1 manually curated; PFAM: HTH transcriptional regulator, MerR; KEGG: afr:AFE_2509 transcriptional regulator, MerR family; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator 788966 11041954 Acife_0774 Acidithiobacillus ferrivorans SS3 MerR family transcriptional regulator YP_004783298.1 788499 R 743299 CDS YP_004783299.1 344198973 11041955 complement(788970..789191) 1 NC_015942.1 hypothetical protein 789191 11041955 Acife_0775 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783299.1 788970 R 743299 CDS YP_004783300.1 344198974 11041959 complement(793384..794211) 1 NC_015942.1 PFAM: ATPase associated with various cellular activities, AAA-5; CbbQ/NirQ/NorQ C-terminal; KEGG: afr:AFE_2536 CbbQ/NirQ/NorQ/GpvN family protein; ATPase 794211 11041959 Acife_0780 Acidithiobacillus ferrivorans SS3 ATPase YP_004783300.1 793384 R 743299 CDS YP_004783301.1 344198975 11044076 complement(794208..794402) 1 NC_015942.1 hypothetical protein 794402 11044076 Acife_0781 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783301.1 794208 R 743299 CDS YP_004783302.1 344198976 11044077 complement(794477..794998) 1 NC_015942.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: nmu:Nmul_A2682 thioredoxin; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 794998 11044077 Acife_0782 Acidithiobacillus ferrivorans SS3 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_004783302.1 794477 R 743299 CDS YP_004783303.1 344198977 11041960 complement(795049..795642) 1 NC_015942.1 PFAM: Phosphoglycerate mutase; KEGG: afr:AFE_0155 phosphoglycerate mutase family protein; phosphoglycerate mutase 795642 11041960 Acife_0783 Acidithiobacillus ferrivorans SS3 phosphoglycerate mutase YP_004783303.1 795049 R 743299 CDS YP_004783304.1 344198978 11044078 complement(795644..797293) 1 NC_015942.1 KEGG: afr:AFE_2924 glucose-6-phosphate isomerase; HAMAP: Phosphoglucose isomerase (PGI); PFAM: Phosphoglucose isomerase (PGI); glucose-6-phosphate isomerase 797293 11044078 Acife_0784 Acidithiobacillus ferrivorans SS3 glucose-6-phosphate isomerase YP_004783304.1 795644 R 743299 CDS YP_004783305.1 344198979 11041961 complement(797326..798405) 1 NC_015942.1 KEGG: pna:Pnap_4495 transaldolase; TIGRFAM: Transaldolase subfamily; PFAM: Transaldolase; transaldolase 798405 11041961 Acife_0785 Acidithiobacillus ferrivorans SS3 transaldolase YP_004783305.1 797326 R 743299 CDS YP_004783306.1 344198980 11041963 complement(799221..800879) 1 NC_015942.1 KEGG: tbd:Tbd_1341 putative mercuric reductase; TIGRFAM: Mercuric reductase MerA; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; mercuric reductase 800879 11041963 Acife_0787 Acidithiobacillus ferrivorans SS3 mercuric reductase YP_004783306.1 799221 R 743299 CDS YP_004783307.1 344198981 11041964 complement(800916..801269) 1 NC_015942.1 PFAM: Heavy metal transport/detoxification protein; KEGG: pbr:PB2503_12404 mercuric transport protein periplasmic component; heavy metal transport/detoxification protein 801269 11041964 Acife_0788 Acidithiobacillus ferrivorans SS3 heavy metal transport/detoxification protein YP_004783307.1 800916 R 743299 CDS YP_004783308.1 344198982 11041965 complement(801304..801723) 1 NC_015942.1 PFAM: Mercuric transport protein MerT; KEGG: rme:Rmet_6345 mercuric ion transport protein MerT; Mercuric transport protein MerT 801723 11041965 Acife_0789 Acidithiobacillus ferrivorans SS3 Mercuric transport protein MerT YP_004783308.1 801304 R 743299 CDS YP_004783309.1 344198983 11044079 complement(802868..803872) 1 NC_015942.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; KEGG: afr:AFE_3161 D-isomer specific 2-hydroxyacid dehydrogenase family protein; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase 803872 11044079 Acife_0792 Acidithiobacillus ferrivorans SS3 NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase YP_004783309.1 802868 R 743299 CDS YP_004783310.1 344198984 11041968 complement(803895..805190) 1 NC_015942.1 TIGRFAM: Enolase; HAMAP: Enolase; KEGG: hna:Hneap_0970 enolase; PFAM: Enolase, C-terminal; Enolase, N-terminal; enolase 805190 11041968 Acife_0793 Acidithiobacillus ferrivorans SS3 enolase YP_004783310.1 803895 R 743299 CDS YP_004783311.1 344198985 11041969 complement(805202..806629) 1 NC_015942.1 KEGG: afe:Lferr_1478 pyruvate kinase; TIGRFAM: Pyruvate kinase; PFAM: Pyruvate kinase, barrel; Pyruvate kinase, alpha/beta; pyruvate kinase 806629 11041969 Acife_0794 Acidithiobacillus ferrivorans SS3 pyruvate kinase YP_004783311.1 805202 R 743299 CDS YP_004783312.1 344198986 11041970 complement(806626..807546) 1 NC_015942.1 PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: afr:AFE_1802 aldolase; deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase 807546 11041970 Acife_0795 Acidithiobacillus ferrivorans SS3 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_004783312.1 806626 R 743299 CDS YP_004783313.1 344198987 11041971 complement(807539..808936) 1 NC_015942.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: afr:AFE_1803 pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 808936 11041971 Acife_0796 Acidithiobacillus ferrivorans SS3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004783313.1 807539 R 743299 CDS YP_004783314.1 344198988 11041972 complement(808951..811458) 1 NC_015942.1 KEGG: hna:Hneap_0971 plasma-membrane proton-efflux P-type ATPase; TIGRFAM: ATPase, P-type, plasma-membrane proton-efflux; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; plasma-membrane proton-efflux P-type ATPase 811458 11041972 Acife_0797 Acidithiobacillus ferrivorans SS3 plasma-membrane proton-efflux P-type ATPase YP_004783314.1 808951 R 743299 CDS YP_004783315.1 344198989 11044080 complement(811899..813149) 1 NC_015942.1 PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; E3 binding; KEGG: afr:AFE_1811 2-oxo acid dehydrogenase, acyltransferase, putative; hypothetical protein 813149 11044080 Acife_0799 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783315.1 811899 R 743299 CDS YP_004783316.1 344198990 11041974 complement(813146..814138) 1 NC_015942.1 PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: afr:AFE_1812 dehydrogenase complex, E1 component, beta subunit, putative; transketolase central region 814138 11041974 Acife_0800 Acidithiobacillus ferrivorans SS3 transketolase central region YP_004783316.1 813146 R 743299 CDS YP_004783317.1 344198991 11041975 complement(814135..815199) 1 NC_015942.1 PFAM: Dehydrogenase, E1 component; KEGG: afr:AFE_1813 dehydrogenase complex, E1 component, alpha subunit, putative; dehydrogenase E1 component 815199 11041975 Acife_0801 Acidithiobacillus ferrivorans SS3 dehydrogenase E1 component YP_004783317.1 814135 R 743299 CDS YP_004783318.1 344198992 11041976 complement(815192..815542) 1 NC_015942.1 KEGG: afr:AFE_1814 alkylhydroperoxidase AhpD domain protein; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase like protein 815542 11041976 Acife_0802 Acidithiobacillus ferrivorans SS3 alkylhydroperoxidase like protein YP_004783318.1 815192 R 743299 CDS YP_004783319.1 344198993 11044081 complement(815696..816460) 1 NC_015942.1 KEGG: afr:AFE_1892 hypothetical protein; TIGRFAM: polyphosphate kinase 2; PFAM: Polyphosphate kinase 2; polyphosphate kinase 2 816460 11044081 Acife_0803 Acidithiobacillus ferrivorans SS3 polyphosphate kinase 2 YP_004783319.1 815696 R 743299 CDS YP_004783320.1 344198994 11041977 complement(816457..817662) 1 NC_015942.1 KEGG: afr:AFE_3250 phosphoglycerate kinase; HAMAP: Phosphoglycerate kinase; PFAM: Phosphoglycerate kinase; phosphoglycerate kinase 817662 11041977 Acife_0804 Acidithiobacillus ferrivorans SS3 phosphoglycerate kinase YP_004783320.1 816457 R 743299 CDS YP_004783321.1 344198995 11044082 complement(817678..818694) 1 NC_015942.1 KEGG: afr:AFE_3251 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: Glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain; glyceraldehyde-3-phosphate dehydrogenase, type I 818694 11044082 Acife_0805 Acidithiobacillus ferrivorans SS3 glyceraldehyde-3-phosphate dehydrogenase, type I YP_004783321.1 817678 R 743299 CDS YP_004783322.1 344198996 11041978 complement(819854..821920) 1 NC_015942.1 KEGG: afr:AFE_2439 copper-translocating P-type ATPase; TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; copper-translocating P-type ATPase 821920 11041978 Acife_0807 Acidithiobacillus ferrivorans SS3 copper-translocating P-type ATPase YP_004783322.1 819854 R 743299 CDS YP_004783323.1 344198997 11044084 complement(821936..822232) 1 NC_015942.1 hypothetical protein 822232 11044084 Acife_0808 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783323.1 821936 R 743299 CDS YP_004783324.1 344198998 11044085 complement(822406..823221) 1 NC_015942.1 PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; KEGG: afe:Lferr_2063 hypothetical protein; cyclopropane-fatty-acyl-phospholipid synthase 823221 11044085 Acife_0809 Acidithiobacillus ferrivorans SS3 cyclopropane-fatty-acyl-phospholipid synthase YP_004783324.1 822406 R 743299 CDS YP_004783325.1 344198999 11044086 823319..824635 1 NC_015942.1 PFAM: Outer membrane efflux protein; KEGG: afe:Lferr_0170 outer membrane efflux protein; outer membrane efflux protein 824635 11044086 Acife_0810 Acidithiobacillus ferrivorans SS3 outer membrane efflux protein YP_004783325.1 823319 D 743299 CDS YP_004783326.1 344199000 11044087 824632..826068 1 NC_015942.1 KEGG: afr:AFE_2433 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 826068 11044087 Acife_0811 Acidithiobacillus ferrivorans SS3 RND family efflux transporter MFP subunit YP_004783326.1 824632 D 743299 CDS YP_004783327.1 344199001 11041979 826061..829171 1 NC_015942.1 KEGG: afe:Lferr_0172 CzcA family heavy metal efflux pump; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump 829171 11041979 Acife_0812 Acidithiobacillus ferrivorans SS3 CzcA family heavy metal efflux pump YP_004783327.1 826061 D 743299 CDS YP_004783328.1 344199002 11041980 829197..829943 1 NC_015942.1 KEGG: afe:Lferr_0173 cytochrome b561; cytochrome b561 829943 11041980 Acife_0813 Acidithiobacillus ferrivorans SS3 cytochrome b561 YP_004783328.1 829197 D 743299 CDS YP_004783329.1 344199003 11041981 830071..830433 1 NC_015942.1 KEGG: afe:Lferr_0174 hypothetical protein; hypothetical protein 830433 11041981 Acife_0814 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783329.1 830071 D 743299 CDS YP_004783330.1 344199004 11041982 830551..830859 1 NC_015942.1 KEGG: afe:Lferr_2056 hypothetical protein; hypothetical protein 830859 11041982 Acife_0815 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783330.1 830551 D 743299 CDS YP_004783331.1 344199005 11041984 831492..831701 1 NC_015942.1 hypothetical protein 831701 11041984 Acife_0817 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783331.1 831492 D 743299 CDS YP_004783332.1 344199006 11041985 832160..832363 1 NC_015942.1 KEGG: afe:Lferr_0179 hypothetical protein; hypothetical protein 832363 11041985 Acife_0818 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783332.1 832160 D 743299 CDS YP_004783333.1 344199007 11044089 complement(833661..836756) 1 NC_015942.1 PFAM: Acriflavin resistance protein; KEGG: afe:Lferr_0183 acriflavin resistance protein; acriflavin resistance protein 836756 11044089 Acife_0822 Acidithiobacillus ferrivorans SS3 acriflavin resistance protein YP_004783333.1 833661 R 743299 CDS YP_004783334.1 344199008 11044090 complement(836798..837928) 1 NC_015942.1 KEGG: afe:Lferr_0184 hypothetical protein; hypothetical protein 837928 11044090 Acife_0823 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783334.1 836798 R 743299 CDS YP_004783335.1 344199009 11041988 complement(837925..839385) 1 NC_015942.1 PFAM: Outer membrane efflux protein; KEGG: afe:Lferr_0185 outer membrane efflux protein; outer membrane efflux protein 839385 11041988 Acife_0824 Acidithiobacillus ferrivorans SS3 outer membrane efflux protein YP_004783335.1 837925 R 743299 CDS YP_004783336.1 344199010 11044091 complement(839392..841398) 1 NC_015942.1 KEGG: afe:Lferr_0186 heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type, heavy metal translocating; ATPase, P-type, heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; heavy metal translocating P-type ATPase 841398 11044091 Acife_0825 Acidithiobacillus ferrivorans SS3 heavy metal translocating P-type ATPase YP_004783336.1 839392 R 743299 CDS YP_004783337.1 344199011 11041989 complement(841428..841808) 1 NC_015942.1 KEGG: afe:Lferr_0187 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; regulatory protein ArsR 841808 11041989 Acife_0826 Acidithiobacillus ferrivorans SS3 regulatory protein ArsR YP_004783337.1 841428 R 743299 CDS YP_004783338.1 344199012 11041991 842807..844486 1 NC_015942.1 KEGG: afe:Lferr_0144 Tn7-like transposition protein C; Tn7-like transposition protein C 844486 11041991 Acife_0828 Acidithiobacillus ferrivorans SS3 Tn7-like transposition protein C YP_004783338.1 842807 D 743299 CDS YP_004783339.1 344199013 11041992 845593..847299 1 NC_015942.1 PFAM: Transposase, IS4-like; KEGG: eba:p2A221 transposase; transposase IS4 family protein 847299 11041992 Acife_0830 Acidithiobacillus ferrivorans SS3 transposase IS4 family protein YP_004783339.1 845593 D 743299 CDS YP_004783340.1 344199014 11041993 848014..849687 1 NC_015942.1 KEGG: afe:Lferr_0142 hypothetical protein; hypothetical protein 849687 11041993 Acife_0831 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783340.1 848014 D 743299 CDS YP_004783341.1 344199015 11041994 complement(850088..851386) 1 NC_015942.1 PFAM: DNA methylase, adenine-specific; KEGG: glo:Glov_3517 N-6 DNA methylase; N-6 DNA methylase 851386 11041994 Acife_0832 Acidithiobacillus ferrivorans SS3 N-6 DNA methylase YP_004783341.1 850088 R 743299 CDS YP_004783342.1 344199016 11041995 complement(851388..852200) 1 NC_015942.1 KEGG: dvl:Dvul_0856 hypothetical protein; hypothetical protein 852200 11041995 Acife_0833 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783342.1 851388 R 743299 CDS YP_004783343.1 344199017 11041996 complement(852197..853927) 1 NC_015942.1 KEGG: dvl:Dvul_0855 SMC domain-containing protein; SMC domain-containing protein 853927 11041996 Acife_0834 Acidithiobacillus ferrivorans SS3 SMC domain-containing protein YP_004783343.1 852197 R 743299 CDS YP_004783344.1 344199018 11041997 complement(853930..855780) 1 NC_015942.1 PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: glo:Glov_3515 restriction modification system DNA specificity domain; restriction modification system DNA specificity domain-containing protein 855780 11041997 Acife_0835 Acidithiobacillus ferrivorans SS3 restriction modification system DNA specificity domain-containing protein YP_004783344.1 853930 R 743299 CDS YP_004783345.1 344199019 11044093 855897..856142 1 NC_015942.1 KEGG: neu:NE1524 hypothetical protein; TIGRFAM: Putative addiction module antidote protein, CC2985; PFAM: Putative addiction module antidote protein, CC2985; addiction module antidote protein 856142 11044093 Acife_0836 Acidithiobacillus ferrivorans SS3 addiction module antidote protein YP_004783345.1 855897 D 743299 CDS YP_004783346.1 344199020 11041998 856135..856425 1 NC_015942.1 PFAM: Plasmid stabilisation system; KEGG: bsb:Bresu_1458 plasmid stabilization system; plasmid stabilization system 856425 11041998 Acife_0837 Acidithiobacillus ferrivorans SS3 plasmid stabilization system YP_004783346.1 856135 D 743299 CDS YP_004783347.1 344199021 11041999 complement(856483..859272) 1 NC_015942.1 KEGG: glo:Glov_3512 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; SMART: DEAD-like helicase, N-terminal; type III restriction protein res subunit 859272 11041999 Acife_0838 Acidithiobacillus ferrivorans SS3 type III restriction protein res subunit YP_004783347.1 856483 R 743299 CDS YP_004783348.1 344199022 11044094 complement(859427..861115) 1 NC_015942.1 PFAM: ATPase associated with various cellular activities, AAA-4; KEGG: aaa:Acav_0838 putative transcriptional regulator; putative transcriptional regulator 861115 11044094 Acife_0839 Acidithiobacillus ferrivorans SS3 putative transcriptional regulator YP_004783348.1 859427 R 743299 CDS YP_004783349.1 344199023 11042000 complement(861087..861284) 1 NC_015942.1 KEGG: bav:BAV0547 hypothetical protein; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Prophage CP4-57 regulatory; excisionase family DNA binding domain-containing protein 861284 11042000 Acife_0840 Acidithiobacillus ferrivorans SS3 excisionase family DNA binding domain-containing protein YP_004783349.1 861087 R 743299 CDS YP_004783350.1 344199024 11042001 complement(861414..862598) 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_0455 hypothetical protein; major facilitator superfamily protein 862598 11042001 Acife_0841 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004783350.1 861414 R 743299 CDS YP_004783351.1 344199025 11042002 complement(862659..863651) 1 NC_015942.1 KEGG: afr:AFE_0457 DNA polymerase III, delta subunit; TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III, delta; DNA polymerase III subunit delta 863651 11042002 Acife_0842 Acidithiobacillus ferrivorans SS3 DNA polymerase III subunit delta YP_004783351.1 862659 R 743299 CDS YP_004783352.1 344199026 11042003 complement(863653..864171) 1 NC_015942.1 KEGG: afr:AFE_0458 rare lipoprotein B, putative; rare lipoprotein B 864171 11042003 Acife_0843 Acidithiobacillus ferrivorans SS3 rare lipoprotein B YP_004783352.1 863653 R 743299 CDS YP_004783353.1 344199027 11042004 complement(864168..866633) 1 NC_015942.1 KEGG: afr:AFE_0459 leucyl-tRNA synthetase; TIGRFAM: Leucyl-tRNA synthetase, class Ia, bacterial/mitochondrial; leucyl-tRNA synthetase 866633 11042004 Acife_0844 Acidithiobacillus ferrivorans SS3 leucyl-tRNA synthetase YP_004783353.1 864168 R 743299 CDS YP_004783354.1 344199028 11042005 complement(866703..866822) 1 NC_015942.1 hypothetical protein 866822 11042005 Acife_0845 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783354.1 866703 R 743299 CDS YP_004783355.1 344199029 11042006 complement(866815..867081) 1 NC_015942.1 KEGG: eba:ebD102 hypothetical protein; TIGRFAM: Addiction module toxin, Txe/YoeB; Addiction module toxin, RelE/StbE; PFAM: Addiction module toxin, Txe/YoeB; Txe/YoeB family addiction module toxin 867081 11042006 Acife_0846 Acidithiobacillus ferrivorans SS3 Txe/YoeB family addiction module toxin YP_004783355.1 866815 R 743299 CDS YP_004783356.1 344199030 11042007 complement(867075..867317) 1 NC_015942.1 TIGRFAM: Prevent-host-death protein; KEGG: eba:ebD103 putative antitoxin of toxin-antitoxin stability system; prevent-host-death family protein 867317 11042007 Acife_0847 Acidithiobacillus ferrivorans SS3 prevent-host-death family protein YP_004783356.1 867075 R 743299 CDS YP_004783357.1 344199031 11044095 complement(867488..867784) 1 NC_015942.1 KEGG: app:CAP2UW1_0321 putative transcriptional regulator; hypothetical protein 867784 11044095 Acife_0848 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783357.1 867488 R 743299 CDS YP_004783358.1 344199032 11042008 complement(867812..868192) 1 NC_015942.1 KEGG: gca:Galf_0854 regulatory protein MarR; regulatory protein MarR 868192 11042008 Acife_0849 Acidithiobacillus ferrivorans SS3 regulatory protein MarR YP_004783358.1 867812 R 743299 CDS YP_004783359.1 344199033 11042009 complement(868189..868602) 1 NC_015942.1 KEGG: mag:amb3185 hypothetical protein; hypothetical protein 868602 11042009 Acife_0850 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783359.1 868189 R 743299 CDS YP_004783360.1 344199034 11044096 868661..869389 1 NC_015942.1 PFAM: Peptidase M15D, vanX D-ala-D-ala dipeptidase; KEGG: afr:AFE_0462 D-alanyl-D-alanine dipeptidase, putative; peptidase M15D vanX D-ala-D-ala dipeptidase 869389 11044096 Acife_0851 Acidithiobacillus ferrivorans SS3 peptidase M15D vanX D-ala-D-ala dipeptidase YP_004783360.1 868661 D 743299 CDS YP_004783361.1 344199035 11042010 complement(869382..870905) 1 NC_015942.1 PFAM: Sulphate transporter; Sulphate transporter/antisigma-factor antagonist STAS; KEGG: gca:Galf_2119 sulphate transporter; sulfate transporter 870905 11042010 Acife_0852 Acidithiobacillus ferrivorans SS3 sulfate transporter YP_004783361.1 869382 R 743299 CDS YP_004783362.1 344199036 11042011 871237..872040 1 NC_015942.1 PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; KEGG: afr:AFE_0463 formamidopyrimidine-DNA glycosylase, putative; DNA-binding DNA glycosylase/AP lyase, H2TH 872040 11042011 Acife_0853 Acidithiobacillus ferrivorans SS3 DNA-binding DNA glycosylase/AP lyase, H2TH YP_004783362.1 871237 D 743299 CDS YP_004783363.1 344199037 11042012 complement(872053..872502) 1 NC_015942.1 SMART: Rhodanese-like; KEGG: afe:Lferr_0624 rhodanese domain-containing protein; rhodanese-like protein 872502 11042012 Acife_0854 Acidithiobacillus ferrivorans SS3 rhodanese-like protein YP_004783363.1 872053 R 743299 CDS YP_004783364.1 344199038 11042013 872783..873946 1 NC_015942.1 KEGG: afr:AFE_0465 cation efflux family protein; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein; cation diffusion facilitator family transporter 873946 11042013 Acife_0855 Acidithiobacillus ferrivorans SS3 cation diffusion facilitator family transporter YP_004783364.1 872783 D 743299 CDS YP_004783365.1 344199039 11042014 874101..875516 1 NC_015942.1 KEGG: afr:AFE_0466 glutamine synthetase, type I; TIGRFAM: Glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp; glutamine synthetase, type I 875516 11042014 Acife_0856 Acidithiobacillus ferrivorans SS3 glutamine synthetase, type I YP_004783365.1 874101 D 743299 CDS YP_004783366.1 344199040 11042015 875664..876227 1 NC_015942.1 KEGG: afe:Lferr_0627 hypothetical protein; hypothetical protein 876227 11042015 Acife_0857 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783366.1 875664 D 743299 CDS YP_004783367.1 344199041 11044097 876897..877184 1 NC_015942.1 PFAM: Transposase IS3/IS911; KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 877184 11044097 Acife_0859 Acidithiobacillus ferrivorans SS3 transposase IS3/IS911 family protein YP_004783367.1 876897 D 743299 CDS YP_004783368.1 344199042 11044098 877181..878065 1 NC_015942.1 KEGG: pna:Pnap_0429 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core; integrase catalytic subunit 878065 11044098 Acife_0860 Acidithiobacillus ferrivorans SS3 integrase catalytic subunit YP_004783368.1 877181 D 743299 CDS YP_004783369.1 344199043 11042016 878395..879096 1 NC_015942.1 KEGG: afr:AFE_0469 protein-L-isoaspartate O-methyltransferase; TIGRFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate O-methyltransferase 879096 11042016 Acife_0861 Acidithiobacillus ferrivorans SS3 protein-L-isoaspartate O-methyltransferase YP_004783369.1 878395 D 743299 CDS YP_004783370.1 344199044 11042017 879093..880034 1 NC_015942.1 KEGG: afr:AFE_0470 RNA polymerase sigma-38 factor; TIGRFAM: RNA polymerase sigma factor RpoS, proteobacteria; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4; RpoD subfamily RNA polymerase sigma-70 subunit 880034 11042017 Acife_0862 Acidithiobacillus ferrivorans SS3 RpoD subfamily RNA polymerase sigma-70 subunit YP_004783370.1 879093 D 743299 CDS YP_004783371.1 344199045 11042018 complement(880062..880436) 1 NC_015942.1 PFAM: Protein of unknown function DUF498; KEGG: afr:AFE_0471 hypothetical protein; hypothetical protein 880436 11042018 Acife_0863 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783371.1 880062 R 743299 CDS YP_004783372.1 344199046 11044099 880531..881712 1 NC_015942.1 PFAM: Aminotransferase, class I/II; KEGG: afr:AFE_0472 aminotransferase, class I/II; class I and II aminotransferase 881712 11044099 Acife_0864 Acidithiobacillus ferrivorans SS3 class I and II aminotransferase YP_004783372.1 880531 D 743299 CDS YP_004783373.1 344199047 11042019 881712..883034 1 NC_015942.1 PFAM: Homoserine dehydrogenase, catalytic; Aspartate/homoserine dehydrogenase, NAD-binding; Amino acid-binding ACT; KEGG: afe:Lferr_0633 homoserine dehydrogenase; homoserine dehydrogenase 883034 11042019 Acife_0865 Acidithiobacillus ferrivorans SS3 homoserine dehydrogenase YP_004783373.1 881712 D 743299 CDS YP_004783374.1 344199048 11042020 883087..884217 1 NC_015942.1 KEGG: afr:AFE_0474 threonine synthase; TIGRFAM: Threonine synthase; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; threonine synthase 884217 11042020 Acife_0866 Acidithiobacillus ferrivorans SS3 threonine synthase YP_004783374.1 883087 D 743299 CDS YP_004783375.1 344199049 11042021 884217..885182 1 NC_015942.1 KEGG: afr:AFE_0475 hypothetical protein; hypothetical protein 885182 11042021 Acife_0867 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783375.1 884217 D 743299 CDS YP_004783376.1 344199050 11042022 885183..885461 1 NC_015942.1 KEGG: afr:AFE_0476 single-stranded-DNA-specific exonuclease RecJ; single-stranded-DNA-specific exonuclease RecJ 885461 11042022 Acife_0868 Acidithiobacillus ferrivorans SS3 single-stranded-DNA-specific exonuclease RecJ YP_004783376.1 885183 D 743299 CDS YP_004783377.1 344199051 11042023 885630..886862 1 NC_015942.1 PFAM: Integrase, catalytic core, phage; KEGG: reh:H16_A0820 site-specific recombinase XerD; integrase family protein 886862 11042023 Acife_0869 Acidithiobacillus ferrivorans SS3 integrase family protein YP_004783377.1 885630 D 743299 CDS YP_004783378.1 344199052 11042024 886867..888852 1 NC_015942.1 KEGG: reh:H16_A0821 hypothetical protein; hypothetical protein 888852 11042024 Acife_0870 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783378.1 886867 D 743299 CDS YP_004783379.1 344199053 11044100 888858..891014 1 NC_015942.1 KEGG: reh:H16_A0822 putative phage integrase; putative phage integrase 891014 11044100 Acife_0871 Acidithiobacillus ferrivorans SS3 putative phage integrase YP_004783379.1 888858 D 743299 CDS YP_004783380.1 344199054 11044101 891001..891474 1 NC_015942.1 KEGG: reh:H16_A0823 hypothetical protein; hypothetical protein 891474 11044101 Acife_0872 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783380.1 891001 D 743299 CDS YP_004783381.1 344199055 11042025 891474..893291 1 NC_015942.1 PFAM: Phosphoesterase, RecJ-like; Phosphoesterase, DHHA1; KEGG: afr:AFE_0476 single-stranded-DNA-specific exonuclease RecJ; phosphoesterase RecJ domain-containing protein 893291 11042025 Acife_0873 Acidithiobacillus ferrivorans SS3 phosphoesterase RecJ domain-containing protein YP_004783381.1 891474 D 743299 CDS YP_004783382.1 344199056 11044102 complement(893646..893780) 1 NC_015942.1 hypothetical protein 893780 11044102 Acife_0874 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783382.1 893646 R 743299 CDS YP_004783383.1 344199057 11042026 894331..899682 1 NC_015942.1 KEGG: noc:Noc_0639 hypothetical protein; hypothetical protein 899682 11042026 Acife_0875 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783383.1 894331 D 743299 CDS YP_004783384.1 344199058 11042027 complement(899843..900439) 1 NC_015942.1 PFAM: Uncharacterised protein family UPF0153; KEGG: xfa:XF2027 hypothetical protein; hypothetical protein 900439 11042027 Acife_0876 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783384.1 899843 R 743299 CDS YP_004783385.1 344199059 11042028 900720..900854 1 NC_015942.1 hypothetical protein 900854 11042028 Acife_0877 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783385.1 900720 D 743299 CDS YP_004783386.1 344199060 11042029 complement(901532..901828) 1 NC_015942.1 PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: afr:AFE_2886 PemI family protein; SpoVT/AbrB domain-containing protein 901828 11042029 Acife_0878 Acidithiobacillus ferrivorans SS3 SpoVT/AbrB domain-containing protein YP_004783386.1 901532 R 743299 CDS YP_004783387.1 344199061 11042031 902161..903024 1 NC_015942.1 KEGG: afr:AFE_3189 hypothetical protein; hypothetical protein 903024 11042031 Acife_0880 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783387.1 902161 D 743299 CDS YP_004783388.1 344199062 11042032 903463..906261 1 NC_015942.1 KEGG: afe:Lferr_1287 putative DNA methylase; putative DNA methylase 906261 11042032 Acife_0881 Acidithiobacillus ferrivorans SS3 putative DNA methylase YP_004783388.1 903463 D 743299 CDS YP_004783389.1 344199063 11042033 906258..907319 1 NC_015942.1 PFAM: Protein of unknown function DUF1016; KEGG: vei:Veis_1750 hypothetical protein; hypothetical protein 907319 11042033 Acife_0882 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783389.1 906258 D 743299 CDS YP_004783390.1 344199064 11044103 907316..909415 1 NC_015942.1 SMART: DEAD-like helicase, N-terminal; KEGG: afe:Lferr_1285 YeeB-like protein; DEAD-like helicase 909415 11044103 Acife_0883 Acidithiobacillus ferrivorans SS3 DEAD-like helicase YP_004783390.1 907316 D 743299 CDS YP_004783391.1 344199065 11044104 909408..910601 1 NC_015942.1 PFAM: Putative helicase A859L; KEGG: afe:Lferr_1284 YeeC-like protein; helicase A859L 910601 11044104 Acife_0884 Acidithiobacillus ferrivorans SS3 helicase A859L YP_004783391.1 909408 D 743299 CDS YP_004783392.1 344199066 11042034 910652..910897 1 NC_015942.1 hypothetical protein 910897 11042034 Acife_0885 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783392.1 910652 D 743299 CDS YP_004783393.1 344199067 11044105 911295..912383 1 NC_015942.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: afe:Lferr_0188 class V aminotransferase; class V aminotransferase 912383 11044105 Acife_0886 Acidithiobacillus ferrivorans SS3 class V aminotransferase YP_004783393.1 911295 D 743299 CDS YP_004783394.1 344199068 11042036 912576..912698 1 NC_015942.1 hypothetical protein 912698 11042036 Acife_0888 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783394.1 912576 D 743299 CDS YP_004783395.1 344199069 11042037 912825..913967 1 NC_015942.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afe:Lferr_0195 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 913967 11042037 Acife_0889 Acidithiobacillus ferrivorans SS3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004783395.1 912825 D 743299 CDS YP_004783396.1 344199070 11042038 complement(914776..916842) 1 NC_015942.1 KEGG: afr:AFE_2439 copper-translocating P-type ATPase; TIGRFAM: ATPase, P type, cation/copper-transporter; ATPase, P-type, heavy metal translocating; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; copper-translocating P-type ATPase 916842 11042038 Acife_0890 Acidithiobacillus ferrivorans SS3 copper-translocating P-type ATPase YP_004783396.1 914776 R 743299 CDS YP_004783397.1 344199071 11042040 917798..918148 1 NC_015942.1 KEGG: afr:AFE_2435 hypothetical protein; hypothetical protein 918148 11042040 Acife_0893 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783397.1 917798 D 743299 CDS YP_004783398.1 344199072 11042041 918242..919558 1 NC_015942.1 PFAM: Outer membrane efflux protein; KEGG: afe:Lferr_0170 outer membrane efflux protein; outer membrane efflux protein 919558 11042041 Acife_0894 Acidithiobacillus ferrivorans SS3 outer membrane efflux protein YP_004783398.1 918242 D 743299 CDS YP_004783399.1 344199073 11042042 919555..920991 1 NC_015942.1 KEGG: afr:AFE_2433 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 920991 11042042 Acife_0895 Acidithiobacillus ferrivorans SS3 RND family efflux transporter MFP subunit YP_004783399.1 919555 D 743299 CDS YP_004783400.1 344199074 11042043 920984..924094 1 NC_015942.1 KEGG: afe:Lferr_0172 CzcA family heavy metal efflux pump; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump 924094 11042043 Acife_0896 Acidithiobacillus ferrivorans SS3 CzcA family heavy metal efflux pump YP_004783400.1 920984 D 743299 CDS YP_004783401.1 344199075 11042044 924120..924866 1 NC_015942.1 KEGG: afe:Lferr_0173 cytochrome b561; cytochrome b561 924866 11042044 Acife_0897 Acidithiobacillus ferrivorans SS3 cytochrome b561 YP_004783401.1 924120 D 743299 CDS YP_004783402.1 344199076 11042045 924994..925356 1 NC_015942.1 KEGG: afe:Lferr_0174 hypothetical protein; hypothetical protein 925356 11042045 Acife_0898 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783402.1 924994 D 743299 CDS YP_004783403.1 344199077 11042046 925474..925782 1 NC_015942.1 KEGG: afe:Lferr_0175 hypothetical protein; hypothetical protein 925782 11042046 Acife_0899 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783403.1 925474 D 743299 CDS YP_004783404.1 344199078 11044107 927619..927834 1 NC_015942.1 KEGG: afe:Lferr_0179 hypothetical protein; hypothetical protein 927834 11044107 Acife_0901 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783404.1 927619 D 743299 CDS YP_004783405.1 344199079 11042048 928231..929520 1 NC_015942.1 KEGG: cph:Cpha266_2208 hypothetical protein; hypothetical protein 929520 11042048 Acife_0902 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783405.1 928231 D 743299 CDS YP_004783406.1 344199080 11042049 929507..930196 1 NC_015942.1 KEGG: cph:Cpha266_2209 hypothetical protein; hypothetical protein 930196 11042049 Acife_0903 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783406.1 929507 D 743299 CDS YP_004783407.1 344199081 11042050 930945..932342 1 NC_015942.1 KEGG: nhl:Nhal_1636 sigma-54 factor interaction domain-containing protein; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; Fis family sigma-54 specific transcriptional regulator 932342 11042050 Acife_0905 Acidithiobacillus ferrivorans SS3 Fis family sigma-54 specific transcriptional regulator YP_004783407.1 930945 D 743299 CDS YP_004783408.1 344199082 11042051 932397..933449 1 NC_015942.1 KEGG: azo:azo3030 hypothetical protein; hypothetical protein 933449 11042051 Acife_0906 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783408.1 932397 D 743299 CDS YP_004783409.1 344199083 11044109 complement(933542..934267) 1 NC_015942.1 manually curated; KEGG: amv:ACMV_06460 hypothetical protein; hypothetical protein 934267 11044109 Acife_0907 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783409.1 933542 R 743299 CDS YP_004783410.1 344199084 11042052 complement(934529..934921) 1 NC_015942.1 KEGG: afr:AFE_1834 hypothetical protein; hypothetical protein 934921 11042052 Acife_0908 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783410.1 934529 R 743299 CDS YP_004783411.1 344199085 11044110 complement(935122..935541) 1 NC_015942.1 hypothetical protein 935541 11044110 Acife_0910 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783411.1 935122 R 743299 CDS YP_004783412.1 344199086 11044111 complement(935568..936116) 1 NC_015942.1 KEGG: azo:azo3029 hypothetical protein; hypothetical protein 936116 11044111 Acife_0911 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783412.1 935568 R 743299 CDS YP_004783413.1 344199087 11042054 complement(936148..936861) 1 NC_015942.1 PFAM: Peptidase C39, bacteriocin processing; KEGG: ppd:Ppro_2175 peptidase C39, bacteriocin processing; peptidase C39 bacteriocin processing 936861 11042054 Acife_0912 Acidithiobacillus ferrivorans SS3 peptidase C39 bacteriocin processing YP_004783413.1 936148 R 743299 CDS YP_004783414.1 344199088 11042055 complement(936874..937233) 1 NC_015942.1 KEGG: rpf:Rpic12D_0335 signal peptide protein; hypothetical protein 937233 11042055 Acife_0913 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783414.1 936874 R 743299 CDS YP_004783415.1 344199089 11044112 complement(937309..938361) 1 NC_015942.1 KEGG: hmg:100209204 similar to predicted protein; hypothetical protein 938361 11044112 Acife_0914 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783415.1 937309 R 743299 CDS YP_004783416.1 344199090 11042056 complement(938778..941993) 1 NC_015942.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: afr:AFE_1707 sensory box-containing diguanylate cyclase, putative; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; GAF sensor-containing diguanylate cyclase/phosphodiesterase 941993 11042056 Acife_0915 Acidithiobacillus ferrivorans SS3 GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_004783416.1 938778 R 743299 CDS YP_004783417.1 344199091 11042057 complement(942063..944222) 1 NC_015942.1 PFAM: Glycosyl transferase, family 2; Type IV pilus assembly PilZ; KEGG: bph:Bphy_2377 cellulose synthase; family 2 glycosyl transferase 944222 11042057 Acife_0916 Acidithiobacillus ferrivorans SS3 family 2 glycosyl transferase YP_004783417.1 942063 R 743299 CDS YP_004783418.1 344199092 11044113 complement(944250..945524) 1 NC_015942.1 KEGG: mpo:Mpop_0886 diguanylate cyclase/phosphodiesterase; PFAM: Diguanylate phosphodiesterase, predicted; SMART: Diguanylate phosphodiesterase, predicted; diguanylate phosphodiesterase 945524 11044113 Acife_0917 Acidithiobacillus ferrivorans SS3 diguanylate phosphodiesterase YP_004783418.1 944250 R 743299 CDS YP_004783419.1 344199093 11042059 complement(946769..947797) 1 NC_015942.1 PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: afr:AFE_3183 ISAfe1, transposase; transposase IS116/IS110/IS902 family protein 947797 11042059 Acife_0919 Acidithiobacillus ferrivorans SS3 transposase IS116/IS110/IS902 family protein YP_004783419.1 946769 R 743299 CDS YP_004783420.1 344199094 11042060 949661..949915 1 NC_015942.1 KEGG: afr:AFE_2495 hypothetical protein; hypothetical protein 949915 11042060 Acife_0921 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783420.1 949661 D 743299 CDS YP_004783421.1 344199095 11042061 949996..950406 1 NC_015942.1 manually curated; KEGG: afr:AFE_2494 hypothetical protein; hypothetical protein 950406 11042061 Acife_0922 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783421.1 949996 D 743299 CDS YP_004783422.1 344199096 11042063 complement(952518..952991) 1 NC_015942.1 PFAM: 4-vinyl reductase, 4VR; KEGG: mfs:MFS40622_1455 4-vinyl reductase 4VR; 4-vinyl reductase 4VR 952991 11042063 Acife_0924 Acidithiobacillus ferrivorans SS3 4-vinyl reductase 4VR YP_004783422.1 952518 R 743299 CDS YP_004783423.1 344199097 11042064 join(953711..953785,953787..954809) 1 NC_015942.1 manually curated; KEGG: ade:Adeh_0244 LigA; peptide chain release factor 2 954809 11042064 Acife_0925 Acidithiobacillus ferrivorans SS3 peptide chain release factor 2 YP_004783423.1 953711 D 743299 CDS YP_004783424.1 344199098 11042065 954846..956336 1 NC_015942.1 TIGRFAM: Lysyl-tRNA synthetase, class II; HAMAP: Lysyl-tRNA synthetase; KEGG: afr:AFE_0480 lysyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (D/K/N); Nucleic acid binding, OB-fold, tRNA/helicase-type; Lysyl-tRNA synthetase 956336 11042065 Acife_0926 Acidithiobacillus ferrivorans SS3 Lysyl-tRNA synthetase YP_004783424.1 954846 D 743299 CDS YP_004783425.1 344199099 11042066 956333..957577 1 NC_015942.1 KEGG: afr:AFE_0481 lipoprotein releasing system transmembrane protein LolC; TIGRFAM: Lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: Protein of unknown function DUF214, permase predicted; lipoprotein releasing system, transmembrane protein, LolC/E family 957577 11042066 Acife_0927 Acidithiobacillus ferrivorans SS3 lipoprotein releasing system, transmembrane protein, LolC/E family YP_004783425.1 956333 D 743299 CDS YP_004783426.1 344199100 11042067 957570..958265 1 NC_015942.1 KEGG: afr:AFE_0483 lipoprotein releasing system, ATP-binding protein LolD; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 958265 11042067 Acife_0928 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004783426.1 957570 D 743299 CDS YP_004783427.1 344199101 11044115 complement(958262..958822) 1 NC_015942.1 PFAM: Protein of unknown function DUF2062; KEGG: afr:AFE_0482 hypothetical protein; hypothetical protein 958822 11044115 Acife_0929 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783427.1 958262 R 743299 CDS YP_004783428.1 344199102 11042068 958903..961017 1 NC_015942.1 KEGG: afr:AFE_0484 DNA internalization-related competence protein ComEC/Rec2; TIGRFAM: ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; ComEC/Rec2-like protein 961017 11042068 Acife_0930 Acidithiobacillus ferrivorans SS3 ComEC/Rec2-like protein YP_004783428.1 958903 D 743299 CDS YP_004783429.1 344199103 11042069 961162..961782 1 NC_015942.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: afr:AFE_0485 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 961782 11042069 Acife_0931 Acidithiobacillus ferrivorans SS3 MotA/TolQ/ExbB proton channel YP_004783429.1 961162 D 743299 CDS YP_004783430.1 344199104 11044116 961779..962183 1 NC_015942.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: afr:AFE_0486 biopolymer transport protein, ExbD/TolR family; biopolymer transport protein ExbD/TolR 962183 11044116 Acife_0932 Acidithiobacillus ferrivorans SS3 biopolymer transport protein ExbD/TolR YP_004783430.1 961779 D 743299 CDS YP_004783431.1 344199105 11042070 962214..962873 1 NC_015942.1 PFAM: Protein of unknown function DUF374; KEGG: afe:Lferr_0647 hypothetical protein; hypothetical protein 962873 11042070 Acife_0933 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783431.1 962214 D 743299 CDS YP_004783432.1 344199106 11042071 962870..964015 1 NC_015942.1 KEGG: afr:AFE_0488 hypothetical protein; hypothetical protein 964015 11042071 Acife_0934 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783432.1 962870 D 743299 CDS YP_004783433.1 344199107 11042072 964012..965010 1 NC_015942.1 TIGRFAM: Tetraacyldisaccharide 4'-kinase; HAMAP: Tetraacyldisaccharide 4'-kinase; KEGG: afr:AFE_0489 tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide 4'-kinase; tetraacyldisaccharide 4'-kinase 965010 11042072 Acife_0935 Acidithiobacillus ferrivorans SS3 tetraacyldisaccharide 4'-kinase YP_004783433.1 964012 D 743299 CDS YP_004783434.1 344199108 11042073 965010..965192 1 NC_015942.1 KEGG: afr:AFE_0490 hypothetical protein; HAMAP: UPF0434 protein ycaR; PFAM: Protein of unknown function DUF343; hypothetical protein 965192 11042073 Acife_0936 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783434.1 965010 D 743299 CDS YP_004783435.1 344199109 11042074 965189..965950 1 NC_015942.1 TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; HAMAP: 3-deoxy-D-manno-octulosonate cytidylyltransferase; KEGG: afr:AFE_0491 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: Acylneuraminate cytidylyltransferase; 3-deoxy-manno-octulosonate cytidylyltransferase 965950 11042074 Acife_0937 Acidithiobacillus ferrivorans SS3 3-deoxy-manno-octulosonate cytidylyltransferase YP_004783435.1 965189 D 743299 CDS YP_004783436.1 344199110 11042075 965972..966493 1 NC_015942.1 KEGG: afr:AFE_0492 inorganic pyrophosphatase; HAMAP: Inorganic pyrophosphatase; PFAM: Inorganic pyrophosphatase; Inorganic pyrophosphatase 966493 11042075 Acife_0938 Acidithiobacillus ferrivorans SS3 Inorganic pyrophosphatase YP_004783436.1 965972 D 743299 CDS YP_004783437.1 344199111 11042076 966558..966938 1 NC_015942.1 KEGG: afr:AFE_0493 hypothetical protein; hypothetical protein 966938 11042076 Acife_0939 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783437.1 966558 D 743299 CDS YP_004783438.1 344199112 11042077 967315..967977 1 NC_015942.1 KEGG: tgr:Tgr7_1787 hypothetical protein; hypothetical protein 967977 11042077 Acife_0941 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783438.1 967315 D 743299 CDS YP_004783439.1 344199113 11042078 968275..969363 1 NC_015942.1 hypothetical protein 969363 11042078 Acife_0942 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783439.1 968275 D 743299 CDS YP_004783440.1 344199114 11042079 969520..969804 1 NC_015942.1 hypothetical protein 969804 11042079 Acife_0943 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783440.1 969520 D 743299 CDS YP_004783441.1 344199115 11044118 970024..970230 1 NC_015942.1 PFAM: Uncharacterised protein family UPF0150; KEGG: app:CAP2UW1_2579 hypothetical protein; hypothetical protein 970230 11044118 Acife_0944 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783441.1 970024 D 743299 CDS YP_004783442.1 344199116 11042080 970223..970438 1 NC_015942.1 PFAM: YcfA-like; KEGG: app:CAP2UW1_2578 YcfA family protein; YcfA family protein 970438 11042080 Acife_0945 Acidithiobacillus ferrivorans SS3 YcfA family protein YP_004783442.1 970223 D 743299 CDS YP_004783443.1 344199117 11042081 970532..971074 1 NC_015942.1 PFAM: DinB; KEGG: pfs:PFLU2952 hypothetical protein; DinB family protein 971074 11042081 Acife_0946 Acidithiobacillus ferrivorans SS3 DinB family protein YP_004783443.1 970532 D 743299 CDS YP_004783444.1 344199118 11042082 971161..971661 1 NC_015942.1 KEGG: afe:Lferr_2023 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 971661 11042082 Acife_0947 Acidithiobacillus ferrivorans SS3 transposase IS3/IS911 family protein YP_004783444.1 971161 D 743299 CDS YP_004783445.1 344199119 11042083 971685..972707 1 NC_015942.1 KEGG: sbl:Sbal_4350 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core; integrase catalytic subunit 972707 11042083 Acife_0948 Acidithiobacillus ferrivorans SS3 integrase catalytic subunit YP_004783445.1 971685 D 743299 CDS YP_004783446.1 344199120 11042084 973206..974546 1 NC_015942.1 PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; KEGG: gpb:HDN1F_31110 RNA-directed DNA polymerase; RNA-directed DNA polymerase 974546 11042084 Acife_0949 Acidithiobacillus ferrivorans SS3 RNA-directed DNA polymerase YP_004783446.1 973206 D 743299 CDS YP_004783447.1 344199121 11042085 974655..975266 1 NC_015942.1 KEGG: ccs:CCNA_01785 hypothetical protein; hypothetical protein 975266 11042085 Acife_0950 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783447.1 974655 D 743299 CDS YP_004783448.1 344199122 11042086 975344..975553 1 NC_015942.1 PFAM: Uncharacterised protein family UPF0150; KEGG: pph:Ppha_1441 protein of unknown function UPF0150; hypothetical protein 975553 11042086 Acife_0951 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783448.1 975344 D 743299 CDS YP_004783449.1 344199123 11044119 975557..975781 1 NC_015942.1 PFAM: YcfA-like; KEGG: cyc:PCC7424_2669 YcfA family protein; YcfA family protein 975781 11044119 Acife_0952 Acidithiobacillus ferrivorans SS3 YcfA family protein YP_004783449.1 975557 D 743299 CDS YP_004783450.1 344199124 11042088 976236..976517 1 NC_015942.1 PFAM: Protein of unknown function DUF1778; KEGG: brh:RBRH_00853 hypothetical protein; hypothetical protein 976517 11042088 Acife_0954 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783450.1 976236 D 743299 CDS YP_004783451.1 344199125 11044120 976514..977044 1 NC_015942.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gpb:HDN1F_37230 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 977044 11044120 Acife_0955 Acidithiobacillus ferrivorans SS3 GCN5-like N-acetyltransferase YP_004783451.1 976514 D 743299 CDS YP_004783452.1 344199126 11042089 977416..978024 1 NC_015942.1 PFAM: Uracil-DNA glycosylase-like; KEGG: afe:Lferr_0676 uracil-DNA glycosylase superfamily; uracil-DNA glycosylase superfamily 978024 11042089 Acife_0956 Acidithiobacillus ferrivorans SS3 uracil-DNA glycosylase superfamily YP_004783452.1 977416 D 743299 CDS YP_004783453.1 344199127 11042090 complement(978093..979568) 1 NC_015942.1 KEGG: afr:AFE_0519 hypothetical protein; HAMAP: UPF0061 protein ydiU; PFAM: Uncharacterised protein family UPF0061; hypothetical protein 979568 11042090 Acife_0957 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783453.1 978093 R 743299 CDS YP_004783454.1 344199128 11044121 complement(979572..981830) 1 NC_015942.1 TIGRFAM: ATP-dependent Clp protease ATP-binding subunit clpA; PFAM: ATPase associated with various cellular activities, AAA-2; ATPase, AAA-type, core; Clp, N-terminal; Clp ATPase, C-terminal; KEGG: afr:AFE_0520 ATP-dependent Clp protease, ATP-binding subunit ClpA; SMART: ATPase, AAA+ type, core; ATP-dependent Clp protease, ATP-binding subunit clpA 981830 11044121 Acife_0958 Acidithiobacillus ferrivorans SS3 ATP-dependent Clp protease, ATP-binding subunit clpA YP_004783454.1 979572 R 743299 CDS YP_004783455.1 344199129 11042091 complement(981834..982142) 1 NC_015942.1 manually curated; HAMAP: ATP-dependent Clp protease adapter protein clpS; KEGG: afr:AFE_0521 ATP-dependent Clp protease adaptor protein ClpS; PFAM: Adaptor protein ClpS, core; ATP-dependent Clp protease adapter protein clpS 982142 11042091 Acife_0959 Acidithiobacillus ferrivorans SS3 ATP-dependent Clp protease adapter protein clpS YP_004783455.1 981834 R 743299 CDS YP_004783456.1 344199130 11042092 complement(982320..983096) 1 NC_015942.1 PFAM: Peptidyl-prolyl cis-trans isomerase, PpiC-type; KEGG: afr:AFE_0522 peptidyl-prolyl cis-trans isomerase, PPIC-type; PpiC-type peptidyl-prolyl cis-trans isomerase 983096 11042092 Acife_0960 Acidithiobacillus ferrivorans SS3 PpiC-type peptidyl-prolyl cis-trans isomerase YP_004783456.1 982320 R 743299 CDS YP_004783457.1 344199131 11044122 complement(983161..983727) 1 NC_015942.1 KEGG: afr:AFE_0523 4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme; TIGRFAM: DJ-1; PFAM: ThiJ/PfpI; DJ-1 family protein 983727 11044122 Acife_0961 Acidithiobacillus ferrivorans SS3 DJ-1 family protein YP_004783457.1 983161 R 743299 CDS YP_004783458.1 344199132 11042093 complement(983866..985302) 1 NC_015942.1 TIGRFAM: Peptidase S41A, C-terminal protease; PFAM: Peptidase S41; PDZ/DHR/GLGF; KEGG: afr:AFE_0524 carboxy-terminal peptidase; SMART: Peptidase S41; PDZ/DHR/GLGF; carboxyl-terminal protease 985302 11042093 Acife_0962 Acidithiobacillus ferrivorans SS3 carboxyl-terminal protease YP_004783458.1 983866 R 743299 CDS YP_004783459.1 344199133 11042094 complement(985402..986817) 1 NC_015942.1 PFAM: Peptidase M23; KEGG: afr:AFE_0525 M23/M37 peptidase domain protein; peptidase M23 986817 11042094 Acife_0963 Acidithiobacillus ferrivorans SS3 peptidase M23 YP_004783459.1 985402 R 743299 CDS YP_004783460.1 344199134 11044123 complement(986821..988350) 1 NC_015942.1 TIGRFAM: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; HAMAP: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: afr:AFE_0526 phosphoglyceromutase; PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 988350 11044123 Acife_0964 Acidithiobacillus ferrivorans SS3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase YP_004783460.1 986821 R 743299 CDS YP_004783461.1 344199135 11042095 complement(988418..990904) 1 NC_015942.1 KEGG: afr:AFE_0527 glycogen/starch/alpha-glucan phosphorylase; TIGRFAM: Glycogen/starch/alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase 990904 11042095 Acife_0965 Acidithiobacillus ferrivorans SS3 glycogen/starch/alpha-glucan phosphorylase YP_004783461.1 988418 R 743299 CDS YP_004783462.1 344199136 11042096 991047..991499 1 NC_015942.1 PFAM: Host attachment protein; KEGG: afr:AFE_0528 hypothetical protein; Host attachment protein 991499 11042096 Acife_0966 Acidithiobacillus ferrivorans SS3 Host attachment protein YP_004783462.1 991047 D 743299 CDS YP_004783463.1 344199137 11044124 991499..991885 1 NC_015942.1 KEGG: afr:AFE_0529 rhodanese-like domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; rhodanese-like protein 991885 11044124 Acife_0967 Acidithiobacillus ferrivorans SS3 rhodanese-like protein YP_004783463.1 991499 D 743299 CDS YP_004783464.1 344199138 11042097 complement(991898..992839) 1 NC_015942.1 PFAM: Carbohydrate/purine kinase; KEGG: afr:AFE_0530 carbohydrate kinase, PfkB family; PfkB domain-containing protein 992839 11042097 Acife_0968 Acidithiobacillus ferrivorans SS3 PfkB domain-containing protein YP_004783464.1 991898 R 743299 CDS YP_004783465.1 344199139 11042098 992962..993567 1 NC_015942.1 KEGG: afr:AFE_0531 hypothetical protein; hypothetical protein 993567 11042098 Acife_0969 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783465.1 992962 D 743299 CDS YP_004783466.1 344199140 11044125 993709..994878 1 NC_015942.1 TIGRFAM: S-adenosylmethionine synthetase; HAMAP: S-adenosylmethionine synthase; KEGG: afr:AFE_0532 S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthase 994878 11044125 Acife_0970 Acidithiobacillus ferrivorans SS3 S-adenosylmethionine synthase YP_004783466.1 993709 D 743299 CDS YP_004783467.1 344199141 11042099 995066..996472 1 NC_015942.1 TIGRFAM: S-adenosyl-L-homocysteine hydrolase; HAMAP: Adenosylhomocysteinase; KEGG: afe:Lferr_0691 S-adenosyl-L-homocysteine hydrolase; PFAM: S-adenosyl-L-homocysteine hydrolase; S-adenosyl-L-homocysteine hydrolase, NAD binding; adenosylhomocysteinase 996472 11042099 Acife_0971 Acidithiobacillus ferrivorans SS3 adenosylhomocysteinase YP_004783467.1 995066 D 743299 CDS YP_004783468.1 344199142 11042100 996472..997290 1 NC_015942.1 KEGG: afr:AFE_0535 5,10-methylenetetrahydrofolate reductase; TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: Methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase 997290 11042100 Acife_0972 Acidithiobacillus ferrivorans SS3 5,10-methylenetetrahydrofolate reductase YP_004783468.1 996472 D 743299 CDS YP_004783469.1 344199143 11044126 997446..998318 1 NC_015942.1 PFAM: Phosphoribulokinase/uridine kinase; KEGG: afr:AFE_0536 phosphoribulokinase; phosphoribulokinase/uridine kinase 998318 11044126 Acife_0973 Acidithiobacillus ferrivorans SS3 phosphoribulokinase/uridine kinase YP_004783469.1 997446 D 743299 CDS YP_004783470.1 344199144 11042102 complement(998527..999534) 1 NC_015942.1 PFAM: Sodium/calcium exchanger membrane region; KEGG: afr:AFE_0587 sodium/calcium exchanger; sodium/calcium exchanger membrane region 999534 11042102 Acife_0974 Acidithiobacillus ferrivorans SS3 sodium/calcium exchanger membrane region YP_004783470.1 998527 R 743299 CDS YP_004783471.1 344199145 11042103 999844..1001682 1 NC_015942.1 KEGG: afr:AFE_0589 ATP-dependent RNA helicase, DEAD/DEAH box family; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; DbpA, RNA-binding; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; DEAD/DEAH box helicase domain-containing protein 1001682 11042103 Acife_0975 Acidithiobacillus ferrivorans SS3 DEAD/DEAH box helicase domain-containing protein YP_004783471.1 999844 D 743299 CDS YP_004783472.1 344199146 11042104 complement(1001777..1001980) 1 NC_015942.1 KEGG: afr:AFE_0590 cold-shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 1001980 11042104 Acife_0976 Acidithiobacillus ferrivorans SS3 cold-shock DNA-binding domain-containing protein YP_004783472.1 1001777 R 743299 CDS YP_004783473.1 344199147 11042105 complement(1002083..1004245) 1 NC_015942.1 TIGRFAM: Primosomal protein n; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; KEGG: afr:AFE_0591 primosomal protein N`; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; primosomal protein N' 1004245 11042105 Acife_0977 Acidithiobacillus ferrivorans SS3 primosomal protein N' YP_004783473.1 1002083 R 743299 CDS YP_004783474.1 344199148 11042106 complement(1004513..1005415) 1 NC_015942.1 TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; HAMAP: 4-hydroxybenzoate octaprenyltransferase; KEGG: afr:AFE_0592 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; 4-hydroxybenzoate octaprenyltransferase 1005415 11042106 Acife_0978 Acidithiobacillus ferrivorans SS3 4-hydroxybenzoate octaprenyltransferase YP_004783474.1 1004513 R 743299 CDS YP_004783475.1 344199149 11044127 complement(1005415..1005993) 1 NC_015942.1 PFAM: Chorismate--pyruvate lyase; KEGG: afe:Lferr_0745 chorismate lyase; chorismate lyase 1005993 11044127 Acife_0979 Acidithiobacillus ferrivorans SS3 chorismate lyase YP_004783475.1 1005415 R 743299 CDS YP_004783476.1 344199150 11042107 complement(1006028..1006612) 1 NC_015942.1 KEGG: afr:AFE_0594 phosphatidylethanolamine N-methyltransferase, putative; phosphatidylethanolamine N-methyltransferase 1006612 11042107 Acife_0980 Acidithiobacillus ferrivorans SS3 phosphatidylethanolamine N-methyltransferase YP_004783476.1 1006028 R 743299 CDS YP_004783477.1 344199151 11044128 1006773..1007153 1 NC_015942.1 KEGG: afr:AFE_0595 lipoprotein, putative; lipoprotein 1007153 11044128 Acife_0981 Acidithiobacillus ferrivorans SS3 lipoprotein YP_004783477.1 1006773 D 743299 CDS YP_004783478.1 344199152 11044129 1007238..1008593 1 NC_015942.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: tRNA-i(6)A37 modification enzyme MiaB; Methylthiotransferase; KEGG: afr:AFE_0596 (dimethylallyl)adenosine tRNA methylthiotransferase; HAMAP: tRNA-i(6)A37 modification enzyme MiaB; PFAM: Methylthiotransferase, N-terminal; Radical SAM; Deoxyribonuclease/rho motif-related TRAM; (dimethylallyl)adenosine tRNA methylthiotransferase MiaB 1008593 11044129 Acife_0982 Acidithiobacillus ferrivorans SS3 (dimethylallyl)adenosine tRNA methylthiotransferase MiaB YP_004783478.1 1007238 D 743299 CDS YP_004783479.1 344199153 11042108 1008598..1009581 1 NC_015942.1 PFAM: PhoH-like protein; KEGG: afr:AFE_0597 PhoH-like protein; PhoH family protein 1009581 11042108 Acife_0983 Acidithiobacillus ferrivorans SS3 PhoH family protein YP_004783479.1 1008598 D 743299 CDS YP_004783480.1 344199154 11044130 1009578..1010075 1 NC_015942.1 TIGRFAM: Uncharacterised protein family UPF0054; HAMAP: Uncharacterised protein family UPF0054; KEGG: afe:Lferr_0750 hypothetical protein; PFAM: Uncharacterised protein family UPF0054; metalloprotease ybeY 1010075 11044130 Acife_0984 Acidithiobacillus ferrivorans SS3 metalloprotease ybeY YP_004783480.1 1009578 D 743299 CDS YP_004783481.1 344199155 11042109 1010068..1010952 1 NC_015942.1 KEGG: afe:Lferr_0751 CBS domain-containing protein; PFAM: Cystathionine beta-synthase, core; Transporter-associated region; SMART: Cystathionine beta-synthase, core; CBS domain-containing protein 1010952 11042109 Acife_0985 Acidithiobacillus ferrivorans SS3 CBS domain-containing protein YP_004783481.1 1010068 D 743299 CDS YP_004783482.1 344199156 11042110 1010949..1012469 1 NC_015942.1 TIGRFAM: Apolipoprotein N-acyltransferase; HAMAP: Apolipoprotein N-acyltransferase; KEGG: afe:Lferr_0752 apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; Apolipoprotein N-acyltransferase 1012469 11042110 Acife_0986 Acidithiobacillus ferrivorans SS3 Apolipoprotein N-acyltransferase YP_004783482.1 1010949 D 743299 CDS YP_004783483.1 344199157 11042111 complement(1012438..1013784) 1 NC_015942.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: afr:AFE_0600 PmbA protein; peptidase U62 modulator of DNA gyrase 1013784 11042111 Acife_0987 Acidithiobacillus ferrivorans SS3 peptidase U62 modulator of DNA gyrase YP_004783483.1 1012438 R 743299 CDS YP_004783484.1 344199158 11042112 1013957..1015006 1 NC_015942.1 PFAM: ABC transporter metal-binding lipoprotein; KEGG: afe:Lferr_0754 periplasmic solute-binding protein; metal ABC transporter substrate-binding protein 1015006 11042112 Acife_0988 Acidithiobacillus ferrivorans SS3 metal ABC transporter substrate-binding protein YP_004783484.1 1013957 D 743299 CDS YP_004783485.1 344199159 11042113 1015020..1015844 1 NC_015942.1 KEGG: afr:AFE_0603 cation ABC transporter, ATP-binding protein, putative; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 1015844 11042113 Acife_0989 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004783485.1 1015020 D 743299 CDS YP_004783486.1 344199160 11042114 1015849..1016754 1 NC_015942.1 PFAM: ABC-3; KEGG: afe:Lferr_0756 ABC-3 protein; ABC transporter permease 1016754 11042114 Acife_0990 Acidithiobacillus ferrivorans SS3 ABC transporter permease YP_004783486.1 1015849 D 743299 CDS YP_004783487.1 344199161 11042115 1016758..1017567 1 NC_015942.1 PFAM: ABC-3; KEGG: afr:AFE_0605 cation ABC transporter, permease protein, putative; ABC transporter permease 1017567 11042115 Acife_0991 Acidithiobacillus ferrivorans SS3 ABC transporter permease YP_004783487.1 1016758 D 743299 CDS YP_004783488.1 344199162 11044131 complement(1017601..1018782) 1 NC_015942.1 KEGG: afr:AFE_0606 hypothetical protein; hypothetical protein 1018782 11044131 Acife_0992 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783488.1 1017601 R 743299 CDS YP_004783489.1 344199163 11042116 complement(1018775..1019629) 1 NC_015942.1 KEGG: afr:AFE_0607 hypothetical protein; hypothetical protein 1019629 11042116 Acife_0993 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783489.1 1018775 R 743299 CDS YP_004783490.1 344199164 11042117 complement(1019849..1020862) 1 NC_015942.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: afr:AFE_0609 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 1020862 11042117 Acife_0994 Acidithiobacillus ferrivorans SS3 NAD-dependent epimerase/dehydratase YP_004783490.1 1019849 R 743299 CDS YP_004783491.1 344199165 11042118 complement(1020859..1021104) 1 NC_015942.1 KEGG: afr:AFE_0610 hypothetical protein; hypothetical protein 1021104 11042118 Acife_0995 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783491.1 1020859 R 743299 CDS YP_004783492.1 344199166 11042119 complement(1021176..1022396) 1 NC_015942.1 KEGG: afr:AFE_0611 hypothetical protein; hypothetical protein 1022396 11042119 Acife_0996 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783492.1 1021176 R 743299 CDS YP_004783493.1 344199167 11042120 complement(1022389..1023243) 1 NC_015942.1 KEGG: afr:AFE_0607 hypothetical protein; hypothetical protein 1023243 11042120 Acife_0997 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783493.1 1022389 R 743299 CDS YP_004783494.1 344199168 11042121 1023550..1023888 1 NC_015942.1 KEGG: afe:Lferr_0764 hypothetical protein; hypothetical protein 1023888 11042121 Acife_0998 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783494.1 1023550 D 743299 CDS YP_004783495.1 344199169 11044132 1023888..1025306 1 NC_015942.1 PFAM: Glycosyl transferase, family 28, C-terminal; KEGG: afe:Lferr_0765 glycosyl transferase-like protein; glycosyl transferase family protein 1025306 11044132 Acife_0999 Acidithiobacillus ferrivorans SS3 glycosyl transferase family protein YP_004783495.1 1023888 D 743299 CDS YP_004783496.1 344199170 11042122 1025303..1026565 1 NC_015942.1 PFAM: Glycosyl transferase, group 1; KEGG: afr:AFE_0615 glycosyl transferase, group 1; group 1 glycosyl transferase 1026565 11042122 Acife_1000 Acidithiobacillus ferrivorans SS3 group 1 glycosyl transferase YP_004783496.1 1025303 D 743299 CDS YP_004783497.1 344199171 11042123 1026562..1027806 1 NC_015942.1 KEGG: afr:AFE_0616 glycosyltransferase, group 1; manually curated; PFAM: Glycosyl transferase, group 1; group 1 glycosyl transferase 1027806 11042123 Acife_1001 Acidithiobacillus ferrivorans SS3 group 1 glycosyl transferase YP_004783497.1 1026562 D 743299 CDS YP_004783498.1 344199172 11042124 1027806..1029635 1 NC_015942.1 KEGG: afr:AFE_0617 ABC transporter, permease/ATP-binding protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region; SMART: ATPase, AAA+ type, core; ABC transporter 1029635 11042124 Acife_1002 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004783498.1 1027806 D 743299 CDS YP_004783499.1 344199173 11042125 1029632..1030936 1 NC_015942.1 KEGG: afr:AFE_0618 UDP-glucose/GDP-mannose dehydrogenase family protein; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; nucleotide sugar dehydrogenase 1030936 11042125 Acife_1003 Acidithiobacillus ferrivorans SS3 nucleotide sugar dehydrogenase YP_004783499.1 1029632 D 743299 CDS YP_004783500.1 344199174 11042126 1030976..1031818 1 NC_015942.1 KEGG: afr:AFE_0619 hypothetical protein; hypothetical protein 1031818 11042126 Acife_1004 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783500.1 1030976 D 743299 CDS YP_004783501.1 344199175 11042127 1031830..1032468 1 NC_015942.1 KEGG: afr:AFE_0621 phosphoglycerate mutase family protein; TIGRFAM: Alpha-ribazole phosphatase, CobC; PFAM: Phosphoglycerate mutase; alpha-ribazole phosphatase 1032468 11042127 Acife_1005 Acidithiobacillus ferrivorans SS3 alpha-ribazole phosphatase YP_004783501.1 1031830 D 743299 CDS YP_004783502.1 344199176 11042128 complement(1032465..1033250) 1 NC_015942.1 KEGG: afr:AFE_0620 hypothetical protein; hypothetical protein 1033250 11042128 Acife_1006 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783502.1 1032465 R 743299 CDS YP_004783503.1 344199177 11044133 complement(1033416..1034201) 1 NC_015942.1 KEGG: afr:AFE_0622 hypothetical protein; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 1034201 11044133 Acife_1007 Acidithiobacillus ferrivorans SS3 helix-turn-helix domain-containing protein YP_004783503.1 1033416 R 743299 CDS YP_004783504.1 344199178 11042129 1034333..1035133 1 NC_015942.1 PFAM: Methyltransferase type 11; KEGG: afr:AFE_0623 methyltransferase, UbiE/COQ5 family; type 11 methyltransferase 1035133 11042129 Acife_1008 Acidithiobacillus ferrivorans SS3 type 11 methyltransferase YP_004783504.1 1034333 D 743299 CDS YP_004783505.1 344199179 11042130 1035145..1036557 1 NC_015942.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit region; HAMAP: 3-isopropylmalate dehydratase, large subunit region; KEGG: afr:AFE_0624 isopropylmalate isomerase large subunit; PFAM: Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha; 3-isopropylmalate dehydratase large subunit 1036557 11042130 Acife_1009 Acidithiobacillus ferrivorans SS3 3-isopropylmalate dehydratase large subunit YP_004783505.1 1035145 D 743299 CDS YP_004783506.1 344199180 11042131 1036705..1037352 1 NC_015942.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit region; HAMAP: 3-isopropylmalate dehydratase, small subunit region; KEGG: afr:AFE_0626 isopropylmalate isomerase small subunit; PFAM: Aconitase A/isopropylmalate dehydratase small subunit, swivel; 3-isopropylmalate dehydratase small subunit 1037352 11042131 Acife_1010 Acidithiobacillus ferrivorans SS3 3-isopropylmalate dehydratase small subunit YP_004783506.1 1036705 D 743299 CDS YP_004783507.1 344199181 11042132 1037349..1037660 1 NC_015942.1 KEGG: afr:AFE_0627 hypothetical protein; hypothetical protein 1037660 11042132 Acife_1011 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783507.1 1037349 D 743299 CDS YP_004783508.1 344199182 11044134 complement(1037670..1038326) 1 NC_015942.1 TIGRFAM: Pyridoxamine 5'-phosphate oxidase; HAMAP: Pyridoxamine 5'-phosphate oxidase; KEGG: afr:AFE_0628 pyridoxamine 5'-phosphate oxidase; PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; Pyridoxine 5'-phosphate oxidase, dimerisation, C-terminal; pyridoxine/pyridoxamine 5'-phosphate oxidase 1038326 11044134 Acife_1012 Acidithiobacillus ferrivorans SS3 pyridoxine/pyridoxamine 5'-phosphate oxidase YP_004783508.1 1037670 R 743299 CDS YP_004783509.1 344199183 11042133 complement(1038354..1039754) 1 NC_015942.1 TIGRFAM: Ribose 5-phosphate isomerase; HAMAP: Ribose-5-phosphate isomerase, subgroup; KEGG: afr:AFE_0629 ribose 5-phosphate isomerase A; PFAM: Ribose 5-phosphate isomerase; ThiJ/PfpI; ribose-5-phosphate isomerase A 1039754 11042133 Acife_1013 Acidithiobacillus ferrivorans SS3 ribose-5-phosphate isomerase A YP_004783509.1 1038354 R 743299 CDS YP_004783510.1 344199184 11042134 1040299..1040622 1 NC_015942.1 hypothetical protein 1040622 11042134 Acife_1014 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783510.1 1040299 D 743299 CDS YP_004783511.1 344199185 11042135 1040623..1041588 1 NC_015942.1 PFAM: Cytochrome c oxidase subunit II C-terminal; KEGG: afr:AFE_0631 cytochrome o ubiquinol oxidase, subunit II; cytochrome c oxidase subunit II 1041588 11042135 Acife_1015 Acidithiobacillus ferrivorans SS3 cytochrome c oxidase subunit II YP_004783511.1 1040623 D 743299 CDS YP_004783512.1 344199186 11042136 1041607..1043640 1 NC_015942.1 PFAM: Cytochrome c oxidase, subunit I; KEGG: afe:Lferr_0782 cytochrome-c oxidase; cytochrome c oxidase subunit I 1043640 11042136 Acife_1016 Acidithiobacillus ferrivorans SS3 cytochrome c oxidase subunit I YP_004783512.1 1041607 D 743299 CDS YP_004783513.1 344199187 11042137 1043825..1044460 1 NC_015942.1 PFAM: Cytochrome c oxidase, subunit III; KEGG: afr:AFE_0633 cytochrome o ubiquinol oxidase, subunit III; cytochrome c oxidase subunit III 1044460 11042137 Acife_1017 Acidithiobacillus ferrivorans SS3 cytochrome c oxidase subunit III YP_004783513.1 1043825 D 743299 CDS YP_004783514.1 344199188 11042138 1044457..1044822 1 NC_015942.1 KEGG: afr:AFE_0634 cytochrome o ubiquinol oxidase, subunit IV; cytochrome o ubiquinol oxidase subunit IV 1044822 11042138 Acife_1018 Acidithiobacillus ferrivorans SS3 cytochrome o ubiquinol oxidase subunit IV YP_004783514.1 1044457 D 743299 CDS YP_004783515.1 344199189 11042139 1045123..1046067 1 NC_015942.1 TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: afr:AFE_3143 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; protoheme IX farnesyltransferase 1046067 11042139 Acife_1020 Acidithiobacillus ferrivorans SS3 protoheme IX farnesyltransferase YP_004783515.1 1045123 D 743299 CDS YP_004783516.1 344199190 11044136 1046108..1046248 1 NC_015942.1 hypothetical protein 1046248 11044136 Acife_1021 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783516.1 1046108 D 743299 CDS YP_004783517.1 344199191 11044137 complement(1046255..1047085) 1 NC_015942.1 KEGG: afr:AFE_0636 undecaprenyl pyrophosphate phosphatase; HAMAP: Undecaprenyl-diphosphatase; PFAM: Bacitracin resistance protein BacA; UDP-diphosphatase 1047085 11044137 Acife_1022 Acidithiobacillus ferrivorans SS3 UDP-diphosphatase YP_004783517.1 1046255 R 743299 CDS YP_004783518.1 344199192 11042140 complement(1047097..1047573) 1 NC_015942.1 TIGRFAM: Prokaryotic transcription elongation factor GreA; HAMAP: Transcription elongation factor greA; KEGG: afr:AFE_0638 transcription elongation factor GreA; PFAM: Transcription elongation factor, GreA/GreB region, prokaryotic; transcription elongation factor GreA 1047573 11042140 Acife_1023 Acidithiobacillus ferrivorans SS3 transcription elongation factor GreA YP_004783518.1 1047097 R 743299 CDS YP_004783519.1 344199193 11042141 complement(1047576..1050809) 1 NC_015942.1 KEGG: afr:AFE_0639 carbamoyl-phosphate synthase, large subunit; TIGRFAM: Carbamoyl phosphate synthase, large subunit, glutamine-dependent; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Carbamoyl phosphate synthetase, large subunit, oligomerisation; MGS-like; carbamoyl-phosphate synthase large subunit 1050809 11042141 Acife_1024 Acidithiobacillus ferrivorans SS3 carbamoyl-phosphate synthase large subunit YP_004783519.1 1047576 R 743299 CDS YP_004783520.1 344199194 11044138 complement(1050802..1051944) 1 NC_015942.1 KEGG: afr:AFE_0640 carbamoyl-phosphate synthase, small subunit; TIGRFAM: Carbamoyl phosphate synthase, small subunit; PFAM: Carbamoyl phosphate synthase, small subunit, N-terminal; Glutamine amidotransferase class-I, C-terminal; carbamoyl-phosphate synthase small subunit 1051944 11044138 Acife_1025 Acidithiobacillus ferrivorans SS3 carbamoyl-phosphate synthase small subunit YP_004783520.1 1050802 R 743299 CDS YP_004783521.1 344199195 11042142 1052181..1052867 1 NC_015942.1 KEGG: afr:AFE_0641 hypothetical protein; hypothetical protein 1052867 11042142 Acife_1026 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783521.1 1052181 D 743299 CDS YP_004783522.1 344199196 11042143 1053145..1053825 1 NC_015942.1 KEGG: afr:AFE_0956 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 1053825 11042143 Acife_1027 Acidithiobacillus ferrivorans SS3 metallo-beta-lactamase family protein YP_004783522.1 1053145 D 743299 CDS YP_004783523.1 344199197 11044139 1053880..1054851 1 NC_015942.1 PFAM: Cytochrome c oxidase subunit II C-terminal; KEGG: afr:AFE_0631 cytochrome o ubiquinol oxidase, subunit II; cytochrome c oxidase subunit II 1054851 11044139 Acife_1028 Acidithiobacillus ferrivorans SS3 cytochrome c oxidase subunit II YP_004783523.1 1053880 D 743299 CDS YP_004783524.1 344199198 11042144 1054853..1057000 1 NC_015942.1 PFAM: Cytochrome c oxidase, subunit I; KEGG: afe:Lferr_0782 cytochrome-c oxidase; cytochrome c oxidase subunit I 1057000 11042144 Acife_1029 Acidithiobacillus ferrivorans SS3 cytochrome c oxidase subunit I YP_004783524.1 1054853 D 743299 CDS YP_004783525.1 344199199 11042145 1057072..1057710 1 NC_015942.1 PFAM: Cytochrome c oxidase, subunit III; KEGG: afr:AFE_0633 cytochrome o ubiquinol oxidase, subunit III; cytochrome c oxidase subunit III 1057710 11042145 Acife_1030 Acidithiobacillus ferrivorans SS3 cytochrome c oxidase subunit III YP_004783525.1 1057072 D 743299 CDS YP_004783526.1 344199200 11042146 1057707..1058093 1 NC_015942.1 KEGG: afr:AFE_0634 cytochrome o ubiquinol oxidase, subunit IV; cytochrome o ubiquinol oxidase subunit IV 1058093 11042146 Acife_1031 Acidithiobacillus ferrivorans SS3 cytochrome o ubiquinol oxidase subunit IV YP_004783526.1 1057707 D 743299 CDS YP_004783527.1 344199201 11042147 1058186..1058443 1 NC_015942.1 hypothetical protein 1058443 11042147 Acife_1032 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783527.1 1058186 D 743299 CDS YP_004783528.1 344199202 11042148 1058758..1059342 1 NC_015942.1 KEGG: afr:AFE_2246 DsbG domain protein; DsbG domain-containing protein 1059342 11042148 Acife_1033 Acidithiobacillus ferrivorans SS3 DsbG domain-containing protein YP_004783528.1 1058758 D 743299 CDS YP_004783529.1 344199203 11042149 complement(1059360..1060367) 1 NC_015942.1 KEGG: hya:HY04AAS1_0222 hypothetical protein; hypothetical protein 1060367 11042149 Acife_1034 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783529.1 1059360 R 743299 CDS YP_004783530.1 344199204 11042150 1061054..1062346 1 NC_015942.1 PFAM: Integrase, catalytic core, phage; KEGG: sli:Slin_1967 integrase family protein; integrase family protein 1062346 11042150 Acife_1036 Acidithiobacillus ferrivorans SS3 integrase family protein YP_004783530.1 1061054 D 743299 CDS YP_004783531.1 344199205 11044141 1062480..1062800 1 NC_015942.1 KEGG: noc:Noc_0284 hypothetical protein; hypothetical protein 1062800 11044141 Acife_1037 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783531.1 1062480 D 743299 CDS YP_004783532.1 344199206 11044142 1062787..1063098 1 NC_015942.1 KEGG: noc:Noc_0283 XRE family transcriptional regulator; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; XRE family transcriptional regulator 1063098 11044142 Acife_1038 Acidithiobacillus ferrivorans SS3 XRE family transcriptional regulator YP_004783532.1 1062787 D 743299 CDS YP_004783533.1 344199207 11042151 1063208..1064074 1 NC_015942.1 hypothetical protein 1064074 11042151 Acife_1039 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783533.1 1063208 D 743299 CDS YP_004783534.1 344199208 11044143 1064238..1064435 1 NC_015942.1 hypothetical protein 1064435 11044143 Acife_1040 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783534.1 1064238 D 743299 CDS YP_004783535.1 344199209 11042152 1064432..1064638 1 NC_015942.1 hypothetical protein 1064638 11042152 Acife_1041 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783535.1 1064432 D 743299 CDS YP_004783536.1 344199210 11042153 1064635..1065573 1 NC_015942.1 KEGG: alv:Alvin_1702 hypothetical protein; hypothetical protein 1065573 11042153 Acife_1042 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783536.1 1064635 D 743299 CDS YP_004783537.1 344199211 11042154 1065573..1066925 1 NC_015942.1 KEGG: nwi:Nwi_1258 hypothetical protein; hypothetical protein 1066925 11042154 Acife_1043 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783537.1 1065573 D 743299 CDS YP_004783538.1 344199212 11042155 complement(1067026..1067997) 1 NC_015942.1 SMART: ATPase, AAA+ type, core; KEGG: psp:PSPPH_B0059 ExeA-like protein; AAA ATPase 1067997 11042155 Acife_1044 Acidithiobacillus ferrivorans SS3 AAA ATPase YP_004783538.1 1067026 R 743299 CDS YP_004783539.1 344199213 11042156 complement(1067987..1069651) 1 NC_015942.1 PFAM: Integrase, catalytic core; KEGG: psp:PSPPH_B0058 phage integrase family site specific recombinase; integrase catalytic subunit 1069651 11042156 Acife_1045 Acidithiobacillus ferrivorans SS3 integrase catalytic subunit YP_004783539.1 1067987 R 743299 CDS YP_004783540.1 344199214 11042157 complement(1069632..1070207) 1 NC_015942.1 PFAM: Resolvase, N-terminal; Resolvase, helix-turn-helix region; KEGG: psp:PSPPH_B0057 resolvase, putative; resolvase domain-containing protein 1070207 11042157 Acife_1046 Acidithiobacillus ferrivorans SS3 resolvase domain-containing protein YP_004783540.1 1069632 R 743299 CDS YP_004783541.1 344199215 11044144 1070480..1071115 1 NC_015942.1 KEGG: cph:Cpha266_2066 hypothetical protein; hypothetical protein 1071115 11044144 Acife_1047 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783541.1 1070480 D 743299 CDS YP_004783542.1 344199216 11042158 1071117..1071551 1 NC_015942.1 hypothetical protein 1071551 11042158 Acife_1048 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783542.1 1071117 D 743299 CDS YP_004783543.1 344199217 11044145 1071544..1071744 1 NC_015942.1 hypothetical protein 1071744 11044145 Acife_1049 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783543.1 1071544 D 743299 CDS YP_004783544.1 344199218 11044146 1071741..1071974 1 NC_015942.1 hypothetical protein 1071974 11044146 Acife_1050 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783544.1 1071741 D 743299 CDS YP_004783545.1 344199219 11042159 1072132..1072782 1 NC_015942.1 KEGG: rso:RSc2475 hypothetical protein; hypothetical protein 1072782 11042159 Acife_1051 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783545.1 1072132 D 743299 CDS YP_004783546.1 344199220 11044147 complement(1073509..1073865) 1 NC_015942.1 KEGG: afr:AFE_2325 hypothetical protein; hypothetical protein 1073865 11044147 Acife_1052 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783546.1 1073509 R 743299 CDS YP_004783547.1 344199221 11042161 complement(1073881..1075512) 1 NC_015942.1 PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; KEGG: afr:AFE_2324 phosphoglucomutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 1075512 11042161 Acife_1053 Acidithiobacillus ferrivorans SS3 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_004783547.1 1073881 R 743299 CDS YP_004783548.1 344199222 11042162 complement(1075521..1075790) 1 NC_015942.1 KEGG: sus:Acid_7627 plasmid related protein; plasmid-like protein 1075790 11042162 Acife_1054 Acidithiobacillus ferrivorans SS3 plasmid-like protein YP_004783548.1 1075521 R 743299 CDS YP_004783549.1 344199223 11042163 complement(1075833..1076723) 1 NC_015942.1 KEGG: afr:AFE_2323 hypothetical protein; hypothetical protein 1076723 11042163 Acife_1055 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783549.1 1075833 R 743299 CDS YP_004783550.1 344199224 11042164 complement(1076745..1077707) 1 NC_015942.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: afe:Lferr_1961 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1077707 11042164 Acife_1056 Acidithiobacillus ferrivorans SS3 NAD-dependent epimerase/dehydratase YP_004783550.1 1076745 R 743299 CDS YP_004783551.1 344199225 11042165 complement(1077707..1078792) 1 NC_015942.1 PFAM: Luciferase-like, subgroup; KEGG: afr:AFE_2321 monooxygenase, luciferase-like protein; Luciferase-like, subgroup 1078792 11042165 Acife_1057 Acidithiobacillus ferrivorans SS3 Luciferase-like, subgroup YP_004783551.1 1077707 R 743299 CDS YP_004783552.1 344199226 11042166 complement(1078950..1079522) 1 NC_015942.1 HAMAP: Oligoribonuclease; PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: afr:AFE_2320 oligoribonuclease Orn; SMART: Exonuclease; oligoribonuclease 1079522 11042166 Acife_1058 Acidithiobacillus ferrivorans SS3 oligoribonuclease YP_004783552.1 1078950 R 743299 CDS YP_004783553.1 344199227 11042167 1079789..1080472 1 NC_015942.1 KEGG: afr:AFE_2319 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; two component winged helix family transcriptional regulator 1080472 11042167 Acife_1059 Acidithiobacillus ferrivorans SS3 two component winged helix family transcriptional regulator YP_004783553.1 1079789 D 743299 CDS YP_004783554.1 344199228 11042168 1080469..1081764 1 NC_015942.1 KEGG: afe:Lferr_1957 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; integral membrane sensor signal transduction histidine kinase 1081764 11042168 Acife_1060 Acidithiobacillus ferrivorans SS3 integral membrane sensor signal transduction histidine kinase YP_004783554.1 1080469 D 743299 CDS YP_004783555.1 344199229 11042169 1081979..1082524 1 NC_015942.1 PFAM: Outer membrane lipoprotein Slp; KEGG: afr:AFE_2316 outer membrane lipoprotein Slp, putative; outer membrane lipoprotein Slp 1082524 11042169 Acife_1061 Acidithiobacillus ferrivorans SS3 outer membrane lipoprotein Slp YP_004783555.1 1081979 D 743299 CDS YP_004783556.1 344199230 11042171 1082755..1083270 1 NC_015942.1 KEGG: afr:AFE_2272 hypothetical protein; hypothetical protein 1083270 11042171 Acife_1062 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783556.1 1082755 D 743299 CDS YP_004783557.1 344199231 11042172 1083450..1084133 1 NC_015942.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: afr:AFE_2270 MotA/TolQ/ExbB proton channel family protein; MotA/TolQ/ExbB proton channel 1084133 11042172 Acife_1063 Acidithiobacillus ferrivorans SS3 MotA/TolQ/ExbB proton channel YP_004783557.1 1083450 D 743299 CDS YP_004783558.1 344199232 11044148 1084133..1084534 1 NC_015942.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: afr:AFE_2269 biopolymer transport protein, ExbD/TolR family; biopolymer transport protein ExbD/TolR 1084534 11044148 Acife_1064 Acidithiobacillus ferrivorans SS3 biopolymer transport protein ExbD/TolR YP_004783558.1 1084133 D 743299 CDS YP_004783559.1 344199233 11042173 1084644..1085375 1 NC_015942.1 KEGG: afr:AFE_2268 TonB family protein; manually curated; TIGRFAM: TonB, C-terminal; TonB family protein 1085375 11042173 Acife_1065 Acidithiobacillus ferrivorans SS3 TonB family protein YP_004783559.1 1084644 D 743299 CDS YP_004783560.1 344199234 11044149 1085421..1086992 1 NC_015942.1 PFAM: Phosphoesterase; KEGG: afr:AFE_2267 phosphoesterase family protein; phosphoesterase 1086992 11044149 Acife_1066 Acidithiobacillus ferrivorans SS3 phosphoesterase YP_004783560.1 1085421 D 743299 CDS YP_004783561.1 344199235 11042175 complement(1087730..1088821) 1 NC_015942.1 TIGRFAM: Dihydroorotate dehydrogenase, class 2; HAMAP: Dihydroorotate dehydrogenase; KEGG: afr:AFE_2264 dihydroorotate dehydrogenase; PFAM: Dihydroorotate dehydrogenase, class 1/ 2; dihydroorotate dehydrogenase 1088821 11042175 Acife_1068 Acidithiobacillus ferrivorans SS3 dihydroorotate dehydrogenase YP_004783561.1 1087730 R 743299 CDS YP_004783562.1 344199236 11044150 complement(1088818..1089708) 1 NC_015942.1 KEGG: afr:AFE_2263 coproporphyrinogen III oxidase; HAMAP: Coproporphyrinogen-III oxidase, aerobic; PFAM: Coproporphyrinogen III oxidase; coproporphyrinogen-III oxidase, aerobic 1089708 11044150 Acife_1069 Acidithiobacillus ferrivorans SS3 coproporphyrinogen-III oxidase, aerobic YP_004783562.1 1088818 R 743299 CDS YP_004783563.1 344199237 11042176 complement(1089713..1090273) 1 NC_015942.1 KEGG: afr:AFE_2262 SUA5/YciO/YrdC family protein; HAMAP: ribosome maturation factor rimN; PFAM: Sua5/YciO/YrdC, N-terminal; ribosome maturation factor rimN 1090273 11042176 Acife_1070 Acidithiobacillus ferrivorans SS3 ribosome maturation factor rimN YP_004783563.1 1089713 R 743299 CDS YP_004783564.1 344199238 11044151 complement(1090289..1091551) 1 NC_015942.1 TIGRFAM: Phosphoribosylglycinamide synthetase; HAMAP: Phosphoribosylglycinamide synthetase; KEGG: afr:AFE_2261 phosphoribosylamine--glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain; Phosphoribosylglycinamide synthetase, N-domain; Phosphoribosylglycinamide synthetase, C-domain; phosphoribosylamine--glycine ligase 1091551 11044151 Acife_1071 Acidithiobacillus ferrivorans SS3 phosphoribosylamine--glycine ligase YP_004783564.1 1090289 R 743299 CDS YP_004783565.1 344199239 11042177 complement(1091565..1093130) 1 NC_015942.1 SMART: AICARFT/IMPCHase bienzyme, formylation region; TIGRFAM: AICARFT/IMPCHase bienzyme; KEGG: afr:AFE_2260 phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; HAMAP: Bifunctional purine biosynthesis protein purH; PFAM: AICARFT/IMPCHase bienzyme, formylation region; MGS-like; bifunctional purine biosynthesis protein purH 1093130 11042177 Acife_1072 Acidithiobacillus ferrivorans SS3 bifunctional purine biosynthesis protein purH YP_004783565.1 1091565 R 743299 CDS YP_004783566.1 344199240 11042178 1093515..1094306 1 NC_015942.1 KEGG: afr:AFE_2256 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 1094306 11042178 Acife_1073 Acidithiobacillus ferrivorans SS3 metallo-beta-lactamase family protein YP_004783566.1 1093515 D 743299 CDS YP_004783567.1 344199241 11042179 1094319..1094687 1 NC_015942.1 KEGG: afe:Lferr_1902 hypothetical protein; hypothetical protein 1094687 11042179 Acife_1074 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783567.1 1094319 D 743299 CDS YP_004783568.1 344199242 11042180 complement(1094714..1095334) 1 NC_015942.1 TIGRFAM: Potassium transporting ATPase, C subunit; HAMAP: Potassium transporting ATPase, C subunit; KEGG: afr:AFE_2473 K+-transporting ATPase, C subunit; PFAM: Potassium transporting ATPase, C subunit; potassium-transporting ATPase subunit C 1095334 11042180 Acife_1075 Acidithiobacillus ferrivorans SS3 potassium-transporting ATPase subunit C YP_004783568.1 1094714 R 743299 CDS YP_004783569.1 344199243 11042181 complement(1095347..1097416) 1 NC_015942.1 TIGRFAM: Potassium-transporting ATPase, B chain; ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; HAMAP: Potassium-transporting ATPase, B chain; KEGG: afr:AFE_2474 K+-transporting ATPase, B subunit; PFAM: ATPase, P-type, ATPase-associated region; Haloacid dehalogenase-like hydrolase; potassium-transporting ATPase subunit B 1097416 11042181 Acife_1076 Acidithiobacillus ferrivorans SS3 potassium-transporting ATPase subunit B YP_004783569.1 1095347 R 743299 CDS YP_004783570.1 344199244 11044152 complement(1097429..1099180) 1 NC_015942.1 TIGRFAM: ATPase, K+ transporting, A subunit; HAMAP: ATPase, K+ transporting, A subunit; KEGG: afr:AFE_2475 K+-transporting ATPase, A subunit; PFAM: ATPase, K+ transporting, A subunit; potassium-transporting ATPase subunit A 1099180 11044152 Acife_1077 Acidithiobacillus ferrivorans SS3 potassium-transporting ATPase subunit A YP_004783570.1 1097429 R 743299 CDS YP_004783571.1 344199245 11042182 complement(1099177..1099269) 1 NC_015942.1 TIGRFAM: ATPase, P-type, K+-transporting, F subunit; KEGG: afr:AFE_2231 K+-transporting ATPase, F subunit; K+-transporting ATPase subunit F 1099269 11042182 Acife_1078 Acidithiobacillus ferrivorans SS3 K+-transporting ATPase subunit F YP_004783571.1 1099177 R 743299 CDS YP_004783572.1 344199246 11042183 complement(1099266..1099358) 1 NC_015942.1 KEGG: afr:AFE_2230 hypothetical protein; hypothetical protein 1099358 11042183 Acife_1079 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783572.1 1099266 R 743299 CDS YP_004783573.1 344199247 11042184 1099630..1102371 1 NC_015942.1 KEGG: afr:AFE_2229 sensor histidine kinase KdpD; PFAM: Signal transduction histidine kinase, osmosensitive K+ channel sensor, N-terminal; UspA; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; ATP-binding region, ATPase-like; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; osmosensitive K+ channel signal transduction histidine kinase 1102371 11042184 Acife_1080 Acidithiobacillus ferrivorans SS3 osmosensitive K+ channel signal transduction histidine kinase YP_004783573.1 1099630 D 743299 CDS YP_004783574.1 344199248 11042185 1102375..1103118 1 NC_015942.1 KEGG: afr:AFE_2228 DNA-binding response regulator KdpE; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; two component winged helix family transcriptional regulator 1103118 11042185 Acife_1081 Acidithiobacillus ferrivorans SS3 two component winged helix family transcriptional regulator YP_004783574.1 1102375 D 743299 CDS YP_004783575.1 344199249 11044153 complement(1103172..1103918) 1 NC_015942.1 PFAM: Haloacid dehalogenase-like hydrolase; KEGG: afe:Lferr_1882 haloacid dehalogenase domain-containing protein hydrolase; haloacid dehalogenase domain-containing protein hydrolase 1103918 11044153 Acife_1082 Acidithiobacillus ferrivorans SS3 haloacid dehalogenase domain-containing protein hydrolase YP_004783575.1 1103172 R 743299 CDS YP_004783576.1 344199250 11042186 complement(1103923..1104921) 1 NC_015942.1 PFAM: Aminoglycoside phosphotransferase; KEGG: afr:AFE_2226 hypothetical protein; aminoglycoside phosphotransferase 1104921 11042186 Acife_1083 Acidithiobacillus ferrivorans SS3 aminoglycoside phosphotransferase YP_004783576.1 1103923 R 743299 CDS YP_004783577.1 344199251 11042187 complement(1104940..1105572) 1 NC_015942.1 KEGG: afe:Lferr_1880 hypothetical protein; hypothetical protein 1105572 11042187 Acife_1084 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783577.1 1104940 R 743299 CDS YP_004783578.1 344199252 11044154 1105628..1107226 1 NC_015942.1 PFAM: Amino acid permease-associated region; KEGG: afr:AFE_2457 amino acid permease family protein; amino acid permease-associated protein 1107226 11044154 Acife_1085 Acidithiobacillus ferrivorans SS3 amino acid permease-associated protein YP_004783578.1 1105628 D 743299 CDS YP_004783579.1 344199253 11044155 complement(1107403..1107501) 1 NC_015942.1 hypothetical protein 1107501 11044155 Acife_1087 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783579.1 1107403 R 743299 CDS YP_004783580.1 344199254 11042189 complement(1107625..1110339) 1 NC_015942.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: tin:Tint_2563 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase 1110339 11042189 Acife_1088 Acidithiobacillus ferrivorans SS3 diguanylate cyclase/phosphodiesterase YP_004783580.1 1107625 R 743299 CDS YP_004783581.1 344199255 11042190 complement(1110601..1113090) 1 NC_015942.1 PFAM: Glycosyl transferase, family 51; Penicillin-binding protein, transpeptidase; KEGG: afr:AFE_2223 penicillin-binding protein 1A, putative; glycosyl transferase family protein 1113090 11042190 Acife_1089 Acidithiobacillus ferrivorans SS3 glycosyl transferase family protein YP_004783581.1 1110601 R 743299 CDS YP_004783582.1 344199256 11042191 1113191..1114615 1 NC_015942.1 KEGG: afr:AFE_2222 glutamyl-tRNA synthetase; TIGRFAM: Glutamyl-tRNA synthetase, class Ic, bacterial/mitochondrial; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-tRNA synthetase 1114615 11042191 Acife_1090 Acidithiobacillus ferrivorans SS3 glutamyl-tRNA synthetase YP_004783582.1 1113191 D 743299 CDS YP_004783583.1 344199257 11042192 1114636..1116024 1 NC_015942.1 KEGG: afr:AFE_2221 cysteinyl-tRNA synthetase; TIGRFAM: Cysteinyl-tRNA synthetase, class Ia; PFAM: Cysteinyl-tRNA synthetase, class Ia, N-terminal; Cysteinyl-tRNA synthetase, class Ia, DALR; cysteinyl-tRNA synthetase 1116024 11042192 Acife_1091 Acidithiobacillus ferrivorans SS3 cysteinyl-tRNA synthetase YP_004783583.1 1114636 D 743299 CDS YP_004783584.1 344199258 11044156 complement(1116067..1118376) 1 NC_015942.1 KEGG: afr:AFE_2220 ribonuclease, Rne/Rng family; TIGRFAM: Ribonuclease E/G; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; Ribosomal protein S1, RNA binding domain; Rne/Rng family ribonuclease 1118376 11044156 Acife_1092 Acidithiobacillus ferrivorans SS3 Rne/Rng family ribonuclease YP_004783584.1 1116067 R 743299 CDS YP_004783585.1 344199259 11042193 1118577..1119530 1 NC_015942.1 TIGRFAM: Pseudouridine synthase, RluC/RluD; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; KEGG: afr:AFE_2219 ribosomal large subunit pseudouridine synthase C; SMART: RNA-binding S4; RluA family pseudouridine synthase 1119530 11042193 Acife_1093 Acidithiobacillus ferrivorans SS3 RluA family pseudouridine synthase YP_004783585.1 1118577 D 743299 CDS YP_004783586.1 344199260 11042195 complement(1120632..1121429) 1 NC_015942.1 PFAM: Inositol monophosphatase; KEGG: afr:AFE_0669 inositol monophosphate family protein; inositol monophosphatase 1121429 11042195 Acife_1095 Acidithiobacillus ferrivorans SS3 inositol monophosphatase YP_004783586.1 1120632 R 743299 CDS YP_004783587.1 344199261 11042196 1121484..1122272 1 NC_015942.1 KEGG: afr:AFE_0670 RNA methyltransferase, TrmH family, group 1; TIGRFAM: RNA methyltransferase TrmH, group 1; PFAM: tRNA/rRNA methyltransferase, SpoU; TrmH family RNA methyltransferase 1122272 11042196 Acife_1096 Acidithiobacillus ferrivorans SS3 TrmH family RNA methyltransferase YP_004783587.1 1121484 D 743299 CDS YP_004783588.1 344199262 11044157 1122272..1123066 1 NC_015942.1 TIGRFAM: Serine O-acetyltransferase; KEGG: afe:Lferr_0820 serine O-acetyltransferase; serine O-acetyltransferase 1123066 11044157 Acife_1097 Acidithiobacillus ferrivorans SS3 serine O-acetyltransferase YP_004783588.1 1122272 D 743299 CDS YP_004783589.1 344199263 11042197 1123113..1123601 1 NC_015942.1 KEGG: afr:AFE_0672 iron-sulfur cluster assembly transcription factor IscR; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2; BadM/Rrf2 family transcriptional regulator 1123601 11042197 Acife_1098 Acidithiobacillus ferrivorans SS3 BadM/Rrf2 family transcriptional regulator YP_004783589.1 1123113 D 743299 CDS YP_004783590.1 344199264 11042198 1123620..1124885 1 NC_015942.1 TIGRFAM: Cysteine desulfurase; HAMAP: Cysteine desulfurase; KEGG: afe:Lferr_0822 cysteine desulfurase IscS; PFAM: Aminotransferase, class V/Cysteine desulfurase; cysteine desulfurase 1124885 11042198 Acife_1099 Acidithiobacillus ferrivorans SS3 cysteine desulfurase YP_004783590.1 1123620 D 743299 CDS YP_004783591.1 344199265 11042199 1124910..1125341 1 NC_015942.1 KEGG: afr:AFE_0674 FeS cluster assembly scaffold protein IscU; TIGRFAM: ISC system FeS cluster assembly, IscU scaffold; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; FeS cluster assembly scaffold IscU 1125341 11042199 Acife_1100 Acidithiobacillus ferrivorans SS3 FeS cluster assembly scaffold IscU YP_004783591.1 1124910 D 743299 CDS YP_004783592.1 344199266 11042200 1125351..1125674 1 NC_015942.1 KEGG: afr:AFE_0675 iron-sulfur cluster assembly protein IscA; TIGRFAM: ISC system FeS cluster assembly, IscA scaffold; FeS cluster insertion; PFAM: FeS cluster biogenesis; iron-sulfur cluster assembly protein IscA 1125674 11042200 Acife_1101 Acidithiobacillus ferrivorans SS3 iron-sulfur cluster assembly protein IscA YP_004783592.1 1125351 D 743299 CDS YP_004783593.1 344199267 11044158 1125674..1126291 1 NC_015942.1 TIGRFAM: Co-chaperone Hsc20; HAMAP: Co-chaperone protein hscB; KEGG: afe:Lferr_0825 co-chaperone Hsc20; PFAM: Heat shock cognate protein B, C-terminal oligomerisation; Heat shock protein DnaJ, N-terminal; Co-chaperone protein hscB 1126291 11044158 Acife_1102 Acidithiobacillus ferrivorans SS3 Co-chaperone protein hscB YP_004783593.1 1125674 D 743299 CDS YP_004783594.1 344199268 11042201 1126372..1128237 1 NC_015942.1 TIGRFAM: ISC system FeS cluster assembly, HscA chaperone; HAMAP: ISC system FeS cluster assembly, HscA chaperone; KEGG: afr:AFE_0677 chaperone protein HscA; PFAM: Heat shock protein 70; chaperone protein hscA 1128237 11042201 Acife_1103 Acidithiobacillus ferrivorans SS3 chaperone protein hscA YP_004783594.1 1126372 D 743299 CDS YP_004783595.1 344199269 11042202 1128238..1128576 1 NC_015942.1 KEGG: afr:AFE_0678 ferredoxin, 2Fe-2S; TIGRFAM: Ferredoxin, 2Fe-2S type; PFAM: Ferredoxin; ferredoxin, 2Fe-2S type, ISC system 1128576 11042202 Acife_1104 Acidithiobacillus ferrivorans SS3 ferredoxin, 2Fe-2S type, ISC system YP_004783595.1 1128238 D 743299 CDS YP_004783596.1 344199270 11044159 1128576..1128770 1 NC_015942.1 KEGG: afr:AFE_0679 hypothetical protein; TIGRFAM: ISC system FeS cluster assembly, IscX; PFAM: ISC system FeS cluster assembly, IscX; FeS assembly protein IscX 1128770 11044159 Acife_1105 Acidithiobacillus ferrivorans SS3 FeS assembly protein IscX YP_004783596.1 1128576 D 743299 CDS YP_004783597.1 344199271 11044160 1128784..1129842 1 NC_015942.1 TIGRFAM: tRNA-specific 2-thiouridylase; HAMAP: tRNA-specific 2-thiouridylase; KEGG: afr:AFE_0680 tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; PFAM: tRNA methyl transferase-like; tRNA-specific 2-thiouridylase mnmA 1129842 11044160 Acife_1106 Acidithiobacillus ferrivorans SS3 tRNA-specific 2-thiouridylase mnmA YP_004783597.1 1128784 D 743299 CDS YP_004783598.1 344199272 11042203 complement(1129861..1130760) 1 NC_015942.1 PFAM: Patatin; KEGG: afr:AFE_0681 patatin-like phospholipase family protein; patatin 1130760 11042203 Acife_1107 Acidithiobacillus ferrivorans SS3 patatin YP_004783598.1 1129861 R 743299 CDS YP_004783599.1 344199273 11042204 1131016..1131258 1 NC_015942.1 TIGRFAM: Prevent-host-death protein; KEGG: sfu:Sfum_1406 prevent-host-death family protein; prevent-host-death family protein 1131258 11042204 Acife_1108 Acidithiobacillus ferrivorans SS3 prevent-host-death family protein YP_004783599.1 1131016 D 743299 CDS YP_004783600.1 344199274 11044161 1131258..1131680 1 NC_015942.1 KEGG: amv:ACMV_26750 hypothetical protein; hypothetical protein 1131680 11044161 Acife_1109 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783600.1 1131258 D 743299 CDS YP_004783601.1 344199275 11042205 1131703..1131831 1 NC_015942.1 KEGG: tye:THEYE_A1689 type I restriction enzyme EcoKI M protein; hypothetical protein 1131831 11042205 Acife_1110 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783601.1 1131703 D 743299 CDS YP_004783602.1 344199276 11044162 1131831..1132685 1 NC_015942.1 KEGG: afr:AFE_0698 S-formylglutathione hydrolase; TIGRFAM: S-formylglutathione hydrolase; PFAM: Putative esterase; S-formylglutathione hydrolase 1132685 11044162 Acife_1111 Acidithiobacillus ferrivorans SS3 S-formylglutathione hydrolase YP_004783602.1 1131831 D 743299 CDS YP_004783603.1 344199277 11042206 1132783..1132983 1 NC_015942.1 KEGG: afr:AFE_0642 thiamine biosynthesis protein ThiS; TIGRFAM: ThiS, thiamine-biosynthesis; PFAM: ThiamineS; thiamine biosynthesis protein ThiS 1132983 11042206 Acife_1112 Acidithiobacillus ferrivorans SS3 thiamine biosynthesis protein ThiS YP_004783603.1 1132783 D 743299 CDS YP_004783604.1 344199278 11042207 1133028..1133810 1 NC_015942.1 KEGG: afr:AFE_0643 thiamin biosynthesis protein ThiG; HAMAP: Thiazole biosynthesis; PFAM: Thiazole biosynthesis; thiazole synthase 1133810 11042207 Acife_1113 Acidithiobacillus ferrivorans SS3 thiazole synthase YP_004783604.1 1133028 D 743299 CDS YP_004783605.1 344199279 11042208 1133791..1134381 1 NC_015942.1 KEGG: afr:AFE_0644 hypothetical protein; hypothetical protein 1134381 11042208 Acife_1114 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783605.1 1133791 D 743299 CDS YP_004783606.1 344199280 11042209 1134395..1135762 1 NC_015942.1 manually curated; TIGRFAM: UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; KEGG: afr:AFE_0645 UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso- diaminopimelate ligase; PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal; UDP-N-acetylmuramate--L-alanine ligase 1135762 11042209 Acife_1115 Acidithiobacillus ferrivorans SS3 UDP-N-acetylmuramate--L-alanine ligase YP_004783606.1 1134395 D 743299 CDS YP_004783607.1 344199281 11044163 1135793..1136434 1 NC_015942.1 KEGG: afr:AFE_0647 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative; TIGRFAM: Phenylacrylic acid decarboxylase; PFAM: Flavoprotein; 3-octaprenyl-4-hydroxybenzoate carboxy-lyase 1136434 11044163 Acife_1116 Acidithiobacillus ferrivorans SS3 3-octaprenyl-4-hydroxybenzoate carboxy-lyase YP_004783607.1 1135793 D 743299 CDS YP_004783608.1 344199282 11042210 complement(1136451..1137236) 1 NC_015942.1 KEGG: afr:AFE_0646 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 1137236 11042210 Acife_1117 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004783608.1 1136451 R 743299 CDS YP_004783609.1 344199283 11042211 complement(1137236..1138345) 1 NC_015942.1 KEGG: afr:AFE_0648 ABC transporter, permease protein, putative; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140; hypothetical protein 1138345 11042211 Acife_1118 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783609.1 1137236 R 743299 CDS YP_004783610.1 344199284 11042212 1138417..1138923 1 NC_015942.1 SMART: Water Stress/Hypersensitive response domain; KEGG: afr:AFE_0650 hypothetical protein; Water stress and Hypersensitive response domain-containing protein 1138923 11042212 Acife_1119 Acidithiobacillus ferrivorans SS3 Water stress and Hypersensitive response domain-containing protein YP_004783610.1 1138417 D 743299 CDS YP_004783611.1 344199285 11042213 complement(1138868..1139659) 1 NC_015942.1 PFAM: Endonuclease/exonuclease/phosphatase; KEGG: afe:Lferr_0800 endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase 1139659 11042213 Acife_1120 Acidithiobacillus ferrivorans SS3 endonuclease/exonuclease/phosphatase YP_004783611.1 1138868 R 743299 CDS YP_004783612.1 344199286 11042214 complement(1139637..1139987) 1 NC_015942.1 KEGG: afr:AFE_0651 hypothetical protein; hypothetical protein 1139987 11042214 Acife_1121 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783612.1 1139637 R 743299 CDS YP_004783613.1 344199287 11042215 complement(1139984..1140739) 1 NC_015942.1 PFAM: UBA/THIF-type NAD/FAD binding fold; MoeZ/MoeB; KEGG: afr:AFE_0652 molybdopterin biosynthesis MoeB protein; UBA/THIF-type NAD/FAD binding protein 1140739 11042215 Acife_1122 Acidithiobacillus ferrivorans SS3 UBA/THIF-type NAD/FAD binding protein YP_004783613.1 1139984 R 743299 CDS YP_004783614.1 344199288 11042216 complement(1140732..1141175) 1 NC_015942.1 KEGG: tgr:Tgr7_3241 hypothetical protein; hypothetical protein 1141175 11042216 Acife_1123 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783614.1 1140732 R 743299 CDS YP_004783615.1 344199289 11044164 complement(1141235..1142377) 1 NC_015942.1 KEGG: afr:AFE_0653 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF2006; hypothetical protein 1142377 11044164 Acife_1124 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783615.1 1141235 R 743299 CDS YP_004783616.1 344199290 11042217 complement(1142370..1144877) 1 NC_015942.1 PFAM: Protein of unknown function DUF214, permase predicted; KEGG: afr:AFE_0654 ABC transporter, permease protein; hypothetical protein 1144877 11042217 Acife_1125 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783616.1 1142370 R 743299 CDS YP_004783617.1 344199291 11044165 complement(1144874..1145590) 1 NC_015942.1 KEGG: afe:Lferr_0805 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 1145590 11044165 Acife_1126 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004783617.1 1144874 R 743299 CDS YP_004783618.1 344199292 11042219 1145998..1146324 1 NC_015942.1 KEGG: afr:AFE_0657 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; thioredoxin 1146324 11042219 Acife_1127 Acidithiobacillus ferrivorans SS3 thioredoxin YP_004783618.1 1145998 D 743299 CDS YP_004783619.1 344199293 11044166 1146321..1147697 1 NC_015942.1 TIGRFAM: Transcription termination factor Rho; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; Rho termination factor, RNA-binding; Rho termination factor, N-terminal; KEGG: afr:AFE_0658 transcription termination factor Rho; SMART: Cold shock protein; ATPase, AAA+ type, core; transcription termination factor Rho 1147697 11044166 Acife_1128 Acidithiobacillus ferrivorans SS3 transcription termination factor Rho YP_004783619.1 1146321 D 743299 CDS YP_004783620.1 344199294 11042220 1147773..1147976 1 NC_015942.1 TIGRFAM: Ribosomal protein L31; HAMAP: 50S ribosomal protein L31; KEGG: afr:AFE_0659 ribosomal protein L31; PFAM: Ribosomal protein L31; 50S ribosomal protein L31 1147976 11042220 Acife_1129 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L31 YP_004783620.1 1147773 D 743299 CDS YP_004783621.1 344199295 11042221 1147983..1149221 1 NC_015942.1 PFAM: Malic enzyme, NAD-binding; Malic enzyme, N-terminal; KEGG: afr:AFE_0660 malic enzyme family protein; NAD-binding malic protein 1149221 11042221 Acife_1130 Acidithiobacillus ferrivorans SS3 NAD-binding malic protein YP_004783621.1 1147983 D 743299 CDS YP_004783622.1 344199296 11042222 1149228..1150283 1 NC_015942.1 PFAM: Uncharacterised protein family UPF0118; KEGG: afr:AFE_0661 hypothetical protein; hypothetical protein 1150283 11042222 Acife_1131 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783622.1 1149228 D 743299 CDS YP_004783623.1 344199297 11044167 1150433..1152109 1 NC_015942.1 TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: afr:AFE_0662 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 1152109 11044167 Acife_1132 Acidithiobacillus ferrivorans SS3 dihydroxy-acid dehydratase YP_004783623.1 1150433 D 743299 CDS YP_004783624.1 344199298 11042223 1152116..1153075 1 NC_015942.1 PFAM: Protein of unknown function DUF88; KEGG: afr:AFE_0663 hypothetical protein; hypothetical protein 1153075 11042223 Acife_1133 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783624.1 1152116 D 743299 CDS YP_004783625.1 344199299 11042224 complement(1153083..1154396) 1 NC_015942.1 KEGG: afr:AFE_0664 N-acetylglutamate synthase; TIGRFAM: Amino-acid N-acetyltransferase (ArgA); PFAM: Aspartate/glutamate/uridylate kinase; GCN5-related N-acetyltransferase; amino-acid N-acetyltransferase 1154396 11042224 Acife_1134 Acidithiobacillus ferrivorans SS3 amino-acid N-acetyltransferase YP_004783625.1 1153083 R 743299 CDS YP_004783626.1 344199300 11042225 complement(1154407..1154718) 1 NC_015942.1 PFAM: BolA-like protein; KEGG: afr:AFE_0665 BolA family protein; BolA family protein 1154718 11042225 Acife_1135 Acidithiobacillus ferrivorans SS3 BolA family protein YP_004783626.1 1154407 R 743299 CDS YP_004783627.1 344199301 11042226 complement(1154715..1155017) 1 NC_015942.1 PFAM: YCII-related; KEGG: afr:AFE_0666 YCII-related domain protein; YCII-like protein 1155017 11042226 Acife_1136 Acidithiobacillus ferrivorans SS3 YCII-like protein YP_004783627.1 1154715 R 743299 CDS YP_004783628.1 344199302 11042227 complement(1155105..1155662) 1 NC_015942.1 TIGRFAM: Intracellular septation protein A; HAMAP: Intracellular septation protein A; KEGG: afr:AFE_0667 intracellular septation protein A; PFAM: Intracellular septation protein A; intracellular septation protein 1155662 11042227 Acife_1137 Acidithiobacillus ferrivorans SS3 intracellular septation protein YP_004783628.1 1155105 R 743299 CDS YP_004783629.1 344199303 11042228 1155726..1156598 1 NC_015942.1 KEGG: afr:AFE_0668 hypothetical protein; PFAM: Protein of unknown function DUF815; SMART: ATPase, AAA+ type, core; hypothetical protein 1156598 11042228 Acife_1138 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783629.1 1155726 D 743299 CDS YP_004783630.1 344199304 11042229 1156834..1157100 1 NC_015942.1 KEGG: tsc:TSC_c24400 AbrB family transcriptional regulator; AbrB family transcriptional regulator 1157100 11042229 Acife_1139 Acidithiobacillus ferrivorans SS3 AbrB family transcriptional regulator YP_004783630.1 1156834 D 743299 CDS YP_004783631.1 344199305 11044168 complement(1157164..1157457) 1 NC_015942.1 TIGRFAM: Addiction module antidote protein, HI1420; KEGG: afe:Lferr_0282 putative transcriptional regulator; addiction module antidote protein 1157457 11044168 Acife_1140 Acidithiobacillus ferrivorans SS3 addiction module antidote protein YP_004783631.1 1157164 R 743299 CDS YP_004783632.1 344199306 11042230 complement(1157459..1157623) 1 NC_015942.1 hypothetical protein 1157623 11042230 Acife_1141 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783632.1 1157459 R 743299 CDS YP_004783633.1 344199307 11044169 complement(1157780..1158094) 1 NC_015942.1 PFAM: Nucleotidyltransferase; KEGG: glo:Glov_3592 DNA polymerase beta domain protein region; DNA polymerase beta domain-containing protein 1158094 11044169 Acife_1142 Acidithiobacillus ferrivorans SS3 DNA polymerase beta domain-containing protein YP_004783633.1 1157780 R 743299 CDS YP_004783634.1 344199308 11042231 complement(1158087..1158479) 1 NC_015942.1 KEGG: glo:Glov_3593 nucleotidyltransferase substrate binding protein, HI0074 family; TIGRFAM: Nucleotidyltransferase substrate binding protein, HI0074; PFAM: Nucleotidyltransferase substrate binding protein, HI0074; nucleotidyltransferase substrate binding protein 1158479 11042231 Acife_1143 Acidithiobacillus ferrivorans SS3 nucleotidyltransferase substrate binding protein YP_004783634.1 1158087 R 743299 CDS YP_004783635.1 344199309 11042232 complement(1158645..1158977) 1 NC_015942.1 KEGG: syp:SYNPCC7002_A1564 HicB-related protein; HicB-like protein 1158977 11042232 Acife_1144 Acidithiobacillus ferrivorans SS3 HicB-like protein YP_004783635.1 1158645 R 743299 CDS YP_004783636.1 344199310 11044171 1159211..1159468 1 NC_015942.1 KEGG: lbf:LBF_1159 hypothetical protein; hypothetical protein 1159468 11044171 Acife_1147 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783636.1 1159211 D 743299 CDS YP_004783637.1 344199311 11042234 1159562..1160899 1 NC_015942.1 PFAM: Transposase, IS4-like; KEGG: npu:Npun_BR216 hypothetical protein; transposase IS4 family protein 1160899 11042234 Acife_1148 Acidithiobacillus ferrivorans SS3 transposase IS4 family protein YP_004783637.1 1159562 D 743299 CDS YP_004783638.1 344199312 11042235 1160903..1161811 1 NC_015942.1 KEGG: dat:HRM2_05840 hypothetical protein; hypothetical protein 1161811 11042235 Acife_1149 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783638.1 1160903 D 743299 CDS YP_004783639.1 344199313 11044172 complement(1162285..1162692) 1 NC_015942.1 PFAM: PilT protein, N-terminal; KEGG: eba:ebD130 virulence associated protein VapC; PilT protein domain-containing protein 1162692 11044172 Acife_1152 Acidithiobacillus ferrivorans SS3 PilT protein domain-containing protein YP_004783639.1 1162285 R 743299 CDS YP_004783640.1 344199314 11042238 complement(1162692..1162922) 1 NC_015942.1 PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: eba:ebA7217 related to putative virulence-associated proteins and nitrogen regulatory protein NtrP; SpoVT/AbrB domain-containing protein 1162922 11042238 Acife_1153 Acidithiobacillus ferrivorans SS3 SpoVT/AbrB domain-containing protein YP_004783640.1 1162692 R 743299 CDS YP_004783641.1 344199315 11042239 1163409..1164650 1 NC_015942.1 KEGG: dba:Dbac_2317 AAA family ATPase; AAA family ATPase 1164650 11042239 Acife_1154 Acidithiobacillus ferrivorans SS3 AAA family ATPase YP_004783641.1 1163409 D 743299 CDS YP_004783642.1 344199316 11042240 complement(1164672..1166114) 1 NC_015942.1 KEGG: afr:AFE_1366 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; TIGRFAM: Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: Mannose-6-phosphate isomerase, type II, C-terminal; Nucleotidyl transferase; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase 1166114 11042240 Acife_1155 Acidithiobacillus ferrivorans SS3 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase YP_004783642.1 1164672 R 743299 CDS YP_004783643.1 344199317 11042241 complement(1166134..1166466) 1 NC_015942.1 KEGG: slt:Slit_2475 hypothetical protein; hypothetical protein 1166466 11042241 Acife_1156 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783643.1 1166134 R 743299 CDS YP_004783644.1 344199318 11042242 complement(1166463..1166687) 1 NC_015942.1 PFAM: Protein of unknown function DUF433; KEGG: ava:Ava_1741 hypothetical protein; hypothetical protein 1166687 11042242 Acife_1157 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783644.1 1166463 R 743299 CDS YP_004783645.1 344199319 11042243 complement(1166769..1167788) 1 NC_015942.1 KEGG: afr:AFE_3292 GDP-mannose 4,6-dehydratase; TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; GDP-mannose 4,6-dehydratase 1167788 11042243 Acife_1158 Acidithiobacillus ferrivorans SS3 GDP-mannose 4,6-dehydratase YP_004783645.1 1166769 R 743299 CDS YP_004783646.1 344199320 11044173 complement(1167785..1168669) 1 NC_015942.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: afr:AFE_3291 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 1168669 11044173 Acife_1159 Acidithiobacillus ferrivorans SS3 NAD-dependent epimerase/dehydratase YP_004783646.1 1167785 R 743299 CDS YP_004783647.1 344199321 11042244 complement(1168666..1169091) 1 NC_015942.1 hypothetical protein 1169091 11042244 Acife_1160 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783647.1 1168666 R 743299 CDS YP_004783648.1 344199322 11042245 complement(1169088..1169321) 1 NC_015942.1 hypothetical protein 1169321 11042245 Acife_1161 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783648.1 1169088 R 743299 CDS YP_004783649.1 344199323 11042246 complement(1169560..1170339) 1 NC_015942.1 KEGG: afr:AFE_2093 hypothetical protein; hypothetical protein 1170339 11042246 Acife_1162 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783649.1 1169560 R 743299 CDS YP_004783650.1 344199324 11042247 complement(1170429..1171085) 1 NC_015942.1 KEGG: bxe:Bxe_C1199 hypothetical protein; hypothetical protein 1171085 11042247 Acife_1163 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783650.1 1170429 R 743299 CDS YP_004783651.1 344199325 11044175 complement(1173287..1174744) 1 NC_015942.1 KEGG: afr:AFE_0073 undecaprenyl-phosphate galactosephosphotransferase; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; UDP-phosphate galactose phosphotransferase 1174744 11044175 Acife_1166 Acidithiobacillus ferrivorans SS3 UDP-phosphate galactose phosphotransferase YP_004783651.1 1173287 R 743299 CDS YP_004783652.1 344199326 11042249 complement(1174784..1175710) 1 NC_015942.1 PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_0082 O antigen biosynthesis rhamnosyltransferase, putative; family 2 glycosyl transferase 1175710 11042249 Acife_1167 Acidithiobacillus ferrivorans SS3 family 2 glycosyl transferase YP_004783652.1 1174784 R 743299 CDS YP_004783653.1 344199327 11042250 complement(1175776..1176825) 1 NC_015942.1 PFAM: Glycosyl transferase, group 1; KEGG: afr:AFE_0081 mannosyltransferase; group 1 glycosyl transferase 1176825 11042250 Acife_1168 Acidithiobacillus ferrivorans SS3 group 1 glycosyl transferase YP_004783653.1 1175776 R 743299 CDS YP_004783654.1 344199328 11044176 complement(1176815..1178155) 1 NC_015942.1 KEGG: btl:BALH_4774 hypothetical protein; hypothetical protein 1178155 11044176 Acife_1169 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783654.1 1176815 R 743299 CDS YP_004783655.1 344199329 11042251 complement(1178360..1179568) 1 NC_015942.1 PFAM: Glycosyl transferase, group 1; KEGG: afr:AFE_0079 glycosyltransferase, putative; group 1 glycosyl transferase 1179568 11042251 Acife_1170 Acidithiobacillus ferrivorans SS3 group 1 glycosyl transferase YP_004783655.1 1178360 R 743299 CDS YP_004783656.1 344199330 11044177 complement(1179969..1180994) 1 NC_015942.1 PFAM: Glycosyl transferase, family 2; KEGG: met:M446_4968 glycosyl transferase family protein; family 2 glycosyl transferase 1180994 11044177 Acife_1171 Acidithiobacillus ferrivorans SS3 family 2 glycosyl transferase YP_004783656.1 1179969 R 743299 CDS YP_004783657.1 344199331 11042252 complement(1180991..1182544) 1 NC_015942.1 PFAM: Polysaccharide biosynthesis protein; KEGG: ypb:YPTS_1047 O-unit flippase-like protein; polysaccharide biosynthesis protein 1182544 11042252 Acife_1172 Acidithiobacillus ferrivorans SS3 polysaccharide biosynthesis protein YP_004783657.1 1180991 R 743299 CDS YP_004783658.1 344199332 11042253 complement(1182537..1183442) 1 NC_015942.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: dhd:Dhaf_4183 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1183442 11042253 Acife_1173 Acidithiobacillus ferrivorans SS3 NAD-dependent epimerase/dehydratase YP_004783658.1 1182537 R 743299 CDS YP_004783659.1 344199333 11042254 complement(1183453..1184001) 1 NC_015942.1 KEGG: cth:Cthe_2560 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1184001 11042254 Acife_1174 Acidithiobacillus ferrivorans SS3 dTDP-4-dehydrorhamnose 3,5-epimerase YP_004783659.1 1183453 R 743299 CDS YP_004783660.1 344199334 11042255 complement(1184007..1185320) 1 NC_015942.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: bac:BamMC406_2290 DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1185320 11042255 Acife_1175 Acidithiobacillus ferrivorans SS3 DegT/DnrJ/EryC1/StrS aminotransferase YP_004783660.1 1184007 R 743299 CDS YP_004783661.1 344199335 11042256 complement(1185313..1186395) 1 NC_015942.1 KEGG: gca:Galf_2849 CDP-glucose 4,6-dehydratase; TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; CDP-glucose 4,6-dehydratase 1186395 11042256 Acife_1176 Acidithiobacillus ferrivorans SS3 CDP-glucose 4,6-dehydratase YP_004783661.1 1185313 R 743299 CDS YP_004783662.1 344199336 11042257 complement(1186377..1187147) 1 NC_015942.1 KEGG: slt:Slit_2899 glucose-1-phosphate cytidylyltransferase; TIGRFAM: Glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate cytidylyltransferase 1187147 11042257 Acife_1177 Acidithiobacillus ferrivorans SS3 glucose-1-phosphate cytidylyltransferase YP_004783662.1 1186377 R 743299 CDS YP_004783663.1 344199337 11042258 complement(1187317..1188315) 1 NC_015942.1 KEGG: afr:AFE_1342 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucose 4-epimerase 1188315 11042258 Acife_1178 Acidithiobacillus ferrivorans SS3 UDP-glucose 4-epimerase YP_004783663.1 1187317 R 743299 CDS YP_004783664.1 344199338 11044178 complement(1188312..1189076) 1 NC_015942.1 KEGG: afr:AFE_1341 protein-tyrosine phosphatase, putative; protein-tyrosine phosphatase 1189076 11044178 Acife_1179 Acidithiobacillus ferrivorans SS3 protein-tyrosine phosphatase YP_004783664.1 1188312 R 743299 CDS YP_004783665.1 344199339 11042259 complement(1189067..1191571) 1 NC_015942.1 KEGG: afr:AFE_1340 tyrosine-protein kinase, putative; TIGRFAM: Exopolysaccharide synthesis protein; PFAM: Lipopolysaccharide biosynthesis; capsular exopolysaccharide family 1191571 11042259 Acife_1180 Acidithiobacillus ferrivorans SS3 capsular exopolysaccharide family YP_004783665.1 1189067 R 743299 CDS YP_004783666.1 344199340 11042260 complement(1191581..1192708) 1 NC_015942.1 PFAM: Polysaccharide export protein; KEGG: afr:AFE_1339 polysaccharide biosynthesis/export domain protein; polysaccharide export protein 1192708 11042260 Acife_1181 Acidithiobacillus ferrivorans SS3 polysaccharide export protein YP_004783666.1 1191581 R 743299 CDS YP_004783667.1 344199341 11042261 complement(1192686..1193714) 1 NC_015942.1 KEGG: afr:AFE_1338 PAP2 family protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; phosphoesterase PA-phosphatase-like protein 1193714 11042261 Acife_1182 Acidithiobacillus ferrivorans SS3 phosphoesterase PA-phosphatase-like protein YP_004783667.1 1192686 R 743299 CDS YP_004783668.1 344199342 11042262 complement(1193724..1193999) 1 NC_015942.1 hypothetical protein 1193999 11042262 Acife_1183 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783668.1 1193724 R 743299 CDS YP_004783669.1 344199343 11044179 complement(1193962..1194435) 1 NC_015942.1 TIGRFAM: clan AA aspartic protease, AF_0612 family; KEGG: syn:slr0890 hypothetical protein; clan AA aspartic protease 1194435 11044179 Acife_1184 Acidithiobacillus ferrivorans SS3 clan AA aspartic protease YP_004783669.1 1193962 R 743299 CDS YP_004783670.1 344199344 11042264 complement(1194719..1194886) 1 NC_015942.1 hypothetical protein 1194886 11042264 Acife_1186 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783670.1 1194719 R 743299 CDS YP_004783671.1 344199345 11042265 complement(1194953..1195291) 1 NC_015942.1 PFAM: PemK-like protein; KEGG: psb:Psyr_0890 toxin ChpB; transcriptional modulator of MazE/toxin, MazF 1195291 11042265 Acife_1187 Acidithiobacillus ferrivorans SS3 transcriptional modulator of MazE/toxin, MazF YP_004783671.1 1194953 R 743299 CDS YP_004783672.1 344199346 11044180 complement(1195291..1195545) 1 NC_015942.1 PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: kva:Kvar_1641 transcriptional regulator/antitoxin, MazE; SpoVT/AbrB domain-containing protein 1195545 11044180 Acife_1188 Acidithiobacillus ferrivorans SS3 SpoVT/AbrB domain-containing protein YP_004783672.1 1195291 R 743299 CDS YP_004783673.1 344199347 11042266 complement(1195717..1196142) 1 NC_015942.1 PFAM: PilT protein, N-terminal; KEGG: tmz:Tmz1t_0480 PilT protein domain protein; PilT protein domain-containing protein 1196142 11042266 Acife_1189 Acidithiobacillus ferrivorans SS3 PilT protein domain-containing protein YP_004783673.1 1195717 R 743299 CDS YP_004783674.1 344199348 11044181 complement(1196139..1196384) 1 NC_015942.1 KEGG: tmz:Tmz1t_0479 prevent-host-death family protein; prevent-host-death family protein 1196384 11044181 Acife_1190 Acidithiobacillus ferrivorans SS3 prevent-host-death family protein YP_004783674.1 1196139 R 743299 CDS YP_004783675.1 344199349 11042267 complement(1196608..1196832) 1 NC_015942.1 KEGG: rrs:RoseRS_3426 hypothetical protein; hypothetical protein 1196832 11042267 Acife_1191 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783675.1 1196608 R 743299 CDS YP_004783676.1 344199350 11042268 complement(1196925..1197059) 1 NC_015942.1 hypothetical protein 1197059 11042268 Acife_1192 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783676.1 1196925 R 743299 CDS YP_004783677.1 344199351 11044182 1197141..1197476 1 NC_015942.1 manually curated; KEGG: afe:Lferr_0145 transposase family protein; hypothetical protein 1197476 11044182 Acife_1193 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783677.1 1197141 D 743299 CDS YP_004783678.1 344199352 11042269 complement(1197584..1199038) 1 NC_015942.1 KEGG: afr:AFE_1370 undecaprenyl-phosphate galactosephosphotransferase, putative; TIGRFAM: Undecaprenyl-phosphate galactose phosphotransferase, WbaP; Exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: Bacterial sugar transferase; UDP-phosphate galactose phosphotransferase 1199038 11042269 Acife_1194 Acidithiobacillus ferrivorans SS3 UDP-phosphate galactose phosphotransferase YP_004783678.1 1197584 R 743299 CDS YP_004783679.1 344199353 11042270 complement(1198977..1199123) 1 NC_015942.1 hypothetical protein 1199123 11042270 Acife_1195 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783679.1 1198977 R 743299 CDS YP_004783680.1 344199354 11042272 complement(1200256..1200363) 1 NC_015942.1 KEGG: avn:Avin_50240 hypothetical protein; hypothetical protein 1200363 11042272 Acife_1197 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783680.1 1200256 R 743299 CDS YP_004783681.1 344199355 11042273 complement(1200422..1200763) 1 NC_015942.1 hypothetical protein 1200763 11042273 Acife_1198 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783681.1 1200422 R 743299 CDS YP_004783682.1 344199356 11042274 complement(1200763..1200966) 1 NC_015942.1 KEGG: afe:Lferr_1002 hypothetical protein; hypothetical protein 1200966 11042274 Acife_1199 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783682.1 1200763 R 743299 CDS YP_004783683.1 344199357 11042275 1201235..1201501 1 NC_015942.1 PFAM: CopG-like DNA-binding; KEGG: psp:PSPPH_1760 ribbon-helix-helix protein domain-containing protein; DNA-binding CopG-like domain-containing protein 1201501 11042275 Acife_1200 Acidithiobacillus ferrivorans SS3 DNA-binding CopG-like domain-containing protein YP_004783683.1 1201235 D 743299 CDS YP_004783684.1 344199358 11042276 complement(1201611..1202216) 1 NC_015942.1 KEGG: vap:Vapar_4559 hypothetical protein; hypothetical protein 1202216 11042276 Acife_1201 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783684.1 1201611 R 743299 CDS YP_004783685.1 344199359 11042277 complement(1202209..1202409) 1 NC_015942.1 hypothetical protein 1202409 11042277 Acife_1202 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783685.1 1202209 R 743299 CDS YP_004783686.1 344199360 11044183 1202745..1203959 1 NC_015942.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: cph:Cpha266_2270 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1203959 11044183 Acife_1203 Acidithiobacillus ferrivorans SS3 transposase IS204/IS1001/IS1096/IS1165 family protein YP_004783686.1 1202745 D 743299 CDS YP_004783687.1 344199361 11042278 1204361..1204657 1 NC_015942.1 KEGG: ajs:Ajs_2239 addiction module antitoxin; TIGRFAM: RelB antitoxin; PFAM: RelB antitoxin; RelB/DinJ family addiction module antitoxin 1204657 11042278 Acife_1204 Acidithiobacillus ferrivorans SS3 RelB/DinJ family addiction module antitoxin YP_004783687.1 1204361 D 743299 CDS YP_004783688.1 344199362 11042279 1204644..1204880 1 NC_015942.1 PFAM: Plasmid stabilisation system; KEGG: ajs:Ajs_2238 addiction module antitoxin; plasmid stabilization system 1204880 11042279 Acife_1205 Acidithiobacillus ferrivorans SS3 plasmid stabilization system YP_004783688.1 1204644 D 743299 CDS YP_004783689.1 344199363 11042280 1204899..1205165 1 NC_015942.1 hypothetical protein 1205165 11042280 Acife_1206 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783689.1 1204899 D 743299 CDS YP_004783690.1 344199364 11044184 1205417..1206043 1 NC_015942.1 KEGG: afr:AFE_2212 hypothetical protein; hypothetical protein 1206043 11044184 Acife_1207 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783690.1 1205417 D 743299 CDS YP_004783691.1 344199365 11042282 complement(1206058..1207134) 1 NC_015942.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase, N-terminal; KEGG: afr:AFE_2211 oxidoreductase, FAD/FMN-binding; NADH:flavin oxidoreductase/NADH oxidase 1207134 11042282 Acife_1208 Acidithiobacillus ferrivorans SS3 NADH:flavin oxidoreductase/NADH oxidase YP_004783691.1 1206058 R 743299 CDS YP_004783692.1 344199366 11044185 complement(1207131..1207859) 1 NC_015942.1 PFAM: Dienelactone hydrolase; KEGG: afr:AFE_2210 carboxymethylenebutenolidase family protein; dienelactone hydrolase 1207859 11044185 Acife_1209 Acidithiobacillus ferrivorans SS3 dienelactone hydrolase YP_004783692.1 1207131 R 743299 CDS YP_004783693.1 344199367 11044186 complement(1207949..1208566) 1 NC_015942.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: afr:AFE_2209 transcriptional regulator, TetR family; TetR family transcriptional regulator 1208566 11044186 Acife_1210 Acidithiobacillus ferrivorans SS3 TetR family transcriptional regulator YP_004783693.1 1207949 R 743299 CDS YP_004783694.1 344199368 11042284 complement(1209967..1210794) 1 NC_015942.1 KEGG: afr:AFE_2206 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: Nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; nicotinate-nucleotide pyrophosphorylase 1210794 11042284 Acife_1212 Acidithiobacillus ferrivorans SS3 nicotinate-nucleotide pyrophosphorylase YP_004783694.1 1209967 R 743299 CDS YP_004783695.1 344199369 11042285 complement(1210791..1212140) 1 NC_015942.1 TIGRFAM: Na+/H+ antiporter NhaA; HAMAP: Na+/H+ antiporter NhaA; KEGG: afe:Lferr_1861 Na+/H+ antiporter NhaA; PFAM: Na+/H+ antiporter NhaA; Na(+)/H(+) antiporter nhaA 1212140 11042285 Acife_1213 Acidithiobacillus ferrivorans SS3 Na(+)/H(+) antiporter nhaA YP_004783695.1 1210791 R 743299 CDS YP_004783696.1 344199370 11044187 complement(1212159..1214975) 1 NC_015942.1 TIGRFAM: Valyl-tRNA synthetase, class Ia; HAMAP: Valyl-tRNA synthetase; KEGG: afr:AFE_2204 valyl-tRNA synthetase; Valyl-tRNA synthetase 1214975 11044187 Acife_1214 Acidithiobacillus ferrivorans SS3 Valyl-tRNA synthetase YP_004783696.1 1212159 R 743299 CDS YP_004783697.1 344199371 11044188 complement(1214987..1215511) 1 NC_015942.1 KEGG: afe:Lferr_1859 hypothetical protein; hypothetical protein 1215511 11044188 Acife_1215 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783697.1 1214987 R 743299 CDS YP_004783698.1 344199372 11042286 complement(1215526..1215951) 1 NC_015942.1 PFAM: DNA polymerase III chi subunit, HolC; KEGG: afr:AFE_2203 DNA polymerase III, chi subunit; DNA polymerase III chi subunit HolC 1215951 11042286 Acife_1216 Acidithiobacillus ferrivorans SS3 DNA polymerase III chi subunit HolC YP_004783698.1 1215526 R 743299 CDS YP_004783699.1 344199373 11042287 complement(1215964..1217466) 1 NC_015942.1 KEGG: afr:AFE_2201 cytosol aminopeptidase; HAMAP: cytosol aminopeptidase; PFAM: Peptidase M17, leucyl aminopeptidase, C-terminal; Peptidase M17, leucyl aminopeptidase, N-terminal; cytosol aminopeptidase 1217466 11042287 Acife_1217 Acidithiobacillus ferrivorans SS3 cytosol aminopeptidase YP_004783699.1 1215964 R 743299 CDS YP_004783700.1 344199374 11042288 1217599..1218705 1 NC_015942.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: afr:AFE_2200 YjgP/YjgQ family protein; permease YjgP/YjgQ family protein 1218705 11042288 Acife_1218 Acidithiobacillus ferrivorans SS3 permease YjgP/YjgQ family protein YP_004783700.1 1217599 D 743299 CDS YP_004783701.1 344199375 11042289 1218702..1219775 1 NC_015942.1 PFAM: Permease YjgP/YjgQ, predicted; KEGG: afr:AFE_2199 YjgP/YjgQ family protein; permease YjgP/YjgQ family protein 1219775 11042289 Acife_1219 Acidithiobacillus ferrivorans SS3 permease YjgP/YjgQ family protein YP_004783701.1 1218702 D 743299 CDS YP_004783702.1 344199376 11044189 complement(1219768..1220112) 1 NC_015942.1 KEGG: afe:Lferr_1854 hypothetical protein; hypothetical protein 1220112 11044189 Acife_1220 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783702.1 1219768 R 743299 CDS YP_004783703.1 344199377 11044190 complement(1220127..1220819) 1 NC_015942.1 KEGG: tgr:Tgr7_2771 glutathione S-transferase domain protein; glutathione S-transferase domain-containing protein 1220819 11044190 Acife_1221 Acidithiobacillus ferrivorans SS3 glutathione S-transferase domain-containing protein YP_004783703.1 1220127 R 743299 CDS YP_004783704.1 344199378 11042290 complement(1220828..1221280) 1 NC_015942.1 PFAM: Uncharacterised protein family UPF0310; KEGG: afr:AFE_2196 hypothetical protein; hypothetical protein 1221280 11042290 Acife_1222 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783704.1 1220828 R 743299 CDS YP_004783705.1 344199379 11042291 complement(1221285..1221599) 1 NC_015942.1 KEGG: afr:AFE_2195 CyaY protein; TIGRFAM: Frataxin-like; PFAM: Frataxin-like; iron donor protein CyaY 1221599 11042291 Acife_1223 Acidithiobacillus ferrivorans SS3 iron donor protein CyaY YP_004783705.1 1221285 R 743299 CDS YP_004783706.1 344199380 11044191 complement(1221687..1223483) 1 NC_015942.1 TIGRFAM: DNA helicase, ATP-dependent, RecQ type, bacterial; DNA helicase, ATP-dependent, RecQ type, N-terminal; PFAM: RQC domain; DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; KEGG: afr:AFE_2194 ATP-dependent DNA helicase RecQ; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; Helicase/RNase D C-terminal, HRDC domain; ATP-dependent DNA helicase RecQ 1223483 11044191 Acife_1224 Acidithiobacillus ferrivorans SS3 ATP-dependent DNA helicase RecQ YP_004783706.1 1221687 R 743299 CDS YP_004783707.1 344199381 11044192 complement(1223486..1224325) 1 NC_015942.1 PFAM: Metallophosphoesterase; KEGG: afr:AFE_2193 diadenosine tetraphosphatase; metallophosphoesterase 1224325 11044192 Acife_1225 Acidithiobacillus ferrivorans SS3 metallophosphoesterase YP_004783707.1 1223486 R 743299 CDS YP_004783708.1 344199382 11042292 complement(1224329..1224676) 1 NC_015942.1 KEGG: afr:AFE_2192 hypothetical protein; hypothetical protein 1224676 11042292 Acife_1226 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783708.1 1224329 R 743299 CDS YP_004783709.1 344199383 11042293 1224969..1225772 1 NC_015942.1 PFAM: Binding-protein-dependent transport systems inner membrane component; KEGG: afr:AFE_2190 ABC transporter, permease protein; ABC transporter permease 1225772 11042293 Acife_1227 Acidithiobacillus ferrivorans SS3 ABC transporter permease YP_004783709.1 1224969 D 743299 CDS YP_004783710.1 344199384 11042294 1225791..1226798 1 NC_015942.1 KEGG: afe:Lferr_1847 ABC transporter-like protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 1226798 11042294 Acife_1228 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004783710.1 1225791 D 743299 CDS YP_004783711.1 344199385 11042295 1226928..1227218 1 NC_015942.1 TIGRFAM: Ribosomal protein S20; HAMAP: Ribosomal protein S20; KEGG: afr:AFE_2188 30S ribosomal protein S20; PFAM: Ribosomal protein S20; 30S ribosomal protein S20 1227218 11042295 Acife_1229 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S20 YP_004783711.1 1226928 D 743299 CDS YP_004783712.1 344199386 11044193 complement(1227319..1229304) 1 NC_015942.1 PFAM: DNA helicase, UvrD/REP type; KEGG: afr:AFE_2187 ATP-dependent DNA helicase Rep; UvrD/REP helicase 1229304 11044193 Acife_1230 Acidithiobacillus ferrivorans SS3 UvrD/REP helicase YP_004783712.1 1227319 R 743299 CDS YP_004783713.1 344199387 11044194 complement(1229328..1230146) 1 NC_015942.1 TIGRFAM: Prolipoprotein diacylglyceryl transferase; HAMAP: Prolipoprotein diacylglyceryl transferase; KEGG: afr:AFE_2186 prolipoprotein diacylglyceryl transferase; PFAM: Prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 1230146 11044194 Acife_1231 Acidithiobacillus ferrivorans SS3 prolipoprotein diacylglyceryl transferase YP_004783713.1 1229328 R 743299 CDS YP_004783714.1 344199388 11042296 complement(1230217..1231248) 1 NC_015942.1 PFAM: Peptidyl-arginine deiminase, Porphyromonas-type; KEGG: afr:AFE_2176 peptidyl-arginine deiminase; peptidyl-arginine deiminase 1231248 11042296 Acife_1232 Acidithiobacillus ferrivorans SS3 peptidyl-arginine deiminase YP_004783714.1 1230217 R 743299 CDS YP_004783715.1 344199389 11042297 1231336..1232049 1 NC_015942.1 TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: afr:AFE_2175 ribosomal small subunit pseudouridine synthase A; SMART: RNA-binding S4; pseudouridine synthase Rsu 1232049 11042297 Acife_1233 Acidithiobacillus ferrivorans SS3 pseudouridine synthase Rsu YP_004783715.1 1231336 D 743299 CDS YP_004783716.1 344199390 11042298 1232046..1232495 1 NC_015942.1 PFAM: NUDIX hydrolase domain; KEGG: afr:AFE_2174 NUDIX hydrolase; NUDIX hydrolase 1232495 11042298 Acife_1234 Acidithiobacillus ferrivorans SS3 NUDIX hydrolase YP_004783716.1 1232046 D 743299 CDS YP_004783717.1 344199391 11042299 1232553..1233077 1 NC_015942.1 KEGG: afr:AFE_2173 NUDIX hydrolase; HAMAP: RNA pyrophosphohydrolase; PFAM: NUDIX hydrolase domain; RNA pyrophosphohydrolase 1233077 11042299 Acife_1235 Acidithiobacillus ferrivorans SS3 RNA pyrophosphohydrolase YP_004783717.1 1232553 D 743299 CDS YP_004783718.1 344199392 11044195 complement(1233053..1234519) 1 NC_015942.1 KEGG: afr:AFE_2171 GTP-binding protein; GTP-binding protein 1234519 11044195 Acife_1236 Acidithiobacillus ferrivorans SS3 GTP-binding protein YP_004783718.1 1233053 R 743299 CDS YP_004783719.1 344199393 11042300 complement(1234486..1235322) 1 NC_015942.1 PFAM: Polysaccharide deacetylase; KEGG: afe:Lferr_1828 polysaccharide deacetylase; polysaccharide deacetylase 1235322 11042300 Acife_1237 Acidithiobacillus ferrivorans SS3 polysaccharide deacetylase YP_004783719.1 1234486 R 743299 CDS YP_004783720.1 344199394 11042301 1235523..1236320 1 NC_015942.1 KEGG: afr:AFE_2160 hypothetical protein; hypothetical protein 1236320 11042301 Acife_1238 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783720.1 1235523 D 743299 CDS YP_004783721.1 344199395 11042302 1236406..1237317 1 NC_015942.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afe:Lferr_1817 LysR family transcriptional regulator; LysR family transcriptional regulator 1237317 11042302 Acife_1239 Acidithiobacillus ferrivorans SS3 LysR family transcriptional regulator YP_004783721.1 1236406 D 743299 CDS YP_004783722.1 344199396 11042303 complement(1237325..1239604) 1 NC_015942.1 KEGG: afr:AFE_2157 von Willebrand factor type A domain protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; von Willebrand factor type A 1239604 11042303 Acife_1240 Acidithiobacillus ferrivorans SS3 von Willebrand factor type A YP_004783722.1 1237325 R 743299 CDS YP_004783723.1 344199397 11042304 complement(1239627..1240445) 1 NC_015942.1 KEGG: afr:AFE_2156 CbbQ protein; CbbQ protein 1240445 11042304 Acife_1241 Acidithiobacillus ferrivorans SS3 CbbQ protein YP_004783723.1 1239627 R 743299 CDS YP_004783724.1 344199398 11044196 complement(1240596..1241975) 1 NC_015942.1 KEGG: afr:AFE_2155 ribulose bisphosphate carboxylase; HAMAP: Ribulose bisphosphate carboxylase; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal; ribulose bisphosphate carboxylase 1241975 11044196 Acife_1242 Acidithiobacillus ferrivorans SS3 ribulose bisphosphate carboxylase YP_004783724.1 1240596 R 743299 CDS YP_004783725.1 344199399 11044197 complement(1242229..1242726) 1 NC_015942.1 PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; KEGG: afr:AFE_2154 hydrogenase-4, I subunit; NADH ubiquinone oxidoreductase 20 kDa subunit 1242726 11044197 Acife_1243 Acidithiobacillus ferrivorans SS3 NADH ubiquinone oxidoreductase 20 kDa subunit YP_004783725.1 1242229 R 743299 CDS YP_004783726.1 344199400 11042305 complement(1242763..1244313) 1 NC_015942.1 PFAM: NADH-quinone oxidoreductase, subunit D; NADH:ubiquinone oxidoreductase, 30kDa subunit; KEGG: afr:AFE_2153 hydrogenase-4, G subunit; NADH-ubiquinone oxidoreductase chain 49kDa 1244313 11042305 Acife_1244 Acidithiobacillus ferrivorans SS3 NADH-ubiquinone oxidoreductase chain 49kDa YP_004783726.1 1242763 R 743299 CDS YP_004783727.1 344199401 11042306 complement(1244324..1245778) 1 NC_015942.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; KEGG: afr:AFE_2152 hydrogenase 4 subunit F; NADH/Ubiquinone/plastoquinone (complex I) 1245778 11042306 Acife_1245 Acidithiobacillus ferrivorans SS3 NADH/Ubiquinone/plastoquinone (complex I) YP_004783727.1 1244324 R 743299 CDS YP_004783728.1 344199402 11042307 complement(1245778..1246455) 1 NC_015942.1 KEGG: afr:AFE_2151 hydrogenase-4, E subunit; hydrogenase-4 subunit E 1246455 11042307 Acife_1246 Acidithiobacillus ferrivorans SS3 hydrogenase-4 subunit E YP_004783728.1 1245778 R 743299 CDS YP_004783729.1 344199403 11042308 complement(1246457..1247398) 1 NC_015942.1 KEGG: afr:AFE_2150 hydrogenase-4, C subunit; hydrogenase-4 subunit C 1247398 11042308 Acife_1247 Acidithiobacillus ferrivorans SS3 hydrogenase-4 subunit C YP_004783729.1 1246457 R 743299 CDS YP_004783730.1 344199404 11042309 complement(1247395..1249377) 1 NC_015942.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; KEGG: afr:AFE_2149 hydrogenase 4 subunit B; NADH/Ubiquinone/plastoquinone (complex I) 1249377 11042309 Acife_1248 Acidithiobacillus ferrivorans SS3 NADH/Ubiquinone/plastoquinone (complex I) YP_004783730.1 1247395 R 743299 CDS YP_004783731.1 344199405 11042310 complement(1249374..1249919) 1 NC_015942.1 KEGG: afr:AFE_2148 DNA-binding protein, putative; PFAM: Helix-turn-helix type 3; Cupin 2, conserved barrel; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 1249919 11042310 Acife_1249 Acidithiobacillus ferrivorans SS3 helix-turn-helix domain-containing protein YP_004783731.1 1249374 R 743299 CDS YP_004783732.1 344199406 11042311 complement(1249977..1251068) 1 NC_015942.1 KEGG: afr:AFE_2147 GTP-binding protein YchF; TIGRFAM: Conserved hypothetical protein CHP00092; PFAM: Protein of unknown function DUF933; GTP-binding protein, HSR1-related; GTP-binding protein YchF 1251068 11042311 Acife_1250 Acidithiobacillus ferrivorans SS3 GTP-binding protein YchF YP_004783732.1 1249977 R 743299 CDS YP_004783733.1 344199407 11042312 complement(1251078..1251647) 1 NC_015942.1 TIGRFAM: Peptidyl-tRNA hydrolase; HAMAP: Peptidyl-tRNA hydrolase; KEGG: afr:AFE_2146 peptidyl-tRNA hydrolase; PFAM: Peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase 1251647 11042312 Acife_1251 Acidithiobacillus ferrivorans SS3 peptidyl-tRNA hydrolase YP_004783733.1 1251078 R 743299 CDS YP_004783734.1 344199408 11042313 complement(1251654..1252262) 1 NC_015942.1 TIGRFAM: Ribosomal protein L25; HAMAP: 50S ribosomal protein L25; Ribosomal protein L25; KEGG: afr:AFE_2145 ribosomal protein L25; PFAM: Ribosomal protein L25, N-terminal; 50S ribosomal protein L25 1252262 11042313 Acife_1252 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L25 YP_004783734.1 1251654 R 743299 CDS YP_004783735.1 344199409 11042314 complement(1252275..1254188) 1 NC_015942.1 KEGG: afr:AFE_2144 penicillin-binding protein 2, putative; TIGRFAM: Penicillin-binding protein 2; PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; penicillin-binding protein 2 1254188 11042314 Acife_1253 Acidithiobacillus ferrivorans SS3 penicillin-binding protein 2 YP_004783735.1 1252275 R 743299 CDS YP_004783736.1 344199410 11042315 1254255..1254515 1 NC_015942.1 KEGG: afr:AFE_2143 hypothetical protein; hypothetical protein 1254515 11042315 Acife_1254 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783736.1 1254255 D 743299 CDS YP_004783737.1 344199411 11044198 1254537..1254851 1 NC_015942.1 PFAM: Cell division protein ZapA-like; KEGG: afr:AFE_2142 hypothetical protein; hypothetical protein 1254851 11044198 Acife_1255 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783737.1 1254537 D 743299 CDS YP_004783738.1 344199412 11042317 1255095..1255658 1 NC_015942.1 KEGG: afr:AFE_2140 5-formyltetrahydrofolate cyclo-ligase family protein; TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 1255658 11042317 Acife_1256 Acidithiobacillus ferrivorans SS3 5-formyltetrahydrofolate cyclo-ligase YP_004783738.1 1255095 D 743299 CDS YP_004783739.1 344199413 11042319 complement(1255831..1257606) 1 NC_015942.1 PFAM: Peptidase M61; KEGG: afr:AFE_2138 PDZ domain protein; peptidase M61 domain-containing protein 1257606 11042319 Acife_1258 Acidithiobacillus ferrivorans SS3 peptidase M61 domain-containing protein YP_004783739.1 1255831 R 743299 CDS YP_004783740.1 344199414 11042320 complement(1257617..1257916) 1 NC_015942.1 KEGG: afr:AFE_2137 hydrolase, isochorismatase family; hypothetical protein 1257916 11042320 Acife_1259 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783740.1 1257617 R 743299 CDS YP_004783741.1 344199415 11042321 complement(1257923..1258576) 1 NC_015942.1 PFAM: Protein-L-isoaspartate(D-aspartate) O-methyltransferase; KEGG: afr:AFE_2136 protein-L-isoaspartate O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 1258576 11042321 Acife_1260 Acidithiobacillus ferrivorans SS3 protein-L-isoaspartate(D-aspartate) O-methyltransferase YP_004783741.1 1257923 R 743299 CDS YP_004783742.1 344199416 11042322 1258727..1259665 1 NC_015942.1 PFAM: Mammalian cell entry related; KEGG: afr:AFE_2135 mce-related protein; mammalian cell entry related domain-containing protein 1259665 11042322 Acife_1261 Acidithiobacillus ferrivorans SS3 mammalian cell entry related domain-containing protein YP_004783742.1 1258727 D 743299 CDS YP_004783743.1 344199417 11044199 1259670..1260335 1 NC_015942.1 PFAM: Protein of unknown function DUF330; KEGG: afr:AFE_2134 lipoprotein, putative; hypothetical protein 1260335 11044199 Acife_1262 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783743.1 1259670 D 743299 CDS YP_004783744.1 344199418 11042323 complement(1260345..1260821) 1 NC_015942.1 PFAM: UspA; KEGG: afr:AFE_2133 universal stress family protein; UspA domain-containing protein 1260821 11042323 Acife_1263 Acidithiobacillus ferrivorans SS3 UspA domain-containing protein YP_004783744.1 1260345 R 743299 CDS YP_004783745.1 344199419 11042324 complement(1260814..1262526) 1 NC_015942.1 TIGRFAM: Prolyl-tRNA synthetase, class IIa, bacterial; HAMAP: Prolyl-tRNA synthetase; KEGG: afr:AFE_2132 prolyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; YbaK/aminoacyl-tRNA synthetase associated region; Anticodon-binding; prolyl-tRNA synthetase 1262526 11042324 Acife_1264 Acidithiobacillus ferrivorans SS3 prolyl-tRNA synthetase YP_004783745.1 1260814 R 743299 CDS YP_004783746.1 344199420 11042325 1262645..1262980 1 NC_015942.1 hypothetical protein 1262980 11042325 Acife_1265 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783746.1 1262645 D 743299 CDS YP_004783747.1 344199421 11042326 complement(1263095..1264297) 1 NC_015942.1 PFAM: Acyltransferase 3; KEGG: dmr:Deima_1375 acyltransferase 3; acyltransferase 3 1264297 11042326 Acife_1266 Acidithiobacillus ferrivorans SS3 acyltransferase 3 YP_004783747.1 1263095 R 743299 CDS YP_004783748.1 344199422 11044201 1264895..1265344 1 NC_015942.1 TIGRFAM: Bacterial protein export chaperone SecB; HAMAP: Bacterial protein export chaperone SecB; KEGG: afr:AFE_2127 preprotein translocase, SecB subunit; PFAM: Bacterial protein export chaperone SecB; protein-export protein secB 1265344 11044201 Acife_1267 Acidithiobacillus ferrivorans SS3 protein-export protein secB YP_004783748.1 1264895 D 743299 CDS YP_004783749.1 344199423 11042327 1265348..1266376 1 NC_015942.1 KEGG: afr:AFE_2126 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; HAMAP: Glycerol-3-phosphate dehydrogenase [NAD(P)+]; PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase, C-terminal; NAD-dependent glycerol-3-phosphate dehydrogenase, N-terminal; glycerol-3-phosphate dehydrogenase (NAD(P)+) 1266376 11042327 Acife_1268 Acidithiobacillus ferrivorans SS3 glycerol-3-phosphate dehydrogenase (NAD(P)+) YP_004783749.1 1265348 D 743299 CDS YP_004783750.1 344199424 11042328 1266518..1267561 1 NC_015942.1 PFAM: Squalene/phytoene synthase; KEGG: afr:AFE_2125 phytoene/squalene synthetase family protein; Squalene/phytoene synthase 1267561 11042328 Acife_1269 Acidithiobacillus ferrivorans SS3 Squalene/phytoene synthase YP_004783750.1 1266518 D 743299 CDS YP_004783751.1 344199425 11042329 1267558..1269489 1 NC_015942.1 KEGG: afr:AFE_2124 squalene-hopene cyclase; TIGRFAM: Hopene cyclase; Squalene cyclase; PFAM: Prenyltransferase/squalene oxidase; squalene-hopene cyclase 1269489 11042329 Acife_1270 Acidithiobacillus ferrivorans SS3 squalene-hopene cyclase YP_004783751.1 1267558 D 743299 CDS YP_004783752.1 344199426 11042330 1269471..1270178 1 NC_015942.1 KEGG: afr:AFE_2123 MTA/SAH nucleosidase, putative; TIGRFAM: Hopanoid-associated phosphorylase HpnG; PFAM: Nucleoside phosphorylase; hopanoid-associated phosphorylase 1270178 11042330 Acife_1271 Acidithiobacillus ferrivorans SS3 hopanoid-associated phosphorylase YP_004783752.1 1269471 D 743299 CDS YP_004783753.1 344199427 11042331 1270175..1271164 1 NC_015942.1 KEGG: afr:AFE_2122 hypothetical protein; TIGRFAM: Hopanoid-associated sugar epimerase; PFAM: NAD-dependent epimerase/dehydratase; hopanoid-associated sugar epimerase 1271164 11042331 Acife_1272 Acidithiobacillus ferrivorans SS3 hopanoid-associated sugar epimerase YP_004783753.1 1270175 D 743299 CDS YP_004783754.1 344199428 11044202 1271225..1272361 1 NC_015942.1 KEGG: afr:AFE_2121 glycosyl transferase, group 2 family protein; TIGRFAM: Glycosyl transferase, family 2, hopene-associated, HpnI; PFAM: Glycosyl transferase, family 2; hopanoid biosynthesis associated glycosyl transferase protein HpnI 1272361 11044202 Acife_1273 Acidithiobacillus ferrivorans SS3 hopanoid biosynthesis associated glycosyl transferase protein HpnI YP_004783754.1 1271225 D 743299 CDS YP_004783755.1 344199429 11042332 1272361..1273791 1 NC_015942.1 TIGRFAM: Hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: Radical SAM; KEGG: afr:AFE_2120 radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; hopanoid biosynthesis associated radical SAM protein HpnJ 1273791 11042332 Acife_1274 Acidithiobacillus ferrivorans SS3 hopanoid biosynthesis associated radical SAM protein HpnJ YP_004783755.1 1272361 D 743299 CDS YP_004783756.1 344199430 11042333 1273793..1274668 1 NC_015942.1 KEGG: afr:AFE_2119 hypothetical protein; TIGRFAM: Hopanoid biosynthesis associated protein HpnK; PFAM: YdjC-like protein; hopanoid biosynthesis associated protein HpnK 1274668 11042333 Acife_1275 Acidithiobacillus ferrivorans SS3 hopanoid biosynthesis associated protein HpnK YP_004783756.1 1273793 D 743299 CDS YP_004783757.1 344199431 11042334 1274649..1277351 1 NC_015942.1 TIGRFAM: Hopanoid biosynthesis associated RND transporter like protein HpnN; KEGG: afe:Lferr_1777 hopanoid biosynthesis associated RND transporter-like protein HpnN; hopanoid biosynthesis associated RND transporter like protein HpnN 1277351 11042334 Acife_1276 Acidithiobacillus ferrivorans SS3 hopanoid biosynthesis associated RND transporter like protein HpnN YP_004783757.1 1274649 D 743299 CDS YP_004783758.1 344199432 11042335 1277338..1278375 1 NC_015942.1 TIGRFAM: membrane protein; Lysylphosphatidylglycerol synthetase/UPF0104; KEGG: afe:Lferr_1776 membrane protein; membrane protein 1278375 11042335 Acife_1277 Acidithiobacillus ferrivorans SS3 membrane protein YP_004783758.1 1277338 D 743299 CDS YP_004783759.1 344199433 11044203 1278526..1279629 1 NC_015942.1 KEGG: afr:AFE_2115 radical SAM domain protein; TIGRFAM: Hopanoid biosynthesis associated radical SAM protein HpnH; PFAM: Radical SAM; hopanoid biosynthesis associated radical SAM protein HpnH 1279629 11044203 Acife_1278 Acidithiobacillus ferrivorans SS3 hopanoid biosynthesis associated radical SAM protein HpnH YP_004783759.1 1278526 D 743299 CDS YP_004783760.1 344199434 11044204 1279677..1280345 1 NC_015942.1 KEGG: afr:AFE_2114 hypothetical protein; TIGRFAM: Hopanoid biosynthesis-associated membrane protein HpnM; PFAM: Toluene tolerance; hopanoid biosynthesis associated membrane protein HpnM 1280345 11044204 Acife_1279 Acidithiobacillus ferrivorans SS3 hopanoid biosynthesis associated membrane protein HpnM YP_004783760.1 1279677 D 743299 CDS YP_004783761.1 344199435 11042336 1280342..1281148 1 NC_015942.1 PFAM: VacJ-like lipoprotein; KEGG: afe:Lferr_1772 VacJ family lipoprotein; VacJ family lipoprotein 1281148 11042336 Acife_1280 Acidithiobacillus ferrivorans SS3 VacJ family lipoprotein YP_004783761.1 1280342 D 743299 CDS YP_004783762.1 344199436 11042337 1281151..1281438 1 NC_015942.1 TIGRFAM: Glu-tRNAGln amidotransferase, C subunit; HAMAP: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C; KEGG: afr:AFE_2112 glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C 1281438 11042337 Acife_1281 Acidithiobacillus ferrivorans SS3 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C YP_004783762.1 1281151 D 743299 CDS YP_004783763.1 344199437 11042338 1281448..1282920 1 NC_015942.1 TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase A subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase A subunit; KEGG: afr:AFE_2111 aspartyl/glutamyl-tRNA amidotransferase subunit A; PFAM: Amidase; glutamyl-tRNA(Gln) amidotransferase subunit A 1282920 11042338 Acife_1282 Acidithiobacillus ferrivorans SS3 glutamyl-tRNA(Gln) amidotransferase subunit A YP_004783763.1 1281448 D 743299 CDS YP_004783764.1 344199438 11042339 1282923..1284353 1 NC_015942.1 PFAM: Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, N-terminal; Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, central region; Asn/Gln amidotransferase; manually curated; TIGRFAM: Glutamyl-tRNA(Gln) amidotransferase, B subunit; KEGG: afr:AFE_2110 glutamyl-tRNA(Gln)/aspartyl-tRNA(Asn) amidotransferase, B subunit; HAMAP: Glutamyl-tRNA(Gln) amidotransferase, B subunit; aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B 1284353 11042339 Acife_1283 Acidithiobacillus ferrivorans SS3 aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B YP_004783764.1 1282923 D 743299 CDS YP_004783765.1 344199439 11044205 complement(1284427..1284975) 1 NC_015942.1 KEGG: afe:Lferr_1768 hypothetical protein; hypothetical protein 1284975 11044205 Acife_1284 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783765.1 1284427 R 743299 CDS YP_004783766.1 344199440 11042340 1285937..1287196 1 NC_015942.1 KEGG: afr:AFE_1433 ATP-dependent RNA helicase RhlE; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; DEAD/DEAH box helicase domain-containing protein 1287196 11042340 Acife_1285 Acidithiobacillus ferrivorans SS3 DEAD/DEAH box helicase domain-containing protein YP_004783766.1 1285937 D 743299 CDS YP_004783767.1 344199441 11042341 1287316..1288026 1 NC_015942.1 TIGRFAM: Signal transduction response regulator, phosphate regulon transcriptional regulatory protein phoB; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; KEGG: afr:AFE_1434 DNA-binding response regulator PhoB; SMART: Signal transduction response regulator, receiver region; two component transcriptional regulator PhoB, winged helix family 1288026 11042341 Acife_1286 Acidithiobacillus ferrivorans SS3 two component transcriptional regulator PhoB, winged helix family YP_004783767.1 1287316 D 743299 CDS YP_004783768.1 344199442 11042342 1288007..1289437 1 NC_015942.1 TIGRFAM: Signal transduction histidine kinase, phosphate regulon sensor PhoR; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; KEGG: afr:AFE_1435 phosphate regulon sensor protein PhoR; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; multi-sensor signal transduction histidine kinase 1289437 11042342 Acife_1287 Acidithiobacillus ferrivorans SS3 multi-sensor signal transduction histidine kinase YP_004783768.1 1288007 D 743299 CDS YP_004783769.1 344199443 11044206 1289522..1290526 1 NC_015942.1 KEGG: afr:AFE_1436 phosphate ABC transporter, periplasmic phosphate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1; phosphate ABC transporter substrate-binding protein 1290526 11044206 Acife_1288 Acidithiobacillus ferrivorans SS3 phosphate ABC transporter substrate-binding protein YP_004783769.1 1289522 D 743299 CDS YP_004783770.1 344199444 11042343 1290535..1291557 1 NC_015942.1 KEGG: afe:Lferr_1154 phosphate ABC transporter inner membrane subunit PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 1291557 11042343 Acife_1289 Acidithiobacillus ferrivorans SS3 phosphate ABC transporter permease YP_004783770.1 1290535 D 743299 CDS YP_004783771.1 344199445 11042344 1291554..1292408 1 NC_015942.1 KEGG: afr:AFE_1438 phosphate ABC transporter, permease protein PstA; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 1292408 11042344 Acife_1290 Acidithiobacillus ferrivorans SS3 phosphate ABC transporter permease YP_004783771.1 1291554 D 743299 CDS YP_004783772.1 344199446 11042345 1292408..1293175 1 NC_015942.1 TIGRFAM: Phosphate transport system permease protein 1; PFAM: ABC transporter-like; KEGG: afr:AFE_1439 phosphate ABC transporter, ATP-binding protein; SMART: ATPase, AAA+ type, core; phosphate ABC transporter ATPase 1293175 11042345 Acife_1291 Acidithiobacillus ferrivorans SS3 phosphate ABC transporter ATPase YP_004783772.1 1292408 D 743299 CDS YP_004783773.1 344199447 11042346 1293187..1293900 1 NC_015942.1 KEGG: afr:AFE_1440 phosphate transport system protein PhoU; TIGRFAM: PhoU; PFAM: PhoU; phosphate uptake regulator PhoU 1293900 11042346 Acife_1292 Acidithiobacillus ferrivorans SS3 phosphate uptake regulator PhoU YP_004783773.1 1293187 D 743299 CDS YP_004783774.1 344199448 11042347 1293903..1295414 1 NC_015942.1 PFAM: Ppx/GppA phosphatase; KEGG: afr:AFE_1441 exopolyphosphatase; Ppx/GppA phosphatase 1295414 11042347 Acife_1293 Acidithiobacillus ferrivorans SS3 Ppx/GppA phosphatase YP_004783774.1 1293903 D 743299 CDS YP_004783775.1 344199449 11042348 1295458..1296594 1 NC_015942.1 PFAM: Glycosyl transferase, group 1; KEGG: afe:Lferr_1142 group 1 glycosyl transferase; group 1 glycosyl transferase 1296594 11042348 Acife_1294 Acidithiobacillus ferrivorans SS3 group 1 glycosyl transferase YP_004783775.1 1295458 D 743299 CDS YP_004783776.1 344199450 11044207 1296691..1297290 1 NC_015942.1 PFAM: SNARE associated Golgi protein; KEGG: afr:AFE_1443 membrane protein, DedA family; hypothetical protein 1297290 11044207 Acife_1295 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783776.1 1296691 D 743299 CDS YP_004783777.1 344199451 11042349 1297498..1298250 1 NC_015942.1 KEGG: afr:AFE_1444 ribosomal protein S2; TIGRFAM: Ribosomal protein S2, bacteria/mitochondria/plastid; PFAM: Ribosomal protein S2; 30S ribosomal protein S2 1298250 11042349 Acife_1296 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S2 YP_004783777.1 1297498 D 743299 CDS YP_004783778.1 344199452 11042350 1298278..1299156 1 NC_015942.1 TIGRFAM: Translation elongation factor EFTs/EF1B; HAMAP: Elongation factor Ts; KEGG: afr:AFE_1445 elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B, dimerisation; Ubiquitin-associated/translation elongation factor EF1B, N-terminal; elongation factor Ts 1299156 11042350 Acife_1297 Acidithiobacillus ferrivorans SS3 elongation factor Ts YP_004783778.1 1298278 D 743299 CDS YP_004783779.1 344199453 11044208 1299157..1299882 1 NC_015942.1 KEGG: afr:AFE_1446 uridylate kinase; TIGRFAM: Uridylate kinase, bacteria; PFAM: Aspartate/glutamate/uridylate kinase; uridylate kinase 1299882 11044208 Acife_1298 Acidithiobacillus ferrivorans SS3 uridylate kinase YP_004783779.1 1299157 D 743299 CDS YP_004783780.1 344199454 11042351 1299879..1300439 1 NC_015942.1 TIGRFAM: Ribosome recycling factor; HAMAP: Ribosome recycling factor, bacterial-like; KEGG: afr:AFE_1447 ribosome recycling factor; PFAM: Ribosome recycling factor; ribosome-recycling factor 1300439 11042351 Acife_1299 Acidithiobacillus ferrivorans SS3 ribosome-recycling factor YP_004783780.1 1299879 D 743299 CDS YP_004783781.1 344199455 11042352 1300443..1301204 1 NC_015942.1 TIGRFAM: Di-trans-poly-cis-decaprenylcistransferase-like; HAMAP: Undecaprenyl pyrophosphate synthase; KEGG: afe:Lferr_1164 undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; UDP pyrophosphate synthase 1301204 11042352 Acife_1300 Acidithiobacillus ferrivorans SS3 UDP pyrophosphate synthase YP_004783781.1 1300443 D 743299 CDS YP_004783782.1 344199456 11044209 1301186..1301998 1 NC_015942.1 PFAM: Phosphatidate cytidylyltransferase; KEGG: afr:AFE_1449 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 1301998 11044209 Acife_1301 Acidithiobacillus ferrivorans SS3 phosphatidate cytidylyltransferase YP_004783782.1 1301186 D 743299 CDS YP_004783783.1 344199457 11042353 1301995..1303170 1 NC_015942.1 TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; HAMAP: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; KEGG: afr:AFE_1450 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1303170 11042353 Acife_1302 Acidithiobacillus ferrivorans SS3 1-deoxy-D-xylulose 5-phosphate reductoisomerase YP_004783783.1 1301995 D 743299 CDS YP_004783784.1 344199458 11042354 1303186..1304544 1 NC_015942.1 TIGRFAM: Peptidase M50, putative membrane-associated zinc metallopeptidase; PFAM: Peptidase M50; KEGG: afr:AFE_1451 membrane-associated zinc metalloprotease, putative; SMART: PDZ/DHR/GLGF; membrane-associated zinc metalloprotease 1304544 11042354 Acife_1303 Acidithiobacillus ferrivorans SS3 membrane-associated zinc metalloprotease YP_004783784.1 1303186 D 743299 CDS YP_004783785.1 344199459 11042355 1304541..1306886 1 NC_015942.1 KEGG: afr:AFE_1452 outer membrane protein, OMP85 family; TIGRFAM: Outer membrane assembly protein, YaeT; PFAM: Bacterial surface antigen (D15); Surface antigen variable number; outer membrane protein assembly complex, YaeT protein 1306886 11042355 Acife_1304 Acidithiobacillus ferrivorans SS3 outer membrane protein assembly complex, YaeT protein YP_004783785.1 1304541 D 743299 CDS YP_004783786.1 344199460 11042356 1306904..1307440 1 NC_015942.1 PFAM: Outer membrane chaperone Skp (OmpH); KEGG: afr:AFE_1453 outer membrane protein, OmpH family; outer membrane chaperone Skp 1307440 11042356 Acife_1305 Acidithiobacillus ferrivorans SS3 outer membrane chaperone Skp YP_004783786.1 1306904 D 743299 CDS YP_004783787.1 344199461 11042357 1307442..1308503 1 NC_015942.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; HAMAP: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; KEGG: afr:AFE_1454 UDP-3-O-3-hydroxymyristoyl glucosamine N-acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region; Bacterial transferase hexapeptide repeat; UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase 1308503 11042357 Acife_1306 Acidithiobacillus ferrivorans SS3 UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase YP_004783787.1 1307442 D 743299 CDS YP_004783788.1 344199462 11042358 1308496..1308942 1 NC_015942.1 TIGRFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; HAMAP: (3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; KEGG: afr:AFE_1455 beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; (3R)-hydroxymyristoyl-ACP dehydratase 1308942 11042358 Acife_1307 Acidithiobacillus ferrivorans SS3 (3R)-hydroxymyristoyl-ACP dehydratase YP_004783788.1 1308496 D 743299 CDS YP_004783789.1 344199463 11042359 1308939..1309721 1 NC_015942.1 TIGRFAM: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; HAMAP: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase; KEGG: afr:AFE_1456 acyl-(acyl-carrier-protein)-UDP-N-acetylglucosamine acyltransferase; PFAM: Bacterial transferase hexapeptide repeat; acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase 1309721 11042359 Acife_1308 Acidithiobacillus ferrivorans SS3 acyl-ACP--UDP-N- acetylglucosamine O-acyltransferase YP_004783789.1 1308939 D 743299 CDS YP_004783790.1 344199464 11044210 1309718..1310659 1 NC_015942.1 PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; KEGG: afr:AFE_1457 oxidoreductase, NAD-binding; oxidoreductase domain-containing protein 1310659 11044210 Acife_1309 Acidithiobacillus ferrivorans SS3 oxidoreductase domain-containing protein YP_004783790.1 1309718 D 743299 CDS YP_004783791.1 344199465 11044211 1310705..1311814 1 NC_015942.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: afr:AFE_1458 pleiotropic regulatory protein, putative; DegT/DnrJ/EryC1/StrS aminotransferase 1311814 11044211 Acife_1310 Acidithiobacillus ferrivorans SS3 DegT/DnrJ/EryC1/StrS aminotransferase YP_004783791.1 1310705 D 743299 CDS YP_004783792.1 344199466 11042360 1311819..1312946 1 NC_015942.1 KEGG: afr:AFE_1459 lipid A disaccharide synthase LpxB; TIGRFAM: Glycosyl transferase, family 19; PFAM: Glycosyl transferase, family 19; lipid-A-disaccharide synthase 1312946 11042360 Acife_1311 Acidithiobacillus ferrivorans SS3 lipid-A-disaccharide synthase YP_004783792.1 1311819 D 743299 CDS YP_004783793.1 344199467 11042361 1312960..1313553 1 NC_015942.1 PFAM: Ribonuclease HII/HIII; KEGG: afr:AFE_1460 ribonuclease HII; ribonuclease HII/HIII 1313553 11042361 Acife_1312 Acidithiobacillus ferrivorans SS3 ribonuclease HII/HIII YP_004783793.1 1312960 D 743299 CDS YP_004783794.1 344199468 11044212 1313550..1317050 1 NC_015942.1 TIGRFAM: DNA polymerase III, alpha subunit; PFAM: Bacterial DNA polymerase III, alpha subunit; PHP, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; KEGG: afr:AFE_1461 DNA polymerase III, alpha subunit; SMART: Polymerase/histidinol phosphatase, N-terminal; DNA polymerase III subunit alpha 1317050 11044212 Acife_1313 Acidithiobacillus ferrivorans SS3 DNA polymerase III subunit alpha YP_004783794.1 1313550 D 743299 CDS YP_004783795.1 344199469 11042362 1317085..1318035 1 NC_015942.1 TIGRFAM: Acetyl-CoA carboxylase, alpha subunit; HAMAP: Acetyl-CoA carboxylase, alpha subunit; KEGG: afr:AFE_1462 acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: Acetyl-CoA carboxylase, alpha subunit, conserved region; acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha 1318035 11042362 Acife_1314 Acidithiobacillus ferrivorans SS3 acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha YP_004783795.1 1317085 D 743299 CDS YP_004783796.1 344199470 11042363 1318013..1319407 1 NC_015942.1 TIGRFAM: Lysidine-tRNA(Ile) synthetase, N-terminal; Lysidine-tRNA(Ile) synthetase, C-terminal; HAMAP: tRNA(Ile)-lysidine synthase; KEGG: afr:AFE_1464 tRNA(Ile)-lysidine synthetase; PFAM: PP-loop; Lysidine-tRNA(Ile) synthetase, substrate-binding domain; tRNA(Ile)-lysidine synthase 1319407 11042363 Acife_1315 Acidithiobacillus ferrivorans SS3 tRNA(Ile)-lysidine synthase YP_004783796.1 1318013 D 743299 CDS YP_004783797.1 344199471 11042364 complement(1319371..1320702) 1 NC_015942.1 KEGG: afr:AFE_1463 dihydroorotase; TIGRFAM: Dihydroorotase multifunctional complex type; PFAM: Amidohydrolase 1; dihydroorotase, multifunctional complex type 1320702 11042364 Acife_1316 Acidithiobacillus ferrivorans SS3 dihydroorotase, multifunctional complex type YP_004783797.1 1319371 R 743299 CDS YP_004783798.1 344199472 11042365 complement(1320707..1321171) 1 NC_015942.1 TIGRFAM: RNA polymerase-binding, DksA; KEGG: afr:AFE_1465 DnaK suppressor protein; TraR/DksA family transcriptional regulator 1321171 11042365 Acife_1317 Acidithiobacillus ferrivorans SS3 TraR/DksA family transcriptional regulator YP_004783798.1 1320707 R 743299 CDS YP_004783799.1 344199473 11042366 1321341..1322105 1 NC_015942.1 KEGG: afr:AFE_1466 HAD-superfamily hydrolase, subfamily IA, variant 3; TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase-like hydrolase; HAD-superfamily hydrolase 1322105 11042366 Acife_1318 Acidithiobacillus ferrivorans SS3 HAD-superfamily hydrolase YP_004783799.1 1321341 D 743299 CDS YP_004783800.1 344199474 11042367 complement(1322227..1323468) 1 NC_015942.1 PFAM: Glycoside hydrolase, family 8; KEGG: aca:ACP_0076 endo-1,4-D-glucanase; glycoside hydrolase family protein 1323468 11042367 Acife_1319 Acidithiobacillus ferrivorans SS3 glycoside hydrolase family protein YP_004783800.1 1322227 R 743299 CDS YP_004783801.1 344199475 11042368 complement(1323498..1324163) 1 NC_015942.1 KEGG: pao:Pat9b_0116 cellulose synthase operon C domain-containing protein; hypothetical protein 1324163 11042368 Acife_1320 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783801.1 1323498 R 743299 CDS YP_004783802.1 344199476 11044213 complement(1324190..1326343) 1 NC_015942.1 KEGG: met:M446_0104 hypothetical protein; hypothetical protein 1326343 11044213 Acife_1321 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783802.1 1324190 R 743299 CDS YP_004783803.1 344199477 11042369 complement(1326340..1328427) 1 NC_015942.1 PFAM: Cellulose synthase BcsB, bacterial; KEGG: cse:Cseg_3479 cellulose synthase catalytic subunit; cellulose synthase BcsB 1328427 11042369 Acife_1322 Acidithiobacillus ferrivorans SS3 cellulose synthase BcsB YP_004783803.1 1326340 R 743299 CDS YP_004783804.1 344199478 11042370 complement(1328454..1330739) 1 NC_015942.1 KEGG: amc:MADE_00787 cellulose synthase catalytic subunit; TIGRFAM: Cellulose synthase catalytic subunit (UDP-forming); PFAM: Glycosyl transferase, family 2; Type IV pilus assembly PilZ; cellulose synthase catalytic subunit 1330739 11042370 Acife_1323 Acidithiobacillus ferrivorans SS3 cellulose synthase catalytic subunit YP_004783804.1 1328454 R 743299 CDS YP_004783805.1 344199479 11044214 complement(1330781..1331758) 1 NC_015942.1 KEGG: afr:AFE_0445 UTP-glucose-1-phosphate uridylyltransferase; TIGRFAM: UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal type; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase 1331758 11044214 Acife_1324 Acidithiobacillus ferrivorans SS3 UTP-glucose-1-phosphate uridylyltransferase YP_004783805.1 1330781 R 743299 CDS YP_004783806.1 344199480 11042371 1332494..1332841 1 NC_015942.1 KEGG: afr:AFE_1834 hypothetical protein; hypothetical protein 1332841 11042371 Acife_1325 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783806.1 1332494 D 743299 CDS YP_004783807.1 344199481 11042372 1333104..1333514 1 NC_015942.1 KEGG: har:HEAR0295 hypothetical protein; hypothetical protein 1333514 11042372 Acife_1326 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783807.1 1333104 D 743299 CDS YP_004783808.1 344199482 11042373 1333504..1335000 1 NC_015942.1 PFAM: Circadian clock protein KaiC, central region; KaiA binding; KEGG: har:HEAR0296 protein kinase; putative circadian clock protein, KaiC 1335000 11042373 Acife_1327 Acidithiobacillus ferrivorans SS3 putative circadian clock protein, KaiC YP_004783808.1 1333504 D 743299 CDS YP_004783809.1 344199483 11042374 1334987..1336696 1 NC_015942.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: geb:GM18_2096 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase 1336696 11042374 Acife_1328 Acidithiobacillus ferrivorans SS3 diguanylate cyclase/phosphodiesterase YP_004783809.1 1334987 D 743299 CDS YP_004783810.1 344199484 11044215 1336987..1337601 1 NC_015942.1 PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: Di-trans-poly-cis-decaprenylcistransferase; Di-trans-poly-cis-decaprenylcistransferase 1337601 11044215 Acife_1329 Acidithiobacillus ferrivorans SS3 Di-trans-poly-cis-decaprenylcistransferase YP_004783810.1 1336987 D 743299 CDS YP_004783811.1 344199485 11042375 complement(1337751..1339217) 1 NC_015942.1 KEGG: har:HEAR0296 protein kinase; putative circadian clock protein, KaiC 1339217 11042375 Acife_1330 Acidithiobacillus ferrivorans SS3 putative circadian clock protein, KaiC YP_004783811.1 1337751 R 743299 CDS YP_004783812.1 344199486 11042376 complement(1339220..1339615) 1 NC_015942.1 manually curated; KEGG: har:HEAR0295 hypothetical protein; hypothetical protein 1339615 11042376 Acife_1331 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783812.1 1339220 R 743299 CDS YP_004783813.1 344199487 11044216 complement(1339732..1340454) 1 NC_015942.1 KEGG: mep:MPQ_2599 transcriptional regulator, crp/fnr family; PFAM: HTH transcriptional regulator, Crp; SMART: HTH transcriptional regulator, Crp; putative Crp/Fnr family transcriptional regulator 1340454 11044216 Acife_1332 Acidithiobacillus ferrivorans SS3 putative Crp/Fnr family transcriptional regulator YP_004783813.1 1339732 R 743299 CDS YP_004783814.1 344199488 11042377 1341065..1345618 1 NC_015942.1 KEGG: smt:Smal_0854 outer membrane autotransporter barrel domain-containing protein; TIGRFAM: Outer membrane autotransporter barrel; Autotransporter-associated beta strand repeat; PFAM: Autotransporter beta-domain; outer membrane autotransporter barrel domain-containing protein 1345618 11042377 Acife_1333 Acidithiobacillus ferrivorans SS3 outer membrane autotransporter barrel domain-containing protein YP_004783814.1 1341065 D 743299 CDS YP_004783815.1 344199489 11042378 complement(1345699..1345998) 1 NC_015942.1 SMART: HTH transcriptional regulator, ArsR; KEGG: afr:AFE_2026 transcriptional regulator, ArsR family; regulatory protein ArsR 1345998 11042378 Acife_1334 Acidithiobacillus ferrivorans SS3 regulatory protein ArsR YP_004783815.1 1345699 R 743299 CDS YP_004783816.1 344199490 11044217 1346179..1346319 1 NC_015942.1 hypothetical protein 1346319 11044217 Acife_1335 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783816.1 1346179 D 743299 CDS YP_004783817.1 344199491 11042379 1346533..1347267 1 NC_015942.1 KEGG: pna:Pnap_1316 cyclic nucleotide-binding domain-containing protein; putative Crp/Fnr family transcriptional regulator 1347267 11042379 Acife_1336 Acidithiobacillus ferrivorans SS3 putative Crp/Fnr family transcriptional regulator YP_004783817.1 1346533 D 743299 CDS YP_004783818.1 344199492 11042380 complement(1347292..1349235) 1 NC_015942.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; KEGG: geb:GM18_2096 diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; Signal transduction response regulator, receiver region; response regulator receiver modulated diguanylate cyclase/phosphodiesterase 1349235 11042380 Acife_1337 Acidithiobacillus ferrivorans SS3 response regulator receiver modulated diguanylate cyclase/phosphodiesterase YP_004783818.1 1347292 R 743299 CDS YP_004783819.1 344199493 11044218 complement(1349238..1351334) 1 NC_015942.1 TIGRFAM: PAS; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; Signal transduction response regulator, receiver region; KEGG: sfr:Sfri_1019 PAS/PAC sensor hybrid histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAC motif; PAS; Signal transduction response regulator, receiver region; PAS/PAC sensor hybrid histidine kinase 1351334 11044218 Acife_1338 Acidithiobacillus ferrivorans SS3 PAS/PAC sensor hybrid histidine kinase YP_004783819.1 1349238 R 743299 CDS YP_004783820.1 344199494 11042382 1351672..1352313 1 NC_015942.1 PFAM: Methyltransferase type 11; KEGG: afr:AFE_0759 methyltransferase, putative; type 11 methyltransferase 1352313 11042382 Acife_1340 Acidithiobacillus ferrivorans SS3 type 11 methyltransferase YP_004783820.1 1351672 D 743299 CDS YP_004783821.1 344199495 11042383 1352532..1353509 1 NC_015942.1 KEGG: afr:AFE_2420 cation diffusion facilitator family transporter; TIGRFAM: Cation efflux protein; PFAM: Cation efflux protein; cation diffusion facilitator family transporter 1353509 11042383 Acife_1342 Acidithiobacillus ferrivorans SS3 cation diffusion facilitator family transporter YP_004783821.1 1352532 D 743299 CDS YP_004783822.1 344199496 11042384 1353686..1354426 1 NC_015942.1 KEGG: tkm:TK90_0757 beta-lactamase domain protein; beta-lactamase domain-containing protein 1354426 11042384 Acife_1343 Acidithiobacillus ferrivorans SS3 beta-lactamase domain-containing protein YP_004783822.1 1353686 D 743299 CDS YP_004783823.1 344199497 11044220 1354423..1354779 1 NC_015942.1 KEGG: afe:Lferr_2267 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; regulatory protein ArsR 1354779 11044220 Acife_1344 Acidithiobacillus ferrivorans SS3 regulatory protein ArsR YP_004783823.1 1354423 D 743299 CDS YP_004783824.1 344199498 11042385 1354776..1356047 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_2642 hypothetical protein; major facilitator superfamily protein 1356047 11042385 Acife_1345 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004783824.1 1354776 D 743299 CDS YP_004783825.1 344199499 11044221 complement(1356337..1356600) 1 NC_015942.1 manually curated; KEGG: afr:AFE_2811 lipoprotein, putative; lipoprotein 1356600 11044221 Acife_1347 Acidithiobacillus ferrivorans SS3 lipoprotein YP_004783825.1 1356337 R 743299 CDS YP_004783826.1 344199500 11042387 complement(1356654..1357322) 1 NC_015942.1 KEGG: afr:AFE_2114 hypothetical protein; TIGRFAM: Hopanoid biosynthesis-associated membrane protein HpnM; PFAM: Toluene tolerance; hopanoid biosynthesis associated membrane protein HpnM 1357322 11042387 Acife_1348 Acidithiobacillus ferrivorans SS3 hopanoid biosynthesis associated membrane protein HpnM YP_004783826.1 1356654 R 743299 CDS YP_004783827.1 344199501 11042388 complement(1357359..1357520) 1 NC_015942.1 KEGG: hch:HCH_04387 hypothetical protein; HAMAP: Protein of unknown function DUF1328; PFAM: Protein of unknown function DUF1328; hypothetical protein 1357520 11042388 Acife_1349 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783827.1 1357359 R 743299 CDS YP_004783828.1 344199502 11044222 complement(1357587..1357757) 1 NC_015942.1 PFAM: CsbD-like; KEGG: mms:mma_1042 hypothetical protein; CsbD family protein 1357757 11044222 Acife_1350 Acidithiobacillus ferrivorans SS3 CsbD family protein YP_004783828.1 1357587 R 743299 CDS YP_004783829.1 344199503 11042390 complement(1358068..1358298) 1 NC_015942.1 hypothetical protein 1358298 11042390 Acife_1352 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783829.1 1358068 R 743299 CDS YP_004783830.1 344199504 11044223 complement(1358343..1358603) 1 NC_015942.1 hypothetical protein 1358603 11044223 Acife_1353 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783830.1 1358343 R 743299 CDS YP_004783831.1 344199505 11042391 1359284..1359535 1 NC_015942.1 KEGG: nit:NAL212_1800 transposase mutator type; hypothetical protein 1359535 11042391 Acife_1354 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783831.1 1359284 D 743299 CDS YP_004783832.1 344199506 11042393 1359791..1361818 1 NC_015942.1 SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; TIGRFAM: Excinuclease ABC, B subunit; KEGG: afr:AFE_0845 excinuclease ABC, B subunit; HAMAP: Excinuclease ABC, B subunit; PFAM: DNA/RNA helicase, C-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; UvrB/UvrC protein; UvrABC system protein B 1361818 11042393 Acife_1355 Acidithiobacillus ferrivorans SS3 UvrABC system protein B YP_004783832.1 1359791 D 743299 CDS YP_004783833.1 344199507 11042394 1361926..1362975 1 NC_015942.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; KEGG: afr:AFE_0846 alcohol dehydrogenase, zinc-containing; Alcohol dehydrogenase GroES domain-containing protein 1362975 11042394 Acife_1356 Acidithiobacillus ferrivorans SS3 Alcohol dehydrogenase GroES domain-containing protein YP_004783833.1 1361926 D 743299 CDS YP_004783834.1 344199508 11044224 1363194..1364834 1 NC_015942.1 TIGRFAM: CTP synthase; HAMAP: CTP synthase; KEGG: afr:AFE_0847 CTP synthetase; PFAM: CTP synthase, N-terminal; Glutamine amidotransferase class-I, C-terminal; CTP synthase 1364834 11044224 Acife_1357 Acidithiobacillus ferrivorans SS3 CTP synthase YP_004783834.1 1363194 D 743299 CDS YP_004783835.1 344199509 11042395 1364831..1365676 1 NC_015942.1 TIGRFAM: 3-deoxy-8-phosphooctulonate synthase; HAMAP: 3-deoxy-8-phosphooctulonate synthase; KEGG: afr:AFE_0848 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; 2-dehydro-3-deoxyphosphooctonate aldolase 1365676 11042395 Acife_1358 Acidithiobacillus ferrivorans SS3 2-dehydro-3-deoxyphosphooctonate aldolase YP_004783835.1 1364831 D 743299 CDS YP_004783836.1 344199510 11042396 1365673..1366953 1 NC_015942.1 TIGRFAM: Enolase; HAMAP: Enolase; KEGG: afr:AFE_0849 phosphopyruvate hydratase; PFAM: Enolase, C-terminal; Enolase, N-terminal; enolase 1366953 11042396 Acife_1359 Acidithiobacillus ferrivorans SS3 enolase YP_004783836.1 1365673 D 743299 CDS YP_004783837.1 344199511 11044225 1367008..1367373 1 NC_015942.1 PFAM: Septum formation initiator; KEGG: afr:AFE_0850 septum formation initiator family protein; septum formation initiator 1367373 11044225 Acife_1360 Acidithiobacillus ferrivorans SS3 septum formation initiator YP_004783837.1 1367008 D 743299 CDS YP_004783838.1 344199512 11042397 complement(1367423..1367983) 1 NC_015942.1 TIGRFAM: Translation elongation factor P; HAMAP: Translation elongation factor P; KEGG: afr:AFE_0851 translation elongation factor P; PFAM: Elongation factor P, C-terminal; Translation elongation factor P/YeiP, central; Translation elongation factor, KOW-like; elongation factor P 1367983 11042397 Acife_1361 Acidithiobacillus ferrivorans SS3 elongation factor P YP_004783838.1 1367423 R 743299 CDS YP_004783839.1 344199513 11042398 1368073..1368375 1 NC_015942.1 PFAM: Protein of unknown function DUF971; KEGG: afr:AFE_0852 hypothetical protein; hypothetical protein 1368375 11042398 Acife_1362 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783839.1 1368073 D 743299 CDS YP_004783840.1 344199514 11044226 1368408..1370279 1 NC_015942.1 SMART: Excinuclease ABC, C subunit, N-terminal; TIGRFAM: Excinuclease ABC, C subunit; KEGG: afe:Lferr_0979 excinuclease ABC subunit C; HAMAP: UvrABC system protein C; PFAM: Excinuclease ABC, C subunit, C-terminal; Excinuclease ABC, C subunit, N-terminal; UvrB/UvrC protein; UvrABC system protein C 1370279 11044226 Acife_1363 Acidithiobacillus ferrivorans SS3 UvrABC system protein C YP_004783840.1 1368408 D 743299 CDS YP_004783841.1 344199515 11042399 1370282..1370869 1 NC_015942.1 KEGG: afr:AFE_0854 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1370869 11042399 Acife_1364 Acidithiobacillus ferrivorans SS3 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase YP_004783841.1 1370282 D 743299 CDS YP_004783842.1 344199516 11042402 1371168..1371323 1 NC_015942.1 hypothetical protein 1371323 11042402 Acife_1365 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783842.1 1371168 D 743299 CDS YP_004783843.1 344199517 11042403 1371311..1372288 1 NC_015942.1 PFAM: tRNA-dihydrouridine synthase; KEGG: afr:AFE_2027 tRNA-dihydrouridine synthase A; dihydrouridine synthase DuS 1372288 11042403 Acife_1366 Acidithiobacillus ferrivorans SS3 dihydrouridine synthase DuS YP_004783843.1 1371311 D 743299 CDS YP_004783844.1 344199518 11042404 complement(1372292..1372585) 1 NC_015942.1 KEGG: afr:AFE_2026 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; regulatory protein ArsR 1372585 11042404 Acife_1367 Acidithiobacillus ferrivorans SS3 regulatory protein ArsR YP_004783844.1 1372292 R 743299 CDS YP_004783845.1 344199519 11042405 complement(1372855..1374318) 1 NC_015942.1 KEGG: afr:AFE_2025 glucose-6-phosphate 1-dehydrogenase; TIGRFAM: Glucose-6-phosphate dehydrogenase; PFAM: Glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 1374318 11042405 Acife_1368 Acidithiobacillus ferrivorans SS3 glucose-6-phosphate 1-dehydrogenase YP_004783845.1 1372855 R 743299 CDS YP_004783846.1 344199520 11044227 complement(1374319..1375239) 1 NC_015942.1 KEGG: afr:AFE_2024 6-phosphogluconate dehydrogenase-like protein; TIGRFAM: 6-phosphogluconate dehydrogenase related protein; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, C-terminal; 6-phosphogluconate dehydrogenase 1375239 11044227 Acife_1369 Acidithiobacillus ferrivorans SS3 6-phosphogluconate dehydrogenase YP_004783846.1 1374319 R 743299 CDS YP_004783847.1 344199521 11042406 1375367..1376548 1 NC_015942.1 TIGRFAM: Phosphoribosylglycinamide formyltransferase 2; HAMAP: Phosphoribosylglycinamide formyltransferase 2; KEGG: afr:AFE_2023 phosphoribosylglycinamide formyltransferase 2; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; phosphoribosylglycinamide formyltransferase 2 1376548 11042406 Acife_1370 Acidithiobacillus ferrivorans SS3 phosphoribosylglycinamide formyltransferase 2 YP_004783847.1 1375367 D 743299 CDS YP_004783848.1 344199522 11042407 complement(1376594..1377832) 1 NC_015942.1 PFAM: Aminotransferase, class I/II; KEGG: afr:AFE_2022 aspartate aminotransferase; class I and II aminotransferase 1377832 11042407 Acife_1371 Acidithiobacillus ferrivorans SS3 class I and II aminotransferase YP_004783848.1 1376594 R 743299 CDS YP_004783849.1 344199523 11044228 1378181..1380022 1 NC_015942.1 KEGG: pla:Plav_2096 lipid ABC transporter ATPase/inner membrane protein; PFAM: ABC transporter-like; ABC transporter, transmembrane region; SMART: ATPase, AAA+ type, core; ABC transporter 1380022 11044228 Acife_1372 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004783849.1 1378181 D 743299 CDS YP_004783850.1 344199524 11042408 1380147..1380527 1 NC_015942.1 KEGG: afe:Lferr_1685 hypothetical protein; hypothetical protein 1380527 11042408 Acife_1373 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783850.1 1380147 D 743299 CDS YP_004783851.1 344199525 11042409 1380543..1381520 1 NC_015942.1 PFAM: Uncharacterised protein family UPF0145; KEGG: afr:AFE_2019 hypothetical protein; hypothetical protein 1381520 11042409 Acife_1374 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783851.1 1380543 D 743299 CDS YP_004783852.1 344199526 11042410 1381517..1382341 1 NC_015942.1 PFAM: Uncharacterised protein family UPF0145; KEGG: afr:AFE_2018 hypothetical protein; hypothetical protein 1382341 11042410 Acife_1375 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783852.1 1381517 D 743299 CDS YP_004783853.1 344199527 11042411 1382381..1383115 1 NC_015942.1 PFAM: PspA/IM30; KEGG: afr:AFE_2017 PspA/IM30 family; phage shock protein PspA 1383115 11042411 Acife_1376 Acidithiobacillus ferrivorans SS3 phage shock protein PspA YP_004783853.1 1382381 D 743299 CDS YP_004783854.1 344199528 11042413 1383378..1383950 1 NC_015942.1 PFAM: Protein of unknown function DUF1643; KEGG: mae:Maeo_0922 hypothetical protein; hypothetical protein 1383950 11042413 Acife_1377 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783854.1 1383378 D 743299 CDS YP_004783855.1 344199529 11042414 complement(1383963..1384775) 1 NC_015942.1 PFAM: Protein of unknown function DUF202; KEGG: afr:AFE_1554 hypothetical protein; hypothetical protein 1384775 11042414 Acife_1378 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783855.1 1383963 R 743299 CDS YP_004783856.1 344199530 11042416 1385525..1386868 1 NC_015942.1 KEGG: afe:Lferr_0031 hypothetical protein; hypothetical protein 1386868 11042416 Acife_1379 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783856.1 1385525 D 743299 CDS YP_004783857.1 344199531 11042417 1386919..1387416 1 NC_015942.1 KEGG: amv:ACMV_33690 hypothetical protein; hypothetical protein 1387416 11042417 Acife_1380 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783857.1 1386919 D 743299 CDS YP_004783858.1 344199532 11042418 1387503..1388021 1 NC_015942.1 KEGG: tdn:Suden_1309 hypothetical protein; hypothetical protein 1388021 11042418 Acife_1381 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783858.1 1387503 D 743299 CDS YP_004783859.1 344199533 11042420 1388329..1389342 1 NC_015942.1 KEGG: afr:AFE_0043 periplasmic solute-binding protein, putative; periplasmic solute-binding protein 1389342 11042420 Acife_1383 Acidithiobacillus ferrivorans SS3 periplasmic solute-binding protein YP_004783859.1 1388329 D 743299 CDS YP_004783860.1 344199534 11042421 1389353..1390441 1 NC_015942.1 PFAM: TQO small subunit DoxD; KEGG: afe:Lferr_0045 TQO small subunit DoxD; TQO small subunit DoxD domain-containing protein 1390441 11042421 Acife_1384 Acidithiobacillus ferrivorans SS3 TQO small subunit DoxD domain-containing protein YP_004783860.1 1389353 D 743299 CDS YP_004783861.1 344199535 11042422 complement(1390677..1391900) 1 NC_015942.1 PFAM: Protein of unknown function methylase putative; KEGG: afe:Lferr_1014 methyltransferase small; hypothetical protein 1391900 11042422 Acife_1385 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783861.1 1390677 R 743299 CDS YP_004783862.1 344199536 11042423 1392062..1393114 1 NC_015942.1 TIGRFAM: Putative translation initiation factor, aIF-2BI/5-methylthioribose-1-phosphate isomerase; Initiation factor 2B alpha/beta/delta; HAMAP: Methylthioribose-1-phosphate isomerase; KEGG: afr:AFE_0893 translation initiation factor, putative, aIF-2BI family; PFAM: Initiation factor 2B related; methylthioribose-1-phosphate isomerase 1393114 11042423 Acife_1386 Acidithiobacillus ferrivorans SS3 methylthioribose-1-phosphate isomerase YP_004783862.1 1392062 D 743299 CDS YP_004783863.1 344199537 11044230 1393171..1395708 1 NC_015942.1 TIGRFAM: DNA gyrase, subunit A; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; KEGG: afr:AFE_0894 DNA gyrase, A subunit; SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase subunit A 1395708 11044230 Acife_1387 Acidithiobacillus ferrivorans SS3 DNA gyrase subunit A YP_004783863.1 1393171 D 743299 CDS YP_004783864.1 344199538 11042424 1395715..1396803 1 NC_015942.1 TIGRFAM: Phosphoserine aminotransferase; HAMAP: Phosphoserine aminotransferase; KEGG: afr:AFE_0895 phosphoserine aminotransferase; PFAM: Aminotransferase, class V/Cysteine desulfurase; phosphoserine aminotransferase 1396803 11042424 Acife_1388 Acidithiobacillus ferrivorans SS3 phosphoserine aminotransferase YP_004783864.1 1395715 D 743299 CDS YP_004783865.1 344199539 11042425 1396819..1397895 1 NC_015942.1 KEGG: afr:AFE_0897 chorismate mutase/prephenate dehydratase; TIGRFAM: Gamma/beta/epsilon proteobacterial P-protein, chorismate mutase domain; PFAM: Prephenate dehydratase; Chorismate mutase, type II; Amino acid-binding ACT; chorismate mutase 1397895 11042425 Acife_1389 Acidithiobacillus ferrivorans SS3 chorismate mutase YP_004783865.1 1396819 D 743299 CDS YP_004783866.1 344199540 11042426 1397895..1398992 1 NC_015942.1 TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: afr:AFE_0898 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II; histidinol-phosphate aminotransferase 1398992 11042426 Acife_1390 Acidithiobacillus ferrivorans SS3 histidinol-phosphate aminotransferase YP_004783866.1 1397895 D 743299 CDS YP_004783867.1 344199541 11042427 1398997..1400013 1 NC_015942.1 KEGG: afr:AFE_0899 phospho-2-dehydro-3-deoxyheptonate aldolase; TIGRFAM: Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2; PFAM: DAHP synthetase I/KDSA; phospho-2-dehydro-3-deoxyheptonate aldolase 1400013 11042427 Acife_1391 Acidithiobacillus ferrivorans SS3 phospho-2-dehydro-3-deoxyheptonate aldolase YP_004783867.1 1398997 D 743299 CDS YP_004783868.1 344199542 11044231 1400015..1400890 1 NC_015942.1 PFAM: Prephenate dehydrogenase; KEGG: afr:AFE_0900 prephenate dehydrogenase; prephenate dehydrogenase 1400890 11044231 Acife_1392 Acidithiobacillus ferrivorans SS3 prephenate dehydrogenase YP_004783868.1 1400015 D 743299 CDS YP_004783869.1 344199543 11042428 1400894..1402195 1 NC_015942.1 TIGRFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; HAMAP: 3-phosphoshikimate 1-carboxyvinyltransferase, subgroup; KEGG: afr:AFE_0901 3-phosphoshikimate 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; 3-phosphoshikimate 1-carboxyvinyltransferase 1402195 11042428 Acife_1393 Acidithiobacillus ferrivorans SS3 3-phosphoshikimate 1-carboxyvinyltransferase YP_004783869.1 1400894 D 743299 CDS YP_004783870.1 344199544 11042429 1402192..1402872 1 NC_015942.1 TIGRFAM: Cytidylate kinase; HAMAP: Cytidylate kinase; KEGG: afr:AFE_0902 cytidylate kinase; PFAM: Cytidylate kinase region; cytidylate kinase 1402872 11042429 Acife_1394 Acidithiobacillus ferrivorans SS3 cytidylate kinase YP_004783870.1 1402192 D 743299 CDS YP_004783871.1 344199545 11042430 1402951..1404657 1 NC_015942.1 KEGG: afr:AFE_0903 ribosomal protein S1; TIGRFAM: Ribosomal S1 synthesis/modification protein; PFAM: Ribosomal protein S1, RNA binding domain; 30S ribosomal protein S1 1404657 11042430 Acife_1395 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S1 YP_004783871.1 1402951 D 743299 CDS YP_004783872.1 344199546 11044232 1404821..1405126 1 NC_015942.1 TIGRFAM: Integration host factor, beta subunit; PFAM: Histone-like bacterial DNA-binding protein; KEGG: afr:AFE_0905 integration host factor, beta subunit; SMART: Histone-like bacterial DNA-binding protein; integration host factor subunit beta 1405126 11044232 Acife_1396 Acidithiobacillus ferrivorans SS3 integration host factor subunit beta YP_004783872.1 1404821 D 743299 CDS YP_004783873.1 344199547 11042431 1405127..1406296 1 NC_015942.1 KEGG: afe:Lferr_1027 hypothetical protein; hypothetical protein 1406296 11042431 Acife_1397 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783873.1 1405127 D 743299 CDS YP_004783874.1 344199548 11042432 1406293..1407009 1 NC_015942.1 KEGG: afr:AFE_0907 orotidine 5`-phosphate decarboxylase; TIGRFAM: Orotidine 5'-phosphate decarboxylase, subfamily 1, core; PFAM: Orotidine 5'-phosphate decarboxylase, core; orotidine 5'-phosphate decarboxylase 1407009 11042432 Acife_1398 Acidithiobacillus ferrivorans SS3 orotidine 5'-phosphate decarboxylase YP_004783874.1 1406293 D 743299 CDS YP_004783875.1 344199549 11042433 1407075..1407662 1 NC_015942.1 TIGRFAM: Orotate phosphoribosyltransferase, Thermus type; HAMAP: Orotate phosphoribosyltransferase; KEGG: afe:Lferr_1029 orotate phosphoribosyltransferase; PFAM: Phosphoribosyltransferase; orotate phosphoribosyltransferase 1407662 11042433 Acife_1399 Acidithiobacillus ferrivorans SS3 orotate phosphoribosyltransferase YP_004783875.1 1407075 D 743299 CDS YP_004783876.1 344199550 11042434 1407736..1409022 1 NC_015942.1 TIGRFAM: Trigger factor; HAMAP: Trigger factor; KEGG: afr:AFE_0909 trigger factor; PFAM: Trigger factor, ribosome-binding, bacterial; Peptidyl-prolyl cis-trans isomerase, FKBP-type; Trigger factor, C-terminal, bacterial; Trigger factor 1409022 11042434 Acife_1400 Acidithiobacillus ferrivorans SS3 Trigger factor YP_004783876.1 1407736 D 743299 CDS YP_004783877.1 344199551 11042435 1409068..1409712 1 NC_015942.1 TIGRFAM: Peptidase S14, ClpP; HAMAP: ATP-dependent Clp protease proteolytic subunit; KEGG: afr:AFE_0910 ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: Peptidase S14, ClpP; ATP-dependent Clp protease proteolytic subunit 1409712 11042435 Acife_1401 Acidithiobacillus ferrivorans SS3 ATP-dependent Clp protease proteolytic subunit YP_004783877.1 1409068 D 743299 CDS YP_004783878.1 344199552 11044233 1409731..1411002 1 NC_015942.1 SMART: ATPase, AAA+ type, core; TIGRFAM: Clp protease, ATP-binding subunit ClpX; KEGG: afr:AFE_0911 ATP-dependent Clp protease, ATP-binding subunit ClpX; HAMAP: Clp protease, ATP-binding subunit ClpX; PFAM: ATPase associated with various cellular activities, AAA-2; Zinc finger, C4-type; Clp ATPase, C-terminal; ATP-dependent Clp protease ATP-binding subunit clpX 1411002 11044233 Acife_1402 Acidithiobacillus ferrivorans SS3 ATP-dependent Clp protease ATP-binding subunit clpX YP_004783878.1 1409731 D 743299 CDS YP_004783879.1 344199553 11042436 1411090..1413522 1 NC_015942.1 TIGRFAM: Peptidase S16, ATP-dependent protease La; PFAM: Peptidase S16, lon C-terminal; Peptidase S16, lon N-terminal; ATPase, AAA-type, core; KEGG: afe:Lferr_1033 ATP-dependent protease La; SMART: Peptidase S16, lon N-terminal; ATPase, AAA+ type, core; anti-sigma H sporulation factor LonB 1413522 11042436 Acife_1403 Acidithiobacillus ferrivorans SS3 anti-sigma H sporulation factor LonB YP_004783879.1 1411090 D 743299 CDS YP_004783880.1 344199554 11042437 1413766..1414038 1 NC_015942.1 KEGG: afr:AFE_0914 DNA-binding protein HU; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 1414038 11042437 Acife_1404 Acidithiobacillus ferrivorans SS3 histone family protein DNA-binding protein YP_004783880.1 1413766 D 743299 CDS YP_004783881.1 344199555 11044235 1414378..1415946 1 NC_015942.1 KEGG: afe:Lferr_1036 hypothetical protein; hypothetical protein 1415946 11044235 Acife_1405 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783881.1 1414378 D 743299 CDS YP_004783882.1 344199556 11042439 complement(1416004..1416447) 1 NC_015942.1 PFAM: Protein of unknown function DUF2147; KEGG: afr:AFE_1867 hypothetical protein; hypothetical protein 1416447 11042439 Acife_1406 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783882.1 1416004 R 743299 CDS YP_004783883.1 344199557 11042440 1416785..1417405 1 NC_015942.1 TIGRFAM: Peptidase S24, LexA repressor; HAMAP: LexA repressor; KEGG: afr:AFE_1868 LexA repressor; PFAM: LexA DNA-binding region; Peptidase S24/S26A/S26B, conserved region; SOS-response transcriptional repressor, LexA 1417405 11042440 Acife_1407 Acidithiobacillus ferrivorans SS3 SOS-response transcriptional repressor, LexA YP_004783883.1 1416785 D 743299 CDS YP_004783884.1 344199558 11042441 1417603..1418454 1 NC_015942.1 KEGG: afe:Lferr_1547 hypothetical protein; hypothetical protein 1418454 11042441 Acife_1408 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783884.1 1417603 D 743299 CDS YP_004783885.1 344199559 11044236 1418451..1421078 1 NC_015942.1 KEGG: afr:AFE_1873 aminopeptidase N; TIGRFAM: Peptidase M1, alanyl aminopeptidase; PFAM: Peptidase M1, membrane alanine aminopeptidase, N-terminal; aminopeptidase N 1421078 11044236 Acife_1409 Acidithiobacillus ferrivorans SS3 aminopeptidase N YP_004783885.1 1418451 D 743299 CDS YP_004783886.1 344199560 11042442 1421110..1421451 1 NC_015942.1 hypothetical protein 1421451 11042442 Acife_1410 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783886.1 1421110 D 743299 CDS YP_004783887.1 344199561 11042443 complement(1421464..1422933) 1 NC_015942.1 PFAM: Adenylate cyclase; CHAD; KEGG: afr:AFE_1874 adenylate cyclase; adenylate cyclase 1422933 11042443 Acife_1411 Acidithiobacillus ferrivorans SS3 adenylate cyclase YP_004783887.1 1421464 R 743299 CDS YP_004783888.1 344199562 11042444 complement(1422917..1423555) 1 NC_015942.1 KEGG: afr:AFE_1875 ParA-like protein; ParA-like protein 1423555 11042444 Acife_1412 Acidithiobacillus ferrivorans SS3 ParA-like protein YP_004783888.1 1422917 R 743299 CDS YP_004783889.1 344199563 11042445 complement(1423568..1425673) 1 NC_015942.1 TIGRFAM: polyphosphate kinase 1; HAMAP: Polyphosphate kinase; KEGG: afr:AFE_1876 polyphosphate kinase; PFAM: Polyphosphate kinase; polyphosphate kinase 1425673 11042445 Acife_1413 Acidithiobacillus ferrivorans SS3 polyphosphate kinase YP_004783889.1 1423568 R 743299 CDS YP_004783890.1 344199564 11044237 complement(1425670..1426533) 1 NC_015942.1 KEGG: afr:AFE_1877 methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase; HAMAP: Tetrahydrofolate dehydrogenase/cyclohydrolase; PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; bifunctional protein folD 1426533 11044237 Acife_1414 Acidithiobacillus ferrivorans SS3 bifunctional protein folD YP_004783890.1 1425670 R 743299 CDS YP_004783891.1 344199565 11042446 complement(1426736..1429816) 1 NC_015942.1 PFAM: Acriflavin resistance protein; KEGG: afr:AFE_1878 transporter, AcrB/AcrD/AcrF family; acriflavin resistance protein 1429816 11042446 Acife_1415 Acidithiobacillus ferrivorans SS3 acriflavin resistance protein YP_004783891.1 1426736 R 743299 CDS YP_004783892.1 344199566 11042447 complement(1429827..1430918) 1 NC_015942.1 KEGG: afr:AFE_1879 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 1430918 11042447 Acife_1416 Acidithiobacillus ferrivorans SS3 RND family efflux transporter MFP subunit YP_004783892.1 1429827 R 743299 CDS YP_004783893.1 344199567 11042448 complement(1430962..1432506) 1 NC_015942.1 KEGG: afr:AFE_1880 RND efflux system, outer membrane lipoprotein, NodT family; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 1432506 11042448 Acife_1417 Acidithiobacillus ferrivorans SS3 NodT family RND efflux system outer membrane lipoprotein YP_004783893.1 1430962 R 743299 CDS YP_004783894.1 344199568 11044238 1432727..1433512 1 NC_015942.1 PFAM: Tetratricopeptide TPR2; KEGG: afr:AFE_1881 hypothetical protein; hypothetical protein 1433512 11044238 Acife_1418 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783894.1 1432727 D 743299 CDS YP_004783895.1 344199569 11042449 complement(1433579..1434157) 1 NC_015942.1 TIGRFAM: Maf-like protein; HAMAP: Maf-like protein; KEGG: afr:AFE_1882 maf protein; PFAM: Maf-like protein; septum formation protein Maf 1434157 11042449 Acife_1419 Acidithiobacillus ferrivorans SS3 septum formation protein Maf YP_004783895.1 1433579 R 743299 CDS YP_004783896.1 344199570 11044239 complement(1434170..1436959) 1 NC_015942.1 KEGG: afr:AFE_1883 phosphoenolpyruvate carboxylase; HAMAP: Phosphoenolpyruvate carboxylase; PFAM: Phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase 1436959 11044239 Acife_1420 Acidithiobacillus ferrivorans SS3 phosphoenolpyruvate carboxylase YP_004783896.1 1434170 R 743299 CDS YP_004783897.1 344199571 11042450 1437335..1437601 1 NC_015942.1 TIGRFAM: Host factor Hfq; HAMAP: Protein hfq; KEGG: afr:AFE_1884 RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; protein hfq 1437601 11042450 Acife_1421 Acidithiobacillus ferrivorans SS3 protein hfq YP_004783897.1 1437335 D 743299 CDS YP_004783898.1 344199572 11042451 1437601..1438923 1 NC_015942.1 manually curated; TIGRFAM: GTP-binding protein, HflX; KEGG: afr:AFE_1885 GTP-binding protein HflX; PFAM: GTP-binding protein, HSR1-related; GTP-binding proten HflX 1438923 11042451 Acife_1422 Acidithiobacillus ferrivorans SS3 GTP-binding proten HflX YP_004783898.1 1437601 D 743299 CDS YP_004783899.1 344199573 11044240 1438938..1440134 1 NC_015942.1 TIGRFAM: HflK; PFAM: Band 7 protein; KEGG: afr:AFE_1886 HflK protein; SMART: Band 7 protein; HflK protein 1440134 11044240 Acife_1423 Acidithiobacillus ferrivorans SS3 HflK protein YP_004783899.1 1438938 D 743299 CDS YP_004783900.1 344199574 11042452 1440131..1441003 1 NC_015942.1 TIGRFAM: HflC; PFAM: Band 7 protein; KEGG: afr:AFE_1887 HflC protein; SMART: Band 7 protein; HflC protein 1441003 11042452 Acife_1424 Acidithiobacillus ferrivorans SS3 HflC protein YP_004783900.1 1440131 D 743299 CDS YP_004783901.1 344199575 11044241 1441000..1442202 1 NC_015942.1 KEGG: afr:AFE_1888 ATP phosphoribosyltransferase regulatory subunit; HAMAP: ATP phosphoribosyltransferase regulatory subunit; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; ATP phosphoribosyltransferase regulatory subunit 1442202 11044241 Acife_1425 Acidithiobacillus ferrivorans SS3 ATP phosphoribosyltransferase regulatory subunit YP_004783901.1 1441000 D 743299 CDS YP_004783902.1 344199576 11042453 1442246..1443535 1 NC_015942.1 SMART: Adenylosuccinate synthetase; TIGRFAM: Adenylosuccinate synthetase; KEGG: afr:AFE_1889 adenylosuccinate synthetase; HAMAP: Adenylosuccinate synthetase; PFAM: Adenylosuccinate synthetase; adenylosuccinate synthetase 1443535 11042453 Acife_1426 Acidithiobacillus ferrivorans SS3 adenylosuccinate synthetase YP_004783902.1 1442246 D 743299 CDS YP_004783903.1 344199577 11042454 1443639..1443911 1 NC_015942.1 KEGG: afr:AFE_2732 iron oxidase; iron oxidase 1443911 11042454 Acife_1427 Acidithiobacillus ferrivorans SS3 iron oxidase YP_004783903.1 1443639 D 743299 CDS YP_004783904.1 344199578 11042456 1444361..1446601 1 NC_015942.1 TIGRFAM: Ribonuclease R, bacterial; Ribonuclease II/ribonuclease R, bacteria; PFAM: Ribonuclease II/R; Ribonuclease B, OB region N-terminal; Ribonuclease R winged-helix domain; Ribosomal protein S1, RNA binding domain; KEGG: afr:AFE_1891 ribonuclease R; SMART: Cold shock protein; ribonuclease R 1446601 11042456 Acife_1428 Acidithiobacillus ferrivorans SS3 ribonuclease R YP_004783904.1 1444361 D 743299 CDS YP_004783905.1 344199579 11044242 complement(1446656..1447441) 1 NC_015942.1 KEGG: afr:AFE_1892 hypothetical protein; TIGRFAM: polyphosphate kinase 2; PFAM: Polyphosphate kinase 2; polyphosphate kinase 2 1447441 11044242 Acife_1429 Acidithiobacillus ferrivorans SS3 polyphosphate kinase 2 YP_004783905.1 1446656 R 743299 CDS YP_004783906.1 344199580 11042457 complement(1447474..1448862) 1 NC_015942.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: afr:AFE_1893 dihydrolipoamide dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1448862 11042457 Acife_1430 Acidithiobacillus ferrivorans SS3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004783906.1 1447474 R 743299 CDS YP_004783907.1 344199581 11042458 complement(1448965..1449702) 1 NC_015942.1 PFAM: Molybdopterin binding; KEGG: afr:AFE_1894 hypothetical protein; molybdopterin binding domain-containing protein 1449702 11042458 Acife_1431 Acidithiobacillus ferrivorans SS3 molybdopterin binding domain-containing protein YP_004783907.1 1448965 R 743299 CDS YP_004783908.1 344199582 11042459 complement(1449699..1450364) 1 NC_015942.1 KEGG: afr:AFE_1896 phosphoribosylglycinamide formyltransferase; TIGRFAM: Phosphoribosylglycinamide formyltransferase; PFAM: Formyl transferase, N-terminal; phosphoribosylglycinamide formyltransferase 1450364 11042459 Acife_1432 Acidithiobacillus ferrivorans SS3 phosphoribosylglycinamide formyltransferase YP_004783908.1 1449699 R 743299 CDS YP_004783909.1 344199583 11042460 complement(1450357..1451394) 1 NC_015942.1 KEGG: afe:Lferr_1573 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: Phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; phosphoribosylformylglycinamidine cyclo-ligase 1451394 11042460 Acife_1433 Acidithiobacillus ferrivorans SS3 phosphoribosylformylglycinamidine cyclo-ligase YP_004783909.1 1450357 R 743299 CDS YP_004783910.1 344199584 11042461 complement(1451539..1452156) 1 NC_015942.1 PFAM: Manganese/iron superoxide dismutase, C-terminal; KEGG: afr:AFE_1898 superoxide dismutase; Manganese/iron superoxide dismutase 1452156 11042461 Acife_1434 Acidithiobacillus ferrivorans SS3 Manganese/iron superoxide dismutase YP_004783910.1 1451539 R 743299 CDS YP_004783911.1 344199585 11044243 1452314..1452862 1 NC_015942.1 KEGG: afr:AFE_1900 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, putative; TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase 1452862 11044243 Acife_1435 Acidithiobacillus ferrivorans SS3 CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyltransferase YP_004783911.1 1452314 D 743299 CDS YP_004783912.1 344199586 11042462 1452859..1453575 1 NC_015942.1 KEGG: afe:Lferr_1576 DnaA regulatory inactivator Hda; TIGRFAM: Chromosomal replication control, regulator Hda; PFAM: Chromosomal replication control, initiator (DnaA)/regulator (Hda); DnaA regulatory inactivator Hda 1453575 11042462 Acife_1436 Acidithiobacillus ferrivorans SS3 DnaA regulatory inactivator Hda YP_004783912.1 1452859 D 743299 CDS YP_004783913.1 344199587 11042463 1453572..1454453 1 NC_015942.1 KEGG: afe:Lferr_1577 ribonuclease BN; TIGRFAM: Ribonuclease BN; PFAM: Ribonuclease BN-related; ribonuclease BN 1454453 11042463 Acife_1437 Acidithiobacillus ferrivorans SS3 ribonuclease BN YP_004783913.1 1453572 D 743299 CDS YP_004783914.1 344199588 11042464 1454550..1455011 1 NC_015942.1 PFAM: Protein of unknown function DUF177; KEGG: afr:AFE_1903 hypothetical protein; hypothetical protein 1455011 11042464 Acife_1438 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783914.1 1454550 D 743299 CDS YP_004783915.1 344199589 11042465 1455052..1455237 1 NC_015942.1 TIGRFAM: Ribosomal protein L32p; HAMAP: Ribosomal protein L32p; KEGG: afr:AFE_1904 50S ribosomal protein L32; PFAM: Ribosomal protein L32p; 50S ribosomal protein L32 1455237 11042465 Acife_1439 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L32 YP_004783915.1 1455052 D 743299 CDS YP_004783916.1 344199590 11042466 1455275..1456300 1 NC_015942.1 TIGRFAM: Phospholipid biosynthesis protein, PlsX like; HAMAP: Phospholipid biosynthesis protein, PlsX like; KEGG: afr:AFE_1905 fatty acid/phospholipid synthesis protein PlsX; PFAM: Fatty acid synthesis plsX protein; phosphate acyltransferase 1456300 11042466 Acife_1440 Acidithiobacillus ferrivorans SS3 phosphate acyltransferase YP_004783916.1 1455275 D 743299 CDS YP_004783917.1 344199591 11042467 1456297..1457241 1 NC_015942.1 TIGRFAM: Beta-ketoacyl-acyl carrier protein synthase III (FabH); HAMAP: Beta-ketoacyl-acyl carrier protein synthase III (FabH); KEGG: afr:AFE_1906 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C-terminal; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-ACP synthase III 1457241 11042467 Acife_1441 Acidithiobacillus ferrivorans SS3 3-oxoacyl-ACP synthase III YP_004783917.1 1456297 D 743299 CDS YP_004783918.1 344199592 11044244 1457280..1458215 1 NC_015942.1 KEGG: afr:AFE_1907 malonyl CoA-acyl carrier protein transacylase; TIGRFAM: Malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; malonyl CoA-acyl carrier protein transacylase 1458215 11044244 Acife_1442 Acidithiobacillus ferrivorans SS3 malonyl CoA-acyl carrier protein transacylase YP_004783918.1 1457280 D 743299 CDS YP_004783919.1 344199593 11042468 1458215..1458964 1 NC_015942.1 KEGG: afr:AFE_1908 3-oxoacyl-(acyl-carrier-protein) reductase; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: Short-chain dehydrogenase/reductase SDR; 3-oxoacyl-ACP reductase 1458964 11042468 Acife_1443 Acidithiobacillus ferrivorans SS3 3-oxoacyl-ACP reductase YP_004783919.1 1458215 D 743299 CDS YP_004783920.1 344199594 11042469 1459049..1459297 1 NC_015942.1 TIGRFAM: Acyl carrier protein (ACP); HAMAP: Acyl carrier protein (ACP); KEGG: afr:AFE_1909 acyl carrier protein; PFAM: Phosphopantetheine-binding; acyl carrier protein 1459297 11042469 Acife_1444 Acidithiobacillus ferrivorans SS3 acyl carrier protein YP_004783920.1 1459049 D 743299 CDS YP_004783921.1 344199595 11042470 1459336..1460577 1 NC_015942.1 KEGG: afr:AFE_1910 3-oxoacyl-(acyl-carrier-protein) synthase II; TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase, N-terminal; Beta-ketoacyl synthase, C-terminal; 3-oxoacyl-ACP synthase II 1460577 11042470 Acife_1445 Acidithiobacillus ferrivorans SS3 3-oxoacyl-ACP synthase II YP_004783921.1 1459336 D 743299 CDS YP_004783922.1 344199596 11042471 1460586..1461440 1 NC_015942.1 KEGG: afr:AFE_1911 4-amino-4-deoxychorismate lyase, putative; TIGRFAM: Aminodeoxychorismate lyase, class IV; PFAM: Aminotransferase, class IV; aminodeoxychorismate lyase 1461440 11042471 Acife_1446 Acidithiobacillus ferrivorans SS3 aminodeoxychorismate lyase YP_004783922.1 1460586 D 743299 CDS YP_004783923.1 344199597 11044245 1461437..1462450 1 NC_015942.1 KEGG: afe:Lferr_1587 aminodeoxychorismate lyase; TIGRFAM: Uncharacterised protein family YceG-like; PFAM: Uncharacterised protein family YceG-like; aminodeoxychorismate lyase 1462450 11044245 Acife_1447 Acidithiobacillus ferrivorans SS3 aminodeoxychorismate lyase YP_004783923.1 1461437 D 743299 CDS YP_004783924.1 344199598 11042472 1462447..1463097 1 NC_015942.1 TIGRFAM: Thymidylate kinase; HAMAP: Thymidylate kinase; KEGG: afr:AFE_1913 thymidylate kinase; PFAM: Thymidylate kinase-like; thymidylate kinase 1463097 11042472 Acife_1448 Acidithiobacillus ferrivorans SS3 thymidylate kinase YP_004783924.1 1462447 D 743299 CDS YP_004783925.1 344199599 11042473 1463094..1464095 1 NC_015942.1 KEGG: afr:AFE_1914 DNA polymerase III, delta prime subunit; DNA polymerase III subunit delta' 1464095 11042473 Acife_1449 Acidithiobacillus ferrivorans SS3 DNA polymerase III subunit delta' YP_004783925.1 1463094 D 743299 CDS YP_004783926.1 344199600 11042474 1464079..1464435 1 NC_015942.1 PFAM: Type IV pilus assembly PilZ; KEGG: afr:AFE_1915 type IV pilus assembly protein PilZ, putative; type IV pilus assembly PilZ 1464435 11042474 Acife_1450 Acidithiobacillus ferrivorans SS3 type IV pilus assembly PilZ YP_004783926.1 1464079 D 743299 CDS YP_004783927.1 344199601 11042478 1465642..1466397 1 NC_015942.1 hypothetical protein 1466397 11042478 Acife_1453 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783927.1 1465642 D 743299 CDS YP_004783928.1 344199602 11044246 1466833..1467048 1 NC_015942.1 KEGG: rrs:RoseRS_1787 hypothetical protein; hypothetical protein 1467048 11044246 Acife_1454 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783928.1 1466833 D 743299 CDS YP_004783929.1 344199603 11044247 1467045..1467260 1 NC_015942.1 PFAM: YcfA-like; KEGG: cph:Cpha266_1441 YcfA family protein; YcfA family protein 1467260 11044247 Acife_1455 Acidithiobacillus ferrivorans SS3 YcfA family protein YP_004783929.1 1467045 D 743299 CDS YP_004783930.1 344199604 11042479 complement(1467775..1468200) 1 NC_015942.1 PFAM: Protein of unknown function DUF302; KEGG: aca:ACP_2485 hypothetical protein; hypothetical protein 1468200 11042479 Acife_1456 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783930.1 1467775 R 743299 CDS YP_004783931.1 344199605 11042480 complement(1468202..1468900) 1 NC_015942.1 KEGG: eba:ebA6282 nitrate reductase, gamma subunit; TIGRFAM: Nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; respiratory nitrate reductase subunit gamma 1468900 11042480 Acife_1457 Acidithiobacillus ferrivorans SS3 respiratory nitrate reductase subunit gamma YP_004783931.1 1468202 R 743299 CDS YP_004783932.1 344199606 11042481 complement(1468897..1469442) 1 NC_015942.1 KEGG: tbd:Tbd_1405 respiratory nitrate reductase chaperone NarJ; TIGRFAM: Nitrate reductase, delta subunit; PFAM: Nitrate reductase, delta subunit; nitrate reductase molybdenum cofactor assembly chaperone 1469442 11042481 Acife_1458 Acidithiobacillus ferrivorans SS3 nitrate reductase molybdenum cofactor assembly chaperone YP_004783932.1 1468897 R 743299 CDS YP_004783933.1 344199607 11042482 complement(1469445..1471004) 1 NC_015942.1 TIGRFAM: Nitrate reductase, beta subunit; KEGG: tbd:Tbd_1404 respiratory nitrate reductase beta subunit; nitrate reductase subunit beta 1471004 11042482 Acife_1459 Acidithiobacillus ferrivorans SS3 nitrate reductase subunit beta YP_004783933.1 1469445 R 743299 CDS YP_004783934.1 344199608 11044248 complement(1471001..1474765) 1 NC_015942.1 KEGG: eba:ebA6286 nitrate reductase, alpha chain; TIGRFAM: Nitrate reductase, alpha subunit; PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; nitrate reductase subunit alpha 1474765 11044248 Acife_1460 Acidithiobacillus ferrivorans SS3 nitrate reductase subunit alpha YP_004783934.1 1471001 R 743299 CDS YP_004783935.1 344199609 11044249 complement(1474815..1475999) 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: amv:ACMV_16320 putative major facilitator superfamily transporter; major facilitator superfamily protein 1475999 11044249 Acife_1461 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004783935.1 1474815 R 743299 CDS YP_004783936.1 344199610 11042483 1476361..1476894 1 NC_015942.1 PFAM: Haemerythrin/HHE cation-binding motif; KEGG: bvi:Bcep1808_6183 hemerythrin HHE cation binding domain-containing protein; Hemerythrin HHE cation binding domain-containing protein 1476894 11042483 Acife_1462 Acidithiobacillus ferrivorans SS3 Hemerythrin HHE cation binding domain-containing protein YP_004783936.1 1476361 D 743299 CDS YP_004783937.1 344199611 11042484 1477009..1477476 1 NC_015942.1 PFAM: Protein of unknown function DUF1971; KEGG: afr:AFE_1844 ferredoxin; hypothetical protein 1477476 11042484 Acife_1463 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783937.1 1477009 D 743299 CDS YP_004783938.1 344199612 11042485 1477607..1478257 1 NC_015942.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: nwa:Nwat_0016 glutathione S-transferase domain-containing protein; glutathione S-transferase domain-containing protein 1478257 11042485 Acife_1464 Acidithiobacillus ferrivorans SS3 glutathione S-transferase domain-containing protein YP_004783938.1 1477607 D 743299 CDS YP_004783939.1 344199613 11042486 1478374..1478613 1 NC_015942.1 KEGG: afr:AFE_1845 hypothetical protein; hypothetical protein 1478613 11042486 Acife_1465 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783939.1 1478374 D 743299 CDS YP_004783940.1 344199614 11044250 1478606..1479724 1 NC_015942.1 PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: afr:AFE_1847 C4-dicarboxylate transporter/malic acid transport protein, putative; C4-dicarboxylate transporter/malic acid transport protein 1479724 11044250 Acife_1466 Acidithiobacillus ferrivorans SS3 C4-dicarboxylate transporter/malic acid transport protein YP_004783940.1 1478606 D 743299 CDS YP_004783941.1 344199615 11042487 1479884..1480846 1 NC_015942.1 KEGG: afr:AFE_1028 hypothetical protein; hypothetical protein 1480846 11042487 Acife_1467 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783941.1 1479884 D 743299 CDS YP_004783942.1 344199616 11042488 complement(1481344..1481550) 1 NC_015942.1 KEGG: afr:AFE_1545 molybdenum-pterin binding protein; TIGRFAM: Molybdenum-pterin binding; PFAM: Transport-associated OB, type 1; molybdenum-pterin binding protein 1481550 11042488 Acife_1468 Acidithiobacillus ferrivorans SS3 molybdenum-pterin binding protein YP_004783942.1 1481344 R 743299 CDS YP_004783943.1 344199617 11042489 complement(1481689..1483017) 1 NC_015942.1 KEGG: afr:AFE_1497 hypothetical protein; hypothetical protein 1483017 11042489 Acife_1469 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783943.1 1481689 R 743299 CDS YP_004783944.1 344199618 11042491 complement(1485257..1485967) 1 NC_015942.1 KEGG: afr:AFE_1997 autoinducer-binding transcriptional regulator, LuxR family; PFAM: Autoinducer-binding; Transcription regulator LuxR, C-terminal; SMART: Transcription regulator LuxR, C-terminal; LuxR family transcriptional regulator 1485967 11042491 Acife_1471 Acidithiobacillus ferrivorans SS3 LuxR family transcriptional regulator YP_004783944.1 1485257 R 743299 CDS YP_004783945.1 344199619 11042492 1486433..1486981 1 NC_015942.1 KEGG: azo:azo2571 hypothetical protein; hypothetical protein 1486981 11042492 Acife_1472 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783945.1 1486433 D 743299 CDS YP_004783946.1 344199620 11042493 1487081..1487440 1 NC_015942.1 KEGG: glo:Glov_0119 hypothetical protein; hypothetical protein 1487440 11042493 Acife_1473 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783946.1 1487081 D 743299 CDS YP_004783947.1 344199621 11044251 1487493..1488794 1 NC_015942.1 TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain; KEGG: mag:amb4010 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; tryptophan synthase beta chain 1488794 11044251 Acife_1474 Acidithiobacillus ferrivorans SS3 tryptophan synthase beta chain YP_004783947.1 1487493 D 743299 CDS YP_004783948.1 344199622 11042495 complement(1490054..1490995) 1 NC_015942.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: ypy:YPK_1524 hypothetical protein; hypothetical protein 1490995 11042495 Acife_1477 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783948.1 1490054 R 743299 CDS YP_004783949.1 344199623 11042496 1491270..1491617 1 NC_015942.1 KEGG: btb:BMB171_C1784 ArsR family transcriptional regulator; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; regulatory protein ArsR 1491617 11042496 Acife_1478 Acidithiobacillus ferrivorans SS3 regulatory protein ArsR YP_004783949.1 1491270 D 743299 CDS YP_004783950.1 344199624 11042497 1491774..1492559 1 NC_015942.1 KEGG: rah:Rahaq_4788 transcriptional regulator; transcriptional regulator 1492559 11042497 Acife_1479 Acidithiobacillus ferrivorans SS3 transcriptional regulator YP_004783950.1 1491774 D 743299 CDS YP_004783951.1 344199625 11044253 1492660..1493031 1 NC_015942.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: afe:Lferr_1669 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 1493031 11044253 Acife_1480 Acidithiobacillus ferrivorans SS3 glyoxalase/bleomycin resistance protein/dioxygenase YP_004783951.1 1492660 D 743299 CDS YP_004783952.1 344199626 11044254 1493028..1493456 1 NC_015942.1 KEGG: mci:Mesci_1735 hypothetical protein; HAMAP: UPF0310 protein; PFAM: Uncharacterised protein family UPF0310; hypothetical protein 1493456 11044254 Acife_1481 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783952.1 1493028 D 743299 CDS YP_004783953.1 344199627 11042498 complement(1493520..1494131) 1 NC_015942.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: pol:Bpro_2654 TetR family transcriptional regulator; TetR family transcriptional regulator 1494131 11042498 Acife_1482 Acidithiobacillus ferrivorans SS3 TetR family transcriptional regulator YP_004783953.1 1493520 R 743299 CDS YP_004783954.1 344199628 11042499 1494205..1494672 1 NC_015942.1 PFAM: Protein of unknown function DUF1348; KEGG: aba:Acid345_2217 hypothetical protein; hypothetical protein 1494672 11042499 Acife_1483 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783954.1 1494205 D 743299 CDS YP_004783955.1 344199629 11042500 1494746..1495942 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: sil:SPO3481 hypothetical protein; major facilitator superfamily protein 1495942 11042500 Acife_1484 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004783955.1 1494746 D 743299 CDS YP_004783956.1 344199630 11042501 1496103..1497188 1 NC_015942.1 TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: pfl:PFL_0930 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II; histidinol-phosphate aminotransferase 1497188 11042501 Acife_1485 Acidithiobacillus ferrivorans SS3 histidinol-phosphate aminotransferase YP_004783956.1 1496103 D 743299 CDS YP_004783957.1 344199631 11044255 1497299..1497844 1 NC_015942.1 KEGG: afr:AFE_2803 FMN reductase, NADPH-dependent; manually curated; PFAM: NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1497844 11044255 Acife_1486 Acidithiobacillus ferrivorans SS3 NADPH-dependent FMN reductase YP_004783957.1 1497299 D 743299 CDS YP_004783958.1 344199632 11042502 1497844..1498323 1 NC_015942.1 PFAM: Polyketide cyclase/dehydrase; KEGG: afr:AFE_2804 hypothetical protein; polyketide cyclase/dehydrase 1498323 11042502 Acife_1487 Acidithiobacillus ferrivorans SS3 polyketide cyclase/dehydrase YP_004783958.1 1497844 D 743299 CDS YP_004783959.1 344199633 11042503 1498325..1498417 1 NC_015942.1 hypothetical protein 1498417 11042503 Acife_1488 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783959.1 1498325 D 743299 CDS YP_004783960.1 344199634 11042504 1499279..1499938 1 NC_015942.1 PFAM: Negative transcriptional regulator; KEGG: afr:AFE_2006 transcriptional regulator, putative; FMN-binding negative transcriptional regulator 1499938 11042504 Acife_1490 Acidithiobacillus ferrivorans SS3 FMN-binding negative transcriptional regulator YP_004783960.1 1499279 D 743299 CDS YP_004783961.1 344199635 11042505 1499935..1501140 1 NC_015942.1 PFAM: ThiJ/PfpI; GCN5-related N-acetyltransferase; KEGG: afr:AFE_2005 isonitrile hydratase, putative; ThiJ/PfpI domain-containing protein 1501140 11042505 Acife_1491 Acidithiobacillus ferrivorans SS3 ThiJ/PfpI domain-containing protein YP_004783961.1 1499935 D 743299 CDS YP_004783962.1 344199636 11042506 1501146..1501955 1 NC_015942.1 KEGG: gca:Galf_1512 phenazine biosynthesis protein PhzF family; TIGRFAM: Phenazine biosynthesis PhzC/PhzF protein; PFAM: Phenazine biosynthesis PhzC/PhzF protein; PhzF family phenazine biosynthesis protein 1501955 11042506 Acife_1492 Acidithiobacillus ferrivorans SS3 PhzF family phenazine biosynthesis protein YP_004783962.1 1501146 D 743299 CDS YP_004783963.1 344199637 11042507 1502159..1502569 1 NC_015942.1 KEGG: tin:Tint_2008 glutathione-dependent formaldehyde-activating GFA; manually curated; PFAM: Glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 1502569 11042507 Acife_1493 Acidithiobacillus ferrivorans SS3 glutathione-dependent formaldehyde-activating protein YP_004783963.1 1502159 D 743299 CDS YP_004783964.1 344199638 11042508 1502691..1503161 1 NC_015942.1 TIGRFAM: Peptidase A8, signal peptidase II; HAMAP: Peptidase A8, signal peptidase II; KEGG: dsh:Dshi_0359 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II; lipoprotein signal peptidase 1503161 11042508 Acife_1494 Acidithiobacillus ferrivorans SS3 lipoprotein signal peptidase YP_004783964.1 1502691 D 743299 CDS YP_004783965.1 344199639 11042510 complement(1503874..1504134) 1 NC_015942.1 KEGG: xcv:XCVd0102 hypothetical protein; hypothetical protein 1504134 11042510 Acife_1496 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783965.1 1503874 R 743299 CDS YP_004783966.1 344199640 11044257 complement(1504240..1504500) 1 NC_015942.1 hypothetical protein 1504500 11044257 Acife_1497 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783966.1 1504240 R 743299 CDS YP_004783967.1 344199641 11042512 complement(1504935..1506227) 1 NC_015942.1 KEGG: rpx:Rpdx1_0487 HipA N-terminal domain-containing protein; TIGRFAM: HipA, N-terminal; PFAM: HipA-like, C-terminal; HipA-like, N-terminal; HipA N-terminal domain-containing protein 1506227 11042512 Acife_1499 Acidithiobacillus ferrivorans SS3 HipA N-terminal domain-containing protein YP_004783967.1 1504935 R 743299 CDS YP_004783968.1 344199642 11042513 complement(1506230..1506475) 1 NC_015942.1 KEGG: hba:Hbal_3181 transcriptional regulator, XRE family; PFAM: Helix-turn-helix type 3; SMART: Helix-turn-helix type 3; helix-turn-helix domain-containing protein 1506475 11042513 Acife_1500 Acidithiobacillus ferrivorans SS3 helix-turn-helix domain-containing protein YP_004783968.1 1506230 R 743299 CDS YP_004783969.1 344199643 11044258 1507075..1508763 1 NC_015942.1 TIGRFAM: DNA polymerase III, subunit gamma/ tau; PFAM: ATPase, AAA-type, core; KEGG: afr:AFE_1919 DNA polymerase III, subunits gamma and tau; SMART: ATPase, AAA+ type, core; DNA polymerase III subunits gamma and tau 1508763 11044258 Acife_1501 Acidithiobacillus ferrivorans SS3 DNA polymerase III subunits gamma and tau YP_004783969.1 1507075 D 743299 CDS YP_004783970.1 344199644 11044259 1508790..1509113 1 NC_015942.1 TIGRFAM: Uncharacterised protein family UPF0133; HAMAP: Uncharacterised protein family UPF0133; KEGG: afr:AFE_1920 hypothetical protein; PFAM: Uncharacterised protein family UPF0133; hypothetical protein 1509113 11044259 Acife_1502 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783970.1 1508790 D 743299 CDS YP_004783971.1 344199645 11042515 1509120..1509719 1 NC_015942.1 KEGG: afr:AFE_1921 recombination protein RecR; PFAM: Toprim domain; Zinc finger C4-type, RecR; manually curated; TIGRFAM: RecR protein; SMART: Toprim domain, subgroup; HAMAP: Recombination protein recR; recombination protein recR 1509719 11042515 Acife_1503 Acidithiobacillus ferrivorans SS3 recombination protein recR YP_004783971.1 1509120 D 743299 CDS YP_004783972.1 344199646 11042516 1509780..1510997 1 NC_015942.1 PFAM: Ammonium transporter; KEGG: afr:AFE_1922 ammonium transporter family protein; ammonium transporter 1510997 11042516 Acife_1504 Acidithiobacillus ferrivorans SS3 ammonium transporter YP_004783972.1 1509780 D 743299 CDS YP_004783973.1 344199647 11042517 1511000..1511851 1 NC_015942.1 KEGG: afr:AFE_1923 YjeF-related protein; TIGRFAM: Uncharacterised protein family, carbohydrate kinase-related; PFAM: Uncharacterised protein family, carbohydrate kinase-related; YjeF-like protein 1511851 11042517 Acife_1505 Acidithiobacillus ferrivorans SS3 YjeF-like protein YP_004783973.1 1511000 D 743299 CDS YP_004783974.1 344199648 11042518 1511838..1513187 1 NC_015942.1 KEGG: afr:AFE_1924 adenosylmethionine-8-amino-7-oxononanoate aminotransferase; TIGRFAM: Adenosylmethionine--8-amino-7-oxononanoate aminotransferase; PFAM: Aminotransferase class-III; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 1513187 11042518 Acife_1506 Acidithiobacillus ferrivorans SS3 adenosylmethionine-8-amino-7-oxononanoate aminotransferase YP_004783974.1 1511838 D 743299 CDS YP_004783975.1 344199649 11044260 1513187..1513642 1 NC_015942.1 KEGG: afr:AFE_1925 CBS domain protein; PFAM: Cystathionine beta-synthase, core; SMART: Cystathionine beta-synthase, core; CBS domain-containing membrane protein 1513642 11044260 Acife_1507 Acidithiobacillus ferrivorans SS3 CBS domain-containing membrane protein YP_004783975.1 1513187 D 743299 CDS YP_004783976.1 344199650 11044261 1513655..1514140 1 NC_015942.1 KEGG: afr:AFE_1926 conserved hypothetical protein TIGR00150; TIGRFAM: Uncharacterised protein family UPF0079, ATPase bacteria; PFAM: Uncharacterised protein family UPF0079, ATPase bacteria; ATPase 1514140 11044261 Acife_1508 Acidithiobacillus ferrivorans SS3 ATPase YP_004783976.1 1513655 D 743299 CDS YP_004783977.1 344199651 11042519 1514130..1515923 1 NC_015942.1 TIGRFAM: DNA mismatch repair protein, N-terminal; HAMAP: DNA mismatch repair protein mutL; KEGG: afr:AFE_1927 mismatch repair protein MutL; PFAM: MutL, C-terminal, dimerisation; DNA mismatch repair protein, C-terminal; ATP-binding region, ATPase-like; DNA mismatch repair protein mutL 1515923 11042519 Acife_1509 Acidithiobacillus ferrivorans SS3 DNA mismatch repair protein mutL YP_004783977.1 1514130 D 743299 CDS YP_004783978.1 344199652 11042520 1515920..1516846 1 NC_015942.1 TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; HAMAP: tRNA dimethylallyltransferase; KEGG: afr:AFE_1928 tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase; tRNA dimethylallyltransferase 1516846 11042520 Acife_1510 Acidithiobacillus ferrivorans SS3 tRNA dimethylallyltransferase YP_004783978.1 1515920 D 743299 CDS YP_004783979.1 344199653 11042521 1516926..1517396 1 NC_015942.1 HAMAP: Nucleoside diphosphate kinase; PFAM: Nucleoside diphosphate kinase, core; KEGG: afr:AFE_1929 nucleoside diphosphate kinase; SMART: Nucleoside diphosphate kinase, core; nucleoside diphosphate kinase 1517396 11042521 Acife_1511 Acidithiobacillus ferrivorans SS3 nucleoside diphosphate kinase YP_004783979.1 1516926 D 743299 CDS YP_004783980.1 344199654 11042522 1517397..1518488 1 NC_015942.1 TIGRFAM: Ribosomal RNA large subunit methyltransferase RlmN; HAMAP: Ribosomal RNA large subunit methyltransferase RlmN; KEGG: afe:Lferr_1602 radical SAM enzyme, Cfr family; PFAM: Radical SAM; ribosomal RNA large subunit methyltransferase N 1518488 11042522 Acife_1512 Acidithiobacillus ferrivorans SS3 ribosomal RNA large subunit methyltransferase N YP_004783980.1 1517397 D 743299 CDS YP_004783981.1 344199655 11042523 1518485..1519330 1 NC_015942.1 KEGG: afe:Lferr_1603 type IV pilus biogenesis/stability protein PilW; TIGRFAM: Pilus biogenesis/stability type IV, PilW; PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR2; type IV pilus biogenesis/stability protein PilW 1519330 11042523 Acife_1513 Acidithiobacillus ferrivorans SS3 type IV pilus biogenesis/stability protein PilW YP_004783981.1 1518485 D 743299 CDS YP_004783982.1 344199656 11042524 1519343..1520323 1 NC_015942.1 SMART: Helix-turn-helix type 3; KEGG: afe:Lferr_1604 XRE family transcriptional regulator; XRE family transcriptional regulator 1520323 11042524 Acife_1514 Acidithiobacillus ferrivorans SS3 XRE family transcriptional regulator YP_004783982.1 1519343 D 743299 CDS YP_004783983.1 344199657 11042525 1520313..1521413 1 NC_015942.1 TIGRFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; HAMAP: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; KEGG: afr:AFE_1933 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase; PFAM: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1521413 11042525 Acife_1515 Acidithiobacillus ferrivorans SS3 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase YP_004783983.1 1520313 D 743299 CDS YP_004783984.1 344199658 11044262 1521446..1522765 1 NC_015942.1 TIGRFAM: Histidyl-tRNA synthetase, class IIa, subgroup; HAMAP: Histidyl-tRNA synthetase, class IIa, subgroup; KEGG: afr:AFE_1934 histidyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; histidyl-tRNA synthetase 1522765 11044262 Acife_1516 Acidithiobacillus ferrivorans SS3 histidyl-tRNA synthetase YP_004783984.1 1521446 D 743299 CDS YP_004783985.1 344199659 11042526 1522762..1523373 1 NC_015942.1 KEGG: afr:AFE_1935 hypothetical protein; hypothetical protein 1523373 11042526 Acife_1517 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783985.1 1522762 D 743299 CDS YP_004783986.1 344199660 11042527 1523370..1524557 1 NC_015942.1 TIGRFAM: Outer membrane assembly lipoprotein YfgL; PFAM: Pyrrolo-quinoline quinone repeat; KEGG: afr:AFE_1936 PQQ enzyme repeat domain protein; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; outer membrane assembly lipoprotein YfgL 1524557 11042527 Acife_1518 Acidithiobacillus ferrivorans SS3 outer membrane assembly lipoprotein YfgL YP_004783986.1 1523370 D 743299 CDS YP_004783987.1 344199661 11042528 1524568..1525917 1 NC_015942.1 TIGRFAM: GTP-binding, EngA; Small GTP-binding protein; HAMAP: GTP-binding, EngA; KEGG: afr:AFE_1937 GTP-binding protein EngA; PFAM: GTP-binding protein, HSR1-related; GTP-binding protein engA 1525917 11042528 Acife_1519 Acidithiobacillus ferrivorans SS3 GTP-binding protein engA YP_004783987.1 1524568 D 743299 CDS YP_004783988.1 344199662 11042529 1525918..1526334 1 NC_015942.1 KEGG: afr:AFE_1938 hypothetical protein; hypothetical protein 1526334 11042529 Acife_1520 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783988.1 1525918 D 743299 CDS YP_004783989.1 344199663 11042530 1526306..1526809 1 NC_015942.1 KEGG: afr:AFE_2314 phosphohistidine phosphatase SixA; TIGRFAM: Phosphohistidine phosphatase SixA, subgroup; PFAM: Phosphoglycerate mutase; phosphohistidine phosphatase SixA 1526809 11042530 Acife_1521 Acidithiobacillus ferrivorans SS3 phosphohistidine phosphatase SixA YP_004783989.1 1526306 D 743299 CDS YP_004783990.1 344199664 11044263 1526882..1527253 1 NC_015942.1 KEGG: afr:AFE_2508 hypothetical protein; hypothetical protein 1527253 11044263 Acife_1522 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004783990.1 1526882 D 743299 CDS YP_004783991.1 344199665 11042531 1527520..1528608 1 NC_015942.1 KEGG: afe:Lferr_1611 phosphate ABC transporter periplasmic phosphate-binding protein; TIGRFAM: Periplasmic phosphate binding protein; PFAM: Bacterial extracellular solute-binding, family 1; phosphate ABC transporter substrate-binding protein 1528608 11042531 Acife_1523 Acidithiobacillus ferrivorans SS3 phosphate ABC transporter substrate-binding protein YP_004783991.1 1527520 D 743299 CDS YP_004783992.1 344199666 11042532 1528731..1529687 1 NC_015942.1 KEGG: afr:AFE_1940 phosphate ABC transporter, permease protein PstC; TIGRFAM: Phosphate ABC transporter, permease protein PstC; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 1529687 11042532 Acife_1524 Acidithiobacillus ferrivorans SS3 phosphate ABC transporter permease YP_004783992.1 1528731 D 743299 CDS YP_004783993.1 344199667 11044264 1529687..1530598 1 NC_015942.1 KEGG: afr:AFE_1941 phosphate ABC transporter, permease protein, putative; TIGRFAM: Phosphate transport system permease protein 2; PFAM: Binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 1530598 11044264 Acife_1525 Acidithiobacillus ferrivorans SS3 phosphate ABC transporter permease YP_004783993.1 1529687 D 743299 CDS YP_004783994.1 344199668 11042533 complement(1530620..1531600) 1 NC_015942.1 PFAM: Haemerythrin/HHE cation-binding motif; KEGG: afr:AFE_1942 hypothetical protein; Hemerythrin HHE cation binding domain-containing protein 1531600 11042533 Acife_1526 Acidithiobacillus ferrivorans SS3 Hemerythrin HHE cation binding domain-containing protein YP_004783994.1 1530620 R 743299 CDS YP_004783995.1 344199669 11042534 complement(1532276..1532992) 1 NC_015942.1 KEGG: afr:AFE_2429 [Ni/Fe] hydrogenase, b-type cytochrome subunit, putative; (Ni/Fe) hydrogenase, b-type cytochrome subunit 1532992 11042534 Acife_1527 Acidithiobacillus ferrivorans SS3 (Ni/Fe) hydrogenase, b-type cytochrome subunit YP_004783995.1 1532276 R 743299 CDS YP_004783996.1 344199670 11042535 1533246..1534376 1 NC_015942.1 PFAM: Carbohydrate-selective porin OprB; KEGG: afr:AFE_2250 carbohydrate-selective porin, OprB family; carbohydrate-selective porin OprB 1534376 11042535 Acife_1528 Acidithiobacillus ferrivorans SS3 carbohydrate-selective porin OprB YP_004783996.1 1533246 D 743299 CDS YP_004783997.1 344199671 11044265 1534606..1535298 1 NC_015942.1 PFAM: Major intrinsic protein; KEGG: afr:AFE_0154 MIP family channel protein; major intrinsic protein 1535298 11044265 Acife_1529 Acidithiobacillus ferrivorans SS3 major intrinsic protein YP_004783997.1 1534606 D 743299 CDS YP_004783998.1 344199672 11042536 complement(1535416..1537179) 1 NC_015942.1 TIGRFAM: ATPase, anion-transporting; PFAM: ATPase, anion-transporting; KEGG: psa:PST_0237 arsenical pump-driving ATPase; SMART: ATPase, AAA+ type, core; arsenite-activated ATPase ArsA 1537179 11042536 Acife_1530 Acidithiobacillus ferrivorans SS3 arsenite-activated ATPase ArsA YP_004783998.1 1535416 R 743299 CDS YP_004783999.1 344199673 11042537 complement(1537220..1537582) 1 NC_015942.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: psa:PST_0238 arsenic operon regulator; Arsenical resistance operon trans-acting repressor ArsD 1537582 11042537 Acife_1531 Acidithiobacillus ferrivorans SS3 Arsenical resistance operon trans-acting repressor ArsD YP_004783999.1 1537220 R 743299 CDS YP_004784000.1 344199674 11044266 complement(1537622..1538107) 1 NC_015942.1 KEGG: afr:AFE_2860 arsenate reductase; PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; protein tyrosine phosphatase 1538107 11044266 Acife_1532 Acidithiobacillus ferrivorans SS3 protein tyrosine phosphatase YP_004784000.1 1537622 R 743299 CDS YP_004784001.1 344199675 11042538 complement(1538107..1538469) 1 NC_015942.1 SMART: HTH transcriptional regulator, ArsR; KEGG: afr:AFE_2859 transcriptional regulator, ArsR; regulatory protein ArsR 1538469 11042538 Acife_1533 Acidithiobacillus ferrivorans SS3 regulatory protein ArsR YP_004784001.1 1538107 R 743299 CDS YP_004784002.1 344199676 11042539 complement(1538611..1539546) 1 NC_015942.1 KEGG: tin:Tint_1169 diguanylate cyclase/phosphodiesterase with GAF sensor; hypothetical protein 1539546 11042539 Acife_1534 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784002.1 1538611 R 743299 CDS YP_004784003.1 344199677 11044267 complement(1539909..1540322) 1 NC_015942.1 PFAM: PilT protein, N-terminal; KEGG: gob:Gobs_1669 PilT protein domain-containing protein; PilT protein domain-containing protein 1540322 11044267 Acife_1535 Acidithiobacillus ferrivorans SS3 PilT protein domain-containing protein YP_004784003.1 1539909 R 743299 CDS YP_004784004.1 344199678 11042540 complement(1540309..1540524) 1 NC_015942.1 PFAM: Protein of unknown function DUF2191; KEGG: tmt:Tmath_2080 protein of unknown function DUF2191; hypothetical protein 1540524 11042540 Acife_1536 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784004.1 1540309 R 743299 CDS YP_004784005.1 344199679 11044268 complement(1540549..1540647) 1 NC_015942.1 hypothetical protein 1540647 11044268 Acife_1537 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784005.1 1540549 R 743299 CDS YP_004784006.1 344199680 11042541 complement(1540700..1540927) 1 NC_015942.1 TIGRFAM: Prevent-host-death protein; KEGG: app:CAP2UW1_3555 prevent-host-death family protein; prevent-host-death family protein 1540927 11042541 Acife_1538 Acidithiobacillus ferrivorans SS3 prevent-host-death family protein YP_004784006.1 1540700 R 743299 CDS YP_004784007.1 344199681 11042542 complement(1541083..1541877) 1 NC_015942.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: plu:plu0253 hypothetical protein; filamentation induced by cAMP protein Fic 1541877 11042542 Acife_1539 Acidithiobacillus ferrivorans SS3 filamentation induced by cAMP protein Fic YP_004784007.1 1541083 R 743299 CDS YP_004784008.1 344199682 11042544 complement(1542364..1542690) 1 NC_015942.1 PFAM: PemK-like protein; KEGG: rpf:Rpic12D_5124 transcriptional modulator of MazE/toxin, MazF; transcriptional modulator of MazE/toxin, MazF 1542690 11042544 Acife_1541 Acidithiobacillus ferrivorans SS3 transcriptional modulator of MazE/toxin, MazF YP_004784008.1 1542364 R 743299 CDS YP_004784009.1 344199683 11042545 complement(1542687..1542944) 1 NC_015942.1 PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: rpf:Rpic12D_5125 transcriptional regulator/antitoxin, MazE; SpoVT/AbrB domain-containing protein 1542944 11042545 Acife_1542 Acidithiobacillus ferrivorans SS3 SpoVT/AbrB domain-containing protein YP_004784009.1 1542687 R 743299 CDS YP_004784010.1 344199684 11042546 complement(1543165..1543437) 1 NC_015942.1 KEGG: hna:Hneap_1625 addiction module toxin, RelE/StbE family; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system; RelE/StbE family addiction module toxin 1543437 11042546 Acife_1543 Acidithiobacillus ferrivorans SS3 RelE/StbE family addiction module toxin YP_004784010.1 1543165 R 743299 CDS YP_004784011.1 344199685 11044269 complement(1543421..1543645) 1 NC_015942.1 KEGG: hna:Hneap_1626 CopG domain protein DNA-binding domain protein; CopG domain-containing protein DNA-binding domain-containing protein 1543645 11044269 Acife_1544 Acidithiobacillus ferrivorans SS3 CopG domain-containing protein DNA-binding domain-containing protein YP_004784011.1 1543421 R 743299 CDS YP_004784012.1 344199686 11042547 complement(1544234..1544524) 1 NC_015942.1 PFAM: Protein of unknown function DUF1778; KEGG: azo:azo2026 hypothetical protein; hypothetical protein 1544524 11042547 Acife_1545 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784012.1 1544234 R 743299 CDS YP_004784013.1 344199687 11042548 complement(1544652..1544930) 1 NC_015942.1 PFAM: CopG-like DNA-binding; KEGG: xfa:XF2075 hypothetical protein; CopG family transcriptional regulator 1544930 11042548 Acife_1546 Acidithiobacillus ferrivorans SS3 CopG family transcriptional regulator YP_004784013.1 1544652 R 743299 CDS YP_004784014.1 344199688 11044270 complement(1544942..1545160) 1 NC_015942.1 PFAM: Protein of unknown function DUF2283; KEGG: tbd:Tbd_0450 hypothetical protein; hypothetical protein 1545160 11044270 Acife_1547 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784014.1 1544942 R 743299 CDS YP_004784015.1 344199689 11042549 complement(1545157..1545402) 1 NC_015942.1 KEGG: tau:Tola_1305 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF1778; hypothetical protein 1545402 11042549 Acife_1548 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784015.1 1545157 R 743299 CDS YP_004784016.1 344199690 11042550 complement(1545636..1549205) 1 NC_015942.1 KEGG: llo:LLO_2580 type 4 fimbrial biogenesis protein PilY1; type 4 fimbrial biogenesis protein PilY1 1549205 11042550 Acife_1549 Acidithiobacillus ferrivorans SS3 type 4 fimbrial biogenesis protein PilY1 YP_004784016.1 1545636 R 743299 CDS YP_004784017.1 344199691 11044271 complement(1549220..1549816) 1 NC_015942.1 hypothetical protein 1549816 11044271 Acife_1550 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784017.1 1549220 R 743299 CDS YP_004784018.1 344199692 11042551 complement(1549828..1551009) 1 NC_015942.1 KEGG: afr:AFE_0969 type IV pilin, putative; hypothetical protein 1551009 11042551 Acife_1551 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784018.1 1549828 R 743299 CDS YP_004784019.1 344199693 11042552 complement(1550978..1551454) 1 NC_015942.1 TIGRFAM: Pilus modification type IV, PilV; Prepilin-type cleavage/methylation, N-terminal; KEGG: tgr:Tgr7_3228 Tfp pilus assembly protein PilV-like protein; type IV pilus modification protein PilV 1551454 11042552 Acife_1552 Acidithiobacillus ferrivorans SS3 type IV pilus modification protein PilV YP_004784019.1 1550978 R 743299 CDS YP_004784020.1 344199694 11042553 complement(1551444..1552703) 1 NC_015942.1 PFAM: Type II secretion system F domain; KEGG: afr:AFE_0972 type IV pilus biogenesis protein PilC; type II secretion system F domain-containing protein 1552703 11042553 Acife_1553 Acidithiobacillus ferrivorans SS3 type II secretion system F domain-containing protein YP_004784020.1 1551444 R 743299 CDS YP_004784021.1 344199695 11044272 complement(1552783..1552995) 1 NC_015942.1 KEGG: afr:AFE_1714 hypothetical protein; hypothetical protein 1552995 11044272 Acife_1554 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784021.1 1552783 R 743299 CDS YP_004784022.1 344199696 11042554 complement(1553016..1553507) 1 NC_015942.1 hypothetical protein 1553507 11042554 Acife_1555 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784022.1 1553016 R 743299 CDS YP_004784023.1 344199697 11042555 complement(1553529..1553789) 1 NC_015942.1 hypothetical protein 1553789 11042555 Acife_1556 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784023.1 1553529 R 743299 CDS YP_004784024.1 344199698 11044273 complement(1554008..1554505) 1 NC_015942.1 KEGG: afr:AFE_0416 pilin, putative; pilin 1554505 11044273 Acife_1557 Acidithiobacillus ferrivorans SS3 pilin YP_004784024.1 1554008 R 743299 CDS YP_004784025.1 344199699 11042556 1554885..1555379 1 NC_015942.1 PFAM: Sel1-like; KEGG: afr:AFE_0409 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 1555379 11042556 Acife_1558 Acidithiobacillus ferrivorans SS3 Sel1 domain-containing protein repeat-containing protein YP_004784025.1 1554885 D 743299 CDS YP_004784026.1 344199700 11042557 complement(1555374..1555724) 1 NC_015942.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: abo:ABO_2397 dioxygenase ferredoxin reductase component; Rieske (2Fe-2S) iron-sulfur domain-containing protein 1555724 11042557 Acife_1559 Acidithiobacillus ferrivorans SS3 Rieske (2Fe-2S) iron-sulfur domain-containing protein YP_004784026.1 1555374 R 743299 CDS YP_004784027.1 344199701 11042558 complement(1555762..1556493) 1 NC_015942.1 KEGG: afe:Lferr_1541 hypothetical protein; hypothetical protein 1556493 11042558 Acife_1560 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784027.1 1555762 R 743299 CDS YP_004784028.1 344199702 11042559 complement(1556804..1557013) 1 NC_015942.1 KEGG: npu:Npun_F6102 hypothetical protein; hypothetical protein 1557013 11042559 Acife_1561 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784028.1 1556804 R 743299 CDS YP_004784029.1 344199703 11042560 1557214..1558428 1 NC_015942.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: cph:Cpha266_2270 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1558428 11042560 Acife_1563 Acidithiobacillus ferrivorans SS3 transposase IS204/IS1001/IS1096/IS1165 family protein YP_004784029.1 1557214 D 743299 CDS YP_004784030.1 344199704 11042562 1558781..1559020 1 NC_015942.1 KEGG: aav:Aave_2943 hypothetical protein; hypothetical protein 1559020 11042562 Acife_1565 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784030.1 1558781 D 743299 CDS YP_004784031.1 344199705 11042563 1559020..1559439 1 NC_015942.1 TIGRFAM: Protein of unknown function DUF132; PFAM: PilT protein, N-terminal; KEGG: aav:Aave_2942 PilT domain-containing protein; SMART: Nucleotide binding protein, PINc; hypothetical protein 1559439 11042563 Acife_1566 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784031.1 1559020 D 743299 CDS YP_004784032.1 344199706 11042565 complement(1559605..1560054) 1 NC_015942.1 KEGG: rpf:Rpic12D_0692 hypothetical protein; hypothetical protein 1560054 11042565 Acife_1568 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784032.1 1559605 R 743299 CDS YP_004784033.1 344199707 11044275 complement(1560054..1560515) 1 NC_015942.1 KEGG: bxe:Bxe_A1174 AbrB family transcriptional regulator; TIGRFAM: Transcription regulator AbrB; PFAM: Transcription regulator AbrB/SpoV, predicted; AbrB family transcriptional regulator 1560515 11044275 Acife_1569 Acidithiobacillus ferrivorans SS3 AbrB family transcriptional regulator YP_004784033.1 1560054 R 743299 CDS YP_004784034.1 344199708 11042566 1560806..1561057 1 NC_015942.1 PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: app:CAP2UW1_4523 transcriptional regulator, AbrB family; SpoVT/AbrB domain-containing protein 1561057 11042566 Acife_1570 Acidithiobacillus ferrivorans SS3 SpoVT/AbrB domain-containing protein YP_004784034.1 1560806 D 743299 CDS YP_004784035.1 344199709 11042567 1561054..1561449 1 NC_015942.1 KEGG: xcb:XC_2599 hypothetical protein; hypothetical protein 1561449 11042567 Acife_1571 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784035.1 1561054 D 743299 CDS YP_004784036.1 344199710 11044276 1561975..1563864 1 NC_015942.1 HAMAP: Chaperone protein htpG; PFAM: Heat shock protein Hsp90, C-terminal; ATP-binding region, ATPase-like; KEGG: afr:AFE_3158 heat shock protein HtpG; SMART: ATP-binding region, ATPase-like; chaperone protein htpG 1563864 11044276 Acife_1572 Acidithiobacillus ferrivorans SS3 chaperone protein htpG YP_004784036.1 1561975 D 743299 CDS YP_004784037.1 344199711 11042569 complement(1564446..1564805) 1 NC_015942.1 TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; KEGG: afr:AFE_1754 virulence-associated protein, putative; SMART: Helix-turn-helix type 3; XRE family transcriptional regulator 1564805 11042569 Acife_1574 Acidithiobacillus ferrivorans SS3 XRE family transcriptional regulator YP_004784037.1 1564446 R 743299 CDS YP_004784038.1 344199712 11044277 complement(1564822..1565103) 1 NC_015942.1 PFAM: Plasmid maintenance system killer; KEGG: neu:NE1109 hypothetical protein; plasmid maintenance system killer 1565103 11044277 Acife_1575 Acidithiobacillus ferrivorans SS3 plasmid maintenance system killer YP_004784038.1 1564822 R 743299 CDS YP_004784039.1 344199713 11042570 complement(1565176..1565430) 1 NC_015942.1 hypothetical protein 1565430 11042570 Acife_1576 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784039.1 1565176 R 743299 CDS YP_004784040.1 344199714 11042571 complement(1565646..1566518) 1 NC_015942.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: acl:ACL_0438 Fic-domain-containing protein; filamentation induced by cAMP protein Fic 1566518 11042571 Acife_1577 Acidithiobacillus ferrivorans SS3 filamentation induced by cAMP protein Fic YP_004784040.1 1565646 R 743299 CDS YP_004784041.1 344199715 11042572 complement(1566883..1568031) 1 NC_015942.1 PFAM: Filamentation induced by cAMP/death on curing, related; KEGG: vpe:Varpa_5326 filamentation induced by camp protein fic; filamentation induced by cAMP protein Fic 1568031 11042572 Acife_1578 Acidithiobacillus ferrivorans SS3 filamentation induced by cAMP protein Fic YP_004784041.1 1566883 R 743299 CDS YP_004784042.1 344199716 11042573 1568562..1572560 1 NC_015942.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; Twin-arginine translocation pathway, signal sequence; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; GAF; PAS fold-4; KEGG: afe:Lferr_2664 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 1572560 11042573 Acife_1579 Acidithiobacillus ferrivorans SS3 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_004784042.1 1568562 D 743299 CDS YP_004784043.1 344199717 11042575 complement(1573027..1573200) 1 NC_015942.1 PFAM: Proto-chlorophyllide reductase 57kDa subunit; KEGG: afr:AFE_0095 hypothetical protein; proto-chlorophyllide reductase 57 kD subunit 1573200 11042575 Acife_1581 Acidithiobacillus ferrivorans SS3 proto-chlorophyllide reductase 57 kD subunit YP_004784043.1 1573027 R 743299 CDS YP_004784044.1 344199718 11042576 1574032..1574985 1 NC_015942.1 PFAM: Type IV pilus assembly PilZ; type IV pilus assembly PilZ 1574985 11042576 Acife_1583 Acidithiobacillus ferrivorans SS3 type IV pilus assembly PilZ YP_004784044.1 1574032 D 743299 CDS YP_004784045.1 344199719 11042577 1574961..1575158 1 NC_015942.1 hypothetical protein 1575158 11042577 Acife_1584 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784045.1 1574961 D 743299 CDS YP_004784046.1 344199720 11042578 1575301..1576416 1 NC_015942.1 KEGG: tsa:AciPR4_1393 cellulose synthase operon protein YhjQ; hypothetical protein 1576416 11042578 Acife_1585 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784046.1 1575301 D 743299 CDS YP_004784047.1 344199721 11042579 1576484..1580857 1 NC_015942.1 KEGG: aca:ACP_0075 cellulose synthase I; TIGRFAM: Cellulose synthase catalytic subunit (UDP-forming); PFAM: Cellulose synthase BcsB, bacterial; Glycosyl transferase, family 2; Type IV pilus assembly PilZ; cellulose synthase catalytic subunit 1580857 11042579 Acife_1586 Acidithiobacillus ferrivorans SS3 cellulose synthase catalytic subunit YP_004784047.1 1576484 D 743299 CDS YP_004784048.1 344199722 11042580 1580854..1582026 1 NC_015942.1 PFAM: Glycoside hydrolase, family 8; KEGG: aca:ACP_0076 endo-1,4-D-glucanase; glycoside hydrolase family protein 1582026 11042580 Acife_1587 Acidithiobacillus ferrivorans SS3 glycoside hydrolase family protein YP_004784048.1 1580854 D 743299 CDS YP_004784049.1 344199723 11042581 1582005..1584386 1 NC_015942.1 PFAM: Tetratricopeptide TPR-1; Tetratricopeptide TPR-4; KEGG: tsa:AciPR4_1397 cellulose synthase operon C domain-containing protein; hypothetical protein 1584386 11042581 Acife_1588 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784049.1 1582005 D 743299 CDS YP_004784050.1 344199724 11042582 1584389..1586017 1 NC_015942.1 PFAM: Cellulose synthase operon C, C-terminal; KEGG: vpe:Varpa_3211 cellulose synthase operon c domain protein; cellulose synthase operon C domain-containing protein 1586017 11042582 Acife_1589 Acidithiobacillus ferrivorans SS3 cellulose synthase operon C domain-containing protein YP_004784050.1 1584389 D 743299 CDS YP_004784051.1 344199725 11042583 1586395..1587270 1 NC_015942.1 PFAM: Crotonase, core; KEGG: tgr:Tgr7_0083 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 1587270 11042583 Acife_1590 Acidithiobacillus ferrivorans SS3 enoyl-CoA hydratase/isomerase YP_004784051.1 1586395 D 743299 CDS YP_004784052.1 344199726 11044279 complement(1587302..1589878) 1 NC_015942.1 KEGG: tgr:Tgr7_0082 Hpt sensor hybrid histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; Signal transduction histidine kinase, phosphotransfer (Hpt) region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; Signal transduction response regulator, receiver region; multi-sensor hybrid histidine kinase 1589878 11044279 Acife_1591 Acidithiobacillus ferrivorans SS3 multi-sensor hybrid histidine kinase YP_004784052.1 1587302 R 743299 CDS YP_004784053.1 344199727 11042584 complement(1589920..1591089) 1 NC_015942.1 KEGG: tbd:Tbd_2670 metal dependent phosphohydrolase, HD region; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; Metal-dependent phosphohydrolase, HD region; response regulator receiver modulated metal dependent phosphohydrolase 1591089 11042584 Acife_1592 Acidithiobacillus ferrivorans SS3 response regulator receiver modulated metal dependent phosphohydrolase YP_004784053.1 1589920 R 743299 CDS YP_004784054.1 344199728 11044280 complement(1591372..1591536) 1 NC_015942.1 hypothetical protein 1591536 11044280 Acife_1593 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784054.1 1591372 R 743299 CDS YP_004784055.1 344199729 11042585 1591836..1594124 1 NC_015942.1 KEGG: amc:MADE_00787 cellulose synthase catalytic subunit; TIGRFAM: Cellulose synthase catalytic subunit (UDP-forming); PFAM: Glycosyl transferase, family 2; Type IV pilus assembly PilZ; cellulose synthase catalytic subunit 1594124 11042585 Acife_1594 Acidithiobacillus ferrivorans SS3 cellulose synthase catalytic subunit YP_004784055.1 1591836 D 743299 CDS YP_004784056.1 344199730 11042586 1594146..1596227 1 NC_015942.1 PFAM: Cellulose synthase BcsB, bacterial; KEGG: amc:MADE_00788 CelB protein; cellulose synthase BcsB 1596227 11042586 Acife_1595 Acidithiobacillus ferrivorans SS3 cellulose synthase BcsB YP_004784056.1 1594146 D 743299 CDS YP_004784057.1 344199731 11044281 1596224..1598410 1 NC_015942.1 KEGG: met:M446_0104 hypothetical protein; hypothetical protein 1598410 11044281 Acife_1596 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784057.1 1596224 D 743299 CDS YP_004784058.1 344199732 11042588 1599098..1600351 1 NC_015942.1 PFAM: Glycoside hydrolase, family 8; KEGG: aca:ACP_0076 endo-1,4-D-glucanase; glycoside hydrolase family protein 1600351 11042588 Acife_1598 Acidithiobacillus ferrivorans SS3 glycoside hydrolase family protein YP_004784058.1 1599098 D 743299 CDS YP_004784059.1 344199733 11044282 1600394..1601698 1 NC_015942.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate cyclase, predicted; KEGG: afr:AFE_1712 diguanylate cyclase, putative; SMART: Diguanylate cyclase, predicted; diguanylate cyclase 1601698 11044282 Acife_1599 Acidithiobacillus ferrivorans SS3 diguanylate cyclase YP_004784059.1 1600394 D 743299 CDS YP_004784060.1 344199734 11044283 1602480..1603253 1 NC_015942.1 PFAM: Protein of unknown function DUF481; KEGG: afr:AFE_2054 hypothetical protein; hypothetical protein 1603253 11044283 Acife_1601 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784060.1 1602480 D 743299 CDS YP_004784061.1 344199735 11042591 complement(1603298..1603723) 1 NC_015942.1 TIGRFAM: Nitrile oxidoreductase, NADPH-dependent, QueF; HAMAP: Nitrile oxidoreductase, NADPH-dependent, QueF; KEGG: afr:AFE_0752 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase; NADPH-dependent 7-cyano-7-deazaguanine reductase 1603723 11042591 Acife_1602 Acidithiobacillus ferrivorans SS3 NADPH-dependent 7-cyano-7-deazaguanine reductase YP_004784061.1 1603298 R 743299 CDS YP_004784062.1 344199736 11042592 1603785..1607237 1 NC_015942.1 KEGG: afe:Lferr_0900 chromosome segregation protein SMC; TIGRFAM: Chromosome segregation protein SMC; PFAM: RecF/RecN/SMC protein, N-terminal; chromosome segregation protein SMC 1607237 11042592 Acife_1603 Acidithiobacillus ferrivorans SS3 chromosome segregation protein SMC YP_004784062.1 1603785 D 743299 CDS YP_004784063.1 344199737 11044284 complement(1607252..1607947) 1 NC_015942.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IB, PSPase-like, bacterial; HAD-superfamily hydrolase, subfamily IB, PSPase-like; KEGG: afr:AFE_0756 HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase 1607947 11044284 Acife_1604 Acidithiobacillus ferrivorans SS3 HAD-superfamily hydrolase YP_004784063.1 1607252 R 743299 CDS YP_004784064.1 344199738 11042593 1608088..1610103 1 NC_015942.1 SMART: NAD-dependent DNA ligase, N-terminal; Helix-hairpin-helix DNA-binding motif, class 1; BRCT; TIGRFAM: NAD-dependent DNA ligase; KEGG: afr:AFE_0757 DNA ligase, NAD-dependent; HAMAP: DNA ligase; PFAM: NAD-dependent DNA ligase, adenylation; NAD-dependent DNA ligase, OB-fold; Zinc-finger, NAD-dependent DNA ligase C4-type; BRCT; DNA ligase 1610103 11042593 Acife_1605 Acidithiobacillus ferrivorans SS3 DNA ligase YP_004784064.1 1608088 D 743299 CDS YP_004784065.1 344199739 11042594 1610106..1610621 1 NC_015942.1 TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; HAMAP: ATPase, F1 complex, delta/epsilon subunit; KEGG: afr:AFE_0758 ATP synthase F1, epsilon subunit, putative; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; ATP synthase subunit epsilon 1610621 11042594 Acife_1606 Acidithiobacillus ferrivorans SS3 ATP synthase subunit epsilon YP_004784065.1 1610106 D 743299 CDS YP_004784066.1 344199740 11042595 complement(1610637..1611002) 1 NC_015942.1 PFAM: Protein of unknown function DUF202; KEGG: cno:NT01CX_0294 hypothetical protein; hypothetical protein 1611002 11042595 Acife_1607 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784066.1 1610637 R 743299 CDS YP_004784067.1 344199741 11042596 complement(1610999..1611316) 1 NC_015942.1 KEGG: hypothetical protein; hypothetical protein 1611316 11042596 Acife_1608 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784067.1 1610999 R 743299 CDS YP_004784068.1 344199742 11042597 complement(1611450..1611935) 1 NC_015942.1 KEGG: afr:AFE_1467 transcriptional regulator, Fur family; Fur family transcriptional regulator 1611935 11042597 Acife_1609 Acidithiobacillus ferrivorans SS3 Fur family transcriptional regulator YP_004784068.1 1611450 R 743299 CDS YP_004784069.1 344199743 11042598 1612053..1612532 1 NC_015942.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: afr:AFE_1468 antioxidant, AhpC/Tsa family; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 1612532 11042598 Acife_1610 Acidithiobacillus ferrivorans SS3 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_004784069.1 1612053 D 743299 CDS YP_004784070.1 344199744 11044285 1612529..1613938 1 NC_015942.1 KEGG: afr:AFE_1469 PhoH family protein; PFAM: PhoH-like protein; SMART: Nucleotide binding protein, PINc; PhoH family protein 1613938 11044285 Acife_1611 Acidithiobacillus ferrivorans SS3 PhoH family protein YP_004784070.1 1612529 D 743299 CDS YP_004784071.1 344199745 11042599 1614002..1615915 1 NC_015942.1 TIGRFAM: Arginine decarboxylase; HAMAP: Biosynthetic arginine decarboxylase; KEGG: afr:AFE_1471 arginine decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; Biosynthetic arginine decarboxylase 1615915 11042599 Acife_1612 Acidithiobacillus ferrivorans SS3 Biosynthetic arginine decarboxylase YP_004784071.1 1614002 D 743299 CDS YP_004784072.1 344199746 11044286 complement(1615880..1616308) 1 NC_015942.1 KEGG: afr:AFE_1470 hypothetical protein; hypothetical protein 1616308 11044286 Acife_1613 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784072.1 1615880 R 743299 CDS YP_004784073.1 344199747 11042600 complement(1616344..1617027) 1 NC_015942.1 PFAM: Fumarylacetoacetase, C-terminal-like; KEGG: afr:AFE_1472 fumarylacetoacetate hydrolase family protein; fumarylacetoacetate (FAA) hydrolase 1617027 11042600 Acife_1614 Acidithiobacillus ferrivorans SS3 fumarylacetoacetate (FAA) hydrolase YP_004784073.1 1616344 R 743299 CDS YP_004784074.1 344199748 11042601 complement(1617024..1617440) 1 NC_015942.1 KEGG: afr:AFE_1475 hypothetical protein; hypothetical protein 1617440 11042601 Acife_1615 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784074.1 1617024 R 743299 CDS YP_004784075.1 344199749 11044287 complement(1617449..1617943) 1 NC_015942.1 KEGG: afr:AFE_1476 hypothetical protein; hypothetical protein 1617943 11044287 Acife_1616 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784075.1 1617449 R 743299 CDS YP_004784076.1 344199750 11042602 complement(1617933..1618268) 1 NC_015942.1 PFAM: Sucraseferredoxin-like; KEGG: azo:azo3368 ferredoxin 2Fe-2S protein; Sucraseferredoxin family protein 1618268 11042602 Acife_1617 Acidithiobacillus ferrivorans SS3 Sucraseferredoxin family protein YP_004784076.1 1617933 R 743299 CDS YP_004784077.1 344199751 11044288 complement(1618282..1618569) 1 NC_015942.1 KEGG: afr:AFE_1477 ferredoxin-like protein; ferredoxin-like protein 1618569 11044288 Acife_1618 Acidithiobacillus ferrivorans SS3 ferredoxin-like protein YP_004784077.1 1618282 R 743299 CDS YP_004784078.1 344199752 11042603 complement(1618566..1619864) 1 NC_015942.1 PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; KEGG: afr:AFE_1478 FixC protein; fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein 1619864 11042603 Acife_1619 Acidithiobacillus ferrivorans SS3 fumarate reductase/succinate dehydrogenase flavoprotein domain-containing protein YP_004784078.1 1618566 R 743299 CDS YP_004784079.1 344199753 11042604 complement(1619881..1620975) 1 NC_015942.1 PFAM: Electron transfer flavoprotein, alpha subunit, C-terminal; Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; KEGG: afr:AFE_1479 electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha 1620975 11042604 Acife_1620 Acidithiobacillus ferrivorans SS3 electron transfer flavoprotein subunit alpha YP_004784079.1 1619881 R 743299 CDS YP_004784080.1 344199754 11042605 complement(1620995..1621837) 1 NC_015942.1 PFAM: Electron transfer flavoprotein, alpha/beta-subunit, N-terminal; KEGG: afr:AFE_1480 electron transfer flavoprotein, beta subunit; electron transfer flavoprotein alpha/beta-subunit 1621837 11042605 Acife_1621 Acidithiobacillus ferrivorans SS3 electron transfer flavoprotein alpha/beta-subunit YP_004784080.1 1620995 R 743299 CDS YP_004784081.1 344199755 11044289 complement(1622028..1623626) 1 NC_015942.1 PFAM: Amine oxidase; KEGG: mca:MCA2837 amine oxidase; amine oxidase 1623626 11044289 Acife_1622 Acidithiobacillus ferrivorans SS3 amine oxidase YP_004784081.1 1622028 R 743299 CDS YP_004784082.1 344199756 11042606 1623774..1623974 1 NC_015942.1 hypothetical protein 1623974 11042606 Acife_1623 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784082.1 1623774 D 743299 CDS YP_004784083.1 344199757 11042607 complement(1623941..1624864) 1 NC_015942.1 PFAM: Bacterial extracellular solute-binding, family 1; KEGG: afr:AFE_1498 ABC transporter, periplasmic substrate-binding protein, putative; family 1 extracellular solute-binding protein 1624864 11042607 Acife_1624 Acidithiobacillus ferrivorans SS3 family 1 extracellular solute-binding protein YP_004784083.1 1623941 R 743299 CDS YP_004784084.1 344199758 11042608 1625073..1626770 1 NC_015942.1 KEGG: afe:Lferr_1217 AAA ATPase central domain-containing protein; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; AAA ATPase central domain-containing protein 1626770 11042608 Acife_1625 Acidithiobacillus ferrivorans SS3 AAA ATPase central domain-containing protein YP_004784084.1 1625073 D 743299 CDS YP_004784085.1 344199759 11042609 1626814..1627128 1 NC_015942.1 KEGG: afr:AFE_1500 hypothetical protein; hypothetical protein 1627128 11042609 Acife_1626 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784085.1 1626814 D 743299 CDS YP_004784086.1 344199760 11044290 1627166..1627495 1 NC_015942.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: mca:MCA0225 Rieske 2Fe-2S family protein; Rieske (2Fe-2S) iron-sulfur domain-containing protein 1627495 11044290 Acife_1627 Acidithiobacillus ferrivorans SS3 Rieske (2Fe-2S) iron-sulfur domain-containing protein YP_004784086.1 1627166 D 743299 CDS YP_004784087.1 344199761 11042610 complement(1627522..1627755) 1 NC_015942.1 KEGG: azc:AZC_3432 hypothetical protein; hypothetical protein 1627755 11042610 Acife_1628 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784087.1 1627522 R 743299 CDS YP_004784088.1 344199762 11042611 complement(1627815..1628045) 1 NC_015942.1 KEGG: afr:AFE_1501 hypothetical protein; TIGRFAM: Regulatory protein, FmdB, putative; PFAM: Regulatory protein, FmdB, putative; FmdB family regulatory protein 1628045 11042611 Acife_1629 Acidithiobacillus ferrivorans SS3 FmdB family regulatory protein YP_004784088.1 1627815 R 743299 CDS YP_004784089.1 344199763 11042612 complement(1628114..1628896) 1 NC_015942.1 KEGG: afr:AFE_1502 ankyrin repeat protein/rhodanese-like domain protein; PFAM: Rhodanese-like; Ankyrin repeat; SMART: Rhodanese-like; Ankyrin repeat; rhodanese-like protein 1628896 11042612 Acife_1630 Acidithiobacillus ferrivorans SS3 rhodanese-like protein YP_004784089.1 1628114 R 743299 CDS YP_004784090.1 344199764 11042613 complement(1628868..1630508) 1 NC_015942.1 PFAM: Nitroreductase-like; KEGG: afr:AFE_1503 nitroreductase, putative; nitroreductase 1630508 11042613 Acife_1631 Acidithiobacillus ferrivorans SS3 nitroreductase YP_004784090.1 1628868 R 743299 CDS YP_004784091.1 344199765 11044291 complement(1630573..1630905) 1 NC_015942.1 KEGG: afr:AFE_1504 NifW protein, putative; HAMAP: Nitrogenase-stabilizing/protective protein nifW; PFAM: Nitrogen fixation protein NifW; nitrogenase-stabilizing/protective protein nifW 1630905 11044291 Acife_1632 Acidithiobacillus ferrivorans SS3 nitrogenase-stabilizing/protective protein nifW YP_004784091.1 1630573 R 743299 CDS YP_004784092.1 344199766 11042614 complement(1630910..1631719) 1 NC_015942.1 KEGG: afr:AFE_1505 serine O-acetyltransferase; TIGRFAM: Serine O-acetyltransferase; PFAM: Bacterial transferase hexapeptide repeat; serine O-acetyltransferase 1631719 11042614 Acife_1633 Acidithiobacillus ferrivorans SS3 serine O-acetyltransferase YP_004784092.1 1630910 R 743299 CDS YP_004784093.1 344199767 11042615 complement(1631735..1632895) 1 NC_015942.1 KEGG: afr:AFE_1506 homocitrate synthase; TIGRFAM: Homocitrate synthase NifV-type; PFAM: Pyruvate carboxyltransferase; homocitrate synthase 1632895 11042615 Acife_1634 Acidithiobacillus ferrivorans SS3 homocitrate synthase YP_004784093.1 1631735 R 743299 CDS YP_004784094.1 344199768 11042616 complement(1632888..1634096) 1 NC_015942.1 KEGG: afr:AFE_1507 cysteine desulfurase; TIGRFAM: Cysteine desulfurase, NifS, bacterial/archaeal; PFAM: Aminotransferase, class V/Cysteine desulfurase; cysteine desulfurase NifS 1634096 11042616 Acife_1635 Acidithiobacillus ferrivorans SS3 cysteine desulfurase NifS YP_004784094.1 1632888 R 743299 CDS YP_004784095.1 344199769 11042617 complement(1634099..1634974) 1 NC_015942.1 KEGG: afr:AFE_1508 nitrogen fixation protein NifU; TIGRFAM: NIF system FeS cluster assembly, NifU; PFAM: NIF system FeS cluster assembly, NifU, N-terminal; BFD-like [2Fe-2S]-binding region; NIF system FeS cluster assembly, NifU, C-terminal; Fe-S cluster assembly protein NifU 1634974 11042617 Acife_1636 Acidithiobacillus ferrivorans SS3 Fe-S cluster assembly protein NifU YP_004784095.1 1634099 R 743299 CDS YP_004784096.1 344199770 11042618 complement(1634979..1635347) 1 NC_015942.1 KEGG: afr:AFE_1509 iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis; iron-sulfur cluster assembly accessory protein 1635347 11042618 Acife_1637 Acidithiobacillus ferrivorans SS3 iron-sulfur cluster assembly accessory protein YP_004784096.1 1634979 R 743299 CDS YP_004784097.1 344199771 11042619 complement(1635605..1636198) 1 NC_015942.1 KEGG: afr:AFE_1510 hypothetical protein; hypothetical protein 1636198 11042619 Acife_1638 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784097.1 1635605 R 743299 CDS YP_004784098.1 344199772 11044292 complement(1636229..1636882) 1 NC_015942.1 PFAM: NifQ; KEGG: afr:AFE_1511 nitrogen fixation protein NifQ; NifQ family protein 1636882 11044292 Acife_1639 Acidithiobacillus ferrivorans SS3 NifQ family protein YP_004784098.1 1636229 R 743299 CDS YP_004784099.1 344199773 11042620 complement(1636913..1637221) 1 NC_015942.1 KEGG: afr:AFE_1512 ferredoxin; TIGRFAM: Ferredoxin III 4[4Fe-4S], nif-specific; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; ferredoxin III, nif-specific 1637221 11042620 Acife_1640 Acidithiobacillus ferrivorans SS3 ferredoxin III, nif-specific YP_004784099.1 1636913 R 743299 CDS YP_004784100.1 344199774 11042621 complement(1637226..1637489) 1 NC_015942.1 PFAM: Uncharacterised protein family UPF0437; KEGG: afr:AFE_1513 hypothetical protein; hypothetical protein 1637489 11042621 Acife_1641 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784100.1 1637226 R 743299 CDS YP_004784101.1 344199775 11042622 complement(1637547..1638011) 1 NC_015942.1 KEGG: afr:AFE_1514 hypothetical protein; TIGRFAM: Uncharacterised protein family UPF0460; PFAM: Uncharacterised protein family UPF0460; nitrogen fixation protein 1638011 11042622 Acife_1642 Acidithiobacillus ferrivorans SS3 nitrogen fixation protein YP_004784101.1 1637547 R 743299 CDS YP_004784102.1 344199776 11042623 complement(1638004..1638420) 1 NC_015942.1 KEGG: afr:AFE_1515 nitrogen fixation protein NifX; TIGRFAM: Nitrogen fixation protein NifX; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; nitrogen fixation protein NifX 1638420 11042623 Acife_1643 Acidithiobacillus ferrivorans SS3 nitrogen fixation protein NifX YP_004784102.1 1638004 R 743299 CDS YP_004784103.1 344199777 11044293 complement(1638473..1639834) 1 NC_015942.1 KEGG: afr:AFE_1516 nitrogenase molybdenum-cofactor biosynthesis protein NifN; TIGRFAM: Nitrogenase molybdenum-iron cofactor biosynthesis protein; PFAM: Nitrogenase/oxidoreductase, component 1; nitrogenase molybdenum-iron cofactor biosynthesis protein NifN 1639834 11044293 Acife_1644 Acidithiobacillus ferrivorans SS3 nitrogenase molybdenum-iron cofactor biosynthesis protein NifN YP_004784103.1 1638473 R 743299 CDS YP_004784104.1 344199778 11042624 complement(1639831..1641222) 1 NC_015942.1 KEGG: afr:AFE_1517 nitrogenase molybdenum-cofactor biosynthesis protein NifE; TIGRFAM: Nitrogenase MoFe cofactor biosynthesis protein NifE; PFAM: Nitrogenase/oxidoreductase, component 1; nitrogenase MoFe cofactor biosynthesis protein NifE 1641222 11042624 Acife_1645 Acidithiobacillus ferrivorans SS3 nitrogenase MoFe cofactor biosynthesis protein NifE YP_004784104.1 1639831 R 743299 CDS YP_004784105.1 344199779 11042625 complement(1641241..1641585) 1 NC_015942.1 PFAM: Ferredoxin; KEGG: afr:AFE_1518 ferredoxin, putative; ferredoxin 1641585 11042625 Acife_1646 Acidithiobacillus ferrivorans SS3 ferredoxin YP_004784105.1 1641241 R 743299 CDS YP_004784106.1 344199780 11042626 complement(1641610..1641954) 1 NC_015942.1 PFAM: Ferredoxin; KEGG: afr:AFE_1519 ferredoxin; ferredoxin 1641954 11042626 Acife_1647 Acidithiobacillus ferrivorans SS3 ferredoxin YP_004784106.1 1641610 R 743299 CDS YP_004784107.1 344199781 11042627 complement(1642022..1643581) 1 NC_015942.1 KEGG: afr:AFE_1520 nitrogenase molybdenum-iron protein, beta subunit; TIGRFAM: Nitrogenase molybdenum-iron protein beta chain; PFAM: Nitrogenase/oxidoreductase, component 1; nitrogenase molybdenum-iron protein beta chain 1643581 11042627 Acife_1648 Acidithiobacillus ferrivorans SS3 nitrogenase molybdenum-iron protein beta chain YP_004784107.1 1642022 R 743299 CDS YP_004784108.1 344199782 11044294 complement(1643660..1645135) 1 NC_015942.1 KEGG: afr:AFE_1521 nitrogenase molybdenum-iron protein, alpha subunit; TIGRFAM: Nitrogenase molybdenum-iron protein alpha chain; Nitrogenase component 1, alpha chain; PFAM: Nitrogenase/oxidoreductase, component 1; nitrogenase molybdenum-iron protein alpha chain 1645135 11044294 Acife_1649 Acidithiobacillus ferrivorans SS3 nitrogenase molybdenum-iron protein alpha chain YP_004784108.1 1643660 R 743299 CDS YP_004784109.1 344199783 11042628 complement(1645200..1646087) 1 NC_015942.1 TIGRFAM: Nitrogenase iron protein NifH; HAMAP: Nitrogenase iron protein NifH; KEGG: afr:AFE_1522 nitrogenase reductase; PFAM: Nitrogenase iron protein, subunit NifH/Protochlorophyllide reductase, subunit ChlL; nitrogenase iron protein 1646087 11042628 Acife_1650 Acidithiobacillus ferrivorans SS3 nitrogenase iron protein YP_004784109.1 1645200 R 743299 CDS YP_004784110.1 344199784 11042629 1646548..1646934 1 NC_015942.1 KEGG: afr:AFE_1523 response regulator; response regulator 1646934 11042629 Acife_1651 Acidithiobacillus ferrivorans SS3 response regulator YP_004784110.1 1646548 D 743299 CDS YP_004784111.1 344199785 11044295 1646952..1647779 1 NC_015942.1 PFAM: Dinitrogenase reductase ADP-ribosyltransferase; KEGG: afr:AFE_1524 NAD(+)--dinitrogen-reductase ADP-D-ribosyltransferase; Dinitrogenase reductase ADP-ribosyltransferase 1647779 11044295 Acife_1652 Acidithiobacillus ferrivorans SS3 Dinitrogenase reductase ADP-ribosyltransferase YP_004784111.1 1646952 D 743299 CDS YP_004784112.1 344199786 11042630 1647789..1649177 1 NC_015942.1 KEGG: afr:AFE_1525 ADP-ribosyl-[dinitrogen reductase] hydrolase; TIGRFAM: ADP-ribosyl-dinitrogen reductase hydrolase; Nitrogenase-associated protein; PFAM: ADP-ribosylation/Crystallin J1; Arsenate reductase-like; ADP-ribosyl-(dinitrogen reductase) hydrolase 1649177 11042630 Acife_1653 Acidithiobacillus ferrivorans SS3 ADP-ribosyl-(dinitrogen reductase) hydrolase YP_004784112.1 1647789 D 743299 CDS YP_004784113.1 344199787 11042631 1649203..1650840 1 NC_015942.1 TIGRFAM: Nif-specific regulatory protein; PFAM: RNA polymerase sigma factor 54, interaction; GAF; Helix-turn-helix, Fis-type; KEGG: afr:AFE_1527 Nif-specific regulatory protein; SMART: GAF; ATPase, AAA+ type, core; Fis Family transcriptional regulator NifA 1650840 11042631 Acife_1654 Acidithiobacillus ferrivorans SS3 Fis Family transcriptional regulator NifA YP_004784113.1 1649203 D 743299 CDS YP_004784114.1 344199788 11042632 1651104..1652672 1 NC_015942.1 KEGG: afe:Lferr_1245 nitrogenase cofactor biosynthesis protein NifB; TIGRFAM: Nitrogenase cofactor biosynthesis protein NifB; PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis; Radical SAM; nitrogenase cofactor biosynthesis protein NifB 1652672 11042632 Acife_1655 Acidithiobacillus ferrivorans SS3 nitrogenase cofactor biosynthesis protein NifB YP_004784114.1 1651104 D 743299 CDS YP_004784115.1 344199789 11044296 1652723..1652941 1 NC_015942.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: afr:AFE_1530 ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1652941 11044296 Acife_1656 Acidithiobacillus ferrivorans SS3 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004784115.1 1652723 D 743299 CDS YP_004784116.1 344199790 11042633 1652951..1653286 1 NC_015942.1 KEGG: afr:AFE_1531 iron-sulfur cluster assembly accessory protein; TIGRFAM: FeS cluster insertion; PFAM: FeS cluster biogenesis; iron-sulfur cluster assembly accessory protein 1653286 11042633 Acife_1657 Acidithiobacillus ferrivorans SS3 iron-sulfur cluster assembly accessory protein YP_004784116.1 1652951 D 743299 CDS YP_004784117.1 344199791 11042634 1653327..1653557 1 NC_015942.1 KEGG: afr:AFE_1532 hypothetical protein; hypothetical protein 1653557 11042634 Acife_1658 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784117.1 1653327 D 743299 CDS YP_004784118.1 344199792 11042635 1653554..1654066 1 NC_015942.1 KEGG: afr:AFE_1533 hypothetical protein; hypothetical protein 1654066 11042635 Acife_1659 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784118.1 1653554 D 743299 CDS YP_004784119.1 344199793 11042636 1654059..1654850 1 NC_015942.1 PFAM: LRV FeS4 cluster; Leucine rich repeat variant; KEGG: afr:AFE_1534 leucine rich repeat protein; LRV FeS4 cluster domain-containing protein 1654850 11042636 Acife_1660 Acidithiobacillus ferrivorans SS3 LRV FeS4 cluster domain-containing protein YP_004784119.1 1654059 D 743299 CDS YP_004784120.1 344199794 11044297 1654838..1655140 1 NC_015942.1 PFAM: NifZ; KEGG: afe:Lferr_1251 NifZ family protein; NifZ family protein 1655140 11044297 Acife_1661 Acidithiobacillus ferrivorans SS3 NifZ family protein YP_004784120.1 1654838 D 743299 CDS YP_004784121.1 344199795 11042637 1655137..1655391 1 NC_015942.1 PFAM: NifZ; KEGG: afe:Lferr_1252 NifZ family protein; NifZ family protein 1655391 11042637 Acife_1662 Acidithiobacillus ferrivorans SS3 NifZ family protein YP_004784121.1 1655137 D 743299 CDS YP_004784122.1 344199796 11042638 1655388..1656572 1 NC_015942.1 PFAM: Aminotransferase, class V/Cysteine desulfurase; KEGG: afr:AFE_1537 cysteine desulfurase; class V aminotransferase 1656572 11042638 Acife_1663 Acidithiobacillus ferrivorans SS3 class V aminotransferase YP_004784122.1 1655388 D 743299 CDS YP_004784123.1 344199797 11044298 1656585..1656794 1 NC_015942.1 KEGG: afr:AFE_1538 nitrogen fixation protein, putative; TIGRFAM: NifT/FixU; PFAM: NifT/FixU; nitrogen fixation protein FixT 1656794 11044298 Acife_1664 Acidithiobacillus ferrivorans SS3 nitrogen fixation protein FixT YP_004784123.1 1656585 D 743299 CDS YP_004784124.1 344199798 11042639 1656799..1657071 1 NC_015942.1 KEGG: afr:AFE_1539 hypothetical protein; hypothetical protein 1657071 11042639 Acife_1665 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784124.1 1656799 D 743299 CDS YP_004784125.1 344199799 11044299 1657068..1658210 1 NC_015942.1 PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; KEGG: afr:AFE_1540 aminotransferase, DegT/DnrJ/EryC1/StrS family; DegT/DnrJ/EryC1/StrS aminotransferase 1658210 11044299 Acife_1666 Acidithiobacillus ferrivorans SS3 DegT/DnrJ/EryC1/StrS aminotransferase YP_004784125.1 1657068 D 743299 CDS YP_004784126.1 344199800 11042640 1658252..1658557 1 NC_015942.1 PFAM: Ferredoxin; KEGG: afr:AFE_1541 ferredoxin, putative; ferredoxin 1658557 11042640 Acife_1667 Acidithiobacillus ferrivorans SS3 ferredoxin YP_004784126.1 1658252 D 743299 CDS YP_004784127.1 344199801 11042641 1658568..1658792 1 NC_015942.1 KEGG: afr:AFE_1542 hypothetical protein; hypothetical protein 1658792 11042641 Acife_1668 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784127.1 1658568 D 743299 CDS YP_004784128.1 344199802 11042642 1658805..1659632 1 NC_015942.1 KEGG: afr:AFE_1543 hypothetical protein; hypothetical protein 1659632 11042642 Acife_1669 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784128.1 1658805 D 743299 CDS YP_004784129.1 344199803 11042643 1659649..1660098 1 NC_015942.1 KEGG: afr:AFE_3240 Rrf2 family protein; TIGRFAM: Transcriptional regulator, Rrf2; PFAM: Transcriptional regulator, Rrf2; BadM/Rrf2 family transcriptional regulator 1660098 11042643 Acife_1670 Acidithiobacillus ferrivorans SS3 BadM/Rrf2 family transcriptional regulator YP_004784129.1 1659649 D 743299 CDS YP_004784130.1 344199804 11042644 complement(1660151..1661005) 1 NC_015942.1 KEGG: afe:Lferr_1260 ModD protein; TIGRFAM: Putative molybdenum utilization protein ModD; PFAM: Quinolinate phosphoribosyl transferase; modD protein 1661005 11042644 Acife_1671 Acidithiobacillus ferrivorans SS3 modD protein YP_004784130.1 1660151 R 743299 CDS YP_004784131.1 344199805 11042645 complement(1661030..1662496) 1 NC_015942.1 PFAM: Aldehyde dehydrogenase; KEGG: afr:AFE_1546 succinate-semialdehyde dehydrogenase, putative; aldehyde dehydrogenase 1662496 11042645 Acife_1672 Acidithiobacillus ferrivorans SS3 aldehyde dehydrogenase YP_004784131.1 1661030 R 743299 CDS YP_004784132.1 344199806 11044300 1662689..1663078 1 NC_015942.1 PFAM: Globin, truncated bacterial-like; KEGG: afr:AFE_1548 heme-binding protein, putative; globin 1663078 11044300 Acife_1673 Acidithiobacillus ferrivorans SS3 globin YP_004784132.1 1662689 D 743299 CDS YP_004784133.1 344199807 11042646 complement(1663075..1664496) 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_1547 hypothetical protein; major facilitator superfamily protein 1664496 11042646 Acife_1674 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004784133.1 1663075 R 743299 CDS YP_004784134.1 344199808 11042647 1664713..1665282 1 NC_015942.1 PFAM: Mechanosensitive ion channel MscS; KEGG: afr:AFE_1549 hypothetical protein; mechanosensitive ion channel MscS 1665282 11042647 Acife_1675 Acidithiobacillus ferrivorans SS3 mechanosensitive ion channel MscS YP_004784134.1 1664713 D 743299 CDS YP_004784135.1 344199809 11044301 1665279..1666181 1 NC_015942.1 PFAM: Carbohydrate/purine kinase; KEGG: afr:AFE_1550 carbohydrate kinase, PfkB family; PfkB domain-containing protein 1666181 11044301 Acife_1676 Acidithiobacillus ferrivorans SS3 PfkB domain-containing protein YP_004784135.1 1665279 D 743299 CDS YP_004784136.1 344199810 11042648 1666183..1668315 1 NC_015942.1 TIGRFAM: Sucrose-phosphate synthase, glycosyltransferase region; HAD-superfamily hydrolase, subfamily IIB; Sucrose phosphate synthase, sucrose phosphatase-like region; KEGG: afr:AFE_1551 sucrose phosphate synthase; PFAM: Sucrose-6F-phosphate phosphohydrolase, plant/cyanobacteria; Glycosyl transferase, group 1; sucrose-phosphate synthase 1668315 11042648 Acife_1677 Acidithiobacillus ferrivorans SS3 sucrose-phosphate synthase YP_004784136.1 1666183 D 743299 CDS YP_004784137.1 344199811 11044302 1668320..1670701 1 NC_015942.1 PFAM: Sucrose synthase; Glycosyl transferase, group 1; KEGG: afr:AFE_1552 sucrose synthase, putative; sucrose synthase 1670701 11044302 Acife_1678 Acidithiobacillus ferrivorans SS3 sucrose synthase YP_004784137.1 1668320 D 743299 CDS YP_004784138.1 344199812 11042649 complement(1670696..1671202) 1 NC_015942.1 PFAM: RES; KEGG: acm:AciX9_3442 RES domain protein; RES domain-containing protein 1671202 11042649 Acife_1679 Acidithiobacillus ferrivorans SS3 RES domain-containing protein YP_004784138.1 1670696 R 743299 CDS YP_004784139.1 344199813 11042650 complement(1671166..1671606) 1 NC_015942.1 KEGG: acm:AciX9_3443 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02293; PFAM: Conserved hypothetical protein CHP02293; hypothetical protein 1671606 11042650 Acife_1680 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784139.1 1671166 R 743299 CDS YP_004784140.1 344199814 11042651 1671769..1673247 1 NC_015942.1 KEGG: afr:AFE_2799 transcriptional regulator, Ada family/DNA-3-methyladenine glycosylase II; PFAM: AlkA, N-terminal; Ada DNA repair, metal-binding; Helix-turn-helix, AraC type; HhH-GPD domain; SMART: Helix-turn-helix, AraC domain; HhH-GPD domain; AraC family transcriptional regulator 1673247 11042651 Acife_1681 Acidithiobacillus ferrivorans SS3 AraC family transcriptional regulator YP_004784140.1 1671769 D 743299 CDS YP_004784141.1 344199815 11042652 complement(1673244..1673768) 1 NC_015942.1 KEGG: afr:AFE_1553 methylated-DNA--protein-cysteine methyltransferase; TIGRFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; PFAM: Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding; methylated-DNA/protein-cysteine methyltransferase 1673768 11042652 Acife_1682 Acidithiobacillus ferrivorans SS3 methylated-DNA/protein-cysteine methyltransferase YP_004784141.1 1673244 R 743299 CDS YP_004784142.1 344199816 11042653 1674039..1674272 1 NC_015942.1 KEGG: rlg:Rleg_5863 hypothetical protein; hypothetical protein 1674272 11042653 Acife_1683 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784142.1 1674039 D 743299 CDS YP_004784143.1 344199817 11044303 1674272..1674700 1 NC_015942.1 TIGRFAM: Conserved hyprothetical protein CHP00028; KEGG: bvi:Bcep1808_6071 PilT domain-containing protein; PIN domain-containing protein family protein 1674700 11044303 Acife_1684 Acidithiobacillus ferrivorans SS3 PIN domain-containing protein family protein YP_004784143.1 1674272 D 743299 CDS YP_004784144.1 344199818 11042654 complement(1674984..1675469) 1 NC_015942.1 KEGG: afr:AFE_1990 transcriptional regulator, AsnC family; PFAM: Transcription regulator, AsnC-type, C-terminal; SMART: Transcription regulator, AsnC-type; AsnC family transcriptional regulator 1675469 11042654 Acife_1685 Acidithiobacillus ferrivorans SS3 AsnC family transcriptional regulator YP_004784144.1 1674984 R 743299 CDS YP_004784145.1 344199819 11044304 1675611..1677314 1 NC_015942.1 PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; KEGG: afr:AFE_1989 2-isopropylmalate synthase; pyruvate carboxyltransferase 1677314 11044304 Acife_1686 Acidithiobacillus ferrivorans SS3 pyruvate carboxyltransferase YP_004784145.1 1675611 D 743299 CDS YP_004784146.1 344199820 11042655 complement(1677318..1678139) 1 NC_015942.1 KEGG: afe:Lferr_0177 hypothetical protein; hypothetical protein 1678139 11042655 Acife_1687 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784146.1 1677318 R 743299 CDS YP_004784147.1 344199821 11042656 complement(1678361..1679188) 1 NC_015942.1 manually curated; hypothetical protein 1679188 11042656 Acife_1688 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784147.1 1678361 R 743299 CDS YP_004784148.1 344199822 11044305 complement(1679196..1679396) 1 NC_015942.1 hypothetical protein 1679396 11044305 Acife_1689 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784148.1 1679196 R 743299 CDS YP_004784149.1 344199823 11042657 complement(1679467..1681950) 1 NC_015942.1 KEGG: afr:AFE_1988 cation-transporting P-type ATPase, putative; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; ATPase, P-type cation-transporter, C-terminal; P-type HAD superfamily ATPase 1681950 11042657 Acife_1690 Acidithiobacillus ferrivorans SS3 P-type HAD superfamily ATPase YP_004784149.1 1679467 R 743299 CDS YP_004784150.1 344199824 11044306 complement(1681982..1682749) 1 NC_015942.1 TIGRFAM: UDP-2,3-diacylglucosamine hydrolase; HAMAP: UDP-2,3-diacylglucosamine hydrolase; KEGG: afr:AFE_1987 UDP-2,3-diacylglucosamine hydrolase; PFAM: Metallophosphoesterase; UDP-2,3-diacylglucosamine hydrolase 1682749 11044306 Acife_1691 Acidithiobacillus ferrivorans SS3 UDP-2,3-diacylglucosamine hydrolase YP_004784150.1 1681982 R 743299 CDS YP_004784151.1 344199825 11042658 complement(1682760..1683272) 1 NC_015942.1 PFAM: Peptidyl-prolyl cis-trans isomerase, cyclophilin-type; KEGG: afr:AFE_1986 peptidyl-prolyl cis-trans isomerase B; cyclophilin type peptidyl-prolyl cis-trans isomerase 1683272 11042658 Acife_1692 Acidithiobacillus ferrivorans SS3 cyclophilin type peptidyl-prolyl cis-trans isomerase YP_004784151.1 1682760 R 743299 CDS YP_004784152.1 344199826 11042659 complement(1683460..1685079) 1 NC_015942.1 PFAM: Amino acid permease-associated region; KEGG: afr:AFE_1782 amino acid permease family protein; amino acid permease-associated protein 1685079 11042659 Acife_1693 Acidithiobacillus ferrivorans SS3 amino acid permease-associated protein YP_004784152.1 1683460 R 743299 CDS YP_004784153.1 344199827 11042660 1685780..1686235 1 NC_015942.1 KEGG: afr:AFE_1982 hypothetical protein; hypothetical protein 1686235 11042660 Acife_1694 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784153.1 1685780 D 743299 CDS YP_004784154.1 344199828 11042661 complement(1686362..1687702) 1 NC_015942.1 TIGRFAM: Exonuclease VII, large subunit; HAMAP: Exodeoxyribonuclease 7 large subunit; KEGG: afr:AFE_1980 exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit, C-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; exodeoxyribonuclease 7 large subunit 1687702 11042661 Acife_1695 Acidithiobacillus ferrivorans SS3 exodeoxyribonuclease 7 large subunit YP_004784154.1 1686362 R 743299 CDS YP_004784155.1 344199829 11044307 1687862..1688236 1 NC_015942.1 KEGG: afr:AFE_1979 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; thioredoxin 1688236 11044307 Acife_1696 Acidithiobacillus ferrivorans SS3 thioredoxin YP_004784155.1 1687862 D 743299 CDS YP_004784156.1 344199830 11042662 complement(1688324..1689154) 1 NC_015942.1 TIGRFAM: TonB, C-terminal; KEGG: afr:AFE_1978 TonB family protein; TonB family protein 1689154 11042662 Acife_1697 Acidithiobacillus ferrivorans SS3 TonB family protein YP_004784156.1 1688324 R 743299 CDS YP_004784157.1 344199831 11044308 complement(1689269..1690486) 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_1977 fosmidomycin resistance protein, putative; major facilitator superfamily protein 1690486 11044308 Acife_1698 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004784157.1 1689269 R 743299 CDS YP_004784158.1 344199832 11042663 1690617..1690865 1 NC_015942.1 TIGRFAM: Exonuclease VII, small subunit; HAMAP: Exonuclease VII, small subunit; KEGG: afr:AFE_1976 exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; exodeoxyribonuclease 7 small subunit 1690865 11042663 Acife_1699 Acidithiobacillus ferrivorans SS3 exodeoxyribonuclease 7 small subunit YP_004784158.1 1690617 D 743299 CDS YP_004784159.1 344199833 11042664 1690862..1691782 1 NC_015942.1 PFAM: Polyprenyl synthetase; KEGG: afr:AFE_1975 geranyltranstransferase; polyprenyl synthetase 1691782 11042664 Acife_1700 Acidithiobacillus ferrivorans SS3 polyprenyl synthetase YP_004784159.1 1690862 D 743299 CDS YP_004784160.1 344199834 11044309 1691779..1693653 1 NC_015942.1 TIGRFAM: Deoxyxylulose-5-phosphate synthase; HAMAP: Deoxyxylulose-5-phosphate synthase; KEGG: afr:AFE_1974 1-deoxy-D-xylulose-5-phosphate synthase; PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; 1-deoxy-D-xylulose-5-phosphate synthase 1693653 11044309 Acife_1701 Acidithiobacillus ferrivorans SS3 1-deoxy-D-xylulose-5-phosphate synthase YP_004784160.1 1691779 D 743299 CDS YP_004784161.1 344199835 11042665 1693696..1694490 1 NC_015942.1 PFAM: Protein of unknown function DUF198; KEGG: afr:AFE_1973 conserved hypothetical protein TIGR00294; hypothetical protein 1694490 11042665 Acife_1702 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784161.1 1693696 D 743299 CDS YP_004784162.1 344199836 11044310 1694494..1695585 1 NC_015942.1 KEGG: afr:AFE_1972 chorismate synthase; TIGRFAM: Chorismate synthase; PFAM: Chorismate synthase; chorismate synthase 1695585 11044310 Acife_1703 Acidithiobacillus ferrivorans SS3 chorismate synthase YP_004784162.1 1694494 D 743299 CDS YP_004784163.1 344199837 11042666 1695589..1696752 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_1971 transporter, putative; major facilitator superfamily protein 1696752 11042666 Acife_1704 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004784163.1 1695589 D 743299 CDS YP_004784164.1 344199838 11042667 1696793..1699393 1 NC_015942.1 TIGRFAM: Chaperonin ClpB; PFAM: ATPase associated with various cellular activities, AAA-2; Clp, N-terminal; ATPase, AAA-type, core; Clp ATPase, C-terminal; KEGG: afr:AFE_1970 ClpB protein; SMART: ATPase, AAA+ type, core; ATP-dependent chaperone ClpB 1699393 11042667 Acife_1705 Acidithiobacillus ferrivorans SS3 ATP-dependent chaperone ClpB YP_004784164.1 1696793 D 743299 CDS YP_004784165.1 344199839 11042668 complement(1699401..1700582) 1 NC_015942.1 PFAM: Glycosyl transferase, group 1; KEGG: afr:AFE_1427 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 1700582 11042668 Acife_1706 Acidithiobacillus ferrivorans SS3 group 1 glycosyl transferase YP_004784165.1 1699401 R 743299 CDS YP_004784166.1 344199840 11042669 complement(1700699..1702666) 1 NC_015942.1 TIGRFAM: Acetate--CoA ligase; HAMAP: Acetyl-coenzyme A synthetase; KEGG: afr:AFE_1969 acetyl-CoA synthetase; PFAM: AMP-dependent synthetase/ligase; acetyl-coenzyme A synthetase 1702666 11042669 Acife_1707 Acidithiobacillus ferrivorans SS3 acetyl-coenzyme A synthetase YP_004784166.1 1700699 R 743299 CDS YP_004784167.1 344199841 11044311 complement(1702763..1704748) 1 NC_015942.1 PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; Regulator of K+ conductance, C-terminal; KEGG: afr:AFE_1968 potassium-efflux system protein; sodium/hydrogen exchanger 1704748 11044311 Acife_1708 Acidithiobacillus ferrivorans SS3 sodium/hydrogen exchanger YP_004784167.1 1702763 R 743299 CDS YP_004784168.1 344199842 11042670 1704906..1705895 1 NC_015942.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; HAMAP: ADP-L-glycero-D-manno-heptose-6-epimerase; KEGG: afr:AFE_1967 ADP-L-glycero-D-mannoheptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; ADP-L-glycero-D-manno-heptose-6-epimerase 1705895 11042670 Acife_1709 Acidithiobacillus ferrivorans SS3 ADP-L-glycero-D-manno-heptose-6-epimerase YP_004784168.1 1704906 D 743299 CDS YP_004784169.1 344199843 11042671 1705895..1706896 1 NC_015942.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: afr:AFE_1966 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 1706896 11042671 Acife_1710 Acidithiobacillus ferrivorans SS3 NAD-dependent epimerase/dehydratase YP_004784169.1 1705895 D 743299 CDS YP_004784170.1 344199844 11044312 1706889..1707308 1 NC_015942.1 KEGG: afr:AFE_1965 hypothetical protein; hypothetical protein 1707308 11044312 Acife_1711 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784170.1 1706889 D 743299 CDS YP_004784171.1 344199845 11042672 complement(1707317..1708438) 1 NC_015942.1 PFAM: Fatty acid desaturase, type 1; KEGG: afr:AFE_1964 fatty acid desaturase; fatty acid desaturase 1708438 11042672 Acife_1712 Acidithiobacillus ferrivorans SS3 fatty acid desaturase YP_004784171.1 1707317 R 743299 CDS YP_004784172.1 344199846 11042673 complement(1708549..1709265) 1 NC_015942.1 PFAM: Protein of unknown function DUF125, transmembrane; KEGG: afr:AFE_0153 integral membrane protein; hypothetical protein 1709265 11042673 Acife_1713 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784172.1 1708549 R 743299 CDS YP_004784173.1 344199847 11042674 complement(1709282..1709902) 1 NC_015942.1 KEGG: afr:AFE_2246 DsbG domain protein; hypothetical protein 1709902 11042674 Acife_1714 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784173.1 1709282 R 743299 CDS YP_004784174.1 344199848 11042675 1710322..1710567 1 NC_015942.1 hypothetical protein 1710567 11042675 Acife_1715 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784174.1 1710322 D 743299 CDS YP_004784175.1 344199849 11042676 1711026..1711505 1 NC_015942.1 manually curated; hypothetical protein 1711505 11042676 Acife_1717 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784175.1 1711026 D 743299 CDS YP_004784176.1 344199850 11042677 1711936..1712505 1 NC_015942.1 KEGG: afr:AFE_3146 rusticyanin; TIGRFAM: Rusticyanin; PFAM: Blue (type 1) copper domain; rusticyanin 1712505 11042677 Acife_1718 Acidithiobacillus ferrivorans SS3 rusticyanin YP_004784176.1 1711936 D 743299 CDS YP_004784177.1 344199851 11042678 1712607..1712939 1 NC_015942.1 manually curated; KEGG: afr:AFE_0803 hypothetical protein; hypothetical protein 1712939 11042678 Acife_1719 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784177.1 1712607 D 743299 CDS YP_004784178.1 344199852 11042679 1712945..1714144 1 NC_015942.1 KEGG: afr:AFE_2654 DNA polymerase IV; HAMAP: DNA polymerase IV; PFAM: DNA-repair protein, UmuC-like; DNA polymerase IV 1714144 11042679 Acife_1720 Acidithiobacillus ferrivorans SS3 DNA polymerase IV YP_004784178.1 1712945 D 743299 CDS YP_004784179.1 344199853 11044314 1714259..1714498 1 NC_015942.1 KEGG: afr:AFE_2771 SpoVT/AbrB like domain protein; SpoVT/AbrB like domain-containing protein 1714498 11044314 Acife_1721 Acidithiobacillus ferrivorans SS3 SpoVT/AbrB like domain-containing protein YP_004784179.1 1714259 D 743299 CDS YP_004784180.1 344199854 11042680 1714495..1714905 1 NC_015942.1 PFAM: PilT protein, N-terminal; KEGG: afr:AFE_2655 PIN domain protein; PilT protein domain-containing protein 1714905 11042680 Acife_1722 Acidithiobacillus ferrivorans SS3 PilT protein domain-containing protein YP_004784180.1 1714495 D 743299 CDS YP_004784181.1 344199855 11042681 complement(1715004..1715615) 1 NC_015942.1 hypothetical protein 1715615 11042681 Acife_1723 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784181.1 1715004 R 743299 CDS YP_004784182.1 344199856 11042682 1715796..1715939 1 NC_015942.1 hypothetical protein 1715939 11042682 Acife_1724 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784182.1 1715796 D 743299 CDS YP_004784183.1 344199857 11042683 1716006..1716755 1 NC_015942.1 hypothetical protein 1716755 11042683 Acife_1725 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784183.1 1716006 D 743299 CDS YP_004784184.1 344199858 11042684 1717071..1717511 1 NC_015942.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: noc:Noc_0566 glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1717511 11042684 Acife_1726 Acidithiobacillus ferrivorans SS3 glyoxalase/bleomycin resistance protein/dioxygenase YP_004784184.1 1717071 D 743299 CDS YP_004784185.1 344199859 11042685 1717654..1717941 1 NC_015942.1 KEGG: nhl:Nhal_1040 restriction modification system DNA specificity domain protein; hypothetical protein 1717941 11042685 Acife_1727 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784185.1 1717654 D 743299 CDS YP_004784186.1 344199860 11044315 1717938..1718405 1 NC_015942.1 PFAM: TspO/MBR-related protein; KEGG: hna:Hneap_0210 TspO and MBR like protein; TspO and MBR like protein 1718405 11044315 Acife_1728 Acidithiobacillus ferrivorans SS3 TspO and MBR like protein YP_004784186.1 1717938 D 743299 CDS YP_004784187.1 344199861 11042686 1718427..1718678 1 NC_015942.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: afe:Lferr_0929 pyridoxamine 5'-phosphate oxidase-like protein; FMN-binding pyridoxamine 5'-phosphate oxidase-like protein 1718678 11042686 Acife_1729 Acidithiobacillus ferrivorans SS3 FMN-binding pyridoxamine 5'-phosphate oxidase-like protein YP_004784187.1 1718427 D 743299 CDS YP_004784188.1 344199862 11042687 1718662..1719237 1 NC_015942.1 KEGG: mpl:Mpal_2429 membrane protein-like protein; hypothetical protein 1719237 11042687 Acife_1730 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784188.1 1718662 D 743299 CDS YP_004784189.1 344199863 11042688 1719298..1719879 1 NC_015942.1 KEGG: afr:AFE_0919 hypothetical protein; hypothetical protein 1719879 11042688 Acife_1731 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784189.1 1719298 D 743299 CDS YP_004784190.1 344199864 11042689 1719852..1720463 1 NC_015942.1 KEGG: afr:AFE_0918 PAP2 family protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; phosphoesterase PA-phosphatase-like protein 1720463 11042689 Acife_1732 Acidithiobacillus ferrivorans SS3 phosphoesterase PA-phosphatase-like protein YP_004784190.1 1719852 D 743299 CDS YP_004784191.1 344199865 11042690 1720556..1720894 1 NC_015942.1 hypothetical protein 1720894 11042690 Acife_1733 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784191.1 1720556 D 743299 CDS YP_004784192.1 344199866 11042691 1720891..1721472 1 NC_015942.1 KEGG: pol:Bpro_5386 hypothetical protein; hypothetical protein 1721472 11042691 Acife_1734 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784192.1 1720891 D 743299 CDS YP_004784193.1 344199867 11042692 1721501..1721830 1 NC_015942.1 hypothetical protein 1721830 11042692 Acife_1735 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784193.1 1721501 D 743299 CDS YP_004784194.1 344199868 11044316 complement(1722136..1723116) 1 NC_015942.1 KEGG: rpc:RPC_0124 hypothetical protein; hypothetical protein 1723116 11044316 Acife_1736 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784194.1 1722136 R 743299 CDS YP_004784195.1 344199869 11042693 complement(1723421..1724713) 1 NC_015942.1 KEGG: sjp:SJA_C1-26360 hypothetical protein; hypothetical protein 1724713 11042693 Acife_1737 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784195.1 1723421 R 743299 CDS YP_004784196.1 344199870 11044318 complement(1726593..1727018) 1 NC_015942.1 PFAM: Ferric-uptake regulator; KEGG: afe:Lferr_1623 Fur family ferric uptake regulator; Fur family ferric uptake regulator 1727018 11044318 Acife_1740 Acidithiobacillus ferrivorans SS3 Fur family ferric uptake regulator YP_004784196.1 1726593 R 743299 CDS YP_004784197.1 344199871 11042696 complement(1727085..1728176) 1 NC_015942.1 PFAM: FAD dependent oxidoreductase; KEGG: afr:AFE_1956 oxidoreductase, FAD-binding; FAD dependent oxidoreductase 1728176 11042696 Acife_1741 Acidithiobacillus ferrivorans SS3 FAD dependent oxidoreductase YP_004784197.1 1727085 R 743299 CDS YP_004784198.1 344199872 11042697 complement(1728194..1731751) 1 NC_015942.1 PFAM: Protein of unknown function DUF490; KEGG: afr:AFE_1957 hypothetical protein; hypothetical protein 1731751 11042697 Acife_1742 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784198.1 1728194 R 743299 CDS YP_004784199.1 344199873 11042698 complement(1731748..1733505) 1 NC_015942.1 PFAM: Bacterial surface antigen (D15); Surface antigen variable number; KEGG: afe:Lferr_1626 surface antigen (D15); surface antigen (D15) 1733505 11042698 Acife_1743 Acidithiobacillus ferrivorans SS3 surface antigen (D15) YP_004784199.1 1731748 R 743299 CDS YP_004784200.1 344199874 11042699 complement(1733766..1734029) 1 NC_015942.1 KEGG: afr:AFE_1959 hypothetical protein; hypothetical protein 1734029 11042699 Acife_1744 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784200.1 1733766 R 743299 CDS YP_004784201.1 344199875 11044319 complement(1734340..1735572) 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_1961 AmpG permease protein, putative; major facilitator superfamily protein 1735572 11044319 Acife_1745 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004784201.1 1734340 R 743299 CDS YP_004784202.1 344199876 11042701 complement(1736005..1736250) 1 NC_015942.1 KEGG: afe:Lferr_1631 hypothetical protein; hypothetical protein 1736250 11042701 Acife_1747 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784202.1 1736005 R 743299 CDS YP_004784203.1 344199877 11044320 complement(1736667..1737110) 1 NC_015942.1 KEGG: afr:AFE_0099 hypothetical protein; hypothetical protein 1737110 11044320 Acife_1748 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784203.1 1736667 R 743299 CDS YP_004784204.1 344199878 11042702 complement(1737201..1737998) 1 NC_015942.1 KEGG: afr:AFE_0537 PAP2 family protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; phosphoesterase PA-phosphatase-like protein 1737998 11042702 Acife_1749 Acidithiobacillus ferrivorans SS3 phosphoesterase PA-phosphatase-like protein YP_004784204.1 1737201 R 743299 CDS YP_004784205.1 344199879 11044321 complement(1738094..1739344) 1 NC_015942.1 KEGG: bpy:Bphyt_0287 major facilitator superfamily MFS_1; manually curated; PFAM: Major facilitator superfamily MFS-1; major facilitator superfamily protein 1739344 11044321 Acife_1750 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004784205.1 1738094 R 743299 CDS YP_004784206.1 344199880 11042704 complement(1740061..1740903) 1 NC_015942.1 PFAM: Heat shock protein Hsp33 protein; KEGG: afr:AFE_1408 33 kDa chaperonin; Hsp33 protein 1740903 11042704 Acife_1751 Acidithiobacillus ferrivorans SS3 Hsp33 protein YP_004784206.1 1740061 R 743299 CDS YP_004784207.1 344199881 11042705 complement(1740896..1741666) 1 NC_015942.1 PFAM: PP-loop; KEGG: afr:AFE_1407 PP-loop family protein; PP-loop domain-containing protein 1741666 11042705 Acife_1752 Acidithiobacillus ferrivorans SS3 PP-loop domain-containing protein YP_004784207.1 1740896 R 743299 CDS YP_004784208.1 344199882 11042706 complement(1741668..1742639) 1 NC_015942.1 KEGG: afr:AFE_1406 kinase, PfkB family; TIGRFAM: RfaE bifunctional protein, domain I; PFAM: Carbohydrate/purine kinase; rfaE bifunctional protein 1742639 11042706 Acife_1753 Acidithiobacillus ferrivorans SS3 rfaE bifunctional protein YP_004784208.1 1741668 R 743299 CDS YP_004784209.1 344199883 11044322 complement(1742620..1743942) 1 NC_015942.1 KEGG: afr:AFE_1405 UDP-glucose 6-dehydrogenase; TIGRFAM: Nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase, N-terminal; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase, C-terminal; nucleotide sugar dehydrogenase 1743942 11044322 Acife_1754 Acidithiobacillus ferrivorans SS3 nucleotide sugar dehydrogenase YP_004784209.1 1742620 R 743299 CDS YP_004784210.1 344199884 11042707 complement(1743946..1744335) 1 NC_015942.1 TIGRFAM: Holo-[acyl carrier protein] synthase; Phosphopantethiene-protein transferase; HAMAP: Holo-[acyl-carrier-protein] synthase; KEGG: afr:AFE_1404 holo-(acyl-carrier-protein) synthase; PFAM: 4'-phosphopantetheinyl transferase; holo-ACP synthase 1744335 11042707 Acife_1755 Acidithiobacillus ferrivorans SS3 holo-ACP synthase YP_004784210.1 1743946 R 743299 CDS YP_004784211.1 344199885 11044323 complement(1744332..1745057) 1 NC_015942.1 TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; KEGG: afr:AFE_1403 pyridoxine 5'-phosphate synthase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxJ; pyridoxine 5'-phosphate synthase 1745057 11044323 Acife_1756 Acidithiobacillus ferrivorans SS3 pyridoxine 5'-phosphate synthase YP_004784211.1 1744332 R 743299 CDS YP_004784212.1 344199886 11042708 complement(1745054..1745824) 1 NC_015942.1 TIGRFAM: Recombination protein O, RecO; HAMAP: DNA repair protein recO; KEGG: afr:AFE_1402 DNA repair protein RecO, putative; PFAM: Recombination protein O, RecO; DNA repair protein recO 1745824 11042708 Acife_1757 Acidithiobacillus ferrivorans SS3 DNA repair protein recO YP_004784212.1 1745054 R 743299 CDS YP_004784213.1 344199887 11042709 complement(1745814..1746728) 1 NC_015942.1 TIGRFAM: GTP-binding protein Era; Small GTP-binding protein; HAMAP: GTP-binding protein Era; KEGG: afr:AFE_1401 GTP-binding protein Era; PFAM: GTP-binding protein, HSR1-related; K Homology, type 2; GTP-binding protein Era-like-protein 1746728 11042709 Acife_1758 Acidithiobacillus ferrivorans SS3 GTP-binding protein Era-like-protein YP_004784213.1 1745814 R 743299 CDS YP_004784214.1 344199888 11044324 complement(1746721..1747401) 1 NC_015942.1 SMART: Ribonuclease III; Double-stranded RNA binding; TIGRFAM: Ribonuclease III, bacterial; KEGG: afr:AFE_1400 ribonuclease III; HAMAP: Ribonuclease III, bacterial; PFAM: Ribonuclease III; Double-stranded RNA binding; ribonuclease 3 1747401 11044324 Acife_1759 Acidithiobacillus ferrivorans SS3 ribonuclease 3 YP_004784214.1 1746721 R 743299 CDS YP_004784215.1 344199889 11042710 complement(1747466..1747900) 1 NC_015942.1 KEGG: afr:AFE_1399 hypothetical protein; hypothetical protein 1747900 11042710 Acife_1760 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784215.1 1747466 R 743299 CDS YP_004784216.1 344199890 11042711 complement(1747988..1748779) 1 NC_015942.1 KEGG: afr:AFE_1398 signal peptidase I; TIGRFAM: Peptidase S26A, signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region; signal peptidase I 1748779 11042711 Acife_1761 Acidithiobacillus ferrivorans SS3 signal peptidase I YP_004784216.1 1747988 R 743299 CDS YP_004784217.1 344199891 11042712 complement(1748846..1750648) 1 NC_015942.1 TIGRFAM: GTP-binding protein LepA; Small GTP-binding protein; HAMAP: GTP-binding protein lepA; KEGG: afr:AFE_1397 GTP-binding protein LepA; PFAM: GTP-binding protein LepA, C-terminal; Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, C-terminal; GTP-binding protein lepA 1750648 11042712 Acife_1762 Acidithiobacillus ferrivorans SS3 GTP-binding protein lepA YP_004784217.1 1748846 R 743299 CDS YP_004784218.1 344199892 11042713 complement(1750754..1752238) 1 NC_015942.1 TIGRFAM: Peptidase S1C, Do; PFAM: Peptidase S1/S6, chymotrypsin/Hap; PDZ/DHR/GLGF; KEGG: afe:Lferr_1117 protease Do; SMART: PDZ/DHR/GLGF; protease Do 1752238 11042713 Acife_1763 Acidithiobacillus ferrivorans SS3 protease Do YP_004784218.1 1750754 R 743299 CDS YP_004784219.1 344199893 11042714 complement(1752374..1753039) 1 NC_015942.1 KEGG: afr:AFE_1395 hypothetical protein; hypothetical protein 1753039 11042714 Acife_1764 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784219.1 1752374 R 743299 CDS YP_004784220.1 344199894 11044325 complement(1753036..1753662) 1 NC_015942.1 KEGG: afr:AFE_1394 RNA polymerase sigma-E factor; TIGRFAM: RNA polymerase sigma-70 RpoE type; RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma factor 70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 subunit 1753662 11044325 Acife_1765 Acidithiobacillus ferrivorans SS3 ECF subfamily RNA polymerase sigma-24 subunit YP_004784220.1 1753036 R 743299 CDS YP_004784221.1 344199895 11042715 1753778..1755367 1 NC_015942.1 KEGG: afr:AFE_1392 L-aspartate oxidase; TIGRFAM: L-aspartate oxidase; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; Fumarate reductase/succinate dehydrogenase flavoprotein, C-terminal; L-aspartate oxidase 1755367 11042715 Acife_1766 Acidithiobacillus ferrivorans SS3 L-aspartate oxidase YP_004784221.1 1753778 D 743299 CDS YP_004784222.1 344199896 11042716 complement(1755312..1755809) 1 NC_015942.1 KEGG: afr:AFE_1393 hypothetical protein; hypothetical protein 1755809 11042716 Acife_1767 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784222.1 1755312 R 743299 CDS YP_004784223.1 344199897 11042717 1755826..1756791 1 NC_015942.1 KEGG: afr:AFE_1391 folate-binding protein YgfZ; TIGRFAM: Folate-binding, YgfZ; PFAM: Glycine cleavage T-protein, N-terminal; folate-binding protein YgfZ 1756791 11042717 Acife_1768 Acidithiobacillus ferrivorans SS3 folate-binding protein YgfZ YP_004784223.1 1755826 D 743299 CDS YP_004784224.1 344199898 11042718 1756795..1757145 1 NC_015942.1 KEGG: afr:AFE_1389 hypothetical protein; hypothetical protein 1757145 11042718 Acife_1769 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784224.1 1756795 D 743299 CDS YP_004784225.1 344199899 11042719 complement(1757197..1758336) 1 NC_015942.1 PFAM: FIST C domain; FIST domain, N-terminal; KEGG: afr:AFE_1387 hypothetical protein; FIST C domain-containing protein 1758336 11042719 Acife_1770 Acidithiobacillus ferrivorans SS3 FIST C domain-containing protein YP_004784225.1 1757197 R 743299 CDS YP_004784226.1 344199900 11042720 complement(1758639..1759397) 1 NC_015942.1 KEGG: afr:AFE_0993 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 1759397 11042720 Acife_1771 Acidithiobacillus ferrivorans SS3 metallo-beta-lactamase family protein YP_004784226.1 1758639 R 743299 CDS YP_004784227.1 344199901 11042721 complement(1759394..1760167) 1 NC_015942.1 KEGG: afr:AFE_0992 hydrolase, TatD family; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related; hydrolase, TatD family 1760167 11042721 Acife_1772 Acidithiobacillus ferrivorans SS3 hydrolase, TatD family YP_004784227.1 1759394 R 743299 CDS YP_004784228.1 344199902 11044327 complement(1760191..1760958) 1 NC_015942.1 KEGG: afr:AFE_0991 tRNA (guanosine-2'-O-)-methyltransferase, putative; TIGRFAM: RNA methyltransferase TrmH, group 3; PFAM: tRNA/rRNA methyltransferase, SpoU; RNA 2-O ribose methyltransferase, substrate binding; TrmH family RNA methyltransferase 1760958 11044327 Acife_1773 Acidithiobacillus ferrivorans SS3 TrmH family RNA methyltransferase YP_004784228.1 1760191 R 743299 CDS YP_004784229.1 344199903 11042722 complement(1760951..1761418) 1 NC_015942.1 KEGG: afe:Lferr_1104 hypothetical protein; hypothetical protein 1761418 11042722 Acife_1774 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784229.1 1760951 R 743299 CDS YP_004784230.1 344199904 11042723 complement(1761472..1761897) 1 NC_015942.1 KEGG: afe:Lferr_1103 hypothetical protein; hypothetical protein 1761897 11042723 Acife_1775 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784230.1 1761472 R 743299 CDS YP_004784231.1 344199905 11044328 complement(1761988..1762983) 1 NC_015942.1 PFAM: Uncharacterised protein family UPF0118; KEGG: afr:AFE_0988 hypothetical protein; hypothetical protein 1762983 11044328 Acife_1776 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784231.1 1761988 R 743299 CDS YP_004784232.1 344199906 11042724 complement(1763130..1763990) 1 NC_015942.1 KEGG: afr:AFE_0987 hypothetical protein; PFAM: PHP, C-terminal; SMART: Polymerase/histidinol phosphatase, N-terminal; PHP domain-containing protein 1763990 11042724 Acife_1777 Acidithiobacillus ferrivorans SS3 PHP domain-containing protein YP_004784232.1 1763130 R 743299 CDS YP_004784233.1 344199907 11044329 1764094..1764819 1 NC_015942.1 KEGG: afr:AFE_0986 hypothetical protein; hypothetical protein 1764819 11044329 Acife_1778 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784233.1 1764094 D 743299 CDS YP_004784234.1 344199908 11042725 complement(1764914..1765516) 1 NC_015942.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Peroxiredoxin, C-terminal; KEGG: afr:AFE_0985 antioxidant, AhpC/Tsa family; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 1765516 11042725 Acife_1779 Acidithiobacillus ferrivorans SS3 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_004784234.1 1764914 R 743299 CDS YP_004784235.1 344199909 11042726 1765730..1766053 1 NC_015942.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: afr:AFE_0984 ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 1766053 11042726 Acife_1780 Acidithiobacillus ferrivorans SS3 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004784235.1 1765730 D 743299 CDS YP_004784236.1 344199910 11044330 1766050..1767738 1 NC_015942.1 KEGG: afr:AFE_0983 ABC transporter, ATP-binding protein, MsbA family; PFAM: ABC transporter-like; ABC transporter, transmembrane region; SMART: ATPase, AAA+ type, core; ABC transporter 1767738 11044330 Acife_1781 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004784236.1 1766050 D 743299 CDS YP_004784237.1 344199911 11042727 complement(1767756..1769765) 1 NC_015942.1 KEGG: gca:Galf_1825 hypothetical protein; PFAM: Transglutaminase-like; SMART: Transglutaminase-like; transglutaminase domain-containing protein 1769765 11042727 Acife_1782 Acidithiobacillus ferrivorans SS3 transglutaminase domain-containing protein YP_004784237.1 1767756 R 743299 CDS YP_004784238.1 344199912 11042728 complement(1769769..1770770) 1 NC_015942.1 KEGG: geb:GM18_1177 hypothetical protein; hypothetical protein 1770770 11042728 Acife_1783 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784238.1 1769769 R 743299 CDS YP_004784239.1 344199913 11042729 complement(1770767..1771675) 1 NC_015942.1 KEGG: pag:PLES_21891 putative MoxR protein; PFAM: ATPase associated with various cellular activities, AAA-3; SMART: ATPase, AAA+ type, core; ATPase 1771675 11042729 Acife_1784 Acidithiobacillus ferrivorans SS3 ATPase YP_004784239.1 1770767 R 743299 CDS YP_004784240.1 344199914 11042730 complement(1771672..1773102) 1 NC_015942.1 PFAM: Glycine cleavage system P-protein, N-terminal; KEGG: afr:AFE_0982 glycine dehydrogenase subunit 2; glycine cleavage system P-protein 1773102 11042730 Acife_1785 Acidithiobacillus ferrivorans SS3 glycine cleavage system P-protein YP_004784240.1 1771672 R 743299 CDS YP_004784241.1 344199915 11042731 complement(1773099..1774442) 1 NC_015942.1 PFAM: Glycine cleavage system P-protein, N-terminal; KEGG: afr:AFE_0981 glycine dehydrogenase subunit 1; glycine cleavage system P-protein 1774442 11042731 Acife_1786 Acidithiobacillus ferrivorans SS3 glycine cleavage system P-protein YP_004784241.1 1773099 R 743299 CDS YP_004784242.1 344199916 11044331 complement(1774447..1774830) 1 NC_015942.1 TIGRFAM: Glycine cleavage H-protein, subgroup; HAMAP: Glycine cleavage H-protein; KEGG: afr:AFE_0980 glycine cleavage system H protein; PFAM: Glycine cleavage H-protein; glycine cleavage system H protein 1774830 11044331 Acife_1787 Acidithiobacillus ferrivorans SS3 glycine cleavage system H protein YP_004784242.1 1774447 R 743299 CDS YP_004784243.1 344199917 11042732 complement(1774827..1775954) 1 NC_015942.1 KEGG: afe:Lferr_1093 glycine cleavage system T protein; TIGRFAM: Glycine cleavage system T protein; PFAM: Glycine cleavage T-protein, N-terminal; Glycine cleavage T-protein, C-terminal barrel; glycine cleavage system T protein 1775954 11042732 Acife_1788 Acidithiobacillus ferrivorans SS3 glycine cleavage system T protein YP_004784243.1 1774827 R 743299 CDS YP_004784244.1 344199918 11042733 complement(1776043..1776528) 1 NC_015942.1 KEGG: afr:AFE_0977 hypothetical protein; HAMAP: UPF0234 protein yajQ; PFAM: Protein of unknown function DUF520; hypothetical protein 1776528 11042733 Acife_1789 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784244.1 1776043 R 743299 CDS YP_004784245.1 344199919 11042734 complement(1776540..1777025) 1 NC_015942.1 PFAM: Molybdopterin biosynthesis MoaE; KEGG: afr:AFE_0976 molybdopterin converting factor, subunit 2; molybdopterin biosynthesis MoaE protein 1777025 11042734 Acife_1790 Acidithiobacillus ferrivorans SS3 molybdopterin biosynthesis MoaE protein YP_004784245.1 1776540 R 743299 CDS YP_004784246.1 344199920 11044332 complement(1777028..1777270) 1 NC_015942.1 PFAM: ThiamineS; KEGG: afr:AFE_0975 molybdopterin converting factor, subunit 1; sulfur carrier protein ThiS 1777270 11044332 Acife_1791 Acidithiobacillus ferrivorans SS3 sulfur carrier protein ThiS YP_004784246.1 1777028 R 743299 CDS YP_004784247.1 344199921 11042735 1777377..1778378 1 NC_015942.1 KEGG: afr:AFE_0973 putative periplasmic protease; manually curated; PFAM: Peptidase S49, N-terminal proteobacteria; Peptidase S49; peptidase S49 domain-containing protein 1778378 11042735 Acife_1792 Acidithiobacillus ferrivorans SS3 peptidase S49 domain-containing protein YP_004784247.1 1777377 D 743299 CDS YP_004784248.1 344199922 11042736 complement(1778537..1778938) 1 NC_015942.1 KEGG: afr:AFE_0965 hypothetical protein; hypothetical protein 1778938 11042736 Acife_1793 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784248.1 1778537 R 743299 CDS YP_004784249.1 344199923 11042737 complement(1778951..1779367) 1 NC_015942.1 PFAM: Protein of unknown function DUF423; KEGG: afr:AFE_0964 hypothetical protein; hypothetical protein 1779367 11042737 Acife_1794 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784249.1 1778951 R 743299 CDS YP_004784250.1 344199924 11042738 1779494..1780540 1 NC_015942.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: afr:AFE_0963 male sterility protein; NAD-dependent epimerase/dehydratase 1780540 11042738 Acife_1795 Acidithiobacillus ferrivorans SS3 NAD-dependent epimerase/dehydratase YP_004784250.1 1779494 D 743299 CDS YP_004784251.1 344199925 11044333 complement(1780553..1780969) 1 NC_015942.1 KEGG: hap:HAPS_0017 Sel1 domain protein, repeat-containing protein; PFAM: Sel1-like; SMART: Sel1-like; Sel1 domain-containing protein repeat-containing protein 1780969 11044333 Acife_1796 Acidithiobacillus ferrivorans SS3 Sel1 domain-containing protein repeat-containing protein YP_004784251.1 1780553 R 743299 CDS YP_004784252.1 344199926 11042739 complement(1780969..1783062) 1 NC_015942.1 PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_0962 glucosyltransferase MdoH; family 2 glycosyl transferase 1783062 11042739 Acife_1797 Acidithiobacillus ferrivorans SS3 family 2 glycosyl transferase YP_004784252.1 1780969 R 743299 CDS YP_004784253.1 344199927 11042740 complement(1783065..1783571) 1 NC_015942.1 KEGG: afr:AFE_0961 hypothetical protein; hypothetical protein 1783571 11042740 Acife_1798 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784253.1 1783065 R 743299 CDS YP_004784254.1 344199928 11044334 complement(1783577..1785112) 1 NC_015942.1 PFAM: Glucan biosynthesis, periplasmic, MdoG C-terminal; KEGG: afr:AFE_0960 glucan biosynthesis protein D; periplasmic glucan biosynthesis protein MdoG 1785112 11044334 Acife_1799 Acidithiobacillus ferrivorans SS3 periplasmic glucan biosynthesis protein MdoG YP_004784254.1 1783577 R 743299 CDS YP_004784255.1 344199929 11042741 1785228..1785473 1 NC_015942.1 hypothetical protein 1785473 11042741 Acife_1800 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784255.1 1785228 D 743299 CDS YP_004784256.1 344199930 11042742 1785463..1786932 1 NC_015942.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: afr:AFE_0958 pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1786932 11042742 Acife_1801 Acidithiobacillus ferrivorans SS3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004784256.1 1785463 D 743299 CDS YP_004784257.1 344199931 11042743 complement(1786954..1787436) 1 NC_015942.1 KEGG: afr:AFE_0949 hypothetical protein; hypothetical protein 1787436 11042743 Acife_1802 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784257.1 1786954 R 743299 CDS YP_004784258.1 344199932 11042744 complement(1787427..1788110) 1 NC_015942.1 PFAM: Phospholipase/carboxylesterase; KEGG: afe:Lferr_1073 phospholipase/carboxylesterase; phospholipase/carboxylesterase 1788110 11042744 Acife_1803 Acidithiobacillus ferrivorans SS3 phospholipase/carboxylesterase YP_004784258.1 1787427 R 743299 CDS YP_004784259.1 344199933 11042745 complement(1788094..1789455) 1 NC_015942.1 KEGG: afr:AFE_0957 sigma-54 dependent transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Helix-turn-helix, Fis-type; SMART: ATPase, AAA+ type, core; Fis family sigma-54 specific transcriptional regulator 1789455 11042745 Acife_1804 Acidithiobacillus ferrivorans SS3 Fis family sigma-54 specific transcriptional regulator YP_004784259.1 1788094 R 743299 CDS YP_004784260.1 344199934 11042746 complement(1789581..1791464) 1 NC_015942.1 TIGRFAM: Thiamine biosynthesis protein ThiC; HAMAP: Thiamine biosynthesis protein ThiC; KEGG: afr:AFE_0948 thiamine biosynthesis protein ThiC; PFAM: Thiamine biosynthesis protein ThiC; phosphomethylpyrimidine synthase 1791464 11042746 Acife_1805 Acidithiobacillus ferrivorans SS3 phosphomethylpyrimidine synthase YP_004784260.1 1789581 R 743299 CDS YP_004784261.1 344199935 11042747 complement(1791676..1794042) 1 NC_015942.1 PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: type III restriction protein res subunit; type III restriction protein res subunit 1794042 11042747 Acife_1806 Acidithiobacillus ferrivorans SS3 type III restriction protein res subunit YP_004784261.1 1791676 R 743299 CDS YP_004784262.1 344199936 11042748 complement(1793984..1794337) 1 NC_015942.1 PFAM: Protein of unknown function DUF86; KEGG: nhl:Nhal_0890 protein of unknown function DUF86; hypothetical protein 1794337 11042748 Acife_1807 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784262.1 1793984 R 743299 CDS YP_004784263.1 344199937 11044335 complement(1794330..1794620) 1 NC_015942.1 PFAM: Nucleotidyltransferase; KEGG: psa:PST_1417 nucleotidyltransferase family protein; DNA polymerase beta domain-containing protein 1794620 11044335 Acife_1808 Acidithiobacillus ferrivorans SS3 DNA polymerase beta domain-containing protein YP_004784263.1 1794330 R 743299 CDS YP_004784264.1 344199938 11042749 complement(1794620..1795342) 1 NC_015942.1 KEGG: neu:NE2309 adenine specific DNA methylase Mod; adenine specific DNA methylase Mod 1795342 11042749 Acife_1809 Acidithiobacillus ferrivorans SS3 adenine specific DNA methylase Mod YP_004784264.1 1794620 R 743299 CDS YP_004784265.1 344199939 11042750 complement(1795339..1796175) 1 NC_015942.1 PFAM: KilA, N-terminal/APSES-type HTH DNA-binding domain; KEGG: nit:NAL212_1509 KilA,/APSES-type HTH DNA-binding domain; KilA/APSES-type HTH DNA-binding domain-containing protein 1796175 11042750 Acife_1810 Acidithiobacillus ferrivorans SS3 KilA/APSES-type HTH DNA-binding domain-containing protein YP_004784265.1 1795339 R 743299 CDS YP_004784266.1 344199940 11042752 1796581..1798173 1 NC_015942.1 KEGG: afr:AFE_0945 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 1798173 11042752 Acife_1812 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004784266.1 1796581 D 743299 CDS YP_004784267.1 344199941 11042753 complement(1798186..1798494) 1 NC_015942.1 KEGG: afr:AFE_0944 hypothetical protein; hypothetical protein 1798494 11042753 Acife_1813 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784267.1 1798186 R 743299 CDS YP_004784268.1 344199942 11044336 complement(1798478..1799929) 1 NC_015942.1 PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; KEGG: afr:AFE_0943 phosphomannomutase, putative; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 1799929 11044336 Acife_1814 Acidithiobacillus ferrivorans SS3 phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I YP_004784268.1 1798478 R 743299 CDS YP_004784269.1 344199943 11042754 1800109..1803447 1 NC_015942.1 KEGG: afr:AFE_0942 DNA helicase, SNF2/RAD54 family; PFAM: SNF2-related; Zinc finger, SWIM-type; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SNF2-like protein 1803447 11042754 Acife_1815 Acidithiobacillus ferrivorans SS3 SNF2-like protein YP_004784269.1 1800109 D 743299 CDS YP_004784270.1 344199944 11042755 1803574..1803768 1 NC_015942.1 hypothetical protein 1803768 11042755 Acife_1816 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784270.1 1803574 D 743299 CDS YP_004784271.1 344199945 11044337 1803755..1805731 1 NC_015942.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: afe:Lferr_1059 lytic transglycosylase catalytic subunit; lytic transglycosylase 1805731 11044337 Acife_1817 Acidithiobacillus ferrivorans SS3 lytic transglycosylase YP_004784271.1 1803755 D 743299 CDS YP_004784272.1 344199946 11042756 1805698..1806912 1 NC_015942.1 KEGG: afr:AFE_0940 [NiFe] hydrogenase, beta subunit, putative; (NiFe) hydrogenase subunit beta 1806912 11042756 Acife_1818 Acidithiobacillus ferrivorans SS3 (NiFe) hydrogenase subunit beta YP_004784272.1 1805698 D 743299 CDS YP_004784273.1 344199947 11044338 1806905..1807735 1 NC_015942.1 PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: afr:AFE_0939 [NiFe] hydrogenase, gamma subunit, putative; oxidoreductase FAD/NAD(P)-binding domain-containing protein 1807735 11044338 Acife_1819 Acidithiobacillus ferrivorans SS3 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_004784273.1 1806905 D 743299 CDS YP_004784274.1 344199948 11042757 1807740..1808537 1 NC_015942.1 PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; KEGG: afr:AFE_0938 [NiFe] hydrogenase, delta subunit, putative; NADH ubiquinone oxidoreductase 20 kDa subunit 1808537 11042757 Acife_1820 Acidithiobacillus ferrivorans SS3 NADH ubiquinone oxidoreductase 20 kDa subunit YP_004784274.1 1807740 D 743299 CDS YP_004784275.1 344199949 11042758 1808521..1809819 1 NC_015942.1 PFAM: Nickel-dependent hydrogenase, large subunit; KEGG: afe:Lferr_1055 nickel-dependent hydrogenase large subunit; nickel-dependent hydrogenase large subunit 1809819 11042758 Acife_1821 Acidithiobacillus ferrivorans SS3 nickel-dependent hydrogenase large subunit YP_004784275.1 1808521 D 743299 CDS YP_004784276.1 344199950 11042759 1809816..1810310 1 NC_015942.1 KEGG: afr:AFE_0936 hydrogenase maturation protease; TIGRFAM: Peptidase A31, hydrogen uptake protein; PFAM: Peptidase A31, hydrogen uptake protein; hydrogenase maturation protease 1810310 11042759 Acife_1822 Acidithiobacillus ferrivorans SS3 hydrogenase maturation protease YP_004784276.1 1809816 D 743299 CDS YP_004784277.1 344199951 11044339 complement(1810279..1811331) 1 NC_015942.1 KEGG: rme:Rmet_1540 hydrogenase expression/formation protein HypE; TIGRFAM: Hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; hydrogenase expression/formation protein HypE 1811331 11044339 Acife_1823 Acidithiobacillus ferrivorans SS3 hydrogenase expression/formation protein HypE YP_004784277.1 1810279 R 743299 CDS YP_004784278.1 344199952 11042760 complement(1811331..1812503) 1 NC_015942.1 KEGG: afr:AFE_3290 hydrogenase expression/formation protein HypD; TIGRFAM: Hydrogenase formation HypD protein; PFAM: Hydrogenase formation HypD protein; hydrogenase expression/formation protein HypD 1812503 11042760 Acife_1824 Acidithiobacillus ferrivorans SS3 hydrogenase expression/formation protein HypD YP_004784278.1 1811331 R 743299 CDS YP_004784279.1 344199953 11042761 complement(1812500..1812745) 1 NC_015942.1 KEGG: afr:AFE_3289 hydrogenase assembly chaperone HypC; TIGRFAM: Hydrogenase expression/formation protein, HupF/HypC; PFAM: Hydrogenase expression/formation protein, HupF/HypC; hydrogenase assembly chaperone hypC/hupF 1812745 11042761 Acife_1825 Acidithiobacillus ferrivorans SS3 hydrogenase assembly chaperone hypC/hupF YP_004784279.1 1812500 R 743299 CDS YP_004784280.1 344199954 11042762 complement(1812759..1815083) 1 NC_015942.1 TIGRFAM: Hydrogenase maturation factor, HypF-type; HAMAP: Acylphosphatase; KEGG: rme:Rmet_1537 (NiFe) hydrogenase maturation protein HypF; PFAM: Sua5/YciO/YrdC, N-terminal; Acylphosphatase-like; Zinc finger, HypF-type; acylphosphatase 1815083 11042762 Acife_1826 Acidithiobacillus ferrivorans SS3 acylphosphatase YP_004784280.1 1812759 R 743299 CDS YP_004784281.1 344199955 11042763 complement(1815083..1815973) 1 NC_015942.1 KEGG: afe:Lferr_2886 hydrogenase accessory protein HypB; TIGRFAM: Hydrogenase accessory protein HypB; PFAM: Cobalamin (vitamin B12) biosynthesis CobW-like; hydrogenase accessory protein HypB 1815973 11042763 Acife_1827 Acidithiobacillus ferrivorans SS3 hydrogenase accessory protein HypB YP_004784281.1 1815083 R 743299 CDS YP_004784282.1 344199956 11044340 complement(1815970..1816311) 1 NC_015942.1 TIGRFAM: Hydrogenase nickel incorporation protein HypA/HybF; HAMAP: Hydrogenase nickel incorporation protein HypA/HybF; KEGG: afr:AFE_3287 hydrogenase nickel insertion protein HypA; PFAM: Hydrogenase nickel incorporation protein HypA/HybF; hydrogenase nickel incorporation protein hypA 1816311 11044340 Acife_1828 Acidithiobacillus ferrivorans SS3 hydrogenase nickel incorporation protein hypA YP_004784282.1 1815970 R 743299 CDS YP_004784283.1 344199957 11042764 1816536..1817132 1 NC_015942.1 KEGG: afr:AFE_0935 hypothetical protein; hypothetical protein 1817132 11042764 Acife_1829 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784283.1 1816536 D 743299 CDS YP_004784284.1 344199958 11042765 complement(1817129..1819765) 1 NC_015942.1 KEGG: afr:AFE_0934 alanyl-tRNA synthetase; TIGRFAM: Alanyl-tRNA synthetase, class IIc; PFAM: Alanyl-tRNA synthetase, class IIc, N-terminal; Threonyl/alanyl tRNA synthetase, SAD; Phosphoesterase, DHHA1; alanyl-tRNA synthetase 1819765 11042765 Acife_1830 Acidithiobacillus ferrivorans SS3 alanyl-tRNA synthetase YP_004784284.1 1817129 R 743299 CDS YP_004784285.1 344199959 11042766 complement(1819814..1820272) 1 NC_015942.1 KEGG: afr:AFE_0933 regulatory protein RecX; HAMAP: Regulatory protein recX; PFAM: Regulatory protein RecX; regulatory protein recX 1820272 11042766 Acife_1831 Acidithiobacillus ferrivorans SS3 regulatory protein recX YP_004784285.1 1819814 R 743299 CDS YP_004784286.1 344199960 11044341 complement(1820273..1821319) 1 NC_015942.1 SMART: ATPase, AAA+ type, core; TIGRFAM: DNA recombination and repair protein RecA; KEGG: afr:AFE_0932 RecA protein; HAMAP: DNA recombination and repair protein RecA; PFAM: DNA recombination and repair protein RecA; protein recA 1821319 11044341 Acife_1832 Acidithiobacillus ferrivorans SS3 protein recA YP_004784286.1 1820273 R 743299 CDS YP_004784287.1 344199961 11042767 complement(1821538..1822386) 1 NC_015942.1 KEGG: afr:AFE_0930 CinA family protein; TIGRFAM: CinA, C-terminal; PFAM: CinA, C-terminal; CinA domain-containing protein 1822386 11042767 Acife_1833 Acidithiobacillus ferrivorans SS3 CinA domain-containing protein YP_004784287.1 1821538 R 743299 CDS YP_004784288.1 344199962 11044342 complement(1822383..1822871) 1 NC_015942.1 PFAM: Phosphatidylglycerophosphatase A; KEGG: afr:AFE_0929 phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 1822871 11044342 Acife_1834 Acidithiobacillus ferrivorans SS3 phosphatidylglycerophosphatase A YP_004784288.1 1822383 R 743299 CDS YP_004784289.1 344199963 11042768 complement(1822861..1823883) 1 NC_015942.1 KEGG: afr:AFE_0928 thiamine-monophosphate kinase; TIGRFAM: Thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein, C-terminal; thiamine-monophosphate kinase 1823883 11042768 Acife_1835 Acidithiobacillus ferrivorans SS3 thiamine-monophosphate kinase YP_004784289.1 1822861 R 743299 CDS YP_004784290.1 344199964 11042769 1823945..1824820 1 NC_015942.1 KEGG: afr:AFE_0927 glutamyl-tRNA synthetase-related protein; TIGRFAM: glutamyl-queuosine tRNA(Asp) synthetase; PFAM: Glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; glutamyl-queuosine tRNA(Asp) synthetase 1824820 11042769 Acife_1836 Acidithiobacillus ferrivorans SS3 glutamyl-queuosine tRNA(Asp) synthetase YP_004784290.1 1823945 D 743299 CDS YP_004784291.1 344199965 11044343 1824847..1825545 1 NC_015942.1 TIGRFAM: Sugar fermentation stimulation protein; HAMAP: Sugar fermentation stimulation protein; KEGG: afr:AFE_0926 sugar fermentation stimulation protein; PFAM: Sugar fermentation stimulation protein; Sugar fermentation stimulation protein A 1825545 11044343 Acife_1837 Acidithiobacillus ferrivorans SS3 Sugar fermentation stimulation protein A YP_004784291.1 1824847 D 743299 CDS YP_004784292.1 344199966 11042770 1825564..1826373 1 NC_015942.1 KEGG: afr:AFE_0925 methionine aminopeptidase, type I; TIGRFAM: Peptidase M24A, methionine aminopeptidase, subfamily 1; PFAM: Peptidase M24, structural domain; methionine aminopeptidase, type I 1826373 11042770 Acife_1838 Acidithiobacillus ferrivorans SS3 methionine aminopeptidase, type I YP_004784292.1 1825564 D 743299 CDS YP_004784293.1 344199967 11044344 1826376..1828967 1 NC_015942.1 SMART: Metal-dependent phosphohydrolase, HD region; TIGRFAM: Protein-PII uridylyltransferase; KEGG: afr:AFE_0924 protein-P-II uridylyltransferase; HAMAP: Protein-PII uridylyltransferase; PFAM: PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; Nucleotidyltransferase; Metal-dependent phosphohydrolase, HD region, subdomain; Amino acid-binding ACT; UTP-GlnB uridylyltransferase, GlnD 1828967 11044344 Acife_1839 Acidithiobacillus ferrivorans SS3 UTP-GlnB uridylyltransferase, GlnD YP_004784293.1 1826376 D 743299 CDS YP_004784294.1 344199968 11042771 1829038..1829706 1 NC_015942.1 KEGG: afr:AFE_0923 hypothetical protein; HAMAP: Uncharacterised protein family UPF0274; PFAM: Uncharacterised protein family UPF0274; High frequency lysogenization protein hflD 1829706 11042771 Acife_1840 Acidithiobacillus ferrivorans SS3 High frequency lysogenization protein hflD YP_004784294.1 1829038 D 743299 CDS YP_004784295.1 344199969 11042772 complement(1829986..1831005) 1 NC_015942.1 hypothetical protein 1831005 11042772 Acife_1841 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784295.1 1829986 R 743299 CDS YP_004784296.1 344199970 11042773 complement(1831367..1832302) 1 NC_015942.1 PFAM: Cytochrome c oxidase caa3-type, assembly factor CtaG-related; KEGG: afr:AFE_0131 hypothetical protein; cytochrome c oxidase caa3-type, assembly factor CtaG-like protein 1832302 11042773 Acife_1842 Acidithiobacillus ferrivorans SS3 cytochrome c oxidase caa3-type, assembly factor CtaG-like protein YP_004784296.1 1831367 R 743299 CDS YP_004784297.1 344199971 11042774 complement(1834137..1834358) 1 NC_015942.1 hypothetical protein 1834358 11042774 Acife_1845 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784297.1 1834137 R 743299 CDS YP_004784298.1 344199972 11042775 complement(1834432..1834749) 1 NC_015942.1 hypothetical protein 1834749 11042775 Acife_1846 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784298.1 1834432 R 743299 CDS YP_004784299.1 344199973 11042776 1834839..1835513 1 NC_015942.1 KEGG: afr:AFE_1943 DsbG domain protein; DsbG domain-containing protein 1835513 11042776 Acife_1847 Acidithiobacillus ferrivorans SS3 DsbG domain-containing protein YP_004784299.1 1834839 D 743299 CDS YP_004784300.1 344199974 11042777 complement(1835583..1835948) 1 NC_015942.1 KEGG: afr:AFE_3114 hypothetical protein; hypothetical protein 1835948 11042777 Acife_1848 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784300.1 1835583 R 743299 CDS YP_004784301.1 344199975 11042778 complement(1836094..1837281) 1 NC_015942.1 KEGG: afe:Lferr_2711 cytochrome c-type biogenesis protein CcsB; TIGRFAM: Cytochrome c-type biogenesis protein CcsA; PFAM: Cytochrome c assembly protein; cytochrome c-type biogenesis protein CcsB 1837281 11042778 Acife_1849 Acidithiobacillus ferrivorans SS3 cytochrome c-type biogenesis protein CcsB YP_004784301.1 1836094 R 743299 CDS YP_004784302.1 344199976 11042779 complement(1837274..1839124) 1 NC_015942.1 PFAM: ResB-like; KEGG: afr:AFE_3112 cytochrome c-type biogenesis protein ResB; ResB family protein 1839124 11042779 Acife_1850 Acidithiobacillus ferrivorans SS3 ResB family protein YP_004784302.1 1837274 R 743299 CDS YP_004784303.1 344199977 11044347 complement(1839121..1839381) 1 NC_015942.1 hypothetical protein 1839381 11044347 Acife_1851 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784303.1 1839121 R 743299 CDS YP_004784304.1 344199978 11042781 complement(1839991..1840791) 1 NC_015942.1 KEGG: afr:AFE_3133 hypothetical protein; hypothetical protein 1840791 11042781 Acife_1853 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784304.1 1839991 R 743299 CDS YP_004784305.1 344199979 11044348 1841251..1841655 1 NC_015942.1 KEGG: afr:AFE_3135 hypothetical protein; hypothetical protein 1841655 11044348 Acife_1854 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784305.1 1841251 D 743299 CDS YP_004784306.1 344199980 11042782 complement(1841973..1842311) 1 NC_015942.1 PFAM: Conjugal transfer, TraD, alpha-type; conjugal transfer TraD family protein 1842311 11042782 Acife_1855 Acidithiobacillus ferrivorans SS3 conjugal transfer TraD family protein YP_004784306.1 1841973 R 743299 CDS YP_004784307.1 344199981 11042784 1843104..1844357 1 NC_015942.1 KEGG: afr:AFE_3136 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; integral membrane sensor signal transduction histidine kinase 1844357 11042784 Acife_1857 Acidithiobacillus ferrivorans SS3 integral membrane sensor signal transduction histidine kinase YP_004784307.1 1843104 D 743299 CDS YP_004784308.1 344199982 11042785 1844357..1844932 1 NC_015942.1 KEGG: afe:Lferr_2736 two component fis family transcriptional regulator; PFAM: Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; two component Fis family transcriptional regulator 1844932 11042785 Acife_1858 Acidithiobacillus ferrivorans SS3 two component Fis family transcriptional regulator YP_004784308.1 1844357 D 743299 CDS YP_004784309.1 344199983 11042786 complement(1844992..1845630) 1 NC_015942.1 KEGG: afr:AFE_3138 oxidoreductase, 2OG-Fe(II) oxygenase family; PFAM: Oxoglutarate/iron-dependent oxygenase; SMART: Prolyl 4-hydroxylase, alpha subunit; 2OG-Fe(II) oxygenase 1845630 11042786 Acife_1859 Acidithiobacillus ferrivorans SS3 2OG-Fe(II) oxygenase YP_004784309.1 1844992 R 743299 CDS YP_004784310.1 344199984 11042787 complement(1845920..1846447) 1 NC_015942.1 KEGG: afr:AFE_3139 hypothetical protein; hypothetical protein 1846447 11042787 Acife_1860 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784310.1 1845920 R 743299 CDS YP_004784311.1 344199985 11044349 complement(1846728..1847921) 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: afe:Lferr_2740 major facilitator superfamily protein; major facilitator superfamily protein 1847921 11044349 Acife_1861 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004784311.1 1846728 R 743299 CDS YP_004784312.1 344199986 11042788 complement(1847965..1848909) 1 NC_015942.1 TIGRFAM: Protohaem IX farnesyltransferase; HAMAP: Protohaem IX farnesyltransferase; KEGG: afr:AFE_3143 protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; protoheme IX farnesyltransferase 1848909 11042788 Acife_1862 Acidithiobacillus ferrivorans SS3 protoheme IX farnesyltransferase YP_004784312.1 1847965 R 743299 CDS YP_004784313.1 344199987 11044350 complement(1848927..1849880) 1 NC_015942.1 KEGG: afe:Lferr_2742 hypothetical protein; hypothetical protein 1849880 11044350 Acife_1863 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784313.1 1848927 R 743299 CDS YP_004784314.1 344199988 11044351 complement(1850171..1850734) 1 NC_015942.1 KEGG: afr:AFE_3146 rusticyanin; TIGRFAM: Rusticyanin; PFAM: Blue (type 1) copper domain; rusticyanin 1850734 11044351 Acife_1864 Acidithiobacillus ferrivorans SS3 rusticyanin YP_004784314.1 1850171 R 743299 CDS YP_004784315.1 344199989 11042789 complement(1850864..1851004) 1 NC_015942.1 KEGG: afe:Lferr_2744 hypothetical protein; hypothetical protein 1851004 11042789 Acife_1865 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784315.1 1850864 R 743299 CDS YP_004784316.1 344199990 11044352 complement(1851196..1851390) 1 NC_015942.1 KEGG: afr:AFE_3147 cytochrome c oxidase, aa3-type, subunit IV; cytochrome c oxidase, aa3-type subunit IV 1851390 11044352 Acife_1866 Acidithiobacillus ferrivorans SS3 cytochrome c oxidase, aa3-type subunit IV YP_004784316.1 1851196 R 743299 CDS YP_004784317.1 344199991 11042790 complement(1851430..1851984) 1 NC_015942.1 KEGG: afr:AFE_3148 cytochrome c oxidase, aa3-type, subunit III; cytochrome c oxidase, aa3-type subunit III 1851984 11042790 Acife_1867 Acidithiobacillus ferrivorans SS3 cytochrome c oxidase, aa3-type subunit III YP_004784317.1 1851430 R 743299 CDS YP_004784318.1 344199992 11042791 complement(1852003..1853886) 1 NC_015942.1 PFAM: Cytochrome c oxidase, subunit I; KEGG: afr:AFE_3149 cytochrome c oxidase, aa3-type, subunit I; cytochrome c oxidase subunit I 1853886 11042791 Acife_1868 Acidithiobacillus ferrivorans SS3 cytochrome c oxidase subunit I YP_004784318.1 1852003 R 743299 CDS YP_004784319.1 344199993 11042792 complement(1853939..1854703) 1 NC_015942.1 PFAM: Cytochrome c oxidase subunit II C-terminal; KEGG: afr:AFE_3150 cytochrome c oxidase, aa3-type, subunit II; cytochrome c oxidase subunit II 1854703 11042792 Acife_1869 Acidithiobacillus ferrivorans SS3 cytochrome c oxidase subunit II YP_004784319.1 1853939 R 743299 CDS YP_004784320.1 344199994 11042793 complement(1854718..1855269) 1 NC_015942.1 KEGG: afr:AFE_3151 hypothetical protein; hypothetical protein 1855269 11042793 Acife_1870 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784320.1 1854718 R 743299 CDS YP_004784321.1 344199995 11042794 complement(1855377..1856066) 1 NC_015942.1 PFAM: Cytochrome c, class I; KEGG: afr:AFE_3152 cytochrome c552; cytochrome c class I 1856066 11042794 Acife_1871 Acidithiobacillus ferrivorans SS3 cytochrome c class I YP_004784321.1 1855377 R 743299 CDS YP_004784322.1 344199996 11042795 complement(1856078..1857535) 1 NC_015942.1 KEGG: afr:AFE_3153 cytochrome c; cytochrome c 1857535 11042795 Acife_1872 Acidithiobacillus ferrivorans SS3 cytochrome c YP_004784322.1 1856078 R 743299 CDS YP_004784323.1 344199997 11042796 complement(1858526..1858909) 1 NC_015942.1 PFAM: Protein of unknown function DUF423; KEGG: afr:AFE_0152 hypothetical protein; hypothetical protein 1858909 11042796 Acife_1873 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784323.1 1858526 R 743299 CDS YP_004784324.1 344199998 11044353 complement(1858966..1859244) 1 NC_015942.1 KEGG: afe:Lferr_2718 hypothetical protein; hypothetical protein 1859244 11044353 Acife_1874 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784324.1 1858966 R 743299 CDS YP_004784325.1 344199999 11042797 complement(1859450..1861924) 1 NC_015942.1 KEGG: afe:Lferr_1358 hypothetical protein; HAMAP: UPF0753 protein; PFAM: Protein of unknown function DUF2309; hypothetical protein 1861924 11042797 Acife_1875 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784325.1 1859450 R 743299 CDS YP_004784326.1 344200000 11042798 complement(1861927..1863573) 1 NC_015942.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; KEGG: afr:AFE_1662 NADH dehydrogenase, putative; NADH/Ubiquinone/plastoquinone (complex I) 1863573 11042798 Acife_1876 Acidithiobacillus ferrivorans SS3 NADH/Ubiquinone/plastoquinone (complex I) YP_004784326.1 1861927 R 743299 CDS YP_004784327.1 344200001 11042799 1864046..1864315 1 NC_015942.1 KEGG: afr:AFE_1669 hypothetical protein; hypothetical protein 1864315 11042799 Acife_1877 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784327.1 1864046 D 743299 CDS YP_004784328.1 344200002 11042800 1864382..1865260 1 NC_015942.1 KEGG: afe:Lferr_1367 hypothetical protein; hypothetical protein 1865260 11042800 Acife_1878 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784328.1 1864382 D 743299 CDS YP_004784329.1 344200003 11042801 1865317..1865874 1 NC_015942.1 KEGG: afr:AFE_1671 hypothetical protein; hypothetical protein 1865874 11042801 Acife_1879 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784329.1 1865317 D 743299 CDS YP_004784330.1 344200004 11042802 1865942..1866979 1 NC_015942.1 TIGRFAM: Dihydroorotase homodimeric type; HAMAP: Dihydroorotase; KEGG: afr:AFE_1672 dihydroorotase; PFAM: Amidohydrolase 1; dihydroorotase 1866979 11042802 Acife_1880 Acidithiobacillus ferrivorans SS3 dihydroorotase YP_004784330.1 1865942 D 743299 CDS YP_004784331.1 344200005 11044354 1867062..1868735 1 NC_015942.1 TIGRFAM: Dihydroxy-acid dehydratase; HAMAP: Dihydroxy-acid dehydratase; KEGG: afe:Lferr_1370 dihydroxy-acid dehydratase; PFAM: Dihydroxy-acid/6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 1868735 11044354 Acife_1881 Acidithiobacillus ferrivorans SS3 dihydroxy-acid dehydratase YP_004784331.1 1867062 D 743299 CDS YP_004784332.1 344200006 11044355 1869252..1869800 1 NC_015942.1 KEGG: afr:AFE_1798 hypothetical protein; hypothetical protein 1869800 11044355 Acife_1883 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784332.1 1869252 D 743299 CDS YP_004784333.1 344200007 11044356 1869833..1870105 1 NC_015942.1 KEGG: afr:AFE_1795 hypothetical protein; hypothetical protein 1870105 11044356 Acife_1884 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784333.1 1869833 D 743299 CDS YP_004784334.1 344200008 11042804 1870346..1871386 1 NC_015942.1 hypothetical protein 1871386 11042804 Acife_1885 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784334.1 1870346 D 743299 CDS YP_004784335.1 344200009 11044357 complement(1871597..1872076) 1 NC_015942.1 KEGG: afr:AFE_2014 alkylhydroperoxidase AhpD family core domain protein; TIGRFAM: Alkylhydroperoxidase AhpD core; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase like protein 1872076 11044357 Acife_1886 Acidithiobacillus ferrivorans SS3 alkylhydroperoxidase like protein YP_004784335.1 1871597 R 743299 CDS YP_004784336.1 344200010 11042805 1872144..1872611 1 NC_015942.1 KEGG: afe:Lferr_1679 MarR family transcriptional regulator; PFAM: HTH transcriptional regulator, MarR; SMART: HTH transcriptional regulator, MarR; MarR family transcriptional regulator 1872611 11042805 Acife_1887 Acidithiobacillus ferrivorans SS3 MarR family transcriptional regulator YP_004784336.1 1872144 D 743299 CDS YP_004784337.1 344200011 11042806 1873218..1873460 1 NC_015942.1 hypothetical protein 1873460 11042806 Acife_1888 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784337.1 1873218 D 743299 CDS YP_004784338.1 344200012 11042807 1873872..1875002 1 NC_015942.1 PFAM: Integrase, catalytic core, phage; KEGG: dds:Ddes_0438 hypothetical protein; integrase family protein 1875002 11042807 Acife_1889 Acidithiobacillus ferrivorans SS3 integrase family protein YP_004784338.1 1873872 D 743299 CDS YP_004784339.1 344200013 11042808 complement(1874999..1876528) 1 NC_015942.1 KEGG: afr:AFE_1719 ParB family protein; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; ParB domain-containing protein nuclease 1876528 11042808 Acife_1890 Acidithiobacillus ferrivorans SS3 ParB domain-containing protein nuclease YP_004784339.1 1874999 R 743299 CDS YP_004784340.1 344200014 11042809 complement(1876525..1877343) 1 NC_015942.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: afe:Lferr_1411 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase 1877343 11042809 Acife_1891 Acidithiobacillus ferrivorans SS3 cobyrinic acid ac-diamide synthase YP_004784340.1 1876525 R 743299 CDS YP_004784341.1 344200015 11042810 complement(1877516..1877986) 1 NC_015942.1 KEGG: mei:Msip34_2899 hypothetical protein; hypothetical protein 1877986 11042810 Acife_1892 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784341.1 1877516 R 743299 CDS YP_004784342.1 344200016 11044358 complement(1878139..1878435) 1 NC_015942.1 hypothetical protein 1878435 11044358 Acife_1893 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784342.1 1878139 R 743299 CDS YP_004784343.1 344200017 11042811 complement(1878440..1879828) 1 NC_015942.1 PFAM: Bacterial conjugation TrbI-like protein; KEGG: afe:Lferr_0259 conjugation TrbI family protein; conjugation TrbI family protein 1879828 11042811 Acife_1894 Acidithiobacillus ferrivorans SS3 conjugation TrbI family protein YP_004784343.1 1878440 R 743299 CDS YP_004784344.1 344200018 11044359 complement(1879830..1880105) 1 NC_015942.1 hypothetical protein 1880105 11044359 Acife_1895 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784344.1 1879830 R 743299 CDS YP_004784345.1 344200019 11044360 complement(1880117..1881295) 1 NC_015942.1 PFAM: Conjugal transfer, TrbG/VirB9/CagX; KEGG: afe:Lferr_0257 conjugal transfer protein TrbG/VirB9/CagX; conjugal transfer protein TrbG/VirB9/CagX 1881295 11044360 Acife_1896 Acidithiobacillus ferrivorans SS3 conjugal transfer protein TrbG/VirB9/CagX YP_004784345.1 1880117 R 743299 CDS YP_004784346.1 344200020 11042812 complement(1881311..1881976) 1 NC_015942.1 KEGG: afr:AFE_1694 conjugal transfer protein; conjugal transfer protein 1881976 11042812 Acife_1897 Acidithiobacillus ferrivorans SS3 conjugal transfer protein YP_004784346.1 1881311 R 743299 CDS YP_004784347.1 344200021 11042813 complement(1882102..1883817) 1 NC_015942.1 KEGG: afe:Lferr_0251 P-type conjugative transfer protein TrbL; TIGRFAM: Conjugal transfer, TrbL; PFAM: Conjugal transfer, TrbL/VirB6; P-type conjugative transfer protein TrbL 1883817 11042813 Acife_1898 Acidithiobacillus ferrivorans SS3 P-type conjugative transfer protein TrbL YP_004784347.1 1882102 R 743299 CDS YP_004784348.1 344200022 11042814 complement(1883847..1884668) 1 NC_015942.1 TIGRFAM: P-type conjugative transfer protein TrbJ; KEGG: afr:AFE_1640 conjugal transfer protein TrbJ, putative; P-type conjugative transfer protein TrbJ 1884668 11042814 Acife_1899 Acidithiobacillus ferrivorans SS3 P-type conjugative transfer protein TrbJ YP_004784348.1 1883847 R 743299 CDS YP_004784349.1 344200023 11042815 complement(1884958..1887363) 1 NC_015942.1 TIGRFAM: Outer membrane autotransporter barrel; KEGG: hypothetical protein; outer membrane autotransporter barrel domain-containing protein 1887363 11042815 Acife_1900 Acidithiobacillus ferrivorans SS3 outer membrane autotransporter barrel domain-containing protein YP_004784349.1 1884958 R 743299 CDS YP_004784350.1 344200024 11042816 complement(1887775..1887999) 1 NC_015942.1 hypothetical protein 1887999 11042816 Acife_1901 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784350.1 1887775 R 743299 CDS YP_004784351.1 344200025 11042817 complement(1888049..1889380) 1 NC_015942.1 KEGG: hif:HIBPF05270 trimeric autotransporter adhesin; hypothetical protein 1889380 11042817 Acife_1902 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784351.1 1888049 R 743299 CDS YP_004784352.1 344200026 11044361 complement(1889421..1889687) 1 NC_015942.1 hypothetical protein 1889687 11044361 Acife_1903 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784352.1 1889421 R 743299 CDS YP_004784353.1 344200027 11042818 complement(1889881..1892433) 1 NC_015942.1 KEGG: afe:Lferr_1339 CagE TrbE VirB component of type IV transporter system; PFAM: CagE, TrbE, VirB component of type IV transporter system, conserved region; SMART: ATPase, AAA+ type, core; CagE, TrbE, VirB component of type IV transporter system 1892433 11042818 Acife_1904 Acidithiobacillus ferrivorans SS3 CagE, TrbE, VirB component of type IV transporter system YP_004784353.1 1889881 R 743299 CDS YP_004784354.1 344200028 11042819 complement(1892444..1892926) 1 NC_015942.1 hypothetical protein 1892926 11042819 Acife_1905 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784354.1 1892444 R 743299 CDS YP_004784355.1 344200029 11044362 complement(1892948..1893268) 1 NC_015942.1 KEGG: gem:GM21_2349 type IV secretory pathway VirB3 family protein; hypothetical protein 1893268 11044362 Acife_1906 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784355.1 1892948 R 743299 CDS YP_004784356.1 344200030 11042820 complement(1893272..1893673) 1 NC_015942.1 PFAM: Conjugal transfer,TrbC; KEGG: cak:Caul_5374 conjugal transfer protein TrbC; conjugal transfer protein TrbC 1893673 11042820 Acife_1907 Acidithiobacillus ferrivorans SS3 conjugal transfer protein TrbC YP_004784356.1 1893272 R 743299 CDS YP_004784357.1 344200031 11042821 complement(1893759..1893947) 1 NC_015942.1 hypothetical protein 1893947 11042821 Acife_1908 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784357.1 1893759 R 743299 CDS YP_004784358.1 344200032 11042822 complement(1894294..1895247) 1 NC_015942.1 KEGG: afe:Lferr_0244 P-type conjugative transfer ATPase TrbB; TIGRFAM: ATPase, P-type conjugative transfer, TrbB; PFAM: Type II secretion system protein E; P-type conjugative transfer ATPase TrbB 1895247 11042822 Acife_1909 Acidithiobacillus ferrivorans SS3 P-type conjugative transfer ATPase TrbB YP_004784358.1 1894294 R 743299 CDS YP_004784359.1 344200033 11042823 complement(1895355..1895801) 1 NC_015942.1 KEGG: afe:Lferr_0238 hypothetical protein; hypothetical protein 1895801 11042823 Acife_1910 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784359.1 1895355 R 743299 CDS YP_004784360.1 344200034 11042824 complement(1895788..1896045) 1 NC_015942.1 hypothetical protein 1896045 11042824 Acife_1911 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784360.1 1895788 R 743299 CDS YP_004784361.1 344200035 11042825 complement(1896042..1897892) 1 NC_015942.1 TIGRFAM: DNA topoisomerase III, bacterial-type; PFAM: DNA topoisomerase, type IA, central; Toprim domain; KEGG: afe:Lferr_0283 DNA topoisomerase III; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; DNA topoisomerase III 1897892 11042825 Acife_1912 Acidithiobacillus ferrivorans SS3 DNA topoisomerase III YP_004784361.1 1896042 R 743299 CDS YP_004784362.1 344200036 11044363 complement(1897971..1898351) 1 NC_015942.1 hypothetical protein 1898351 11044363 Acife_1913 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784362.1 1897971 R 743299 CDS YP_004784363.1 344200037 11042826 complement(1898720..1900459) 1 NC_015942.1 PFAM: RNA polymerase sigma-70 region 4; sigma-70 region 4 domain-containing protein 1900459 11042826 Acife_1914 Acidithiobacillus ferrivorans SS3 sigma-70 region 4 domain-containing protein YP_004784363.1 1898720 R 743299 CDS YP_004784364.1 344200038 11044364 complement(1900973..1901773) 1 NC_015942.1 KEGG: afr:AFE_0416 pilin, putative; hypothetical protein 1901773 11044364 Acife_1915 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784364.1 1900973 R 743299 CDS YP_004784365.1 344200039 11044365 complement(1901866..1902156) 1 NC_015942.1 hypothetical protein 1902156 11044365 Acife_1916 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784365.1 1901866 R 743299 CDS YP_004784366.1 344200040 11042827 complement(1902289..1902600) 1 NC_015942.1 hypothetical protein 1902600 11042827 Acife_1917 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784366.1 1902289 R 743299 CDS YP_004784367.1 344200041 11042828 complement(1902921..1903277) 1 NC_015942.1 hypothetical protein 1903277 11042828 Acife_1918 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784367.1 1902921 R 743299 CDS YP_004784368.1 344200042 11042829 complement(1903380..1906070) 1 NC_015942.1 KEGG: rcu:RCOM_1784370 DNA polymerase I, putative; PFAM: DNA-directed DNA polymerase, family A, palm domain; SMART: DNA-directed DNA polymerase, family A, palm domain; DNA-directed DNA polymerase 1906070 11042829 Acife_1919 Acidithiobacillus ferrivorans SS3 DNA-directed DNA polymerase YP_004784368.1 1903380 R 743299 CDS YP_004784369.1 344200043 11042830 complement(1906311..1909079) 1 NC_015942.1 KEGG: bug:BC1001_1781 toprim sub domain-containing protein; hypothetical protein 1909079 11042830 Acife_1920 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784369.1 1906311 R 743299 CDS YP_004784370.1 344200044 11042831 complement(1909841..1910065) 1 NC_015942.1 hypothetical protein 1910065 11042831 Acife_1921 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784370.1 1909841 R 743299 CDS YP_004784371.1 344200045 11044366 1910239..1910685 1 NC_015942.1 hypothetical protein 1910685 11044366 Acife_1922 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784371.1 1910239 D 743299 CDS YP_004784372.1 344200046 11042832 complement(1911276..1911629) 1 NC_015942.1 PFAM: PemK-like protein; KEGG: bug:BC1001_3350 PemK family protein; PemK family protein 1911629 11042832 Acife_1923 Acidithiobacillus ferrivorans SS3 PemK family protein YP_004784372.1 1911276 R 743299 CDS YP_004784373.1 344200047 11042833 complement(1911626..1911895) 1 NC_015942.1 PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: bug:BC1001_3349 SpoVT/AbrB domain-containing protein; SpoVT/AbrB domain-containing protein 1911895 11042833 Acife_1924 Acidithiobacillus ferrivorans SS3 SpoVT/AbrB domain-containing protein YP_004784373.1 1911626 R 743299 CDS YP_004784374.1 344200048 11042834 complement(1912225..1912731) 1 NC_015942.1 KEGG: pla:Plav_2323 hypothetical protein; hypothetical protein 1912731 11042834 Acife_1925 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784374.1 1912225 R 743299 CDS YP_004784375.1 344200049 11044367 1912902..1913186 1 NC_015942.1 hypothetical protein 1913186 11044367 Acife_1926 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784375.1 1912902 D 743299 CDS YP_004784376.1 344200050 11042835 1913286..1913540 1 NC_015942.1 hypothetical protein 1913540 11042835 Acife_1927 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784376.1 1913286 D 743299 CDS YP_004784377.1 344200051 11042836 complement(1913484..1913750) 1 NC_015942.1 hypothetical protein 1913750 11042836 Acife_1928 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784377.1 1913484 R 743299 CDS YP_004784378.1 344200052 11044368 1913855..1914316 1 NC_015942.1 hypothetical protein 1914316 11044368 Acife_1929 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784378.1 1913855 D 743299 CDS YP_004784379.1 344200053 11042837 complement(1914363..1915361) 1 NC_015942.1 PFAM: Phosphoadenosine phosphosulphate reductase; KEGG: vei:Veis_3757 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase 1915361 11042837 Acife_1930 Acidithiobacillus ferrivorans SS3 phosphoadenosine phosphosulfate reductase YP_004784379.1 1914363 R 743299 CDS YP_004784380.1 344200054 11042838 1915628..1917277 1 NC_015942.1 KEGG: afe:Lferr_0242 type IV secretory pathway VirD2 pilin (relaxase)-like protein; type IV secretory pathway VirD2 pilin (relaxase)-like protein 1917277 11042838 Acife_1931 Acidithiobacillus ferrivorans SS3 type IV secretory pathway VirD2 pilin (relaxase)-like protein YP_004784380.1 1915628 D 743299 CDS YP_004784381.1 344200055 11044369 1917346..1917723 1 NC_015942.1 hypothetical protein 1917723 11044369 Acife_1932 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784381.1 1917346 D 743299 CDS YP_004784382.1 344200056 11042839 1917893..1918186 1 NC_015942.1 hypothetical protein 1918186 11042839 Acife_1933 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784382.1 1917893 D 743299 CDS YP_004784383.1 344200057 11042840 1918230..1918595 1 NC_015942.1 PFAM: Rickettsia 17kDa surface antigen; KEGG: afr:AFE_1234 lipoprotein, putative; 17 kDa surface antigen 1918595 11042840 Acife_1934 Acidithiobacillus ferrivorans SS3 17 kDa surface antigen YP_004784383.1 1918230 D 743299 CDS YP_004784384.1 344200058 11042841 1918610..1918771 1 NC_015942.1 hypothetical protein 1918771 11042841 Acife_1935 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784384.1 1918610 D 743299 CDS YP_004784385.1 344200059 11042842 1918774..1919244 1 NC_015942.1 KEGG: afe:Lferr_1333 hypothetical protein; hypothetical protein 1919244 11042842 Acife_1936 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784385.1 1918774 D 743299 CDS YP_004784386.1 344200060 11042843 1919310..1920626 1 NC_015942.1 hypothetical protein 1920626 11042843 Acife_1937 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784386.1 1919310 D 743299 CDS YP_004784387.1 344200061 11042844 1920693..1923122 1 NC_015942.1 PFAM: Domain of unknown function DUF1738; KEGG: afe:Lferr_0235 hypothetical protein; hypothetical protein 1923122 11042844 Acife_1938 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784387.1 1920693 D 743299 CDS YP_004784388.1 344200062 11044370 1923125..1924228 1 NC_015942.1 KEGG: sma:SAV_4852 putative oxidoreductase/heat repeat-containing protein; hypothetical protein 1924228 11044370 Acife_1939 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784388.1 1923125 D 743299 CDS YP_004784389.1 344200063 11042845 1924225..1925775 1 NC_015942.1 hypothetical protein 1925775 11042845 Acife_1940 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784389.1 1924225 D 743299 CDS YP_004784390.1 344200064 11042846 1925874..1926473 1 NC_015942.1 PFAM: Peptidase S26, conserved region; KEGG: afr:AFE_1726 conjugal transfer protein TraF, putative; peptidase S26 1926473 11042846 Acife_1941 Acidithiobacillus ferrivorans SS3 peptidase S26 YP_004784390.1 1925874 D 743299 CDS YP_004784391.1 344200065 11044371 1926470..1927042 1 NC_015942.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: afr:AFE_1698 conjugal transfer -like protein; lytic transglycosylase 1927042 11044371 Acife_1942 Acidithiobacillus ferrivorans SS3 lytic transglycosylase YP_004784391.1 1926470 D 743299 CDS YP_004784392.1 344200066 11042847 1927067..1927618 1 NC_015942.1 hypothetical protein 1927618 11042847 Acife_1943 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784392.1 1927067 D 743299 CDS YP_004784393.1 344200067 11042848 1927743..1928126 1 NC_015942.1 KEGG: tkm:TK90_2739 hypothetical protein; hypothetical protein 1928126 11042848 Acife_1944 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784393.1 1927743 D 743299 CDS YP_004784394.1 344200068 11044372 1928149..1929345 1 NC_015942.1 KEGG: tin:Tint_2014 TraB family protein; TraB family protein 1929345 11044372 Acife_1945 Acidithiobacillus ferrivorans SS3 TraB family protein YP_004784394.1 1928149 D 743299 CDS YP_004784395.1 344200069 11042849 complement(1929364..1930158) 1 NC_015942.1 KEGG: bch:Bcen2424_6894 hypothetical protein; hypothetical protein 1930158 11042849 Acife_1946 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784395.1 1929364 R 743299 CDS YP_004784396.1 344200070 11042850 complement(1930189..1931313) 1 NC_015942.1 KEGG: xau:Xaut_0681 hypothetical protein; hypothetical protein 1931313 11042850 Acife_1947 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784396.1 1930189 R 743299 CDS YP_004784397.1 344200071 11044373 complement(1931310..1934336) 1 NC_015942.1 PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: dly:Dehly_1610 type III site-specific deoxyribonuclease; type III restriction protein res subunit 1934336 11044373 Acife_1948 Acidithiobacillus ferrivorans SS3 type III restriction protein res subunit YP_004784397.1 1931310 R 743299 CDS YP_004784398.1 344200072 11042851 complement(1934342..1936249) 1 NC_015942.1 PFAM: DNA methylase N-4/N-6; KEGG: dly:Dehly_1612 adenine-specific DNA-methyltransferase; DNA methylase N-4/N-6 domain-containing protein 1936249 11042851 Acife_1949 Acidithiobacillus ferrivorans SS3 DNA methylase N-4/N-6 domain-containing protein YP_004784398.1 1934342 R 743299 CDS YP_004784399.1 344200073 11042852 complement(1936331..1937449) 1 NC_015942.1 KEGG: slt:Slit_1103 hypothetical protein; hypothetical protein 1937449 11042852 Acife_1950 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784399.1 1936331 R 743299 CDS YP_004784400.1 344200074 11044374 complement(1937478..1938242) 1 NC_015942.1 KEGG: shn:Shewana3_2957 HNH endonuclease; HNH endonuclease 1938242 11044374 Acife_1951 Acidithiobacillus ferrivorans SS3 HNH endonuclease YP_004784400.1 1937478 R 743299 CDS YP_004784401.1 344200075 11042853 complement(1938260..1938730) 1 NC_015942.1 KEGG: cpc:Cpar_0774 hypothetical protein; hypothetical protein 1938730 11042853 Acife_1952 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784401.1 1938260 R 743299 CDS YP_004784402.1 344200076 11042854 complement(1938731..1941658) 1 NC_015942.1 KEGG: msl:Msil_1945 helicase domain protein; PFAM: SNF2-related; TT viral ORF2 protein; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; SNF2-like protein 1941658 11042854 Acife_1953 Acidithiobacillus ferrivorans SS3 SNF2-like protein YP_004784402.1 1938731 R 743299 CDS YP_004784403.1 344200077 11044375 complement(1941691..1942791) 1 NC_015942.1 PFAM: GTP-binding protein, HSR1-related; KEGG: gym:GYMC10_6289 small GTP-binding protein; GTP-binding protein HSR1-like protein 1942791 11044375 Acife_1954 Acidithiobacillus ferrivorans SS3 GTP-binding protein HSR1-like protein YP_004784403.1 1941691 R 743299 CDS YP_004784404.1 344200078 11042855 complement(1943223..1943762) 1 NC_015942.1 hypothetical protein 1943762 11042855 Acife_1955 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784404.1 1943223 R 743299 CDS YP_004784405.1 344200079 11042856 complement(1943813..1944100) 1 NC_015942.1 KEGG: afr:AFE_1070 DNA-binding protein, HU family; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 1944100 11042856 Acife_1956 Acidithiobacillus ferrivorans SS3 histone family protein DNA-binding protein YP_004784405.1 1943813 R 743299 CDS YP_004784406.1 344200080 11042857 complement(1944730..1944870) 1 NC_015942.1 hypothetical protein 1944870 11042857 Acife_1958 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784406.1 1944730 R 743299 CDS YP_004784407.1 344200081 11042858 complement(1944903..1945130) 1 NC_015942.1 hypothetical protein 1945130 11042858 Acife_1959 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784407.1 1944903 R 743299 CDS YP_004784408.1 344200082 11044377 complement(1945279..1945635) 1 NC_015942.1 KEGG: afr:AFE_1585 hypothetical protein; hypothetical protein 1945635 11044377 Acife_1960 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784408.1 1945279 R 743299 CDS YP_004784409.1 344200083 11042859 complement(1945647..1945769) 1 NC_015942.1 PFAM: Histone-like bacterial DNA-binding protein; KEGG: afr:AFE_1584 DNA-binding protein HU family protein; histone family protein DNA-binding protein 1945769 11042859 Acife_1961 Acidithiobacillus ferrivorans SS3 histone family protein DNA-binding protein YP_004784409.1 1945647 R 743299 CDS YP_004784410.1 344200084 11042860 complement(1945848..1946174) 1 NC_015942.1 KEGG: afr:AFE_1070 DNA-binding protein, HU family; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 1946174 11042860 Acife_1962 Acidithiobacillus ferrivorans SS3 histone family protein DNA-binding protein YP_004784410.1 1945848 R 743299 CDS YP_004784411.1 344200085 11042861 complement(1946623..1946901) 1 NC_015942.1 PFAM: CopG-like DNA-binding; KEGG: xfa:XF2075 hypothetical protein; CopG family transcriptional regulator 1946901 11042861 Acife_1964 Acidithiobacillus ferrivorans SS3 CopG family transcriptional regulator YP_004784411.1 1946623 R 743299 CDS YP_004784412.1 344200086 11042862 complement(1947258..1948580) 1 NC_015942.1 KEGG: apt:APA01_21560 outer membrane protein; hypothetical protein 1948580 11042862 Acife_1965 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784412.1 1947258 R 743299 CDS YP_004784413.1 344200087 11042863 complement(1948562..1949293) 1 NC_015942.1 hypothetical protein 1949293 11042863 Acife_1966 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784413.1 1948562 R 743299 CDS YP_004784414.1 344200088 11042864 complement(1949290..1949721) 1 NC_015942.1 hypothetical protein 1949721 11042864 Acife_1967 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784414.1 1949290 R 743299 CDS YP_004784415.1 344200089 11044379 complement(1949693..1950151) 1 NC_015942.1 hypothetical protein 1950151 11044379 Acife_1968 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784415.1 1949693 R 743299 CDS YP_004784416.1 344200090 11042865 complement(1950141..1951400) 1 NC_015942.1 PFAM: Type II secretion system F domain; KEGG: afr:AFE_0972 type IV pilus biogenesis protein PilC; type II secretion system F domain-containing protein 1951400 11042865 Acife_1969 Acidithiobacillus ferrivorans SS3 type II secretion system F domain-containing protein YP_004784416.1 1950141 R 743299 CDS YP_004784417.1 344200091 11042866 complement(1951480..1951665) 1 NC_015942.1 hypothetical protein 1951665 11042866 Acife_1970 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784417.1 1951480 R 743299 CDS YP_004784418.1 344200092 11044380 complement(1951847..1953010) 1 NC_015942.1 KEGG: afr:AFE_1215 ISAfe8, transposase; TIGRFAM: Transposase, IS605 OrfB, C-terminal; PFAM: Transposase, probable, IS891/IS1136/IS1341; Transposase, IS605 OrfB, C-terminal; transposase, IS605 OrfB family 1953010 11044380 Acife_1971 Acidithiobacillus ferrivorans SS3 transposase, IS605 OrfB family YP_004784418.1 1951847 R 743299 CDS YP_004784419.1 344200093 11042867 complement(1953116..1953328) 1 NC_015942.1 KEGG: afr:AFE_0418 hypothetical protein; hypothetical protein 1953328 11042867 Acife_1972 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784419.1 1953116 R 743299 CDS YP_004784420.1 344200094 11042868 complement(1953325..1953942) 1 NC_015942.1 hypothetical protein 1953942 11042868 Acife_1973 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784420.1 1953325 R 743299 CDS YP_004784421.1 344200095 11044381 complement(1953966..1954157) 1 NC_015942.1 hypothetical protein 1954157 11044381 Acife_1974 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784421.1 1953966 R 743299 CDS YP_004784422.1 344200096 11042869 complement(1954173..1954601) 1 NC_015942.1 hypothetical protein 1954601 11042869 Acife_1975 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784422.1 1954173 R 743299 CDS YP_004784423.1 344200097 11042870 complement(1954736..1955350) 1 NC_015942.1 KEGG: afr:AFE_0416 pilin, putative; pilin 1955350 11042870 Acife_1976 Acidithiobacillus ferrivorans SS3 pilin YP_004784423.1 1954736 R 743299 CDS YP_004784424.1 344200098 11042871 1955841..1956290 1 NC_015942.1 PFAM: Sel1-like; KEGG: afr:AFE_0409 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 1956290 11042871 Acife_1977 Acidithiobacillus ferrivorans SS3 Sel1 domain-containing protein repeat-containing protein YP_004784424.1 1955841 D 743299 CDS YP_004784425.1 344200099 11042873 complement(1956557..1957771) 1 NC_015942.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: cph:Cpha266_2270 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 1957771 11042873 Acife_1979 Acidithiobacillus ferrivorans SS3 transposase IS204/IS1001/IS1096/IS1165 family protein YP_004784425.1 1956557 R 743299 CDS YP_004784426.1 344200100 11042874 1958231..1958482 1 NC_015942.1 hypothetical protein 1958482 11042874 Acife_1980 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784426.1 1958231 D 743299 CDS YP_004784427.1 344200101 11042875 complement(1958876..1960432) 1 NC_015942.1 PFAM: Transposase, IS66; KEGG: eba:ebA859 transposase; transposase IS66 1960432 11042875 Acife_1981 Acidithiobacillus ferrivorans SS3 transposase IS66 YP_004784427.1 1958876 R 743299 CDS YP_004784428.1 344200102 11042876 complement(1960387..1960590) 1 NC_015942.1 hypothetical protein 1960590 11042876 Acife_1982 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784428.1 1960387 R 743299 CDS YP_004784429.1 344200103 11044382 complement(1960580..1960930) 1 NC_015942.1 PFAM: Transposase (putative), IS66 Orf2 like; KEGG: eba:ebB23 transpoase helper protein; IS66 Orf2 family protein 1960930 11044382 Acife_1983 Acidithiobacillus ferrivorans SS3 IS66 Orf2 family protein YP_004784429.1 1960580 R 743299 CDS YP_004784430.1 344200104 11042877 complement(1960930..1961292) 1 NC_015942.1 KEGG: eba:ebD29 hypothetical protein; hypothetical protein 1961292 11042877 Acife_1984 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784430.1 1960930 R 743299 CDS YP_004784431.1 344200105 11042878 complement(1961366..1962418) 1 NC_015942.1 KEGG: gpb:HDN1F_00180 hypothetical protein; hypothetical protein 1962418 11042878 Acife_1985 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784431.1 1961366 R 743299 CDS YP_004784432.1 344200106 11042879 complement(1962441..1962896) 1 NC_015942.1 SMART: Phospholipid/glycerol acyltransferase; KEGG: afe:Lferr_1301 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1962896 11042879 Acife_1986 Acidithiobacillus ferrivorans SS3 phospholipid/glycerol acyltransferase YP_004784432.1 1962441 R 743299 CDS YP_004784433.1 344200107 11042880 complement(1962893..1964386) 1 NC_015942.1 hypothetical protein 1964386 11042880 Acife_1987 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784433.1 1962893 R 743299 CDS YP_004784434.1 344200108 11042881 complement(1964405..1965160) 1 NC_015942.1 hypothetical protein 1965160 11042881 Acife_1988 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784434.1 1964405 R 743299 CDS YP_004784435.1 344200109 11042882 complement(1965264..1965551) 1 NC_015942.1 hypothetical protein 1965551 11042882 Acife_1989 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784435.1 1965264 R 743299 CDS YP_004784436.1 344200110 11042883 complement(1965686..1968181) 1 NC_015942.1 PFAM: TRAG protein; KEGG: hna:Hneap_1649 TraG family protein; TRAG family protein 1968181 11042883 Acife_1990 Acidithiobacillus ferrivorans SS3 TRAG family protein YP_004784436.1 1965686 R 743299 CDS YP_004784437.1 344200111 11044383 complement(1968224..1968586) 1 NC_015942.1 KEGG: aav:Aave_0391 hypothetical protein; hypothetical protein 1968586 11044383 Acife_1991 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784437.1 1968224 R 743299 CDS YP_004784438.1 344200112 11042884 complement(1968868..1969284) 1 NC_015942.1 hypothetical protein 1969284 11042884 Acife_1992 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784438.1 1968868 R 743299 CDS YP_004784439.1 344200113 11042885 complement(1969537..1970214) 1 NC_015942.1 KEGG: dds:Ddes_1577 ParB domain protein nuclease; PFAM: ParB-like nuclease; SMART: ParB-like nuclease; ParB domain-containing protein nuclease 1970214 11042885 Acife_1993 Acidithiobacillus ferrivorans SS3 ParB domain-containing protein nuclease YP_004784439.1 1969537 R 743299 CDS YP_004784440.1 344200114 11044384 complement(1970217..1970639) 1 NC_015942.1 hypothetical protein 1970639 11044384 Acife_1994 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784440.1 1970217 R 743299 CDS YP_004784441.1 344200115 11042886 complement(1970745..1971965) 1 NC_015942.1 PFAM: Phosphoadenosine phosphosulphate reductase; KEGG: dds:Ddes_1579 phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase 1971965 11042886 Acife_1995 Acidithiobacillus ferrivorans SS3 phosphoadenosine phosphosulfate reductase YP_004784441.1 1970745 R 743299 CDS YP_004784442.1 344200116 11042887 complement(1972078..1973523) 1 NC_015942.1 KEGG: aoe:Clos_1290 helicase domain-containing protein; PFAM: DNA/RNA helicase, C-terminal; SNF2-related; SMART: DNA/RNA helicase, C-terminal; DEAD-like helicase, N-terminal; helicase domain-containing protein 1973523 11042887 Acife_1996 Acidithiobacillus ferrivorans SS3 helicase domain-containing protein YP_004784442.1 1972078 R 743299 CDS YP_004784443.1 344200117 11044385 complement(1973501..1974505) 1 NC_015942.1 hypothetical protein 1974505 11044385 Acife_1997 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784443.1 1973501 R 743299 CDS YP_004784444.1 344200118 11042889 1975162..1975740 1 NC_015942.1 PFAM: NLP/P60; KEGG: afr:AFE_1828 lipoprotein, NLP/P60 family; NLP/P60 protein 1975740 11042889 Acife_1998 Acidithiobacillus ferrivorans SS3 NLP/P60 protein YP_004784444.1 1975162 D 743299 CDS YP_004784445.1 344200119 11042890 1975780..1976946 1 NC_015942.1 KEGG: afr:AFE_1827 membrane-bound lytic murein transglycosylase B, putative; membrane-bound lytic murein transglycosylase B 1976946 11042890 Acife_1999 Acidithiobacillus ferrivorans SS3 membrane-bound lytic murein transglycosylase B YP_004784445.1 1975780 D 743299 CDS YP_004784446.1 344200120 11042891 1977043..1978389 1 NC_015942.1 KEGG: afr:AFE_1826 amidohydrolase family protein; HAMAP: 5-methylthioadenosine/S-adenosylhomocysteine deaminase; PFAM: Amidohydrolase 1; 5-methylthioadenosine/S-adenosylhomocysteine deaminase 1978389 11042891 Acife_2000 Acidithiobacillus ferrivorans SS3 5-methylthioadenosine/S-adenosylhomocysteine deaminase YP_004784446.1 1977043 D 743299 CDS YP_004784447.1 344200121 11042892 1978386..1979093 1 NC_015942.1 TIGRFAM: Ubiquinone biosynthesis O-methyltransferase; HAMAP: 3-demethylubiquinone-9 3-methyltransferase; KEGG: afr:AFE_1825 3-demethylubiquinone-9 3-methyltransferase; PFAM: Methyltransferase type 11; 3-demethylubiquinone-9 3-methyltransferase 1979093 11042892 Acife_2001 Acidithiobacillus ferrivorans SS3 3-demethylubiquinone-9 3-methyltransferase YP_004784447.1 1978386 D 743299 CDS YP_004784448.1 344200122 11042893 1979065..1979760 1 NC_015942.1 KEGG: afr:AFE_1823 phosphoglycolate phosphatase; TIGRFAM: 2-phosphoglycolate phosphatase, prokaryotic; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase-like hydrolase; phosphoglycolate phosphatase 1979760 11042893 Acife_2002 Acidithiobacillus ferrivorans SS3 phosphoglycolate phosphatase YP_004784448.1 1979065 D 743299 CDS YP_004784449.1 344200123 11042894 complement(1979722..1980780) 1 NC_015942.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: afr:AFE_1824 hypothetical protein; hypothetical protein 1980780 11042894 Acife_2003 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784449.1 1979722 R 743299 CDS YP_004784450.1 344200124 11042895 1980827..1982023 1 NC_015942.1 KEGG: afr:AFE_1821 aminotransferase, classes I and II; TIGRFAM: Succinyldiaminopimelate transaminase, beta/gammaproteobacteria; PFAM: Aminotransferase, class I/II; succinyldiaminopimelate transaminase 1982023 11042895 Acife_2004 Acidithiobacillus ferrivorans SS3 succinyldiaminopimelate transaminase YP_004784450.1 1980827 D 743299 CDS YP_004784451.1 344200125 11044386 1982047..1982871 1 NC_015942.1 TIGRFAM: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; HAMAP: 2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase; KEGG: afr:AFE_1820 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; PFAM: Bacterial transferase hexapeptide repeat; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 1982871 11044386 Acife_2005 Acidithiobacillus ferrivorans SS3 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase YP_004784451.1 1982047 D 743299 CDS YP_004784452.1 344200126 11042896 1982884..1984032 1 NC_015942.1 TIGRFAM: Succinyl-diaminopimelate desuccinylase, proteobacteria; HAMAP: Succinyl-diaminopimelate desuccinylase, proteobacteria; KEGG: afr:AFE_1819 succinyl-diaminopimelate desuccinylase; PFAM: Peptidase M20; Peptidase M20, dimerisation; succinyl-diaminopimelate desuccinylase 1984032 11042896 Acife_2006 Acidithiobacillus ferrivorans SS3 succinyl-diaminopimelate desuccinylase YP_004784452.1 1982884 D 743299 CDS YP_004784453.1 344200127 11042897 1984022..1984846 1 NC_015942.1 KEGG: afr:AFE_1818 rare lipoprotein A, putative; TIGRFAM: Rare lipoprotein A, bacterial; PFAM: Rare lipoprotein A; Sporulation/cell division region, bacteria; rare lipoprotein A 1984846 11042897 Acife_2007 Acidithiobacillus ferrivorans SS3 rare lipoprotein A YP_004784453.1 1984022 D 743299 CDS YP_004784454.1 344200128 11042898 1984859..1985821 1 NC_015942.1 PFAM: Sulfotransferase; KEGG: afr:AFE_1817 sulfotransferase domain protein; sulfotransferase 1985821 11042898 Acife_2008 Acidithiobacillus ferrivorans SS3 sulfotransferase YP_004784454.1 1984859 D 743299 CDS YP_004784455.1 344200129 11042899 1985919..1988330 1 NC_015942.1 KEGG: afr:AFE_1816 phosphoenolpyruvate synthase; TIGRFAM: Phosphoenolpyruvate synthase; PFAM: Pyruvate phosphate dikinase, PEP/pyruvate-binding; PEP-utilising enzyme, mobile region; PEP-utilising enzyme; phosphoenolpyruvate synthase 1988330 11042899 Acife_2009 Acidithiobacillus ferrivorans SS3 phosphoenolpyruvate synthase YP_004784455.1 1985919 D 743299 CDS YP_004784456.1 344200130 11044387 1988327..1989850 1 NC_015942.1 TIGRFAM: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; HAMAP: Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent; KEGG: afr:AFE_1815 phosphoglyceromutase; PFAM: BPG-independent PGAM, N-terminal; Metalloenzyme; 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 1989850 11044387 Acife_2010 Acidithiobacillus ferrivorans SS3 2,3-bisphosphoglycerate-independent phosphoglycerate mutase YP_004784456.1 1988327 D 743299 CDS YP_004784457.1 344200131 11044388 1989895..1990869 1 NC_015942.1 PFAM: 2-oxoacid dehydrogenase acyltransferase, catalytic domain; Biotin/lipoyl attachment; KEGG: afr:AFE_1811 2-oxo acid dehydrogenase, acyltransferase, putative; hypothetical protein 1990869 11044388 Acife_2011 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784457.1 1989895 D 743299 CDS YP_004784458.1 344200132 11042900 1990866..1992056 1 NC_015942.1 TIGRFAM: Acetate kinase; HAMAP: Acetate kinase; KEGG: afr:AFE_1810 acetate kinase; PFAM: Acetate/butyrate kinase; acetate kinase 1992056 11042900 Acife_2012 Acidithiobacillus ferrivorans SS3 acetate kinase YP_004784458.1 1990866 D 743299 CDS YP_004784459.1 344200133 11044389 1992053..1993546 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_1809 major facilitator family protein; major facilitator superfamily protein 1993546 11044389 Acife_2013 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004784459.1 1992053 D 743299 CDS YP_004784460.1 344200134 11042901 1993571..1994494 1 NC_015942.1 PFAM: Phosphate acetyl/butaryl transferase; KEGG: afr:AFE_1808 phosphate acetyl/butyryl transferase; phosphate acetyl/butaryl transferase 1994494 11042901 Acife_2014 Acidithiobacillus ferrivorans SS3 phosphate acetyl/butaryl transferase YP_004784460.1 1993571 D 743299 CDS YP_004784461.1 344200135 11042902 1994491..1995450 1 NC_015942.1 KEGG: afr:AFE_1807 carbohydrate kinase, PfkB family; TIGRFAM: 1-phosphofructokinase; PFAM: Carbohydrate/purine kinase; 1-phosphofructokinase 1995450 11042902 Acife_2015 Acidithiobacillus ferrivorans SS3 1-phosphofructokinase YP_004784461.1 1994491 D 743299 CDS YP_004784462.1 344200136 11042903 complement(1995576..1996025) 1 NC_015942.1 KEGG: afe:Lferr_1481 hypothetical protein; hypothetical protein 1996025 11042903 Acife_2016 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784462.1 1995576 R 743299 CDS YP_004784463.1 344200137 11044390 1996516..1997913 1 NC_015942.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: afr:AFE_1803 pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1997913 11044390 Acife_2017 Acidithiobacillus ferrivorans SS3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004784463.1 1996516 D 743299 CDS YP_004784464.1 344200138 11042904 1997906..1998826 1 NC_015942.1 PFAM: Deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase; KEGG: afr:AFE_1802 aldolase; deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase 1998826 11042904 Acife_2018 Acidithiobacillus ferrivorans SS3 deoxyribose-phosphate aldolase/phospho-2-dehydro-3-deoxyheptonate aldolase YP_004784464.1 1997906 D 743299 CDS YP_004784465.1 344200139 11042905 1998823..1999131 1 NC_015942.1 PFAM: Pyruvate kinase, barrel; Enolase, C-terminal; KEGG: afe:Lferr_1478 pyruvate kinase; pyruvate kinase 1999131 11042905 Acife_2019 Acidithiobacillus ferrivorans SS3 pyruvate kinase YP_004784465.1 1998823 D 743299 CDS YP_004784466.1 344200140 11042906 1999145..2001670 1 NC_015942.1 KEGG: afr:AFE_1799 alpha-glucan phosphorylase family protein; TIGRFAM: Alpha-glucan phosphorylase; PFAM: Glycosyl transferase, family 35; alpha-glucan phosphorylase 2001670 11042906 Acife_2020 Acidithiobacillus ferrivorans SS3 alpha-glucan phosphorylase YP_004784466.1 1999145 D 743299 CDS YP_004784467.1 344200141 11042907 2001683..2002240 1 NC_015942.1 KEGG: afr:AFE_1798 hypothetical protein; hypothetical protein 2002240 11042907 Acife_2021 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784467.1 2001683 D 743299 CDS YP_004784468.1 344200142 11042908 2002332..2002988 1 NC_015942.1 PFAM: Phosphoribosyltransferase; KEGG: afr:AFE_3103 phosphoribosyl transferase domain protein; phosphoribosyltransferase 2002988 11042908 Acife_2022 Acidithiobacillus ferrivorans SS3 phosphoribosyltransferase YP_004784468.1 2002332 D 743299 CDS YP_004784469.1 344200143 11042909 2002998..2003300 1 NC_015942.1 hypothetical protein 2003300 11042909 Acife_2023 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784469.1 2002998 D 743299 CDS YP_004784470.1 344200144 11044391 complement(2003331..2003684) 1 NC_015942.1 KEGG: afr:AFE_2085 hypothetical protein; hypothetical protein 2003684 11044391 Acife_2024 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784470.1 2003331 R 743299 CDS YP_004784471.1 344200145 11042910 2003790..2004050 1 NC_015942.1 PFAM: Transglycosylase-associated protein; KEGG: afe:Lferr_1472 transglycosylase-associated protein; transglycosylase-associated protein 2004050 11042910 Acife_2025 Acidithiobacillus ferrivorans SS3 transglycosylase-associated protein YP_004784471.1 2003790 D 743299 CDS YP_004784472.1 344200146 11044392 complement(2004068..2004769) 1 NC_015942.1 KEGG: afr:AFE_1794 base excision repair protein, HhH-GPD family; PFAM: HhH-GPD domain; SMART: HhH-GPD domain; HhH-GPD family protein 2004769 11044392 Acife_2026 Acidithiobacillus ferrivorans SS3 HhH-GPD family protein YP_004784472.1 2004068 R 743299 CDS YP_004784473.1 344200147 11044393 complement(2004779..2005654) 1 NC_015942.1 TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: RNA-binding S4; Pseudouridine synthase, RsuA and RluB/C/D/E/F; KEGG: afr:AFE_1793 ribosomal large subunit pseudouridine synthase B; SMART: RNA-binding S4; pseudouridine synthase Rsu 2005654 11044393 Acife_2027 Acidithiobacillus ferrivorans SS3 pseudouridine synthase Rsu YP_004784473.1 2004779 R 743299 CDS YP_004784474.1 344200148 11042911 complement(2005781..2007085) 1 NC_015942.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afr:AFE_1792 sulfide-quinone reductase, putative; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2007085 11042911 Acife_2028 Acidithiobacillus ferrivorans SS3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004784474.1 2005781 R 743299 CDS YP_004784475.1 344200149 11042912 complement(2007276..2007779) 1 NC_015942.1 PFAM: Chromosome segregation/condensation protein ScpB, prokaryote; KEGG: afr:AFE_1791 segregation and condensation protein B; chromosome segregation and condensation protein ScpB 2007779 11042912 Acife_2029 Acidithiobacillus ferrivorans SS3 chromosome segregation and condensation protein ScpB YP_004784475.1 2007276 R 743299 CDS YP_004784476.1 344200150 11042913 complement(2007772..2008611) 1 NC_015942.1 KEGG: afr:AFE_1790 segregation and condensation protein A; manually curated; PFAM: Prokaryotic chromosome segregation/condensation protein ScpA; chromosome segregation and condensation protein ScpA 2008611 11042913 Acife_2030 Acidithiobacillus ferrivorans SS3 chromosome segregation and condensation protein ScpA YP_004784476.1 2007772 R 743299 CDS YP_004784477.1 344200151 11042914 complement(2008592..2009803) 1 NC_015942.1 KEGG: afr:AFE_1789 tryptophanyl-tRNA synthetase; TIGRFAM: Tryptophanyl-tRNA synthetase, class Ib; PFAM: Aminoacyl-tRNA synthetase, class Ib; tryptophanyl-tRNA synthetase 2009803 11042914 Acife_2031 Acidithiobacillus ferrivorans SS3 tryptophanyl-tRNA synthetase YP_004784477.1 2008592 R 743299 CDS YP_004784478.1 344200152 11042915 complement(2009803..2010462) 1 NC_015942.1 PFAM: Peptidase M50; KEGG: afr:AFE_1788 membrane-associated zinc metalloprotease, putative; peptidase M50 2010462 11042915 Acife_2032 Acidithiobacillus ferrivorans SS3 peptidase M50 YP_004784478.1 2009803 R 743299 CDS YP_004784479.1 344200153 11044394 complement(2010496..2011149) 1 NC_015942.1 KEGG: afr:AFE_1787 SUA5/YciO/YrdC/YwlC family protein; TIGRFAM: Sua5/YciO/YrdC/YwlC; PFAM: Sua5/YciO/YrdC, N-terminal; Sua5/YciO/YrdC/YwlC family protein 2011149 11044394 Acife_2033 Acidithiobacillus ferrivorans SS3 Sua5/YciO/YrdC/YwlC family protein YP_004784479.1 2010496 R 743299 CDS YP_004784480.1 344200154 11042916 2011392..2012216 1 NC_015942.1 KEGG: afr:AFE_1786 hypothetical protein; hypothetical protein 2012216 11042916 Acife_2034 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784480.1 2011392 D 743299 CDS YP_004784481.1 344200155 11042917 complement(2012255..2012533) 1 NC_015942.1 KEGG: bgf:BC1003_1824 putative signal peptide protein; hypothetical protein 2012533 11042917 Acife_2035 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784481.1 2012255 R 743299 CDS YP_004784482.1 344200156 11042918 complement(2012593..2012874) 1 NC_015942.1 KEGG: afr:AFE_1785 hypothetical protein; hypothetical protein 2012874 11042918 Acife_2036 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784482.1 2012593 R 743299 CDS YP_004784483.1 344200157 11042919 2013266..2015617 1 NC_015942.1 PFAM: Mechanosensitive ion channel MscS; KEGG: afr:AFE_1784 mechanosensitive ion channel family protein; mechanosensitive ion channel MscS 2015617 11042919 Acife_2037 Acidithiobacillus ferrivorans SS3 mechanosensitive ion channel MscS YP_004784483.1 2013266 D 743299 CDS YP_004784484.1 344200158 11042920 complement(2015577..2016770) 1 NC_015942.1 SMART: Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: Glutamate 5-kinase, ProB-related; KEGG: afe:Lferr_1460 glutamate 5-kinase; HAMAP: Glutamate 5-kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; glutamate 5-kinase 2016770 11042920 Acife_2038 Acidithiobacillus ferrivorans SS3 glutamate 5-kinase YP_004784484.1 2015577 R 743299 CDS YP_004784485.1 344200159 11042921 complement(2017022..2018566) 1 NC_015942.1 TIGRFAM: GMP synthase, C-terminal; GMP synthase, N-terminal; HAMAP: GMP synthase [glutamine-hydrolyzing]; KEGG: afr:AFE_1778 GMP synthase; PFAM: GMP synthase, C-terminal; Glutamine amidotransferase class-I, C-terminal; tRNA methyl transferase-like; NAD+ synthase; GMP synthase 2018566 11042921 Acife_2039 Acidithiobacillus ferrivorans SS3 GMP synthase YP_004784485.1 2017022 R 743299 CDS YP_004784486.1 344200160 11044395 complement(2018570..2020030) 1 NC_015942.1 TIGRFAM: IMP dehydrogenase; PFAM: IMP dehydrogenase/GMP reductase; Cystathionine beta-synthase, core; KEGG: afr:AFE_1777 inosine-5'-monophosphate dehydrogenase; SMART: Cystathionine beta-synthase, core; inosine-5'-monophosphate dehydrogenase 2020030 11044395 Acife_2040 Acidithiobacillus ferrivorans SS3 inosine-5'-monophosphate dehydrogenase YP_004784486.1 2018570 R 743299 CDS YP_004784487.1 344200161 11042922 2020205..2021188 1 NC_015942.1 PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_1776 glycosyl transferase; family 2 glycosyl transferase 2021188 11042922 Acife_2041 Acidithiobacillus ferrivorans SS3 family 2 glycosyl transferase YP_004784487.1 2020205 D 743299 CDS YP_004784488.1 344200162 11042923 2021330..2022826 1 NC_015942.1 KEGG: afe:Lferr_1451 poly(A) polymerase; TIGRFAM: Poly(A) polymerase, PcnB; PFAM: Polynucleotide adenylyltransferase region; poly(A) polymerase 2022826 11042923 Acife_2042 Acidithiobacillus ferrivorans SS3 poly(A) polymerase YP_004784488.1 2021330 D 743299 CDS YP_004784489.1 344200163 11042924 2022846..2024195 1 NC_015942.1 KEGG: afr:AFE_1774 polyA polymerase family protein; manually curated; PFAM: Polynucleotide adenylyltransferase region; polynucleotide adenylyltransferase protein 2024195 11042924 Acife_2043 Acidithiobacillus ferrivorans SS3 polynucleotide adenylyltransferase protein YP_004784489.1 2022846 D 743299 CDS YP_004784490.1 344200164 11042925 2024153..2024722 1 NC_015942.1 KEGG: afe:Lferr_1449 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; PFAM: 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 2024722 11042925 Acife_2044 Acidithiobacillus ferrivorans SS3 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase YP_004784490.1 2024153 D 743299 CDS YP_004784491.1 344200165 11042926 2024719..2025333 1 NC_015942.1 PFAM: Deoxynucleoside kinase; KEGG: afr:AFE_1772 deoxyguanosine kinase/deoxyadenosine kinase, putative; deoxynucleoside kinase 2025333 11042926 Acife_2045 Acidithiobacillus ferrivorans SS3 deoxynucleoside kinase YP_004784491.1 2024719 D 743299 CDS YP_004784492.1 344200166 11044396 2025326..2026111 1 NC_015942.1 TIGRFAM: Ketopantoate hydroxymethyltransferase; HAMAP: Ketopantoate hydroxymethyltransferase; KEGG: afr:AFE_1771 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase 2026111 11044396 Acife_2046 Acidithiobacillus ferrivorans SS3 3-methyl-2-oxobutanoate hydroxymethyltransferase YP_004784492.1 2025326 D 743299 CDS YP_004784493.1 344200167 11042927 2026083..2026952 1 NC_015942.1 TIGRFAM: Pantoate-beta-alanine ligase; HAMAP: Pantoate-beta-alanine ligase; KEGG: afr:AFE_1770 pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantothenate synthetase 2026952 11042927 Acife_2047 Acidithiobacillus ferrivorans SS3 pantothenate synthetase YP_004784493.1 2026083 D 743299 CDS YP_004784494.1 344200168 11042928 2026949..2030782 1 NC_015942.1 PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; Cysteine-rich region, CCG; KEGG: afr:AFE_1769 oxidoreductase, FAD-binding, putative; FAD linked oxidase domain-containing protein 2030782 11042928 Acife_2048 Acidithiobacillus ferrivorans SS3 FAD linked oxidase domain-containing protein YP_004784494.1 2026949 D 743299 CDS YP_004784495.1 344200169 11042929 2030782..2031471 1 NC_015942.1 PFAM: Protein of unknown function DUF1275; KEGG: nha:Nham_4228 hypothetical protein; hypothetical protein 2031471 11042929 Acife_2049 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784495.1 2030782 D 743299 CDS YP_004784496.1 344200170 11042930 2031487..2031888 1 NC_015942.1 KEGG: afe:Lferr_1444 Smr protein/MutS2; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal; Smr protein/MutS2 2031888 11042930 Acife_2050 Acidithiobacillus ferrivorans SS3 Smr protein/MutS2 YP_004784496.1 2031487 D 743299 CDS YP_004784497.1 344200171 11042931 2031897..2032523 1 NC_015942.1 PFAM: Class II aldolase/adducin, N-terminal; KEGG: afr:AFE_1766 hypothetical protein; class II aldolase/adducin family protein 2032523 11042931 Acife_2051 Acidithiobacillus ferrivorans SS3 class II aldolase/adducin family protein YP_004784497.1 2031897 D 743299 CDS YP_004784498.1 344200172 11044397 complement(2032496..2033158) 1 NC_015942.1 KEGG: afr:AFE_1767 exodeoxyribonuclease X, putative; PFAM: Exonuclease, RNase T/DNA polymerase III; SMART: Exonuclease; exonuclease RNase T and DNA polymerase III 2033158 11044397 Acife_2052 Acidithiobacillus ferrivorans SS3 exonuclease RNase T and DNA polymerase III YP_004784498.1 2032496 R 743299 CDS YP_004784499.1 344200173 11042932 2033390..2034088 1 NC_015942.1 PFAM: Uncharacterised protein family UPF0005; KEGG: afr:AFE_1764 hypothetical protein; hypothetical protein 2034088 11042932 Acife_2053 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784499.1 2033390 D 743299 CDS YP_004784500.1 344200174 11044398 2034206..2036746 1 NC_015942.1 SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; TIGRFAM: DNA mismatch repair protein MutS, type 1; KEGG: afr:AFE_1760 DNA mismatch repair protein MutS; HAMAP: DNA mismatch repair protein MutS, type 1; PFAM: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS-like, N-terminal; DNA mismatch repair protein MutS, connector; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS, clamp; DNA mismatch repair protein mutS 2036746 11044398 Acife_2054 Acidithiobacillus ferrivorans SS3 DNA mismatch repair protein mutS YP_004784500.1 2034206 D 743299 CDS YP_004784501.1 344200175 11044399 2036815..2036967 1 NC_015942.1 hypothetical protein 2036967 11044399 Acife_2055 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784501.1 2036815 D 743299 CDS YP_004784502.1 344200176 11042933 2036948..2037478 1 NC_015942.1 PFAM: SNARE associated Golgi protein; KEGG: afr:AFE_1136 membrane protein, DedA family; hypothetical protein 2037478 11042933 Acife_2056 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784502.1 2036948 D 743299 CDS YP_004784503.1 344200177 11044400 2037538..2037732 1 NC_015942.1 hypothetical protein 2037732 11044400 Acife_2057 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784503.1 2037538 D 743299 CDS YP_004784504.1 344200178 11042934 2037719..2038435 1 NC_015942.1 PFAM: Protein of unknown function DUF2506; KEGG: pla:Plav_1236 hypothetical protein; hypothetical protein 2038435 11042934 Acife_2058 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784504.1 2037719 D 743299 CDS YP_004784505.1 344200179 11042935 complement(2038479..2038748) 1 NC_015942.1 KEGG: pol:Bpro_0451 CopG family protein; CopG family protein 2038748 11042935 Acife_2059 Acidithiobacillus ferrivorans SS3 CopG family protein YP_004784505.1 2038479 R 743299 CDS YP_004784506.1 344200180 11042936 2038985..2039209 1 NC_015942.1 KEGG: afr:AFE_0867 hypothetical protein; hypothetical protein 2039209 11042936 Acife_2060 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784506.1 2038985 D 743299 CDS YP_004784507.1 344200181 11042937 2039272..2039541 1 NC_015942.1 KEGG: afr:AFE_0865 hypothetical protein; hypothetical protein 2039541 11042937 Acife_2061 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784507.1 2039272 D 743299 CDS YP_004784508.1 344200182 11042938 complement(2039538..2040461) 1 NC_015942.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_0866 transcriptional regulator, LysR family; LysR family transcriptional regulator 2040461 11042938 Acife_2062 Acidithiobacillus ferrivorans SS3 LysR family transcriptional regulator YP_004784508.1 2039538 R 743299 CDS YP_004784509.1 344200183 11042939 2040555..2042111 1 NC_015942.1 KEGG: afr:AFE_0864 drug resistance transporter, EmrB/QacA family; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1; EmrB/QacA subfamily drug resistance transporter 2042111 11042939 Acife_2063 Acidithiobacillus ferrivorans SS3 EmrB/QacA subfamily drug resistance transporter YP_004784509.1 2040555 D 743299 CDS YP_004784510.1 344200184 11044401 2042111..2043544 1 NC_015942.1 KEGG: afr:AFE_0863 RND efflux system, drug efflux transporter, outer membrane lipoprotein; TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT; PFAM: Outer membrane efflux protein; NodT family RND efflux system outer membrane lipoprotein 2043544 11044401 Acife_2064 Acidithiobacillus ferrivorans SS3 NodT family RND efflux system outer membrane lipoprotein YP_004784510.1 2042111 D 743299 CDS YP_004784511.1 344200185 11042940 2043541..2044737 1 NC_015942.1 PFAM: Secretion protein HlyD; KEGG: afe:Lferr_0986 secretion protein HlyD family protein; secretion protein HlyD family protein 2044737 11042940 Acife_2065 Acidithiobacillus ferrivorans SS3 secretion protein HlyD family protein YP_004784511.1 2043541 D 743299 CDS YP_004784512.1 344200186 11042941 2044837..2045298 1 NC_015942.1 PFAM: Globin, subset; KEGG: afr:AFE_0861 globin domain protein; globin 2045298 11042941 Acife_2066 Acidithiobacillus ferrivorans SS3 globin YP_004784512.1 2044837 D 743299 CDS YP_004784513.1 344200187 11042942 2045362..2046345 1 NC_015942.1 PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; Ferredoxin; KEGG: afr:AFE_0860 iron-sulfur cluster-binding protein/oxidoreductase, FAD/NAD-binding; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2046345 11042942 Acife_2067 Acidithiobacillus ferrivorans SS3 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_004784513.1 2045362 D 743299 CDS YP_004784514.1 344200188 11042943 complement(2046364..2046609) 1 NC_015942.1 KEGG: afr:AFE_2867 thioredoxin family protein; thioredoxin family protein 2046609 11042943 Acife_2068 Acidithiobacillus ferrivorans SS3 thioredoxin family protein YP_004784514.1 2046364 R 743299 CDS YP_004784515.1 344200189 11042944 2046716..2047174 1 NC_015942.1 PFAM: Haemerythrin/HHE cation-binding motif; KEGG: afr:AFE_2868 hypothetical protein; Hemerythrin HHE cation binding domain-containing protein 2047174 11042944 Acife_2069 Acidithiobacillus ferrivorans SS3 Hemerythrin HHE cation binding domain-containing protein YP_004784515.1 2046716 D 743299 CDS YP_004784516.1 344200190 11044402 2047171..2047617 1 NC_015942.1 KEGG: afr:AFE_2869 glycine cleavage system H protein, putative; HAMAP: Glycine cleavage H-protein; PFAM: Glycine cleavage H-protein; glycine cleavage system H protein 2047617 11044402 Acife_2070 Acidithiobacillus ferrivorans SS3 glycine cleavage system H protein YP_004784516.1 2047171 D 743299 CDS YP_004784517.1 344200191 11042945 2047807..2048220 1 NC_015942.1 PFAM: Protein of unknown function DUF488; KEGG: afe:Lferr_0982 hypothetical protein; hypothetical protein 2048220 11042945 Acife_2071 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784517.1 2047807 D 743299 CDS YP_004784518.1 344200192 11042946 complement(2048250..2049017) 1 NC_015942.1 KEGG: afe:Lferr_0981 Crp/Fnr family transcriptional regulator; PFAM: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; SMART: Cyclic nucleotide-binding; HTH transcriptional regulator, Crp; Crp/Fnr family transcriptional regulator 2049017 11042946 Acife_2072 Acidithiobacillus ferrivorans SS3 Crp/Fnr family transcriptional regulator YP_004784518.1 2048250 R 743299 CDS YP_004784519.1 344200193 11042947 2049284..2050447 1 NC_015942.1 KEGG: mca:MCA0589 nitrate transporter, putative; nitrate transporter 2050447 11042947 Acife_2073 Acidithiobacillus ferrivorans SS3 nitrate transporter YP_004784519.1 2049284 D 743299 CDS YP_004784520.1 344200194 11042948 2050736..2052139 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: bph:Bphy_2337 major facilitator transporter; major facilitator superfamily protein 2052139 11042948 Acife_2074 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004784520.1 2050736 D 743299 CDS YP_004784521.1 344200195 11042949 2052261..2053499 1 NC_015942.1 KEGG: rmr:Rmar_1225 hypothetical protein; hypothetical protein 2053499 11042949 Acife_2075 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784521.1 2052261 D 743299 CDS YP_004784522.1 344200196 11044403 2053739..2056192 1 NC_015942.1 KEGG: bpr:GBP346_A0485 nitrite reductase [NAD(P)H], large subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirB; PFAM: Nitrite/sulphite reductase 4Fe-4S region; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; BFD-like [2Fe-2S]-binding region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; nitrite reductase (NAD(P)H) large subunit 2056192 11044403 Acife_2076 Acidithiobacillus ferrivorans SS3 nitrite reductase (NAD(P)H) large subunit YP_004784522.1 2053739 D 743299 CDS YP_004784523.1 344200197 11042950 2056203..2056523 1 NC_015942.1 KEGG: hdn:Hden_2952 nitrite reductase (NAD(P)H), small subunit; TIGRFAM: Nitrite reductase [NAD(P)H] large subunit, NirD; PFAM: Rieske [2Fe-2S] iron-sulphur domain; nitrite reductase (NAD(P)H) small subunit 2056523 11042950 Acife_2077 Acidithiobacillus ferrivorans SS3 nitrite reductase (NAD(P)H) small subunit YP_004784523.1 2056203 D 743299 CDS YP_004784524.1 344200198 11044404 2056520..2059306 1 NC_015942.1 PFAM: Molybdopterin oxidoreductase; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; BFD-like [2Fe-2S]-binding region; KEGG: mei:Msip34_0344 molybdopterin oxidoreductase; molybdopterin oxidoreductase 2059306 11044404 Acife_2078 Acidithiobacillus ferrivorans SS3 molybdopterin oxidoreductase YP_004784524.1 2056520 D 743299 CDS YP_004784525.1 344200199 11044405 2059303..2060334 1 NC_015942.1 PFAM: Glycosyl transferase, family 3, N-terminal; KEGG: dar:Daro_0815 glycosyl transferase family protein; glycosyl transferase family protein 2060334 11044405 Acife_2079 Acidithiobacillus ferrivorans SS3 glycosyl transferase family protein YP_004784525.1 2059303 D 743299 CDS YP_004784526.1 344200200 11042951 2060349..2061134 1 NC_015942.1 KEGG: afr:AFE_3126 uroporphyrin-III C-methyltransferase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; PFAM: Tetrapyrrole methylase; uroporphyrin-III C-methyltransferase 2061134 11042951 Acife_2080 Acidithiobacillus ferrivorans SS3 uroporphyrin-III C-methyltransferase YP_004784526.1 2060349 D 743299 CDS YP_004784527.1 344200201 11042952 2061144..2061500 1 NC_015942.1 PFAM: Cobalamin (vitamin B12) biosynthesis CbiX; KEGG: afr:AFE_3127 hypothetical protein; cobalamin (vitamin B12) biosynthesis CbiX protein 2061500 11042952 Acife_2081 Acidithiobacillus ferrivorans SS3 cobalamin (vitamin B12) biosynthesis CbiX protein YP_004784527.1 2061144 D 743299 CDS YP_004784528.1 344200202 11044406 2061505..2062071 1 NC_015942.1 KEGG: dar:Daro_0829 response regulator receiver:ANTAR; PFAM: ANTAR; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; response regulator receiver and ANTAR domain-containing protein 2062071 11044406 Acife_2082 Acidithiobacillus ferrivorans SS3 response regulator receiver and ANTAR domain-containing protein YP_004784528.1 2061505 D 743299 CDS YP_004784529.1 344200203 11044407 2062481..2062753 1 NC_015942.1 PFAM: Protein of unknown function DUF1778; KEGG: afr:AFE_1418 hypothetical protein; hypothetical protein 2062753 11044407 Acife_2083 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784529.1 2062481 D 743299 CDS YP_004784530.1 344200204 11044408 2062750..2063244 1 NC_015942.1 PFAM: GCN5-related N-acetyltransferase; KEGG: afr:AFE_1417 acetyltransferase, GNAT family; GCN5-like N-acetyltransferase 2063244 11044408 Acife_2084 Acidithiobacillus ferrivorans SS3 GCN5-like N-acetyltransferase YP_004784530.1 2062750 D 743299 CDS YP_004784531.1 344200205 11042953 complement(2063363..2063932) 1 NC_015942.1 KEGG: afr:AFE_1851 glycosyl transferase, group 2 family protein; hypothetical protein 2063932 11042953 Acife_2085 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784531.1 2063363 R 743299 CDS YP_004784532.1 344200206 11042954 complement(2064507..2065844) 1 NC_015942.1 KEGG: afe:Lferr_1434 phospholipase D/transphosphatidylase; PFAM: Phospholipase D/Transphosphatidylase; SMART: Phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase 2065844 11042954 Acife_2087 Acidithiobacillus ferrivorans SS3 phospholipase D/transphosphatidylase YP_004784532.1 2064507 R 743299 CDS YP_004784533.1 344200207 11042955 complement(2066075..2067745) 1 NC_015942.1 TIGRFAM: Diguanylate cyclase, predicted; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: tsa:AciPR4_2084 response regulator receiver modulated PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase 2067745 11042955 Acife_2088 Acidithiobacillus ferrivorans SS3 diguanylate cyclase/phosphodiesterase YP_004784533.1 2066075 R 743299 CDS YP_004784534.1 344200208 11044410 complement(2067742..2069223) 1 NC_015942.1 KEGG: har:HEAR0296 protein kinase; putative circadian clock protein, KaiC 2069223 11044410 Acife_2089 Acidithiobacillus ferrivorans SS3 putative circadian clock protein, KaiC YP_004784534.1 2067742 R 743299 CDS YP_004784535.1 344200209 11042956 complement(2069228..2069584) 1 NC_015942.1 manually curated; hypothetical protein 2069584 11042956 Acife_2090 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784535.1 2069228 R 743299 CDS YP_004784536.1 344200210 11042957 complement(2069637..2069951) 1 NC_015942.1 KEGG: afr:AFE_2653 hypothetical protein; hypothetical protein 2069951 11042957 Acife_2091 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784536.1 2069637 R 743299 CDS YP_004784537.1 344200211 11042958 complement(2070025..2070486) 1 NC_015942.1 hypothetical protein 2070486 11042958 Acife_2092 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784537.1 2070025 R 743299 CDS YP_004784538.1 344200212 11042959 complement(2070483..2070584) 1 NC_015942.1 hypothetical protein 2070584 11042959 Acife_2093 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784538.1 2070483 R 743299 CDS YP_004784539.1 344200213 11042960 2071120..2071587 1 NC_015942.1 manually curated; KEGG: sfr:Sfri_2035 hypothetical protein; hypothetical protein 2071587 11042960 Acife_2094 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784539.1 2071120 D 743299 CDS YP_004784540.1 344200214 11044411 complement(2071606..2072391) 1 NC_015942.1 PFAM: Major intrinsic protein; KEGG: cte:CT1472 major intrinsic protein; major intrinsic protein 2072391 11044411 Acife_2095 Acidithiobacillus ferrivorans SS3 major intrinsic protein YP_004784540.1 2071606 R 743299 CDS YP_004784541.1 344200215 11042961 complement(2072407..2072766) 1 NC_015942.1 KEGG: xac:XACa0008 hypothetical protein; hypothetical protein 2072766 11042961 Acife_2096 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784541.1 2072407 R 743299 CDS YP_004784542.1 344200216 11042962 2072868..2073026 1 NC_015942.1 hypothetical protein 2073026 11042962 Acife_2097 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784542.1 2072868 D 743299 CDS YP_004784543.1 344200217 11044412 complement(2073286..2073441) 1 NC_015942.1 manually curated; KEGG: azl:AZL_021040 hypothetical protein; hypothetical protein 2073441 11044412 Acife_2098 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784543.1 2073286 R 743299 CDS YP_004784544.1 344200218 11042963 complement(2073482..2074096) 1 NC_015942.1 PFAM: Di-trans-poly-cis-decaprenylcistransferase-like; KEGG: chy:CHY_0237 putative undecaprenyl diphosphate synthase; Di-trans-poly-cis-decaprenylcistransferase 2074096 11042963 Acife_2099 Acidithiobacillus ferrivorans SS3 Di-trans-poly-cis-decaprenylcistransferase YP_004784544.1 2073482 R 743299 CDS YP_004784545.1 344200219 11042964 2074695..2075030 1 NC_015942.1 hypothetical protein 2075030 11042964 Acife_2100 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784545.1 2074695 D 743299 CDS YP_004784546.1 344200220 11044413 2075165..2075344 1 NC_015942.1 KEGG: afr:AFE_1624 hypothetical protein; hypothetical protein 2075344 11044413 Acife_2101 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784546.1 2075165 D 743299 CDS YP_004784547.1 344200221 11042965 2075415..2075585 1 NC_015942.1 PFAM: CsbD-like; KEGG: nmu:Nmul_A1602 CsbD-like; CsbD family protein 2075585 11042965 Acife_2102 Acidithiobacillus ferrivorans SS3 CsbD family protein YP_004784547.1 2075415 D 743299 CDS YP_004784548.1 344200222 11044414 2075608..2076066 1 NC_015942.1 PFAM: PRC-barrel; KEGG: alv:Alvin_0926 PRC-barrel domain-containing protein; PRC-barrel domain-containing protein 2076066 11044414 Acife_2103 Acidithiobacillus ferrivorans SS3 PRC-barrel domain-containing protein YP_004784548.1 2075608 D 743299 CDS YP_004784549.1 344200223 11042966 2076546..2076791 1 NC_015942.1 hypothetical protein 2076791 11042966 Acife_2104 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784549.1 2076546 D 743299 CDS YP_004784550.1 344200224 11042967 2076842..2077132 1 NC_015942.1 KEGG: afe:Lferr_2071 hypothetical protein; hypothetical protein 2077132 11042967 Acife_2105 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784550.1 2076842 D 743299 CDS YP_004784551.1 344200225 11042968 2077208..2077603 1 NC_015942.1 KEGG: pct:PC1_0454 transport-associated protein; PFAM: Transport-associated; SMART: Transport-associated and nodulation region, bacteria; transport-associated protein 2077603 11042968 Acife_2106 Acidithiobacillus ferrivorans SS3 transport-associated protein YP_004784551.1 2077208 D 743299 CDS YP_004784552.1 344200226 11044415 2077659..2078063 1 NC_015942.1 PFAM: PRC-barrel; KEGG: afr:AFE_0361 hypothetical protein; PRC-barrel domain-containing protein 2078063 11044415 Acife_2107 Acidithiobacillus ferrivorans SS3 PRC-barrel domain-containing protein YP_004784552.1 2077659 D 743299 CDS YP_004784553.1 344200227 11042969 2078088..2078444 1 NC_015942.1 KEGG: afr:AFE_0362 hypothetical protein; hypothetical protein 2078444 11042969 Acife_2108 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784553.1 2078088 D 743299 CDS YP_004784554.1 344200228 11042970 complement(2078927..2079379) 1 NC_015942.1 KEGG: afr:AFE_2653 hypothetical protein; hypothetical protein 2079379 11042970 Acife_2109 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784554.1 2078927 R 743299 CDS YP_004784555.1 344200229 11042971 2079560..2080084 1 NC_015942.1 PFAM: SNARE associated Golgi protein; KEGG: afr:AFE_1136 membrane protein, DedA family; hypothetical protein 2080084 11042971 Acife_2110 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784555.1 2079560 D 743299 CDS YP_004784556.1 344200230 11042973 complement(2081180..2081653) 1 NC_015942.1 KEGG: afr:AFE_0831 hypothetical protein; hypothetical protein 2081653 11042973 Acife_2113 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784556.1 2081180 R 743299 CDS YP_004784557.1 344200231 11042974 complement(2081837..2082013) 1 NC_015942.1 hypothetical protein 2082013 11042974 Acife_2114 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784557.1 2081837 R 743299 CDS YP_004784558.1 344200232 11044417 complement(2082035..2082391) 1 NC_015942.1 KEGG: lch:Lcho_2219 hypothetical protein; hypothetical protein 2082391 11044417 Acife_2115 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784558.1 2082035 R 743299 CDS YP_004784559.1 344200233 11042975 complement(2082373..2082672) 1 NC_015942.1 KEGG: mea:Mex_1p1482 hypothetical protein; hypothetical protein 2082672 11042975 Acife_2116 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784559.1 2082373 R 743299 CDS YP_004784560.1 344200234 11042977 complement(2083451..2085160) 1 NC_015942.1 KEGG: afo:Afer_0254 chloride channel core; manually curated; PFAM: Chloride channel, voltage gated; Cl- channel voltage-gated family protein 2085160 11042977 Acife_2118 Acidithiobacillus ferrivorans SS3 Cl- channel voltage-gated family protein YP_004784560.1 2083451 R 743299 CDS YP_004784561.1 344200235 11042978 complement(2085492..2085773) 1 NC_015942.1 TIGRFAM: Addiction module antidote protein, HigA; PFAM: Helix-turn-helix type 3; KEGG: csa:Csal_2342 XRE family plasmid maintenance system antidote protein; SMART: Helix-turn-helix type 3; XRE family transcriptional regulator 2085773 11042978 Acife_2119 Acidithiobacillus ferrivorans SS3 XRE family transcriptional regulator YP_004784561.1 2085492 R 743299 CDS YP_004784562.1 344200236 11042980 complement(2086046..2086735) 1 NC_015942.1 PFAM: Pirin, N-terminal; KEGG: mfa:Mfla_1833 pirin-like protein; Pirin domain-containing protein 2086735 11042980 Acife_2121 Acidithiobacillus ferrivorans SS3 Pirin domain-containing protein YP_004784562.1 2086046 R 743299 CDS YP_004784563.1 344200237 11042981 2086983..2087528 1 NC_015942.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: afr:AFE_1007 transglycosylase, putative; lytic transglycosylase 2087528 11042981 Acife_2122 Acidithiobacillus ferrivorans SS3 lytic transglycosylase YP_004784563.1 2086983 D 743299 CDS YP_004784564.1 344200238 11042982 complement(2087552..2088076) 1 NC_015942.1 hypothetical protein 2088076 11042982 Acife_2123 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784564.1 2087552 R 743299 CDS YP_004784565.1 344200239 11044418 complement(2088261..2090666) 1 NC_015942.1 TIGRFAM: DNA topoisomerase IV, subunit A, Gram-negative; PFAM: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel; KEGG: afr:AFE_2028 DNA topoisomerase IV subunit A; SMART: DNA topoisomerase, type IIA, subunit A or C-terminal; DNA topoisomerase IV subunit A 2090666 11044418 Acife_2124 Acidithiobacillus ferrivorans SS3 DNA topoisomerase IV subunit A YP_004784565.1 2088261 R 743299 CDS YP_004784566.1 344200240 11042983 complement(2090684..2092654) 1 NC_015942.1 KEGG: afr:AFE_2029 DNA topoisomerase IV subunit B; PFAM: DNA topoisomerase, type IIA, subunit B, region 2; ATP-binding region, ATPase-like; DNA topoisomerase, type IIA, subunit B, C-terminal; SMART: DNA topoisomerase, type IIA, subunit B or N-terminal; ATP-binding region, ATPase-like; DNA topoisomerase type IIA subunit B region 2 domain-containing protein 2092654 11042983 Acife_2125 Acidithiobacillus ferrivorans SS3 DNA topoisomerase type IIA subunit B region 2 domain-containing protein YP_004784566.1 2090684 R 743299 CDS YP_004784567.1 344200241 11044419 2092972..2093808 1 NC_015942.1 PFAM: Signal transduction response regulator, C-terminal; KEGG: afe:Lferr_2550 putative winged helix family two component transcriptional regulator; winged helix family transcriptional regulator 2093808 11044419 Acife_2126 Acidithiobacillus ferrivorans SS3 winged helix family transcriptional regulator YP_004784567.1 2092972 D 743299 CDS YP_004784568.1 344200242 11042984 complement(2093857..2096901) 1 NC_015942.1 PFAM: Acriflavin resistance protein; KEGG: afe:Lferr_1699 acriflavin resistance protein; acriflavin resistance protein 2096901 11042984 Acife_2127 Acidithiobacillus ferrivorans SS3 acriflavin resistance protein YP_004784568.1 2093857 R 743299 CDS YP_004784569.1 344200243 11042985 complement(2096901..2097938) 1 NC_015942.1 KEGG: afr:AFE_2036 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 2097938 11042985 Acife_2128 Acidithiobacillus ferrivorans SS3 RND family efflux transporter MFP subunit YP_004784569.1 2096901 R 743299 CDS YP_004784570.1 344200244 11044420 complement(2097953..2099317) 1 NC_015942.1 PFAM: Outer membrane efflux protein; KEGG: afr:AFE_2037 outer membrane efflux protein; outer membrane efflux protein 2099317 11044420 Acife_2129 Acidithiobacillus ferrivorans SS3 outer membrane efflux protein YP_004784570.1 2097953 R 743299 CDS YP_004784571.1 344200245 11042986 complement(2099387..2100700) 1 NC_015942.1 KEGG: afr:AFE_2031 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; integral membrane sensor signal transduction histidine kinase 2100700 11042986 Acife_2130 Acidithiobacillus ferrivorans SS3 integral membrane sensor signal transduction histidine kinase YP_004784571.1 2099387 R 743299 CDS YP_004784572.1 344200246 11042987 complement(2100697..2101359) 1 NC_015942.1 KEGG: afr:AFE_2032 DNA-binding response regulator; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; SMART: Signal transduction response regulator, receiver region; two component winged helix family transcriptional regulator 2101359 11042987 Acife_2131 Acidithiobacillus ferrivorans SS3 two component winged helix family transcriptional regulator YP_004784572.1 2100697 R 743299 CDS YP_004784573.1 344200247 11044421 complement(2101447..2101758) 1 NC_015942.1 PFAM: Peptidase M4, propeptide, PepSY; KEGG: afr:AFE_2033 hypothetical protein; propeptide PepSY amd peptidase M4 2101758 11044421 Acife_2132 Acidithiobacillus ferrivorans SS3 propeptide PepSY amd peptidase M4 YP_004784573.1 2101447 R 743299 CDS YP_004784574.1 344200248 11042988 complement(2101985..2104348) 1 NC_015942.1 PFAM: TonB-dependent receptor, beta-barrel; TonB-dependent receptor, plug; KEGG: afr:AFE_2040 TonB-dependent receptor; TonB-dependent receptor 2104348 11042988 Acife_2133 Acidithiobacillus ferrivorans SS3 TonB-dependent receptor YP_004784574.1 2101985 R 743299 CDS YP_004784575.1 344200249 11044422 2104678..2105280 1 NC_015942.1 KEGG: afr:AFE_3099 hypothetical protein; hypothetical protein 2105280 11044422 Acife_2134 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784575.1 2104678 D 743299 CDS YP_004784576.1 344200250 11042989 complement(2105288..2106226) 1 NC_015942.1 KEGG: afr:AFE_2041 hypothetical protein; hypothetical protein 2106226 11042989 Acife_2135 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784576.1 2105288 R 743299 CDS YP_004784577.1 344200251 11042990 2106331..2107005 1 NC_015942.1 TIGRFAM: Signal transduction response regulator, heavy metal response; PFAM: Signal transduction response regulator, receiver region; Signal transduction response regulator, C-terminal; KEGG: tin:Tint_1277 two component transcriptional regulator, winged helix family; SMART: Signal transduction response regulator, receiver region; two component heavy metal response winged helix family transcriptional regulator 2107005 11042990 Acife_2136 Acidithiobacillus ferrivorans SS3 two component heavy metal response winged helix family transcriptional regulator YP_004784577.1 2106331 D 743299 CDS YP_004784578.1 344200252 11044423 2106983..2108425 1 NC_015942.1 TIGRFAM: Signal transduction histidine kinase, heavy metal sensor; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; KEGG: tin:Tint_1278 multi-sensor signal transduction histidine kinase; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; heavy metal sensor signal transduction histidine kinase 2108425 11044423 Acife_2137 Acidithiobacillus ferrivorans SS3 heavy metal sensor signal transduction histidine kinase YP_004784578.1 2106983 D 743299 CDS YP_004784579.1 344200253 11042991 2108604..2109908 1 NC_015942.1 PFAM: Outer membrane efflux protein; KEGG: afr:AFE_2045 outer membrane efflux protein; outer membrane efflux protein 2109908 11042991 Acife_2138 Acidithiobacillus ferrivorans SS3 outer membrane efflux protein YP_004784579.1 2108604 D 743299 CDS YP_004784580.1 344200254 11042992 2109905..2110921 1 NC_015942.1 TIGRFAM: Secretion protein HlyD; KEGG: afr:AFE_2044 efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 2110921 11042992 Acife_2139 Acidithiobacillus ferrivorans SS3 RND family efflux transporter MFP subunit YP_004784580.1 2109905 D 743299 CDS YP_004784581.1 344200255 11044424 2110918..2113986 1 NC_015942.1 PFAM: Acriflavin resistance protein; KEGG: afr:AFE_2043 transporter, AcrB/AcrD/AcrF family; acriflavin resistance protein 2113986 11044424 Acife_2140 Acidithiobacillus ferrivorans SS3 acriflavin resistance protein YP_004784581.1 2110918 D 743299 CDS YP_004784582.1 344200256 11042993 2114087..2115136 1 NC_015942.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: afr:AFE_2052 hypothetical protein; hypothetical protein 2115136 11042993 Acife_2141 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784582.1 2114087 D 743299 CDS YP_004784583.1 344200257 11042994 complement(2115210..2115491) 1 NC_015942.1 KEGG: afe:Lferr_2097 hypothetical protein; hypothetical protein 2115491 11042994 Acife_2142 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784583.1 2115210 R 743299 CDS YP_004784584.1 344200258 11042995 complement(2115561..2115731) 1 NC_015942.1 hypothetical protein 2115731 11042995 Acife_2143 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784584.1 2115561 R 743299 CDS YP_004784585.1 344200259 11042996 complement(2115894..2116130) 1 NC_015942.1 hypothetical protein 2116130 11042996 Acife_2144 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784585.1 2115894 R 743299 CDS YP_004784586.1 344200260 11042997 2116207..2117490 1 NC_015942.1 PFAM: Outer membrane efflux protein; KEGG: afr:AFE_1949 outer membrane heavy metal efflux protein, putative; outer membrane efflux protein 2117490 11042997 Acife_2145 Acidithiobacillus ferrivorans SS3 outer membrane efflux protein YP_004784586.1 2116207 D 743299 CDS YP_004784587.1 344200261 11044425 2117487..2118809 1 NC_015942.1 KEGG: afe:Lferr_0171 RND family efflux transporter MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 2118809 11044425 Acife_2146 Acidithiobacillus ferrivorans SS3 RND family efflux transporter MFP subunit YP_004784587.1 2117487 D 743299 CDS YP_004784588.1 344200262 11042998 2118802..2121912 1 NC_015942.1 KEGG: afe:Lferr_0172 CzcA family heavy metal efflux pump; TIGRFAM: Heavy metal efflux pump CzcA; PFAM: Acriflavin resistance protein; CzcA family heavy metal efflux pump 2121912 11042998 Acife_2147 Acidithiobacillus ferrivorans SS3 CzcA family heavy metal efflux pump YP_004784588.1 2118802 D 743299 CDS YP_004784589.1 344200263 11042999 2121982..2123994 1 NC_015942.1 PFAM: Pyruvate kinase, barrel; KEGG: afe:Lferr_0897 pyruvate kinase; pyruvate kinase 2123994 11042999 Acife_2148 Acidithiobacillus ferrivorans SS3 pyruvate kinase YP_004784589.1 2121982 D 743299 CDS YP_004784590.1 344200264 11044426 complement(2123833..2124585) 1 NC_015942.1 KEGG: afr:AFE_0750 CDP-diacylglycerol--serine O-phosphatidyltransferse; TIGRFAM: CDP-diacylglycerol--serine O-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol/serine O-phosphatidyltransferase 2124585 11044426 Acife_2149 Acidithiobacillus ferrivorans SS3 CDP-diacylglycerol/serine O-phosphatidyltransferase YP_004784590.1 2123833 R 743299 CDS YP_004784591.1 344200265 11043000 complement(2124582..2125244) 1 NC_015942.1 TIGRFAM: Phosphatidylserine decarboxylase-related protein; HAMAP: Phosphatidylserine decarboxylase proenzyme; KEGG: afr:AFE_0748 phosphatidylserine decarboxylase; PFAM: Phosphatidylserine decarboxylase-related; phosphatidylserine decarboxylase proenzyme 2125244 11043000 Acife_2150 Acidithiobacillus ferrivorans SS3 phosphatidylserine decarboxylase proenzyme YP_004784591.1 2124582 R 743299 CDS YP_004784592.1 344200266 11044427 complement(2125363..2126379) 1 NC_015942.1 TIGRFAM: Acetohydroxy acid isomeroreductase; HAMAP: Ketol-acid reductoisomerase; KEGG: afr:AFE_0747 ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase, catalytic; Acetohydroxy acid isomeroreductase C-terminal; Ketol-acid reductoisomerase 2126379 11044427 Acife_2151 Acidithiobacillus ferrivorans SS3 Ketol-acid reductoisomerase YP_004784592.1 2125363 R 743299 CDS YP_004784593.1 344200267 11043001 complement(2126430..2126915) 1 NC_015942.1 KEGG: afr:AFE_0746 acetolactate synthase, small subunit; TIGRFAM: Acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit, C-terminal; Amino acid-binding ACT; acetolactate synthase small subunit 2126915 11043001 Acife_2152 Acidithiobacillus ferrivorans SS3 acetolactate synthase small subunit YP_004784593.1 2126430 R 743299 CDS YP_004784594.1 344200268 11043002 complement(2126919..2128664) 1 NC_015942.1 KEGG: afr:AFE_0745 acetolactate synthase, large subunit, biosynthetic type; TIGRFAM: Acetolactate synthase, large subunit, biosynthetic; PFAM: Thiamine pyrophosphate enzyme, N-terminal TPP binding region; Thiamine pyrophosphate enzyme, central region; Thiamine pyrophosphate enzyme, C-terminal TPP-binding; acetolactate synthase large subunit, biosynthetic type 2128664 11043002 Acife_2153 Acidithiobacillus ferrivorans SS3 acetolactate synthase large subunit, biosynthetic type YP_004784594.1 2126919 R 743299 CDS YP_004784595.1 344200269 11043003 complement(2128797..2130335) 1 NC_015942.1 KEGG: afr:AFE_0744 MutS domain V protein; PFAM: DNA mismatch repair protein MutS, C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; DNA mismatch repair protein MutS domain-containing protein 2130335 11043003 Acife_2154 Acidithiobacillus ferrivorans SS3 DNA mismatch repair protein MutS domain-containing protein YP_004784595.1 2128797 R 743299 CDS YP_004784596.1 344200270 11043004 complement(2130398..2130823) 1 NC_015942.1 KEGG: afr:AFE_0743 hypothetical protein; hypothetical protein 2130823 11043004 Acife_2155 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784596.1 2130398 R 743299 CDS YP_004784597.1 344200271 11043005 complement(2130823..2131254) 1 NC_015942.1 KEGG: afr:AFE_0742 conserved hypothetical protein TIGR00149; TIGRFAM: Uncharacterised protein family UPF0047; PFAM: Uncharacterised protein family UPF0047; hypothetical protein 2131254 11043005 Acife_2156 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784597.1 2130823 R 743299 CDS YP_004784598.1 344200272 11043006 complement(2131235..2131801) 1 NC_015942.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: afr:AFE_0741 cytidine and deoxycytidylate deaminase family protein; zinc-binding CMP/dCMP deaminase 2131801 11043006 Acife_2157 Acidithiobacillus ferrivorans SS3 zinc-binding CMP/dCMP deaminase YP_004784598.1 2131235 R 743299 CDS YP_004784599.1 344200273 11043007 2132026..2133090 1 NC_015942.1 TIGRFAM: Type IV pilus assembly protein PilM; KEGG: afr:AFE_0739 type IV pilus assembly protein PilM; type IV pilus assembly protein PilM 2133090 11043007 Acife_2158 Acidithiobacillus ferrivorans SS3 type IV pilus assembly protein PilM YP_004784599.1 2132026 D 743299 CDS YP_004784600.1 344200274 11043008 2133087..2133680 1 NC_015942.1 PFAM: Fimbrial assembly; KEGG: afr:AFE_0738 type IV pilus biogenesis protein PilN; fimbrial assembly family protein 2133680 11043008 Acife_2159 Acidithiobacillus ferrivorans SS3 fimbrial assembly family protein YP_004784600.1 2133087 D 743299 CDS YP_004784601.1 344200275 11044428 2133677..2134330 1 NC_015942.1 PFAM: Pilus assembly protein, PilO; KEGG: afr:AFE_0737 fimbrial assembly protein PilO, putative; Pilus assembly protein PilO 2134330 11044428 Acife_2160 Acidithiobacillus ferrivorans SS3 Pilus assembly protein PilO YP_004784601.1 2133677 D 743299 CDS YP_004784602.1 344200276 11043009 2134327..2134875 1 NC_015942.1 PFAM: Pilus assembly protein PilP; KEGG: afr:AFE_0736 type 4 fimbrial biogenesis protein PilP, putative; Pilus assembly protein PilP 2134875 11043009 Acife_2161 Acidithiobacillus ferrivorans SS3 Pilus assembly protein PilP YP_004784602.1 2134327 D 743299 CDS YP_004784603.1 344200277 11043010 2134920..2137277 1 NC_015942.1 KEGG: afr:AFE_0735 fimbrial assembly protein PilQ, putative; TIGRFAM: Type IV pilus secretin PilQ; PFAM: Type II/III secretion system; NolW-like; Secretin/TonB, short N-terminal; type IV pilus secretin PilQ 2137277 11043010 Acife_2162 Acidithiobacillus ferrivorans SS3 type IV pilus secretin PilQ YP_004784603.1 2134920 D 743299 CDS YP_004784604.1 344200278 11044429 2137274..2137813 1 NC_015942.1 KEGG: afr:AFE_0734 shikimate kinase; HAMAP: Shikimate kinase; PFAM: Shikimate kinase; shikimate kinase 2137813 11044429 Acife_2163 Acidithiobacillus ferrivorans SS3 shikimate kinase YP_004784604.1 2137274 D 743299 CDS YP_004784605.1 344200279 11044430 2137917..2139011 1 NC_015942.1 TIGRFAM: 3-dehydroquinate synthase AroB, subgroup; HAMAP: 3-dehydroquinate synthase; KEGG: afr:AFE_0733 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase AroB; 3-dehydroquinate synthase 2139011 11044430 Acife_2164 Acidithiobacillus ferrivorans SS3 3-dehydroquinate synthase YP_004784605.1 2137917 D 743299 CDS YP_004784606.1 344200280 11043011 2139004..2139843 1 NC_015942.1 KEGG: afe:Lferr_0880 thymidylate synthase, flavin-dependent; TIGRFAM: Thymidylate synthase ThyX; PFAM: Thymidylate synthase ThyX; thymidylate synthase, flavin-dependent 2139843 11043011 Acife_2165 Acidithiobacillus ferrivorans SS3 thymidylate synthase, flavin-dependent YP_004784606.1 2139004 D 743299 CDS YP_004784607.1 344200281 11043012 2139836..2141008 1 NC_015942.1 SMART: Metal-dependent phosphohydrolase, HD region; TIGRFAM: Deoxyguanosinetriphosphate triphosphohydrolase; KEGG: afr:AFE_0731 deoxyguanosinetriphosphate triphosphohydrolase, putative; HAMAP: Deoxyguanosinetriphosphate triphosphohydrolase-like protein; PFAM: Metal-dependent phosphohydrolase, HD region, subdomain; deoxyguanosinetriphosphate triphosphohydrolase-like protein 2141008 11043012 Acife_2166 Acidithiobacillus ferrivorans SS3 deoxyguanosinetriphosphate triphosphohydrolase-like protein YP_004784607.1 2139836 D 743299 CDS YP_004784608.1 344200282 11043013 2141145..2145572 1 NC_015942.1 PFAM: Glutamate synthase, central-C; Glutamine amidotransferase, class-II; Glutamate synthase, central-N; Glutamate synthase, alpha subunit, C-terminal; KEGG: afr:AFE_0730 glutamate synthase, large subunit; ferredoxin-dependent glutamate synthase 2145572 11043013 Acife_2167 Acidithiobacillus ferrivorans SS3 ferredoxin-dependent glutamate synthase YP_004784608.1 2141145 D 743299 CDS YP_004784609.1 344200283 11043014 2145601..2146998 1 NC_015942.1 KEGG: afr:AFE_0729 glutamate synthase, small subunit; TIGRFAM: Glutamate synthase, NADH/NADPH, small subunit 2; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutamate synthase small subunit 2146998 11043014 Acife_2168 Acidithiobacillus ferrivorans SS3 glutamate synthase small subunit YP_004784609.1 2145601 D 743299 CDS YP_004784610.1 344200284 11043015 2147002..2148060 1 NC_015942.1 TIGRFAM: Uroporphyrinogen decarboxylase HemE; HAMAP: Uroporphyrinogen decarboxylase HemE; KEGG: afr:AFE_0728 uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 2148060 11043015 Acife_2169 Acidithiobacillus ferrivorans SS3 uroporphyrinogen decarboxylase YP_004784610.1 2147002 D 743299 CDS YP_004784611.1 344200285 11044431 complement(2148057..2148959) 1 NC_015942.1 TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: Phospholipid/glycerol acyltransferase; KEGG: afe:Lferr_0875 1-acyl-sn-glycerol-3-phosphate acyltransferase; SMART: Phospholipid/glycerol acyltransferase; 1-acyl-sn-glycerol-3-phosphate acyltransferase 2148959 11044431 Acife_2170 Acidithiobacillus ferrivorans SS3 1-acyl-sn-glycerol-3-phosphate acyltransferase YP_004784611.1 2148057 R 743299 CDS YP_004784612.1 344200286 11043016 complement(2148956..2149732) 1 NC_015942.1 KEGG: afr:AFE_0726 hypothetical protein; hypothetical protein 2149732 11043016 Acife_2171 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784612.1 2148956 R 743299 CDS YP_004784613.1 344200287 11043017 2150089..2150298 1 NC_015942.1 KEGG: afr:AFE_0725 hypothetical protein; hypothetical protein 2150298 11043017 Acife_2172 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784613.1 2150089 D 743299 CDS YP_004784614.1 344200288 11043018 2150295..2151263 1 NC_015942.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: afr:AFE_0724 hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold domain-containing protein 2151263 11043018 Acife_2173 Acidithiobacillus ferrivorans SS3 alpha/beta hydrolase fold domain-containing protein YP_004784614.1 2150295 D 743299 CDS YP_004784615.1 344200289 11043019 2151260..2151631 1 NC_015942.1 PFAM: HTH transcriptional regulator, LysR; KEGG: afr:AFE_0723 helix-turn-helix domain protein; putative ModE family transcriptional regulator 2151631 11043019 Acife_2174 Acidithiobacillus ferrivorans SS3 putative ModE family transcriptional regulator YP_004784615.1 2151260 D 743299 CDS YP_004784616.1 344200290 11044432 2151628..2153148 1 NC_015942.1 KEGG: afr:AFE_0722 threonine ammonia-lyase, biosynthetic; TIGRFAM: Threonine dehydratase I; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; Threonine dehydratase, C-terminal; threonine dehydratase, biosynthetic 2153148 11044432 Acife_2175 Acidithiobacillus ferrivorans SS3 threonine dehydratase, biosynthetic YP_004784616.1 2151628 D 743299 CDS YP_004784617.1 344200291 11043020 complement(2153191..2154441) 1 NC_015942.1 PFAM: FAD dependent oxidoreductase; KEGG: afr:AFE_0720 FAD-dependent oxidoreductase; FAD dependent oxidoreductase 2154441 11043020 Acife_2176 Acidithiobacillus ferrivorans SS3 FAD dependent oxidoreductase YP_004784617.1 2153191 R 743299 CDS YP_004784618.1 344200292 11043022 complement(2155050..2156903) 1 NC_015942.1 KEGG: rpe:RPE_1031 hypothetical protein; hypothetical protein 2156903 11043022 Acife_2178 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784618.1 2155050 R 743299 CDS YP_004784619.1 344200293 11043023 complement(2156894..2157418) 1 NC_015942.1 KEGG: vha:VIBHAR_05006 hypothetical protein; hypothetical protein 2157418 11043023 Acife_2179 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784619.1 2156894 R 743299 CDS YP_004784620.1 344200294 11043024 complement(2157406..2158479) 1 NC_015942.1 KEGG: par:Psyc_0020 hypothetical protein; hypothetical protein 2158479 11043024 Acife_2180 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784620.1 2157406 R 743299 CDS YP_004784621.1 344200295 11043025 complement(2158476..2161454) 1 NC_015942.1 PFAM: DNA methylase N-4/N-6; KEGG: vei:Veis_4172 DNA methylase N-4/N-6 domain-containing protein; DNA methylase N-4/N-6 domain-containing protein 2161454 11043025 Acife_2181 Acidithiobacillus ferrivorans SS3 DNA methylase N-4/N-6 domain-containing protein YP_004784621.1 2158476 R 743299 CDS YP_004784622.1 344200296 11043026 complement(2161475..2162317) 1 NC_015942.1 KEGG: cph:Cpha266_1711 DNA-damage-inducible protein D; DNA-damage-inducible protein D 2162317 11043026 Acife_2182 Acidithiobacillus ferrivorans SS3 DNA-damage-inducible protein D YP_004784622.1 2161475 R 743299 CDS YP_004784623.1 344200297 11044433 complement(2162314..2162559) 1 NC_015942.1 manually curated; PFAM: Addiction module component, CHP02574; putative addiction module family protein 2162559 11044433 Acife_2183 Acidithiobacillus ferrivorans SS3 putative addiction module family protein YP_004784623.1 2162314 R 743299 CDS YP_004784624.1 344200298 11043027 complement(2162550..2165603) 1 NC_015942.1 PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: vei:Veis_4168 type III restriction enzyme, res subunit; type III restriction protein res subunit 2165603 11043027 Acife_2184 Acidithiobacillus ferrivorans SS3 type III restriction protein res subunit YP_004784624.1 2162550 R 743299 CDS YP_004784625.1 344200299 11044434 complement(2165916..2166866) 1 NC_015942.1 KEGG: afr:AFE_2056 protein-export membrane protein SecF; TIGRFAM: SecF protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein SecF 2166866 11044434 Acife_2185 Acidithiobacillus ferrivorans SS3 protein-export membrane protein SecF YP_004784625.1 2165916 R 743299 CDS YP_004784626.1 344200300 11043029 complement(2166874..2168658) 1 NC_015942.1 KEGG: afr:AFE_2057 protein-export membrane protein SecD; TIGRFAM: SecD export membrane protein; SecD/SecF/SecDF export membrane protein; PFAM: SecD/SecF/SecDF export membrane protein; protein-export membrane protein SecD 2168658 11043029 Acife_2186 Acidithiobacillus ferrivorans SS3 protein-export membrane protein SecD YP_004784626.1 2166874 R 743299 CDS YP_004784627.1 344200301 11043030 complement(2168669..2169004) 1 NC_015942.1 KEGG: afr:AFE_2058 preprotein translocase, YajC subunit; TIGRFAM: YajC; PFAM: YajC; preprotein translocase subunit YajC 2169004 11043030 Acife_2187 Acidithiobacillus ferrivorans SS3 preprotein translocase subunit YajC YP_004784627.1 2168669 R 743299 CDS YP_004784628.1 344200302 11043031 complement(2169046..2170161) 1 NC_015942.1 TIGRFAM: Queuine tRNA-ribosyltransferase; Queuine/other tRNA-ribosyltransferase; HAMAP: Queuine tRNA-ribosyltransferase; KEGG: afr:AFE_2059 queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; Queuine tRNA-ribosyltransferase 2170161 11043031 Acife_2188 Acidithiobacillus ferrivorans SS3 Queuine tRNA-ribosyltransferase YP_004784628.1 2169046 R 743299 CDS YP_004784629.1 344200303 11043032 complement(2170158..2171195) 1 NC_015942.1 TIGRFAM: Queuosine biosynthesis protein; HAMAP: S-adenosylmethionine:tRNA ribosyltransferase-isomerase; KEGG: afr:AFE_2060 S-adenosylmethionine:tRNA ribosyltransferase-isomerase; PFAM: Queuosine biosynthesis protein; S-adenosylmethionine:tRNA ribosyltransferase-isomerase 2171195 11043032 Acife_2189 Acidithiobacillus ferrivorans SS3 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_004784629.1 2170158 R 743299 CDS YP_004784630.1 344200304 11043033 complement(2171204..2172529) 1 NC_015942.1 PFAM: Protein of unknown function DUF21; Cystathionine beta-synthase, core; Transporter-associated region; KEGG: afr:AFE_2061 CBS domain protein; hypothetical protein 2172529 11043033 Acife_2190 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784630.1 2171204 R 743299 CDS YP_004784631.1 344200305 11043034 complement(2172568..2173161) 1 NC_015942.1 PFAM: Cystathionine beta-synthase, core; KEGG: afr:AFE_2062 CBS domain protein; CBS domain-containing protein 2173161 11043034 Acife_2191 Acidithiobacillus ferrivorans SS3 CBS domain-containing protein YP_004784631.1 2172568 R 743299 CDS YP_004784632.1 344200306 11043035 complement(2173225..2174439) 1 NC_015942.1 KEGG: afr:AFE_2063 O-succinylhomoserine sulfhydrylase; TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism, pyridoxal phosphate-dependent enzyme; O-succinylhomoserine sulfhydrylase 2174439 11043035 Acife_2192 Acidithiobacillus ferrivorans SS3 O-succinylhomoserine sulfhydrylase YP_004784632.1 2173225 R 743299 CDS YP_004784633.1 344200307 11044435 complement(2174436..2175881) 1 NC_015942.1 KEGG: afe:Lferr_1722 amidophosphoribosyltransferase; TIGRFAM: Amidophosphoribosyl transferase; PFAM: Glutamine amidotransferase, class-II; Phosphoribosyltransferase; amidophosphoribosyltransferase 2175881 11044435 Acife_2193 Acidithiobacillus ferrivorans SS3 amidophosphoribosyltransferase YP_004784633.1 2174436 R 743299 CDS YP_004784634.1 344200308 11043036 complement(2175871..2176368) 1 NC_015942.1 PFAM: Colicin V production protein; KEGG: afr:AFE_2065 CvpA family protein; colicin V production protein 2176368 11043036 Acife_2194 Acidithiobacillus ferrivorans SS3 colicin V production protein YP_004784634.1 2175871 R 743299 CDS YP_004784635.1 344200309 11043037 complement(2176365..2177654) 1 NC_015942.1 KEGG: afr:AFE_2066 folylpolyglutamate synthase/dihydrofolate synthase; TIGRFAM: Folylpolyglutamate synthetase; PFAM: Mur ligase, central; Mur ligase, C-terminal; FolC bifunctional protein 2177654 11043037 Acife_2195 Acidithiobacillus ferrivorans SS3 FolC bifunctional protein YP_004784635.1 2176365 R 743299 CDS YP_004784636.1 344200310 11043038 complement(2177683..2178567) 1 NC_015942.1 TIGRFAM: Acetyl-CoA carboxylase carboxyl transferase, beta subunit; HAMAP: Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; KEGG: afr:AFE_2067 acetyl-CoA carboxylase, carboxyl transferase, beta subunit; PFAM: Carboxyl transferase; acetyl-coenzyme A carboxylase carboxyl transferase subunit beta 2178567 11043038 Acife_2196 Acidithiobacillus ferrivorans SS3 acetyl-coenzyme A carboxylase carboxyl transferase subunit beta YP_004784636.1 2177683 R 743299 CDS YP_004784637.1 344200311 11043039 complement(2178564..2179382) 1 NC_015942.1 TIGRFAM: Tryptophan synthase, alpha chain; HAMAP: Tryptophan synthase, alpha chain; KEGG: afr:AFE_2068 tryptophan synthase subunit alpha; PFAM: Tryptophan synthase, alpha chain; tryptophan synthase alpha chain 2179382 11043039 Acife_2197 Acidithiobacillus ferrivorans SS3 tryptophan synthase alpha chain YP_004784637.1 2178564 R 743299 CDS YP_004784638.1 344200312 11044436 complement(2179379..2180578) 1 NC_015942.1 TIGRFAM: Tryptophan synthase, beta chain; HAMAP: Tryptophan synthase beta chain; KEGG: afr:AFE_2069 tryptophan synthase subunit beta; PFAM: Pyridoxal phosphate-dependent enzyme, beta subunit; tryptophan synthase beta chain 2180578 11044436 Acife_2198 Acidithiobacillus ferrivorans SS3 tryptophan synthase beta chain YP_004784638.1 2179379 R 743299 CDS YP_004784639.1 344200313 11043040 complement(2180589..2181200) 1 NC_015942.1 PRAI; PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: afr:AFE_2070 N-(5'phosphoribosyl)anthranilate isomerase; N-(5'phosphoribosyl)anthranilate isomerase 2181200 11043040 Acife_2199 Acidithiobacillus ferrivorans SS3 N-(5'phosphoribosyl)anthranilate isomerase YP_004784639.1 2180589 R 743299 CDS YP_004784640.1 344200314 11043041 complement(2181260..2182075) 1 NC_015942.1 TIGRFAM: Pseudouridine synthase I, TruA; HAMAP: Pseudouridine synthase I, TruA; KEGG: afr:AFE_2071 tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain; tRNA pseudouridine synthase A 2182075 11043041 Acife_2200 Acidithiobacillus ferrivorans SS3 tRNA pseudouridine synthase A YP_004784640.1 2181260 R 743299 CDS YP_004784641.1 344200315 11043042 complement(2182089..2184362) 1 NC_015942.1 TIGRFAM: Motility protein FimV, C-terminal; Motility protein FimV, N-terminal; KEGG: afe:Lferr_1730 Tfp pilus assembly protein FimV-like protein; Motility protein FimV 2184362 11043042 Acife_2201 Acidithiobacillus ferrivorans SS3 Motility protein FimV YP_004784641.1 2182089 R 743299 CDS YP_004784642.1 344200316 11043043 complement(2184423..2185445) 1 NC_015942.1 KEGG: afr:AFE_2074 aspartate-semialdehyde dehydrogenase; TIGRFAM: Aspartate-semialdehyde dehydrogenase, bacterial; PFAM: Semialdehyde dehydrogenase, dimerisation region; Semialdehyde dehydrogenase, NAD-binding; aspartate-semialdehyde dehydrogenase 2185445 11043043 Acife_2202 Acidithiobacillus ferrivorans SS3 aspartate-semialdehyde dehydrogenase YP_004784642.1 2184423 R 743299 CDS YP_004784643.1 344200317 11043044 complement(2185453..2186529) 1 NC_015942.1 TIGRFAM: Isopropylmalate dehydrogenase; HAMAP: Isopropylmalate dehydrogenase; KEGG: afr:AFE_2075 3-isopropylmalate dehydrogenase; PFAM: Isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 2186529 11043044 Acife_2203 Acidithiobacillus ferrivorans SS3 3-isopropylmalate dehydrogenase YP_004784643.1 2185453 R 743299 CDS YP_004784644.1 344200318 11043045 complement(2186526..2187083) 1 NC_015942.1 hypothetical protein 2187083 11043045 Acife_2204 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784644.1 2186526 R 743299 CDS YP_004784645.1 344200319 11044437 2187157..2187765 1 NC_015942.1 KEGG: afe:Lferr_1733 molybdopterin-guanine dinucleotide biosynthesis protein A; TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis protein A; HAMAP: Molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A 2187765 11044437 Acife_2205 Acidithiobacillus ferrivorans SS3 molybdopterin-guanine dinucleotide biosynthesis protein A YP_004784645.1 2187157 D 743299 CDS YP_004784646.1 344200320 11043046 2187762..2188256 1 NC_015942.1 KEGG: afr:AFE_2077 molybdopterin-guanine dinucleotide biosynthesis protein B; TIGRFAM: Molybdopterin-guanine dinucleotide biosynthesis MobB region; PFAM: Molybdopterin-guanine dinucleotide biosynthesis MobB region; molybdopterin-guanine dinucleotide biosynthesis protein B 2188256 11043046 Acife_2206 Acidithiobacillus ferrivorans SS3 molybdopterin-guanine dinucleotide biosynthesis protein B YP_004784646.1 2187762 D 743299 CDS YP_004784647.1 344200321 11043047 2188259..2189497 1 NC_015942.1 KEGG: afr:AFE_2078 molybdopterin biosynthesis MoeA protein; TIGRFAM: Molybdenum cofactor synthesis; PFAM: MoeA, N-terminal region, domain I/II; Molybdopterin binding; MoeA, C-terminal, domain IV; molybdenum cofactor synthesis domain-containing protein 2189497 11043047 Acife_2207 Acidithiobacillus ferrivorans SS3 molybdenum cofactor synthesis domain-containing protein YP_004784647.1 2188259 D 743299 CDS YP_004784648.1 344200322 11043048 complement(2189504..2190370) 1 NC_015942.1 KEGG: afr:AFE_2079 endonuclease; hypothetical protein 2190370 11043048 Acife_2208 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784648.1 2189504 R 743299 CDS YP_004784649.1 344200323 11043049 2190410..2191159 1 NC_015942.1 KEGG: afr:AFE_2644 metallo-beta-lactamase family protein; metallo-beta-lactamase family protein 2191159 11043049 Acife_2209 Acidithiobacillus ferrivorans SS3 metallo-beta-lactamase family protein YP_004784649.1 2190410 D 743299 CDS YP_004784650.1 344200324 11043050 complement(2191341..2191949) 1 NC_015942.1 KEGG: afr:AFE_0573 conserved hypothetical protein TIGR00296; TIGRFAM: AMMECR1; PFAM: AMMECR1; AMMECR1 domain-containing protein 2191949 11043050 Acife_2211 Acidithiobacillus ferrivorans SS3 AMMECR1 domain-containing protein YP_004784650.1 2191341 R 743299 CDS YP_004784651.1 344200325 11044439 complement(2191936..2192757) 1 NC_015942.1 PFAM: UPF0103/Mediator of ErbB2-driven cell motility (Memo), related; KEGG: afe:Lferr_0726 hypothetical protein; mediator of ErbB2-driven cell motility-containing protein 2192757 11044439 Acife_2212 Acidithiobacillus ferrivorans SS3 mediator of ErbB2-driven cell motility-containing protein YP_004784651.1 2191936 R 743299 CDS YP_004784652.1 344200326 11043051 complement(2192830..2194137) 1 NC_015942.1 KEGG: afr:AFE_2858 arsenical pump membrane protein; TIGRFAM: Arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; arsenical pump membrane protein 2194137 11043051 Acife_2213 Acidithiobacillus ferrivorans SS3 arsenical pump membrane protein YP_004784652.1 2192830 R 743299 CDS YP_004784653.1 344200327 11043052 2194228..2194680 1 NC_015942.1 KEGG: afr:AFE_2859 transcriptional regulator, ArsR; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; regulatory protein ArsR 2194680 11043052 Acife_2214 Acidithiobacillus ferrivorans SS3 regulatory protein ArsR YP_004784653.1 2194228 D 743299 CDS YP_004784654.1 344200328 11044440 complement(2194576..2195718) 1 NC_015942.1 PFAM: HAMP linker domain; KEGG: dvm:DvMF_1372 methyl-accepting chemotaxis sensory transducer with PAS/Pac sensor; histidine kinase HAMP region domain-containing protein 2195718 11044440 Acife_2215 Acidithiobacillus ferrivorans SS3 histidine kinase HAMP region domain-containing protein YP_004784654.1 2194576 R 743299 CDS YP_004784655.1 344200329 11043053 complement(2195746..2196225) 1 NC_015942.1 KEGG: cho:Chro.60463 hypothetical protein; hypothetical protein 2196225 11043053 Acife_2216 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784655.1 2195746 R 743299 CDS YP_004784656.1 344200330 11043054 2196889..2197932 1 NC_015942.1 PFAM: Uncharacterised protein family UPF0118; KEGG: afr:AFE_0571 hypothetical protein; hypothetical protein 2197932 11043054 Acife_2217 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784656.1 2196889 D 743299 CDS YP_004784657.1 344200331 11044441 2197937..2199277 1 NC_015942.1 KEGG: afr:AFE_0570 protoporphyrinogen oxidase; TIGRFAM: Protoporphyrinogen oxidase; PFAM: Amine oxidase; protoporphyrinogen oxidase 2199277 11044441 Acife_2218 Acidithiobacillus ferrivorans SS3 protoporphyrinogen oxidase YP_004784657.1 2197937 D 743299 CDS YP_004784658.1 344200332 11043055 complement(2199291..2200139) 1 NC_015942.1 PFAM: YkuD domain; KEGG: afr:AFE_0569 ErfK/YbiS/YcfS/YnhG family; ErfK/YbiS/YcfS/YnhG family protein 2200139 11043055 Acife_2219 Acidithiobacillus ferrivorans SS3 ErfK/YbiS/YcfS/YnhG family protein YP_004784658.1 2199291 R 743299 CDS YP_004784659.1 344200333 11044442 complement(2200228..2202282) 1 NC_015942.1 TIGRFAM: DNA helicase, ATP-dependent, RecG; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Nucleic acid binding, OB-fold, tRNA/helicase-type; DNA/RNA helicase, C-terminal; KEGG: afr:AFE_0568 ATP-dependent DNA helicase RecG; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; ATP-dependent DNA helicase RecG 2202282 11044442 Acife_2220 Acidithiobacillus ferrivorans SS3 ATP-dependent DNA helicase RecG YP_004784659.1 2200228 R 743299 CDS YP_004784660.1 344200334 11043056 complement(2202284..2202499) 1 NC_015942.1 KEGG: afr:AFE_0567 hypothetical protein; hypothetical protein 2202499 11043056 Acife_2221 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784660.1 2202284 R 743299 CDS YP_004784661.1 344200335 11043057 complement(2202501..2202890) 1 NC_015942.1 KEGG: afr:AFE_0566 endoribonuclease L-PSP, putative; TIGRFAM: YjgF-like protein; PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 2202890 11043057 Acife_2222 Acidithiobacillus ferrivorans SS3 endoribonuclease L-PSP YP_004784661.1 2202501 R 743299 CDS YP_004784662.1 344200336 11044443 complement(2202905..2205187) 1 NC_015942.1 TIGRFAM: RelA/SpoT protein; PFAM: RelA/SpoT; Metal-dependent phosphohydrolase, HD region, subdomain; TGS; Amino acid-binding ACT; KEGG: afe:Lferr_0719 (p)ppGpp synthetase I SpoT/RelA; SMART: Metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA 2205187 11044443 Acife_2223 Acidithiobacillus ferrivorans SS3 (p)ppGpp synthetase I SpoT/RelA YP_004784662.1 2202905 R 743299 CDS YP_004784663.1 344200337 11043058 complement(2205171..2205446) 1 NC_015942.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; HAMAP: DNA-directed RNA polymerase, omega subunit; KEGG: afr:AFE_0564 DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; DNA-directed RNA polymerase subunit omega 2205446 11043058 Acife_2224 Acidithiobacillus ferrivorans SS3 DNA-directed RNA polymerase subunit omega YP_004784663.1 2205171 R 743299 CDS YP_004784664.1 344200338 11044444 complement(2205471..2206109) 1 NC_015942.1 SMART: Guanylate kinase/L-type calcium channel region; TIGRFAM: Guanylate kinase, sub-group; KEGG: afr:AFE_0563 guanylate kinase; HAMAP: Guanylate kinase, sub-group; PFAM: Guanylate kinase; guanylate kinase 2206109 11044444 Acife_2225 Acidithiobacillus ferrivorans SS3 guanylate kinase YP_004784664.1 2205471 R 743299 CDS YP_004784665.1 344200339 11043059 complement(2206116..2206985) 1 NC_015942.1 KEGG: afr:AFE_0562 YicC family protein; TIGRFAM: Conserved hypothetical protein CHP00255; PFAM: Domain of unknown function DUF1732; YicC-like, N-terminal; hypothetical protein 2206985 11043059 Acife_2226 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784665.1 2206116 R 743299 CDS YP_004784666.1 344200340 11043060 2207205..2207567 1 NC_015942.1 KEGG: afr:AFE_0560 hypothetical protein; hypothetical protein 2207567 11043060 Acife_2227 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784666.1 2207205 D 743299 CDS YP_004784667.1 344200341 11043061 complement(2207571..2208053) 1 NC_015942.1 PFAM: Redoxin; KEGG: afr:AFE_0047 hypothetical protein; Redoxin domain-containing protein 2208053 11043061 Acife_2228 Acidithiobacillus ferrivorans SS3 Redoxin domain-containing protein YP_004784667.1 2207571 R 743299 CDS YP_004784668.1 344200342 11043062 complement(2208098..2210416) 1 NC_015942.1 KEGG: afr:AFE_3054 von Willebrand factor type A domain protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; von Willebrand factor type A 2210416 11043062 Acife_2229 Acidithiobacillus ferrivorans SS3 von Willebrand factor type A YP_004784668.1 2208098 R 743299 CDS YP_004784669.1 344200343 11044445 complement(2210469..2211272) 1 NC_015942.1 KEGG: afr:AFE_3053 CbbQ protein; CbbQ protein 2211272 11044445 Acife_2230 Acidithiobacillus ferrivorans SS3 CbbQ protein YP_004784669.1 2210469 R 743299 CDS YP_004784670.1 344200344 11043063 complement(2211425..2211781) 1 NC_015942.1 PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: afr:AFE_3052 ribulose bisphosphate carboxylase, small subunit; ribulose bisphosphate carboxylase small chain 2211781 11043063 Acife_2231 Acidithiobacillus ferrivorans SS3 ribulose bisphosphate carboxylase small chain YP_004784670.1 2211425 R 743299 CDS YP_004784671.1 344200345 11044446 complement(2211860..2213281) 1 NC_015942.1 KEGG: afr:AFE_3051 ribulose bisophosphate carboxylase; HAMAP: Ribulose bisphosphate carboxylase large chain; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal; ribulose bisphosphate carboxylase large chain 2213281 11044446 Acife_2232 Acidithiobacillus ferrivorans SS3 ribulose bisphosphate carboxylase large chain YP_004784671.1 2211860 R 743299 CDS YP_004784672.1 344200346 11043065 2213591..2213683 1 NC_015942.1 hypothetical protein 2213683 11043065 Acife_2234 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784672.1 2213591 D 743299 CDS YP_004784673.1 344200347 11044447 2213710..2214744 1 NC_015942.1 PFAM: Secretion protein HlyD; KEGG: afr:AFE_2861 secretion protein, HlyD family; secretion protein HlyD family protein 2214744 11044447 Acife_2235 Acidithiobacillus ferrivorans SS3 secretion protein HlyD family protein YP_004784673.1 2213710 D 743299 CDS YP_004784674.1 344200348 11043066 2214748..2216475 1 NC_015942.1 KEGG: afr:AFE_2862 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 2216475 11043066 Acife_2236 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004784674.1 2214748 D 743299 CDS YP_004784675.1 344200349 11044448 2216472..2217587 1 NC_015942.1 PFAM: ABC-2 type transporter; KEGG: afr:AFE_2863 ABC transporter, permease protein, putative; ABC transporter 2217587 11044448 Acife_2237 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004784675.1 2216472 D 743299 CDS YP_004784676.1 344200350 11043067 2217587..2218696 1 NC_015942.1 PFAM: ABC-2 type transporter; KEGG: afr:AFE_2864 ABC transporter, permease protein, putative; ABC transporter 2218696 11043067 Acife_2238 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004784676.1 2217587 D 743299 CDS YP_004784677.1 344200351 11043068 2218883..2219173 1 NC_015942.1 KEGG: afr:AFE_1070 DNA-binding protein, HU family; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 2219173 11043068 Acife_2239 Acidithiobacillus ferrivorans SS3 histone family protein DNA-binding protein YP_004784677.1 2218883 D 743299 CDS YP_004784678.1 344200352 11043069 complement(2219235..2219468) 1 NC_015942.1 KEGG: bbr:BB4378 histone protein; hypothetical protein 2219468 11043069 Acife_2240 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784678.1 2219235 R 743299 CDS YP_004784679.1 344200353 11043070 2219830..2220579 1 NC_015942.1 hypothetical protein 2220579 11043070 Acife_2241 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784679.1 2219830 D 743299 CDS YP_004784680.1 344200354 11043071 2220748..2220909 1 NC_015942.1 KEGG: ana:all2689 type I restriction enzyme, modification chain; hypothetical protein 2220909 11043071 Acife_2242 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784680.1 2220748 D 743299 CDS YP_004784681.1 344200355 11043072 2221042..2221554 1 NC_015942.1 PFAM: Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain; KEGG: afe:Lferr_0929 pyridoxamine 5'-phosphate oxidase-like protein; FMN-binding pyridoxamine 5'-phosphate oxidase-like protein 2221554 11043072 Acife_2243 Acidithiobacillus ferrivorans SS3 FMN-binding pyridoxamine 5'-phosphate oxidase-like protein YP_004784681.1 2221042 D 743299 CDS YP_004784682.1 344200356 11043073 2221594..2221719 1 NC_015942.1 hypothetical protein 2221719 11043073 Acife_2244 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784682.1 2221594 D 743299 CDS YP_004784683.1 344200357 11044449 2221754..2221990 1 NC_015942.1 PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: bvi:Bcep1808_0145 SpoVT/AbrB domain-containing protein; SpoVT/AbrB domain-containing protein 2221990 11044449 Acife_2245 Acidithiobacillus ferrivorans SS3 SpoVT/AbrB domain-containing protein YP_004784683.1 2221754 D 743299 CDS YP_004784684.1 344200358 11043074 2221990..2222394 1 NC_015942.1 PFAM: PilT protein, N-terminal; KEGG: avn:Avin_36180 PilT domain-containing protein; PilT protein domain-containing protein 2222394 11043074 Acife_2246 Acidithiobacillus ferrivorans SS3 PilT protein domain-containing protein YP_004784684.1 2221990 D 743299 CDS YP_004784685.1 344200359 11043075 complement(2222406..2222522) 1 NC_015942.1 KEGG: afr:AFE_1597 transposase, degenerate; transposase, degenerate 2222522 11043075 Acife_2247 Acidithiobacillus ferrivorans SS3 transposase, degenerate YP_004784685.1 2222406 R 743299 CDS YP_004784686.1 344200360 11043076 2222746..2222850 1 NC_015942.1 hypothetical protein 2222850 11043076 Acife_2248 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784686.1 2222746 D 743299 CDS YP_004784687.1 344200361 11044450 2222861..2222986 1 NC_015942.1 hypothetical protein 2222986 11044450 Acife_2249 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784687.1 2222861 D 743299 CDS YP_004784688.1 344200362 11043077 2222983..2223903 1 NC_015942.1 PFAM: Restriction endonuclease, type IV-like, Mrr; KEGG: pgi:PG0968 Mrr restriction system protein; restriction endonuclease 2223903 11043077 Acife_2250 Acidithiobacillus ferrivorans SS3 restriction endonuclease YP_004784688.1 2222983 D 743299 CDS YP_004784689.1 344200363 11044451 2223893..2225065 1 NC_015942.1 KEGG: mmh:Mmah_1308 hypothetical protein; hypothetical protein 2225065 11044451 Acife_2251 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784689.1 2223893 D 743299 CDS YP_004784690.1 344200364 11043078 2225120..2227471 1 NC_015942.1 KEGG: bid:Bind_2672 N-6 DNA methylase; TIGRFAM: Restriction endonuclease, type I, EcoRI, M subunit; PFAM: DNA methylase, adenine-specific; type I restriction-modification system, M subunit 2227471 11043078 Acife_2252 Acidithiobacillus ferrivorans SS3 type I restriction-modification system, M subunit YP_004784690.1 2225120 D 743299 CDS YP_004784691.1 344200365 11043079 2227462..2228760 1 NC_015942.1 PFAM: Restriction endonuclease, type I, S subunit, EcoBI; KEGG: bid:Bind_2673 restriction modification system DNA specificity subunit; restriction modification system DNA specificity domain-containing protein 2228760 11043079 Acife_2253 Acidithiobacillus ferrivorans SS3 restriction modification system DNA specificity domain-containing protein YP_004784691.1 2227462 D 743299 CDS YP_004784692.1 344200366 11044452 2228806..2229156 1 NC_015942.1 PFAM: Protein of unknown function DUF891; KEGG: afr:AFE_1384 hypothetical protein; hypothetical protein 2229156 11044452 Acife_2254 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784692.1 2228806 D 743299 CDS YP_004784693.1 344200367 11043080 2229153..2229467 1 NC_015942.1 KEGG: afr:AFE_1383 hypothetical protein; hypothetical protein 2229467 11043080 Acife_2255 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784693.1 2229153 D 743299 CDS YP_004784694.1 344200368 11043081 2229556..2229810 1 NC_015942.1 KEGG: afr:AFE_0889 stability protein StbD, putative; stability protein StbD 2229810 11043081 Acife_2256 Acidithiobacillus ferrivorans SS3 stability protein StbD YP_004784694.1 2229556 D 743299 CDS YP_004784695.1 344200369 11043082 2229800..2230081 1 NC_015942.1 KEGG: afr:AFE_0890 stability protein StbE, putative; TIGRFAM: Addiction module toxin, RelE/StbE; PFAM: Plasmid stabilisation system; RelE/StbE family addiction module toxin 2230081 11043082 Acife_2257 Acidithiobacillus ferrivorans SS3 RelE/StbE family addiction module toxin YP_004784695.1 2229800 D 743299 CDS YP_004784696.1 344200370 11043083 2230085..2233162 1 NC_015942.1 TIGRFAM: Restriction endonuclease, type I, EcoRI, R subunit; PFAM: Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; Restriction endonuclease, type I, R subunit/Type III, Res subunit; KEGG: cyn:Cyan7425_3081 type I site-specific deoxyribonuclease, HsdR family; SMART: DEAD-like helicase, N-terminal; HsdR family type I site-specific deoxyribonuclease 2233162 11043083 Acife_2258 Acidithiobacillus ferrivorans SS3 HsdR family type I site-specific deoxyribonuclease YP_004784696.1 2230085 D 743299 CDS YP_004784697.1 344200371 11043084 2233152..2233892 1 NC_015942.1 PFAM: Protein of unknown function DUF45; KEGG: afr:AFE_0760 hypothetical protein; hypothetical protein 2233892 11043084 Acife_2259 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784697.1 2233152 D 743299 CDS YP_004784698.1 344200372 11043086 complement(2234873..2235859) 1 NC_015942.1 KEGG: afr:AFE_0577 hypothetical protein; hypothetical protein 2235859 11043086 Acife_2261 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784698.1 2234873 R 743299 CDS YP_004784699.1 344200373 11043087 complement(2235927..2237381) 1 NC_015942.1 KEGG: afe:Lferr_0730 para-aminobenzoate synthase subunit I; TIGRFAM: Para-aminobenzoate synthase, component I; PFAM: Chorismate binding, C-terminal; Anthranilate synthase component I, N-terminal; para-aminobenzoate synthase subunit I 2237381 11043087 Acife_2262 Acidithiobacillus ferrivorans SS3 para-aminobenzoate synthase subunit I YP_004784699.1 2235927 R 743299 CDS YP_004784700.1 344200374 11044454 2237484..2238821 1 NC_015942.1 KEGG: afr:AFE_0575 type I secretion outer membrane protein, TolC family; TIGRFAM: Type I secretion outer membrane protein, TolC; PFAM: Outer membrane efflux protein; type I secretion outer membrane protein, TolC family 2238821 11044454 Acife_2263 Acidithiobacillus ferrivorans SS3 type I secretion outer membrane protein, TolC family YP_004784700.1 2237484 D 743299 CDS YP_004784701.1 344200375 11043088 2238848..2240617 1 NC_015942.1 KEGG: afr:AFE_0559 integral membrane protein MviN; TIGRFAM: Flagellin assembly, membrane protein MviN; PFAM: Flagellin assembly, membrane protein MviN; integral membrane protein MviN 2240617 11043088 Acife_2264 Acidithiobacillus ferrivorans SS3 integral membrane protein MviN YP_004784701.1 2238848 D 743299 CDS YP_004784702.1 344200376 11043089 2240610..2241065 1 NC_015942.1 PFAM: Protein of unknown function DUF2203; KEGG: afe:Lferr_0713 hypothetical protein; hypothetical protein 2241065 11043089 Acife_2265 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784702.1 2240610 D 743299 CDS YP_004784703.1 344200377 11043090 2241200..2242138 1 NC_015942.1 TIGRFAM: Riboflavin kinase/FAD synthetase; KEGG: afr:AFE_0557 riboflavin biosynthesis protein RibF; PFAM: FAD synthetase; Riboflavin kinase; riboflavin biosynthesis protein RibF 2242138 11043090 Acife_2266 Acidithiobacillus ferrivorans SS3 riboflavin biosynthesis protein RibF YP_004784703.1 2241200 D 743299 CDS YP_004784704.1 344200378 11043091 2242141..2244954 1 NC_015942.1 TIGRFAM: Isoleucyl-tRNA synthetase, class Ia; HAMAP: Isoleucyl-tRNA synthetase; KEGG: afr:AFE_0556 isoleucyl-tRNA synthetase; Isoleucyl-tRNA synthetase 2244954 11043091 Acife_2267 Acidithiobacillus ferrivorans SS3 Isoleucyl-tRNA synthetase YP_004784704.1 2242141 D 743299 CDS YP_004784705.1 344200379 11044455 2244954..2245412 1 NC_015942.1 TIGRFAM: Peptidase A8, signal peptidase II; HAMAP: Peptidase A8, signal peptidase II; KEGG: afr:AFE_0555 lipoprotein signal peptidase; PFAM: Peptidase A8, signal peptidase II; lipoprotein signal peptidase 2245412 11044455 Acife_2268 Acidithiobacillus ferrivorans SS3 lipoprotein signal peptidase YP_004784705.1 2244954 D 743299 CDS YP_004784706.1 344200380 11043092 2245660..2245878 1 NC_015942.1 KEGG: afr:AFE_0554 hypothetical protein; hypothetical protein 2245878 11043092 Acife_2269 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784706.1 2245660 D 743299 CDS YP_004784707.1 344200381 11043093 complement(2245954..2246700) 1 NC_015942.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: gvi:gll2154 oxidoreductase; short-chain dehydrogenase/reductase SDR 2246700 11043093 Acife_2270 Acidithiobacillus ferrivorans SS3 short-chain dehydrogenase/reductase SDR YP_004784707.1 2245954 R 743299 CDS YP_004784708.1 344200382 11044456 complement(2246697..2247272) 1 NC_015942.1 PFAM: Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: afr:AFE_0553 hypothetical protein; alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen 2247272 11044456 Acife_2271 Acidithiobacillus ferrivorans SS3 alkyl hydroperoxide reductase/ thiol specific antioxidant/ Mal allergen YP_004784708.1 2246697 R 743299 CDS YP_004784709.1 344200383 11043094 complement(2247341..2249104) 1 NC_015942.1 KEGG: afr:AFE_0552 ABC transporter, permease/ATP-binding protein; PFAM: ABC transporter, N-terminal; ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 2249104 11043094 Acife_2272 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004784709.1 2247341 R 743299 CDS YP_004784710.1 344200384 11043095 2249231..2249713 1 NC_015942.1 KEGG: hna:Hneap_1146 hypothetical protein; hypothetical protein 2249713 11043095 Acife_2273 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784710.1 2249231 D 743299 CDS YP_004784711.1 344200385 11043096 complement(2249698..2250531) 1 NC_015942.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: afr:AFE_0551 hydrolase, carbon-nitrogen family; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 2250531 11043096 Acife_2274 Acidithiobacillus ferrivorans SS3 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase YP_004784711.1 2249698 R 743299 CDS YP_004784712.1 344200386 11043097 complement(2250528..2254211) 1 NC_015942.1 KEGG: afe:Lferr_0705 membrane protein; membrane protein 2254211 11043097 Acife_2275 Acidithiobacillus ferrivorans SS3 membrane protein YP_004784712.1 2250528 R 743299 CDS YP_004784713.1 344200387 11043098 2254470..2257334 1 NC_015942.1 KEGG: afr:AFE_0548 glutamate-ammonia-ligase adenylyltransferase; HAMAP: Glutamate-ammonia-ligase adenylyltransferase; PFAM: Glutamate-ammonia ligase adenylyltransferase; PII-uridylyltransferase/Glutamine-synthetase adenylyltransferase; glutamate-ammonia-ligase adenylyltransferase 2257334 11043098 Acife_2276 Acidithiobacillus ferrivorans SS3 glutamate-ammonia-ligase adenylyltransferase YP_004784713.1 2254470 D 743299 CDS YP_004784714.1 344200388 11043099 2257347..2258270 1 NC_015942.1 KEGG: afr:AFE_0547 branched-chain amino acid aminotransferase; TIGRFAM: Branched-chain amino acid aminotransferase I; PFAM: Aminotransferase, class IV; branched-chain amino acid aminotransferase 2258270 11043099 Acife_2277 Acidithiobacillus ferrivorans SS3 branched-chain amino acid aminotransferase YP_004784714.1 2257347 D 743299 CDS YP_004784715.1 344200389 11043100 2258275..2258487 1 NC_015942.1 KEGG: afr:AFE_0546 hypothetical protein; hypothetical protein 2258487 11043100 Acife_2278 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784715.1 2258275 D 743299 CDS YP_004784716.1 344200390 11044457 complement(2258508..2260337) 1 NC_015942.1 KEGG: afr:AFE_0545 thiol:disulfide interchange protein DsbD; HAMAP: Thiol:disulfide interchange protein dsbD; PFAM: Cytochrome c assembly protein, transmembrane region; Thioredoxin domain; thiol:disulfide interchange protein dsbD 2260337 11044457 Acife_2279 Acidithiobacillus ferrivorans SS3 thiol:disulfide interchange protein dsbD YP_004784716.1 2258508 R 743299 CDS YP_004784717.1 344200391 11043101 complement(2260403..2260669) 1 NC_015942.1 hypothetical protein 2260669 11043101 Acife_2280 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784717.1 2260403 R 743299 CDS YP_004784718.1 344200392 11043102 2260733..2261515 1 NC_015942.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: afr:AFE_0544 hypothetical protein; alpha/beta hydrolase fold domain-containing protein 2261515 11043102 Acife_2281 Acidithiobacillus ferrivorans SS3 alpha/beta hydrolase fold domain-containing protein YP_004784718.1 2260733 D 743299 CDS YP_004784719.1 344200393 11043103 2261618..2261908 1 NC_015942.1 KEGG: afr:AFE_0543 co-chaperonin GroES; HAMAP: Chaperonin Cpn10, subgroup; PFAM: Chaperonin Cpn10; 10 kDa chaperonin 2261908 11043103 Acife_2282 Acidithiobacillus ferrivorans SS3 10 kDa chaperonin YP_004784719.1 2261618 D 743299 CDS YP_004784720.1 344200394 11043104 2261956..2263611 1 NC_015942.1 TIGRFAM: Chaperonin Cpn60; HAMAP: 60 kDa chaperonin; KEGG: afr:AFE_0542 chaperonin GroEL; PFAM: Chaperonin Cpn60/TCP-1; 60 kDa chaperonin 2263611 11043104 Acife_2283 Acidithiobacillus ferrivorans SS3 60 kDa chaperonin YP_004784720.1 2261956 D 743299 CDS YP_004784721.1 344200395 11044458 complement(2263716..2264039) 1 NC_015942.1 KEGG: ppd:Ppro_0946 hypothetical protein; hypothetical protein 2264039 11044458 Acife_2284 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784721.1 2263716 R 743299 CDS YP_004784722.1 344200396 11043105 complement(2264026..2264319) 1 NC_015942.1 KEGG: ppd:Ppro_0945 hypothetical protein; hypothetical protein 2264319 11043105 Acife_2285 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784722.1 2264026 R 743299 CDS YP_004784723.1 344200397 11043106 2264538..2265107 1 NC_015942.1 PFAM: Phosphoribosyltransferase; KEGG: afr:AFE_0540 adenine phosphoribosyltransferase; phosphoribosyltransferase 2265107 11043106 Acife_2286 Acidithiobacillus ferrivorans SS3 phosphoribosyltransferase YP_004784723.1 2264538 D 743299 CDS YP_004784724.1 344200398 11044459 2265118..2266791 1 NC_015942.1 PFAM: Sulphate adenylyltransferase; Adenylylsulphate kinase, C-terminal; TIGRFAM: Adenylylsulphate kinase, C-terminal; HAMAP: Adenylyl-sulfate kinase; KEGG: afr:AFE_0539 sulfate adenylyltransferase, putative/adenylylsulfate kinase; adenylyl-sulfate kinase 2266791 11044459 Acife_2287 Acidithiobacillus ferrivorans SS3 adenylyl-sulfate kinase YP_004784724.1 2265118 D 743299 CDS YP_004784725.1 344200399 11043107 2266828..2268357 1 NC_015942.1 PFAM: Protein of unknown function DUF814; Fibronectin-binding A, N-terminal; KEGG: afr:AFE_0538 hypothetical protein; hypothetical protein 2268357 11043107 Acife_2288 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784725.1 2266828 D 743299 CDS YP_004784726.1 344200400 11043108 complement(2268381..2268833) 1 NC_015942.1 KEGG: hoh:Hoch_2836 MerR family transcriptional regulator; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator 2268833 11043108 Acife_2289 Acidithiobacillus ferrivorans SS3 MerR family transcriptional regulator YP_004784726.1 2268381 R 743299 CDS YP_004784727.1 344200401 11043109 complement(2268979..2270631) 1 NC_015942.1 KEGG: tbd:Tbd_1341 putative mercuric reductase; TIGRFAM: Mercuric reductase MerA; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Heavy metal transport/detoxification protein; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; mercuric reductase 2270631 11043109 Acife_2290 Acidithiobacillus ferrivorans SS3 mercuric reductase YP_004784727.1 2268979 R 743299 CDS YP_004784728.1 344200402 11043110 complement(2270664..2270804) 1 NC_015942.1 hypothetical protein 2270804 11043110 Acife_2291 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784728.1 2270664 R 743299 CDS YP_004784729.1 344200403 11043111 2271169..2273433 1 NC_015942.1 KEGG: afr:AFE_1652 oxidoreductase alpha (molybdopterin) subunit; TIGRFAM: Oxidoreductase alpha (molybdopterin) subunit; PFAM: Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region; oxidoreductase alpha (molybdopterin) subunit 2273433 11043111 Acife_2292 Acidithiobacillus ferrivorans SS3 oxidoreductase alpha (molybdopterin) subunit YP_004784729.1 2271169 D 743299 CDS YP_004784730.1 344200404 11043112 2273408..2273704 1 NC_015942.1 KEGG: afr:AFE_1653 hypothetical protein; hypothetical protein 2273704 11043112 Acife_2293 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784730.1 2273408 D 743299 CDS YP_004784731.1 344200405 11043113 2273674..2274513 1 NC_015942.1 TIGRFAM: Formate dehydrogenase, subunit FdhD; HAMAP: Protein fdhD; KEGG: afr:AFE_1654 formate dehydrogenase family accessory protein FdhD; PFAM: Formate dehydrogenase, subunit FdhD; protein fdhD 2274513 11043113 Acife_2294 Acidithiobacillus ferrivorans SS3 protein fdhD YP_004784731.1 2273674 D 743299 CDS YP_004784732.1 344200406 11043114 2274557..2275666 1 NC_015942.1 KEGG: gvi:glr4425 glutathione dependent formaldehyde dehydrogenase; TIGRFAM: Alcohol dehydrogenase class III/S-(hydroxymethyl)glutathione dehydrogenase; PFAM: Alcohol dehydrogenase, zinc-binding; Alcohol dehydrogenase GroES-like; S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 2275666 11043114 Acife_2295 Acidithiobacillus ferrivorans SS3 S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase YP_004784732.1 2274557 D 743299 CDS YP_004784733.1 344200407 11043115 2275783..2276565 1 NC_015942.1 PFAM: Protein of unknown function DUF347; KEGG: afr:AFE_2330 hypothetical protein; hypothetical protein 2276565 11043115 Acife_2296 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784733.1 2275783 D 743299 CDS YP_004784734.1 344200408 11043117 2277493..2278164 1 NC_015942.1 KEGG: yen:YE1183 hypothetical protein; hypothetical protein 2278164 11043117 Acife_2297 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784734.1 2277493 D 743299 CDS YP_004784735.1 344200409 11044460 2278161..2278955 1 NC_015942.1 KEGG: pag:PLES_13401 hypotjetical protein; hypotjetical protein 2278955 11044460 Acife_2298 Acidithiobacillus ferrivorans SS3 hypotjetical protein YP_004784735.1 2278161 D 743299 CDS YP_004784736.1 344200410 11043119 2279513..2280739 1 NC_015942.1 KEGG: rba:RB818 reverse transcriptase/maturase; manually curated; PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; RNA-directed DNA polymerase 2280739 11043119 Acife_2300 Acidithiobacillus ferrivorans SS3 RNA-directed DNA polymerase YP_004784736.1 2279513 D 743299 CDS YP_004784737.1 344200411 11044461 2280752..2281075 1 NC_015942.1 PFAM: Transposase IS3/IS911; KEGG: tin:Tint_3219 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 2281075 11044461 Acife_2301 Acidithiobacillus ferrivorans SS3 transposase IS3/IS911 family protein YP_004784737.1 2280752 D 743299 CDS YP_004784738.1 344200412 11043120 2281072..2281980 1 NC_015942.1 PFAM: Integrase, catalytic core; KEGG: tin:Tint_3218 integrase catalytic region; integrase catalytic subunit 2281980 11043120 Acife_2302 Acidithiobacillus ferrivorans SS3 integrase catalytic subunit YP_004784738.1 2281072 D 743299 CDS YP_004784739.1 344200413 11043121 2282072..2283907 1 NC_015942.1 PFAM: Protein of unknown function DUF262; Protein of unknown function DUF1524 RloF; KEGG: drm:Dred_1817 hypothetical protein; hypothetical protein 2283907 11043121 Acife_2303 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784739.1 2282072 D 743299 CDS YP_004784740.1 344200414 11043122 2284077..2288036 1 NC_015942.1 KEGG: pna:Pnap_4606 superfamily I DNA/RNA helicase; superfamily I DNA/RNA helicase 2288036 11043122 Acife_2305 Acidithiobacillus ferrivorans SS3 superfamily I DNA/RNA helicase YP_004784740.1 2284077 D 743299 CDS YP_004784741.1 344200415 11044463 2288033..2290441 1 NC_015942.1 SMART: Nucleotide binding protein, PINc; KEGG: pna:Pnap_4605 nucleotide binding protein, PINc; nucleotide binding protein PINc 2290441 11044463 Acife_2306 Acidithiobacillus ferrivorans SS3 nucleotide binding protein PINc YP_004784741.1 2288033 D 743299 CDS YP_004784742.1 344200416 11043123 2290446..2291591 1 NC_015942.1 KEGG: pna:Pnap_4604 hypothetical protein; hypothetical protein 2291591 11043123 Acife_2307 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784742.1 2290446 D 743299 CDS YP_004784743.1 344200417 11043124 2291588..2293450 1 NC_015942.1 KEGG: pna:Pnap_4603 ATPase; PFAM: ATPase associated with various cellular activities, AAA-2; SMART: ATPase, AAA+ type, core; ATPase AAA-2 domain-containing protein 2293450 11043124 Acife_2308 Acidithiobacillus ferrivorans SS3 ATPase AAA-2 domain-containing protein YP_004784743.1 2291588 D 743299 CDS YP_004784744.1 344200418 11043125 2293455..2294039 1 NC_015942.1 KEGG: pna:Pnap_4602 radical SAM domain-containing protein; radical SAM domain-containing protein 2294039 11043125 Acife_2309 Acidithiobacillus ferrivorans SS3 radical SAM domain-containing protein YP_004784744.1 2293455 D 743299 CDS YP_004784745.1 344200419 11044464 2294261..2295289 1 NC_015942.1 PFAM: Radical SAM; KEGG: pau:PA14_03340 hypothetical protein; radical SAM domain-containing protein 2295289 11044464 Acife_2310 Acidithiobacillus ferrivorans SS3 radical SAM domain-containing protein YP_004784745.1 2294261 D 743299 CDS YP_004784746.1 344200420 11043126 2295286..2296152 1 NC_015942.1 TIGRFAM: Histidinol phosphate phosphatase, HisJ; PFAM: PHP, C-terminal; KEGG: pau:PA14_03330 hypothetical protein; SMART: Polymerase/histidinol phosphatase, N-terminal; histidinol phosphate phosphatase HisJ family 2296152 11043126 Acife_2311 Acidithiobacillus ferrivorans SS3 histidinol phosphate phosphatase HisJ family YP_004784746.1 2295286 D 743299 CDS YP_004784747.1 344200421 11043127 2296149..2297279 1 NC_015942.1 KEGG: pau:PA14_03320 hypothetical protein; hypothetical protein 2297279 11043127 Acife_2312 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784747.1 2296149 D 743299 CDS YP_004784748.1 344200422 11043128 2297831..2299354 1 NC_015942.1 PFAM: Integrase, catalytic core; KEGG: bxe:Bxe_A1791 putative transposase catalytic subunit; integrase catalytic subunit 2299354 11043128 Acife_2313 Acidithiobacillus ferrivorans SS3 integrase catalytic subunit YP_004784748.1 2297831 D 743299 CDS YP_004784749.1 344200423 11043129 2299366..2300151 1 NC_015942.1 KEGG: afr:AFE_2413 transposase, degenerate; PFAM: IstB-like ATP-binding protein; SMART: ATPase, AAA+ type, core; IstB domain-containing protein ATP-binding protein 2300151 11043129 Acife_2314 Acidithiobacillus ferrivorans SS3 IstB domain-containing protein ATP-binding protein YP_004784749.1 2299366 D 743299 CDS YP_004784750.1 344200424 11043130 complement(2300227..2300472) 1 NC_015942.1 KEGG: pau:PA14_03310 hypothetical protein; hypothetical protein 2300472 11043130 Acife_2315 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784750.1 2300227 R 743299 CDS YP_004784751.1 344200425 11043131 2300714..2302882 1 NC_015942.1 KEGG: pau:PA14_03310 hypothetical protein; hypothetical protein 2302882 11043131 Acife_2316 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784751.1 2300714 D 743299 CDS YP_004784752.1 344200426 11043132 2302908..2304122 1 NC_015942.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: cph:Cpha266_2270 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 2304122 11043132 Acife_2317 Acidithiobacillus ferrivorans SS3 transposase IS204/IS1001/IS1096/IS1165 family protein YP_004784752.1 2302908 D 743299 CDS YP_004784753.1 344200427 11043133 2304667..2305104 1 NC_015942.1 hypothetical protein 2305104 11043133 Acife_2318 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784753.1 2304667 D 743299 CDS YP_004784754.1 344200428 11044465 2305202..2306905 1 NC_015942.1 PFAM: Transposase, IS4-like; KEGG: eba:p2A221 transposase; transposase IS4 family protein 2306905 11044465 Acife_2319 Acidithiobacillus ferrivorans SS3 transposase IS4 family protein YP_004784754.1 2305202 D 743299 CDS YP_004784755.1 344200429 11043134 complement(2307076..2307342) 1 NC_015942.1 hypothetical protein 2307342 11043134 Acife_2320 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784755.1 2307076 R 743299 CDS YP_004784756.1 344200430 11044466 complement(2307439..2308713) 1 NC_015942.1 KEGG: rpx:Rpdx1_2916 hypothetical protein; hypothetical protein 2308713 11044466 Acife_2321 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784756.1 2307439 R 743299 CDS YP_004784757.1 344200431 11043135 complement(2308847..2310154) 1 NC_015942.1 KEGG: afe:Lferr_1430 hypothetical protein; hypothetical protein 2310154 11043135 Acife_2322 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784757.1 2308847 R 743299 CDS YP_004784758.1 344200432 11043136 complement(2310449..2311774) 1 NC_015942.1 PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; KEGG: dar:Daro_3822 RNA-directed DNA polymerase (reverse transcriptase); RNA-directed DNA polymerase 2311774 11043136 Acife_2323 Acidithiobacillus ferrivorans SS3 RNA-directed DNA polymerase YP_004784758.1 2310449 R 743299 CDS YP_004784759.1 344200433 11043137 2312603..2313124 1 NC_015942.1 hypothetical protein 2313124 11043137 Acife_2324 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784759.1 2312603 D 743299 CDS YP_004784760.1 344200434 11043138 2313121..2315640 1 NC_015942.1 hypothetical protein 2315640 11043138 Acife_2325 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784760.1 2313121 D 743299 CDS YP_004784761.1 344200435 11043139 2315627..2316175 1 NC_015942.1 PFAM: PilT protein, N-terminal; PilT protein domain-containing protein 2316175 11043139 Acife_2326 Acidithiobacillus ferrivorans SS3 PilT protein domain-containing protein YP_004784761.1 2315627 D 743299 CDS YP_004784762.1 344200436 11043142 2318768..2319790 1 NC_015942.1 KEGG: sbl:Sbal_4350 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core; integrase catalytic subunit 2319790 11043142 Acife_2329 Acidithiobacillus ferrivorans SS3 integrase catalytic subunit YP_004784762.1 2318768 D 743299 CDS YP_004784763.1 344200437 11043143 2319952..2321475 1 NC_015942.1 PFAM: Transposase, IS4-like; KEGG: afe:Lferr_1749 hypothetical protein; transposase IS4 family protein 2321475 11043143 Acife_2330 Acidithiobacillus ferrivorans SS3 transposase IS4 family protein YP_004784763.1 2319952 D 743299 CDS YP_004784764.1 344200438 11043144 complement(2321420..2321563) 1 NC_015942.1 hypothetical protein 2321563 11043144 Acife_2331 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784764.1 2321420 R 743299 CDS YP_004784765.1 344200439 11044467 complement(2321556..2322533) 1 NC_015942.1 PFAM: Integrase, catalytic core, phage; KEGG: lch:Lcho_0776 integrase family protein; integrase family protein 2322533 11044467 Acife_2332 Acidithiobacillus ferrivorans SS3 integrase family protein YP_004784765.1 2321556 R 743299 CDS YP_004784766.1 344200440 11043146 2323336..2324496 1 NC_015942.1 KEGG: afr:AFE_2785 hypothetical protein; hypothetical protein 2324496 11043146 Acife_2334 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784766.1 2323336 D 743299 CDS YP_004784767.1 344200441 11043149 2325848..2326897 1 NC_015942.1 PFAM: Alcohol dehydrogenase GroES-like; Alcohol dehydrogenase, zinc-binding; KEGG: afr:AFE_0846 alcohol dehydrogenase, zinc-containing; Alcohol dehydrogenase GroES domain-containing protein 2326897 11043149 Acife_2337 Acidithiobacillus ferrivorans SS3 Alcohol dehydrogenase GroES domain-containing protein YP_004784767.1 2325848 D 743299 CDS YP_004784768.1 344200442 11044468 2327248..2328423 1 NC_015942.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: pla:Plav_1952 Rieske (2Fe-2S) domain-containing protein; Rieske (2Fe-2S) iron-sulfur domain-containing protein 2328423 11044468 Acife_2338 Acidithiobacillus ferrivorans SS3 Rieske (2Fe-2S) iron-sulfur domain-containing protein YP_004784768.1 2327248 D 743299 CDS YP_004784769.1 344200443 11043150 2328816..2329595 1 NC_015942.1 KEGG: tcx:Tcr_1803 beta-lactamase-like; beta-lactamase-like protein 2329595 11043150 Acife_2339 Acidithiobacillus ferrivorans SS3 beta-lactamase-like protein YP_004784769.1 2328816 D 743299 CDS YP_004784770.1 344200444 11043151 2329625..2330365 1 NC_015942.1 PFAM: Creatininase; KEGG: dar:Daro_0078 creatininase; Creatininase 2330365 11043151 Acife_2340 Acidithiobacillus ferrivorans SS3 Creatininase YP_004784770.1 2329625 D 743299 CDS YP_004784771.1 344200445 11043152 2330404..2331765 1 NC_015942.1 KEGG: slt:Slit_0094 glutamine synthetase, type III; TIGRFAM: Glutamine synthetase, type III; PFAM: Glutamine synthetase, catalytic region; glutamine synthetase, type III 2331765 11043152 Acife_2341 Acidithiobacillus ferrivorans SS3 glutamine synthetase, type III YP_004784771.1 2330404 D 743299 CDS YP_004784772.1 344200446 11043153 2331848..2332231 1 NC_015942.1 KEGG: bav:BAV0701 lactoylglutathione lyase; TIGRFAM: Glyoxalase I; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2332231 11043153 Acife_2342 Acidithiobacillus ferrivorans SS3 lactoylglutathione lyase YP_004784772.1 2331848 D 743299 CDS YP_004784773.1 344200447 11044469 2332523..2333563 1 NC_015942.1 PFAM: Transposase, IS116/IS110/IS902; KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 2333563 11044469 Acife_2343 Acidithiobacillus ferrivorans SS3 transposase IS116/IS110/IS902 family protein YP_004784773.1 2332523 D 743299 CDS YP_004784774.1 344200448 11043154 2333648..2333863 1 NC_015942.1 KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein; hypothetical protein 2333863 11043154 Acife_2344 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784774.1 2333648 D 743299 CDS YP_004784775.1 344200449 11043155 complement(2334701..2335465) 1 NC_015942.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: pth:PTH_2894 dehydrogenases with different specificities; short-chain dehydrogenase/reductase SDR 2335465 11043155 Acife_2346 Acidithiobacillus ferrivorans SS3 short-chain dehydrogenase/reductase SDR YP_004784775.1 2334701 R 743299 CDS YP_004784776.1 344200450 11043156 complement(2335744..2336946) 1 NC_015942.1 PFAM: Rieske [2Fe-2S] iron-sulphur domain; KEGG: pla:Plav_1952 Rieske (2Fe-2S) domain-containing protein; Rieske (2Fe-2S) iron-sulfur domain-containing protein 2336946 11043156 Acife_2347 Acidithiobacillus ferrivorans SS3 Rieske (2Fe-2S) iron-sulfur domain-containing protein YP_004784776.1 2335744 R 743299 CDS YP_004784777.1 344200451 11044471 2337480..2338520 1 NC_015942.1 PFAM: Transposase, IS116/IS110/IS902; KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 2338520 11044471 Acife_2348 Acidithiobacillus ferrivorans SS3 transposase IS116/IS110/IS902 family protein YP_004784777.1 2337480 D 743299 CDS YP_004784778.1 344200452 11043157 2338871..2339200 1 NC_015942.1 KEGG: afr:AFE_1709 ISAfe4, tranposase orf1; ISAfe4, tranposase orf1 2339200 11043157 Acife_2349 Acidithiobacillus ferrivorans SS3 ISAfe4, tranposase orf1 YP_004784778.1 2338871 D 743299 CDS YP_004784779.1 344200453 11043158 2339191..2339538 1 NC_015942.1 PFAM: Transposase (putative), IS66 Orf2 like; KEGG: afe:Lferr_1327 IS66 Orf2 family protein; IS66 Orf2 family protein 2339538 11043158 Acife_2350 Acidithiobacillus ferrivorans SS3 IS66 Orf2 family protein YP_004784779.1 2339191 D 743299 CDS YP_004784780.1 344200454 11044472 complement(2342395..2343351) 1 NC_015942.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: amv:ACMV_06240 hypothetical protein; hypothetical protein 2343351 11044472 Acife_2354 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784780.1 2342395 R 743299 CDS YP_004784781.1 344200455 11043162 complement(2343638..2344534) 1 NC_015942.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: afr:AFE_3291 NAD-dependent epimerase/dehydratase family protein; NAD-dependent epimerase/dehydratase 2344534 11043162 Acife_2355 Acidithiobacillus ferrivorans SS3 NAD-dependent epimerase/dehydratase YP_004784781.1 2343638 R 743299 CDS YP_004784782.1 344200456 11043163 complement(2344775..2345707) 1 NC_015942.1 PFAM: Ferredoxin; Oxidoreductase FAD/NAD(P)-binding; KEGG: bur:Bcep18194_C7699 ferredoxin; ferredoxin 2345707 11043163 Acife_2356 Acidithiobacillus ferrivorans SS3 ferredoxin YP_004784782.1 2344775 R 743299 CDS YP_004784783.1 344200457 11044473 complement(2347487..2348056) 1 NC_015942.1 PFAM: Flavodoxin-like fold; KEGG: gmc:GY4MC1_1805 NAD(P)H dehydrogenase (quinone); NAD(P)H dehydrogenase (quinone) 2348056 11044473 Acife_2359 Acidithiobacillus ferrivorans SS3 NAD(P)H dehydrogenase (quinone) YP_004784783.1 2347487 R 743299 CDS YP_004784784.1 344200458 11043166 complement(2348158..2349603) 1 NC_015942.1 PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: apt:APA01_41980 cytosine/purines/uracil/thiamine/allantoin transporter; cytosine/purines uracil thiamine allantoin permease 2349603 11043166 Acife_2360 Acidithiobacillus ferrivorans SS3 cytosine/purines uracil thiamine allantoin permease YP_004784784.1 2348158 R 743299 CDS YP_004784785.1 344200459 11043167 2350250..2351278 1 NC_015942.1 PFAM: Transposase, IS116/IS110/IS902; Transposase, IS111A/IS1328/IS1533; KEGG: afr:AFE_3183 ISAfe1, transposase; transposase IS116/IS110/IS902 family protein 2351278 11043167 Acife_2361 Acidithiobacillus ferrivorans SS3 transposase IS116/IS110/IS902 family protein YP_004784785.1 2350250 D 743299 CDS YP_004784786.1 344200460 11044474 complement(2353010..2353777) 1 NC_015942.1 hypothetical protein 2353777 11044474 Acife_2363 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784786.1 2353010 R 743299 CDS YP_004784787.1 344200461 11043169 2354011..2354292 1 NC_015942.1 hypothetical protein 2354292 11043169 Acife_2364 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784787.1 2354011 D 743299 CDS YP_004784788.1 344200462 11044475 2355032..2355931 1 NC_015942.1 KEGG: sea:SeAg_B2096 DNA-binding prophage protein; DNA-binding prophage protein 2355931 11044475 Acife_2365 Acidithiobacillus ferrivorans SS3 DNA-binding prophage protein YP_004784788.1 2355032 D 743299 CDS YP_004784789.1 344200463 11043170 complement(2356272..2359943) 1 NC_015942.1 PFAM: RecF/RecN/SMC protein, N-terminal; KEGG: neu:NE1392 ABC transporter ATPase; SMC domain-containing protein 2359943 11043170 Acife_2366 Acidithiobacillus ferrivorans SS3 SMC domain-containing protein YP_004784789.1 2356272 R 743299 CDS YP_004784790.1 344200464 11043171 complement(2359955..2361184) 1 NC_015942.1 KEGG: maq:Maqu_0567 nuclease SbcCD, D subunit; TIGRFAM: Exonuclease SbcD; PFAM: Metallophosphoesterase; nuclease SbcCD, D subunit 2361184 11043171 Acife_2367 Acidithiobacillus ferrivorans SS3 nuclease SbcCD, D subunit YP_004784790.1 2359955 R 743299 CDS YP_004784791.1 344200465 11044476 2361379..2362011 1 NC_015942.1 PFAM: Protein of unknown function DUF1819, putative inner membrane; KEGG: cpb:Cphamn1_1682 hypothetical protein; hypothetical protein 2362011 11044476 Acife_2368 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784791.1 2361379 D 743299 CDS YP_004784792.1 344200466 11044477 2362008..2362664 1 NC_015942.1 PFAM: Protein of unknown function DUF1788; KEGG: cpb:Cphamn1_1681 hypothetical protein; hypothetical protein 2362664 11044477 Acife_2369 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784792.1 2362008 D 743299 CDS YP_004784793.1 344200467 11043172 2362677..2366216 1 NC_015942.1 KEGG: cpb:Cphamn1_1680 hypothetical protein; hypothetical protein 2366216 11043172 Acife_2370 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784793.1 2362677 D 743299 CDS YP_004784794.1 344200468 11043173 2366230..2368053 1 NC_015942.1 KEGG: cpb:Cphamn1_1677 hypothetical protein; hypothetical protein 2368053 11043173 Acife_2371 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784794.1 2366230 D 743299 CDS YP_004784795.1 344200469 11043174 2368053..2369501 1 NC_015942.1 PFAM: ATPase associated with various cellular activities, AAA-4; KEGG: gca:Galf_0893 putative transcriptional regulator; putative transcriptional regulator 2369501 11043174 Acife_2372 Acidithiobacillus ferrivorans SS3 putative transcriptional regulator YP_004784795.1 2368053 D 743299 CDS YP_004784796.1 344200470 11043175 2369501..2371273 1 NC_015942.1 KEGG: cpb:Cphamn1_1677 hypothetical protein; hypothetical protein 2371273 11043175 Acife_2373 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784796.1 2369501 D 743299 CDS YP_004784797.1 344200471 11044478 2371294..2372460 1 NC_015942.1 PFAM: RecF/RecN/SMC protein, N-terminal; KEGG: ddc:Dd586_0435 SMC domain-containing protein; SMC domain-containing protein 2372460 11044478 Acife_2374 Acidithiobacillus ferrivorans SS3 SMC domain-containing protein YP_004784797.1 2371294 D 743299 CDS YP_004784798.1 344200472 11043176 2372457..2373113 1 NC_015942.1 KEGG: ddc:Dd586_0434 hypothetical protein; hypothetical protein 2373113 11043176 Acife_2375 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784798.1 2372457 D 743299 CDS YP_004784799.1 344200473 11043177 2373113..2375620 1 NC_015942.1 KEGG: dvu:DVU2020 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP02687; PFAM: PglZ domain; hypothetical protein 2375620 11043177 Acife_2376 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784799.1 2373113 D 743299 CDS YP_004784800.1 344200474 11044479 2375643..2377751 1 NC_015942.1 TIGRFAM: Conserved hypothetical protein CHP02688; KEGG: cpb:Cphamn1_1675 hypothetical protein; hypothetical protein 2377751 11044479 Acife_2377 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784800.1 2375643 D 743299 CDS YP_004784801.1 344200475 11043178 complement(2377821..2378024) 1 NC_015942.1 KEGG: afe:Lferr_2037 hypothetical protein; hypothetical protein 2378024 11043178 Acife_2378 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784801.1 2377821 R 743299 CDS YP_004784802.1 344200476 11043179 complement(2378111..2378416) 1 NC_015942.1 hypothetical protein 2378416 11043179 Acife_2379 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784802.1 2378111 R 743299 CDS YP_004784803.1 344200477 11043180 complement(2379046..2380098) 1 NC_015942.1 PFAM: Integrase, catalytic core, phage; KEGG: dds:Ddes_0438 hypothetical protein; integrase family protein 2380098 11043180 Acife_2381 Acidithiobacillus ferrivorans SS3 integrase family protein YP_004784803.1 2379046 R 743299 CDS YP_004784804.1 344200478 11043181 complement(2380341..2382230) 1 NC_015942.1 KEGG: afe:Lferr_1970 RNA polymerase sigma-70 subunit RpoD; TIGRFAM: RNA polymerase sigma factor RpoD, C-terminal; RNA polymerase sigma-70; PFAM: RNA polymerase sigma factor 70, non-essential region; RNA polymerase sigma factor 70, region 1.1; RNA polymerase sigma-70 region 1.2; RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 3; RNA polymerase sigma-70 region 4; RNA polymerase sigma-70 subunit RpoD 2382230 11043181 Acife_2382 Acidithiobacillus ferrivorans SS3 RNA polymerase sigma-70 subunit RpoD YP_004784804.1 2380341 R 743299 CDS YP_004784805.1 344200479 11043182 complement(2382342..2384084) 1 NC_015942.1 KEGG: afr:AFE_2337 DNA primase; TIGRFAM: DNA primase, DnaG; PFAM: DNA primase, catalytic core, N-terminal; Zinc finger, CHC2-type; Toprim domain; DNA primase, DnaB-helicase binding domain; DNA primase 2384084 11043182 Acife_2383 Acidithiobacillus ferrivorans SS3 DNA primase YP_004784805.1 2382342 R 743299 CDS YP_004784806.1 344200480 11043183 complement(2384088..2386424) 1 NC_015942.1 KEGG: afr:AFE_2338 MutS2 family protein; PFAM: DNA mismatch repair protein MutS, C-terminal; Smr protein/MutS2 C-terminal; SMART: DNA mismatch repair protein MutS, C-terminal; DNA mismatch repair protein MutS, core; Smr protein/MutS2 C-terminal; DNA mismatch repair protein MutS domain-containing protein 2386424 11043183 Acife_2384 Acidithiobacillus ferrivorans SS3 DNA mismatch repair protein MutS domain-containing protein YP_004784806.1 2384088 R 743299 CDS YP_004784807.1 344200481 11043184 complement(2386424..2386870) 1 NC_015942.1 KEGG: afr:AFE_2339 GatB/YqeY domain protein; GatB/YqeY domain-containing protein 2386870 11043184 Acife_2385 Acidithiobacillus ferrivorans SS3 GatB/YqeY domain-containing protein YP_004784807.1 2386424 R 743299 CDS YP_004784808.1 344200482 11043185 complement(2386870..2387154) 1 NC_015942.1 TIGRFAM: Ribosomal protein S21; HAMAP: Ribosomal protein S21; KEGG: afr:AFE_2340 30S ribosomal protein S21; PFAM: Ribosomal protein S21; 30S ribosomal protein S21 2387154 11043185 Acife_2386 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S21 YP_004784808.1 2386870 R 743299 CDS YP_004784809.1 344200483 11044482 2387376..2388233 1 NC_015942.1 KEGG: afr:AFE_2342 RNA polymerase sigm-70 factor family; TIGRFAM: RNA polymerase sigma-70; PFAM: RNA polymerase sigma-70 region 2; RNA polymerase sigma-70 region 4; RNA polymerase sigma-32 subunit RpoH 2388233 11044482 Acife_2387 Acidithiobacillus ferrivorans SS3 RNA polymerase sigma-32 subunit RpoH YP_004784809.1 2387376 D 743299 CDS YP_004784810.1 344200484 11043186 complement(2388200..2388823) 1 NC_015942.1 TIGRFAM: Ham1-like protein; HAMAP: Nucleoside-triphosphatase rdgB; KEGG: afr:AFE_2341 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; PFAM: Ham1-like protein; nucleoside-triphosphatase rdgB 2388823 11043186 Acife_2388 Acidithiobacillus ferrivorans SS3 nucleoside-triphosphatase rdgB YP_004784810.1 2388200 R 743299 CDS YP_004784811.1 344200485 11043187 complement(2388820..2389548) 1 NC_015942.1 TIGRFAM: Ribonuclease phosphorolytic, bacterial-type; HAMAP: Ribonuclease phosphorolytic, bacterial-type; KEGG: afr:AFE_2343 ribonuclease PH; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; ribonuclease PH 2389548 11043187 Acife_2389 Acidithiobacillus ferrivorans SS3 ribonuclease PH YP_004784811.1 2388820 R 743299 CDS YP_004784812.1 344200486 11043188 2389678..2390172 1 NC_015942.1 KEGG: afr:AFE_2344 cyclic nucleotide-binding domain protein; PFAM: Cyclic nucleotide-binding; SMART: Cyclic nucleotide-binding; cyclic nucleotide-binding protein 2390172 11043188 Acife_2390 Acidithiobacillus ferrivorans SS3 cyclic nucleotide-binding protein YP_004784812.1 2389678 D 743299 CDS YP_004784813.1 344200487 11043189 complement(2390182..2390736) 1 NC_015942.1 KEGG: afr:AFE_2345 ATP-dependent protease La domain protein; PFAM: Peptidase S16, lon N-terminal; SMART: Peptidase S16, lon N-terminal; peptidase S16 lon domain-containing protein 2390736 11043189 Acife_2391 Acidithiobacillus ferrivorans SS3 peptidase S16 lon domain-containing protein YP_004784813.1 2390182 R 743299 CDS YP_004784814.1 344200488 11043190 2390762..2391919 1 NC_015942.1 TIGRFAM: Putative oxygen-independent coproporphyrinogen III oxidase; PFAM: HemN, C-terminal; Radical SAM; KEGG: afr:AFE_2346 oxygen-independent coproporphyrinogen III oxidase, putative; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 2391919 11043190 Acife_2392 Acidithiobacillus ferrivorans SS3 oxygen-independent coproporphyrinogen III oxidase YP_004784814.1 2390762 D 743299 CDS YP_004784815.1 344200489 11043191 complement(2391934..2392245) 1 NC_015942.1 KEGG: afr:AFE_2347 hypothetical protein; hypothetical protein 2392245 11043191 Acife_2393 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784815.1 2391934 R 743299 CDS YP_004784816.1 344200490 11043192 2392269..2393063 1 NC_015942.1 SMART: RNA-binding S4; manually curated; KEGG: afe:Lferr_1982 pseudouridine synthase; TIGRFAM: Pseudouridine synthase, RsuA and RluB/E/F; PFAM: Pseudouridine synthase, RsuA and RluB/C/D/E/F; RNA-binding S4; pseudouridine synthase Rsu 2393063 11043192 Acife_2394 Acidithiobacillus ferrivorans SS3 pseudouridine synthase Rsu YP_004784816.1 2392269 D 743299 CDS YP_004784817.1 344200491 11043193 2393295..2394821 1 NC_015942.1 KEGG: afr:AFE_2349 multidrug resistance protein; TIGRFAM: Drug resistance transporter EmrB/QacA subfamily; PFAM: Major facilitator superfamily MFS-1; EmrB/QacA subfamily drug resistance transporter 2394821 11043193 Acife_2395 Acidithiobacillus ferrivorans SS3 EmrB/QacA subfamily drug resistance transporter YP_004784817.1 2393295 D 743299 CDS YP_004784818.1 344200492 11044483 complement(2394832..2395785) 1 NC_015942.1 PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; KEGG: afr:AFE_2350 D-alanyl-D-alanine carboxypeptidase, putative; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 2395785 11044483 Acife_2396 Acidithiobacillus ferrivorans SS3 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 YP_004784818.1 2394832 R 743299 CDS YP_004784819.1 344200493 11043194 2395952..2396713 1 NC_015942.1 PFAM: Protein of unknown function DUF81; KEGG: afr:AFE_2351 hypothetical protein; hypothetical protein 2396713 11043194 Acife_2397 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784819.1 2395952 D 743299 CDS YP_004784820.1 344200494 11043195 2396729..2397736 1 NC_015942.1 PFAM: Methyltransferase type 11; KEGG: afr:AFE_2352 hypothetical protein; type 11 methyltransferase 2397736 11043195 Acife_2398 Acidithiobacillus ferrivorans SS3 type 11 methyltransferase YP_004784820.1 2396729 D 743299 CDS YP_004784821.1 344200495 11043197 complement(2398518..2398943) 1 NC_015942.1 PFAM: PilT protein, N-terminal; KEGG: lch:Lcho_4334 PilT domain-containing protein; PilT protein domain-containing protein 2398943 11043197 Acife_2400 Acidithiobacillus ferrivorans SS3 PilT protein domain-containing protein YP_004784821.1 2398518 R 743299 CDS YP_004784822.1 344200496 11044485 complement(2398940..2399188) 1 NC_015942.1 KEGG: nwa:Nwat_2445 Arc domain-/DNA-binding domain-containing protein; Arc domain-/DNA-binding domain-containing protein 2399188 11044485 Acife_2401 Acidithiobacillus ferrivorans SS3 Arc domain-/DNA-binding domain-containing protein YP_004784822.1 2398940 R 743299 CDS YP_004784823.1 344200497 11043199 2399853..2400176 1 NC_015942.1 KEGG: avn:Avin_52410 hypothetical protein; hypothetical protein 2400176 11043199 Acife_2403 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784823.1 2399853 D 743299 CDS YP_004784824.1 344200498 11043200 2400243..2402981 1 NC_015942.1 KEGG: geo:Geob_2869 type III restriction protein res subunit; PFAM: Restriction endonuclease, type I, R subunit/Type III, Res subunit; Restriction endonuclease, type I, EcoRI, R subunit/Type III, Res subunit, N-terminal; DNA/RNA helicase, C-terminal; SMART: DEAD-like helicase, N-terminal; type III restriction protein res subunit 2402981 11043200 Acife_2404 Acidithiobacillus ferrivorans SS3 type III restriction protein res subunit YP_004784824.1 2400243 D 743299 CDS YP_004784825.1 344200499 11043201 2403026..2404114 1 NC_015942.1 KEGG: mca:MCA1889 hypothetical protein; hypothetical protein 2404114 11043201 Acife_2405 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784825.1 2403026 D 743299 CDS YP_004784826.1 344200500 11043202 complement(2404212..2408063) 1 NC_015942.1 KEGG: afr:AFE_2354 phosphoribosylformylglycinamidine synthase; TIGRFAM: Phosphoribosylformylglycinamidine synthase, eukaryote/proteobacteria; PFAM: AIR synthase related protein, C-terminal; AIR synthase related protein; phosphoribosylformylglycinamidine synthase 2408063 11043202 Acife_2406 Acidithiobacillus ferrivorans SS3 phosphoribosylformylglycinamidine synthase YP_004784826.1 2404212 R 743299 CDS YP_004784827.1 344200501 11044486 complement(2408134..2408856) 1 NC_015942.1 TIGRFAM: SAICAR synthetase; HAMAP: Phosphoribosylaminoimidazole-succinocarboxamide synthase; KEGG: afr:AFE_2355 phosphoribosylaminoimidazole-succinocarboxamide synthase; PFAM: SAICAR synthetase; phosphoribosylaminoimidazole-succinocarboxamide synthase 2408856 11044486 Acife_2407 Acidithiobacillus ferrivorans SS3 phosphoribosylaminoimidazole-succinocarboxamide synthase YP_004784827.1 2408134 R 743299 CDS YP_004784828.1 344200502 11044487 complement(2408853..2410160) 1 NC_015942.1 KEGG: afr:AFE_2356 adenylosuccinate lyase; TIGRFAM: Adenylosuccinate lyase; PFAM: Fumarate lyase; Adenylosuccinate lyase, C-terminal; adenylosuccinate lyase 2410160 11044487 Acife_2408 Acidithiobacillus ferrivorans SS3 adenylosuccinate lyase YP_004784828.1 2408853 R 743299 CDS YP_004784829.1 344200503 11043203 complement(2410157..2411284) 1 NC_015942.1 KEGG: afr:AFE_2357 lipoprotein, putative; lipoprotein 2411284 11043203 Acife_2409 Acidithiobacillus ferrivorans SS3 lipoprotein YP_004784829.1 2410157 R 743299 CDS YP_004784830.1 344200504 11043204 complement(2411322..2412197) 1 NC_015942.1 TIGRFAM: Dihydrodipicolinate synthase subfamily; HAMAP: Dihydrodipicolinate synthase; KEGG: afr:AFE_2358 dihydrodipicolinate synthase; PFAM: Dihydrodipicolinate synthetase; dihydrodipicolinate synthase 2412197 11043204 Acife_2410 Acidithiobacillus ferrivorans SS3 dihydrodipicolinate synthase YP_004784830.1 2411322 R 743299 CDS YP_004784831.1 344200505 11043206 complement(2412480..2413133) 1 NC_015942.1 KEGG: afr:AFE_2360 channel protein, hemolysin III family; TIGRFAM: HylII; PFAM: Hly-III related; hemolysin III family channel protein 2413133 11043206 Acife_2411 Acidithiobacillus ferrivorans SS3 hemolysin III family channel protein YP_004784831.1 2412480 R 743299 CDS YP_004784832.1 344200506 11044488 complement(2413198..2414529) 1 NC_015942.1 KEGG: afr:AFE_2361 N-acetylmuramoyl-L-alanine amidase, putative; PFAM: Cell wall hydrolase/autolysin, catalytic; SMART: Cell wall hydrolase/autolysin, catalytic; cell wall hydrolase/autolysin 2414529 11044488 Acife_2412 Acidithiobacillus ferrivorans SS3 cell wall hydrolase/autolysin YP_004784832.1 2413198 R 743299 CDS YP_004784833.1 344200507 11044489 complement(2414574..2414999) 1 NC_015942.1 KEGG: afr:AFE_2362 thioredoxin; TIGRFAM: Thioredoxin; PFAM: Thioredoxin domain; thioredoxin 2414999 11044489 Acife_2413 Acidithiobacillus ferrivorans SS3 thioredoxin YP_004784833.1 2414574 R 743299 CDS YP_004784834.1 344200508 11043207 complement(2415036..2415320) 1 NC_015942.1 KEGG: afr:AFE_2363 glutaredoxin 3; TIGRFAM: Glutaredoxin, GrxC; PFAM: Glutaredoxin; glutaredoxin 3 2415320 11043207 Acife_2414 Acidithiobacillus ferrivorans SS3 glutaredoxin 3 YP_004784834.1 2415036 R 743299 CDS YP_004784835.1 344200509 11043208 complement(2415323..2415748) 1 NC_015942.1 KEGG: afr:AFE_2364 rhodanese-like domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; rhodanese-like protein 2415748 11043208 Acife_2415 Acidithiobacillus ferrivorans SS3 rhodanese-like protein YP_004784835.1 2415323 R 743299 CDS YP_004784836.1 344200510 11043209 complement(2415752..2415973) 1 NC_015942.1 KEGG: afr:AFE_2365 hypothetical protein; hypothetical protein 2415973 11043209 Acife_2416 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784836.1 2415752 R 743299 CDS YP_004784837.1 344200511 11043210 complement(2415980..2419255) 1 NC_015942.1 PFAM: Acriflavin resistance protein; KEGG: afr:AFE_2366 transporter, AcrB/AcrD/AcrF family; acriflavin resistance protein 2419255 11043210 Acife_2417 Acidithiobacillus ferrivorans SS3 acriflavin resistance protein YP_004784837.1 2415980 R 743299 CDS YP_004784838.1 344200512 11043211 complement(2419248..2420330) 1 NC_015942.1 KEGG: afr:AFE_2367 efflux transporter, RND family, MFP subunit; TIGRFAM: Secretion protein HlyD; PFAM: Secretion protein HlyD; RND family efflux transporter MFP subunit 2420330 11043211 Acife_2418 Acidithiobacillus ferrivorans SS3 RND family efflux transporter MFP subunit YP_004784838.1 2419248 R 743299 CDS YP_004784839.1 344200513 11043212 complement(2420327..2421748) 1 NC_015942.1 PFAM: Outer membrane efflux protein; KEGG: afr:AFE_2368 outer membrane efflux protein; outer membrane efflux protein 2421748 11043212 Acife_2419 Acidithiobacillus ferrivorans SS3 outer membrane efflux protein YP_004784839.1 2420327 R 743299 CDS YP_004784840.1 344200514 11043213 2421858..2422088 1 NC_015942.1 hypothetical protein 2422088 11043213 Acife_2420 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784840.1 2421858 D 743299 CDS YP_004784841.1 344200515 11043214 complement(2422016..2422318) 1 NC_015942.1 KEGG: afr:AFE_2369 transcriptional regulator, ArsR family; PFAM: HTH transcriptional regulator, ArsR; SMART: HTH transcriptional regulator, ArsR; regulatory protein ArsR 2422318 11043214 Acife_2421 Acidithiobacillus ferrivorans SS3 regulatory protein ArsR YP_004784841.1 2422016 R 743299 CDS YP_004784842.1 344200516 11043216 complement(2422618..2424090) 1 NC_015942.1 KEGG: afr:AFE_2383 3-octaprenyl-4-hydroxybenzoate carboxy-lyase; TIGRFAM: Carboxylyase-related; PFAM: Carboxylyase-related; UbiD family decarboxylase 2424090 11043216 Acife_2422 Acidithiobacillus ferrivorans SS3 UbiD family decarboxylase YP_004784842.1 2422618 R 743299 CDS YP_004784843.1 344200517 11044490 complement(2424115..2424987) 1 NC_015942.1 KEGG: afr:AFE_2384 hypothetical protein; hypothetical protein 2424987 11044490 Acife_2423 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784843.1 2424115 R 743299 CDS YP_004784844.1 344200518 11044491 complement(2425000..2425392) 1 NC_015942.1 PFAM: Sterol-binding; KEGG: afr:AFE_2385 SCP-2 sterol transfer family protein; Sterol-binding domain-containing protein 2425392 11044491 Acife_2424 Acidithiobacillus ferrivorans SS3 Sterol-binding domain-containing protein YP_004784844.1 2425000 R 743299 CDS YP_004784845.1 344200519 11043217 complement(2425510..2426259) 1 NC_015942.1 PFAM: UBA/THIF-type NAD/FAD binding fold; KEGG: afr:AFE_2386 HesA/MoeB/ThiF family protein; UBA/THIF-type NAD/FAD binding protein 2426259 11043217 Acife_2425 Acidithiobacillus ferrivorans SS3 UBA/THIF-type NAD/FAD binding protein YP_004784845.1 2425510 R 743299 CDS YP_004784846.1 344200520 11043218 complement(2426256..2427026) 1 NC_015942.1 KEGG: afr:AFE_2387 hydrolase, TatD family; TIGRFAM: Deoxyribonuclease, TatD Mg-dependent, prokaryote; PFAM: Deoxyribonuclease, TatD-related; hydrolase, TatD family 2427026 11043218 Acife_2426 Acidithiobacillus ferrivorans SS3 hydrolase, TatD family YP_004784846.1 2426256 R 743299 CDS YP_004784847.1 344200521 11043219 2427200..2428429 1 NC_015942.1 KEGG: afr:AFE_2388 2-octaprenyl-6-methoxyphenol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: Monooxygenase, FAD-binding; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 2428429 11043219 Acife_2427 Acidithiobacillus ferrivorans SS3 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_004784847.1 2427200 D 743299 CDS YP_004784848.1 344200522 11043220 2428419..2429606 1 NC_015942.1 KEGG: afr:AFE_2389 2-octaprenyl-6-methoxyphenol hydroxylase; TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6; PFAM: FAD dependent oxidoreductase; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase 2429606 11043220 Acife_2428 Acidithiobacillus ferrivorans SS3 UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase YP_004784848.1 2428419 D 743299 CDS YP_004784849.1 344200523 11044492 2429618..2429881 1 NC_015942.1 PFAM: Protein of unknown function DUF526; KEGG: afr:AFE_2390 hypothetical protein; hypothetical protein 2429881 11044492 Acife_2429 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784849.1 2429618 D 743299 CDS YP_004784850.1 344200524 11044493 2429885..2431396 1 NC_015942.1 TIGRFAM: Mg chelatase-related protein; PFAM: Magnesium chelatase, ChlI subunit; KEGG: tbd:Tbd_0237 Mg chelatase-related protein; SMART: ATPase, AAA+ type, core; Mg chelatase subunit ChlI 2431396 11044493 Acife_2430 Acidithiobacillus ferrivorans SS3 Mg chelatase subunit ChlI YP_004784850.1 2429885 D 743299 CDS YP_004784851.1 344200525 11043221 complement(2431522..2432979) 1 NC_015942.1 PFAM: Catalase related subgroup; Catalase-related immune responsive; KEGG: hau:Haur_0032 catalase; catalase related subgroup domain-containing protein 2432979 11043221 Acife_2431 Acidithiobacillus ferrivorans SS3 catalase related subgroup domain-containing protein YP_004784851.1 2431522 R 743299 CDS YP_004784852.1 344200526 11043222 complement(2433149..2433592) 1 NC_015942.1 PFAM: Sel1-like; KEGG: afr:AFE_2513 hypothetical protein; Sel1 domain-containing protein repeat-containing protein 2433592 11043222 Acife_2432 Acidithiobacillus ferrivorans SS3 Sel1 domain-containing protein repeat-containing protein YP_004784852.1 2433149 R 743299 CDS YP_004784853.1 344200527 11043223 complement(2433617..2435236) 1 NC_015942.1 TIGRFAM: Peptide chain release factor 3; Small GTP-binding protein; HAMAP: Peptide chain release factor 3; KEGG: afr:AFE_2514 peptide chain release factor 3; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; peptide chain release factor 3 2435236 11043223 Acife_2433 Acidithiobacillus ferrivorans SS3 peptide chain release factor 3 YP_004784853.1 2433617 R 743299 CDS YP_004784854.1 344200528 11043224 complement(2435243..2435713) 1 NC_015942.1 KEGG: afr:AFE_2515 ribosomal-protein-alanine acetyltransferase; TIGRFAM: Ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase 2435713 11043224 Acife_2434 Acidithiobacillus ferrivorans SS3 ribosomal-protein-alanine acetyltransferase YP_004784854.1 2435243 R 743299 CDS YP_004784855.1 344200529 11044494 complement(2435710..2436384) 1 NC_015942.1 KEGG: afr:AFE_2516 hypothetical protein; TIGRFAM: universal protein YeaZ; PFAM: Peptidase M22, glycoprotease; hypothetical protein 2436384 11044494 Acife_2435 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784855.1 2435710 R 743299 CDS YP_004784856.1 344200530 11044495 complement(2436384..2438309) 1 NC_015942.1 SMART: Helicase, ATP-dependent, c2 type; DEAD-like helicase, N-terminal; KEGG: afr:AFE_2517 ATP-dependent helicase, DEXD family; helicase c2 2438309 11044495 Acife_2436 Acidithiobacillus ferrivorans SS3 helicase c2 YP_004784856.1 2436384 R 743299 CDS YP_004784857.1 344200531 11043225 2438379..2438735 1 NC_015942.1 KEGG: afr:AFE_2519 hypothetical protein; hypothetical protein 2438735 11043225 Acife_2437 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784857.1 2438379 D 743299 CDS YP_004784858.1 344200532 11043226 2438844..2439038 1 NC_015942.1 KEGG: afr:AFE_1853 hypothetical protein; hypothetical protein 2439038 11043226 Acife_2438 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784858.1 2438844 D 743299 CDS YP_004784859.1 344200533 11043227 2439025..2439273 1 NC_015942.1 manually curated; KEGG: afr:AFE_1852 hypothetical protein; hypothetical protein 2439273 11043227 Acife_2439 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784859.1 2439025 D 743299 CDS YP_004784860.1 344200534 11043228 complement(2439379..2440479) 1 NC_015942.1 PFAM: NLP/P60; KEGG: afr:AFE_2520 NLP/P60 family protein; NLP/P60 protein 2440479 11043228 Acife_2440 Acidithiobacillus ferrivorans SS3 NLP/P60 protein YP_004784860.1 2439379 R 743299 CDS YP_004784861.1 344200535 11044496 complement(2440588..2440737) 1 NC_015942.1 hypothetical protein 2440737 11044496 Acife_2441 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784861.1 2440588 R 743299 CDS YP_004784862.1 344200536 11044497 2440898..2441542 1 NC_015942.1 KEGG: tin:Tint_0706 hypothetical protein; hypothetical protein 2441542 11044497 Acife_2442 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784862.1 2440898 D 743299 CDS YP_004784863.1 344200537 11043229 2441638..2442888 1 NC_015942.1 PFAM: Carbohydrate-selective porin OprB; KEGG: afr:AFE_2522 carbohydrate-selective porin, OprB family; carbohydrate-selective porin OprB 2442888 11043229 Acife_2443 Acidithiobacillus ferrivorans SS3 carbohydrate-selective porin OprB YP_004784863.1 2441638 D 743299 CDS YP_004784864.1 344200538 11043230 2442906..2443172 1 NC_015942.1 PFAM: Ferrous iron transporter, FeoA subunit; KEGG: afr:AFE_2523 FeoA family protein; FeoA family protein 2443172 11043230 Acife_2444 Acidithiobacillus ferrivorans SS3 FeoA family protein YP_004784864.1 2442906 D 743299 CDS YP_004784865.1 344200539 11043231 2443169..2445517 1 NC_015942.1 KEGG: afe:Lferr_2152 ferrous iron transport protein B; TIGRFAM: Ferrous iron transport protein B; Small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; Ferrous iron transport protein B, N-terminal; Nucleoside recognition; Ferrous iron transport protein B, C-terminal; ferrous iron transport protein B 2445517 11043231 Acife_2445 Acidithiobacillus ferrivorans SS3 ferrous iron transport protein B YP_004784865.1 2443169 D 743299 CDS YP_004784866.1 344200540 11043232 2445514..2445846 1 NC_015942.1 PFAM: FeoC like transcriptional regulator; KEGG: afr:AFE_2525 hypothetical protein; hypothetical protein 2445846 11043232 Acife_2446 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784866.1 2445514 D 743299 CDS YP_004784867.1 344200541 11043233 2446146..2447018 1 NC_015942.1 KEGG: afr:AFE_2526 hydrolase, carbon-nitrogen family; TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; N-carbamoylputrescine amidase 2447018 11043233 Acife_2447 Acidithiobacillus ferrivorans SS3 N-carbamoylputrescine amidase YP_004784867.1 2446146 D 743299 CDS YP_004784868.1 344200542 11043234 2447011..2447754 1 NC_015942.1 PFAM: Peptidase C26; KEGG: afr:AFE_2528 glutamine amidotransferase, class I; peptidase C26 2447754 11043234 Acife_2448 Acidithiobacillus ferrivorans SS3 peptidase C26 YP_004784868.1 2447011 D 743299 CDS YP_004784869.1 344200543 11043235 complement(2447751..2448398) 1 NC_015942.1 PFAM: SNARE associated Golgi protein; KEGG: afr:AFE_2527 membrane protein, DedA family; hypothetical protein 2448398 11043235 Acife_2449 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784869.1 2447751 R 743299 CDS YP_004784870.1 344200544 11043236 complement(2448430..2448786) 1 NC_015942.1 KEGG: afr:AFE_2529 hypothetical protein; hypothetical protein 2448786 11043236 Acife_2450 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784870.1 2448430 R 743299 CDS YP_004784871.1 344200545 11043237 complement(2448783..2449535) 1 NC_015942.1 KEGG: afr:AFE_2530 hypothetical protein; hypothetical protein 2449535 11043237 Acife_2451 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784871.1 2448783 R 743299 CDS YP_004784872.1 344200546 11043238 complement(2449537..2450463) 1 NC_015942.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_2531 transcriptional regulator, LysR family; LysR family transcriptional regulator 2450463 11043238 Acife_2452 Acidithiobacillus ferrivorans SS3 LysR family transcriptional regulator YP_004784872.1 2449537 R 743299 CDS YP_004784873.1 344200547 11044498 2450549..2451151 1 NC_015942.1 KEGG: afr:AFE_2532 hypothetical protein; hypothetical protein 2451151 11044498 Acife_2453 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784873.1 2450549 D 743299 CDS YP_004784874.1 344200548 11044499 complement(2451173..2452318) 1 NC_015942.1 PFAM: Aldo/keto reductase; KEGG: afr:AFE_2533 oxidoreductase, aldo/keto reductase family; aldo/keto reductase 2452318 11044499 Acife_2454 Acidithiobacillus ferrivorans SS3 aldo/keto reductase YP_004784874.1 2451173 R 743299 CDS YP_004784875.1 344200549 11043239 complement(2452315..2453529) 1 NC_015942.1 PFAM: Histone deacetylase superfamily; KEGG: afe:Lferr_2162 histone deacetylase superfamily; histone deacetylase superfamily 2453529 11043239 Acife_2455 Acidithiobacillus ferrivorans SS3 histone deacetylase superfamily YP_004784875.1 2452315 R 743299 CDS YP_004784876.1 344200550 11043240 complement(2453526..2456024) 1 NC_015942.1 SMART: von Willebrand factor, type A; KEGG: afe:Lferr_2163 von Willebrand factor type A; von Willebrand factor type A 2456024 11043240 Acife_2456 Acidithiobacillus ferrivorans SS3 von Willebrand factor type A YP_004784876.1 2453526 R 743299 CDS YP_004784877.1 344200551 11043241 complement(2456034..2456864) 1 NC_015942.1 PFAM: ATPase associated with various cellular activities, AAA-5; CbbQ/NirQ/NorQ C-terminal; KEGG: afr:AFE_2536 CbbQ/NirQ/NorQ/GpvN family protein; ATPase 2456864 11043241 Acife_2457 Acidithiobacillus ferrivorans SS3 ATPase YP_004784877.1 2456034 R 743299 CDS YP_004784878.1 344200552 11043242 complement(2456861..2457262) 1 NC_015942.1 KEGG: afr:AFE_2537 hypothetical protein; hypothetical protein 2457262 11043242 Acife_2458 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784878.1 2456861 R 743299 CDS YP_004784879.1 344200553 11043243 2457388..2457711 1 NC_015942.1 KEGG: afe:Lferr_2166 hypothetical protein; hypothetical protein 2457711 11043243 Acife_2459 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784879.1 2457388 D 743299 CDS YP_004784880.1 344200554 11043244 complement(2457770..2458147) 1 NC_015942.1 KEGG: afe:Lferr_2167 hypothetical protein; hypothetical protein 2458147 11043244 Acife_2460 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784880.1 2457770 R 743299 CDS YP_004784881.1 344200555 11043245 complement(2458199..2459206) 1 NC_015942.1 PFAM: Biotin/lipoate A/B protein ligase; KEGG: afe:Lferr_2168 biotin/lipoate A/B protein ligase; biotin/lipoate A/B protein ligase 2459206 11043245 Acife_2461 Acidithiobacillus ferrivorans SS3 biotin/lipoate A/B protein ligase YP_004784881.1 2458199 R 743299 CDS YP_004784882.1 344200556 11044500 complement(2459250..2459660) 1 NC_015942.1 KEGG: afr:AFE_2541 hypothetical protein; hypothetical protein 2459660 11044500 Acife_2462 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784882.1 2459250 R 743299 CDS YP_004784883.1 344200557 11043246 complement(2459783..2461090) 1 NC_015942.1 PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: afr:AFE_2542 outer membrane protein, OMPP1/FadL/TodX family; aromatic hydrocarbon degradation membrane protein 2461090 11043246 Acife_2463 Acidithiobacillus ferrivorans SS3 aromatic hydrocarbon degradation membrane protein YP_004784883.1 2459783 R 743299 CDS YP_004784884.1 344200558 11043247 complement(2461338..2462474) 1 NC_015942.1 KEGG: afr:AFE_2543 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; radical SAM domain-containing protein 2462474 11043247 Acife_2464 Acidithiobacillus ferrivorans SS3 radical SAM domain-containing protein YP_004784884.1 2461338 R 743299 CDS YP_004784885.1 344200559 11043248 complement(2462499..2463560) 1 NC_015942.1 KEGG: afr:AFE_2544 geranylgeranyl reductase family protein; TIGRFAM: Geranylgeranyl reductase, plant/prokaryotic; PFAM: Fumarate reductase/succinate dehydrogenase flavoprotein, N-terminal; geranylgeranyl reductase 2463560 11043248 Acife_2465 Acidithiobacillus ferrivorans SS3 geranylgeranyl reductase YP_004784885.1 2462499 R 743299 CDS YP_004784886.1 344200560 11043249 complement(2463557..2464627) 1 NC_015942.1 PFAM: Biotin/lipoate A/B protein ligase; KEGG: afr:AFE_2545 lipoate-protein ligase A, putative; biotin/lipoate A/B protein ligase 2464627 11043249 Acife_2466 Acidithiobacillus ferrivorans SS3 biotin/lipoate A/B protein ligase YP_004784886.1 2463557 R 743299 CDS YP_004784887.1 344200561 11044501 complement(2464676..2465797) 1 NC_015942.1 KEGG: afr:AFE_2546 radical SAM domain protein; PFAM: Radical SAM; SMART: Elongator protein 3/MiaB/NifB; radical SAM domain-containing protein 2465797 11044501 Acife_2467 Acidithiobacillus ferrivorans SS3 radical SAM domain-containing protein YP_004784887.1 2464676 R 743299 CDS YP_004784888.1 344200562 11043250 complement(2465881..2466318) 1 NC_015942.1 KEGG: afr:AFE_2547 glycine cleavage system H protein, putative; HAMAP: Glycine cleavage H-protein; PFAM: Glycine cleavage H-protein; glycine cleavage system H protein 2466318 11043250 Acife_2468 Acidithiobacillus ferrivorans SS3 glycine cleavage system H protein YP_004784888.1 2465881 R 743299 CDS YP_004784889.1 344200563 11043251 complement(2466377..2466772) 1 NC_015942.1 KEGG: afr:AFE_2548 hypothetical protein; hypothetical protein 2466772 11043251 Acife_2469 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784889.1 2466377 R 743299 CDS YP_004784890.1 344200564 11043252 complement(2466769..2467215) 1 NC_015942.1 PFAM: Glycine cleavage H-protein; KEGG: afr:AFE_2549 glycine cleavage system protein H, putative; glycine cleavage H-protein 2467215 11043252 Acife_2470 Acidithiobacillus ferrivorans SS3 glycine cleavage H-protein YP_004784890.1 2466769 R 743299 CDS YP_004784891.1 344200565 11043253 complement(2467282..2468193) 1 NC_015942.1 PFAM: Cysteine-rich region, CCG; KEGG: afr:AFE_2550 succinate dehydrogenase/fumarate reductase, C subunit; hypothetical protein 2468193 11043253 Acife_2471 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784891.1 2467282 R 743299 CDS YP_004784892.1 344200566 11043254 complement(2468186..2468905) 1 NC_015942.1 KEGG: afr:AFE_2551 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 2468905 11043254 Acife_2472 Acidithiobacillus ferrivorans SS3 iron-sulfur cluster-binding protein YP_004784892.1 2468186 R 743299 CDS YP_004784893.1 344200567 11043255 complement(2468929..2469747) 1 NC_015942.1 KEGG: afr:AFE_2552 hypothetical protein; hypothetical protein 2469747 11043255 Acife_2473 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784893.1 2468929 R 743299 CDS YP_004784894.1 344200568 11044502 complement(2469737..2470792) 1 NC_015942.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afr:AFE_2553 pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2470792 11044502 Acife_2474 Acidithiobacillus ferrivorans SS3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004784894.1 2469737 R 743299 CDS YP_004784895.1 344200569 11043256 complement(2470805..2472148) 1 NC_015942.1 PFAM: Cysteine-rich region, CCG; KEGG: afr:AFE_2554 heterodisulfide reductase subunit B, homolog; hypothetical protein 2472148 11043256 Acife_2475 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784895.1 2470805 R 743299 CDS YP_004784896.1 344200570 11043257 complement(2472159..2472845) 1 NC_015942.1 KEGG: afr:AFE_2555 iron-sulfur cluster-binding protein; iron-sulfur cluster-binding protein 2472845 11043257 Acife_2476 Acidithiobacillus ferrivorans SS3 iron-sulfur cluster-binding protein YP_004784896.1 2472159 R 743299 CDS YP_004784897.1 344200571 11043258 complement(2472909..2473379) 1 NC_015942.1 KEGG: afr:AFE_2556 hypothetical protein; hypothetical protein 2473379 11043258 Acife_2477 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784897.1 2472909 R 743299 CDS YP_004784898.1 344200572 11043259 complement(2473424..2473654) 1 NC_015942.1 PFAM: SirA-like; KEGG: afr:AFE_2557 hypothetical protein; SirA-like domain-containing protein 2473654 11043259 Acife_2478 Acidithiobacillus ferrivorans SS3 SirA-like domain-containing protein YP_004784898.1 2473424 R 743299 CDS YP_004784899.1 344200573 11044503 complement(2473775..2474107) 1 NC_015942.1 KEGG: afr:AFE_2558 rhodanese-like domain protein; PFAM: Rhodanese-like; SMART: Rhodanese-like; rhodanese-like protein 2474107 11044503 Acife_2479 Acidithiobacillus ferrivorans SS3 rhodanese-like protein YP_004784899.1 2473775 R 743299 CDS YP_004784900.1 344200574 11044504 complement(2474208..2475236) 1 NC_015942.1 TIGRFAM: Molybdenum cofactor biosynthesis protein A; PFAM: Molybdenum cofactor synthesis C-terminal; Radical SAM; KEGG: afr:AFE_2559 molybdenum cofactor biosynthesis protein A; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 2475236 11044504 Acife_2480 Acidithiobacillus ferrivorans SS3 molybdenum cofactor biosynthesis protein A YP_004784900.1 2474208 R 743299 CDS YP_004784901.1 344200575 11044505 complement(2475300..2476238) 1 NC_015942.1 PFAM: DMSO reductase anchor subunit (DmsC); KEGG: tkm:TK90_0146 DMSO reductase anchor subunit (DmsC); DMSO reductase anchor subunit DmsC 2476238 11044505 Acife_2481 Acidithiobacillus ferrivorans SS3 DMSO reductase anchor subunit DmsC YP_004784901.1 2475300 R 743299 CDS YP_004784902.1 344200576 11044506 complement(2476248..2476940) 1 NC_015942.1 PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: tbd:Tbd_0571 DMSO reductase chain B; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein 2476940 11044506 Acife_2482 Acidithiobacillus ferrivorans SS3 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_004784902.1 2476248 R 743299 CDS YP_004784903.1 344200577 11043260 complement(2476959..2479817) 1 NC_015942.1 PFAM: Molybdopterin oxidoreductase Fe4S4 region; Molybdopterin oxidoreductase; Molydopterin dinucleotide-binding region; KEGG: tkm:TK90_0144 nitrate reductase; molybdopterin oxidoreductase Fe4S4 region 2479817 11043260 Acife_2483 Acidithiobacillus ferrivorans SS3 molybdopterin oxidoreductase Fe4S4 region YP_004784903.1 2476959 R 743299 CDS YP_004784904.1 344200578 11043261 2479996..2480301 1 NC_015942.1 KEGG: afr:AFE_2560 hypothetical protein; hypothetical protein 2480301 11043261 Acife_2484 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784904.1 2479996 D 743299 CDS YP_004784905.1 344200579 11043262 complement(2480306..2480815) 1 NC_015942.1 KEGG: afr:AFE_2561 molybdenum cofactor biosynthesis protein C; TIGRFAM: Molybdopterin cofactor biosynthesis MoaC region; PFAM: Molybdopterin cofactor biosynthesis MoaC region; molybdenum cofactor biosynthesis protein C 2480815 11043262 Acife_2485 Acidithiobacillus ferrivorans SS3 molybdenum cofactor biosynthesis protein C YP_004784905.1 2480306 R 743299 CDS YP_004784906.1 344200580 11043263 2480872..2482401 1 NC_015942.1 KEGG: drt:Dret_0095 phosphonate ABC transporter, periplasmic phosphonate-binding protein; hypothetical protein 2482401 11043263 Acife_2486 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784906.1 2480872 D 743299 CDS YP_004784907.1 344200581 11044507 2482398..2483972 1 NC_015942.1 KEGG: afr:AFE_0026 sensor histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; nitrogen specific signal transduction histidine kinase NtrB 2483972 11044507 Acife_2487 Acidithiobacillus ferrivorans SS3 nitrogen specific signal transduction histidine kinase NtrB YP_004784907.1 2482398 D 743299 CDS YP_004784908.1 344200582 11044508 2484003..2485373 1 NC_015942.1 KEGG: afr:AFE_0027 sigma-54 dependent transcriptional regulator/response regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; two component sigma-54 specific Fis family transcriptional regulator 2485373 11044508 Acife_2488 Acidithiobacillus ferrivorans SS3 two component sigma-54 specific Fis family transcriptional regulator YP_004784908.1 2484003 D 743299 CDS YP_004784909.1 344200583 11043265 2486087..2486599 1 NC_015942.1 KEGG: mgm:Mmc1_3716 thiosulfate-binding protein SoxY; hypothetical protein 2486599 11043265 Acife_2490 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784909.1 2486087 D 743299 CDS YP_004784910.1 344200584 11044509 2486637..2486969 1 NC_015942.1 PFAM: Sulphur oxidation protein SoxZ; KEGG: aae:aq_1809 hypothetical protein; sulfur oxidation protein SoxZ 2486969 11044509 Acife_2491 Acidithiobacillus ferrivorans SS3 sulfur oxidation protein SoxZ YP_004784910.1 2486637 D 743299 CDS YP_004784911.1 344200585 11044510 2487346..2487879 1 NC_015942.1 PFAM: Protein of unknown function DUF302; KEGG: mgm:Mmc1_3713 hypothetical protein; hypothetical protein 2487879 11044510 Acife_2493 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784911.1 2487346 D 743299 CDS YP_004784912.1 344200586 11043267 2487898..2489625 1 NC_015942.1 PFAM: 5'-Nucleotidase, C-terminal; KEGG: slt:Slit_1696 5'-nucleotidase domain protein; 5'-nucleotidase domain-containing protein 2489625 11043267 Acife_2494 Acidithiobacillus ferrivorans SS3 5'-nucleotidase domain-containing protein YP_004784912.1 2487898 D 743299 CDS YP_004784913.1 344200587 11043268 2489905..2490948 1 NC_015942.1 KEGG: afr:AFE_2562 rod shape-determining protein MreB; TIGRFAM: Cell shape determining protein MreB/Mrl; PFAM: Cell shape determining protein MreB/Mrl; MreB/Mrl family cell shape determining protein 2490948 11043268 Acife_2495 Acidithiobacillus ferrivorans SS3 MreB/Mrl family cell shape determining protein YP_004784913.1 2489905 D 743299 CDS YP_004784914.1 344200588 11043269 2490973..2491812 1 NC_015942.1 KEGG: afr:AFE_2563 rod shape-determining protein MreC; TIGRFAM: Rod shape-determining protein MreC, subtype; PFAM: Rod shape-determining protein MreC; rod shape-determining protein MreC 2491812 11043269 Acife_2496 Acidithiobacillus ferrivorans SS3 rod shape-determining protein MreC YP_004784914.1 2490973 D 743299 CDS YP_004784915.1 344200589 11043270 2491809..2492285 1 NC_015942.1 TIGRFAM: Cell shape-determining protein MreD; KEGG: afr:AFE_2564 rod shape-determining protein MreD, putative; rod shape-determining protein MreD 2492285 11043270 Acife_2497 Acidithiobacillus ferrivorans SS3 rod shape-determining protein MreD YP_004784915.1 2491809 D 743299 CDS YP_004784916.1 344200590 11043271 2492282..2492566 1 NC_015942.1 KEGG: afr:AFE_2565 penicillin-binding protein 2; hypothetical protein 2492566 11043271 Acife_2498 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784916.1 2492282 D 743299 CDS YP_004784917.1 344200591 11044511 2492563..2493657 1 NC_015942.1 KEGG: afe:Lferr_2196 rod shape-determining protein RodA; TIGRFAM: Rod shape-determining protein RodA; PFAM: Cell cycle protein; rod shape-determining protein RodA 2493657 11044511 Acife_2499 Acidithiobacillus ferrivorans SS3 rod shape-determining protein RodA YP_004784917.1 2492563 D 743299 CDS YP_004784918.1 344200592 11043272 2493797..2494963 1 NC_015942.1 PFAM: Peptidase S11, D-alanyl-D-alanine carboxypeptidase A; Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal; KEGG: afr:AFE_2567 D-alanyl-D-alanine carboxypeptidase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 2494963 11043272 Acife_2500 Acidithiobacillus ferrivorans SS3 peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 YP_004784918.1 2493797 D 743299 CDS YP_004784919.1 344200593 11043273 2495067..2495396 1 NC_015942.1 PFAM: Protein of unknown function DUF493; KEGG: afe:Lferr_2198 hypothetical protein; hypothetical protein 2495396 11043273 Acife_2501 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784919.1 2495067 D 743299 CDS YP_004784920.1 344200594 11043274 2495393..2496031 1 NC_015942.1 TIGRFAM: Octanoyltransferase; HAMAP: Octanoyltransferase; KEGG: afr:AFE_2569 lipoate-protein ligase B; PFAM: Biotin/lipoate A/B protein ligase; Octanoyltransferase 2496031 11043274 Acife_2502 Acidithiobacillus ferrivorans SS3 Octanoyltransferase YP_004784920.1 2495393 D 743299 CDS YP_004784921.1 344200595 11043275 2496033..2496986 1 NC_015942.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Lipoate synthase; KEGG: afr:AFE_2570 lipoyl synthase; HAMAP: Lipoate synthase; PFAM: Radical SAM; lipoyl synthase 2496986 11043275 Acife_2503 Acidithiobacillus ferrivorans SS3 lipoyl synthase YP_004784921.1 2496033 D 743299 CDS YP_004784922.1 344200596 11043276 2497007..2497804 1 NC_015942.1 PFAM: Protein of unknown function DUF218; KEGG: afr:AFE_2571 hypothetical protein; hypothetical protein 2497804 11043276 Acife_2504 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784922.1 2497007 D 743299 CDS YP_004784923.1 344200597 11044512 complement(2497838..2498926) 1 NC_015942.1 PFAM: YkuD domain; KEGG: afe:Lferr_2202 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 2498926 11044512 Acife_2505 Acidithiobacillus ferrivorans SS3 ErfK/YbiS/YcfS/YnhG family protein YP_004784923.1 2497838 R 743299 CDS YP_004784924.1 344200598 11043277 2499040..2499471 1 NC_015942.1 KEGG: afr:AFE_2573 hypothetical protein; hypothetical protein 2499471 11043277 Acife_2506 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784924.1 2499040 D 743299 CDS YP_004784925.1 344200599 11043278 2499443..2499538 1 NC_015942.1 hypothetical protein 2499538 11043278 Acife_2507 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784925.1 2499443 D 743299 CDS YP_004784926.1 344200600 11043279 2499553..2501040 1 NC_015942.1 KEGG: afr:AFE_2574 hypothetical protein; hypothetical protein 2501040 11043279 Acife_2508 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784926.1 2499553 D 743299 CDS YP_004784927.1 344200601 11043280 2501050..2502213 1 NC_015942.1 KEGG: afr:AFE_2575 hypothetical protein; hypothetical protein 2502213 11043280 Acife_2509 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784927.1 2501050 D 743299 CDS YP_004784928.1 344200602 11044513 2502261..2502827 1 NC_015942.1 KEGG: afr:AFE_2576 small GTP-binding protein; TIGRFAM: Small GTP-binding protein; PFAM: Protein of unknown function, ATP binding; small GTP-binding protein 2502827 11044513 Acife_2510 Acidithiobacillus ferrivorans SS3 small GTP-binding protein YP_004784928.1 2502261 D 743299 CDS YP_004784929.1 344200603 11043281 2502824..2503462 1 NC_015942.1 KEGG: afr:AFE_2577 hypothetical protein; hypothetical protein 2503462 11043281 Acife_2511 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784929.1 2502824 D 743299 CDS YP_004784930.1 344200604 11043282 2503513..2503875 1 NC_015942.1 PFAM: Dynein light chain-related; KEGG: afr:AFE_2578 roadblock/LC7 domain protein; Roadblock/LC7 family protein 2503875 11043282 Acife_2512 Acidithiobacillus ferrivorans SS3 Roadblock/LC7 family protein YP_004784930.1 2503513 D 743299 CDS YP_004784931.1 344200605 11043283 2503965..2504849 1 NC_015942.1 TIGRFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Glycyl-tRNA synthetase, class IIc, alpha subunit; KEGG: afr:AFE_2580 glycyl-tRNA synthetase subunit alpha; PFAM: Glycyl-tRNA synthetase, class IIc, alpha subunit; glycyl-tRNA synthetase alpha subunit 2504849 11043283 Acife_2513 Acidithiobacillus ferrivorans SS3 glycyl-tRNA synthetase alpha subunit YP_004784931.1 2503965 D 743299 CDS YP_004784932.1 344200606 11044514 2504836..2506920 1 NC_015942.1 TIGRFAM: Glycyl-tRNA synthetase, class IIc, beta subunit; HAMAP: Glycyl-tRNA synthetase beta subunit; KEGG: afr:AFE_2581 glycyl-tRNA synthetase, beta subunit; PFAM: Glycyl-tRNA synthetase, class IIc, beta subunit, N-terminal; glycyl-tRNA synthetase beta subunit 2506920 11044514 Acife_2514 Acidithiobacillus ferrivorans SS3 glycyl-tRNA synthetase beta subunit YP_004784932.1 2504836 D 743299 CDS YP_004784933.1 344200607 11043284 2506920..2507459 1 NC_015942.1 KEGG: afr:AFE_2582 histidinol-phosphate phosphatase domain protein; TIGRFAM: Histidinol-phosphate phosphatase; HAD-superfamily hydrolase, subfamily IIIA; PFAM: Haloacid dehalogenase-like hydrolase; histidinol-phosphate phosphatase family protein 2507459 11043284 Acife_2515 Acidithiobacillus ferrivorans SS3 histidinol-phosphate phosphatase family protein YP_004784933.1 2506920 D 743299 CDS YP_004784934.1 344200608 11044515 2507456..2508184 1 NC_015942.1 KEGG: afr:AFE_2584 acyltransferase family protein; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2508184 11044515 Acife_2516 Acidithiobacillus ferrivorans SS3 phospholipid/glycerol acyltransferase YP_004784934.1 2507456 D 743299 CDS YP_004784935.1 344200609 11043285 complement(2508132..2509040) 1 NC_015942.1 KEGG: afr:AFE_2583 alpha-L-glutamate ligase, RimK family; TIGRFAM: S6 modification enzyme RimK; PFAM: ATP-grasp fold, RimK-type; RimK family alpha-L-glutamate ligase 2509040 11043285 Acife_2517 Acidithiobacillus ferrivorans SS3 RimK family alpha-L-glutamate ligase YP_004784935.1 2508132 R 743299 CDS YP_004784936.1 344200610 11043286 complement(2509044..2509364) 1 NC_015942.1 KEGG: afr:AFE_2585 hypothetical protein; hypothetical protein 2509364 11043286 Acife_2518 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784936.1 2509044 R 743299 CDS YP_004784937.1 344200611 11044516 2509563..2510909 1 NC_015942.1 PFAM: Cysteine-rich region, CCG; KEGG: afr:AFE_2554 heterodisulfide reductase subunit B, homolog; hypothetical protein 2510909 11044516 Acife_2519 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784937.1 2509563 D 743299 CDS YP_004784938.1 344200612 11043287 2511091..2511393 1 NC_015942.1 KEGG: afr:AFE_2587 hypothetical protein; hypothetical protein 2511393 11043287 Acife_2520 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784938.1 2511091 D 743299 CDS YP_004784939.1 344200613 11043288 complement(2511457..2511786) 1 NC_015942.1 KEGG: afr:AFE_1861 pterin-4-alpha-carbinolamine dehydratase; HAMAP: pterin-4-alpha-carbinolamine dehydratase; PFAM: Transcriptional coactivator/pterin dehydratase; pterin-4-alpha-carbinolamine dehydratase 2511786 11043288 Acife_2521 Acidithiobacillus ferrivorans SS3 pterin-4-alpha-carbinolamine dehydratase YP_004784939.1 2511457 R 743299 CDS YP_004784940.1 344200614 11044517 2511869..2512576 1 NC_015942.1 PFAM: Protein of unknown function DUF208; KEGG: afr:AFE_2588 hypothetical protein; hypothetical protein 2512576 11044517 Acife_2522 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784940.1 2511869 D 743299 CDS YP_004784941.1 344200615 11043289 complement(2512764..2513336) 1 NC_015942.1 KEGG: afr:AFE_2589 N-acetyl-anhydromuranmyl-L-alanine amidase; PFAM: N-acetylmuramoyl-L-alanine amidase, family 2; SMART: N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD 2513336 11043289 Acife_2523 Acidithiobacillus ferrivorans SS3 N-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD YP_004784941.1 2512764 R 743299 CDS YP_004784942.1 344200616 11043290 complement(2513333..2513719) 1 NC_015942.1 KEGG: afr:AFE_2590 thioredoxin, putative; thioredoxin 2513719 11043290 Acife_2524 Acidithiobacillus ferrivorans SS3 thioredoxin YP_004784942.1 2513333 R 743299 CDS YP_004784943.1 344200617 11043292 complement(2513981..2515522) 1 NC_015942.1 KEGG: afr:AFE_2596 2-isopropylmalate synthase; TIGRFAM: Bacterial 2-isopropylmalate synthase; PFAM: Pyruvate carboxyltransferase; 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain; 2-isopropylmalate synthase 2515522 11043292 Acife_2526 Acidithiobacillus ferrivorans SS3 2-isopropylmalate synthase YP_004784943.1 2513981 R 743299 CDS YP_004784944.1 344200618 11044518 complement(2515818..2516174) 1 NC_015942.1 KEGG: afr:AFE_2593 hypothetical protein; hypothetical protein 2516174 11044518 Acife_2528 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784944.1 2515818 R 743299 CDS YP_004784945.1 344200619 11043294 complement(2516302..2516835) 1 NC_015942.1 KEGG: afr:AFE_1745 hypothetical protein; hypothetical protein 2516835 11043294 Acife_2529 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784945.1 2516302 R 743299 CDS YP_004784946.1 344200620 11044520 complement(2518682..2519134) 1 NC_015942.1 KEGG: afr:AFE_2607 transcriptional regulator, MerR family; PFAM: HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; regulatory protein MerR 2519134 11044520 Acife_2532 Acidithiobacillus ferrivorans SS3 regulatory protein MerR YP_004784946.1 2518682 R 743299 CDS YP_004784947.1 344200621 11043297 complement(2519109..2519408) 1 NC_015942.1 SMART: Histone-like bacterial DNA-binding protein; TIGRFAM: Integration host factor, alpha subunit; KEGG: afr:AFE_2608 integration host factor, alpha subunit; HAMAP: Integration host factor, alpha subunit; PFAM: Histone-like bacterial DNA-binding protein; integration host factor subunit alpha 2519408 11043297 Acife_2533 Acidithiobacillus ferrivorans SS3 integration host factor subunit alpha YP_004784947.1 2519109 R 743299 CDS YP_004784948.1 344200622 11043298 complement(2519419..2521818) 1 NC_015942.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; HAMAP: Phenylalanyl-tRNA synthetase, class IIc, beta subunit, bacterial; KEGG: afr:AFE_2609 phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase beta chain 2521818 11043298 Acife_2534 Acidithiobacillus ferrivorans SS3 phenylalanyl-tRNA synthetase beta chain YP_004784948.1 2519419 R 743299 CDS YP_004784949.1 344200623 11043299 complement(2521828..2522850) 1 NC_015942.1 TIGRFAM: Phenylalanyl-tRNA synthetase, class IIc, alpha subunit; HAMAP: Phenylalanyl-tRNA synthetase alpha chain; KEGG: afr:AFE_2610 phenylalanyl-tRNA synthetase subunit alpha; PFAM: Phenylalanyl-tRNA synthetase alpha chain; Phenylalanyl-tRNA synthetase, class II, N-terminal; phenylalanyl-tRNA synthetase alpha chain 2522850 11043299 Acife_2535 Acidithiobacillus ferrivorans SS3 phenylalanyl-tRNA synthetase alpha chain YP_004784949.1 2521828 R 743299 CDS YP_004784950.1 344200624 11043300 complement(2522871..2523230) 1 NC_015942.1 TIGRFAM: Ribosomal protein L20; HAMAP: Ribosomal protein L20; KEGG: afr:AFE_2611 50S ribosomal protein L20; PFAM: Ribosomal protein L20; 50S ribosomal protein L20 2523230 11043300 Acife_2536 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L20 YP_004784950.1 2522871 R 743299 CDS YP_004784951.1 344200625 11043301 complement(2523249..2523446) 1 NC_015942.1 TIGRFAM: Ribosomal protein L35; HAMAP: Ribosomal protein L35; KEGG: afr:AFE_2612 50S ribosomal protein L35; PFAM: Ribosomal protein L35; 50S ribosomal protein L35 2523446 11043301 Acife_2537 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L35 YP_004784951.1 2523249 R 743299 CDS YP_004784952.1 344200626 11043302 complement(2523456..2523956) 1 NC_015942.1 TIGRFAM: Translation initiation factor 3; HAMAP: Translation initiation factor IF-3; KEGG: afr:AFE_2613 translation initiation factor IF-3; PFAM: Translation initiation factor 3, C-terminal; Translation initiation factor 3, N-terminal; translation initiation factor IF-3 2523956 11043302 Acife_2538 Acidithiobacillus ferrivorans SS3 translation initiation factor IF-3 YP_004784952.1 2523456 R 743299 CDS YP_004784953.1 344200627 11043303 complement(2523991..2525925) 1 NC_015942.1 KEGG: afr:AFE_2614 threonyl-tRNA synthetase; TIGRFAM: Threonyl-tRNA synthetase, class IIa; PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Threonyl/alanyl tRNA synthetase, SAD; TGS; Anticodon-binding; threonyl-tRNA synthetase 2525925 11043303 Acife_2539 Acidithiobacillus ferrivorans SS3 threonyl-tRNA synthetase YP_004784953.1 2523991 R 743299 CDS YP_004784954.1 344200628 11044521 complement(2526088..2526402) 1 NC_015942.1 KEGG: afr:AFE_3120 hypothetical protein; hypothetical protein 2526402 11044521 Acife_2540 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784954.1 2526088 R 743299 CDS YP_004784955.1 344200629 11043305 complement(2526402..2527847) 1 NC_015942.1 TIGRFAM: NADH-quinone oxidoreductase, chain N; HAMAP: NAD(P)H-quinone oxidoreductase subunit 2; KEGG: afr:AFE_2617 NADH-quinone oxidoreductase, N subunit; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NAD(P)H-quinone oxidoreductase subunit 2 2527847 11043305 Acife_2541 Acidithiobacillus ferrivorans SS3 NAD(P)H-quinone oxidoreductase subunit 2 YP_004784955.1 2526402 R 743299 CDS YP_004784956.1 344200630 11043306 complement(2527860..2529344) 1 NC_015942.1 KEGG: afr:AFE_2618 NADH-quinone oxidoreductase, M subunit; TIGRFAM: NADH-quinone oxidoreductase, chain M; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; proton-translocating NADH-quinone oxidoreductase subunit M 2529344 11043306 Acife_2542 Acidithiobacillus ferrivorans SS3 proton-translocating NADH-quinone oxidoreductase subunit M YP_004784956.1 2527860 R 743299 CDS YP_004784957.1 344200631 11044522 complement(2529347..2531329) 1 NC_015942.1 KEGG: afe:Lferr_2246 proton-translocating NADH-quinone oxidoreductase subunit L; TIGRFAM: NADH-plastoquinone oxidoreductase, chain 5; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; proton-translocating NADH-quinone oxidoreductase subunit L 2531329 11044522 Acife_2543 Acidithiobacillus ferrivorans SS3 proton-translocating NADH-quinone oxidoreductase subunit L YP_004784957.1 2529347 R 743299 CDS YP_004784958.1 344200632 11043307 complement(2531331..2531648) 1 NC_015942.1 KEGG: afr:AFE_2620 NADH-quinone oxidoreductase, K subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit 4L; PFAM: NADH:ubiquinone/quinone oxidoreductase, chain 4L; NAD(P)H-quinone oxidoreductase subunit 4L 2531648 11043307 Acife_2544 Acidithiobacillus ferrivorans SS3 NAD(P)H-quinone oxidoreductase subunit 4L YP_004784958.1 2531331 R 743299 CDS YP_004784959.1 344200633 11043308 complement(2531645..2532244) 1 NC_015942.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 6; KEGG: afr:AFE_2621 NADH-quinone oxidoreductase, J subunit; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 2532244 11043308 Acife_2545 Acidithiobacillus ferrivorans SS3 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 YP_004784959.1 2531645 R 743299 CDS YP_004784960.1 344200634 11043309 complement(2532260..2532751) 1 NC_015942.1 TIGRFAM: NADH-quinone oxidoreductase, chain I; HAMAP: NADH-quinone oxidoreductase, chain I; KEGG: afr:AFE_2622 NADH dehydrogenase subunit I; PFAM: 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; NAD(P)H-quinone oxidoreductase subunit I 2532751 11043309 Acife_2546 Acidithiobacillus ferrivorans SS3 NAD(P)H-quinone oxidoreductase subunit I YP_004784960.1 2532260 R 743299 CDS YP_004784961.1 344200635 11043310 complement(2532762..2533787) 1 NC_015942.1 KEGG: afr:AFE_2623 NADH-quinone oxidoreductase, H subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit 1; PFAM: NADH:ubiquinone oxidoreductase, subunit 1; NAD(P)H-quinone oxidoreductase subunit 1 2533787 11043310 Acife_2547 Acidithiobacillus ferrivorans SS3 NAD(P)H-quinone oxidoreductase subunit 1 YP_004784961.1 2532762 R 743299 CDS YP_004784962.1 344200636 11044523 complement(2533799..2536144) 1 NC_015942.1 KEGG: afr:AFE_2624 NADH-quinone oxidoreductase, G subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, subunit G; PFAM: Molybdopterin oxidoreductase; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; Ferredoxin; Molybdopterin oxidoreductase Fe4S4 region; Molydopterin dinucleotide-binding region; NADH-quinone oxidoreductase subunit G 2536144 11044523 Acife_2548 Acidithiobacillus ferrivorans SS3 NADH-quinone oxidoreductase subunit G YP_004784962.1 2533799 R 743299 CDS YP_004784963.1 344200637 11043311 complement(2536144..2537427) 1 NC_015942.1 KEGG: afr:AFE_2625 NADH-quinone oxidoreductase, F subunit; TIGRFAM: NADH ubiquinone oxidoreductase, F subunit; PFAM: NADH:ubiquinone oxidoreductase, 51kDa subunit; Soluble ligand binding domain; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; NADH-quinone oxidoreductase subunit F 2537427 11043311 Acife_2549 Acidithiobacillus ferrivorans SS3 NADH-quinone oxidoreductase subunit F YP_004784963.1 2536144 R 743299 CDS YP_004784964.1 344200638 11043312 complement(2537417..2537908) 1 NC_015942.1 KEGG: afr:AFE_2626 NADH-quinone oxidoreductase, E subunit; TIGRFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; PFAM: NADH:ubiquinone oxidoreductase, 24kDa subunit; NADH-quinone oxidoreductase subunit E 2537908 11043312 Acife_2550 Acidithiobacillus ferrivorans SS3 NADH-quinone oxidoreductase subunit E YP_004784964.1 2537417 R 743299 CDS YP_004784965.1 344200639 11043313 complement(2537912..2539165) 1 NC_015942.1 TIGRFAM: NADH dehydrogenase I, D subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit H; KEGG: afr:AFE_2627 NADH dehydrogenase subunit D; PFAM: NADH-quinone oxidoreductase, subunit D; NAD(P)H-quinone oxidoreductase subunit H 2539165 11043313 Acife_2551 Acidithiobacillus ferrivorans SS3 NAD(P)H-quinone oxidoreductase subunit H YP_004784965.1 2537912 R 743299 CDS YP_004784966.1 344200640 11044524 complement(2539149..2539757) 1 NC_015942.1 TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; HAMAP: NAD(P)H-quinone oxidoreductase subunit J; KEGG: afr:AFE_2628 NADH-quinone oxidoreductase, C subunit; PFAM: NADH:ubiquinone oxidoreductase, 30kDa subunit; NAD(P)H-quinone oxidoreductase subunit J 2539757 11044524 Acife_2552 Acidithiobacillus ferrivorans SS3 NAD(P)H-quinone oxidoreductase subunit J YP_004784966.1 2539149 R 743299 CDS YP_004784967.1 344200641 11043314 complement(2539761..2540237) 1 NC_015942.1 TIGRFAM: NADH:ubiquinone oxidoreductase, 20kDa subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit K; KEGG: afr:AFE_2629 NADH dehydrogenase subunit B; PFAM: NADH:ubiquinone oxidoreductase-like, 20kDa subunit; NAD(P)H-quinone oxidoreductase subunit K 2540237 11043314 Acife_2553 Acidithiobacillus ferrivorans SS3 NAD(P)H-quinone oxidoreductase subunit K YP_004784967.1 2539761 R 743299 CDS YP_004784968.1 344200642 11044525 complement(2540228..2540584) 1 NC_015942.1 KEGG: afr:AFE_2630 NADH-quinone oxidoreductase, A subunit; HAMAP: NAD(P)H-quinone oxidoreductase subunit 3; PFAM: NADH:ubiquinone/plastoquinone oxidoreductase, chain 3; NAD(P)H-quinone oxidoreductase subunit 3 2540584 11044525 Acife_2554 Acidithiobacillus ferrivorans SS3 NAD(P)H-quinone oxidoreductase subunit 3 YP_004784968.1 2540228 R 743299 CDS YP_004784969.1 344200643 11043316 complement(2540837..2541229) 1 NC_015942.1 KEGG: afr:AFE_2632 preprotein translocase, SecG subunit; TIGRFAM: Preprotein translocase SecG subunit; PFAM: Preprotein translocase SecG subunit; preprotein translocase subunit SecG 2541229 11043316 Acife_2555 Acidithiobacillus ferrivorans SS3 preprotein translocase subunit SecG YP_004784969.1 2540837 R 743299 CDS YP_004784970.1 344200644 11044526 complement(2541234..2542007) 1 NC_015942.1 KEGG: afr:AFE_2633 triosephosphate isomerase; TIGRFAM: Triosephosphate isomerase; PFAM: Triosephosphate isomerase; triosephosphate isomerase 2542007 11044526 Acife_2556 Acidithiobacillus ferrivorans SS3 triosephosphate isomerase YP_004784970.1 2541234 R 743299 CDS YP_004784971.1 344200645 11043317 complement(2542123..2543487) 1 NC_015942.1 KEGG: afr:AFE_2634 phosphoglucosamine mutase; TIGRFAM: Phosphoglucosamine mutase; PFAM: Alpha-D-phosphohexomutase, alpha/beta/alpha domain I; Alpha-D-phosphohexomutase, alpha/beta/alpha domain II; Alpha-D-phosphohexomutase, alpha/beta/alpha domain III; Alpha-D-phosphohexomutase, C-terminal; phosphoglucosamine mutase 2543487 11043317 Acife_2557 Acidithiobacillus ferrivorans SS3 phosphoglucosamine mutase YP_004784971.1 2542123 R 743299 CDS YP_004784972.1 344200646 11043318 complement(2543571..2544410) 1 NC_015942.1 KEGG: afr:AFE_2635 dihydropteroate synthase; TIGRFAM: Dihydropteroate synthase; PFAM: Dihydropteroate synthase, DHPS; dihydropteroate synthase 2544410 11043318 Acife_2558 Acidithiobacillus ferrivorans SS3 dihydropteroate synthase YP_004784972.1 2543571 R 743299 CDS YP_004784973.1 344200647 11044527 complement(2544407..2546329) 1 NC_015942.1 TIGRFAM: Peptidase M41, FtsH; PFAM: Peptidase M41; ATPase, AAA-type, core; Peptidase M41, FtsH extracellular; KEGG: afr:AFE_2636 cell division protein FtsH; SMART: ATPase, AAA+ type, core; ATP-dependent metalloprotease FtsH 2546329 11044527 Acife_2559 Acidithiobacillus ferrivorans SS3 ATP-dependent metalloprotease FtsH YP_004784973.1 2544407 R 743299 CDS YP_004784974.1 344200648 11043319 complement(2546427..2547872) 1 NC_015942.1 PFAM: Peptidase U62, modulator of DNA gyrase; KEGG: afr:AFE_2637 TldD protein; peptidase U62 modulator of DNA gyrase 2547872 11043319 Acife_2560 Acidithiobacillus ferrivorans SS3 peptidase U62 modulator of DNA gyrase YP_004784974.1 2546427 R 743299 CDS YP_004784975.1 344200649 11044528 2548214..2551066 1 NC_015942.1 KEGG: afr:AFE_2638 ribonucleotide-diphosphate reductase, alpha subunit; TIGRFAM: Ribonucleoside-diphosphate reductase, alpha subunit; PFAM: Ribonucleotide reductase large subunit, C-terminal; Ribonucleotide reductase large subunit, N-terminal; ATP-cone; ribonucleoside-diphosphate reductase subunit alpha 2551066 11044528 Acife_2561 Acidithiobacillus ferrivorans SS3 ribonucleoside-diphosphate reductase subunit alpha YP_004784975.1 2548214 D 743299 CDS YP_004784976.1 344200650 11043320 2551097..2552221 1 NC_015942.1 PFAM: Ribonucleotide reductase; KEGG: afr:AFE_2639 ribonucleotide-diphosphate reductase subunit beta; ribonucleotide reductase 2552221 11043320 Acife_2562 Acidithiobacillus ferrivorans SS3 ribonucleotide reductase YP_004784976.1 2551097 D 743299 CDS YP_004784977.1 344200651 11043321 2552720..2553577 1 NC_015942.1 KEGG: sbm:Shew185_4002 hypothetical protein; hypothetical protein 2553577 11043321 Acife_2563 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784977.1 2552720 D 743299 CDS YP_004784978.1 344200652 11043322 complement(2553652..2554440) 1 NC_015942.1 KEGG: nhl:Nhal_4020 hypothetical protein; hypothetical protein 2554440 11043322 Acife_2564 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784978.1 2553652 R 743299 CDS YP_004784979.1 344200653 11043323 2554824..2555333 1 NC_015942.1 KEGG: bac:BamMC406_6734 hypothetical protein; hypothetical protein 2555333 11043323 Acife_2565 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784979.1 2554824 D 743299 CDS YP_004784980.1 344200654 11043324 2555448..2556416 1 NC_015942.1 hypothetical protein 2556416 11043324 Acife_2566 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784980.1 2555448 D 743299 CDS YP_004784981.1 344200655 11043325 2556577..2557152 1 NC_015942.1 KEGG: kpe:KPK_A0235 hypothetical protein; hypothetical protein 2557152 11043325 Acife_2567 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784981.1 2556577 D 743299 CDS YP_004784982.1 344200656 11043326 2557263..2557535 1 NC_015942.1 hypothetical protein 2557535 11043326 Acife_2568 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784982.1 2557263 D 743299 CDS YP_004784983.1 344200657 11043327 2558150..2561737 1 NC_015942.1 KEGG: cak:Caul_5232 hypothetical protein; hypothetical protein 2561737 11043327 Acife_2569 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784983.1 2558150 D 743299 CDS YP_004784984.1 344200658 11044529 complement(2562477..2563319) 1 NC_015942.1 KEGG: afr:AFE_3189 hypothetical protein; hypothetical protein 2563319 11044529 Acife_2570 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784984.1 2562477 R 743299 CDS YP_004784985.1 344200659 11044530 complement(2563617..2563805) 1 NC_015942.1 hypothetical protein 2563805 11044530 Acife_2571 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784985.1 2563617 R 743299 CDS YP_004784986.1 344200660 11043328 complement(2563944..2564981) 1 NC_015942.1 KEGG: psa:PST_0584 hypothetical protein; hypothetical protein 2564981 11043328 Acife_2572 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784986.1 2563944 R 743299 CDS YP_004784987.1 344200661 11043329 2565194..2565472 1 NC_015942.1 hypothetical protein 2565472 11043329 Acife_2573 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784987.1 2565194 D 743299 CDS YP_004784988.1 344200662 11043330 2565588..2566319 1 NC_015942.1 KEGG: bgf:BC1003_0016 hypothetical protein; hypothetical protein 2566319 11043330 Acife_2574 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784988.1 2565588 D 743299 CDS YP_004784989.1 344200663 11043331 2566316..2568352 1 NC_015942.1 PFAM: Integrase, catalytic core; KEGG: mms:mma_0807 hypothetical protein; integrase catalytic subunit 2568352 11043331 Acife_2575 Acidithiobacillus ferrivorans SS3 integrase catalytic subunit YP_004784989.1 2566316 D 743299 CDS YP_004784990.1 344200664 11044531 2568630..2569592 1 NC_015942.1 SMART: ATPase, AAA+ type, core; KEGG: mms:mma_0806 hypothetical protein; AAA ATPase 2569592 11044531 Acife_2576 Acidithiobacillus ferrivorans SS3 AAA ATPase YP_004784990.1 2568630 D 743299 CDS YP_004784991.1 344200665 11043332 2569792..2571753 1 NC_015942.1 KEGG: rpf:Rpic12D_4722 hypothetical protein; hypothetical protein 2571753 11043332 Acife_2577 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784991.1 2569792 D 743299 CDS YP_004784992.1 344200666 11043333 2571803..2572078 1 NC_015942.1 hypothetical protein 2572078 11043333 Acife_2578 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784992.1 2571803 D 743299 CDS YP_004784993.1 344200667 11043334 2572148..2572438 1 NC_015942.1 PFAM: Nucleotidyltransferase; KEGG: gpb:HDN1F_30740 DNA polymerase, beta-like region; DNA polymerase beta domain-containing protein 2572438 11043334 Acife_2579 Acidithiobacillus ferrivorans SS3 DNA polymerase beta domain-containing protein YP_004784993.1 2572148 D 743299 CDS YP_004784994.1 344200668 11043335 2572435..2572803 1 NC_015942.1 PFAM: Protein of unknown function DUF86; KEGG: avn:Avin_50240 hypothetical protein; hypothetical protein 2572803 11043335 Acife_2580 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784994.1 2572435 D 743299 CDS YP_004784995.1 344200669 11043336 2573150..2573338 1 NC_015942.1 KEGG: xop:PXO_04731 transposase TnpA, ISL3 family; transposase TnpA, ISL3 family 2573338 11043336 Acife_2582 Acidithiobacillus ferrivorans SS3 transposase TnpA, ISL3 family YP_004784995.1 2573150 D 743299 CDS YP_004784996.1 344200670 11043337 complement(2573628..2573900) 1 NC_015942.1 hypothetical protein 2573900 11043337 Acife_2583 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784996.1 2573628 R 743299 CDS YP_004784997.1 344200671 11043338 complement(2574345..2575256) 1 NC_015942.1 PFAM: Protein of unknown function DUF6, transmembrane; KEGG: hna:Hneap_1754 protein of unknown function DUF6 transmembrane; hypothetical protein 2575256 11043338 Acife_2584 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004784997.1 2574345 R 743299 CDS YP_004784998.1 344200672 11044533 2575763..2576416 1 NC_015942.1 PFAM: Class II aldolase/adducin, N-terminal; KEGG: bts:Btus_2794 class II aldolase/adducin family protein; class II aldolase/adducin family protein 2576416 11044533 Acife_2585 Acidithiobacillus ferrivorans SS3 class II aldolase/adducin family protein YP_004784998.1 2575763 D 743299 CDS YP_004784999.1 344200673 11043339 2576413..2576790 1 NC_015942.1 PFAM: Transcriptional regulator PadR N-terminal-like; KEGG: bts:Btus_2793 transcriptional regulator, PadR-like family; PadR-like family transcriptional regulator 2576790 11043339 Acife_2586 Acidithiobacillus ferrivorans SS3 PadR-like family transcriptional regulator YP_004784999.1 2576413 D 743299 CDS YP_004785000.1 344200674 11043340 2576783..2577193 1 NC_015942.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: afo:Afer_1875 carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 2577193 11043340 Acife_2587 Acidithiobacillus ferrivorans SS3 carboxymuconolactone decarboxylase YP_004785000.1 2576783 D 743299 CDS YP_004785001.1 344200675 11043341 2577177..2577350 1 NC_015942.1 hypothetical protein 2577350 11043341 Acife_2588 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785001.1 2577177 D 743299 CDS YP_004785002.1 344200676 11043342 complement(2577381..2577905) 1 NC_015942.1 SMART: Rhodanese-like; KEGG: lch:Lcho_1075 rhodanese domain-containing protein; rhodanese-like protein 2577905 11043342 Acife_2589 Acidithiobacillus ferrivorans SS3 rhodanese-like protein YP_004785002.1 2577381 R 743299 CDS YP_004785003.1 344200677 11044534 complement(2578037..2578189) 1 NC_015942.1 hypothetical protein 2578189 11044534 Acife_2590 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785003.1 2578037 R 743299 CDS YP_004785004.1 344200678 11044536 complement(2580017..2580652) 1 NC_015942.1 PFAM: Cytochrome c oxidase, subunit III; KEGG: afr:AFE_0633 cytochrome o ubiquinol oxidase, subunit III; cytochrome c oxidase subunit III 2580652 11044536 Acife_2595 Acidithiobacillus ferrivorans SS3 cytochrome c oxidase subunit III YP_004785004.1 2580017 R 743299 CDS YP_004785005.1 344200679 11043346 complement(2580725..2582860) 1 NC_015942.1 PFAM: Cytochrome c oxidase, subunit I; KEGG: afe:Lferr_0782 cytochrome-c oxidase; cytochrome c oxidase subunit I 2582860 11043346 Acife_2596 Acidithiobacillus ferrivorans SS3 cytochrome c oxidase subunit I YP_004785005.1 2580725 R 743299 CDS YP_004785006.1 344200680 11043347 complement(2582883..2583854) 1 NC_015942.1 PFAM: Cytochrome c oxidase subunit II C-terminal; COX aromatic rich; KEGG: afr:AFE_0631 cytochrome o ubiquinol oxidase, subunit II; cytochrome c oxidase subunit II 2583854 11043347 Acife_2597 Acidithiobacillus ferrivorans SS3 cytochrome c oxidase subunit II YP_004785006.1 2582883 R 743299 CDS YP_004785007.1 344200681 11043349 complement(2584198..2585058) 1 NC_015942.1 PFAM: Protein of unknown function DUF1641; hypothetical protein 2585058 11043349 Acife_2599 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785007.1 2584198 R 743299 CDS YP_004785008.1 344200682 11044537 complement(2585118..2586425) 1 NC_015942.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tin:Tint_1281 FAD-dependent pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2586425 11044537 Acife_2600 Acidithiobacillus ferrivorans SS3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004785008.1 2585118 R 743299 CDS YP_004785009.1 344200683 11043350 complement(2586577..2587512) 1 NC_015942.1 PFAM: Sulphur oxygenase reductase; KEGG: hna:Hneap_1222 sulfur oxygenase/reductase; sulfur oxygenase reductase 2587512 11043350 Acife_2601 Acidithiobacillus ferrivorans SS3 sulfur oxygenase reductase YP_004785009.1 2586577 R 743299 CDS YP_004785010.1 344200684 11044538 2587888..2589237 1 NC_015942.1 KEGG: sto:ST2470 hypothetical protein; PFAM: Pyrrolo-quinoline quinone repeat; SMART: Pyrrolo-quinoline quinone beta-propeller repeat; pyrrolo-quinoline quinone repeat-containing protein 2589237 11044538 Acife_2602 Acidithiobacillus ferrivorans SS3 pyrrolo-quinoline quinone repeat-containing protein YP_004785010.1 2587888 D 743299 CDS YP_004785011.1 344200685 11043351 2589431..2590243 1 NC_015942.1 KEGG: afr:AFE_0042 Tat (twin-arginine translocation) pathway signal sequence domain protein; Tat (twin-arginine translocation) pathway signal sequence domain-containing protein 2590243 11043351 Acife_2603 Acidithiobacillus ferrivorans SS3 Tat (twin-arginine translocation) pathway signal sequence domain-containing protein YP_004785011.1 2589431 D 743299 CDS YP_004785012.1 344200686 11043352 2590751..2592559 1 NC_015942.1 PFAM: Cation/H+ exchanger; Regulator of K+ conductance, N-terminal; KEGG: pen:PSEEN4255 sodium/hydrogen exchanger family protein; sodium/hydrogen exchanger 2592559 11043352 Acife_2604 Acidithiobacillus ferrivorans SS3 sodium/hydrogen exchanger YP_004785012.1 2590751 D 743299 CDS YP_004785013.1 344200687 11043354 complement(2593783..2594304) 1 NC_015942.1 KEGG: alv:Alvin_3239 hypothetical protein; hypothetical protein 2594304 11043354 Acife_2607 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785013.1 2593783 R 743299 CDS YP_004785014.1 344200688 11043355 complement(2594620..2594904) 1 NC_015942.1 KEGG: afr:AFE_1070 DNA-binding protein, HU family; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 2594904 11043355 Acife_2608 Acidithiobacillus ferrivorans SS3 histone family protein DNA-binding protein YP_004785014.1 2594620 R 743299 CDS YP_004785015.1 344200689 11043356 2595023..2595310 1 NC_015942.1 KEGG: afe:Lferr_0253 hypothetical protein; manually curated; PFAM: Protein of unknown function DUF167; hypothetical protein 2595310 11043356 Acife_2609 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785015.1 2595023 D 743299 CDS YP_004785016.1 344200690 11043357 2595417..2595680 1 NC_015942.1 KEGG: afr:AFE_1865 hypothetical protein; hypothetical protein 2595680 11043357 Acife_2610 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785016.1 2595417 D 743299 CDS YP_004785017.1 344200691 11043358 2595643..2595804 1 NC_015942.1 hypothetical protein 2595804 11043358 Acife_2611 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785017.1 2595643 D 743299 CDS YP_004785018.1 344200692 11043359 2595888..2596079 1 NC_015942.1 hypothetical protein 2596079 11043359 Acife_2612 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785018.1 2595888 D 743299 CDS YP_004785019.1 344200693 11044539 2596076..2596336 1 NC_015942.1 KEGG: afr:AFE_1198 hypothetical protein; hypothetical protein 2596336 11044539 Acife_2613 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785019.1 2596076 D 743299 CDS YP_004785020.1 344200694 11044540 2596330..2597046 1 NC_015942.1 PFAM: YkuD domain; KEGG: afr:AFE_2089 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein 2597046 11044540 Acife_2614 Acidithiobacillus ferrivorans SS3 ErfK/YbiS/YcfS/YnhG family protein YP_004785020.1 2596330 D 743299 CDS YP_004785021.1 344200695 11043360 2597365..2598738 1 NC_015942.1 KEGG: syn:sll1641 glutamate decarboxylase; TIGRFAM: Glutamate decarboxylase; PFAM: Pyridoxal phosphate-dependent decarboxylase; glutamate decarboxylase 2598738 11043360 Acife_2615 Acidithiobacillus ferrivorans SS3 glutamate decarboxylase YP_004785021.1 2597365 D 743299 CDS YP_004785022.1 344200696 11043361 2599136..2600566 1 NC_015942.1 PFAM: Phospholipase D/Transphosphatidylase; KEGG: mxa:MXAN_0537 putative cardiolipin synthase; phospholipase D/transphosphatidylase 2600566 11043361 Acife_2616 Acidithiobacillus ferrivorans SS3 phospholipase D/transphosphatidylase YP_004785022.1 2599136 D 743299 CDS YP_004785023.1 344200697 11043362 join(2600707..2601219,2601221..2601757) 1 NC_015942.1 manually curated; KEGG: eba:ebA3243 IS5 family transposase; hypothetical protein 2601757 11043362 Acife_2617 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785023.1 2600707 D 743299 CDS YP_004785024.1 344200698 11043364 2602287..2602685 1 NC_015942.1 PFAM: Transposase (putative), IS66 Orf2 like; KEGG: eba:ebB23 transpoase helper protein; IS66 Orf2 family protein 2602685 11043364 Acife_2619 Acidithiobacillus ferrivorans SS3 IS66 Orf2 family protein YP_004785024.1 2602287 D 743299 CDS YP_004785025.1 344200699 11043365 2602675..2604267 1 NC_015942.1 PFAM: Transposase, IS66; KEGG: eba:ebA859 transposase; transposase IS66 2604267 11043365 Acife_2620 Acidithiobacillus ferrivorans SS3 transposase IS66 YP_004785025.1 2602675 D 743299 CDS YP_004785026.1 344200700 11043366 complement(2604519..2605559) 1 NC_015942.1 PFAM: Transposase, IS116/IS110/IS902; KEGG: vei:Veis_4532 transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 2605559 11043366 Acife_2621 Acidithiobacillus ferrivorans SS3 transposase IS116/IS110/IS902 family protein YP_004785026.1 2604519 R 743299 CDS YP_004785027.1 344200701 11043367 complement(2606213..2608423) 1 NC_015942.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; DoxX; KEGG: afr:AFE_0098 DoxD family protein/pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2608423 11043367 Acife_2622 Acidithiobacillus ferrivorans SS3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004785027.1 2606213 R 743299 CDS YP_004785028.1 344200702 11044541 2609532..2609915 1 NC_015942.1 hypothetical protein 2609915 11044541 Acife_2624 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785028.1 2609532 D 743299 CDS YP_004785029.1 344200703 11043369 2609985..2611751 1 NC_015942.1 PFAM: Flavodoxin/nitric oxide synthase; FAD-binding, type 1; Oxidoreductase FAD/NAD(P)-binding; KEGG: afr:AFE_3121 sulfite reductase (NADPH) flavoprotein, alpha component; flavodoxin/nitric oxide synthase 2611751 11043369 Acife_2625 Acidithiobacillus ferrivorans SS3 flavodoxin/nitric oxide synthase YP_004785029.1 2609985 D 743299 CDS YP_004785030.1 344200704 11044542 2611741..2613432 1 NC_015942.1 TIGRFAM: Sulphite reductase (NADPH) hemoprotein, beta subunit; HAMAP: Sulfite reductase [NADPH] hemoprotein beta-component; KEGG: afr:AFE_3122 sulfite reductase (NADPH) hemoprotein beta-component; PFAM: Nitrite/sulphite reductase 4Fe-4S region; Nitrite/sulphite reductase, hemoprotein beta-component, ferrodoxin-like; sulfite reductase (NADPH) hemoprotein beta-component 2613432 11044542 Acife_2626 Acidithiobacillus ferrivorans SS3 sulfite reductase (NADPH) hemoprotein beta-component YP_004785030.1 2611741 D 743299 CDS YP_004785031.1 344200705 11043370 2613429..2614169 1 NC_015942.1 KEGG: afr:AFE_3123 adenylylsulfate reductase, thioredoxin dependent; TIGRFAM: Adenylylsulphate reductase, thioredoxin dependent; Phosphoadenosine phosphosulphate reductase CysH-type; PFAM: Phosphoadenosine phosphosulphate reductase; adenylylsulfate reductase, thioredoxin dependent 2614169 11043370 Acife_2627 Acidithiobacillus ferrivorans SS3 adenylylsulfate reductase, thioredoxin dependent YP_004785031.1 2613429 D 743299 CDS YP_004785032.1 344200706 11043371 2614166..2615104 1 NC_015942.1 KEGG: afr:AFE_3124 sulfate adenylyltransferase subunit 2; TIGRFAM: Sulphate adenylyltransferase, small subunit; PFAM: Phosphoadenosine phosphosulphate reductase; sulfate adenylyltransferase small subunit 2615104 11043371 Acife_2628 Acidithiobacillus ferrivorans SS3 sulfate adenylyltransferase small subunit YP_004785032.1 2614166 D 743299 CDS YP_004785033.1 344200707 11043372 2615104..2616456 1 NC_015942.1 KEGG: afr:AFE_3125 sulfate adenylyltransferase, large subunit; TIGRFAM: Sulphate adenylyltransferase, large subunit; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; sulfate adenylyltransferase large subunit 2616456 11043372 Acife_2629 Acidithiobacillus ferrivorans SS3 sulfate adenylyltransferase large subunit YP_004785033.1 2615104 D 743299 CDS YP_004785034.1 344200708 11043373 2616547..2617368 1 NC_015942.1 KEGG: afr:AFE_3126 uroporphyrin-III C-methyltransferase; TIGRFAM: Uroporphyrin-III C-methyltransferase, C-terminal; PFAM: Tetrapyrrole methylase; uroporphyrin-III C-methyltransferase 2617368 11043373 Acife_2630 Acidithiobacillus ferrivorans SS3 uroporphyrin-III C-methyltransferase YP_004785034.1 2616547 D 743299 CDS YP_004785035.1 344200709 11044543 2617621..2618064 1 NC_015942.1 KEGG: afr:AFE_3128 hypothetical protein; hypothetical protein 2618064 11044543 Acife_2631 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785035.1 2617621 D 743299 CDS YP_004785036.1 344200710 11044544 2618233..2618466 1 NC_015942.1 PFAM: SirA-like; KEGG: afr:AFE_3117 hypothetical protein; SirA-like domain-containing protein 2618466 11044544 Acife_2632 Acidithiobacillus ferrivorans SS3 SirA-like domain-containing protein YP_004785036.1 2618233 D 743299 CDS YP_004785037.1 344200711 11043374 2618491..2619630 1 NC_015942.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: afr:AFE_3118 pyridine nucleotide-disulfide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2619630 11043374 Acife_2633 Acidithiobacillus ferrivorans SS3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004785037.1 2618491 D 743299 CDS YP_004785038.1 344200712 11043375 2619645..2620106 1 NC_015942.1 KEGG: afe:Lferr_2717 hypothetical protein; hypothetical protein 2620106 11043375 Acife_2634 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785038.1 2619645 D 743299 CDS YP_004785039.1 344200713 11043376 2620257..2621498 1 NC_015942.1 KEGG: afr:AFE_0407 aspartate kinase, monofunctional class; TIGRFAM: Aspartate kinase region; Aspartate kinase, monofunctional class; PFAM: Aspartate/glutamate/uridylate kinase; Amino acid-binding ACT; aspartate kinase 2621498 11043376 Acife_2635 Acidithiobacillus ferrivorans SS3 aspartate kinase YP_004785039.1 2620257 D 743299 CDS YP_004785040.1 344200714 11044545 2621498..2622664 1 NC_015942.1 TIGRFAM: Acetylornithine/succinylornithine aminotransferase; HAMAP: Acetylornithine/succinyldiaminopimelate aminotransferase; KEGG: afr:AFE_0406 acetylornithine aminotransferase; PFAM: Aminotransferase class-III; acetylornithine/succinyldiaminopimelate aminotransferase 2622664 11044545 Acife_2636 Acidithiobacillus ferrivorans SS3 acetylornithine/succinyldiaminopimelate aminotransferase YP_004785040.1 2621498 D 743299 CDS YP_004785041.1 344200715 11043377 2622661..2623596 1 NC_015942.1 TIGRFAM: Ornithine carbamoyltransferase; HAMAP: Ornithine carbamoyltransferase; KEGG: afr:AFE_0405 ornithine carbamoyltransferase; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; ornithine carbamoyltransferase 2623596 11043377 Acife_2637 Acidithiobacillus ferrivorans SS3 ornithine carbamoyltransferase YP_004785041.1 2622661 D 743299 CDS YP_004785042.1 344200716 11043378 2623600..2624799 1 NC_015942.1 TIGRFAM: Argininosuccinate synthase; HAMAP: Argininosuccinate synthase; KEGG: afr:AFE_0404 argininosuccinate synthase; PFAM: Argininosuccinate synthase; argininosuccinate synthase 2624799 11043378 Acife_2638 Acidithiobacillus ferrivorans SS3 argininosuccinate synthase YP_004785042.1 2623600 D 743299 CDS YP_004785043.1 344200717 11043379 2624805..2625122 1 NC_015942.1 PFAM: Protein of unknown function DUF1255; KEGG: afr:AFE_0403 hypothetical protein; hypothetical protein 2625122 11043379 Acife_2639 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785043.1 2624805 D 743299 CDS YP_004785044.1 344200718 11043380 2625133..2625540 1 NC_015942.1 KEGG: afr:AFE_0402 lactoylglutathione lyase; TIGRFAM: Glyoxalase I; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2625540 11043380 Acife_2640 Acidithiobacillus ferrivorans SS3 lactoylglutathione lyase YP_004785044.1 2625133 D 743299 CDS YP_004785045.1 344200719 11043381 complement(2625573..2626298) 1 NC_015942.1 TIGRFAM: DNA polymerase 3, epsilon subunit; DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T/DNA polymerase III; KEGG: afr:AFE_0400 DNA polymerase III, epsilon subunit; SMART: Exonuclease; DNA polymerase III subunit epsilon 2626298 11043381 Acife_2641 Acidithiobacillus ferrivorans SS3 DNA polymerase III subunit epsilon YP_004785045.1 2625573 R 743299 CDS YP_004785046.1 344200720 11043382 complement(2626289..2626765) 1 NC_015942.1 KEGG: afr:AFE_0399 ribonuclease HI; HAMAP: Ribonuclease H; PFAM: Ribonuclease H; ribonuclease H 2626765 11043382 Acife_2642 Acidithiobacillus ferrivorans SS3 ribonuclease H YP_004785046.1 2626289 R 743299 CDS YP_004785047.1 344200721 11043383 complement(2626747..2627547) 1 NC_015942.1 PFAM: Methyltransferase type 11; KEGG: afr:AFE_0398 hypothetical protein; type 11 methyltransferase 2627547 11043383 Acife_2643 Acidithiobacillus ferrivorans SS3 type 11 methyltransferase YP_004785047.1 2626747 R 743299 CDS YP_004785048.1 344200722 11043384 2627656..2628408 1 NC_015942.1 KEGG: afr:AFE_0397 hydroxyacylglutathione hydrolase, putative; TIGRFAM: Hydroxyacylglutathione hydrolase; HAMAP: Hydroxyacylglutathione hydrolase; hydroxyacylglutathione hydrolase 2628408 11043384 Acife_2644 Acidithiobacillus ferrivorans SS3 hydroxyacylglutathione hydrolase YP_004785048.1 2627656 D 743299 CDS YP_004785049.1 344200723 11043385 complement(2628411..2629646) 1 NC_015942.1 PFAM: Peptidase M16, C-terminal; Peptidase M16, N-terminal; KEGG: afr:AFE_0396 peptidase, M16 family; peptidase M16 domain-containing protein 2629646 11043385 Acife_2645 Acidithiobacillus ferrivorans SS3 peptidase M16 domain-containing protein YP_004785049.1 2628411 R 743299 CDS YP_004785050.1 344200724 11043386 complement(2629815..2631893) 1 NC_015942.1 TIGRFAM: Polyribonucleotide nucleotidyltransferase; HAMAP: Polyribonucleotide nucleotidyltransferase; KEGG: afe:Lferr_0559 polyribonucleotide nucleotidyltransferase; PFAM: Exoribonuclease, phosphorolytic domain 1; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; Ribosomal protein S1, RNA binding domain; polyribonucleotide nucleotidyltransferase 2631893 11043386 Acife_2646 Acidithiobacillus ferrivorans SS3 polyribonucleotide nucleotidyltransferase YP_004785050.1 2629815 R 743299 CDS YP_004785051.1 344200725 11043387 complement(2631904..2632173) 1 NC_015942.1 KEGG: afr:AFE_0394 30S ribosomal protein S15; TIGRFAM: Ribosomal protein S15, bacterial-type; PFAM: Ribosomal protein S15; 30S ribosomal protein S15 2632173 11043387 Acife_2647 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S15 YP_004785051.1 2631904 R 743299 CDS YP_004785052.1 344200726 11043388 complement(2632212..2633096) 1 NC_015942.1 TIGRFAM: Pseudouridine synthase II, TruB, N-terminal, bacterial-type; HAMAP: tRNA pseudouridine synthase B; KEGG: afr:AFE_0393 tRNA pseudouridine synthase B; PFAM: Pseudouridine synthase II, TruB, N-terminal; Pseudouridine synthase II, TruB, subfamily 1, C-terminal, bacterial-type; tRNA pseudouridine synthase B 2633096 11043388 Acife_2648 Acidithiobacillus ferrivorans SS3 tRNA pseudouridine synthase B YP_004785052.1 2632212 R 743299 CDS YP_004785053.1 344200727 11043389 complement(2633093..2633488) 1 NC_015942.1 TIGRFAM: Ribosome-binding factor A; HAMAP: Ribosome-binding factor A; KEGG: afr:AFE_0392 ribosome-binding factor A; PFAM: Ribosome-binding factor A; ribosome-binding factor A 2633488 11043389 Acife_2649 Acidithiobacillus ferrivorans SS3 ribosome-binding factor A YP_004785053.1 2633093 R 743299 CDS YP_004785054.1 344200728 11044546 complement(2633498..2636128) 1 NC_015942.1 KEGG: afr:AFE_0391 translation initiation factor IF-2; TIGRFAM: Initiation factor 2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Initiation factor 2 associated region, bacterial; Translation initiation factor IF-2, N-terminal; Translation elongation factor EFTu/EF1A, domain 2; translation initiation factor IF-2 2636128 11044546 Acife_2650 Acidithiobacillus ferrivorans SS3 translation initiation factor IF-2 YP_004785054.1 2633498 R 743299 CDS YP_004785055.1 344200729 11043390 complement(2636188..2637669) 1 NC_015942.1 KEGG: afr:AFE_0390 transcription termination factor NusA; TIGRFAM: Transcription termination factor NusA; Transcription termination factor NusA, C-terminal duplication; PFAM: Transcription factor NusA, N-terminal; Ribosomal protein S1, RNA binding domain; NusA antitermination factor 2637669 11043390 Acife_2651 Acidithiobacillus ferrivorans SS3 NusA antitermination factor YP_004785055.1 2636188 R 743299 CDS YP_004785056.1 344200730 11043391 complement(2637701..2638162) 1 NC_015942.1 KEGG: afe:Lferr_0553 hypothetical protein; HAMAP: Uncharacterised protein family UPF0090, bacteria; PFAM: Uncharacterised protein family UPF0090; ribosome maturation factor rimP 2638162 11043391 Acife_2652 Acidithiobacillus ferrivorans SS3 ribosome maturation factor rimP YP_004785056.1 2637701 R 743299 CDS YP_004785057.1 344200731 11043397 complement(2643725..2644768) 1 NC_015942.1 PFAM: YkuD domain; KEGG: afr:AFE_0382 ErfK/YbiS/YcfS/YnhG family protein; ErfK/YbiS/YcfS/YnhG family protein 2644768 11043397 Acife_2653 Acidithiobacillus ferrivorans SS3 ErfK/YbiS/YcfS/YnhG family protein YP_004785057.1 2643725 R 743299 CDS YP_004785058.1 344200732 11044548 complement(2644765..2644998) 1 NC_015942.1 KEGG: afr:AFE_0381 hypothetical protein; hypothetical protein 2644998 11044548 Acife_2654 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785058.1 2644765 R 743299 CDS YP_004785059.1 344200733 11043398 complement(2645003..2646268) 1 NC_015942.1 PFAM: Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved region; Seryl-tRNA synthetase, class IIa, N-terminal; manually curated; TIGRFAM: Seryl-tRNA synthetase, class IIa; KEGG: afr:AFE_0380 seryl-tRNA synthetase; HAMAP: Seryl-tRNA synthetase; Seryl-tRNA synthetase 2646268 11043398 Acife_2655 Acidithiobacillus ferrivorans SS3 Seryl-tRNA synthetase YP_004785059.1 2645003 R 743299 CDS YP_004785060.1 344200734 11043399 complement(2646261..2647592) 1 NC_015942.1 KEGG: afr:AFE_0379 ATPase, AAA family; PFAM: ATPase, AAA-type, core; SMART: ATPase, AAA+ type, core; AAA ATPase central domain-containing protein 2647592 11043399 Acife_2656 Acidithiobacillus ferrivorans SS3 AAA ATPase central domain-containing protein YP_004785060.1 2646261 R 743299 CDS YP_004785061.1 344200735 11044549 complement(2647620..2648696) 1 NC_015942.1 PFAM: Membrane protein, aromatic hydrocarbon degradation; KEGG: afr:AFE_0378 outer membrane protein transport protein, OMPP1/FadL/TodX family; aromatic hydrocarbon degradation membrane protein 2648696 11044549 Acife_2657 Acidithiobacillus ferrivorans SS3 aromatic hydrocarbon degradation membrane protein YP_004785061.1 2647620 R 743299 CDS YP_004785062.1 344200736 11043400 complement(2648714..2649406) 1 NC_015942.1 TIGRFAM: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; HAMAP: Outer membrane lipoprotein carrier protein LolA, Proteobacteria; KEGG: afr:AFE_0377 outer membrane lipoprotein carrier protein LolA, putative; PFAM: Outer membrane lipoprotein carrier protein LolA; outer-membrane lipoprotein carrier protein 2649406 11043400 Acife_2658 Acidithiobacillus ferrivorans SS3 outer-membrane lipoprotein carrier protein YP_004785062.1 2648714 R 743299 CDS YP_004785063.1 344200737 11044550 complement(2649378..2651693) 1 NC_015942.1 PFAM: Cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; KEGG: afe:Lferr_0546 cell divisionFtsK/SpoIIIE; cell division FtsK/SpoIIIE 2651693 11044550 Acife_2659 Acidithiobacillus ferrivorans SS3 cell division FtsK/SpoIIIE YP_004785063.1 2649378 R 743299 CDS YP_004785064.1 344200738 11043401 2651955..2652923 1 NC_015942.1 KEGG: afr:AFE_0375 thioredoxin-disulfide reductase; TIGRFAM: Thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; thioredoxin reductase 2652923 11043401 Acife_2660 Acidithiobacillus ferrivorans SS3 thioredoxin reductase YP_004785064.1 2651955 D 743299 CDS YP_004785065.1 344200739 11043402 2652929..2653504 1 NC_015942.1 KEGG: afr:AFE_0374 Smr domain protein; PFAM: Smr protein/MutS2 C-terminal; SMART: Smr protein/MutS2 C-terminal; Smr protein/MutS2 2653504 11043402 Acife_2661 Acidithiobacillus ferrivorans SS3 Smr protein/MutS2 YP_004785065.1 2652929 D 743299 CDS YP_004785066.1 344200740 11044551 complement(2653525..2654001) 1 NC_015942.1 KEGG: afr:AFE_0373 transcriptional regulator, MerR family; PFAM: Transcription regulator MerR, DNA binding; HTH transcriptional regulator, MerR; SMART: HTH transcriptional regulator, MerR; MerR family transcriptional regulator 2654001 11044551 Acife_2662 Acidithiobacillus ferrivorans SS3 MerR family transcriptional regulator YP_004785066.1 2653525 R 743299 CDS YP_004785067.1 344200741 11043403 complement(2654078..2655166) 1 NC_015942.1 TIGRFAM: Pseudouridine synthase, TruD; HAMAP: tRNA pseudouridine synthase D; KEGG: afr:AFE_0372 tRNA pseudouridine synthase D; PFAM: Pseudouridine synthase, TruD; tRNA pseudouridine synthase D 2655166 11043403 Acife_2663 Acidithiobacillus ferrivorans SS3 tRNA pseudouridine synthase D YP_004785067.1 2654078 R 743299 CDS YP_004785068.1 344200742 11043404 complement(2655159..2655638) 1 NC_015942.1 TIGRFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; HAMAP: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; KEGG: afe:Lferr_0541 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, core; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 2655638 11043404 Acife_2664 Acidithiobacillus ferrivorans SS3 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase YP_004785068.1 2655159 R 743299 CDS YP_004785069.1 344200743 11043405 complement(2655643..2656356) 1 NC_015942.1 TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; HAMAP: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; KEGG: afr:AFE_0370 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 2656356 11043405 Acife_2665 Acidithiobacillus ferrivorans SS3 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase YP_004785069.1 2655643 R 743299 CDS YP_004785070.1 344200744 11044552 2656510..2659875 1 NC_015942.1 TIGRFAM: Transcription-repair coupling factor; PFAM: DNA/RNA helicase, DEAD/DEAH box type, N-terminal; Transcription factor CarD; DNA/RNA helicase, C-terminal; Transcription-repair-coupling factor; KEGG: afr:AFE_0369 transcription-repair coupling factor; SMART: DEAD-like helicase, N-terminal; DNA/RNA helicase, C-terminal; transcription-repair coupling factor 2659875 11044552 Acife_2666 Acidithiobacillus ferrivorans SS3 transcription-repair coupling factor YP_004785070.1 2656510 D 743299 CDS YP_004785071.1 344200745 11043406 2659890..2661104 1 NC_015942.1 PFAM: Transposase, IS204/IS1001/IS1096/IS1165; KEGG: cph:Cpha266_2270 transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase IS204/IS1001/IS1096/IS1165 family protein 2661104 11043406 Acife_2667 Acidithiobacillus ferrivorans SS3 transposase IS204/IS1001/IS1096/IS1165 family protein YP_004785071.1 2659890 D 743299 CDS YP_004785072.1 344200746 11044553 2661263..2662381 1 NC_015942.1 KEGG: afe:Lferr_0538 phosphoserine phosphatase SerB; TIGRFAM: Phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB, PSPase-like; PFAM: Haloacid dehalogenase-like hydrolase; phosphoserine phosphatase SerB 2662381 11044553 Acife_2669 Acidithiobacillus ferrivorans SS3 phosphoserine phosphatase SerB YP_004785072.1 2661263 D 743299 CDS YP_004785073.1 344200747 11043408 2662521..2663264 1 NC_015942.1 KEGG: afr:AFE_0367 AhpC/TSA family/glutaredoxin domain protein; TIGRFAM: Glutaredoxin-like region; PFAM: Redoxin; Glutaredoxin; glutaredoxin domain-containing protein region 2663264 11043408 Acife_2670 Acidithiobacillus ferrivorans SS3 glutaredoxin domain-containing protein region YP_004785073.1 2662521 D 743299 CDS YP_004785074.1 344200748 11043409 2663345..2664694 1 NC_015942.1 KEGG: afr:AFE_0366 glutathione reductase; TIGRFAM: Glutathione reductase, animal/bacterial; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; glutathione-disulfide reductase 2664694 11043409 Acife_2671 Acidithiobacillus ferrivorans SS3 glutathione-disulfide reductase YP_004785074.1 2663345 D 743299 CDS YP_004785075.1 344200749 11044554 complement(2664719..2665531) 1 NC_015942.1 KEGG: afr:AFE_0365 methylthioadenosine phosphorylase; TIGRFAM: Methylthioadenosine phosphorylase; PFAM: Nucleoside phosphorylase; methylthioadenosine phosphorylase 2665531 11044554 Acife_2672 Acidithiobacillus ferrivorans SS3 methylthioadenosine phosphorylase YP_004785075.1 2664719 R 743299 CDS YP_004785076.1 344200750 11043410 complement(2665531..2666079) 1 NC_015942.1 PFAM: Phosphoribosyltransferase; KEGG: afr:AFE_0364 hypoxanthine-guanine phosphoribosyltransferase, putative; phosphoribosyltransferase 2666079 11043410 Acife_2673 Acidithiobacillus ferrivorans SS3 phosphoribosyltransferase YP_004785076.1 2665531 R 743299 CDS YP_004785077.1 344200751 11044555 complement(2666084..2666461) 1 NC_015942.1 KEGG: afr:AFE_0363 hypothetical protein; hypothetical protein 2666461 11044555 Acife_2674 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785077.1 2666084 R 743299 CDS YP_004785078.1 344200752 11043411 complement(2666572..2666928) 1 NC_015942.1 KEGG: afr:AFE_0362 hypothetical protein; hypothetical protein 2666928 11043411 Acife_2675 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785078.1 2666572 R 743299 CDS YP_004785079.1 344200753 11043412 complement(2666952..2667305) 1 NC_015942.1 KEGG: afr:AFE_0361 hypothetical protein; hypothetical protein 2667305 11043412 Acife_2676 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785079.1 2666952 R 743299 CDS YP_004785080.1 344200754 11043413 complement(2667470..2668180) 1 NC_015942.1 KEGG: afr:AFE_0360 PAP2 family protein; PFAM: Phosphatidic acid phosphatase type 2/haloperoxidase; SMART: Phosphatidic acid phosphatase type 2/haloperoxidase; phosphoesterase PA-phosphatase-like protein 2668180 11043413 Acife_2677 Acidithiobacillus ferrivorans SS3 phosphoesterase PA-phosphatase-like protein YP_004785080.1 2667470 R 743299 CDS YP_004785081.1 344200755 11043414 complement(2668220..2668585) 1 NC_015942.1 PFAM: Diacylglycerol kinase, prokaryotic; KEGG: afr:AFE_0359 diacylglycerol kinase; diacylglycerol kinase 2668585 11043414 Acife_2678 Acidithiobacillus ferrivorans SS3 diacylglycerol kinase YP_004785081.1 2668220 R 743299 CDS YP_004785082.1 344200756 11043415 complement(2668582..2669256) 1 NC_015942.1 KEGG: afr:AFE_0358 DNA repair protein RadC; TIGRFAM: DNA repair, RadC-like; PFAM: DNA repair, RadC-like; DNA repair protein RadC 2669256 11043415 Acife_2679 Acidithiobacillus ferrivorans SS3 DNA repair protein RadC YP_004785082.1 2668582 R 743299 CDS YP_004785083.1 344200757 11043416 2669292..2670545 1 NC_015942.1 KEGG: afr:AFE_0357 phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; TIGRFAM: Bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: Flavoprotein; DNA/pantothenate metabolism flavoprotein, C-terminal; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase 2670545 11043416 Acife_2680 Acidithiobacillus ferrivorans SS3 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase YP_004785083.1 2669292 D 743299 CDS YP_004785084.1 344200758 11043417 2670538..2670990 1 NC_015942.1 KEGG: afr:AFE_0356 deoxyuridine 5`-triphosphate nucleotidohydrolase; TIGRFAM: DeoxyUTP pyrophosphatase domain, subfamily 1,; PFAM: DeoxyUTP pyrophosphatase domain; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 2670990 11043417 Acife_2681 Acidithiobacillus ferrivorans SS3 deoxyuridine 5'-triphosphate nucleotidohydrolase Dut YP_004785084.1 2670538 D 743299 CDS YP_004785085.1 344200759 11043418 complement(2671149..2671523) 1 NC_015942.1 TIGRFAM: Ribosomal protein L17; HAMAP: 50S ribosomal protein L17; KEGG: afr:AFE_0355 50S ribosomal protein L17; PFAM: Ribosomal protein L17; 50S ribosomal protein L17 2671523 11043418 Acife_2682 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L17 YP_004785085.1 2671149 R 743299 CDS YP_004785086.1 344200760 11043419 complement(2671554..2672573) 1 NC_015942.1 SMART: DNA-directed RNA polymerase, RpoA/D/Rpb3-type; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; KEGG: afr:AFE_0354 DNA-directed RNA polymerase subunit alpha; HAMAP: DNA-directed RNA polymerase, alpha subunit; PFAM: DNA-directed RNA polymerase, insert; DNA-directed RNA polymerase, dimerisation; RNA polymerase, alpha subunit, C-terminal; DNA-directed RNA polymerase subunit alpha 2672573 11043419 Acife_2683 Acidithiobacillus ferrivorans SS3 DNA-directed RNA polymerase subunit alpha YP_004785086.1 2671554 R 743299 CDS YP_004785087.1 344200761 11044556 complement(2672596..2673222) 1 NC_015942.1 TIGRFAM: Ribosomal protein S4, bacterial-type; PFAM: Ribosomal protein S4; RNA-binding S4; KEGG: afr:AFE_0353 ribosomal protein S4; SMART: RNA-binding S4; 30S ribosomal protein S4 2673222 11044556 Acife_2684 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S4 YP_004785087.1 2672596 R 743299 CDS YP_004785088.1 344200762 11043420 complement(2673243..2673638) 1 NC_015942.1 KEGG: afr:AFE_0352 ribosomal protein S11; TIGRFAM: Ribosomal protein S11, bacterial-type; PFAM: Ribosomal protein S11; 30S ribosomal protein S11 2673638 11043420 Acife_2685 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S11 YP_004785088.1 2673243 R 743299 CDS YP_004785089.1 344200763 11043421 complement(2673656..2674012) 1 NC_015942.1 KEGG: afr:AFE_0351 30S ribosomal protein S13; TIGRFAM: Ribosomal protein S13, bacterial-type; PFAM: Ribosomal protein S13; 30S ribosomal protein S13 2674012 11043421 Acife_2686 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S13 YP_004785089.1 2673656 R 743299 CDS YP_004785090.1 344200764 11044557 complement(2674076..2674189) 1 NC_015942.1 PFAM: Ribosomal protein L36; manually curated; TIGRFAM: Ribosomal protein L36; KEGG: afr:AFE_0350 50S ribosomal protein L36; HAMAP: Ribosomal protein L36; 50S ribosomal protein L36 2674189 11044557 Acife_2687 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L36 YP_004785090.1 2674076 R 743299 CDS YP_004785091.1 344200765 11043422 complement(2674199..2674417) 1 NC_015942.1 TIGRFAM: Translation initiation factor IF-1; HAMAP: Translation initiation factor IF-1; KEGG: afr:AFE_0349 translation initiation factor IF-1; PFAM: S1, IF1 type; translation initiation factor IF-1 2674417 11043422 Acife_2688 Acidithiobacillus ferrivorans SS3 translation initiation factor IF-1 YP_004785091.1 2674199 R 743299 CDS YP_004785092.1 344200766 11043423 complement(2674418..2675080) 1 NC_015942.1 TIGRFAM: Adenylate kinase, subfamily; HAMAP: Adenylate kinase; KEGG: afe:Lferr_0518 nucleoside-triphosphate--adenylate kinase; PFAM: Adenylate kinase; Adenylate kinase, zinc-finger lid region; adenylate kinase 2675080 11043423 Acife_2689 Acidithiobacillus ferrivorans SS3 adenylate kinase YP_004785092.1 2674418 R 743299 CDS YP_004785093.1 344200767 11043424 complement(2675077..2676408) 1 NC_015942.1 KEGG: afr:AFE_0347 preprotein translocase, SecY subunit; TIGRFAM: SecY protein; PFAM: SecY protein; preprotein translocase subunit SecY 2676408 11043424 Acife_2690 Acidithiobacillus ferrivorans SS3 preprotein translocase subunit SecY YP_004785093.1 2675077 R 743299 CDS YP_004785094.1 344200768 11043425 complement(2676408..2676845) 1 NC_015942.1 KEGG: afr:AFE_0346 50S ribosomal protein L15; TIGRFAM: Ribosomal protein L15, bacterial-type; PFAM: Ribosomal protein L15; 50S ribosomal protein L15 2676845 11043425 Acife_2691 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L15 YP_004785094.1 2676408 R 743299 CDS YP_004785095.1 344200769 11043426 complement(2676842..2677027) 1 NC_015942.1 KEGG: afr:AFE_0345 50S ribosomal protein L30; TIGRFAM: Ribosomal protein L30, bacterial-type; PFAM: Ribosomal protein L30p/L7e, conserved region; 50S ribosomal protein L30 2677027 11043426 Acife_2692 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L30 YP_004785095.1 2676842 R 743299 CDS YP_004785096.1 344200770 11043427 complement(2677020..2677550) 1 NC_015942.1 KEGG: afr:AFE_0344 30S ribosomal protein S5; TIGRFAM: Ribosomal protein S5, bacterial-type; PFAM: Ribosomal protein S5, C-terminal; Ribosomal protein S5, N-terminal; 30S ribosomal protein S5 2677550 11043427 Acife_2693 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S5 YP_004785096.1 2677020 R 743299 CDS YP_004785097.1 344200771 11044558 complement(2677563..2677916) 1 NC_015942.1 KEGG: afr:AFE_0343 50S ribosomal protein L18; TIGRFAM: Ribosomal protein L18, bacterial; PFAM: Ribosomal protein L18/L5; 50S ribosomal protein L18 2677916 11044558 Acife_2694 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L18 YP_004785097.1 2677563 R 743299 CDS YP_004785098.1 344200772 11043428 complement(2677935..2678459) 1 NC_015942.1 KEGG: afr:AFE_0342 50S ribosomal protein L6; TIGRFAM: Ribosomal protein L6, bacterial-type; PFAM: Ribosomal protein L6, alpha-beta domain; 50S ribosomal protein L6 2678459 11043428 Acife_2695 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L6 YP_004785098.1 2677935 R 743299 CDS YP_004785099.1 344200773 11043429 complement(2678473..2678868) 1 NC_015942.1 PFAM: Ribosomal protein S8; KEGG: afr:AFE_0341 30S ribosomal protein S8; 30S ribosomal protein S8 2678868 11043429 Acife_2696 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S8 YP_004785099.1 2678473 R 743299 CDS YP_004785100.1 344200774 11044559 complement(2678878..2679063) 1 NC_015942.1 KEGG: afr:AFE_0340 30S ribosomal protein S14; manually curated; PFAM: Ribosomal protein S14; 30S ribosomal protein S14 2679063 11044559 Acife_2697 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S14 YP_004785100.1 2678878 R 743299 CDS YP_004785101.1 344200775 11043430 complement(2679077..2679619) 1 NC_015942.1 PFAM: Ribosomal protein L5; KEGG: afr:AFE_0339 50S ribosomal protein L5; 50S ribosomal protein L5 2679619 11043430 Acife_2698 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L5 YP_004785101.1 2679077 R 743299 CDS YP_004785102.1 344200776 11044560 complement(2679634..2679954) 1 NC_015942.1 TIGRFAM: Ribosomal protein L24; PFAM: KOW; KEGG: afr:AFE_0338 50S ribosomal protein L24; SMART: KOW; 50S ribosomal protein L24 2679954 11044560 Acife_2699 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L24 YP_004785102.1 2679634 R 743299 CDS YP_004785103.1 344200777 11043431 complement(2679964..2680332) 1 NC_015942.1 KEGG: afr:AFE_0337 50S ribosomal protein L14; TIGRFAM: Ribosomal protein L14, bacterial-type; PFAM: Ribosomal protein L14b/L23e; 50S ribosomal protein L14 2680332 11043431 Acife_2700 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L14 YP_004785103.1 2679964 R 743299 CDS YP_004785104.1 344200778 11043432 complement(2680329..2680604) 1 NC_015942.1 KEGG: afr:AFE_0336 ribosomal protein S17; TIGRFAM: Ribosomal protein S17, bacterial-type; PFAM: Ribosomal protein S17; 30S ribosomal protein S17 2680604 11043432 Acife_2701 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S17 YP_004785104.1 2680329 R 743299 CDS YP_004785105.1 344200779 11044561 complement(2680601..2680798) 1 NC_015942.1 KEGG: afr:AFE_0335 50S ribosomal protein L29; TIGRFAM: Ribosomal protein L29; PFAM: Ribosomal protein L29; 50S ribosomal protein L29 2680798 11044561 Acife_2702 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L29 YP_004785105.1 2680601 R 743299 CDS YP_004785106.1 344200780 11043433 complement(2680795..2681211) 1 NC_015942.1 TIGRFAM: Ribosomal protein L16; HAMAP: Ribosomal protein L16; KEGG: afr:AFE_0334 50S ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; 50S ribosomal protein L16 2681211 11043433 Acife_2703 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L16 YP_004785106.1 2680795 R 743299 CDS YP_004785107.1 344200781 11043434 complement(2681224..2681886) 1 NC_015942.1 TIGRFAM: Ribosomal protein S3, bacterial; PFAM: Ribosomal protein S3, C-terminal; K Homology, type 2; Ribosomal protein S3, N-terminal; KEGG: afr:AFE_0333 ribosomal protein S3; SMART: K Homology; 30S ribosomal protein S3 2681886 11043434 Acife_2704 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S3 YP_004785107.1 2681224 R 743299 CDS YP_004785108.1 344200782 11043435 complement(2681898..2682230) 1 NC_015942.1 manually curated; TIGRFAM: Ribosomal protein L22, bacterial-type; KEGG: afr:AFE_0332 50S ribosomal protein L22; PFAM: Ribosomal protein L22/L17; 50S ribosomal protein L22 2682230 11043435 Acife_2705 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L22 YP_004785108.1 2681898 R 743299 CDS YP_004785109.1 344200783 11044562 complement(2682242..2682517) 1 NC_015942.1 KEGG: afr:AFE_0331 30S ribosomal protein S19; TIGRFAM: Ribosomal protein S19, bacterial-type; PFAM: Ribosomal protein S19/S15; 30S ribosomal protein S19 2682517 11044562 Acife_2706 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S19 YP_004785109.1 2682242 R 743299 CDS YP_004785110.1 344200784 11043436 complement(2682536..2683360) 1 NC_015942.1 KEGG: afr:AFE_0330 50S ribosomal protein L2; TIGRFAM: Ribosomal protein L2, bacterial-type; PFAM: Ribosomal protein L2; 50S ribosomal protein L2 2683360 11043436 Acife_2707 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L2 YP_004785110.1 2682536 R 743299 CDS YP_004785111.1 344200785 11043437 complement(2683377..2683670) 1 NC_015942.1 PFAM: Ribosomal protein L25/L23; KEGG: afr:AFE_0329 50S ribosomal protein L23; 50S ribosomal protein L25/L23 2683670 11043437 Acife_2708 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L25/L23 YP_004785111.1 2683377 R 743299 CDS YP_004785112.1 344200786 11044563 complement(2683667..2684284) 1 NC_015942.1 PFAM: Ribosomal protein L4/L1e; KEGG: afr:AFE_0328 50S ribosomal protein L4; 50S ribosomal protein L4/L1e 2684284 11044563 Acife_2709 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L4/L1e YP_004785112.1 2683667 R 743299 CDS YP_004785113.1 344200787 11043438 complement(2684295..2684927) 1 NC_015942.1 KEGG: afr:AFE_0327 50S ribosomal protein L3; TIGRFAM: Ribosomal protein L3, bacterial/organelle-type; PFAM: Ribosomal protein L3; 50S ribosomal protein L3 2684927 11043438 Acife_2710 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L3 YP_004785113.1 2684295 R 743299 CDS YP_004785114.1 344200788 11043439 complement(2684945..2685253) 1 NC_015942.1 TIGRFAM: Ribosomal protein S10, bacterial; HAMAP: 30S ribosomal protein S10; KEGG: afr:AFE_0326 30S ribosomal protein S10; PFAM: Ribosomal protein S10; 30S ribosomal protein S10 2685253 11043439 Acife_2711 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S10 YP_004785114.1 2684945 R 743299 CDS YP_004785115.1 344200789 11044564 complement(2685253..2686443) 1 NC_015942.1 KEGG: afr:AFE_0325 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal; translation elongation factor Tu 2686443 11044564 Acife_2712 Acidithiobacillus ferrivorans SS3 translation elongation factor Tu YP_004785115.1 2685253 R 743299 CDS YP_004785116.1 344200790 11043440 complement(2686464..2688563) 1 NC_015942.1 KEGG: afr:AFE_0324 elongation factor G; TIGRFAM: Translation elongation factor EFG/EF2; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFG/EF2, domain IV; Translation elongation factor EFG/EF2, C-terminal; translation elongation factor G 2688563 11043440 Acife_2713 Acidithiobacillus ferrivorans SS3 translation elongation factor G YP_004785116.1 2686464 R 743299 CDS YP_004785117.1 344200791 11043441 complement(2688595..2689065) 1 NC_015942.1 KEGG: afr:AFE_0323 30S ribosomal protein S7; TIGRFAM: Ribosomal protein S7, bacterial-type; PFAM: Ribosomal protein S7; 30S ribosomal protein S7 2689065 11043441 Acife_2714 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S7 YP_004785117.1 2688595 R 743299 CDS YP_004785118.1 344200792 11043442 complement(2689092..2689463) 1 NC_015942.1 KEGG: afr:AFE_0322 30S ribosomal protein S12; TIGRFAM: Ribosomal protein S12, bacterial-type; PFAM: Ribosomal protein S12/S23; 30S ribosomal protein S12 2689463 11043442 Acife_2715 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S12 YP_004785118.1 2689092 R 743299 CDS YP_004785119.1 344200793 11043443 complement(2689571..2693734) 1 NC_015942.1 SMART: RNA polymerase, N-terminal; TIGRFAM: DNA-directed RNA polymerase, subunit beta-prime; KEGG: afe:Lferr_0491 DNA-directed RNA polymerase subunit beta'; HAMAP: DNA-directed RNA polymerase subunit beta'; PFAM: RNA polymerase Rpb1, domain 1; RNA polymerase, alpha subunit; RNA polymerase Rpb1, domain 3; RNA polymerase Rpb1, domain 4; RNA polymerase Rpb1, domain 5; DNA-directed RNA polymerase subunit beta' 2693734 11043443 Acife_2716 Acidithiobacillus ferrivorans SS3 DNA-directed RNA polymerase subunit beta' YP_004785119.1 2689571 R 743299 CDS YP_004785120.1 344200794 11044565 complement(2693758..2697846) 1 NC_015942.1 TIGRFAM: DNA-directed RNA polymerase, beta subunit, bacterial-type; HAMAP: DNA-directed RNA polymerase subunit beta; KEGG: afr:AFE_0320 DNA-directed RNA polymerase, beta subunit; PFAM: DNA-directed RNA polymerase, subunit 2, domain 6; RNA polymerase Rpb2, domain 3; RNA polymerase, beta subunit, protrusion; RNA polymerase Rpb2, domain 2; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2, domain 7; DNA-directed RNA polymerase subunit beta 2697846 11044565 Acife_2717 Acidithiobacillus ferrivorans SS3 DNA-directed RNA polymerase subunit beta YP_004785120.1 2693758 R 743299 CDS YP_004785121.1 344200795 11043444 complement(2697969..2698355) 1 NC_015942.1 TIGRFAM: Ribosomal protein L7/L12; HAMAP: Ribosomal protein L7/L12; KEGG: afr:AFE_0318 50S ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12, C-terminal; 50S ribosomal protein L7/L12 2698355 11043444 Acife_2718 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L7/L12 YP_004785121.1 2697969 R 743299 CDS YP_004785122.1 344200796 11044566 complement(2698385..2698906) 1 NC_015942.1 KEGG: afr:AFE_0317 50S ribosomal protein L10; HAMAP: 50S ribosomal protein L10; PFAM: Ribosomal protein L10; 50S ribosomal protein L10 2698906 11044566 Acife_2719 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L10 YP_004785122.1 2698385 R 743299 CDS YP_004785123.1 344200797 11043445 complement(2699051..2699743) 1 NC_015942.1 KEGG: afr:AFE_0316 50S ribosomal protein L1; TIGRFAM: Ribosomal protein L1, bacterial-type; PFAM: Ribosomal protein L1; 50S ribosomal protein L1 2699743 11043445 Acife_2720 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L1 YP_004785123.1 2699051 R 743299 CDS YP_004785124.1 344200798 11043446 complement(2699747..2700175) 1 NC_015942.1 TIGRFAM: Ribosomal protein L11, bacterial-type; PFAM: Ribosomal protein L11, C-terminal; Ribosomal protein L11, N-terminal; KEGG: afr:AFE_0315 50S ribosomal protein L11; SMART: Ribosomal protein L11; 50S ribosomal protein L11 2700175 11043446 Acife_2721 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L11 YP_004785124.1 2699747 R 743299 CDS YP_004785125.1 344200799 11043447 complement(2700230..2700763) 1 NC_015942.1 TIGRFAM: Transcription antitermination protein, NusG; PFAM: Transcription antitermination protein, NusG, N-terminal; KOW; KEGG: afr:AFE_0314 transcription termination/antitermination factor NusG; SMART: Transcription antitermination protein, NusG, N-terminal; KOW; NusG antitermination factor 2700763 11043447 Acife_2722 Acidithiobacillus ferrivorans SS3 NusG antitermination factor YP_004785125.1 2700230 R 743299 CDS YP_004785126.1 344200800 11043448 complement(2700764..2701114) 1 NC_015942.1 KEGG: afr:AFE_0313 preprotein translocase, SecE subunit; TIGRFAM: SecE subunit of protein translocation complex; PFAM: Protein secE/sec61-gamma protein; preprotein translocase subunit SecE 2701114 11043448 Acife_2723 Acidithiobacillus ferrivorans SS3 preprotein translocase subunit SecE YP_004785126.1 2700764 R 743299 CDS YP_004785127.1 344200801 11043450 complement(2701265..2702455) 1 NC_015942.1 KEGG: afr:AFE_0325 elongation factor Tu; TIGRFAM: Translation elongation factor EFTu/EF1A, bacterial/organelle; Small GTP-binding protein; PFAM: Protein synthesis factor, GTP-binding; Translation elongation factor EFTu/EF1A, domain 2; Translation elongation factor EFTu/EF1A, C-terminal; translation elongation factor Tu 2702455 11043450 Acife_2724 Acidithiobacillus ferrivorans SS3 translation elongation factor Tu YP_004785127.1 2701265 R 743299 CDS YP_004785128.1 344200802 11043454 2703033..2703674 1 NC_015942.1 PFAM: Outer membrane protein, OmpA/MotB, C-terminal; KEGG: afr:AFE_0306 OmpA family protein; OmpA/MotB domain-containing protein 2703674 11043454 Acife_2725 Acidithiobacillus ferrivorans SS3 OmpA/MotB domain-containing protein YP_004785128.1 2703033 D 743299 CDS YP_004785129.1 344200803 11044567 2703774..2705456 1 NC_015942.1 KEGG: afr:AFE_0305 2-polyprenylphenol 6-hydroxylase; TIGRFAM: 2-polyprenylphenol 6-hydroxylase; PFAM: ABC-1; 2-polyprenylphenol 6-hydroxylase 2705456 11044567 Acife_2726 Acidithiobacillus ferrivorans SS3 2-polyprenylphenol 6-hydroxylase YP_004785129.1 2703774 D 743299 CDS YP_004785130.1 344200804 11044568 2705514..2705867 1 NC_015942.1 KEGG: afr:AFE_0304 hypothetical protein; hypothetical protein 2705867 11044568 Acife_2727 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785130.1 2705514 D 743299 CDS YP_004785131.1 344200805 11043455 complement(2705883..2706455) 1 NC_015942.1 KEGG: afr:AFE_0303 hypothetical protein; PFAM: Sel1-like; SMART: Sel1-like; Sel1 domain-containing protein repeat-containing protein 2706455 11043455 Acife_2728 Acidithiobacillus ferrivorans SS3 Sel1 domain-containing protein repeat-containing protein YP_004785131.1 2705883 R 743299 CDS YP_004785132.1 344200806 11043456 complement(2706619..2706939) 1 NC_015942.1 KEGG: afr:AFE_0302 hypothetical protein; hypothetical protein 2706939 11043456 Acife_2729 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785132.1 2706619 R 743299 CDS YP_004785133.1 344200807 11043457 complement(2707057..2707500) 1 NC_015942.1 TIGRFAM: NusB antitermination factor; HAMAP: N utilization substance protein B-like protein; KEGG: afr:AFE_0301 transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; NusB antitermination factor 2707500 11043457 Acife_2730 Acidithiobacillus ferrivorans SS3 NusB antitermination factor YP_004785133.1 2707057 R 743299 CDS YP_004785134.1 344200808 11043458 complement(2707510..2707974) 1 NC_015942.1 TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; HAMAP: 6,7-dimethyl-8-ribityllumazine synthase; KEGG: afr:AFE_0300 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 6,7-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase 2707974 11043458 Acife_2731 Acidithiobacillus ferrivorans SS3 6,7-dimethyl-8-ribityllumazine synthase YP_004785134.1 2707510 R 743299 CDS YP_004785135.1 344200809 11043459 complement(2707971..2709104) 1 NC_015942.1 TIGRFAM: DHBP synthase RibB; HAMAP: 3,4-dihydroxy-2-butanone 4-phosphate synthase; KEGG: afr:AFE_0299 3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II; PFAM: DHBP synthase RibB; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase 2709104 11043459 Acife_2732 Acidithiobacillus ferrivorans SS3 3,4-dihydroxy-2-butanone 4-phosphate synthase YP_004785135.1 2707971 R 743299 CDS YP_004785136.1 344200810 11043460 complement(2709101..2709757) 1 NC_015942.1 KEGG: afr:AFE_0298 riboflavin synthase, alpha subunit; TIGRFAM: Lumazine-binding protein; PFAM: Lumazine-binding protein; riboflavin synthase subunit alpha 2709757 11043460 Acife_2733 Acidithiobacillus ferrivorans SS3 riboflavin synthase subunit alpha YP_004785136.1 2709101 R 743299 CDS YP_004785137.1 344200811 11044569 complement(2709761..2710864) 1 NC_015942.1 TIGRFAM: Riboflavin biosynthesis protein RibD; Riboflavin-specific deaminase, C-terminal; KEGG: afr:AFE_0297 riboflavin biosynthesis protein RibD; PFAM: Bacterial bifunctional deaminase-reductase, C-terminal; CMP/dCMP deaminase, zinc-binding; riboflavin biosynthesis protein RibD 2710864 11044569 Acife_2734 Acidithiobacillus ferrivorans SS3 riboflavin biosynthesis protein RibD YP_004785137.1 2709761 R 743299 CDS YP_004785138.1 344200812 11044570 complement(2710854..2711345) 1 NC_015942.1 TIGRFAM: Ribonucleotide reductase regulator NrdR-like; HAMAP: Transcriptional repressor nrdR; KEGG: afr:AFE_0296 transcriptional regulator NrdR; PFAM: ATP-cone; transcriptional repressor nrdR 2711345 11044570 Acife_2735 Acidithiobacillus ferrivorans SS3 transcriptional repressor nrdR YP_004785138.1 2710854 R 743299 CDS YP_004785139.1 344200813 11043461 complement(2711352..2712596) 1 NC_015942.1 PFAM: Serine hydroxymethyltransferase; KEGG: afr:AFE_0295 serine hydroxymethyltransferase; glycine hydroxymethyltransferase 2712596 11043461 Acife_2736 Acidithiobacillus ferrivorans SS3 glycine hydroxymethyltransferase YP_004785139.1 2711352 R 743299 CDS YP_004785140.1 344200814 11043462 complement(2712730..2713509) 1 NC_015942.1 KEGG: afe:Lferr_0470 hypothetical protein; hypothetical protein 2713509 11043462 Acife_2737 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785140.1 2712730 R 743299 CDS YP_004785141.1 344200815 11043463 2713705..2714856 1 NC_015942.1 TIGRFAM: Homoserine O-acetyltransferase; HAMAP: Homoserine O-acetyltransferase; KEGG: afr:AFE_0293 homoserine O-acetyltransferase; PFAM: Alpha/beta hydrolase fold-1; homoserine O-acetyltransferase 2714856 11043463 Acife_2738 Acidithiobacillus ferrivorans SS3 homoserine O-acetyltransferase YP_004785141.1 2713705 D 743299 CDS YP_004785142.1 344200816 11043464 2714853..2715458 1 NC_015942.1 KEGG: afr:AFE_0292 methionine biosynthesis protein MetW; TIGRFAM: Methionine biosynthesis MetW; PFAM: Methionine biosynthesis MetW; methionine biosynthesis protein MetW 2715458 11043464 Acife_2739 Acidithiobacillus ferrivorans SS3 methionine biosynthesis protein MetW YP_004785142.1 2714853 D 743299 CDS YP_004785143.1 344200817 11043465 2715478..2716134 1 NC_015942.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: afr:AFE_0291 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 2716134 11043465 Acife_2740 Acidithiobacillus ferrivorans SS3 glutathione S-transferase domain-containing protein YP_004785143.1 2715478 D 743299 CDS YP_004785144.1 344200818 11043466 2716182..2716967 1 NC_015942.1 TIGRFAM: UbiE/COQ5 methyltransferase; HAMAP: UbiE/COQ5 methyltransferase; KEGG: afr:AFE_0289 ubiquinone/menaquinone biosynthesis methlytransferase UbiE; PFAM: UbiE/COQ5 methyltransferase; Ubiquinone/menaquinone biosynthesis methyltransferase ubiE 2716967 11043466 Acife_2741 Acidithiobacillus ferrivorans SS3 Ubiquinone/menaquinone biosynthesis methyltransferase ubiE YP_004785144.1 2716182 D 743299 CDS YP_004785145.1 344200819 11044571 2717063..2719417 1 NC_015942.1 TIGRFAM: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; HAMAP: 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; KEGG: afr:AFE_0288 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase; PFAM: Methionine synthase, vitamin-B12 independent; Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal; 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase 2719417 11044571 Acife_2742 Acidithiobacillus ferrivorans SS3 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase YP_004785145.1 2717063 D 743299 CDS YP_004785146.1 344200820 11044572 2719582..2720211 1 NC_015942.1 PFAM: Carbonic anhydrase; KEGG: afr:AFE_0287 carbonic anhydrase; carbonic anhydrase 2720211 11044572 Acife_2743 Acidithiobacillus ferrivorans SS3 carbonic anhydrase YP_004785146.1 2719582 D 743299 CDS YP_004785147.1 344200821 11043467 2720221..2721771 1 NC_015942.1 PFAM: Sulphate transporter; KEGG: afr:AFE_0286 sulfate transporter family protein; sulfate transporter 2721771 11043467 Acife_2744 Acidithiobacillus ferrivorans SS3 sulfate transporter YP_004785147.1 2720221 D 743299 CDS YP_004785148.1 344200822 11043468 2721879..2722190 1 NC_015942.1 TIGRFAM: Ribosomal protein L21; HAMAP: Ribosomal protein L21; KEGG: afr:AFE_0285 50S ribosomal protein L21; PFAM: Ribosomal protein L21; 50S ribosomal protein L21 2722190 11043468 Acife_2745 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L21 YP_004785148.1 2721879 D 743299 CDS YP_004785149.1 344200823 11043469 2722202..2722462 1 NC_015942.1 TIGRFAM: Ribosomal protein L27; HAMAP: Ribosomal protein L27; KEGG: afr:AFE_0284 50S ribosomal protein L27; PFAM: Ribosomal protein L27; 50S ribosomal protein L27 2722462 11043469 Acife_2746 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L27 YP_004785149.1 2722202 D 743299 CDS YP_004785150.1 344200824 11043470 2722517..2723641 1 NC_015942.1 TIGRFAM: GTP-binding protein Obg/CgtA; HAMAP: GTPase obg; KEGG: afr:AFE_0283 GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG subdomain; GTP-binding protein, HSR1-related; GTPase obg 2723641 11043470 Acife_2747 Acidithiobacillus ferrivorans SS3 GTPase obg YP_004785150.1 2722517 D 743299 CDS YP_004785151.1 344200825 11043471 2723638..2724768 1 NC_015942.1 SMART: Pseudouridine synthase/archaeosine transglycosylase; TIGRFAM: Glutamate 5-kinase, ProB-related; KEGG: afr:AFE_0281 glutamate 5-kinase; HAMAP: Glutamate 5-kinase; PFAM: Aspartate/glutamate/uridylate kinase; Pseudouridine synthase/archaeosine transglycosylase; glutamate 5-kinase 2724768 11043471 Acife_2748 Acidithiobacillus ferrivorans SS3 glutamate 5-kinase YP_004785151.1 2723638 D 743299 CDS YP_004785152.1 344200826 11043472 complement(2724765..2725238) 1 NC_015942.1 PFAM: Ferric-uptake regulator; KEGG: afr:AFE_0282 ferric uptake regulation protein; Fur family ferric uptake regulator 2725238 11043472 Acife_2749 Acidithiobacillus ferrivorans SS3 Fur family ferric uptake regulator YP_004785152.1 2724765 R 743299 CDS YP_004785153.1 344200827 11043473 2725305..2725652 1 NC_015942.1 PFAM: SmpA/OmlA; KEGG: afr:AFE_0279 lipoprotein, SmpA/OmlA family; SmpA/OmlA domain-containing protein 2725652 11043473 Acife_2750 Acidithiobacillus ferrivorans SS3 SmpA/OmlA domain-containing protein YP_004785153.1 2725305 D 743299 CDS YP_004785154.1 344200828 11043474 complement(2725642..2726133) 1 NC_015942.1 PFAM: Streptomyces cyclase/dehydrase; KEGG: afr:AFE_0280 hypothetical protein; cyclase/dehydrase 2726133 11043474 Acife_2751 Acidithiobacillus ferrivorans SS3 cyclase/dehydrase YP_004785154.1 2725642 R 743299 CDS YP_004785155.1 344200829 11043475 complement(2726143..2727312) 1 NC_015942.1 KEGG: afe:Lferr_0455 phospholipase D/transphosphatidylase; phospholipase D/transphosphatidylase 2727312 11043475 Acife_2752 Acidithiobacillus ferrivorans SS3 phospholipase D/transphosphatidylase YP_004785155.1 2726143 R 743299 CDS YP_004785156.1 344200830 11043476 2727440..2727904 1 NC_015942.1 TIGRFAM: SsrA-binding protein; HAMAP: SsrA-binding protein; KEGG: afr:AFE_0277 SsrA-binding protein; PFAM: SsrA-binding protein; SsrA-binding protein 2727904 11043476 Acife_2753 Acidithiobacillus ferrivorans SS3 SsrA-binding protein YP_004785156.1 2727440 D 743299 CDS YP_004785157.1 344200831 11044573 2727897..2729594 1 NC_015942.1 PFAM: Glycosyl transferase, family 39; KEGG: afr:AFE_0276 dolichyl-phosphate-mannose-protein mannosyltransferase family protein; glycosyl transferase family protein 2729594 11044573 Acife_2754 Acidithiobacillus ferrivorans SS3 glycosyl transferase family protein YP_004785157.1 2727897 D 743299 CDS YP_004785158.1 344200832 11044574 2729773..2730285 1 NC_015942.1 PFAM: Disulphide bond formation protein DsbB; KEGG: afr:AFE_0274 disulfide bond formation protein B, putative; disulfide bond formation protein DsbB 2730285 11044574 Acife_2756 Acidithiobacillus ferrivorans SS3 disulfide bond formation protein DsbB YP_004785158.1 2729773 D 743299 CDS YP_004785159.1 344200833 11044575 complement(2730320..2731453) 1 NC_015942.1 KEGG: afr:AFE_0273 phosphoribosylaminoimidazole carboxylase, ATPase subunit; TIGRFAM: Phosphoribosylaminoimidazole carboxylase, ATPase subunit; PFAM: ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type; phosphoribosylaminoimidazole carboxylase, ATPase subunit 2731453 11044575 Acife_2757 Acidithiobacillus ferrivorans SS3 phosphoribosylaminoimidazole carboxylase, ATPase subunit YP_004785159.1 2730320 R 743299 CDS YP_004785160.1 344200834 11043478 complement(2731450..2731947) 1 NC_015942.1 KEGG: afr:AFE_0272 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; PFAM: 1-(5-Phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit 2731947 11043478 Acife_2758 Acidithiobacillus ferrivorans SS3 phosphoribosylaminoimidazole carboxylase, catalytic subunit YP_004785160.1 2731450 R 743299 CDS YP_004785161.1 344200835 11043479 2731989..2732681 1 NC_015942.1 TIGRFAM: tRNA (guanine-N-7) methyltransferase; HAMAP: tRNA (guanine-N(7)-)-methyltransferase; KEGG: afe:Lferr_0448 tRNA (guanine-N(7)-)-methyltransferase; PFAM: tRNA (guanine-N-7) methyltransferase; tRNA (guanine-N(7)-)-methyltransferase 2732681 11043479 Acife_2759 Acidithiobacillus ferrivorans SS3 tRNA (guanine-N(7)-)-methyltransferase YP_004785161.1 2731989 D 743299 CDS YP_004785162.1 344200836 11043481 complement(2732911..2734083) 1 NC_015942.1 KEGG: afr:AFE_0266 glycosyl transferase, group 2 family protein; TIGRFAM: Glycosyl transferase, family 2, hopene-associated, HpnB; PFAM: Glycosyl transferase, family 2; hopene-associated glycosyltransferase HpnB 2734083 11043481 Acife_2761 Acidithiobacillus ferrivorans SS3 hopene-associated glycosyltransferase HpnB YP_004785162.1 2732911 R 743299 CDS YP_004785163.1 344200837 11043482 complement(2734080..2735210) 1 NC_015942.1 KEGG: afr:AFE_0265 twitching motility protein PilT; TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; twitching motility protein 2735210 11043482 Acife_2762 Acidithiobacillus ferrivorans SS3 twitching motility protein YP_004785163.1 2734080 R 743299 CDS YP_004785164.1 344200838 11044576 complement(2735220..2736269) 1 NC_015942.1 TIGRFAM: Pilus retraction protein PilT; PFAM: Type II secretion system protein E; KEGG: afr:AFE_0264 twitching motility protein PilT; SMART: ATPase, AAA+ type, core; twitching motility protein 2736269 11044576 Acife_2763 Acidithiobacillus ferrivorans SS3 twitching motility protein YP_004785164.1 2735220 R 743299 CDS YP_004785165.1 344200839 11043483 2736371..2737042 1 NC_015942.1 KEGG: afr:AFE_0263 conserved hypothetical protein TIGR00044; TIGRFAM: pyridoxal phosphate-dependent enzyme, YBL036C type; PFAM: Alanine racemase, N-terminal; hypothetical protein 2737042 11043483 Acife_2764 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785165.1 2736371 D 743299 CDS YP_004785166.1 344200840 11043484 2737039..2737866 1 NC_015942.1 KEGG: afr:AFE_0262 pyrroline-5-carboxylate reductase; TIGRFAM: Delta 1-pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; pyrroline-5-carboxylate reductase 2737866 11043484 Acife_2765 Acidithiobacillus ferrivorans SS3 pyrroline-5-carboxylate reductase YP_004785166.1 2737039 D 743299 CDS YP_004785167.1 344200841 11043485 2737863..2738141 1 NC_015942.1 PFAM: Protein of unknown function YGGT; KEGG: afr:AFE_0261 YGGT family protein; hypothetical protein 2738141 11043485 Acife_2766 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785167.1 2737863 D 743299 CDS YP_004785168.1 344200842 11044577 2738166..2738516 1 NC_015942.1 TIGRFAM: Conserved hypothetical protein CHP00251; HAMAP: Protein of unknown function DUF167; KEGG: afr:AFE_0260 conserved hypothetical protein TIGR00251, putative; PFAM: Protein of unknown function DUF167; hypothetical protein 2738516 11044577 Acife_2767 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785168.1 2738166 D 743299 CDS YP_004785169.1 344200843 11043486 2738513..2739463 1 NC_015942.1 SMART: Elongator protein 3/MiaB/NifB; TIGRFAM: Biotin synthase; KEGG: afr:AFE_0259 biotin synthase; HAMAP: Biotin synthase; PFAM: Biotin/thiamin synthesis-associated protein; Radical SAM; biotin synthase 2739463 11043486 Acife_2768 Acidithiobacillus ferrivorans SS3 biotin synthase YP_004785169.1 2738513 D 743299 CDS YP_004785170.1 344200844 11043487 complement(2739505..2740074) 1 NC_015942.1 PFAM: Lipid A 3-O-deacylase-related; KEGG: afr:AFE_0258 hypothetical protein; Lipid A 3-O-deacylase-like protein 2740074 11043487 Acife_2769 Acidithiobacillus ferrivorans SS3 Lipid A 3-O-deacylase-like protein YP_004785170.1 2739505 R 743299 CDS YP_004785171.1 344200845 11043488 2740314..2741330 1 NC_015942.1 PFAM: Secretion protein HlyD; KEGG: afr:AFE_0257 secretion protein, HlyD family; secretion protein HlyD family protein 2741330 11043488 Acife_2770 Acidithiobacillus ferrivorans SS3 secretion protein HlyD family protein YP_004785171.1 2740314 D 743299 CDS YP_004785172.1 344200846 11043489 complement(2741340..2742203) 1 NC_015942.1 KEGG: afr:AFE_0256 acetylglutamate kinase; TIGRFAM: Acetylglutamate kinase; PFAM: Aspartate/glutamate/uridylate kinase; acetylglutamate kinase 2742203 11043489 Acife_2771 Acidithiobacillus ferrivorans SS3 acetylglutamate kinase YP_004785172.1 2741340 R 743299 CDS YP_004785173.1 344200847 11043490 complement(2742200..2742847) 1 NC_015942.1 PFAM: Transcriptional regulator, TetR-like, DNA-binding, bacterial/archaeal; KEGG: afr:AFE_0255 transcriptional regulator, TetR family; TetR family transcriptional regulator 2742847 11043490 Acife_2772 Acidithiobacillus ferrivorans SS3 TetR family transcriptional regulator YP_004785173.1 2742200 R 743299 CDS YP_004785174.1 344200848 11043491 2743035..2743973 1 NC_015942.1 KEGG: afr:AFE_0254 hypothetical protein; hypothetical protein 2743973 11043491 Acife_2773 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785174.1 2743035 D 743299 CDS YP_004785175.1 344200849 11043492 2743966..2744277 1 NC_015942.1 KEGG: afe:Lferr_0430 hypothetical protein; hypothetical protein 2744277 11043492 Acife_2774 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785175.1 2743966 D 743299 CDS YP_004785176.1 344200850 11043493 complement(2744357..2744725) 1 NC_015942.1 KEGG: afr:AFE_0253 hypothetical protein; hypothetical protein 2744725 11043493 Acife_2775 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785176.1 2744357 R 743299 CDS YP_004785177.1 344200851 11043494 complement(2744788..2745804) 1 NC_015942.1 PFAM: Oxidoreductase FAD/NAD(P)-binding; Oxidoreductase FAD-binding region; Ferredoxin; KEGG: afr:AFE_0252 CDP-6-deoxy-L-threo-D-glycero-4-hexulose-3-dehydrase reductase, putative; oxidoreductase FAD/NAD(P)-binding domain-containing protein 2745804 11043494 Acife_2776 Acidithiobacillus ferrivorans SS3 oxidoreductase FAD/NAD(P)-binding domain-containing protein YP_004785177.1 2744788 R 743299 CDS YP_004785178.1 344200852 11043495 complement(2745879..2746484) 1 NC_015942.1 SMART: Exonuclease; TIGRFAM: Ribonuclease T; KEGG: afr:AFE_0251 ribonuclease T; HAMAP: Ribonuclease T; PFAM: Exonuclease, RNase T/DNA polymerase III; ribonuclease T 2746484 11043495 Acife_2777 Acidithiobacillus ferrivorans SS3 ribonuclease T YP_004785178.1 2745879 R 743299 CDS YP_004785179.1 344200853 11044578 complement(2746492..2747271) 1 NC_015942.1 KEGG: afr:AFE_0250 hypothetical protein; TIGRFAM: Conserved hypothetical protein CHP00245; PFAM: Conserved hypothetical protein CHP00245; hypothetical protein 2747271 11044578 Acife_2778 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785179.1 2746492 R 743299 CDS YP_004785180.1 344200854 11043496 complement(2747268..2747978) 1 NC_015942.1 KEGG: afr:AFE_0249 arginine-tRNA--protein transferase; HAMAP: Arginine-tRNA-protein transferase, predicted, prokaryotic; PFAM: Arginine-tRNA-protein transferase, C-terminal; Arginine-tRNA-protein transferase, N-terminal; arginyl-tRNA--protein transferase 2747978 11043496 Acife_2779 Acidithiobacillus ferrivorans SS3 arginyl-tRNA--protein transferase YP_004785180.1 2747268 R 743299 CDS YP_004785181.1 344200855 11044579 complement(2747981..2748700) 1 NC_015942.1 TIGRFAM: Leucyl/phenylalanyl-tRNA-protein transferase; HAMAP: Leucyl/phenylalanyl-tRNA-protein transferase; KEGG: afr:AFE_0248 leucyl/phenylalanyl-tRNA--protein transferase; PFAM: Leucyl/phenylalanyl-tRNA-protein transferase; leucyl/phenylalanyl-tRNA--protein transferase 2748700 11044579 Acife_2780 Acidithiobacillus ferrivorans SS3 leucyl/phenylalanyl-tRNA--protein transferase YP_004785181.1 2747981 R 743299 CDS YP_004785182.1 344200856 11044580 complement(2748753..2749649) 1 NC_015942.1 PFAM: Peptidase M48, Ste24p; Peptidase M48B, HtpX peptidase N-terminal; KEGG: afr:AFE_0247 heat shock protein HtpX; peptidase M48 Ste24p 2749649 11044580 Acife_2781 Acidithiobacillus ferrivorans SS3 peptidase M48 Ste24p YP_004785182.1 2748753 R 743299 CDS YP_004785183.1 344200857 11043497 complement(2749767..2750471) 1 NC_015942.1 KEGG: afr:AFE_0246 dethiobiotin synthetase; TIGRFAM: Dethiobiotin synthase; HAMAP: Dethiobiotin synthase; dethiobiotin synthetase 2750471 11043497 Acife_2782 Acidithiobacillus ferrivorans SS3 dethiobiotin synthetase YP_004785183.1 2749767 R 743299 CDS YP_004785184.1 344200858 11043498 complement(2750468..2751346) 1 NC_015942.1 KEGG: afr:AFE_0245 biotin synthesis protein BioC; TIGRFAM: Biotin biosynthesis protein BioC; PFAM: Methyltransferase type 11; biotin biosynthesis protein BioC 2751346 11043498 Acife_2783 Acidithiobacillus ferrivorans SS3 biotin biosynthesis protein BioC YP_004785184.1 2750468 R 743299 CDS YP_004785185.1 344200859 11043499 complement(2751343..2752104) 1 NC_015942.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: afr:AFE_0244 BioH protein; alpha/beta hydrolase fold domain-containing protein 2752104 11043499 Acife_2784 Acidithiobacillus ferrivorans SS3 alpha/beta hydrolase fold domain-containing protein YP_004785185.1 2751343 R 743299 CDS YP_004785186.1 344200860 11043500 complement(2752101..2753270) 1 NC_015942.1 TIGRFAM: 8-amino-7-oxononanoate synthase; HAMAP: 8-amino-7-oxononanoate synthase; KEGG: afr:AFE_0243 8-amino-7-oxononanoate synthase; PFAM: Aminotransferase, class I/II; 8-amino-7-oxononanoate synthase 2753270 11043500 Acife_2785 Acidithiobacillus ferrivorans SS3 8-amino-7-oxononanoate synthase YP_004785186.1 2752101 R 743299 CDS YP_004785187.1 344200861 11043501 2753387..2754100 1 NC_015942.1 PFAM: Phosphoribosyltransferase; KEGG: afr:AFE_0242 competence protein; phosphoribosyltransferase 2754100 11043501 Acife_2786 Acidithiobacillus ferrivorans SS3 phosphoribosyltransferase YP_004785187.1 2753387 D 743299 CDS YP_004785188.1 344200862 11044581 2754108..2754587 1 NC_015942.1 KEGG: afr:AFE_0241 RNA methyltransferase, TrmH family, group 2; TIGRFAM: RNA methyltransferase TrmH, group 2; PFAM: tRNA/rRNA methyltransferase, SpoU; TrmH family RNA methyltransferase 2754587 11044581 Acife_2787 Acidithiobacillus ferrivorans SS3 TrmH family RNA methyltransferase YP_004785188.1 2754108 D 743299 CDS YP_004785189.1 344200863 11043502 2754741..2756849 1 NC_015942.1 PFAM: Sulphatase-modifying factor; Methyltransferase type 11; KEGG: afr:AFE_0240 hypothetical protein; sulfatase-modifying factor protein 2756849 11043502 Acife_2788 Acidithiobacillus ferrivorans SS3 sulfatase-modifying factor protein YP_004785189.1 2754741 D 743299 CDS YP_004785190.1 344200864 11043503 2756846..2758003 1 NC_015942.1 PFAM: Aminotransferase, class I/II; KEGG: afr:AFE_0239 aminotransferase, class II; class I and II aminotransferase 2758003 11043503 Acife_2789 Acidithiobacillus ferrivorans SS3 class I and II aminotransferase YP_004785190.1 2756846 D 743299 CDS YP_004785191.1 344200865 11043504 2758106..2759014 1 NC_015942.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: afr:AFE_0238 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis acyltransferase 2759014 11043504 Acife_2790 Acidithiobacillus ferrivorans SS3 lipid A biosynthesis acyltransferase YP_004785191.1 2758106 D 743299 CDS YP_004785192.1 344200866 11043505 complement(2759020..2760273) 1 NC_015942.1 PFAM: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal; KEGG: afr:AFE_0237 3-deoxy-D-manno-octulosonic-acid transferase; Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein 2760273 11043505 Acife_2791 Acidithiobacillus ferrivorans SS3 Three-deoxy-D-manno-octulosonic-acid transferase domain-containing protein YP_004785192.1 2759020 R 743299 CDS YP_004785193.1 344200867 11044582 complement(2760270..2760950) 1 NC_015942.1 KEGG: afr:AFE_0236 hypothetical protein; protein tyrosine/serine phosphatase 2760950 11044582 Acife_2792 Acidithiobacillus ferrivorans SS3 protein tyrosine/serine phosphatase YP_004785193.1 2760270 R 743299 CDS YP_004785194.1 344200868 11044583 complement(2760953..2761999) 1 NC_015942.1 KEGG: afr:AFE_0235 lipopolysaccharide heptosyltransferase 1; TIGRFAM: Lipopolysaccharide heptosyltransferase I; PFAM: Glycosyl transferase, family 9; lipopolysaccharide heptosyltransferase I 2761999 11044583 Acife_2793 Acidithiobacillus ferrivorans SS3 lipopolysaccharide heptosyltransferase I YP_004785194.1 2760953 R 743299 CDS YP_004785195.1 344200869 11043506 complement(2761996..2762766) 1 NC_015942.1 PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_0234 lipopolysaccharide core biosynthesis glycosyl transferase; family 2 glycosyl transferase 2762766 11043506 Acife_2794 Acidithiobacillus ferrivorans SS3 family 2 glycosyl transferase YP_004785195.1 2761996 R 743299 CDS YP_004785196.1 344200870 11044584 complement(2762766..2763977) 1 NC_015942.1 KEGG: afr:AFE_0232 O-antigen polymerase family protein; O-antigen polymerase family protein 2763977 11044584 Acife_2795 Acidithiobacillus ferrivorans SS3 O-antigen polymerase family protein YP_004785196.1 2762766 R 743299 CDS YP_004785197.1 344200871 11043507 complement(2763974..2765077) 1 NC_015942.1 PFAM: Glycosyl transferase, family 9; KEGG: tal:Thal_0153 glycosyl transferase family 9; glycosyl transferase family protein 2765077 11043507 Acife_2796 Acidithiobacillus ferrivorans SS3 glycosyl transferase family protein YP_004785197.1 2763974 R 743299 CDS YP_004785198.1 344200872 11043508 complement(2765089..2765226) 1 NC_015942.1 hypothetical protein 2765226 11043508 Acife_2797 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785198.1 2765089 R 743299 CDS YP_004785199.1 344200873 11044585 complement(2765286..2766362) 1 NC_015942.1 PFAM: Glycosyl transferase, group 1; KEGG: afe:Lferr_0406 group 1 glycosyl transferase; group 1 glycosyl transferase 2766362 11044585 Acife_2798 Acidithiobacillus ferrivorans SS3 group 1 glycosyl transferase YP_004785199.1 2765286 R 743299 CDS YP_004785200.1 344200874 11043509 complement(2766359..2767075) 1 NC_015942.1 PFAM: Polysaccharide deacetylase; KEGG: afr:AFE_0229 polysaccharide deacetylase family protein; polysaccharide deacetylase 2767075 11043509 Acife_2799 Acidithiobacillus ferrivorans SS3 polysaccharide deacetylase YP_004785200.1 2766359 R 743299 CDS YP_004785201.1 344200875 11043510 complement(2767072..2768034) 1 NC_015942.1 PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_0228 glycosyl transferase, group 2 family protein; family 2 glycosyl transferase 2768034 11043510 Acife_2800 Acidithiobacillus ferrivorans SS3 family 2 glycosyl transferase YP_004785201.1 2767072 R 743299 CDS YP_004785202.1 344200876 11044586 complement(2768035..2769024) 1 NC_015942.1 KEGG: afr:AFE_0227 mutator MutT protein/thiamine-phosphate pyrophosphorylase family protein; TIGRFAM: Mutator MutT protein; PFAM: NUDIX hydrolase domain; Thiamine monophosphate synthase; mutator MutT protein 2769024 11044586 Acife_2801 Acidithiobacillus ferrivorans SS3 mutator MutT protein YP_004785202.1 2768035 R 743299 CDS YP_004785203.1 344200877 11043511 complement(2769024..2770250) 1 NC_015942.1 TIGRFAM: Arginine biosynthesis protein ArgJ; HAMAP: Arginine biosynthesis protein ArgJ; KEGG: afr:AFE_0226 arginine biosynthesis bifunctional protein ArgJ; PFAM: Arginine biosynthesis protein ArgJ; arginine biosynthesis bifunctional protein ArgJ 2770250 11043511 Acife_2802 Acidithiobacillus ferrivorans SS3 arginine biosynthesis bifunctional protein ArgJ YP_004785203.1 2769024 R 743299 CDS YP_004785204.1 344200878 11043512 complement(2770260..2773004) 1 NC_015942.1 TIGRFAM: SecA protein; HAMAP: Protein translocase subunit secA; KEGG: afr:AFE_0225 preprotein translocase, SecA subunit; PFAM: SecA DEAD-like; SecA preprotein cross-linking region; SecA Wing/Scaffold; SEC-C motif; protein translocase subunit secA 2773004 11043512 Acife_2803 Acidithiobacillus ferrivorans SS3 protein translocase subunit secA YP_004785204.1 2770260 R 743299 CDS YP_004785205.1 344200879 11044587 2773088..2773567 1 NC_015942.1 PFAM: Protein of unknown function DUF721; KEGG: afe:Lferr_0400 hypothetical protein; hypothetical protein 2773567 11044587 Acife_2804 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785205.1 2773088 D 743299 CDS YP_004785206.1 344200880 11043513 complement(2773507..2774472) 1 NC_015942.1 TIGRFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; HAMAP: UDP-3-O-acyl N-acetylglucosamine deacetylase; KEGG: afr:AFE_0223 UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-O-acyl N-acetylglucosamine deacetylase; UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase 2774472 11043513 Acife_2805 Acidithiobacillus ferrivorans SS3 UDP-3-O-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase YP_004785206.1 2773507 R 743299 CDS YP_004785207.1 344200881 11043514 2774722..2775342 1 NC_015942.1 PFAM: Glutathione S-transferase, N-terminal; Glutathione S-transferase, C-terminal; KEGG: afr:AFE_0221 stringent starvation protein A; glutathione S-transferase domain-containing protein 2775342 11043514 Acife_2806 Acidithiobacillus ferrivorans SS3 glutathione S-transferase domain-containing protein YP_004785207.1 2774722 D 743299 CDS YP_004785208.1 344200882 11044588 2775344..2777071 1 NC_015942.1 PFAM: AMP-dependent synthetase/ligase; KEGG: afe:Lferr_0397 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2777071 11044588 Acife_2807 Acidithiobacillus ferrivorans SS3 AMP-dependent synthetase and ligase YP_004785208.1 2775344 D 743299 CDS YP_004785209.1 344200883 11043515 2777081..2778451 1 NC_015942.1 PFAM: Polynucleotide adenylyltransferase region; KEGG: afr:AFE_0218 polyA polymerase family protein; polynucleotide adenylyltransferase protein 2778451 11043515 Acife_2808 Acidithiobacillus ferrivorans SS3 polynucleotide adenylyltransferase protein YP_004785209.1 2777081 D 743299 CDS YP_004785210.1 344200884 11043516 complement(2778396..2778662) 1 NC_015942.1 KEGG: afr:AFE_0219 hypothetical protein; hypothetical protein 2778662 11043516 Acife_2809 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785210.1 2778396 R 743299 CDS YP_004785211.1 344200885 11043518 2779475..2779930 1 NC_015942.1 TIGRFAM: MraZ; HAMAP: MraZ; KEGG: afr:AFE_0215 MraZ protein; PFAM: MraZ domain; protein mraZ 2779930 11043518 Acife_2810 Acidithiobacillus ferrivorans SS3 protein mraZ YP_004785211.1 2779475 D 743299 CDS YP_004785212.1 344200886 11043519 2779927..2780892 1 NC_015942.1 TIGRFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; HAMAP: S-adenosyl-L-methionine-dependent methyltransferase, MraW; KEGG: afr:AFE_0214 S-adenosyl-methyltransferase MraW; PFAM: S-adenosyl-L-methionine-dependent methyltransferase, MraW; ribosomal RNA small subunit methyltransferase H 2780892 11043519 Acife_2811 Acidithiobacillus ferrivorans SS3 ribosomal RNA small subunit methyltransferase H YP_004785212.1 2779927 D 743299 CDS YP_004785213.1 344200887 11043520 2780882..2781145 1 NC_015942.1 KEGG: afr:AFE_0213 cell division protein FtsL; TIGRFAM: Cell division protein, FtsL -like; PFAM: Cell division protein FtsL; cell division protein FtsL 2781145 11043520 Acife_2812 Acidithiobacillus ferrivorans SS3 cell division protein FtsL YP_004785213.1 2780882 D 743299 CDS YP_004785214.1 344200888 11044589 2781142..2782926 1 NC_015942.1 PFAM: Penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; KEGG: afr:AFE_0212 peptidoglycan synthetase FtsI; penicillin-binding protein transpeptidase 2782926 11044589 Acife_2813 Acidithiobacillus ferrivorans SS3 penicillin-binding protein transpeptidase YP_004785214.1 2781142 D 743299 CDS YP_004785215.1 344200889 11043521 2782913..2784361 1 NC_015942.1 TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; HAMAP: UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase; KEGG: afr:AFE_0211 UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase 2784361 11043521 Acife_2814 Acidithiobacillus ferrivorans SS3 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase YP_004785215.1 2782913 D 743299 CDS YP_004785216.1 344200890 11044590 2784358..2785710 1 NC_015942.1 KEGG: afr:AFE_0210 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase; TIGRFAM: UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase; PFAM: Mur ligase, central; Mur ligase, N-terminal; Mur ligase, C-terminal; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase 2785710 11044590 Acife_2815 Acidithiobacillus ferrivorans SS3 UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate/D-alanyl-D-alanyl ligase YP_004785216.1 2784358 D 743299 CDS YP_004785217.1 344200891 11043522 2785710..2786792 1 NC_015942.1 TIGRFAM: Phospho-N-acetylmuramoyl-pentapeptide transferase; HAMAP: Phospho-N-acetylmuramoyl-pentapeptide transferase; KEGG: afr:AFE_0209 phospho-N-acetylmuramoyl-pentapeptide-transferase; PFAM: Glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; phospho-N-acetylmuramoyl-pentapeptide- transferase 2786792 11043522 Acife_2816 Acidithiobacillus ferrivorans SS3 phospho-N-acetylmuramoyl-pentapeptide- transferase YP_004785217.1 2785710 D 743299 CDS YP_004785218.1 344200892 11043523 2786794..2788140 1 NC_015942.1 TIGRFAM: UDP-N-acetylmuramoylalanine-D-glutamate ligase; HAMAP: UDP-N-acetylmuramoylalanine-D-glutamate ligase; KEGG: afr:AFE_0208 UDP-N-acetylmuramoylalanine--D-glutamate ligase; PFAM: Mur ligase, central; Mur ligase, C-terminal; UDP-N-acetylmuramoylalanine--D-glutamate ligase 2788140 11043523 Acife_2817 Acidithiobacillus ferrivorans SS3 UDP-N-acetylmuramoylalanine--D-glutamate ligase YP_004785218.1 2786794 D 743299 CDS YP_004785219.1 344200893 11044591 2788137..2789309 1 NC_015942.1 KEGG: afr:AFE_0207 cell division protein FtsW; TIGRFAM: Cell division protein FtsW; PFAM: Cell cycle protein; cell division protein FtsW 2789309 11044591 Acife_2818 Acidithiobacillus ferrivorans SS3 cell division protein FtsW YP_004785219.1 2788137 D 743299 CDS YP_004785220.1 344200894 11043524 2789302..2790384 1 NC_015942.1 TIGRFAM: N-acetylglucosaminyltransferase, MurG; HAMAP: UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; KEGG: afr:AFE_0206 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; PFAM: Glycosyl transferase, family 28; Glycosyl transferase, family 28, C-terminal; UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase 2790384 11043524 Acife_2819 Acidithiobacillus ferrivorans SS3 UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase YP_004785220.1 2789302 D 743299 CDS YP_004785221.1 344200895 11043525 2790377..2791771 1 NC_015942.1 TIGRFAM: UDP-N-acetylmuramate-alanine ligase; HAMAP: UDP-N-acetylmuramate-alanine ligase; KEGG: afr:AFE_0205 UDP-N-acetylmuramate--alanine ligase; PFAM: Mur ligase, N-terminal; Mur ligase, central; Mur ligase, C-terminal; UDP-N-acetylmuramate--L-alanine ligase 2791771 11043525 Acife_2820 Acidithiobacillus ferrivorans SS3 UDP-N-acetylmuramate--L-alanine ligase YP_004785221.1 2790377 D 743299 CDS YP_004785222.1 344200896 11044592 2791768..2792655 1 NC_015942.1 TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; HAMAP: UDP-N-acetylenolpyruvoylglucosamine reductase; KEGG: afr:AFE_0204 UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal; FAD linked oxidase, N-terminal; UDP-N-acetylenolpyruvoylglucosamine reductase 2792655 11044592 Acife_2821 Acidithiobacillus ferrivorans SS3 UDP-N-acetylenolpyruvoylglucosamine reductase YP_004785222.1 2791768 D 743299 CDS YP_004785223.1 344200897 11043526 2792648..2793574 1 NC_015942.1 TIGRFAM: D-alanine--D-alanine ligase; HAMAP: D-alanine--D-alanine ligase; KEGG: afr:AFE_0203 D-alanine--D-alanine ligase; PFAM: D-alanine--D-alanine ligase, C-terminal; D-alanine--D-alanine ligase, N-terminal; D-alanine--D-alanine ligase 2793574 11043526 Acife_2822 Acidithiobacillus ferrivorans SS3 D-alanine--D-alanine ligase YP_004785223.1 2792648 D 743299 CDS YP_004785224.1 344200898 11043527 2793567..2794406 1 NC_015942.1 PFAM: Cell division protein FtsQ; Polypeptide-transport-associated, FtsQ-type; KEGG: afr:AFE_0202 cell division protein FtsQ; cell division protein FtsQ 2794406 11043527 Acife_2823 Acidithiobacillus ferrivorans SS3 cell division protein FtsQ YP_004785224.1 2793567 D 743299 CDS YP_004785225.1 344200899 11043528 2794437..2795705 1 NC_015942.1 KEGG: afr:AFE_0201 cell division protein FtsA; TIGRFAM: Cell division protein family FtsA; PFAM: Cell division protein FtsA domain; cell division protein FtsA 2795705 11043528 Acife_2824 Acidithiobacillus ferrivorans SS3 cell division protein FtsA YP_004785225.1 2794437 D 743299 CDS YP_004785226.1 344200900 11044593 2795764..2796927 1 NC_015942.1 KEGG: afr:AFE_0200 cell division protein FtsZ; TIGRFAM: Cell division protein FtsZ, N-terminal; PFAM: Tubulin/FtsZ, GTPase domain; Tubulin/FtsZ, 2-layer sandwich domain; cell division protein FtsZ 2796927 11044593 Acife_2825 Acidithiobacillus ferrivorans SS3 cell division protein FtsZ YP_004785226.1 2795764 D 743299 CDS YP_004785227.1 344200901 11043529 complement(2796944..2797369) 1 NC_015942.1 KEGG: tkm:TK90_0226 leucine-rich repeat-containing protein; leucine-rich repeat-containing protein 2797369 11043529 Acife_2826 Acidithiobacillus ferrivorans SS3 leucine-rich repeat-containing protein YP_004785227.1 2796944 R 743299 CDS YP_004785228.1 344200902 11043530 complement(2797423..2798280) 1 NC_015942.1 KEGG: afr:AFE_0199 hypothetical protein; hypothetical protein 2798280 11043530 Acife_2827 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785228.1 2797423 R 743299 CDS YP_004785229.1 344200903 11044594 2798553..2799014 1 NC_015942.1 TIGRFAM: Dehydroquinase, class II; HAMAP: Dehydroquinase, class II; KEGG: afr:AFE_0197 3-dehydroquinate dehydratase; PFAM: Dehydroquinase, class II; 3-dehydroquinate dehydratase 2799014 11044594 Acife_2828 Acidithiobacillus ferrivorans SS3 3-dehydroquinate dehydratase YP_004785229.1 2798553 D 743299 CDS YP_004785230.1 344200904 11043531 2799034..2799510 1 NC_015942.1 KEGG: afr:AFE_0196 acetyl-CoA carboxylase, biotin carboxyl carrier protein; TIGRFAM: Acetyl-CoA biotin carboxyl carrier; PFAM: Biotin/lipoyl attachment; acetyl-CoA carboxylase, biotin carboxyl carrier protein 2799510 11043531 Acife_2829 Acidithiobacillus ferrivorans SS3 acetyl-CoA carboxylase, biotin carboxyl carrier protein YP_004785230.1 2799034 D 743299 CDS YP_004785231.1 344200905 11043532 2799503..2800849 1 NC_015942.1 KEGG: afr:AFE_0195 acetyl-CoA carboxylase, biotin carboxylase; TIGRFAM: Acetyl-CoA carboxylase, biotin carboxylase; PFAM: Carbamoyl phosphate synthetase, large subunit, ATP-binding; Carbamoyl phosphate synthase, large subunit, N-terminal; Biotin carboxylase, C-terminal; acetyl-CoA carboxylase, biotin carboxylase 2800849 11043532 Acife_2830 Acidithiobacillus ferrivorans SS3 acetyl-CoA carboxylase, biotin carboxylase YP_004785231.1 2799503 D 743299 CDS YP_004785232.1 344200906 11043533 2800846..2801724 1 NC_015942.1 TIGRFAM: Ribosomal protein L11 methyltransferase; HAMAP: Ribosomal protein L11 methyltransferase; KEGG: afr:AFE_0194 ribosomal protein L11 methyltransferase; PFAM: Ribosomal L11 methyltransferase; 50S ribosomal protein L11 methyltransferase 2801724 11043533 Acife_2831 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L11 methyltransferase YP_004785232.1 2800846 D 743299 CDS YP_004785233.1 344200907 11044595 2801727..2802359 1 NC_015942.1 KEGG: afr:AFE_0193 MJ0042 family finger-like domain protein; hypothetical protein 2802359 11044595 Acife_2832 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785233.1 2801727 D 743299 CDS YP_004785234.1 344200908 11043534 2802372..2802614 1 NC_015942.1 PFAM: Helix-turn-helix, Fis-type; KEGG: afr:AFE_0191 transcriptional regulator, Fis family; Fis family transcriptional regulator 2802614 11043534 Acife_2833 Acidithiobacillus ferrivorans SS3 Fis family transcriptional regulator YP_004785234.1 2802372 D 743299 CDS YP_004785235.1 344200909 11043535 complement(2802596..2803261) 1 NC_015942.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: afr:AFE_0192 transglycosylase, putative; lytic transglycosylase 2803261 11043535 Acife_2834 Acidithiobacillus ferrivorans SS3 lytic transglycosylase YP_004785235.1 2802596 R 743299 CDS YP_004785236.1 344200910 11043536 complement(2803258..2803674) 1 NC_015942.1 PFAM: Stringent starvation protein B; KEGG: afr:AFE_0190 stringent starvation protein B; Stringent starvation protein B 2803674 11043536 Acife_2835 Acidithiobacillus ferrivorans SS3 Stringent starvation protein B YP_004785236.1 2803258 R 743299 CDS YP_004785237.1 344200911 11043537 2804131..2804913 1 NC_015942.1 PFAM: Polysaccharide deacetylase; KEGG: afr:AFE_0787 polysaccharide deacetylase family protein; polysaccharide deacetylase 2804913 11043537 Acife_2836 Acidithiobacillus ferrivorans SS3 polysaccharide deacetylase YP_004785237.1 2804131 D 743299 CDS YP_004785238.1 344200912 11043538 2804961..2806283 1 NC_015942.1 PFAM: Monooxygenase, FAD-binding; KEGG: afr:AFE_0788 non-heme halogenase, putative; FAD-binding monooxygenase 2806283 11043538 Acife_2837 Acidithiobacillus ferrivorans SS3 FAD-binding monooxygenase YP_004785238.1 2804961 D 743299 CDS YP_004785239.1 344200913 11043539 2806286..2807350 1 NC_015942.1 KEGG: afr:AFE_0789 dioxygenase, putative; dioxygenase 2807350 11043539 Acife_2838 Acidithiobacillus ferrivorans SS3 dioxygenase YP_004785239.1 2806286 D 743299 CDS YP_004785240.1 344200914 11044596 2807634..2808062 1 NC_015942.1 KEGG: xac:XAC3351 hypothetical protein; hypothetical protein 2808062 11044596 Acife_2839 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785240.1 2807634 D 743299 CDS YP_004785241.1 344200915 11043540 2808314..2809093 1 NC_015942.1 KEGG: afr:AFE_0790 acyltransferase, putative; PFAM: Phospholipid/glycerol acyltransferase; SMART: Phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2809093 11043540 Acife_2840 Acidithiobacillus ferrivorans SS3 phospholipid/glycerol acyltransferase YP_004785241.1 2808314 D 743299 CDS YP_004785242.1 344200916 11043541 2809093..2809857 1 NC_015942.1 PFAM: Glycosyl transferase, family 2; KEGG: afr:AFE_0792 glycosyl transferase, group 2; family 2 glycosyl transferase 2809857 11043541 Acife_2841 Acidithiobacillus ferrivorans SS3 family 2 glycosyl transferase YP_004785242.1 2809093 D 743299 CDS YP_004785243.1 344200917 11044597 complement(2809887..2811185) 1 NC_015942.1 PFAM: Cation/H+ exchanger; KEGG: afr:AFE_0791 Na+/H+ antiporter, putative; sodium/hydrogen exchanger 2811185 11044597 Acife_2842 Acidithiobacillus ferrivorans SS3 sodium/hydrogen exchanger YP_004785243.1 2809887 R 743299 CDS YP_004785244.1 344200918 11043542 complement(2811202..2811924) 1 NC_015942.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_0793 3-ketoacyl-(acyl-carrier-protein) reductase; short-chain dehydrogenase/reductase SDR 2811924 11043542 Acife_2843 Acidithiobacillus ferrivorans SS3 short-chain dehydrogenase/reductase SDR YP_004785244.1 2811202 R 743299 CDS YP_004785245.1 344200919 11043543 complement(2811917..2812375) 1 NC_015942.1 KEGG: afr:AFE_0794 hypothetical protein; hypothetical protein 2812375 11043543 Acife_2844 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785245.1 2811917 R 743299 CDS YP_004785246.1 344200920 11044598 complement(2812366..2813175) 1 NC_015942.1 KEGG: afr:AFE_0795 hypothetical protein; hypothetical protein 2813175 11044598 Acife_2845 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785246.1 2812366 R 743299 CDS YP_004785247.1 344200921 11043544 complement(2813193..2814386) 1 NC_015942.1 PFAM: Beta-ketoacyl synthase, C-terminal; Beta-ketoacyl synthase, N-terminal; KEGG: afr:AFE_0796 3-oxoacyl-(acyl carrier protein) synthase I; beta-ketoacyl synthase 2814386 11043544 Acife_2846 Acidithiobacillus ferrivorans SS3 beta-ketoacyl synthase YP_004785247.1 2813193 R 743299 CDS YP_004785248.1 344200922 11043545 2814702..2814965 1 NC_015942.1 KEGG: afr:AFE_0797 acyl carrier protein, putative; acyl carrier protein 2814965 11043545 Acife_2847 Acidithiobacillus ferrivorans SS3 acyl carrier protein YP_004785248.1 2814702 D 743299 CDS YP_004785249.1 344200923 11043546 complement(2814999..2817365) 1 NC_015942.1 KEGG: afr:AFE_0798 hypothetical protein; hypothetical protein 2817365 11043546 Acife_2848 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785249.1 2814999 R 743299 CDS YP_004785250.1 344200924 11043547 complement(2817362..2818042) 1 NC_015942.1 KEGG: afe:Lferr_0942 putative transmembrane protein; hypothetical protein 2818042 11043547 Acife_2849 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785250.1 2817362 R 743299 CDS YP_004785251.1 344200925 11043548 complement(2818039..2818998) 1 NC_015942.1 PFAM: Bacterial lipid A biosynthesis acyltransferase; KEGG: afe:Lferr_0943 lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase 2818998 11043548 Acife_2850 Acidithiobacillus ferrivorans SS3 lipid A biosynthesis acyltransferase YP_004785251.1 2818039 R 743299 CDS YP_004785252.1 344200926 11044599 complement(2819302..2820663) 1 NC_015942.1 PFAM: AMP-dependent synthetase/ligase; KEGG: afr:AFE_0802 AMP-binding protein; AMP-dependent synthetase and ligase 2820663 11044599 Acife_2852 Acidithiobacillus ferrivorans SS3 AMP-dependent synthetase and ligase YP_004785252.1 2819302 R 743299 CDS YP_004785253.1 344200927 11043550 complement(2820711..2821424) 1 NC_015942.1 KEGG: afr:AFE_0803 hypothetical protein; hypothetical protein 2821424 11043550 Acife_2853 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785253.1 2820711 R 743299 CDS YP_004785254.1 344200928 11043551 complement(2821532..2821852) 1 NC_015942.1 KEGG: afr:AFE_0804 hypothetical protein; hypothetical protein 2821852 11043551 Acife_2854 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785254.1 2821532 R 743299 CDS YP_004785255.1 344200929 11043552 complement(2821942..2822952) 1 NC_015942.1 KEGG: afr:AFE_0189 fructose-1,6-bisphosphatase; HAMAP: Fructose-1,6-bisphosphatase; PFAM: Fructose-1,6-bisphosphatase; fructose-1,6-bisphosphatase class 1 2822952 11043552 Acife_2855 Acidithiobacillus ferrivorans SS3 fructose-1,6-bisphosphatase class 1 YP_004785255.1 2821942 R 743299 CDS YP_004785256.1 344200930 11043553 complement(2822986..2823738) 1 NC_015942.1 PFAM: Protein of unknown function DUF1342; KEGG: afr:AFE_0188 hypothetical protein; hypothetical protein 2823738 11043553 Acife_2856 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785256.1 2822986 R 743299 CDS YP_004785257.1 344200931 11044600 complement(2823855..2824457) 1 NC_015942.1 KEGG: afr:AFE_0187 dephospho-CoA kinase; TIGRFAM: Dephospho-CoA kinase; HAMAP: Dephospho-CoA kinase; Dephospho-CoA kinase 2824457 11044600 Acife_2857 Acidithiobacillus ferrivorans SS3 Dephospho-CoA kinase YP_004785257.1 2823855 R 743299 CDS YP_004785258.1 344200932 11043554 complement(2824458..2825243) 1 NC_015942.1 PFAM: Peptidase A24A, N-terminal; Peptidase A24A, prepilin type IV; KEGG: afr:AFE_0186 type IV pilus prepilin peptidase PilD; peptidase A24A domain-containing protein 2825243 11043554 Acife_2858 Acidithiobacillus ferrivorans SS3 peptidase A24A domain-containing protein YP_004785258.1 2824458 R 743299 CDS YP_004785259.1 344200933 11043555 complement(2825255..2826613) 1 NC_015942.1 KEGG: afe:Lferr_0364 two component sigma-54 specific fis family transcriptional regulator; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; Helix-turn-helix, Fis-type; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; two component sigma-54 specific Fis family transcriptional regulator 2826613 11043555 Acife_2859 Acidithiobacillus ferrivorans SS3 two component sigma-54 specific Fis family transcriptional regulator YP_004785259.1 2825255 R 743299 CDS YP_004785260.1 344200934 11044601 complement(2826610..2828208) 1 NC_015942.1 KEGG: afr:AFE_0184 sensor protein PilS, putative; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; PAS fold; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; multi-sensor signal transduction histidine kinase 2828208 11044601 Acife_2860 Acidithiobacillus ferrivorans SS3 multi-sensor signal transduction histidine kinase YP_004785260.1 2826610 R 743299 CDS YP_004785261.1 344200935 11043556 complement(2828332..2830041) 1 NC_015942.1 TIGRFAM: ATPase, type IV, pilus assembly, PilB; PFAM: Type II secretion system protein E; General secretory system II, protein E, N-terminal; KEGG: afr:AFE_0183 type IV pilus assembly protein; SMART: ATPase, AAA+ type, core; type IV-A pilus assembly ATPase PilB 2830041 11043556 Acife_2861 Acidithiobacillus ferrivorans SS3 type IV-A pilus assembly ATPase PilB YP_004785261.1 2828332 R 743299 CDS YP_004785262.1 344200936 11043557 complement(2830011..2830910) 1 NC_015942.1 TIGRFAM: Quinate/shikimate 5-dehydrogenase; HAMAP: Shikimate dehydrogenase; KEGG: afr:AFE_0182 shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding, N-terminal; Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase; shikimate dehydrogenase 2830910 11043557 Acife_2862 Acidithiobacillus ferrivorans SS3 shikimate dehydrogenase YP_004785262.1 2830011 R 743299 CDS YP_004785263.1 344200937 11044602 complement(2830888..2832069) 1 NC_015942.1 KEGG: afr:AFE_0181 anhydro-N-acetylmuramic acid kinase; HAMAP: Anhydro-N-acetylmuramic acid kinase; PFAM: Anhydro-N-acetylmuramic acid kinase; Anhydro-N-acetylmuramic acid kinase 2832069 11044602 Acife_2863 Acidithiobacillus ferrivorans SS3 Anhydro-N-acetylmuramic acid kinase YP_004785263.1 2830888 R 743299 CDS YP_004785264.1 344200938 11043558 complement(2832119..2832607) 1 NC_015942.1 PFAM: Peptidyl-prolyl cis-trans isomerase, FKBP-type; KEGG: afr:AFE_0180 peptidyl-prolyl cis-trans isomerase, FKBP-type; FKBP-type peptidylprolyl isomerase 2832607 11043558 Acife_2864 Acidithiobacillus ferrivorans SS3 FKBP-type peptidylprolyl isomerase YP_004785264.1 2832119 R 743299 CDS YP_004785265.1 344200939 11043559 complement(2832670..2833683) 1 NC_015942.1 TIGRFAM: Ferrochelatase; HAMAP: Ferrochelatase; KEGG: afr:AFE_0179 ferrochelatase; PFAM: Ferrochelatase; ferrochelatase 2833683 11043559 Acife_2865 Acidithiobacillus ferrivorans SS3 ferrochelatase YP_004785265.1 2832670 R 743299 CDS YP_004785266.1 344200940 11044603 complement(2833680..2834453) 1 NC_015942.1 KEGG: afr:AFE_0178 exodeoxyribonuclease III; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 2834453 11044603 Acife_2866 Acidithiobacillus ferrivorans SS3 exodeoxyribonuclease III Xth YP_004785266.1 2833680 R 743299 CDS YP_004785267.1 344200941 11043560 complement(2834459..2835061) 1 NC_015942.1 PFAM: Glutathione S-transferase, N-terminal; KEGG: afr:AFE_0177 glutathione S-transferase family protein; glutathione S-transferase domain-containing protein 2835061 11043560 Acife_2867 Acidithiobacillus ferrivorans SS3 glutathione S-transferase domain-containing protein YP_004785267.1 2834459 R 743299 CDS YP_004785268.1 344200942 11043561 2835154..2835990 1 NC_015942.1 PFAM: Protein of unknown function DUF519; KEGG: afr:AFE_0176 hypothetical protein; hypothetical protein 2835990 11043561 Acife_2868 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785268.1 2835154 D 743299 CDS YP_004785269.1 344200943 11044604 2836065..2836349 1 NC_015942.1 KEGG: afr:AFE_0175 hypothetical protein; hypothetical protein 2836349 11044604 Acife_2869 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785269.1 2836065 D 743299 CDS YP_004785270.1 344200944 11043562 2836362..2837123 1 NC_015942.1 KEGG: afr:AFE_0174 exodeoxyribonuclease III; TIGRFAM: Exodeoxyribonuclease III xth; AP endonuclease, family 1; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth 2837123 11043562 Acife_2870 Acidithiobacillus ferrivorans SS3 exodeoxyribonuclease III Xth YP_004785270.1 2836362 D 743299 CDS YP_004785271.1 344200945 11043563 2837124..2838035 1 NC_015942.1 KEGG: afr:AFE_0173 ribosomal protein L3 N-methyltransferase; TIGRFAM: Ribosomal protein L3-specific, glutamine-N5-methyltransferase; Modification methylase HemK; PFAM: Methyltransferase small; protein-(glutamine-N5) methyltransferase, 50S ribosomal protein L3-specific 2838035 11043563 Acife_2871 Acidithiobacillus ferrivorans SS3 protein-(glutamine-N5) methyltransferase, 50S ribosomal protein L3-specific YP_004785271.1 2837124 D 743299 CDS YP_004785272.1 344200946 11043564 2838154..2839716 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_0171 drug resistance transporter,putative, EmrB/QacA subfamily; major facilitator superfamily protein 2839716 11043564 Acife_2872 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004785272.1 2838154 D 743299 CDS YP_004785273.1 344200947 11044605 complement(2839638..2840561) 1 NC_015942.1 PFAM: Mechanosensitive ion channel MscS; KEGG: sde:Sde_3910 hypothetical protein; mechanosensitive ion channel MscS 2840561 11044605 Acife_2873 Acidithiobacillus ferrivorans SS3 mechanosensitive ion channel MscS YP_004785273.1 2839638 R 743299 CDS YP_004785274.1 344200948 11043565 2840665..2842404 1 NC_015942.1 TIGRFAM: Arginyl-tRNA synthetase, class Ic; HAMAP: Arginyl-tRNA synthetase, class Ic; KEGG: afr:AFE_0170 arginyl-tRNA synthetase; arginyl-tRNA synthetase 2842404 11043565 Acife_2874 Acidithiobacillus ferrivorans SS3 arginyl-tRNA synthetase YP_004785274.1 2840665 D 743299 CDS YP_004785275.1 344200949 11043566 2842411..2843241 1 NC_015942.1 PFAM: Sporulation/cell division region, bacteria; KEGG: afr:AFE_0168 hypothetical protein; sporulation domain-containing protein 2843241 11043566 Acife_2875 Acidithiobacillus ferrivorans SS3 sporulation domain-containing protein YP_004785275.1 2842411 D 743299 CDS YP_004785276.1 344200950 11044606 complement(2843207..2843674) 1 NC_015942.1 PFAM: Protein of unknown function DUF1790; KEGG: afr:AFE_0169 hypothetical protein; hypothetical protein 2843674 11044606 Acife_2876 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785276.1 2843207 R 743299 CDS YP_004785277.1 344200951 11043567 complement(2843671..2844477) 1 NC_015942.1 SMART: Ribosomal RNA adenine methylase transferase, N-terminal; TIGRFAM: Ribosomal RNA adenine dimethylase; KEGG: afe:Lferr_0346 dimethyladenosine transferase; HAMAP: Ribosomal RNA adenine dimethylase; PFAM: Ribosomal RNA adenine methylase transferase; ribosomal RNA small subunit methyltransferase A 2844477 11043567 Acife_2877 Acidithiobacillus ferrivorans SS3 ribosomal RNA small subunit methyltransferase A YP_004785277.1 2843671 R 743299 CDS YP_004785278.1 344200952 11043568 2844540..2845094 1 NC_015942.1 KEGG: afr:AFE_0166 HNH endonuclease domain protein; PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease 2845094 11043568 Acife_2878 Acidithiobacillus ferrivorans SS3 HNH endonuclease YP_004785278.1 2844540 D 743299 CDS YP_004785279.1 344200953 11044607 complement(2845115..2846116) 1 NC_015942.1 TIGRFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; HAMAP: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; KEGG: afr:AFE_0165 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate (active vitamin B6) biosynthesis PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase 2846116 11044607 Acife_2879 Acidithiobacillus ferrivorans SS3 4-hydroxythreonine-4-phosphate dehydrogenase YP_004785279.1 2845115 R 743299 CDS YP_004785280.1 344200954 11043569 complement(2846113..2846376) 1 NC_015942.1 KEGG: afr:AFE_0164 S4 domain protein; PFAM: RNA-binding S4; SMART: RNA-binding S4; RNA-binding S4 domain-containing protein 2846376 11043569 Acife_2880 Acidithiobacillus ferrivorans SS3 RNA-binding S4 domain-containing protein YP_004785280.1 2846113 R 743299 CDS YP_004785281.1 344200955 11043570 complement(2846379..2847299) 1 NC_015942.1 KEGG: afr:AFE_0163 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 2847299 11043570 Acife_2881 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004785281.1 2846379 R 743299 CDS YP_004785282.1 344200956 11044608 complement(2847292..2847579) 1 NC_015942.1 KEGG: afe:Lferr_0341 hypothetical protein; hypothetical protein 2847579 11044608 Acife_2882 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785282.1 2847292 R 743299 CDS YP_004785283.1 344200957 11043571 complement(2847606..2848235) 1 NC_015942.1 PFAM: Toluene tolerance; KEGG: afr:AFE_0161 toluene tolerance protein, putative; toluene tolerance family protein 2848235 11043571 Acife_2883 Acidithiobacillus ferrivorans SS3 toluene tolerance family protein YP_004785283.1 2847606 R 743299 CDS YP_004785284.1 344200958 11043572 complement(2848248..2848709) 1 NC_015942.1 PFAM: Mammalian cell entry related; KEGG: afr:AFE_0160 mce-related protein; mammalian cell entry related domain-containing protein 2848709 11043572 Acife_2884 Acidithiobacillus ferrivorans SS3 mammalian cell entry related domain-containing protein YP_004785284.1 2848248 R 743299 CDS YP_004785285.1 344200959 11043573 complement(2848724..2849506) 1 NC_015942.1 KEGG: afr:AFE_0159 toluene tolerance protein Ttg2B, putative; TIGRFAM: Protein of unknown function DUF140; PFAM: Protein of unknown function DUF140; hypothetical protein 2849506 11043573 Acife_2885 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785285.1 2848724 R 743299 CDS YP_004785286.1 344200960 11043574 complement(2849510..2850334) 1 NC_015942.1 KEGG: afr:AFE_0158 toluene ABC transporter, ATP-binding protein, putative; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 2850334 11043574 Acife_2886 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004785286.1 2849510 R 743299 CDS YP_004785287.1 344200961 11043575 2850645..2851046 1 NC_015942.1 TIGRFAM: S-adenosylmethionine decarboxylase proenzyme; HAMAP: S-adenosylmethionine decarboxylase proenzyme; KEGG: afr:AFE_0157 S-adenosylmethionine decarboxylase proenzyme; PFAM: S-adenosylmethionine decarboxylase, bacterial/archaeal; S-adenosylmethionine decarboxylase proenzyme 2851046 11043575 Acife_2887 Acidithiobacillus ferrivorans SS3 S-adenosylmethionine decarboxylase proenzyme YP_004785287.1 2850645 D 743299 CDS YP_004785288.1 344200962 11043576 2851167..2852003 1 NC_015942.1 TIGRFAM: Spermine synthase; HAMAP: Spermidine synthase; KEGG: afr:AFE_0156 spermidine synthase; PFAM: Spermine synthase; spermidine synthase 2852003 11043576 Acife_2888 Acidithiobacillus ferrivorans SS3 spermidine synthase YP_004785288.1 2851167 D 743299 CDS YP_004785289.1 344200963 11043577 complement(2852031..2852636) 1 NC_015942.1 PFAM: Phosphoglycerate mutase; KEGG: afr:AFE_0155 phosphoglycerate mutase family protein; phosphoglycerate mutase 2852636 11043577 Acife_2889 Acidithiobacillus ferrivorans SS3 phosphoglycerate mutase YP_004785289.1 2852031 R 743299 CDS YP_004785290.1 344200964 11043578 complement(2852833..2854212) 1 NC_015942.1 KEGG: afr:AFE_2955 sigma-54 dependent DNA-binding response regulator, putative; PFAM: RNA polymerase sigma factor 54, interaction; Signal transduction response regulator, receiver region; SMART: Signal transduction response regulator, receiver region; ATPase, AAA+ type, core; putative two component, sigma54 specific, transcriptional regulator 2854212 11043578 Acife_2890 Acidithiobacillus ferrivorans SS3 putative two component, sigma54 specific, transcriptional regulator YP_004785290.1 2852833 R 743299 CDS YP_004785291.1 344200965 11044609 complement(2854218..2854538) 1 NC_015942.1 KEGG: afr:AFE_2956 hypothetical protein; hypothetical protein 2854538 11044609 Acife_2891 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785291.1 2854218 R 743299 CDS YP_004785292.1 344200966 11043579 complement(2854519..2856159) 1 NC_015942.1 KEGG: afe:Lferr_2570 integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; SMART: ATP-binding region, ATPase-like; Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor region; HAMP linker domain; integral membrane sensor signal transduction histidine kinase 2856159 11043579 Acife_2892 Acidithiobacillus ferrivorans SS3 integral membrane sensor signal transduction histidine kinase YP_004785292.1 2854519 R 743299 CDS YP_004785293.1 344200967 11043580 complement(2856159..2856431) 1 NC_015942.1 KEGG: afr:AFE_2959 hypothetical protein; HAMAP: Fe(II) trafficking protein YggX; PFAM: Fe(II) trafficking protein YggX; Fe(2+)-trafficking protein 2856431 11043580 Acife_2893 Acidithiobacillus ferrivorans SS3 Fe(2+)-trafficking protein YP_004785293.1 2856159 R 743299 CDS YP_004785294.1 344200968 11043581 complement(2856563..2857672) 1 NC_015942.1 TIGRFAM: A/G-specific adenine glycosylase MutY, bacterial form; PFAM: HhH-GPD domain; Endonuclease III-like, iron-sulphur cluster loop motif; KEGG: afr:AFE_3015 A/G-specific adenine glycosylase; SMART: HhH-GPD domain; A/G-specific adenine glycosylase 2857672 11043581 Acife_2894 Acidithiobacillus ferrivorans SS3 A/G-specific adenine glycosylase YP_004785294.1 2856563 R 743299 CDS YP_004785295.1 344200969 11043582 complement(2857669..2858913) 1 NC_015942.1 KEGG: afr:AFE_3017 hypothetical protein; hypothetical protein 2858913 11043582 Acife_2895 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785295.1 2857669 R 743299 CDS YP_004785296.1 344200970 11043583 complement(2858933..2860645) 1 NC_015942.1 KEGG: afr:AFE_3018 phosphoenolpyruvate-protein phosphotransferase; TIGRFAM: Phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilising enzyme; Phosphotransferase system, PEP-utilising enzyme, N-terminal; PEP-utilising enzyme, mobile region; phosphoenolpyruvate-protein phosphotransferase 2860645 11043583 Acife_2896 Acidithiobacillus ferrivorans SS3 phosphoenolpyruvate-protein phosphotransferase YP_004785296.1 2858933 R 743299 CDS YP_004785297.1 344200971 11044610 complement(2860642..2860914) 1 NC_015942.1 KEGG: afr:AFE_3019 phosphocarrier protein HPr; TIGRFAM: Phosphotransferase system, phosphocarrier HPr protein; PFAM: Phosphotransferase system, phosphocarrier HPr protein; phosphotransferase system, phosphocarrier protein HPr 2860914 11044610 Acife_2897 Acidithiobacillus ferrivorans SS3 phosphotransferase system, phosphocarrier protein HPr YP_004785297.1 2860642 R 743299 CDS YP_004785298.1 344200972 11043584 complement(2860946..2861368) 1 NC_015942.1 PFAM: Phosphotransferase system, fructose subfamily IIA component; KEGG: afr:AFE_3020 PTS system, IIA component, putative; PTS system fructose subfamily IIA component 2861368 11043584 Acife_2898 Acidithiobacillus ferrivorans SS3 PTS system fructose subfamily IIA component YP_004785298.1 2860946 R 743299 CDS YP_004785299.1 344200973 11044611 complement(2861365..2862264) 1 NC_015942.1 HAMAP: ATPase, P-loop-containing; KEGG: afr:AFE_3021 ATPase; nucleotide-binding protein yhbJ 2862264 11044611 Acife_2899 Acidithiobacillus ferrivorans SS3 nucleotide-binding protein yhbJ YP_004785299.1 2861365 R 743299 CDS YP_004785300.1 344200974 11043585 complement(2862264..2863196) 1 NC_015942.1 PFAM: Signal transduction serine kinase/phosphorylase, HPr(Ser) kinase, C-terminal; KEGG: afr:AFE_3022 HPr(Ser) kinase/phosphatase; HPr kinase 2863196 11043585 Acife_2900 Acidithiobacillus ferrivorans SS3 HPr kinase YP_004785300.1 2862264 R 743299 CDS YP_004785301.1 344200975 11043586 complement(2863251..2863697) 1 NC_015942.1 PFAM: Phosphotransferase system, phosphoenolpyruvate-dependent sugar EIIA 2; KEGG: afr:AFE_3023 phosphoenolpyruvate-dependent sugar PTS system, EIIA component; putative PTS IIA-like nitrogen-regulatory protein PtsN 2863697 11043586 Acife_2901 Acidithiobacillus ferrivorans SS3 putative PTS IIA-like nitrogen-regulatory protein PtsN YP_004785301.1 2863251 R 743299 CDS YP_004785302.1 344200976 11044612 complement(2863704..2864045) 1 NC_015942.1 KEGG: afr:AFE_3024 ribosomal subunit interface protein; TIGRFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; PFAM: Ribosomal protein S30Ae/sigma 54 modulation protein; sigma 54 modulation protein/30S ribosomal protein S30EA 2864045 11044612 Acife_2902 Acidithiobacillus ferrivorans SS3 sigma 54 modulation protein/30S ribosomal protein S30EA YP_004785302.1 2863704 R 743299 CDS YP_004785303.1 344200977 11044613 complement(2864157..2865584) 1 NC_015942.1 KEGG: afr:AFE_3025 RNA polymerase sigma-54 factor; TIGRFAM: RNA polymerase sigma factor 54; PFAM: RNA polymerase sigma factor 54, DNA-binding; RNA polymerase sigma factor 54, core-binding; RNA polymerase sigma factor 54; RNA polymerase sigma-54 subunit RpoN 2865584 11044613 Acife_2903 Acidithiobacillus ferrivorans SS3 RNA polymerase sigma-54 subunit RpoN YP_004785303.1 2864157 R 743299 CDS YP_004785304.1 344200978 11043587 complement(2865597..2866322) 1 NC_015942.1 KEGG: afr:AFE_3026 ABC transporter, ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 2866322 11043587 Acife_2904 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004785304.1 2865597 R 743299 CDS YP_004785305.1 344200979 11043588 complement(2866319..2866849) 1 NC_015942.1 KEGG: afr:AFE_3027 hypothetical protein; TIGRFAM: Cell envelope biogenesis YhbN; PFAM: OstA-like protein; lipopolysaccharide transport periplasmic protein LptA 2866849 11043588 Acife_2905 Acidithiobacillus ferrivorans SS3 lipopolysaccharide transport periplasmic protein LptA YP_004785305.1 2866319 R 743299 CDS YP_004785306.1 344200980 11044614 complement(2866839..2867393) 1 NC_015942.1 PFAM: Protein of unknown function DUF1239; KEGG: afr:AFE_3028 hypothetical protein; hypothetical protein 2867393 11044614 Acife_2906 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785306.1 2866839 R 743299 CDS YP_004785307.1 344200981 11043589 complement(2867434..2867988) 1 NC_015942.1 TIGRFAM: Phosphatase KdsC; HAD-superfamily hydrolase, subfamily IIIA; KEGG: afr:AFE_3029 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 2867988 11043589 Acife_2907 Acidithiobacillus ferrivorans SS3 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase YP_004785307.1 2867434 R 743299 CDS YP_004785308.1 344200982 11043590 complement(2867985..2868917) 1 NC_015942.1 TIGRFAM: KpsF/GutQ; PFAM: Sugar isomerase (SIS); Cystathionine beta-synthase, core; KEGG: afr:AFE_3030 sugar isomerase, KpsF/GutQ family; SMART: Cystathionine beta-synthase, core; KpsF/GutQ family protein 2868917 11043590 Acife_2908 Acidithiobacillus ferrivorans SS3 KpsF/GutQ family protein YP_004785308.1 2867985 R 743299 CDS YP_004785309.1 344200983 11043591 complement(2868981..2869259) 1 NC_015942.1 KEGG: afe:Lferr_2639 hypothetical protein; hypothetical protein 2869259 11043591 Acife_2909 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785309.1 2868981 R 743299 CDS YP_004785310.1 344200984 11043592 complement(2869292..2869726) 1 NC_015942.1 KEGG: afr:AFE_3031 hypothetical protein; hypothetical protein 2869726 11043592 Acife_2910 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785310.1 2869292 R 743299 CDS YP_004785311.1 344200985 11043593 complement(2869716..2870405) 1 NC_015942.1 PFAM: Nucleotidyl transferase; KEGG: afr:AFE_3032 nucleotidyltransferase family protein; nucleotidyl transferase 2870405 11043593 Acife_2911 Acidithiobacillus ferrivorans SS3 nucleotidyl transferase YP_004785311.1 2869716 R 743299 CDS YP_004785312.1 344200986 11044615 complement(2870378..2871403) 1 NC_015942.1 PFAM: Aminoglycoside phosphotransferase; KEGG: afr:AFE_3033 phosphotransferase, putative; aminoglycoside phosphotransferase 2871403 11044615 Acife_2912 Acidithiobacillus ferrivorans SS3 aminoglycoside phosphotransferase YP_004785312.1 2870378 R 743299 CDS YP_004785313.1 344200987 11043594 2871433..2873628 1 NC_015942.1 PFAM: Organic solvent tolerance protein; OstA-like protein; KEGG: afe:Lferr_2643 organic solvent tolerance protein; Organic solvent tolerance protein 2873628 11043594 Acife_2913 Acidithiobacillus ferrivorans SS3 Organic solvent tolerance protein YP_004785313.1 2871433 D 743299 CDS YP_004785314.1 344200988 11043595 2873628..2875061 1 NC_015942.1 KEGG: afe:Lferr_2644 SurA domain; HAMAP: Chaperone surA; PFAM: SurA N-terminal; Peptidyl-prolyl cis-trans isomerase, PpiC-type; chaperone surA 2875061 11043595 Acife_2914 Acidithiobacillus ferrivorans SS3 chaperone surA YP_004785314.1 2873628 D 743299 CDS YP_004785315.1 344200989 11043596 2875069..2875866 1 NC_015942.1 PFAM: ABC-2 type transporter; KEGG: afr:AFE_3036 ABC-2 type transporter; ABC transporter 2875866 11043596 Acife_2915 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004785315.1 2875069 D 743299 CDS YP_004785316.1 344200990 11043597 2875964..2876218 1 NC_015942.1 PFAM: BolA-like protein; KEGG: afr:AFE_3037 BolA family protein; BolA family protein 2876218 11043597 Acife_2916 Acidithiobacillus ferrivorans SS3 BolA family protein YP_004785316.1 2875964 D 743299 CDS YP_004785317.1 344200991 11044616 2876254..2876586 1 NC_015942.1 KEGG: afr:AFE_3038 glutaredoxin-related protein; TIGRFAM: Glutaredoxin-related protein; PFAM: Glutaredoxin; glutaredoxin-like protein 2876586 11044616 Acife_2917 Acidithiobacillus ferrivorans SS3 glutaredoxin-like protein YP_004785317.1 2876254 D 743299 CDS YP_004785318.1 344200992 11043598 2876596..2877870 1 NC_015942.1 TIGRFAM: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; HAMAP: UDP-N-acetylglucosamine 1-carboxyvinyltransferase; KEGG: afr:AFE_3039 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; PFAM: 3-phosphoshikimate 1-carboxyvinyltransferase, core; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2877870 11043598 Acife_2918 Acidithiobacillus ferrivorans SS3 UDP-N-acetylglucosamine 1-carboxyvinyltransferase YP_004785318.1 2876596 D 743299 CDS YP_004785319.1 344200993 11043599 2877867..2878514 1 NC_015942.1 TIGRFAM: ATP phosphoribosyltransferase, catalytic region; HAMAP: ATP phosphoribosyltransferase; KEGG: afr:AFE_3040 ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase, catalytic region; ATP phosphoribosyltransferase 2878514 11043599 Acife_2919 Acidithiobacillus ferrivorans SS3 ATP phosphoribosyltransferase YP_004785319.1 2877867 D 743299 CDS YP_004785320.1 344200994 11043600 2878511..2879812 1 NC_015942.1 TIGRFAM: Histidinol dehydrogenase, prokaryotic-type; HAMAP: Histidinol dehydrogenase, prokaryotic-type; KEGG: afr:AFE_3041 histidinol dehydrogenase; PFAM: Histidinol dehydrogenase, prokaryotic-type; histidinol dehydrogenase 2879812 11043600 Acife_2920 Acidithiobacillus ferrivorans SS3 histidinol dehydrogenase YP_004785320.1 2878511 D 743299 CDS YP_004785321.1 344200995 11044617 2879809..2880888 1 NC_015942.1 TIGRFAM: Histidinol-phosphate aminotransferase; HAMAP: Histidinol-phosphate aminotransferase; KEGG: afr:AFE_3042 histidinol-phosphate aminotransferase; PFAM: Aminotransferase, class I/II; histidinol-phosphate aminotransferase 2880888 11044617 Acife_2921 Acidithiobacillus ferrivorans SS3 histidinol-phosphate aminotransferase YP_004785321.1 2879809 D 743299 CDS YP_004785322.1 344200996 11043601 2880885..2881484 1 NC_015942.1 KEGG: afr:AFE_3043 imidazoleglycerol-phosphate dehydratase; HAMAP: Imidazoleglycerol-phosphate dehydratase; PFAM: Imidazoleglycerol-phosphate dehydratase; Imidazoleglycerol-phosphate dehydratase 2881484 11043601 Acife_2922 Acidithiobacillus ferrivorans SS3 Imidazoleglycerol-phosphate dehydratase YP_004785322.1 2880885 D 743299 CDS YP_004785323.1 344200997 11044618 2881481..2882152 1 NC_015942.1 TIGRFAM: Imidazole glycerol phosphate synthase, subunit H; HAMAP: Imidazole glycerol phosphate synthase, subunit H; KEGG: afr:AFE_3044 imidazole glycerol phosphate synthase subunit HisH; PFAM: Glutamine amidotransferase class-I, C-terminal; Imidazole glycerol phosphate synthase subunit hisH 2882152 11044618 Acife_2923 Acidithiobacillus ferrivorans SS3 Imidazole glycerol phosphate synthase subunit hisH YP_004785323.1 2881481 D 743299 CDS YP_004785324.1 344200998 11043602 2882192..2882920 1 NC_015942.1 TIGRFAM: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; HAMAP: 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; KEGG: afr:AFE_3045 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; PFAM: Histidine biosynthesis; 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase 2882920 11043602 Acife_2924 Acidithiobacillus ferrivorans SS3 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino) imidazole-4-carboxamide isomerase YP_004785324.1 2882192 D 743299 CDS YP_004785325.1 344200999 11043603 2882925..2883686 1 NC_015942.1 TIGRFAM: Histidine biosynthesis, HisF; HAMAP: Imidazole glycerol phosphate synthase subunit hisF; KEGG: afr:AFE_3046 imidazole glycerol phosphate synthase subunit HisF; PFAM: Histidine biosynthesis; Imidazole glycerol phosphate synthase subunit hisF 2883686 11043603 Acife_2925 Acidithiobacillus ferrivorans SS3 Imidazole glycerol phosphate synthase subunit hisF YP_004785325.1 2882925 D 743299 CDS YP_004785326.1 344201000 11044619 2883766..2884464 1 NC_015942.1 PFAM: Phosphoribosyl-AMP cyclohydrolase; Phosphoribosyl-ATP pyrophosphohydrolase; TIGRFAM: Phosphoribosyl-ATP pyrophosphohydrolase; HAMAP: Histidine biosynthesis bifunctional protein hisIE; KEGG: afr:AFE_3047 phosphoribosyl-AMP pyrophosphatase/phosphoribosyl-ATP cyclohydrolase; histidine biosynthesis bifunctional protein hisIE 2884464 11044619 Acife_2926 Acidithiobacillus ferrivorans SS3 histidine biosynthesis bifunctional protein hisIE YP_004785326.1 2883766 D 743299 CDS YP_004785327.1 344201001 11044620 2884539..2884757 1 NC_015942.1 TIGRFAM: Twin-arginine translocation protein TatA/E; HAMAP: Twin-arginine translocation protein TatA/E; KEGG: afr:AFE_3048 twin-arginine translocation protein, TatA/E family; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106; Sec-independent protein translocase protein tatA/E-like protein 2884757 11044620 Acife_2927 Acidithiobacillus ferrivorans SS3 Sec-independent protein translocase protein tatA/E-like protein YP_004785327.1 2884539 D 743299 CDS YP_004785328.1 344201002 11043604 2884764..2885135 1 NC_015942.1 KEGG: afr:AFE_3049 twin-arginine translocation protein TatB; TIGRFAM: Twin-arginine translocation protein TatB; PFAM: Bacterial sec-independent translocation protein mttA/Hcf106; twin-arginine translocation protein, TatB subunit 2885135 11043604 Acife_2928 Acidithiobacillus ferrivorans SS3 twin-arginine translocation protein, TatB subunit YP_004785328.1 2884764 D 743299 CDS YP_004785329.1 344201003 11043605 2885196..2886032 1 NC_015942.1 KEGG: afr:AFE_3050 sec-independent protein translocase TatC; TIGRFAM: Twin arginine-targeting protein translocase, TatC; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase, TatC subunit 2886032 11043605 Acife_2929 Acidithiobacillus ferrivorans SS3 Sec-independent protein translocase, TatC subunit YP_004785329.1 2885196 D 743299 CDS YP_004785330.1 344201004 11043606 2886210..2887394 1 NC_015942.1 PFAM: Glycosyl transferase, group 1; KEGG: afr:AFE_1357 glycosyl transferase, group 1; group 1 glycosyl transferase 2887394 11043606 Acife_2930 Acidithiobacillus ferrivorans SS3 group 1 glycosyl transferase YP_004785330.1 2886210 D 743299 CDS YP_004785331.1 344201005 11043607 2887391..2887747 1 NC_015942.1 KEGG: afr:AFE_3291 NAD-dependent epimerase/dehydratase family protein; hypothetical protein 2887747 11043607 Acife_2931 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785331.1 2887391 D 743299 CDS YP_004785332.1 344201006 11044621 2888085..2888288 1 NC_015942.1 KEGG: afr:AFE_0590 cold-shock protein; PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 2888288 11044621 Acife_2932 Acidithiobacillus ferrivorans SS3 cold-shock DNA-binding domain-containing protein YP_004785332.1 2888085 D 743299 CDS YP_004785333.1 344201007 11043608 complement(2888590..2888850) 1 NC_015942.1 manually curated; hypothetical protein 2888850 11043608 Acife_2933 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785333.1 2888590 R 743299 CDS YP_004785334.1 344201008 11043609 2888912..2891908 1 NC_015942.1 TIGRFAM: Diguanylate cyclase, predicted; PAS; Twin-arginine translocation pathway, signal sequence; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS fold; GAF; PAS fold-4; KEGG: afe:Lferr_2664 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase; SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; PAS; PAC motif; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase 2891908 11043609 Acife_2934 Acidithiobacillus ferrivorans SS3 PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase YP_004785334.1 2888912 D 743299 CDS YP_004785335.1 344201009 11043610 2891954..2893987 1 NC_015942.1 KEGG: afr:AFE_1753 potassium uptake protein; HAMAP: Low affinity potassium transport system protein kup; PFAM: K+ potassium transporter; Low affinity potassium transport system protein kup 2893987 11043610 Acife_2935 Acidithiobacillus ferrivorans SS3 Low affinity potassium transport system protein kup YP_004785335.1 2891954 D 743299 CDS YP_004785336.1 344201010 11044622 complement(2894005..2894433) 1 NC_015942.1 KEGG: afr:AFE_0096 hypothetical protein; hypothetical protein 2894433 11044622 Acife_2936 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785336.1 2894005 R 743299 CDS YP_004785337.1 344201011 11043611 complement(2894436..2894855) 1 NC_015942.1 KEGG: afr:AFE_2648 hypothetical protein; hypothetical protein 2894855 11043611 Acife_2937 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785337.1 2894436 R 743299 CDS YP_004785338.1 344201012 11043612 2894940..2895080 1 NC_015942.1 hypothetical protein 2895080 11043612 Acife_2938 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785338.1 2894940 D 743299 CDS YP_004785339.1 344201013 11043613 complement(2895119..2896393) 1 NC_015942.1 PFAM: Amidohydrolase 1; KEGG: afr:AFE_3058 dihydroorotase, multifunctional complex type; amidohydrolase 2896393 11043613 Acife_2939 Acidithiobacillus ferrivorans SS3 amidohydrolase YP_004785339.1 2895119 R 743299 CDS YP_004785340.1 344201014 11043614 complement(2896399..2897382) 1 NC_015942.1 TIGRFAM: Aspartate carbamoyltransferase, eukaryotic; HAMAP: Aspartate carbamoyltransferase; KEGG: afr:AFE_3059 aspartate carbamoyltransferase catalytic subunit; PFAM: Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding; Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding region; aspartate carbamoyltransferase 2897382 11043614 Acife_2940 Acidithiobacillus ferrivorans SS3 aspartate carbamoyltransferase YP_004785340.1 2896399 R 743299 CDS YP_004785341.1 344201015 11044623 complement(2897379..2897885) 1 NC_015942.1 PFAM: Phosphoribosyltransferase; KEGG: afr:AFE_3060 PyrR bifunctional protein; phosphoribosyltransferase 2897885 11044623 Acife_2941 Acidithiobacillus ferrivorans SS3 phosphoribosyltransferase YP_004785341.1 2897379 R 743299 CDS YP_004785342.1 344201016 11043615 complement(2897882..2898313) 1 NC_015942.1 SMART: Resolvase, RNase H-like fold; TIGRFAM: Resolvase, holliday junction-type, YqgF-like; KEGG: afr:AFE_3061 hypothetical protein; HAMAP: Holliday junction resolvase; PFAM: Resolvase, holliday junction-type, YqgF-like; Holliday junction resolvase 2898313 11043615 Acife_2942 Acidithiobacillus ferrivorans SS3 Holliday junction resolvase YP_004785342.1 2897882 R 743299 CDS YP_004785343.1 344201017 11043616 complement(2898306..2898863) 1 NC_015942.1 KEGG: afr:AFE_3062 hypothetical protein; HAMAP: Protein of unknown function DUF179; PFAM: Protein of unknown function DUF179; hypothetical protein 2898863 11043616 Acife_2943 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785343.1 2898306 R 743299 CDS YP_004785344.1 344201018 11043617 complement(2899070..2899990) 1 NC_015942.1 KEGG: afr:AFE_1275 hypothetical protein; hypothetical protein 2899990 11043617 Acife_2944 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785344.1 2899070 R 743299 CDS YP_004785345.1 344201019 11043618 complement(2900005..2900214) 1 NC_015942.1 KEGG: afr:AFE_1274 hypothetical protein; hypothetical protein 2900214 11043618 Acife_2945 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785345.1 2900005 R 743299 CDS YP_004785346.1 344201020 11043619 complement(2900892..2901101) 1 NC_015942.1 KEGG: tin:Tint_1902 hypothetical protein; hypothetical protein 2901101 11043619 Acife_2946 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785346.1 2900892 R 743299 CDS YP_004785347.1 344201021 11044624 complement(2901256..2901447) 1 NC_015942.1 KEGG: app:CAP2UW1_4512 hypothetical protein; hypothetical protein 2901447 11044624 Acife_2947 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785347.1 2901256 R 743299 CDS YP_004785348.1 344201022 11043620 complement(2901444..2902238) 1 NC_015942.1 KEGG: app:CAP2UW1_4513 AAA ATPase; AAA ATPase 2902238 11043620 Acife_2948 Acidithiobacillus ferrivorans SS3 AAA ATPase YP_004785348.1 2901444 R 743299 CDS YP_004785349.1 344201023 11043621 complement(2902241..2903563) 1 NC_015942.1 PFAM: Integrase, catalytic core; KEGG: app:CAP2UW1_4407 integrase catalytic subunit; integrase catalytic subunit 2903563 11043621 Acife_2949 Acidithiobacillus ferrivorans SS3 integrase catalytic subunit YP_004785349.1 2902241 R 743299 CDS YP_004785350.1 344201024 11043622 complement(2903693..2904226) 1 NC_015942.1 KEGG: app:CAP2UW1_4515 hypothetical protein; hypothetical protein 2904226 11043622 Acife_2950 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785350.1 2903693 R 743299 CDS YP_004785351.1 344201025 11043623 complement(2904542..2906059) 1 NC_015942.1 KEGG: afr:AFE_1292 hypothetical protein; hypothetical protein 2906059 11043623 Acife_2951 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785351.1 2904542 R 743299 CDS YP_004785352.1 344201026 11043624 2906127..2906309 1 NC_015942.1 hypothetical protein 2906309 11043624 Acife_2952 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785352.1 2906127 D 743299 CDS YP_004785353.1 344201027 11043625 2906338..2906781 1 NC_015942.1 KEGG: afr:AFE_1287 hypothetical protein; hypothetical protein 2906781 11043625 Acife_2953 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785353.1 2906338 D 743299 CDS YP_004785354.1 344201028 11043626 complement(2906866..2907453) 1 NC_015942.1 KEGG: afr:AFE_1325 hypothetical protein; hypothetical protein 2907453 11043626 Acife_2954 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785354.1 2906866 R 743299 CDS YP_004785355.1 344201029 11044625 2907864..2908832 1 NC_015942.1 KEGG: afr:AFE_1323 hypothetical protein; hypothetical protein 2908832 11044625 Acife_2955 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785355.1 2907864 D 743299 CDS YP_004785356.1 344201030 11043627 2908855..2909334 1 NC_015942.1 hypothetical protein 2909334 11043627 Acife_2956 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785356.1 2908855 D 743299 CDS YP_004785357.1 344201031 11043628 2909338..2909664 1 NC_015942.1 KEGG: afr:AFE_1321 hypothetical protein; HAMAP: UPF0145 protein ybjQ; PFAM: Uncharacterised protein family UPF0145; hypothetical protein 2909664 11043628 Acife_2957 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785357.1 2909338 D 743299 CDS YP_004785358.1 344201032 11043629 complement(2909693..2910370) 1 NC_015942.1 KEGG: afr:AFE_1223 hypothetical protein; hypothetical protein 2910370 11043629 Acife_2958 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785358.1 2909693 R 743299 CDS YP_004785359.1 344201033 11043630 complement(2910391..2910687) 1 NC_015942.1 KEGG: geo:Geob_2001 transcriptional modulator of MazE/toxin, MazF; transcriptional modulator of MazE/toxin, MazF 2910687 11043630 Acife_2959 Acidithiobacillus ferrivorans SS3 transcriptional modulator of MazE/toxin, MazF YP_004785359.1 2910391 R 743299 CDS YP_004785360.1 344201034 11044626 complement(2910681..2910917) 1 NC_015942.1 PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: lbl:LBL_2676 proteic killer gene system protein, suppressor of inhibitory function of MazF; SpoVT/AbrB domain-containing protein 2910917 11044626 Acife_2960 Acidithiobacillus ferrivorans SS3 SpoVT/AbrB domain-containing protein YP_004785360.1 2910681 R 743299 CDS YP_004785361.1 344201035 11043631 complement(2911033..2911458) 1 NC_015942.1 hypothetical protein 2911458 11043631 Acife_2961 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785361.1 2911033 R 743299 CDS YP_004785362.1 344201036 11043632 complement(2911455..2912072) 1 NC_015942.1 KEGG: abm:ABSDF1778 hypothetical protein; hypothetical protein 2912072 11043632 Acife_2962 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785362.1 2911455 R 743299 CDS YP_004785363.1 344201037 11043633 complement(2912111..2912761) 1 NC_015942.1 hypothetical protein 2912761 11043633 Acife_2963 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785363.1 2912111 R 743299 CDS YP_004785364.1 344201038 11044627 complement(2912767..2913222) 1 NC_015942.1 PFAM: Protein of unknown function DUF29; KEGG: pay:PAU_03739 hypothetical protein; hypothetical protein 2913222 11044627 Acife_2964 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785364.1 2912767 R 743299 CDS YP_004785365.1 344201039 11043634 complement(2913236..2913457) 1 NC_015942.1 hypothetical protein 2913457 11043634 Acife_2965 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785365.1 2913236 R 743299 CDS YP_004785366.1 344201040 11043635 complement(2913478..2914128) 1 NC_015942.1 hypothetical protein 2914128 11043635 Acife_2966 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785366.1 2913478 R 743299 CDS YP_004785367.1 344201041 11043636 complement(2914259..2914672) 1 NC_015942.1 PFAM: PilT protein, N-terminal; KEGG: afr:AFE_2129 virulence-associated protein, putative; PilT protein domain-containing protein 2914672 11043636 Acife_2967 Acidithiobacillus ferrivorans SS3 PilT protein domain-containing protein YP_004785367.1 2914259 R 743299 CDS YP_004785368.1 344201042 11043637 complement(2914669..2914899) 1 NC_015942.1 KEGG: afr:AFE_2130 virulence-associated protein, putative; virulence-associated protein 2914899 11043637 Acife_2968 Acidithiobacillus ferrivorans SS3 virulence-associated protein YP_004785368.1 2914669 R 743299 CDS YP_004785369.1 344201043 11043638 complement(2915033..2915539) 1 NC_015942.1 PFAM: GCN5-related N-acetyltransferase; KEGG: gpb:HDN1F_22990 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 2915539 11043638 Acife_2969 Acidithiobacillus ferrivorans SS3 GCN5-like N-acetyltransferase YP_004785369.1 2915033 R 743299 CDS YP_004785370.1 344201044 11043639 complement(2915536..2915814) 1 NC_015942.1 PFAM: Protein of unknown function DUF1778; KEGG: gpb:HDN1F_23000 hypothetical protein; hypothetical protein 2915814 11043639 Acife_2970 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785370.1 2915536 R 743299 CDS YP_004785371.1 344201045 11043640 complement(2915918..2919280) 1 NC_015942.1 PFAM: TraG-like, N-terminal; KEGG: afr:AFE_1068 pilus assembly protein TraG, putative; TraG domain-containing protein 2919280 11043640 Acife_2971 Acidithiobacillus ferrivorans SS3 TraG domain-containing protein YP_004785371.1 2915918 R 743299 CDS YP_004785372.1 344201046 11044628 complement(2919305..2920924) 1 NC_015942.1 PFAM: Type IV conjugative transfer system protein TraH; KEGG: afr:AFE_1067 pilus assembly protein TraH, putative; TraH family protein 2920924 11044628 Acife_2972 Acidithiobacillus ferrivorans SS3 TraH family protein YP_004785372.1 2919305 R 743299 CDS YP_004785373.1 344201047 11043641 complement(2920935..2921900) 1 NC_015942.1 KEGG: afr:AFE_1066 pilus assembly protein TraF, putative; pilus assembly protein TraF 2921900 11043641 Acife_2973 Acidithiobacillus ferrivorans SS3 pilus assembly protein TraF YP_004785373.1 2920935 R 743299 CDS YP_004785374.1 344201048 11044629 complement(2921897..2922409) 1 NC_015942.1 PFAM: Lytic transglycosylase-like, catalytic; KEGG: afr:AFE_1065 conjugal transfer protein, putative; lytic transglycosylase 2922409 11044629 Acife_2974 Acidithiobacillus ferrivorans SS3 lytic transglycosylase YP_004785374.1 2921897 R 743299 CDS YP_004785375.1 344201049 11043642 2922529..2922651 1 NC_015942.1 hypothetical protein 2922651 11043642 Acife_2975 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785375.1 2922529 D 743299 CDS YP_004785376.1 344201050 11043643 2922638..2922904 1 NC_015942.1 hypothetical protein 2922904 11043643 Acife_2976 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785376.1 2922638 D 743299 CDS YP_004785377.1 344201051 11044630 2922909..2923046 1 NC_015942.1 hypothetical protein 2923046 11044630 Acife_2977 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785377.1 2922909 D 743299 CDS YP_004785378.1 344201052 11043644 2923055..2923228 1 NC_015942.1 hypothetical protein 2923228 11043644 Acife_2978 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785378.1 2923055 D 743299 CDS YP_004785379.1 344201053 11044631 complement(2923267..2924187) 1 NC_015942.1 KEGG: afr:AFE_1255 hypothetical protein; hypothetical protein 2924187 11044631 Acife_2979 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785379.1 2923267 R 743299 CDS YP_004785380.1 344201054 11043645 complement(2924187..2926601) 1 NC_015942.1 SMART: Metal-dependent phosphohydrolase, HD region; KEGG: afr:AFE_1254 hypothetical protein; metal-dependent phosphohydrolase HD region 2926601 11043645 Acife_2980 Acidithiobacillus ferrivorans SS3 metal-dependent phosphohydrolase HD region YP_004785380.1 2924187 R 743299 CDS YP_004785381.1 344201055 11043646 2926841..2928178 1 NC_015942.1 PFAM: Transposase, IS4-like; KEGG: npu:Npun_BR216 hypothetical protein; transposase IS4 family protein 2928178 11043646 Acife_2981 Acidithiobacillus ferrivorans SS3 transposase IS4 family protein YP_004785381.1 2926841 D 743299 CDS YP_004785382.1 344201056 11043647 2928182..2929090 1 NC_015942.1 KEGG: dat:HRM2_05840 hypothetical protein; hypothetical protein 2929090 11043647 Acife_2982 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785382.1 2928182 D 743299 CDS YP_004785383.1 344201057 11043648 complement(2929138..2929482) 1 NC_015942.1 hypothetical protein 2929482 11043648 Acife_2983 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785383.1 2929138 R 743299 CDS YP_004785384.1 344201058 11044632 complement(2929494..2930273) 1 NC_015942.1 manually curated; KEGG: afr:AFE_1253 hypothetical protein; hypothetical protein 2930273 11044632 Acife_2984 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785384.1 2929494 R 743299 CDS YP_004785385.1 344201059 11043649 complement(2930422..2931837) 1 NC_015942.1 KEGG: afr:AFE_1023 HNH endonuclease domain protein; PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease 2931837 11043649 Acife_2985 Acidithiobacillus ferrivorans SS3 HNH endonuclease YP_004785385.1 2930422 R 743299 CDS YP_004785386.1 344201060 11043650 complement(2932129..2932416) 1 NC_015942.1 hypothetical protein 2932416 11043650 Acife_2986 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785386.1 2932129 R 743299 CDS YP_004785387.1 344201061 11043651 complement(2932409..2934238) 1 NC_015942.1 KEGG: afr:AFE_1251 lipoprotein, putative; lipoprotein 2934238 11043651 Acife_2987 Acidithiobacillus ferrivorans SS3 lipoprotein YP_004785387.1 2932409 R 743299 CDS YP_004785388.1 344201062 11043652 complement(2934318..2934728) 1 NC_015942.1 KEGG: afr:AFE_2845 single-strand binding protein; TIGRFAM: Single-strand DNA-binding; PFAM: Primosome PriB/single-strand DNA-binding; single-strand binding protein 2934728 11043652 Acife_2988 Acidithiobacillus ferrivorans SS3 single-strand binding protein YP_004785388.1 2934318 R 743299 CDS YP_004785389.1 344201063 11044633 complement(2934955..2935905) 1 NC_015942.1 KEGG: afr:AFE_1257 hypothetical protein; hypothetical protein 2935905 11044633 Acife_2989 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785389.1 2934955 R 743299 CDS YP_004785390.1 344201064 11043653 complement(2935899..2937263) 1 NC_015942.1 KEGG: afr:AFE_1258 DNA topoisomerase domain protein; PFAM: DNA topoisomerase, type IA, central; SMART: DNA topoisomerase, type IA, domain 2; DNA topoisomerase type IA central domain-containing protein 2937263 11043653 Acife_2990 Acidithiobacillus ferrivorans SS3 DNA topoisomerase type IA central domain-containing protein YP_004785390.1 2935899 R 743299 CDS YP_004785391.1 344201065 11043654 2937393..2937848 1 NC_015942.1 KEGG: afr:AFE_1288 hypothetical protein; hypothetical protein 2937848 11043654 Acife_2991 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785391.1 2937393 D 743299 CDS YP_004785392.1 344201066 11043655 2938021..2938284 1 NC_015942.1 hypothetical protein 2938284 11043655 Acife_2992 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785392.1 2938021 D 743299 CDS YP_004785393.1 344201067 11043656 2938423..2939346 1 NC_015942.1 KEGG: afr:AFE_1297 cobalamin biosynthesis protein, CobS family; PFAM: ATPase associated with various cellular activities, AAA-5; SMART: ATPase, AAA+ type, core; ATPase 2939346 11043656 Acife_2993 Acidithiobacillus ferrivorans SS3 ATPase YP_004785393.1 2938423 D 743299 CDS YP_004785394.1 344201068 11043657 2939346..2939441 1 NC_015942.1 hypothetical protein 2939441 11043657 Acife_2994 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785394.1 2939346 D 743299 CDS YP_004785395.1 344201069 11043658 2939463..2939825 1 NC_015942.1 hypothetical protein 2939825 11043658 Acife_2995 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785395.1 2939463 D 743299 CDS YP_004785396.1 344201070 11044634 2939896..2940216 1 NC_015942.1 hypothetical protein 2940216 11044634 Acife_2996 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785396.1 2939896 D 743299 CDS YP_004785397.1 344201071 11043659 2940342..2940791 1 NC_015942.1 hypothetical protein 2940791 11043659 Acife_2997 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785397.1 2940342 D 743299 CDS YP_004785398.1 344201072 11044635 2940859..2941419 1 NC_015942.1 PFAM: Peptidase M50; KEGG: afr:AFE_1024 membrane-associated zinc metalloprotease, putative; peptidase M50 2941419 11044635 Acife_2998 Acidithiobacillus ferrivorans SS3 peptidase M50 YP_004785398.1 2940859 D 743299 CDS YP_004785399.1 344201073 11043660 2941548..2941760 1 NC_015942.1 hypothetical protein 2941760 11043660 Acife_2999 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785399.1 2941548 D 743299 CDS YP_004785400.1 344201074 11043661 2941802..2942191 1 NC_015942.1 KEGG: afr:AFE_1045 hypothetical protein; hypothetical protein 2942191 11043661 Acife_3000 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785400.1 2941802 D 743299 CDS YP_004785401.1 344201075 11044636 2942178..2942306 1 NC_015942.1 hypothetical protein 2942306 11044636 Acife_3001 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785401.1 2942178 D 743299 CDS YP_004785402.1 344201076 11043662 2942308..2943117 1 NC_015942.1 KEGG: afr:AFE_1283 hypothetical protein; hypothetical protein 2943117 11043662 Acife_3002 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785402.1 2942308 D 743299 CDS YP_004785403.1 344201077 11043663 2944050..2945015 1 NC_015942.1 KEGG: bvi:Bcep1808_6806 5'-3' exonuclease; PFAM: 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 5'-3' exonuclease 2945015 11043663 Acife_3004 Acidithiobacillus ferrivorans SS3 5'-3' exonuclease YP_004785403.1 2944050 D 743299 CDS YP_004785404.1 344201078 11043664 2944999..2945514 1 NC_015942.1 KEGG: afr:AFE_1060 hypothetical protein; hypothetical protein 2945514 11043664 Acife_3005 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785404.1 2944999 D 743299 CDS YP_004785405.1 344201079 11043665 2945548..2946207 1 NC_015942.1 PFAM: Fertility inhibition FinO-like; Fertility inhibition FinO-like protein 2946207 11043665 Acife_3006 Acidithiobacillus ferrivorans SS3 Fertility inhibition FinO-like protein YP_004785405.1 2945548 D 743299 CDS YP_004785406.1 344201080 11043666 2946161..2946511 1 NC_015942.1 KEGG: afr:AFE_1584 DNA-binding protein HU family protein; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 2946511 11043666 Acife_3007 Acidithiobacillus ferrivorans SS3 histone family protein DNA-binding protein YP_004785406.1 2946161 D 743299 CDS YP_004785407.1 344201081 11044638 2946514..2946795 1 NC_015942.1 KEGG: afr:AFE_1070 DNA-binding protein, HU family; PFAM: Histone-like bacterial DNA-binding protein; SMART: Histone-like bacterial DNA-binding protein; histone family protein DNA-binding protein 2946795 11044638 Acife_3008 Acidithiobacillus ferrivorans SS3 histone family protein DNA-binding protein YP_004785407.1 2946514 D 743299 CDS YP_004785408.1 344201082 11043667 complement(2946860..2947465) 1 NC_015942.1 hypothetical protein 2947465 11043667 Acife_3009 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785408.1 2946860 R 743299 CDS YP_004785409.1 344201083 11043668 complement(2947490..2948383) 1 NC_015942.1 PFAM: Integrase, catalytic core, phage; KEGG: afr:AFE_1145 tyrosine recombinase, phage integrase family; integrase family protein 2948383 11043668 Acife_3010 Acidithiobacillus ferrivorans SS3 integrase family protein YP_004785409.1 2947490 R 743299 CDS YP_004785410.1 344201084 11043669 2948580..2948936 1 NC_015942.1 KEGG: afr:AFE_1146 hypothetical protein; hypothetical protein 2948936 11043669 Acife_3011 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785410.1 2948580 D 743299 CDS YP_004785411.1 344201085 11043670 2948923..2949468 1 NC_015942.1 KEGG: afr:AFE_1943 DsbG domain protein; hypothetical protein 2949468 11043670 Acife_3012 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785411.1 2948923 D 743299 CDS YP_004785412.1 344201086 11043671 2949479..2949988 1 NC_015942.1 hypothetical protein 2949988 11043671 Acife_3013 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785412.1 2949479 D 743299 CDS YP_004785413.1 344201087 11043672 2950554..2951984 1 NC_015942.1 PFAM: UbiA prenyltransferase; KEGG: nde:NIDE3581 putative UbiA family prenyltransferase; UbiA prenyltransferase 2951984 11043672 Acife_3014 Acidithiobacillus ferrivorans SS3 UbiA prenyltransferase YP_004785413.1 2950554 D 743299 CDS YP_004785414.1 344201088 11043673 2951981..2953288 1 NC_015942.1 PFAM: FAD linked oxidase, N-terminal; KEGG: gpb:HDN1F_16410 oxidoreductase; FAD linked oxidase domain-containing protein 2953288 11043673 Acife_3015 Acidithiobacillus ferrivorans SS3 FAD linked oxidase domain-containing protein YP_004785414.1 2951981 D 743299 CDS YP_004785415.1 344201089 11044639 2953291..2954028 1 NC_015942.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA2567 short chain dehydrogenase; short-chain dehydrogenase/reductase SDR 2954028 11044639 Acife_3016 Acidithiobacillus ferrivorans SS3 short-chain dehydrogenase/reductase SDR YP_004785415.1 2953291 D 743299 CDS YP_004785416.1 344201090 11043674 2954058..2956277 1 NC_015942.1 KEGG: hypothetical protein; hypothetical protein 2956277 11043674 Acife_3017 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785416.1 2954058 D 743299 CDS YP_004785417.1 344201091 11044640 2956343..2957296 1 NC_015942.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: aav:Aave_0060 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 2957296 11044640 Acife_3018 Acidithiobacillus ferrivorans SS3 NAD-dependent epimerase/dehydratase YP_004785417.1 2956343 D 743299 CDS YP_004785418.1 344201092 11043675 2957304..2958590 1 NC_015942.1 PFAM: Amine oxidase; KEGG: meh:M301_1240 amine oxidase; amine oxidase 2958590 11043675 Acife_3019 Acidithiobacillus ferrivorans SS3 amine oxidase YP_004785418.1 2957304 D 743299 CDS YP_004785419.1 344201093 11043676 2958601..2959017 1 NC_015942.1 KEGG: hha:Hhal_1553 hypothetical protein; hypothetical protein 2959017 11043676 Acife_3020 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785419.1 2958601 D 743299 CDS YP_004785420.1 344201094 11044641 2959014..2959124 1 NC_015942.1 hypothetical protein 2959124 11044641 Acife_3021 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785420.1 2959014 D 743299 CDS YP_004785421.1 344201095 11043677 complement(2959100..2959369) 1 NC_015942.1 hypothetical protein 2959369 11043677 Acife_3022 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785421.1 2959100 R 743299 CDS YP_004785422.1 344201096 11044642 complement(2959419..2960081) 1 NC_015942.1 PFAM: NERD; KEGG: afr:AFE_1109 hypothetical protein; NERD domain-containing protein 2960081 11044642 Acife_3023 Acidithiobacillus ferrivorans SS3 NERD domain-containing protein YP_004785422.1 2959419 R 743299 CDS YP_004785423.1 344201097 11043678 complement(2960078..2960860) 1 NC_015942.1 hypothetical protein 2960860 11043678 Acife_3024 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785423.1 2960078 R 743299 CDS YP_004785424.1 344201098 11043679 complement(2960857..2961150) 1 NC_015942.1 hypothetical protein 2961150 11043679 Acife_3025 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785424.1 2960857 R 743299 CDS YP_004785425.1 344201099 11043680 complement(2961193..2961402) 1 NC_015942.1 hypothetical protein 2961402 11043680 Acife_3026 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785425.1 2961193 R 743299 CDS YP_004785426.1 344201100 11043681 complement(2961423..2961767) 1 NC_015942.1 KEGG: afr:AFE_1108 hypothetical protein; hypothetical protein 2961767 11043681 Acife_3027 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785426.1 2961423 R 743299 CDS YP_004785427.1 344201101 11043682 complement(2961764..2962297) 1 NC_015942.1 KEGG: afr:AFE_1107 hypothetical protein; hypothetical protein 2962297 11043682 Acife_3028 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785427.1 2961764 R 743299 CDS YP_004785428.1 344201102 11043683 complement(2962294..2962806) 1 NC_015942.1 KEGG: afr:AFE_1020 hypothetical protein; hypothetical protein 2962806 11043683 Acife_3029 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785428.1 2962294 R 743299 CDS YP_004785429.1 344201103 11043684 complement(2962796..2963353) 1 NC_015942.1 KEGG: xfn:XfasM23_2243 hypothetical protein; hypothetical protein 2963353 11043684 Acife_3030 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785429.1 2962796 R 743299 CDS YP_004785430.1 344201104 11044643 complement(2963353..2964603) 1 NC_015942.1 KEGG: afr:AFE_1104 conserved domain protein, putative; conserved domain-containing protein 2964603 11044643 Acife_3031 Acidithiobacillus ferrivorans SS3 conserved domain-containing protein YP_004785430.1 2963353 R 743299 CDS YP_004785431.1 344201105 11043685 complement(2964603..2965610) 1 NC_015942.1 KEGG: afr:AFE_1103 hypothetical protein; hypothetical protein 2965610 11043685 Acife_3032 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785431.1 2964603 R 743299 CDS YP_004785432.1 344201106 11043686 complement(2965621..2966679) 1 NC_015942.1 KEGG: afr:AFE_1100 hypothetical protein; hypothetical protein 2966679 11043686 Acife_3033 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785432.1 2965621 R 743299 CDS YP_004785433.1 344201107 11043687 complement(2966716..2967057) 1 NC_015942.1 PFAM: PemK-like protein; KEGG: afr:AFE_1099 ChpA protein; transcriptional modulator of MazE/toxin, MazF 2967057 11043687 Acife_3034 Acidithiobacillus ferrivorans SS3 transcriptional modulator of MazE/toxin, MazF YP_004785433.1 2966716 R 743299 CDS YP_004785434.1 344201108 11043688 complement(2967057..2967296) 1 NC_015942.1 PFAM: Transcription regulator AbrB/SpoV, predicted; KEGG: afr:AFE_1098 PemI family protein; transcriptional regulator/antitoxin, MazE 2967296 11043688 Acife_3035 Acidithiobacillus ferrivorans SS3 transcriptional regulator/antitoxin, MazE YP_004785434.1 2967057 R 743299 CDS YP_004785435.1 344201109 11043689 complement(2967379..2970438) 1 NC_015942.1 KEGG: afr:AFE_1097 conjugal transfer protein TraN, putative; conjugal transfer protein TraN 2970438 11043689 Acife_3036 Acidithiobacillus ferrivorans SS3 conjugal transfer protein TraN YP_004785435.1 2967379 R 743299 CDS YP_004785436.1 344201110 11044644 complement(2970442..2971701) 1 NC_015942.1 PFAM: TraU; KEGG: afr:AFE_1096 conjugal transfer protein TraU, putative; TraU family protein 2971701 11044644 Acife_3037 Acidithiobacillus ferrivorans SS3 TraU family protein YP_004785436.1 2970442 R 743299 CDS YP_004785437.1 344201111 11043690 complement(2971703..2972968) 1 NC_015942.1 PFAM: Type-F conjugative transfer system pilin assembly protein TrbC; KEGG: afr:AFE_1095 pilus assembly protein TraW, putative; type-F conjugative transfer system pilin assembly protein TrbC 2972968 11043690 Acife_3038 Acidithiobacillus ferrivorans SS3 type-F conjugative transfer system pilin assembly protein TrbC YP_004785437.1 2971703 R 743299 CDS YP_004785438.1 344201112 11044645 complement(2972965..2973765) 1 NC_015942.1 KEGG: afr:AFE_1094 hypothetical protein; hypothetical protein 2973765 11044645 Acife_3039 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785438.1 2972965 R 743299 CDS YP_004785439.1 344201113 11043691 complement(2973779..2974840) 1 NC_015942.1 manually curated; KEGG: afr:AFE_1093 hypothetical protein; hypothetical protein 2974840 11043691 Acife_3040 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785439.1 2973779 R 743299 CDS YP_004785440.1 344201114 11043692 complement(2974854..2975378) 1 NC_015942.1 PFAM: Peptidase S26, conserved region; KEGG: afr:AFE_1091 conjugation signal peptidase TraF, putative; peptidase S26 2975378 11043692 Acife_3041 Acidithiobacillus ferrivorans SS3 peptidase S26 YP_004785440.1 2974854 R 743299 CDS YP_004785441.1 344201115 11044646 complement(2975371..2975901) 1 NC_015942.1 KEGG: afr:AFE_1090 hypothetical protein; hypothetical protein 2975901 11044646 Acife_3042 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785441.1 2975371 R 743299 CDS YP_004785442.1 344201116 11043693 complement(2975898..2978492) 1 NC_015942.1 TIGRFAM: Type-IV secretion system protein TraC; KEGG: afr:AFE_1089 type-IV secretion system protein TraC; type-IV secretion system protein TraC 2978492 11043693 Acife_3043 Acidithiobacillus ferrivorans SS3 type-IV secretion system protein TraC YP_004785442.1 2975898 R 743299 CDS YP_004785443.1 344201117 11044647 complement(2978489..2979175) 1 NC_015942.1 KEGG: afr:AFE_1088 thiol:disulfide interchange protein, DsbA family; DsbA family thiol:disulfide interchange protein 2979175 11044647 Acife_3044 Acidithiobacillus ferrivorans SS3 DsbA family thiol:disulfide interchange protein YP_004785443.1 2978489 R 743299 CDS YP_004785444.1 344201118 11043694 complement(2979172..2980374) 1 NC_015942.1 PFAM: Type II secretion system protein E; KEGG: afr:AFE_1087 type II/IV secretion system protein; type II secretion system protein E 2980374 11043694 Acife_3045 Acidithiobacillus ferrivorans SS3 type II secretion system protein E YP_004785444.1 2979172 R 743299 CDS YP_004785445.1 344201119 11043695 complement(2980374..2981201) 1 NC_015942.1 KEGG: afr:AFE_1085 thiol:disulfide interchange domain protein; thiol:disulfide interchange domain-containing protein 2981201 11043695 Acife_3046 Acidithiobacillus ferrivorans SS3 thiol:disulfide interchange domain-containing protein YP_004785445.1 2980374 R 743299 CDS YP_004785446.1 344201120 11043696 complement(2981201..2981605) 1 NC_015942.1 KEGG: afr:AFE_1084 conjugal transfer protein TraA, putative; conjugal transfer protein TraA 2981605 11043696 Acife_3047 Acidithiobacillus ferrivorans SS3 conjugal transfer protein TraA YP_004785446.1 2981201 R 743299 CDS YP_004785447.1 344201121 11043697 complement(2981649..2982179) 1 NC_015942.1 KEGG: afr:AFE_1082 conjugal transfer protein TraV, putative; TIGRFAM: Type IV secretion system, TraV; PFAM: Type IV secretion system, TraV; type IV conjugative transfer system protein TraV 2982179 11043697 Acife_3048 Acidithiobacillus ferrivorans SS3 type IV conjugative transfer system protein TraV YP_004785447.1 2981649 R 743299 CDS YP_004785448.1 344201122 11044648 complement(2982176..2983735) 1 NC_015942.1 KEGG: afr:AFE_1081 conjugal transfer protein, putative; conjugal transfer protein 2983735 11044648 Acife_3049 Acidithiobacillus ferrivorans SS3 conjugal transfer protein YP_004785448.1 2982176 R 743299 CDS YP_004785449.1 344201123 11043698 complement(2983729..2984895) 1 NC_015942.1 KEGG: afr:AFE_1080 TraK lipoprotein, putative; TraK lipoprotein 2984895 11043698 Acife_3050 Acidithiobacillus ferrivorans SS3 TraK lipoprotein YP_004785449.1 2983729 R 743299 CDS YP_004785450.1 344201124 11043699 complement(2984892..2985500) 1 NC_015942.1 TIGRFAM: TraE; KEGG: afr:AFE_1079 type IV conjugative transfer system protein TraE; type IV conjugative transfer system protein TraE 2985500 11043699 Acife_3051 Acidithiobacillus ferrivorans SS3 type IV conjugative transfer system protein TraE YP_004785450.1 2984892 R 743299 CDS YP_004785451.1 344201125 11043700 complement(2985497..2985775) 1 NC_015942.1 TIGRFAM: Type IV conjugative transfer system protein TraL; KEGG: afr:AFE_1078 type IV conjugative transfer system protein TraL; type IV conjugative transfer system protein TraL 2985775 11043700 Acife_3052 Acidithiobacillus ferrivorans SS3 type IV conjugative transfer system protein TraL YP_004785451.1 2985497 R 743299 CDS YP_004785452.1 344201126 11043701 complement(2985763..2986530) 1 NC_015942.1 KEGG: afr:AFE_1077 hypothetical protein; hypothetical protein 2986530 11043701 Acife_3053 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785452.1 2985763 R 743299 CDS YP_004785453.1 344201127 11043702 complement(2986592..2987962) 1 NC_015942.1 KEGG: afr:AFE_1023 HNH endonuclease domain protein; PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease 2987962 11043702 Acife_3054 Acidithiobacillus ferrivorans SS3 HNH endonuclease YP_004785453.1 2986592 R 743299 CDS YP_004785454.1 344201128 11043703 complement(2988249..2988557) 1 NC_015942.1 KEGG: afr:AFE_1076 hypothetical protein; hypothetical protein 2988557 11043703 Acife_3055 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785454.1 2988249 R 743299 CDS YP_004785455.1 344201129 11044649 complement(2988560..2989708) 1 NC_015942.1 KEGG: afr:AFE_1075 hypothetical protein; hypothetical protein 2989708 11044649 Acife_3056 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785455.1 2988560 R 743299 CDS YP_004785456.1 344201130 11043704 complement(2989701..2989952) 1 NC_015942.1 KEGG: afr:AFE_1074 hypothetical protein; hypothetical protein 2989952 11043704 Acife_3057 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785456.1 2989701 R 743299 CDS YP_004785457.1 344201131 11043705 complement(2989942..2990292) 1 NC_015942.1 hypothetical protein 2990292 11043705 Acife_3058 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785457.1 2989942 R 743299 CDS YP_004785458.1 344201132 11043706 complement(2990351..2991376) 1 NC_015942.1 KEGG: afr:AFE_1249 hypothetical protein; hypothetical protein 2991376 11043706 Acife_3059 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785458.1 2990351 R 743299 CDS YP_004785459.1 344201133 11043707 2991546..2992394 1 NC_015942.1 KEGG: afr:AFE_1064 hypothetical protein; hypothetical protein 2992394 11043707 Acife_3060 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785459.1 2991546 D 743299 CDS YP_004785460.1 344201134 11043708 2992657..2994327 1 NC_015942.1 PFAM: CMP/dCMP deaminase, zinc-binding; KEGG: adn:Alide_0478 cmp/dcmp deaminase zinc-binding protein; zinc-binding CMP/dCMP deaminase 2994327 11043708 Acife_3061 Acidithiobacillus ferrivorans SS3 zinc-binding CMP/dCMP deaminase YP_004785460.1 2992657 D 743299 CDS YP_004785461.1 344201135 11043709 2994299..2994496 1 NC_015942.1 hypothetical protein 2994496 11043709 Acife_3062 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785461.1 2994299 D 743299 CDS YP_004785462.1 344201136 11043711 complement(2995063..2995686) 1 NC_015942.1 manually curated; KEGG: afr:AFE_1256 hypothetical protein; hypothetical protein 2995686 11043711 Acife_3064 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785462.1 2995063 R 743299 CDS YP_004785463.1 344201137 11043712 complement(2996012..2996389) 1 NC_015942.1 hypothetical protein 2996389 11043712 Acife_3065 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785463.1 2996012 R 743299 CDS YP_004785464.1 344201138 11043713 complement(2996386..2996649) 1 NC_015942.1 KEGG: afr:AFE_1021 hypothetical protein; hypothetical protein 2996649 11043713 Acife_3066 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785464.1 2996386 R 743299 CDS YP_004785465.1 344201139 11043714 complement(2996731..2998860) 1 NC_015942.1 TIGRFAM: DNA topoisomerase I, bacterial-type; PFAM: DNA topoisomerase, type IA, central; Toprim domain; KEGG: afr:AFE_1013 DNA topoisomerase I, putative; SMART: DNA topoisomerase, type IA, DNA-binding; DNA topoisomerase, type IA, domain 2; Toprim domain, subgroup; DNA topoisomerase I 2998860 11043714 Acife_3067 Acidithiobacillus ferrivorans SS3 DNA topoisomerase I YP_004785465.1 2996731 R 743299 CDS YP_004785466.1 344201140 11043715 complement(2998938..2999267) 1 NC_015942.1 KEGG: afr:AFE_1243 hypothetical protein; hypothetical protein 2999267 11043715 Acife_3068 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785466.1 2998938 R 743299 CDS YP_004785467.1 344201141 11044650 complement(2999309..2999674) 1 NC_015942.1 hypothetical protein 2999674 11044650 Acife_3069 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785467.1 2999309 R 743299 CDS YP_004785468.1 344201142 11043716 complement(2999646..3000911) 1 NC_015942.1 PFAM: LexA DNA-binding region; KEGG: bvi:Bcep1808_7375 hypothetical protein; LexA DNA-binding domain-containing protein 3000911 11043716 Acife_3070 Acidithiobacillus ferrivorans SS3 LexA DNA-binding domain-containing protein YP_004785468.1 2999646 R 743299 CDS YP_004785469.1 344201143 11043717 complement(3001162..3001383) 1 NC_015942.1 hypothetical protein 3001383 11043717 Acife_3071 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785469.1 3001162 R 743299 CDS YP_004785470.1 344201144 11043718 complement(3001383..3001628) 1 NC_015942.1 hypothetical protein 3001628 11043718 Acife_3072 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785470.1 3001383 R 743299 CDS YP_004785471.1 344201145 11044651 3001742..3002143 1 NC_015942.1 KEGG: cko:CKO_01905 hypothetical protein; hypothetical protein 3002143 11044651 Acife_3073 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785471.1 3001742 D 743299 CDS YP_004785472.1 344201146 11043719 3002386..3002655 1 NC_015942.1 PFAM: Prophage CP4-57 regulatory; KEGG: pst:PSPTO_3429 DNA-binding protein; phage transcriptional regulator AlpA 3002655 11043719 Acife_3074 Acidithiobacillus ferrivorans SS3 phage transcriptional regulator AlpA YP_004785472.1 3002386 D 743299 CDS YP_004785473.1 344201147 11044652 complement(3002662..3003843) 1 NC_015942.1 PFAM: Integrase, catalytic core, phage; KEGG: ddc:Dd586_3778 integrase family protein; integrase family protein 3003843 11044652 Acife_3075 Acidithiobacillus ferrivorans SS3 integrase family protein YP_004785473.1 3002662 R 743299 CDS YP_004785474.1 344201148 11043720 complement(3004093..3005031) 1 NC_015942.1 TIGRFAM: Glutathione synthetase, prokaryotic; HAMAP: Glutathione synthetase, prokaryotic; KEGG: afr:AFE_3063 glutathione synthetase; PFAM: Prokaryotic glutathione synthetase, ATP-binding; Prokaryotic glutathione synthetase, N-terminal; glutathione synthetase 3005031 11043720 Acife_3076 Acidithiobacillus ferrivorans SS3 glutathione synthetase YP_004785474.1 3004093 R 743299 CDS YP_004785475.1 344201149 11043721 complement(3005028..3006338) 1 NC_015942.1 KEGG: afr:AFE_3064 glutamate--cysteine ligase; TIGRFAM: Glutamate--cysteine ligase GshA; PFAM: Glutamate--cysteine ligase GshA; glutamate/cysteine ligase 3006338 11043721 Acife_3077 Acidithiobacillus ferrivorans SS3 glutamate/cysteine ligase YP_004785475.1 3005028 R 743299 CDS YP_004785476.1 344201150 11044653 complement(3006349..3007509) 1 NC_015942.1 KEGG: afr:AFE_3065 citrate synthase; TIGRFAM: 2-methylcitrate synthase/citrate synthase type I; PFAM: Citrate synthase-like; 2-methylcitrate synthase/citrate synthase II 3007509 11044653 Acife_3078 Acidithiobacillus ferrivorans SS3 2-methylcitrate synthase/citrate synthase II YP_004785476.1 3006349 R 743299 CDS YP_004785477.1 344201151 11043722 complement(3007654..3008028) 1 NC_015942.1 TIGRFAM: FeS cluster insertion; HAMAP: Iron--sulfur cluster insertion protein erpA; KEGG: afr:AFE_3067 iron-sulfur cluster assembly accessory protein; PFAM: FeS cluster biogenesis; iron--sulfur cluster insertion protein erpA 3008028 11043722 Acife_3079 Acidithiobacillus ferrivorans SS3 iron--sulfur cluster insertion protein erpA YP_004785477.1 3007654 R 743299 CDS YP_004785478.1 344201152 11044654 complement(3008179..3011124) 1 NC_015942.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 2-oxoacid dehydrogenase acyltransferase, catalytic domain; E3 binding; Biotin/lipoyl attachment; Pyridine nucleotide-disulphide oxidoreductase, dimerisation; KEGG: afr:AFE_3068 pyruvate dehydrogenase complex, E2 and E3 components; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 3011124 11044654 Acife_3080 Acidithiobacillus ferrivorans SS3 FAD-dependent pyridine nucleotide-disulfide oxidoreductase YP_004785478.1 3008179 R 743299 CDS YP_004785479.1 344201153 11043723 complement(3011225..3012205) 1 NC_015942.1 PFAM: Transketolase-like, pyrimidine-binding domain; Transketolase, C-terminal; KEGG: afr:AFE_3069 pyruvate dehydrogenase, E1 component, pyruvate dehydrogenase beta subunit; transketolase central region 3012205 11043723 Acife_3081 Acidithiobacillus ferrivorans SS3 transketolase central region YP_004785479.1 3011225 R 743299 CDS YP_004785480.1 344201154 11043724 complement(3012193..3013179) 1 NC_015942.1 KEGG: afr:AFE_3070 pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase alpha subunit; TIGRFAM: Pyruvate dehydrogenase (acetyl-transferring) E1 component, alpha subunit, subgroup y; PFAM: Dehydrogenase, E1 component; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 3013179 11043724 Acife_3082 Acidithiobacillus ferrivorans SS3 pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha YP_004785480.1 3012193 R 743299 CDS YP_004785481.1 344201155 11043725 complement(3013664..3014842) 1 NC_015942.1 KEGG: afe:Lferr_1890 hypothetical protein; hypothetical protein 3014842 11043725 Acife_3083 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785481.1 3013664 R 743299 CDS YP_004785482.1 344201156 11043726 complement(3015102..3015428) 1 NC_015942.1 KEGG: afr:AFE_3072 hypothetical protein; hypothetical protein 3015428 11043726 Acife_3084 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785482.1 3015102 R 743299 CDS YP_004785483.1 344201157 11044655 complement(3015681..3016715) 1 NC_015942.1 TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; HAMAP: N-acetyl-gamma-glutamyl-phosphate reductase; KEGG: afr:AFE_3073 N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase, NAD-binding; Semialdehyde dehydrogenase, dimerisation region; N-acetyl-gamma-glutamyl-phosphate reductase 3016715 11044655 Acife_3085 Acidithiobacillus ferrivorans SS3 N-acetyl-gamma-glutamyl-phosphate reductase YP_004785483.1 3015681 R 743299 CDS YP_004785484.1 344201158 11043727 complement(3016795..3017181) 1 NC_015942.1 PFAM: Ribosomal protein S9; KEGG: afr:AFE_3074 ribosomal protein S9; 30S ribosomal protein S9 3017181 11043727 Acife_3086 Acidithiobacillus ferrivorans SS3 30S ribosomal protein S9 YP_004785484.1 3016795 R 743299 CDS YP_004785485.1 344201159 11044656 complement(3017194..3017622) 1 NC_015942.1 KEGG: afr:AFE_3075 50S ribosomal protein L13; TIGRFAM: Ribosomal protein L13, bacterial-type; PFAM: Ribosomal protein L13; 50S ribosomal protein L13 3017622 11044656 Acife_3087 Acidithiobacillus ferrivorans SS3 50S ribosomal protein L13 YP_004785485.1 3017194 R 743299 CDS YP_004785486.1 344201160 11043728 complement(3017665..3017865) 1 NC_015942.1 KEGG: mca:MCA2653 hypothetical protein; hypothetical protein 3017865 11043728 Acife_3088 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785486.1 3017665 R 743299 CDS YP_004785487.1 344201161 11043729 complement(3017962..3018174) 1 NC_015942.1 KEGG: afr:AFE_3078 hypothetical protein; hypothetical protein 3018174 11043729 Acife_3089 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785487.1 3017962 R 743299 CDS YP_004785488.1 344201162 11044657 complement(3018261..3018860) 1 NC_015942.1 PFAM: Nitroreductase-like; KEGG: afr:AFE_3079 nitroreductase family protein; nitroreductase 3018860 11044657 Acife_3090 Acidithiobacillus ferrivorans SS3 nitroreductase YP_004785488.1 3018261 R 743299 CDS YP_004785489.1 344201163 11043730 3019168..3020334 1 NC_015942.1 KEGG: smt:Smal_1621 hypothetical protein; TIGRFAM: HI0933-like protein; PFAM: HI0933-like protein; hypothetical protein 3020334 11043730 Acife_3091 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785489.1 3019168 D 743299 CDS YP_004785490.1 344201164 11044659 complement(3025763..3026983) 1 NC_015942.1 SMART: RNA-binding S4; TIGRFAM: Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial; KEGG: afr:AFE_3085 tyrosyl-tRNA synthetase; HAMAP: Tyrosyl-tRNA synthetase; PFAM: Aminoacyl-tRNA synthetase, class Ib; RNA-binding S4; Tyrosyl-tRNA synthetase 3026983 11044659 Acife_3092 Acidithiobacillus ferrivorans SS3 Tyrosyl-tRNA synthetase YP_004785490.1 3025763 R 743299 CDS YP_004785491.1 344201165 11043735 complement(3027090..3029381) 1 NC_015942.1 KEGG: afr:AFE_3086 plasma-membrane proton-efflux P-type ATPase, putative; TIGRFAM: ATPase, P-type, K/Mg/Cd/Cu/Zn/Na/Ca/Na/H-transporter; PFAM: ATPase, P-type, ATPase-associated region; ATPase, P-type cation-transporter, N-terminal; Haloacid dehalogenase-like hydrolase; P-type HAD superfamily ATPase 3029381 11043735 Acife_3093 Acidithiobacillus ferrivorans SS3 P-type HAD superfamily ATPase YP_004785491.1 3027090 R 743299 CDS YP_004785492.1 344201166 11043736 3029506..3029625 1 NC_015942.1 hypothetical protein 3029625 11043736 Acife_3094 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785492.1 3029506 D 743299 CDS YP_004785493.1 344201167 11043737 3029622..3030005 1 NC_015942.1 TIGRFAM: Aspartate decarboxylase; HAMAP: Aspartate decarboxylase; KEGG: afr:AFE_3089 aspartate 1-decarboxylase; PFAM: Aspartate decarboxylase; aspartate 1-decarboxylase 3030005 11043737 Acife_3095 Acidithiobacillus ferrivorans SS3 aspartate 1-decarboxylase YP_004785493.1 3029622 D 743299 CDS YP_004785494.1 344201168 11043738 3030018..3031241 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_3090 hypothetical protein; major facilitator superfamily protein 3031241 11043738 Acife_3096 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004785494.1 3030018 D 743299 CDS YP_004785495.1 344201169 11043739 3031396..3032082 1 NC_015942.1 TIGRFAM: GTP-binding protein, ribosome biogenesis, YsxC; HAMAP: GTP-binding protein, ribosome biogenesis, YsxC; KEGG: afr:AFE_3092 ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein, HSR1-related; GTP-binding protein engB 3032082 11043739 Acife_3097 Acidithiobacillus ferrivorans SS3 GTP-binding protein engB YP_004785495.1 3031396 D 743299 CDS YP_004785496.1 344201170 11043740 3032148..3033410 1 NC_015942.1 PFAM: Ion transport 2; Regulator of K+ conductance, N-terminal; KEGG: afr:AFE_3093 voltage-gated potassium channel; Ion transport 2 domain-containing protein 3033410 11043740 Acife_3098 Acidithiobacillus ferrivorans SS3 Ion transport 2 domain-containing protein YP_004785496.1 3032148 D 743299 CDS YP_004785497.1 344201171 11044660 complement(3033413..3036112) 1 NC_015942.1 TIGRFAM: DNA polymerase 1; PFAM: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; 3'-5' exonuclease; KEGG: afr:AFE_3094 DNA polymerase I; SMART: DNA-directed DNA polymerase, family A, palm domain; 5'-3' exonuclease, N-terminal; Helix-hairpin-helix motif, class 2; 3'-5' exonuclease; DNA polymerase I 3036112 11044660 Acife_3099 Acidithiobacillus ferrivorans SS3 DNA polymerase I YP_004785497.1 3033413 R 743299 CDS YP_004785498.1 344201172 11043741 3036182..3036901 1 NC_015942.1 KEGG: afr:AFE_3095 conserved hypothetical protein TIGR00730; TIGRFAM: Conserved hypothetical protein CHP00730; PFAM: Conserved hypothetical protein CHP00730; hypothetical protein 3036901 11043741 Acife_3100 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785498.1 3036182 D 743299 CDS YP_004785499.1 344201173 11043742 3036922..3037257 1 NC_015942.1 KEGG: afr:AFE_3096 hypothetical protein; hypothetical protein 3037257 11043742 Acife_3101 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785499.1 3036922 D 743299 CDS YP_004785500.1 344201174 11043743 3037271..3038203 1 NC_015942.1 TIGRFAM: Homoserine kinase ThrB; HAMAP: Homoserine kinase; KEGG: afr:AFE_3097 homoserine kinase; PFAM: Aminoglycoside phosphotransferase; homoserine kinase 3038203 11043743 Acife_3102 Acidithiobacillus ferrivorans SS3 homoserine kinase YP_004785500.1 3037271 D 743299 CDS YP_004785501.1 344201175 11043744 complement(3038383..3038790) 1 NC_015942.1 KEGG: afr:AFE_3100 competence protein ComEA helix-hairpin-helix repeat protein; TIGRFAM: Competence protein ComEA, helix-hairpin-helix region; PFAM: Helix-hairpin-helix motif; competence protein ComEA helix-hairpin-helix repeat-containing protein 3038790 11043744 Acife_3103 Acidithiobacillus ferrivorans SS3 competence protein ComEA helix-hairpin-helix repeat-containing protein YP_004785501.1 3038383 R 743299 CDS YP_004785502.1 344201176 11044661 complement(3038808..3040937) 1 NC_015942.1 PFAM: DNA helicase, UvrD/REP type; KEGG: afr:AFE_3101 DNA helicase II; UvrD/REP helicase 3040937 11044661 Acife_3104 Acidithiobacillus ferrivorans SS3 UvrD/REP helicase YP_004785502.1 3038808 R 743299 CDS YP_004785503.1 344201177 11043745 3041053..3041991 1 NC_015942.1 KEGG: afr:AFE_3102 curved DNA-binding protein; PFAM: Chaperone DnaJ, C-terminal; Heat shock protein DnaJ, N-terminal; SMART: Heat shock protein DnaJ, N-terminal; chaperone DnaJ domain-containing protein 3041991 11043745 Acife_3105 Acidithiobacillus ferrivorans SS3 chaperone DnaJ domain-containing protein YP_004785503.1 3041053 D 743299 CDS YP_004785504.1 344201178 11043746 3042015..3042311 1 NC_015942.1 KEGG: afe:Lferr_2701 MerR family transcriptional regulator; MerR family transcriptional regulator 3042311 11043746 Acife_3106 Acidithiobacillus ferrivorans SS3 MerR family transcriptional regulator YP_004785504.1 3042015 D 743299 CDS YP_004785505.1 344201179 11043748 3042536..3044266 1 NC_015942.1 KEGG: afr:AFE_3104 DNA polymerase X family protein; PFAM: PHP, C-terminal; Nucleotidyltransferase; SMART: DNA-directed DNA polymerase, family X; Helix-hairpin-helix DNA-binding motif, class 1; Polymerase/histidinol phosphatase, N-terminal; PHP domain-containing protein 3044266 11043748 Acife_3108 Acidithiobacillus ferrivorans SS3 PHP domain-containing protein YP_004785505.1 3042536 D 743299 CDS YP_004785506.1 344201180 11043749 complement(3044326..3045192) 1 NC_015942.1 PFAM: Alpha/beta hydrolase fold-1; KEGG: afr:AFE_2217 hydrolase, alpha/beta hydrolase fold family; alpha/beta hydrolase fold domain-containing protein 3045192 11043749 Acife_3109 Acidithiobacillus ferrivorans SS3 alpha/beta hydrolase fold domain-containing protein YP_004785506.1 3044326 R 743299 CDS YP_004785507.1 344201181 11043750 complement(3045244..3045345) 1 NC_015942.1 hypothetical protein 3045345 11043750 Acife_3110 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785507.1 3045244 R 743299 CDS YP_004785508.1 344201182 11044662 complement(3045342..3046001) 1 NC_015942.1 PFAM: Negative transcriptional regulator; KEGG: afr:AFE_2006 transcriptional regulator, putative; FMN-binding negative transcriptional regulator 3046001 11044662 Acife_3111 Acidithiobacillus ferrivorans SS3 FMN-binding negative transcriptional regulator YP_004785508.1 3045342 R 743299 CDS YP_004785509.1 344201183 11043751 complement(3045988..3046659) 1 NC_015942.1 PFAM: Transglutaminase-like; KEGG: afr:AFE_2007 hypothetical protein; transglutaminase domain-containing protein 3046659 11043751 Acife_3112 Acidithiobacillus ferrivorans SS3 transglutaminase domain-containing protein YP_004785509.1 3045988 R 743299 CDS YP_004785510.1 344201184 11043752 complement(3046686..3047156) 1 NC_015942.1 PFAM: Polyketide cyclase/dehydrase; KEGG: afr:AFE_2804 hypothetical protein; polyketide cyclase/dehydrase 3047156 11043752 Acife_3113 Acidithiobacillus ferrivorans SS3 polyketide cyclase/dehydrase YP_004785510.1 3046686 R 743299 CDS YP_004785511.1 344201185 11044663 complement(3047156..3047701) 1 NC_015942.1 PFAM: NADPH-dependent FMN reductase; KEGG: afr:AFE_2803 FMN reductase, NADPH-dependent; NADPH-dependent FMN reductase 3047701 11044663 Acife_3114 Acidithiobacillus ferrivorans SS3 NADPH-dependent FMN reductase YP_004785511.1 3047156 R 743299 CDS YP_004785512.1 344201186 11043753 complement(3047787..3048269) 1 NC_015942.1 PFAM: GCN5-related N-acetyltransferase; KEGG: hna:Hneap_1663 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 3048269 11043753 Acife_3115 Acidithiobacillus ferrivorans SS3 GCN5-like N-acetyltransferase YP_004785512.1 3047787 R 743299 CDS YP_004785513.1 344201187 11043754 complement(3048354..3048683) 1 NC_015942.1 PFAM: Small multidrug resistance protein; KEGG: afr:AFE_2802 multidrug resistance protein, SMR family; small multidrug resistance protein 3048683 11043754 Acife_3116 Acidithiobacillus ferrivorans SS3 small multidrug resistance protein YP_004785513.1 3048354 R 743299 CDS YP_004785514.1 344201188 11043756 complement(3049285..3049713) 1 NC_015942.1 KEGG: mci:Mesci_1735 hypothetical protein; HAMAP: UPF0310 protein; PFAM: Uncharacterised protein family UPF0310; hypothetical protein 3049713 11043756 Acife_3118 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785514.1 3049285 R 743299 CDS YP_004785515.1 344201189 11044664 complement(3049710..3050081) 1 NC_015942.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: afe:Lferr_1669 hypothetical protein; glyoxalase/bleomycin resistance protein/dioxygenase 3050081 11044664 Acife_3119 Acidithiobacillus ferrivorans SS3 glyoxalase/bleomycin resistance protein/dioxygenase YP_004785515.1 3049710 R 743299 CDS YP_004785516.1 344201190 11044665 complement(3050182..3050871) 1 NC_015942.1 KEGG: rah:Rahaq_4788 transcriptional regulator; transcriptional regulator 3050871 11044665 Acife_3120 Acidithiobacillus ferrivorans SS3 transcriptional regulator YP_004785516.1 3050182 R 743299 CDS YP_004785517.1 344201191 11043757 complement(3050933..3051046) 1 NC_015942.1 hypothetical protein 3051046 11043757 Acife_3121 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785517.1 3050933 R 743299 CDS YP_004785518.1 344201192 11043758 3051250..3051510 1 NC_015942.1 PFAM: Protein of unknown function DUF1778; KEGG: app:CAP2UW1_4576 hypothetical protein; hypothetical protein 3051510 11043758 Acife_3122 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785518.1 3051250 D 743299 CDS YP_004785519.1 344201193 11044666 3051511..3052008 1 NC_015942.1 PFAM: GCN5-related N-acetyltransferase; KEGG: cyj:Cyan7822_5076 GCN5-like N-acetyltransferase; GCN5-like N-acetyltransferase 3052008 11044666 Acife_3123 Acidithiobacillus ferrivorans SS3 GCN5-like N-acetyltransferase YP_004785519.1 3051511 D 743299 CDS YP_004785520.1 344201194 11044667 3052005..3052388 1 NC_015942.1 KEGG: cch:Cag_1796 ankyrin; ankyrin 3052388 11044667 Acife_3124 Acidithiobacillus ferrivorans SS3 ankyrin YP_004785520.1 3052005 D 743299 CDS YP_004785521.1 344201195 11043759 complement(3052410..3052736) 1 NC_015942.1 KEGG: tbd:Tbd_2652 nitrogen regulatory protein P-II; nitrogen regulatory protein P-II 3052736 11043759 Acife_3125 Acidithiobacillus ferrivorans SS3 nitrogen regulatory protein P-II YP_004785521.1 3052410 R 743299 CDS YP_004785522.1 344201196 11043760 complement(3052733..3055897) 1 NC_015942.1 KEGG: nha:Nham_4323 hypothetical protein; HAMAP: UPF0753 protein; PFAM: Protein of unknown function DUF2309; hypothetical protein 3055897 11043760 Acife_3126 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785522.1 3052733 R 743299 CDS YP_004785523.1 344201197 11043761 complement(3055870..3056643) 1 NC_015942.1 KEGG: tbd:Tbd_2654 hypothetical protein; hypothetical protein 3056643 11043761 Acife_3127 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785523.1 3055870 R 743299 CDS YP_004785524.1 344201198 11043762 complement(3056645..3058333) 1 NC_015942.1 PFAM: NADH:ubiquinone/plastoquinone oxidoreductase; NADH:ubiquinone oxidoreductase, chain 5/L, N-terminal; KEGG: tbd:Tbd_2655 NADH dehydrogenase; NADH/Ubiquinone/plastoquinone (complex I) 3058333 11043762 Acife_3128 Acidithiobacillus ferrivorans SS3 NADH/Ubiquinone/plastoquinone (complex I) YP_004785524.1 3056645 R 743299 CDS YP_004785525.1 344201199 11043764 complement(3059032..3060213) 1 NC_015942.1 PFAM: Ketose-bisphosphate aldolase, class-II; Stress responsive alpha-beta barrel; KEGG: afe:Lferr_1374 ketose-bisphosphate aldolase class-II; ketose-bisphosphate aldolase class-II 3060213 11043764 Acife_3131 Acidithiobacillus ferrivorans SS3 ketose-bisphosphate aldolase class-II YP_004785525.1 3059032 R 743299 CDS YP_004785526.1 344201200 11043765 complement(3060339..3062690) 1 NC_015942.1 KEGG: afr:AFE_1677 von Willebrand factor type A domain protein; PFAM: von Willebrand factor, type A; SMART: von Willebrand factor, type A; von Willebrand factor type A 3062690 11043765 Acife_3132 Acidithiobacillus ferrivorans SS3 von Willebrand factor type A YP_004785526.1 3060339 R 743299 CDS YP_004785527.1 344201201 11043766 complement(3062706..3063509) 1 NC_015942.1 KEGG: afr:AFE_1678 p30 protein; p30 protein 3063509 11043766 Acife_3133 Acidithiobacillus ferrivorans SS3 p30 protein YP_004785527.1 3062706 R 743299 CDS YP_004785528.1 344201202 11044669 complement(3063540..3063794) 1 NC_015942.1 KEGG: afr:AFE_1679 hypothetical protein; hypothetical protein 3063794 11044669 Acife_3134 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785528.1 3063540 R 743299 CDS YP_004785529.1 344201203 11043767 complement(3063785..3064420) 1 NC_015942.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: afe:Lferr_1378 cobyrinic acid ac-diamide synthase; cobyrinic acid ac-diamide synthase 3064420 11043767 Acife_3135 Acidithiobacillus ferrivorans SS3 cobyrinic acid ac-diamide synthase YP_004785529.1 3063785 R 743299 CDS YP_004785530.1 344201204 11043768 complement(3064457..3064735) 1 NC_015942.1 KEGG: afr:AFE_1681 hypothetical protein; hypothetical protein 3064735 11043768 Acife_3136 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785530.1 3064457 R 743299 CDS YP_004785531.1 344201205 11043769 complement(3064732..3065175) 1 NC_015942.1 PFAM: Ferritin/Dps protein; KEGG: afr:AFE_1682 bacterioferritin; ferritin Dps family protein 3065175 11043769 Acife_3137 Acidithiobacillus ferrivorans SS3 ferritin Dps family protein YP_004785531.1 3064732 R 743299 CDS YP_004785532.1 344201206 11043770 complement(3065189..3065527) 1 NC_015942.1 PFAM: Microcompartment protein, bacteria; KEGG: afe:Lferr_1381 microcompartments protein; microcompartments protein 3065527 11043770 Acife_3138 Acidithiobacillus ferrivorans SS3 microcompartments protein YP_004785532.1 3065189 R 743299 CDS YP_004785533.1 344201207 11043771 complement(3065573..3065869) 1 NC_015942.1 PFAM: Microcompartment protein, bacteria; KEGG: afr:AFE_1684 carboxysome shell peptide; microcompartments protein 3065869 11043771 Acife_3139 Acidithiobacillus ferrivorans SS3 microcompartments protein YP_004785533.1 3065573 R 743299 CDS YP_004785534.1 344201208 11043772 complement(3065900..3066166) 1 NC_015942.1 KEGG: afr:AFE_1686 carboxysome peptide B; TIGRFAM: Carboxysome peptide B; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; carboxysome peptide B 3066166 11043772 Acife_3140 Acidithiobacillus ferrivorans SS3 carboxysome peptide B YP_004785534.1 3065900 R 743299 CDS YP_004785535.1 344201209 11043773 complement(3066177..3066425) 1 NC_015942.1 KEGG: afr:AFE_1687 carboxysome peptide A; TIGRFAM: Carboxysome peptide A; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; carboxysome peptide A 3066425 11043773 Acife_3141 Acidithiobacillus ferrivorans SS3 carboxysome peptide A YP_004785535.1 3066177 R 743299 CDS YP_004785536.1 344201210 11044670 complement(3066422..3068032) 1 NC_015942.1 KEGG: afr:AFE_1688 carboxysome shell carbonic anhydrase; TIGRFAM: Carboxysome shell carbonic anhydrase; PFAM: Carboxysome shell carbonic anhydrase; carboxysome shell carbonic anhydrase 3068032 11044670 Acife_3142 Acidithiobacillus ferrivorans SS3 carboxysome shell carbonic anhydrase YP_004785536.1 3066422 R 743299 CDS YP_004785537.1 344201211 11043774 complement(3068088..3070388) 1 NC_015942.1 KEGG: afe:Lferr_1387 carboxysome structural protein CsoS2; carboxysome structural protein CsoS2 3070388 11043774 Acife_3143 Acidithiobacillus ferrivorans SS3 carboxysome structural protein CsoS2 YP_004785537.1 3068088 R 743299 CDS YP_004785538.1 344201212 11043775 complement(3070459..3070791) 1 NC_015942.1 PFAM: Ribulose bisphosphate carboxylase, small chain; KEGG: afr:AFE_1690 ribulose bisphosphate carboxylase, small subunit; ribulose bisphosphate carboxylase small chain 3070791 11043775 Acife_3144 Acidithiobacillus ferrivorans SS3 ribulose bisphosphate carboxylase small chain YP_004785538.1 3070459 R 743299 CDS YP_004785539.1 344201213 11043776 complement(3070883..3072304) 1 NC_015942.1 KEGG: afr:AFE_1691 ribulose bisophosphate carboxylase; HAMAP: Ribulose bisphosphate carboxylase large chain; PFAM: Ribulose bisphosphate carboxylase, large subunit, C-terminal; Ribulose bisphosphate carboxylase, large subunit, N-terminal; ribulose bisphosphate carboxylase large chain 3072304 11043776 Acife_3145 Acidithiobacillus ferrivorans SS3 ribulose bisphosphate carboxylase large chain YP_004785539.1 3070883 R 743299 CDS YP_004785540.1 344201214 11043777 3072383..3073366 1 NC_015942.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afr:AFE_1692 rubisco operon transcriptional regulator; LysR family transcriptional regulator 3073366 11043777 Acife_3146 Acidithiobacillus ferrivorans SS3 LysR family transcriptional regulator YP_004785540.1 3072383 D 743299 CDS YP_004785541.1 344201215 11043778 complement(3074152..3074364) 1 NC_015942.1 KEGG: afr:AFE_0812 hypothetical protein; hypothetical protein 3074364 11043778 Acife_3147 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785541.1 3074152 R 743299 CDS YP_004785542.1 344201216 11043779 complement(3074453..3075031) 1 NC_015942.1 KEGG: afr:AFE_2734 hypothetical protein; hypothetical protein 3075031 11043779 Acife_3148 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785542.1 3074453 R 743299 CDS YP_004785543.1 344201217 11044671 complement(3075063..3076460) 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_0813 major facilitator family transporter; major facilitator superfamily protein 3076460 11044671 Acife_3149 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004785543.1 3075063 R 743299 CDS YP_004785544.1 344201218 11044672 complement(3076918..3077811) 1 NC_015942.1 PFAM: Chloride channel, voltage gated; KEGG: afr:AFE_0814 voltage-gated chloride channel; Cl- channel voltage-gated family protein 3077811 11044672 Acife_3150 Acidithiobacillus ferrivorans SS3 Cl- channel voltage-gated family protein YP_004785544.1 3076918 R 743299 CDS YP_004785545.1 344201219 11043780 complement(3077825..3079672) 1 NC_015942.1 PFAM: Chloride channel, voltage gated; KEGG: afe:Lferr_0957 chloride channel core protein; Cl- channel voltage-gated family protein 3079672 11043780 Acife_3151 Acidithiobacillus ferrivorans SS3 Cl- channel voltage-gated family protein YP_004785545.1 3077825 R 743299 CDS YP_004785546.1 344201220 11043781 3079763..3080686 1 NC_015942.1 PFAM: LysR, substrate-binding; HTH transcriptional regulator, LysR; KEGG: afe:Lferr_0958 LysR family transcriptional regulator; LysR family transcriptional regulator 3080686 11043781 Acife_3152 Acidithiobacillus ferrivorans SS3 LysR family transcriptional regulator YP_004785546.1 3079763 D 743299 CDS YP_004785547.1 344201221 11044673 complement(3080977..3082116) 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: afe:Lferr_1533 major facilitator superfamily protein; major facilitator superfamily protein 3082116 11044673 Acife_3154 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004785547.1 3080977 R 743299 CDS YP_004785548.1 344201222 11043783 complement(3082113..3083630) 1 NC_015942.1 PFAM: Glucose-methanol-choline oxidoreductase, C-terminal; FAD dependent oxidoreductase; KEGG: afe:Lferr_1534 FAD dependent oxidoreductase; GMC oxidoreductase 3083630 11043783 Acife_3155 Acidithiobacillus ferrivorans SS3 GMC oxidoreductase YP_004785548.1 3082113 R 743299 CDS YP_004785549.1 344201223 11043784 complement(3083633..3084418) 1 NC_015942.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_2225 glucose 1-dehydrogenase, putative; short-chain dehydrogenase/reductase SDR 3084418 11043784 Acife_3156 Acidithiobacillus ferrivorans SS3 short-chain dehydrogenase/reductase SDR YP_004785549.1 3083633 R 743299 CDS YP_004785550.1 344201224 11043785 complement(3084415..3086778) 1 NC_015942.1 PFAM: Glucodextranase N; Glycoside hydrolase 15-related; KEGG: afr:AFE_2224 glycosyl hydrolase, family 15; glucodextranase N 3086778 11043785 Acife_3157 Acidithiobacillus ferrivorans SS3 glucodextranase N YP_004785550.1 3084415 R 743299 CDS YP_004785551.1 344201225 11043786 complement(3087015..3089612) 1 NC_015942.1 TIGRFAM: Diguanylate cyclase, predicted; Twin-arginine translocation pathway, signal sequence; PFAM: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; KEGG: dar:Daro_3990 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); SMART: Diguanylate phosphodiesterase, predicted; Diguanylate cyclase, predicted; diguanylate cyclase/phosphodiesterase 3089612 11043786 Acife_3158 Acidithiobacillus ferrivorans SS3 diguanylate cyclase/phosphodiesterase YP_004785551.1 3087015 R 743299 CDS YP_004785552.1 344201226 11043788 3090275..3091048 1 NC_015942.1 KEGG: ana:alr7162 hypothetical protein; hypothetical protein 3091048 11043788 Acife_3160 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785552.1 3090275 D 743299 CDS YP_004785553.1 344201227 11043789 complement(3091436..3092944) 1 NC_015942.1 PFAM: Major facilitator superfamily MFS-1; KEGG: afr:AFE_0922 drug resistance transporter, EmrB/QacA family; major facilitator superfamily protein 3092944 11043789 Acife_3161 Acidithiobacillus ferrivorans SS3 major facilitator superfamily protein YP_004785553.1 3091436 R 743299 CDS YP_004785554.1 344201228 11043790 3093228..3094286 1 NC_015942.1 PFAM: Uncharacterised conserved protein UCP012641; KEGG: hna:Hneap_2071 protein of unknown function UCP012641; hypothetical protein 3094286 11043790 Acife_3162 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785554.1 3093228 D 743299 CDS YP_004785555.1 344201229 11043791 complement(3095504..3095764) 1 NC_015942.1 KEGG: afr:AFE_3174 prevent-host-death family protein; prevent-host-death family protein 3095764 11043791 Acife_3165 Acidithiobacillus ferrivorans SS3 prevent-host-death family protein YP_004785555.1 3095504 R 743299 CDS YP_004785556.1 344201230 11043792 complement(3096015..3096899) 1 NC_015942.1 KEGG: pna:Pnap_0429 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core; integrase catalytic subunit 3096899 11043792 Acife_3166 Acidithiobacillus ferrivorans SS3 integrase catalytic subunit YP_004785556.1 3096015 R 743299 CDS YP_004785557.1 344201231 11043793 complement(3096896..3097183) 1 NC_015942.1 PFAM: Transposase IS3/IS911; KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 3097183 11043793 Acife_3167 Acidithiobacillus ferrivorans SS3 transposase IS3/IS911 family protein YP_004785557.1 3096896 R 743299 CDS YP_004785558.1 344201232 11044676 3097853..3098248 1 NC_015942.1 manually curated; KEGG: afe:Lferr_0145 transposase family protein; transposase family protein 3098248 11044676 Acife_3169 Acidithiobacillus ferrivorans SS3 transposase family protein YP_004785558.1 3097853 D 743299 CDS YP_004785559.1 344201233 11043795 complement(3098353..3098898) 1 NC_015942.1 KEGG: afr:AFE_0876 hypothetical protein; hypothetical protein 3098898 11043795 Acife_3170 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785559.1 3098353 R 743299 CDS YP_004785560.1 344201234 11044677 complement(3099231..3100115) 1 NC_015942.1 KEGG: pna:Pnap_0429 integrase catalytic subunit; manually curated; PFAM: Integrase, catalytic core; integrase catalytic subunit 3100115 11044677 Acife_3171 Acidithiobacillus ferrivorans SS3 integrase catalytic subunit YP_004785560.1 3099231 R 743299 CDS YP_004785561.1 344201235 11044678 complement(3100112..3100399) 1 NC_015942.1 PFAM: Transposase IS3/IS911; KEGG: app:CAP2UW1_0203 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 3100399 11044678 Acife_3172 Acidithiobacillus ferrivorans SS3 transposase IS3/IS911 family protein YP_004785561.1 3100112 R 743299 CDS YP_004785562.1 344201236 11043797 3102851..3103711 1 NC_015942.1 KEGG: bph:Bphy_5150 extracellular solute-binding protein; PFAM: Extracellular solute-binding protein, family 3; SMART: Extracellular solute-binding protein, family 3; ABC transporter substrate-binding protein 3103711 11043797 Acife_3174 Acidithiobacillus ferrivorans SS3 ABC transporter substrate-binding protein YP_004785562.1 3102851 D 743299 CDS YP_004785563.1 344201237 11043798 3103727..3105298 1 NC_015942.1 TIGRFAM: Amino acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine; PFAM: ABC transporter-like; Binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_6505 ABC transporter permease/ATP-binding protein; SMART: ATPase, AAA+ type, core; polar amino acid ABC transporter permease 3105298 11043798 Acife_3175 Acidithiobacillus ferrivorans SS3 polar amino acid ABC transporter permease YP_004785563.1 3103727 D 743299 CDS YP_004785564.1 344201238 11043799 3105404..3105796 1 NC_015942.1 PFAM: Endoribonuclease L-PSP; KEGG: toc:Toce_1804 endoribonuclease L-PSP; endoribonuclease L-PSP 3105796 11043799 Acife_3176 Acidithiobacillus ferrivorans SS3 endoribonuclease L-PSP YP_004785564.1 3105404 D 743299 CDS YP_004785565.1 344201239 11044679 3105834..3106868 1 NC_015942.1 PFAM: Acetamidase/Formamidase; KEGG: pla:Plav_0982 acetamidase/formamidase; acetamidase/formamidase 3106868 11044679 Acife_3177 Acidithiobacillus ferrivorans SS3 acetamidase/formamidase YP_004785565.1 3105834 D 743299 CDS YP_004785566.1 344201240 11043800 complement(3106907..3107113) 1 NC_015942.1 hypothetical protein 3107113 11043800 Acife_3178 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785566.1 3106907 R 743299 CDS YP_004785567.1 344201241 11043801 3107204..3107998 1 NC_015942.1 PFAM: Protein of unknown function DUF81; KEGG: afr:AFE_0764 hypothetical protein; hypothetical protein 3107998 11043801 Acife_3179 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785567.1 3107204 D 743299 CDS YP_004785568.1 344201242 11043802 3108074..3108520 1 NC_015942.1 manually curated; PFAM: Transcription regulator, AsnC-type, C-terminal; KEGG: tcx:Tcr_1418 AsnC family transcriptional regulator; SMART: Transcription regulator, AsnC-type; AsnC family transcriptional regulator 3108520 11043802 Acife_3180 Acidithiobacillus ferrivorans SS3 AsnC family transcriptional regulator YP_004785568.1 3108074 D 743299 CDS YP_004785569.1 344201243 11044680 3108540..3108908 1 NC_015942.1 hypothetical protein 3108908 11044680 Acife_3181 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785569.1 3108540 D 743299 CDS YP_004785570.1 344201244 11044681 3109116..3113666 1 NC_015942.1 KEGG: tmz:Tmz1t_3166 hypothetical protein; hypothetical protein 3113666 11044681 Acife_3182 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785570.1 3109116 D 743299 CDS YP_004785571.1 344201245 11043803 complement(3113947..3115125) 1 NC_015942.1 KEGG: ppg:PputGB1_1616 beta-lactamase domain-containing protein; beta-lactamase domain-containing protein 3115125 11043803 Acife_3183 Acidithiobacillus ferrivorans SS3 beta-lactamase domain-containing protein YP_004785571.1 3113947 R 743299 CDS YP_004785572.1 344201246 11043804 complement(3115257..3115979) 1 NC_015942.1 SMART: Protein phosphatase 2C-related; KEGG: bae:BATR1942_05675 phosphorylated protein phosphatase; protein serine/threonine phosphatase 3115979 11043804 Acife_3184 Acidithiobacillus ferrivorans SS3 protein serine/threonine phosphatase YP_004785572.1 3115257 R 743299 CDS YP_004785573.1 344201247 11043805 complement(3115976..3117313) 1 NC_015942.1 KEGG: mmb:Mmol_0663 serine/threonine protein kinase; PFAM: Tyrosine-protein kinase, catalytic domain; SMART: Serine/threonine-protein kinase domain; Tyrosine-protein kinase, subgroup, catalytic domain; serine/threonine protein kinase 3117313 11043805 Acife_3185 Acidithiobacillus ferrivorans SS3 serine/threonine protein kinase YP_004785573.1 3115976 R 743299 CDS YP_004785574.1 344201248 11044682 3117577..3117714 1 NC_015942.1 hypothetical protein 3117714 11044682 Acife_3186 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785574.1 3117577 D 743299 CDS YP_004785575.1 344201249 11043806 complement(3117731..3119575) 1 NC_015942.1 TIGRFAM: Glucosamine-fructose-6-phosphate aminotransferase, isomerising; HAMAP: Glucosamine--fructose-6-phosphate aminotransferase [isomerizing]; KEGG: afr:AFE_3200 glucosamine--fructose-6-phosphate aminotransferase, isomerizing; PFAM: Glutamine amidotransferase, class-II; Sugar isomerase (SIS); glucosamine--fructose-6-phosphate aminotransferase 3119575 11043806 Acife_3187 Acidithiobacillus ferrivorans SS3 glucosamine--fructose-6-phosphate aminotransferase YP_004785575.1 3117731 R 743299 CDS YP_004785576.1 344201250 11043807 complement(3119622..3120989) 1 NC_015942.1 TIGRFAM: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; HAMAP: Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase; KEGG: afr:AFE_3201 UDP-N-acetylglucosamine pyrophosphorylase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; Bacterial transferase hexapeptide repeat; bifunctional protein glmU 3120989 11043807 Acife_3188 Acidithiobacillus ferrivorans SS3 bifunctional protein glmU YP_004785576.1 3119622 R 743299 CDS YP_004785577.1 344201251 11043808 complement(3121121..3121546) 1 NC_015942.1 TIGRFAM: ATPase, F1 complex, delta/epsilon subunit; HAMAP: ATPase, F1 complex, delta/epsilon subunit; KEGG: afr:AFE_3202 F0F1 ATP synthase subunit epsilon; PFAM: ATPase, F1 complex, delta/epsilon subunit, N-terminal; ATPase, F1 complex, delta/epsilon subunit, C-terminal; ATP synthase subunit epsilon 3121546 11043808 Acife_3189 Acidithiobacillus ferrivorans SS3 ATP synthase subunit epsilon YP_004785577.1 3121121 R 743299 CDS YP_004785578.1 344201252 11043809 complement(3121550..3122959) 1 NC_015942.1 SMART: ATPase, AAA+ type, core; TIGRFAM: ATPase, F1 complex, beta subunit; KEGG: afr:AFE_3203 ATP synthase F1, beta subunit; HAMAP: ATPase, F1 complex, beta subunit; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATP synthase subunit beta 3122959 11043809 Acife_3190 Acidithiobacillus ferrivorans SS3 ATP synthase subunit beta YP_004785578.1 3121550 R 743299 CDS YP_004785579.1 344201253 11044683 complement(3123001..3123867) 1 NC_015942.1 TIGRFAM: ATPase, F1 complex, gamma subunit; HAMAP: ATP synthase gamma chain; KEGG: afr:AFE_3204 F0F1 ATP synthase subunit gamma; PFAM: ATPase, F1 complex, gamma subunit; ATP synthase subunit gamma 3123867 11044683 Acife_3191 Acidithiobacillus ferrivorans SS3 ATP synthase subunit gamma YP_004785579.1 3123001 R 743299 CDS YP_004785580.1 344201254 11043810 complement(3123877..3125421) 1 NC_015942.1 TIGRFAM: ATPase, F1 complex, alpha subunit; HAMAP: ATPase, F1 complex, alpha subunit; KEGG: afr:AFE_3205 F0F1 ATP synthase subunit alpha; PFAM: ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain; ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal; ATPase, F1/V1/A1 complex, alpha/beta subunit, C-terminal; ATP synthase subunit alpha 3125421 11043810 Acife_3192 Acidithiobacillus ferrivorans SS3 ATP synthase subunit alpha YP_004785580.1 3123877 R 743299 CDS YP_004785581.1 344201255 11043811 complement(3125438..3125977) 1 NC_015942.1 TIGRFAM: ATPase, F1 complex, OSCP/delta subunit; HAMAP: ATPase, F1 complex, OSCP/delta subunit; KEGG: afr:AFE_3206 ATP synthase F1, delta subunit; PFAM: ATPase, F1 complex, OSCP/delta subunit; ATP synthase subunit delta 3125977 11043811 Acife_3193 Acidithiobacillus ferrivorans SS3 ATP synthase subunit delta YP_004785581.1 3125438 R 743299 CDS YP_004785582.1 344201256 11043812 complement(3125988..3126467) 1 NC_015942.1 TIGRFAM: ATPase, F0 complex, subunit B, bacterial; HAMAP: ATP synthase subunit b; KEGG: afr:AFE_3207 ATP synthase F0, B subunit; PFAM: ATPase, F0 complex, subunit B/B', bacterial/chloroplast; ATP synthase subunit b 3126467 11043812 Acife_3194 Acidithiobacillus ferrivorans SS3 ATP synthase subunit b YP_004785582.1 3125988 R 743299 CDS YP_004785583.1 344201257 11043813 complement(3126510..3126764) 1 NC_015942.1 TIGRFAM: ATPase, F0 complex, subunit C, bacterial/chloroplast; HAMAP: ATPase, F0 complex, subunit C; KEGG: afr:AFE_3208 ATP synthase F0, C subunit; PFAM: ATPase, F0/V0 complex, subunit C; ATP synthase subunit c 3126764 11043813 Acife_3195 Acidithiobacillus ferrivorans SS3 ATP synthase subunit c YP_004785583.1 3126510 R 743299 CDS YP_004785584.1 344201258 11043814 complement(3126807..3127556) 1 NC_015942.1 TIGRFAM: ATPase, F0 complex, subunit A; HAMAP: ATP synthase subunit a; KEGG: afr:AFE_3209 ATP synthase F0, A subunit; PFAM: ATPase, F0 complex, subunit A; ATP synthase subunit a 3127556 11043814 Acife_3196 Acidithiobacillus ferrivorans SS3 ATP synthase subunit a YP_004785584.1 3126807 R 743299 CDS YP_004785585.1 344201259 11044684 complement(3127559..3127930) 1 NC_015942.1 KEGG: afr:AFE_3210 hypothetical protein; hypothetical protein 3127930 11044684 Acife_3197 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785585.1 3127559 R 743299 CDS YP_004785586.1 344201260 11043815 complement(3128021..3128869) 1 NC_015942.1 TIGRFAM: ParB-like partition protein; PFAM: ParB-like nuclease; KEGG: afr:AFE_3211 ParB family protein; SMART: ParB-like nuclease; parB-like partition protein 3128869 11043815 Acife_3198 Acidithiobacillus ferrivorans SS3 parB-like partition protein YP_004785586.1 3128021 R 743299 CDS YP_004785587.1 344201261 11043816 complement(3128866..3129648) 1 NC_015942.1 PFAM: Cobyrinic acid a,c-diamide synthase; KEGG: afr:AFE_3212 chromosome partitioning protein ParA; cobyrinic acid ac-diamide synthase 3129648 11043816 Acife_3199 Acidithiobacillus ferrivorans SS3 cobyrinic acid ac-diamide synthase YP_004785587.1 3128866 R 743299 CDS YP_004785588.1 344201262 11043817 complement(3129716..3130357) 1 NC_015942.1 TIGRFAM: rRNA small subunit methyltransferase G; HAMAP: rRNA small subunit methyltransferase G; KEGG: afr:AFE_3213 methyltransferase GidB; PFAM: rRNA small subunit methyltransferase G; ribosomal RNA small subunit methyltransferase G 3130357 11043817 Acife_3200 Acidithiobacillus ferrivorans SS3 ribosomal RNA small subunit methyltransferase G YP_004785588.1 3129716 R 743299 CDS YP_004785589.1 344201263 11043818 complement(3130363..3132237) 1 NC_015942.1 TIGRFAM: Glucose-inhibited division protein A; HAMAP: Glucose-inhibited division protein A; KEGG: afr:AFE_3214 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; PFAM: Glucose-inhibited division protein A-related; tRNA uridine 5-carboxymethylaminomethyl modification protein MnmG 3132237 11043818 Acife_3201 Acidithiobacillus ferrivorans SS3 tRNA uridine 5-carboxymethylaminomethyl modification protein MnmG YP_004785589.1 3130363 R 743299 CDS YP_004785590.1 344201264 11043819 complement(3132245..3132700) 1 NC_015942.1 KEGG: afr:AFE_3215 lipoprotein, putative; lipoprotein 3132700 11043819 Acife_3202 Acidithiobacillus ferrivorans SS3 lipoprotein YP_004785590.1 3132245 R 743299 CDS YP_004785591.1 344201265 11043820 complement(3132694..3133233) 1 NC_015942.1 PFAM: Methyltransferase type 12; KEGG: afr:AFE_3216 hypothetical protein; type 12 methyltransferase 3133233 11043820 Acife_3203 Acidithiobacillus ferrivorans SS3 type 12 methyltransferase YP_004785591.1 3132694 R 743299 CDS YP_004785592.1 344201266 11044685 complement(3133244..3133786) 1 NC_015942.1 KEGG: afr:AFE_3217 molybdenum cofactor biosynthesis protein B; TIGRFAM: Molybdenum cofactor biosynthesis protein B, proteobacteria; Molybdenum cofactor synthesis; PFAM: Molybdopterin binding; molybdenum cofactor biosynthesis protein B 3133786 11044685 Acife_3204 Acidithiobacillus ferrivorans SS3 molybdenum cofactor biosynthesis protein B YP_004785592.1 3133244 R 743299 CDS YP_004785593.1 344201267 11043821 3133933..3134862 1 NC_015942.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: afr:AFE_3218 magnesium and cobalt transport protein, putative; Mg2 transporter protein CorA family protein 3134862 11043821 Acife_3205 Acidithiobacillus ferrivorans SS3 Mg2 transporter protein CorA family protein YP_004785593.1 3133933 D 743299 CDS YP_004785594.1 344201268 11043822 3134893..3135834 1 NC_015942.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: afr:AFE_3219 magnesium and cobalt transport protein, putative; Mg2 transporter protein CorA family protein 3135834 11043822 Acife_3206 Acidithiobacillus ferrivorans SS3 Mg2 transporter protein CorA family protein YP_004785594.1 3134893 D 743299 CDS YP_004785595.1 344201269 11043823 3135844..3136743 1 NC_015942.1 KEGG: afr:AFE_3220 hypothetical protein; hypothetical protein 3136743 11043823 Acife_3207 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785595.1 3135844 D 743299 CDS YP_004785596.1 344201270 11043824 3136754..3137668 1 NC_015942.1 PFAM: Mg2+ transporter protein, CorA-like; KEGG: afe:Lferr_2825 Mg2 transporter protein CorA family protein; Mg2 transporter protein CorA family protein 3137668 11043824 Acife_3208 Acidithiobacillus ferrivorans SS3 Mg2 transporter protein CorA family protein YP_004785596.1 3136754 D 743299 CDS YP_004785597.1 344201271 11044686 3137831..3138400 1 NC_015942.1 PFAM: Isoprenylcysteine carboxyl methyltransferase; KEGG: afr:AFE_2216 hypothetical protein; Isoprenylcysteine carboxyl methyltransferase 3138400 11044686 Acife_3209 Acidithiobacillus ferrivorans SS3 Isoprenylcysteine carboxyl methyltransferase YP_004785597.1 3137831 D 743299 CDS YP_004785598.1 344201272 11044687 complement(3138406..3139638) 1 NC_015942.1 PFAM: Cysteine-rich region, CCG; 4Fe-4S ferredoxin, iron-sulphur binding, subgroup; KEGG: afr:AFE_1663 glycolate oxidase, iron-sulfur subunit; hypothetical protein 3139638 11044687 Acife_3210 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785598.1 3138406 R 743299 CDS YP_004785599.1 344201273 11043825 complement(3139648..3140712) 1 NC_015942.1 PFAM: FAD linked oxidase, N-terminal; FAD-linked oxidase, C-terminal; KEGG: afr:AFE_1664 glycolate oxidase FAD binding subunit; FAD linked oxidase domain-containing protein 3140712 11043825 Acife_3211 Acidithiobacillus ferrivorans SS3 FAD linked oxidase domain-containing protein YP_004785599.1 3139648 R 743299 CDS YP_004785600.1 344201274 11043826 complement(3140714..3142213) 1 NC_015942.1 PFAM: FAD-linked oxidase, C-terminal; FAD linked oxidase, N-terminal; KEGG: afe:Lferr_1362 D-lactate dehydrogenase (cytochrome); FAD linked oxidase domain-containing protein 3142213 11043826 Acife_3212 Acidithiobacillus ferrivorans SS3 FAD linked oxidase domain-containing protein YP_004785600.1 3140714 R 743299 CDS YP_004785601.1 344201275 11043827 complement(3142158..3143489) 1 NC_015942.1 PFAM: Protein of unknown function, DUF1537; KEGG: afr:AFE_1666 hypothetical protein; type III effector Hrp-dependent outer protein 3143489 11043827 Acife_3213 Acidithiobacillus ferrivorans SS3 type III effector Hrp-dependent outer protein YP_004785601.1 3142158 R 743299 CDS YP_004785602.1 344201276 11043828 complement(3143501..3145720) 1 NC_015942.1 PFAM: Transketolase-like, pyrimidine-binding domain; KEGG: afe:Lferr_1364 transketolase central region; transketolase central region 3145720 11043828 Acife_3214 Acidithiobacillus ferrivorans SS3 transketolase central region YP_004785602.1 3143501 R 743299 CDS YP_004785603.1 344201277 11044688 3145817..3146608 1 NC_015942.1 KEGG: afr:AFE_1668 transcriptional regulator, IclR family; PFAM: Transcriptional regulator IclR, N-terminal; Transcriptional regulator IclR, C-terminal; SMART: Transcriptional regulator IclR, N-terminal; IclR family transcriptional regulator 3146608 11044688 Acife_3215 Acidithiobacillus ferrivorans SS3 IclR family transcriptional regulator YP_004785603.1 3145817 D 743299 CDS YP_004785604.1 344201278 11044689 3146747..3147007 1 NC_015942.1 KEGG: gur:Gura_4195 hypothetical protein; hypothetical protein 3147007 11044689 Acife_3216 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785604.1 3146747 D 743299 CDS YP_004785605.1 344201279 11043829 3146962..3147294 1 NC_015942.1 PFAM: Protein of unknown function DUF2442; KEGG: afe:Lferr_0674 hypothetical protein; hypothetical protein 3147294 11043829 Acife_3217 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785605.1 3146962 D 743299 CDS YP_004785606.1 344201280 11043830 complement(3147514..3149559) 1 NC_015942.1 PFAM: Glycosyl transferase, group 1; Glycosyl transferase, family 2; KEGG: dia:Dtpsy_0558 group 1 glycosyl transferase; group 1 glycosyl transferase 3149559 11043830 Acife_3218 Acidithiobacillus ferrivorans SS3 group 1 glycosyl transferase YP_004785606.1 3147514 R 743299 CDS YP_004785607.1 344201281 11043831 complement(3149581..3150114) 1 NC_015942.1 PFAM: GCN5-related N-acetyltransferase; KEGG: dat:HRM2_25220 putative acetyltransferase (GNAT-family protein); GCN5-like N-acetyltransferase 3150114 11043831 Acife_3219 Acidithiobacillus ferrivorans SS3 GCN5-like N-acetyltransferase YP_004785607.1 3149581 R 743299 CDS YP_004785608.1 344201282 11043832 complement(3150062..3150331) 1 NC_015942.1 PFAM: Protein of unknown function DUF1778; KEGG: tau:Tola_0700 hypothetical protein; hypothetical protein 3150331 11043832 Acife_3220 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785608.1 3150062 R 743299 CDS YP_004785609.1 344201283 11043834 complement(3150702..3151892) 1 NC_015942.1 PFAM: Transposase (putative), IS66 Orf2 like; Transposase, IS66; KEGG: afe:Lferr_1326 transposase IS66; IS66 Orf2 family protein 3151892 11043834 Acife_3222 Acidithiobacillus ferrivorans SS3 IS66 Orf2 family protein YP_004785609.1 3150702 R 743299 CDS YP_004785610.1 344201284 11043835 complement(3151968..3152321) 1 NC_015942.1 hypothetical protein 3152321 11043835 Acife_3223 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785610.1 3151968 R 743299 CDS YP_004785611.1 344201285 11043836 3152957..3154648 1 NC_015942.1 KEGG: gpb:HDN1F_35290 RNA-directed DNA polymerase (reverse transcriptase); PFAM: RNA-directed DNA polymerase (reverse transcriptase); Group II intron, maturase-specific; HNH endonuclease; SMART: HNH nuclease; RNA-directed DNA polymerase 3154648 11043836 Acife_3224 Acidithiobacillus ferrivorans SS3 RNA-directed DNA polymerase YP_004785611.1 3152957 D 743299 CDS YP_004785612.1 344201286 11043839 complement(3156018..3157154) 1 NC_015942.1 KEGG: aca:ACP_0693 glycosyl transferase, group 2 family; manually curated; PFAM: Glycosyl transferase, family 2; family 2 glycosyl transferase 3157154 11043839 Acife_3227 Acidithiobacillus ferrivorans SS3 family 2 glycosyl transferase YP_004785612.1 3156018 R 743299 CDS YP_004785613.1 344201287 11043840 complement(3157278..3158258) 1 NC_015942.1 KEGG: afr:AFE_1342 UDP-glucose 4-epimerase; TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; UDP-glucose 4-epimerase 3158258 11043840 Acife_3228 Acidithiobacillus ferrivorans SS3 UDP-glucose 4-epimerase YP_004785613.1 3157278 R 743299 CDS YP_004785614.1 344201288 11044690 complement(3158258..3160315) 1 NC_015942.1 KEGG: eha:Ethha_0741 hypothetical protein; hypothetical protein 3160315 11044690 Acife_3229 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785614.1 3158258 R 743299 CDS YP_004785615.1 344201289 11044691 complement(3160349..3161293) 1 NC_015942.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: bph:Bphy_2297 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 3161293 11044691 Acife_3230 Acidithiobacillus ferrivorans SS3 NAD-dependent epimerase/dehydratase YP_004785615.1 3160349 R 743299 CDS YP_004785616.1 344201290 11043841 complement(3161290..3164022) 1 NC_015942.1 PFAM: Rhamnan synthesis F; Glycosyl transferase, group 1; KEGG: nmu:Nmul_A2403 glycosyl transferase, group 1; Rhamnan synthesis F 3164022 11043841 Acife_3231 Acidithiobacillus ferrivorans SS3 Rhamnan synthesis F YP_004785616.1 3161290 R 743299 CDS YP_004785617.1 344201291 11043842 complement(3164015..3165046) 1 NC_015942.1 KEGG: met:M446_6083 hypothetical protein; hypothetical protein 3165046 11043842 Acife_3232 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785617.1 3164015 R 743299 CDS YP_004785618.1 344201292 11044692 complement(3165246..3165950) 1 NC_015942.1 KEGG: cre:CHLREDRAFT_196838 O-methyltransferase; hypothetical protein 3165950 11044692 Acife_3233 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785618.1 3165246 R 743299 CDS YP_004785619.1 344201293 11043844 complement(3166457..3166855) 1 NC_015942.1 PFAM: GtrA-like protein; KEGG: brh:RBRH_03111 hypothetical protein; GtrA family protein 3166855 11043844 Acife_3235 Acidithiobacillus ferrivorans SS3 GtrA family protein YP_004785619.1 3166457 R 743299 CDS YP_004785620.1 344201294 11043845 complement(3166834..3167853) 1 NC_015942.1 PFAM: Glycosyl transferase, family 2; KEGG: bgf:BC1003_0767 glycosyl transferase family 2; family 2 glycosyl transferase 3167853 11043845 Acife_3236 Acidithiobacillus ferrivorans SS3 family 2 glycosyl transferase YP_004785620.1 3166834 R 743299 CDS YP_004785621.1 344201295 11043846 complement(3167850..3170588) 1 NC_015942.1 PFAM: Protein of unknown function, membrane YfhO; KEGG: bgf:BC1003_0768 hypothetical protein; hypothetical protein 3170588 11043846 Acife_3237 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785621.1 3167850 R 743299 CDS YP_004785622.1 344201296 11043847 complement(3170585..3173926) 1 NC_015942.1 PFAM: Glycosyl transferase, family 2; Methyltransferase type 12; KEGG: bph:Bphy_2296 glycosyl transferase family protein; family 2 glycosyl transferase 3173926 11043847 Acife_3238 Acidithiobacillus ferrivorans SS3 family 2 glycosyl transferase YP_004785622.1 3170585 R 743299 CDS YP_004785623.1 344201297 11043848 complement(3174131..3174880) 1 NC_015942.1 KEGG: pst:PSPTO_0705 O-antigen ABC transporter ATP-binding protein; PFAM: ABC transporter-like; SMART: ATPase, AAA+ type, core; ABC transporter 3174880 11043848 Acife_3239 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004785623.1 3174131 R 743299 CDS YP_004785624.1 344201298 11043849 complement(3174880..3175689) 1 NC_015942.1 PFAM: ABC-2 type transporter; KEGG: pst:PSPTO_0704 O-antigen ABC transporter permease; ABC transporter 3175689 11043849 Acife_3240 Acidithiobacillus ferrivorans SS3 ABC transporter YP_004785624.1 3174880 R 743299 CDS YP_004785625.1 344201299 11044693 3175860..3176156 1 NC_015942.1 TIGRFAM: Prevent-host-death protein; prevent-host-death family protein 3176156 11044693 Acife_3241 Acidithiobacillus ferrivorans SS3 prevent-host-death family protein YP_004785625.1 3175860 D 743299 CDS YP_004785626.1 344201300 11044694 3176192..3176437 1 NC_015942.1 hypothetical protein 3176437 11044694 Acife_3242 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785626.1 3176192 D 743299 CDS YP_004785627.1 344201301 11043850 3176434..3176871 1 NC_015942.1 hypothetical protein 3176871 11043850 Acife_3243 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785627.1 3176434 D 743299 CDS YP_004785628.1 344201302 11043851 complement(3177165..3177449) 1 NC_015942.1 PFAM: Protein of unknown function DUF1778; KEGG: bpa:BPP0379 hypothetical protein; hypothetical protein 3177449 11043851 Acife_3244 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785628.1 3177165 R 743299 CDS YP_004785629.1 344201303 11043852 complement(3177421..3177660) 1 NC_015942.1 hypothetical protein 3177660 11043852 Acife_3245 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785629.1 3177421 R 743299 CDS YP_004785630.1 344201304 11043853 complement(3177803..3178129) 1 NC_015942.1 PFAM: PemK-like protein; KEGG: xfa:XFa0027 plasmid maintenance protein; transcriptional modulator of MazE/toxin, MazF 3178129 11043853 Acife_3246 Acidithiobacillus ferrivorans SS3 transcriptional modulator of MazE/toxin, MazF YP_004785630.1 3177803 R 743299 CDS YP_004785631.1 344201305 11044695 complement(3178116..3178346) 1 NC_015942.1 KEGG: xfa:XFa0028 hypothetical protein; hypothetical protein 3178346 11044695 Acife_3247 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785631.1 3178116 R 743299 CDS YP_004785632.1 344201306 11044696 complement(3178542..3179063) 1 NC_015942.1 PFAM: GCN5-related N-acetyltransferase; KEGG: eba:ebA5964 GCN5-related N-acetyltransferase; GCN5-like N-acetyltransferase 3179063 11044696 Acife_3248 Acidithiobacillus ferrivorans SS3 GCN5-like N-acetyltransferase YP_004785632.1 3178542 R 743299 CDS YP_004785633.1 344201307 11043854 complement(3179060..3179353) 1 NC_015942.1 PFAM: Protein of unknown function DUF1778; KEGG: pna:Pnap_1572 hypothetical protein; hypothetical protein 3179353 11043854 Acife_3249 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785633.1 3179060 R 743299 CDS YP_004785634.1 344201308 11043855 complement(3179411..3180553) 1 NC_015942.1 KEGG: afr:AFE_0441 dTDP-glucose 4,6-dehydratase; TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-glucose 4,6-dehydratase 3180553 11043855 Acife_3250 Acidithiobacillus ferrivorans SS3 dTDP-glucose 4,6-dehydratase YP_004785634.1 3179411 R 743299 CDS YP_004785635.1 344201309 11043856 complement(3180573..3181469) 1 NC_015942.1 KEGG: afr:AFE_0442 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; dTDP-4-dehydrorhamnose reductase 3181469 11043856 Acife_3251 Acidithiobacillus ferrivorans SS3 dTDP-4-dehydrorhamnose reductase YP_004785635.1 3180573 R 743299 CDS YP_004785636.1 344201310 11043857 complement(3181466..3182014) 1 NC_015942.1 KEGG: afr:AFE_3294 dTDP-4-dehydrorhamnose 3,5-epimerase; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 3182014 11043857 Acife_3252 Acidithiobacillus ferrivorans SS3 dTDP-4-dehydrorhamnose 3,5-epimerase YP_004785636.1 3181466 R 743299 CDS YP_004785637.1 344201311 11044697 complement(3182011..3182895) 1 NC_015942.1 KEGG: afr:AFE_3295 glucose-1-phosphate thymidylyltransferase; TIGRFAM: Glucose-1-phosphate thymidylyltransferase, long form; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase 3182895 11044697 Acife_3253 Acidithiobacillus ferrivorans SS3 glucose-1-phosphate thymidylyltransferase YP_004785637.1 3182011 R 743299 CDS YP_004785638.1 344201312 11043858 3183105..3184481 1 NC_015942.1 PFAM: General substrate transporter; KEGG: afr:AFE_3296 major facilitator family transporter; general substrate transporter 3184481 11043858 Acife_3254 Acidithiobacillus ferrivorans SS3 general substrate transporter YP_004785638.1 3183105 D 743299 CDS YP_004785639.1 344201313 11043859 complement(3184495..3185196) 1 NC_015942.1 KEGG: afr:AFE_3297 TonB family protein; TonB family protein 3185196 11043859 Acife_3255 Acidithiobacillus ferrivorans SS3 TonB family protein YP_004785639.1 3184495 R 743299 CDS YP_004785640.1 344201314 11043860 complement(3185193..3186185) 1 NC_015942.1 PFAM: Tetrapyrrole biosynthesis, porphobilinogen synthase; KEGG: afr:AFE_3298 delta-aminolevulinic acid dehydratase; delta-aminolevulinic acid dehydratase 3186185 11043860 Acife_3256 Acidithiobacillus ferrivorans SS3 delta-aminolevulinic acid dehydratase YP_004785640.1 3185193 R 743299 CDS YP_004785641.1 344201315 11043861 complement(3186182..3186970) 1 NC_015942.1 PFAM: Tetrapyrrole biosynthesis, uroporphyrinogen III synthase; KEGG: afr:AFE_3299 uroporphyrinogen-III synthase; uroporphyrinogen III synthase HEM4 3186970 11043861 Acife_3257 Acidithiobacillus ferrivorans SS3 uroporphyrinogen III synthase HEM4 YP_004785641.1 3186182 R 743299 CDS YP_004785642.1 344201316 11043862 complement(3186967..3187887) 1 NC_015942.1 TIGRFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; HAMAP: Porphobilinogen deaminase; KEGG: afr:AFE_3300 porphobilinogen deaminase; PFAM: Tetrapyrrole biosynthesis, hydroxymethylbilane synthase; porphobilinogen deaminase 3187887 11043862 Acife_3258 Acidithiobacillus ferrivorans SS3 porphobilinogen deaminase YP_004785642.1 3186967 R 743299 CDS YP_004785643.1 344201317 11043863 complement(3187935..3188264) 1 NC_015942.1 KEGG: afe:Lferr_2899 putative comEA-like protein; putative comEA-like protein 3188264 11043863 Acife_3259 Acidithiobacillus ferrivorans SS3 putative comEA-like protein YP_004785643.1 3187935 R 743299 CDS YP_004785644.1 344201318 11043864 complement(3188293..3188688) 1 NC_015942.1 PFAM: Histidine triad (HIT) protein; KEGG: afr:AFE_3302 HIT family protein; histidine triad (HIT) protein 3188688 11043864 Acife_3260 Acidithiobacillus ferrivorans SS3 histidine triad (HIT) protein YP_004785644.1 3188293 R 743299 CDS YP_004785645.1 344201319 11043865 complement(3188685..3189977) 1 NC_015942.1 TIGRFAM: Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase; HAMAP: Glutamate-1-semialdehyde 2,1-aminomutase; KEGG: afr:AFE_3303 glutamate-1-semialdehyde aminotransferase; PFAM: Aminotransferase class-III; glutamate-1-semialdehyde 2,1-aminomutase 3189977 11043865 Acife_3261 Acidithiobacillus ferrivorans SS3 glutamate-1-semialdehyde 2,1-aminomutase YP_004785645.1 3188685 R 743299 CDS YP_004785646.1 344201320 11044698 complement(3189980..3190633) 1 NC_015942.1 TIGRFAM: Thiamine monophosphate synthase; HAMAP: Thiamine-phosphate pyrophosphorylase; KEGG: afr:AFE_3304 thiamine-phosphate pyrophosphorylase; PFAM: Thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 3190633 11044698 Acife_3262 Acidithiobacillus ferrivorans SS3 thiamine-phosphate pyrophosphorylase YP_004785646.1 3189980 R 743299 CDS YP_004785647.1 344201321 11043866 complement(3190633..3191475) 1 NC_015942.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: afr:AFE_3305 phosphomethylpyrimidine kinase, putative; phosphomethylpyrimidine kinase type-1 3191475 11043866 Acife_3263 Acidithiobacillus ferrivorans SS3 phosphomethylpyrimidine kinase type-1 YP_004785647.1 3190633 R 743299 CDS YP_004785648.1 344201322 11043867 complement(3191485..3191940) 1 NC_015942.1 KEGG: afr:AFE_2733 hypothetical protein; hypothetical protein 3191940 11043867 Acife_3264 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785648.1 3191485 R 743299 CDS YP_004785649.1 344201323 11044699 complement(3192316..3192804) 1 NC_015942.1 KEGG: afe:Lferr_2754 cytochrome c-like protein; hypothetical protein 3192804 11044699 Acife_3265 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785649.1 3192316 R 743299 CDS YP_004785650.1 344201324 11044700 complement(3193031..3193345) 1 NC_015942.1 KEGG: afr:AFE_2732 iron oxidase; iron oxidase 3193345 11044700 Acife_3266 Acidithiobacillus ferrivorans SS3 iron oxidase YP_004785650.1 3193031 R 743299 CDS YP_004785651.1 344201325 11043868 complement(3193403..3194101) 1 NC_015942.1 PFAM: Cytochrome c1; KEGG: afr:AFE_2731 ubiquinol--cytochrome c reductase, cytochrome c1 subunit; cytochrome c1 3194101 11043868 Acife_3267 Acidithiobacillus ferrivorans SS3 cytochrome c1 YP_004785651.1 3193403 R 743299 CDS YP_004785652.1 344201326 11043869 complement(3194124..3195338) 1 NC_015942.1 PFAM: Cytochrome b/b6, N-terminal; Cytochrome b/b6, C-terminal; KEGG: afr:AFE_2730 ubiquinol--cytochrome c reductase, cytochrome b subunit; cytochrome b/b6 domain-containing protein 3195338 11043869 Acife_3268 Acidithiobacillus ferrivorans SS3 cytochrome b/b6 domain-containing protein YP_004785652.1 3194124 R 743299 CDS YP_004785653.1 344201327 11043870 complement(3195366..3195986) 1 NC_015942.1 KEGG: afr:AFE_2729 ubiquinol--cytochrome c reductase, iron-sulfur subunit; TIGRFAM: Ubiquinol-cytochrome c reductase, iron-sulphur subunit; Twin-arginine translocation pathway, signal sequence; PFAM: Rieske [2Fe-2S] iron-sulphur domain; ubiquinol-cytochrome c reductase, iron-sulfur subunit 3195986 11043870 Acife_3269 Acidithiobacillus ferrivorans SS3 ubiquinol-cytochrome c reductase, iron-sulfur subunit YP_004785653.1 3195366 R 743299 CDS YP_004785654.1 344201328 11043871 complement(3196017..3196826) 1 NC_015942.1 PFAM: Short-chain dehydrogenase/reductase SDR; KEGG: afr:AFE_2728 oxidoreductase, short-chain dehydrogenase/reductase family; short-chain dehydrogenase/reductase SDR 3196826 11043871 Acife_3270 Acidithiobacillus ferrivorans SS3 short-chain dehydrogenase/reductase SDR YP_004785654.1 3196017 R 743299 CDS YP_004785655.1 344201329 11044701 complement(3196832..3197575) 1 NC_015942.1 PFAM: Cytochrome c, class I; KEGG: afe:Lferr_2349 cytochrome c class I; cytochrome c class I 3197575 11044701 Acife_3271 Acidithiobacillus ferrivorans SS3 cytochrome c class I YP_004785655.1 3196832 R 743299 CDS YP_004785656.1 344201330 11043872 complement(3198195..3199376) 1 NC_015942.1 PFAM: 2-nitropropane dioxygenase, NPD; KEGG: afe:Lferr_2347 2-nitropropane dioxygenase NPD; 2-nitropropane dioxygenase NPD 3199376 11043872 Acife_3273 Acidithiobacillus ferrivorans SS3 2-nitropropane dioxygenase NPD YP_004785656.1 3198195 R 743299 CDS YP_004785657.1 344201331 11043873 3199481..3199990 1 NC_015942.1 PFAM: Sterol-binding; KEGG: afr:AFE_2724 hypothetical protein; Sterol-binding domain-containing protein 3199990 11043873 Acife_3274 Acidithiobacillus ferrivorans SS3 Sterol-binding domain-containing protein YP_004785657.1 3199481 D 743299 CDS YP_004785658.1 344201332 11043874 3200058..3201071 1 NC_015942.1 PFAM: Peptidase U32; KEGG: afr:AFE_2723 peptidase, U32 family; peptidase U32 3201071 11043874 Acife_3275 Acidithiobacillus ferrivorans SS3 peptidase U32 YP_004785658.1 3200058 D 743299 CDS YP_004785659.1 344201333 11043876 3202124..3203653 1 NC_015942.1 PFAM: Protein of unknown function DUF116; Biotin/lipoate A/B protein ligase; KEGG: afr:AFE_2721 lipoate-protein ligase A, putative; hypothetical protein 3203653 11043876 Acife_3277 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785659.1 3202124 D 743299 CDS YP_004785660.1 344201334 11043877 complement(3203674..3204399) 1 NC_015942.1 manually curated; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic-like; KEGG: afr:AFE_2720 anaerobic ribonucleoside-triphosphate reductase, beta subunit; PFAM: Radical SAM; anaerobic ribonucleoside-triphosphate reductase activating protein 3204399 11043877 Acife_3278 Acidithiobacillus ferrivorans SS3 anaerobic ribonucleoside-triphosphate reductase activating protein YP_004785660.1 3203674 R 743299 CDS YP_004785661.1 344201335 11043878 complement(3204412..3204618) 1 NC_015942.1 KEGG: afr:AFE_2719 hypothetical protein; hypothetical protein 3204618 11043878 Acife_3279 Acidithiobacillus ferrivorans SS3 hypothetical protein YP_004785661.1 3204412 R 743299 CDS YP_004785662.1 344201336 11043879 complement(3204638..3206665) 1 NC_015942.1 KEGG: afr:AFE_2718 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: Ribonucleoside-triphosphate reductase, anaerobic; PFAM: ATP-cone; anaerobic ribonucleoside-triphosphate reductase 3206665 11043879 Acife_3280 Acidithiobacillus ferrivorans SS3 anaerobic ribonucleoside-triphosphate reductase YP_004785662.1 3204638 R 743299 CDS