-- dump date 20140618_184751 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 349163000001 SEQ_END SEQ_END NC_009467.1 203589 203589 DR NC_009467.1; contig end 203589..203589 Acidiphilium cryptum JF-5 349163000002 SEQ_END SEQ_END NC_009468.1 187422 187422 DR NC_009468.1; contig end 187422..187422 Acidiphilium cryptum JF-5 349163000003 SEQ_END SEQ_END NC_009469.1 88953 88953 DR NC_009469.1; contig end 88953..88953 Acidiphilium cryptum JF-5 349163000004 SEQ_END SEQ_END NC_009470.1 37415 37415 DR NC_009470.1; contig end 37415..37415 Acidiphilium cryptum JF-5 349163000005 SEQ_END SEQ_END NC_009471.1 37155 37155 DR NC_009471.1; contig end 37155..37155 Acidiphilium cryptum JF-5 349163000006 SEQ_END SEQ_END NC_009472.1 8781 8781 DR NC_009472.1; contig end 8781..8781 Acidiphilium cryptum JF-5 349163000007 SEQ_END SEQ_END NC_009473.1 5629 5629 DR NC_009473.1; contig end 5629..5629 Acidiphilium cryptum JF-5 349163000008 SEQ_END SEQ_END NC_009474.1 4909 4909 DR NC_009474.1; contig end 4909..4909 Acidiphilium cryptum JF-5 349163000009 SEQ_END SEQ_END NC_009484.1 3389227 3389227 DR NC_009484.1; contig end 3389227..3389227 Acidiphilium cryptum JF-5 YP_001219876.1 CDS Acry_3105 NC_009467.1 155 2215 D hypothetical protein 155..2215 Acidiphilium cryptum JF-5 5158917 YP_001219877.1 CDS Acry_3106 NC_009467.1 2212 2889 D TIGRFAM: heavy metal response regulator; PFAM: response regulator receiver; transcriptional regulator domain protein; two component heavy metal response transcriptional regulator 2212..2889 Acidiphilium cryptum JF-5 5158911 YP_001219878.1 CDS Acry_3107 NC_009467.1 2918 4261 D TIGRFAM: heavy metal sensor kinase; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; heavy metal sensor signal transduction histidine kinase 2918..4261 Acidiphilium cryptum JF-5 5158981 YP_001219879.1 CDS Acry_3108 NC_009467.1 4361 5737 D PFAM: outer membrane efflux protein; outer membrane efflux protein 4361..5737 Acidiphilium cryptum JF-5 5158975 YP_001219880.1 CDS Acry_3109 NC_009467.1 5734 6660 D hypothetical protein 5734..6660 Acidiphilium cryptum JF-5 5159026 YP_001219881.1 CDS Acry_3110 NC_009467.1 6670 9771 D PFAM: acriflavin resistance protein; acriflavin resistance protein 6670..9771 Acidiphilium cryptum JF-5 5159078 YP_001219882.1 CDS Acry_3111 NC_009467.1 9868 10911 D PFAM: transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 9868..10911 Acidiphilium cryptum JF-5 5159029 YP_001219883.1 CDS Acry_3112 NC_009467.1 11140 11562 R hypothetical protein complement(11140..11562) Acidiphilium cryptum JF-5 5159010 YP_001219884.1 CDS Acry_3113 NC_009467.1 11943 12653 R transposase complement(11943..12653) Acidiphilium cryptum JF-5 5159064 YP_001219885.1 CDS Acry_3114 NC_009467.1 12788 13297 D transposase 12788..13297 Acidiphilium cryptum JF-5 5159079 YP_001219886.1 CDS Acry_3115 NC_009467.1 13423 13941 D hypothetical protein 13423..13941 Acidiphilium cryptum JF-5 5159074 YP_001219887.1 CDS Acry_3116 NC_009467.1 14156 15196 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein complement(14156..15196) Acidiphilium cryptum JF-5 5158952 YP_001219888.1 CDS Acry_3118 NC_009467.1 15617 16633 R PFAM: transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein complement(15617..16633) Acidiphilium cryptum JF-5 5159097 YP_001219889.1 CDS Acry_3119 NC_009467.1 16732 16851 D hypothetical protein 16732..16851 Acidiphilium cryptum JF-5 5158976 YP_001219890.1 CDS Acry_3121 NC_009467.1 18245 18490 D hypothetical protein 18245..18490 Acidiphilium cryptum JF-5 5158922 YP_001219891.1 CDS Acry_3122 NC_009467.1 18463 18711 R hypothetical protein complement(18463..18711) Acidiphilium cryptum JF-5 5159095 YP_001219892.1 CDS Acry_3123 NC_009467.1 18695 20044 R PFAM: Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA complement(18695..20044) Acidiphilium cryptum JF-5 5159094 YP_001219893.1 CDS Acry_3124 NC_009467.1 22309 22620 D hypothetical protein 22309..22620 Acidiphilium cryptum JF-5 5159096 YP_001219894.1 CDS Acry_3125 NC_009467.1 22631 23713 R PFAM: transposase, IS4 family protein; transposase, IS4 family protein complement(22631..23713) Acidiphilium cryptum JF-5 5159069 YP_001219895.1 CDS Acry_3126 NC_009467.1 23752 24960 R PFAM: transposase, mutator type; transposase, mutator type complement(23752..24960) Acidiphilium cryptum JF-5 5159013 YP_001219896.1 CDS Acry_3127 NC_009467.1 25032 25379 R hypothetical protein complement(25032..25379) Acidiphilium cryptum JF-5 5159009 YP_001219897.1 CDS Acry_3128 NC_009467.1 25666 26469 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase complement(25666..26469) Acidiphilium cryptum JF-5 5159025 YP_001219898.1 CDS Acry_3129 NC_009467.1 26466 26924 R hypothetical protein complement(26466..26924) Acidiphilium cryptum JF-5 5159070 YP_001219899.1 CDS Acry_3130 NC_009467.1 26921 27385 R PFAM: DoxX family protein; DoxX family protein complement(26921..27385) Acidiphilium cryptum JF-5 5159071 YP_001219900.1 CDS Acry_3131 NC_009467.1 27401 27583 R hypothetical protein complement(27401..27583) Acidiphilium cryptum JF-5 5159006 YP_001219901.1 CDS Acry_3132 NC_009467.1 27999 29513 R Enables the enzymatic reduction of mercuric ions to elemental mercury; mercuric reductase complement(27999..29513) Acidiphilium cryptum JF-5 5159068 YP_001219902.1 CDS Acry_3133 NC_009467.1 29516 30799 R hypothetical protein complement(29516..30799) Acidiphilium cryptum JF-5 5159018 YP_001219903.1 CDS Acry_3134 NC_009467.1 30805 32238 R PFAM: glycoside hydrolase, family 39; glycoside hydrolase family protein complement(30805..32238) Acidiphilium cryptum JF-5 5159080 YP_001219904.1 CDS Acry_3135 NC_009467.1 32235 33797 R PFAM: glucose-methanol-choline oxidoreductase; FAD dependent oxidoreductase; GMC oxidoreductase; glucose-methanol-choline oxidoreductase complement(32235..33797) Acidiphilium cryptum JF-5 5159081 YP_001219905.1 CDS Acry_3136 NC_009467.1 33803 34612 R PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(33803..34612) Acidiphilium cryptum JF-5 5159076 YP_001219906.1 CDS Acry_3137 NC_009467.1 35025 35339 D hypothetical protein 35025..35339 Acidiphilium cryptum JF-5 5159077 YP_001219907.1 CDS Acry_3138 NC_009467.1 35500 35841 R hypothetical protein complement(35500..35841) Acidiphilium cryptum JF-5 5159022 YP_001219908.1 CDS Acry_3139 NC_009467.1 35854 44382 D PFAM: putative carbohydrate binding; glycosyltransferase 36; glycosyltransferase 36 associated; glycosyltransferase 36 35854..44382 Acidiphilium cryptum JF-5 5159073 YP_001219909.1 CDS Acry_3140 NC_009467.1 44516 45322 R PFAM: transposase, IS4 family protein; transposase, IS4 family protein complement(44516..45322) Acidiphilium cryptum JF-5 5159008 YP_001219910.1 CDS Acry_3141 NC_009467.1 45389 45715 R hypothetical protein complement(45389..45715) Acidiphilium cryptum JF-5 5159082 YP_001219911.1 CDS Acry_3143 NC_009467.1 46128 47306 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; cyclopropane-fatty-acyl-phospholipid synthase complement(46128..47306) Acidiphilium cryptum JF-5 5159056 YP_001219912.1 CDS Acry_3145 NC_009467.1 48369 50351 R PFAM: protein of unknown function UPF0118; hypothetical protein complement(48369..50351) Acidiphilium cryptum JF-5 5159061 YP_001219913.1 CDS Acry_3146 NC_009467.1 50396 51322 R TIGRFAM: esterase, PHB depolymerase family; PHB depolymerase family esterase complement(50396..51322) Acidiphilium cryptum JF-5 5159072 YP_001219914.1 CDS Acry_3147 NC_009467.1 51819 51989 R PFAM: CsbD family protein; CsbD family protein complement(51819..51989) Acidiphilium cryptum JF-5 5158984 YP_001219915.1 CDS Acry_3148 NC_009467.1 52424 52981 R PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator complement(52424..52981) Acidiphilium cryptum JF-5 5159048 YP_001219916.1 CDS Acry_3149 NC_009467.1 53133 53585 D hypothetical protein 53133..53585 Acidiphilium cryptum JF-5 5159062 YP_001219917.1 CDS Acry_3150 NC_009467.1 53739 54068 R hypothetical protein complement(53739..54068) Acidiphilium cryptum JF-5 5159023 YP_001219918.1 CDS Acry_3151 NC_009467.1 54440 54811 D hypothetical protein 54440..54811 Acidiphilium cryptum JF-5 5159005 YP_001219919.1 CDS Acry_3152 NC_009467.1 55010 55282 R hypothetical protein complement(55010..55282) Acidiphilium cryptum JF-5 5159067 YP_001219920.1 CDS Acry_3153 NC_009467.1 55649 55996 D hypothetical protein 55649..55996 Acidiphilium cryptum JF-5 5159012 YP_001219921.1 CDS Acry_3154 NC_009467.1 56015 57064 D hypothetical protein 56015..57064 Acidiphilium cryptum JF-5 5159017 YP_001219922.1 CDS Acry_3155 NC_009467.1 57098 58138 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 57098..58138 Acidiphilium cryptum JF-5 5159019 YP_001219923.1 CDS Acry_3156 NC_009467.1 58472 59488 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 58472..59488 Acidiphilium cryptum JF-5 5159027 YP_001219924.1 CDS Acry_3158 NC_009467.1 60649 61905 R FOG: Transposase-like protein; transposase complement(60649..61905) Acidiphilium cryptum JF-5 5158983 YP_001219925.1 CDS Acry_3159 NC_009467.1 62033 62305 D hypothetical protein 62033..62305 Acidiphilium cryptum JF-5 5159075 YP_001219926.1 CDS Acry_3160 NC_009467.1 64741 65721 D PFAM: Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 64741..65721 Acidiphilium cryptum JF-5 5159085 YP_001219927.1 CDS Acry_3161 NC_009467.1 65815 67458 D PFAM: transposase, IS4 family protein; transposase, IS4 family protein 65815..67458 Acidiphilium cryptum JF-5 5159087 YP_001219928.1 CDS Acry_3162 NC_009467.1 67582 68019 D PFAM: Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 67582..68019 Acidiphilium cryptum JF-5 5159031 YP_001219929.1 CDS Acry_3163 NC_009467.1 68003 68251 D hypothetical protein 68003..68251 Acidiphilium cryptum JF-5 5159032 YP_001219930.1 CDS Acry_3164 NC_009467.1 68806 69588 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein complement(68806..69588) Acidiphilium cryptum JF-5 5159086 YP_001219931.1 CDS Acry_3166 NC_009467.1 70523 71398 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein complement(70523..71398) Acidiphilium cryptum JF-5 5159034 YP_001219932.1 CDS Acry_3167 NC_009467.1 71395 72924 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(71395..72924) Acidiphilium cryptum JF-5 5159084 YP_001219933.1 CDS Acry_3168 NC_009467.1 74089 75303 R hypothetical protein complement(74089..75303) Acidiphilium cryptum JF-5 5159030 YP_001219934.1 CDS Acry_3169 NC_009467.1 75372 79709 D PFAM: CheB methylesterase; MCP methyltransferase, CheR-type; regulatory protein, LuxR; response regulator receiver; ATP-binding region, ATPase domain protein; histidine kinase A domain protein; Sigma-70, region 4 type 2; PAS fold-4 domain protein; signal transduction histidine kinase with CheB and CheR activity 75372..79709 Acidiphilium cryptum JF-5 5159088 YP_001219935.1 CDS Acry_3170 NC_009467.1 80154 81200 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 80154..81200 Acidiphilium cryptum JF-5 5159035 YP_001219936.1 CDS Acry_3171 NC_009467.1 81170 82048 R PFAM: regulatory protein GntR, HTH; regulatory protein GntR, HTH complement(81170..82048) Acidiphilium cryptum JF-5 5159036 YP_001219937.1 CDS Acry_3172 NC_009467.1 82617 83825 D PFAM: transposase, mutator type; transposase, mutator type 82617..83825 Acidiphilium cryptum JF-5 5159028 YP_001219938.1 CDS Acry_3173 NC_009467.1 84454 85164 R transposase complement(84454..85164) Acidiphilium cryptum JF-5 5159038 YP_001219939.1 CDS Acry_3174 NC_009467.1 86018 86296 R PFAM: plasmid stabilization system; plasmid stabilization system protein complement(86018..86296) Acidiphilium cryptum JF-5 5159090 YP_001219940.1 CDS Acry_3175 NC_009467.1 86302 86592 D hypothetical protein 86302..86592 Acidiphilium cryptum JF-5 5159091 YP_001219941.1 CDS Acry_3176 NC_009467.1 86592 86864 D hypothetical protein 86592..86864 Acidiphilium cryptum JF-5 5159092 YP_001219942.1 CDS Acry_3177 NC_009467.1 86998 88122 D hypothetical protein 86998..88122 Acidiphilium cryptum JF-5 5159093 YP_001219943.1 CDS Acry_3178 NC_009467.1 88223 88492 D PFAM: WGR domain protein; WGR domain-containing protein 88223..88492 Acidiphilium cryptum JF-5 5159020 YP_001219944.1 CDS Acry_3179 NC_009467.1 88768 91056 D hypothetical protein 88768..91056 Acidiphilium cryptum JF-5 5159089 YP_001219945.1 CDS Acry_3180 NC_009467.1 91393 91818 R PFAM: PilT protein domain protein; PilT domain-containing protein complement(91393..91818) Acidiphilium cryptum JF-5 5159033 YP_001219946.1 CDS Acry_3181 NC_009467.1 91815 92090 R hypothetical protein complement(91815..92090) Acidiphilium cryptum JF-5 5159066 YP_001219947.1 CDS Acry_3183 NC_009467.1 93167 93382 R hypothetical protein complement(93167..93382) Acidiphilium cryptum JF-5 5159024 YP_001219948.1 CDS Acry_3184 NC_009467.1 93525 94280 D hypothetical protein 93525..94280 Acidiphilium cryptum JF-5 5159007 YP_001219949.1 CDS Acry_3185 NC_009467.1 94196 95404 R PFAM: transposase, mutator type; transposase, mutator type complement(94196..95404) Acidiphilium cryptum JF-5 5159021 YP_001219950.1 CDS Acry_3186 NC_009467.1 95519 95839 R hypothetical protein complement(95519..95839) Acidiphilium cryptum JF-5 5158986 YP_001219951.1 CDS Acry_3187 NC_009467.1 96132 96545 R hypothetical protein complement(96132..96545) Acidiphilium cryptum JF-5 5159063 YP_001219952.1 CDS Acry_3188 NC_009467.1 96950 97573 D hypothetical protein 96950..97573 Acidiphilium cryptum JF-5 5159065 YP_001219953.1 CDS Acry_3189 NC_009467.1 97387 98373 R hypothetical protein complement(97387..98373) Acidiphilium cryptum JF-5 5159016 YP_001219954.1 CDS Acry_3190 NC_009467.1 98745 99074 D hypothetical protein 98745..99074 Acidiphilium cryptum JF-5 5159037 YP_001219955.1 CDS Acry_3191 NC_009467.1 99126 99464 D hypothetical protein 99126..99464 Acidiphilium cryptum JF-5 5158937 YP_001219956.1 CDS Acry_3192 NC_009467.1 99418 99723 R hypothetical protein complement(99418..99723) Acidiphilium cryptum JF-5 5158930 YP_001219957.1 CDS Acry_3193 NC_009467.1 99832 100389 D PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 99832..100389 Acidiphilium cryptum JF-5 5158927 YP_001219958.1 CDS Acry_3194 NC_009467.1 100689 100994 D PFAM: CsbD family protein; CsbD family protein 100689..100994 Acidiphilium cryptum JF-5 5158950 YP_001219959.1 CDS Acry_3195 NC_009467.1 101491 102417 D TIGRFAM: esterase, PHB depolymerase family; PHB depolymerase family esterase 101491..102417 Acidiphilium cryptum JF-5 5158947 YP_001219960.1 CDS Acry_3196 NC_009467.1 102462 104444 D PFAM: protein of unknown function UPF0118; hypothetical protein 102462..104444 Acidiphilium cryptum JF-5 5158965 YP_001219961.1 CDS Acry_3197 NC_009467.1 104657 105187 R response regulator receiver protein complement(104657..105187) Acidiphilium cryptum JF-5 5158944 YP_001219962.1 CDS Acry_3198 NC_009467.1 105560 105916 D hypothetical protein 105560..105916 Acidiphilium cryptum JF-5 5158929 YP_001219963.1 CDS Acry_3199 NC_009467.1 105997 106335 R hypothetical protein complement(105997..106335) Acidiphilium cryptum JF-5 5158945 YP_001219964.1 CDS Acry_3200 NC_009467.1 106952 107788 D PFAM: band 7 protein; band 7 protein 106952..107788 Acidiphilium cryptum JF-5 5158946 YP_001219965.1 CDS Acry_3201 NC_009467.1 108038 109294 D FOG: Transposase-like protein; transposase 108038..109294 Acidiphilium cryptum JF-5 5158971 YP_001219966.1 CDS Acry_3202 NC_009467.1 109482 110726 D PFAM: transposase, IS4 family protein; transposase, IS4 family protein 109482..110726 Acidiphilium cryptum JF-5 5158921 YP_001219967.1 CDS Acry_3203 NC_009467.1 111082 111759 D hypothetical protein 111082..111759 Acidiphilium cryptum JF-5 5159051 YP_001219968.1 CDS Acry_3204 NC_009467.1 111777 112193 D hypothetical protein 111777..112193 Acidiphilium cryptum JF-5 5158957 YP_001219969.1 CDS Acry_3205 NC_009467.1 112483 114747 D hypothetical protein 112483..114747 Acidiphilium cryptum JF-5 5158943 YP_001219970.1 CDS Acry_3206 NC_009467.1 114877 117558 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; plasma-membrane proton-efflux P-type ATPase; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; plasma-membrane proton-efflux P-type ATPase 114877..117558 Acidiphilium cryptum JF-5 5158916 YP_001219971.1 CDS Acry_3207 NC_009467.1 117812 118915 R PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein complement(117812..118915) Acidiphilium cryptum JF-5 5158934 YP_001219972.1 CDS Acry_3208 NC_009467.1 118968 119774 R PFAM: transposase, IS4 family protein; transposase, IS4 family protein complement(118968..119774) Acidiphilium cryptum JF-5 5158931 YP_001219973.1 CDS Acry_3209 NC_009467.1 120083 120739 R transposase complement(120083..120739) Acidiphilium cryptum JF-5 5158935 YP_001219974.1 CDS Acry_3211 NC_009467.1 121146 121988 D hypothetical protein 121146..121988 Acidiphilium cryptum JF-5 5158926 YP_001219975.1 CDS Acry_3212 NC_009467.1 121948 123171 R PFAM: transposase, mutator type; transposase, mutator type complement(121948..123171) Acidiphilium cryptum JF-5 5159045 YP_001219976.1 CDS Acry_3213 NC_009467.1 123296 123841 D PFAM: transposase, IS4 family protein; transposase, IS4 family protein 123296..123841 Acidiphilium cryptum JF-5 5158923 YP_001219977.1 CDS Acry_3214 NC_009467.1 123843 124535 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; CRP/FNR family transcriptional regulator complement(123843..124535) Acidiphilium cryptum JF-5 5159041 YP_001219978.1 CDS Acry_3215 NC_009467.1 127229 128599 D PFAM: Na+/H+ antiporter NhaA; Na+/H+ antiporter NhaA 127229..128599 Acidiphilium cryptum JF-5 5158932 YP_001219979.1 CDS Acry_3216 NC_009467.1 129492 130319 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; methyltransferase type 11 129492..130319 Acidiphilium cryptum JF-5 5158955 YP_001219980.1 CDS Acry_3217 NC_009467.1 130377 130631 R hypothetical protein complement(130377..130631) Acidiphilium cryptum JF-5 5158949 YP_001219981.1 CDS Acry_3218 NC_009467.1 131326 131589 R hypothetical protein complement(131326..131589) Acidiphilium cryptum JF-5 5158959 YP_001219982.1 CDS Acry_3219 NC_009467.1 131729 132937 D PFAM: transposase, mutator type; transposase, mutator type 131729..132937 Acidiphilium cryptum JF-5 5158938 YP_001219983.1 CDS Acry_3221 NC_009467.1 133465 134994 D PFAM: Integrase, catalytic region; integrase catalytic subunit 133465..134994 Acidiphilium cryptum JF-5 5158918 YP_001219984.1 CDS Acry_3222 NC_009467.1 134991 135866 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 134991..135866 Acidiphilium cryptum JF-5 5158962 YP_001219985.1 CDS Acry_3223 NC_009467.1 135929 137575 R PFAM: transposase, IS4 family protein; transposase, IS4 family protein complement(135929..137575) Acidiphilium cryptum JF-5 5158968 YP_001219986.1 CDS Acry_3224 NC_009467.1 137757 138104 D hypothetical protein 137757..138104 Acidiphilium cryptum JF-5 5158940 YP_001219987.1 CDS Acry_3225 NC_009467.1 138372 139010 R hypothetical protein complement(138372..139010) Acidiphilium cryptum JF-5 5158987 YP_001219988.1 CDS Acry_3226 NC_009467.1 139096 144141 R PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase complement(139096..144141) Acidiphilium cryptum JF-5 5159059 YP_001219989.1 CDS Acry_3227 NC_009467.1 144189 144527 R hypothetical protein complement(144189..144527) Acidiphilium cryptum JF-5 5158924 YP_001219990.1 CDS Acry_3228 NC_009467.1 144665 145345 D hypothetical protein 144665..145345 Acidiphilium cryptum JF-5 5158978 YP_001219991.1 CDS Acry_3229 NC_009467.1 145355 146245 D hypothetical protein 145355..146245 Acidiphilium cryptum JF-5 5158920 YP_001219992.1 CDS Acry_3230 NC_009467.1 146461 146946 D hypothetical protein 146461..146946 Acidiphilium cryptum JF-5 5159039 YP_001219993.1 CDS Acry_3231 NC_009467.1 146951 147355 D hypothetical protein 146951..147355 Acidiphilium cryptum JF-5 5158969 YP_001219994.1 CDS Acry_3232 NC_009467.1 147377 147694 R hypothetical protein complement(147377..147694) Acidiphilium cryptum JF-5 5159042 YP_001219995.1 CDS Acry_3233 NC_009467.1 147823 148968 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: Haloacid dehalogenase domain protein hydrolase; ATPase, P-type (transporting), HAD superfamily, subfamily IC complement(147823..148968) Acidiphilium cryptum JF-5 5158915 YP_001219996.1 CDS Acry_3234 NC_009467.1 149080 149886 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein complement(149080..149886) Acidiphilium cryptum JF-5 5158964 YP_001219997.1 CDS Acry_3235 NC_009467.1 149876 151402 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(149876..151402) Acidiphilium cryptum JF-5 5158951 YP_001219998.1 CDS Acry_3236 NC_009467.1 151500 152534 R PFAM: Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; E1-E2 ATPase-associated domain-containing protein complement(151500..152534) Acidiphilium cryptum JF-5 5158989 YP_001219999.1 CDS Acry_3237 NC_009467.1 152615 153028 D PFAM: regulatory protein, MerR; MerR family transcriptional regulator 152615..153028 Acidiphilium cryptum JF-5 5159054 YP_001220000.1 CDS Acry_3238 NC_009467.1 153038 154276 R PFAM: major facilitator superfamily MFS_1; major facilitator transporter complement(153038..154276) Acidiphilium cryptum JF-5 5158973 YP_001220001.1 CDS Acry_3239 NC_009467.1 154282 155013 R PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein complement(154282..155013) Acidiphilium cryptum JF-5 5158941 YP_001220002.1 CDS Acry_3240 NC_009467.1 155099 155764 D PFAM: Rhodanese domain protein; regulatory protein, ArsR; regulatory protein, ArsR 155099..155764 Acidiphilium cryptum JF-5 5158948 YP_001220003.1 CDS Acry_3241 NC_009467.1 155937 156224 R TIGRFAM: addiction module antidote protein, HigA family; XRE family plasmid maintenance system antidote protein complement(155937..156224) Acidiphilium cryptum JF-5 5159044 YP_001220004.1 CDS Acry_3242 NC_009467.1 156236 156514 R PFAM: plasmid maintenance system killer; plasmid maintenance system killer complement(156236..156514) Acidiphilium cryptum JF-5 5158988 YP_001220005.1 CDS Acry_3244 NC_009467.1 156837 157073 R PFAM: phage integrase domain protein SAM domain protein; phage integrase domain/SAM domain-containing protein complement(156837..157073) Acidiphilium cryptum JF-5 5158961 YP_001220006.1 CDS Acry_3247 NC_009467.1 159794 161017 D PFAM: transposase, mutator type; transposase, mutator type 159794..161017 Acidiphilium cryptum JF-5 5158970 YP_001220007.1 CDS Acry_3248 NC_009467.1 161021 161698 R transposase complement(161021..161698) Acidiphilium cryptum JF-5 5158953 YP_001220008.1 CDS Acry_3249 NC_009467.1 161920 162135 D hypothetical protein 161920..162135 Acidiphilium cryptum JF-5 5159057 YP_001220009.1 CDS Acry_3250 NC_009467.1 162308 162586 D PFAM: plasmid stabilization system; plasmid stabilization system protein 162308..162586 Acidiphilium cryptum JF-5 5158936 YP_001220010.1 CDS Acry_3251 NC_009467.1 162993 163553 D PFAM: Heme NO binding domain protein; heme NO binding domain-containing protein 162993..163553 Acidiphilium cryptum JF-5 5159058 YP_001220011.1 CDS Acry_3252 NC_009467.1 163559 165421 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 163559..165421 Acidiphilium cryptum JF-5 5159060 YP_001220012.1 CDS Acry_3253 NC_009467.1 165732 166985 R PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(165732..166985) Acidiphilium cryptum JF-5 5159002 YP_001220013.1 CDS Acry_3256 NC_009467.1 169564 169914 R PFAM: helix-turn-helix, Fis-type; Resolvase helix-turn-helix domain protein; Fis family transcriptional regulator complement(169564..169914) Acidiphilium cryptum JF-5 5159003 YP_001220014.1 CDS Acry_3257 NC_009467.1 169881 170546 R PFAM: Rhodanese domain protein; regulatory protein, ArsR; rhodanese domain-containing protein complement(169881..170546) Acidiphilium cryptum JF-5 5158914 YP_001220015.1 CDS Acry_3258 NC_009467.1 170632 171363 D PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 170632..171363 Acidiphilium cryptum JF-5 5158913 YP_001220016.1 CDS Acry_3259 NC_009467.1 171369 172604 D PFAM: major facilitator superfamily MFS_1; major facilitator transporter 171369..172604 Acidiphilium cryptum JF-5 5159053 YP_001220017.1 CDS Acry_3260 NC_009467.1 173493 173891 D hypothetical protein 173493..173891 Acidiphilium cryptum JF-5 5158979 YP_001220018.1 CDS Acry_3261 NC_009467.1 174594 174902 R hypothetical protein complement(174594..174902) Acidiphilium cryptum JF-5 5158994 YP_001220019.1 CDS Acry_3262 NC_009467.1 174947 175102 R hypothetical protein complement(174947..175102) Acidiphilium cryptum JF-5 5158963 YP_001220020.1 CDS Acry_3263 NC_009467.1 175195 175518 R antirestriction protein-like protein complement(175195..175518) Acidiphilium cryptum JF-5 5158933 YP_001220021.1 CDS Acry_3264 NC_009467.1 175771 176982 D PFAM: phage integrase family protein; phage integrase family protein 175771..176982 Acidiphilium cryptum JF-5 5158958 YP_001220022.1 CDS Acry_3265 NC_009467.1 176979 177920 D PFAM: phage integrase family protein; phage integrase family protein 176979..177920 Acidiphilium cryptum JF-5 5158985 YP_001220023.1 CDS Acry_3266 NC_009467.1 177917 178909 D PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; phage integrase family protein 177917..178909 Acidiphilium cryptum JF-5 5158995 YP_001220024.1 CDS Acry_3267 NC_009467.1 178677 179702 R PFAM: domain of unknown function DUF1738; hypothetical protein complement(178677..179702) Acidiphilium cryptum JF-5 5159049 YP_001220025.1 CDS Acry_3268 NC_009467.1 180289 180699 R PFAM: PilT protein domain protein; PilT domain-containing protein complement(180289..180699) Acidiphilium cryptum JF-5 5159055 YP_001220026.1 CDS Acry_3269 NC_009467.1 180696 181016 R PFAM: Rv0623 family protein transcription factor; transcription factor complement(180696..181016) Acidiphilium cryptum JF-5 5158982 YP_001220027.1 CDS Acry_3270 NC_009467.1 181131 181652 R PFAM: GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase complement(181131..181652) Acidiphilium cryptum JF-5 5158928 YP_001220028.1 CDS Acry_3271 NC_009467.1 181649 181948 R hypothetical protein complement(181649..181948) Acidiphilium cryptum JF-5 5158996 YP_001220029.1 CDS Acry_3272 NC_009467.1 182342 182608 D PFAM: WGR domain protein; WGR domain-containing protein 182342..182608 Acidiphilium cryptum JF-5 5158956 YP_001220030.1 CDS Acry_3273 NC_009467.1 182886 185081 D TIGRFAM: helicase, RecD/TraA family; SMART: Helix-hairpin-helix DNA-binding, class 1; AAA ATPase; RecD/TraA family helicase 182886..185081 Acidiphilium cryptum JF-5 5158939 YP_001220031.1 CDS Acry_3274 NC_009467.1 185171 186562 R PFAM: replication protein C; replication protein C complement(185171..186562) Acidiphilium cryptum JF-5 5158925 YP_001220032.1 CDS Acry_3275 NC_009467.1 186750 187718 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; RepB plasmid partition; parB-like partition protein complement(186750..187718) Acidiphilium cryptum JF-5 5159043 YP_001220033.1 CDS Acry_3276 NC_009467.1 187721 188953 R PFAM: regulatory protein, MerR; Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(187721..188953) Acidiphilium cryptum JF-5 5158942 YP_001220034.1 CDS Acry_3277 NC_009467.1 190843 191970 R PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; phage integrase domain/SAM domain-containing protein complement(190843..191970) Acidiphilium cryptum JF-5 5159040 YP_001220035.1 CDS Acry_3278 NC_009467.1 192085 192663 R hypothetical protein complement(192085..192663) Acidiphilium cryptum JF-5 5159047 YP_001220036.1 CDS Acry_3279 NC_009467.1 192660 193109 R TIGRFAM: DNA binding domain, excisionase family; DNA binding domain-containing protein complement(192660..193109) Acidiphilium cryptum JF-5 5158972 YP_001220037.1 CDS Acry_3280 NC_009467.1 193143 193394 R hypothetical protein complement(193143..193394) Acidiphilium cryptum JF-5 5158912 YP_001220038.1 CDS Acry_3281 NC_009467.1 193781 194983 D hypothetical protein 193781..194983 Acidiphilium cryptum JF-5 5158960 YP_001220039.1 CDS Acry_3282 NC_009467.1 195252 195728 D Beta-lactamase class C and other penicillin binding protein-like protein 195252..195728 Acidiphilium cryptum JF-5 5158997 YP_001220040.1 CDS Acry_3283 NC_009467.1 195752 196462 D transposase 195752..196462 Acidiphilium cryptum JF-5 5158999 YP_001220041.1 CDS Acry_3284 NC_009467.1 196416 198830 D PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; BFD domain protein [2Fe-2S]-binding domain protein; molybdopterin oxidoreductase 196416..198830 Acidiphilium cryptum JF-5 5158967 YP_001220042.1 CDS Acry_3285 NC_009467.1 198808 199593 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrin-III C-methyltransferase 198808..199593 Acidiphilium cryptum JF-5 5158966 YP_001220043.1 CDS Acry_3286 NC_009467.1 199562 200146 R siroheme synthase complement(199562..200146) Acidiphilium cryptum JF-5 5158998 YP_001220044.1 CDS Acry_3287 NC_009467.1 200332 200640 D hypothetical protein 200332..200640 Acidiphilium cryptum JF-5 5159001 YP_001220045.1 CDS Acry_3290 NC_009467.1 202493 202732 D hypothetical protein 202493..202732 Acidiphilium cryptum JF-5 5159000 YP_001220046.1 CDS Acry_3291 NC_009467.1 202859 203581 D hypothetical protein 202859..203581 Acidiphilium cryptum JF-5 5158991 YP_001220047.1 CDS Acry_3292 NC_009468.1 42 3290 R TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP C-terminal domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III, alpha subunit complement(42..3290) Acidiphilium cryptum JF-5 5159250 YP_001220048.1 CDS Acry_3293 NC_009468.1 3287 4855 R nucleotidyltransferase/DNA polymerase involved in DNA repair-like protein complement(3287..4855) Acidiphilium cryptum JF-5 5159261 YP_001220049.1 CDS Acry_3295 NC_009468.1 5797 7950 D PFAM: UvrD/REP helicase; UvrD/REP helicase 5797..7950 Acidiphilium cryptum JF-5 5159266 YP_001220050.1 CDS Acry_3296 NC_009468.1 7943 8677 D PFAM: protein of unknown function DUF159; hypothetical protein 7943..8677 Acidiphilium cryptum JF-5 5159264 YP_001220051.1 CDS Acry_3297 NC_009468.1 8578 9501 R PFAM: putative transposase, IS891/IS1136/IS1341 family; IS891/IS1136/IS1341 family transposase complement(8578..9501) Acidiphilium cryptum JF-5 5159256 YP_001220052.1 CDS Acry_3298 NC_009468.1 9556 11154 D PFAM: Integrase, catalytic region; integrase catalytic subunit 9556..11154 Acidiphilium cryptum JF-5 5159260 YP_001220053.1 CDS Acry_3299 NC_009468.1 11151 12026 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 11151..12026 Acidiphilium cryptum JF-5 5159241 YP_001220054.1 CDS Acry_3300 NC_009468.1 12089 12448 R hypothetical protein complement(12089..12448) Acidiphilium cryptum JF-5 5159255 YP_001220055.1 CDS Acry_3301 NC_009468.1 12472 12888 D PFAM: transposase IS200-family protein; transposase IS200-family protein 12472..12888 Acidiphilium cryptum JF-5 5159262 YP_001220056.1 CDS Acry_3302 NC_009468.1 13271 14263 D hypothetical protein 13271..14263 Acidiphilium cryptum JF-5 5159253 YP_001220057.1 CDS Acry_3303 NC_009468.1 14557 15813 D TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit 14557..15813 Acidiphilium cryptum JF-5 5159186 YP_001220058.1 CDS Acry_3304 NC_009468.1 15810 16952 D PFAM: protein of unknown function DUF214; hypothetical protein 15810..16952 Acidiphilium cryptum JF-5 5159242 YP_001220059.1 CDS Acry_3305 NC_009468.1 16945 17709 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter related 16945..17709 Acidiphilium cryptum JF-5 5159100 YP_001220060.1 CDS Acry_3306 NC_009468.1 18027 18344 R hypothetical protein complement(18027..18344) Acidiphilium cryptum JF-5 5159099 YP_001220061.1 CDS Acry_3307 NC_009468.1 19016 20407 R PFAM: replication protein C; replication protein C complement(19016..20407) Acidiphilium cryptum JF-5 5159234 YP_001220062.1 CDS Acry_3308 NC_009468.1 21035 21919 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(21035..21919) Acidiphilium cryptum JF-5 5159156 YP_001220063.1 CDS Acry_3309 NC_009468.1 22010 23197 D PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; major facilitator transporter 22010..23197 Acidiphilium cryptum JF-5 5159245 YP_001220064.1 CDS Acry_3310 NC_009468.1 23194 24246 D PFAM: 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase, NPD 23194..24246 Acidiphilium cryptum JF-5 5159239 YP_001220065.1 CDS Acry_3311 NC_009468.1 24631 25020 R hypothetical protein complement(24631..25020) Acidiphilium cryptum JF-5 5159232 YP_001220066.1 CDS Acry_3312 NC_009468.1 25326 25595 R hypothetical protein complement(25326..25595) Acidiphilium cryptum JF-5 5159200 YP_001220067.1 CDS Acry_3313 NC_009468.1 25710 26090 D hypothetical protein 25710..26090 Acidiphilium cryptum JF-5 5159240 YP_001220068.1 CDS Acry_3314 NC_009468.1 26164 28842 D TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; CRISPR-associated helicase Cas3 26164..28842 Acidiphilium cryptum JF-5 5159185 YP_001220069.1 CDS Acry_3315 NC_009468.1 29133 30722 D TIGRFAM: CRISPR-associated protein, Cse1 family; CRISPR-associated Cse1 family protein 29133..30722 Acidiphilium cryptum JF-5 5159244 YP_001220070.1 CDS Acry_3316 NC_009468.1 30719 31258 D hypothetical protein 30719..31258 Acidiphilium cryptum JF-5 5159221 YP_001220071.1 CDS Acry_3317 NC_009468.1 31258 32370 D TIGRFAM: CRISPR-associated protein, Cse4 family; CRISPR-associated Cse4 family protein 31258..32370 Acidiphilium cryptum JF-5 5159121 YP_001220072.1 CDS Acry_3318 NC_009468.1 32372 33121 D TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; CRISPR-associated Cas5 family protein 32372..33121 Acidiphilium cryptum JF-5 5159222 YP_001220073.1 CDS Acry_3319 NC_009468.1 33127 33804 D TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein, CT1974; CRISPR-associated Cse3 family protein 33127..33804 Acidiphilium cryptum JF-5 5159236 YP_001220074.1 CDS Acry_3320 NC_009468.1 33797 34759 D TIGRFAM: CRISPR-associated protein Cas1; CRISPR-associated Cas1 family protein 33797..34759 Acidiphilium cryptum JF-5 5159150 YP_001220075.1 CDS Acry_3321 NC_009468.1 38112 40184 R hypothetical protein complement(38112..40184) Acidiphilium cryptum JF-5 5159267 YP_001220076.1 CDS Acry_3322 NC_009468.1 40187 41011 R hypothetical protein complement(40187..41011) Acidiphilium cryptum JF-5 5159233 YP_001220077.1 CDS Acry_3323 NC_009468.1 41008 41421 R hypothetical protein complement(41008..41421) Acidiphilium cryptum JF-5 5159229 YP_001220078.1 CDS Acry_3324 NC_009468.1 41657 42250 D PFAM: regulatory protein, MerR; Resolvase, N-terminal domain; resolvase domain-containing protein 41657..42250 Acidiphilium cryptum JF-5 5159149 YP_001220079.1 CDS Acry_3325 NC_009468.1 42244 43443 D TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; IS605 family transposase OrfB 42244..43443 Acidiphilium cryptum JF-5 5159145 YP_001220080.1 CDS Acry_3326 NC_009468.1 43830 44450 D PFAM: DNA recombination protein RuvA, domain I; SMART: Helix-hairpin-helix DNA-binding, class 1; DNA recombination protein RuvA 43830..44450 Acidiphilium cryptum JF-5 5159141 YP_001220081.1 CDS ruvB NC_009468.1 44507 45445 D promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB 44507..45445 Acidiphilium cryptum JF-5 5159146 YP_001220082.1 CDS Acry_3328 NC_009468.1 45445 45996 D hypothetical protein 45445..45996 Acidiphilium cryptum JF-5 5159147 YP_001220083.1 CDS Acry_3329 NC_009468.1 46324 46656 R hypothetical protein complement(46324..46656) Acidiphilium cryptum JF-5 5159230 YP_001220084.1 CDS Acry_3330 NC_009468.1 46722 46973 D hypothetical protein 46722..46973 Acidiphilium cryptum JF-5 5159143 YP_001220085.1 CDS Acry_3331 NC_009468.1 47613 48353 D PFAM: YceI family protein; YceI family protein 47613..48353 Acidiphilium cryptum JF-5 5159137 YP_001220086.1 CDS Acry_3332 NC_009468.1 48346 48891 D PFAM: cytochrome B561; cytochrome B561 48346..48891 Acidiphilium cryptum JF-5 5159136 YP_001220087.1 CDS Acry_3333 NC_009468.1 49942 50958 D hypothetical protein 49942..50958 Acidiphilium cryptum JF-5 5159135 YP_001220088.1 CDS Acry_3334 NC_009468.1 51404 52369 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase complement(51404..52369) Acidiphilium cryptum JF-5 5159134 YP_001220089.1 CDS Acry_3335 NC_009468.1 53072 53572 D hypothetical protein 53072..53572 Acidiphilium cryptum JF-5 5159133 YP_001220090.1 CDS Acry_3336 NC_009468.1 53885 54379 D hypothetical protein 53885..54379 Acidiphilium cryptum JF-5 5159132 YP_001220091.1 CDS Acry_3337 NC_009468.1 54386 55231 R PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein complement(54386..55231) Acidiphilium cryptum JF-5 5159131 YP_001220092.1 CDS Acry_3338 NC_009468.1 55335 55895 R PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; resolvase domain-containing protein complement(55335..55895) Acidiphilium cryptum JF-5 5159128 YP_001220093.1 CDS Acry_3339 NC_009468.1 55948 56460 D PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 55948..56460 Acidiphilium cryptum JF-5 5159127 YP_001220094.1 CDS Acry_3340 NC_009468.1 56496 56885 D hypothetical protein 56496..56885 Acidiphilium cryptum JF-5 5159125 YP_001220095.1 CDS Acry_3341 NC_009468.1 57023 57577 D hypothetical protein 57023..57577 Acidiphilium cryptum JF-5 5159124 YP_001220096.1 CDS Acry_3342 NC_009468.1 57759 58571 D PFAM: metallophosphoesterase; metallophosphoesterase 57759..58571 Acidiphilium cryptum JF-5 5159123 YP_001220097.1 CDS Acry_3343 NC_009468.1 58568 59284 D PFAM: metallophosphoesterase; metallophosphoesterase 58568..59284 Acidiphilium cryptum JF-5 5159122 YP_001220098.1 CDS Acry_3344 NC_009468.1 59338 59736 R hypothetical protein complement(59338..59736) Acidiphilium cryptum JF-5 5159120 YP_001220099.1 CDS Acry_3345 NC_009468.1 59936 60745 R PFAM: regulatory protein, IclR; regulatory protein, IclR complement(59936..60745) Acidiphilium cryptum JF-5 5159119 YP_001220100.1 CDS Acry_3346 NC_009468.1 60944 61801 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter related 60944..61801 Acidiphilium cryptum JF-5 5159118 YP_001220101.1 CDS Acry_3347 NC_009468.1 61818 63128 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 61818..63128 Acidiphilium cryptum JF-5 5159116 YP_001220102.1 CDS Acry_3348 NC_009468.1 63145 63894 D PFAM: NUDIX hydrolase; NUDIX hydrolase 63145..63894 Acidiphilium cryptum JF-5 5159115 YP_001220103.1 CDS Acry_3350 NC_009468.1 65524 67017 D PFAM: Na+/solute symporter; Na+/solute symporter 65524..67017 Acidiphilium cryptum JF-5 5159113 YP_001220104.1 CDS Acry_3351 NC_009468.1 67234 67698 D hypothetical protein 67234..67698 Acidiphilium cryptum JF-5 5159111 YP_001220105.1 CDS Acry_3352 NC_009468.1 67707 68312 D PFAM: restriction endonuclease; restriction endonuclease 67707..68312 Acidiphilium cryptum JF-5 5159110 YP_001220106.1 CDS Acry_3353 NC_009468.1 68322 68723 R PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator complement(68322..68723) Acidiphilium cryptum JF-5 5159109 YP_001220107.1 CDS Acry_3354 NC_009468.1 68839 69462 R hypothetical protein complement(68839..69462) Acidiphilium cryptum JF-5 5159112 YP_001220108.1 CDS Acry_3355 NC_009468.1 69561 70400 R hypothetical protein complement(69561..70400) Acidiphilium cryptum JF-5 5159148 YP_001220109.1 CDS Acry_3356 NC_009468.1 70677 70916 R hypothetical protein complement(70677..70916) Acidiphilium cryptum JF-5 5159223 YP_001220110.1 CDS Acry_3357 NC_009468.1 71007 71858 D hypothetical protein 71007..71858 Acidiphilium cryptum JF-5 5159214 YP_001220111.1 CDS Acry_3358 NC_009468.1 71903 73144 R PFAM: filamentation induced by cAMP protein Fic; filamentation induced by cAMP protein Fic complement(71903..73144) Acidiphilium cryptum JF-5 5159216 YP_001220112.1 CDS Acry_3359 NC_009468.1 73293 74399 R hypothetical protein complement(73293..74399) Acidiphilium cryptum JF-5 5159212 YP_001220113.1 CDS Acry_3360 NC_009468.1 74540 75703 D hypothetical protein 74540..75703 Acidiphilium cryptum JF-5 5159191 YP_001220114.1 CDS Acry_3361 NC_009468.1 75757 76203 R hypothetical protein complement(75757..76203) Acidiphilium cryptum JF-5 5159248 YP_001220115.1 CDS Acry_3362 NC_009468.1 76365 76922 R hypothetical protein complement(76365..76922) Acidiphilium cryptum JF-5 5159208 YP_001220116.1 CDS Acry_3363 NC_009468.1 77163 77720 D PFAM: nucleoside 2-deoxyribosyltransferase; nucleoside 2-deoxyribosyltransferase 77163..77720 Acidiphilium cryptum JF-5 5159209 YP_001220117.1 CDS Acry_3364 NC_009468.1 78680 80134 D PFAM: Radical SAM domain protein; radical SAM domain-containing protein 78680..80134 Acidiphilium cryptum JF-5 5159207 YP_001220118.1 CDS Acry_3365 NC_009468.1 80122 81303 D PFAM: Radical SAM domain protein; radical SAM domain-containing protein 80122..81303 Acidiphilium cryptum JF-5 5159205 YP_001220119.1 CDS Acry_3366 NC_009468.1 81684 83159 D PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; ATPase central domain-containing protein 81684..83159 Acidiphilium cryptum JF-5 5159252 YP_001220120.1 CDS Acry_3367 NC_009468.1 83313 83666 D hypothetical protein 83313..83666 Acidiphilium cryptum JF-5 5159203 YP_001220121.1 CDS Acry_3368 NC_009468.1 83663 84184 D hypothetical protein 83663..84184 Acidiphilium cryptum JF-5 5159129 YP_001220122.1 CDS Acry_3369 NC_009468.1 84188 86872 R PFAM: sigma-70 region 4 domain protein; sigma-70 region 4 domain-containing protein complement(84188..86872) Acidiphilium cryptum JF-5 5159126 YP_001220123.1 CDS Acry_3370 NC_009468.1 87261 87539 R hypothetical protein complement(87261..87539) Acidiphilium cryptum JF-5 5159117 YP_001220124.1 CDS Acry_3371 NC_009468.1 87871 88137 D PFAM: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 87871..88137 Acidiphilium cryptum JF-5 5159201 YP_001220125.1 CDS Acry_3372 NC_009468.1 88134 89282 D PFAM: HipA domain protein; HipA domain-containing protein 88134..89282 Acidiphilium cryptum JF-5 5159198 YP_001220126.1 CDS Acry_3373 NC_009468.1 89444 89701 D PFAM: IstB domain protein ATP-binding protein; IstB ATP binding domain-containing protein 89444..89701 Acidiphilium cryptum JF-5 5159196 YP_001220127.1 CDS Acry_3375 NC_009468.1 90016 90147 D hypothetical protein 90016..90147 Acidiphilium cryptum JF-5 5159195 YP_001220128.1 CDS Acry_3376 NC_009468.1 90683 93145 D PFAM: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; putative phosphoketolase 90683..93145 Acidiphilium cryptum JF-5 5159199 YP_001220129.1 CDS Acry_3377 NC_009468.1 93356 93748 D hypothetical protein 93356..93748 Acidiphilium cryptum JF-5 5159265 YP_001220130.1 CDS Acry_3378 NC_009468.1 94167 94619 R hypothetical protein complement(94167..94619) Acidiphilium cryptum JF-5 5159194 YP_001220131.1 CDS Acry_3379 NC_009468.1 94823 96502 D PFAM: transposase, IS4 family protein; transposase, IS4 family protein 94823..96502 Acidiphilium cryptum JF-5 5159263 YP_001220132.1 CDS Acry_3380 NC_009468.1 97123 97491 D hypothetical protein 97123..97491 Acidiphilium cryptum JF-5 5159193 YP_001220133.1 CDS Acry_3381 NC_009468.1 97955 98353 D hypothetical protein 97955..98353 Acidiphilium cryptum JF-5 5159102 YP_001220134.1 CDS Acry_3383 NC_009468.1 99228 100943 R PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; thiamine pyrophosphate binding domain-containing protein complement(99228..100943) Acidiphilium cryptum JF-5 5159249 YP_001220135.1 CDS Acry_3384 NC_009468.1 100957 102585 R PFAM: ferredoxin-dependent glutamate synthase; ferredoxin-dependent glutamate synthase complement(100957..102585) Acidiphilium cryptum JF-5 5159251 YP_001220136.1 CDS Acry_3385 NC_009468.1 103176 104042 D PFAM: MltA-interacting MipA family protein; MltA-interacting MipA family protein 103176..104042 Acidiphilium cryptum JF-5 5159258 YP_001220137.1 CDS Acry_3386 NC_009468.1 104254 104646 R hypothetical protein complement(104254..104646) Acidiphilium cryptum JF-5 5159257 YP_001220138.1 CDS Acry_3387 NC_009468.1 104711 105934 R PFAM: transposase, mutator type; transposase, mutator type complement(104711..105934) Acidiphilium cryptum JF-5 5159182 YP_001220139.1 CDS Acry_3388 NC_009468.1 106073 106405 D hypothetical protein 106073..106405 Acidiphilium cryptum JF-5 5159188 YP_001220140.1 CDS Acry_3389 NC_009468.1 106903 107499 R hypothetical protein complement(106903..107499) Acidiphilium cryptum JF-5 5159178 YP_001220141.1 CDS Acry_3392 NC_009468.1 109594 111663 D PFAM: Resolvase, N-terminal domain; Recombinase; resolvase domain-containing protein 109594..111663 Acidiphilium cryptum JF-5 5159183 YP_001220142.1 CDS Acry_3393 NC_009468.1 111675 112499 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(111675..112499) Acidiphilium cryptum JF-5 5159187 YP_001220143.1 CDS Acry_3394 NC_009468.1 112521 113435 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 112521..113435 Acidiphilium cryptum JF-5 5159176 YP_001220144.1 CDS Acry_3395 NC_009468.1 113781 114083 R PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(113781..114083) Acidiphilium cryptum JF-5 5159190 YP_001220145.1 CDS Acry_3396 NC_009468.1 114946 115974 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase complement(114946..115974) Acidiphilium cryptum JF-5 5159177 YP_001220146.1 CDS Acry_3397 NC_009468.1 116044 116397 D PFAM: regulatory protein, MerR; MerR family transcriptional regulator 116044..116397 Acidiphilium cryptum JF-5 5159179 YP_001220147.1 CDS Acry_3398 NC_009468.1 116499 116723 R hypothetical protein complement(116499..116723) Acidiphilium cryptum JF-5 5159180 YP_001220148.1 CDS Acry_3399 NC_009468.1 116928 118475 D PFAM: Integrase, catalytic region; integrase catalytic subunit 116928..118475 Acidiphilium cryptum JF-5 5159184 YP_001220149.1 CDS Acry_3400 NC_009468.1 118493 119239 D PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 118493..119239 Acidiphilium cryptum JF-5 5159181 YP_001220150.1 CDS Acry_3401 NC_009468.1 120006 120416 R hypothetical protein complement(120006..120416) Acidiphilium cryptum JF-5 5159215 YP_001220151.1 CDS Acry_3402 NC_009468.1 120451 121296 R PFAM: helix-turn-helix- domain containing protein, AraC type; AraC protein, arabinose-binding/dimerisation; AraC protein, arabinose-binding/dimerisation complement(120451..121296) Acidiphilium cryptum JF-5 5159174 YP_001220152.1 CDS Acry_3403 NC_009468.1 121975 122688 R PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator complement(121975..122688) Acidiphilium cryptum JF-5 5159210 YP_001220153.1 CDS Acry_3404 NC_009468.1 122849 123253 D PFAM: Carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 122849..123253 Acidiphilium cryptum JF-5 5159228 YP_001220154.1 CDS Acry_3405 NC_009468.1 123256 124173 D PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, NAD-binding 123256..124173 Acidiphilium cryptum JF-5 5159274 YP_001220155.1 CDS Acry_3406 NC_009468.1 124229 125566 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 124229..125566 Acidiphilium cryptum JF-5 5159276 YP_001220156.1 CDS Acry_3407 NC_009468.1 125577 126365 D PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 125577..126365 Acidiphilium cryptum JF-5 5159246 YP_001220157.1 CDS Acry_3408 NC_009468.1 126362 127243 D PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 126362..127243 Acidiphilium cryptum JF-5 5159247 YP_001220158.1 CDS Acry_3409 NC_009468.1 127236 128147 D PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 6-phosphogluconate dehydrogenase, NAD-binding 127236..128147 Acidiphilium cryptum JF-5 5159169 YP_001220159.1 CDS Acry_3410 NC_009468.1 128144 128524 D PFAM: Cupin 2, conserved barrel domain protein; cupin 2 domain-containing protein 128144..128524 Acidiphilium cryptum JF-5 5159218 YP_001220160.1 CDS Acry_3411 NC_009468.1 128521 129273 D PFAM: Carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 128521..129273 Acidiphilium cryptum JF-5 5159219 YP_001220161.1 CDS Acry_3412 NC_009468.1 129513 129839 D PFAM: NIPSNAP family containing protein; NIPSNAP family protein 129513..129839 Acidiphilium cryptum JF-5 5159204 YP_001220162.1 CDS Acry_3413 NC_009468.1 130005 130247 R hypothetical protein complement(130005..130247) Acidiphilium cryptum JF-5 5159271 YP_001220163.1 CDS Acry_3414 NC_009468.1 130412 130687 D PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 130412..130687 Acidiphilium cryptum JF-5 5159275 YP_001220164.1 CDS Acry_3415 NC_009468.1 130732 131580 D PFAM: Integrase, catalytic region; integrase catalytic subunit 130732..131580 Acidiphilium cryptum JF-5 5159220 YP_001220165.1 CDS Acry_3416 NC_009468.1 131823 132533 R PFAM: transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein complement(131823..132533) Acidiphilium cryptum JF-5 5159272 YP_001220166.1 CDS Acry_3417 NC_009468.1 132767 133174 R hypothetical protein complement(132767..133174) Acidiphilium cryptum JF-5 5159213 YP_001220167.1 CDS Acry_3418 NC_009468.1 133352 134554 R PFAM: aminotransferase, class V; Serine--glyoxylate transaminase complement(133352..134554) Acidiphilium cryptum JF-5 5159192 YP_001220168.1 CDS Acry_3419 NC_009468.1 134578 135570 R PFAM: Bile acid:sodium symporter; bile acid:sodium symporter complement(134578..135570) Acidiphilium cryptum JF-5 5159171 YP_001220169.1 CDS Acry_3420 NC_009468.1 135694 136479 R Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase complement(135694..136479) Acidiphilium cryptum JF-5 5159142 YP_001220170.1 CDS Acry_3421 NC_009468.1 136476 137726 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F complement(136476..137726) Acidiphilium cryptum JF-5 5159217 YP_001220171.1 CDS Acry_3422 NC_009468.1 137854 138498 D PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 137854..138498 Acidiphilium cryptum JF-5 5159202 YP_001220172.1 CDS Acry_3424 NC_009468.1 138980 139636 R PFAM: cytochrome B561; cytochrome B561 complement(138980..139636) Acidiphilium cryptum JF-5 5159153 YP_001220173.1 CDS Acry_3425 NC_009468.1 139958 140659 R PFAM: transposase, IS4 family protein; transposase, IS4 family protein complement(139958..140659) Acidiphilium cryptum JF-5 5159273 YP_001220174.1 CDS Acry_3426 NC_009468.1 140686 141402 R arabinose efflux permease-like protein complement(140686..141402) Acidiphilium cryptum JF-5 5159270 YP_001220175.1 CDS Acry_3427 NC_009468.1 141399 141842 R hypothetical protein complement(141399..141842) Acidiphilium cryptum JF-5 5159254 YP_001220176.1 CDS Acry_3428 NC_009468.1 141934 142869 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 141934..142869 Acidiphilium cryptum JF-5 5159172 YP_001220177.1 CDS Acry_3430 NC_009468.1 143385 144269 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; NmrA family protein; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 143385..144269 Acidiphilium cryptum JF-5 5159139 YP_001220178.1 CDS Acry_3431 NC_009468.1 144451 144894 R hypothetical protein complement(144451..144894) Acidiphilium cryptum JF-5 5159268 YP_001220179.1 CDS Acry_3432 NC_009468.1 145475 146626 R hypothetical protein complement(145475..146626) Acidiphilium cryptum JF-5 5159106 YP_001220180.1 CDS Acry_3433 NC_009468.1 146712 147503 D hypothetical protein 146712..147503 Acidiphilium cryptum JF-5 5159105 YP_001220181.1 CDS Acry_3434 NC_009468.1 147715 148842 D PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; phage integrase domain/SAM domain-containing protein 147715..148842 Acidiphilium cryptum JF-5 5159144 YP_001220182.1 CDS Acry_3436 NC_009468.1 149342 149917 R hypothetical protein complement(149342..149917) Acidiphilium cryptum JF-5 5159107 YP_001220183.1 CDS Acry_3437 NC_009468.1 150068 150529 D hypothetical protein 150068..150529 Acidiphilium cryptum JF-5 5159104 YP_001220184.1 CDS Acry_3438 NC_009468.1 150680 151297 D hypothetical protein 150680..151297 Acidiphilium cryptum JF-5 5159189 YP_001220185.1 CDS Acry_3439 NC_009468.1 151956 152618 D PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase 151956..152618 Acidiphilium cryptum JF-5 5159152 YP_001220186.1 CDS Acry_3440 NC_009468.1 153446 154381 D PFAM: plasmid encoded RepA protein; plasmid encoded RepA protein 153446..154381 Acidiphilium cryptum JF-5 5159224 YP_001220187.1 CDS Acry_3441 NC_009468.1 154742 155326 R hypothetical protein complement(154742..155326) Acidiphilium cryptum JF-5 5159154 YP_001220188.1 CDS Acry_3442 NC_009468.1 155465 156511 R hypothetical protein complement(155465..156511) Acidiphilium cryptum JF-5 5159140 YP_001220189.1 CDS Acry_3443 NC_009468.1 156542 159727 R superfamily I DNA/RNA helicase complement(156542..159727) Acidiphilium cryptum JF-5 5159231 YP_001220190.1 CDS Acry_3444 NC_009468.1 159926 160303 D hypothetical protein 159926..160303 Acidiphilium cryptum JF-5 5159166 YP_001220191.1 CDS Acry_3445 NC_009468.1 160447 161007 D hypothetical protein 160447..161007 Acidiphilium cryptum JF-5 5159164 YP_001220192.1 CDS Acry_3446 NC_009468.1 161163 163016 R PFAM: HipA domain protein; HipA domain-containing protein complement(161163..163016) Acidiphilium cryptum JF-5 5159161 YP_001220193.1 CDS Acry_3447 NC_009468.1 163196 164137 R hypothetical protein complement(163196..164137) Acidiphilium cryptum JF-5 5159138 YP_001220194.1 CDS Acry_3448 NC_009468.1 164140 164691 R hypothetical protein complement(164140..164691) Acidiphilium cryptum JF-5 5159108 YP_001220195.1 CDS Acry_3449 NC_009468.1 165544 166482 R hypothetical protein complement(165544..166482) Acidiphilium cryptum JF-5 5159237 YP_001220196.1 CDS Acry_3450 NC_009468.1 167207 167761 D hypothetical protein 167207..167761 Acidiphilium cryptum JF-5 5159235 YP_001220197.1 CDS Acry_3451 NC_009468.1 167766 168089 R hypothetical protein complement(167766..168089) Acidiphilium cryptum JF-5 5159226 YP_001220198.1 CDS Acry_3452 NC_009468.1 168288 168647 D PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 168288..168647 Acidiphilium cryptum JF-5 5159155 YP_001220199.1 CDS Acry_3453 NC_009468.1 168714 169349 R hypothetical protein complement(168714..169349) Acidiphilium cryptum JF-5 5159157 YP_001220200.1 CDS Acry_3454 NC_009468.1 169336 169698 R TIGRFAM: prevent-host-death family protein; prevent-host-death family protein complement(169336..169698) Acidiphilium cryptum JF-5 5159159 YP_001220201.1 CDS Acry_3455 NC_009468.1 170187 170666 R PFAM: protein of unknown function DUF805; hypothetical protein complement(170187..170666) Acidiphilium cryptum JF-5 5159163 YP_001220202.1 CDS Acry_3456 NC_009468.1 170868 171578 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter related complement(170868..171578) Acidiphilium cryptum JF-5 5159168 YP_001220203.1 CDS Acry_3457 NC_009468.1 171575 172339 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter related complement(171575..172339) Acidiphilium cryptum JF-5 5159167 YP_001220204.1 CDS Acry_3458 NC_009468.1 172336 173322 R PFAM: inner-membrane translocator; inner-membrane translocator complement(172336..173322) Acidiphilium cryptum JF-5 5159103 YP_001220205.1 CDS Acry_3459 NC_009468.1 173319 174188 R PFAM: inner-membrane translocator; inner-membrane translocator complement(173319..174188) Acidiphilium cryptum JF-5 5159269 YP_001220206.1 CDS Acry_3460 NC_009468.1 174309 175562 R PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(174309..175562) Acidiphilium cryptum JF-5 5159165 YP_001220207.1 CDS Acry_3461 NC_009468.1 175768 176991 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; cyclopropane-fatty-acyl-phospholipid synthase complement(175768..176991) Acidiphilium cryptum JF-5 5159158 YP_001220208.1 CDS Acry_3462 NC_009468.1 177004 178908 R PFAM: CBS domain containing protein; Cl- channel, voltage-gated family protein; CBS domain-containing protein complement(177004..178908) Acidiphilium cryptum JF-5 5159160 YP_001220209.1 CDS Acry_3464 NC_009468.1 180267 181043 R hypothetical protein complement(180267..181043) Acidiphilium cryptum JF-5 5159170 YP_001220210.1 CDS Acry_3465 NC_009468.1 181079 181648 R hypothetical protein complement(181079..181648) Acidiphilium cryptum JF-5 5159162 YP_001220211.1 CDS Acry_3466 NC_009468.1 181717 182976 R PFAM: major facilitator superfamily MFS_1; major facilitator transporter complement(181717..182976) Acidiphilium cryptum JF-5 5159243 YP_001220212.1 CDS Acry_3467 NC_009468.1 182982 183713 R PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein complement(182982..183713) Acidiphilium cryptum JF-5 5159238 YP_001220213.1 CDS Acry_3468 NC_009468.1 183799 184464 D PFAM: Rhodanese domain protein; regulatory protein, ArsR; rhodanese domain-containing protein 183799..184464 Acidiphilium cryptum JF-5 5159151 YP_001220214.1 CDS Acry_3469 NC_009468.1 185034 186230 R PFAM: putative transposase; putative transposase complement(185034..186230) Acidiphilium cryptum JF-5 5159227 YP_001220215.1 CDS Acry_3470 NC_009468.1 186235 187143 R PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; phage integrase family protein complement(186235..187143) Acidiphilium cryptum JF-5 5159206 YP_001220216.1 CDS Acry_3471 NC_009469.1 452 1051 R PFAM: cytochrome c, class I; cytochrome c, class I complement(452..1051) Acidiphilium cryptum JF-5 5159291 YP_001220217.1 CDS Acry_3472 NC_009469.1 1381 2487 R hypothetical protein complement(1381..2487) Acidiphilium cryptum JF-5 5159293 YP_001220218.1 CDS Acry_3473 NC_009469.1 2688 3359 D hypothetical protein 2688..3359 Acidiphilium cryptum JF-5 5159354 YP_001220219.1 CDS Acry_3474 NC_009469.1 3491 4162 D hypothetical protein 3491..4162 Acidiphilium cryptum JF-5 5159316 YP_001220220.1 CDS Acry_3475 NC_009469.1 4159 5154 D PFAM: peptidase U32; peptidase U32 4159..5154 Acidiphilium cryptum JF-5 5159329 YP_001220221.1 CDS Acry_3476 NC_009469.1 5151 6050 D PFAM: peptidase U32; peptidase U32 5151..6050 Acidiphilium cryptum JF-5 5159333 YP_001220222.1 CDS Acry_3477 NC_009469.1 6120 7280 D PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 6120..7280 Acidiphilium cryptum JF-5 5159339 YP_001220223.1 CDS Acry_3478 NC_009469.1 7497 8426 D with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS 7497..8426 Acidiphilium cryptum JF-5 5159340 YP_001220224.1 CDS Acry_3479 NC_009469.1 8453 9040 D with PdxST is involved in the biosynthesis of pyridoxal 5'-phosphate; PdxT catalyzes the hydrolysis of glutamine to glutamate and ammonia; PdxS utilizes the ammonia to synthesize pyridoxal 5'-phosphate; glutamine amidotransferase subunit PdxT 8453..9040 Acidiphilium cryptum JF-5 5159349 YP_001220225.1 CDS Acry_3480 NC_009469.1 9651 11534 D Catalyzes the reduction of nucleoside 5'-triphosphates to 2'-deoxynucleoside 5'-triphosphates; anaerobic ribonucleoside triphosphate reductase 9651..11534 Acidiphilium cryptum JF-5 5159303 YP_001220226.1 CDS Acry_3481 NC_009469.1 11521 12228 D TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; anaerobic ribonucleoside-triphosphate reductase activating protein 11521..12228 Acidiphilium cryptum JF-5 5159299 YP_001220227.1 CDS Acry_3482 NC_009469.1 12650 13633 D PFAM: transposase, IS4 family protein; transposase, IS4 family protein 12650..13633 Acidiphilium cryptum JF-5 5159327 YP_001220228.1 CDS Acry_3483 NC_009469.1 13617 14444 R PFAM: transposase, IS4 family protein; transposase, IS4 family protein complement(13617..14444) Acidiphilium cryptum JF-5 5159298 YP_001220229.1 CDS Acry_3484 NC_009469.1 14666 15412 R PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein complement(14666..15412) Acidiphilium cryptum JF-5 5159317 YP_001220230.1 CDS Acry_3485 NC_009469.1 15430 16977 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(15430..16977) Acidiphilium cryptum JF-5 5159348 YP_001220231.1 CDS Acry_3487 NC_009469.1 17437 18690 D PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 17437..18690 Acidiphilium cryptum JF-5 5159337 YP_001220232.1 CDS Acry_3488 NC_009469.1 19600 21297 D TIGRFAM: potassium-transporting ATPase, A subunit; PFAM: K+ transporting ATPase, A subunit; potassium-transporting ATPase, A subunit 19600..21297 Acidiphilium cryptum JF-5 5159355 YP_001220233.1 CDS Acry_3489 NC_009469.1 21309 23345 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; K+-transporting ATPase, B subunit 21309..23345 Acidiphilium cryptum JF-5 5159290 YP_001220234.1 CDS Acry_3490 NC_009469.1 23361 23960 D TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K+ transporting ATPase, KdpC subunit; potassium-transporting ATPase, C subunit 23361..23960 Acidiphilium cryptum JF-5 5159325 YP_001220235.1 CDS Acry_3491 NC_009469.1 23977 24477 D hypothetical protein 23977..24477 Acidiphilium cryptum JF-5 5159346 YP_001220236.1 CDS Acry_3492 NC_009469.1 24585 25796 D hypothetical protein 24585..25796 Acidiphilium cryptum JF-5 5159296 YP_001220237.1 CDS Acry_3493 NC_009469.1 26086 28689 D PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; Osmosensitive K+ channel His kinase sensor; UspA domain protein; osmosensitive K+ channel signal transduction histidine kinase 26086..28689 Acidiphilium cryptum JF-5 5159289 YP_001220238.1 CDS Acry_3494 NC_009469.1 28686 29381 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 28686..29381 Acidiphilium cryptum JF-5 5159300 YP_001220239.1 CDS Acry_3495 NC_009469.1 29420 29818 R hypothetical protein complement(29420..29818) Acidiphilium cryptum JF-5 5159320 YP_001220240.1 CDS Acry_3496 NC_009469.1 29818 32808 R PFAM: transposase Tn3 family protein; transposase Tn3 family protein complement(29818..32808) Acidiphilium cryptum JF-5 5159313 YP_001220241.1 CDS Acry_3497 NC_009469.1 32747 33406 R PFAM: Resolvase, N-terminal domain; resolvase domain-containing protein complement(32747..33406) Acidiphilium cryptum JF-5 5159326 YP_001220242.1 CDS Acry_3499 NC_009469.1 33812 34258 D hypothetical protein 33812..34258 Acidiphilium cryptum JF-5 5159307 YP_001220243.1 CDS Acry_3500 NC_009469.1 34259 34534 R hypothetical protein complement(34259..34534) Acidiphilium cryptum JF-5 5159350 YP_001220244.1 CDS Acry_3501 NC_009469.1 34957 35931 D PFAM: Resolvase, N-terminal domain; resolvase domain-containing protein 34957..35931 Acidiphilium cryptum JF-5 5159357 YP_001220245.1 CDS Acry_3502 NC_009469.1 36270 37616 D PFAM: transposase, IS4 family protein; transposase, IS4 family protein 36270..37616 Acidiphilium cryptum JF-5 5159351 YP_001220246.1 CDS Acry_3504 NC_009469.1 38074 38616 R antirestriction protein-like protein complement(38074..38616) Acidiphilium cryptum JF-5 5159356 YP_001220247.1 CDS Acry_3505 NC_009469.1 38619 39611 R PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; phage integrase family protein complement(38619..39611) Acidiphilium cryptum JF-5 5159322 YP_001220248.1 CDS Acry_3506 NC_009469.1 39608 40549 R PFAM: phage integrase family protein; phage integrase family protein complement(39608..40549) Acidiphilium cryptum JF-5 5159305 YP_001220249.1 CDS Acry_3507 NC_009469.1 40546 41757 R PFAM: phage integrase family protein; phage integrase family protein complement(40546..41757) Acidiphilium cryptum JF-5 5159314 YP_001220250.1 CDS Acry_3508 NC_009469.1 41817 42542 R PFAM: domain of unknown function DUF1738; hypothetical protein complement(41817..42542) Acidiphilium cryptum JF-5 5159315 YP_001220251.1 CDS Acry_3509 NC_009469.1 43114 44712 D PFAM: Integrase, catalytic region; integrase catalytic subunit 43114..44712 Acidiphilium cryptum JF-5 5159297 YP_001220252.1 CDS Acry_3510 NC_009469.1 44709 45584 D PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 44709..45584 Acidiphilium cryptum JF-5 5159306 YP_001220253.1 CDS Acry_3511 NC_009469.1 45805 46215 R PFAM: PilT protein domain protein; PilT domain-containing protein complement(45805..46215) Acidiphilium cryptum JF-5 5159319 YP_001220254.1 CDS Acry_3512 NC_009469.1 46212 46454 R PFAM: Rv0623 family protein transcription factor; transcription factor complement(46212..46454) Acidiphilium cryptum JF-5 5159301 YP_001220255.1 CDS Acry_3513 NC_009469.1 46521 47201 R PFAM: NERD domain protein; NERD domain-containing protein complement(46521..47201) Acidiphilium cryptum JF-5 5159341 YP_001220256.1 CDS Acry_3514 NC_009469.1 47274 47615 R hypothetical protein complement(47274..47615) Acidiphilium cryptum JF-5 5159330 YP_001220257.1 CDS Acry_3515 NC_009469.1 47612 48271 R PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(47612..48271) Acidiphilium cryptum JF-5 5159334 YP_001220258.1 CDS Acry_3516 NC_009469.1 48491 48832 D PFAM: protein of unknown function DUF891; hypothetical protein 48491..48832 Acidiphilium cryptum JF-5 5159344 YP_001220259.1 CDS Acry_3517 NC_009469.1 48829 49110 D PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 48829..49110 Acidiphilium cryptum JF-5 5159345 YP_001220260.1 CDS Acry_3518 NC_009469.1 49198 50559 R PFAM: replication protein C; replication protein C complement(49198..50559) Acidiphilium cryptum JF-5 5159304 YP_001220261.1 CDS Acry_3519 NC_009469.1 50726 51496 R hypothetical protein complement(50726..51496) Acidiphilium cryptum JF-5 5159347 YP_001220262.1 CDS Acry_3520 NC_009469.1 51980 52666 D PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase, catalytic 51980..52666 Acidiphilium cryptum JF-5 5159343 YP_001220263.1 CDS Acry_3521 NC_009469.1 52647 53012 D PFAM: VIRB2 type IV secretion fmaily protein; VIRB2 type IV secretion fmaily protein 52647..53012 Acidiphilium cryptum JF-5 5159328 YP_001220264.1 CDS Acry_3522 NC_009469.1 53016 53348 D PFAM: type IV secretory pathway, VirB3 family protein; type IV secretion system protein VirB3 53016..53348 Acidiphilium cryptum JF-5 5159302 YP_001220265.1 CDS Acry_3523 NC_009469.1 53338 55731 D TIGRFAM: type IV secretion/conjugal transfer ATPase, VirB4 family; PFAM: CagE, TrbE, VirB component of type IV transporter system; type IV secretion system protein VirB4 53338..55731 Acidiphilium cryptum JF-5 5159342 YP_001220266.1 CDS Acry_3524 NC_009469.1 55741 56499 D PFAM: type IV secretion system family protein; type IV secretion system family protein 55741..56499 Acidiphilium cryptum JF-5 5159336 YP_001220267.1 CDS Acry_3525 NC_009469.1 56729 57616 D PFAM: TrbL/VirB6 plasmid conjugal transfer protein; type IV secretion system protein VirB6 56729..57616 Acidiphilium cryptum JF-5 5159324 YP_001220268.1 CDS Acry_3526 NC_009469.1 57795 58496 D PFAM: VirB8 family protein; type IV secretion system protein VirB8 57795..58496 Acidiphilium cryptum JF-5 5159335 YP_001220269.1 CDS Acry_3527 NC_009469.1 58493 59383 D PFAM: Conjugal transfer protein TrbG/VirB9/CagX; type IV secretion system protein VirB9 58493..59383 Acidiphilium cryptum JF-5 5159292 YP_001220270.1 CDS Acry_3528 NC_009469.1 59373 60509 D PFAM: conjugation TrbI family protein; conjugation TrbI family protein 59373..60509 Acidiphilium cryptum JF-5 5159309 YP_001220271.1 CDS Acry_3529 NC_009469.1 60506 60826 D hypothetical protein 60506..60826 Acidiphilium cryptum JF-5 5159312 YP_001220272.1 CDS Acry_3530 NC_009469.1 60823 61890 D ATPase; type IV secretion system protein VirB11 60823..61890 Acidiphilium cryptum JF-5 5159321 YP_001220273.1 CDS Acry_3531 NC_009469.1 61890 63710 D VirD4 family; conjugal transfer coupling protein TraG 61890..63710 Acidiphilium cryptum JF-5 5159352 YP_001220274.1 CDS Acry_3532 NC_009469.1 63838 64320 R PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator complement(63838..64320) Acidiphilium cryptum JF-5 5159323 YP_001220275.1 CDS Acry_3533 NC_009469.1 64386 65438 D PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme, beta subunit 64386..65438 Acidiphilium cryptum JF-5 5159338 YP_001220276.1 CDS Acry_3534 NC_009469.1 65435 66604 D TIGRFAM: amidohydrolase; PFAM: peptidase M20; amidohydrolase 65435..66604 Acidiphilium cryptum JF-5 5159311 YP_001220277.1 CDS Acry_3535 NC_009469.1 66601 67914 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 66601..67914 Acidiphilium cryptum JF-5 5159294 YP_001220278.1 CDS Acry_3536 NC_009469.1 68011 69267 R PFAM: UMUC domain protein DNA-repair protein; DNA-repair protein complement(68011..69267) Acidiphilium cryptum JF-5 5159287 YP_001220279.1 CDS Acry_3537 NC_009469.1 69273 69662 R hypothetical protein complement(69273..69662) Acidiphilium cryptum JF-5 5159331 YP_001220280.1 CDS Acry_3538 NC_009469.1 69707 70417 D PFAM: protein of unknown function DUF159; hypothetical protein 69707..70417 Acidiphilium cryptum JF-5 5159286 YP_001220281.1 CDS Acry_3539 NC_009469.1 71277 72293 R hypothetical protein complement(71277..72293) Acidiphilium cryptum JF-5 5159285 YP_001220282.1 CDS Acry_3540 NC_009469.1 72734 73360 D hypothetical protein 72734..73360 Acidiphilium cryptum JF-5 5159308 YP_001220283.1 CDS Acry_3541 NC_009469.1 73588 75783 R TIGRFAM: helicase, RecD/TraA family; SMART: Helix-hairpin-helix DNA-binding, class 1; AAA ATPase; RecD/TraA family helicase complement(73588..75783) Acidiphilium cryptum JF-5 5159310 YP_001220284.1 CDS Acry_3542 NC_009469.1 76117 81168 R PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase complement(76117..81168) Acidiphilium cryptum JF-5 5159295 YP_001220285.1 CDS Acry_3543 NC_009469.1 81216 81554 R hypothetical protein complement(81216..81554) Acidiphilium cryptum JF-5 5159278 YP_001220286.1 CDS Acry_3544 NC_009469.1 81761 82492 D hypothetical protein 81761..82492 Acidiphilium cryptum JF-5 5159318 YP_001220287.1 CDS Acry_3545 NC_009469.1 82502 83392 D hypothetical protein 82502..83392 Acidiphilium cryptum JF-5 5159282 YP_001220288.1 CDS Acry_3546 NC_009469.1 83629 84093 D hypothetical protein 83629..84093 Acidiphilium cryptum JF-5 5159279 YP_001220289.1 CDS Acry_3547 NC_009469.1 84098 84418 D hypothetical protein 84098..84418 Acidiphilium cryptum JF-5 5159277 YP_001220290.1 CDS Acry_3548 NC_009469.1 84795 85472 R hypothetical protein complement(84795..85472) Acidiphilium cryptum JF-5 5159280 YP_001220291.1 CDS Acry_3549 NC_009469.1 85472 86161 R hypothetical protein complement(85472..86161) Acidiphilium cryptum JF-5 5159283 YP_001220292.1 CDS Acry_3552 NC_009469.1 87820 88932 R TIGRFAM: CitB domain protein; CitB domain-containing protein complement(87820..88932) Acidiphilium cryptum JF-5 5159284 YP_001220293.1 CDS Acry_3553 NC_009470.1 838 1383 R PFAM: Resolvase, N-terminal domain; Resolvase helix-turn-helix domain protein; resolvase domain-containing protein complement(838..1383) Acidiphilium cryptum JF-5 5159381 YP_001220294.1 CDS Acry_3554 NC_009470.1 2471 2728 D hypothetical protein 2471..2728 Acidiphilium cryptum JF-5 5159390 YP_001220295.1 CDS Acry_3555 NC_009470.1 2934 3404 R PFAM: GCN5-related N-acetyltransferase; GCN5-related N-acetyltransferase complement(2934..3404) Acidiphilium cryptum JF-5 5159358 YP_001220296.1 CDS Acry_3556 NC_009470.1 4269 4682 R hypothetical protein complement(4269..4682) Acidiphilium cryptum JF-5 5159370 YP_001220297.1 CDS Acry_3557 NC_009470.1 4667 6574 R PFAM: Relaxase/mobilization nuclease family protein; relaxase/mobilization nuclease family protein complement(4667..6574) Acidiphilium cryptum JF-5 5159359 YP_001220298.1 CDS Acry_3558 NC_009470.1 6658 6939 D hypothetical protein 6658..6939 Acidiphilium cryptum JF-5 5159364 YP_001220299.1 CDS Acry_3559 NC_009470.1 7053 7466 D hypothetical protein 7053..7466 Acidiphilium cryptum JF-5 5159369 YP_001220300.1 CDS Acry_3560 NC_009470.1 7483 9297 D Type IV secretory pathway VirD4 components-like protein 7483..9297 Acidiphilium cryptum JF-5 5159360 YP_001220301.1 CDS Acry_3561 NC_009470.1 9281 9850 D hypothetical protein 9281..9850 Acidiphilium cryptum JF-5 5159365 YP_001220302.1 CDS Acry_3562 NC_009470.1 10080 10706 D PFAM: Resolvase, N-terminal domain; resolvase domain-containing protein 10080..10706 Acidiphilium cryptum JF-5 5159366 YP_001220303.1 CDS Acry_3563 NC_009470.1 10734 11249 R PFAM: protein of unknown function DUF156; hypothetical protein complement(10734..11249) Acidiphilium cryptum JF-5 5159362 YP_001220304.1 CDS Acry_3564 NC_009470.1 11540 12913 D PFAM: natural resistance-associated macrophage protein; natural resistance-associated macrophage protein 11540..12913 Acidiphilium cryptum JF-5 5159361 YP_001220305.1 CDS Acry_3565 NC_009470.1 12941 13237 D hypothetical protein 12941..13237 Acidiphilium cryptum JF-5 5159382 YP_001220306.1 CDS Acry_3566 NC_009470.1 13258 13974 D PFAM: MgtC/SapB transporter; MgtC/SapB transporter 13258..13974 Acidiphilium cryptum JF-5 5159380 YP_001220307.1 CDS Acry_3567 NC_009470.1 14027 16660 D PFAM: transposase Tn3 family protein; transposase Tn3 family protein 14027..16660 Acidiphilium cryptum JF-5 5159374 YP_001220308.1 CDS Acry_3568 NC_009470.1 16679 19669 R PFAM: transposase Tn3 family protein; transposase Tn3 family protein complement(16679..19669) Acidiphilium cryptum JF-5 5159367 YP_001220309.1 CDS Acry_3569 NC_009470.1 19769 20977 R PFAM: transposase, mutator type; transposase, mutator type complement(19769..20977) Acidiphilium cryptum JF-5 5159373 YP_001220310.1 CDS Acry_3570 NC_009470.1 21120 21713 R PFAM: Resolvase, N-terminal domain; resolvase domain-containing protein complement(21120..21713) Acidiphilium cryptum JF-5 5159372 YP_001220311.1 CDS Acry_3572 NC_009470.1 22457 22942 D hypothetical protein 22457..22942 Acidiphilium cryptum JF-5 5159377 YP_001220312.1 CDS Acry_3573 NC_009470.1 22936 23262 D hypothetical protein 22936..23262 Acidiphilium cryptum JF-5 5159386 YP_001220313.1 CDS Acry_3574 NC_009470.1 23270 24100 D hypothetical protein 23270..24100 Acidiphilium cryptum JF-5 5159375 YP_001220314.1 CDS Acry_3575 NC_009470.1 24356 25762 D TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase, IS891/IS1136/IS1341 family; transposase, IS605 OrfB; IS605 family transposase OrfB 24356..25762 Acidiphilium cryptum JF-5 5159383 YP_001220315.1 CDS Acry_3576 NC_009470.1 25913 26179 R hypothetical protein complement(25913..26179) Acidiphilium cryptum JF-5 5159384 YP_001220316.1 CDS Acry_3577 NC_009470.1 26565 27131 R hypothetical protein complement(26565..27131) Acidiphilium cryptum JF-5 5159379 YP_001220317.1 CDS Acry_3578 NC_009470.1 27154 28509 R PFAM: replication protein C; replication protein C complement(27154..28509) Acidiphilium cryptum JF-5 5159363 YP_001220318.1 CDS Acry_3579 NC_009470.1 29311 29994 D ATPase involved in chromosome partitioning-like protein 29311..29994 Acidiphilium cryptum JF-5 5159371 YP_001220319.1 CDS Acry_3580 NC_009470.1 30434 31087 D hypothetical protein 30434..31087 Acidiphilium cryptum JF-5 5159389 YP_001220320.1 CDS Acry_3581 NC_009470.1 31098 32336 R hypothetical protein complement(31098..32336) Acidiphilium cryptum JF-5 5159385 YP_001220321.1 CDS Acry_3582 NC_009470.1 32323 32787 R PFAM: DNA mismatch endonuclease vsr; DNA mismatch endonuclease vsr complement(32323..32787) Acidiphilium cryptum JF-5 5159387 YP_001220322.1 CDS Acry_3583 NC_009470.1 32780 34243 R TIGRFAM: DNA-cytosine methyltransferase; PFAM: C-5 cytosine-specific DNA methylase; DNA-cytosine methyltransferase complement(32780..34243) Acidiphilium cryptum JF-5 5159378 YP_001220323.1 CDS Acry_3584 NC_009470.1 34246 35343 D hypothetical protein 34246..35343 Acidiphilium cryptum JF-5 5159368 YP_001220324.1 CDS Acry_3585 NC_009470.1 35674 36135 R hypothetical protein complement(35674..36135) Acidiphilium cryptum JF-5 5159388 YP_001220325.1 CDS Acry_3587 NC_009471.1 525 5624 R exonuclease V subunit alpha complement(525..5624) Acidiphilium cryptum JF-5 5159405 YP_001220326.1 CDS Acry_3588 NC_009471.1 5624 5956 R hypothetical protein complement(5624..5956) Acidiphilium cryptum JF-5 5159406 YP_001220327.1 CDS Acry_3589 NC_009471.1 6694 7419 D hypothetical protein 6694..7419 Acidiphilium cryptum JF-5 5159421 YP_001220328.1 CDS Acry_3590 NC_009471.1 7583 7861 D PFAM: plasmid stabilization system; plasmid stabilization system protein 7583..7861 Acidiphilium cryptum JF-5 5159422 YP_001220329.1 CDS Acry_3591 NC_009471.1 8654 9310 D PFAM: protein of unknown function DUF1555; hypothetical protein 8654..9310 Acidiphilium cryptum JF-5 5159420 YP_001220330.1 CDS Acry_3592 NC_009471.1 10449 10988 R hypothetical protein complement(10449..10988) Acidiphilium cryptum JF-5 5159418 YP_001220331.1 CDS Acry_3593 NC_009471.1 11355 12896 D PFAM: Integrase, catalytic region; integrase catalytic subunit 11355..12896 Acidiphilium cryptum JF-5 5159398 YP_001220332.1 CDS Acry_3594 NC_009471.1 12908 13660 D PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein 12908..13660 Acidiphilium cryptum JF-5 5159409 YP_001220333.1 CDS Acry_3595 NC_009471.1 13772 14719 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 13772..14719 Acidiphilium cryptum JF-5 5159400 YP_001220334.1 CDS Acry_3596 NC_009471.1 14884 15282 R hypothetical protein complement(14884..15282) Acidiphilium cryptum JF-5 5159417 YP_001220335.1 CDS Acry_3597 NC_009471.1 15369 15755 R transposase complement(15369..15755) Acidiphilium cryptum JF-5 5159419 YP_001220336.1 CDS Acry_3598 NC_009471.1 16045 16371 R PFAM: PemK family protein; transcriptional modulator of MazE/toxin, MazF complement(16045..16371) Acidiphilium cryptum JF-5 5159407 YP_001220337.1 CDS Acry_3599 NC_009471.1 16371 16634 R PFAM: SpoVT/AbrB domain protein; transcriptional regulator/antitoxin, MazE complement(16371..16634) Acidiphilium cryptum JF-5 5159401 YP_001220338.1 CDS Acry_3600 NC_009471.1 16863 17522 D ATPase involved in chromosome partitioning-like protein 16863..17522 Acidiphilium cryptum JF-5 5159414 YP_001220339.1 CDS Acry_3601 NC_009471.1 17537 17812 D hypothetical protein 17537..17812 Acidiphilium cryptum JF-5 5159415 YP_001220340.1 CDS Acry_3603 NC_009471.1 19545 19934 D Type IV secretory pathway VirD4 components-like protein 19545..19934 Acidiphilium cryptum JF-5 5159404 YP_001220341.1 CDS Acry_3605 NC_009471.1 20298 23288 R PFAM: transposase Tn3 family protein; transposase Tn3 family protein complement(20298..23288) Acidiphilium cryptum JF-5 5159402 YP_001220342.1 CDS Acry_3606 NC_009471.1 23227 23886 R PFAM: Resolvase, N-terminal domain; resolvase domain-containing protein complement(23227..23886) Acidiphilium cryptum JF-5 5159411 YP_001220343.1 CDS Acry_3608 NC_009471.1 24319 25728 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; general substrate transporter 24319..25728 Acidiphilium cryptum JF-5 5159410 YP_001220344.1 CDS Acry_3609 NC_009471.1 26128 28587 D PFAM: TonB-dependent receptor; TonB-dependent receptor 26128..28587 Acidiphilium cryptum JF-5 5159391 YP_001220345.1 CDS Acry_3610 NC_009471.1 28668 29333 D PFAM: MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 28668..29333 Acidiphilium cryptum JF-5 5159396 YP_001220346.1 CDS Acry_3611 NC_009471.1 29380 29670 D hypothetical protein 29380..29670 Acidiphilium cryptum JF-5 5159413 YP_001220347.1 CDS Acry_3612 NC_009471.1 30222 31430 D PFAM: transposase, mutator type; transposase, mutator type 30222..31430 Acidiphilium cryptum JF-5 5159394 YP_001220348.1 CDS Acry_3613 NC_009471.1 31513 32640 D PFAM: transposase, mutator type; transposase, mutator type 31513..32640 Acidiphilium cryptum JF-5 5159412 YP_001220349.1 CDS Acry_3614 NC_009471.1 32743 33822 R transposase complement(32743..33822) Acidiphilium cryptum JF-5 5159395 YP_001220350.1 CDS Acry_3615 NC_009471.1 33928 35151 R PFAM: transposase, mutator type; transposase, mutator type complement(33928..35151) Acidiphilium cryptum JF-5 5159403 YP_001220351.1 CDS Acry_3616 NC_009471.1 35342 35629 D transposase 35342..35629 Acidiphilium cryptum JF-5 5159397 YP_001220352.1 CDS Acry_3617 NC_009471.1 35908 37095 D hypothetical protein 35908..37095 Acidiphilium cryptum JF-5 5159392 YP_001220353.1 CDS Acry_3618 NC_009472.1 66 407 R hypothetical protein complement(66..407) Acidiphilium cryptum JF-5 5159427 YP_001220354.1 CDS Acry_3619 NC_009472.1 1194 4442 R exonuclease V subunit alpha complement(1194..4442) Acidiphilium cryptum JF-5 5159425 YP_001220355.1 CDS Acry_3620 NC_009472.1 4766 5308 D hypothetical protein 4766..5308 Acidiphilium cryptum JF-5 5159431 YP_001220356.1 CDS Acry_3622 NC_009472.1 6671 6925 R hypothetical protein complement(6671..6925) Acidiphilium cryptum JF-5 5159432 YP_001220357.1 CDS Acry_3623 NC_009472.1 7238 7528 R hypothetical protein complement(7238..7528) Acidiphilium cryptum JF-5 5159428 YP_001220358.1 CDS Acry_3624 NC_009472.1 7506 7745 R hypothetical protein complement(7506..7745) Acidiphilium cryptum JF-5 5159426 YP_001220359.1 CDS Acry_3625 NC_009472.1 7746 8192 R PFAM: protein of unknown function DUF29; hypothetical protein complement(7746..8192) Acidiphilium cryptum JF-5 5159430 YP_001220360.1 CDS Acry_3626 NC_009472.1 8189 8389 R hypothetical protein complement(8189..8389) Acidiphilium cryptum JF-5 5159423 YP_001220361.1 CDS Acry_3627 NC_009472.1 8370 8681 R PFAM: plasmid stabilization system; plasmid stabilization system protein complement(8370..8681) Acidiphilium cryptum JF-5 5159429 YP_001220362.1 CDS Acry_3628 NC_009473.1 897 1094 R hypothetical protein complement(897..1094) Acidiphilium cryptum JF-5 5159434 YP_001220363.1 CDS Acry_3629 NC_009473.1 2806 3369 R hypothetical protein complement(2806..3369) Acidiphilium cryptum JF-5 5159436 YP_001220364.1 CDS Acry_3630 NC_009473.1 3371 4456 R PFAM: MobA/MobL protein; MobA/MobL protein complement(3371..4456) Acidiphilium cryptum JF-5 5159435 YP_001220365.1 CDS Acry_3631 NC_009473.1 4650 4973 D hypothetical protein 4650..4973 Acidiphilium cryptum JF-5 5159437 YP_001220366.1 CDS Acry_3632 NC_009473.1 5065 5613 D hypothetical protein 5065..5613 Acidiphilium cryptum JF-5 5159433 YP_001220367.1 CDS Acry_3633 NC_009474.1 1120 1605 D hypothetical protein 1120..1605 Acidiphilium cryptum JF-5 5159440 YP_001220368.1 CDS Acry_3634 NC_009474.1 1770 2378 D hypothetical protein 1770..2378 Acidiphilium cryptum JF-5 5159443 YP_001220369.1 CDS Acry_3636 NC_009474.1 3385 3825 R PFAM: protein of unknown function DUF29; hypothetical protein complement(3385..3825) Acidiphilium cryptum JF-5 5159439 YP_001220370.1 CDS Acry_3637 NC_009474.1 3839 4234 R hypothetical protein complement(3839..4234) Acidiphilium cryptum JF-5 5159438 YP_001220371.1 CDS Acry_3638 NC_009474.1 4247 4822 R hypothetical protein complement(4247..4822) Acidiphilium cryptum JF-5 5159441 YP_001233149.1 CDS dnaA NC_009484.1 261 1709 D binds to the dnaA-box as an ATP-bound complex at the origin of replication during the initiation of chromosomal replication; can also affect transcription of multiple genes including itself.; chromosomal replication initiation protein 261..1709 Acidiphilium cryptum JF-5 5160411 YP_001233150.1 CDS Acry_0002 NC_009484.1 1737 2588 R PFAM: putative esterase; carboxylesterase complement(1737..2588) Acidiphilium cryptum JF-5 5159944 YP_001233151.1 CDS Acry_0003 NC_009484.1 2902 3105 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 2902..3105 Acidiphilium cryptum JF-5 5159945 YP_001233152.1 CDS Acry_0004 NC_009484.1 3693 4202 D PFAM: regulatory protein, MerR; MerR family transcriptional regulator 3693..4202 Acidiphilium cryptum JF-5 5161105 YP_001233153.1 CDS Acry_0005 NC_009484.1 4227 5363 D TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 4227..5363 Acidiphilium cryptum JF-5 5161106 YP_001233154.1 CDS Acry_0006 NC_009484.1 5363 7723 D PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-binding 3-hydroxyacyl-CoA dehydrogenase 5363..7723 Acidiphilium cryptum JF-5 5161158 YP_001233155.1 CDS Acry_0007 NC_009484.1 7746 9536 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 7746..9536 Acidiphilium cryptum JF-5 5161159 YP_001233156.1 CDS Acry_0008 NC_009484.1 9556 10113 R PFAM: PEBP family protein; PEBP family protein complement(9556..10113) Acidiphilium cryptum JF-5 5160886 YP_001233157.1 CDS Acry_0009 NC_009484.1 10125 10877 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(10125..10877) Acidiphilium cryptum JF-5 5160887 YP_001233158.1 CDS Acry_0010 NC_009484.1 10874 11788 R ABC-type molybdate transport system periplasmic component-like protein complement(10874..11788) Acidiphilium cryptum JF-5 5159584 YP_001233159.1 CDS Acry_0011 NC_009484.1 11903 12280 D PFAM: regulatory protein, LysR; ModE family transcriptional regulator 11903..12280 Acidiphilium cryptum JF-5 5159585 YP_001233160.1 CDS Acry_0012 NC_009484.1 12360 12881 D PFAM: TspO/MBR family protein; TspO and MBR like protein 12360..12881 Acidiphilium cryptum JF-5 5159816 YP_001233161.1 CDS Acry_0013 NC_009484.1 12925 13539 D hypothetical protein 12925..13539 Acidiphilium cryptum JF-5 5159817 YP_001233162.1 CDS Acry_0014 NC_009484.1 13684 14235 D PFAM: GPR1/FUN34/yaaH family protein; GPR1/FUN34/yaaH family protein 13684..14235 Acidiphilium cryptum JF-5 5160037 YP_001233163.1 CDS Acry_0015 NC_009484.1 14489 14716 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin arginine-targeting protein translocase 14489..14716 Acidiphilium cryptum JF-5 5160038 YP_001233164.1 CDS Acry_0016 NC_009484.1 14727 14984 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; twin arginine-targeting protein translocase 14727..14984 Acidiphilium cryptum JF-5 5160257 YP_001233165.1 CDS Acry_0017 NC_009484.1 15001 15642 D catalyzes the formation of diketo methylthiopentyl phosphate from methylribulose phosphate in the methionine salvage pathway; methylthioribulose-1-phosphate dehydratase 15001..15642 Acidiphilium cryptum JF-5 5160258 YP_001233166.1 CDS Acry_0018 NC_009484.1 15639 16181 D PFAM: Acireductone dioxygenase, ARD; acireductone dioxygenase 15639..16181 Acidiphilium cryptum JF-5 5162565 YP_001233167.1 CDS Acry_0019 NC_009484.1 16198 16896 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 1; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase; PFAM: Haloacid dehalogenase domain protein hydrolase; 2,3-diketo-5-methylthio-1-phosphopentane phosphatase 16198..16896 Acidiphilium cryptum JF-5 5162566 YP_001233168.1 CDS Acry_0020 NC_009484.1 16908 18437 D TIGRFAM: apolipoprotein N-acyltransferase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; apolipoprotein N-acyltransferase 16908..18437 Acidiphilium cryptum JF-5 5162439 YP_001233169.1 CDS Acry_0021 NC_009484.1 18742 19227 D PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 18742..19227 Acidiphilium cryptum JF-5 5162440 YP_001233170.1 CDS Acry_0022 NC_009484.1 19292 19963 D PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 19292..19963 Acidiphilium cryptum JF-5 5159738 YP_001233171.1 CDS Acry_0023 NC_009484.1 19977 21551 D PFAM: Heparinase II/III family protein; heparinase II/III family protein 19977..21551 Acidiphilium cryptum JF-5 5159739 YP_001233172.1 CDS Acry_0024 NC_009484.1 21556 22554 D TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; KR; UDP-glucose 4-epimerase 21556..22554 Acidiphilium cryptum JF-5 5160055 YP_001233173.1 CDS Acry_0025 NC_009484.1 22562 23686 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 22562..23686 Acidiphilium cryptum JF-5 5160056 YP_001233174.1 CDS Acry_0026 NC_009484.1 23698 24165 D PFAM: CreA family protein; CreA family protein 23698..24165 Acidiphilium cryptum JF-5 5160621 YP_001233175.1 CDS purH NC_009484.1 24181 25722 D involved in de novo purine biosynthesis; bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 24181..25722 Acidiphilium cryptum JF-5 5160622 YP_001233176.1 CDS Acry_0028 NC_009484.1 25728 26285 D PFAM: Carboxymuconolactone decarboxylase; carboxymuconolactone decarboxylase 25728..26285 Acidiphilium cryptum JF-5 5159444 YP_001233177.1 CDS Acry_0029 NC_009484.1 26325 28286 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit B complement(26325..28286) Acidiphilium cryptum JF-5 5159445 YP_001233178.1 CDS cmk NC_009484.1 28312 28950 R Catalyzes the formation of (d)CDP from ATP and (d)CMP; cytidylate kinase complement(28312..28950) Acidiphilium cryptum JF-5 5161080 YP_001233179.1 CDS Acry_0031 NC_009484.1 28947 30284 R catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis; 3-phosphoshikimate 1-carboxyvinyltransferase complement(28947..30284) Acidiphilium cryptum JF-5 5161081 YP_001233180.1 CDS Acry_0032 NC_009484.1 30423 30746 D hypothetical protein 30423..30746 Acidiphilium cryptum JF-5 5160752 YP_001233181.1 CDS Acry_0033 NC_009484.1 30796 31047 R hypothetical protein complement(30796..31047) Acidiphilium cryptum JF-5 5160753 YP_001233182.1 CDS Acry_0034 NC_009484.1 31136 32365 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 31136..32365 Acidiphilium cryptum JF-5 5161386 YP_001233183.1 CDS Acry_0035 NC_009484.1 32380 33219 D hypothetical protein 32380..33219 Acidiphilium cryptum JF-5 5161387 YP_001233184.1 CDS Acry_0036 NC_009484.1 33219 34070 D TIGRFAM: putative ribonuclease BN; PFAM: ribonuclease BN; putative ribonuclease BN 33219..34070 Acidiphilium cryptum JF-5 5161234 YP_001233185.1 CDS Acry_0037 NC_009484.1 34256 36493 D TIGRFAM: VacB and RNase II family 3'-5' exoribonuclease; ribonuclease R; PFAM: ribonuclease II; SMART: RNA binding S1 domain protein; ribonuclease R 34256..36493 Acidiphilium cryptum JF-5 5161235 YP_001233186.1 CDS Acry_0038 NC_009484.1 36490 38094 D PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; C-terminal processing peptidase 36490..38094 Acidiphilium cryptum JF-5 5161498 YP_001233187.1 CDS rpmG NC_009484.1 38140 38307 D in Escherichia coli BM108, a mutation that results in lack of L33 synthesis had no effect on ribosome synthesis or function; there are paralogous genes in several bacterial genomes, and a CXXC motif for zinc binding and an upstream regulation region of the paralog lacking this motif that are regulated by zinc similar to other ribosomal proteins like L31; the proteins in this group lack the CXXC motif; 50S ribosomal protein L33 38140..38307 Acidiphilium cryptum JF-5 5161499 YP_001233188.1 CDS Acry_0040 NC_009484.1 38471 39610 R TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase, family 19; lipid-A-disaccharide synthase complement(38471..39610) Acidiphilium cryptum JF-5 5162382 YP_001233189.1 CDS Acry_0041 NC_009484.1 39607 40482 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase complement(39607..40482) Acidiphilium cryptum JF-5 5162383 YP_001233190.1 CDS Acry_0042 NC_009484.1 40479 41000 R hypothetical protein complement(40479..41000) Acidiphilium cryptum JF-5 5160641 YP_001233191.1 CDS Acry_0043 NC_009484.1 41089 42816 R PFAM: cytochrome c, class I; gluconate 2-dehydrogenase complement(41089..42816) Acidiphilium cryptum JF-5 5160642 YP_001233192.1 CDS Acry_0044 NC_009484.1 43357 44583 R catalyzes the formation of 5-aminolevulinate from succinyl-CoA and glycine; 5-aminolevulinate synthase complement(43357..44583) Acidiphilium cryptum JF-5 5161360 YP_001233193.1 CDS thyX NC_009484.1 44723 45655 R flavin dependent thymidylate synthase; ThyX; thymidylate synthase complementing protein; catalyzes the formation of dTMP and tetrahydrofolate from dUMP and methylenetetrahydrofolate; the enzyme from Mycobacterium tuberculosis forms homotetramers; uses FAD as a cofactor; FAD-dependent thymidylate synthase complement(44723..45655) Acidiphilium cryptum JF-5 5162270 YP_001233194.1 CDS Acry_0046 NC_009484.1 46354 46794 R hypothetical protein complement(46354..46794) Acidiphilium cryptum JF-5 5162041 YP_001233195.1 CDS Acry_0047 NC_009484.1 46791 47420 R PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(46791..47420) Acidiphilium cryptum JF-5 5162042 YP_001233196.1 CDS Acry_0048 NC_009484.1 47474 48880 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF-family N-terminal domain protein; carbohydrate kinase 47474..48880 Acidiphilium cryptum JF-5 5159539 YP_001233197.1 CDS Acry_0049 NC_009484.1 49470 50570 D TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; glycine cleavage system T protein 49470..50570 Acidiphilium cryptum JF-5 5159540 YP_001233198.1 CDS Acry_0050 NC_009484.1 50582 50956 D TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; glycine cleavage system H protein 50582..50956 Acidiphilium cryptum JF-5 5160404 YP_001233199.1 CDS Acry_0051 NC_009484.1 50971 53853 D acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; glycine dehydrogenase 50971..53853 Acidiphilium cryptum JF-5 5160405 YP_001233200.1 CDS Acry_0052 NC_009484.1 53949 54524 D PFAM: Lipocalin family protein; lipocalin family protein 53949..54524 Acidiphilium cryptum JF-5 5159592 YP_001233201.1 CDS Acry_0053 NC_009484.1 54608 56350 D PFAM: peptidase S49; acid phosphatase 54608..56350 Acidiphilium cryptum JF-5 5159593 YP_001233202.1 CDS Acry_0054 NC_009484.1 56586 57107 D MraZ; UPF0040; crystal structure shows similarity to AbrB; cell division protein MraZ 56586..57107 Acidiphilium cryptum JF-5 5160336 YP_001233203.1 CDS mraW NC_009484.1 57104 58045 D TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; S-adenosyl-methyltransferase MraW 57104..58045 Acidiphilium cryptum JF-5 5160337 YP_001233204.1 CDS Acry_0056 NC_009484.1 58042 58911 D secreted (periplasmic) protein-like protein 58042..58911 Acidiphilium cryptum JF-5 5160558 YP_001233205.1 CDS Acry_0057 NC_009484.1 58908 60998 D PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase 58908..60998 Acidiphilium cryptum JF-5 5160559 YP_001233206.1 CDS murE NC_009484.1 61003 62448 D involved in cell wall formation; peptidoglycan synthesis; cytoplasmic enzyme; catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-aceylmuramoyl-l-alanyl-d-glutamate; UDP-N-acetylmuramoylalanyl-D-glutamate--2, 6-diaminopimelate ligase 61003..62448 Acidiphilium cryptum JF-5 5160816 YP_001233207.1 CDS Acry_0059 NC_009484.1 62445 63800 D TIGRFAM: UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-diaminopimelate--D-alanyl-D-alanyl ligase 62445..63800 Acidiphilium cryptum JF-5 5160817 YP_001233208.1 CDS mraY NC_009484.1 63800 64888 D First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan; phospho-N-acetylmuramoyl-pentapeptide- transferase 63800..64888 Acidiphilium cryptum JF-5 5160779 YP_001233209.1 CDS murD NC_009484.1 64885 66270 D UDP-N-acetylmuramoylalanine--D-glutamate ligase; involved in peptidoglycan biosynthesis; cytoplasmic; catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine during cell wall formation; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 64885..66270 Acidiphilium cryptum JF-5 5160780 YP_001233210.1 CDS Acry_0062 NC_009484.1 66270 67433 D PFAM: cell cycle protein; cell cycle protein 66270..67433 Acidiphilium cryptum JF-5 5159594 YP_001233211.1 CDS murG NC_009484.1 67430 68536 D UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N-acetylglucosamine transferase; involved in cell wall formation; inner membrane-associated; last step of peptidoglycan synthesis; undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase 67430..68536 Acidiphilium cryptum JF-5 5159595 YP_001233212.1 CDS murC NC_009484.1 68533 69972 D Catalyzes the formation of UDP-N-acetylmuramoyl-L-alanine from UDP-N-acetylmuramate and L-alanine in peptidoglycan synthesis; UDP-N-acetylmuramate--L-alanine ligase 68533..69972 Acidiphilium cryptum JF-5 5160151 YP_001233213.1 CDS murB NC_009484.1 69969 70898 D catalyzes the reduction of UDP-N-acetylglucosamine enolpyruvate to form UDP-N-acetylmuramate in peptidoglycan biosynthesis; UDP-N-acetylenolpyruvoylglucosamine reductase 69969..70898 Acidiphilium cryptum JF-5 5160152 YP_001233214.1 CDS ddl NC_009484.1 70895 71800 D D-alanine--D-alanine ligase; DdlA; DdlB; cytoplasmic; catalyzes the formation of D-alanyl-D-alanine from two D-alanines in peptidoglycan synthesis; there are two forms of this enzyme in Escherichia coli; D-alanine--D-alanine ligase 70895..71800 Acidiphilium cryptum JF-5 5162594 YP_001233215.1 CDS Acry_0067 NC_009484.1 71788 72666 D PFAM: cell division protein FtsQ; Polypeptide-transport-associated domain protein, FtsQ-type; polypeptide-transport-associated domain-containing protein 71788..72666 Acidiphilium cryptum JF-5 5162595 YP_001233216.1 CDS Acry_0068 NC_009484.1 72674 73987 D PFAM: cell division protein FtsA; cell division protein FtsA 72674..73987 Acidiphilium cryptum JF-5 5162540 YP_001233217.1 CDS Acry_0069 NC_009484.1 74052 75620 D GTPase; similar structure to tubulin; forms ring-shaped polymers at the site of cell division; other proteins such as FtsA, ZipA, and ZapA, interact with and regulate FtsZ function; cell division protein FtsZ 74052..75620 Acidiphilium cryptum JF-5 5162541 YP_001233218.1 CDS Acry_0070 NC_009484.1 75755 76138 D hypothetical protein 75755..76138 Acidiphilium cryptum JF-5 5162395 YP_001233219.1 CDS Acry_0071 NC_009484.1 76201 78294 D PFAM: ComEC/Rec2-related protein; ComEC/Rec2-like protein 76201..78294 Acidiphilium cryptum JF-5 5162396 YP_001233220.1 CDS Acry_0072 NC_009484.1 78221 79246 R PFAM: glycosyl transferase, family 2; glycosyl transferase family protein complement(78221..79246) Acidiphilium cryptum JF-5 5161684 YP_001233221.1 CDS Acry_0073 NC_009484.1 79236 80720 R PFAM: sugar transferase; sugar transferase complement(79236..80720) Acidiphilium cryptum JF-5 5161685 YP_001233222.1 CDS Acry_0074 NC_009484.1 80774 81214 R PFAM: GtrA family protein; GtrA family protein complement(80774..81214) Acidiphilium cryptum JF-5 5161970 YP_001233223.1 CDS Acry_0075 NC_009484.1 81403 81900 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 81403..81900 Acidiphilium cryptum JF-5 5161971 YP_001233224.1 CDS Acry_0076 NC_009484.1 81966 84371 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 81966..84371 Acidiphilium cryptum JF-5 5162097 YP_001233225.1 CDS Acry_0077 NC_009484.1 84384 85178 D PFAM: molybdopterin dehydrogenase, FAD-binding; carbon-monoxide dehydrogenase 84384..85178 Acidiphilium cryptum JF-5 5162167 YP_001233226.1 CDS Acry_0078 NC_009484.1 85538 86461 D possibly involved in transport of pyrroloquinoline quinone transport; pyrroloquinoline quinone biosynthesis protein PqqB 85538..86461 Acidiphilium cryptum JF-5 5162238 YP_001233227.1 CDS Acry_0079 NC_009484.1 86458 87198 D Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 86458..87198 Acidiphilium cryptum JF-5 5162239 YP_001233228.1 CDS Acry_0080 NC_009484.1 87195 87470 D PFAM: coenzyme PQQ synthesis D; coenzyme PQQ synthesis D 87195..87470 Acidiphilium cryptum JF-5 5162246 YP_001233229.1 CDS Acry_0081 NC_009484.1 87467 88588 D TIGRFAM: coenzyme PQQ biosynthesis protein E; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; pyrroloquinoline quinone biosynthesis protein PqqE 87467..88588 Acidiphilium cryptum JF-5 5161982 YP_001233230.1 CDS Acry_0082 NC_009484.1 88570 89400 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase, substrate binding; RNA methyltransferase complement(88570..89400) Acidiphilium cryptum JF-5 5161983 YP_001233231.1 CDS Acry_0083 NC_009484.1 89808 90368 D hypothetical protein 89808..90368 Acidiphilium cryptum JF-5 5161211 YP_001233232.1 CDS Acry_0084 NC_009484.1 90445 93444 R hypothetical protein complement(90445..93444) Acidiphilium cryptum JF-5 5161892 YP_001233233.1 CDS Acry_0085 NC_009484.1 93545 94156 R PFAM: isochorismatase hydrolase; nicotinamidase complement(93545..94156) Acidiphilium cryptum JF-5 5161893 YP_001233234.1 CDS Acry_0086 NC_009484.1 94285 95037 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 94285..95037 Acidiphilium cryptum JF-5 5161927 YP_001233235.1 CDS Acry_0087 NC_009484.1 95049 96830 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 95049..96830 Acidiphilium cryptum JF-5 5162016 YP_001233236.1 CDS Acry_0088 NC_009484.1 96885 97679 R hypothetical protein complement(96885..97679) Acidiphilium cryptum JF-5 5162017 YP_001233237.1 CDS Acry_0089 NC_009484.1 97812 98225 R TIGRFAM: Cu(I)-responsive transcriptional regulator; PFAM: regulatory protein, MerR; MerR family transcriptional regulator complement(97812..98225) Acidiphilium cryptum JF-5 5161948 YP_001233238.1 CDS Acry_0090 NC_009484.1 98250 101312 R PFAM: acriflavin resistance protein; acriflavin resistance protein complement(98250..101312) Acidiphilium cryptum JF-5 5162135 YP_001233239.1 CDS Acry_0091 NC_009484.1 101322 102506 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(101322..102506) Acidiphilium cryptum JF-5 5162136 YP_001233240.1 CDS Acry_0092 NC_009484.1 102503 104176 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein complement(102503..104176) Acidiphilium cryptum JF-5 5162137 YP_001233241.1 CDS Acry_0093 NC_009484.1 104218 104907 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 104218..104907 Acidiphilium cryptum JF-5 5162221 YP_001233242.1 CDS Acry_0094 NC_009484.1 104863 105732 R PFAM: PaaX domain protein; PaaX domain protein, C-terminal domain; PaaX family transcriptional regulator complement(104863..105732) Acidiphilium cryptum JF-5 5162236 YP_001233243.1 CDS Acry_0095 NC_009484.1 105939 106820 R PFAM: transposase, IS4 family protein; transposase, IS4 family protein complement(105939..106820) Acidiphilium cryptum JF-5 5162237 YP_001233244.1 CDS Acry_0096 NC_009484.1 107093 107329 R hypothetical protein complement(107093..107329) Acidiphilium cryptum JF-5 5160639 YP_001233245.1 CDS Acry_0097 NC_009484.1 107462 108439 R PFAM: transposase, IS4 family protein; transposase, IS4 family protein complement(107462..108439) Acidiphilium cryptum JF-5 5162264 YP_001233246.1 CDS Acry_0098 NC_009484.1 108572 108994 D transposase 108572..108994 Acidiphilium cryptum JF-5 5162265 YP_001233247.1 CDS Acry_0100 NC_009484.1 109937 110284 D hypothetical protein 109937..110284 Acidiphilium cryptum JF-5 5161264 YP_001233248.1 CDS Acry_0101 NC_009484.1 110302 110688 D PFAM: transposase, IS4 family protein; transposase, IS4 family protein 110302..110688 Acidiphilium cryptum JF-5 5161821 YP_001233249.1 CDS Acry_0102 NC_009484.1 110707 111912 R PFAM: aminotransferase, class I and II; class I and II aminotransferase complement(110707..111912) Acidiphilium cryptum JF-5 5161822 YP_001233250.1 CDS Acry_0103 NC_009484.1 111944 114145 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein complement(111944..114145) Acidiphilium cryptum JF-5 5161817 YP_001233251.1 CDS Acry_0104 NC_009484.1 114138 114929 R PFAM: Tetratricopeptide TPR_2 repeat protein; hypothetical protein complement(114138..114929) Acidiphilium cryptum JF-5 5161832 YP_001233252.1 CDS Acry_0105 NC_009484.1 114995 115867 R PFAM: protein of unknown function DUF1217; hypothetical protein complement(114995..115867) Acidiphilium cryptum JF-5 5161833 YP_001233253.1 CDS Acry_0106 NC_009484.1 115953 116216 D hypothetical protein 115953..116216 Acidiphilium cryptum JF-5 5161412 YP_001233254.1 CDS Acry_0107 NC_009484.1 116241 116639 R flagellar biosynthesis regulator FlbT-like protein complement(116241..116639) Acidiphilium cryptum JF-5 5161466 YP_001233255.1 CDS Acry_0108 NC_009484.1 116711 117595 R PFAM: flagellin domain protein; flagellin domain-containing protein complement(116711..117595) Acidiphilium cryptum JF-5 5161467 YP_001233256.1 CDS Acry_0109 NC_009484.1 118749 120206 R TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; flagellar hook-associated protein FlgK complement(118749..120206) Acidiphilium cryptum JF-5 5161508 YP_001233257.1 CDS flgE NC_009484.1 120249 121526 R the hook connects flagellar basal body to the flagellar filament; flagellar hook protein FlgE complement(120249..121526) Acidiphilium cryptum JF-5 5160574 YP_001233258.1 CDS Acry_0111 NC_009484.1 121659 122114 R hypothetical protein complement(121659..122114) Acidiphilium cryptum JF-5 5161299 YP_001233259.1 CDS Acry_0112 NC_009484.1 122185 123468 D hypothetical protein 122185..123468 Acidiphilium cryptum JF-5 5161300 YP_001233260.1 CDS Acry_0113 NC_009484.1 123517 124278 D PFAM: flagellar hook capping protein; flagellar hook capping protein 123517..124278 Acidiphilium cryptum JF-5 5160762 YP_001233261.1 CDS Acry_0114 NC_009484.1 124372 125823 R hypothetical protein complement(124372..125823) Acidiphilium cryptum JF-5 5161140 YP_001233262.1 CDS Acry_0115 NC_009484.1 126107 127360 R PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(126107..127360) Acidiphilium cryptum JF-5 5161141 YP_001233263.1 CDS Acry_0116 NC_009484.1 127815 129011 D PFAM: ROK family protein; ROK family protein 127815..129011 Acidiphilium cryptum JF-5 5161069 YP_001233264.1 CDS Acry_0117 NC_009484.1 129367 130599 R PFAM: amine oxidase; amine oxidase complement(129367..130599) Acidiphilium cryptum JF-5 5161058 YP_001233265.1 CDS Acry_0118 NC_009484.1 130596 131468 R PFAM: Squalene/phytoene synthase; squalene/phytoene synthase complement(130596..131468) Acidiphilium cryptum JF-5 5161059 YP_001233266.1 CDS Acry_0119 NC_009484.1 131468 132304 R PFAM: Squalene/phytoene synthase; squalene/phytoene synthase complement(131468..132304) Acidiphilium cryptum JF-5 5160669 YP_001233267.1 CDS Acry_0120 NC_009484.1 132301 133428 R PFAM: glycosyl transferase, family 2; glycosyl transferase family protein complement(132301..133428) Acidiphilium cryptum JF-5 5159461 YP_001233268.1 CDS Acry_0121 NC_009484.1 133425 134510 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase complement(133425..134510) Acidiphilium cryptum JF-5 5159462 YP_001233269.1 CDS Acry_0122 NC_009484.1 134658 135707 D hypothetical protein 134658..135707 Acidiphilium cryptum JF-5 5160931 YP_001233270.1 CDS Acry_0123 NC_009484.1 135777 136031 D PFAM: Transglycosylase-associated protein; transglycosylase-associated protein 135777..136031 Acidiphilium cryptum JF-5 5160961 YP_001233271.1 CDS Acry_0124 NC_009484.1 136075 137256 D PFAM: acyltransferase 3; acyltransferase 3 136075..137256 Acidiphilium cryptum JF-5 5160962 YP_001233272.1 CDS Acry_0125 NC_009484.1 137216 138400 R PFAM: HemY domain protein; HemY domain-containing protein complement(137216..138400) Acidiphilium cryptum JF-5 5160505 YP_001233273.1 CDS Acry_0126 NC_009484.1 138400 139353 R hypothetical protein complement(138400..139353) Acidiphilium cryptum JF-5 5160436 YP_001233274.1 CDS Acry_0127 NC_009484.1 139350 140063 R PFAM: Uroporphyrinogen III synthase HEM4; uroporphyrinogen III synthase HEM4 complement(139350..140063) Acidiphilium cryptum JF-5 5160345 YP_001233275.1 CDS Acry_0128 NC_009484.1 140056 141057 R TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase complement(140056..141057) Acidiphilium cryptum JF-5 5160346 YP_001233276.1 CDS Acry_0129 NC_009484.1 141081 142172 D TIGRFAM: putative metalloendopeptidase, glycoprotease family; PFAM: peptidase M22, glycoprotease; metalloendopeptidase glycoprotease family 141081..142172 Acidiphilium cryptum JF-5 5159936 YP_001233277.1 CDS Acry_0130 NC_009484.1 142327 144843 D TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase, family 35; glycogen/starch/alpha-glucan phosphorylase 142327..144843 Acidiphilium cryptum JF-5 5159512 YP_001233278.1 CDS glgC NC_009484.1 144902 146173 D catalyzes the formation of ADP-glucose and diphosphate from ATP and alpha-D-glucose 1-phosphate; glucose-1-phosphate adenylyltransferase 144902..146173 Acidiphilium cryptum JF-5 5159513 YP_001233279.1 CDS Acry_0132 NC_009484.1 146176 147615 D catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose; glycogen synthase 146176..147615 Acidiphilium cryptum JF-5 5159449 YP_001233280.1 CDS Acry_0133 NC_009484.1 147623 150715 R PFAM: acriflavin resistance protein; acriflavin resistance protein complement(147623..150715) Acidiphilium cryptum JF-5 5160170 YP_001233281.1 CDS Acry_0134 NC_009484.1 150719 153916 R PFAM: acriflavin resistance protein; acriflavin resistance protein complement(150719..153916) Acidiphilium cryptum JF-5 5160171 YP_001233282.1 CDS Acry_0135 NC_009484.1 153913 155073 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(153913..155073) Acidiphilium cryptum JF-5 5160051 YP_001233283.1 CDS Acry_0136 NC_009484.1 155076 156584 R TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein complement(155076..156584) Acidiphilium cryptum JF-5 5159855 YP_001233284.1 CDS Acry_0137 NC_009484.1 156613 157167 R PFAM: Phosphoglycerate mutase; phosphoglycerate mutase complement(156613..157167) Acidiphilium cryptum JF-5 5159856 YP_001233285.1 CDS Acry_0138 NC_009484.1 157294 157959 D PFAM: import inner membrane translocase, subunit Tim44; import inner membrane translocase subunit Tim44 157294..157959 Acidiphilium cryptum JF-5 5159815 YP_001233286.1 CDS Acry_0139 NC_009484.1 157963 159165 D PFAM: MltA domain protein; 3D domain protein; MltA domain-containing protein 157963..159165 Acidiphilium cryptum JF-5 5159891 YP_001233287.1 CDS Acry_0140 NC_009484.1 159162 159953 D PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein 159162..159953 Acidiphilium cryptum JF-5 5159892 YP_001233288.1 CDS Acry_0141 NC_009484.1 159950 161842 D PFAM: K+ potassium transporter; K+ potassium transporter 159950..161842 Acidiphilium cryptum JF-5 5159877 YP_001233289.1 CDS Acry_0142 NC_009484.1 161848 162345 D hypothetical protein 161848..162345 Acidiphilium cryptum JF-5 5159919 YP_001233290.1 CDS Acry_0143 NC_009484.1 162327 162671 D hypothetical protein 162327..162671 Acidiphilium cryptum JF-5 5159582 YP_001233291.1 CDS Acry_0144 NC_009484.1 162788 165346 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 162788..165346 Acidiphilium cryptum JF-5 5159583 YP_001233292.1 CDS Acry_0145 NC_009484.1 165383 166282 D PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 165383..166282 Acidiphilium cryptum JF-5 5162559 YP_001233293.1 CDS Acry_0146 NC_009484.1 166351 167226 R PFAM: 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxybutyryl-CoA dehydrogenase complement(166351..167226) Acidiphilium cryptum JF-5 5162084 YP_001233294.1 CDS Acry_0147 NC_009484.1 167310 168245 R PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha complement(167310..168245) Acidiphilium cryptum JF-5 5162085 YP_001233295.1 CDS Acry_0148 NC_009484.1 168248 168997 R PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta complement(168248..168997) Acidiphilium cryptum JF-5 5162431 YP_001233296.1 CDS Acry_0149 NC_009484.1 169102 172176 R hypothetical protein complement(169102..172176) Acidiphilium cryptum JF-5 5159837 YP_001233297.1 CDS Acry_0150 NC_009484.1 172194 175103 D PFAM: glutamate-ammonia ligase adenylyltransferase; (glutamate--ammonia-ligase) adenylyltransferase 172194..175103 Acidiphilium cryptum JF-5 5159838 YP_001233298.1 CDS Acry_0151 NC_009484.1 175100 175573 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase 175100..175573 Acidiphilium cryptum JF-5 5161939 YP_001233299.1 CDS Acry_0152 NC_009484.1 175669 176145 D PFAM: Disulphide bond formation protein DsbB; disulfide bond formation protein DsbB 175669..176145 Acidiphilium cryptum JF-5 5162186 YP_001233300.1 CDS Acry_0153 NC_009484.1 176142 176690 D PFAM: Ubiquinone biosynthesis protein COQ7; ubiquinone biosynthesis protein COQ7 176142..176690 Acidiphilium cryptum JF-5 5162187 YP_001233301.1 CDS Acry_0154 NC_009484.1 176760 177413 D hypothetical protein 176760..177413 Acidiphilium cryptum JF-5 5160179 YP_001233302.1 CDS Acry_0155 NC_009484.1 177497 177970 D TIGRFAM: phasin family protein; phasin family protein 177497..177970 Acidiphilium cryptum JF-5 5159459 YP_001233303.1 CDS Acry_0156 NC_009484.1 177999 180185 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. The beta-hairpin of the Uvr-B subunit is inserted between the strands, where it probes for the presence of a lesion; excinuclease ABC subunit B 177999..180185 Acidiphilium cryptum JF-5 5159460 YP_001233304.1 CDS Acry_0157 NC_009484.1 180182 181009 D hypothetical protein 180182..181009 Acidiphilium cryptum JF-5 5159511 YP_001233305.1 CDS Acry_0158 NC_009484.1 181110 181787 R hypothetical protein complement(181110..181787) Acidiphilium cryptum JF-5 5159576 YP_001233306.1 CDS Acry_0159 NC_009484.1 182359 182802 D hypothetical protein 182359..182802 Acidiphilium cryptum JF-5 5159447 YP_001233307.1 CDS Acry_0160 NC_009484.1 182795 183283 D hypothetical protein 182795..183283 Acidiphilium cryptum JF-5 5159448 YP_001233308.1 CDS mtnA NC_009484.1 183407 184510 D isomerizes methylthioribose-1-phosphate into methylthioribulose-1-phosphate; involved in methionine salvage pathway; methylthioribose-1-phosphate isomerase 183407..184510 Acidiphilium cryptum JF-5 5159561 YP_001233309.1 CDS Acry_0162 NC_009484.1 184507 185319 D hypothetical protein 184507..185319 Acidiphilium cryptum JF-5 5159806 YP_001233310.1 CDS Acry_0163 NC_009484.1 185334 186668 D PFAM: AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; recombination factor protein RarA 185334..186668 Acidiphilium cryptum JF-5 5159807 YP_001233311.1 CDS Acry_0164 NC_009484.1 186665 187639 D TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase 186665..187639 Acidiphilium cryptum JF-5 5160372 YP_001233312.1 CDS Acry_0165 NC_009484.1 187697 189640 D PFAM: surface antigen (D15); surface antigen variable number repeat protein; surface antigen (D15) 187697..189640 Acidiphilium cryptum JF-5 5160911 YP_001233313.1 CDS Acry_0166 NC_009484.1 189640 193599 D PFAM: protein of unknown function DUF490; hypothetical protein 189640..193599 Acidiphilium cryptum JF-5 5160912 YP_001233314.1 CDS Acry_0167 NC_009484.1 193712 194989 R PFAM: enolase; phosphopyruvate hydratase complement(193712..194989) Acidiphilium cryptum JF-5 5161216 YP_001233315.1 CDS Acry_0168 NC_009484.1 195047 195508 R PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP complement(195047..195508) Acidiphilium cryptum JF-5 5161237 YP_001233316.1 CDS Acry_0169 NC_009484.1 195512 197038 R hypothetical protein complement(195512..197038) Acidiphilium cryptum JF-5 5161238 YP_001233317.1 CDS Acry_0170 NC_009484.1 197148 197636 D PFAM: NADH:ubiquinone oxidoreductase 17.2 kD subunit; NADH:ubiquinone oxidoreductase subunit 197148..197636 Acidiphilium cryptum JF-5 5161223 YP_001233318.1 CDS Acry_0171 NC_009484.1 197674 198174 D PFAM: Mammalian cell entry related domain protein; hypothetical protein 197674..198174 Acidiphilium cryptum JF-5 5161143 YP_001233319.1 CDS Acry_0172 NC_009484.1 198171 198752 D hypothetical protein 198171..198752 Acidiphilium cryptum JF-5 5161144 YP_001233320.1 CDS Acry_0173 NC_009484.1 198903 199997 D PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 198903..199997 Acidiphilium cryptum JF-5 5161460 YP_001233321.1 CDS Acry_0174 NC_009484.1 200253 201338 D PFAM: surface antigen msp4 family protein; OmpA/MotB domain protein; OmpA/MotB domain-containing protein 200253..201338 Acidiphilium cryptum JF-5 5161755 YP_001233322.1 CDS Acry_0175 NC_009484.1 201391 202158 R protein tyrosine/serine phosphatase complement(201391..202158) Acidiphilium cryptum JF-5 5161869 YP_001233323.1 CDS Acry_0176 NC_009484.1 202166 202660 R hypothetical protein complement(202166..202660) Acidiphilium cryptum JF-5 5161870 YP_001233324.1 CDS Acry_0177 NC_009484.1 202767 203078 R PFAM: Ethyl tert-butyl ether degradation EthD; ethyl tert-butyl ether degradation EthD complement(202767..203078) Acidiphilium cryptum JF-5 5162483 YP_001233325.1 CDS Acry_0178 NC_009484.1 203141 204565 R PFAM: pyruvate kinase; pyruvate kinase complement(203141..204565) Acidiphilium cryptum JF-5 5162168 YP_001233326.1 CDS Acry_0179 NC_009484.1 204710 205024 D PFAM: protein of unknown function DUF1244; hypothetical protein 204710..205024 Acidiphilium cryptum JF-5 5162169 YP_001233327.1 CDS Acry_0180 NC_009484.1 205082 205357 D hypothetical protein 205082..205357 Acidiphilium cryptum JF-5 5162098 YP_001233328.1 CDS Acry_0181 NC_009484.1 205407 206402 R catalyzes the formation of porphobilinogen from 5-aminolevulinate; delta-aminolevulinic acid dehydratase complement(205407..206402) Acidiphilium cryptum JF-5 5162161 YP_001233329.1 CDS Acry_0182 NC_009484.1 206484 207557 R TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase complement(206484..207557) Acidiphilium cryptum JF-5 5162162 YP_001233330.1 CDS Acry_0183 NC_009484.1 207590 209005 D hypothetical protein 207590..209005 Acidiphilium cryptum JF-5 5162368 YP_001233331.1 CDS Acry_0184 NC_009484.1 209070 209957 D PFAM: CHAD domain containing protein; CHAD domain-containing protein 209070..209957 Acidiphilium cryptum JF-5 5160858 YP_001233332.1 CDS Acry_0185 NC_009484.1 210057 212342 D TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: ribonucleotide reductase large subunit; Ribonucleotide reductase large subunit, N terminal domain protein; ribonucleoside-diphosphate reductase 210057..212342 Acidiphilium cryptum JF-5 5160859 YP_001233333.1 CDS Acry_0186 NC_009484.1 212360 213367 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; alanine racemase complement(212360..213367) Acidiphilium cryptum JF-5 5160003 YP_001233334.1 CDS Acry_0187 NC_009484.1 213562 216075 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: phosphocarrier HPr protein; PEP-utilizing enzyme; phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; phosphoenolpyruvate-protein phosphotransferase 213562..216075 Acidiphilium cryptum JF-5 5160194 YP_001233335.1 CDS Acry_0188 NC_009484.1 216072 217025 D PFAM: PfkB domain protein; 1-phosphofructokinase 216072..217025 Acidiphilium cryptum JF-5 5160195 YP_001233336.1 CDS Acry_0189 NC_009484.1 217022 218716 D TIGRFAM: PTS system, fructose-specific, IIB subunnit; PTS system, fructose subfamily, IIC subunit; PFAM: phosphotransferase system, EIIC; phosphotransferase system PTS, fructose-specific IIB subunit; PTS system fructose subfamily transporter subunit IIC 217022..218716 Acidiphilium cryptum JF-5 5159488 YP_001233337.1 CDS Acry_0190 NC_009484.1 218787 219227 D PFAM: thioesterase superfamily protein; thioesterase superfamily protein 218787..219227 Acidiphilium cryptum JF-5 5160908 YP_001233338.1 CDS Acry_0191 NC_009484.1 219239 220156 D TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase 219239..220156 Acidiphilium cryptum JF-5 5160756 YP_001233339.1 CDS Acry_0192 NC_009484.1 220129 220764 R hypothetical protein complement(220129..220764) Acidiphilium cryptum JF-5 5160757 YP_001233340.1 CDS Acry_0193 NC_009484.1 220749 222866 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; pyridine nucleotide-disulfide oxidoreductase dimerisation region complement(220749..222866) Acidiphilium cryptum JF-5 5161194 YP_001233341.1 CDS Acry_0194 NC_009484.1 222874 224613 R PFAM: metallophosphoesterase; Radical SAM domain protein; radical SAM domain-containing protein complement(222874..224613) Acidiphilium cryptum JF-5 5161012 YP_001233342.1 CDS Acry_0195 NC_009484.1 224624 226021 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter complement(224624..226021) Acidiphilium cryptum JF-5 5161013 YP_001233343.1 CDS Acry_0196 NC_009484.1 226341 227264 D PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthetase 226341..227264 Acidiphilium cryptum JF-5 5159767 YP_001233344.1 CDS Acry_0197 NC_009484.1 227261 228829 D PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 227261..228829 Acidiphilium cryptum JF-5 5162554 YP_001233345.1 CDS Acry_0198 NC_009484.1 228858 229571 R PFAM: Dimethylmenaquinone methyltransferase; hypothetical protein complement(228858..229571) Acidiphilium cryptum JF-5 5162555 YP_001233346.1 CDS Acry_0199 NC_009484.1 230055 230918 D PFAM: peptidase M48, Ste24p; peptidase M48, Ste24p 230055..230918 Acidiphilium cryptum JF-5 5162590 YP_001233347.1 CDS Acry_0200 NC_009484.1 231000 231530 R PFAM: heat shock protein Hsp20; heat shock protein Hsp20 complement(231000..231530) Acidiphilium cryptum JF-5 5159736 YP_001233348.1 CDS Acry_0201 NC_009484.1 231784 233073 R hypothetical protein complement(231784..233073) Acidiphilium cryptum JF-5 5159737 YP_001233349.1 CDS Acry_0202 NC_009484.1 233060 234001 R hypothetical protein complement(233060..234001) Acidiphilium cryptum JF-5 5159751 YP_001233350.1 CDS Acry_0203 NC_009484.1 234071 234883 D hypothetical protein 234071..234883 Acidiphilium cryptum JF-5 5160703 YP_001233351.1 CDS Acry_0204 NC_009484.1 235043 236467 D response regulator receiver protein 235043..236467 Acidiphilium cryptum JF-5 5160704 YP_001233352.1 CDS Acry_0205 NC_009484.1 236467 237831 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 236467..237831 Acidiphilium cryptum JF-5 5160238 YP_001233353.1 CDS Acry_0206 NC_009484.1 237828 239027 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 237828..239027 Acidiphilium cryptum JF-5 5159535 YP_001233354.1 CDS Acry_0207 NC_009484.1 239024 240832 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 239024..240832 Acidiphilium cryptum JF-5 5162071 YP_001233355.1 CDS Acry_0208 NC_009484.1 240829 241671 D hypothetical protein 240829..241671 Acidiphilium cryptum JF-5 5162072 YP_001233356.1 CDS Acry_0209 NC_009484.1 241628 242284 D PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 241628..242284 Acidiphilium cryptum JF-5 5162217 YP_001233357.1 CDS Acry_0210 NC_009484.1 242289 243650 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose 6-dehydrogenase 242289..243650 Acidiphilium cryptum JF-5 5161662 YP_001233358.1 CDS Acry_0211 NC_009484.1 243647 244348 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(243647..244348) Acidiphilium cryptum JF-5 5161663 YP_001233359.1 CDS Acry_0212 NC_009484.1 244450 247137 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(244450..247137) Acidiphilium cryptum JF-5 5161760 YP_001233360.1 CDS Acry_0213 NC_009484.1 247168 247860 D TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase; heme exporter protein CcmA 247168..247860 Acidiphilium cryptum JF-5 5161794 YP_001233361.1 CDS Acry_0214 NC_009484.1 247857 248510 D PFAM: cytochrome c-type biogenesis protein CcmB; cytochrome c-type biogenesis protein CcmB 247857..248510 Acidiphilium cryptum JF-5 5161795 YP_001233362.1 CDS Acry_0215 NC_009484.1 248503 250272 R PFAM: creatinase; peptidase M24; peptidase M24 complement(248503..250272) Acidiphilium cryptum JF-5 5161746 YP_001233363.1 CDS Acry_0216 NC_009484.1 250436 250705 D PFAM: protein of unknown function DUF1127; hypothetical protein 250436..250705 Acidiphilium cryptum JF-5 5161736 YP_001233364.1 CDS Acry_0217 NC_009484.1 250751 251668 R PFAM: methyltransferase small; ribosomal L11 methyltransferase; ribosomal L11 methyltransferase complement(250751..251668) Acidiphilium cryptum JF-5 5161737 YP_001233365.1 CDS Acry_0218 NC_009484.1 251668 253854 R PFAM: UvrD/REP helicase; UvrD/REP helicase complement(251668..253854) Acidiphilium cryptum JF-5 5161691 YP_001233366.1 CDS Acry_0219 NC_009484.1 253851 254783 R TIGRFAM: 5,10-methylenetetrahydrofolate reductase; PFAM: methylenetetrahydrofolate reductase; 5,10-methylenetetrahydrofolate reductase complement(253851..254783) Acidiphilium cryptum JF-5 5162297 YP_001233367.1 CDS Acry_0220 NC_009484.1 254938 255810 D PFAM: VacJ family lipoprotein; VacJ family lipoprotein 254938..255810 Acidiphilium cryptum JF-5 5162298 YP_001233368.1 CDS Acry_0221 NC_009484.1 255848 256474 D PFAM: toluene tolerance family protein; toluene tolerance family protein 255848..256474 Acidiphilium cryptum JF-5 5161596 YP_001233369.1 CDS Acry_0222 NC_009484.1 256531 257136 D PFAM: protein of unknown function DUF150; hypothetical protein 256531..257136 Acidiphilium cryptum JF-5 5161595 YP_001233370.1 CDS nusA NC_009484.1 257162 258682 D modifies transcription through interactions with RNA polymerase affecting elongation, readthrough, termination, and antitermination; transcription elongation factor NusA 257162..258682 Acidiphilium cryptum JF-5 5161504 YP_001233371.1 CDS Acry_0224 NC_009484.1 258675 259415 D PFAM: protein of unknown function DUF448; hypothetical protein 258675..259415 Acidiphilium cryptum JF-5 5161505 YP_001233372.1 CDS infB NC_009484.1 259432 262095 D Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits during initiation of protein synthesis. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; translation initiation factor IF-2 259432..262095 Acidiphilium cryptum JF-5 5160744 YP_001233373.1 CDS rbfA NC_009484.1 262065 262487 D associates with free 30S ribosomal subunits; essential for efficient processing of 16S rRNA; in Escherichia coli rbfA is induced by cold shock; ribosome-binding factor A 262065..262487 Acidiphilium cryptum JF-5 5161437 YP_001233374.1 CDS Acry_0227 NC_009484.1 262484 263452 D TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5 domain protein; SUA5/yciO/yrdC, N-terminal domain; Sua5/YciO/YrdC/YwlC family protein 262484..263452 Acidiphilium cryptum JF-5 5161438 YP_001233375.1 CDS Acry_0228 NC_009484.1 263478 266747 R PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase complement(263478..266747) Acidiphilium cryptum JF-5 5161373 YP_001233376.1 CDS Acry_0229 NC_009484.1 267076 268038 R TIGRFAM: methyltransferase FkbM family; FkbM family methyltransferase complement(267076..268038) Acidiphilium cryptum JF-5 5160602 YP_001233377.1 CDS Acry_0230 NC_009484.1 268531 268935 R ribose/xylose/arabinose/galactoside ABC-type transporter permease complement(268531..268935) Acidiphilium cryptum JF-5 5160603 YP_001233378.1 CDS rplU NC_009484.1 269405 269719 D PFAM: ribosomal protein L21; 50S ribosomal protein L21 269405..269719 Acidiphilium cryptum JF-5 5161265 YP_001233379.1 CDS rpmA NC_009484.1 269735 270004 D involved in the peptidyltransferase reaction during translation; 50S ribosomal protein L27 269735..270004 Acidiphilium cryptum JF-5 5161301 YP_001233380.1 CDS obgE NC_009484.1 270067 271065 D essential GTPase; exhibits high exchange rate for GTP/GDP; associates with 50S ribosomal subunit; involved in regulation of chromosomal replication; GTPase ObgE 270067..271065 Acidiphilium cryptum JF-5 5161302 YP_001233381.1 CDS Acry_0234 NC_009484.1 271062 272213 D catalyzes the formation of glutamate 5-phosphate from glutamate in proline biosynthesis; gamma-glutamyl kinase 271062..272213 Acidiphilium cryptum JF-5 5161182 YP_001233382.1 CDS Acry_0235 NC_009484.1 272229 273335 R PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel MscS complement(272229..273335) Acidiphilium cryptum JF-5 5161290 YP_001233383.1 CDS Acry_0236 NC_009484.1 273456 273971 R hypothetical protein complement(273456..273971) Acidiphilium cryptum JF-5 5161291 YP_001233384.1 CDS Acry_0237 NC_009484.1 274069 274857 R Conjugates Arg from its aminoacyl-tRNA to the N-termini of proteins containing an N-terminal aspartate or glutamate; arginyl-tRNA-protein transferase complement(274069..274857) Acidiphilium cryptum JF-5 5161215 YP_001233385.1 CDS Acry_0238 NC_009484.1 274854 275348 R PFAM: RDD domain containing protein; RDD domain-containing protein complement(274854..275348) Acidiphilium cryptum JF-5 5160923 YP_001233386.1 CDS Acry_0239 NC_009484.1 275507 276439 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-phosphate from D-ribose 5-phosphate and ATP; ribose-phosphate pyrophosphokinase 275507..276439 Acidiphilium cryptum JF-5 5160024 YP_001233387.1 CDS Acry_0240 NC_009484.1 276467 277087 D PFAM: Glutathione S-transferase, N-terminal domain; Glutathione S-transferase, C-terminal domain; glutathione S-transferase domain-containing protein 276467..277087 Acidiphilium cryptum JF-5 5160025 YP_001233388.1 CDS Acry_0241 NC_009484.1 277087 277671 D PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 277087..277671 Acidiphilium cryptum JF-5 5160742 YP_001233389.1 CDS Acry_0242 NC_009484.1 277718 278881 D PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 277718..278881 Acidiphilium cryptum JF-5 5161078 YP_001233390.1 CDS Acry_0243 NC_009484.1 278928 280097 R PFAM: Amidase; amidase complement(278928..280097) Acidiphilium cryptum JF-5 5161079 YP_001233391.1 CDS Acry_0244 NC_009484.1 280204 281154 D hypothetical protein 280204..281154 Acidiphilium cryptum JF-5 5161068 YP_001233392.1 CDS Acry_0245 NC_009484.1 281151 282005 D PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 281151..282005 Acidiphilium cryptum JF-5 5160983 YP_001233393.1 CDS Acry_0246 NC_009484.1 282357 284444 R EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G complement(282357..284444) Acidiphilium cryptum JF-5 5160984 YP_001233394.1 CDS Acry_0247 NC_009484.1 284643 284924 R hypothetical protein complement(284643..284924) Acidiphilium cryptum JF-5 5160884 YP_001233395.1 CDS Acry_0248 NC_009484.1 284993 286264 R PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Penicillin-binding protein 5 domain protein; Serine-type D-Ala-D-Ala carboxypeptidase complement(284993..286264) Acidiphilium cryptum JF-5 5160795 YP_001233396.1 CDS Acry_0249 NC_009484.1 286395 287153 D TIGRFAM: signal peptidase I; PFAM: peptidase S24, S26A and S26B; signal peptidase I 286395..287153 Acidiphilium cryptum JF-5 5160796 YP_001233397.1 CDS Acry_0250 NC_009484.1 287150 287815 D PFAM: ribonuclease III; double-stranded RNA binding domain protein; ribonuclease III 287150..287815 Acidiphilium cryptum JF-5 5160853 YP_001233398.1 CDS era NC_009484.1 287812 288699 D Era; Escherichia coli Ras-like protein; Bex; Bacillus Era-complementing segment; essential protein in Escherichia coli that is involved in many cellular processes; GTPase; binds the cell membrane through apparent C-terminal domain; mutants are arrested during the cell cycle; Streptococcus pneumoniae Era binds to RNA and Escherichia coli Era binds 16S rRNA and 30S ribosome; GTP-binding protein Era 287812..288699 Acidiphilium cryptum JF-5 5160449 YP_001233399.1 CDS Acry_0252 NC_009484.1 288738 289856 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(288738..289856) Acidiphilium cryptum JF-5 5160450 YP_001233400.1 CDS Acry_0253 NC_009484.1 289867 291078 R PFAM: acyl-CoA dehydrogenase domain protein; acyl-CoA dehydrogenase domain-containing protein complement(289867..291078) Acidiphilium cryptum JF-5 5160924 YP_001233401.1 CDS Acry_0254 NC_009484.1 291181 292884 R PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(291181..292884) Acidiphilium cryptum JF-5 5160811 YP_001233402.1 CDS Acry_0255 NC_009484.1 292881 294977 R PFAM: Enoyl-CoA hydratase/isomerase; 3-hydroxyacyl-CoA dehydrogenase domain protein; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; NAD-binding 3-hydroxyacyl-CoA dehydrogenase complement(292881..294977) Acidiphilium cryptum JF-5 5162328 YP_001233403.1 CDS Acry_0256 NC_009484.1 295076 296074 R ABC-type Fe3+ transport system periplasmic component-like protein complement(295076..296074) Acidiphilium cryptum JF-5 5162329 YP_001233404.1 CDS Acry_0257 NC_009484.1 296074 297447 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein complement(296074..297447) Acidiphilium cryptum JF-5 5160506 YP_001233405.1 CDS Acry_0258 NC_009484.1 297444 299324 R PFAM: sulfotransferase; Tetratricopeptide TPR_4; sulfotransferase complement(297444..299324) Acidiphilium cryptum JF-5 5160422 YP_001233406.1 CDS Acry_0259 NC_009484.1 299456 300412 D PFAM: Rubrerythrin; protein of unknown function DUF125, transmembrane; rubrerythrin 299456..300412 Acidiphilium cryptum JF-5 5160423 YP_001233407.1 CDS Acry_0260 NC_009484.1 300444 301400 D PFAM: 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 300444..301400 Acidiphilium cryptum JF-5 5160575 YP_001233408.1 CDS Acry_0261 NC_009484.1 301408 302073 R PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(301408..302073) Acidiphilium cryptum JF-5 5160430 YP_001233409.1 CDS Acry_0262 NC_009484.1 302070 302897 R PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; glycine cleavage T-protein complement(302070..302897) Acidiphilium cryptum JF-5 5160431 YP_001233410.1 CDS Acry_0263 NC_009484.1 302946 303842 D PFAM: glycosyl transferase, family 9; glycosyl transferase family protein 302946..303842 Acidiphilium cryptum JF-5 5160433 YP_001233411.1 CDS Acry_0264 NC_009484.1 303839 304864 D PFAM: glycosyl transferase, group 1; phosphatidylserine decarboxylase 303839..304864 Acidiphilium cryptum JF-5 5160434 YP_001233412.1 CDS Acry_0265 NC_009484.1 304864 306609 D TIGRFAM: asparagine synthase (glutamine-hydrolyzing); PFAM: glutamine amidotransferase, class-II; asparagine synthase; asparagine synthase 304864..306609 Acidiphilium cryptum JF-5 5160435 YP_001233413.1 CDS Acry_0266 NC_009484.1 306606 307934 D Catalyzes the reversible hydrolysis of the amide bond within dihydroorotate. This metabolic intermediate is required for the biosynthesis of pyrimidine nucleotides; dihydroorotase 306606..307934 Acidiphilium cryptum JF-5 5160027 YP_001233414.1 CDS Acry_0267 NC_009484.1 308584 309174 R PFAM: regulatory protein, MerR; MerR family transcriptional regulator complement(308584..309174) Acidiphilium cryptum JF-5 5161401 YP_001233415.1 CDS Acry_0268 NC_009484.1 309171 309485 R TIGRFAM: integration host factor, alpha subunit; PFAM: histone family protein DNA-binding protein; integration host factor subunit alpha complement(309171..309485) Acidiphilium cryptum JF-5 5160386 YP_001233416.1 CDS Acry_0269 NC_009484.1 309567 310529 R TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal domain protein; 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III complement(309567..310529) Acidiphilium cryptum JF-5 5160307 YP_001233417.1 CDS Acry_0270 NC_009484.1 310535 311677 R involved in acylation of glycerol-3-phosphate to form 1-acyl-glycerol-3 phosphate for use in phospholipid biosynthesis; functions with PlsY; putative glycerol-3-phosphate acyltransferase PlsX complement(310535..311677) Acidiphilium cryptum JF-5 5160327 YP_001233418.1 CDS rpmF NC_009484.1 311765 311968 R some L32 proteins have zinc finger motifs consisting of CXXC while others do not; 50S ribosomal protein L32 complement(311765..311968) Acidiphilium cryptum JF-5 5160185 YP_001233419.1 CDS Acry_0272 NC_009484.1 312113 313225 D PFAM: SmpA/OmlA domain protein; SmpA/OmlA domain-containing protein 312113..313225 Acidiphilium cryptum JF-5 5160186 YP_001233420.1 CDS Acry_0273 NC_009484.1 313230 314819 D phosphatase-like protein 313230..314819 Acidiphilium cryptum JF-5 5159781 YP_001233421.1 CDS Acry_0274 NC_009484.1 314881 316359 D TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; succinate-semialdehyde dehydrogenase 314881..316359 Acidiphilium cryptum JF-5 5160134 YP_001233422.1 CDS Acry_0275 NC_009484.1 316607 317830 D PFAM: phage integrase family protein; phage integrase family protein 316607..317830 Acidiphilium cryptum JF-5 5161435 YP_001233423.1 CDS Acry_0276 NC_009484.1 317827 318465 D hypothetical protein 317827..318465 Acidiphilium cryptum JF-5 5159727 YP_001233424.1 CDS Acry_0277 NC_009484.1 318727 319059 D TIGRFAM: DNA binding domain, excisionase family; DNA binding domain-containing protein 318727..319059 Acidiphilium cryptum JF-5 5160202 YP_001233425.1 CDS Acry_0278 NC_009484.1 319056 321113 D PFAM: phage integrase family protein; phage integrase family protein 319056..321113 Acidiphilium cryptum JF-5 5160203 YP_001233426.1 CDS Acry_0279 NC_009484.1 321100 322200 D PFAM: phage integrase family protein; phage integrase family protein 321100..322200 Acidiphilium cryptum JF-5 5159706 YP_001233427.1 CDS Acry_0280 NC_009484.1 322246 322575 D hypothetical protein 322246..322575 Acidiphilium cryptum JF-5 5159988 YP_001233428.1 CDS Acry_0281 NC_009484.1 322577 323068 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 322577..323068 Acidiphilium cryptum JF-5 5159989 YP_001233429.1 CDS Acry_0282 NC_009484.1 323464 324210 R PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein complement(323464..324210) Acidiphilium cryptum JF-5 5159667 YP_001233430.1 CDS Acry_0283 NC_009484.1 324228 325775 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(324228..325775) Acidiphilium cryptum JF-5 5159543 YP_001233431.1 CDS Acry_0284 NC_009484.1 325989 326366 D hypothetical protein 325989..326366 Acidiphilium cryptum JF-5 5159544 YP_001233432.1 CDS Acry_0285 NC_009484.1 326433 326975 D PFAM: transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 326433..326975 Acidiphilium cryptum JF-5 5159830 YP_001233433.1 CDS Acry_0286 NC_009484.1 327029 328759 R hypothetical protein complement(327029..328759) Acidiphilium cryptum JF-5 5159651 YP_001233434.1 CDS Acry_0287 NC_009484.1 329312 330535 R PFAM: transposase, mutator type; transposase, mutator type complement(329312..330535) Acidiphilium cryptum JF-5 5159792 YP_001233435.1 CDS Acry_0289 NC_009484.1 331501 332604 R PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; DegT/DnrJ/EryC1/StrS aminotransferase complement(331501..332604) Acidiphilium cryptum JF-5 5161537 YP_001233436.1 CDS Acry_0290 NC_009484.1 332627 333898 R PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase complement(332627..333898) Acidiphilium cryptum JF-5 5159766 YP_001233437.1 CDS Acry_0291 NC_009484.1 333910 334947 R PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase complement(333910..334947) Acidiphilium cryptum JF-5 5159638 YP_001233438.1 CDS Acry_0292 NC_009484.1 334944 335993 R PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase complement(334944..335993) Acidiphilium cryptum JF-5 5159639 YP_001233439.1 CDS Acry_0293 NC_009484.1 335990 336634 R carbonic anhydrase complement(335990..336634) Acidiphilium cryptum JF-5 5159640 YP_001233440.1 CDS Acry_0294 NC_009484.1 336631 337995 R TIGRFAM: methyltransferase FkbM family; FkbM family methyltransferase complement(336631..337995) Acidiphilium cryptum JF-5 5162516 YP_001233441.1 CDS Acry_0295 NC_009484.1 339218 341617 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor 339218..341617 Acidiphilium cryptum JF-5 5162517 YP_001233442.1 CDS Acry_0296 NC_009484.1 341966 342544 D TIGRFAM: TonB family protein; TonB family protein 341966..342544 Acidiphilium cryptum JF-5 5159874 YP_001233443.1 CDS Acry_0297 NC_009484.1 342711 343733 D ABC-type Fe3+ transport system periplasmic component-like protein 342711..343733 Acidiphilium cryptum JF-5 5160144 YP_001233444.1 CDS Acry_0298 NC_009484.1 343759 345315 D ABC-type Fe3+ transport system permease component-like protein 343759..345315 Acidiphilium cryptum JF-5 5160145 YP_001233445.1 CDS Acry_0299 NC_009484.1 345312 346361 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 345312..346361 Acidiphilium cryptum JF-5 5159965 YP_001233446.1 CDS Acry_0300 NC_009484.1 346362 347585 R TIGRFAM: efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(346362..347585) Acidiphilium cryptum JF-5 5159872 YP_001233447.1 CDS Acry_0301 NC_009484.1 347592 349955 R PFAM: protein of unknown function DUF214; hypothetical protein complement(347592..349955) Acidiphilium cryptum JF-5 5159873 YP_001233448.1 CDS Acry_0302 NC_009484.1 349962 350714 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(349962..350714) Acidiphilium cryptum JF-5 5160721 YP_001233449.1 CDS Acry_0303 NC_009484.1 350817 351140 R PFAM: protein of unknown function DUF190; hypothetical protein complement(350817..351140) Acidiphilium cryptum JF-5 5159760 YP_001233450.1 CDS Acry_0304 NC_009484.1 351142 351723 R TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; CrcB protein complement(351142..351723) Acidiphilium cryptum JF-5 5161844 YP_001233451.1 CDS Acry_0305 NC_009484.1 351774 353018 R PFAM: Arsenical pump membrane protein; Citrate transporter; citrate transporter complement(351774..353018) Acidiphilium cryptum JF-5 5161845 YP_001233452.1 CDS Acry_0306 NC_009484.1 353179 355302 R PFAM: ABC transporter related; protein of unknown function DUF214; SMART: AAA ATPase; ABC transporter-like protein complement(353179..355302) Acidiphilium cryptum JF-5 5162573 YP_001233453.1 CDS Acry_0307 NC_009484.1 355316 356557 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(355316..356557) Acidiphilium cryptum JF-5 5159621 YP_001233454.1 CDS Acry_0308 NC_009484.1 356674 359730 R PFAM: acriflavin resistance protein; acriflavin resistance protein complement(356674..359730) Acidiphilium cryptum JF-5 5159622 YP_001233455.1 CDS Acry_0309 NC_009484.1 359727 360776 R TIGRFAM: efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit complement(359727..360776) Acidiphilium cryptum JF-5 5159722 YP_001233456.1 CDS Acry_0310 NC_009484.1 360781 362142 R PFAM: outer membrane efflux protein; outer membrane efflux protein complement(360781..362142) Acidiphilium cryptum JF-5 5159889 YP_001233457.1 CDS Acry_0311 NC_009484.1 362240 362974 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 362240..362974 Acidiphilium cryptum JF-5 5159890 YP_001233458.1 CDS Acry_0312 NC_009484.1 362971 364380 D PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 362971..364380 Acidiphilium cryptum JF-5 5160303 YP_001233459.1 CDS Acry_0313 NC_009484.1 364405 365304 R SMART: helix-turn-helix domain protein; XRE family transcriptional regulator complement(364405..365304) Acidiphilium cryptum JF-5 5160684 YP_001233460.1 CDS Acry_0314 NC_009484.1 365304 365765 R PFAM: regulatory protein, MarR; MarR family transcriptional regulator complement(365304..365765) Acidiphilium cryptum JF-5 5160685 YP_001233461.1 CDS Acry_0315 NC_009484.1 365851 367680 D PFAM: CBS domain containing protein; Cl- channel, voltage-gated family protein; hypothetical protein 365851..367680 Acidiphilium cryptum JF-5 5160680 YP_001233462.1 CDS Acry_0316 NC_009484.1 367771 368979 D catalyzes the formation of pyruvate from 2,3-diaminopropionate; diaminopropionate ammonia-lyase 367771..368979 Acidiphilium cryptum JF-5 5160985 YP_001233463.1 CDS Acry_0317 NC_009484.1 368973 369968 R ABC-type sugar transport system periplasmic component-like protein complement(368973..369968) Acidiphilium cryptum JF-5 5160986 YP_001233464.1 CDS Acry_0318 NC_009484.1 370018 371052 R PFAM: inner-membrane translocator; inner-membrane translocator complement(370018..371052) Acidiphilium cryptum JF-5 5162390 YP_001233465.1 CDS Acry_0319 NC_009484.1 371049 371897 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(371049..371897) Acidiphilium cryptum JF-5 5161519 YP_001233466.1 CDS Acry_0320 NC_009484.1 372078 372518 D PFAM: protein of unknown function DUF861, cupin_3; Cupin 2, conserved barrel domain protein; cupin 372078..372518 Acidiphilium cryptum JF-5 5161819 YP_001233467.1 CDS Acry_0321 NC_009484.1 372526 373770 D PFAM: monooxygenase, FAD-binding; hypothetical protein 372526..373770 Acidiphilium cryptum JF-5 5161820 YP_001233468.1 CDS Acry_0322 NC_009484.1 373767 374582 D hypothetical protein 373767..374582 Acidiphilium cryptum JF-5 5162310 YP_001233469.1 CDS Acry_0323 NC_009484.1 374670 375437 D Required in the synthesis of PPQ, but its exact function is unknown; pyrroloquinoline quinone biosynthesis protein PqqC 374670..375437 Acidiphilium cryptum JF-5 5162055 YP_001233470.1 CDS Acry_0324 NC_009484.1 375504 376133 D PFAM: NUDIX hydrolase; NUDIX hydrolase 375504..376133 Acidiphilium cryptum JF-5 5162056 YP_001233471.1 CDS Acry_0325 NC_009484.1 376130 376969 D TIGRFAM: phenazine biosynthesis protein PhzF family; PFAM: Phenazine biosynthesis PhzC/PhzF protein; PhzF family phenazine biosynthesis protein 376130..376969 Acidiphilium cryptum JF-5 5161993 YP_001233472.1 CDS Acry_0326 NC_009484.1 377157 377384 D TIGRFAM: hydrogenase assembly chaperone hypC/hupF; PFAM: hydrogenase expression/formation protein (HUPF/HYPC); hydrogenase assembly chaperone HypC/HupF 377157..377384 Acidiphilium cryptum JF-5 5161998 YP_001233473.1 CDS Acry_0327 NC_009484.1 377398 378492 D PFAM: hydrogenase formation HypD protein; hydrogenase formation HypD protein 377398..378492 Acidiphilium cryptum JF-5 5161999 YP_001233474.1 CDS Acry_0328 NC_009484.1 378503 380767 D TIGRFAM: [NiFe] hydrogenase maturation protein HypF; PFAM: acylphosphatase; SUA5/yciO/yrdC, N-terminal domain; zinc finger, HypF domain protein; (NiFe) hydrogenase maturation protein HypF 378503..380767 Acidiphilium cryptum JF-5 5159741 YP_001233475.1 CDS Acry_0329 NC_009484.1 380764 381780 D TIGRFAM: hydrogenase expression/formation protein HypE; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; hydrogenase expression/formation protein HypE 380764..381780 Acidiphilium cryptum JF-5 5159633 YP_001233476.1 CDS Acry_0330 NC_009484.1 381787 382671 R TIGRFAM: hydrogenase accessory protein HypB; PFAM: cobalamin synthesis protein, P47K; hydrogenase nickel incorporation protein HypB complement(381787..382671) Acidiphilium cryptum JF-5 5159634 YP_001233477.1 CDS Acry_0331 NC_009484.1 382671 383012 R TIGRFAM: hydrogenase nickel insertion protein HypA; PFAM: hydrogenase expression/synthesis, HypA; hydrogenase nickel incorporation protein HypA complement(382671..383012) Acidiphilium cryptum JF-5 5161924 YP_001233478.1 CDS Acry_0332 NC_009484.1 383005 383202 R PFAM: Rubredoxin-type Fe(Cys)4 protein; rubredoxin-type Fe(Cys)4 protein complement(383005..383202) Acidiphilium cryptum JF-5 5161625 YP_001233479.1 CDS Acry_0333 NC_009484.1 383199 384029 R PFAM: HupH hydrogenase expression protein; HupH hydrogenase expression protein complement(383199..384029) Acidiphilium cryptum JF-5 5161626 YP_001233480.1 CDS Acry_0334 NC_009484.1 384032 384430 R PFAM: hydrogenase-1 expression HyaE; hydrogenase-1 expression HyaE complement(384032..384430) Acidiphilium cryptum JF-5 5160900 YP_001233481.1 CDS Acry_0335 NC_009484.1 384430 385005 R TIGRFAM: hydrogenase maturation protease; hydrogenase expression/formation protein; PFAM: peptidase M52, hydrogen uptake protein; hydrogenase expression/formation protein complement(384430..385005) Acidiphilium cryptum JF-5 5160531 YP_001233482.1 CDS Acry_0336 NC_009484.1 385002 385736 R TIGRFAM: Ni/Fe-hydrogenase, b-type cytochrome subunit; PFAM: cytochrome B561; Ni/Fe-hydrogenase, b-type cytochrome subunit complement(385002..385736) Acidiphilium cryptum JF-5 5159804 YP_001233483.1 CDS Acry_0337 NC_009484.1 385770 387566 R PFAM: nickel-dependent hydrogenase, large subunit; nickel-dependent hydrogenase, large subunit complement(385770..387566) Acidiphilium cryptum JF-5 5159805 YP_001233484.1 CDS Acry_0338 NC_009484.1 387563 388684 R TIGRFAM: hydrogenase (NiFe) small subunit HydA; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; Nickel-iron dehydrogenase small subunit, N-terminal domain protein; hydrogenase (NiFe) small subunit HydA complement(387563..388684) Acidiphilium cryptum JF-5 5159654 YP_001233485.1 CDS Acry_0339 NC_009484.1 388837 389232 D PFAM: protein of unknown function DUF1486; hypothetical protein 388837..389232 Acidiphilium cryptum JF-5 5160407 YP_001233486.1 CDS Acry_0340 NC_009484.1 389242 389688 D PFAM: cyclase/dehydrase; cyclase/dehydrase 389242..389688 Acidiphilium cryptum JF-5 5160408 YP_001233487.1 CDS Acry_0341 NC_009484.1 389670 391208 R PFAM: UbiA prenyltransferase; UbiA prenyltransferase complement(389670..391208) Acidiphilium cryptum JF-5 5160354 YP_001233488.1 CDS Acry_0342 NC_009484.1 391239 391916 R PFAM: Rhodanese domain protein; rhodanese domain-containing protein complement(391239..391916) Acidiphilium cryptum JF-5 5162423 YP_001233489.1 CDS Acry_0343 NC_009484.1 391933 392970 R PFAM: Polysulphide reductase, NrfD; polysulfide reductase NrfD complement(391933..392970) Acidiphilium cryptum JF-5 5162424 YP_001233490.1 CDS Acry_0344 NC_009484.1 392998 393540 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(392998..393540) Acidiphilium cryptum JF-5 5161962 YP_001233491.1 CDS Acry_0345 NC_009484.1 393540 395735 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; nitrate reductase complement(393540..395735) Acidiphilium cryptum JF-5 5161418 YP_001233492.1 CDS Acry_0346 NC_009484.1 396026 397027 D PFAM: Rhodanese domain protein; rhodanese domain-containing protein 396026..397027 Acidiphilium cryptum JF-5 5161419 YP_001233493.1 CDS Acry_0348 NC_009484.1 397563 398132 D hypothetical protein 397563..398132 Acidiphilium cryptum JF-5 5161538 YP_001233494.1 CDS Acry_0350 NC_009484.1 398724 399719 R PFAM: high-affinity nickel-transporter; high-affinity nickel-transporter complement(398724..399719) Acidiphilium cryptum JF-5 5160798 YP_001233495.1 CDS Acry_0351 NC_009484.1 399822 400451 D hypothetical protein 399822..400451 Acidiphilium cryptum JF-5 5161697 YP_001233496.1 CDS Acry_0352 NC_009484.1 400570 401250 R hypothetical protein complement(400570..401250) Acidiphilium cryptum JF-5 5161787 YP_001233497.1 CDS Acry_0353 NC_009484.1 401247 402245 R PFAM: Hsp33 protein; Hsp33 protein complement(401247..402245) Acidiphilium cryptum JF-5 5161722 YP_001233498.1 CDS Acry_0354 NC_009484.1 402354 403814 D TIGRFAM: cytidyltransferase-related domain; rfaE bifunctional protein; PFAM: cytidylyltransferase; PfkB domain protein; rfaE bifunctional protein 402354..403814 Acidiphilium cryptum JF-5 5161604 YP_001233499.1 CDS Acry_0355 NC_009484.1 403995 404867 D PFAM: protein of unknown function DUF344; hypothetical protein 403995..404867 Acidiphilium cryptum JF-5 5161605 YP_001233500.1 CDS Acry_0356 NC_009484.1 404875 405597 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(404875..405597) Acidiphilium cryptum JF-5 5162432 YP_001233501.1 CDS Acry_0357 NC_009484.1 405594 406379 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(405594..406379) Acidiphilium cryptum JF-5 5161640 YP_001233502.1 CDS Acry_0358 NC_009484.1 406376 407302 R PFAM: inner-membrane translocator; inner-membrane translocator complement(406376..407302) Acidiphilium cryptum JF-5 5161641 YP_001233503.1 CDS Acry_0359 NC_009484.1 407302 408204 R PFAM: inner-membrane translocator; inner-membrane translocator complement(407302..408204) Acidiphilium cryptum JF-5 5161620 YP_001233504.1 CDS Acry_0360 NC_009484.1 408236 409381 R PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(408236..409381) Acidiphilium cryptum JF-5 5161664 YP_001233505.1 CDS pheT NC_009484.1 410062 412545 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a tetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 2 subfamily; phenylalanyl-tRNA synthetase subunit beta complement(410062..412545) Acidiphilium cryptum JF-5 5161195 YP_001233506.1 CDS pheS NC_009484.1 412542 413666 R catalyzes a two-step reaction, first charging a phenylalanine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; forms a heterotetramer of alpha(2)beta(2); binds two magnesium ions per tetramer; type 1 subfamily; phenylalanyl-tRNA synthetase subunit alpha complement(412542..413666) Acidiphilium cryptum JF-5 5161704 YP_001233507.1 CDS Acry_0363 NC_009484.1 414505 415008 D PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 414505..415008 Acidiphilium cryptum JF-5 5161562 YP_001233508.1 CDS Acry_0364 NC_009484.1 415177 416094 D hypothetical protein 415177..416094 Acidiphilium cryptum JF-5 5161563 YP_001233509.1 CDS Acry_0365 NC_009484.1 416136 417308 D TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; tRNA(Ile)-lysidine synthetase 416136..417308 Acidiphilium cryptum JF-5 5161554 YP_001233510.1 CDS Acry_0366 NC_009484.1 417498 419423 D TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 417498..419423 Acidiphilium cryptum JF-5 5161474 YP_001233511.1 CDS Acry_0367 NC_009484.1 419546 420424 D PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; NAD-binding 6-phosphogluconate dehydrogenase 419546..420424 Acidiphilium cryptum JF-5 5161475 YP_001233512.1 CDS Acry_0368 NC_009484.1 420428 421189 R PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(420428..421189) Acidiphilium cryptum JF-5 5162384 YP_001233513.1 CDS Acry_0369 NC_009484.1 421480 423633 D PFAM: 3' exoribonuclease; RNA binding S1 domain protein; KH, type 1, domain protein; SMART: KH domain protein; polynucleotide phosphorylase/polyadenylase 421480..423633 Acidiphilium cryptum JF-5 5161454 YP_001233514.1 CDS Acry_0370 NC_009484.1 423764 424978 R PFAM: major facilitator superfamily MFS_1; major facilitator transporter complement(423764..424978) Acidiphilium cryptum JF-5 5161339 YP_001233515.1 CDS Acry_0371 NC_009484.1 425010 425651 R hypothetical protein complement(425010..425651) Acidiphilium cryptum JF-5 5161340 YP_001233516.1 CDS Acry_0372 NC_009484.1 425746 426147 D PFAM: DoxX family protein; DoxX family protein 425746..426147 Acidiphilium cryptum JF-5 5161204 YP_001233517.1 CDS rpsU NC_009484.1 426210 426413 R a small basic protein that is one of the last in the subunit assembly; omission does not prevent assembly but the subunit is inactive; binds central domain of 16S rRNA; 30S ribosomal protein S21 complement(426210..426413) Acidiphilium cryptum JF-5 5159922 YP_001233518.1 CDS Acry_0374 NC_009484.1 426557 427186 D TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 426557..427186 Acidiphilium cryptum JF-5 5159923 YP_001233519.1 CDS Acry_0375 NC_009484.1 427186 427842 D TIGRFAM: rpsU-divergently transcribed protein; PFAM: COQ9 domain protein; rpsU-divergently transcribed protein 427186..427842 Acidiphilium cryptum JF-5 5161126 YP_001233520.1 CDS Acry_0376 NC_009484.1 427811 429001 R TIGRFAM: Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family; PFAM: monooxygenase, FAD-binding; FAD dependent oxidoreductase; UbiH/UbiF/VisC/COQ6 family ubiquinone biosynthesis hydroxylase complement(427811..429001) Acidiphilium cryptum JF-5 5161020 YP_001233521.1 CDS Acry_0377 NC_009484.1 429269 430570 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; ammonium transporter 429269..430570 Acidiphilium cryptum JF-5 5161021 YP_001233522.1 CDS Acry_0378 NC_009484.1 430694 433123 D PFAM: cell divisionFtsK/SpoIIIE; cell division protein FtsK 430694..433123 Acidiphilium cryptum JF-5 5162326 YP_001233523.1 CDS Acry_0379 NC_009484.1 433104 433514 D hypothetical protein 433104..433514 Acidiphilium cryptum JF-5 5160536 YP_001233524.1 CDS Acry_0380 NC_009484.1 433567 434481 D catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 433567..434481 Acidiphilium cryptum JF-5 5160537 YP_001233525.1 CDS Acry_0381 NC_009484.1 434478 435098 D TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase 434478..435098 Acidiphilium cryptum JF-5 5160296 YP_001233526.1 CDS Acry_0382 NC_009484.1 435182 437716 D capsular polysaccharide biosynthesis protein-like protein 435182..437716 Acidiphilium cryptum JF-5 5160732 YP_001233527.1 CDS Acry_0383 NC_009484.1 437884 439887 D PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 437884..439887 Acidiphilium cryptum JF-5 5160733 YP_001233528.1 CDS Acry_0384 NC_009484.1 440129 440512 D hypothetical protein 440129..440512 Acidiphilium cryptum JF-5 5160455 YP_001233529.1 CDS Acry_0385 NC_009484.1 440686 441333 D hypothetical protein 440686..441333 Acidiphilium cryptum JF-5 5162325 YP_001233530.1 CDS Acry_0386 NC_009484.1 441407 442804 D SMART: Fucolectin tachylectin-4 pentraxin-1; fucolectin tachylectin-4 pentraxin-1 441407..442804 Acidiphilium cryptum JF-5 5162285 YP_001233531.1 CDS Acry_0387 NC_009484.1 442929 444344 R PFAM: glycosyltransferase sugar-binding region containing DXD motif; glycosyl transferase family protein complement(442929..444344) Acidiphilium cryptum JF-5 5162286 YP_001233532.1 CDS Acry_0388 NC_009484.1 444903 447623 D TIGRFAM: ribonuclease, Rne/Rng family; ribonuclease 444903..447623 Acidiphilium cryptum JF-5 5160511 YP_001233533.1 CDS Acry_0389 NC_009484.1 447741 448073 D hypothetical protein 447741..448073 Acidiphilium cryptum JF-5 5160305 YP_001233534.1 CDS Acry_0390 NC_009484.1 448095 448457 D FOG: Transposase-like protein; transposase 448095..448457 Acidiphilium cryptum JF-5 5160306 YP_001233535.1 CDS Acry_0391 NC_009484.1 448749 449999 R PFAM: TrkA-N domain protein; Ion transport protein; Ion transport 2 domain protein; voltage-gated potassium channel complement(448749..449999) Acidiphilium cryptum JF-5 5160398 YP_001233536.1 CDS Acry_0392 NC_009484.1 450087 450326 R TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; PFAM: phosphoribosylformylglycinamidine synthetase PurS; phosphoribosylformylglycinamidine synthase PurS complement(450087..450326) Acidiphilium cryptum JF-5 5159692 YP_001233537.1 CDS Acry_0393 NC_009484.1 450323 451087 R catalyzes the formation of (S)-2-(5-amino-1-(5-phospho-D-ribosyl)imidazole-4- carboxamido)succinate from 5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate and L-aspartate in purine biosynthesis; SAICAR synthase; phosphoribosylaminoimidazole-succinocarboxamide synthase complement(450323..451087) Acidiphilium cryptum JF-5 5159693 YP_001233538.1 CDS Acry_0394 NC_009484.1 451217 451738 R PFAM: H+-transporting two-sector ATPase, B/B' subunit; H+-transporting two-sector ATPase subunit B/B' complement(451217..451738) Acidiphilium cryptum JF-5 5160313 YP_001233539.1 CDS Acry_0395 NC_009484.1 451745 452314 R PFAM: H+-transporting two-sector ATPase, B/B' subunit; H+-transporting two-sector ATPase, B/B' subunit complement(451745..452314) Acidiphilium cryptum JF-5 5159887 YP_001233540.1 CDS Acry_0396 NC_009484.1 452340 452573 R PFAM: H+-transporting two-sector ATPase, C subunit; H+-transporting two-sector ATPase subunit C complement(452340..452573) Acidiphilium cryptum JF-5 5159888 YP_001233541.1 CDS Acry_0397 NC_009484.1 452646 453401 R Produces ATP from ADP in the presence of a proton gradient across the membrane. Subunit A is part of the membrane proton channel F0; F0F1 ATP synthase subunit A complement(452646..453401) Acidiphilium cryptum JF-5 5160211 YP_001233542.1 CDS Acry_0398 NC_009484.1 453511 453813 D hypothetical protein 453511..453813 Acidiphilium cryptum JF-5 5159516 YP_001233543.1 CDS Acry_0399 NC_009484.1 453817 457314 R TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; chromosome segregation protein SMC complement(453817..457314) Acidiphilium cryptum JF-5 5159517 YP_001233544.1 CDS Acry_0400 NC_009484.1 457322 457951 R protein-disulfide isomerase-like protein complement(457322..457951) Acidiphilium cryptum JF-5 5159476 YP_001233545.1 CDS Acry_0401 NC_009484.1 458153 458668 D catalyzes a salvage reaction resulting in the formation of AMP which is metabolically less costly than a de novo synthesis; adenine phosphoribosyltransferase 458153..458668 Acidiphilium cryptum JF-5 5159895 YP_001233546.1 CDS Acry_0402 NC_009484.1 458693 459766 D hypothetical protein 458693..459766 Acidiphilium cryptum JF-5 5159652 YP_001233547.1 CDS Acry_0403 NC_009484.1 459796 461196 D Sms; stabilizes the strand-invasion intermediate during the DNA repair; involved in recombination of donor DNA and plays an important role in DNA damage repair after exposure to mutagenic agents; DNA repair protein RadA 459796..461196 Acidiphilium cryptum JF-5 5159653 YP_001233548.1 CDS Acry_0404 NC_009484.1 461196 461759 D PFAM: Colicin V production protein; colicin V production protein 461196..461759 Acidiphilium cryptum JF-5 5159791 YP_001233549.1 CDS Acry_0405 NC_009484.1 461840 463321 D Catalyzes first step of the de novo purine nucleotide biosynthetic pathway; amidophosphoribosyltransferase 461840..463321 Acidiphilium cryptum JF-5 5159453 YP_001233550.1 CDS Acry_0406 NC_009484.1 463346 464023 D TIGRFAM: peptide methionine sulfoxide reductase; PFAM: Methionine sulfoxide reductase A; peptide methionine sulfoxide reductase 463346..464023 Acidiphilium cryptum JF-5 5159454 YP_001233551.1 CDS Acry_0407 NC_009484.1 464083 464340 R PFAM: protein of unknown function DUF1150; hypothetical protein complement(464083..464340) Acidiphilium cryptum JF-5 5159864 YP_001233552.1 CDS Acry_0408 NC_009484.1 464342 464845 R PFAM: heat shock protein Hsp20; heat shock protein Hsp20 complement(464342..464845) Acidiphilium cryptum JF-5 5159465 YP_001233553.1 CDS Acry_0409 NC_009484.1 464962 465528 D TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase 464962..465528 Acidiphilium cryptum JF-5 5159466 YP_001233554.1 CDS Acry_0410 NC_009484.1 465528 466433 D TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein; methionyl-tRNA formyltransferase 465528..466433 Acidiphilium cryptum JF-5 5159818 YP_001233555.1 CDS truA NC_009484.1 466430 467197 D mediates pseudouridylation (positions 38, 39, 40) at the tRNA anticodon region which contributes to the structural stability; tRNA pseudouridine synthase A 466430..467197 Acidiphilium cryptum JF-5 5160049 YP_001233556.1 CDS Acry_0412 NC_009484.1 467406 467840 D TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; translation initiation factor IF-3 467406..467840 Acidiphilium cryptum JF-5 5160050 YP_001233557.1 CDS Acry_0413 NC_009484.1 467857 468513 D hypothetical protein 467857..468513 Acidiphilium cryptum JF-5 5159863 YP_001233558.1 CDS Acry_0414 NC_009484.1 468480 469283 R TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth complement(468480..469283) Acidiphilium cryptum JF-5 5160008 YP_001233559.1 CDS Acry_0415 NC_009484.1 469280 469963 R PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetate (FAA) hydrolase complement(469280..469963) Acidiphilium cryptum JF-5 5160009 YP_001233560.1 CDS Acry_0416 NC_009484.1 469992 470786 R PFAM: peptidase C26; peptidase C26 complement(469992..470786) Acidiphilium cryptum JF-5 5159682 YP_001233561.1 CDS Acry_0417 NC_009484.1 470842 471462 R PFAM: outer membrane lipoprotein carrier protein LolA; outer membrane lipoprotein carrier protein LolA complement(470842..471462) Acidiphilium cryptum JF-5 5160028 YP_001233562.1 CDS Acry_0418 NC_009484.1 471481 471870 R PFAM: regulatory protein, MarR; MarR family transcriptional regulator complement(471481..471870) Acidiphilium cryptum JF-5 5159477 YP_001233563.1 CDS Acry_0419 NC_009484.1 472090 473325 R PFAM: peptidase M17, leucyl aminopeptidase domain protein; leucyl aminopeptidase complement(472090..473325) Acidiphilium cryptum JF-5 5159478 YP_001233564.1 CDS uvrC NC_009484.1 473917 475779 D The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision; excinuclease ABC subunit C 473917..475779 Acidiphilium cryptum JF-5 5162499 YP_001233565.1 CDS Acry_0421 NC_009484.1 475876 478092 D hypothetical protein 475876..478092 Acidiphilium cryptum JF-5 5162477 YP_001233566.1 CDS Acry_0422 NC_009484.1 478022 478957 R hypothetical protein complement(478022..478957) Acidiphilium cryptum JF-5 5162478 YP_001233567.1 CDS Acry_0423 NC_009484.1 478954 479697 R PFAM: protein of unknown function DUF152; hypothetical protein complement(478954..479697) Acidiphilium cryptum JF-5 5159588 YP_001233568.1 CDS Acry_0424 NC_009484.1 479694 480668 R PFAM: protein of unknown function DUF185; hypothetical protein complement(479694..480668) Acidiphilium cryptum JF-5 5160146 YP_001233569.1 CDS Acry_0425 NC_009484.1 480665 481495 R PFAM: prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase complement(480665..481495) Acidiphilium cryptum JF-5 5160147 YP_001233570.1 CDS Acry_0426 NC_009484.1 481492 482472 R TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; ADP-L-glycero-D-manno-heptose-6-epimerase complement(481492..482472) Acidiphilium cryptum JF-5 5162581 YP_001233571.1 CDS Acry_0427 NC_009484.1 482532 482885 D PFAM: protein of unknown function DUF526; hypothetical protein 482532..482885 Acidiphilium cryptum JF-5 5161584 YP_001233572.1 CDS Acry_0428 NC_009484.1 482861 483454 R TIGRFAM: maf protein; PFAM: Maf family protein; maf protein complement(482861..483454) Acidiphilium cryptum JF-5 5161585 YP_001233573.1 CDS Acry_0429 NC_009484.1 483455 484462 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(483455..484462) Acidiphilium cryptum JF-5 5159929 YP_001233574.1 CDS Acry_0430 NC_009484.1 484504 485229 R PFAM: protein of unknown function DUF45; hypothetical protein complement(484504..485229) Acidiphilium cryptum JF-5 5160088 YP_001233575.1 CDS Acry_0431 NC_009484.1 485238 485714 R PFAM: protein of unknown function UPF0153; hypothetical protein complement(485238..485714) Acidiphilium cryptum JF-5 5160089 YP_001233576.1 CDS Acry_0432 NC_009484.1 485753 486481 R PFAM: protein of unknown function DUF500; hypothetical protein complement(485753..486481) Acidiphilium cryptum JF-5 5159570 YP_001233577.1 CDS Acry_0433 NC_009484.1 486539 487219 R PFAM: Phosphoglycerate mutase; phosphoglycerate mutase complement(486539..487219) Acidiphilium cryptum JF-5 5159928 YP_001233578.1 CDS Acry_0434 NC_009484.1 487191 487991 R PFAM: ABC-2 type transporter; ABC-2 type transporter complement(487191..487991) Acidiphilium cryptum JF-5 5160118 YP_001233579.1 CDS Acry_0435 NC_009484.1 487988 488725 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(487988..488725) Acidiphilium cryptum JF-5 5160119 YP_001233580.1 CDS Acry_0436 NC_009484.1 488748 489401 R TIGRFAM: methionine biosynthesis protein MetW; PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; methionine biosynthesis protein MetW complement(488748..489401) Acidiphilium cryptum JF-5 5160452 YP_001233581.1 CDS metX NC_009484.1 489398 490543 R Catalyzes the conversion of acetyl-CoA and L-homoserine to CoA and O-acetyl-L-homoserine; homoserine O-acetyltransferase complement(489398..490543) Acidiphilium cryptum JF-5 5161060 YP_001233582.1 CDS Acry_0438 NC_009484.1 490649 491536 D TIGRFAM: chorismate mutase; PFAM: Chorismate mutase; chorismate mutase 490649..491536 Acidiphilium cryptum JF-5 5161061 YP_001233583.1 CDS Acry_0439 NC_009484.1 491533 492627 D catalyzes the formation of L-histidinol phosphate from imidazole-acetol phosphate and glutamate in histidine biosynthesis; histidinol-phosphate aminotransferase 491533..492627 Acidiphilium cryptum JF-5 5161303 YP_001233584.1 CDS Acry_0440 NC_009484.1 492602 493507 D PFAM: Prephenate dehydrogenase; NADP oxidoreductase, coenzyme F420-dependent; prephenate dehydrogenase 492602..493507 Acidiphilium cryptum JF-5 5161363 YP_001233585.1 CDS truB NC_009484.1 493583 494518 D catalyzes isomerization of specific uridines in RNA to pseudouridine; responsible for residues in T loops of many tRNAs; tRNA pseudouridine synthase B 493583..494518 Acidiphilium cryptum JF-5 5161364 YP_001233586.1 CDS Acry_0442 NC_009484.1 494542 494811 D PFAM: ribosomal protein S15; 30S ribosomal protein S15 494542..494811 Acidiphilium cryptum JF-5 5160645 YP_001233587.1 CDS Acry_0443 NC_009484.1 494952 495722 D PFAM: protein of unknown function UPF0005; hypothetical protein 494952..495722 Acidiphilium cryptum JF-5 5162569 YP_001233588.1 CDS Acry_0444 NC_009484.1 495815 496114 R TIGRFAM: phosphocarrier, HPr family; PFAM: phosphocarrier HPr protein; phosphotransferase system, phosphocarrier protein HPr complement(495815..496114) Acidiphilium cryptum JF-5 5162570 YP_001233589.1 CDS Acry_0445 NC_009484.1 496105 496527 R PFAM: PTS system fructose subfamily IIA component; PTS system fructose subfamily transporter subunit IIA complement(496105..496527) Acidiphilium cryptum JF-5 5162218 YP_001233590.1 CDS Acry_0446 NC_009484.1 496524 497435 R PFAM: uncharacterised P-loop ATPase protein UPF0042; hypothetical protein complement(496524..497435) Acidiphilium cryptum JF-5 5161550 YP_001233591.1 CDS Acry_0447 NC_009484.1 497432 497854 R HPr kinase complement(497432..497854) Acidiphilium cryptum JF-5 5161551 YP_001233592.1 CDS Acry_0448 NC_009484.1 498015 498281 R hypothetical protein complement(498015..498281) Acidiphilium cryptum JF-5 5161378 YP_001233593.1 CDS Acry_0449 NC_009484.1 498269 498586 R hypothetical protein complement(498269..498586) Acidiphilium cryptum JF-5 5161115 YP_001233594.1 CDS Acry_0450 NC_009484.1 498917 499600 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 498917..499600 Acidiphilium cryptum JF-5 5161042 YP_001233595.1 CDS Acry_0451 NC_009484.1 499610 501076 D PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 499610..501076 Acidiphilium cryptum JF-5 5161043 YP_001233596.1 CDS Acry_0452 NC_009484.1 501161 502564 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 501161..502564 Acidiphilium cryptum JF-5 5160956 YP_001233597.1 CDS Acry_0453 NC_009484.1 502580 505459 R TIGRFAM: outer membrane autotransporter barrel domain; PFAM: peptidase S8 and S53, subtilisin, kexin, sedolisin; Autotransporter beta- domain protein; outer membrane autotransporter complement(502580..505459) Acidiphilium cryptum JF-5 5160881 YP_001233598.1 CDS Acry_0455 NC_009484.1 506710 507366 R PFAM: protein of unknown function DUF1345; hypothetical protein complement(506710..507366) Acidiphilium cryptum JF-5 5161329 YP_001233599.1 CDS Acry_0456 NC_009484.1 507432 509075 R TIGRFAM: FGGY-family pentulose kinase; PFAM: carbohydrate kinase, FGGY; FGGY-family pentulose kinase complement(507432..509075) Acidiphilium cryptum JF-5 5160584 YP_001233600.1 CDS Acry_0457 NC_009484.1 509103 510044 R PFAM: PfkB domain protein; ribokinase-like domain-containing protein complement(509103..510044) Acidiphilium cryptum JF-5 5159828 YP_001233601.1 CDS Acry_0458 NC_009484.1 510041 510940 R PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; DeoR family transcriptional regulator complement(510041..510940) Acidiphilium cryptum JF-5 5159829 YP_001233602.1 CDS Acry_0459 NC_009484.1 511322 512632 D PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 511322..512632 Acidiphilium cryptum JF-5 5160686 YP_001233603.1 CDS Acry_0460 NC_009484.1 512705 513616 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 512705..513616 Acidiphilium cryptum JF-5 5162365 YP_001233604.1 CDS Acry_0461 NC_009484.1 513627 514448 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 513627..514448 Acidiphilium cryptum JF-5 5162366 YP_001233605.1 CDS Acry_0462 NC_009484.1 514458 515555 D PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 514458..515555 Acidiphilium cryptum JF-5 5161774 YP_001233606.1 CDS Acry_0463 NC_009484.1 515592 516365 D PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 515592..516365 Acidiphilium cryptum JF-5 5161930 YP_001233607.1 CDS Acry_0464 NC_009484.1 516373 517146 D PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 516373..517146 Acidiphilium cryptum JF-5 5161931 YP_001233608.1 CDS Acry_0465 NC_009484.1 517227 518726 D TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 517227..518726 Acidiphilium cryptum JF-5 5159714 YP_001233609.1 CDS Acry_0466 NC_009484.1 518769 520583 D catalyzes the formation of 2-dehydro-3-deoxy-6-phospho-D-gluconate from 6-phospho-D-gluconate; phosphogluconate dehydratase 518769..520583 Acidiphilium cryptum JF-5 5162036 YP_001233610.1 CDS Acry_0467 NC_009484.1 520580 521215 D TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; 2-dehydro-3-deoxyphosphogluconate aldolase 520580..521215 Acidiphilium cryptum JF-5 5161384 YP_001233611.1 CDS Acry_0468 NC_009484.1 521272 522615 D TIGRFAM: sugar transporter; PFAM: General substrate transporter; major facilitator superfamily MFS_1; sugar transporter 521272..522615 Acidiphilium cryptum JF-5 5161385 YP_001233612.1 CDS Acry_0469 NC_009484.1 522623 523897 R Na+/H+ antiporter NhaD and related arsenite permease-like protein complement(522623..523897) Acidiphilium cryptum JF-5 5161341 YP_001233613.1 CDS Acry_0470 NC_009484.1 524010 524651 D PFAM: cyclase/dehydrase; carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G 524010..524651 Acidiphilium cryptum JF-5 5160805 YP_001233614.1 CDS Acry_0471 NC_009484.1 524648 525550 D PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATPase 524648..525550 Acidiphilium cryptum JF-5 5160806 YP_001233615.1 CDS Acry_0472 NC_009484.1 525547 526758 D PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor, type A; VWA containing CoxE family protein 525547..526758 Acidiphilium cryptum JF-5 5161594 YP_001233616.1 CDS Acry_0473 NC_009484.1 526755 527087 D PFAM: protein of unknown function DUF182; hypothetical protein 526755..527087 Acidiphilium cryptum JF-5 5162314 YP_001233617.1 CDS Acry_0474 NC_009484.1 527084 527770 D xanthine and Co dehydrogenase maturation factor 527084..527770 Acidiphilium cryptum JF-5 5162315 YP_001233618.1 CDS Acry_0475 NC_009484.1 527767 529386 D MobA-like protein 527767..529386 Acidiphilium cryptum JF-5 5162530 YP_001233619.1 CDS Acry_0476 NC_009484.1 529383 530342 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 529383..530342 Acidiphilium cryptum JF-5 5160553 YP_001233620.1 CDS Acry_0477 NC_009484.1 530343 531626 R TIGRFAM: phenylacetate-CoA ligase; phenylacetate-CoA ligase complement(530343..531626) Acidiphilium cryptum JF-5 5160554 YP_001233621.1 CDS Acry_0478 NC_009484.1 531631 532092 R TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; phenylacetic acid degradation protein PaaD complement(531631..532092) Acidiphilium cryptum JF-5 5160493 YP_001233622.1 CDS Acry_0479 NC_009484.1 532266 533063 R PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; TPR repeat-containing protein complement(532266..533063) Acidiphilium cryptum JF-5 5161154 YP_001233623.1 CDS Acry_0480 NC_009484.1 533060 533413 R hypothetical protein complement(533060..533413) Acidiphilium cryptum JF-5 5161155 YP_001233624.1 CDS Acry_0481 NC_009484.1 533419 534894 R PFAM: type II and III secretion system protein; type II and III secretion system protein complement(533419..534894) Acidiphilium cryptum JF-5 5160638 YP_001233625.1 CDS Acry_0482 NC_009484.1 535148 536386 D PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor 535148..536386 Acidiphilium cryptum JF-5 5159943 YP_001233626.1 CDS Acry_0483 NC_009484.1 536464 537339 D PFAM: inner-membrane translocator; inner-membrane translocator 536464..537339 Acidiphilium cryptum JF-5 5160650 YP_001233627.1 CDS Acry_0484 NC_009484.1 537339 538259 D PFAM: inner-membrane translocator; inner-membrane translocator 537339..538259 Acidiphilium cryptum JF-5 5160651 YP_001233628.1 CDS Acry_0485 NC_009484.1 538256 539728 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 538256..539728 Acidiphilium cryptum JF-5 5160715 YP_001233629.1 CDS Acry_0486 NC_009484.1 539888 540493 D hypothetical protein 539888..540493 Acidiphilium cryptum JF-5 5160290 YP_001233630.1 CDS Acry_0487 NC_009484.1 540439 541692 R PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(540439..541692) Acidiphilium cryptum JF-5 5160291 YP_001233631.1 CDS Acry_0488 NC_009484.1 541973 542452 D hypothetical protein 541973..542452 Acidiphilium cryptum JF-5 5159567 YP_001233632.1 CDS Acry_0489 NC_009484.1 542505 543035 R hypothetical protein complement(542505..543035) Acidiphilium cryptum JF-5 5161647 YP_001233633.1 CDS Acry_0490 NC_009484.1 543623 545851 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; CHASE4 domain protein; diguanylate cyclase/phosphodiesterase 543623..545851 Acidiphilium cryptum JF-5 5161648 YP_001233634.1 CDS Acry_0491 NC_009484.1 546365 546796 R hypothetical protein complement(546365..546796) Acidiphilium cryptum JF-5 5160219 YP_001233635.1 CDS Acry_0492 NC_009484.1 547074 547769 R PFAM: ThiJ/PfpI domain protein; ThiJ/PfpI domain-containing protein complement(547074..547769) Acidiphilium cryptum JF-5 5160093 YP_001233636.1 CDS Acry_0493 NC_009484.1 547848 548795 D PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator 547848..548795 Acidiphilium cryptum JF-5 5160094 YP_001233637.1 CDS Acry_0494 NC_009484.1 548900 549682 R catalyzes the formation of acetoacetate from 3-hydroxybutyrate; 3-hydroxybutyrate dehydrogenase complement(548900..549682) Acidiphilium cryptum JF-5 5162459 YP_001233638.1 CDS Acry_0495 NC_009484.1 549723 550460 R converts acetoacetate to acetone and carbon dioxide; acetoacetate decarboxylase complement(549723..550460) Acidiphilium cryptum JF-5 5161666 YP_001233639.1 CDS Acry_0496 NC_009484.1 550478 551626 R PFAM: Patatin; patatin complement(550478..551626) Acidiphilium cryptum JF-5 5161667 YP_001233640.1 CDS Acry_0497 NC_009484.1 552015 553919 R PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase complement(552015..553919) Acidiphilium cryptum JF-5 5159848 YP_001233641.1 CDS Acry_0498 NC_009484.1 554127 555041 D hypothetical protein 554127..555041 Acidiphilium cryptum JF-5 5161915 YP_001233642.1 CDS Acry_0499 NC_009484.1 555343 556515 D PFAM: protein of unknown function DUF395, YeeE/YedE; hypothetical protein 555343..556515 Acidiphilium cryptum JF-5 5160895 YP_001233643.1 CDS Acry_0500 NC_009484.1 556574 557515 D PFAM: Rhodanese domain protein; rhodanese domain-containing protein 556574..557515 Acidiphilium cryptum JF-5 5160896 YP_001233644.1 CDS Acry_0501 NC_009484.1 557574 558581 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(557574..558581) Acidiphilium cryptum JF-5 5162088 YP_001233645.1 CDS Acry_0502 NC_009484.1 558708 560198 R TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; xylulokinase complement(558708..560198) Acidiphilium cryptum JF-5 5162338 YP_001233646.1 CDS Acry_0503 NC_009484.1 560555 561550 D PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 560555..561550 Acidiphilium cryptum JF-5 5162339 YP_001233647.1 CDS Acry_0504 NC_009484.1 561556 563052 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 561556..563052 Acidiphilium cryptum JF-5 5162255 YP_001233648.1 CDS Acry_0505 NC_009484.1 563078 564088 D PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 563078..564088 Acidiphilium cryptum JF-5 5161343 YP_001233649.1 CDS Acry_0506 NC_009484.1 564220 564489 D PFAM: histone family protein DNA-binding protein; histone family protein DNA-binding protein 564220..564489 Acidiphilium cryptum JF-5 5161344 YP_001233650.1 CDS Acry_0507 NC_009484.1 564596 565492 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase complement(564596..565492) Acidiphilium cryptum JF-5 5161723 YP_001233651.1 CDS Acry_0508 NC_009484.1 565706 566689 R TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase; GDP-mannose 4,6-dehydratase complement(565706..566689) Acidiphilium cryptum JF-5 5161783 YP_001233652.1 CDS Acry_0509 NC_009484.1 566768 569014 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase complement(566768..569014) Acidiphilium cryptum JF-5 5161784 YP_001233653.1 CDS Acry_0510 NC_009484.1 569007 570050 R PFAM: molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase complement(569007..570050) Acidiphilium cryptum JF-5 5162458 YP_001233654.1 CDS Acry_0511 NC_009484.1 570047 570544 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(570047..570544) Acidiphilium cryptum JF-5 5161180 YP_001233655.1 CDS Acry_0512 NC_009484.1 570685 571290 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 570685..571290 Acidiphilium cryptum JF-5 5161181 YP_001233656.1 CDS Acry_0513 NC_009484.1 571423 572100 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase 571423..572100 Acidiphilium cryptum JF-5 5162442 YP_001233657.1 CDS Acry_0514 NC_009484.1 572146 573054 D PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 572146..573054 Acidiphilium cryptum JF-5 5162235 YP_001233658.1 CDS Acry_0515 NC_009484.1 573123 573737 R TIGRFAM: rare lipoprotein A; PFAM: Rare lipoprotein A; rare lipoprotein A complement(573123..573737) Acidiphilium cryptum JF-5 5161337 YP_001233659.1 CDS Acry_0516 NC_009484.1 573903 574433 R PFAM: protein of unknown function DUF1130; hypothetical protein complement(573903..574433) Acidiphilium cryptum JF-5 5161338 YP_001233660.1 CDS Acry_0517 NC_009484.1 574618 575442 D PFAM: sulfotransferase; sulfotransferase 574618..575442 Acidiphilium cryptum JF-5 5161680 YP_001233661.1 CDS Acry_0518 NC_009484.1 575575 575970 D hypothetical protein 575575..575970 Acidiphilium cryptum JF-5 5161108 YP_001233662.1 CDS Acry_0519 NC_009484.1 576040 576570 R PFAM: flavin reductase domain protein, FMN-binding; flavin reductase domain-containing protein complement(576040..576570) Acidiphilium cryptum JF-5 5161109 YP_001233663.1 CDS Acry_0520 NC_009484.1 576780 578690 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; methyl-accepting chemotaxis sensory transducer complement(576780..578690) Acidiphilium cryptum JF-5 5160743 YP_001233664.1 CDS Acry_0521 NC_009484.1 578771 579094 D hypothetical protein 578771..579094 Acidiphilium cryptum JF-5 5160275 YP_001233665.1 CDS Acry_0522 NC_009484.1 579253 582597 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; GAF domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; SMART: PAC repeat-containing protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 579253..582597 Acidiphilium cryptum JF-5 5160276 YP_001233666.1 CDS Acry_0523 NC_009484.1 582788 583468 D hypothetical protein 582788..583468 Acidiphilium cryptum JF-5 5161473 YP_001233667.1 CDS Acry_0524 NC_009484.1 583488 584078 R hypothetical protein complement(583488..584078) Acidiphilium cryptum JF-5 5161587 YP_001233668.1 CDS Acry_0525 NC_009484.1 584260 585471 R hypothetical protein complement(584260..585471) Acidiphilium cryptum JF-5 5161588 YP_001233669.1 CDS Acry_0526 NC_009484.1 585656 588436 R SMART: helicase c2; helicase c2 complement(585656..588436) Acidiphilium cryptum JF-5 5161741 YP_001233670.1 CDS Acry_0527 NC_009484.1 588484 589119 R PFAM: Uracil-DNA glycosylase superfamily; uracil-DNA glycosylase superfamily protein complement(588484..589119) Acidiphilium cryptum JF-5 5161749 YP_001233671.1 CDS Acry_0528 NC_009484.1 589126 589698 R PFAM: protein of unknown function DUF88; hypothetical protein complement(589126..589698) Acidiphilium cryptum JF-5 5161750 YP_001233672.1 CDS Acry_0529 NC_009484.1 589890 590306 D TIGRFAM: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase; PFAM: 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase 589890..590306 Acidiphilium cryptum JF-5 5161581 YP_001233673.1 CDS Acry_0530 NC_009484.1 590409 590819 D Promotes RNA polymerase assembly. Latches the N- and C-terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits; DNA-directed RNA polymerase subunit omega 590409..590819 Acidiphilium cryptum JF-5 5162095 YP_001233674.1 CDS Acry_0531 NC_009484.1 590857 593106 D TIGRFAM: RelA/SpoT family protein; PFAM: TGS domain protein; metal-dependent phosphohydrolase, HD sub domain; RelA/SpoT domain protein; SMART: metal-dependent phosphohydrolase, HD region; (p)ppGpp synthetase I SpoT/RelA 590857..593106 Acidiphilium cryptum JF-5 5160792 YP_001233675.1 CDS Acry_0532 NC_009484.1 593152 593556 D TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; holo-acyl-carrier-protein synthase 593152..593556 Acidiphilium cryptum JF-5 5160793 YP_001233676.1 CDS Acry_0533 NC_009484.1 593561 594649 D PFAM: (Uracil-5)-methyltransferase; (uracil-5)-methyltransferase 593561..594649 Acidiphilium cryptum JF-5 5160710 YP_001233677.1 CDS Acry_0534 NC_009484.1 594890 596464 D catalyzes the formation of 2-isopropylmalate from acetyl-CoA and 2-oxoisovalerate in leucine biosynthesis; 2-isopropylmalate synthase 594890..596464 Acidiphilium cryptum JF-5 5160562 YP_001233678.1 CDS Acry_0535 NC_009484.1 596575 597471 R PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(596575..597471) Acidiphilium cryptum JF-5 5160563 YP_001233679.1 CDS Acry_0536 NC_009484.1 597678 599195 D hypothetical protein 597678..599195 Acidiphilium cryptum JF-5 5159731 YP_001233680.1 CDS Acry_0537 NC_009484.1 599010 600269 R PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase complement(599010..600269) Acidiphilium cryptum JF-5 5160534 YP_001233681.1 CDS Acry_0538 NC_009484.1 600275 601615 R PFAM: glutamine synthetase, catalytic region; glutamate--putrescine ligase complement(600275..601615) Acidiphilium cryptum JF-5 5160535 YP_001233682.1 CDS Acry_0539 NC_009484.1 601751 602827 R PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(601751..602827) Acidiphilium cryptum JF-5 5159761 YP_001233683.1 CDS Acry_0540 NC_009484.1 602900 603742 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(602900..603742) Acidiphilium cryptum JF-5 5160604 YP_001233684.1 CDS Acry_0541 NC_009484.1 603750 604682 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(603750..604682) Acidiphilium cryptum JF-5 5160605 YP_001233685.1 CDS Acry_0542 NC_009484.1 604679 605812 R TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; spermidine/putrescine ABC transporter ATPase complement(604679..605812) Acidiphilium cryptum JF-5 5159458 YP_001233686.1 CDS Acry_0543 NC_009484.1 606176 607291 D TIGRFAM: alanine dehydrogenase; PFAM: alanine dehydrogenase/PNT domain protein; alanine dehydrogenase 606176..607291 Acidiphilium cryptum JF-5 5160228 YP_001233687.1 CDS Acry_0544 NC_009484.1 607294 607905 D PFAM: helix-turn-helix domain protein; Cupin 2, conserved barrel domain protein; XRE family transcriptional regulator 607294..607905 Acidiphilium cryptum JF-5 5160229 YP_001233688.1 CDS Acry_0545 NC_009484.1 608158 609534 D PFAM: aminotransferase class-III; putative aminotransferase 608158..609534 Acidiphilium cryptum JF-5 5160568 YP_001233689.1 CDS Acry_0546 NC_009484.1 609536 610897 D PFAM: glutamine synthetase, catalytic region; glutamine synthetase 609536..610897 Acidiphilium cryptum JF-5 5162057 YP_001233690.1 CDS Acry_0547 NC_009484.1 610910 611998 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM domain-containing protein complement(610910..611998) Acidiphilium cryptum JF-5 5162058 YP_001233691.1 CDS Acry_0548 NC_009484.1 612087 613529 R TIGRFAM: mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase; PFAM: mannose-6-phosphate isomerase, type II; Nucleotidyl transferase; Cupin 2, conserved barrel domain protein; mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase complement(612087..613529) Acidiphilium cryptum JF-5 5162488 YP_001233692.1 CDS Acry_0549 NC_009484.1 613615 614403 D hypothetical protein 613615..614403 Acidiphilium cryptum JF-5 5161985 YP_001233693.1 CDS Acry_0550 NC_009484.1 614400 615323 D hypothetical protein 614400..615323 Acidiphilium cryptum JF-5 5161986 YP_001233694.1 CDS Acry_0551 NC_009484.1 615354 616049 R TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(615354..616049) Acidiphilium cryptum JF-5 5162266 YP_001233695.1 CDS lpxC NC_009484.1 616305 617255 D zinc-dependent; catalyzes the deacetylation of UDP-(3-O-acyl)-N-acetylglucosamine to UDP-3-O-(3-hydroxytetradecanoyl)-glucosamine in the second step of lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 616305..617255 Acidiphilium cryptum JF-5 5161895 YP_001233696.1 CDS Acry_0553 NC_009484.1 617296 618939 R TIGRFAM: ABC transporter, transmembrane region, type 1; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter transmembrane protein complement(617296..618939) Acidiphilium cryptum JF-5 5161896 YP_001233697.1 CDS Acry_0554 NC_009484.1 618939 620654 R TIGRFAM: ABC transporter, transmembrane region, type 1; PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter complement(618939..620654) Acidiphilium cryptum JF-5 5161323 YP_001233698.1 CDS Acry_0555 NC_009484.1 620823 621659 D TIGRFAM: pantoate--beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantoate--beta-alanine ligase 620823..621659 Acidiphilium cryptum JF-5 5161487 YP_001233699.1 CDS Acry_0556 NC_009484.1 621759 622676 D PFAM: EAL domain protein; diguanylate phosphodiesterase 621759..622676 Acidiphilium cryptum JF-5 5161488 YP_001233700.1 CDS Acry_0557 NC_009484.1 622728 623060 D hypothetical protein 622728..623060 Acidiphilium cryptum JF-5 5160365 YP_001233701.1 CDS Acry_0558 NC_009484.1 623060 623542 D hypothetical protein 623060..623542 Acidiphilium cryptum JF-5 5161274 YP_001233702.1 CDS Acry_0559 NC_009484.1 623539 625305 D PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; ABC transporter 623539..625305 Acidiphilium cryptum JF-5 5161275 YP_001233703.1 CDS Acry_0560 NC_009484.1 625321 626247 D PFAM: glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase 625321..626247 Acidiphilium cryptum JF-5 5160999 YP_001233704.1 CDS Acry_0561 NC_009484.1 627119 628165 D PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 627119..628165 Acidiphilium cryptum JF-5 5160944 YP_001233705.1 CDS Acry_0562 NC_009484.1 628162 629712 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 628162..629712 Acidiphilium cryptum JF-5 5160945 YP_001233706.1 CDS Acry_0563 NC_009484.1 629702 631261 D TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; RND efflux system outer membrane lipoprotein 629702..631261 Acidiphilium cryptum JF-5 5160569 YP_001233707.1 CDS Acry_0564 NC_009484.1 631266 632279 R PFAM: luciferase family protein; luciferase family protein complement(631266..632279) Acidiphilium cryptum JF-5 5161038 YP_001233708.1 CDS Acry_0565 NC_009484.1 632365 633594 R Converts isocitrate to alpha ketoglutarate; isocitrate dehydrogenase complement(632365..633594) Acidiphilium cryptum JF-5 5161039 YP_001233709.1 CDS pyrE NC_009484.1 633710 634438 D involved in fifth step of pyrimidine biosynthesis; converts orotidine 5'-phosphate and diphosphate to orotate and 5-phospho-alpha-D-ribose 1-diphosphate; orotate phosphoribosyltransferase 633710..634438 Acidiphilium cryptum JF-5 5160034 YP_001233710.1 CDS Acry_0567 NC_009484.1 634908 636041 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 634908..636041 Acidiphilium cryptum JF-5 5160716 YP_001233711.1 CDS Acry_0568 NC_009484.1 636115 638898 R PFAM: glycoside hydrolase, family 3 domain protein; glycoside hydrolase family 3 protein complement(636115..638898) Acidiphilium cryptum JF-5 5160545 YP_001233712.1 CDS Acry_0569 NC_009484.1 638908 641184 R PFAM: glycosyl transferase, family 2; type IV pilus assembly PilZ; cellulose synthase complement(638908..641184) Acidiphilium cryptum JF-5 5160546 YP_001233713.1 CDS Acry_0570 NC_009484.1 641181 642311 R catalyzes the hydrolysis of 1,4-beta-D-glucosidic linkages in cellulose, lichenin and cereal beta-D-glucans; endo-1,4-D-glucanase complement(641181..642311) Acidiphilium cryptum JF-5 5160353 YP_001233714.1 CDS Acry_0571 NC_009484.1 642316 643050 R hypothetical protein complement(642316..643050) Acidiphilium cryptum JF-5 5160004 YP_001233715.1 CDS Acry_0572 NC_009484.1 643047 645353 R hypothetical protein complement(643047..645353) Acidiphilium cryptum JF-5 5160005 YP_001233716.1 CDS Acry_0573 NC_009484.1 646186 646458 D hypothetical protein 646186..646458 Acidiphilium cryptum JF-5 5159801 YP_001233717.1 CDS Acry_0574 NC_009484.1 646486 647238 R PFAM: transcriptional regulator domain protein; two component transcriptional regulator complement(646486..647238) Acidiphilium cryptum JF-5 5159677 YP_001233718.1 CDS Acry_0575 NC_009484.1 647467 647802 R hypothetical protein complement(647467..647802) Acidiphilium cryptum JF-5 5159678 YP_001233719.1 CDS Acry_0576 NC_009484.1 647763 648470 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; CRP/FNR family transcriptional regulator complement(647763..648470) Acidiphilium cryptum JF-5 5159980 YP_001233720.1 CDS Acry_0577 NC_009484.1 648663 649385 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 648663..649385 Acidiphilium cryptum JF-5 5162172 YP_001233721.1 CDS Acry_0578 NC_009484.1 649401 651299 R TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC sensor hybrid histidine kinase complement(649401..651299) Acidiphilium cryptum JF-5 5162173 YP_001233722.1 CDS Acry_0579 NC_009484.1 651580 652041 D PFAM: membrane-flanked domain; membrane-flanked domain-containing protein 651580..652041 Acidiphilium cryptum JF-5 5161440 YP_001233723.1 CDS Acry_0580 NC_009484.1 652232 653053 R hypothetical protein complement(652232..653053) Acidiphilium cryptum JF-5 5160001 YP_001233724.1 CDS Acry_0581 NC_009484.1 653209 654663 D PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; hypothetical protein 653209..654663 Acidiphilium cryptum JF-5 5160002 YP_001233725.1 CDS recF NC_009484.1 654707 655846 D Required for DNA replication; binds preferentially to single-stranded, linear DNA; recombination protein F 654707..655846 Acidiphilium cryptum JF-5 5159998 YP_001233726.1 CDS Acry_0583 NC_009484.1 655896 656825 R TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase / FAD synthetase; riboflavin biosynthesis protein RibF complement(655896..656825) Acidiphilium cryptum JF-5 5159482 YP_001233727.1 CDS Acry_0584 NC_009484.1 656822 657364 R PFAM: MaoC domain protein dehydratase; dehydratase complement(656822..657364) Acidiphilium cryptum JF-5 5159483 YP_001233728.1 CDS Acry_0585 NC_009484.1 657345 658277 R PFAM: glycosyl transferase, family 2; glycosyl transferase family protein complement(657345..658277) Acidiphilium cryptum JF-5 5162446 YP_001233729.1 CDS Acry_0586 NC_009484.1 658402 659577 D hypothetical protein 658402..659577 Acidiphilium cryptum JF-5 5162034 YP_001233730.1 CDS Acry_0587 NC_009484.1 659583 661058 D PFAM: major facilitator superfamily MFS_1; major facilitator transporter 659583..661058 Acidiphilium cryptum JF-5 5162035 YP_001233731.1 CDS Acry_0588 NC_009484.1 661089 662828 D PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 661089..662828 Acidiphilium cryptum JF-5 5162598 YP_001233732.1 CDS Acry_0589 NC_009484.1 663071 663682 D hypothetical protein 663071..663682 Acidiphilium cryptum JF-5 5162574 YP_001233733.1 CDS Acry_0590 NC_009484.1 663877 665019 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 663877..665019 Acidiphilium cryptum JF-5 5162575 YP_001233734.1 CDS Acry_0591 NC_009484.1 665025 665795 D TIGRFAM: glucose-1-phosphate cytidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate cytidylyltransferase 665025..665795 Acidiphilium cryptum JF-5 5161805 YP_001233735.1 CDS Acry_0592 NC_009484.1 665792 666868 D TIGRFAM: CDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; CDP-glucose 4,6-dehydratase 665792..666868 Acidiphilium cryptum JF-5 5162557 YP_001233736.1 CDS Acry_0593 NC_009484.1 666868 667419 D TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 666868..667419 Acidiphilium cryptum JF-5 5162558 YP_001233737.1 CDS Acry_0594 NC_009484.1 667416 668639 D PFAM: Methyltransferase type 12; Methyltransferase domain protein; C-methyltransferase; C-methyltransferase 667416..668639 Acidiphilium cryptum JF-5 5161547 YP_001233738.1 CDS Acry_0595 NC_009484.1 668788 669804 D hypothetical protein 668788..669804 Acidiphilium cryptum JF-5 5162585 YP_001233739.1 CDS Acry_0596 NC_009484.1 669955 670797 D PFAM: NAD-dependent epimerase/dehydratase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase 669955..670797 Acidiphilium cryptum JF-5 5162586 YP_001233740.1 CDS Acry_0597 NC_009484.1 670924 671694 D PFAM: Cephalosporin hydroxylase; cephalosporin hydroxylase 670924..671694 Acidiphilium cryptum JF-5 5162552 YP_001233741.1 CDS Acry_0599 NC_009484.1 672876 674489 D PFAM: chemotaxis sensory transducer; SMART: histidine kinase, HAMP region domain protein; methyl-accepting chemotaxis sensory transducer 672876..674489 Acidiphilium cryptum JF-5 5161330 YP_001233742.1 CDS Acry_0600 NC_009484.1 674489 675043 D PFAM: electron transport protein SCO1/SenC; electron transport protein SCO1/SenC 674489..675043 Acidiphilium cryptum JF-5 5161452 YP_001233743.1 CDS Acry_0601 NC_009484.1 675332 676141 D hypothetical protein 675332..676141 Acidiphilium cryptum JF-5 5161463 YP_001233744.1 CDS Acry_0602 NC_009484.1 676190 677011 D hypothetical protein 676190..677011 Acidiphilium cryptum JF-5 5162256 YP_001233745.1 CDS Acry_0603 NC_009484.1 677370 678323 D formate hydrogenlyase subunit 4-like protein 677370..678323 Acidiphilium cryptum JF-5 5162257 YP_001233746.1 CDS Acry_0605 NC_009484.1 679005 680525 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH dehydrogenase (quinone) 679005..680525 Acidiphilium cryptum JF-5 5161244 YP_001233747.1 CDS Acry_0606 NC_009484.1 680528 681958 D PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; NADH-ubiquinone oxidoreductase subunit 49kDa 680528..681958 Acidiphilium cryptum JF-5 5161818 YP_001233748.1 CDS Acry_0607 NC_009484.1 681972 682766 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase, 20 kDa subunit 681972..682766 Acidiphilium cryptum JF-5 5161839 YP_001233749.1 CDS Acry_0608 NC_009484.1 682756 684732 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH/ubiquinone/plastoquinone (complex I) 682756..684732 Acidiphilium cryptum JF-5 5161840 YP_001233750.1 CDS Acry_0609 NC_009484.1 684854 685201 D PFAM: protein of unknown function DUF190; hypothetical protein 684854..685201 Acidiphilium cryptum JF-5 5161802 YP_001233751.1 CDS Acry_0610 NC_009484.1 685232 685648 D PFAM: protein of unknown function DUF190; hypothetical protein 685232..685648 Acidiphilium cryptum JF-5 5161925 YP_001233752.1 CDS Acry_0611 NC_009484.1 685864 686769 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; dTDP-4-dehydrorhamnose reductase complement(685864..686769) Acidiphilium cryptum JF-5 5161926 YP_001233753.1 CDS Acry_0612 NC_009484.1 686771 687325 R TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase complement(686771..687325) Acidiphilium cryptum JF-5 5160232 YP_001233754.1 CDS Acry_0613 NC_009484.1 687322 688203 R TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase complement(687322..688203) Acidiphilium cryptum JF-5 5160156 YP_001233755.1 CDS Acry_0614 NC_009484.1 688200 689270 R TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; dTDP-glucose 4,6-dehydratase complement(688200..689270) Acidiphilium cryptum JF-5 5160157 YP_001233756.1 CDS Acry_0615 NC_009484.1 689593 693336 R PFAM: glycosyl transferase, family 2; glycosyl transferase, group 1; group 1 glycosyl transferase complement(689593..693336) Acidiphilium cryptum JF-5 5161252 YP_001233757.1 CDS Acry_0616 NC_009484.1 693352 694995 R PFAM: Amidase; amidase complement(693352..694995) Acidiphilium cryptum JF-5 5161245 YP_001233758.1 CDS Acry_0617 NC_009484.1 695061 696251 D deoxyribodipyrimidine photolyase-like protein 695061..696251 Acidiphilium cryptum JF-5 5161246 YP_001233759.1 CDS Acry_0618 NC_009484.1 696259 697035 R PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(696259..697035) Acidiphilium cryptum JF-5 5160935 YP_001233760.1 CDS Acry_0619 NC_009484.1 697154 698794 D PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 697154..698794 Acidiphilium cryptum JF-5 5161040 YP_001233761.1 CDS Acry_0620 NC_009484.1 698919 700418 D PFAM: MmgE/PrpD family protein; 2-methylcitrate dehydratase 698919..700418 Acidiphilium cryptum JF-5 5161041 YP_001233762.1 CDS Acry_0621 NC_009484.1 700438 701589 D catalyzes the synthesis of 2-methylcitrate from propionyl-CoA and oxaloacetate; also catalyzes the condensation of oxaloacetate with acetyl-CoA but with a lower specificity; methylcitrate synthase 700438..701589 Acidiphilium cryptum JF-5 5160994 YP_001233763.1 CDS Acry_0622 NC_009484.1 701600 702514 D TIGRFAM: methylisocitrate lyase; methylisocitrate lyase 701600..702514 Acidiphilium cryptum JF-5 5160041 YP_001233764.1 CDS Acry_0623 NC_009484.1 702542 703717 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 702542..703717 Acidiphilium cryptum JF-5 5160042 YP_001233765.1 CDS Acry_0624 NC_009484.1 703714 704811 D PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 703714..704811 Acidiphilium cryptum JF-5 5160750 YP_001233766.1 CDS Acry_0625 NC_009484.1 704887 705786 D TIGRFAM: 3-hydroxyisobutyrate dehydrogenase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 704887..705786 Acidiphilium cryptum JF-5 5162333 YP_001233767.1 CDS Acry_0626 NC_009484.1 705828 707549 D PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 705828..707549 Acidiphilium cryptum JF-5 5162334 YP_001233768.1 CDS Acry_0627 NC_009484.1 707585 708352 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 707585..708352 Acidiphilium cryptum JF-5 5160530 YP_001233769.1 CDS Acry_0628 NC_009484.1 708635 710383 R TIGRFAM: DNA mismatch repair protein MutL; PFAM: ATP-binding region, ATPase domain protein; DNA mismatch repair protein, C-terminal domain protein; DNA mismatch repair protein MutL complement(708635..710383) Acidiphilium cryptum JF-5 5161536 YP_001233770.1 CDS Acry_0629 NC_009484.1 710443 711351 D PFAM: Alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 710443..711351 Acidiphilium cryptum JF-5 5160139 YP_001233771.1 CDS Acry_0630 NC_009484.1 711311 712540 R PFAM: major facilitator superfamily MFS_1; major facilitator transporter complement(711311..712540) Acidiphilium cryptum JF-5 5160640 YP_001233772.1 CDS Acry_0631 NC_009484.1 712632 713201 R hypothetical protein complement(712632..713201) Acidiphilium cryptum JF-5 5159777 YP_001233773.1 CDS Acry_0632 NC_009484.1 713198 713731 R lipoprotein signal peptidase; integral membrane protein that removes signal peptides from prolipoproteins during lipoprotein biosynthesis; lipoprotein signal peptidase complement(713198..713731) Acidiphilium cryptum JF-5 5159778 YP_001233774.1 CDS ileS NC_009484.1 713728 716556 R IleRS; catalyzes the formation of isoleucyl-tRNA(Ile) from isoleucine and tRNA(Ile); since isoleucine and other amino acids such as valine are similar, there are additional editing function in this enzyme; one is involved in hydrolysis of activated valine-AMP and the other is involved in deacylation of mischarged Val-tRNA(Ile); there are two active sites, one for aminoacylation and one for editing; class-I aminoacyl-tRNA synthetase family type 1 subfamily; some organisms carry two different copies of this enzyme; isoleucyl-tRNA synthetase complement(713728..716556) Acidiphilium cryptum JF-5 5159926 YP_001233775.1 CDS Acry_0635 NC_009484.1 717744 719003 D hypothetical protein 717744..719003 Acidiphilium cryptum JF-5 5161379 YP_001233776.1 CDS Acry_0636 NC_009484.1 719000 720313 D hypothetical protein 719000..720313 Acidiphilium cryptum JF-5 5159695 YP_001233777.1 CDS Acry_0637 NC_009484.1 720310 721593 D Ni Fe-hydrogenase III large subunit-like protein 720310..721593 Acidiphilium cryptum JF-5 5159672 YP_001233778.1 CDS Acry_0638 NC_009484.1 721586 722080 D PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase, 20 kDa subunit 721586..722080 Acidiphilium cryptum JF-5 5159899 YP_001233779.1 CDS Acry_0639 NC_009484.1 722073 722672 D PFAM: ribonuclease HII/HIII; ribonuclease H 722073..722672 Acidiphilium cryptum JF-5 5159900 YP_001233780.1 CDS Acry_0640 NC_009484.1 722692 722985 R hypothetical protein complement(722692..722985) Acidiphilium cryptum JF-5 5160573 YP_001233781.1 CDS Acry_0641 NC_009484.1 723209 724993 R hypothetical protein complement(723209..724993) Acidiphilium cryptum JF-5 5160790 YP_001233782.1 CDS Acry_0642 NC_009484.1 725177 726040 R catalyzes the formation of phenylpyruvate from prephenate in phenylalanine biosynthesis; prephenate dehydratase complement(725177..726040) Acidiphilium cryptum JF-5 5160791 YP_001233783.1 CDS Acry_0643 NC_009484.1 726037 726780 R CMP-2-keto-3-deoxyoctulosonic acid synthetase; catalyzes the formation of CMP-3-deoxy-D-manno-octulosonate from CTP and 3-deoxy-D-manno-octulosonate which is incorporated into LPS; 3-deoxy-manno-octulosonate cytidylyltransferase complement(726037..726780) Acidiphilium cryptum JF-5 5160965 YP_001233784.1 CDS Acry_0644 NC_009484.1 726873 728297 D PFAM: cytochrome c, class I; cytochrome c, class I 726873..728297 Acidiphilium cryptum JF-5 5160946 YP_001233785.1 CDS Acry_0645 NC_009484.1 728294 729064 D PFAM: inositol monophosphatase; inositol monophosphatase 728294..729064 Acidiphilium cryptum JF-5 5162571 YP_001233786.1 CDS Acry_0646 NC_009484.1 729061 729501 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 729061..729501 Acidiphilium cryptum JF-5 5162572 YP_001233787.1 CDS Acry_0647 NC_009484.1 729508 730572 R TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase; tartrate dehydrogenase complement(729508..730572) Acidiphilium cryptum JF-5 5162067 YP_001233788.1 CDS Acry_0648 NC_009484.1 730572 731981 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(730572..731981) Acidiphilium cryptum JF-5 5162049 YP_001233789.1 CDS Acry_0649 NC_009484.1 732034 732921 R PFAM: lipid A biosynthesis acyltransferase; lipid A biosynthesis acyltransferase complement(732034..732921) Acidiphilium cryptum JF-5 5162050 YP_001233790.1 CDS Acry_0650 NC_009484.1 732918 733865 R TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; tetraacyldisaccharide 4'-kinase complement(732918..733865) Acidiphilium cryptum JF-5 5162008 YP_001233791.1 CDS Acry_0651 NC_009484.1 733865 735103 R PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein; 3-deoxy-D-manno-octulosonic-acid transferase complement(733865..735103) Acidiphilium cryptum JF-5 5162023 YP_001233792.1 CDS Acry_0652 NC_009484.1 735088 735807 R PFAM: protein of unknown function DUF374; hypothetical protein complement(735088..735807) Acidiphilium cryptum JF-5 5162024 YP_001233793.1 CDS Acry_0653 NC_009484.1 735804 736748 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(735804..736748) Acidiphilium cryptum JF-5 5162209 YP_001233794.1 CDS Acry_0654 NC_009484.1 736906 737265 D hypothetical protein 736906..737265 Acidiphilium cryptum JF-5 5162280 YP_001233795.1 CDS Acry_0655 NC_009484.1 737296 737712 D hypothetical protein 737296..737712 Acidiphilium cryptum JF-5 5162281 YP_001233796.1 CDS Acry_0656 NC_009484.1 737807 738664 D in some organisms this protein is a transmembrane protein while in others it is periplasmic; involved in some organisms with other components of the MreBCD complex and with penicillin binding proteins in the periplasm or cell wall; rod shape-determining protein MreC 737807..738664 Acidiphilium cryptum JF-5 5162447 YP_001233797.1 CDS Acry_0657 NC_009484.1 738684 739211 D hypothetical protein 738684..739211 Acidiphilium cryptum JF-5 5162391 YP_001233798.1 CDS Acry_0658 NC_009484.1 739180 741099 D PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase 739180..741099 Acidiphilium cryptum JF-5 5162392 YP_001233799.1 CDS Acry_0659 NC_009484.1 741096 742256 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; rod shape-determining protein RodA 741096..742256 Acidiphilium cryptum JF-5 5162428 YP_001233800.1 CDS Acry_0660 NC_009484.1 742463 743692 D flavohemoprotein; catalyzes the formation of nitrate from nitric oxide; can also catalyze the reduction of dihydropteridine; nitric oxide dioxygenase 742463..743692 Acidiphilium cryptum JF-5 5159958 YP_001233801.1 CDS Acry_0661 NC_009484.1 743787 744755 D hypothetical protein 743787..744755 Acidiphilium cryptum JF-5 5159959 YP_001233802.1 CDS Acry_0662 NC_009484.1 744766 746412 D PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 744766..746412 Acidiphilium cryptum JF-5 5160905 YP_001233803.1 CDS Acry_0663 NC_009484.1 746481 750992 D hypothetical protein 746481..750992 Acidiphilium cryptum JF-5 5161678 YP_001233804.1 CDS rpsD NC_009484.1 751161 751775 D primary rRNA binding protein; nucleates 30S assembly; involved in translational accuracy with proteins S5 and S12; interacts with protein S5; involved in autogeneously regulating ribosomal proteins by binding to pseudoknot structures in the polycistronic mRNA; interacts with transcription complex and functions similar to protein NusA in antitermination; 30S ribosomal protein S4 751161..751775 Acidiphilium cryptum JF-5 5161679 YP_001233805.1 CDS Acry_0665 NC_009484.1 752071 752883 R TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoate hydroxymethyltransferase complement(752071..752883) Acidiphilium cryptum JF-5 5161668 YP_001233806.1 CDS Acry_0666 NC_009484.1 752922 753545 R PFAM: carbonic anhydrase; carbonate dehydratase complement(752922..753545) Acidiphilium cryptum JF-5 5162316 YP_001233807.1 CDS Acry_0667 NC_009484.1 753873 754766 D SMART: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein 753873..754766 Acidiphilium cryptum JF-5 5162317 YP_001233808.1 CDS Acry_0668 NC_009484.1 754888 757854 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; cyclase/dehydrase; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; carbon monoxide dehydrogenase subunit G; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase 754888..757854 Acidiphilium cryptum JF-5 5161277 YP_001233809.1 CDS Acry_0669 NC_009484.1 757851 758669 D PFAM: molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase 757851..758669 Acidiphilium cryptum JF-5 5161393 YP_001233810.1 CDS Acry_0670 NC_009484.1 758666 759184 D PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein 758666..759184 Acidiphilium cryptum JF-5 5161394 YP_001233811.1 CDS Acry_0671 NC_009484.1 759177 760730 D PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 759177..760730 Acidiphilium cryptum JF-5 5161306 YP_001233812.1 CDS Acry_0672 NC_009484.1 760727 761524 D PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 760727..761524 Acidiphilium cryptum JF-5 5161131 YP_001233813.1 CDS Acry_0673 NC_009484.1 761649 762332 D PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 761649..762332 Acidiphilium cryptum JF-5 5161132 YP_001233814.1 CDS Acry_0674 NC_009484.1 762345 762668 D PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase 762345..762668 Acidiphilium cryptum JF-5 5160538 YP_001233815.1 CDS Acry_0675 NC_009484.1 762752 763213 D PFAM: protein of unknown function DUF1348; hypothetical protein 762752..763213 Acidiphilium cryptum JF-5 5162376 YP_001233816.1 CDS Acry_0676 NC_009484.1 763229 763804 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 763229..763804 Acidiphilium cryptum JF-5 5162377 YP_001233817.1 CDS Acry_0677 NC_009484.1 763844 764740 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 763844..764740 Acidiphilium cryptum JF-5 5159669 YP_001233818.1 CDS Acry_0678 NC_009484.1 764754 766151 R PFAM: regulatory protein GntR, HTH; aminotransferase, class I and II; GntR family transcriptional regulator complement(764754..766151) Acidiphilium cryptum JF-5 5160971 YP_001233819.1 CDS Acry_0679 NC_009484.1 766333 766848 D PFAM: protein of unknown function DUF983; hypothetical protein 766333..766848 Acidiphilium cryptum JF-5 5160972 YP_001233820.1 CDS Acry_0680 NC_009484.1 766845 767399 D hypothetical protein 766845..767399 Acidiphilium cryptum JF-5 5160681 YP_001233821.1 CDS Acry_0681 NC_009484.1 767465 768910 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; methyl-accepting chemotaxis sensory transducer 767465..768910 Acidiphilium cryptum JF-5 5160834 YP_001233822.1 CDS aat NC_009484.1 768963 769640 D leucyltransferase; phenylalanyltransferse; functions in the N-end rule pathway; transfers Leu, Phe, Met, from aminoacyl-tRNAs to N-terminal of proteins with Arg or Lys; leucyl/phenylalanyl-tRNA--protein transferase 768963..769640 Acidiphilium cryptum JF-5 5160771 YP_001233823.1 CDS Acry_0683 NC_009484.1 769821 770660 D PFAM: extracellular solute-binding protein, family 3; SMART: ionotropic glutamate receptor; extracellular solute-binding protein 769821..770660 Acidiphilium cryptum JF-5 5160772 YP_001233824.1 CDS Acry_0684 NC_009484.1 770738 771490 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 770738..771490 Acidiphilium cryptum JF-5 5160878 YP_001233825.1 CDS Acry_0685 NC_009484.1 771487 772254 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 771487..772254 Acidiphilium cryptum JF-5 5160918 YP_001233826.1 CDS Acry_0686 NC_009484.1 772259 773296 R PFAM: PfkB domain protein; ribokinase-like domain-containing protein complement(772259..773296) Acidiphilium cryptum JF-5 5160919 YP_001233827.1 CDS Acry_0687 NC_009484.1 773304 774290 R hypothetical protein complement(773304..774290) Acidiphilium cryptum JF-5 5160031 YP_001233828.1 CDS Acry_0688 NC_009484.1 774696 775199 R hypothetical protein complement(774696..775199) Acidiphilium cryptum JF-5 5160854 YP_001233829.1 CDS Acry_0689 NC_009484.1 775370 775699 D hypothetical protein 775370..775699 Acidiphilium cryptum JF-5 5160855 YP_001233830.1 CDS Acry_0690 NC_009484.1 775828 776757 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 775828..776757 Acidiphilium cryptum JF-5 5159790 YP_001233831.1 CDS Acry_0691 NC_009484.1 776809 777921 R hypothetical protein complement(776809..777921) Acidiphilium cryptum JF-5 5160608 YP_001233832.1 CDS Acry_0692 NC_009484.1 778081 778278 R hypothetical protein complement(778081..778278) Acidiphilium cryptum JF-5 5160609 YP_001233833.1 CDS Acry_0693 NC_009484.1 778414 778956 R hypothetical protein complement(778414..778956) Acidiphilium cryptum JF-5 5160127 YP_001233834.1 CDS Acry_0694 NC_009484.1 779014 779334 D hypothetical protein 779014..779334 Acidiphilium cryptum JF-5 5160636 YP_001233835.1 CDS Acry_0695 NC_009484.1 779788 780099 R PFAM: ETC complex I subunit conserved region; ETC complex I subunit region complement(779788..780099) Acidiphilium cryptum JF-5 5161380 YP_001233836.1 CDS Acry_0696 NC_009484.1 780247 780732 R PFAM: protein of unknown function DUF192; hypothetical protein complement(780247..780732) Acidiphilium cryptum JF-5 5161526 YP_001233837.1 CDS Acry_0697 NC_009484.1 780752 781825 R PFAM: histone deacetylase superfamily; histone deacetylase superfamily protein complement(780752..781825) Acidiphilium cryptum JF-5 5160068 YP_001233838.1 CDS Acry_0698 NC_009484.1 781892 783472 D TIGRFAM: peptide chain release factor 3; small GTP-binding protein; PFAM: protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; peptide chain release factor 3 781892..783472 Acidiphilium cryptum JF-5 5160069 YP_001233839.1 CDS Acry_0699 NC_009484.1 783694 784440 D recombinase B 783694..784440 Acidiphilium cryptum JF-5 5159897 YP_001233840.1 CDS Acry_0700 NC_009484.1 784498 784749 R hypothetical protein complement(784498..784749) Acidiphilium cryptum JF-5 5160242 YP_001233841.1 CDS Acry_0701 NC_009484.1 784756 785052 D hypothetical protein 784756..785052 Acidiphilium cryptum JF-5 5160243 YP_001233842.1 CDS Acry_0702 NC_009484.1 785167 785583 R hypothetical protein complement(785167..785583) Acidiphilium cryptum JF-5 5159578 YP_001233843.1 CDS Acry_0703 NC_009484.1 785696 786157 D hypothetical protein 785696..786157 Acidiphilium cryptum JF-5 5159956 YP_001233844.1 CDS Acry_0704 NC_009484.1 786201 787562 R PFAM: transposase, IS4 family protein; transposase, IS4 family protein complement(786201..787562) Acidiphilium cryptum JF-5 5159957 YP_001233845.1 CDS Acry_0705 NC_009484.1 787525 787863 R hypothetical protein complement(787525..787863) Acidiphilium cryptum JF-5 5160128 YP_001233846.1 CDS Acry_0706 NC_009484.1 788078 788884 D hypothetical protein 788078..788884 Acidiphilium cryptum JF-5 5159497 YP_001233847.1 CDS lysK NC_009484.1 788881 790440 D class I; LysRS1; catalyzes a two-step reaction, first charging a lysine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; in Methanosarcina barkeri this enzyme charges both tRNA molecules for lysine that exist in this organism (but the tRNALysUUU very poorly) and in the presence of LysRS2 can charge tRNAPyl with lysine; lysyl-tRNA synthetase 788881..790440 Acidiphilium cryptum JF-5 5159498 YP_001233848.1 CDS Acry_0708 NC_009484.1 790955 792652 D TIGRFAM: potassium-transporting ATPase, A subunit; PFAM: K+ transporting ATPase, A subunit; potassium-transporting ATPase subunit A 790955..792652 Acidiphilium cryptum JF-5 5159975 YP_001233849.1 CDS Acry_0709 NC_009484.1 792664 794700 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; K+-transporting ATPase, B subunit; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; K+-transporting ATPase subunit B 792664..794700 Acidiphilium cryptum JF-5 5159614 YP_001233850.1 CDS Acry_0710 NC_009484.1 794716 795315 D TIGRFAM: potassium-transporting ATPase, C subunit; PFAM: K+ transporting ATPase, KdpC subunit; potassium-transporting ATPase, C subunit 794716..795315 Acidiphilium cryptum JF-5 5159615 YP_001233851.1 CDS Acry_0711 NC_009484.1 795332 795832 D hypothetical protein 795332..795832 Acidiphilium cryptum JF-5 5162441 YP_001233852.1 CDS Acry_0712 NC_009484.1 795883 796176 D hypothetical protein 795883..796176 Acidiphilium cryptum JF-5 5159708 YP_001233853.1 CDS Acry_0713 NC_009484.1 796432 799035 D PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; Osmosensitive K+ channel His kinase sensor; UspA domain protein; osmosensitive K+ channel signal transduction histidine kinase 796432..799035 Acidiphilium cryptum JF-5 5159709 YP_001233854.1 CDS Acry_0714 NC_009484.1 799032 799727 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 799032..799727 Acidiphilium cryptum JF-5 5161623 YP_001233855.1 CDS Acry_0715 NC_009484.1 799712 800677 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(799712..800677) Acidiphilium cryptum JF-5 5159509 YP_001233856.1 CDS Acry_0716 NC_009484.1 800721 801470 D PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 800721..801470 Acidiphilium cryptum JF-5 5159510 YP_001233857.1 CDS Acry_0717 NC_009484.1 801500 802396 D PFAM: Transketolase domain protein; transketolase domain-containing protein 801500..802396 Acidiphilium cryptum JF-5 5159884 YP_001233858.1 CDS Acry_0718 NC_009484.1 802396 803400 D PFAM: Transketolase, central region; Transketolase domain protein; transketolase, central region 802396..803400 Acidiphilium cryptum JF-5 5159550 YP_001233859.1 CDS Acry_0719 NC_009484.1 803452 804468 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP 803452..804468 Acidiphilium cryptum JF-5 5161922 YP_001233860.1 CDS Acry_0720 NC_009484.1 804590 806431 D PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP C4-dicarboxylate transport system permease DctM 804590..806431 Acidiphilium cryptum JF-5 5161923 YP_001233861.1 CDS Acry_0721 NC_009484.1 806441 807190 R hypothetical protein complement(806441..807190) Acidiphilium cryptum JF-5 5159911 YP_001233862.1 CDS Acry_0722 NC_009484.1 807187 808362 R PFAM: major facilitator superfamily MFS_1; major facilitator transporter complement(807187..808362) Acidiphilium cryptum JF-5 5161174 YP_001233863.1 CDS Acry_0723 NC_009484.1 808362 809210 R BacA; phosphatase activity in Escherichia coli not kinase; involved in bacitracin resistance as bacitracin supposedly sequesters undecaprenyl disphosphate which reduces the pool of lipid carrier available to the cell; undecaprenyl pyrophosphate phosphatase complement(808362..809210) Acidiphilium cryptum JF-5 5161175 YP_001233864.1 CDS Acry_0724 NC_009484.1 809487 810530 D PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 809487..810530 Acidiphilium cryptum JF-5 5162531 YP_001233865.1 CDS Acry_0725 NC_009484.1 810525 810962 R PFAM: Fe-S metabolism associated SufE; Fe-S metabolism associated SufE complement(810525..810962) Acidiphilium cryptum JF-5 5162093 YP_001233866.1 CDS Acry_0726 NC_009484.1 810959 812212 R TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; RNA-binding S4 domain protein; tyrosyl-tRNA synthetase complement(810959..812212) Acidiphilium cryptum JF-5 5162094 YP_001233867.1 CDS Acry_0727 NC_009484.1 812256 813575 R hypothetical protein complement(812256..813575) Acidiphilium cryptum JF-5 5161572 YP_001233868.1 CDS anmK NC_009484.1 813596 814672 D catalyzes hydrolysis of 1,6-anhydro bond of anyhydro-N-acetylmuramic acid (anhMurNAc) and phosphorylates anhMurNAc to produce N-acetyl-muramate-6-phosphate; involved in murein recycling; anhydro-N-acetylmuramic acid kinase 813596..814672 Acidiphilium cryptum JF-5 5162195 YP_001233869.1 CDS Acry_0729 NC_009484.1 814685 817360 R catalyzes the ATP-dependent breakage of single-stranded DNA followed by passage and rejoining, maintains net negative superhelicity; DNA topoisomerase I complement(814685..817360) Acidiphilium cryptum JF-5 5162196 YP_001233870.1 CDS Acry_0730 NC_009484.1 817379 818500 R TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; DNA protecting protein DprA complement(817379..818500) Acidiphilium cryptum JF-5 5162533 YP_001233871.1 CDS Acry_0732 NC_009484.1 819072 820358 R TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; dihydroorotase, multifunctional complex type complement(819072..820358) Acidiphilium cryptum JF-5 5161500 YP_001233872.1 CDS pyrB NC_009484.1 820351 821286 R catalyzes the transfer of the carbamoyl moiety from carbamoyl phosphate to L- aspartate in pyrimidine biosynthesis; aspartate carbamoyltransferase catalytic subunit complement(820351..821286) Acidiphilium cryptum JF-5 5162211 YP_001233873.1 CDS Acry_0734 NC_009484.1 821332 822003 R PFAM: peptidase S24, S26A and S26B; putative phage repressor complement(821332..822003) Acidiphilium cryptum JF-5 5162277 YP_001233874.1 CDS Acry_0735 NC_009484.1 822257 822487 D hypothetical protein 822257..822487 Acidiphilium cryptum JF-5 5162253 YP_001233875.1 CDS Acry_0736 NC_009484.1 822568 823368 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 822568..823368 Acidiphilium cryptum JF-5 5162254 YP_001233876.1 CDS Acry_0737 NC_009484.1 823379 824602 R hypothetical protein complement(823379..824602) Acidiphilium cryptum JF-5 5162532 YP_001233877.1 CDS nrdF NC_009484.1 825168 826184 R B2 or R2 protein; type 1b enzyme; catalyzes the rate-limiting step in dNTP synthesis; converts nucleotides to deoxynucleotides; forms a homodimer and then a multimeric complex with NrdE; ribonucleotide-diphosphate reductase subunit beta complement(825168..826184) Acidiphilium cryptum JF-5 5161501 YP_001233878.1 CDS Acry_0739 NC_009484.1 826227 828113 R Catalyzes the rate-limiting step in dNTP synthesis; ribonucleotide-diphosphate reductase subunit alpha complement(826227..828113) Acidiphilium cryptum JF-5 5162551 YP_001233879.1 CDS Acry_0740 NC_009484.1 828392 829594 R PFAM: aminotransferase, class I and II; class I and II aminotransferase complement(828392..829594) Acidiphilium cryptum JF-5 5161239 YP_001233880.1 CDS Acry_0741 NC_009484.1 829992 830873 D PFAM: ABC-2 type transporter; ABC-2 type transporter 829992..830873 Acidiphilium cryptum JF-5 5159455 YP_001233881.1 CDS Acry_0742 NC_009484.1 830877 831686 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 830877..831686 Acidiphilium cryptum JF-5 5159711 YP_001233882.1 CDS Acry_0743 NC_009484.1 831744 834047 R hypothetical protein complement(831744..834047) Acidiphilium cryptum JF-5 5160328 YP_001233883.1 CDS Acry_0744 NC_009484.1 834047 835363 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; diaminopimelate decarboxylase complement(834047..835363) Acidiphilium cryptum JF-5 5160355 YP_001233884.1 CDS Acry_0745 NC_009484.1 835485 836900 R catalyzes the formation of arginine from (N-L-arginino)succinate; argininosuccinate lyase complement(835485..836900) Acidiphilium cryptum JF-5 5160356 YP_001233885.1 CDS Acry_0746 NC_009484.1 836929 837531 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 836929..837531 Acidiphilium cryptum JF-5 5162212 YP_001233886.1 CDS Acry_0747 NC_009484.1 837607 838836 D catalyzes the formation of 2-N(omega)-(L-arginino)succinate from L-citrulline and L-aspartate in arginine biosynthesis, AMP-forming; argininosuccinate synthase 837607..838836 Acidiphilium cryptum JF-5 5159463 YP_001233887.1 CDS Acry_0748 NC_009484.1 838849 839238 D TIGRFAM: TonB family protein; TonB family protein 838849..839238 Acidiphilium cryptum JF-5 5159464 YP_001233888.1 CDS Acry_0749 NC_009484.1 839313 839837 D hypothetical protein 839313..839837 Acidiphilium cryptum JF-5 5159755 YP_001233889.1 CDS engA NC_009484.1 839943 841298 R EngA; essential Neisserial GTPase; synchronizes cellular events by interacting with multiple targets with tandem G-domains; overexpression in Escherichia coli suppresses rrmJ mutation; structural analysis of the Thermotoga maritima ortholog shows different nucleotide binding affinities in the two binding domains; GTP-binding protein EngA complement(839943..841298) Acidiphilium cryptum JF-5 5161628 YP_001233890.1 CDS Acry_0751 NC_009484.1 841295 842656 R PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone complement(841295..842656) Acidiphilium cryptum JF-5 5161629 YP_001233891.1 CDS Acry_0752 NC_009484.1 842653 843396 R hypothetical protein complement(842653..843396) Acidiphilium cryptum JF-5 5162078 YP_001233892.1 CDS Acry_0753 NC_009484.1 843413 843823 D hypothetical protein 843413..843823 Acidiphilium cryptum JF-5 5162074 YP_001233893.1 CDS rpsA NC_009484.1 843981 845708 R in Escherichia coli this protein is involved in binding to the leader sequence of mRNAs and is itself bound to the 30S subunit; autoregulates expression via a C-terminal domain; in most gram negative organisms this protein is composed of 6 repeats of the S1 domain while in gram positive there are 4 repeats; the S1 nucleic acid-binding domain is found associated with other proteins; 30S ribosomal protein S1 complement(843981..845708) Acidiphilium cryptum JF-5 5162075 YP_001233894.1 CDS Acry_0755 NC_009484.1 845988 846935 D DNA uptake lipoprotein-like protein 845988..846935 Acidiphilium cryptum JF-5 5161969 YP_001233895.1 CDS Acry_0756 NC_009484.1 846955 848634 D TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; DNA repair protein RecN 846955..848634 Acidiphilium cryptum JF-5 5161426 YP_001233896.1 CDS Acry_0757 NC_009484.1 848631 850679 D TIGRFAM: DNA ligase, NAD-dependent; PFAM: BRCT domain protein; zinc-finger, NAD-dependent DNA ligase C4-type; NAD-dependent DNA ligase, OB-fold; NAD-dependent DNA ligase, adenylation; SMART: NAD-dependent DNA ligase-like; NAD-dependent DNA ligase 848631..850679 Acidiphilium cryptum JF-5 5160952 YP_001233897.1 CDS Acry_0758 NC_009484.1 850719 851135 R TIGRFAM: RNA polymerase-binding protein DksA; PFAM: zinc finger, DksA/TraR C4-type; TraR/DksA family transcriptional regulator complement(850719..851135) Acidiphilium cryptum JF-5 5160953 YP_001233898.1 CDS Acry_0759 NC_009484.1 851257 851655 R hypothetical protein complement(851257..851655) Acidiphilium cryptum JF-5 5161687 YP_001233899.1 CDS flgI NC_009484.1 851762 852916 D part of the basal body which consists of four rings L, P, S, and M mounted on a central rod; Vibrio parahaemolyticus, Yersinia, Bradyrhizobium and other bacteria have two copies of this and other flagellar genes; the V. parahaemolyticus protein is associated with the polar flagella and the Bradyrhizobium protein is associated with the thick flagellum; flagellar basal body P-ring protein 851762..852916 Acidiphilium cryptum JF-5 5161483 YP_001233900.1 CDS Acry_0761 NC_009484.1 852913 853326 D hypothetical protein 852913..853326 Acidiphilium cryptum JF-5 5161484 YP_001233901.1 CDS Acry_0762 NC_009484.1 853323 853730 D hypothetical protein 853323..853730 Acidiphilium cryptum JF-5 5161351 YP_001233902.1 CDS Acry_0763 NC_009484.1 853782 854795 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 853782..854795 Acidiphilium cryptum JF-5 5161127 YP_001233903.1 CDS Acry_0764 NC_009484.1 854832 856538 R PFAM: response regulator receiver; ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS/PAC sensor hybrid histidine kinase complement(854832..856538) Acidiphilium cryptum JF-5 5161128 YP_001233904.1 CDS Acry_0765 NC_009484.1 856755 857387 R hypothetical protein complement(856755..857387) Acidiphilium cryptum JF-5 5161156 YP_001233905.1 CDS Acry_0766 NC_009484.1 857384 859309 R PFAM: peptidase S15; peptidase S9, prolyl oligopeptidase active site domain protein; dienelactone hydrolase; peptidase S9 prolyl oligopeptidase complement(857384..859309) Acidiphilium cryptum JF-5 5160375 YP_001233906.1 CDS Acry_0767 NC_009484.1 859465 860256 R PFAM: conserved hypothetical protein 245; hypothetical protein complement(859465..860256) Acidiphilium cryptum JF-5 5160376 YP_001233907.1 CDS Acry_0768 NC_009484.1 860253 860852 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(860253..860852) Acidiphilium cryptum JF-5 5160334 YP_001233908.1 CDS Acry_0769 NC_009484.1 860857 862263 R PFAM: peptidase M20; peptidase dimerisation domain protein; hypothetical protein complement(860857..862263) Acidiphilium cryptum JF-5 5160204 YP_001233909.1 CDS phhB NC_009484.1 862329 862616 R 4-alpha-hydroxytetrahydrobiopterin dehydratase activity; catalyzes the formation of (6R)-6-(L-erythro-1,2-dihydroxypropyl)-7, 8-dihydro-6H-pterin from (6R)-6-(L-erythro-1,2-dihydroxypropyl)-5,6,7, 8-tetrahydro-4a-hydroxypterin; functions in recycling tetrahydrobiopterin (BH4) in phenylalanine hydroxylase reaction; pterin-4-alpha-carbinolamine dehydratase complement(862329..862616) Acidiphilium cryptum JF-5 5160205 YP_001233910.1 CDS Acry_0771 NC_009484.1 862613 862954 R hypothetical protein complement(862613..862954) Acidiphilium cryptum JF-5 5159642 YP_001233911.1 CDS Acry_0772 NC_009484.1 863639 864151 R hypothetical protein complement(863639..864151) Acidiphilium cryptum JF-5 5160136 YP_001233912.1 CDS Acry_0773 NC_009484.1 864167 864487 R hypothetical protein complement(864167..864487) Acidiphilium cryptum JF-5 5160137 YP_001233913.1 CDS Acry_0774 NC_009484.1 864857 865138 D hypothetical protein 864857..865138 Acidiphilium cryptum JF-5 5160628 YP_001233914.1 CDS Acry_0775 NC_009484.1 865223 865681 D hypothetical protein 865223..865681 Acidiphilium cryptum JF-5 5162469 YP_001233915.1 CDS Acry_0776 NC_009484.1 865696 866919 D PFAM: transposase, mutator type; transposase, mutator type 865696..866919 Acidiphilium cryptum JF-5 5162470 YP_001233916.1 CDS Acry_0777 NC_009484.1 866992 867198 D hypothetical protein 866992..867198 Acidiphilium cryptum JF-5 5162267 YP_001233917.1 CDS Acry_0778 NC_009484.1 867272 867505 R hypothetical protein complement(867272..867505) Acidiphilium cryptum JF-5 5159665 YP_001233918.1 CDS Acry_0779 NC_009484.1 867765 867989 R hypothetical protein complement(867765..867989) Acidiphilium cryptum JF-5 5159666 YP_001233919.1 CDS Acry_0780 NC_009484.1 868142 868609 R hypothetical protein complement(868142..868609) Acidiphilium cryptum JF-5 5159536 YP_001233920.1 CDS Acry_0781 NC_009484.1 868681 869697 R hypothetical protein complement(868681..869697) Acidiphilium cryptum JF-5 5162149 YP_001233921.1 CDS Acry_0782 NC_009484.1 870032 870448 R hypothetical protein complement(870032..870448) Acidiphilium cryptum JF-5 5162150 YP_001233922.1 CDS Acry_0783 NC_009484.1 870556 871014 R hypothetical protein complement(870556..871014) Acidiphilium cryptum JF-5 5162474 YP_001233923.1 CDS Acry_0784 NC_009484.1 870986 872647 R PFAM: transposase IS66; transposase IS66 complement(870986..872647) Acidiphilium cryptum JF-5 5160654 YP_001233924.1 CDS Acry_0785 NC_009484.1 872721 873062 R PFAM: IS66 Orf2 family protein; IS66 Orf2 family protein complement(872721..873062) Acidiphilium cryptum JF-5 5160655 YP_001233925.1 CDS Acry_0786 NC_009484.1 873059 873454 R PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(873059..873454) Acidiphilium cryptum JF-5 5159898 YP_001233926.1 CDS Acry_0787 NC_009484.1 873540 874160 R hypothetical protein complement(873540..874160) Acidiphilium cryptum JF-5 5160468 YP_001233927.1 CDS Acry_0789 NC_009484.1 875244 876911 R PFAM: protein of unknown function DUF262; hypothetical protein complement(875244..876911) Acidiphilium cryptum JF-5 5161575 YP_001233928.1 CDS Acry_0790 NC_009484.1 877365 878573 R PFAM: transposase, mutator type; transposase, mutator type complement(877365..878573) Acidiphilium cryptum JF-5 5160432 YP_001233929.1 CDS Acry_0791 NC_009484.1 878935 879207 D PFAM: CopG domain protein DNA-binding domain protein; CopG/DNA-binding domain-containing protein 878935..879207 Acidiphilium cryptum JF-5 5159631 YP_001233930.1 CDS Acry_0792 NC_009484.1 879318 881039 D hypothetical protein 879318..881039 Acidiphilium cryptum JF-5 5159632 YP_001233931.1 CDS Acry_0793 NC_009484.1 881039 882118 D PFAM: BsuBIPstI restriction endonuclease domain protein; BsuBIPstI restriction endonuclease domain-containing protein 881039..882118 Acidiphilium cryptum JF-5 5160241 YP_001233932.1 CDS Acry_0794 NC_009484.1 882149 884092 D ATP-dependent OLD family endonuclease 882149..884092 Acidiphilium cryptum JF-5 5160110 YP_001233933.1 CDS Acry_0795 NC_009484.1 884089 886008 D PFAM: UvrD/REP helicase; UvrD/REP helicase 884089..886008 Acidiphilium cryptum JF-5 5162596 YP_001233934.1 CDS Acry_0796 NC_009484.1 886039 886890 D hypothetical protein 886039..886890 Acidiphilium cryptum JF-5 5162597 YP_001233935.1 CDS Acry_0797 NC_009484.1 886732 887985 R PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(886732..887985) Acidiphilium cryptum JF-5 5160672 YP_001233936.1 CDS Acry_0798 NC_009484.1 888350 889558 D PFAM: transposase, mutator type; transposase, mutator type 888350..889558 Acidiphilium cryptum JF-5 5161063 YP_001233937.1 CDS Acry_0799 NC_009484.1 889555 889920 D hypothetical protein 889555..889920 Acidiphilium cryptum JF-5 5161064 YP_001233938.1 CDS Acry_0800 NC_009484.1 890039 890830 D hypothetical protein 890039..890830 Acidiphilium cryptum JF-5 5162515 YP_001233939.1 CDS Acry_0801 NC_009484.1 890827 891621 D hypothetical protein 890827..891621 Acidiphilium cryptum JF-5 5161447 YP_001233940.1 CDS Acry_0802 NC_009484.1 891606 892523 D hypothetical protein 891606..892523 Acidiphilium cryptum JF-5 5161448 YP_001233941.1 CDS Acry_0803 NC_009484.1 892850 893035 R hypothetical protein complement(892850..893035) Acidiphilium cryptum JF-5 5161458 YP_001233942.1 CDS Acry_0804 NC_009484.1 893061 893411 R hypothetical protein complement(893061..893411) Acidiphilium cryptum JF-5 5161481 YP_001233943.1 CDS Acry_0805 NC_009484.1 893412 894635 D PFAM: transposase, mutator type; transposase, mutator type 893412..894635 Acidiphilium cryptum JF-5 5161482 YP_001233944.1 CDS Acry_0806 NC_009484.1 894639 895442 R hypothetical protein complement(894639..895442) Acidiphilium cryptum JF-5 5162077 YP_001233945.1 CDS Acry_0807 NC_009484.1 895655 896686 D PFAM: transposase, IS111A/IS1328/IS1533; transposase IS116/IS110/IS902 family protein; transposase IS116/IS110/IS902 family protein 895655..896686 Acidiphilium cryptum JF-5 5161974 YP_001233946.1 CDS Acry_0808 NC_009484.1 897092 897928 R hypothetical protein complement(897092..897928) Acidiphilium cryptum JF-5 5161975 YP_001233947.1 CDS Acry_0809 NC_009484.1 897955 898227 R hypothetical protein complement(897955..898227) Acidiphilium cryptum JF-5 5162045 YP_001233948.1 CDS Acry_0810 NC_009484.1 898450 901809 R hypothetical protein complement(898450..901809) Acidiphilium cryptum JF-5 5162011 YP_001233949.1 CDS Acry_0811 NC_009484.1 901806 903236 R PFAM: phage integrase family protein; phage integrase family protein complement(901806..903236) Acidiphilium cryptum JF-5 5162012 YP_001233950.1 CDS Acry_0812 NC_009484.1 903410 903670 R hypothetical protein complement(903410..903670) Acidiphilium cryptum JF-5 5162141 YP_001233951.1 CDS Acry_0813 NC_009484.1 903673 904332 R PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(903673..904332) Acidiphilium cryptum JF-5 5159527 YP_001233952.1 CDS Acry_0814 NC_009484.1 904342 905352 R PFAM: Alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein complement(904342..905352) Acidiphilium cryptum JF-5 5159528 YP_001233953.1 CDS Acry_0815 NC_009484.1 905429 905668 D hypothetical protein 905429..905668 Acidiphilium cryptum JF-5 5160897 YP_001233954.1 CDS Acry_0816 NC_009484.1 905717 906553 D TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase, DHPS; dihydropteroate synthase 905717..906553 Acidiphilium cryptum JF-5 5161694 YP_001233955.1 CDS glmM NC_009484.1 906629 907999 D catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; phosphoglucosamine mutase 906629..907999 Acidiphilium cryptum JF-5 5161695 YP_001233956.1 CDS Acry_0818 NC_009484.1 908008 908826 D TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 908008..908826 Acidiphilium cryptum JF-5 5162361 YP_001233957.1 CDS Acry_0819 NC_009484.1 908866 909288 D PFAM: OsmC family protein; OsmC family protein 908866..909288 Acidiphilium cryptum JF-5 5161781 YP_001233958.1 CDS Acry_0820 NC_009484.1 909425 910636 D response regulator receiver protein 909425..910636 Acidiphilium cryptum JF-5 5161782 YP_001233959.1 CDS Acry_0821 NC_009484.1 910889 911956 D PFAM: Inositol phosphatase/fructose-1,6-bisphosphatase; inositol phosphatase/fructose-1,6-bisphosphatase 910889..911956 Acidiphilium cryptum JF-5 5161624 YP_001233960.1 CDS Acry_0822 NC_009484.1 911953 912828 D PFAM: phosphoribulokinase/uridine kinase; phosphoribulokinase 911953..912828 Acidiphilium cryptum JF-5 5162412 YP_001233961.1 CDS Acry_0823 NC_009484.1 912877 913956 D TIGRFAM: ketose-bisphosphate aldolase; fructose-bisphosphate aldolase, class II, Calvin cycle subtype; PFAM: ketose-bisphosphate aldolase, class-II; fructose-bisphosphate aldolase 912877..913956 Acidiphilium cryptum JF-5 5162413 YP_001233962.1 CDS rbcL NC_009484.1 913983 915464 D type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase 913983..915464 Acidiphilium cryptum JF-5 5161365 YP_001233963.1 CDS Acry_0825 NC_009484.1 915477 915905 D PFAM: ribulose bisphosphate carboxylase, small chain; ribulose-bisphosphate carboxylase 915477..915905 Acidiphilium cryptum JF-5 5162241 YP_001233964.1 CDS Acry_0826 NC_009484.1 915917 916837 D PFAM: AAA ATPase, central domain protein; SMART: AAA ATPase; ATPase central domain-containing protein 915917..916837 Acidiphilium cryptum JF-5 5162242 YP_001233965.1 CDS Acry_0827 NC_009484.1 916824 917501 D PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 916824..917501 Acidiphilium cryptum JF-5 5161651 YP_001233966.1 CDS Acry_0828 NC_009484.1 917514 918797 R Catalyzes the deamination of cytosine to uracil and ammonia; cytosine deaminase complement(917514..918797) Acidiphilium cryptum JF-5 5161555 YP_001233967.1 CDS Acry_0829 NC_009484.1 918794 919432 R catalyzes the formation of pyridoxal 5'-phosphate from pyridoxamine 5'-phosphate; pyridoxamine 5'-phosphate oxidase complement(918794..919432) Acidiphilium cryptum JF-5 5161556 YP_001233968.1 CDS Acry_0830 NC_009484.1 919484 920320 D PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 919484..920320 Acidiphilium cryptum JF-5 5160363 YP_001233969.1 CDS Acry_0831 NC_009484.1 920367 920609 R hypothetical protein complement(920367..920609) Acidiphilium cryptum JF-5 5161468 YP_001233970.1 CDS Acry_0832 NC_009484.1 920606 921370 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(920606..921370) Acidiphilium cryptum JF-5 5161312 YP_001233971.1 CDS Acry_0833 NC_009484.1 921367 922107 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(921367..922107) Acidiphilium cryptum JF-5 5161313 YP_001233972.1 CDS Acry_0834 NC_009484.1 922109 923119 R ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein complement(922109..923119) Acidiphilium cryptum JF-5 5161423 YP_001233973.1 CDS Acry_0835 NC_009484.1 923192 923527 D PFAM: protein of unknown function DUF1491; hypothetical protein 923192..923527 Acidiphilium cryptum JF-5 5161389 YP_001233974.1 CDS Acry_0836 NC_009484.1 923585 924409 R PFAM: formate/nitrite transporter; formate/nitrite transporter complement(923585..924409) Acidiphilium cryptum JF-5 5161390 YP_001233975.1 CDS Acry_0837 NC_009484.1 924651 924881 R hypothetical protein complement(924651..924881) Acidiphilium cryptum JF-5 5161427 YP_001233976.1 CDS Acry_0838 NC_009484.1 924871 925698 R TIGRFAM: formate dehydrogenase family accessory protein FdhD; PFAM: formate dehydrogenase, subunit FdhD; formate dehydrogenase family accessory protein FdhD complement(924871..925698) Acidiphilium cryptum JF-5 5160800 YP_001233977.1 CDS Acry_0839 NC_009484.1 925695 928535 R TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: ferredoxin; 4Fe-4S ferredoxin, iron-sulfur binding domain protein; molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; formate dehydrogenase subunit alpha complement(925695..928535) Acidiphilium cryptum JF-5 5160801 YP_001233978.1 CDS Acry_0840 NC_009484.1 928548 930098 R PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH dehydrogenase (quinone) complement(928548..930098) Acidiphilium cryptum JF-5 5161388 YP_001233979.1 CDS Acry_0841 NC_009484.1 930098 930571 R PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH dehydrogenase (ubiquinone), 24 kDa subunit complement(930098..930571) Acidiphilium cryptum JF-5 5161333 YP_001233980.1 CDS Acry_0842 NC_009484.1 930712 931611 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(930712..931611) Acidiphilium cryptum JF-5 5161334 YP_001233981.1 CDS Acry_0843 NC_009484.1 931608 932681 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(931608..932681) Acidiphilium cryptum JF-5 5161104 YP_001233982.1 CDS Acry_0844 NC_009484.1 932765 934078 R TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase, middle domain protein; bifunctional folylpolyglutamate synthase/ dihydrofolate synthase complement(932765..934078) Acidiphilium cryptum JF-5 5161262 YP_001233983.1 CDS Acry_0845 NC_009484.1 934075 934944 R TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, beta subunit; acetyl-CoA carboxylase, carboxyl transferase subunit beta complement(934075..934944) Acidiphilium cryptum JF-5 5161263 YP_001233984.1 CDS Acry_0846 NC_009484.1 934955 935488 R hypothetical protein complement(934955..935488) Acidiphilium cryptum JF-5 5161119 YP_001233985.1 CDS Acry_0847 NC_009484.1 935511 936251 R PFAM: glutamine amidotransferase class-I; peptidase C26; peptidase C26 complement(935511..936251) Acidiphilium cryptum JF-5 5161200 YP_001233986.1 CDS Acry_0848 NC_009484.1 936273 937487 R TIGRFAM: drug resistance transporter, Bcr/CflA subfamily; PFAM: major facilitator superfamily MFS_1; Bcr/CflA subfamily drug resistance transporter complement(936273..937487) Acidiphilium cryptum JF-5 5161201 YP_001233987.1 CDS Acry_0849 NC_009484.1 937607 937996 R PFAM: protein of unknown function DUF202; hypothetical protein complement(937607..937996) Acidiphilium cryptum JF-5 5160417 YP_001233988.1 CDS Acry_0850 NC_009484.1 937993 938892 R catalyzes the transamination of the branched-chain amino acids to their respective alpha-keto acids; branched-chain amino acid aminotransferase complement(937993..938892) Acidiphilium cryptum JF-5 5161055 YP_001233989.1 CDS Acry_0851 NC_009484.1 939100 939618 D PFAM: regulatory protein, MarR; MarR family transcriptional regulator 939100..939618 Acidiphilium cryptum JF-5 5161056 YP_001233990.1 CDS Acry_0852 NC_009484.1 939615 940310 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 939615..940310 Acidiphilium cryptum JF-5 5161037 YP_001233991.1 CDS Acry_0853 NC_009484.1 940307 941632 D PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 940307..941632 Acidiphilium cryptum JF-5 5161047 YP_001233992.1 CDS Acry_0854 NC_009484.1 941866 943350 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 941866..943350 Acidiphilium cryptum JF-5 5161048 YP_001233993.1 CDS Acry_0855 NC_009484.1 943307 944014 R PFAM: protein of unknown function DUF541; hypothetical protein complement(943307..944014) Acidiphilium cryptum JF-5 5162355 YP_001233994.1 CDS Acry_0856 NC_009484.1 944300 945811 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 944300..945811 Acidiphilium cryptum JF-5 5160478 YP_001233995.1 CDS Acry_0857 NC_009484.1 945808 947034 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 945808..947034 Acidiphilium cryptum JF-5 5160479 YP_001233996.1 CDS Acry_0858 NC_009484.1 947091 947924 R hypothetical protein complement(947091..947924) Acidiphilium cryptum JF-5 5160555 YP_001233997.1 CDS Acry_0859 NC_009484.1 948009 950438 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 948009..950438 Acidiphilium cryptum JF-5 5160361 YP_001233998.1 CDS Acry_0860 NC_009484.1 950490 950960 D PFAM: GatB/Yqey domain protein; GatB/Yqey domain-containing protein 950490..950960 Acidiphilium cryptum JF-5 5160362 YP_001233999.1 CDS Acry_0861 NC_009484.1 950957 952786 D TIGRFAM: DNA primase; PFAM: zinc finger, CHC2-family protein; TOPRIM domain protein; DNA primase catalytic core, N-terminal domain; SMART: Toprim sub domain protein; DNA primase 950957..952786 Acidiphilium cryptum JF-5 5160480 YP_001234000.1 CDS Acry_0862 NC_009484.1 952829 954745 D sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; this is the primary sigma factor of bacteria; RNA polymerase sigma factor RpoD 952829..954745 Acidiphilium cryptum JF-5 5160402 YP_001234001.1 CDS Acry_0863 NC_009484.1 954755 955354 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 954755..955354 Acidiphilium cryptum JF-5 5160403 YP_001234002.1 CDS Acry_0864 NC_009484.1 955392 956066 D PFAM: pseudouridine synthase; pseudouridine synthase 955392..956066 Acidiphilium cryptum JF-5 5162287 YP_001234003.1 CDS Acry_0865 NC_009484.1 956019 957392 R PFAM: glycosyl transferase, family 20; Alpha,alpha-trehalose-phosphate synthase complement(956019..957392) Acidiphilium cryptum JF-5 5160284 YP_001234004.1 CDS Acry_0866 NC_009484.1 957395 958105 R TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: trehalose-phosphatase; HAD family hydrolase complement(957395..958105) Acidiphilium cryptum JF-5 5160285 YP_001234005.1 CDS Acry_0867 NC_009484.1 958169 959686 R PFAM: glycosyl transferase, family 39; glycosyl transferase family protein complement(958169..959686) Acidiphilium cryptum JF-5 5159679 YP_001234006.1 CDS Acry_0868 NC_009484.1 960451 960885 D PFAM: protein of unknown function DUF461; hypothetical protein 960451..960885 Acidiphilium cryptum JF-5 5159657 YP_001234007.1 CDS Acry_0869 NC_009484.1 961321 962010 R PFAM: electron transport protein SCO1/SenC; electron transport protein SCO1/SenC complement(961321..962010) Acidiphilium cryptum JF-5 5159616 YP_001234008.1 CDS gatB NC_009484.1 962007 963470 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit B complement(962007..963470) Acidiphilium cryptum JF-5 5159617 YP_001234009.1 CDS gatA NC_009484.1 963467 964948 R allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases; reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA; aspartyl/glutamyl-tRNA amidotransferase subunit A complement(963467..964948) Acidiphilium cryptum JF-5 5159664 YP_001234010.1 CDS Acry_0872 NC_009484.1 964945 965232 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase, C subunit; glutamyl-tRNA(Gln) amidotransferase subunit C complement(964945..965232) Acidiphilium cryptum JF-5 5159914 YP_001234011.1 CDS Acry_0873 NC_009484.1 965279 965755 D PFAM: Holliday junction resolvase YqgF; SMART: Resolvase, RNase H domain protein fold; Holliday junction resolvase YqgF 965279..965755 Acidiphilium cryptum JF-5 5159915 YP_001234012.1 CDS Acry_0874 NC_009484.1 965950 966864 D hypothetical protein 965950..966864 Acidiphilium cryptum JF-5 5159623 YP_001234013.1 CDS Acry_0875 NC_009484.1 966965 967501 D PFAM: glycoside hydrolase, family 24; glycoside hydrolase family protein 966965..967501 Acidiphilium cryptum JF-5 5159489 YP_001234014.1 CDS Acry_0876 NC_009484.1 967693 968277 D hypothetical protein 967693..968277 Acidiphilium cryptum JF-5 5159490 YP_001234015.1 CDS Acry_0877 NC_009484.1 968938 969480 D hypothetical protein 968938..969480 Acidiphilium cryptum JF-5 5160210 YP_001234016.1 CDS Acry_0878 NC_009484.1 970200 970466 D hypothetical protein 970200..970466 Acidiphilium cryptum JF-5 5159950 YP_001234017.1 CDS Acry_0879 NC_009484.1 970564 971007 D hypothetical protein 970564..971007 Acidiphilium cryptum JF-5 5159951 YP_001234018.1 CDS Acry_0880 NC_009484.1 971120 971896 D hypothetical protein 971120..971896 Acidiphilium cryptum JF-5 5160193 YP_001234019.1 CDS Acry_0881 NC_009484.1 971897 973954 R PFAM: phosphoesterase; phosphoesterase complement(971897..973954) Acidiphilium cryptum JF-5 5160077 YP_001234020.1 CDS Acry_0882 NC_009484.1 974045 974443 R PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase complement(974045..974443) Acidiphilium cryptum JF-5 5160078 YP_001234021.1 CDS Acry_0883 NC_009484.1 974524 974961 D TIGRFAM: general secretion pathway protein G; PFAM: type II secretion system protein G; general secretion pathway protein G 974524..974961 Acidiphilium cryptum JF-5 5159446 YP_001234022.1 CDS Acry_0884 NC_009484.1 974969 975766 R hypothetical protein complement(974969..975766) Acidiphilium cryptum JF-5 5159912 YP_001234023.1 CDS Acry_0885 NC_009484.1 975769 978039 R TIGRFAM: general secretion pathway protein D; PFAM: type II and III secretion system protein; NolW domain protein; general secretion pathway protein D complement(975769..978039) Acidiphilium cryptum JF-5 5159913 YP_001234024.1 CDS Acry_0886 NC_009484.1 978063 978413 R hypothetical protein complement(978063..978413) Acidiphilium cryptum JF-5 5160070 YP_001234025.1 CDS Acry_0887 NC_009484.1 978569 979150 R hypothetical protein complement(978569..979150) Acidiphilium cryptum JF-5 5162418 YP_001234026.1 CDS Acry_0888 NC_009484.1 979155 980207 R PFAM: Fimbrial assembly family protein; fimbrial assembly family protein complement(979155..980207) Acidiphilium cryptum JF-5 5162419 YP_001234027.1 CDS Acry_0889 NC_009484.1 980257 980853 R hypothetical protein complement(980257..980853) Acidiphilium cryptum JF-5 5162489 YP_001234028.1 CDS Acry_0890 NC_009484.1 980850 981218 R hypothetical protein complement(980850..981218) Acidiphilium cryptum JF-5 5159533 YP_001234029.1 CDS Acry_0891 NC_009484.1 981202 981669 R hypothetical protein complement(981202..981669) Acidiphilium cryptum JF-5 5159534 YP_001234030.1 CDS Acry_0892 NC_009484.1 981653 982873 R PFAM: type II secretion system protein; type II secretion system protein complement(981653..982873) Acidiphilium cryptum JF-5 5159865 YP_001234031.1 CDS Acry_0893 NC_009484.1 982886 984559 R PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; type II secretion system protein E complement(982886..984559) Acidiphilium cryptum JF-5 5159841 YP_001234032.1 CDS Acry_0894 NC_009484.1 984629 985387 D PFAM: peptidase A24A, prepilin type IV; peptidase A24A domain protein; peptidase A24A domain-containing protein 984629..985387 Acidiphilium cryptum JF-5 5159842 YP_001234033.1 CDS Acry_0895 NC_009484.1 985507 988347 D hypothetical protein 985507..988347 Acidiphilium cryptum JF-5 5162479 YP_001234034.1 CDS Acry_0896 NC_009484.1 988630 990957 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor complement(988630..990957) Acidiphilium cryptum JF-5 5162490 YP_001234035.1 CDS Acry_0897 NC_009484.1 991181 991402 R hypothetical protein complement(991181..991402) Acidiphilium cryptum JF-5 5162491 YP_001234036.1 CDS Acry_0898 NC_009484.1 991399 991977 R hypothetical protein complement(991399..991977) Acidiphilium cryptum JF-5 5162225 YP_001234037.1 CDS guaA NC_009484.1 992345 993907 R contains glutamine-hydrolyzing domain and glutamine amidotransferase; GMP-binding domain; functions to produce GMP from XMP in the IMP pathway; GMP synthase complement(992345..993907) Acidiphilium cryptum JF-5 5162547 YP_001234038.1 CDS Acry_0900 NC_009484.1 993980 994645 R PFAM: dienelactone hydrolase; carboxymethylenebutenolidase complement(993980..994645) Acidiphilium cryptum JF-5 5162548 YP_001234039.1 CDS Acry_0901 NC_009484.1 994648 995142 R hydrolyzes diadenosine polyphosphate; dinucleoside polyphosphate hydrolase complement(994648..995142) Acidiphilium cryptum JF-5 5162522 YP_001234040.1 CDS Acry_0902 NC_009484.1 995139 996122 R PFAM: protein of unknown function DUF610, YibQ; hypothetical protein complement(995139..996122) Acidiphilium cryptum JF-5 5162191 YP_001234041.1 CDS Acry_0903 NC_009484.1 996109 997482 R TIGRFAM: carboxyl-terminal protease; PFAM: PDZ/DHR/GLGF domain protein; peptidase S41; carboxyl-terminal protease complement(996109..997482) Acidiphilium cryptum JF-5 5162192 YP_001234042.1 CDS Acry_0904 NC_009484.1 997555 998733 R PFAM: peptidase M23B; peptidase M23B complement(997555..998733) Acidiphilium cryptum JF-5 5162279 YP_001234043.1 CDS Acry_0905 NC_009484.1 998733 1000250 R catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate; phosphoglyceromutase complement(998733..1000250) Acidiphilium cryptum JF-5 5162091 YP_001234044.1 CDS Acry_0906 NC_009484.1 1000347 1001120 D TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; TatD family hydrolase 1000347..1001120 Acidiphilium cryptum JF-5 5162393 YP_001234045.1 CDS Acry_0907 NC_009484.1 1001117 1001920 D PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 1001117..1001920 Acidiphilium cryptum JF-5 5162394 YP_001234046.1 CDS Acry_0908 NC_009484.1 1001917 1003122 D PFAM: peptidase M29, aminopeptidase II; peptidase M29, aminopeptidase II 1001917..1003122 Acidiphilium cryptum JF-5 5162546 YP_001234047.1 CDS Acry_0909 NC_009484.1 1003139 1004335 R catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase complement(1003139..1004335) Acidiphilium cryptum JF-5 5162273 YP_001234048.1 CDS greA NC_009484.1 1004340 1004813 R necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites; arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus; transcription elongation factor GreA complement(1004340..1004813) Acidiphilium cryptum JF-5 5162274 YP_001234049.1 CDS carB NC_009484.1 1004895 1008140 R four CarB-CarA dimers form the carbamoyl phosphate synthetase holoenzyme that catalyzes the production of carbamoyl phosphate; CarB is responsible for the amidotransferase activity; carbamoyl phosphate synthase large subunit complement(1004895..1008140) Acidiphilium cryptum JF-5 5162587 YP_001234050.1 CDS Acry_0912 NC_009484.1 1008143 1009486 R catalyzes production of carbamoyl phosphate from bicarbonate and glutamine in pyrimidine and arginine biosynthesis pathways; forms an octamer composed of four CarAB dimers; carbamoyl phosphate synthase small subunit complement(1008143..1009486) Acidiphilium cryptum JF-5 5162184 YP_001234051.1 CDS Acry_0913 NC_009484.1 1009622 1012270 D This protein performs the mismatch recognition step during the DNA repair process; DNA mismatch repair protein MutS 1009622..1012270 Acidiphilium cryptum JF-5 5162185 YP_001234052.1 CDS Acry_0914 NC_009484.1 1012272 1015088 D catalyzes the uridylylation or deuridylylation of the PII nitrogen regulatory protein; PII uridylyl-transferase 1012272..1015088 Acidiphilium cryptum JF-5 5162092 YP_001234053.1 CDS Acry_0915 NC_009484.1 1015253 1017229 D TIGRFAM: outer membrane autotransporter barrel domain; PFAM: lipolytic enzyme, G-D-S-L family; Autotransporter beta- domain protein; outer membrane autotransporter 1015253..1017229 Acidiphilium cryptum JF-5 5162535 YP_001234054.1 CDS tig NC_009484.1 1017496 1018818 D Tig; RopA; peptidyl-prolyl cis/trans isomerase; promotes folding of newly synthesized proteins; binds ribosomal 50S subunit; forms a homodimer; trigger factor 1017496..1018818 Acidiphilium cryptum JF-5 5161576 YP_001234055.1 CDS clpP NC_009484.1 1018970 1019605 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 1018970..1019605 Acidiphilium cryptum JF-5 5162456 YP_001234056.1 CDS clpX NC_009484.1 1019750 1021006 D binds and unfolds substrates as part of the ClpXP protease; ATP-dependent protease ATP-binding subunit ClpX 1019750..1021006 Acidiphilium cryptum JF-5 5160394 YP_001234057.1 CDS Acry_0919 NC_009484.1 1021142 1023583 D TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16, lon domain protein; AAA ATPase, central domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent protease La 1021142..1023583 Acidiphilium cryptum JF-5 5160395 YP_001234058.1 CDS Acry_0920 NC_009484.1 1023777 1024040 D PFAM: histone family protein DNA-binding protein; histone family protein DNA-binding protein 1023777..1024040 Acidiphilium cryptum JF-5 5159798 YP_001234059.1 CDS Acry_0921 NC_009484.1 1024776 1025141 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 1024776..1025141 Acidiphilium cryptum JF-5 5161657 YP_001234060.1 CDS Acry_0922 NC_009484.1 1025217 1025777 D The point of entry for the majority of electrons that traverse the respiratory chain eventually resulting in the reduction of oxygen; NADH dehydrogenase subunit B 1025217..1025777 Acidiphilium cryptum JF-5 5160633 YP_001234061.1 CDS Acry_0923 NC_009484.1 1025770 1026411 D TIGRFAM: NADH (or F420H2) dehydrogenase, subunit C; PFAM: NADH dehydrogenase (ubiquinone), 30 kDa subunit; NADH (or F420H2) dehydrogenase subunit C 1025770..1026411 Acidiphilium cryptum JF-5 5160595 YP_001234062.1 CDS Acry_0924 NC_009484.1 1026408 1027628 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit D 1026408..1027628 Acidiphilium cryptum JF-5 5161790 YP_001234063.1 CDS Acry_0925 NC_009484.1 1027632 1028243 D TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH-quinone oxidoreductase subunit E 1027632..1028243 Acidiphilium cryptum JF-5 5161791 YP_001234064.1 CDS Acry_0926 NC_009484.1 1028245 1029540 D part of NADH-ubiquinone oxidoreductase complex I; shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; NuoF is part of the soluble NADH dehydrogenase fragment, which represents the electron input part of NADH dehydrogenase; NADH dehydrogenase I subunit F 1028245..1029540 Acidiphilium cryptum JF-5 5162015 YP_001234065.1 CDS Acry_0927 NC_009484.1 1029608 1031668 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit G 1029608..1031668 Acidiphilium cryptum JF-5 5162176 YP_001234066.1 CDS Acry_0928 NC_009484.1 1031674 1032690 D PFAM: respiratory-chain NADH dehydrogenase, subunit 1; NADH dehydrogenase (quinone) 1031674..1032690 Acidiphilium cryptum JF-5 5162177 YP_001234067.1 CDS Acry_0929 NC_009484.1 1032703 1033194 D Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit I 1032703..1033194 Acidiphilium cryptum JF-5 5162190 YP_001234068.1 CDS Acry_0930 NC_009484.1 1033201 1033851 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 1033201..1033851 Acidiphilium cryptum JF-5 5162305 YP_001234069.1 CDS Acry_0931 NC_009484.1 1033848 1034159 D PFAM: NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase subunit 4L 1033848..1034159 Acidiphilium cryptum JF-5 5162306 YP_001234070.1 CDS Acry_0932 NC_009484.1 1034166 1036094 D TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L 1034166..1036094 Acidiphilium cryptum JF-5 5161349 YP_001234071.1 CDS Acry_0933 NC_009484.1 1036108 1037625 D TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 1036108..1037625 Acidiphilium cryptum JF-5 5161643 YP_001234072.1 CDS Acry_0934 NC_009484.1 1037634 1039070 D TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N 1037634..1039070 Acidiphilium cryptum JF-5 5161644 YP_001234073.1 CDS Acry_0935 NC_009484.1 1039067 1039795 D TIGRFAM: biotin--acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; biotin--acetyl-CoA-carboxylase ligase 1039067..1039795 Acidiphilium cryptum JF-5 5159992 YP_001234074.1 CDS Acry_0936 NC_009484.1 1039817 1040617 D type III; catalyzes the formation of (R)-4'-phosphopantothenate from (R)-pantothenate in coenzyme A biosynthesis; type III pantothenate kinases are not subject to feedback inhibition from coenzyme A and have a high Km for ATP; pantothenate kinase 1039817..1040617 Acidiphilium cryptum JF-5 5160807 YP_001234075.1 CDS Acry_0937 NC_009484.1 1040652 1042298 D PFAM: beta-lactamase domain protein; RNA-metabolising metallo-beta-lactamase; beta-lactamase domain-containing protein 1040652..1042298 Acidiphilium cryptum JF-5 5160808 YP_001234076.1 CDS Acry_0938 NC_009484.1 1042550 1043644 D PFAM: acyltransferase 3; acyltransferase 3 1042550..1043644 Acidiphilium cryptum JF-5 5162381 YP_001234077.1 CDS Acry_0939 NC_009484.1 1043678 1044991 D catalyzes the formation of prolyl-tRNA(Pro) from proline and tRNA(Pro); prolyl-tRNA synthetase 1043678..1044991 Acidiphilium cryptum JF-5 5161110 YP_001234078.1 CDS Acry_0940 NC_009484.1 1044991 1046238 D TIGRFAM: lipoprotein releasing system, transmembrane protein, LolC/E family; PFAM: protein of unknown function DUF214; LolC/E family lipoprotein releasing system, transmembrane protein 1044991..1046238 Acidiphilium cryptum JF-5 5161111 YP_001234079.1 CDS Acry_0941 NC_009484.1 1046231 1046908 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1046231..1046908 Acidiphilium cryptum JF-5 5161145 YP_001234080.1 CDS Acry_0942 NC_009484.1 1046931 1047869 D PFAM: Alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein 1046931..1047869 Acidiphilium cryptum JF-5 5161146 YP_001234081.1 CDS Acry_0943 NC_009484.1 1047859 1048329 D hypothetical protein 1047859..1048329 Acidiphilium cryptum JF-5 5161071 YP_001234082.1 CDS Acry_0944 NC_009484.1 1048289 1050094 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(1048289..1050094) Acidiphilium cryptum JF-5 5161072 YP_001234083.1 CDS Acry_0945 NC_009484.1 1050162 1051766 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; FAD dependent oxidoreductase 1050162..1051766 Acidiphilium cryptum JF-5 5159689 YP_001234084.1 CDS Acry_0946 NC_009484.1 1051867 1052637 R TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; exodeoxyribonuclease III Xth complement(1051867..1052637) Acidiphilium cryptum JF-5 5159978 YP_001234085.1 CDS Acry_0948 NC_009484.1 1053066 1054208 D TIGRFAM: putative deoxyguanosinetriphosphate triphosphohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; putative deoxyguanosinetriphosphate triphosphohydrolase 1053066..1054208 Acidiphilium cryptum JF-5 5161603 YP_001234086.1 CDS argS NC_009484.1 1054218 1056008 D catalyzes a two-step reaction, first charging an arginine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class-I aminoacyl-tRNA synthetase; arginyl-tRNA synthetase 1054218..1056008 Acidiphilium cryptum JF-5 5160172 YP_001234087.1 CDS Acry_0950 NC_009484.1 1056034 1056912 D PFAM: Sporulation domain protein; sporulation domain-containing protein 1056034..1056912 Acidiphilium cryptum JF-5 5160164 YP_001234088.1 CDS Acry_0951 NC_009484.1 1056923 1057849 D PFAM: glycoside hydrolase, family 3 domain protein; beta-N-acetylhexosaminidase 1056923..1057849 Acidiphilium cryptum JF-5 5160165 YP_001234089.1 CDS Acry_0952 NC_009484.1 1057846 1058541 D PFAM: peptidase M50; peptidase M50 1057846..1058541 Acidiphilium cryptum JF-5 5159878 YP_001234090.1 CDS Acry_0953 NC_009484.1 1058528 1059322 D PFAM: chromosome segregation and condensation protein ScpA; chromosome segregation and condensation protein ScpA 1058528..1059322 Acidiphilium cryptum JF-5 5159586 YP_001234091.1 CDS Acry_0954 NC_009484.1 1059315 1059872 D TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; putative transcriptional regulator 1059315..1059872 Acidiphilium cryptum JF-5 5159587 YP_001234092.1 CDS Acry_0955 NC_009484.1 1059960 1060364 D hypothetical protein 1059960..1060364 Acidiphilium cryptum JF-5 5159643 YP_001234093.1 CDS Acry_0956 NC_009484.1 1060374 1061180 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; Sec-independent protein translocase subunit TatC 1060374..1061180 Acidiphilium cryptum JF-5 5161949 YP_001234094.1 CDS Acry_0957 NC_009484.1 1061173 1062474 D catalyzes a two-step reaction, first charging a serine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; seryl-tRNA synthetase 1061173..1062474 Acidiphilium cryptum JF-5 5161950 YP_001234095.1 CDS Acry_0958 NC_009484.1 1062557 1063426 D PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 1062557..1063426 Acidiphilium cryptum JF-5 5160827 YP_001234096.1 CDS Acry_0959 NC_009484.1 1063445 1063882 D PFAM: protein of unknown function DUF395, YeeE/YedE; hypothetical protein 1063445..1063882 Acidiphilium cryptum JF-5 5160343 YP_001234097.1 CDS Acry_0960 NC_009484.1 1063882 1064346 D PFAM: protein of unknown function DUF395, YeeE/YedE; hypothetical protein 1063882..1064346 Acidiphilium cryptum JF-5 5160344 YP_001234098.1 CDS Acry_0961 NC_009484.1 1064295 1064702 R PFAM: regulatory protein, ArsR; regulatory protein ArsR complement(1064295..1064702) Acidiphilium cryptum JF-5 5160207 YP_001234099.1 CDS Acry_0962 NC_009484.1 1064853 1065620 R PFAM: thiazole biosynthesis family protein; thiazole biosynthesis family protein complement(1064853..1065620) Acidiphilium cryptum JF-5 5159673 YP_001234100.1 CDS Acry_0963 NC_009484.1 1065622 1065828 R TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; thiamine biosynthesis protein ThiS complement(1065622..1065828) Acidiphilium cryptum JF-5 5159674 YP_001234101.1 CDS Acry_0964 NC_009484.1 1065825 1066946 R TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; glycine oxidase ThiO complement(1065825..1066946) Acidiphilium cryptum JF-5 5160010 YP_001234102.1 CDS Acry_0965 NC_009484.1 1066951 1068771 R required for the synthesis of the hydromethylpyrimidine moiety of thiamine; thiamine biosynthesis protein ThiC complement(1066951..1068771) Acidiphilium cryptum JF-5 5161967 YP_001234103.1 CDS Acry_0966 NC_009484.1 1069191 1071074 D TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS/PAC sensor-containing diguanylate cyclase/phosphodiesterase 1069191..1071074 Acidiphilium cryptum JF-5 5161968 YP_001234104.1 CDS Acry_0967 NC_009484.1 1071149 1071811 D PFAM: DSBA oxidoreductase; DSBA oxidoreductase 1071149..1071811 Acidiphilium cryptum JF-5 5161940 YP_001234105.1 CDS Acry_0968 NC_009484.1 1071854 1072813 D TIGRFAM: lytic murein transglycosylase; lytic murein transglycosylase 1071854..1072813 Acidiphilium cryptum JF-5 5162079 YP_001234106.1 CDS Acry_0969 NC_009484.1 1072810 1073697 D PFAM: Rare lipoprotein A; Sporulation domain protein; rare lipoprotein A 1072810..1073697 Acidiphilium cryptum JF-5 5162080 YP_001234107.1 CDS Acry_0970 NC_009484.1 1073694 1074326 D PFAM: thymidylate kinase; dTMP kinase 1073694..1074326 Acidiphilium cryptum JF-5 5161958 YP_001234108.1 CDS Acry_0971 NC_009484.1 1074326 1075294 D catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the delta' subunit seems to interact with the gamma subunit to transfer the beta subunit on the DNA; DNA polymerase III subunit delta' 1074326..1075294 Acidiphilium cryptum JF-5 5161959 YP_001234109.1 CDS Acry_0972 NC_009484.1 1075291 1076826 D TIGRFAM: methionyl-tRNA synthetase; PFAM: methionyl-tRNA synthetase, class Ia; methionyl-tRNA synthetase 1075291..1076826 Acidiphilium cryptum JF-5 5161960 YP_001234110.1 CDS fliM NC_009484.1 1076896 1077909 R with FliG and FliN makes up the switch complex which is involved in switching the direction of the flagella rotation; Bradyrhizobium has one thick flagellum and several thin flagella; the protein in this cluster is associated with the thick flagellum; flagellar motor switch protein FliM complement(1076896..1077909) Acidiphilium cryptum JF-5 5162046 YP_001234111.1 CDS Acry_0974 NC_009484.1 1078066 1079571 D hypothetical protein 1078066..1079571 Acidiphilium cryptum JF-5 5162013 YP_001234112.1 CDS Acry_0975 NC_009484.1 1079578 1080210 R hypothetical protein complement(1079578..1080210) Acidiphilium cryptum JF-5 5162014 YP_001234113.1 CDS Acry_0976 NC_009484.1 1080207 1080983 R PFAM: glycosyl transferase, family 2; glycosyl transferase family protein complement(1080207..1080983) Acidiphilium cryptum JF-5 5162139 YP_001234114.1 CDS Acry_0977 NC_009484.1 1081211 1082305 R PFAM: Collagen triple helix repeat; triple helix repeat-containing collagen complement(1081211..1082305) Acidiphilium cryptum JF-5 5162142 YP_001234115.1 CDS Acry_0978 NC_009484.1 1082634 1083566 D PFAM: GCN5-related N-acetyltransferase; regulatory protein, MarR; transcriptional regulator PadR family protein; MarR family transcriptional regulator 1082634..1083566 Acidiphilium cryptum JF-5 5162143 YP_001234116.1 CDS Acry_0979 NC_009484.1 1083578 1084426 R PFAM: metallophosphoesterase; metallophosphoesterase complement(1083578..1084426) Acidiphilium cryptum JF-5 5162170 YP_001234117.1 CDS Acry_0980 NC_009484.1 1084420 1085208 R PFAM: inositol monophosphatase; inositol monophosphatase complement(1084420..1085208) Acidiphilium cryptum JF-5 5161529 YP_001234118.1 CDS Acry_0981 NC_009484.1 1085205 1086266 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein complement(1085205..1086266) Acidiphilium cryptum JF-5 5161779 YP_001234119.1 CDS Acry_0983 NC_009484.1 1087045 1087911 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1087045..1087911) Acidiphilium cryptum JF-5 5161635 YP_001234120.1 CDS Acry_0984 NC_009484.1 1087908 1089008 R PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1087908..1089008) Acidiphilium cryptum JF-5 5159596 YP_001234121.1 CDS Acry_0985 NC_009484.1 1089166 1090362 R hypothetical protein complement(1089166..1090362) Acidiphilium cryptum JF-5 5161846 YP_001234122.1 CDS Acry_0986 NC_009484.1 1090442 1091317 D PFAM: small multidrug resistance protein; small multidrug resistance protein 1090442..1091317 Acidiphilium cryptum JF-5 5161847 YP_001234123.1 CDS Acry_0987 NC_009484.1 1091492 1092436 D PFAM: Substrate-binding region of ABC-type glycine betaine transport system; glycine betaine ABC transporter substrate-binding protein 1091492..1092436 Acidiphilium cryptum JF-5 5161763 YP_001234124.1 CDS Acry_0988 NC_009484.1 1092499 1093359 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1092499..1093359 Acidiphilium cryptum JF-5 5161873 YP_001234125.1 CDS Acry_0989 NC_009484.1 1093356 1094609 D TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; glycine betaine/L-proline ABC transporter ATPase 1093356..1094609 Acidiphilium cryptum JF-5 5161874 YP_001234126.1 CDS Acry_0990 NC_009484.1 1094624 1096087 D catalyzes the formation of betaine from betaine aldehyde; betaine aldehyde dehydrogenase 1094624..1096087 Acidiphilium cryptum JF-5 5162290 YP_001234127.1 CDS Acry_0991 NC_009484.1 1096102 1097760 D TIGRFAM: choline dehydrogenase; PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; choline dehydrogenase 1096102..1097760 Acidiphilium cryptum JF-5 5161606 YP_001234128.1 CDS Acry_0992 NC_009484.1 1097884 1099137 D TIGRFAM: sarcosine oxidase, beta subunit family; PFAM: FAD dependent oxidoreductase; sarcosine oxidase subunit beta 1097884..1099137 Acidiphilium cryptum JF-5 5161607 YP_001234129.1 CDS Acry_0993 NC_009484.1 1099149 1099403 D PFAM: Sarcosine oxidase, delta subunit, heterotetrameric; sarcosine oxidase subunit delta 1099149..1099403 Acidiphilium cryptum JF-5 5161796 YP_001234130.1 CDS Acry_0994 NC_009484.1 1099400 1102396 D TIGRFAM: sarcosine oxidase, alpha subunit family; PFAM: glucose-inhibited division protein A; glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein, C-terminal barrel; sarcosine oxidase subunit alpha 1099400..1102396 Acidiphilium cryptum JF-5 5161707 YP_001234131.1 CDS Acry_0995 NC_009484.1 1102389 1102949 D PFAM: Sarcosine oxidase, gamma subunit; sarcosine oxidase subunit gamma 1102389..1102949 Acidiphilium cryptum JF-5 5161708 YP_001234132.1 CDS Acry_0996 NC_009484.1 1103025 1104395 D TIGRFAM: L-serine dehydratase 1; PFAM: serine dehydratase alpha chain; serine dehydratase beta chain; L-serine dehydratase 1 1103025..1104395 Acidiphilium cryptum JF-5 5161583 YP_001234133.1 CDS Acry_0997 NC_009484.1 1104540 1105310 R PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein subunit beta complement(1104540..1105310) Acidiphilium cryptum JF-5 5161479 YP_001234134.1 CDS Acry_0998 NC_009484.1 1105307 1106383 R PFAM: electron transfer flavoprotein beta-subunit; electron transfer flavoprotein, alpha subunit; electron transfer flavoprotein subunit alpha complement(1105307..1106383) Acidiphilium cryptum JF-5 5161480 YP_001234135.1 CDS Acry_0999 NC_009484.1 1106380 1108227 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein complement(1106380..1108227) Acidiphilium cryptum JF-5 5159881 YP_001234136.1 CDS Acry_1000 NC_009484.1 1108227 1110263 R PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; UDP-glucose/GDP-mannose dehydrogenase; NADH:flavin oxidoreductase complement(1108227..1110263) Acidiphilium cryptum JF-5 5159559 YP_001234137.1 CDS Acry_1001 NC_009484.1 1110260 1111234 R PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator complement(1110260..1111234) Acidiphilium cryptum JF-5 5159560 YP_001234138.1 CDS Acry_1002 NC_009484.1 1111234 1112325 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit complement(1111234..1112325) Acidiphilium cryptum JF-5 5159743 YP_001234139.1 CDS Acry_1003 NC_009484.1 1112322 1113593 R PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein complement(1112322..1113593) Acidiphilium cryptum JF-5 5161187 YP_001234140.1 CDS Acry_1004 NC_009484.1 1113737 1114792 R PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator complement(1113737..1114792) Acidiphilium cryptum JF-5 5161188 YP_001234141.1 CDS Acry_1005 NC_009484.1 1114913 1116469 R PFAM: sulfatase; sulfatase complement(1114913..1116469) Acidiphilium cryptum JF-5 5161070 YP_001234142.1 CDS Acry_1006 NC_009484.1 1116554 1117507 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1116554..1117507 Acidiphilium cryptum JF-5 5161192 YP_001234143.1 CDS Acry_1007 NC_009484.1 1117476 1118225 R TIGRFAM: ubiquinone biosynthesis O-methyltransferase; PFAM: UbiE/COQ5 methyltransferase; methyltransferase small; NodS family protein; Methyltransferase type 11; Methyltransferase type 12; ubiquinone biosynthesis O-methyltransferase complement(1117476..1118225) Acidiphilium cryptum JF-5 5161193 YP_001234144.1 CDS Acry_1008 NC_009484.1 1118323 1119540 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP, in Bacillus, lysine sensitive; regulated by response to starvation.; aspartate kinase 1118323..1119540 Acidiphilium cryptum JF-5 5161118 YP_001234145.1 CDS Acry_1009 NC_009484.1 1119537 1120574 D PFAM: 2-nitropropane dioxygenase, NPD; 2-nitropropane dioxygenase 1119537..1120574 Acidiphilium cryptum JF-5 5161084 YP_001234146.1 CDS Acry_1010 NC_009484.1 1120552 1122819 D TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing enzyme; GAF domain protein; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; phosphoenolpyruvate-protein phosphotransferase PtsP 1120552..1122819 Acidiphilium cryptum JF-5 5161085 YP_001234147.1 CDS Acry_1011 NC_009484.1 1122940 1124250 D hypothetical protein 1122940..1124250 Acidiphilium cryptum JF-5 5161008 YP_001234148.1 CDS ispG NC_009484.1 1124273 1125397 D catalyzes the conversion of 2C-methyl-D-erythritol 2,4-cyclodiphosphate into 4-hydroxy-3-methyl-2-en-1-yl diphosphate; involved in isoprenoid synthesis; 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 1124273..1125397 Acidiphilium cryptum JF-5 5161022 YP_001234149.1 CDS hisS NC_009484.1 1125481 1126716 D catalyzes a two-step reaction, first charging a histidine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; class II aminoacyl-tRNA synthetase; forms homodimers; some organisms have a paralogous gene, hisZ, that is similar to hisS and produces a protein that performs the first step in histidine biosynthesis along with HisG; histidyl-tRNA synthetase 1125481..1126716 Acidiphilium cryptum JF-5 5161023 YP_001234150.1 CDS prfA NC_009484.1 1126729 1127787 D recognizes the termination signals UAG and UAA during protein translation a specificity which is dependent on amino acid residues residing in loops of the L-shaped tRNA-like molecule of RF1; this protein is similar to release factor 2; peptide chain release factor 1 1126729..1127787 Acidiphilium cryptum JF-5 5160850 YP_001234151.1 CDS Acry_1015 NC_009484.1 1127784 1128626 D TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 11; HemK family modification methylase 1127784..1128626 Acidiphilium cryptum JF-5 5160909 YP_001234152.1 CDS Acry_1016 NC_009484.1 1128867 1129298 D hypothetical protein 1128867..1129298 Acidiphilium cryptum JF-5 5160910 YP_001234153.1 CDS Acry_1017 NC_009484.1 1129329 1130018 R protein tyrosine/serine phosphatase complement(1129329..1130018) Acidiphilium cryptum JF-5 5160524 YP_001234154.1 CDS Acry_1018 NC_009484.1 1130048 1130536 D PFAM: CHAP domain containing protein; CHAP domain-containing protein 1130048..1130536 Acidiphilium cryptum JF-5 5160776 YP_001234155.1 CDS Acry_1019 NC_009484.1 1130592 1132124 D TIGRFAM: integral membrane protein MviN; PFAM: multi antimicrobial extrusion protein MatE; virulence factor MVIN family protein; integral membrane protein MviN 1130592..1132124 Acidiphilium cryptum JF-5 5160673 YP_001234156.1 CDS Acry_1020 NC_009484.1 1132168 1133169 D TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase, class Ib; tryptophanyl-tRNA synthetase 1132168..1133169 Acidiphilium cryptum JF-5 5160674 YP_001234157.1 CDS Acry_1021 NC_009484.1 1133229 1134647 R PFAM: phosphoglucomutase/phosphomannomutase C terminal; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphomannomutase complement(1133229..1134647) Acidiphilium cryptum JF-5 5160521 YP_001234158.1 CDS Acry_1022 NC_009484.1 1134640 1135518 R TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; UTP-glucose-1-phosphate uridylyltransferase complement(1134640..1135518) Acidiphilium cryptum JF-5 5160262 YP_001234159.1 CDS Acry_1023 NC_009484.1 1135658 1136080 D PFAM: MaoC domain protein dehydratase; dehydratase 1135658..1136080 Acidiphilium cryptum JF-5 5160263 YP_001234160.1 CDS Acry_1024 NC_009484.1 1136088 1136990 R PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1136088..1136990) Acidiphilium cryptum JF-5 5160513 YP_001234161.1 CDS nusG NC_009484.1 1137080 1137610 R Modulates Rho-dependent transcription termination; transcription antitermination protein NusG complement(1137080..1137610) Acidiphilium cryptum JF-5 5160319 YP_001234162.1 CDS Acry_1026 NC_009484.1 1137620 1137814 R TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; preprotein translocase subunit SecE complement(1137620..1137814) Acidiphilium cryptum JF-5 5160320 YP_001234163.1 CDS Acry_1027 NC_009484.1 1138376 1138648 D hypothetical protein 1138376..1138648 Acidiphilium cryptum JF-5 5161636 YP_001234164.1 CDS Acry_1028 NC_009484.1 1138857 1139630 D hypothetical protein 1138857..1139630 Acidiphilium cryptum JF-5 5160461 YP_001234165.1 CDS Acry_1030 NC_009484.1 1140129 1140752 R hypothetical protein complement(1140129..1140752) Acidiphilium cryptum JF-5 5161074 YP_001234166.1 CDS Acry_1031 NC_009484.1 1141279 1144797 D TIGRFAM: outer membrane autotransporter barrel domain; autotransporter-associated beta strand repeat protein; PFAM: Autotransporter beta- domain protein; outer membrane autotransporter 1141279..1144797 Acidiphilium cryptum JF-5 5160317 YP_001234167.1 CDS Acry_1032 NC_009484.1 1145054 1146697 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 1145054..1146697 Acidiphilium cryptum JF-5 5161075 YP_001234168.1 CDS Acry_1033 NC_009484.1 1146712 1147737 D PFAM: Aldose 1-epimerase; aldose 1-epimerase 1146712..1147737 Acidiphilium cryptum JF-5 5159932 YP_001234169.1 CDS recA NC_009484.1 1147894 1148925 D catalyzes the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs; recombinase A 1147894..1148925 Acidiphilium cryptum JF-5 5159625 YP_001234170.1 CDS Acry_1035 NC_009484.1 1149274 1149576 D hypothetical protein 1149274..1149576 Acidiphilium cryptum JF-5 5159728 YP_001234171.1 CDS Acry_1036 NC_009484.1 1149580 1149993 R hypothetical protein complement(1149580..1149993) Acidiphilium cryptum JF-5 5159729 YP_001234172.1 CDS Acry_1037 NC_009484.1 1150314 1151054 R hypothetical protein complement(1150314..1151054) Acidiphilium cryptum JF-5 5160117 YP_001234173.1 CDS alaS NC_009484.1 1151079 1153715 D Catalyzes a two-step reaction, first charging an alanyl molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; alanyl-tRNA synthetase 1151079..1153715 Acidiphilium cryptum JF-5 5160168 YP_001234174.1 CDS Acry_1039 NC_009484.1 1153735 1157547 R TIGRFAM: delta-1-pyrroline-5-carboxylate dehydrogenase; PFAM: aldehyde dehydrogenase; CopG domain protein DNA-binding domain protein; Proline dehydrogenase; delta-1-pyrroline-5-carboxylate dehydrogenase complement(1153735..1157547) Acidiphilium cryptum JF-5 5160169 YP_001234175.1 CDS Acry_1040 NC_009484.1 1157682 1159583 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; KR; polysaccharide biosynthesis protein CapD 1157682..1159583 Acidiphilium cryptum JF-5 5159983 YP_001234176.1 CDS Acry_1041 NC_009484.1 1159593 1160747 D PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; DegT/DnrJ/EryC1/StrS aminotransferase 1159593..1160747 Acidiphilium cryptum JF-5 5160426 YP_001234177.1 CDS Acry_1042 NC_009484.1 1160734 1161684 D TIGRFAM: proline iminopeptidase; PFAM: alpha/beta hydrolase fold; proline iminopeptidase 1160734..1161684 Acidiphilium cryptum JF-5 5160427 YP_001234178.1 CDS Acry_1043 NC_009484.1 1161838 1162821 D TIGRFAM: TRAP transporter solute receptor, TAXI family; TRAP transporter solute receptor TAXI family protein 1161838..1162821 Acidiphilium cryptum JF-5 5159921 YP_001234179.1 CDS Acry_1044 NC_009484.1 1163022 1165598 D RND efflux transporter 1163022..1165598 Acidiphilium cryptum JF-5 5159823 YP_001234180.1 CDS Acry_1045 NC_009484.1 1165595 1165801 D related to arylsulfate sulfotransferase involved in siderophore biosynthesis-like protein; hypothetical protein 1165595..1165801 Acidiphilium cryptum JF-5 5159824 YP_001234181.1 CDS Acry_1046 NC_009484.1 1165863 1167716 D TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase; dihydroxy-acid dehydratase 1165863..1167716 Acidiphilium cryptum JF-5 5160237 YP_001234182.1 CDS Acry_1047 NC_009484.1 1167951 1169168 R PFAM: protein of unknown function DUF1228; major facilitator superfamily MFS_1; major facilitator transporter complement(1167951..1169168) Acidiphilium cryptum JF-5 5159495 YP_001234183.1 CDS Acry_1048 NC_009484.1 1169370 1170080 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(1169370..1170080) Acidiphilium cryptum JF-5 5159496 YP_001234184.1 CDS Acry_1049 NC_009484.1 1170077 1170841 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(1170077..1170841) Acidiphilium cryptum JF-5 5160209 YP_001234185.1 CDS Acry_1050 NC_009484.1 1170838 1171824 R PFAM: inner-membrane translocator; inner-membrane translocator complement(1170838..1171824) Acidiphilium cryptum JF-5 5160029 YP_001234186.1 CDS Acry_1051 NC_009484.1 1171821 1172690 R PFAM: inner-membrane translocator; inner-membrane translocator complement(1171821..1172690) Acidiphilium cryptum JF-5 5160030 YP_001234187.1 CDS Acry_1052 NC_009484.1 1172812 1174065 R PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(1172812..1174065) Acidiphilium cryptum JF-5 5159545 YP_001234188.1 CDS Acry_1053 NC_009484.1 1174273 1174977 R PFAM: putative methyltransferase; tRNA (guanine-N(7)-)-methyltransferase complement(1174273..1174977) Acidiphilium cryptum JF-5 5159986 YP_001234189.1 CDS Acry_1054 NC_009484.1 1174967 1176154 R catalyzes the formation of S-adenosylmethionine from methionine and ATP; methionine adenosyltransferase; S-adenosylmethionine synthetase complement(1174967..1176154) Acidiphilium cryptum JF-5 5159987 YP_001234190.1 CDS Acry_1055 NC_009484.1 1176276 1177019 R catalyzes the reduction of 2,3-dihydrodipicolinate to 2,3,4,5-tetrahydrodipicolinate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate reductase complement(1176276..1177019) Acidiphilium cryptum JF-5 5162498 YP_001234191.1 CDS Acry_1056 NC_009484.1 1177080 1177553 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1177080..1177553) Acidiphilium cryptum JF-5 5159697 YP_001234192.1 CDS Acry_1057 NC_009484.1 1177556 1179190 R PFAM: FAD dependent oxidoreductase; electron transfer flavoprotein-ubiquinone oxidoreductase; electron-transferring-flavoprotein dehydrogenase complement(1177556..1179190) Acidiphilium cryptum JF-5 5159636 YP_001234193.1 CDS Acry_1058 NC_009484.1 1179272 1180102 D TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; phage SPO1 DNA polymerase-like protein 1179272..1180102 Acidiphilium cryptum JF-5 5159637 YP_001234194.1 CDS Acry_1059 NC_009484.1 1180214 1182040 D PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase 1180214..1182040 Acidiphilium cryptum JF-5 5162174 YP_001234195.1 CDS Acry_1060 NC_009484.1 1182101 1183777 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 1182101..1183777 Acidiphilium cryptum JF-5 5160652 YP_001234196.1 CDS Acry_1061 NC_009484.1 1183832 1184887 R PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; oxidoreductase domain-containing protein complement(1183832..1184887) Acidiphilium cryptum JF-5 5160653 YP_001234197.1 CDS Acry_1062 NC_009484.1 1184972 1185958 R PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(1184972..1185958) Acidiphilium cryptum JF-5 5161439 YP_001234198.1 CDS Acry_1063 NC_009484.1 1186018 1187115 R PFAM: inner-membrane translocator; monosaccharide-transporting ATPase complement(1186018..1187115) Acidiphilium cryptum JF-5 5159491 YP_001234199.1 CDS Acry_1064 NC_009484.1 1187112 1188626 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(1187112..1188626) Acidiphilium cryptum JF-5 5159492 YP_001234200.1 CDS Acry_1065 NC_009484.1 1188623 1189396 R periplasmic lipoprotein-like protein complement(1188623..1189396) Acidiphilium cryptum JF-5 5161906 YP_001234201.1 CDS Acry_1066 NC_009484.1 1189581 1190336 D Transcriptional repressor of the nan operon that encodes proteins involved in sialic acid utilization; transcriptional regulator NanR 1189581..1190336 Acidiphilium cryptum JF-5 5161416 YP_001234202.1 CDS Acry_1067 NC_009484.1 1190417 1191682 D PFAM: ribulose bisphosphate carboxylase, large chain; RuBisCO-like protein 1190417..1191682 Acidiphilium cryptum JF-5 5161417 YP_001234203.1 CDS Acry_1068 NC_009484.1 1191679 1193070 D PFAM: type III effector Hrp-dependent outers; type III effector Hrp-dependent outer protein 1191679..1193070 Acidiphilium cryptum JF-5 5159843 YP_001234204.1 CDS Acry_1069 NC_009484.1 1193067 1193906 D hypothetical protein 1193067..1193906 Acidiphilium cryptum JF-5 5159960 YP_001234205.1 CDS Acry_1070 NC_009484.1 1193965 1195008 D ABC-type sugar transport system periplasmic component-like protein 1193965..1195008 Acidiphilium cryptum JF-5 5159961 YP_001234206.1 CDS Acry_1071 NC_009484.1 1195024 1197480 D PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; inner-membrane translocator 1195024..1197480 Acidiphilium cryptum JF-5 5159688 YP_001234207.1 CDS Acry_1072 NC_009484.1 1197477 1198430 D PFAM: inner-membrane translocator; inner-membrane translocator 1197477..1198430 Acidiphilium cryptum JF-5 5159839 YP_001234208.1 CDS Acry_1073 NC_009484.1 1198499 1199245 D PFAM: NADPH-dependent FMN reductase; NADPH-dependent FMN reductase 1198499..1199245 Acidiphilium cryptum JF-5 5159840 YP_001234209.1 CDS Acry_1074 NC_009484.1 1199256 1200191 D PFAM: phosphate transporter; phosphate transporter 1199256..1200191 Acidiphilium cryptum JF-5 5162502 YP_001234210.1 CDS Acry_1076 NC_009484.1 1201026 1202162 D PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel MscS 1201026..1202162 Acidiphilium cryptum JF-5 5161627 YP_001234211.1 CDS Acry_1077 NC_009484.1 1202181 1202759 R PFAM: Nitrile hydratase alpha chain; nitrile hydratase complement(1202181..1202759) Acidiphilium cryptum JF-5 5161122 YP_001234212.1 CDS Acry_1078 NC_009484.1 1202756 1203049 R hypothetical protein complement(1202756..1203049) Acidiphilium cryptum JF-5 5162591 YP_001234213.1 CDS Acry_1079 NC_009484.1 1203043 1203369 R hypothetical protein complement(1203043..1203369) Acidiphilium cryptum JF-5 5162520 YP_001234214.1 CDS Acry_1080 NC_009484.1 1203515 1204942 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter complement(1203515..1204942) Acidiphilium cryptum JF-5 5162521 YP_001234215.1 CDS Acry_1081 NC_009484.1 1205141 1206403 D TIGRFAM: fumarylacetoacetase; PFAM: fumarylacetoacetate (FAA) hydrolase; fumarylacetoacetase 1205141..1206403 Acidiphilium cryptum JF-5 5161650 YP_001234216.1 CDS Acry_1082 NC_009484.1 1206464 1207405 R hypothetical protein complement(1206464..1207405) Acidiphilium cryptum JF-5 5162125 YP_001234217.1 CDS Acry_1083 NC_009484.1 1207440 1208072 R hypothetical protein complement(1207440..1208072) Acidiphilium cryptum JF-5 5162126 YP_001234218.1 CDS Acry_1084 NC_009484.1 1208098 1208664 R hypothetical protein complement(1208098..1208664) Acidiphilium cryptum JF-5 5162549 YP_001234219.1 CDS Acry_1085 NC_009484.1 1208787 1210400 D hypothetical protein 1208787..1210400 Acidiphilium cryptum JF-5 5162407 YP_001234220.1 CDS Acry_1086 NC_009484.1 1210422 1211339 R PFAM: Alpha/beta hydrolase fold-3 domain protein; alpha/beta hydrolase domain-containing protein complement(1210422..1211339) Acidiphilium cryptum JF-5 5162408 YP_001234221.1 CDS Acry_1087 NC_009484.1 1211351 1212211 R PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(1211351..1212211) Acidiphilium cryptum JF-5 5160415 YP_001234222.1 CDS Acry_1088 NC_009484.1 1212236 1213735 R flavoprotein involved in K+ transport-like protein complement(1212236..1213735) Acidiphilium cryptum JF-5 5162453 YP_001234223.1 CDS Acry_1089 NC_009484.1 1213871 1214554 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 1213871..1214554 Acidiphilium cryptum JF-5 5162454 YP_001234224.1 CDS Acry_1090 NC_009484.1 1214603 1216198 R Catalyzes the first step in the glyoxalate cycle, which converts lipids to carbohydrates; isocitrate lyase complement(1214603..1216198) Acidiphilium cryptum JF-5 5161276 YP_001234225.1 CDS Acry_1091 NC_009484.1 1216395 1217069 R hypothetical protein complement(1216395..1217069) Acidiphilium cryptum JF-5 5161502 YP_001234226.1 CDS Acry_1092 NC_009484.1 1217059 1217622 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor complement(1217059..1217622) Acidiphilium cryptum JF-5 5161503 YP_001234227.1 CDS Acry_1093 NC_009484.1 1217696 1218064 R hypothetical protein complement(1217696..1218064) Acidiphilium cryptum JF-5 5161856 YP_001234228.1 CDS Acry_1094 NC_009484.1 1218064 1218678 R Heme/copper-type cytochrome/quinol oxidase subunit 3-like protein complement(1218064..1218678) Acidiphilium cryptum JF-5 5162060 YP_001234229.1 CDS Acry_1095 NC_009484.1 1218675 1220744 R PFAM: cytochrome c oxidase, subunit I; cytochrome-c oxidase complement(1218675..1220744) Acidiphilium cryptum JF-5 5160226 YP_001234230.1 CDS Acry_1096 NC_009484.1 1220770 1221774 R PFAM: cytochrome c oxidase, subunit II; cytochrome c oxidase subunit II complement(1220770..1221774) Acidiphilium cryptum JF-5 5160227 YP_001234231.1 CDS Acry_1097 NC_009484.1 1222151 1222963 D hypothetical protein 1222151..1222963 Acidiphilium cryptum JF-5 5159713 YP_001234232.1 CDS Acry_1098 NC_009484.1 1222977 1223987 R PFAM: Bile acid:sodium symporter; bile acid:sodium symporter complement(1222977..1223987) Acidiphilium cryptum JF-5 5160249 YP_001234233.1 CDS Acry_1099 NC_009484.1 1224048 1224962 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1224048..1224962 Acidiphilium cryptum JF-5 5160250 YP_001234234.1 CDS Acry_1100 NC_009484.1 1224990 1225931 R PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase complement(1224990..1225931) Acidiphilium cryptum JF-5 5161298 YP_001234235.1 CDS Acry_1101 NC_009484.1 1226267 1226578 R hypothetical protein complement(1226267..1226578) Acidiphilium cryptum JF-5 5160351 YP_001234236.1 CDS Acry_1104 NC_009484.1 1229056 1229715 D PFAM: Resolvase, N-terminal domain; resolvase domain-containing protein 1229056..1229715 Acidiphilium cryptum JF-5 5161689 YP_001234237.1 CDS Acry_1105 NC_009484.1 1229654 1232644 D PFAM: transposase Tn3 family protein; transposase Tn3 family protein 1229654..1232644 Acidiphilium cryptum JF-5 5160841 YP_001234238.1 CDS Acry_1107 NC_009484.1 1233013 1233444 R PFAM: CBS domain containing protein; signal-transduction protein complement(1233013..1233444) Acidiphilium cryptum JF-5 5161690 YP_001234239.1 CDS Acry_1108 NC_009484.1 1233728 1235188 R TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N complement(1233728..1235188) Acidiphilium cryptum JF-5 5160991 YP_001234240.1 CDS Acry_1109 NC_009484.1 1235185 1236702 R TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M complement(1235185..1236702) Acidiphilium cryptum JF-5 5160916 YP_001234241.1 CDS Acry_1110 NC_009484.1 1236699 1238555 R TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH-Ubiquinone oxidoreductase (complex I), chain 5/L domain protein; NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit L complement(1236699..1238555) Acidiphilium cryptum JF-5 5160066 YP_001234242.1 CDS Acry_1111 NC_009484.1 1238560 1238868 R PFAM: NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase subunit 4L complement(1238560..1238868) Acidiphilium cryptum JF-5 5160067 YP_001234243.1 CDS Acry_1112 NC_009484.1 1238873 1239373 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 6; NADH-ubiquinone/plastoquinone oxidoreductase subunit 6 complement(1238873..1239373) Acidiphilium cryptum JF-5 5161034 YP_001234244.1 CDS Acry_1113 NC_009484.1 1239405 1239917 R TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; NADH-quinone oxidoreductase subunit I complement(1239405..1239917) Acidiphilium cryptum JF-5 5160913 YP_001234245.1 CDS Acry_1114 NC_009484.1 1239931 1240902 R Catalyzes the transfer of electrons from NADH to quinone; NADH dehydrogenase subunit H complement(1239931..1240902) Acidiphilium cryptum JF-5 5160914 YP_001234246.1 CDS Acry_1115 NC_009484.1 1240899 1243607 R TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: ferredoxin; molybdopterin oxidoreductase Fe4S4 region; NADH-quinone oxidoreductase subunit G complement(1240899..1243607) Acidiphilium cryptum JF-5 5160690 YP_001234247.1 CDS Acry_1116 NC_009484.1 1243604 1244908 R PFAM: Respiratory-chain NADH dehydrogenase domain, 51 kDa subunit; NADH dehydrogenase (quinone) complement(1243604..1244908) Acidiphilium cryptum JF-5 5162599 YP_001234248.1 CDS Acry_1117 NC_009484.1 1244908 1245405 R TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone), 24 kDa subunit; NADH-quinone oxidoreductase subunit E complement(1244908..1245405) Acidiphilium cryptum JF-5 5162600 YP_001234249.1 CDS Acry_1118 NC_009484.1 1245392 1247170 R NuoCD; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain; subunits NuoCD, E, F, and G constitute the peripheral sector of the complex; in Escherichia coli this gene encodes a fusion protein of NuoC and NuoD that are found separate in other organisms; bifunctional NADH:ubiquinone oxidoreductase subunit C/D complement(1245392..1247170) Acidiphilium cryptum JF-5 5162138 YP_001234250.1 CDS Acry_1119 NC_009484.1 1247181 1247876 R TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH-quinone oxidoreductase subunit B complement(1247181..1247876) Acidiphilium cryptum JF-5 5162496 YP_001234251.1 CDS Acry_1120 NC_009484.1 1247881 1248279 R PFAM: NADH-ubiquinone/plastoquinone oxidoreductase, chain 3; NADH-ubiquinone/plastoquinone oxidoreductase subunit 3 complement(1247881..1248279) Acidiphilium cryptum JF-5 5162497 YP_001234252.1 CDS Acry_1121 NC_009484.1 1248465 1251122 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; E1-E2 ATPase-associated domain protein; P-type HAD superfamily ATPase complement(1248465..1251122) Acidiphilium cryptum JF-5 5161327 YP_001234253.1 CDS Acry_1122 NC_009484.1 1251109 1252125 R PFAM: sodium/calcium exchanger membrane region; sodium/calcium exchanger membrane region complement(1251109..1252125) Acidiphilium cryptum JF-5 5159518 YP_001234254.1 CDS Acry_1123 NC_009484.1 1252318 1253367 R PFAM: Semialdehyde dehydrogenase, NAD - binding; oxidoreductase domain protein; Oxidoreductase, C-terminal domain; homoserine dehydrogenase, NAD-binding; oxidoreductase domain-containing protein complement(1252318..1253367) Acidiphilium cryptum JF-5 5159519 YP_001234255.1 CDS Acry_1124 NC_009484.1 1253445 1254461 R PFAM: molybdopterin dehydrogenase, FAD-binding; CO dehydrogenase flavoprotein domain protein; molybdopterin dehydrogenase complement(1253445..1254461) Acidiphilium cryptum JF-5 5162485 YP_001234256.1 CDS Acry_1125 NC_009484.1 1254458 1256722 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase complement(1254458..1256722) Acidiphilium cryptum JF-5 5159810 YP_001234257.1 CDS Acry_1126 NC_009484.1 1256785 1257591 D hypothetical protein 1256785..1257591 Acidiphilium cryptum JF-5 5159811 YP_001234258.1 CDS Acry_1127 NC_009484.1 1257588 1257866 D PFAM: protein of unknown function DUF156; hypothetical protein 1257588..1257866 Acidiphilium cryptum JF-5 5160585 YP_001234259.1 CDS Acry_1128 NC_009484.1 1257875 1259173 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 1257875..1259173 Acidiphilium cryptum JF-5 5162518 YP_001234260.1 CDS Acry_1129 NC_009484.1 1259205 1259600 R PFAM: regulatory protein, MerR; MerR family transcriptional regulator complement(1259205..1259600) Acidiphilium cryptum JF-5 5162519 YP_001234261.1 CDS Acry_1130 NC_009484.1 1259679 1260386 D Co/Zn/Cd cation transporter-like protein 1259679..1260386 Acidiphilium cryptum JF-5 5162278 YP_001234262.1 CDS Acry_1131 NC_009484.1 1260419 1261393 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 1260419..1261393 Acidiphilium cryptum JF-5 5162544 YP_001234263.1 CDS Acry_1132 NC_009484.1 1261415 1262929 R PFAM: multicopper oxidase, type 1; multicopper oxidase, type 2; multicopper oxidase, type 3; multicopper oxidase, type 2 complement(1261415..1262929) Acidiphilium cryptum JF-5 5162545 YP_001234264.1 CDS Acry_1133 NC_009484.1 1262999 1263322 R hypothetical protein complement(1262999..1263322) Acidiphilium cryptum JF-5 5162422 YP_001234265.1 CDS Acry_1134 NC_009484.1 1263582 1264757 D PFAM: acyltransferase 3; acyltransferase 3 1263582..1264757 Acidiphilium cryptum JF-5 5162178 YP_001234266.1 CDS Acry_1135 NC_009484.1 1265131 1265955 D PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 1265131..1265955 Acidiphilium cryptum JF-5 5161742 YP_001234267.1 CDS Acry_1136 NC_009484.1 1265971 1266723 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 1265971..1266723 Acidiphilium cryptum JF-5 5161743 YP_001234268.1 CDS Acry_1137 NC_009484.1 1266723 1267487 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1266723..1267487 Acidiphilium cryptum JF-5 5160556 YP_001234269.1 CDS Acry_1138 NC_009484.1 1267534 1268520 R PFAM: inner-membrane translocator; inner-membrane translocator complement(1267534..1268520) Acidiphilium cryptum JF-5 5162414 YP_001234270.1 CDS Acry_1139 NC_009484.1 1268517 1269521 R PFAM: inner-membrane translocator; monosaccharide-transporting ATPase complement(1268517..1269521) Acidiphilium cryptum JF-5 5162415 YP_001234271.1 CDS Acry_1140 NC_009484.1 1269508 1271082 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(1269508..1271082) Acidiphilium cryptum JF-5 5161408 YP_001234272.1 CDS Acry_1141 NC_009484.1 1271108 1272199 R ABC-type sugar transport system periplasmic component-like protein complement(1271108..1272199) Acidiphilium cryptum JF-5 5162291 YP_001234273.1 CDS Acry_1142 NC_009484.1 1272301 1273350 R TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase complement(1272301..1273350) Acidiphilium cryptum JF-5 5162292 YP_001234274.1 CDS Acry_1143 NC_009484.1 1273484 1274608 R hypothetical protein complement(1273484..1274608) Acidiphilium cryptum JF-5 5162068 YP_001234275.1 CDS Acry_1144 NC_009484.1 1274605 1275438 R PFAM: regulatory protein, DeoR; DeoR family transcriptional regulator complement(1274605..1275438) Acidiphilium cryptum JF-5 5161928 YP_001234276.1 CDS Acry_1145 NC_009484.1 1275490 1276470 R PFAM: helix-turn-helix- domain containing protein, AraC type; ThiJ/PfpI domain protein; AraC family transcriptional regulator complement(1275490..1276470) Acidiphilium cryptum JF-5 5161929 YP_001234277.1 CDS Acry_1146 NC_009484.1 1276580 1277221 D PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; metal-dependent phosphohydrolase 1276580..1277221 Acidiphilium cryptum JF-5 5160109 YP_001234278.1 CDS Acry_1147 NC_009484.1 1277263 1278702 D PFAM: Catalase domain protein; catalase 1277263..1278702 Acidiphilium cryptum JF-5 5160075 YP_001234279.1 CDS Acry_1148 NC_009484.1 1278571 1280031 R PFAM: amidohydrolase; Amidohydrolase 3; amidohydrolase complement(1278571..1280031) Acidiphilium cryptum JF-5 5160076 YP_001234280.1 CDS Acry_1149 NC_009484.1 1280041 1281429 R PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease complement(1280041..1281429) Acidiphilium cryptum JF-5 5161507 YP_001234281.1 CDS Acry_1150 NC_009484.1 1281469 1282011 R hypothetical protein complement(1281469..1282011) Acidiphilium cryptum JF-5 5161569 YP_001234282.1 CDS Acry_1151 NC_009484.1 1282008 1283207 R PFAM: protein of unknown function DUF989; hypothetical protein complement(1282008..1283207) Acidiphilium cryptum JF-5 5161570 YP_001234283.1 CDS Acry_1152 NC_009484.1 1283213 1283563 R PFAM: Transthyretin; transthyretin complement(1283213..1283563) Acidiphilium cryptum JF-5 5162451 YP_001234284.1 CDS Acry_1153 NC_009484.1 1283652 1284524 R PFAM: protein of unknown function DUF182; hypothetical protein complement(1283652..1284524) Acidiphilium cryptum JF-5 5162448 YP_001234285.1 CDS Acry_1154 NC_009484.1 1284521 1286959 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; xanthine dehydrogenase complement(1284521..1286959) Acidiphilium cryptum JF-5 5162449 YP_001234286.1 CDS Acry_1155 NC_009484.1 1286956 1288512 R PFAM: molybdopterin dehydrogenase, FAD-binding; [2Fe-2S]-binding domain protein; CO dehydrogenase flavoprotein domain protein; molybdopterin dehydrogenase complement(1286956..1288512) Acidiphilium cryptum JF-5 5160963 YP_001234287.1 CDS Acry_1156 NC_009484.1 1288607 1289527 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(1288607..1289527) Acidiphilium cryptum JF-5 5162346 YP_001234288.1 CDS Acry_1157 NC_009484.1 1289682 1291466 D catalyzes the formation of 2-hydroxy-3-oxopropanoate (tartronate semialdehyde) from two molecules of glyoxylate; glyoxylate carboligase 1289682..1291466 Acidiphilium cryptum JF-5 5162347 YP_001234289.1 CDS Acry_1158 NC_009484.1 1291486 1292292 D PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase 1291486..1292292 Acidiphilium cryptum JF-5 5162589 YP_001234290.1 CDS Acry_1159 NC_009484.1 1292289 1293167 D TIGRFAM: 2-hydroxy-3-oxopropionate reductase; PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase 1292289..1293167 Acidiphilium cryptum JF-5 5162261 YP_001234291.1 CDS Acry_1160 NC_009484.1 1293167 1294486 D PFAM: MOFRL domain protein; hydroxypyruvate reductase 1293167..1294486 Acidiphilium cryptum JF-5 5162262 YP_001234292.1 CDS Acry_1161 NC_009484.1 1294492 1295787 D TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein; amidase 1294492..1295787 Acidiphilium cryptum JF-5 5162362 YP_001234293.1 CDS Acry_1162 NC_009484.1 1295790 1297034 D PFAM: peptidase M20; peptidase dimerisation domain protein; peptidase M20 1295790..1297034 Acidiphilium cryptum JF-5 5162275 YP_001234294.1 CDS Acry_1163 NC_009484.1 1297072 1297995 D PFAM: polysaccharide deacetylase; chitin deacetylase 1297072..1297995 Acidiphilium cryptum JF-5 5162276 YP_001234295.1 CDS Acry_1164 NC_009484.1 1298015 1298938 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1298015..1298938 Acidiphilium cryptum JF-5 5162406 YP_001234296.1 CDS Acry_1165 NC_009484.1 1298942 1299280 R hypothetical protein complement(1298942..1299280) Acidiphilium cryptum JF-5 5161713 YP_001234297.1 CDS Acry_1166 NC_009484.1 1299633 1302785 R PFAM: Collagen triple helix repeat; triple helix repeat-containing collagen complement(1299633..1302785) Acidiphilium cryptum JF-5 5161714 YP_001234298.1 CDS Acry_1167 NC_009484.1 1302857 1303126 R hypothetical protein complement(1302857..1303126) Acidiphilium cryptum JF-5 5162528 YP_001234299.1 CDS Acry_1168 NC_009484.1 1303307 1303813 D hypothetical protein 1303307..1303813 Acidiphilium cryptum JF-5 5160438 YP_001234300.1 CDS Acry_1169 NC_009484.1 1304227 1304487 D hypothetical protein 1304227..1304487 Acidiphilium cryptum JF-5 5160439 YP_001234301.1 CDS Acry_1170 NC_009484.1 1304664 1305902 D PFAM: phage integrase family protein; phage integrase family protein 1304664..1305902 Acidiphilium cryptum JF-5 5160745 YP_001234302.1 CDS Acry_1171 NC_009484.1 1306311 1308464 D hypothetical protein 1306311..1308464 Acidiphilium cryptum JF-5 5162409 YP_001234303.1 CDS Acry_1172 NC_009484.1 1308565 1309326 D hypothetical protein 1308565..1309326 Acidiphilium cryptum JF-5 5161613 YP_001234304.1 CDS Acry_1173 NC_009484.1 1309319 1309714 D hypothetical protein 1309319..1309714 Acidiphilium cryptum JF-5 5161614 YP_001234305.1 CDS Acry_1174 NC_009484.1 1309852 1310742 D hypothetical protein 1309852..1310742 Acidiphilium cryptum JF-5 5162341 YP_001234306.1 CDS Acry_1175 NC_009484.1 1310946 1311572 D hypothetical protein 1310946..1311572 Acidiphilium cryptum JF-5 5161692 YP_001234307.1 CDS Acry_1176 NC_009484.1 1311716 1312183 D hypothetical protein 1311716..1312183 Acidiphilium cryptum JF-5 5161693 YP_001234308.1 CDS Acry_1177 NC_009484.1 1312752 1313306 R PFAM: peptidyl-prolyl cis-trans isomerase, cyclophilin type; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(1312752..1313306) Acidiphilium cryptum JF-5 5161775 YP_001234309.1 CDS Acry_1178 NC_009484.1 1313303 1313812 R TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase complement(1313303..1313812) Acidiphilium cryptum JF-5 5161655 YP_001234310.1 CDS Acry_1179 NC_009484.1 1313805 1316537 R negatively supercoils closed circular double-stranded DNA; DNA gyrase subunit A complement(1313805..1316537) Acidiphilium cryptum JF-5 5161656 YP_001234311.1 CDS Acry_1180 NC_009484.1 1316583 1317293 R phytoene/squalene synthetase-like protein complement(1316583..1317293) Acidiphilium cryptum JF-5 5162602 YP_001234312.1 CDS Acry_1181 NC_009484.1 1317411 1318016 D PFAM: manganese and iron superoxide dismutase; superoxide dismutase 1317411..1318016 Acidiphilium cryptum JF-5 5161826 YP_001234313.1 CDS Acry_1182 NC_009484.1 1318086 1318445 R TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; preprotein translocase subunit YajC complement(1318086..1318445) Acidiphilium cryptum JF-5 5161827 YP_001234314.1 CDS Acry_1183 NC_009484.1 1318556 1319425 D PFAM: protein of unknown function DUF815; hypothetical protein 1318556..1319425 Acidiphilium cryptum JF-5 5162069 YP_001234315.1 CDS Acry_1184 NC_009484.1 1319492 1320241 D TIGRFAM: TonB family protein; TonB family protein 1319492..1320241 Acidiphilium cryptum JF-5 5160812 YP_001234316.1 CDS Acry_1185 NC_009484.1 1320320 1321918 D PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein 1320320..1321918 Acidiphilium cryptum JF-5 5160813 YP_001234317.1 CDS Acry_1186 NC_009484.1 1321924 1322868 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1321924..1322868 Acidiphilium cryptum JF-5 5162461 YP_001234318.1 CDS Acry_1187 NC_009484.1 1322865 1323728 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 1322865..1323728 Acidiphilium cryptum JF-5 5161082 YP_001234319.1 CDS Acry_1188 NC_009484.1 1323725 1325557 D TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase 1323725..1325557 Acidiphilium cryptum JF-5 5161083 YP_001234320.1 CDS Acry_1189 NC_009484.1 1325554 1326225 D PFAM: MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1325554..1326225 Acidiphilium cryptum JF-5 5161062 YP_001234321.1 CDS Acry_1190 NC_009484.1 1326229 1326642 D PFAM: Biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1326229..1326642 Acidiphilium cryptum JF-5 5162567 YP_001234322.1 CDS xerC NC_009484.1 1326608 1327549 D site-specific tyrosine recombinase which cuts and rejoins DNA molecules; binds cooperatively to specific DNA consensus sites; forms a heterotetrameric complex with XerC; XerCD exhibit similar sequences; essential to convert chromosome dimers to monomers during cell division and functions during plasmid segregation; cell division protein FtsK may regulate the XerCD complex; enzyme from Streptococcus group has unusual active site motifs; site-specific tyrosine recombinase XerC 1326608..1327549 Acidiphilium cryptum JF-5 5162568 YP_001234323.1 CDS Acry_1192 NC_009484.1 1327552 1328085 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(1327552..1328085) Acidiphilium cryptum JF-5 5162476 YP_001234324.1 CDS Acry_1193 NC_009484.1 1328082 1329362 R PFAM: Fmu (Sun) domain protein; Fmu (Sun) domain-containing protein complement(1328082..1329362) Acidiphilium cryptum JF-5 5162494 YP_001234325.1 CDS Acry_1194 NC_009484.1 1329366 1330865 R TIGRFAM: inosine-5'-monophosphate dehydrogenase; PFAM: CBS domain containing protein; IMP dehydrogenase/GMP reductase; inosine-5'-monophosphate dehydrogenase complement(1329366..1330865) Acidiphilium cryptum JF-5 5162495 YP_001234326.1 CDS Acry_1195 NC_009484.1 1331421 1333379 D PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1331421..1333379 Acidiphilium cryptum JF-5 5162230 YP_001234327.1 CDS Acry_1196 NC_009484.1 1333387 1334004 R PFAM: protein of unknown function DUF1211; hypothetical protein complement(1333387..1334004) Acidiphilium cryptum JF-5 5162129 YP_001234328.1 CDS Acry_1197 NC_009484.1 1334037 1334999 R hypothetical protein complement(1334037..1334999) Acidiphilium cryptum JF-5 5162130 YP_001234329.1 CDS Acry_1198 NC_009484.1 1335010 1335915 R PFAM: Polyprenyl synthetase; polyprenyl synthetase complement(1335010..1335915) Acidiphilium cryptum JF-5 5160875 YP_001234330.1 CDS Acry_1199 NC_009484.1 1335912 1336178 R TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII, small subunit; exodeoxyribonuclease VII small subunit complement(1335912..1336178) Acidiphilium cryptum JF-5 5162492 YP_001234331.1 CDS Acry_1200 NC_009484.1 1336217 1337146 R PFAM: histone deacetylase superfamily; histone deacetylase superfamily protein complement(1336217..1337146) Acidiphilium cryptum JF-5 5162493 YP_001234332.1 CDS Acry_1201 NC_009484.1 1337175 1337453 R PFAM: SirA family protein; SirA family protein complement(1337175..1337453) Acidiphilium cryptum JF-5 5159686 YP_001234333.1 CDS Acry_1202 NC_009484.1 1337539 1338435 D PFAM: ROK family protein; ROK family protein 1337539..1338435 Acidiphilium cryptum JF-5 5162202 YP_001234334.1 CDS Acry_1203 NC_009484.1 1338445 1339215 R TIGRFAM: 3'(2'),5'-bisphosphate nucleotidase; PFAM: inositol monophosphatase; 3'(2'),5'-bisphosphate nucleotidase complement(1338445..1339215) Acidiphilium cryptum JF-5 5162203 YP_001234335.1 CDS Acry_1204 NC_009484.1 1339308 1340852 D catalyzes the removal of N-terminal amino acids preferably leucine from various peptides; leucyl aminopeptidase 1339308..1340852 Acidiphilium cryptum JF-5 5162475 YP_001234336.1 CDS Acry_1205 NC_009484.1 1340917 1341933 D capsular polysaccharide biosynthesis protein-like protein 1340917..1341933 Acidiphilium cryptum JF-5 5161530 YP_001234337.1 CDS Acry_1206 NC_009484.1 1341924 1342451 R PFAM: Uncharacterized protein UPF0114; hypothetical protein complement(1341924..1342451) Acidiphilium cryptum JF-5 5161531 YP_001234338.1 CDS Acry_1207 NC_009484.1 1342448 1344514 R PFAM: protein of unknown function DUF893, YccS/YhfK; hypothetical protein complement(1342448..1344514) Acidiphilium cryptum JF-5 5160662 YP_001234339.1 CDS Acry_1208 NC_009484.1 1344501 1346735 R decatenates newly replicated chromosomal DNA and relaxes positive and negative DNA supercoiling; DNA topoisomerase IV subunit A complement(1344501..1346735) Acidiphilium cryptum JF-5 5159648 YP_001234340.1 CDS Acry_1209 NC_009484.1 1346725 1347480 R TIGRFAM: DNA repair protein RecO; DNA repair protein RecO complement(1346725..1347480) Acidiphilium cryptum JF-5 5159649 YP_001234341.1 CDS Acry_1210 NC_009484.1 1347493 1348716 R hypothetical protein complement(1347493..1348716) Acidiphilium cryptum JF-5 5160026 YP_001234342.1 CDS Acry_1211 NC_009484.1 1348720 1349874 R TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(1348720..1349874) Acidiphilium cryptum JF-5 5159725 YP_001234343.1 CDS Acry_1213 NC_009484.1 1350433 1350690 R hypothetical protein complement(1350433..1350690) Acidiphilium cryptum JF-5 5160015 YP_001234344.1 CDS Acry_1214 NC_009484.1 1350916 1351971 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; dTDP-glucose 4,6-dehydratase 1350916..1351971 Acidiphilium cryptum JF-5 5159480 YP_001234345.1 CDS Acry_1215 NC_009484.1 1351968 1352849 D TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; glucose-1-phosphate thymidylyltransferase 1351968..1352849 Acidiphilium cryptum JF-5 5159893 YP_001234346.1 CDS Acry_1216 NC_009484.1 1352846 1353400 D TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 3,5-epimerase related; dTDP-4-dehydrorhamnose 3,5-epimerase 1352846..1353400 Acidiphilium cryptum JF-5 5159894 YP_001234347.1 CDS Acry_1217 NC_009484.1 1353402 1354307 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; dTDP-4-dehydrorhamnose reductase 1353402..1354307 Acidiphilium cryptum JF-5 5159916 YP_001234348.1 CDS Acry_1218 NC_009484.1 1354304 1355209 D PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 1354304..1355209 Acidiphilium cryptum JF-5 5159553 YP_001234349.1 CDS Acry_1219 NC_009484.1 1355222 1357009 R PFAM: ABC transporter related; SbmABacA family protein; ABC transporter domain protein; SMART: AAA ATPase; ABC transporter complement(1355222..1357009) Acidiphilium cryptum JF-5 5159554 YP_001234350.1 CDS Acry_1220 NC_009484.1 1357253 1359286 D TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; transketolase 1357253..1359286 Acidiphilium cryptum JF-5 5159933 YP_001234351.1 CDS Acry_1221 NC_009484.1 1359351 1360364 D TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 1359351..1360364 Acidiphilium cryptum JF-5 5160113 YP_001234352.1 CDS pgk NC_009484.1 1360364 1361557 D Converts 3-phospho-D-glycerate to 3-phospho-D-glyceroyl phosphate during the glycolysis pathway; phosphoglycerate kinase 1360364..1361557 Acidiphilium cryptum JF-5 5160114 YP_001234353.1 CDS Acry_1223 NC_009484.1 1361619 1363070 R PFAM: peptidase U62, modulator of DNA gyrase; C69 family peptidase complement(1361619..1363070) Acidiphilium cryptum JF-5 5160649 YP_001234354.1 CDS Acry_1224 NC_009484.1 1363067 1364143 R PFAM: cytochrome oxidase assembly; cytochrome oxidase assembly complement(1363067..1364143) Acidiphilium cryptum JF-5 5159962 YP_001234355.1 CDS Acry_1225 NC_009484.1 1364140 1365243 R PFAM: cytochrome oxidase assembly; cytochrome oxidase assembly complement(1364140..1365243) Acidiphilium cryptum JF-5 5159963 YP_001234356.1 CDS rho NC_009484.1 1365487 1366761 D An RNA-DNA helicase that actively releases nascent mRNAs from paused transcription complexes; transcription termination factor Rho 1365487..1366761 Acidiphilium cryptum JF-5 5161357 YP_001234357.1 CDS Acry_1227 NC_009484.1 1366764 1367387 D PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 1366764..1367387 Acidiphilium cryptum JF-5 5161933 YP_001234358.1 CDS Acry_1228 NC_009484.1 1367464 1368771 D catalyzes the formation of L-homocysteine from S-adenosyl-L-homocysteine; S-adenosyl-L-homocysteine hydrolase 1367464..1368771 Acidiphilium cryptum JF-5 5161934 YP_001234359.1 CDS Acry_1229 NC_009484.1 1368782 1369180 D hypothetical protein 1368782..1369180 Acidiphilium cryptum JF-5 5160342 YP_001234360.1 CDS Acry_1230 NC_009484.1 1369270 1370475 R TIGRFAM: molybdenum cofactor synthesis domain; PFAM: molybdopterin binding domain; MoeA domain protein, domain I and II; MoeA domain protein, domain IV; molybdenum cofactor synthesis domain-containing protein complement(1369270..1370475) Acidiphilium cryptum JF-5 5161382 YP_001234361.1 CDS Acry_1231 NC_009484.1 1370479 1370955 R TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; molybdenum cofactor biosynthesis protein C complement(1370479..1370955) Acidiphilium cryptum JF-5 5161383 YP_001234362.1 CDS trpC NC_009484.1 1370952 1371764 R involved in tryptophan biosynthesis; amino acid biosynthesis; converts 1-(2-carboxyphenylamino)-1-deoxy-D-ribulose 5-phosphate to C(1)-(3-indolyl)-glycerol 3-phosphate and carbon dioxide and water; indole-3-glycerol-phosphate synthase complement(1370952..1371764) Acidiphilium cryptum JF-5 5162226 YP_001234363.1 CDS Acry_1233 NC_009484.1 1371769 1373403 R bifunctional anthranilate synthase II/anthranilate phosphoribosyltransferase; TrpD; forms a heterotetramer with Trp E and the complex catalyzes the formation of anthranilate from chorismate and glutamine; also catalyzes the formation of N-(5-phospho-D-ribosyl)-anthranilate from athranilate and 5-phospho-alpha-D-ribose 1-diphosphate; functions in tryptophan biosynthesis; bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase complement(1371769..1373403) Acidiphilium cryptum JF-5 5162293 YP_001234364.1 CDS Acry_1234 NC_009484.1 1373400 1374914 R TIGRFAM: anthranilate synthase component I; PFAM: Anthranilate synthase component I and chorismate binding protein; Anthranilate synthase component I domain protein; anthranilate synthase component I complement(1373400..1374914) Acidiphilium cryptum JF-5 5162294 YP_001234365.1 CDS Acry_1235 NC_009484.1 1374925 1376811 R hypothetical protein complement(1374925..1376811) Acidiphilium cryptum JF-5 5160821 YP_001234366.1 CDS Acry_1236 NC_009484.1 1376923 1377684 D PFAM: triosephosphate isomerase; Triose-phosphate isomerase 1376923..1377684 Acidiphilium cryptum JF-5 5162402 YP_001234367.1 CDS Acry_1237 NC_009484.1 1377794 1378276 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; preprotein translocase subunit SecG 1377794..1378276 Acidiphilium cryptum JF-5 5162403 YP_001234368.1 CDS pyrG NC_009484.1 1378344 1379975 D CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase 1378344..1379975 Acidiphilium cryptum JF-5 5160162 YP_001234369.1 CDS Acry_1239 NC_009484.1 1379972 1380799 D catalyzes the formation of 2-dehydro-3-deoxy-D-octonate 8-phosphate from phosphoenolpyruvate and D-arabinose 5-phosphate in LPS biosynthesis; 2-dehydro-3-deoxyphosphooctonate aldolase 1379972..1380799 Acidiphilium cryptum JF-5 5160123 YP_001234370.1 CDS Acry_1240 NC_009484.1 1380833 1381450 R hypothetical protein complement(1380833..1381450) Acidiphilium cryptum JF-5 5160124 YP_001234371.1 CDS Acry_1241 NC_009484.1 1381443 1381778 R hypothetical protein complement(1381443..1381778) Acidiphilium cryptum JF-5 5160751 YP_001234372.1 CDS Acry_1242 NC_009484.1 1381844 1382617 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit complement(1381844..1382617) Acidiphilium cryptum JF-5 5159784 YP_001234373.1 CDS Acry_1243 NC_009484.1 1382808 1384976 D catalyzes the formation of malate from glyoxylate and acetyl-CoA; malate synthase G 1382808..1384976 Acidiphilium cryptum JF-5 5159785 YP_001234374.1 CDS Acry_1244 NC_009484.1 1385053 1387455 D PFAM: EAL domain protein; diguanylate phosphodiesterase 1385053..1387455 Acidiphilium cryptum JF-5 5160949 YP_001234375.1 CDS Acry_1245 NC_009484.1 1387537 1388136 D hypothetical protein 1387537..1388136 Acidiphilium cryptum JF-5 5162371 YP_001234376.1 CDS Acry_1246 NC_009484.1 1388273 1388596 D hypothetical protein 1388273..1388596 Acidiphilium cryptum JF-5 5162372 YP_001234377.1 CDS Acry_1247 NC_009484.1 1388729 1388926 D hypothetical protein 1388729..1388926 Acidiphilium cryptum JF-5 5161356 YP_001234378.1 CDS Acry_1248 NC_009484.1 1388995 1390677 R PFAM: Polypeptide-transport-associated domain protein, ShlB-type; polypeptide-transport-associated domain-containing protein complement(1388995..1390677) Acidiphilium cryptum JF-5 5161669 YP_001234379.1 CDS Acry_1249 NC_009484.1 1390773 1391990 R hypothetical protein complement(1390773..1391990) Acidiphilium cryptum JF-5 5161670 YP_001234380.1 CDS Acry_1250 NC_009484.1 1392509 1393075 D hypothetical protein 1392509..1393075 Acidiphilium cryptum JF-5 5162061 YP_001234381.1 CDS Acry_1251 NC_009484.1 1393256 1393498 R hypothetical protein complement(1393256..1393498) Acidiphilium cryptum JF-5 5162062 YP_001234382.1 CDS Acry_1252 NC_009484.1 1393498 1394838 D PFAM: membrane protein involved in aromatic hydrocarbon degradation; aromatic hydrocarbon degradation membrane protein 1393498..1394838 Acidiphilium cryptum JF-5 5162063 YP_001234383.1 CDS Acry_1253 NC_009484.1 1394953 1396578 D PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; glucose-methanol-choline oxidoreductase 1394953..1396578 Acidiphilium cryptum JF-5 5162465 YP_001234384.1 CDS Acry_1254 NC_009484.1 1396604 1398019 D PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 1396604..1398019 Acidiphilium cryptum JF-5 5162258 YP_001234385.1 CDS Acry_1255 NC_009484.1 1398035 1398574 R hypothetical protein complement(1398035..1398574) Acidiphilium cryptum JF-5 5162259 YP_001234386.1 CDS Acry_1256 NC_009484.1 1398567 1400285 R PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(1398567..1400285) Acidiphilium cryptum JF-5 5162020 YP_001234387.1 CDS Acry_1257 NC_009484.1 1400297 1401583 R Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase complement(1400297..1401583) Acidiphilium cryptum JF-5 5161941 YP_001234388.1 CDS Acry_1258 NC_009484.1 1401595 1402437 R PFAM: MaoC domain protein dehydratase; dehydratase complement(1401595..1402437) Acidiphilium cryptum JF-5 5161942 YP_001234389.1 CDS fabG NC_009484.1 1402443 1403933 R Catalyzes the first of the two reduction steps in the elongation cycle of fatty acid synthesis; 3-ketoacyl-ACP reductase complement(1402443..1403933) Acidiphilium cryptum JF-5 5162171 YP_001234390.1 CDS fadE NC_009484.1 1403930 1406506 R functions in fatty acid oxidation; converts acyl-CoA and FAD to FADH2 and delta2-enoyl-CoA; acyl-CoA dehydrogenase complement(1403930..1406506) Acidiphilium cryptum JF-5 5162472 YP_001234391.1 CDS Acry_1261 NC_009484.1 1406539 1407609 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; ferredoxin complement(1406539..1407609) Acidiphilium cryptum JF-5 5162473 YP_001234392.1 CDS Acry_1262 NC_009484.1 1407613 1408815 R PFAM: fatty acid desaturase; alkane 1-monooxygenase complement(1407613..1408815) Acidiphilium cryptum JF-5 5161776 YP_001234393.1 CDS Acry_1263 NC_009484.1 1409168 1410481 R hypothetical protein complement(1409168..1410481) Acidiphilium cryptum JF-5 5161903 YP_001234394.1 CDS Acry_1264 NC_009484.1 1410831 1411517 D hypothetical protein 1410831..1411517 Acidiphilium cryptum JF-5 5161904 YP_001234395.1 CDS Acry_1265 NC_009484.1 1411510 1412157 D hypothetical protein 1411510..1412157 Acidiphilium cryptum JF-5 5161877 YP_001234396.1 CDS Acry_1266 NC_009484.1 1412161 1413315 R PFAM: protein of unknown function DUF453; hypothetical protein complement(1412161..1413315) Acidiphilium cryptum JF-5 5161761 YP_001234397.1 CDS Acry_1267 NC_009484.1 1413320 1414027 R PFAM: regulatory protein GntR, HTH; GntR domain protein; Helix-turn-helix, type 11 domain protein; GntR family transcriptional regulator complement(1413320..1414027) Acidiphilium cryptum JF-5 5161762 YP_001234398.1 CDS Acry_1268 NC_009484.1 1414124 1415491 D PFAM: MmgE/PrpD family protein; MmgE/PrpD family protein 1414124..1415491 Acidiphilium cryptum JF-5 5161785 YP_001234399.1 CDS Acry_1269 NC_009484.1 1415552 1416952 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 1415552..1416952 Acidiphilium cryptum JF-5 5161725 YP_001234400.1 CDS Acry_1270 NC_009484.1 1416984 1418045 D PFAM: isocitrate/isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 1416984..1418045 Acidiphilium cryptum JF-5 5161726 YP_001234401.1 CDS Acry_1271 NC_009484.1 1418070 1419854 R PFAM: glycoside hydrolase 15-related; glycoside hydrolase 15-like protein complement(1418070..1419854) Acidiphilium cryptum JF-5 5161709 YP_001234402.1 CDS Acry_1272 NC_009484.1 1419870 1421144 R TIGRFAM: ribose 5-phosphate isomerase; carbohydrate kinase, thermoresistant glucokinase family; PFAM: shikimate kinase; Ribose 5-phosphate isomerase; ribose 5-phosphate isomerase complement(1419870..1421144) Acidiphilium cryptum JF-5 5161615 YP_001234403.1 CDS Acry_1273 NC_009484.1 1421159 1421896 R TIGRFAM: 6-phosphogluconolactonase; 6-phosphogluconolactonase complement(1421159..1421896) Acidiphilium cryptum JF-5 5161616 YP_001234404.1 CDS Acry_1274 NC_009484.1 1421896 1422714 R TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase; sucrose-6F-phosphate phosphohydrolase; Haloacid dehalogenase domain protein hydrolase, type 3; cof family hydrolase complement(1421896..1422714) Acidiphilium cryptum JF-5 5161634 YP_001234405.1 CDS Acry_1275 NC_009484.1 1422711 1424315 R TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase complement(1422711..1424315) Acidiphilium cryptum JF-5 5161618 YP_001234406.1 CDS Acry_1276 NC_009484.1 1424312 1425316 R similar to full-length Gnd, these proteins seems to have a truncated C-terminal 6PGD domainin; in Methylobacillus flagellatus this gene is essential for NAD+-dependent oxidation of 6-phosphogluconate; 6-phosphogluconate dehydrogenase complement(1424312..1425316) Acidiphilium cryptum JF-5 5161619 YP_001234407.1 CDS Acry_1277 NC_009484.1 1425436 1428267 R catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; catalyzes isomerization of glucose 6-phosphate and fructose 6-phosphate; bifunctional transaldolase/phosoglucose isomerase complement(1425436..1428267) Acidiphilium cryptum JF-5 5161497 YP_001234408.1 CDS Acry_1278 NC_009484.1 1428533 1430338 D binds to the ribosome on the universally-conserved alpha-sarcin loop; GTP-binding protein LepA 1428533..1430338 Acidiphilium cryptum JF-5 5161515 YP_001234409.1 CDS Acry_1279 NC_009484.1 1430344 1431699 D PFAM: protein of unknown function DUF195; hypothetical protein 1430344..1431699 Acidiphilium cryptum JF-5 5161516 YP_001234410.1 CDS Acry_1280 NC_009484.1 1431994 1432338 D hypothetical protein 1431994..1432338 Acidiphilium cryptum JF-5 5161759 YP_001234411.1 CDS Acry_1281 NC_009484.1 1432340 1432981 R hypothetical protein complement(1432340..1432981) Acidiphilium cryptum JF-5 5161221 YP_001234412.1 CDS Acry_1282 NC_009484.1 1433134 1433745 R PFAM: transposase, IS4 family protein; transposase, IS4 family protein complement(1433134..1433745) Acidiphilium cryptum JF-5 5161222 YP_001234413.1 CDS Acry_1283 NC_009484.1 1434193 1434624 R PFAM: DoxX family protein; DoxX family protein complement(1434193..1434624) Acidiphilium cryptum JF-5 5161403 YP_001234414.1 CDS Acry_1284 NC_009484.1 1434753 1435700 D PFAM: regulatory protein, LysR; helix-turn-helix, Fis-type; LysR, substrate-binding; LysR family transcriptional regulator 1434753..1435700 Acidiphilium cryptum JF-5 5161259 YP_001234415.1 CDS Acry_1285 NC_009484.1 1435888 1436265 D PFAM: transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1435888..1436265 Acidiphilium cryptum JF-5 5161260 YP_001234416.1 CDS Acry_1286 NC_009484.1 1436262 1436819 D hypothetical protein 1436262..1436819 Acidiphilium cryptum JF-5 5161073 YP_001234417.1 CDS Acry_1287 NC_009484.1 1437024 1437212 D hypothetical protein 1437024..1437212 Acidiphilium cryptum JF-5 5161226 YP_001234418.1 CDS Acry_1288 NC_009484.1 1437294 1439069 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer complement(1437294..1439069) Acidiphilium cryptum JF-5 5161227 YP_001234419.1 CDS Acry_1289 NC_009484.1 1439139 1439381 D hypothetical protein 1439139..1439381 Acidiphilium cryptum JF-5 5159746 YP_001234420.1 CDS Acry_1290 NC_009484.1 1439579 1441486 D hypothetical protein 1439579..1441486 Acidiphilium cryptum JF-5 5161024 YP_001234421.1 CDS Acry_1291 NC_009484.1 1441483 1442298 D hypothetical protein 1441483..1442298 Acidiphilium cryptum JF-5 5161025 YP_001234422.1 CDS Acry_1292 NC_009484.1 1442302 1444230 D PFAM: glycosyl transferase, family 2; General secretory system II, protein E domain protein; glycosyl transferase family protein 1442302..1444230 Acidiphilium cryptum JF-5 5161011 YP_001234423.1 CDS Acry_1293 NC_009484.1 1444647 1445399 D hypothetical protein 1444647..1445399 Acidiphilium cryptum JF-5 5161000 YP_001234424.1 CDS Acry_1294 NC_009484.1 1445553 1447712 R PFAM: glycosyl transferase, family 2; glycosyl transferase family protein complement(1445553..1447712) Acidiphilium cryptum JF-5 5161001 YP_001234425.1 CDS Acry_1295 NC_009484.1 1448043 1448363 D hypothetical protein 1448043..1448363 Acidiphilium cryptum JF-5 5160939 YP_001234426.1 CDS Acry_1296 NC_009484.1 1448420 1450204 R TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; single-stranded-DNA-specific exonuclease RecJ complement(1448420..1450204) Acidiphilium cryptum JF-5 5161857 YP_001234427.1 CDS glpX NC_009484.1 1450189 1451175 R type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II complement(1450189..1451175) Acidiphilium cryptum JF-5 5160948 YP_001234428.1 CDS Acry_1298 NC_009484.1 1451206 1452495 R catalyzes the formation of L-aspartate 4-semialdehyde from L-homoserine; homoserine dehydrogenase complement(1451206..1452495) Acidiphilium cryptum JF-5 5162337 YP_001234429.1 CDS Acry_1299 NC_009484.1 1452492 1453703 R PFAM: aminotransferase, class I and II; aminotransferase complement(1452492..1453703) Acidiphilium cryptum JF-5 5160760 YP_001234430.1 CDS Acry_1300 NC_009484.1 1453700 1454353 R hypothetical protein complement(1453700..1454353) Acidiphilium cryptum JF-5 5160761 YP_001234431.1 CDS Acry_1301 NC_009484.1 1454416 1456215 D TIGRFAM: poly(R)-hydroxyalkanoic acid synthase, class I; PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; poly(R)-hydroxyalkanoic acid synthase 1454416..1456215 Acidiphilium cryptum JF-5 5160714 YP_001234432.1 CDS Acry_1302 NC_009484.1 1456212 1457294 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 1456212..1457294 Acidiphilium cryptum JF-5 5160737 YP_001234433.1 CDS Acry_1303 NC_009484.1 1457308 1458603 D hypothetical protein 1457308..1458603 Acidiphilium cryptum JF-5 5160738 YP_001234434.1 CDS Acry_1304 NC_009484.1 1458600 1459562 D PFAM: cobalamin synthesis protein, P47K; cobalamin synthesis CobW domain protein; cobalamin synthesis protein, P47K 1458600..1459562 Acidiphilium cryptum JF-5 5160529 YP_001234435.1 CDS Acry_1305 NC_009484.1 1459559 1460605 D SMART: WD-40 repeat protein; WD-40 repeat-containing protein 1459559..1460605 Acidiphilium cryptum JF-5 5160279 YP_001234436.1 CDS Acry_1306 NC_009484.1 1460607 1461431 D PFAM: aldo/keto reductase; aldo/keto reductase 1460607..1461431 Acidiphilium cryptum JF-5 5160280 YP_001234437.1 CDS Acry_1307 NC_009484.1 1461498 1463330 R TIGRFAM: small GTP-binding protein; GTP-binding protein TypA; PFAM: elongation factor G domain protein; protein synthesis factor, GTP-binding; elongation factor Tu, domain 2 protein; GTP-binding protein TypA complement(1461498..1463330) Acidiphilium cryptum JF-5 5160496 YP_001234438.1 CDS Acry_1308 NC_009484.1 1463474 1463983 R hypothetical protein complement(1463474..1463983) Acidiphilium cryptum JF-5 5160503 YP_001234439.1 CDS Acry_1309 NC_009484.1 1464003 1465430 D PFAM: major facilitator superfamily MFS_1; major facilitator transporter 1464003..1465430 Acidiphilium cryptum JF-5 5160504 YP_001234440.1 CDS Acry_1310 NC_009484.1 1465441 1467309 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(1465441..1467309) Acidiphilium cryptum JF-5 5160199 YP_001234441.1 CDS Acry_1311 NC_009484.1 1467404 1467826 D PFAM: nucleoside diphosphate kinase; nucleoside-diphosphate kinase 1467404..1467826 Acidiphilium cryptum JF-5 5160323 YP_001234442.1 CDS Acry_1312 NC_009484.1 1467892 1468254 R hypothetical protein complement(1467892..1468254) Acidiphilium cryptum JF-5 5160324 YP_001234443.1 CDS Acry_1313 NC_009484.1 1468422 1469462 D TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell division protein FtsA; cell shape determining protein MreB/Mrl; rod shape-determining protein MreB 1468422..1469462 Acidiphilium cryptum JF-5 5159772 YP_001234444.1 CDS Acry_1314 NC_009484.1 1469509 1470387 D PFAM: UspA domain protein; UspA domain-containing protein 1469509..1470387 Acidiphilium cryptum JF-5 5159834 YP_001234445.1 CDS Acry_1315 NC_009484.1 1470400 1470849 D PFAM: regulatory protein, MarR; MarR family transcriptional regulator 1470400..1470849 Acidiphilium cryptum JF-5 5159835 YP_001234446.1 CDS Acry_1316 NC_009484.1 1470930 1471637 D PFAM: Pirin domain protein; pirin domain-containing protein 1470930..1471637 Acidiphilium cryptum JF-5 5159719 YP_001234447.1 CDS Acry_1317 NC_009484.1 1471857 1473383 D TIGRFAM: protease Do; PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; protease Do 1471857..1473383 Acidiphilium cryptum JF-5 5159825 YP_001234448.1 CDS Acry_1318 NC_009484.1 1473540 1474466 D with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP; sulfate adenylyltransferase subunit 2 1473540..1474466 Acidiphilium cryptum JF-5 5159826 YP_001234449.1 CDS Acry_1319 NC_009484.1 1474466 1476331 D TIGRFAM: sulfate adenylyltransferase, large subunit; PFAM: protein synthesis factor, GTP-binding; adenylylsulfate kinase; elongation factor Tu, domain 2 protein; sulfate adenylyltransferase, large subunit 1474466..1476331 Acidiphilium cryptum JF-5 5159765 YP_001234450.1 CDS Acry_1320 NC_009484.1 1476406 1477515 D catalyzes the formation of chorismate from 5-O-(1-carboxyvinyl)-3-phosphoshikimate in aromatic amino acid biosynthesis; chorismate synthase 1476406..1477515 Acidiphilium cryptum JF-5 5159565 YP_001234451.1 CDS Acry_1321 NC_009484.1 1477688 1478782 R hypothetical protein complement(1477688..1478782) Acidiphilium cryptum JF-5 5159566 YP_001234452.1 CDS Acry_1322 NC_009484.1 1478850 1480106 D PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor 1478850..1480106 Acidiphilium cryptum JF-5 5159687 YP_001234453.1 CDS Acry_1323 NC_009484.1 1480246 1480677 D PFAM: protein of unknown function DUF336; hypothetical protein 1480246..1480677 Acidiphilium cryptum JF-5 5159467 YP_001234454.1 CDS Acry_1324 NC_009484.1 1480764 1482173 R PFAM: peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; 2-alkenal reductase complement(1480764..1482173) Acidiphilium cryptum JF-5 5159468 YP_001234455.1 CDS Acry_1325 NC_009484.1 1482178 1483023 R PFAM: glutamyl-tRNA synthetase, class Ic; glutamyl-tRNA synthetase complement(1482178..1483023) Acidiphilium cryptum JF-5 5159541 YP_001234456.1 CDS Acry_1326 NC_009484.1 1483073 1483741 D PFAM: phospholipase/Carboxylesterase; phospholipase/carboxylesterase 1483073..1483741 Acidiphilium cryptum JF-5 5160073 YP_001234457.1 CDS Acry_1327 NC_009484.1 1483889 1484449 D PFAM: HNH endonuclease; SMART: HNH nuclease; HNH endonuclease 1483889..1484449 Acidiphilium cryptum JF-5 5160074 YP_001234458.1 CDS Acry_1328 NC_009484.1 1484503 1485717 D catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta 1484503..1485717 Acidiphilium cryptum JF-5 5160175 YP_001234459.1 CDS trpA NC_009484.1 1485714 1486544 D catalyzes the formation of indole and glyceraldehyde 3-phosphate from indoleglycerol phosphate in tryptophan biosynthesis; tryptophan synthase subunit alpha 1485714..1486544 Acidiphilium cryptum JF-5 5159557 YP_001234460.1 CDS Acry_1330 NC_009484.1 1486669 1487934 R TIGRFAM: phosphoribosylamine--glycine ligase; PFAM: phosphoribosylglycinamide synthetase; phosphoribosylamine--glycine ligase complement(1486669..1487934) Acidiphilium cryptum JF-5 5159558 YP_001234461.1 CDS Acry_1331 NC_009484.1 1487989 1489377 D TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit; nucleic acid binding, OB-fold, tRNA/helicase-type; exodeoxyribonuclease VII large subunit 1487989..1489377 Acidiphilium cryptum JF-5 5159924 YP_001234462.1 CDS Acry_1332 NC_009484.1 1489390 1490094 R hypothetical protein complement(1489390..1490094) Acidiphilium cryptum JF-5 5161112 YP_001234463.1 CDS Acry_1333 NC_009484.1 1490091 1490666 R PFAM: sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; Sigma-70, region 4 type 2; ECF subfamily RNA polymerase sigma-24 factor complement(1490091..1490666) Acidiphilium cryptum JF-5 5161113 YP_001234464.1 CDS Acry_1334 NC_009484.1 1491134 1491586 D PFAM: ferric-uptake regulator; ferric uptake regulator family protein 1491134..1491586 Acidiphilium cryptum JF-5 5161413 YP_001234465.1 CDS Acry_1335 NC_009484.1 1491583 1492395 D putative hemolysin-like protein 1491583..1492395 Acidiphilium cryptum JF-5 5162301 YP_001234466.1 CDS Acry_1336 NC_009484.1 1492456 1492965 D PFAM: protein of unknown function DUF1321; hypothetical protein 1492456..1492965 Acidiphilium cryptum JF-5 5162302 YP_001234467.1 CDS Acry_1337 NC_009484.1 1492981 1494627 D TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region; Fe-S type hydro-lyase tartrate/fumarate beta region; tartrate/fumarate subfamily Fe-S type hydro-lyase subunit beta 1492981..1494627 Acidiphilium cryptum JF-5 5161754 YP_001234468.1 CDS Acry_1338 NC_009484.1 1494635 1495030 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1494635..1495030 Acidiphilium cryptum JF-5 5161732 YP_001234469.1 CDS queA NC_009484.1 1495027 1496064 D Synthesizes oQ from preQ1 in a single S-adenosylmethionine-requiring step; S-adenosylmethionine--tRNA ribosyltransferase-isomerase 1495027..1496064 Acidiphilium cryptum JF-5 5161733 YP_001234470.1 CDS Acry_1340 NC_009484.1 1496061 1497191 D TIGRFAM: tRNA-guanine transglycosylase, various specificities; queuine tRNA-ribosyltransferase; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 1496061..1497191 Acidiphilium cryptum JF-5 5161561 YP_001234471.1 CDS Acry_1341 NC_009484.1 1497172 1497636 D NADPH-dependent; catalyzes the reduction of 7-cyano-7-deazaguanine to 7-aminomethyl-7-deazaguanine in queuosine biosynthesis; 7-cyano-7-deazaguanine reductase 1497172..1497636 Acidiphilium cryptum JF-5 5160166 YP_001234472.1 CDS Acry_1342 NC_009484.1 1497629 1498690 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; domain of unknown function DUF1730; hypothetical protein 1497629..1498690 Acidiphilium cryptum JF-5 5160167 YP_001234473.1 CDS Acry_1343 NC_009484.1 1498776 1499234 D TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; large conductance mechanosensitive channel protein 1498776..1499234 Acidiphilium cryptum JF-5 5159696 YP_001234474.1 CDS Acry_1344 NC_009484.1 1499429 1500082 D hypothetical protein 1499429..1500082 Acidiphilium cryptum JF-5 5159580 YP_001234475.1 CDS Acry_1345 NC_009484.1 1500222 1500926 R PFAM: LrgB family protein; LrgB family protein complement(1500222..1500926) Acidiphilium cryptum JF-5 5159581 YP_001234476.1 CDS Acry_1346 NC_009484.1 1500919 1501356 R PFAM: LrgA family protein; LrgA family protein complement(1500919..1501356) Acidiphilium cryptum JF-5 5159591 YP_001234477.1 CDS Acry_1347 NC_009484.1 1501461 1502390 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1501461..1502390 Acidiphilium cryptum JF-5 5160541 YP_001234478.1 CDS Acry_1348 NC_009484.1 1502467 1503849 D PFAM: UDP-glucose/GDP-mannose dehydrogenase; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; UDP-glucose 6-dehydrogenase 1502467..1503849 Acidiphilium cryptum JF-5 5160542 YP_001234479.1 CDS Acry_1349 NC_009484.1 1503842 1505587 D PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 1503842..1505587 Acidiphilium cryptum JF-5 5160401 YP_001234480.1 CDS Acry_1350 NC_009484.1 1505612 1508752 D PFAM: Tetratricopeptide TPR_4; Methyltransferase type 11; Methyltransferase type 12; type 12 methyltransferase 1505612..1508752 Acidiphilium cryptum JF-5 5162369 YP_001234481.1 CDS Acry_1351 NC_009484.1 1508815 1509795 D lipopolysaccharide biosynthesis protein-like protein 1508815..1509795 Acidiphilium cryptum JF-5 5162370 YP_001234482.1 CDS Acry_1352 NC_009484.1 1509792 1510604 D PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 1509792..1510604 Acidiphilium cryptum JF-5 5161295 YP_001234483.1 CDS Acry_1353 NC_009484.1 1510745 1512097 D TIGRFAM: RNA modification enzyme, MiaB family; tRNA-i(6)A37 thiotransferase enzyme MiaB; PFAM: deoxyribonuclease/rho motif-related TRAM; Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB; RNA modification protein 1510745..1512097 Acidiphilium cryptum JF-5 5161489 YP_001234484.1 CDS Acry_1354 NC_009484.1 1512094 1513095 D PFAM: PhoH family protein; KH, type 1, domain protein; PhoH family protein 1512094..1513095 Acidiphilium cryptum JF-5 5161490 YP_001234485.1 CDS Acry_1355 NC_009484.1 1513092 1513544 D PFAM: protein of unknown function UPF0054; hypothetical protein 1513092..1513544 Acidiphilium cryptum JF-5 5160368 YP_001234486.1 CDS Acry_1356 NC_009484.1 1513526 1514395 D PFAM: CBS domain containing protein; transporter-associated region; hypothetical protein 1513526..1514395 Acidiphilium cryptum JF-5 5161610 YP_001234487.1 CDS Acry_1357 NC_009484.1 1514520 1514735 D hypothetical protein 1514520..1514735 Acidiphilium cryptum JF-5 5161611 YP_001234488.1 CDS Acry_1358 NC_009484.1 1514858 1515682 R hypothetical protein complement(1514858..1515682) Acidiphilium cryptum JF-5 5161586 YP_001234489.1 CDS Acry_1359 NC_009484.1 1515654 1515965 R PFAM: protein of unknown function DUF1330; hypothetical protein complement(1515654..1515965) Acidiphilium cryptum JF-5 5160643 YP_001234490.1 CDS Acry_1360 NC_009484.1 1516009 1516626 R hypothetical protein complement(1516009..1516626) Acidiphilium cryptum JF-5 5160644 YP_001234491.1 CDS Acry_1361 NC_009484.1 1516818 1517438 D hypothetical protein 1516818..1517438 Acidiphilium cryptum JF-5 5162110 YP_001234492.1 CDS Acry_1362 NC_009484.1 1517445 1519298 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(1517445..1519298) Acidiphilium cryptum JF-5 5159506 YP_001234493.1 CDS Acry_1363 NC_009484.1 1519521 1520570 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 1519521..1520570 Acidiphilium cryptum JF-5 5159507 YP_001234494.1 CDS Acry_1364 NC_009484.1 1520849 1521685 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1520849..1521685 Acidiphilium cryptum JF-5 5159579 YP_001234495.1 CDS Acry_1365 NC_009484.1 1521682 1522731 D PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 1521682..1522731 Acidiphilium cryptum JF-5 5159853 YP_001234496.1 CDS Acry_1366 NC_009484.1 1522776 1523765 D PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 1522776..1523765 Acidiphilium cryptum JF-5 5159854 YP_001234497.1 CDS Acry_1367 NC_009484.1 1523874 1525385 D PFAM: helix-turn-helix- domain containing protein, AraC type; HhH-GPD family protein; Ada, metal-binding domain protein; AlkA domain protein; Ada metal-binding domain-containing protein 1523874..1525385 Acidiphilium cryptum JF-5 5159949 YP_001234498.1 CDS Acry_1368 NC_009484.1 1525375 1525932 D TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 1525375..1525932 Acidiphilium cryptum JF-5 5159606 YP_001234499.1 CDS Acry_1369 NC_009484.1 1525969 1527162 D PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; serine--glyoxylate transaminase 1525969..1527162 Acidiphilium cryptum JF-5 5159607 YP_001234500.1 CDS Acry_1370 NC_009484.1 1527322 1527783 D hypothetical protein 1527322..1527783 Acidiphilium cryptum JF-5 5159475 YP_001234501.1 CDS Acry_1371 NC_009484.1 1527803 1528588 D hypothetical protein 1527803..1528588 Acidiphilium cryptum JF-5 5159903 YP_001234502.1 CDS Acry_1372 NC_009484.1 1528626 1528988 D hypothetical protein 1528626..1528988 Acidiphilium cryptum JF-5 5159904 YP_001234503.1 CDS Acry_1373 NC_009484.1 1528966 1529193 R hypothetical protein complement(1528966..1529193) Acidiphilium cryptum JF-5 5160090 YP_001234504.1 CDS Acry_1374 NC_009484.1 1529728 1530204 D hypothetical protein 1529728..1530204 Acidiphilium cryptum JF-5 5159563 YP_001234505.1 CDS Acry_1375 NC_009484.1 1530323 1532257 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 1530323..1532257 Acidiphilium cryptum JF-5 5159564 YP_001234506.1 CDS groEL NC_009484.1 1532301 1533935 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is not essential for growth; chaperonin GroEL complement(1532301..1533935) Acidiphilium cryptum JF-5 5159575 YP_001234507.1 CDS Acry_1377 NC_009484.1 1533980 1535002 R PFAM: amidohydrolase 2; amidohydrolase 2 complement(1533980..1535002) Acidiphilium cryptum JF-5 5160215 YP_001234508.1 CDS Acry_1378 NC_009484.1 1535080 1535448 R PFAM: monooxygenase component MmoB/DmpM; monooxygenase component MmoB/DmpM complement(1535080..1535448) Acidiphilium cryptum JF-5 5160216 YP_001234509.1 CDS Acry_1379 NC_009484.1 1535472 1536527 R PFAM: methane/phenol/toluene hydroxylase; methane/phenol/toluene hydroxylase complement(1535472..1536527) Acidiphilium cryptum JF-5 5159471 YP_001234510.1 CDS Acry_1380 NC_009484.1 1536570 1537661 R PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding subunit complement(1536570..1537661) Acidiphilium cryptum JF-5 5159779 YP_001234511.1 CDS Acry_1381 NC_009484.1 1537745 1539412 R PFAM: methane/phenol/toluene hydroxylase; methane monooxygenase complement(1537745..1539412) Acidiphilium cryptum JF-5 5159780 YP_001234512.1 CDS Acry_1382 NC_009484.1 1539911 1540381 D hypothetical protein 1539911..1540381 Acidiphilium cryptum JF-5 5160039 YP_001234513.1 CDS Acry_1383 NC_009484.1 1540378 1540686 D hypothetical protein 1540378..1540686 Acidiphilium cryptum JF-5 5159473 YP_001234514.1 CDS Acry_1384 NC_009484.1 1540703 1541833 D hypothetical protein 1540703..1541833 Acidiphilium cryptum JF-5 5159474 YP_001234515.1 CDS Acry_1385 NC_009484.1 1541860 1542036 D hypothetical protein 1541860..1542036 Acidiphilium cryptum JF-5 5160437 YP_001234516.1 CDS Acry_1386 NC_009484.1 1542044 1542307 R related to arylsulfate sulfotransferase involved in siderophore biosynthesis-like protein; hypothetical protein complement(1542044..1542307) Acidiphilium cryptum JF-5 5160500 YP_001234517.1 CDS Acry_1387 NC_009484.1 1542598 1542993 D PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; glyoxalase/bleomycin resistance protein/dioxygenase 1542598..1542993 Acidiphilium cryptum JF-5 5160501 YP_001234518.1 CDS Acry_1388 NC_009484.1 1543009 1543212 R hypothetical protein complement(1543009..1543212) Acidiphilium cryptum JF-5 5160509 YP_001234519.1 CDS Acry_1389 NC_009484.1 1543342 1543788 R PFAM: Thioredoxin domain; thioredoxin domain-containing protein complement(1543342..1543788) Acidiphilium cryptum JF-5 5159875 YP_001234520.1 CDS Acry_1390 NC_009484.1 1543781 1545088 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1543781..1545088) Acidiphilium cryptum JF-5 5159876 YP_001234521.1 CDS Acry_1392 NC_009484.1 1545646 1546008 D PFAM: Rhodanese domain protein; rhodanese domain-containing protein 1545646..1546008 Acidiphilium cryptum JF-5 5161777 YP_001234522.1 CDS Acry_1393 NC_009484.1 1546049 1547059 D TIGRFAM: efflux transporter, RND family, MFP subunit; RND family efflux transporter MFP subunit 1546049..1547059 Acidiphilium cryptum JF-5 5160527 YP_001234523.1 CDS Acry_1394 NC_009484.1 1547056 1550325 D PFAM: acriflavin resistance protein; acriflavin resistance protein 1547056..1550325 Acidiphilium cryptum JF-5 5160528 YP_001234524.1 CDS Acry_1395 NC_009484.1 1550457 1550711 D PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator 1550457..1550711 Acidiphilium cryptum JF-5 5160797 YP_001234525.1 CDS Acry_1396 NC_009484.1 1550708 1552723 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); hydrogenase 4 subunit B 1550708..1552723 Acidiphilium cryptum JF-5 5160665 YP_001234526.1 CDS Acry_1397 NC_009484.1 1552714 1553670 D formate hydrogenlyase subunit 4-like protein 1552714..1553670 Acidiphilium cryptum JF-5 5160666 YP_001234527.1 CDS Acry_1398 NC_009484.1 1553667 1554356 D hydrogenase 4 membrane component (E)-like protein 1553667..1554356 Acidiphilium cryptum JF-5 5160251 YP_001234528.1 CDS Acry_1399 NC_009484.1 1554353 1555801 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); hydrogenase 4 subunit F 1554353..1555801 Acidiphilium cryptum JF-5 5160457 YP_001234529.1 CDS Acry_1400 NC_009484.1 1555764 1557212 D PFAM: NADH-ubiquinone oxidoreductase, chain 49kDa; NADH-ubiquinone oxidoreductase subunit 49kDa 1555764..1557212 Acidiphilium cryptum JF-5 5160458 YP_001234530.1 CDS Acry_1401 NC_009484.1 1557212 1557715 D PFAM: NADH ubiquinone oxidoreductase, 20 kDa subunit; NADH ubiquinone oxidoreductase, 20 kDa subunit 1557212..1557715 Acidiphilium cryptum JF-5 5160497 YP_001234531.1 CDS Acry_1402 NC_009484.1 1557743 1558291 R PFAM: Ferritin, Dps family protein; Ferritin, Dps family protein complement(1557743..1558291) Acidiphilium cryptum JF-5 5160781 YP_001234532.1 CDS Acry_1403 NC_009484.1 1558361 1559134 R PFAM: tRNA/rRNA methyltransferase (SpoU); tRNA/rRNA methyltransferase SpoU complement(1558361..1559134) Acidiphilium cryptum JF-5 5160782 YP_001234533.1 CDS cysS NC_009484.1 1559131 1560480 R catalyzes a two-step reaction; charges a cysteine by linking its carboxyl group to the alpha-phosphate of ATP then transfers the aminoacyl-adenylate to its tRNA; cysteinyl-tRNA synthetase complement(1559131..1560480) Acidiphilium cryptum JF-5 5160514 YP_001234534.1 CDS Acry_1405 NC_009484.1 1560608 1561858 D PFAM: natural resistance-associated macrophage protein; natural resistance-associated macrophage protein 1560608..1561858 Acidiphilium cryptum JF-5 5160298 YP_001234535.1 CDS Acry_1406 NC_009484.1 1561929 1563212 D catalyzes the formation of L-ornithine from N(2)-acetyl-L-ornithine; acetylornithine deacetylase 1561929..1563212 Acidiphilium cryptum JF-5 5160299 YP_001234536.1 CDS Acry_1407 NC_009484.1 1563238 1564659 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 1563238..1564659 Acidiphilium cryptum JF-5 5159740 YP_001234537.1 CDS Acry_1408 NC_009484.1 1564793 1565137 D hypothetical protein 1564793..1565137 Acidiphilium cryptum JF-5 5160992 YP_001234538.1 CDS hslU NC_009484.1 1565168 1566487 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease ATP-binding subunit HslU complement(1565168..1566487) Acidiphilium cryptum JF-5 5160993 YP_001234539.1 CDS Acry_1410 NC_009484.1 1566484 1567032 R heat shock protein involved in degradation of misfolded proteins; ATP-dependent protease peptidase subunit complement(1566484..1567032) Acidiphilium cryptum JF-5 5162348 YP_001234540.1 CDS Acry_1411 NC_009484.1 1567173 1567610 D hypothetical protein 1567173..1567610 Acidiphilium cryptum JF-5 5160873 YP_001234541.1 CDS Acry_1412 NC_009484.1 1567689 1569086 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 1567689..1569086 Acidiphilium cryptum JF-5 5160874 YP_001234542.1 CDS Acry_1413 NC_009484.1 1569146 1569736 D PFAM: imidazoleglycerol-phosphate dehydratase; imidazoleglycerol-phosphate dehydratase 1569146..1569736 Acidiphilium cryptum JF-5 5160976 YP_001234543.1 CDS hisH NC_009484.1 1569733 1570368 D with HisF IGPS catalyzes the conversion of phosphoribulosyl-formimino-5-aminoimidazole-4-carboxamide ribonucleotide phosphate and glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamide ribonucleotide, and glutamate in histidine biosynthesis; the HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide ribonucleotide; imidazole glycerol phosphate synthase subunit HisH 1569733..1570368 Acidiphilium cryptum JF-5 5161052 YP_001234544.1 CDS Acry_1415 NC_009484.1 1570365 1570925 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 1570365..1570925 Acidiphilium cryptum JF-5 5161053 YP_001234545.1 CDS Acry_1416 NC_009484.1 1570927 1571667 D catalyzes the formation of 5-(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino-l- (5-phosphoribosyl)imidazole-4-carboxamide from 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide; 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase 1570927..1571667 Acidiphilium cryptum JF-5 5161114 YP_001234546.1 CDS Acry_1417 NC_009484.1 1571661 1572425 D catalyzes the conversion of 5-[(5-phospho-1-deoxyribulos-1-ylamino)methylideneamino]- 1-(5-phosphoribosyl)imidazole-4-carboxamideand glutamine to imidazole-glycerol phosphate, 5-aminoimidazol-4-carboxamideribonucleotide and glutamate; the HisF subunit acts as a cyclase; imidazole glycerol phosphate synthase subunit HisF 1571661..1572425 Acidiphilium cryptum JF-5 5161219 YP_001234547.1 CDS hisE NC_009484.1 1572527 1572928 D catalyzes the formation of 1-(5-phosphoribosyl)-AMP from 1-(5-phosphoribolsyl)-ATP in histidine biosynthesis; phosphoribosyl-ATP pyrophosphatase 1572527..1572928 Acidiphilium cryptum JF-5 5161220 YP_001234548.1 CDS Acry_1419 NC_009484.1 1573133 1575364 D TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; N-acetylglucosamine-6-phosphate deacetylase 1573133..1575364 Acidiphilium cryptum JF-5 5161202 YP_001234549.1 CDS Acry_1420 NC_009484.1 1575409 1576695 D PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 1575409..1576695 Acidiphilium cryptum JF-5 5161172 YP_001234550.1 CDS Acry_1421 NC_009484.1 1576723 1577511 D PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 1576723..1577511 Acidiphilium cryptum JF-5 5161173 YP_001234551.1 CDS Acry_1422 NC_009484.1 1577591 1578352 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(1577591..1578352) Acidiphilium cryptum JF-5 5161305 YP_001234552.1 CDS Acry_1423 NC_009484.1 1578354 1579376 R PFAM: Acetamidase/Formamidase; acetamidase/formamidase complement(1578354..1579376) Acidiphilium cryptum JF-5 5162321 YP_001234553.1 CDS Acry_1424 NC_009484.1 1579532 1580308 D PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1579532..1580308 Acidiphilium cryptum JF-5 5162322 YP_001234554.1 CDS Acry_1425 NC_009484.1 1580328 1581038 D PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1580328..1581038 Acidiphilium cryptum JF-5 5161278 YP_001234555.1 CDS Acry_1426 NC_009484.1 1581123 1582757 D PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 1581123..1582757 Acidiphilium cryptum JF-5 5161369 YP_001234556.1 CDS Acry_1427 NC_009484.1 1582774 1587534 R PFAM: NAD-glutamate dehydrogenase; NAD-glutamate dehydrogenase complement(1582774..1587534) Acidiphilium cryptum JF-5 5161370 YP_001234557.1 CDS Acry_1428 NC_009484.1 1587853 1589754 D TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase, central domain protein; peptidase M41, FtsH extracellular; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 1587853..1589754 Acidiphilium cryptum JF-5 5161243 YP_001234558.1 CDS Acry_1429 NC_009484.1 1589709 1590323 R PFAM: Endonuclease/exonuclease/phosphatase; endonuclease/exonuclease/phosphatase complement(1589709..1590323) Acidiphilium cryptum JF-5 5161520 YP_001234559.1 CDS Acry_1430 NC_009484.1 1590449 1591852 D PFAM: phospholipase D/Transphosphatidylase; phospholipase D/transphosphatidylase 1590449..1591852 Acidiphilium cryptum JF-5 5161521 YP_001234560.1 CDS Acry_1431 NC_009484.1 1591843 1592694 R esterase/lipase-like protein complement(1591843..1592694) Acidiphilium cryptum JF-5 5161491 YP_001234561.1 CDS Acry_1432 NC_009484.1 1592719 1593753 R PFAM: Polyprenyl synthetase; polyprenyl synthetase complement(1592719..1593753) Acidiphilium cryptum JF-5 5161509 YP_001234562.1 CDS Acry_1434 NC_009484.1 1594050 1594769 D O-methyltransferase-like protein 1594050..1594769 Acidiphilium cryptum JF-5 5161778 YP_001234563.1 CDS Acry_1435 NC_009484.1 1594778 1595245 R hypothetical protein complement(1594778..1595245) Acidiphilium cryptum JF-5 5161612 YP_001234564.1 CDS Acry_1436 NC_009484.1 1595471 1596964 D PFAM: acetyl-CoA hydrolase/transferase; acetyl-CoA hydrolase 1595471..1596964 Acidiphilium cryptum JF-5 5161545 YP_001234565.1 CDS Acry_1437 NC_009484.1 1597010 1598134 R binds the polymerase to DNA and acts as a sliding clamp; DNA polymerase III subunit beta complement(1597010..1598134) Acidiphilium cryptum JF-5 5161546 YP_001234566.1 CDS Acry_1438 NC_009484.1 1598333 1600066 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1598333..1600066 Acidiphilium cryptum JF-5 5161353 YP_001234567.1 CDS Acry_1439 NC_009484.1 1600076 1601395 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1600076..1601395 Acidiphilium cryptum JF-5 5161660 YP_001234568.1 CDS Acry_1440 NC_009484.1 1601465 1602913 D PFAM: fumarate lyase; fumarate lyase 1601465..1602913 Acidiphilium cryptum JF-5 5161661 YP_001234569.1 CDS Acry_1441 NC_009484.1 1602832 1603800 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(1602832..1603800) Acidiphilium cryptum JF-5 5161753 YP_001234570.1 CDS Acry_1442 NC_009484.1 1603866 1604324 D PFAM: DoxX family protein; DoxX family protein 1603866..1604324 Acidiphilium cryptum JF-5 5161800 YP_001234571.1 CDS Acry_1443 NC_009484.1 1604324 1605106 D PFAM: Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B; extradiol ring-cleavage dioxygenase III subunit B 1604324..1605106 Acidiphilium cryptum JF-5 5161801 YP_001234572.1 CDS Acry_1444 NC_009484.1 1605082 1606323 R PFAM: major facilitator superfamily MFS_1; major facilitator transporter complement(1605082..1606323) Acidiphilium cryptum JF-5 5161831 YP_001234573.1 CDS Acry_1445 NC_009484.1 1606353 1607882 R PFAM: Na+/solute symporter; Na+/solute symporter complement(1606353..1607882) Acidiphilium cryptum JF-5 5161882 YP_001234574.1 CDS Acry_1446 NC_009484.1 1607894 1608100 R hypothetical protein complement(1607894..1608100) Acidiphilium cryptum JF-5 5161883 YP_001234575.1 CDS Acry_1447 NC_009484.1 1608185 1608766 R PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; guanylate kinase complement(1608185..1608766) Acidiphilium cryptum JF-5 5160206 YP_001234576.1 CDS Acry_1448 NC_009484.1 1608759 1609667 R PFAM: YicC N-terminal domain protein; domain of unknown function DUF1732; hypothetical protein complement(1608759..1609667) Acidiphilium cryptum JF-5 5162435 YP_001234577.1 CDS Acry_1449 NC_009484.1 1609664 1610746 R PFAM: DNA methylase N-4/N-6 domain protein; DNA methylase N-4/N-6 domain-containing protein complement(1609664..1610746) Acidiphilium cryptum JF-5 5162436 YP_001234578.1 CDS Acry_1450 NC_009484.1 1610890 1611660 D PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1610890..1611660 Acidiphilium cryptum JF-5 5162229 YP_001234579.1 CDS Acry_1452 NC_009484.1 1612238 1613257 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1612238..1613257) Acidiphilium cryptum JF-5 5161852 YP_001234580.1 CDS Acry_1453 NC_009484.1 1613327 1613776 D PFAM: protein of unknown function UPF0079; hypothetical protein 1613327..1613776 Acidiphilium cryptum JF-5 5162182 YP_001234581.1 CDS Acry_1454 NC_009484.1 1613773 1616652 D hypothetical protein 1613773..1616652 Acidiphilium cryptum JF-5 5162175 YP_001234582.1 CDS Acry_1455 NC_009484.1 1616649 1620122 D TIGRFAM: UvrD-like DNA helicase, C terminal; PFAM: UvrD/REP helicase; UvrD-like DNA helicase, C terminal 1616649..1620122 Acidiphilium cryptum JF-5 5162179 YP_001234583.1 CDS Acry_1456 NC_009484.1 1620180 1620506 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; thioredoxin 1620180..1620506 Acidiphilium cryptum JF-5 5162180 YP_001234584.1 CDS Acry_1457 NC_009484.1 1620512 1620910 D PFAM: thioesterase superfamily protein; thioesterase superfamily protein 1620512..1620910 Acidiphilium cryptum JF-5 5162157 YP_001234585.1 CDS Acry_1458 NC_009484.1 1620912 1622336 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter complement(1620912..1622336) Acidiphilium cryptum JF-5 5162420 YP_001234586.1 CDS Acry_1459 NC_009484.1 1622344 1623396 R PFAM: aldo/keto reductase; aldo/keto reductase complement(1622344..1623396) Acidiphilium cryptum JF-5 5162421 YP_001234587.1 CDS Acry_1460 NC_009484.1 1623663 1624334 D PFAM: MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 1623663..1624334 Acidiphilium cryptum JF-5 5162007 YP_001234588.1 CDS Acry_1461 NC_009484.1 1624339 1624803 D PFAM: Biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR 1624339..1624803 Acidiphilium cryptum JF-5 5161953 YP_001234589.1 CDS Acry_1462 NC_009484.1 1624848 1626221 R PFAM: FAD linked oxidase domain protein; D-lactate dehydrogenase complement(1624848..1626221) Acidiphilium cryptum JF-5 5161954 YP_001234590.1 CDS Acry_1463 NC_009484.1 1626342 1627154 D PFAM: metallophosphoesterase; metallophosphoesterase 1626342..1627154 Acidiphilium cryptum JF-5 5161957 YP_001234591.1 CDS Acry_1464 NC_009484.1 1627146 1627685 R PFAM: cytochrome B561; cytochrome B561 complement(1627146..1627685) Acidiphilium cryptum JF-5 5162043 YP_001234592.1 CDS Acry_1465 NC_009484.1 1627734 1628738 D hypothetical protein 1627734..1628738 Acidiphilium cryptum JF-5 5162044 YP_001234593.1 CDS Acry_1466 NC_009484.1 1628671 1629342 R PFAM: Negative transcriptional regulator; FMN-binding negative transcriptional regulator complement(1628671..1629342) Acidiphilium cryptum JF-5 5159756 YP_001234594.1 CDS Acry_1467 NC_009484.1 1629352 1631010 R PFAM: shikimate kinase; 3-dehydroquinate synthase; 3-dehydroquinate synthase complement(1629352..1631010) Acidiphilium cryptum JF-5 5160893 YP_001234595.1 CDS Acry_1468 NC_009484.1 1631038 1631952 D PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; phage integrase family protein 1631038..1631952 Acidiphilium cryptum JF-5 5160894 YP_001234596.1 CDS Acry_1469 NC_009484.1 1631979 1632824 R PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(1631979..1632824) Acidiphilium cryptum JF-5 5159920 YP_001234597.1 CDS Acry_1470 NC_009484.1 1632814 1633695 R PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle complement(1632814..1633695) Acidiphilium cryptum JF-5 5159846 YP_001234598.1 CDS flhA NC_009484.1 1633696 1635771 R membrane protein involved in the flagellar export apparatus; flagellar biosynthesis protein FlhA complement(1633696..1635771) Acidiphilium cryptum JF-5 5159847 YP_001234599.1 CDS Acry_1472 NC_009484.1 1635771 1637126 R PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; two component sigma54 specific Fis family transcriptional regulator complement(1635771..1637126) Acidiphilium cryptum JF-5 5159730 YP_001234600.1 CDS Acry_1473 NC_009484.1 1637133 1637531 R TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliN complement(1637133..1637531) Acidiphilium cryptum JF-5 5159529 YP_001234601.1 CDS fliG NC_009484.1 1637497 1638507 R One of three proteins involved in switching the direction of the flagellar rotation; flagellar motor switch protein G complement(1637497..1638507) Acidiphilium cryptum JF-5 5159530 YP_001234602.1 CDS Acry_1475 NC_009484.1 1638504 1640066 R TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring C-terminal domain protein; flagellar M-ring protein FliF complement(1638504..1640066) Acidiphilium cryptum JF-5 5160046 YP_001234603.1 CDS Acry_1476 NC_009484.1 1640186 1640641 R PFAM: CMP/dCMP deaminase, zinc-binding; zinc-binding CMP/dCMP deaminase complement(1640186..1640641) Acidiphilium cryptum JF-5 5160052 YP_001234604.1 CDS Acry_1477 NC_009484.1 1640696 1641409 D PFAM: glutamine amidotransferase class-I; peptidase C26; peptidase C26 1640696..1641409 Acidiphilium cryptum JF-5 5160053 YP_001234605.1 CDS Acry_1478 NC_009484.1 1641406 1642149 D PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RNA-binding S4 domain-containing protein 1641406..1642149 Acidiphilium cryptum JF-5 5160475 YP_001234606.1 CDS Acry_1479 NC_009484.1 1642146 1642703 D TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; putative methyltransferase 1642146..1642703 Acidiphilium cryptum JF-5 5162463 YP_001234607.1 CDS Acry_1480 NC_009484.1 1642710 1643408 R hypothetical protein complement(1642710..1643408) Acidiphilium cryptum JF-5 5162464 YP_001234608.1 CDS Acry_1481 NC_009484.1 1643411 1644769 R PFAM: ABC-1 domain protein; hypothetical protein complement(1643411..1644769) Acidiphilium cryptum JF-5 5160222 YP_001234609.1 CDS Acry_1482 NC_009484.1 1644786 1646633 R TIGRFAM: oligoendopeptidase, pepF/M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; Oligopeptidase F; pepF/M3 family oligoendopeptidase complement(1644786..1646633) Acidiphilium cryptum JF-5 5161808 YP_001234610.1 CDS Acry_1483 NC_009484.1 1646732 1647553 D PFAM: protein of unknown function DUF519; hypothetical protein 1646732..1647553 Acidiphilium cryptum JF-5 5161809 YP_001234611.1 CDS Acry_1484 NC_009484.1 1647550 1648515 D PFAM: NADP oxidoreductase, coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; NAD-dependent glycerol-3-phosphate dehydrogenase domain-containing protein 1647550..1648515 Acidiphilium cryptum JF-5 5159742 YP_001234612.1 CDS Acry_1485 NC_009484.1 1648523 1649230 R TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase complement(1648523..1649230) Acidiphilium cryptum JF-5 5161979 YP_001234613.1 CDS Acry_1486 NC_009484.1 1649236 1649421 R hypothetical protein complement(1649236..1649421) Acidiphilium cryptum JF-5 5161980 YP_001234614.1 CDS Acry_1487 NC_009484.1 1649474 1651864 D PFAM: MscS Mechanosensitive ion channel; mechanosensitive ion channel MscS 1649474..1651864 Acidiphilium cryptum JF-5 5159635 YP_001234615.1 CDS Acry_1488 NC_009484.1 1651917 1652642 D hypothetical protein 1651917..1652642 Acidiphilium cryptum JF-5 5160085 YP_001234616.1 CDS Acry_1489 NC_009484.1 1652650 1653657 R CysK; forms a complex with serine acetyltransferase CysE; functions in cysteine biosynthesis; cysteine synthase A complement(1652650..1653657) Acidiphilium cryptum JF-5 5160086 YP_001234617.1 CDS Acry_1490 NC_009484.1 1653751 1654161 D SMART: Rhodanese domain protein; rhodanese domain-containing protein 1653751..1654161 Acidiphilium cryptum JF-5 5159718 YP_001234618.1 CDS Acry_1491 NC_009484.1 1654243 1655472 D PFAM: major facilitator superfamily MFS_1; major facilitator transporter 1654243..1655472 Acidiphilium cryptum JF-5 5160102 YP_001234619.1 CDS Acry_1492 NC_009484.1 1655516 1656301 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; methionine aminopeptidase 1655516..1656301 Acidiphilium cryptum JF-5 5160103 YP_001234620.1 CDS Acry_1493 NC_009484.1 1656346 1657113 D PFAM: DNA repair protein RadC; DNA repair protein RadC 1656346..1657113 Acidiphilium cryptum JF-5 5159970 YP_001234621.1 CDS Acry_1494 NC_009484.1 1657108 1657881 R PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase complement(1657108..1657881) Acidiphilium cryptum JF-5 5159514 YP_001234622.1 CDS Acry_1495 NC_009484.1 1657999 1658652 D PFAM: phosphoribosyltransferase; phosphoribosyltransferase 1657999..1658652 Acidiphilium cryptum JF-5 5159515 YP_001234623.1 CDS Acry_1496 NC_009484.1 1658715 1658972 D TIGRFAM: glutaredoxin 3; PFAM: glutaredoxin; glutaredoxin 3 1658715..1658972 Acidiphilium cryptum JF-5 5160184 YP_001234624.1 CDS Acry_1497 NC_009484.1 1658969 1659424 D PFAM: protein of unknown function DUF1178; hypothetical protein 1658969..1659424 Acidiphilium cryptum JF-5 5159901 YP_001234625.1 CDS Acry_1498 NC_009484.1 1659441 1659983 D carbonic anhydrase 1659441..1659983 Acidiphilium cryptum JF-5 5159902 YP_001234626.1 CDS Acry_1499 NC_009484.1 1660013 1660600 D hypothetical protein 1660013..1660600 Acidiphilium cryptum JF-5 5159505 YP_001234627.1 CDS Acry_1500 NC_009484.1 1660660 1662069 R PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; hypothetical protein complement(1660660..1662069) Acidiphilium cryptum JF-5 5160121 YP_001234628.1 CDS Acry_1501 NC_009484.1 1662261 1663646 D TIGRFAM: isocitrate lyase; PFAM: isocitrate lyase and phosphorylmutase; isocitrate lyase 1662261..1663646 Acidiphilium cryptum JF-5 5160122 YP_001234629.1 CDS Acry_1502 NC_009484.1 1663732 1664775 R PFAM: helix-hairpin-helix motif; HhH-GPD family protein; HhH-GPD family protein complement(1663732..1664775) Acidiphilium cryptum JF-5 5159866 YP_001234630.1 CDS Acry_1503 NC_009484.1 1664772 1665263 R hypothetical protein complement(1664772..1665263) Acidiphilium cryptum JF-5 5160160 YP_001234631.1 CDS Acry_1504 NC_009484.1 1665269 1668016 R TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; 3'-5' exonuclease; SMART: Helix-hairpin-helix domain protein, class 2; DNA polymerase I complement(1665269..1668016) Acidiphilium cryptum JF-5 5160161 YP_001234632.1 CDS Acry_1505 NC_009484.1 1668013 1668240 R hypothetical protein complement(1668013..1668240) Acidiphilium cryptum JF-5 5159871 YP_001234633.1 CDS Acry_1506 NC_009484.1 1668781 1669056 D hypothetical protein 1668781..1669056 Acidiphilium cryptum JF-5 5162510 YP_001234634.1 CDS dcd NC_009484.1 1669047 1669601 D Catalyzes the formation of dUTP from dCTP in thymidylate biosynthesis; deoxycytidine triphosphate deaminase 1669047..1669601 Acidiphilium cryptum JF-5 5160590 YP_001234635.1 CDS Acry_1508 NC_009484.1 1669608 1670864 D adds enolpyruvyl to UDP-N-acetylglucosamine as a component of cell wall formation; gram-positive bacteria have 2 copies of MurA which are active; UDP-N-acetylglucosamine 1-carboxyvinyltransferase 1669608..1670864 Acidiphilium cryptum JF-5 5160297 YP_001234636.1 CDS Acry_1509 NC_009484.1 1670801 1672075 R PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; cyclopropane-fatty-acyl-phospholipid synthase complement(1670801..1672075) Acidiphilium cryptum JF-5 5160424 YP_001234637.1 CDS Acry_1510 NC_009484.1 1672239 1672799 R PFAM: ribosomal protein L9; 50S ribosomal protein L9 complement(1672239..1672799) Acidiphilium cryptum JF-5 5160425 YP_001234638.1 CDS rpsR NC_009484.1 1672812 1673099 R binds as a heterodimer with protein S6 to the central domain of the 16S rRNA; helps stabilize the platform of the 30S subunit; 30S ribosomal protein S18 complement(1672812..1673099) Acidiphilium cryptum JF-5 5160451 YP_001234639.1 CDS rpsF NC_009484.1 1673103 1673579 R binds cooperatively with S18 to the S15-16S complex, allowing platform assembly to continue with S11 and S21; 30S ribosomal protein S6 complement(1673103..1673579) Acidiphilium cryptum JF-5 5160277 YP_001234640.1 CDS Acry_1513 NC_009484.1 1673725 1674024 R PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(1673725..1674024) Acidiphilium cryptum JF-5 5160278 YP_001234641.1 CDS Acry_1514 NC_009484.1 1674040 1676028 R PFAM: biotin/lipoyl attachment domain-containing protein; phosphoribosylglycinamide synthetase; ATP-dependent carboxylate-amine ligase domain protein, ATP-grasp; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; carbamoyl-phosphate synthase subunit L complement(1674040..1676028) Acidiphilium cryptum JF-5 5160490 YP_001234642.1 CDS Acry_1515 NC_009484.1 1676034 1676822 R PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1676034..1676822) Acidiphilium cryptum JF-5 5160517 YP_001234643.1 CDS Acry_1516 NC_009484.1 1676827 1678434 R PFAM: carboxyl transferase; propionyl-CoA carboxylase complement(1676827..1678434) Acidiphilium cryptum JF-5 5160518 YP_001234644.1 CDS Acry_1517 NC_009484.1 1678331 1679254 R PFAM: glycosyl transferase WecB/TagA/CpsF; WecB/TagA/CpsF glycosyl transferase complement(1678331..1679254) Acidiphilium cryptum JF-5 5160627 YP_001234645.1 CDS Acry_1518 NC_009484.1 1679251 1680510 R hypothetical protein complement(1679251..1680510) Acidiphilium cryptum JF-5 5160785 YP_001234646.1 CDS Acry_1519 NC_009484.1 1680590 1681522 D PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 1680590..1681522 Acidiphilium cryptum JF-5 5160786 YP_001234647.1 CDS Acry_1520 NC_009484.1 1681519 1682514 D PFAM: acyltransferase 3; acyltransferase 3 1681519..1682514 Acidiphilium cryptum JF-5 5160702 YP_001234648.1 CDS Acry_1521 NC_009484.1 1682522 1682743 D hypothetical protein 1682522..1682743 Acidiphilium cryptum JF-5 5160754 YP_001234649.1 CDS Acry_1522 NC_009484.1 1682701 1684065 R hypothetical protein complement(1682701..1684065) Acidiphilium cryptum JF-5 5160755 YP_001234650.1 CDS Acry_1523 NC_009484.1 1684073 1686229 R PFAM: lipopolysaccharide biosynthesis protein; non-specific protein-tyrosine kinase complement(1684073..1686229) Acidiphilium cryptum JF-5 5160860 YP_001234651.1 CDS Acry_1524 NC_009484.1 1686368 1686958 D PFAM: polysaccharide export protein; polysaccharide export protein 1686368..1686958 Acidiphilium cryptum JF-5 5160822 YP_001234652.1 CDS Acry_1525 NC_009484.1 1687107 1688066 D TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: acyl transferase domain protein; malonyl CoA-acyl carrier protein transacylase 1687107..1688066 Acidiphilium cryptum JF-5 5160823 YP_001234653.1 CDS Acry_1526 NC_009484.1 1688056 1688805 D TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; 3-oxoacyl-(acyl-carrier-protein) reductase 1688056..1688805 Acidiphilium cryptum JF-5 5160799 YP_001234654.1 CDS acpP NC_009484.1 1688985 1689224 D carries the fatty acid chain in fatty acid biosynthesis; acyl carrier protein 1688985..1689224 Acidiphilium cryptum JF-5 5160940 YP_001234655.1 CDS Acry_1528 NC_009484.1 1689244 1690512 D FabF; beta-ketoacyl-ACP synthase II, KASII; catalyzes a condensation reaction in fatty acid biosynthesis: addition of an acyl acceptor of two carbons from malonyl-ACP; required for the elongation of short-chain unsaturated acyl-ACP; 3-oxoacyl-(acyl carrier protein) synthase II 1689244..1690512 Acidiphilium cryptum JF-5 5160941 YP_001234656.1 CDS Acry_1529 NC_009484.1 1690530 1691525 D PFAM: aminodeoxychorismate lyase; aminodeoxychorismate lyase 1690530..1691525 Acidiphilium cryptum JF-5 5160920 YP_001234657.1 CDS Acry_1530 NC_009484.1 1691636 1693570 D TIGRFAM: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase 1691636..1693570 Acidiphilium cryptum JF-5 5160777 YP_001234658.1 CDS Acry_1531 NC_009484.1 1693567 1694682 D dapE-encoded N-succinyl-L,L-diaminopimelic acid desuccinylase (DapE), catalyzes the hydrolysis of N-succinyl-L,Ldiaminopimelate L,L-SDAP to L,L-diaminopimelate and succinate. It is a metalloprotease containing dinuclear active sites. Its structure is similar to the carboxypeptidase G2 from Pseudomonas sp. strain RS-16 and the aminopeptidase from Aeromonas proteolytica.; succinyl-diaminopimelate desuccinylase 1693567..1694682 Acidiphilium cryptum JF-5 5160778 YP_001234659.1 CDS Acry_1532 NC_009484.1 1694679 1695284 D hypothetical protein 1694679..1695284 Acidiphilium cryptum JF-5 5160898 YP_001234660.1 CDS Acry_1533 NC_009484.1 1695259 1696158 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrin-III C/tetrapyrrole methyltransferase complement(1695259..1696158) Acidiphilium cryptum JF-5 5160950 YP_001234661.1 CDS Acry_1534 NC_009484.1 1696221 1697429 D putative lipoprotein-like protein 1696221..1697429 Acidiphilium cryptum JF-5 5160951 YP_001234662.1 CDS Acry_1535 NC_009484.1 1697440 1698819 D PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 1697440..1698819 Acidiphilium cryptum JF-5 5160938 YP_001234663.1 CDS Acry_1536 NC_009484.1 1698972 1699859 D TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; cation diffusion facilitator family transporter 1698972..1699859 Acidiphilium cryptum JF-5 5160388 YP_001234664.1 CDS Acry_1537 NC_009484.1 1699870 1700427 D TIGRFAM: ATP--cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; ATP--cobalamin adenosyltransferase 1699870..1700427 Acidiphilium cryptum JF-5 5160389 YP_001234665.1 CDS Acry_1538 NC_009484.1 1700447 1700839 R hypothetical protein complement(1700447..1700839) Acidiphilium cryptum JF-5 5160917 YP_001234666.1 CDS Acry_1539 NC_009484.1 1701085 1701756 D PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1701085..1701756 Acidiphilium cryptum JF-5 5160995 YP_001234667.1 CDS Acry_1540 NC_009484.1 1701753 1702649 D hypothetical protein 1701753..1702649 Acidiphilium cryptum JF-5 5160996 YP_001234668.1 CDS Acry_1541 NC_009484.1 1702750 1703730 D TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; quinolinate synthetase complex subunit A 1702750..1703730 Acidiphilium cryptum JF-5 5161151 YP_001234669.1 CDS Acry_1542 NC_009484.1 1703730 1705235 D PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; L-aspartate oxidase 1703730..1705235 Acidiphilium cryptum JF-5 5161066 YP_001234670.1 CDS Acry_1543 NC_009484.1 1705232 1706077 D catalyzes the formation of pyridine-2,3-dicarboxylate and 5-phospho-alpha-D-ribose 1-diphosphate from nictinate D-ribonucleotide; nicotinate-nucleotide pyrophosphorylase 1705232..1706077 Acidiphilium cryptum JF-5 5161067 YP_001234671.1 CDS Acry_1544 NC_009484.1 1706084 1706566 D hypothetical protein 1706084..1706566 Acidiphilium cryptum JF-5 5162385 YP_001234672.1 CDS Acry_1545 NC_009484.1 1706668 1706973 D hypothetical protein 1706668..1706973 Acidiphilium cryptum JF-5 5161147 YP_001234673.1 CDS Acry_1546 NC_009484.1 1706986 1707744 R PFAM: molybdopterin binding domain; molybdopterin binding domain-containing protein complement(1706986..1707744) Acidiphilium cryptum JF-5 5161148 YP_001234674.1 CDS Acry_1547 NC_009484.1 1707759 1708763 R PFAM: NUDIX hydrolase; GCN5-related N-acetyltransferase; NUDIX hydrolase complement(1707759..1708763) Acidiphilium cryptum JF-5 5161266 YP_001234675.1 CDS proA NC_009484.1 1708867 1710129 D Catalyzes the phosphorylation of L-glutamate during the proline biosynthesis pathway; gamma-glutamyl phosphate reductase 1708867..1710129 Acidiphilium cryptum JF-5 5161093 YP_001234676.1 CDS Acry_1551 NC_009484.1 1711282 1711758 D PFAM: protein of unknown function DUF163; hypothetical protein 1711282..1711758 Acidiphilium cryptum JF-5 5161843 YP_001234677.1 CDS Acry_1552 NC_009484.1 1711945 1714788 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; PAS/PAC and GAF sensor-containing diguanylate cyclase/phosphodiesterase complement(1711945..1714788) Acidiphilium cryptum JF-5 5161830 YP_001234678.1 CDS Acry_1553 NC_009484.1 1714785 1715771 R TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAS/PAC sensor-containing diguanylate cyclase complement(1714785..1715771) Acidiphilium cryptum JF-5 5161257 YP_001234679.1 CDS Acry_1554 NC_009484.1 1715912 1716631 R hypothetical protein complement(1715912..1716631) Acidiphilium cryptum JF-5 5161258 YP_001234680.1 CDS Acry_1555 NC_009484.1 1716661 1717017 R hypothetical protein complement(1716661..1717017) Acidiphilium cryptum JF-5 5161420 YP_001234681.1 CDS Acry_1556 NC_009484.1 1717182 1718342 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 1717182..1718342 Acidiphilium cryptum JF-5 5161404 YP_001234682.1 CDS Acry_1557 NC_009484.1 1718418 1719080 D PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 1718418..1719080 Acidiphilium cryptum JF-5 5161405 YP_001234683.1 CDS Acry_1558 NC_009484.1 1719110 1719916 D PFAM: Phytanoyl-CoA dioxygenase; phytanoyl-CoA dioxygenase 1719110..1719916 Acidiphilium cryptum JF-5 5161399 YP_001234684.1 CDS Acry_1559 NC_009484.1 1719921 1721264 D PFAM: oxidoreductase domain protein; SAF domain; SAF domain-containing protein 1719921..1721264 Acidiphilium cryptum JF-5 5160903 YP_001234685.1 CDS Acry_1560 NC_009484.1 1721332 1722666 D TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; oxygen-independent coproporphyrinogen III oxidase 1721332..1722666 Acidiphilium cryptum JF-5 5160904 YP_001234686.1 CDS Acry_1561 NC_009484.1 1722673 1724976 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase complement(1722673..1724976) Acidiphilium cryptum JF-5 5161381 YP_001234687.1 CDS Acry_1562 NC_009484.1 1725194 1725724 R PFAM: DinB family protein; DinB family protein complement(1725194..1725724) Acidiphilium cryptum JF-5 5161532 YP_001234688.1 CDS Acry_1563 NC_009484.1 1725865 1726302 R cytochrome c-like protein complement(1725865..1726302) Acidiphilium cryptum JF-5 5161533 YP_001234689.1 CDS Acry_1564 NC_009484.1 1726476 1727150 R S-isoprenylcysteine methyltransferase-like protein complement(1726476..1727150) Acidiphilium cryptum JF-5 5161525 YP_001234690.1 CDS Acry_1565 NC_009484.1 1727450 1727749 D hypothetical protein 1727450..1727749 Acidiphilium cryptum JF-5 5161421 YP_001234691.1 CDS Acry_1566 NC_009484.1 1727711 1727953 R hypothetical protein complement(1727711..1727953) Acidiphilium cryptum JF-5 5161422 YP_001234692.1 CDS Acry_1567 NC_009484.1 1728165 1729016 D TIGRFAM: methyltransferase FkbM family; FkbM family methyltransferase 1728165..1729016 Acidiphilium cryptum JF-5 5161459 YP_001234693.1 CDS Acry_1568 NC_009484.1 1729087 1729782 R PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(1729087..1729782) Acidiphilium cryptum JF-5 5161621 YP_001234694.1 CDS Acry_1569 NC_009484.1 1729995 1730420 D PFAM: cytochrome c, class I; cytochrome c, class I 1729995..1730420 Acidiphilium cryptum JF-5 5161622 YP_001234695.1 CDS Acry_1570 NC_009484.1 1730488 1732194 D PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 1730488..1732194 Acidiphilium cryptum JF-5 5161712 YP_001234696.1 CDS Acry_1571 NC_009484.1 1732264 1732575 R hypothetical protein complement(1732264..1732575) Acidiphilium cryptum JF-5 5161747 YP_001234697.1 CDS Acry_1572 NC_009484.1 1733001 1734230 D PFAM: acyltransferase 3; acyltransferase 3 1733001..1734230 Acidiphilium cryptum JF-5 5161748 YP_001234698.1 CDS Acry_1573 NC_009484.1 1734639 1736438 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 1734639..1736438 Acidiphilium cryptum JF-5 5161910 YP_001234699.1 CDS Acry_1574 NC_009484.1 1736457 1737764 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 1736457..1737764 Acidiphilium cryptum JF-5 5161682 YP_001234700.1 CDS Acry_1575 NC_009484.1 1737777 1738568 D PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1737777..1738568 Acidiphilium cryptum JF-5 5161683 YP_001234701.1 CDS Acry_1576 NC_009484.1 1738609 1739781 D TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 1738609..1739781 Acidiphilium cryptum JF-5 5161560 YP_001234702.1 CDS Acry_1577 NC_009484.1 1739778 1740242 D PFAM: MaoC domain protein dehydratase; dehydratase 1739778..1740242 Acidiphilium cryptum JF-5 5161702 YP_001234703.1 CDS Acry_1578 NC_009484.1 1740327 1741307 D PFAM: aldo/keto reductase; aldo/keto reductase 1740327..1741307 Acidiphilium cryptum JF-5 5161703 YP_001234704.1 CDS Acry_1579 NC_009484.1 1741350 1742846 R ATPase-like protein complement(1741350..1742846) Acidiphilium cryptum JF-5 5161457 YP_001234705.1 CDS Acry_1580 NC_009484.1 1743185 1743907 R PFAM: cyclic nucleotide-binding; SMART: regulatory protein, Crp; CRP/FNR family transcriptional regulator complement(1743185..1743907) Acidiphilium cryptum JF-5 5161770 YP_001234706.1 CDS Acry_1581 NC_009484.1 1744052 1747786 D TIGRFAM: nitrate reductase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; nitrate reductase subunit alpha 1744052..1747786 Acidiphilium cryptum JF-5 5161771 YP_001234707.1 CDS Acry_1582 NC_009484.1 1747786 1749312 D TIGRFAM: nitrate reductase, beta subunit; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; nitrate reductase subunit beta 1747786..1749312 Acidiphilium cryptum JF-5 5161716 YP_001234708.1 CDS Acry_1583 NC_009484.1 1749320 1749976 D TIGRFAM: nitrate reductase molybdenum cofactor assembly chaperone; PFAM: Nitrate reductase, delta subunit; nitrate reductase molybdenum cofactor assembly chaperone 1749320..1749976 Acidiphilium cryptum JF-5 5161890 YP_001234709.1 CDS Acry_1584 NC_009484.1 1749973 1750689 D TIGRFAM: respiratory nitrate reductase, gamma subunit; PFAM: Nitrate reductase, gamma subunit; respiratory nitrate reductase subunit gamma 1749973..1750689 Acidiphilium cryptum JF-5 5161891 YP_001234710.1 CDS Acry_1585 NC_009484.1 1750686 1751432 D PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase 1750686..1751432 Acidiphilium cryptum JF-5 5161825 YP_001234711.1 CDS Acry_1586 NC_009484.1 1751429 1752775 D PFAM: major facilitator superfamily MFS_1; major facilitator transporter 1751429..1752775 Acidiphilium cryptum JF-5 5161887 YP_001234712.1 CDS Acry_1587 NC_009484.1 1752785 1753741 R methylglyoxal synthase-like protein complement(1752785..1753741) Acidiphilium cryptum JF-5 5161888 YP_001234713.1 CDS Acry_1588 NC_009484.1 1753992 1755659 D TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer 1753992..1755659 Acidiphilium cryptum JF-5 5161756 YP_001234714.1 CDS Acry_1589 NC_009484.1 1755654 1756700 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; alanine racemase complement(1755654..1756700) Acidiphilium cryptum JF-5 5160564 YP_001234715.1 CDS Acry_1590 NC_009484.1 1756712 1757740 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(1756712..1757740) Acidiphilium cryptum JF-5 5160565 YP_001234716.1 CDS Acry_1591 NC_009484.1 1757887 1758684 D PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1757887..1758684 Acidiphilium cryptum JF-5 5162197 YP_001234717.1 CDS Acry_1592 NC_009484.1 1758681 1759565 D PFAM: NADP oxidoreductase, coenzyme F420-dependent; 6-phosphogluconate dehydrogenase, NAD-binding; 2-hydroxy-3-oxopropionate reductase 1758681..1759565 Acidiphilium cryptum JF-5 5161936 YP_001234718.1 CDS Acry_1593 NC_009484.1 1759562 1761076 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1759562..1761076 Acidiphilium cryptum JF-5 5161937 YP_001234719.1 CDS Acry_1594 NC_009484.1 1761063 1762127 D PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 1761063..1762127 Acidiphilium cryptum JF-5 5161886 YP_001234720.1 CDS Acry_1595 NC_009484.1 1762124 1763230 D ABC-type sugar transport system periplasmic component-like protein 1762124..1763230 Acidiphilium cryptum JF-5 5161867 YP_001234721.1 CDS Acry_1596 NC_009484.1 1763188 1763595 R hypothetical protein complement(1763188..1763595) Acidiphilium cryptum JF-5 5161868 YP_001234722.1 CDS Acry_1597 NC_009484.1 1763732 1765174 R PFAM: Carbohydrate-selective porin OprB; carbohydrate-selective porin OprB complement(1763732..1765174) Acidiphilium cryptum JF-5 5162247 YP_001234723.1 CDS Acry_1598 NC_009484.1 1765299 1766669 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; general substrate transporter 1765299..1766669 Acidiphilium cryptum JF-5 5162219 YP_001234724.1 CDS Acry_1599 NC_009484.1 1766666 1767490 D PFAM: metallophosphoesterase; metallophosphoesterase 1766666..1767490 Acidiphilium cryptum JF-5 5162220 YP_001234725.1 CDS Acry_1600 NC_009484.1 1767512 1768294 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(1767512..1768294) Acidiphilium cryptum JF-5 5162189 YP_001234726.1 CDS Acry_1601 NC_009484.1 1768299 1769336 R ABC-type sugar transport system periplasmic component-like protein complement(1768299..1769336) Acidiphilium cryptum JF-5 5162144 YP_001234727.1 CDS Acry_1602 NC_009484.1 1769365 1770414 R PFAM: inner-membrane translocator; monosaccharide-transporting ATPase complement(1769365..1770414) Acidiphilium cryptum JF-5 5162145 YP_001234728.1 CDS Acry_1603 NC_009484.1 1770549 1771169 D hypothetical protein 1770549..1771169 Acidiphilium cryptum JF-5 5162065 YP_001234729.1 CDS Acry_1604 NC_009484.1 1771226 1772338 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase complement(1771226..1772338) Acidiphilium cryptum JF-5 5162133 YP_001234730.1 CDS Acry_1605 NC_009484.1 1772570 1773565 R TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: Radical SAM domain protein; molybdenum cofactor synthesis domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A complement(1772570..1773565) Acidiphilium cryptum JF-5 5162134 YP_001234731.1 CDS Acry_1606 NC_009484.1 1773741 1774328 D PFAM: protein of unknown function DUF1013; hypothetical protein 1773741..1774328 Acidiphilium cryptum JF-5 5162038 YP_001234732.1 CDS Acry_1607 NC_009484.1 1774438 1774605 R PFAM: protein of unknown function DUF465; hypothetical protein complement(1774438..1774605) Acidiphilium cryptum JF-5 5162021 YP_001234733.1 CDS Acry_1608 NC_009484.1 1774809 1775012 D PFAM: protein of unknown function DUF465; hypothetical protein 1774809..1775012 Acidiphilium cryptum JF-5 5162022 YP_001234734.1 CDS Acry_1609 NC_009484.1 1775033 1775503 D TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase catalytic subunit 1775033..1775503 Acidiphilium cryptum JF-5 5162006 YP_001234735.1 CDS Acry_1610 NC_009484.1 1775500 1776645 D With PurE catalyzes the conversion of aminoimidazole ribonucleotide to carboxyaminoimidazole ribonucleotide in the de novo purine nucleotide biosynthetic pathway; phosphoribosylaminoimidazole carboxylase ATPase subunit 1775500..1776645 Acidiphilium cryptum JF-5 5161963 YP_001234736.1 CDS Acry_1611 NC_009484.1 1776671 1778239 R PFAM: ATP dependent DNA ligase domain protein; ATP dependent DNA ligase; ATP dependent DNA ligase complement(1776671..1778239) Acidiphilium cryptum JF-5 5161964 YP_001234737.1 CDS Acry_1612 NC_009484.1 1778236 1779300 R RNA procession exonuclease-like protein complement(1778236..1779300) Acidiphilium cryptum JF-5 5162452 YP_001234738.1 CDS Acry_1613 NC_009484.1 1779310 1781739 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; DEAD/H associated domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 1779310..1781739 Acidiphilium cryptum JF-5 5161443 YP_001234739.1 CDS Acry_1614 NC_009484.1 1781756 1782433 D ICC-like phosphoesterase 1781756..1782433 Acidiphilium cryptum JF-5 5161444 YP_001234740.1 CDS Acry_1615 NC_009484.1 1782433 1783848 D PFAM: DNA photolyase, FAD-binding; DNA photolyase domain protein; deoxyribodipyrimidine photo-lyase 1782433..1783848 Acidiphilium cryptum JF-5 5161254 YP_001234741.1 CDS Acry_1616 NC_009484.1 1783845 1785125 D PFAM: amine oxidase; FAD dependent oxidoreductase; amine oxidase 1783845..1785125 Acidiphilium cryptum JF-5 5160901 YP_001234742.1 CDS Acry_1617 NC_009484.1 1785122 1785886 D PFAM: protein of unknown function DUF1365; hypothetical protein 1785122..1785886 Acidiphilium cryptum JF-5 5160902 YP_001234743.1 CDS Acry_1618 NC_009484.1 1785883 1787100 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; cyclopropane-fatty-acyl-phospholipid synthase 1785883..1787100 Acidiphilium cryptum JF-5 5162580 YP_001234744.1 CDS Acry_1619 NC_009484.1 1787113 1788423 D Na+/melibiose symporter and related transporter-like protein 1787113..1788423 Acidiphilium cryptum JF-5 5160828 YP_001234745.1 CDS Acry_1620 NC_009484.1 1788420 1789100 D PFAM: metallophosphoesterase; metallophosphoesterase 1788420..1789100 Acidiphilium cryptum JF-5 5160829 YP_001234746.1 CDS Acry_1621 NC_009484.1 1789181 1790572 R TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; FAD dependent oxidoreductase; dihydrolipoamide dehydrogenase complement(1789181..1790572) Acidiphilium cryptum JF-5 5159520 YP_001234747.1 CDS Acry_1622 NC_009484.1 1790583 1791815 R TIGRFAM: 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; 2-oxoglutarate dehydrogenase, E2 subunit, dihydrolipoamide succinyltransferase complement(1790583..1791815) Acidiphilium cryptum JF-5 5160551 YP_001234748.1 CDS Acry_1623 NC_009484.1 1791848 1794697 R TIGRFAM: 2-oxoglutarate dehydrogenase, E1 subunit; PFAM: dehydrogenase, E1 component; Transketolase, central region; 2-oxoglutarate dehydrogenase, E1 subunit complement(1791848..1794697) Acidiphilium cryptum JF-5 5160552 YP_001234749.1 CDS Acry_1624 NC_009484.1 1794888 1795763 R TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: CoA-binding domain protein; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit alpha complement(1794888..1795763) Acidiphilium cryptum JF-5 5160065 YP_001234750.1 CDS Acry_1625 NC_009484.1 1795763 1796959 R TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; ATP-grasp domain protein; succinyl-CoA synthetase subunit beta complement(1795763..1796959) Acidiphilium cryptum JF-5 5159941 YP_001234751.1 CDS Acry_1626 NC_009484.1 1797082 1798197 R PFAM: AFG1-family ATPase; AFG1 family ATPase complement(1797082..1798197) Acidiphilium cryptum JF-5 5159942 YP_001234752.1 CDS Acry_1627 NC_009484.1 1798288 1798614 R hypothetical protein complement(1798288..1798614) Acidiphilium cryptum JF-5 5162307 YP_001234753.1 CDS Acry_1628 NC_009484.1 1798629 1800002 D PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltranspeptidase 1798629..1800002 Acidiphilium cryptum JF-5 5161540 YP_001234754.1 CDS Acry_1629 NC_009484.1 1800010 1801179 D PFAM: aminotransferase, class I and II; class I and II aminotransferase 1800010..1801179 Acidiphilium cryptum JF-5 5161541 YP_001234755.1 CDS Acry_1630 NC_009484.1 1801187 1801888 R PFAM: CBS domain containing protein; transport-associated; SMART: Transport-associated and nodulation region, bacteria; signal-transduction protein complement(1801187..1801888) Acidiphilium cryptum JF-5 5159974 YP_001234756.1 CDS Acry_1631 NC_009484.1 1801974 1802906 R PFAM: cyclic nucleotide-binding; regulatory protein, Crp; CRP/FNR family transcriptional regulator complement(1801974..1802906) Acidiphilium cryptum JF-5 5159773 YP_001234757.1 CDS Acry_1632 NC_009484.1 1802939 1803397 D hypothetical protein 1802939..1803397 Acidiphilium cryptum JF-5 5159774 YP_001234758.1 CDS Acry_1633 NC_009484.1 1803619 1803828 R hypothetical protein complement(1803619..1803828) Acidiphilium cryptum JF-5 5159629 YP_001234759.1 CDS Acry_1634 NC_009484.1 1803846 1804985 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II complement(1803846..1804985) Acidiphilium cryptum JF-5 5160191 YP_001234760.1 CDS Acry_1635 NC_009484.1 1804998 1806611 R PFAM: cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(1804998..1806611) Acidiphilium cryptum JF-5 5160192 YP_001234761.1 CDS Acry_1636 NC_009484.1 1806732 1808486 R TIGRFAM: Beta tubulin, autoregulation binding site; PFAM: ABC transporter related; SMART: AAA ATPase; Beta tubulin, autoregulation binding site complement(1806732..1808486) Acidiphilium cryptum JF-5 5159712 YP_001234762.1 CDS Acry_1637 NC_009484.1 1808474 1810243 R TIGRFAM: ABC transporter, transmembrane region, type 1; PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter complement(1808474..1810243) Acidiphilium cryptum JF-5 5159644 YP_001234763.1 CDS Acry_1638 NC_009484.1 1810426 1811736 D PFAM: Cl- channel, voltage-gated family protein; Cl- channel, voltage-gated family protein 1810426..1811736 Acidiphilium cryptum JF-5 5159645 YP_001234764.1 CDS Acry_1639 NC_009484.1 1811813 1812316 D PFAM: OsmC family protein; OsmC family protein 1811813..1812316 Acidiphilium cryptum JF-5 5160057 YP_001234765.1 CDS Acry_1640 NC_009484.1 1812385 1813362 R Zn-dependent hydrolase of the beta-lactamase fold-like protein complement(1812385..1813362) Acidiphilium cryptum JF-5 5160418 YP_001234766.1 CDS Acry_1641 NC_009484.1 1813365 1814147 R PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(1813365..1814147) Acidiphilium cryptum JF-5 5160419 YP_001234767.1 CDS Acry_1642 NC_009484.1 1814231 1815448 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1814231..1815448 Acidiphilium cryptum JF-5 5160045 YP_001234768.1 CDS Acry_1643 NC_009484.1 1815506 1816519 R TIGRFAM: TonB family protein; PFAM: Gram-negative tonB protein; TonB family protein complement(1815506..1816519) Acidiphilium cryptum JF-5 5160213 YP_001234769.1 CDS Acry_1645 NC_009484.1 1817014 1818165 R chaperone Hsp40; co-chaperone with DnaK; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, dnaK-independent fashion; chaperone protein DnaJ complement(1817014..1818165) Acidiphilium cryptum JF-5 5161921 YP_001234770.1 CDS dnaK NC_009484.1 1818260 1820167 R heat shock protein 70; assists in folding of nascent polypeptide chains; refolding of misfolded proteins; utilizes ATPase activity to help fold; co-chaperones are DnaJ and GrpE; multiple copies in some bacteria; molecular chaperone DnaK complement(1818260..1820167) Acidiphilium cryptum JF-5 5160770 YP_001234771.1 CDS Acry_1647 NC_009484.1 1820326 1820934 R PFAM: GrpE protein; GrpE protein HSP-70 cofactor complement(1820326..1820934) Acidiphilium cryptum JF-5 5160783 YP_001234772.1 CDS Acry_1648 NC_009484.1 1821062 1821346 D hypothetical protein 1821062..1821346 Acidiphilium cryptum JF-5 5160784 YP_001234773.1 CDS Acry_1649 NC_009484.1 1821333 1822097 R PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(1821333..1822097) Acidiphilium cryptum JF-5 5160707 YP_001234774.1 CDS Acry_1650 NC_009484.1 1822094 1822840 R hypothetical protein complement(1822094..1822840) Acidiphilium cryptum JF-5 5160763 YP_001234775.1 CDS Acry_1651 NC_009484.1 1822837 1823406 R hypothetical protein complement(1822837..1823406) Acidiphilium cryptum JF-5 5160764 YP_001234776.1 CDS Acry_1652 NC_009484.1 1823418 1824377 D catalyzes the formation of O-phospho-L-homoserine from L-homoserine; homoserine kinase 1823418..1824377 Acidiphilium cryptum JF-5 5160934 YP_001234777.1 CDS rnhA NC_009484.1 1824367 1824849 D An endonuclease that specifically degrades the RNA strand of RNA-DNA hybrids; ribonuclease H 1824367..1824849 Acidiphilium cryptum JF-5 5162400 YP_001234778.1 CDS Acry_1654 NC_009484.1 1824868 1825611 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(1824868..1825611) Acidiphilium cryptum JF-5 5162401 YP_001234779.1 CDS Acry_1655 NC_009484.1 1825623 1826708 R PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein complement(1825623..1826708) Acidiphilium cryptum JF-5 5160547 YP_001234780.1 CDS Acry_1656 NC_009484.1 1826725 1827546 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(1826725..1827546) Acidiphilium cryptum JF-5 5161185 YP_001234781.1 CDS Acry_1657 NC_009484.1 1827549 1828547 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(1827549..1828547) Acidiphilium cryptum JF-5 5161186 YP_001234782.1 CDS Acry_1658 NC_009484.1 1828564 1829913 R PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(1828564..1829913) Acidiphilium cryptum JF-5 5161428 YP_001234783.1 CDS Acry_1659 NC_009484.1 1830012 1831031 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(1830012..1831031) Acidiphilium cryptum JF-5 5160413 YP_001234784.1 CDS Acry_1660 NC_009484.1 1831044 1832534 R PFAM: carbohydrate kinase, FGGY; carbohydrate kinase complement(1831044..1832534) Acidiphilium cryptum JF-5 5160414 YP_001234785.1 CDS Acry_1661 NC_009484.1 1832575 1833612 R PFAM: putative sugar-binding domain protein; DeoR family transcriptional regulator complement(1832575..1833612) Acidiphilium cryptum JF-5 5161513 YP_001234786.1 CDS Acry_1662 NC_009484.1 1833759 1834199 R PFAM: MaoC domain protein dehydratase; dehydratase complement(1833759..1834199) Acidiphilium cryptum JF-5 5160481 YP_001234787.1 CDS hrcA NC_009484.1 1834196 1835299 R Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons; heat-inducible transcription repressor complement(1834196..1835299) Acidiphilium cryptum JF-5 5160482 YP_001234788.1 CDS Acry_1664 NC_009484.1 1835366 1836097 D TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; ribonuclease PH 1835366..1836097 Acidiphilium cryptum JF-5 5161752 YP_001234789.1 CDS Acry_1665 NC_009484.1 1836105 1836692 D TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase 1836105..1836692 Acidiphilium cryptum JF-5 5161653 YP_001234790.1 CDS Acry_1666 NC_009484.1 1836708 1841246 R PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; glutamate synthase complement(1836708..1841246) Acidiphilium cryptum JF-5 5161654 YP_001234791.1 CDS Acry_1667 NC_009484.1 1841252 1842703 R function undetermined; similar to glutamate synthase beta subunit and related oxidoreductases which transfer electrons from NADPH to an acceptor protein or protein domain; putative oxidoreductase complement(1841252..1842703) Acidiphilium cryptum JF-5 5161799 YP_001234792.1 CDS Acry_1668 NC_009484.1 1842881 1843831 R PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; NmrA family protein; Male sterility C-terminal domain; NADH dehydrogenase (ubiquinone) complement(1842881..1843831) Acidiphilium cryptum JF-5 5161630 YP_001234793.1 CDS Acry_1669 NC_009484.1 1844106 1844762 D PFAM: 3'-5' exonuclease; 3'-5' exonuclease 1844106..1844762 Acidiphilium cryptum JF-5 5161911 YP_001234794.1 CDS Acry_1670 NC_009484.1 1844826 1845848 D TIGRFAM: KpsF/GutQ family protein; PFAM: CBS domain containing protein; sugar isomerase (SIS); KpsF/GutQ family protein 1844826..1845848 Acidiphilium cryptum JF-5 5161889 YP_001234795.1 CDS Acry_1671 NC_009484.1 1845845 1846585 D PFAM: protein of unknown function DUF1239; hypothetical protein 1845845..1846585 Acidiphilium cryptum JF-5 5162537 YP_001234796.1 CDS Acry_1672 NC_009484.1 1846582 1847553 D PFAM: OstA family protein; OstA family protein 1846582..1847553 Acidiphilium cryptum JF-5 5162538 YP_001234797.1 CDS Acry_1673 NC_009484.1 1847550 1848344 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1847550..1848344 Acidiphilium cryptum JF-5 5162260 YP_001234798.1 CDS Acry_1674 NC_009484.1 1848475 1849128 D the Ctc family of proteins consists of two types, one that contains the N-terminal ribosomal protein L25 domain only which in Escherichia coli binds the 5S rRNA while a subset of proteins contain a C-terminal extension that is involved in the stress response; 50S ribosomal protein L25/general stress protein Ctc 1848475..1849128 Acidiphilium cryptum JF-5 5162206 YP_001234799.1 CDS Acry_1675 NC_009484.1 1849147 1849725 D Enables the recycling of peptidyl-tRNAs produced at termination of translation; peptidyl-tRNA hydrolase 1849147..1849725 Acidiphilium cryptum JF-5 5162207 YP_001234800.1 CDS Acry_1676 NC_009484.1 1849727 1850821 D translation-associated GTPase; the crystal structure of the Haemophilus influenzae YchF protein showed similarity to the yeast structure (PDB: 1NI3); fluorescence spectroscopy revealed nucleic acid binding; the yeast protein YBR025c interacts with the translation elongation factor eEF1; GTP-dependent nucleic acid-binding protein EngD 1849727..1850821 Acidiphilium cryptum JF-5 5162059 YP_001234801.1 CDS Acry_1677 NC_009484.1 1850837 1852993 D binding of PriA to forked DNA starts the assembly of the primosome, also possesses 3'-5' helicase activity; primosome assembly protein PriA 1850837..1852993 Acidiphilium cryptum JF-5 5162114 YP_001234802.1 CDS Acry_1678 NC_009484.1 1853148 1853741 D TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+-transporting two-sector ATPase, delta (OSCP) subunit; ATP synthase F1 subunit delta 1853148..1853741 Acidiphilium cryptum JF-5 5162115 YP_001234803.1 CDS Acry_1679 NC_009484.1 1853743 1855275 D produces ATP from ADP in the presence of a proton gradient across the membrane; the alpha chain is a catalytic subunit; F0F1 ATP synthase subunit alpha 1853743..1855275 Acidiphilium cryptum JF-5 5161916 YP_001234804.1 CDS Acry_1680 NC_009484.1 1855292 1856182 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is a regulatory subunit; F0F1 ATP synthase subunit gamma 1855292..1856182 Acidiphilium cryptum JF-5 5161325 YP_001234805.1 CDS Acry_1681 NC_009484.1 1856202 1857632 D Produces ATP from ADP in the presence of a proton gradient across the membrane. The beta chain is a regulatory subunit; F0F1 ATP synthase subunit beta 1856202..1857632 Acidiphilium cryptum JF-5 5161326 YP_001234806.1 CDS Acry_1682 NC_009484.1 1857637 1858050 D TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+-transporting two-sector ATPase, delta/epsilon subunit; ATP synthase F1 subunit epsilon 1857637..1858050 Acidiphilium cryptum JF-5 5160489 YP_001234807.1 CDS Acry_1683 NC_009484.1 1858127 1859638 D PFAM: Malonyl-CoA decarboxylase; malonyl-CoA decarboxylase 1858127..1859638 Acidiphilium cryptum JF-5 5160176 YP_001234808.1 CDS Acry_1684 NC_009484.1 1859729 1861033 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 1859729..1861033 Acidiphilium cryptum JF-5 5160177 YP_001234809.1 CDS Acry_1685 NC_009484.1 1861136 1863085 D TIGRFAM: squalene/oxidosqualene cyclase; squalene-hopene cyclase; PFAM: Prenyltransferase/squalene oxidase; squalene-hopene cyclase 1861136..1863085 Acidiphilium cryptum JF-5 5162584 YP_001234810.1 CDS Acry_1686 NC_009484.1 1863275 1864246 R TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; peptide chain release factor 2 complement(1863275..1864246) Acidiphilium cryptum JF-5 5161848 YP_001234811.1 CDS Acry_1687 NC_009484.1 1864451 1867078 R TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase, family 51; penicillin-binding protein, transpeptidase; 1A family penicillin-binding protein complement(1864451..1867078) Acidiphilium cryptum JF-5 5160289 YP_001234812.1 CDS Acry_1688 NC_009484.1 1867455 1868321 D TIGRFAM: methyltransferase FkbM family; FkbM family methyltransferase 1867455..1868321 Acidiphilium cryptum JF-5 5161909 YP_001234813.1 CDS Acry_1689 NC_009484.1 1868465 1869271 D PFAM: HpcH/HpaI aldolase; HpcH/HpaI aldolase 1868465..1869271 Acidiphilium cryptum JF-5 5160286 YP_001234814.1 CDS Acry_1690 NC_009484.1 1869360 1870364 D TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; TRAP dicarboxylate transporter subunit DctP 1869360..1870364 Acidiphilium cryptum JF-5 5160287 YP_001234815.1 CDS Acry_1691 NC_009484.1 1870519 1872216 D TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; TRAP C4-dicarboxylate transport system permease DctM subunit; TRAP C4-dicarboxylate transport system permease DctM 1870519..1872216 Acidiphilium cryptum JF-5 5160447 YP_001234816.1 CDS Acry_1692 NC_009484.1 1872244 1872993 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 1872244..1872993 Acidiphilium cryptum JF-5 5160491 YP_001234817.1 CDS Acry_1693 NC_009484.1 1873101 1874249 R catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III; coproporphyrinogen III oxidase complement(1873101..1874249) Acidiphilium cryptum JF-5 5160492 YP_001234818.1 CDS rpsB NC_009484.1 1874451 1875221 D one of the last subunits in the assembly of the 30S subunit; absence of S2 does not inhibit assembly but results in an inactive subunit; 30S ribosomal protein S2 1874451..1875221 Acidiphilium cryptum JF-5 5160960 YP_001234819.1 CDS tsf NC_009484.1 1875294 1876199 D EF-Ts; functions during elongation stage of protein translation; forms a dimer; associates with EF-Tu-GDP complex and promotes exchange of GDP to GTP resulting in regeneration of the active form of EF-Tu; elongation factor Ts 1875294..1876199 Acidiphilium cryptum JF-5 5161228 YP_001234820.1 CDS Acry_1697 NC_009484.1 1876873 1878648 R TIGRFAM: PAS sensor protein; PFAM: chemotaxis sensory transducer; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein; methyl-accepting chemotaxis sensory transducer complement(1876873..1878648) Acidiphilium cryptum JF-5 5161900 YP_001234821.1 CDS Acry_1698 NC_009484.1 1878842 1879243 D PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein 1878842..1879243 Acidiphilium cryptum JF-5 5161813 YP_001234822.1 CDS Acry_1699 NC_009484.1 1879468 1881201 D hypothetical protein 1879468..1881201 Acidiphilium cryptum JF-5 5162193 YP_001234823.1 CDS Acry_1700 NC_009484.1 1881282 1884797 R TIGRFAM: methionine synthase; PFAM: dihydropteroate synthase, DHPS; homocysteine S-methyltransferase; Methionine synthase, B12-binding module, cap domain protein; Vitamin B12 dependent methionine synthase, activation region; cobalamin B12-binding domain protein; methionine synthase complement(1881282..1884797) Acidiphilium cryptum JF-5 5162194 YP_001234824.1 CDS Acry_1701 NC_009484.1 1884875 1885867 D PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 1884875..1885867 Acidiphilium cryptum JF-5 5162460 YP_001234825.1 CDS Acry_1702 NC_009484.1 1885849 1886613 R PFAM: protein of unknown function DUF81; hypothetical protein complement(1885849..1886613) Acidiphilium cryptum JF-5 5161965 YP_001234826.1 CDS Acry_1703 NC_009484.1 1886749 1887192 D hypothetical protein 1886749..1887192 Acidiphilium cryptum JF-5 5161966 YP_001234827.1 CDS Acry_1704 NC_009484.1 1887349 1887666 D hypothetical protein 1887349..1887666 Acidiphilium cryptum JF-5 5161065 YP_001234828.1 CDS Acry_1705 NC_009484.1 1887663 1888214 D hypothetical protein 1887663..1888214 Acidiphilium cryptum JF-5 5162582 YP_001234829.1 CDS Acry_1706 NC_009484.1 1888251 1888817 D Involved in peptide bond synthesis; alters the affinity of the ribosome for aminoacyl-tRNA; elongation factor P 1888251..1888817 Acidiphilium cryptum JF-5 5162583 YP_001234830.1 CDS Acry_1707 NC_009484.1 1888872 1889699 D PFAM: inositol monophosphatase; inositol-phosphate phosphatase 1888872..1889699 Acidiphilium cryptum JF-5 5160360 YP_001234831.1 CDS Acry_1708 NC_009484.1 1889738 1890373 D hypothetical protein 1889738..1890373 Acidiphilium cryptum JF-5 5160062 YP_001234832.1 CDS Acry_1709 NC_009484.1 1890387 1891520 D hypothetical protein 1890387..1891520 Acidiphilium cryptum JF-5 5160063 YP_001234833.1 CDS Acry_1710 NC_009484.1 1891524 1892552 D PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein 1891524..1892552 Acidiphilium cryptum JF-5 5162527 YP_001234834.1 CDS Acry_1711 NC_009484.1 1892569 1894437 R TIGRFAM: cobalt chelatase, pCobT subunit; PFAM: Cobalt chelatase, CobT subunit; cobalt chelatase large subunit complement(1892569..1894437) Acidiphilium cryptum JF-5 5162505 YP_001234835.1 CDS Acry_1712 NC_009484.1 1894437 1895453 R TIGRFAM: cobalt chelatase, pCobS small subunit; PFAM: ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; cobalt chelatase small subunit complement(1894437..1895453) Acidiphilium cryptum JF-5 5162506 YP_001234836.1 CDS Acry_1713 NC_009484.1 1895516 1896079 R PFAM: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein complement(1895516..1896079) Acidiphilium cryptum JF-5 5160689 YP_001234837.1 CDS Acry_1714 NC_009484.1 1896099 1897715 D PFAM: major facilitator superfamily MFS_1; major facilitator transporter 1896099..1897715 Acidiphilium cryptum JF-5 5160440 YP_001234838.1 CDS Acry_1715 NC_009484.1 1897687 1898481 R PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1897687..1898481) Acidiphilium cryptum JF-5 5160441 YP_001234839.1 CDS Acry_1716 NC_009484.1 1898571 1899518 D PFAM: peptidase T2, asparaginase 2; peptidase T2, asparaginase 2 1898571..1899518 Acidiphilium cryptum JF-5 5161671 YP_001234840.1 CDS Acry_1717 NC_009484.1 1899595 1900638 D catalyzes the formation of 4-aspartyl phosphate from aspartate 4-semialdehyde; aspartate-semialdehyde dehydrogenase 1899595..1900638 Acidiphilium cryptum JF-5 5161283 YP_001234841.1 CDS Acry_1718 NC_009484.1 1900798 1901388 D TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein A; molybdopterin-guanine dinucleotide biosynthesis protein A 1900798..1901388 Acidiphilium cryptum JF-5 5161901 YP_001234842.1 CDS Acry_1719 NC_009484.1 1901382 1902020 D PFAM: multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein 1901382..1902020 Acidiphilium cryptum JF-5 5162556 YP_001234843.1 CDS Acry_1720 NC_009484.1 1902116 1902457 D TIGRFAM: integration host factor, beta subunit; PFAM: histone family protein DNA-binding protein; integration host factor subunit beta 1902116..1902457 Acidiphilium cryptum JF-5 5161309 YP_001234844.1 CDS Acry_1721 NC_009484.1 1902775 1903479 D TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase 1902775..1903479 Acidiphilium cryptum JF-5 5161310 YP_001234845.1 CDS Acry_1722 NC_009484.1 1903479 1904096 D PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); phosphoribosylanthranilate isomerase 1903479..1904096 Acidiphilium cryptum JF-5 5159940 YP_001234846.1 CDS Acry_1723 NC_009484.1 1904125 1904952 R Involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Acts as DNA glycosylase that recognizes and removes damaged bases; formamidopyrimidine-DNA glycosylase complement(1904125..1904952) Acidiphilium cryptum JF-5 5159646 YP_001234847.1 CDS Acry_1724 NC_009484.1 1904981 1905730 D TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; ubiquinone/menaquinone biosynthesis methyltransferase 1904981..1905730 Acidiphilium cryptum JF-5 5159647 YP_001234848.1 CDS Acry_1725 NC_009484.1 1905727 1906926 D TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase; PFAM: flavoprotein; DNA/pantothenate metabolism flavoprotein domain protein; phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase 1905727..1906926 Acidiphilium cryptum JF-5 5162363 YP_001234849.1 CDS dut NC_009484.1 1906923 1907387 D catalyzes the formation of dUMP from dUTP; deoxyuridine 5'-triphosphate nucleotidohydrolase 1906923..1907387 Acidiphilium cryptum JF-5 5162364 YP_001234850.1 CDS Acry_1727 NC_009484.1 1907384 1908181 R PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(1907384..1908181) Acidiphilium cryptum JF-5 5161476 YP_001234851.1 CDS Acry_1728 NC_009484.1 1908178 1909719 R PFAM: deoxyribodipyrimidine photolyase-related protein; deoxyribodipyrimidine photolyase-like protein complement(1908178..1909719) Acidiphilium cryptum JF-5 5162288 YP_001234852.1 CDS Acry_1729 NC_009484.1 1909719 1910357 R hypothetical protein complement(1909719..1910357) Acidiphilium cryptum JF-5 5162289 YP_001234853.1 CDS Acry_1730 NC_009484.1 1910525 1911043 D PFAM: Phosphoglycerate mutase; putative phosphohistidine phosphatase SixA 1910525..1911043 Acidiphilium cryptum JF-5 5162121 YP_001234854.1 CDS Acry_1731 NC_009484.1 1911187 1912506 D TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I 1911187..1912506 Acidiphilium cryptum JF-5 5162052 YP_001234855.1 CDS Acry_1732 NC_009484.1 1912609 1912956 D PFAM: regulatory protein, ArsR; regulatory protein ArsR 1912609..1912956 Acidiphilium cryptum JF-5 5162053 YP_001234856.1 CDS Acry_1733 NC_009484.1 1912987 1914054 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 1912987..1914054 Acidiphilium cryptum JF-5 5162156 YP_001234857.1 CDS Acry_1734 NC_009484.1 1914116 1914859 D PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1914116..1914859 Acidiphilium cryptum JF-5 5162198 YP_001234858.1 CDS Acry_1735 NC_009484.1 1914974 1915714 R PFAM: protein of unknown function DUF1555; hypothetical protein complement(1914974..1915714) Acidiphilium cryptum JF-5 5162199 YP_001234859.1 CDS Acry_1736 NC_009484.1 1915878 1916132 D hypothetical protein 1915878..1916132 Acidiphilium cryptum JF-5 5162228 YP_001234860.1 CDS Acry_1737 NC_009484.1 1916129 1916830 D hypothetical protein 1916129..1916830 Acidiphilium cryptum JF-5 5162215 YP_001234861.1 CDS Acry_1738 NC_009484.1 1916846 1917649 R PFAM: regulatory protein, LuxR; response regulator receiver protein complement(1916846..1917649) Acidiphilium cryptum JF-5 5162216 YP_001234862.1 CDS Acry_1739 NC_009484.1 1917922 1918362 R PFAM: cytochrome c, class I; cytochrome c, class I complement(1917922..1918362) Acidiphilium cryptum JF-5 5161705 YP_001234863.1 CDS Acry_1740 NC_009484.1 1918415 1919203 R hypothetical protein complement(1918415..1919203) Acidiphilium cryptum JF-5 5161565 YP_001234864.1 CDS Acry_1741 NC_009484.1 1919196 1920908 R PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone complement(1919196..1920908) Acidiphilium cryptum JF-5 5161566 YP_001234865.1 CDS Acry_1742 NC_009484.1 1920971 1921333 R PFAM: protein of unknown function DUF779; hypothetical protein complement(1920971..1921333) Acidiphilium cryptum JF-5 5160013 YP_001234866.1 CDS Acry_1743 NC_009484.1 1921363 1922895 R PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase complement(1921363..1922895) Acidiphilium cryptum JF-5 5161853 YP_001234867.1 CDS Acry_1744 NC_009484.1 1923192 1925150 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 1923192..1925150 Acidiphilium cryptum JF-5 5161854 YP_001234868.1 CDS Acry_1745 NC_009484.1 1925167 1926537 R catalyzes the deimination of N-formimino-L-glutamate to ammonia and N-formyl-L-glutamate; N-formimino-L-glutamate deiminase complement(1925167..1926537) Acidiphilium cryptum JF-5 5161557 YP_001234869.1 CDS Acry_1746 NC_009484.1 1926620 1927825 D TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3; imidazolonepropionase 1926620..1927825 Acidiphilium cryptum JF-5 5161989 YP_001234870.1 CDS Acry_1747 NC_009484.1 1927822 1929348 D catalyzes the degradation of histidine to urocanate and ammmonia; histidine ammonia-lyase 1927822..1929348 Acidiphilium cryptum JF-5 5161990 YP_001234871.1 CDS Acry_1748 NC_009484.1 1929345 1930178 D PFAM: N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase 1929345..1930178 Acidiphilium cryptum JF-5 5162268 YP_001234872.1 CDS Acry_1749 NC_009484.1 1930184 1931854 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 1930184..1931854 Acidiphilium cryptum JF-5 5159966 YP_001234873.1 CDS Acry_1750 NC_009484.1 1931858 1932622 R TIGRFAM: histidine utilization repressor; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator complement(1931858..1932622) Acidiphilium cryptum JF-5 5159967 YP_001234874.1 CDS Acry_1751 NC_009484.1 1932625 1933518 R PFAM: N-formylglutamate amidohydrolase; N-formylglutamate amidohydrolase complement(1932625..1933518) Acidiphilium cryptum JF-5 5161214 YP_001234875.1 CDS Acry_1752 NC_009484.1 1933600 1933944 D PFAM: protein of unknown function DUF74; hypothetical protein 1933600..1933944 Acidiphilium cryptum JF-5 5161645 YP_001234876.1 CDS Acry_1753 NC_009484.1 1933945 1934355 R hypothetical protein complement(1933945..1934355) Acidiphilium cryptum JF-5 5161646 YP_001234877.1 CDS Acry_1754 NC_009484.1 1934517 1937951 R TIGRFAM: transcription-repair coupling factor; PFAM: helicase domain protein; transcription factor CarD; TRCF domain protein; type III restriction enzyme, res subunit; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; transcription-repair coupling factor complement(1934517..1937951) Acidiphilium cryptum JF-5 5162367 YP_001234878.1 CDS Acry_1756 NC_009484.1 1938191 1940362 D PFAM: helicase domain protein; nucleic acid binding, OB-fold, tRNA/helicase-type; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 1938191..1940362 Acidiphilium cryptum JF-5 5161859 YP_001234879.1 CDS Acry_1757 NC_009484.1 1940359 1940793 D PFAM: NUDIX hydrolase; NUDIX hydrolase 1940359..1940793 Acidiphilium cryptum JF-5 5162579 YP_001234880.1 CDS Acry_1758 NC_009484.1 1940786 1941763 R in Escherichia coli this periplasmic enzyme was found to encode the periplasmic catalytic subunit of an oxidoreductase; sulfite oxidase activity not demonstrated; requires inner membrane anchor protein YedZ; putative sulfite oxidase subunit YedY complement(1940786..1941763) Acidiphilium cryptum JF-5 5162100 YP_001234881.1 CDS mazG NC_009484.1 1941863 1942645 D functions in degradation of stringent response intracellular messenger ppGpp; in Escherichia coli this gene is co-transcribed with the toxin/antitoxin genes mazEF; activity of MazG is inhibited by MazEF in vitro; ppGpp inhibits mazEF expression; MazG thus works in limiting the toxic activity of the MazF toxin induced during starvation; MazG also interacts with the GTPase protein Era; nucleoside triphosphate pyrophosphohydrolase 1941863..1942645 Acidiphilium cryptum JF-5 5160321 YP_001234882.1 CDS Acry_1760 NC_009484.1 1942680 1943513 R PFAM: inositol monophosphatase; inositol monophosphatase complement(1942680..1943513) Acidiphilium cryptum JF-5 5160322 YP_001234883.1 CDS Acry_1761 NC_009484.1 1943537 1944844 R PFAM: GTP-binding protein, HSR1-related; HSR1-like GTP-binding protein complement(1943537..1944844) Acidiphilium cryptum JF-5 5161157 YP_001234884.1 CDS Acry_1762 NC_009484.1 1944851 1945378 R TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein, core; RNA chaperone Hfq complement(1944851..1945378) Acidiphilium cryptum JF-5 5162271 YP_001234885.1 CDS Acry_1763 NC_009484.1 1945426 1946976 R hypothetical protein complement(1945426..1946976) Acidiphilium cryptum JF-5 5162272 YP_001234886.1 CDS mnmA NC_009484.1 1947117 1948154 R catalyzes a sulfuration reaction to synthesize 2-thiouridine at the U34 position of tRNAs; tRNA-specific 2-thiouridylase MnmA complement(1947117..1948154) Acidiphilium cryptum JF-5 5161789 YP_001234887.1 CDS Acry_1765 NC_009484.1 1948159 1948491 R PFAM: ferredoxin; ferredoxin complement(1948159..1948491) Acidiphilium cryptum JF-5 5161907 YP_001234888.1 CDS Acry_1766 NC_009484.1 1948546 1949688 R PFAM: aminotransferase, class V; class V aminotransferase complement(1948546..1949688) Acidiphilium cryptum JF-5 5161908 YP_001234889.1 CDS Acry_1767 NC_009484.1 1949675 1950442 R TIGRFAM: serine O-acetyltransferase; serine O-acetyltransferase complement(1949675..1950442) Acidiphilium cryptum JF-5 5161834 YP_001234890.1 CDS Acry_1768 NC_009484.1 1950885 1951550 D alpha/beta fold family hydrolase-like protein 1950885..1951550 Acidiphilium cryptum JF-5 5160819 YP_001234891.1 CDS Acry_1769 NC_009484.1 1951607 1952404 R PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; DeoR family transcriptional regulator complement(1951607..1952404) Acidiphilium cryptum JF-5 5160820 YP_001234892.1 CDS Acry_1770 NC_009484.1 1952645 1953094 R PFAM: ROSMUCR transcriptional regulator; MucR family transcriptional regulator complement(1952645..1953094) Acidiphilium cryptum JF-5 5161738 YP_001234893.1 CDS Acry_1771 NC_009484.1 1953254 1953517 D PFAM: SirA family protein; SirA family protein 1953254..1953517 Acidiphilium cryptum JF-5 5161792 YP_001234894.1 CDS Acry_1772 NC_009484.1 1953486 1953932 R TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; ribosomal-protein-alanine acetyltransferase complement(1953486..1953932) Acidiphilium cryptum JF-5 5161793 YP_001234895.1 CDS Acry_1773 NC_009484.1 1953929 1954600 R PFAM: peptidase M22, glycoprotease; peptidase M22, glycoprotease complement(1953929..1954600) Acidiphilium cryptum JF-5 5161786 YP_001234896.1 CDS Acry_1774 NC_009484.1 1954602 1955186 R PFAM: nitroreductase; hypothetical protein complement(1954602..1955186) Acidiphilium cryptum JF-5 5161573 YP_001234897.1 CDS Acry_1775 NC_009484.1 1955229 1955786 R PFAM: nitrogen-fixing NifU domain protein; NifU domain-containing protein complement(1955229..1955786) Acidiphilium cryptum JF-5 5161574 YP_001234898.1 CDS Acry_1776 NC_009484.1 1955991 1956497 D hypothetical protein 1955991..1956497 Acidiphilium cryptum JF-5 5161411 YP_001234899.1 CDS Acry_1777 NC_009484.1 1956507 1957214 R PFAM: Methyltransferase type 11; type 11 methyltransferase complement(1956507..1957214) Acidiphilium cryptum JF-5 5161577 YP_001234900.1 CDS Acry_1778 NC_009484.1 1957248 1957979 D PFAM: beta-lactamase domain protein; hydroxyacylglutathione hydrolase 1957248..1957979 Acidiphilium cryptum JF-5 5161578 YP_001234901.1 CDS Acry_1779 NC_009484.1 1958065 1959960 R PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(1958065..1959960) Acidiphilium cryptum JF-5 5161514 YP_001234902.1 CDS Acry_1780 NC_009484.1 1960352 1961014 D PFAM: protein-L-isoaspartate(D-aspartate) O-methyltransferase; protein-L-isoaspartate(D-aspartate) O-methyltransferase 1960352..1961014 Acidiphilium cryptum JF-5 5161860 YP_001234903.1 CDS Acry_1781 NC_009484.1 1961064 1962617 D TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; TolC family type I secretion outer membrane protein 1961064..1962617 Acidiphilium cryptum JF-5 5161493 YP_001234904.1 CDS Acry_1782 NC_009484.1 1962614 1963171 D hypothetical protein 1962614..1963171 Acidiphilium cryptum JF-5 5161524 YP_001234905.1 CDS valS NC_009484.1 1963330 1966005 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 1963330..1966005 Acidiphilium cryptum JF-5 5159995 YP_001234906.1 CDS Acry_1784 NC_009484.1 1966078 1966908 D PFAM: band 7 protein; hypothetical protein 1966078..1966908 Acidiphilium cryptum JF-5 5159996 YP_001234907.1 CDS Acry_1785 NC_009484.1 1967004 1968332 R PFAM: peptidase U62, modulator of DNA gyrase; C69 family peptidase complement(1967004..1968332) Acidiphilium cryptum JF-5 5160198 YP_001234908.1 CDS Acry_1786 NC_009484.1 1968329 1969594 R PFAM: peptidase M16 domain protein; processing peptidase complement(1968329..1969594) Acidiphilium cryptum JF-5 5161658 YP_001234909.1 CDS Acry_1787 NC_009484.1 1969591 1970994 R catalyzes the formation of L-threonine from O-phospho-L-homoserine; threonine synthase complement(1969591..1970994) Acidiphilium cryptum JF-5 5161659 YP_001234910.1 CDS Acry_1788 NC_009484.1 1971057 1971557 R molecular chaperone that is required for the normal export of envelope proteins out of the cell cytoplasm; in Escherichia coli this proteins forms a homotetramer in the cytoplasm and delivers proteins to be exported to SecA; preprotein translocase subunit SecB complement(1971057..1971557) Acidiphilium cryptum JF-5 5162588 YP_001234911.1 CDS Acry_1789 NC_009484.1 1971641 1972591 D catalyzes the reduction of N-acetyl-5-glutamyl phosphate to N-acetyl-L-glutamate 5-semialdehyde in arginine biosynthesis; N-acetyl-gamma-glutamyl-phosphate reductase 1971641..1972591 Acidiphilium cryptum JF-5 5161196 YP_001234912.1 CDS Acry_1790 NC_009484.1 1972647 1973195 D TIGRFAM: 2'-5' RNA ligase; PFAM: 2',5' RNA ligase; 2'-5' RNA ligase 1972647..1973195 Acidiphilium cryptum JF-5 5161197 YP_001234913.1 CDS Acry_1791 NC_009484.1 1973308 1974834 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(1973308..1974834) Acidiphilium cryptum JF-5 5161674 YP_001234914.1 CDS Acry_1792 NC_009484.1 1974920 1975807 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 1974920..1975807 Acidiphilium cryptum JF-5 5161803 YP_001234915.1 CDS Acry_1793 NC_009484.1 1975868 1976359 R hypothetical protein complement(1975868..1976359) Acidiphilium cryptum JF-5 5161804 YP_001234916.1 CDS Acry_1794 NC_009484.1 1976383 1977435 D PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 1976383..1977435 Acidiphilium cryptum JF-5 5162245 YP_001234917.1 CDS Acry_1795 NC_009484.1 1977422 1979158 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 1977422..1979158 Acidiphilium cryptum JF-5 5159602 YP_001234918.1 CDS Acry_1796 NC_009484.1 1979155 1980279 D PFAM: ABC-2 type transporter; ABC-2 type transporter 1979155..1980279 Acidiphilium cryptum JF-5 5159603 YP_001234919.1 CDS Acry_1797 NC_009484.1 1980285 1981391 D PFAM: ABC-2 type transporter; ABC-2 type transporter 1980285..1981391 Acidiphilium cryptum JF-5 5160200 YP_001234920.1 CDS Acry_1798 NC_009484.1 1981545 1983218 D catalyzes the reduction of hydroxylamine to ammonia and water; hydroxylamine reductase 1981545..1983218 Acidiphilium cryptum JF-5 5159658 YP_001234921.1 CDS Acry_1799 NC_009484.1 1983295 1984305 D PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD-binding subunit 1983295..1984305 Acidiphilium cryptum JF-5 5159659 YP_001234922.1 CDS Acry_1800 NC_009484.1 1984337 1984789 D TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; BadM/Rrf2 family transcriptional regulator 1984337..1984789 Acidiphilium cryptum JF-5 5159542 YP_001234923.1 CDS Acry_1801 NC_009484.1 1984945 1986075 R cellulose biosynthesis protein CelD complement(1984945..1986075) Acidiphilium cryptum JF-5 5159531 YP_001234924.1 CDS Acry_1802 NC_009484.1 1986113 1987153 D hypothetical protein 1986113..1987153 Acidiphilium cryptum JF-5 5159532 YP_001234925.1 CDS Acry_1803 NC_009484.1 1987153 1988382 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 1987153..1988382 Acidiphilium cryptum JF-5 5159650 YP_001234926.1 CDS Acry_1804 NC_009484.1 1988400 1989440 D hypothetical protein 1988400..1989440 Acidiphilium cryptum JF-5 5159524 YP_001234927.1 CDS Acry_1805 NC_009484.1 1989437 1990555 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 1989437..1990555 Acidiphilium cryptum JF-5 5159525 YP_001234928.1 CDS Acry_1806 NC_009484.1 1990552 1990971 D hypothetical protein 1990552..1990971 Acidiphilium cryptum JF-5 5160079 YP_001234929.1 CDS Acry_1808 NC_009484.1 1991304 1992266 R TIGRFAM: CRISPR-associated protein Cas1; CRISPR-associated Cas1 family protein complement(1991304..1992266) Acidiphilium cryptum JF-5 5161899 YP_001234930.1 CDS Acry_1809 NC_009484.1 1992259 1992945 R TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein, CT1974; CRISPR-associated Cse3 family protein complement(1992259..1992945) Acidiphilium cryptum JF-5 5159681 YP_001234931.1 CDS Acry_1810 NC_009484.1 1992942 1993691 R TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; CRISPR-associated Cas5 family protein complement(1992942..1993691) Acidiphilium cryptum JF-5 5159552 YP_001234932.1 CDS Acry_1811 NC_009484.1 1993693 1994805 R TIGRFAM: CRISPR-associated protein, Cse4 family; CRISPR-associated Cse4 family protein complement(1993693..1994805) Acidiphilium cryptum JF-5 5160617 YP_001234933.1 CDS Acry_1812 NC_009484.1 1994805 1995344 R hypothetical protein complement(1994805..1995344) Acidiphilium cryptum JF-5 5160618 YP_001234934.1 CDS Acry_1813 NC_009484.1 1995341 1996930 R TIGRFAM: CRISPR-associated protein, Cse1 family; CRISPR-associated Cse1 family protein complement(1995341..1996930) Acidiphilium cryptum JF-5 5159744 YP_001234935.1 CDS Acry_1814 NC_009484.1 1997220 1999325 R TIGRFAM: CRISPR-associated helicase Cas3; PFAM: helicase domain protein; CRISPR-associated helicase Cas3 complement(1997220..1999325) Acidiphilium cryptum JF-5 5160032 YP_001234936.1 CDS Acry_1815 NC_009484.1 2000148 2000456 R hypothetical protein complement(2000148..2000456) Acidiphilium cryptum JF-5 5160033 YP_001234937.1 CDS Acry_1816 NC_009484.1 2000602 2002374 R PFAM: peptidase M41; AAA ATPase, central domain protein; SMART: AAA ATPase; ATPase central domain-containing protein complement(2000602..2002374) Acidiphilium cryptum JF-5 5159937 YP_001234938.1 CDS Acry_1817 NC_009484.1 2002595 2003308 R hypothetical protein complement(2002595..2003308) Acidiphilium cryptum JF-5 5159934 YP_001234939.1 CDS Acry_1818 NC_009484.1 2003548 2003775 D hypothetical protein 2003548..2003775 Acidiphilium cryptum JF-5 5159935 YP_001234940.1 CDS Acry_1819 NC_009484.1 2003885 2004370 R hypothetical protein complement(2003885..2004370) Acidiphilium cryptum JF-5 5160259 YP_001234941.1 CDS Acry_1820 NC_009484.1 2004619 2004942 R hypothetical protein complement(2004619..2004942) Acidiphilium cryptum JF-5 5160235 YP_001234942.1 CDS Acry_1821 NC_009484.1 2005182 2005508 R PFAM: NIPSNAP family containing protein; NIPSNAP family protein complement(2005182..2005508) Acidiphilium cryptum JF-5 5160236 YP_001234943.1 CDS Acry_1822 NC_009484.1 2005755 2007485 D PFAM: Resolvase, N-terminal domain; Recombinase; resolvase domain-containing protein 2005755..2007485 Acidiphilium cryptum JF-5 5159910 YP_001234944.1 CDS Acry_1823 NC_009484.1 2013473 2016055 R PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase complement(2013473..2016055) Acidiphilium cryptum JF-5 5162263 YP_001234945.1 CDS Acry_1824 NC_009484.1 2016173 2016934 D PFAM: MOSC domain containing protein; MOSC domain-containing protein 2016173..2016934 Acidiphilium cryptum JF-5 5160647 YP_001234946.1 CDS Acry_1825 NC_009484.1 2016985 2017569 D TIGRFAM: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 2016985..2017569 Acidiphilium cryptum JF-5 5159715 YP_001234947.1 CDS Acry_1826 NC_009484.1 2017577 2018116 D TIGRFAM: molybdopterin-guanine dinucleotide biosynthesis protein B; PFAM: molybdopterin-guanine dinucleotide biosynthesis MobB region; molybdopterin-guanine dinucleotide biosynthesis protein B 2017577..2018116 Acidiphilium cryptum JF-5 5159879 YP_001234948.1 CDS Acry_1827 NC_009484.1 2018170 2018940 D hypothetical protein 2018170..2018940 Acidiphilium cryptum JF-5 5159880 YP_001234949.1 CDS Acry_1828 NC_009484.1 2018972 2019223 D TIGRFAM: molybdopterin converting factor, subunit 1; PFAM: thiamineS protein; molybdopterin converting factor subunit 1 2018972..2019223 Acidiphilium cryptum JF-5 5159481 YP_001234950.1 CDS Acry_1829 NC_009484.1 2019220 2019678 D PFAM: molybdopterin biosynthesis MoaE protein; molybdopterin biosynthesis MoaE protein 2019220..2019678 Acidiphilium cryptum JF-5 5160131 YP_001234951.1 CDS Acry_1830 NC_009484.1 2019963 2020715 D PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 2019963..2020715 Acidiphilium cryptum JF-5 5160132 YP_001234952.1 CDS Acry_1831 NC_009484.1 2020749 2021900 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM domain-containing protein complement(2020749..2021900) Acidiphilium cryptum JF-5 5159918 YP_001234953.1 CDS Acry_1832 NC_009484.1 2021940 2022923 R TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase complement(2021940..2022923) Acidiphilium cryptum JF-5 5160111 YP_001234954.1 CDS Acry_1833 NC_009484.1 2023304 2025247 D catalyzes the formation of 1-deoxy-D-xylulose 5-phosphate from pyruvate and D-glyceraldehyde 3-phosphate; 1-deoxy-D-xylulose-5-phosphate synthase 2023304..2025247 Acidiphilium cryptum JF-5 5160112 YP_001234955.1 CDS Acry_1834 NC_009484.1 2025244 2025891 D PFAM: toluene tolerance family protein; toluene tolerance family protein 2025244..2025891 Acidiphilium cryptum JF-5 5160212 YP_001234956.1 CDS Acry_1835 NC_009484.1 2025893 2027086 D cell wall biosynthesis glycosyltransferase-like protein 2025893..2027086 Acidiphilium cryptum JF-5 5159796 YP_001234957.1 CDS Acry_1836 NC_009484.1 2027097 2028521 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM domain-containing protein 2027097..2028521 Acidiphilium cryptum JF-5 5159797 YP_001234958.1 CDS Acry_1837 NC_009484.1 2028543 2029346 D PFAM: YdjC family protein; hypothetical protein 2028543..2029346 Acidiphilium cryptum JF-5 5159969 YP_001234959.1 CDS Acry_1838 NC_009484.1 2029506 2031167 D hypothetical protein 2029506..2031167 Acidiphilium cryptum JF-5 5159851 YP_001234960.1 CDS Acry_1839 NC_009484.1 2031312 2031758 R PFAM: conserved hypothetical protein 701; hypothetical protein complement(2031312..2031758) Acidiphilium cryptum JF-5 5159852 YP_001234961.1 CDS Acry_1840 NC_009484.1 2031755 2032087 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(2031755..2032087) Acidiphilium cryptum JF-5 5159990 YP_001234962.1 CDS Acry_1841 NC_009484.1 2032161 2032889 R PFAM: protein of unknown function DUF542, ScdA domain protein; Hemerythrin HHE cation binding domain protein; hypothetical protein complement(2032161..2032889) Acidiphilium cryptum JF-5 5159469 YP_001234963.1 CDS Acry_1842 NC_009484.1 2032873 2033292 R hypothetical protein complement(2032873..2033292) Acidiphilium cryptum JF-5 5159470 YP_001234964.1 CDS Acry_1843 NC_009484.1 2033386 2033805 D TIGRFAM: putative transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; BadM/Rrf2 family transcriptional regulator 2033386..2033805 Acidiphilium cryptum JF-5 5160610 YP_001234965.1 CDS Acry_1844 NC_009484.1 2033926 2035650 R PFAM: helicase domain protein; DbpA, RNA-binding domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase complement(2033926..2035650) Acidiphilium cryptum JF-5 5160107 YP_001234966.1 CDS Acry_1845 NC_009484.1 2035778 2036434 R TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B complement(2035778..2036434) Acidiphilium cryptum JF-5 5160108 YP_001234967.1 CDS Acry_1846 NC_009484.1 2036434 2037120 R TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A complement(2036434..2037120) Acidiphilium cryptum JF-5 5159618 YP_001234968.1 CDS Acry_1847 NC_009484.1 2037125 2038327 R TIGRFAM: acetyl-CoA acetyltransferase; beta-ketoadipyl CoA thiolase; PFAM: Thiolase; beta-ketoadipyl CoA thiolase complement(2037125..2038327) Acidiphilium cryptum JF-5 5160006 YP_001234969.1 CDS Acry_1848 NC_009484.1 2038348 2038863 R TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit alpha complement(2038348..2038863) Acidiphilium cryptum JF-5 5160007 YP_001234970.1 CDS Acry_1849 NC_009484.1 2038873 2039577 R TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase; protocatechuate 3,4-dioxygenase subunit beta complement(2038873..2039577) Acidiphilium cryptum JF-5 5160246 YP_001234971.1 CDS Acry_1850 NC_009484.1 2039574 2040764 R catalyzes the formation of protocatechuate from 4-hydroxybenzoate; 4-hydroxybenzoate 3-monooxygenase complement(2039574..2040764) Acidiphilium cryptum JF-5 5159720 YP_001234972.1 CDS Acry_1851 NC_009484.1 2041073 2043259 D TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; catalase/peroxidase HPI 2041073..2043259 Acidiphilium cryptum JF-5 5159721 YP_001234973.1 CDS Acry_1852 NC_009484.1 2043310 2044302 R PFAM: inner-membrane translocator; monosaccharide-transporting ATPase complement(2043310..2044302) Acidiphilium cryptum JF-5 5159907 YP_001234974.1 CDS Acry_1853 NC_009484.1 2044319 2045338 R PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(2044319..2045338) Acidiphilium cryptum JF-5 5159451 YP_001234975.1 CDS Acry_1854 NC_009484.1 2045335 2046114 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2045335..2046114) Acidiphilium cryptum JF-5 5159452 YP_001234976.1 CDS Acry_1855 NC_009484.1 2046397 2047149 D PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 2046397..2047149 Acidiphilium cryptum JF-5 5159526 YP_001234977.1 CDS Acry_1856 NC_009484.1 2047149 2047967 D PFAM: amidohydrolase 2; amidohydrolase 2 2047149..2047967 Acidiphilium cryptum JF-5 5159573 YP_001234978.1 CDS Acry_1857 NC_009484.1 2048079 2048972 R PFAM: PfkB domain protein; ribokinase-like domain-containing protein complement(2048079..2048972) Acidiphilium cryptum JF-5 5159574 YP_001234979.1 CDS Acry_1858 NC_009484.1 2048972 2050153 R catalyzes the formation of 2-dehydro-3-deoxy-D-gluconate from mannonate; mannonate dehydratase complement(2048972..2050153) Acidiphilium cryptum JF-5 5159925 YP_001234980.1 CDS Acry_1859 NC_009484.1 2050174 2051586 R PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; mannitol dehydrogenase domain-containing protein complement(2050174..2051586) Acidiphilium cryptum JF-5 5159597 YP_001234981.1 CDS Acry_1860 NC_009484.1 2051564 2052337 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(2051564..2052337) Acidiphilium cryptum JF-5 5159598 YP_001234982.1 CDS Acry_1861 NC_009484.1 2052475 2053269 D PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 2052475..2053269 Acidiphilium cryptum JF-5 5159836 YP_001234983.1 CDS Acry_1862 NC_009484.1 2053266 2054882 D PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; galactarate dehydratase 2053266..2054882 Acidiphilium cryptum JF-5 5159908 YP_001234984.1 CDS Acry_1863 NC_009484.1 2054966 2055682 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2054966..2055682) Acidiphilium cryptum JF-5 5159909 YP_001234985.1 CDS Acry_1864 NC_009484.1 2055675 2057474 R PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2055675..2057474) Acidiphilium cryptum JF-5 5160629 YP_001234986.1 CDS Acry_1865 NC_009484.1 2057508 2058392 R PFAM: inner-membrane translocator; inner-membrane translocator complement(2057508..2058392) Acidiphilium cryptum JF-5 5159768 YP_001234987.1 CDS Acry_1866 NC_009484.1 2058486 2059607 R PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(2058486..2059607) Acidiphilium cryptum JF-5 5159769 YP_001234988.1 CDS Acry_1867 NC_009484.1 2059881 2060552 R TIGRFAM: dethiobiotin synthase; dethiobiotin synthase complement(2059881..2060552) Acidiphilium cryptum JF-5 5159734 YP_001234989.1 CDS Acry_1868 NC_009484.1 2060549 2061694 R TIGRFAM: 8-amino-7-oxononanoate synthase; PFAM: aminotransferase, class I and II; 8-amino-7-oxononanoate synthase complement(2060549..2061694) Acidiphilium cryptum JF-5 5159571 YP_001234990.1 CDS Acry_1869 NC_009484.1 2061782 2062759 D TIGRFAM: biotin synthase; PFAM: Radical SAM domain protein; biotin and thiamin synthesis associated; SMART: Elongator protein 3/MiaB/NifB; biotin synthase 2061782..2062759 Acidiphilium cryptum JF-5 5159572 YP_001234991.1 CDS Acry_1870 NC_009484.1 2062756 2064012 D catalyzes the formation of S-adenosyl-4-methylthionine-2-oxobutanoate and 7,8-diaminononanoate from S-adenosyl-L-methionine and 8-amino-7-oxononanoate; adenosylmethionine-8-amino-7-oxononanoate aminotransferase 2062756..2064012 Acidiphilium cryptum JF-5 5160268 YP_001234992.1 CDS Acry_1871 NC_009484.1 2064033 2064605 R hypothetical protein complement(2064033..2064605) Acidiphilium cryptum JF-5 5160247 YP_001234993.1 CDS Acry_1872 NC_009484.1 2064736 2065431 R PFAM: protein of unknown function DUF125, transmembrane; hypothetical protein complement(2064736..2065431) Acidiphilium cryptum JF-5 5160248 YP_001234994.1 CDS Acry_1873 NC_009484.1 2065607 2066419 R hypothetical protein complement(2065607..2066419) Acidiphilium cryptum JF-5 5160338 YP_001234995.1 CDS Acry_1874 NC_009484.1 2066696 2067313 R PFAM: cytochrome B561; cytochrome B561 complement(2066696..2067313) Acidiphilium cryptum JF-5 5160347 YP_001234996.1 CDS Acry_1875 NC_009484.1 2067395 2068771 R TIGRFAM: glutamate--cysteine ligase; PFAM: glutamate--cysteine ligase, GCS2; glutamate--cysteine ligase complement(2067395..2068771) Acidiphilium cryptum JF-5 5160348 YP_001234997.1 CDS Acry_1876 NC_009484.1 2068787 2069503 R in Escherichia coli RsmE methylates the N3 position of the U1498 base in 16S rRNA; cells lacking this function can grow, but are outcompeted by wild-type; SAM-dependent m(3)U1498 methyltransferase; 16S ribosomal RNA methyltransferase RsmE complement(2068787..2069503) Acidiphilium cryptum JF-5 5160267 YP_001234998.1 CDS Acry_1877 NC_009484.1 2069559 2070419 D TIGRFAM: 4-hydroxybenzoate polyprenyl transferase; PFAM: UbiA prenyltransferase; 4-hydroxybenzoate polyprenyltransferase 2069559..2070419 Acidiphilium cryptum JF-5 5162283 YP_001234999.1 CDS Acry_1878 NC_009484.1 2070416 2071060 D methyltransferase-like protein 2070416..2071060 Acidiphilium cryptum JF-5 5162284 YP_001235000.1 CDS Acry_1879 NC_009484.1 2071151 2071582 D PFAM: succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit 2071151..2071582 Acidiphilium cryptum JF-5 5160059 YP_001235001.1 CDS Acry_1880 NC_009484.1 2071606 2071983 D PFAM: succinate dehydrogenase, cytochrome b subunit; succinate dehydrogenase, cytochrome b subunit 2071606..2071983 Acidiphilium cryptum JF-5 5160349 YP_001235002.1 CDS sdhA NC_009484.1 2072009 2073820 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; succinate dehydrogenase flavoprotein subunit 2072009..2073820 Acidiphilium cryptum JF-5 5160350 YP_001235003.1 CDS sdhB NC_009484.1 2073837 2074619 D part of four member succinate dehydrogenase enzyme complex that forms a trimeric complex (trimer of tetramers); SdhA/B are the catalytic subcomplex and can exhibit succinate dehydrogenase activity in the absence of SdhC/D which are the membrane components and form cytochrome b556; SdhC binds ubiquinone; oxidizes succinate to fumarate while reducing ubiquinone to ubiquinol; the catalytic subunits are similar to fumarate reductase; succinate dehydrogenase iron-sulfur subunit 2073837..2074619 Acidiphilium cryptum JF-5 5160271 YP_001235004.1 CDS Acry_1883 NC_009484.1 2075234 2076883 R PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase complement(2075234..2076883) Acidiphilium cryptum JF-5 5159947 YP_001235005.1 CDS Acry_1884 NC_009484.1 2076880 2077581 R PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator complement(2076880..2077581) Acidiphilium cryptum JF-5 5159948 YP_001235006.1 CDS Acry_1886 NC_009484.1 2078438 2080093 D PEP carboxykinase; PEP carboxylase; PEPCK; catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using ATP; phosphoenolpyruvate carboxykinase 2078438..2080093 Acidiphilium cryptum JF-5 5162243 YP_001235007.1 CDS Acry_1887 NC_009484.1 2080608 2081777 D TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase 2080608..2081777 Acidiphilium cryptum JF-5 5160472 YP_001235008.1 CDS Acry_1888 NC_009484.1 2081774 2082463 D PFAM: multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein 2081774..2082463 Acidiphilium cryptum JF-5 5160473 YP_001235009.1 CDS Acry_1889 NC_009484.1 2082578 2083126 D PFAM: regulatory protein, MarR; MarR family transcriptional regulator 2082578..2083126 Acidiphilium cryptum JF-5 5160377 YP_001235010.1 CDS Acry_1890 NC_009484.1 2083126 2084232 D PFAM: secretion protein HlyD family protein; secretion protein HlyD family protein 2083126..2084232 Acidiphilium cryptum JF-5 5160667 YP_001235011.1 CDS Acry_1891 NC_009484.1 2084260 2085834 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 2084260..2085834 Acidiphilium cryptum JF-5 5160668 YP_001235012.1 CDS Acry_1892 NC_009484.1 2085877 2086518 R TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase; uracil phosphoribosyltransferase complement(2085877..2086518) Acidiphilium cryptum JF-5 5160544 YP_001235013.1 CDS Acry_1893 NC_009484.1 2086543 2087925 R PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase complement(2086543..2087925) Acidiphilium cryptum JF-5 5160301 YP_001235014.1 CDS Acry_1894 NC_009484.1 2087939 2088913 R hypothetical protein complement(2087939..2088913) Acidiphilium cryptum JF-5 5160302 YP_001235015.1 CDS Acry_1895 NC_009484.1 2088916 2091777 R PFAM: glycosyl transferase, family 2; Tetratricopeptide TPR_2 repeat protein; glycosyl transferase family protein complement(2088916..2091777) Acidiphilium cryptum JF-5 5160442 YP_001235016.1 CDS Acry_1896 NC_009484.1 2091722 2093497 R PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(2091722..2093497) Acidiphilium cryptum JF-5 5160525 YP_001235017.1 CDS Acry_1897 NC_009484.1 2093516 2094946 R TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; HlyD family type I secretion membrane fusion protein complement(2093516..2094946) Acidiphilium cryptum JF-5 5160526 YP_001235018.1 CDS Acry_1898 NC_009484.1 2094912 2097140 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2094912..2097140) Acidiphilium cryptum JF-5 5160283 YP_001235019.1 CDS Acry_1899 NC_009484.1 2097397 2097900 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 2097397..2097900 Acidiphilium cryptum JF-5 5159858 YP_001235020.1 CDS Acry_1900 NC_009484.1 2097907 2098767 R With MotB forms the ion channels that couple flagellar rotation to proton/sodium motive force across the membrane and forms the stator elements of the rotary flagellar machine; flagellar motor protein MotA complement(2097907..2098767) Acidiphilium cryptum JF-5 5159859 YP_001235021.1 CDS Acry_1901 NC_009484.1 2098816 2099931 R PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(2098816..2099931) Acidiphilium cryptum JF-5 5159630 YP_001235022.1 CDS Acry_1902 NC_009484.1 2100000 2100983 R PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; pyridoxal-5'-phosphate-dependent enzyme subunit beta complement(2100000..2100983) Acidiphilium cryptum JF-5 5160487 YP_001235023.1 CDS Acry_1903 NC_009484.1 2100980 2102410 R PFAM: glycosyl transferase, family 39; glycosyl transferase family protein complement(2100980..2102410) Acidiphilium cryptum JF-5 5160488 YP_001235024.1 CDS Acry_1904 NC_009484.1 2102514 2103608 R PFAM: glycosyl transferase, family 2; GtrA family protein; dolichyl-phosphate beta-D-mannosyltransferase complement(2102514..2103608) Acidiphilium cryptum JF-5 5160557 YP_001235025.1 CDS Acry_1905 NC_009484.1 2103619 2104104 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; redoxin domain-containing protein complement(2103619..2104104) Acidiphilium cryptum JF-5 5160519 YP_001235026.1 CDS Acry_1906 NC_009484.1 2104180 2104869 R PFAM: oxidoreductase, molybdopterin binding; molybdopterin binding oxidoreductase complement(2104180..2104869) Acidiphilium cryptum JF-5 5160520 YP_001235027.1 CDS smpB NC_009484.1 2104939 2105418 R binds to ssrA RNA (tmRNA) and is required for its successful binding to ribosomes; also appears to function in the trans-translation step by promoting accommodation of tmRNA into the ribosomal A site; SmpB protects the tmRNA from RNase R degradation in Caulobacter crescentus; both the tmRNA and SmpB are regulated in cell cycle-dependent manner; functions in release of stalled ribosomes from damaged mRNAs and targeting proteins for degradation; SsrA-binding protein complement(2104939..2105418) Acidiphilium cryptum JF-5 5160775 YP_001235028.1 CDS Acry_1908 NC_009484.1 2105418 2106296 R catalyzes the formation of dihydrodipicolinate from L-aspartate 4-semialdehyde and pyruvate in lysine and diaminopimelate biosynthesis; dihydrodipicolinate synthase complement(2105418..2106296) Acidiphilium cryptum JF-5 5160691 YP_001235029.1 CDS Acry_1909 NC_009484.1 2106388 2108421 D PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase 2106388..2108421 Acidiphilium cryptum JF-5 5160692 YP_001235030.1 CDS Acry_1910 NC_009484.1 2108403 2108885 D PFAM: phosphatidylglycerophosphatase A; phosphatidylglycerophosphatase A 2108403..2108885 Acidiphilium cryptum JF-5 5160572 YP_001235031.1 CDS Acry_1911 NC_009484.1 2108882 2109355 D PFAM: CinA domain protein; CinA domain-containing protein 2108882..2109355 Acidiphilium cryptum JF-5 5160727 YP_001235032.1 CDS Acry_1912 NC_009484.1 2109539 2111203 D PFAM: EAL domain protein; SMART: PAS domain containing protein; diguanylate phosphodiesterase 2109539..2111203 Acidiphilium cryptum JF-5 5160728 YP_001235033.1 CDS Acry_1913 NC_009484.1 2111232 2111744 R PFAM: Chromate transporter; chromate transporter complement(2111232..2111744) Acidiphilium cryptum JF-5 5159457 YP_001235034.1 CDS Acry_1914 NC_009484.1 2111741 2112826 R PFAM: Chromate transporter; chromate transporter complement(2111741..2112826) Acidiphilium cryptum JF-5 5160711 YP_001235035.1 CDS Acry_1915 NC_009484.1 2112990 2114069 D TIGRFAM: phosphate ABC transporter, periplasmic phosphate-binding protein; PFAM: extracellular solute-binding protein, family 1; phosphate ABC transporter periplasmic phosphate-binding protein 2112990..2114069 Acidiphilium cryptum JF-5 5160712 YP_001235036.1 CDS Acry_1916 NC_009484.1 2114151 2115125 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstC; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter inner membrane subunit PstC 2114151..2115125 Acidiphilium cryptum JF-5 5160571 YP_001235037.1 CDS Acry_1917 NC_009484.1 2115109 2115978 D TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; phosphate ABC transporter permease 2115109..2115978 Acidiphilium cryptum JF-5 5160773 YP_001235038.1 CDS Acry_1918 NC_009484.1 2115979 2116455 R PFAM: YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated domain-containing protein complement(2115979..2116455) Acidiphilium cryptum JF-5 5160774 YP_001235039.1 CDS Acry_1919 NC_009484.1 2116452 2116850 R hypothetical protein complement(2116452..2116850) Acidiphilium cryptum JF-5 5160476 YP_001235040.1 CDS Acry_1920 NC_009484.1 2116922 2118586 R TIGRFAM: oligoendopeptidase, M3 family; PFAM: peptidase M3A and M3B, thimet/oligopeptidase F; M3 family oligoendopeptidase complement(2116922..2118586) Acidiphilium cryptum JF-5 5160586 YP_001235041.1 CDS rplQ NC_009484.1 2118693 2119133 R is a component of the macrolide binding site in the peptidyl transferase center; 50S ribosomal protein L17 complement(2118693..2119133) Acidiphilium cryptum JF-5 5160587 YP_001235042.1 CDS Acry_1922 NC_009484.1 2119184 2120221 R catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Dimerization of the alpha subunit is the first step in the sequential assembly of subunits to form the holoenzyme; DNA-directed RNA polymerase subunit alpha complement(2119184..2120221) Acidiphilium cryptum JF-5 5160731 YP_001235043.1 CDS Acry_1923 NC_009484.1 2120338 2120730 R located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA; forms part of the Shine-Dalgarno cleft in the 70S ribosome; interacts with S7 and S18 and IF-3; 30S ribosomal protein S11 complement(2120338..2120730) Acidiphilium cryptum JF-5 5160748 YP_001235044.1 CDS rpsM NC_009484.1 2120809 2121186 R located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA; makes contact with the large subunit via RNA-protein interactions and via protein-protein interactions with L5; contacts P-site tRNA; 30S ribosomal protein S13 complement(2120809..2121186) Acidiphilium cryptum JF-5 5160749 YP_001235045.1 CDS Acry_1925 NC_009484.1 2121387 2122061 R PFAM: adenylate kinase; adenylate kinase, lid domain protein; adenylate kinase complement(2121387..2122061) Acidiphilium cryptum JF-5 5160512 YP_001235046.1 CDS Acry_1926 NC_009484.1 2122058 2123407 R TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; preprotein translocase subunit SecY complement(2122058..2123407) Acidiphilium cryptum JF-5 5160220 YP_001235047.1 CDS rplO NC_009484.1 2123545 2124030 R late assembly protein; 50S ribosomal protein L15 complement(2123545..2124030) Acidiphilium cryptum JF-5 5160221 YP_001235048.1 CDS Acry_1928 NC_009484.1 2124030 2124224 R PFAM: ribosomal protein L30; 50S ribosomal protein L30 complement(2124030..2124224) Acidiphilium cryptum JF-5 5160802 YP_001235049.1 CDS rpsE NC_009484.1 2124217 2124786 R located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body; contacts S4 and S8; with S4 and S12 plays a role in translational accuracy; mutations in this gene result in spectinomycin resistance; 30S ribosomal protein S5 complement(2124217..2124786) Acidiphilium cryptum JF-5 5160498 YP_001235050.1 CDS Acry_1930 NC_009484.1 2124797 2125159 R TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; 50S ribosomal protein L18 complement(2124797..2125159) Acidiphilium cryptum JF-5 5160499 YP_001235051.1 CDS rplF NC_009484.1 2125159 2125692 R ribosomal protein L6 appears to have arisen as a result of an ancient gene duplication as based on structural comparison of the Bacillus stearothermophilus protein; RNA-binding appears to be in the C-terminal domain; mutations in the L6 gene confer resistance to aminoglycoside antibiotics such as gentamicin and these occur in truncations of the C-terminal domain; it has been localized to a region between the base of the L7/L12 stalk and the central protuberance; 50S ribosomal protein L6 complement(2125159..2125692) Acidiphilium cryptum JF-5 5160412 YP_001235052.1 CDS rpsH NC_009484.1 2125705 2126097 R binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; 30S ribosomal protein S8 complement(2125705..2126097) Acidiphilium cryptum JF-5 5160871 YP_001235053.1 CDS rpsN NC_009484.1 2126115 2126420 R located in the peptidyl transferase center and involved in assembly of 30S ribosome subunit; similar to what is observed with proteins L31 and L33, some proteins in this family contain CXXC motifs that are involved in zinc binding; if two copies are present in a genome, then the duplicated copy appears to have lost the zinc-binding motif and is instead regulated by zinc; the proteins in this group do not appear to have the zinc-binding motif; 30S ribosomal protein S14 complement(2126115..2126420) Acidiphilium cryptum JF-5 5160872 YP_001235054.1 CDS rplE NC_009484.1 2126498 2127055 R part of 50S and 5S/L5/L18/L25 subcomplex; contacts 5S rRNA and P site tRNA; forms a bridge to the 30S subunit in the ribosome by binding to S13; 50S ribosomal protein L5 complement(2126498..2127055) Acidiphilium cryptum JF-5 5160844 YP_001235055.1 CDS rplX NC_009484.1 2127066 2127386 R assembly initiator protein; binds to 5' end of 23S rRNA and nucleates assembly of the 50S; surrounds polypeptide exit tunnel; 50S ribosomal protein L24 complement(2127066..2127386) Acidiphilium cryptum JF-5 5160832 YP_001235056.1 CDS rplN NC_009484.1 2127388 2127756 R binds to the 23S rRNA between the centers for peptidyl transferase and GTPase; 50S ribosomal protein L14 complement(2127388..2127756) Acidiphilium cryptum JF-5 5160833 YP_001235057.1 CDS rpsQ NC_009484.1 2127758 2128030 R primary binding protein; helps mediate assembly; involved in translation fidelity; 30S ribosomal protein S17 complement(2127758..2128030) Acidiphilium cryptum JF-5 5160936 YP_001235058.1 CDS Acry_1938 NC_009484.1 2128044 2128250 R one of the stabilizing components for the large ribosomal subunit; 50S ribosomal protein L29 complement(2128044..2128250) Acidiphilium cryptum JF-5 5160942 YP_001235059.1 CDS rplP NC_009484.1 2128252 2128668 R located in the peptidyl transferase center and may be involved in peptidyl transferase activity; similar to archaeal L10e; 50S ribosomal protein L16 complement(2128252..2128668) Acidiphilium cryptum JF-5 5160943 YP_001235060.1 CDS rpsC NC_009484.1 2128684 2129361 R forms a complex with S10 and S14; binds the lower part of the 30S subunit head and the mRNA in the complete ribosome to position it for translation; 30S ribosomal protein S3 complement(2128684..2129361) Acidiphilium cryptum JF-5 5160824 YP_001235061.1 CDS rplV NC_009484.1 2129361 2129822 R binds specifically to 23S rRNA during the early stages of 50S assembly; makes contact with all 6 domains of the 23S rRNA in the assembled 50S subunit and ribosome; mutations in this gene result in erythromycin resistance; located near peptidyl-transferase center; 50S ribosomal protein L22 complement(2129361..2129822) Acidiphilium cryptum JF-5 5160847 YP_001235062.1 CDS rpsS NC_009484.1 2129824 2130102 R protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA; 30S ribosomal protein S19 complement(2129824..2130102) Acidiphilium cryptum JF-5 5160848 YP_001235063.1 CDS rplB NC_009484.1 2130108 2130941 R one of the primary rRNA-binding proteins; required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation; 50S ribosomal protein L2 complement(2130108..2130941) Acidiphilium cryptum JF-5 5160921 YP_001235064.1 CDS rplW NC_009484.1 2130956 2131297 R binds third domain of 23S rRNA and protein L29; part of exit tunnel; 50S ribosomal protein L23 complement(2130956..2131297) Acidiphilium cryptum JF-5 5160746 YP_001235065.1 CDS rplD NC_009484.1 2131294 2131944 R L4 is important during the early stages of 50S assembly; it initially binds near the 5' end of the 23S rRNA; 50S ribosomal protein L4 complement(2131294..2131944) Acidiphilium cryptum JF-5 5160747 YP_001235066.1 CDS rplC NC_009484.1 2131955 2132638 R binds directly near the 3' end of the 23S rRNA, where it nucleates assembly of the 50S subunit; essential for peptidyltransferase activity; mutations in this gene confer resistance to tiamulin; 50S ribosomal protein L3 complement(2131955..2132638) Acidiphilium cryptum JF-5 5160830 YP_001235067.1 CDS rpsJ NC_009484.1 2132645 2132953 R NusE; involved in assembly of the 30S subunit; in the ribosome, this protein is involved in the binding of tRNA; in Escherichia coli this protein was also found to be involved in transcription antitermination; NusB/S10 heterodimers bind boxA sequences in the leader RNA of rrn operons which is required for antitermination; binding of NusB/S10 to boxA nucleates assembly of the antitermination complex; 30S ribosomal protein S10 complement(2132645..2132953) Acidiphilium cryptum JF-5 5160969 YP_001235068.1 CDS Acry_1948 NC_009484.1 2133085 2134272 R EF-Tu; promotes GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis; when the tRNA anticodon matches the mRNA codon, GTP hydrolysis results; the inactive EF-Tu-GDP leaves the ribosome and release of GDP is promoted by elongation factor Ts; many prokaryotes have two copies of the gene encoding EF-Tu; elongation factor Tu complement(2133085..2134272) Acidiphilium cryptum JF-5 5160970 YP_001235069.1 CDS Acry_1949 NC_009484.1 2134339 2134815 R binds directly to 16S rRNA where it nucleates assembly of the head domain of the 30S subunit; 30S ribosomal protein S7 complement(2134339..2134815) Acidiphilium cryptum JF-5 5160987 YP_001235070.1 CDS rpsL NC_009484.1 2134827 2135198 R interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone; located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side; mutations in the S12 gene confer streptomycin resistance; 30S ribosomal protein S12 complement(2134827..2135198) Acidiphilium cryptum JF-5 5160233 YP_001235071.1 CDS Acry_1951 NC_009484.1 2135587 2139753 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Subunit beta' binds to sigma factor allowing it to bind to the -10 region of the promoter; DNA-directed RNA polymerase subunit beta' complement(2135587..2139753) Acidiphilium cryptum JF-5 5160234 YP_001235072.1 CDS rpoB NC_009484.1 2139824 2144026 R DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme; DNA-directed RNA polymerase subunit beta complement(2139824..2144026) Acidiphilium cryptum JF-5 5160885 YP_001235073.1 CDS rplL NC_009484.1 2144248 2144631 R present in two forms; L12 is normal, while L7 is aminoacylated at the N-terminal serine; the only multicopy ribosomal protein; 4:1 ratio of L7/L12 per ribosome; two L12 dimers bind L10; critically important for translation efficiency and fidelity; stimulates GTPase activity of translation factors; 50S ribosomal protein L7/L12 complement(2144248..2144631) Acidiphilium cryptum JF-5 5160925 YP_001235074.1 CDS rplJ NC_009484.1 2144704 2145228 R binds the two ribosomal protein L7/L12 dimers and anchors them to the large ribosomal subunit; 50S ribosomal protein L10 complement(2144704..2145228) Acidiphilium cryptum JF-5 5160926 YP_001235075.1 CDS rplA NC_009484.1 2145486 2146178 R in Escherichia coli and Methanococcus, this protein autoregulates expression; the binding site in the mRNA mimics the binding site in the 23S rRNA; 50S ribosomal protein L1 complement(2145486..2146178) Acidiphilium cryptum JF-5 5161033 YP_001235076.1 CDS rplK NC_009484.1 2146181 2146615 R binds directly to 23S ribosomal RNA; 50S ribosomal protein L11 complement(2146181..2146615) Acidiphilium cryptum JF-5 5160981 YP_001235077.1 CDS Acry_1957 NC_009484.1 2146825 2147490 R PFAM: OmpW family protein; OmpW family protein complement(2146825..2147490) Acidiphilium cryptum JF-5 5160982 YP_001235078.1 CDS Acry_1958 NC_009484.1 2147673 2148653 D PFAM: aldo/keto reductase; aldo/keto reductase 2147673..2148653 Acidiphilium cryptum JF-5 5160888 YP_001235079.1 CDS gltX NC_009484.1 2148736 2150136 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2148736..2150136) Acidiphilium cryptum JF-5 5160851 YP_001235080.1 CDS Acry_1960 NC_009484.1 2150176 2151018 R TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase complement(2150176..2151018) Acidiphilium cryptum JF-5 5160852 YP_001235081.1 CDS Acry_1961 NC_009484.1 2151015 2152079 R catalyzes the conversion of dihydroorotate to orotate in the pyrimidine biosynthesis pathway; uses a flavin nucleotide as an essential cofactor; class 2 enzymes are monomeric and compared to the class 1 class 2 possess an extended N terminus, which plays a role in the membrane association of the enzyme and provides the binding site for the respiratory quinones that serve as physiological electron acceptors; dihydroorotate dehydrogenase 2 complement(2151015..2152079) Acidiphilium cryptum JF-5 5160818 YP_001235082.1 CDS Acry_1962 NC_009484.1 2152079 2152522 R hypothetical protein complement(2152079..2152522) Acidiphilium cryptum JF-5 5160615 YP_001235083.1 CDS Acry_1963 NC_009484.1 2152691 2153536 R PFAM: fumarylacetoacetate (FAA) hydrolase; 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(2152691..2153536) Acidiphilium cryptum JF-5 5160616 YP_001235084.1 CDS Acry_1964 NC_009484.1 2153732 2155057 D catalyzes the formation of pyruvate and beta-alanine from L-alanine and 3-oxopropanoate; beta alanine--pyruvate transaminase 2153732..2155057 Acidiphilium cryptum JF-5 5160522 YP_001235085.1 CDS Acry_1965 NC_009484.1 2155095 2156525 D PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 2155095..2156525 Acidiphilium cryptum JF-5 5160977 YP_001235086.1 CDS Acry_1966 NC_009484.1 2156548 2157345 R PFAM: peptidase S49; peptidase S49 complement(2156548..2157345) Acidiphilium cryptum JF-5 5160978 YP_001235087.1 CDS Acry_1967 NC_009484.1 2157342 2157767 R PFAM: uncharacterised conserved protein UCP032025; hypothetical protein complement(2157342..2157767) Acidiphilium cryptum JF-5 5161003 YP_001235088.1 CDS Acry_1968 NC_009484.1 2157764 2160076 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; carbon-monoxide dehydrogenase complement(2157764..2160076) Acidiphilium cryptum JF-5 5161089 YP_001235089.1 CDS Acry_1969 NC_009484.1 2160227 2160925 D anti-ECFsigma factor ChrR 2160227..2160925 Acidiphilium cryptum JF-5 5161090 YP_001235090.1 CDS Acry_1970 NC_009484.1 2160930 2162027 D PFAM: amine oxidase; FAD dependent oxidoreductase; amine oxidase 2160930..2162027 Acidiphilium cryptum JF-5 5160567 YP_001235091.1 CDS Acry_1971 NC_009484.1 2162024 2163232 R PFAM: inner-membrane translocator; monosaccharide-transporting ATPase complement(2162024..2163232) Acidiphilium cryptum JF-5 5161091 YP_001235092.1 CDS Acry_1972 NC_009484.1 2163229 2164038 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2163229..2164038) Acidiphilium cryptum JF-5 5161092 YP_001235093.1 CDS Acry_1973 NC_009484.1 2164103 2165212 R PFAM: periplasmic binding protein/LacI transcriptional regulator; monosaccharide-transporting ATPase complement(2164103..2165212) Acidiphilium cryptum JF-5 5161139 YP_001235094.1 CDS Acry_1974 NC_009484.1 2165377 2165616 R hypothetical protein complement(2165377..2165616) Acidiphilium cryptum JF-5 5161123 YP_001235095.1 CDS Acry_1975 NC_009484.1 2165665 2167488 R PFAM: ABC transporter, transmembrane region; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2165665..2167488) Acidiphilium cryptum JF-5 5161124 YP_001235096.1 CDS Acry_1976 NC_009484.1 2167490 2168428 D PFAM: NUDIX hydrolase; NUDIX hydrolase 2167490..2168428 Acidiphilium cryptum JF-5 5161088 YP_001235097.1 CDS Acry_1977 NC_009484.1 2168450 2169118 R PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(2168450..2169118) Acidiphilium cryptum JF-5 5160670 YP_001235098.1 CDS Acry_1978 NC_009484.1 2169300 2170550 D PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; molybdopterin binding oxidoreductase 2169300..2170550 Acidiphilium cryptum JF-5 5160671 YP_001235099.1 CDS Acry_1979 NC_009484.1 2170567 2170917 D hypothetical protein 2170567..2170917 Acidiphilium cryptum JF-5 5161130 YP_001235100.1 CDS Acry_1980 NC_009484.1 2170924 2172735 R PFAM: TrkA-N domain protein; sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(2170924..2172735) Acidiphilium cryptum JF-5 5161163 YP_001235101.1 CDS Acry_1981 NC_009484.1 2172952 2174337 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; pyridine nucleotide-disulfide oxidoreductase dimerisation region 2172952..2174337 Acidiphilium cryptum JF-5 5161164 YP_001235102.1 CDS Acry_1982 NC_009484.1 2174386 2175792 D TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase, class II; phospho-2-dehydro-3-deoxyheptonate aldolase 2174386..2175792 Acidiphilium cryptum JF-5 5161142 YP_001235103.1 CDS Acry_1983 NC_009484.1 2175793 2176944 D nicotinic acid phosphoribosyltransferase-like protein 2175793..2176944 Acidiphilium cryptum JF-5 5161135 YP_001235104.1 CDS Acry_1984 NC_009484.1 2176966 2177313 R PFAM: protein of unknown function DUF937; hypothetical protein complement(2176966..2177313) Acidiphilium cryptum JF-5 5161136 YP_001235105.1 CDS Acry_1985 NC_009484.1 2177404 2177730 R hypothetical protein complement(2177404..2177730) Acidiphilium cryptum JF-5 5161217 YP_001235106.1 CDS nadE NC_009484.1 2177815 2179566 D NH(3)-dependent; catalyzes the formation of nicotinamide adenine dinucleotide (NAD) from nicotinic acid adenine dinucleotide (NAAD) using either ammonia or glutamine as the amide donor and ATP; ammonia-utilizing enzymes include the ones from Bacillus and Escherichia coli while glutamine-utilizing enzymes include the Mycobacterial one; forms homodimers; NAD synthetase 2177815..2179566 Acidiphilium cryptum JF-5 5161231 YP_001235107.1 CDS Acry_1987 NC_009484.1 2179567 2181066 R hypothetical protein complement(2179567..2181066) Acidiphilium cryptum JF-5 5161232 YP_001235108.1 CDS Acry_1988 NC_009484.1 2181393 2181662 R PFAM: histone family protein DNA-binding protein; histone family protein DNA-binding protein complement(2181393..2181662) Acidiphilium cryptum JF-5 5159699 YP_001235109.1 CDS Acry_1989 NC_009484.1 2182106 2182717 R hypothetical protein complement(2182106..2182717) Acidiphilium cryptum JF-5 5162373 YP_001235110.1 CDS Acry_1990 NC_009484.1 2182912 2183175 R TIGRFAM: cell division topological specificity factor MinE; PFAM: Septum formation topological specificity factor MinE; cell division topological specificity factor MinE complement(2182912..2183175) Acidiphilium cryptum JF-5 5162244 YP_001235111.1 CDS Acry_1991 NC_009484.1 2183172 2183987 R TIGRFAM: septum site-determining protein MinD; PFAM: Cobyrinic acid a,c-diamide synthase; septum site-determining protein MinD complement(2183172..2183987) Acidiphilium cryptum JF-5 5161129 YP_001235112.1 CDS minC NC_009484.1 2183998 2184846 R blocks the formation of polar Z-ring septums; septum formation inhibitor complement(2183998..2184846) Acidiphilium cryptum JF-5 5160593 YP_001235113.1 CDS Acry_1993 NC_009484.1 2184901 2185881 R PFAM: oxidoreductase domain protein; oxidoreductase domain-containing protein complement(2184901..2185881) Acidiphilium cryptum JF-5 5160594 YP_001235114.1 CDS Acry_1995 NC_009484.1 2188624 2189094 D hypothetical protein 2188624..2189094 Acidiphilium cryptum JF-5 5162200 YP_001235115.1 CDS Acry_1996 NC_009484.1 2189098 2189814 R PFAM: lipolytic enzyme, G-D-S-L family; GDSL family lipase complement(2189098..2189814) Acidiphilium cryptum JF-5 5160381 YP_001235116.1 CDS Acry_1997 NC_009484.1 2189792 2190898 R hypothetical protein complement(2189792..2190898) Acidiphilium cryptum JF-5 5160382 YP_001235117.1 CDS Acry_1998 NC_009484.1 2190895 2191485 R TIGRFAM: recombination protein RecR; PFAM: RecR protein; recombination protein RecR complement(2190895..2191485) Acidiphilium cryptum JF-5 5160187 YP_001235118.1 CDS Acry_1999 NC_009484.1 2191511 2191834 R PFAM: conserved hypothetical protein 103; hypothetical protein complement(2191511..2191834) Acidiphilium cryptum JF-5 5161249 YP_001235119.1 CDS Acry_2000 NC_009484.1 2191834 2193678 R catalyzes the DNA-template-directed extension of the 3'-end of a DNA strand; the tau chain serves as a scaffold to help in the dimerizaton of the alpha,epsilon and theta core complex; the gamma chain seems to interact with the delta and delta' subunits to transfer the beta subunit on the DNA; DNA polymerase III subunits gamma and tau complement(2191834..2193678) Acidiphilium cryptum JF-5 5161250 YP_001235120.1 CDS Acry_2001 NC_009484.1 2193886 2194797 D PFAM: NUDIX hydrolase; NUDIX hydrolase 2193886..2194797 Acidiphilium cryptum JF-5 5162201 YP_001235121.1 CDS Acry_2002 NC_009484.1 2194887 2195486 D stationary phase protein that binds TrpR repressor; TrpR binding protein WrbA 2194887..2195486 Acidiphilium cryptum JF-5 5161212 YP_001235122.1 CDS Acry_2003 NC_009484.1 2195597 2196526 D PFAM: metallophosphoesterase; acid phosphatase 2195597..2196526 Acidiphilium cryptum JF-5 5161213 YP_001235123.1 CDS Acry_2004 NC_009484.1 2196545 2198557 R hypothetical protein complement(2196545..2198557) Acidiphilium cryptum JF-5 5161308 YP_001235124.1 CDS Acry_2005 NC_009484.1 2198554 2201232 R TIGRFAM: conserved hypothetical membrane protein; hypothetical protein complement(2198554..2201232) Acidiphilium cryptum JF-5 5161267 YP_001235125.1 CDS Acry_2006 NC_009484.1 2201229 2202092 R hypothetical protein complement(2201229..2202092) Acidiphilium cryptum JF-5 5161268 YP_001235126.1 CDS Acry_2007 NC_009484.1 2202073 2203161 R PFAM: ATPase associated with various cellular activities, AAA_3; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; ATPase complement(2202073..2203161) Acidiphilium cryptum JF-5 5161324 YP_001235127.1 CDS Acry_2008 NC_009484.1 2203188 2203856 D PFAM: protein of unknown function DUF1285; hypothetical protein 2203188..2203856 Acidiphilium cryptum JF-5 5161320 YP_001235128.1 CDS Acry_2009 NC_009484.1 2203861 2204454 D PFAM: NUDIX hydrolase; NUDIX hydrolase 2203861..2204454 Acidiphilium cryptum JF-5 5161321 YP_001235129.1 CDS Acry_2010 NC_009484.1 2204548 2205717 D PFAM: Polynucleotide adenylyltransferase region; polynucleotide adenylyltransferase 2204548..2205717 Acidiphilium cryptum JF-5 5161253 YP_001235130.1 CDS Acry_2011 NC_009484.1 2205696 2206373 R PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; ribosomal RNA methyltransferase RrmJ/FtsJ complement(2205696..2206373) Acidiphilium cryptum JF-5 5161183 YP_001235131.1 CDS Acry_2012 NC_009484.1 2206370 2207464 R PFAM: Ppx/GppA phosphatase; Ppx/GppA phosphatase complement(2206370..2207464) Acidiphilium cryptum JF-5 5161184 YP_001235132.1 CDS Acry_2013 NC_009484.1 2208055 2210439 D PFAM: Transketolase, central region; pyruvate dehydrogenase 2208055..2210439 Acidiphilium cryptum JF-5 5162482 YP_001235133.1 CDS Acry_2014 NC_009484.1 2210464 2211063 R TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; sigma 54 modulation protein/ribosomal protein S30EA complement(2210464..2211063) Acidiphilium cryptum JF-5 5161314 YP_001235134.1 CDS Acry_2015 NC_009484.1 2211195 2212667 R sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released; sigma 54 factor is responsible for the expression of enzymes involved in nitrogen assimilation and metabolism; the rhizobia often have 2 copies of this sigma factor; in Rhizobium etli RpoN1 shown to be involved in the assimilation of several nitrogen and carbon sources during free-living aerobic growth and RpoN2 is involved in symbiotic nitrogen fixation; in Bradyrhizobium both RpoN1 and N2 are functional in free-living and symbiotic conditions, rpoN1 gene was regulated in response to oxygen; RNA polymerase factor sigma-54 complement(2211195..2212667) Acidiphilium cryptum JF-5 5161315 YP_001235135.1 CDS Acry_2016 NC_009484.1 2212790 2213713 R PFAM: type II secretion system protein; type II secretion system protein complement(2212790..2213713) Acidiphilium cryptum JF-5 5161311 YP_001235136.1 CDS Acry_2017 NC_009484.1 2213715 2214674 R PFAM: type II secretion system protein; type II secretion system protein complement(2213715..2214674) Acidiphilium cryptum JF-5 5161287 YP_001235137.1 CDS Acry_2018 NC_009484.1 2214671 2216008 R PFAM: type II secretion system protein E; type II secretion system protein E complement(2214671..2216008) Acidiphilium cryptum JF-5 5161288 YP_001235138.1 CDS Acry_2019 NC_009484.1 2216005 2217207 R Flp pilus assembly protein ATPase CpaE-like protein complement(2216005..2217207) Acidiphilium cryptum JF-5 5161271 YP_001235139.1 CDS Acry_2020 NC_009484.1 2217204 2218031 R PFAM: SAF domain; SAF domain-containing protein complement(2217204..2218031) Acidiphilium cryptum JF-5 5161397 YP_001235140.1 CDS Acry_2021 NC_009484.1 2218196 2218399 R PFAM: Flp/Fap pilin component; Flp/Fap pilin component complement(2218196..2218399) Acidiphilium cryptum JF-5 5161398 YP_001235141.1 CDS Acry_2022 NC_009484.1 2218585 2219577 R PFAM: PfkB domain protein; ribokinase-like domain-containing protein complement(2218585..2219577) Acidiphilium cryptum JF-5 5161138 YP_001235142.1 CDS Acry_2023 NC_009484.1 2219982 2220452 D PFAM: protein of unknown function DUF583; hypothetical protein 2219982..2220452 Acidiphilium cryptum JF-5 5161345 YP_001235143.1 CDS Acry_2024 NC_009484.1 2220491 2220838 D hypothetical protein 2220491..2220838 Acidiphilium cryptum JF-5 5161346 YP_001235144.1 CDS Acry_2025 NC_009484.1 2220910 2221863 D catalyzes the second step in the glutathione biosynthesis pathway, where it synthesizes ATP + gamma-L-glutamyl-L-cysteine + glycine = ADP + phosphate + glutathione; glutathione synthetase 2220910..2221863 Acidiphilium cryptum JF-5 5160369 YP_001235145.1 CDS Acry_2026 NC_009484.1 2221867 2222445 D hypothetical protein 2221867..2222445 Acidiphilium cryptum JF-5 5162398 YP_001235146.1 CDS Acry_2027 NC_009484.1 2222456 2223295 R PFAM: cell wall hydrolase/autolysin; N-acetylmuramoyl-L-alanine amidase complement(2222456..2223295) Acidiphilium cryptum JF-5 5162399 YP_001235147.1 CDS Acry_2028 NC_009484.1 2223486 2223902 D hypothetical protein 2223486..2223902 Acidiphilium cryptum JF-5 5161304 YP_001235148.1 CDS Acry_2029 NC_009484.1 2223909 2225372 R catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase complement(2223909..2225372) Acidiphilium cryptum JF-5 5161285 YP_001235149.1 CDS Acry_2030 NC_009484.1 2225593 2227140 D TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; EmrB/QacA family drug resistance transporter 2225593..2227140 Acidiphilium cryptum JF-5 5161286 YP_001235150.1 CDS Acry_2031 NC_009484.1 2227160 2227678 R TIGRFAM: 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; PFAM: MECDP-synthase; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase complement(2227160..2227678) Acidiphilium cryptum JF-5 5159991 YP_001235151.1 CDS Acry_2032 NC_009484.1 2227785 2228846 D TIGRFAM: putative TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase, DuS; nifR3 family TIM-barrel protein 2227785..2228846 Acidiphilium cryptum JF-5 5161414 YP_001235152.1 CDS Acry_2033 NC_009484.1 2228843 2229988 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; signal transduction histidine kinase, nitrogen specific, NtrB 2228843..2229988 Acidiphilium cryptum JF-5 5161415 YP_001235153.1 CDS Acry_2034 NC_009484.1 2229985 2231448 D TIGRFAM: nitrogen regulation protein NR(I); PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; nitrogen metabolism transcriptional regulator NtrC 2229985..2231448 Acidiphilium cryptum JF-5 5161342 YP_001235154.1 CDS Acry_2035 NC_009484.1 2231456 2233678 D TIGRFAM: PAS sensor protein; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; multi-sensor signal transduction histidine kinase 2231456..2233678 Acidiphilium cryptum JF-5 5161374 YP_001235155.1 CDS Acry_2036 NC_009484.1 2233686 2235083 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; two component sigma54 specific Fis family transcriptional regulator 2233686..2235083 Acidiphilium cryptum JF-5 5161375 YP_001235156.1 CDS Acry_2037 NC_009484.1 2235221 2237686 D PFAM: TonB-dependent receptor; TonB-dependent receptor 2235221..2237686 Acidiphilium cryptum JF-5 5161400 YP_001235157.1 CDS Acry_2038 NC_009484.1 2238107 2238592 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; single-strand binding protein complement(2238107..2238592) Acidiphilium cryptum JF-5 5161534 YP_001235158.1 CDS Acry_2039 NC_009484.1 2238718 2239743 R TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase, subunit II; cytochrome d ubiquinol oxidase subunit II complement(2238718..2239743) Acidiphilium cryptum JF-5 5161535 YP_001235159.1 CDS Acry_2040 NC_009484.1 2239749 2241167 R PFAM: cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(2239749..2241167) Acidiphilium cryptum JF-5 5160231 YP_001235160.1 CDS Acry_2041 NC_009484.1 2241164 2241805 R transcriptional regulator-like protein complement(2241164..2241805) Acidiphilium cryptum JF-5 5161464 YP_001235161.1 CDS Acry_2042 NC_009484.1 2241872 2242783 R PFAM: protein of unknown function UPF0187; hypothetical protein complement(2241872..2242783) Acidiphilium cryptum JF-5 5161465 YP_001235162.1 CDS Acry_2043 NC_009484.1 2242823 2243755 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2242823..2243755) Acidiphilium cryptum JF-5 5161347 YP_001235163.1 CDS Acry_2044 NC_009484.1 2244079 2246367 D TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; oxidoreductase alpha (molybdopterin) subunit 2244079..2246367 Acidiphilium cryptum JF-5 5161358 YP_001235164.1 CDS Acry_2045 NC_009484.1 2246422 2247498 R PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase complement(2246422..2247498) Acidiphilium cryptum JF-5 5161359 YP_001235165.1 CDS uvrA NC_009484.1 2247498 2250377 R The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate; excinuclease ABC subunit A complement(2247498..2250377) Acidiphilium cryptum JF-5 5161170 YP_001235166.1 CDS Acry_2047 NC_009484.1 2250443 2250733 D hypothetical protein 2250443..2250733 Acidiphilium cryptum JF-5 5162410 YP_001235167.1 CDS holA NC_009484.1 2250737 2251741 R required for the assembly and function of the DNAX complex which are required for the assembly of the beta subunit onto primed DNA; DNA polymerase III subunit delta complement(2250737..2251741) Acidiphilium cryptum JF-5 5162411 YP_001235168.1 CDS Acry_2049 NC_009484.1 2251746 2252264 R secreted (periplasmic) protein-like protein complement(2251746..2252264) Acidiphilium cryptum JF-5 5161392 YP_001235169.1 CDS leuS NC_009484.1 2252248 2254842 R leucine--tRNA ligase; LeuRS; class-I aminoacyl-tRNA synthetase; charges leucine by linking carboxyl group to alpha-phosphate of ATP and then transfers aminoacyl-adenylate to its tRNA; due to the large number of codons that tRNA(Leu) recognizes, the leucyl-tRNA synthetase does not recognize the anticodon loop of the tRNA, but instead recognition is dependent on a conserved discriminator base A37 and a long arm; an editing domain hydrolyzes misformed products; in Methanothermobacter thermautotrophicus this enzyme associates with prolyl-tRNA synthetase; leucyl-tRNA synthetase complement(2252248..2254842) Acidiphilium cryptum JF-5 5161511 YP_001235170.1 CDS Acry_2051 NC_009484.1 2254847 2255395 R hypothetical protein complement(2254847..2255395) Acidiphilium cryptum JF-5 5161512 YP_001235171.1 CDS Acry_2052 NC_009484.1 2255627 2256931 R hypothetical protein complement(2255627..2256931) Acidiphilium cryptum JF-5 5161506 YP_001235172.1 CDS Acry_2053 NC_009484.1 2257102 2257611 R PFAM: thiamine monophosphate synthase; thiamine monophosphate synthase complement(2257102..2257611) Acidiphilium cryptum JF-5 5161449 YP_001235173.1 CDS Acry_2054 NC_009484.1 2257703 2258392 D PFAM: alanine racemase domain protein; alanine racemase domain-containing protein 2257703..2258392 Acidiphilium cryptum JF-5 5161450 YP_001235174.1 CDS Acry_2055 NC_009484.1 2258386 2259366 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(2258386..2259366) Acidiphilium cryptum JF-5 5161494 YP_001235175.1 CDS Acry_2056 NC_009484.1 2259369 2260646 R PFAM: protein of unknown function DUF445; hypothetical protein complement(2259369..2260646) Acidiphilium cryptum JF-5 5161517 YP_001235176.1 CDS Acry_2057 NC_009484.1 2260735 2262072 D catalyzes the formation of 5-phospho-alpha-D-ribose 1-diphosphate and nicotinate from nicotinate D-ribonucleotide and diphosphate; nicotinate phosphoribosyltransferase 2260735..2262072 Acidiphilium cryptum JF-5 5161518 YP_001235177.1 CDS Acry_2058 NC_009484.1 2262075 2263418 D hypothetical protein 2262075..2263418 Acidiphilium cryptum JF-5 5161240 YP_001235178.1 CDS Acry_2059 NC_009484.1 2263415 2264374 D TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase 2263415..2264374 Acidiphilium cryptum JF-5 5161592 YP_001235179.1 CDS Acry_2060 NC_009484.1 2264364 2265200 D hypothetical protein 2264364..2265200 Acidiphilium cryptum JF-5 5161593 YP_001235180.1 CDS Acry_2061 NC_009484.1 2265176 2265841 R PFAM: phosphoribosyltransferase; phosphoribosyltransferase complement(2265176..2265841) Acidiphilium cryptum JF-5 5161649 YP_001235181.1 CDS Acry_2062 NC_009484.1 2265852 2266292 R hypothetical protein complement(2265852..2266292) Acidiphilium cryptum JF-5 5161608 YP_001235182.1 CDS Acry_2063 NC_009484.1 2266474 2268264 D PFAM: Patatin; patatin 2266474..2268264 Acidiphilium cryptum JF-5 5161609 YP_001235183.1 CDS Acry_2064 NC_009484.1 2268273 2269484 R PFAM: major facilitator superfamily MFS_1; major facilitator transporter complement(2268273..2269484) Acidiphilium cryptum JF-5 5161539 YP_001235184.1 CDS Acry_2065 NC_009484.1 2269610 2272015 R PFAM: Transketolase, central region; transketolase, central region complement(2269610..2272015) Acidiphilium cryptum JF-5 5162308 YP_001235185.1 CDS Acry_2066 NC_009484.1 2272136 2272606 D PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 2272136..2272606 Acidiphilium cryptum JF-5 5162309 YP_001235186.1 CDS Acry_2067 NC_009484.1 2272622 2274739 R TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase complement(2272622..2274739) Acidiphilium cryptum JF-5 5162378 YP_001235187.1 CDS Acry_2068 NC_009484.1 2275106 2276404 D PFAM: major facilitator superfamily MFS_1; major facilitator transporter 2275106..2276404 Acidiphilium cryptum JF-5 5161527 YP_001235188.1 CDS Acry_2069 NC_009484.1 2276707 2277948 D PFAM: Rieske [2Fe-2S] domain protein; Rieske (2Fe-2S) domain-containing protein 2276707..2277948 Acidiphilium cryptum JF-5 5161528 YP_001235189.1 CDS Acry_2070 NC_009484.1 2277950 2279200 D PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; cystathionine gamma-synthase 2277950..2279200 Acidiphilium cryptum JF-5 5161279 YP_001235190.1 CDS Acry_2071 NC_009484.1 2279197 2280690 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 2279197..2280690 Acidiphilium cryptum JF-5 5161590 YP_001235191.1 CDS Acry_2072 NC_009484.1 2280687 2281865 D PFAM: FAD dependent oxidoreductase; FAD dependent oxidoreductase 2280687..2281865 Acidiphilium cryptum JF-5 5161591 YP_001235192.1 CDS Acry_2073 NC_009484.1 2281862 2282980 D PFAM: FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase 2281862..2282980 Acidiphilium cryptum JF-5 5161617 YP_001235193.1 CDS Acry_2074 NC_009484.1 2282987 2283949 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2282987..2283949) Acidiphilium cryptum JF-5 5161406 YP_001235194.1 CDS Acry_2075 NC_009484.1 2284023 2286053 R TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase complement(2284023..2286053) Acidiphilium cryptum JF-5 5161407 YP_001235195.1 CDS Acry_2076 NC_009484.1 2286050 2286901 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2286050..2286901) Acidiphilium cryptum JF-5 5160254 YP_001235196.1 CDS Acry_2077 NC_009484.1 2286898 2287863 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(2286898..2287863) Acidiphilium cryptum JF-5 5161672 YP_001235197.1 CDS Acry_2078 NC_009484.1 2287867 2289519 R PFAM: extracellular solute-binding protein, family 5; extracellular solute-binding protein complement(2287867..2289519) Acidiphilium cryptum JF-5 5161673 YP_001235198.1 CDS Acry_2079 NC_009484.1 2289879 2290898 D PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2289879..2290898 Acidiphilium cryptum JF-5 5161686 YP_001235199.1 CDS Acry_2080 NC_009484.1 2291045 2291896 D PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase 2291045..2291896 Acidiphilium cryptum JF-5 5161757 YP_001235200.1 CDS Acry_2082 NC_009484.1 2292679 2293296 D PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA 2292679..2293296 Acidiphilium cryptum JF-5 5162183 YP_001235201.1 CDS Acry_2083 NC_009484.1 2293417 2294679 D PFAM: Paraquat-inducible protein A; paraquat-inducible protein A 2293417..2294679 Acidiphilium cryptum JF-5 5162429 YP_001235202.1 CDS Acry_2084 NC_009484.1 2294672 2296297 D PFAM: Mammalian cell entry related domain protein; hypothetical protein 2294672..2296297 Acidiphilium cryptum JF-5 5162379 YP_001235203.1 CDS Acry_2085 NC_009484.1 2296297 2296851 D PFAM: protein of unknown function DUF330; hypothetical protein 2296297..2296851 Acidiphilium cryptum JF-5 5162380 YP_001235204.1 CDS Acry_2086 NC_009484.1 2296859 2297578 R PFAM: protein phosphatase 2C domain protein; protein phosphatase 2C domain-containing protein complement(2296859..2297578) Acidiphilium cryptum JF-5 5161564 YP_001235205.1 CDS Acry_2087 NC_009484.1 2297575 2298105 R hypothetical protein complement(2297575..2298105) Acidiphilium cryptum JF-5 5160428 YP_001235206.1 CDS Acry_2088 NC_009484.1 2298110 2301637 R PFAM: ImcF domain protein; protein of unknown function DUF1215; ImcF domain-containing protein complement(2298110..2301637) Acidiphilium cryptum JF-5 5160429 YP_001235207.1 CDS Acry_2089 NC_009484.1 2301634 2303004 R PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(2301634..2303004) Acidiphilium cryptum JF-5 5161688 YP_001235208.1 CDS Acry_2090 NC_009484.1 2303015 2304346 R PFAM: protein of unknown function DUF876; hypothetical protein complement(2303015..2304346) Acidiphilium cryptum JF-5 5161764 YP_001235209.1 CDS Acry_2091 NC_009484.1 2304353 2304823 R hypothetical protein complement(2304353..2304823) Acidiphilium cryptum JF-5 5161765 YP_001235210.1 CDS Acry_2092 NC_009484.1 2304820 2306211 R PFAM: Forkhead-associated protein; FHA domain-containing protein complement(2304820..2306211) Acidiphilium cryptum JF-5 5161841 YP_001235211.1 CDS Acry_2093 NC_009484.1 2306208 2306789 R hypothetical protein complement(2306208..2306789) Acidiphilium cryptum JF-5 5161863 YP_001235212.1 CDS Acry_2094 NC_009484.1 2306806 2308746 R PFAM: Rhs element Vgr protein; Gp5 domain protein; Rhs element Vgr protein complement(2306806..2308746) Acidiphilium cryptum JF-5 5161864 YP_001235213.1 CDS Acry_2095 NC_009484.1 2309099 2310877 D PFAM: surface antigen variable number repeat protein; Polypeptide-transport-associated domain protein, ShlB-type; polypeptide-transport-associated domain-containing protein 2309099..2310877 Acidiphilium cryptum JF-5 5161855 YP_001235214.1 CDS Acry_2096 NC_009484.1 2311036 2319699 D TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: Haemagluttinin repeat-containing protein; filamentous haemagglutinin domain protein; filamentous hemagglutinin outer membrane protein 2311036..2319699 Acidiphilium cryptum JF-5 5161880 YP_001235215.1 CDS Acry_2097 NC_009484.1 2319702 2322776 D hypothetical protein 2319702..2322776 Acidiphilium cryptum JF-5 5161881 YP_001235216.1 CDS Acry_2098 NC_009484.1 2322812 2324674 D PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; protein kinase 2322812..2324674 Acidiphilium cryptum JF-5 5161866 YP_001235217.1 CDS Acry_2099 NC_009484.1 2324679 2325050 R PFAM: cytochrome c, class I; cytochrome c, class I complement(2324679..2325050) Acidiphilium cryptum JF-5 5161913 YP_001235218.1 CDS Acry_2100 NC_009484.1 2325102 2326451 R hypothetical protein complement(2325102..2326451) Acidiphilium cryptum JF-5 5161914 YP_001235219.1 CDS Acry_2101 NC_009484.1 2326565 2328442 D TIGRFAM: ATP-dependent DNA helicase, RecQ family; ATP-dependent DNA helicase RecQ; PFAM: helicase domain protein; HRDC domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; ATP-dependent DNA helicase RecQ 2326565..2328442 Acidiphilium cryptum JF-5 5161766 YP_001235220.1 CDS Acry_2102 NC_009484.1 2328439 2329122 D PFAM: cyclic nucleotide-binding; regulatory protein, Crp; CRP/FNR family transcriptional regulator 2328439..2329122 Acidiphilium cryptum JF-5 5161806 YP_001235221.1 CDS Acry_2103 NC_009484.1 2329204 2330499 D TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; O-acetylhomoserine/O-acetylserine sulfhydrylase 2329204..2330499 Acidiphilium cryptum JF-5 5161807 YP_001235222.1 CDS pepN NC_009484.1 2330552 2333215 R TIGRFAM: aminopeptidase N; PFAM: peptidase M1, membrane alanine aminopeptidase; peptidase M61 domain protein; aminopeptidase N complement(2330552..2333215) Acidiphilium cryptum JF-5 5161715 YP_001235223.1 CDS Acry_2105 NC_009484.1 2333241 2334557 D PFAM: protein of unknown function DUF482; hypothetical protein 2333241..2334557 Acidiphilium cryptum JF-5 5161189 YP_001235224.1 CDS Acry_2106 NC_009484.1 2334554 2335420 D PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 2334554..2335420 Acidiphilium cryptum JF-5 5161190 YP_001235225.1 CDS Acry_2107 NC_009484.1 2335381 2335761 R PFAM: CsbD family protein; CsbD family protein complement(2335381..2335761) Acidiphilium cryptum JF-5 5161938 YP_001235226.1 CDS Acry_2108 NC_009484.1 2335973 2337181 R PFAM: transposase, mutator type; transposase, mutator type complement(2335973..2337181) Acidiphilium cryptum JF-5 5161823 YP_001235227.1 CDS Acry_2109 NC_009484.1 2337408 2339021 D PFAM: amino acid permease-associated region; amino acid permease-associated protein 2337408..2339021 Acidiphilium cryptum JF-5 5161824 YP_001235228.1 CDS Acry_2110 NC_009484.1 2339112 2339729 D PFAM: pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN-binding protein 2339112..2339729 Acidiphilium cryptum JF-5 5162457 YP_001235229.1 CDS Acry_2111 NC_009484.1 2339739 2340338 R PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(2339739..2340338) Acidiphilium cryptum JF-5 5162251 YP_001235230.1 CDS Acry_2112 NC_009484.1 2340459 2341520 R PFAM: aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(2340459..2341520) Acidiphilium cryptum JF-5 5162252 YP_001235231.1 CDS Acry_2113 NC_009484.1 2341699 2342979 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 2341699..2342979 Acidiphilium cryptum JF-5 5162445 YP_001235232.1 CDS Acry_2114 NC_009484.1 2342979 2343953 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 2342979..2343953 Acidiphilium cryptum JF-5 5161700 YP_001235233.1 CDS Acry_2115 NC_009484.1 2343950 2344828 D probable dehydrogenase; hypothetical protein 2343950..2344828 Acidiphilium cryptum JF-5 5161701 YP_001235234.1 CDS Acry_2116 NC_009484.1 2344836 2345774 R TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein domain protein; thiamine-monophosphate kinase complement(2344836..2345774) Acidiphilium cryptum JF-5 5162240 YP_001235235.1 CDS Acry_2117 NC_009484.1 2345776 2346273 R TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; NusB antitermination factor complement(2345776..2346273) Acidiphilium cryptum JF-5 5159867 YP_001235236.1 CDS Acry_2118 NC_009484.1 2346270 2346752 R PFAM: 6,7-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase complement(2346270..2346752) Acidiphilium cryptum JF-5 5159868 YP_001235237.1 CDS Acry_2119 NC_009484.1 2346749 2347876 R PFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; 3,4-dihydroxy-2-butanone 4-phosphate synthase complement(2346749..2347876) Acidiphilium cryptum JF-5 5159946 YP_001235238.1 CDS Acry_2120 NC_009484.1 2347876 2348490 R catalyzes the formation of riboflavin from 6,7-dimethyl-8-(1-D-ribityl)lumazine; riboflavin synthase subunit alpha complement(2347876..2348490) Acidiphilium cryptum JF-5 5161409 YP_001235239.1 CDS Acry_2121 NC_009484.1 2348494 2349585 R TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: CMP/dCMP deaminase, zinc-binding; bifunctional deaminase-reductase domain protein; riboflavin biosynthesis protein RibD complement(2348494..2349585) Acidiphilium cryptum JF-5 5161410 YP_001235240.1 CDS nrdR NC_009484.1 2349588 2350043 R PFAM: ATP-cone domain protein; transcriptional regulator NrdR complement(2349588..2350043) Acidiphilium cryptum JF-5 5159624 YP_001235241.1 CDS glyA NC_009484.1 2350050 2351348 R catalyzes the reaction of glycine with 5,10-methylenetetrahydrofolate to form L-serine and tetrahydrofolate; serine hydroxymethyltransferase complement(2350050..2351348) Acidiphilium cryptum JF-5 5162416 YP_001235242.1 CDS Acry_2124 NC_009484.1 2351345 2351797 R TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase complement(2351345..2351797) Acidiphilium cryptum JF-5 5162417 YP_001235243.1 CDS Acry_2125 NC_009484.1 2352050 2352235 D PFAM: protein of unknown function DUF343; hypothetical protein 2352050..2352235 Acidiphilium cryptum JF-5 5162102 YP_001235244.1 CDS Acry_2126 NC_009484.1 2352232 2352594 D PFAM: protein of unknown function DUF971; hypothetical protein 2352232..2352594 Acidiphilium cryptum JF-5 5161996 YP_001235245.1 CDS Acry_2127 NC_009484.1 2352742 2353677 D PFAM: Thioredoxin domain; thioredoxin domain-containing protein 2352742..2353677 Acidiphilium cryptum JF-5 5161997 YP_001235246.1 CDS Acry_2128 NC_009484.1 2353692 2354345 D PFAM: peptidase S16, lon domain protein; peptidase S16, lon domain-containing protein 2353692..2354345 Acidiphilium cryptum JF-5 5162120 YP_001235247.1 CDS Acry_2129 NC_009484.1 2354353 2355360 R PFAM: type III secretion exporter; type III secretion exporter complement(2354353..2355360) Acidiphilium cryptum JF-5 5162153 YP_001235248.1 CDS Acry_2130 NC_009484.1 2355464 2356243 R PFAM: type III secretion system inner membrane R protein; type III secretion system inner membrane R protein complement(2355464..2356243) Acidiphilium cryptum JF-5 5162154 YP_001235249.1 CDS Acry_2131 NC_009484.1 2356246 2356512 R PFAM: export protein FliQ, family 3; export protein FliQ complement(2356246..2356512) Acidiphilium cryptum JF-5 5162128 YP_001235250.1 CDS Acry_2132 NC_009484.1 2356588 2356890 R PFAM: flagellar hook-basal body complex protein FliE; flagellar hook-basal body complex protein FliE complement(2356588..2356890) Acidiphilium cryptum JF-5 5162112 YP_001235251.1 CDS flgC NC_009484.1 2356890 2357294 R with FlgF and B makes up the proximal portion of the flagellar basal body rod; flagellar basal body rod protein FlgC complement(2356890..2357294) Acidiphilium cryptum JF-5 5162113 YP_001235252.1 CDS Acry_2134 NC_009484.1 2357311 2357691 R flagellar basal body protein-like protein complement(2357311..2357691) Acidiphilium cryptum JF-5 5162127 YP_001235253.1 CDS fliP NC_009484.1 2358178 2358939 D FliP, with proteins FliQ and FliR, forms the core of the central channel in the flagella export apparatus; flagellar biosynthesis protein FliP 2358178..2358939 Acidiphilium cryptum JF-5 5162165 YP_001235254.1 CDS Acry_2136 NC_009484.1 2358979 2360376 R PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase complement(2358979..2360376) Acidiphilium cryptum JF-5 5162166 YP_001235255.1 CDS Acry_2137 NC_009484.1 2360382 2361311 R PFAM: Patatin; patatin complement(2360382..2361311) Acidiphilium cryptum JF-5 5162148 YP_001235256.1 CDS Acry_2138 NC_009484.1 2361529 2361663 D PFAM: ribosomal protein L34; 50S ribosomal protein L34 2361529..2361663 Acidiphilium cryptum JF-5 5160244 YP_001235257.1 CDS Acry_2139 NC_009484.1 2361731 2362093 D TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; ribonuclease P protein component 2361731..2362093 Acidiphilium cryptum JF-5 5160245 YP_001235258.1 CDS Acry_2140 NC_009484.1 2362090 2362344 D PFAM: protein of unknown function DUF37; hypothetical protein 2362090..2362344 Acidiphilium cryptum JF-5 5161961 YP_001235259.1 CDS Acry_2141 NC_009484.1 2362337 2364142 D PFAM: 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein 2362337..2364142 Acidiphilium cryptum JF-5 5159813 YP_001235260.1 CDS engB NC_009484.1 2364153 2364782 D binds guanine nucleotides; in Escherichia coli depletion results in defective cell division and filamentation; in Bacillus subtilis this gene is essential; ribosome biogenesis GTP-binding protein YsxC 2364153..2364782 Acidiphilium cryptum JF-5 5159814 YP_001235261.1 CDS Acry_2143 NC_009484.1 2364831 2365841 D catalyzes the phosphorylation of N-acetyl-L-glutamate to form N-acetyl-L-glutamate 5-phosphate; acetylglutamate kinase 2364831..2365841 Acidiphilium cryptum JF-5 5162081 YP_001235262.1 CDS Acry_2144 NC_009484.1 2365893 2367563 R PFAM: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(2365893..2367563) Acidiphilium cryptum JF-5 5162031 YP_001235263.1 CDS Acry_2145 NC_009484.1 2367711 2369003 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; hypothetical protein complement(2367711..2369003) Acidiphilium cryptum JF-5 5162032 YP_001235264.1 CDS Acry_2146 NC_009484.1 2369211 2371922 D PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 2369211..2371922 Acidiphilium cryptum JF-5 5162064 YP_001235265.1 CDS Acry_2147 NC_009484.1 2371998 2373110 R catalyzes the oxidation of 3-isopropylmalate to 3-carboxy-4-methyl-2-oxopentanoate in leucine biosynthesis; 3-isopropylmalate dehydrogenase complement(2371998..2373110) Acidiphilium cryptum JF-5 5162047 YP_001235266.1 CDS Acry_2148 NC_009484.1 2373164 2373787 R TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase small subunit complement(2373164..2373787) Acidiphilium cryptum JF-5 5162048 YP_001235267.1 CDS Acry_2149 NC_009484.1 2373784 2375184 R dehydratase component, catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate; isopropylmalate isomerase large subunit complement(2373784..2375184) Acidiphilium cryptum JF-5 5162066 YP_001235268.1 CDS rplS NC_009484.1 2375410 2375784 R this protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site; 50S ribosomal protein L19 complement(2375410..2375784) Acidiphilium cryptum JF-5 5162513 YP_001235269.1 CDS Acry_2151 NC_009484.1 2375812 2376516 R TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase complement(2375812..2376516) Acidiphilium cryptum JF-5 5162514 YP_001235270.1 CDS Acry_2152 NC_009484.1 2376513 2377022 R TIGRFAM: 16S rRNA processing protein RimM; PFAM: PRC-barrel domain protein; 16S rRNA processing protein RimM complement(2376513..2377022) Acidiphilium cryptum JF-5 5162512 YP_001235271.1 CDS rpsP NC_009484.1 2377038 2377382 R binds to lower part of 30S body where it stabilizes two domains; required for efficient assembly of 30S; in Escherichia coli this protein has nuclease activity; 30S ribosomal protein S16 complement(2377038..2377382) Acidiphilium cryptum JF-5 5160142 YP_001235272.1 CDS Acry_2154 NC_009484.1 2377538 2378911 R TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54, G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle protein complement(2377538..2378911) Acidiphilium cryptum JF-5 5160143 YP_001235273.1 CDS Acry_2155 NC_009484.1 2379081 2380499 R PFAM: NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase complement(2379081..2380499) Acidiphilium cryptum JF-5 5162430 YP_001235274.1 CDS Acry_2156 NC_009484.1 2380513 2380908 R NAD/NADP transhydrogenase subunit alpha-like protein complement(2380513..2380908) Acidiphilium cryptum JF-5 5162151 YP_001235275.1 CDS Acry_2157 NC_009484.1 2380919 2382061 R PFAM: alanine dehydrogenase/PNT domain protein; NAD(P) transhydrogenase subunit alpha complement(2380919..2382061) Acidiphilium cryptum JF-5 5162152 YP_001235276.1 CDS Acry_2158 NC_009484.1 2382291 2382941 D hydrolyzes proteins to small peptides; with the ATPase subunits ClpA or ClpX, ClpP degrades specific substrates; ATP-dependent Clp protease proteolytic subunit 2382291..2382941 Acidiphilium cryptum JF-5 5162122 YP_001235277.1 CDS Acry_2159 NC_009484.1 2382962 2383873 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2382962..2383873) Acidiphilium cryptum JF-5 5162146 YP_001235278.1 CDS Acry_2160 NC_009484.1 2384032 2384577 D hypothetical protein 2384032..2384577 Acidiphilium cryptum JF-5 5162147 YP_001235279.1 CDS Acry_2161 NC_009484.1 2384650 2385549 D PFAM: GntR domain protein; GntR family transcriptional regulator 2384650..2385549 Acidiphilium cryptum JF-5 5162111 YP_001235280.1 CDS Acry_2162 NC_009484.1 2385571 2387085 R PFAM: peptidase M32, carboxypeptidase Taq metallopeptidase; carboxypeptidase Taq complement(2385571..2387085) Acidiphilium cryptum JF-5 5162443 YP_001235281.1 CDS Acry_2163 NC_009484.1 2387082 2387798 R hypothetical protein complement(2387082..2387798) Acidiphilium cryptum JF-5 5162444 YP_001235282.1 CDS Acry_2164 NC_009484.1 2387803 2388654 R PFAM: cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III complement(2387803..2388654) Acidiphilium cryptum JF-5 5162468 YP_001235283.1 CDS Acry_2165 NC_009484.1 2388873 2389826 R converts protoheme IX and farnesyl diphosphate to heme O; protoheme IX farnesyltransferase complement(2388873..2389826) Acidiphilium cryptum JF-5 5162027 YP_001235284.1 CDS Acry_2166 NC_009484.1 2389946 2391544 R PFAM: cytochrome c oxidase, subunit I; cytochrome-c oxidase complement(2389946..2391544) Acidiphilium cryptum JF-5 5162028 YP_001235285.1 CDS Acry_2167 NC_009484.1 2391578 2392528 R PFAM: cytochrome c oxidase, subunit II; cytochrome C oxidase subunit II, transmembrane region; cytochrome c oxidase subunit II complement(2391578..2392528) Acidiphilium cryptum JF-5 5162051 YP_001235286.1 CDS Acry_2168 NC_009484.1 2392691 2393404 R PFAM: Methionine biosynthesis MetW protein; Methyltransferase type 11; Methyltransferase type 12; phosphatidylethanolamine N-methyltransferase complement(2392691..2393404) Acidiphilium cryptum JF-5 5162025 YP_001235287.1 CDS Acry_2169 NC_009484.1 2393590 2394117 R PFAM: GcrA cell cycle regulator; GcrA cell cycle regulator complement(2393590..2394117) Acidiphilium cryptum JF-5 5162026 YP_001235288.1 CDS Acry_2170 NC_009484.1 2394233 2394766 R PFAM: protein of unknown function DUF1058; hypothetical protein complement(2394233..2394766) Acidiphilium cryptum JF-5 5162033 YP_001235289.1 CDS Acry_2171 NC_009484.1 2394753 2395520 R PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; UBA/THIF-type NAD/FAD binding protein complement(2394753..2395520) Acidiphilium cryptum JF-5 5162029 YP_001235290.1 CDS Acry_2173 NC_009484.1 2396626 2398038 D 2-nitropropane dioxygenase 2396626..2398038 Acidiphilium cryptum JF-5 5162116 YP_001235291.1 CDS Acry_2174 NC_009484.1 2398168 2400522 R PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase complement(2398168..2400522) Acidiphilium cryptum JF-5 5161988 YP_001235292.1 CDS Acry_2175 NC_009484.1 2400519 2401004 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(2400519..2401004) Acidiphilium cryptum JF-5 5162213 YP_001235293.1 CDS Acry_2176 NC_009484.1 2400989 2401816 R PFAM: molybdopterin dehydrogenase, FAD-binding; molybdopterin dehydrogenase complement(2400989..2401816) Acidiphilium cryptum JF-5 5162214 YP_001235294.1 CDS Acry_2177 NC_009484.1 2401884 2403209 R PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter complement(2401884..2403209) Acidiphilium cryptum JF-5 5162509 YP_001235295.1 CDS Acry_2178 NC_009484.1 2403597 2404961 R PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase complement(2403597..2404961) Acidiphilium cryptum JF-5 5161710 YP_001235296.1 CDS Acry_2179 NC_009484.1 2404958 2405746 R PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator complement(2404958..2405746) Acidiphilium cryptum JF-5 5161711 YP_001235297.1 CDS Acry_2180 NC_009484.1 2405980 2407110 D PFAM: Orn/DAP/Arg decarboxylase 2; Orn/DAP/Arg decarboxylase 2 2405980..2407110 Acidiphilium cryptum JF-5 5161642 YP_001235298.1 CDS Acry_2181 NC_009484.1 2407144 2407896 D PFAM: dienelactone hydrolase; carboxymethylenebutenolidase 2407144..2407896 Acidiphilium cryptum JF-5 5161675 YP_001235299.1 CDS Acry_2182 NC_009484.1 2407899 2409122 D hypothetical protein 2407899..2409122 Acidiphilium cryptum JF-5 5161676 YP_001235300.1 CDS Acry_2183 NC_009484.1 2409226 2412213 D PFAM: glycosyl transferase, family 2; glycosyl transferase family protein 2409226..2412213 Acidiphilium cryptum JF-5 5161348 YP_001235301.1 CDS Acry_2184 NC_009484.1 2412315 2414981 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(2412315..2414981) Acidiphilium cryptum JF-5 5161316 YP_001235302.1 CDS Acry_2185 NC_009484.1 2414989 2417160 R glycine--tRNA ligase complement(2414989..2417160) Acidiphilium cryptum JF-5 5161317 YP_001235303.1 CDS glyQ NC_009484.1 2417153 2418058 R glycine--tRNA ligase alpha chain; GlyRS; class II aminoacyl tRNA synthetase; tetramer of alpha(2)beta(2); catalyzes a two-step reaction; first charging a glycine molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA; glycyl-tRNA synthetase subunit alpha complement(2417153..2418058) Acidiphilium cryptum JF-5 5161436 YP_001235304.1 CDS Acry_2187 NC_009484.1 2418126 2418530 D hypothetical protein 2418126..2418530 Acidiphilium cryptum JF-5 5161331 YP_001235305.1 CDS Acry_2188 NC_009484.1 2418517 2419689 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 2418517..2419689 Acidiphilium cryptum JF-5 5161332 YP_001235306.1 CDS Acry_2189 NC_009484.1 2419751 2420707 D TIGRFAM: acetyl-CoA carboxylase, carboxyl transferase, alpha subunit; PFAM: acetyl-CoA carboxylase, alpha subunit; acetyl-CoA carboxylase, carboxyl transferase subunit alpha 2419751..2420707 Acidiphilium cryptum JF-5 5162553 YP_001235307.1 CDS Acry_2190 NC_009484.1 2420804 2421424 D hypothetical protein 2420804..2421424 Acidiphilium cryptum JF-5 5162576 YP_001235308.1 CDS Acry_2191 NC_009484.1 2421470 2422333 R catalyzes the formation of spermidine from putrescine and S-adenosylmethioninamine; spermidine synthase complement(2421470..2422333) Acidiphilium cryptum JF-5 5162577 YP_001235309.1 CDS Acry_2192 NC_009484.1 2422403 2422867 R PFAM: S-adenosylmethionine decarboxylase related; S-adenosylmethionine decarboxylase-like protein complement(2422403..2422867) Acidiphilium cryptum JF-5 5161049 YP_001235310.1 CDS Acry_2193 NC_009484.1 2423034 2423792 R hypothetical protein complement(2423034..2423792) Acidiphilium cryptum JF-5 5161076 YP_001235311.1 CDS Acry_2194 NC_009484.1 2423851 2424990 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 2423851..2424990 Acidiphilium cryptum JF-5 5161077 YP_001235312.1 CDS Acry_2195 NC_009484.1 2424987 2425925 D PFAM: glycosyl transferase, family 9; glycosyl transferase family protein 2424987..2425925 Acidiphilium cryptum JF-5 5162539 YP_001235313.1 CDS thrS NC_009484.1 2425937 2427859 D catalyzes a two-step reaction, first charging a threonine molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; catalyzes the formation of threonyl-tRNA(Thr) from threonine and tRNA(Thr); threonyl-tRNA synthetase 2425937..2427859 Acidiphilium cryptum JF-5 5162563 YP_001235314.1 CDS Acry_2197 NC_009484.1 2428135 2428776 D hypothetical protein 2428135..2428776 Acidiphilium cryptum JF-5 5162564 YP_001235315.1 CDS Acry_2198 NC_009484.1 2428944 2429531 D hypothetical protein 2428944..2429531 Acidiphilium cryptum JF-5 5160373 YP_001235316.1 CDS Acry_2199 NC_009484.1 2429554 2430375 R TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: regulatory protein, IclR; beta-ketoadipate transcriptional regulator, PcaR/PcaU/PobR; beta-ketoadipate pathway transcription regulator complement(2429554..2430375) Acidiphilium cryptum JF-5 5160803 YP_001235317.1 CDS Acry_2200 NC_009484.1 2430570 2431055 R PFAM: OsmC family protein; OsmC family protein complement(2430570..2431055) Acidiphilium cryptum JF-5 5160804 YP_001235318.1 CDS Acry_2201 NC_009484.1 2431094 2431795 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2431094..2431795) Acidiphilium cryptum JF-5 5160190 YP_001235319.1 CDS Acry_2202 NC_009484.1 2431800 2432507 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2431800..2432507) Acidiphilium cryptum JF-5 5162542 YP_001235320.1 CDS Acry_2203 NC_009484.1 2432497 2433405 R PFAM: inner-membrane translocator; inner-membrane translocator complement(2432497..2433405) Acidiphilium cryptum JF-5 5162543 YP_001235321.1 CDS Acry_2204 NC_009484.1 2433419 2434300 R PFAM: inner-membrane translocator; inner-membrane translocator complement(2433419..2434300) Acidiphilium cryptum JF-5 5159862 YP_001235322.1 CDS Acry_2205 NC_009484.1 2434402 2435658 R PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(2434402..2435658) Acidiphilium cryptum JF-5 5159799 YP_001235323.1 CDS Acry_2206 NC_009484.1 2435779 2436795 R hypothetical protein complement(2435779..2436795) Acidiphilium cryptum JF-5 5159800 YP_001235324.1 CDS Acry_2207 NC_009484.1 2436881 2437147 D hypothetical protein 2436881..2437147 Acidiphilium cryptum JF-5 5160599 YP_001235325.1 CDS Acry_2208 NC_009484.1 2437362 2439671 D catalyzes the transfer of a methyl group from 5-methyltetrahydrofolate to homocysteine to form methionine; 5- methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase 2437362..2439671 Acidiphilium cryptum JF-5 5159808 YP_001235326.1 CDS Acry_2209 NC_009484.1 2439791 2440972 D PFAM: major facilitator superfamily MFS_1; major facilitator superfamily transporter 2439791..2440972 Acidiphilium cryptum JF-5 5159809 YP_001235327.1 CDS Acry_2210 NC_009484.1 2441086 2442816 D catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase 2441086..2442816 Acidiphilium cryptum JF-5 5160208 YP_001235328.1 CDS Acry_2211 NC_009484.1 2442923 2445298 D PFAM: aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead; aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; carbon-monoxide dehydrogenase 2442923..2445298 Acidiphilium cryptum JF-5 5160115 YP_001235329.1 CDS Acry_2212 NC_009484.1 2445358 2446101 R PFAM: glycosyl transferase, family 2; glycosyl transferase family protein complement(2445358..2446101) Acidiphilium cryptum JF-5 5160116 YP_001235330.1 CDS Acry_2213 NC_009484.1 2446312 2447298 R PFAM: inner-membrane translocator; monosaccharide-transporting ATPase complement(2446312..2447298) Acidiphilium cryptum JF-5 5159930 YP_001235331.1 CDS Acry_2214 NC_009484.1 2447295 2448278 R PFAM: inner-membrane translocator; monosaccharide-transporting ATPase complement(2447295..2448278) Acidiphilium cryptum JF-5 5160022 YP_001235332.1 CDS Acry_2215 NC_009484.1 2448275 2449804 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2448275..2449804) Acidiphilium cryptum JF-5 5160023 YP_001235333.1 CDS Acry_2216 NC_009484.1 2449820 2450857 R PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(2449820..2450857) Acidiphilium cryptum JF-5 5160148 YP_001235334.1 CDS Acry_2217 NC_009484.1 2451299 2451700 R DNA replication protein-like protein complement(2451299..2451700) Acidiphilium cryptum JF-5 5160252 YP_001235335.1 CDS Acry_2218 NC_009484.1 2451894 2452499 R PFAM: transcriptional regulator PadR family protein; PadR-like family transcriptional regulator complement(2451894..2452499) Acidiphilium cryptum JF-5 5160253 YP_001235336.1 CDS Acry_2219 NC_009484.1 2452764 2453012 R CopG/Arc/MetJ family transcriptional regulator complement(2452764..2453012) Acidiphilium cryptum JF-5 5161828 YP_001235337.1 CDS Acry_2220 NC_009484.1 2453275 2453562 D hypothetical protein 2453275..2453562 Acidiphilium cryptum JF-5 5162486 YP_001235338.1 CDS Acry_2222 NC_009484.1 2454391 2455080 R hypothetical protein complement(2454391..2455080) Acidiphilium cryptum JF-5 5162004 YP_001235339.1 CDS Acry_2223 NC_009484.1 2455386 2455922 R hypothetical protein complement(2455386..2455922) Acidiphilium cryptum JF-5 5162484 YP_001235340.1 CDS Acry_2225 NC_009484.1 2456273 2456566 R hypothetical protein complement(2456273..2456566) Acidiphilium cryptum JF-5 5162005 YP_001235341.1 CDS Acry_2226 NC_009484.1 2456767 2457048 R hypothetical protein complement(2456767..2457048) Acidiphilium cryptum JF-5 5162358 YP_001235342.1 CDS Acry_2227 NC_009484.1 2457060 2458406 D PFAM: transposase, IS4 family protein; transposase, IS4 family protein 2457060..2458406 Acidiphilium cryptum JF-5 5162248 YP_001235343.1 CDS Acry_2228 NC_009484.1 2458551 2459771 R PFAM: peptidase M20; peptidase dimerisation domain protein; peptidase dimerisation domain-containing protein complement(2458551..2459771) Acidiphilium cryptum JF-5 5159747 YP_001235344.1 CDS Acry_2229 NC_009484.1 2459773 2460960 R TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; amidohydrolase complement(2459773..2460960) Acidiphilium cryptum JF-5 5159748 YP_001235345.1 CDS Acry_2230 NC_009484.1 2461609 2462079 R hypothetical protein complement(2461609..2462079) Acidiphilium cryptum JF-5 5159955 YP_001235346.1 CDS Acry_2231 NC_009484.1 2462369 2463277 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2462369..2463277) Acidiphilium cryptum JF-5 5159999 YP_001235347.1 CDS Acry_2232 NC_009484.1 2463377 2464138 D PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2463377..2464138 Acidiphilium cryptum JF-5 5160000 YP_001235348.1 CDS Acry_2233 NC_009484.1 2464288 2464965 D PFAM: Asp/Glu racemase; Asp/Glu racemase 2464288..2464965 Acidiphilium cryptum JF-5 5162231 YP_001235349.1 CDS Acry_2234 NC_009484.1 2465204 2466130 D catalyzes the formation of 2-oxobutanoate from L-threonine; threonine dehydratase 2465204..2466130 Acidiphilium cryptum JF-5 5160239 YP_001235350.1 CDS Acry_2236 NC_009484.1 2467182 2468168 R PFAM: inner-membrane translocator; monosaccharide-transporting ATPase complement(2467182..2468168) Acidiphilium cryptum JF-5 5162039 YP_001235351.1 CDS Acry_2237 NC_009484.1 2468165 2469148 R PFAM: inner-membrane translocator; monosaccharide-transporting ATPase complement(2468165..2469148) Acidiphilium cryptum JF-5 5160223 YP_001235352.1 CDS Acry_2238 NC_009484.1 2469145 2470659 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2469145..2470659) Acidiphilium cryptum JF-5 5160625 YP_001235353.1 CDS Acry_2239 NC_009484.1 2470665 2471696 R PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(2470665..2471696) Acidiphilium cryptum JF-5 5160626 YP_001235354.1 CDS Acry_2240 NC_009484.1 2471963 2472751 D PFAM: regulatory protein, IclR; regulatory protein, IclR 2471963..2472751 Acidiphilium cryptum JF-5 5161991 YP_001235355.1 CDS Acry_2241 NC_009484.1 2473227 2475167 D PFAM: penicillin-binding protein, transpeptidase; Penicillin-binding protein, dimerisation domain; peptidoglycan glycosyltransferase 2473227..2475167 Acidiphilium cryptum JF-5 5160656 YP_001235356.1 CDS Acry_2242 NC_009484.1 2475225 2475914 D PFAM: regulatory protein GntR, HTH; GntR domain protein; GntR family transcriptional regulator 2475225..2475914 Acidiphilium cryptum JF-5 5160657 YP_001235357.1 CDS Acry_2243 NC_009484.1 2476217 2476780 R PFAM: beta-Ig-H3/fasciclin; beta-Ig-H3/fasciclin complement(2476217..2476780) Acidiphilium cryptum JF-5 5161788 YP_001235358.1 CDS argJ NC_009484.1 2476936 2478165 R bifunctional arginine biosynthesis protein ArgJ; functions at the 1st and 5th steps in arginine biosynthesis; involved in synthesis of acetylglutamate from glutamate and acetyl-CoA and ornithine by transacetylation between acetylornithine and glutmate; bifunctional ornithine acetyltransferase/N-acetylglutamate synthase complement(2476936..2478165) Acidiphilium cryptum JF-5 5160929 YP_001235359.1 CDS Acry_2245 NC_009484.1 2478176 2479111 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(2478176..2479111) Acidiphilium cryptum JF-5 5160930 YP_001235360.1 CDS secA NC_009484.1 2479294 2482113 D functions in protein export; can interact with acidic membrane phospholipids and the SecYEG protein complex; binds to preproteins; binds to ATP and undergoes a conformational change to promote membrane insertion of SecA/bound preprotein; ATP hydrolysis appears to drive release of the preprotein from SecA and deinsertion of SecA from the membrane; additional proteins SecD/F/YajC aid SecA recycling; exists in an equilibrium between monomers and dimers; may possibly form higher order oligomers; proteins in this cluster correspond SecA1; SecA2 is not essential and seems to play a role in secretion of a subset of proteins; preprotein translocase subunit SecA 2479294..2482113 Acidiphilium cryptum JF-5 5161811 YP_001235361.1 CDS Acry_2247 NC_009484.1 2482118 2482648 D hypothetical protein 2482118..2482648 Acidiphilium cryptum JF-5 5161972 YP_001235362.1 CDS Acry_2248 NC_009484.1 2482744 2483208 R PFAM: regulatory protein, MarR; transcriptional regulator TrmB; transcriptional regulator TrmB complement(2482744..2483208) Acidiphilium cryptum JF-5 5161973 YP_001235363.1 CDS rpsI NC_009484.1 2483365 2483856 R forms a direct contact with the tRNA during translation; 30S ribosomal protein S9 complement(2483365..2483856) Acidiphilium cryptum JF-5 5162101 YP_001235364.1 CDS rplM NC_009484.1 2483859 2484335 R in Escherichia coli this protein is one of the earliest assembly proteins in the large subunit; 50S ribosomal protein L13 complement(2483859..2484335) Acidiphilium cryptum JF-5 5162089 YP_001235365.1 CDS Acry_2251 NC_009484.1 2484427 2485359 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase complement(2484427..2485359) Acidiphilium cryptum JF-5 5162090 YP_001235366.1 CDS Acry_2252 NC_009484.1 2485385 2485978 R TIGRFAM: polyhydroxyalkanoate synthesis repressor PhaR; PFAM: PHB accumulation regulatory domain protein; PHA accumulation regulator DNA-binding protein; polyhydroxyalkonate synthesis repressor PhaR complement(2485385..2485978) Acidiphilium cryptum JF-5 5162562 YP_001235367.1 CDS Acry_2253 NC_009484.1 2486088 2486858 R PFAM: protein of unknown function DUF81; hypothetical protein complement(2486088..2486858) Acidiphilium cryptum JF-5 5162350 YP_001235368.1 CDS Acry_2254 NC_009484.1 2486931 2487329 D hypothetical protein 2486931..2487329 Acidiphilium cryptum JF-5 5162351 YP_001235369.1 CDS Acry_2255 NC_009484.1 2487343 2488338 D PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 2487343..2488338 Acidiphilium cryptum JF-5 5162119 YP_001235370.1 CDS Acry_2256 NC_009484.1 2488395 2489567 D TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 2488395..2489567 Acidiphilium cryptum JF-5 5162009 YP_001235371.1 CDS Acry_2257 NC_009484.1 2489592 2490293 D TIGRFAM: 3-oxoacid CoA-transferase, A subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit A 2489592..2490293 Acidiphilium cryptum JF-5 5162010 YP_001235372.1 CDS Acry_2258 NC_009484.1 2490304 2490984 D TIGRFAM: 3-oxoacid CoA-transferase, B subunit; PFAM: coenzyme A transferase; 3-oxoacid CoA-transferase subunit B 2490304..2490984 Acidiphilium cryptum JF-5 5161945 YP_001235373.1 CDS Acry_2259 NC_009484.1 2490981 2492261 D TIGRFAM: 4-aminobutyrate aminotransferase; PFAM: aminotransferase, class I and II; aminotransferase class-III; 4-aminobutyrate aminotransferase 2490981..2492261 Acidiphilium cryptum JF-5 5160861 YP_001235374.1 CDS Acry_2260 NC_009484.1 2492268 2494301 R hypothetical protein complement(2492268..2494301) Acidiphilium cryptum JF-5 5160862 YP_001235375.1 CDS Acry_2261 NC_009484.1 2494355 2494741 R PFAM: protein of unknown function UPF0102; hypothetical protein complement(2494355..2494741) Acidiphilium cryptum JF-5 5159628 YP_001235376.1 CDS Acry_2262 NC_009484.1 2494956 2495837 D PFAM: helix-turn-helix domain protein; helix-turn-helix domain-containing protein 2494956..2495837 Acidiphilium cryptum JF-5 5161548 YP_001235377.1 CDS Acry_2263 NC_009484.1 2495890 2496744 D PFAM: Rhodanese domain protein; rhodanese domain-containing protein 2495890..2496744 Acidiphilium cryptum JF-5 5161549 YP_001235378.1 CDS Acry_2264 NC_009484.1 2496741 2497997 D TIGRFAM: cystathionine beta-lyase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; cystathionine beta-lyase 2496741..2497997 Acidiphilium cryptum JF-5 5162534 YP_001235379.1 CDS Acry_2265 NC_009484.1 2497994 2498344 D PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-AMP cyclohydrolase 2497994..2498344 Acidiphilium cryptum JF-5 5161579 YP_001235380.1 CDS Acry_2266 NC_009484.1 2498489 2498860 R TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; iron-sulfur cluster assembly accessory protein complement(2498489..2498860) Acidiphilium cryptum JF-5 5161580 YP_001235381.1 CDS Acry_2267 NC_009484.1 2498871 2499236 R PFAM: protein of unknown function DUF59; hypothetical protein complement(2498871..2499236) Acidiphilium cryptum JF-5 5162455 YP_001235382.1 CDS Acry_2268 NC_009484.1 2499226 2499681 R TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; NifU family SUF system FeS assembly protein complement(2499226..2499681) Acidiphilium cryptum JF-5 5162352 YP_001235383.1 CDS Acry_2269 NC_009484.1 2499678 2500922 R TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; SufS subfamily cysteine desulfurase complement(2499678..2500922) Acidiphilium cryptum JF-5 5162353 YP_001235384.1 CDS Acry_2270 NC_009484.1 2500919 2502118 R TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein; FeS assembly protein SufD complement(2500919..2502118) Acidiphilium cryptum JF-5 5161289 YP_001235385.1 CDS Acry_2271 NC_009484.1 2502115 2502858 R TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC complement(2502115..2502858) Acidiphilium cryptum JF-5 5159832 YP_001235386.1 CDS Acry_2272 NC_009484.1 2502868 2504319 R with SufCD activates cysteine desulfurase SufS; cysteine desulfurase activator complex subunit SufB complement(2502868..2504319) Acidiphilium cryptum JF-5 5159833 YP_001235387.1 CDS Acry_2273 NC_009484.1 2504499 2504792 R PFAM: protein of unknown function UPF0074; BadM/Rrf2 family transcriptional regulator complement(2504499..2504792) Acidiphilium cryptum JF-5 5160295 YP_001235388.1 CDS Acry_2274 NC_009484.1 2504917 2505567 R TIGRFAM: phosphoglycolate phosphatase ; HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoglycolate phosphatase complement(2504917..2505567) Acidiphilium cryptum JF-5 5160735 YP_001235389.1 CDS glmU NC_009484.1 2505640 2506953 D forms a homotrimer; catalyzes the acetylation of glucosamine-1-phosphate and uridylation of N-acetylglucosamine-1-phosphate to produce UDP-GlcNAc; function in cell wall synthesis; bifunctional N-acetylglucosamine-1-phosphate uridyltransferase/glucosamine-1-phosphate acetyltransferase 2505640..2506953 Acidiphilium cryptum JF-5 5160736 YP_001235390.1 CDS Acry_2276 NC_009484.1 2506953 2508776 D Catalyzes the first step in hexosamine metabolism, converting fructose-6P into glucosamine-6P using glutamine as a nitrogen source; glucosamine--fructose-6-phosphate aminotransferase 2506953..2508776 Acidiphilium cryptum JF-5 5160867 YP_001235391.1 CDS Acry_2277 NC_009484.1 2508851 2509501 R hypothetical protein complement(2508851..2509501) Acidiphilium cryptum JF-5 5161371 YP_001235392.1 CDS Acry_2278 NC_009484.1 2509554 2509718 D hypothetical protein 2509554..2509718 Acidiphilium cryptum JF-5 5161372 YP_001235393.1 CDS Acry_2279 NC_009484.1 2509890 2510189 R hypothetical protein complement(2509890..2510189) Acidiphilium cryptum JF-5 5161600 YP_001235394.1 CDS Acry_2280 NC_009484.1 2510365 2510853 R TIGRFAM: bacteriochlorophyll 4-vinyl reductase; PFAM: 4-vinyl reductase, 4VR; bacteriochlorophyll 4-vinyl reductase complement(2510365..2510853) Acidiphilium cryptum JF-5 5161280 YP_001235395.1 CDS Acry_2281 NC_009484.1 2510964 2512526 R TIGRFAM: magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase; PFAM: cobalamin B12-binding domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase complement(2510964..2512526) Acidiphilium cryptum JF-5 5161281 YP_001235396.1 CDS Acry_2282 NC_009484.1 2512789 2513097 R hypothetical protein complement(2512789..2513097) Acidiphilium cryptum JF-5 5161858 YP_001235397.1 CDS Acry_2283 NC_009484.1 2513175 2513567 D hypothetical protein 2513175..2513567 Acidiphilium cryptum JF-5 5161837 YP_001235398.1 CDS Acry_2284 NC_009484.1 2513607 2514044 D hypothetical protein 2513607..2514044 Acidiphilium cryptum JF-5 5161838 YP_001235399.1 CDS Acry_2285 NC_009484.1 2514351 2515106 R PFAM: HpcH/HpaI aldolase; HpcH/HpaI aldolase complement(2514351..2515106) Acidiphilium cryptum JF-5 5160058 YP_001235400.1 CDS Acry_2286 NC_009484.1 2515183 2515863 D TIGRFAM: pyrrolidone-carboxylate peptidase; PFAM: peptidase C15, pyroglutamyl peptidase I; pyrrolidone-carboxylate peptidase 2515183..2515863 Acidiphilium cryptum JF-5 5159869 YP_001235401.1 CDS Acry_2287 NC_009484.1 2516160 2516996 R PFAM: alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(2516160..2516996) Acidiphilium cryptum JF-5 5159870 YP_001235402.1 CDS Acry_2288 NC_009484.1 2517021 2518955 R TIGRFAM: acetate--CoA ligase; PFAM: AMP-dependent synthetase and ligase; acetate--CoA ligase complement(2517021..2518955) Acidiphilium cryptum JF-5 5159508 YP_001235403.1 CDS Acry_2289 NC_009484.1 2519040 2521313 R NADP-dependent; catalyzes the oxidative decarboxylation of malate to form pyruvate; decarboxylates oxaloacetate; malic enzyme complement(2519040..2521313) Acidiphilium cryptum JF-5 5159788 YP_001235404.1 CDS lipB NC_009484.1 2521571 2522257 D lipoyl/octanoyltransferase; catalyzes the transfer of the lipoyl/octanoyl moiety of lipoyl/octanoyl-ACP onto lipoate-dependent enzymes like pyruvate dehydrogenase and the glycine cleavage system H protein; lipoate-protein ligase B 2521571..2522257 Acidiphilium cryptum JF-5 5162040 YP_001235405.1 CDS Acry_2291 NC_009484.1 2522262 2523728 R PFAM: polysaccharide biosynthesis protein; polysaccharide biosynthesis protein complement(2522262..2523728) Acidiphilium cryptum JF-5 5160084 YP_001235406.1 CDS Acry_2292 NC_009484.1 2524519 2524788 R hypothetical protein complement(2524519..2524788) Acidiphilium cryptum JF-5 5161902 YP_001235407.1 CDS Acry_2293 NC_009484.1 2525298 2525558 D hypothetical protein 2525298..2525558 Acidiphilium cryptum JF-5 5160106 YP_001235408.1 CDS Acry_2294 NC_009484.1 2525578 2525901 R hypothetical protein complement(2525578..2525901) Acidiphilium cryptum JF-5 5160178 YP_001235409.1 CDS Acry_2295 NC_009484.1 2526379 2526639 R hypothetical protein complement(2526379..2526639) Acidiphilium cryptum JF-5 5160224 YP_001235410.1 CDS Acry_2296 NC_009484.1 2526743 2528584 R hypothetical protein complement(2526743..2528584) Acidiphilium cryptum JF-5 5160225 YP_001235411.1 CDS Acry_2297 NC_009484.1 2528675 2528980 R hypothetical protein complement(2528675..2528980) Acidiphilium cryptum JF-5 5160097 YP_001235412.1 CDS Acry_2298 NC_009484.1 2528977 2529624 R hypothetical protein complement(2528977..2529624) Acidiphilium cryptum JF-5 5159732 YP_001235413.1 CDS Acry_2299 NC_009484.1 2529636 2529881 R hypothetical protein complement(2529636..2529881) Acidiphilium cryptum JF-5 5159733 YP_001235414.1 CDS Acry_2300 NC_009484.1 2530195 2530668 R hypothetical protein complement(2530195..2530668) Acidiphilium cryptum JF-5 5159698 YP_001235415.1 CDS Acry_2301 NC_009484.1 2530665 2532038 R hypothetical protein complement(2530665..2532038) Acidiphilium cryptum JF-5 5159608 YP_001235416.1 CDS Acry_2302 NC_009484.1 2532686 2533432 R PFAM: IstB domain protein ATP-binding protein; IstB ATP binding N-terminal domain protein; SMART: AAA ATPase; IstB ATP binding domain-containing protein complement(2532686..2533432) Acidiphilium cryptum JF-5 5159609 YP_001235417.1 CDS Acry_2303 NC_009484.1 2533450 2534997 R PFAM: Integrase, catalytic region; integrase catalytic subunit complement(2533450..2534997) Acidiphilium cryptum JF-5 5159456 YP_001235418.1 CDS Acry_2304 NC_009484.1 2535115 2535591 R hypothetical protein complement(2535115..2535591) Acidiphilium cryptum JF-5 5159938 YP_001235419.1 CDS Acry_2305 NC_009484.1 2535591 2536025 R hypothetical protein complement(2535591..2536025) Acidiphilium cryptum JF-5 5159939 YP_001235420.1 CDS Acry_2306 NC_009484.1 2536284 2536931 R hypothetical protein complement(2536284..2536931) Acidiphilium cryptum JF-5 5159501 YP_001235421.1 CDS Acry_2307 NC_009484.1 2537128 2537379 R hypothetical protein complement(2537128..2537379) Acidiphilium cryptum JF-5 5159499 YP_001235422.1 CDS Acry_2308 NC_009484.1 2537376 2537780 R hypothetical protein complement(2537376..2537780) Acidiphilium cryptum JF-5 5159500 YP_001235423.1 CDS Acry_2309 NC_009484.1 2538067 2539299 R PFAM: phage integrase family protein; phage integrase family protein complement(2538067..2539299) Acidiphilium cryptum JF-5 5159551 YP_001235424.1 CDS Acry_2310 NC_009484.1 2539799 2540605 D hypothetical protein 2539799..2540605 Acidiphilium cryptum JF-5 5159885 YP_001235425.1 CDS Acry_2311 NC_009484.1 2540505 2541326 R transposase complement(2540505..2541326) Acidiphilium cryptum JF-5 5159886 YP_001235426.1 CDS Acry_2313 NC_009484.1 2541879 2542673 R PFAM: Myo-inositol catabolism IolB domain protein; myo-inositol catabolism IolB domain-containing protein complement(2541879..2542673) Acidiphilium cryptum JF-5 5161943 YP_001235427.1 CDS Acry_2314 NC_009484.1 2542705 2544543 R PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; thiamine pyrophosphate enzyme, central region complement(2542705..2544543) Acidiphilium cryptum JF-5 5159762 YP_001235428.1 CDS Acry_2315 NC_009484.1 2544540 2546450 R PFAM: PfkB domain protein; ribokinase-like domain-containing protein complement(2544540..2546450) Acidiphilium cryptum JF-5 5159763 YP_001235429.1 CDS Acry_2316 NC_009484.1 2546519 2547322 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2546519..2547322) Acidiphilium cryptum JF-5 5159562 YP_001235430.1 CDS Acry_2317 NC_009484.1 2547324 2548391 R PFAM: inner-membrane translocator; inner-membrane translocator complement(2547324..2548391) Acidiphilium cryptum JF-5 5159690 YP_001235431.1 CDS Acry_2318 NC_009484.1 2548472 2549434 R ABC-type sugar transport system periplasmic component-like protein complement(2548472..2549434) Acidiphilium cryptum JF-5 5159691 YP_001235432.1 CDS Acry_2319 NC_009484.1 2549599 2550387 R PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein complement(2549599..2550387) Acidiphilium cryptum JF-5 5160577 YP_001235433.1 CDS Acry_2320 NC_009484.1 2550396 2551406 R PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; inositol 2-dehydrogenase complement(2550396..2551406) Acidiphilium cryptum JF-5 5159860 YP_001235434.1 CDS Acry_2321 NC_009484.1 2551408 2552370 R PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein complement(2551408..2552370) Acidiphilium cryptum JF-5 5159861 YP_001235435.1 CDS Acry_2322 NC_009484.1 2552446 2553519 D PFAM: regulatory protein, LacI; regulatory protein, LacI 2552446..2553519 Acidiphilium cryptum JF-5 5159702 YP_001235436.1 CDS Acry_2323 NC_009484.1 2553835 2553984 D hypothetical protein 2553835..2553984 Acidiphilium cryptum JF-5 5159486 YP_001235437.1 CDS Acry_2324 NC_009484.1 2554047 2554859 R PFAM: short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase complement(2554047..2554859) Acidiphilium cryptum JF-5 5159487 YP_001235438.1 CDS Acry_2325 NC_009484.1 2554856 2555767 R PFAM: Xylose isomerase domain protein TIM barrel; xylose isomerase domain-containing protein complement(2554856..2555767) Acidiphilium cryptum JF-5 5159504 YP_001235439.1 CDS Acry_2326 NC_009484.1 2555881 2556825 R PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); RpiR family transcriptional regulator complement(2555881..2556825) Acidiphilium cryptum JF-5 5160600 YP_001235440.1 CDS Acry_2327 NC_009484.1 2557149 2557940 D PFAM: HpcH/HpaI aldolase; HpcH/HpaI aldolase 2557149..2557940 Acidiphilium cryptum JF-5 5160601 YP_001235441.1 CDS Acry_2328 NC_009484.1 2557942 2558928 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 2557942..2558928 Acidiphilium cryptum JF-5 5159735 YP_001235442.1 CDS Acry_2329 NC_009484.1 2558999 2559991 D PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; inositol 2-dehydrogenase 2558999..2559991 Acidiphilium cryptum JF-5 5160071 YP_001235443.1 CDS Acry_2330 NC_009484.1 2559996 2561117 D PFAM: oxidoreductase domain protein; Oxidoreductase, C-terminal domain; oxidoreductase domain-containing protein 2559996..2561117 Acidiphilium cryptum JF-5 5160072 YP_001235444.1 CDS Acry_2331 NC_009484.1 2561181 2561345 R hypothetical protein complement(2561181..2561345) Acidiphilium cryptum JF-5 5159764 YP_001235445.1 CDS Acry_2332 NC_009484.1 2561466 2563892 R hypothetical protein complement(2561466..2563892) Acidiphilium cryptum JF-5 5160149 YP_001235446.1 CDS Acry_2333 NC_009484.1 2563912 2565471 R PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH dehydrogenase (quinone) complement(2563912..2565471) Acidiphilium cryptum JF-5 5160150 YP_001235447.1 CDS Acry_2334 NC_009484.1 2565579 2566454 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2565579..2566454 Acidiphilium cryptum JF-5 5160129 YP_001235448.1 CDS Acry_2335 NC_009484.1 2566986 2567243 D hypothetical protein 2566986..2567243 Acidiphilium cryptum JF-5 5159670 YP_001235449.1 CDS Acry_2336 NC_009484.1 2567305 2567925 D Member of the extracytoplasmic function sigma factors which are active under specific conditions; binds with the catalytic core of RNA polymerase to produce the holoenzyme and directs bacterial core RNA polymerase to specific promoter elements to initiate transcription; RNA polymerase sigma factor 2567305..2567925 Acidiphilium cryptum JF-5 5159671 YP_001235450.1 CDS Acry_2337 NC_009484.1 2567922 2568350 D hypothetical protein 2567922..2568350 Acidiphilium cryptum JF-5 5159479 YP_001235451.1 CDS Acry_2338 NC_009484.1 2568347 2568886 D integral membrane protein-like protein 2568347..2568886 Acidiphilium cryptum JF-5 5159749 YP_001235452.1 CDS Acry_2339 NC_009484.1 2569303 2570871 D hypothetical protein 2569303..2570871 Acidiphilium cryptum JF-5 5159750 YP_001235453.1 CDS Acry_2340 NC_009484.1 2570877 2572094 D PFAM: protein of unknown function DUF1501; hypothetical protein 2570877..2572094 Acidiphilium cryptum JF-5 5160335 YP_001235454.1 CDS Acry_2341 NC_009484.1 2572154 2572798 D PFAM: DNA photolyase domain protein; DNA photolyase domain-containing protein 2572154..2572798 Acidiphilium cryptum JF-5 5159619 YP_001235455.1 CDS Acry_2342 NC_009484.1 2572946 2574199 D PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein 2572946..2574199 Acidiphilium cryptum JF-5 5159620 YP_001235456.1 CDS Acry_2343 NC_009484.1 2574218 2575387 D PFAM: DNA photolyase, FAD-binding; deoxyribodipyrimidine photo-lyase 2574218..2575387 Acidiphilium cryptum JF-5 5160648 YP_001235457.1 CDS Acry_2344 NC_009484.1 2575415 2575840 D hypothetical protein 2575415..2575840 Acidiphilium cryptum JF-5 5159660 YP_001235458.1 CDS Acry_2345 NC_009484.1 2575833 2577008 D hypothetical protein 2575833..2577008 Acidiphilium cryptum JF-5 5159661 YP_001235459.1 CDS Acry_2346 NC_009484.1 2577008 2578132 D hypothetical protein 2577008..2578132 Acidiphilium cryptum JF-5 5160274 YP_001235460.1 CDS Acry_2347 NC_009484.1 2578333 2578656 D hypothetical protein 2578333..2578656 Acidiphilium cryptum JF-5 5160340 YP_001235461.1 CDS Acry_2348 NC_009484.1 2578862 2579767 D PFAM: phage integrase family protein; phage integrase domain protein SAM domain protein; phage integrase family protein 2578862..2579767 Acidiphilium cryptum JF-5 5160341 YP_001235462.1 CDS Acry_2349 NC_009484.1 2579772 2580965 D PFAM: putative transposase; putative transposase 2579772..2580965 Acidiphilium cryptum JF-5 5160087 YP_001235463.1 CDS Acry_2350 NC_009484.1 2581573 2582007 R PFAM: globin; globin complement(2581573..2582007) Acidiphilium cryptum JF-5 5160314 YP_001235464.1 CDS Acry_2351 NC_009484.1 2582028 2583062 R hypothetical protein complement(2582028..2583062) Acidiphilium cryptum JF-5 5160315 YP_001235465.1 CDS Acry_2352 NC_009484.1 2583946 2585640 D PFAM: Resolvase, N-terminal domain; Recombinase; resolvase domain-containing protein 2583946..2585640 Acidiphilium cryptum JF-5 5160266 YP_001235466.1 CDS Acry_2353 NC_009484.1 2591485 2592441 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase complement(2591485..2592441) Acidiphilium cryptum JF-5 5162163 YP_001235467.1 CDS Acry_2354 NC_009484.1 2592450 2593049 R TIGRFAM: phosphoheptose isomerase; phosphoheptose isomerase complement(2592450..2593049) Acidiphilium cryptum JF-5 5160393 YP_001235468.1 CDS Acry_2355 NC_009484.1 2593039 2593905 R TIGRFAM: 3-hydroxybutyrate dehydrogenase; PFAM: short-chain dehydrogenase/reductase SDR; KR; 3-hydroxybutyrate dehydrogenase complement(2593039..2593905) Acidiphilium cryptum JF-5 5160474 YP_001235469.1 CDS Acry_2356 NC_009484.1 2594160 2594444 D hypothetical protein 2594160..2594444 Acidiphilium cryptum JF-5 5159752 YP_001235470.1 CDS Acry_2357 NC_009484.1 2594673 2595263 R PFAM: SOUL heme-binding protein; SOUL heme-binding protein complement(2594673..2595263) Acidiphilium cryptum JF-5 5159753 YP_001235471.1 CDS Acry_2358 NC_009484.1 2595950 2596657 D PFAM: transposase, IS4 family protein; transposase, IS4 family protein 2595950..2596657 Acidiphilium cryptum JF-5 5160658 YP_001235472.1 CDS Acry_2359 NC_009484.1 2596666 2597304 R hypothetical protein complement(2596666..2597304) Acidiphilium cryptum JF-5 5160140 YP_001235473.1 CDS Acry_2360 NC_009484.1 2597423 2597893 R PFAM: ferric-uptake regulator; ferric uptake regulator family protein complement(2597423..2597893) Acidiphilium cryptum JF-5 5160141 YP_001235474.1 CDS Acry_2361 NC_009484.1 2598015 2599667 D PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 2598015..2599667 Acidiphilium cryptum JF-5 5159917 YP_001235475.1 CDS Acry_2362 NC_009484.1 2599785 2600963 D PFAM: major facilitator superfamily MFS_1; major facilitator transporter 2599785..2600963 Acidiphilium cryptum JF-5 5160260 YP_001235476.1 CDS Acry_2363 NC_009484.1 2600973 2601962 R PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase complement(2600973..2601962) Acidiphilium cryptum JF-5 5160261 YP_001235477.1 CDS aspS NC_009484.1 2602044 2603831 R catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA; contains discriminating and non-discriminating subtypes; aspartyl-tRNA synthetase complement(2602044..2603831) Acidiphilium cryptum JF-5 5160465 YP_001235478.1 CDS Acry_2365 NC_009484.1 2603916 2605094 D TIGRFAM: ribonuclease D; PFAM: HRDC domain protein; 3'-5' exonuclease; ribonuclease D 2603916..2605094 Acidiphilium cryptum JF-5 5160659 YP_001235479.1 CDS Acry_2366 NC_009484.1 2605095 2605868 R PFAM: ABC-3 protein; ABC-3 protein complement(2605095..2605868) Acidiphilium cryptum JF-5 5160660 YP_001235480.1 CDS Acry_2367 NC_009484.1 2605870 2606709 R PFAM: ABC-3 protein; ABC-3 protein complement(2605870..2606709) Acidiphilium cryptum JF-5 5160387 YP_001235481.1 CDS Acry_2368 NC_009484.1 2606719 2607534 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2606719..2607534) Acidiphilium cryptum JF-5 5160399 YP_001235482.1 CDS Acry_2369 NC_009484.1 2607531 2608451 R PFAM: periplasmic solute binding protein; periplasmic solute binding protein complement(2607531..2608451) Acidiphilium cryptum JF-5 5160400 YP_001235483.1 CDS Acry_2370 NC_009484.1 2608579 2608809 D PFAM: 4-oxalocrotonate tautomerase; 4-oxalocrotonate tautomerase 2608579..2608809 Acidiphilium cryptum JF-5 5160510 YP_001235484.1 CDS Acry_2371 NC_009484.1 2608806 2609342 D hypothetical protein 2608806..2609342 Acidiphilium cryptum JF-5 5160470 YP_001235485.1 CDS Acry_2372 NC_009484.1 2609311 2610585 R PFAM: MOFRL domain protein; hydroxypyruvate reductase complement(2609311..2610585) Acidiphilium cryptum JF-5 5160471 YP_001235486.1 CDS Acry_2373 NC_009484.1 2610693 2611526 R hypothetical protein complement(2610693..2611526) Acidiphilium cryptum JF-5 5159604 YP_001235487.1 CDS Acry_2374 NC_009484.1 2611598 2611954 R hypothetical protein complement(2611598..2611954) Acidiphilium cryptum JF-5 5160281 YP_001235488.1 CDS Acry_2375 NC_009484.1 2612030 2613019 R PFAM: tRNA synthetase, class II (D, K and N); lysine--tRNA ligase complement(2612030..2613019) Acidiphilium cryptum JF-5 5160282 YP_001235489.1 CDS Acry_2376 NC_009484.1 2613043 2614020 D TIGRFAM: lysine 2,3-aminomutase YodO family protein; PFAM: Radical SAM domain protein; lysine 2,3-aminomutase YodO family protein 2613043..2614020 Acidiphilium cryptum JF-5 5160378 YP_001235490.1 CDS Acry_2377 NC_009484.1 2614033 2614482 D catalyzes the formation of 3-dehydroshikimate from 3-dehydroquinate in chorismate biosynthesis; 3-dehydroquinate dehydratase 2614033..2614482 Acidiphilium cryptum JF-5 5162295 YP_001235491.1 CDS Acry_2378 NC_009484.1 2614479 2614961 D TIGRFAM: acetyl-CoA carboxylase, biotin carboxyl carrier protein; PFAM: biotin/lipoyl attachment domain-containing protein; acetyl-CoA carboxylase, biotin carboxyl carrier protein 2614479..2614961 Acidiphilium cryptum JF-5 5162296 YP_001235492.1 CDS Acry_2379 NC_009484.1 2614969 2616315 D an AccC homodimer forms the biotin carboxylase subunit of the acetyl CoA carboxylase, an enzyme that catalyzes the formation of malonyl-CoA, which in turn controls the rate of fatty acid metabolism; acetyl-CoA carboxylase biotin carboxylase subunit 2614969..2616315 Acidiphilium cryptum JF-5 5160416 YP_001235493.1 CDS Acry_2380 NC_009484.1 2616327 2617127 R hypothetical protein complement(2616327..2617127) Acidiphilium cryptum JF-5 5160578 YP_001235494.1 CDS Acry_2381 NC_009484.1 2617229 2619601 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 2617229..2619601 Acidiphilium cryptum JF-5 5160579 YP_001235495.1 CDS Acry_2382 NC_009484.1 2619699 2621990 D TIGRFAM: oxidoreductase alpha (molybdopterin) subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; oxidoreductase alpha (molybdopterin) subunit 2619699..2621990 Acidiphilium cryptum JF-5 5160695 YP_001235496.1 CDS Acry_2383 NC_009484.1 2622107 2622832 R PFAM: major intrinsic protein; major intrinsic protein complement(2622107..2622832) Acidiphilium cryptum JF-5 5160766 YP_001235497.1 CDS Acry_2384 NC_009484.1 2622868 2624367 R TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase, FGGY; glycerol kinase complement(2622868..2624367) Acidiphilium cryptum JF-5 5160767 YP_001235498.1 CDS glpD NC_009484.1 2624498 2626039 R in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase complement(2624498..2626039) Acidiphilium cryptum JF-5 5160741 YP_001235499.1 CDS Acry_2386 NC_009484.1 2626157 2626963 R PFAM: regulatory protein, DeoR; Helix-turn-helix, type 11 domain protein; DeoR family transcriptional regulator complement(2626157..2626963) Acidiphilium cryptum JF-5 5160539 YP_001235500.1 CDS Acry_2387 NC_009484.1 2627258 2628775 D PFAM: chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2627258..2628775 Acidiphilium cryptum JF-5 5160540 YP_001235501.1 CDS Acry_2388 NC_009484.1 2628904 2629779 D PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein 2628904..2629779 Acidiphilium cryptum JF-5 5160326 YP_001235502.1 CDS Acry_2389 NC_009484.1 2629807 2631270 D PFAM: aldehyde dehydrogenase; aldehyde dehydrogenase 2629807..2631270 Acidiphilium cryptum JF-5 5159662 YP_001235503.1 CDS Acry_2390 NC_009484.1 2631294 2632754 R catalyzes the formation of 4-aminobutanoate from 4-aminobutanal; involved in putrescine degradation; gamma-aminobutyraldehyde dehydrogenase complement(2631294..2632754) Acidiphilium cryptum JF-5 5159663 YP_001235504.1 CDS Acry_2391 NC_009484.1 2632735 2634285 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(2632735..2634285) Acidiphilium cryptum JF-5 5160566 YP_001235505.1 CDS Acry_2392 NC_009484.1 2634307 2635452 R PFAM: helix-turn-helix- domain containing protein, AraC type; helix-turn-helix domain-containing protein complement(2634307..2635452) Acidiphilium cryptum JF-5 5160700 YP_001235506.1 CDS Acry_2393 NC_009484.1 2635501 2636982 D PFAM: glutamine synthetase, catalytic region; glutamine synthetase 2635501..2636982 Acidiphilium cryptum JF-5 5160701 YP_001235507.1 CDS Acry_2394 NC_009484.1 2636989 2638158 D PFAM: iron-containing alcohol dehydrogenase; iron-containing alcohol dehydrogenase 2636989..2638158 Acidiphilium cryptum JF-5 5160576 YP_001235508.1 CDS Acry_2395 NC_009484.1 2638307 2639386 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; diguanylate cyclase 2638307..2639386 Acidiphilium cryptum JF-5 5160494 YP_001235509.1 CDS dnaE NC_009484.1 2639419 2642838 D catalyzes DNA-template-directed extension of the 3'- end of a DNA strand by one nucleotide at a time; main replicative polymerase; DNA polymerase III subunit alpha 2639419..2642838 Acidiphilium cryptum JF-5 5160495 YP_001235510.1 CDS Acry_2397 NC_009484.1 2642922 2644091 D Catalyzes the synthesis of acetoacetyl coenzyme A from two molecules of acetyl coenzyme A. It can also act as a thiolase, catalyzing the reverse reaction and generating two-carbon units from the four-carbon product of fatty acid oxidation; acetyl-CoA acetyltransferase 2642922..2644091 Acidiphilium cryptum JF-5 5160794 YP_001235511.1 CDS Acry_2398 NC_009484.1 2644156 2644905 R PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR complement(2644156..2644905) Acidiphilium cryptum JF-5 5160863 YP_001235512.1 CDS Acry_2399 NC_009484.1 2645032 2646021 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; Male sterility C-terminal domain; NAD-dependent epimerase/dehydratase complement(2645032..2646021) Acidiphilium cryptum JF-5 5160864 YP_001235513.1 CDS Acry_2400 NC_009484.1 2646190 2646585 R PFAM: Cupin 2, conserved barrel domain protein; cupin complement(2646190..2646585) Acidiphilium cryptum JF-5 5160899 YP_001235514.1 CDS Acry_2401 NC_009484.1 2646653 2647279 R PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase complement(2646653..2647279) Acidiphilium cryptum JF-5 5160891 YP_001235515.1 CDS Acry_2402 NC_009484.1 2647433 2648911 D PFAM: Amidase; amidase 2647433..2648911 Acidiphilium cryptum JF-5 5160892 YP_001235516.1 CDS Acry_2403 NC_009484.1 2648931 2649809 R TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; parB-like partition protein complement(2648931..2649809) Acidiphilium cryptum JF-5 5160523 YP_001235517.1 CDS Acry_2404 NC_009484.1 2649806 2650597 R PFAM: Cobyrinic acid a,c-diamide synthase; cobyrinic acid a,c-diamide synthase complement(2649806..2650597) Acidiphilium cryptum JF-5 5160687 YP_001235518.1 CDS Acry_2405 NC_009484.1 2650587 2651240 R TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; methyltransferase GidB complement(2650587..2651240) Acidiphilium cryptum JF-5 5160688 YP_001235519.1 CDS Acry_2406 NC_009484.1 2651237 2652967 R GidA; glucose-inhibited cell division protein A; involved in the 5-carboxymethylaminomethyl modification (mnm(5)s(2)U) of the wobble uridine base in some tRNAs; tRNA uridine 5-carboxymethylaminomethyl modification protein GidA complement(2651237..2652967) Acidiphilium cryptum JF-5 5159927 YP_001235520.1 CDS Acry_2407 NC_009484.1 2653003 2654304 R TIGRFAM: tRNA modification GTPase TrmE; small GTP-binding protein; PFAM: GTP-binding protein, HSR1-related; tRNA modification GTPase TrmE complement(2653003..2654304) Acidiphilium cryptum JF-5 5160560 YP_001235521.1 CDS Acry_2408 NC_009484.1 2654301 2654489 R ferredoxin-like protein complement(2654301..2654489) Acidiphilium cryptum JF-5 5160561 YP_001235522.1 CDS Acry_2409 NC_009484.1 2654574 2656805 D PFAM: protein of unknown function DUF255; hypothetical protein 2654574..2656805 Acidiphilium cryptum JF-5 5162323 YP_001235523.1 CDS Acry_2410 NC_009484.1 2656848 2657930 D chromosome partitioning ATPase 2656848..2657930 Acidiphilium cryptum JF-5 5162342 YP_001235524.1 CDS Acry_2411 NC_009484.1 2657935 2658402 D binds to single-strand binding (SSB) protein and acts as a bridge between the DnaX clamp loader complex and the SSB; DNA polymerase III subunit chi 2657935..2658402 Acidiphilium cryptum JF-5 5162343 YP_001235525.1 CDS Acry_2412 NC_009484.1 2658451 2660040 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; hypothetical protein 2658451..2660040 Acidiphilium cryptum JF-5 5160304 YP_001235526.1 CDS Acry_2413 NC_009484.1 2660048 2661220 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; HI0933 family protein; FAD dependent oxidoreductase; FAD-dependent pyridine nucleotide-disulphide oxidoreductase; hypothetical protein complement(2660048..2661220) Acidiphilium cryptum JF-5 5160809 YP_001235527.1 CDS Acry_2414 NC_009484.1 2661333 2662262 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 2661333..2662262 Acidiphilium cryptum JF-5 5160810 YP_001235528.1 CDS Acry_2415 NC_009484.1 2662311 2663399 D PFAM: glycosyl transferase, family 4; glycosyl transferase family protein 2662311..2663399 Acidiphilium cryptum JF-5 5160831 YP_001235529.1 CDS Acry_2416 NC_009484.1 2663412 2663771 R hypothetical protein complement(2663412..2663771) Acidiphilium cryptum JF-5 5160865 YP_001235530.1 CDS Acry_2417 NC_009484.1 2663761 2664801 R PFAM: glycosyl transferase, family 2; glycosyl transferase family protein complement(2663761..2664801) Acidiphilium cryptum JF-5 5160866 YP_001235531.1 CDS Acry_2418 NC_009484.1 2664838 2666331 R hypothetical protein complement(2664838..2666331) Acidiphilium cryptum JF-5 5160839 YP_001235532.1 CDS Acry_2419 NC_009484.1 2666526 2666846 R hypothetical protein complement(2666526..2666846) Acidiphilium cryptum JF-5 5160837 YP_001235533.1 CDS Acry_2420 NC_009484.1 2668119 2668934 R hypothetical protein complement(2668119..2668934) Acidiphilium cryptum JF-5 5160838 YP_001235534.1 CDS Acry_2421 NC_009484.1 2669235 2671769 R hypothetical protein complement(2669235..2671769) Acidiphilium cryptum JF-5 5160550 YP_001235535.1 CDS Acry_2422 NC_009484.1 2671762 2673357 R PFAM: Eco57I restriction endonuclease; site-specific DNA-methyltransferase (adenine-specific) complement(2671762..2673357) Acidiphilium cryptum JF-5 5160889 YP_001235536.1 CDS Acry_2423 NC_009484.1 2673354 2674010 R hypothetical protein complement(2673354..2674010) Acidiphilium cryptum JF-5 5160890 YP_001235537.1 CDS Acry_2424 NC_009484.1 2674385 2677156 R exonuclease V subunit alpha complement(2674385..2677156) Acidiphilium cryptum JF-5 5159827 YP_001235538.1 CDS Acry_2425 NC_009484.1 2677156 2679006 R Type IV secretory pathway VirD4 components-like protein complement(2677156..2679006) Acidiphilium cryptum JF-5 5160835 YP_001235539.1 CDS Acry_2427 NC_009484.1 2680131 2681060 R hypothetical protein complement(2680131..2681060) Acidiphilium cryptum JF-5 5162106 YP_001235540.1 CDS Acry_2428 NC_009484.1 2681060 2682256 R PFAM: phage integrase family protein; phage integrase family protein complement(2681060..2682256) Acidiphilium cryptum JF-5 5160937 YP_001235541.1 CDS Acry_2429 NC_009484.1 2682514 2683788 R PFAM: type III effector Hrp-dependent outers; type III effector Hrp-dependent outer protein complement(2682514..2683788) Acidiphilium cryptum JF-5 5162107 YP_001235542.1 CDS Acry_2430 NC_009484.1 2683785 2684558 R PFAM: Xylose isomerase domain protein TIM barrel; hydroxypyruvate isomerase complement(2683785..2684558) Acidiphilium cryptum JF-5 5160870 YP_001235543.1 CDS Acry_2431 NC_009484.1 2684586 2685497 R PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyacyl-CoA dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase complement(2684586..2685497) Acidiphilium cryptum JF-5 5160922 YP_001235544.1 CDS Acry_2432 NC_009484.1 2685543 2686640 R PFAM: regulatory protein, LacI; periplasmic binding protein/LacI transcriptional regulator; alanine racemase complement(2685543..2686640) Acidiphilium cryptum JF-5 5160459 YP_001235545.1 CDS Acry_2433 NC_009484.1 2686758 2687666 D PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; NAD-binding 6-phosphogluconate dehydrogenase 2686758..2687666 Acidiphilium cryptum JF-5 5160460 YP_001235546.1 CDS Acry_2434 NC_009484.1 2687663 2688298 D PFAM: class II aldolase/adducin family protein; putative aldolase 2687663..2688298 Acidiphilium cryptum JF-5 5160849 YP_001235547.1 CDS Acry_2435 NC_009484.1 2688314 2688892 R PFAM: Antibiotic biosynthesis monooxygenase; antibiotic biosynthesis monooxygenase complement(2688314..2688892) Acidiphilium cryptum JF-5 5160988 YP_001235548.1 CDS Acry_2436 NC_009484.1 2688897 2689487 R hypothetical protein complement(2688897..2689487) Acidiphilium cryptum JF-5 5160989 YP_001235549.1 CDS Acry_2437 NC_009484.1 2689677 2691161 D PFAM: major facilitator superfamily MFS_1; major facilitator transporter 2689677..2691161 Acidiphilium cryptum JF-5 5160997 YP_001235550.1 CDS Acry_2438 NC_009484.1 2691437 2694856 D Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates; indolepyruvate ferredoxin oxidoreductase 2691437..2694856 Acidiphilium cryptum JF-5 5161050 YP_001235551.1 CDS Acry_2439 NC_009484.1 2694857 2695921 R PFAM: putative ammonia monooxygenase; putative ammonia monooxygenase complement(2694857..2695921) Acidiphilium cryptum JF-5 5161051 YP_001235552.1 CDS Acry_2440 NC_009484.1 2696066 2696968 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(2696066..2696968) Acidiphilium cryptum JF-5 5161054 YP_001235553.1 CDS Acry_2441 NC_009484.1 2697018 2698055 R TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glucose-inhibited division protein A; thioredoxin reductase complement(2697018..2698055) Acidiphilium cryptum JF-5 5161018 YP_001235554.1 CDS Acry_2442 NC_009484.1 2698132 2698638 D PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 2698132..2698638 Acidiphilium cryptum JF-5 5161019 YP_001235555.1 CDS Acry_2443 NC_009484.1 2698747 2699610 D hypothetical protein 2698747..2699610 Acidiphilium cryptum JF-5 5161057 YP_001235556.1 CDS Acry_2444 NC_009484.1 2699706 2702063 D PFAM: surface antigen (D15); surface antigen variable number repeat protein; surface antigen (D15) 2699706..2702063 Acidiphilium cryptum JF-5 5160973 YP_001235557.1 CDS Acry_2445 NC_009484.1 2702068 2702847 D PFAM: outer membrane chaperone Skp (OmpH); outer membrane chaperone Skp 2702068..2702847 Acidiphilium cryptum JF-5 5160974 YP_001235558.1 CDS lpxD NC_009484.1 2702853 2703938 D adds the O-linked and N-linked 3(R)-hydroxy fatty acids to the glucosamine disaccharide during lipid A biosynthesis; UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase 2702853..2703938 Acidiphilium cryptum JF-5 5161120 YP_001235559.1 CDS Acry_2447 NC_009484.1 2703980 2704477 D TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase, FabA/FabZ; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 2703980..2704477 Acidiphilium cryptum JF-5 5161099 YP_001235560.1 CDS Acry_2448 NC_009484.1 2704474 2705280 D catalyzes the addition of (R)-3-hydroxytetradecanoyl to the glucosamine disaccharide in lipid A biosynthesis; UDP-N-acetylglucosamine acyltransferase 2704474..2705280 Acidiphilium cryptum JF-5 5161100 YP_001235561.1 CDS Acry_2449 NC_009484.1 2705305 2706168 D PFAM: protein of unknown function DUF1009; hypothetical protein 2705305..2706168 Acidiphilium cryptum JF-5 5161169 YP_001235562.1 CDS Acry_2450 NC_009484.1 2706165 2706557 D TIGRFAM: lactoylglutathione lyase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; lactoylglutathione lyase 2706165..2706557 Acidiphilium cryptum JF-5 5161209 YP_001235563.1 CDS Acry_2451 NC_009484.1 2706565 2707839 D hypothetical protein 2706565..2707839 Acidiphilium cryptum JF-5 5161210 YP_001235564.1 CDS Acry_2452 NC_009484.1 2707870 2708439 R hypothetical protein complement(2707870..2708439) Acidiphilium cryptum JF-5 5161233 YP_001235565.1 CDS Acry_2453 NC_009484.1 2708493 2708984 R hypothetical protein complement(2708493..2708984) Acidiphilium cryptum JF-5 5160532 YP_001235566.1 CDS Acry_2454 NC_009484.1 2709668 2710126 R hypothetical protein complement(2709668..2710126) Acidiphilium cryptum JF-5 5160533 YP_001235567.1 CDS Acry_2455 NC_009484.1 2710274 2710582 R hypothetical protein complement(2710274..2710582) Acidiphilium cryptum JF-5 5161236 YP_001235568.1 CDS Acry_2456 NC_009484.1 2710629 2711882 R PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; transposase, IS204/IS1001/IS1096/IS1165 family protein complement(2710629..2711882) Acidiphilium cryptum JF-5 5161095 YP_001235569.1 CDS Acry_2458 NC_009484.1 2712410 2713138 R hypothetical protein complement(2712410..2713138) Acidiphilium cryptum JF-5 5162002 YP_001235570.1 CDS Acry_2459 NC_009484.1 2713440 2713964 R ribosomal protein N-acetylase-like protein complement(2713440..2713964) Acidiphilium cryptum JF-5 5162336 YP_001235571.1 CDS Acry_2460 NC_009484.1 2714205 2715884 R ChvD; in Agrobacterium tumefaciens, mutations in both Walker boxes were found to affect virulence; putative ABC transporter ATP-binding protein complement(2714205..2715884) Acidiphilium cryptum JF-5 5160630 YP_001235572.1 CDS Acry_2461 NC_009484.1 2716074 2716685 R hypothetical protein complement(2716074..2716685) Acidiphilium cryptum JF-5 5160631 YP_001235573.1 CDS Acry_2462 NC_009484.1 2716841 2717812 R TIGRFAM: 2-dehydropantoate 2-reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; Ketopantoate reductase ApbA/PanE, N-terminal domain protein; Ketopantoate reductase ApbA/PanE, C-terminal domain protein; 2-dehydropantoate 2-reductase complement(2716841..2717812) Acidiphilium cryptum JF-5 5162356 YP_001235574.1 CDS Acry_2463 NC_009484.1 2717809 2719329 R PFAM: AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(2717809..2719329) Acidiphilium cryptum JF-5 5161198 YP_001235575.1 CDS Acry_2464 NC_009484.1 2719436 2720560 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(2719436..2720560) Acidiphilium cryptum JF-5 5161199 YP_001235576.1 CDS Acry_2465 NC_009484.1 2720577 2720783 R PFAM: Heavy metal transport/detoxification protein; heavy metal transport/detoxification protein complement(2720577..2720783) Acidiphilium cryptum JF-5 5161125 YP_001235577.1 CDS Acry_2466 NC_009484.1 2720940 2723177 D TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; copper-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; heavy metal translocating P-type ATPase 2720940..2723177 Acidiphilium cryptum JF-5 5161207 YP_001235578.1 CDS Acry_2467 NC_009484.1 2723185 2723928 R PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2723185..2723928) Acidiphilium cryptum JF-5 5161208 YP_001235579.1 CDS Acry_2468 NC_009484.1 2723941 2724867 R PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(2723941..2724867) Acidiphilium cryptum JF-5 5161248 YP_001235580.1 CDS Acry_2469 NC_009484.1 2724864 2725862 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase complement(2724864..2725862) Acidiphilium cryptum JF-5 5161178 YP_001235581.1 CDS Acry_2470 NC_009484.1 2725859 2727562 R catalyzes the formation of 3-methyl-2-oxobutanoate from 2,3,-dihydroxy-3-methylbutanoate; dihydroxy-acid dehydratase complement(2725859..2727562) Acidiphilium cryptum JF-5 5161179 YP_001235582.1 CDS Acry_2471 NC_009484.1 2727565 2728287 R PFAM: Dimethylmenaquinone methyltransferase; hypothetical protein complement(2727565..2728287) Acidiphilium cryptum JF-5 5161307 YP_001235583.1 CDS Acry_2472 NC_009484.1 2728689 2729138 R PFAM: conserved hypothetical protein 701; hypothetical protein complement(2728689..2729138) Acidiphilium cryptum JF-5 5161296 YP_001235584.1 CDS Acry_2473 NC_009484.1 2729135 2729827 R TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase complement(2729135..2729827) Acidiphilium cryptum JF-5 5161297 YP_001235585.1 CDS Acry_2474 NC_009484.1 2729824 2730912 R PFAM: ferrochelatase; ferrochelatase complement(2729824..2730912) Acidiphilium cryptum JF-5 5161272 YP_001235586.1 CDS hemE NC_009484.1 2730918 2731994 R catalyzes the formation of coproporphyrinogen from uroporphyrinogen III; uroporphyrinogen decarboxylase complement(2730918..2731994) Acidiphilium cryptum JF-5 5161335 YP_001235587.1 CDS Acry_2476 NC_009484.1 2732263 2733141 D PFAM: protein of unknown function DUF299; hypothetical protein 2732263..2733141 Acidiphilium cryptum JF-5 5161336 YP_001235588.1 CDS Acry_2477 NC_009484.1 2733248 2733739 D TIGRFAM: methylated-DNA--protein-cysteine methyltransferase; PFAM: methylated-DNA-[protein]-cysteine S-methyltransferase; methylated-DNA--protein-cysteine methyltransferase 2733248..2733739 Acidiphilium cryptum JF-5 5160580 YP_001235589.1 CDS Acry_2478 NC_009484.1 2733759 2734736 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 2733759..2734736 Acidiphilium cryptum JF-5 5160098 YP_001235590.1 CDS Acry_2479 NC_009484.1 2734897 2735184 D hypothetical protein 2734897..2735184 Acidiphilium cryptum JF-5 5160099 YP_001235591.1 CDS Acry_2480 NC_009484.1 2735328 2735774 D PFAM: CHRD domain containing protein; CHRD domain-containing protein 2735328..2735774 Acidiphilium cryptum JF-5 5161251 YP_001235592.1 CDS Acry_2481 NC_009484.1 2735845 2736276 D TIGRFAM: dihydroneopterin aldolase; dihydroneopterin aldolase 2735845..2736276 Acidiphilium cryptum JF-5 5161424 YP_001235593.1 CDS Acry_2482 NC_009484.1 2736283 2737539 R PFAM: natural resistance-associated macrophage protein; natural resistance-associated macrophage protein complement(2736283..2737539) Acidiphilium cryptum JF-5 5161425 YP_001235594.1 CDS Acry_2483 NC_009484.1 2737536 2738888 R TIGRFAM: 3-carboxy-cis,cis-muconate cycloisomerase; PFAM: fumarate lyase; 3-carboxy-cis,cis-muconate cycloisomerase complement(2737536..2738888) Acidiphilium cryptum JF-5 5161230 YP_001235595.1 CDS Acry_2484 NC_009484.1 2738971 2740365 D PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 2738971..2740365 Acidiphilium cryptum JF-5 5161429 YP_001235596.1 CDS Acry_2485 NC_009484.1 2741189 2741602 R PFAM: Sel1 domain protein repeat-containing protein; Sel1 domain-containing protein complement(2741189..2741602) Acidiphilium cryptum JF-5 5161430 YP_001235597.1 CDS Acry_2486 NC_009484.1 2741957 2742385 R hypothetical protein complement(2741957..2742385) Acidiphilium cryptum JF-5 5161368 YP_001235598.1 CDS Acry_2487 NC_009484.1 2742894 2743331 R hypothetical protein complement(2742894..2743331) Acidiphilium cryptum JF-5 5161469 YP_001235599.1 CDS Acry_2488 NC_009484.1 2743713 2744237 D catalyzes the hydrolysis of pyrophosphate to phosphate; inorganic pyrophosphatase 2743713..2744237 Acidiphilium cryptum JF-5 5162003 YP_001235600.1 CDS Acry_2489 NC_009484.1 2744287 2745147 R PFAM: NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase complement(2744287..2745147) Acidiphilium cryptum JF-5 5161431 YP_001235601.1 CDS Acry_2490 NC_009484.1 2745144 2745800 R hypothetical protein complement(2745144..2745800) Acidiphilium cryptum JF-5 5161461 YP_001235602.1 CDS Acry_2491 NC_009484.1 2745844 2746026 R hypothetical protein complement(2745844..2746026) Acidiphilium cryptum JF-5 5161462 YP_001235603.1 CDS Acry_2492 NC_009484.1 2746073 2746393 D PFAM: protein of unknown function DUF710; hypothetical protein 2746073..2746393 Acidiphilium cryptum JF-5 5161352 YP_001235604.1 CDS Acry_2493 NC_009484.1 2746586 2747143 D PFAM: 5-formyltetrahydrofolate cyclo-ligase; 5-formyltetrahydrofolate cyclo-ligase 2746586..2747143 Acidiphilium cryptum JF-5 5161455 YP_001235605.1 CDS Acry_2494 NC_009484.1 2747165 2748310 D PFAM: aminotransferase, class I and II; class I and II aminotransferase 2747165..2748310 Acidiphilium cryptum JF-5 5161456 YP_001235606.1 CDS Acry_2496 NC_009484.1 2749064 2750002 R TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54, G- domain; GTP-binding signal recognition particle SRP54, helical bundle; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(2749064..2750002) Acidiphilium cryptum JF-5 5161919 YP_001235607.1 CDS Acry_2497 NC_009484.1 2749999 2751234 R TIGRFAM: RNA modification enzyme, MiaB family; MiaB-like tRNA modifying enzyme; PFAM: Radical SAM domain protein; Protein of unknown function UPF0004-like; SMART: Elongator protein 3/MiaB/NifB; MiaB-like tRNA modifying protein complement(2749999..2751234) Acidiphilium cryptum JF-5 5161567 YP_001235608.1 CDS Acry_2498 NC_009484.1 2751231 2752064 R PFAM: diaminopimelate epimerase; diaminopimelate epimerase complement(2751231..2752064) Acidiphilium cryptum JF-5 5161568 YP_001235609.1 CDS Acry_2499 NC_009484.1 2752107 2753576 R PFAM: amino acid permease-associated region; amino acid permease-associated protein complement(2752107..2753576) Acidiphilium cryptum JF-5 5161402 YP_001235610.1 CDS Acry_2500 NC_009484.1 2753573 2754295 R TIGRFAM: endonuclease III; PFAM: helix-hairpin-helix motif; HhH-GPD family protein; endonuclease III complement(2753573..2754295) Acidiphilium cryptum JF-5 5161445 YP_001235611.1 CDS Acry_2501 NC_009484.1 2754348 2754893 D integral membrane protein-like protein 2754348..2754893 Acidiphilium cryptum JF-5 5161446 YP_001235612.1 CDS Acry_2502 NC_009484.1 2754966 2756114 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 2754966..2756114 Acidiphilium cryptum JF-5 5161677 YP_001235613.1 CDS groEL NC_009484.1 2756210 2757859 R 60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; many bacteria have multiple copies of the groEL gene which are active under different environmental conditions; the B.japonicum protein in this cluster is expressed constitutively; in Rhodobacter, Corynebacterium and Rhizobium this protein is essential for growth; chaperonin GroEL complement(2756210..2757859) Acidiphilium cryptum JF-5 5161495 YP_001235614.1 CDS groES NC_009484.1 2757904 2758218 R 10 kDa chaperonin; Cpn10; GroES; forms homoheptameric ring; binds to one or both ends of the GroEL double barrel in the presence of adenine nucleotides capping it; folding of unfolded substrates initiates in a GroEL-substrate bound and capped by GroES; release of the folded substrate is dependent on ATP binding and hydrolysis in the trans ring; co-chaperonin GroES complement(2757904..2758218) Acidiphilium cryptum JF-5 5161496 YP_001235615.1 CDS Acry_2505 NC_009484.1 2758436 2758762 D PFAM: Usg family protein; Usg family protein 2758436..2758762 Acidiphilium cryptum JF-5 5161582 YP_001235616.1 CDS Acry_2506 NC_009484.1 2758882 2759712 D hypothetical protein 2758882..2759712 Acidiphilium cryptum JF-5 5161558 YP_001235617.1 CDS Acry_2507 NC_009484.1 2759837 2761222 D TIGRFAM: phage uncharacterized protein; PFAM: protein of unknown function DUF264; phage protein 2759837..2761222 Acidiphilium cryptum JF-5 5161559 YP_001235618.1 CDS Acry_2508 NC_009484.1 2761227 2762639 D hypothetical protein 2761227..2762639 Acidiphilium cryptum JF-5 5161599 YP_001235619.1 CDS Acry_2509 NC_009484.1 2762636 2763061 D hypothetical protein 2762636..2763061 Acidiphilium cryptum JF-5 5161601 YP_001235620.1 CDS Acry_2510 NC_009484.1 2763161 2764483 D hypothetical protein 2763161..2764483 Acidiphilium cryptum JF-5 5161602 YP_001235621.1 CDS Acry_2511 NC_009484.1 2764497 2764805 D hypothetical protein 2764497..2764805 Acidiphilium cryptum JF-5 5162224 YP_001235622.1 CDS Acry_2512 NC_009484.1 2764807 2765214 D hypothetical protein 2764807..2765214 Acidiphilium cryptum JF-5 5162311 YP_001235623.1 CDS Acry_2513 NC_009484.1 2765222 2765866 D hypothetical protein 2765222..2765866 Acidiphilium cryptum JF-5 5162312 YP_001235624.1 CDS Acry_2514 NC_009484.1 2765866 2766711 D hypothetical protein 2765866..2766711 Acidiphilium cryptum JF-5 5161652 YP_001235625.1 CDS Acry_2515 NC_009484.1 2766863 2768419 D hypothetical protein 2766863..2768419 Acidiphilium cryptum JF-5 5161597 YP_001235626.1 CDS Acry_2516 NC_009484.1 2768428 2768856 D hypothetical protein 2768428..2768856 Acidiphilium cryptum JF-5 5161598 YP_001235627.1 CDS Acry_2517 NC_009484.1 2768853 2769158 D hypothetical protein 2768853..2769158 Acidiphilium cryptum JF-5 5161589 YP_001235628.1 CDS Acry_2518 NC_009484.1 2769445 2770095 D hypothetical protein 2769445..2770095 Acidiphilium cryptum JF-5 5161638 YP_001235629.1 CDS Acry_2519 NC_009484.1 2770112 2770798 D hypothetical protein 2770112..2770798 Acidiphilium cryptum JF-5 5161639 YP_001235630.1 CDS Acry_2520 NC_009484.1 2770795 2770989 D hypothetical protein 2770795..2770989 Acidiphilium cryptum JF-5 5159906 YP_001235631.1 CDS Acry_2521 NC_009484.1 2770961 2771962 D hypothetical protein 2770961..2771962 Acidiphilium cryptum JF-5 5160082 YP_001235632.1 CDS Acry_2522 NC_009484.1 2771959 2772507 D TIGRFAM: phage baseplate assembly protein V; phage baseplate assembly protein V 2771959..2772507 Acidiphilium cryptum JF-5 5160083 YP_001235633.1 CDS Acry_2523 NC_009484.1 2772507 2772875 D hypothetical protein 2772507..2772875 Acidiphilium cryptum JF-5 5161637 YP_001235634.1 CDS Acry_2524 NC_009484.1 2772894 2774018 D PFAM: Baseplate J family protein; baseplate J family protein 2772894..2774018 Acidiphilium cryptum JF-5 5161767 YP_001235635.1 CDS Acry_2525 NC_009484.1 2774022 2774696 D hypothetical protein 2774022..2774696 Acidiphilium cryptum JF-5 5161768 YP_001235636.1 CDS Acry_2526 NC_009484.1 2774789 2776042 D hypothetical protein 2774789..2776042 Acidiphilium cryptum JF-5 5161731 YP_001235637.1 CDS Acry_2527 NC_009484.1 2776558 2779101 D SMART: Parallel beta-helix repeat; parallel beta-helix repeat-containing protein 2776558..2779101 Acidiphilium cryptum JF-5 5161719 YP_001235638.1 CDS Acry_2528 NC_009484.1 2779129 2781021 D hypothetical protein 2779129..2781021 Acidiphilium cryptum JF-5 5161720 YP_001235639.1 CDS Acry_2529 NC_009484.1 2781024 2783162 D hypothetical protein 2781024..2783162 Acidiphilium cryptum JF-5 5161681 YP_001235640.1 CDS Acry_2530 NC_009484.1 2783168 2783521 D hypothetical protein 2783168..2783521 Acidiphilium cryptum JF-5 5161744 YP_001235641.1 CDS Acry_2531 NC_009484.1 2783538 2783777 D hypothetical protein 2783538..2783777 Acidiphilium cryptum JF-5 5161745 YP_001235642.1 CDS Acry_2532 NC_009484.1 2783765 2784160 D hypothetical protein 2783765..2784160 Acidiphilium cryptum JF-5 5160331 YP_001235643.1 CDS Acry_2533 NC_009484.1 2784157 2784462 D hypothetical protein 2784157..2784462 Acidiphilium cryptum JF-5 5162386 YP_001235644.1 CDS Acry_2534 NC_009484.1 2784432 2786615 R catalyzes the reversible transfer of the terminal phosphate of ATP to form a long chain polyphosphate; polyphosphate kinase complement(2784432..2786615) Acidiphilium cryptum JF-5 5162387 YP_001235645.1 CDS Acry_2535 NC_009484.1 2786646 2787389 R DNA replication initiation ATPase-like protein complement(2786646..2787389) Acidiphilium cryptum JF-5 5160155 YP_001235646.1 CDS Acry_2536 NC_009484.1 2787382 2788476 R PFAM: protein of unknown function UPF0118; hypothetical protein complement(2787382..2788476) Acidiphilium cryptum JF-5 5162319 YP_001235647.1 CDS Acry_2537 NC_009484.1 2788631 2789701 D TIGRFAM: phosphoribosylformylglycinamidine cyclo-ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine cyclo-ligase 2788631..2789701 Acidiphilium cryptum JF-5 5162320 YP_001235648.1 CDS purN NC_009484.1 2789698 2790318 D glycinamide ribonucleotide transformylase; GAR Tfase; catalyzes the synthesis of 5'-phosphoribosylformylglycinamide from 5'-phosphoribosylglycinamide and 10-formyltetrahydrofolate; PurN requires formyl folate for the reaction unlike PurT which uses formate; phosphoribosylglycinamide formyltransferase 2789698..2790318 Acidiphilium cryptum JF-5 5161706 YP_001235649.1 CDS Acry_2539 NC_009484.1 2790691 2791593 D PFAM: protein of unknown function DUF6, transmembrane; hypothetical protein 2790691..2791593 Acidiphilium cryptum JF-5 5161739 YP_001235650.1 CDS Acry_2540 NC_009484.1 2791600 2792541 R catalyzes the formation of L-citrulline from carbamoyl phosphate and L-ornithine in arginine biosynthesis and degradation; ornithine carbamoyltransferase complement(2791600..2792541) Acidiphilium cryptum JF-5 5161740 YP_001235651.1 CDS argD NC_009484.1 2792538 2793734 R DapATase; functions in arginine biosynthetic pathway; catalyzes the formation of N-acetyl-L-glutamate 5-semialdehyde from 2-oxoglutarate and N(2)-acetyl-L-ornithine; acetylornithine transaminase protein complement(2792538..2793734) Acidiphilium cryptum JF-5 5161724 YP_001235652.1 CDS Acry_2542 NC_009484.1 2793820 2795421 D PFAM: Ppx/GppA phosphatase; Ppx/GppA phosphatase 2793820..2795421 Acidiphilium cryptum JF-5 5161797 YP_001235653.1 CDS Acry_2543 NC_009484.1 2795422 2795802 R hypothetical protein complement(2795422..2795802) Acidiphilium cryptum JF-5 5161798 YP_001235654.1 CDS Acry_2544 NC_009484.1 2796174 2797169 D hypothetical protein 2796174..2797169 Acidiphilium cryptum JF-5 5161718 YP_001235655.1 CDS clpS NC_009484.1 2797244 2797600 D involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA; ATP-dependent Clp protease adaptor protein ClpS 2797244..2797600 Acidiphilium cryptum JF-5 5162388 YP_001235656.1 CDS Acry_2546 NC_009484.1 2797818 2800145 D TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit clpA; PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATP-dependent Clp protease ATP-binding protein ClpA 2797818..2800145 Acidiphilium cryptum JF-5 5162389 YP_001235657.1 CDS Acry_2547 NC_009484.1 2800209 2801987 R hypothetical protein complement(2800209..2801987) Acidiphilium cryptum JF-5 5162313 YP_001235658.1 CDS Acry_2548 NC_009484.1 2802037 2803347 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF224, cysteine-rich region domain protein; hypothetical protein complement(2802037..2803347) Acidiphilium cryptum JF-5 5161814 YP_001235659.1 CDS Acry_2549 NC_009484.1 2803388 2804566 R PFAM: FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(2803388..2804566) Acidiphilium cryptum JF-5 5161815 YP_001235660.1 CDS Acry_2550 NC_009484.1 2804563 2806023 R PFAM: FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(2804563..2806023) Acidiphilium cryptum JF-5 5161932 YP_001235661.1 CDS rpmJ NC_009484.1 2806191 2806316 R smallest protein in the large subunit; similar to what is found with protein L31 and L33 several bacterial genomes contain paralogs which may be regulated by zinc; the protein from Thermus thermophilus has a zinc-binding motif and contains a bound zinc ion; the proteins in this group do not have the motif; 50S ribosomal protein L36 complement(2806191..2806316) Acidiphilium cryptum JF-5 5162437 YP_001235662.1 CDS Acry_2552 NC_009484.1 2806899 2807804 D PFAM: aminotransferase, class IV; class IV aminotransferase 2806899..2807804 Acidiphilium cryptum JF-5 5162438 YP_001235663.1 CDS pyrH NC_009484.1 2807814 2808554 D Catalyzes the phosphorylation of UMP to UDP; uridylate kinase 2807814..2808554 Acidiphilium cryptum JF-5 5161751 YP_001235664.1 CDS frr NC_009484.1 2808564 2809130 D Rrf; Frr; ribosome-recycling factor; release factor 4; RF4; recycles ribosomes upon translation termination along with release factor RF-3 and elongation factor EF-G; A GTPase-dependent process results in release of 50S from 70S; inhibited by release factor RF-1; essential for viability; structurally similar to tRNAs; ribosome recycling factor 2808564..2809130 Acidiphilium cryptum JF-5 5161878 YP_001235665.1 CDS Acry_2555 NC_009484.1 2809139 2809903 D TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 2809139..2809903 Acidiphilium cryptum JF-5 5161879 YP_001235666.1 CDS Acry_2556 NC_009484.1 2809906 2810595 D PFAM: phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 2809906..2810595 Acidiphilium cryptum JF-5 5161836 YP_001235667.1 CDS Acry_2557 NC_009484.1 2810586 2811761 D catalyzes the NADP-dependent rearrangement and reduction of 1-deoxy-D-xylulose-5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 2810586..2811761 Acidiphilium cryptum JF-5 5161861 YP_001235668.1 CDS Acry_2558 NC_009484.1 2811832 2812893 D TIGRFAM: putative membrane-associated zinc metalloprotease; PFAM: PDZ/DHR/GLGF domain protein; peptidase M50; putative membrane-associated zinc metalloprotease 2811832..2812893 Acidiphilium cryptum JF-5 5161862 YP_001235669.1 CDS Acry_2559 NC_009484.1 2813067 2814086 D catalyzes the formation of (R)-2,3-dihydroxy-3-methylbutanoate from (S)-2-hydroxy-2-methyl-3-oxobutanoate in valine and isoleucine biosynthesis; ketol-acid reductoisomerase 2813067..2814086 Acidiphilium cryptum JF-5 5160054 YP_001235670.1 CDS Acry_2560 NC_009484.1 2814193 2815125 D TIGRFAM: cysteine synthase; cysteine synthase A; PFAM: Pyridoxal-5'-phosphate-dependent enzyme, beta subunit; cysteine synthase A 2814193..2815125 Acidiphilium cryptum JF-5 5161897 YP_001235671.1 CDS Acry_2561 NC_009484.1 2815122 2815751 D hypothetical protein 2815122..2815751 Acidiphilium cryptum JF-5 5161898 YP_001235672.1 CDS Acry_2562 NC_009484.1 2815751 2816779 D hypothetical protein 2815751..2816779 Acidiphilium cryptum JF-5 5161918 YP_001235673.1 CDS Acry_2563 NC_009484.1 2816787 2817629 R TIGRFAM: HAD-superfamily subfamily IIA hydrolase like protein; HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; HAD family hydrolase complement(2816787..2817629) Acidiphilium cryptum JF-5 5161850 YP_001235674.1 CDS Acry_2564 NC_009484.1 2817626 2818897 R PFAM: carbohydrate kinase, FGGY; carbohydrate kinase complement(2817626..2818897) Acidiphilium cryptum JF-5 5161851 YP_001235675.1 CDS Acry_2565 NC_009484.1 2819101 2820111 D PFAM: putative sugar-binding domain protein; DeoR family transcriptional regulator 2819101..2820111 Acidiphilium cryptum JF-5 5161721 YP_001235676.1 CDS Acry_2566 NC_009484.1 2820108 2821544 D PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein 2820108..2821544 Acidiphilium cryptum JF-5 5161871 YP_001235677.1 CDS Acry_2567 NC_009484.1 2821618 2822544 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein 2821618..2822544 Acidiphilium cryptum JF-5 5161872 YP_001235678.1 CDS Acry_2568 NC_009484.1 2822531 2823388 D PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 2822531..2823388 Acidiphilium cryptum JF-5 5161905 YP_001235679.1 CDS Acry_2569 NC_009484.1 2823385 2824473 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 2823385..2824473 Acidiphilium cryptum JF-5 5160100 YP_001235680.1 CDS Acry_2570 NC_009484.1 2824470 2825567 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein 2824470..2825567 Acidiphilium cryptum JF-5 5160101 YP_001235681.1 CDS Acry_2571 NC_009484.1 2825564 2827126 D PFAM: carbohydrate kinase, FGGY; carbohydrate kinase 2825564..2827126 Acidiphilium cryptum JF-5 5162434 YP_001235682.1 CDS Acry_2572 NC_009484.1 2827116 2828165 D PFAM: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic region; D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase 2827116..2828165 Acidiphilium cryptum JF-5 5162404 YP_001235683.1 CDS Acry_2573 NC_009484.1 2828205 2828873 D PFAM: class II aldolase/adducin family protein; L-fuculose phosphate aldolase 2828205..2828873 Acidiphilium cryptum JF-5 5162405 YP_001235684.1 CDS Acry_2574 NC_009484.1 2828870 2830357 D in Escherichia coli this homodimeric enzyme is expressed under aerobic conditions; anaerobic expression is repressed by the arcAB system; converts sn-glycerol-3-phosphate and ubiquinone-8 to dihydroxy acetone phosphate and ubiquinol-8; associates with the cytoplasmic membrane; glycerol-3-phosphate dehydrogenase 2828870..2830357 Acidiphilium cryptum JF-5 5162349 YP_001235685.1 CDS Acry_2575 NC_009484.1 2830354 2831346 D hypothetical protein 2830354..2831346 Acidiphilium cryptum JF-5 5162233 YP_001235686.1 CDS Acry_2576 NC_009484.1 2831355 2831960 R PFAM: protein of unknown function UPF0126; hypothetical protein complement(2831355..2831960) Acidiphilium cryptum JF-5 5162234 YP_001235687.1 CDS Acry_2577 NC_009484.1 2832058 2833341 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl-CoA dehydrogenase, type 2, C-terminal domain; acyl-CoA dehydrogenase domain-containing protein 2832058..2833341 Acidiphilium cryptum JF-5 5162105 YP_001235688.1 CDS Acry_2578 NC_009484.1 2833341 2834489 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 2833341..2834489 Acidiphilium cryptum JF-5 5161875 YP_001235689.1 CDS Acry_2579 NC_009484.1 2834486 2835343 D hypothetical protein 2834486..2835343 Acidiphilium cryptum JF-5 5161876 YP_001235690.1 CDS Acry_2580 NC_009484.1 2835718 2836587 D PFAM: MaoC domain protein dehydratase; 3-alpha,7-alpha, 12-alpha-trihydroxy-5-beta-cholest-24-enoyl-CoA hydratase 2835718..2836587 Acidiphilium cryptum JF-5 5162086 YP_001235691.1 CDS Acry_2581 NC_009484.1 2836815 2837735 D PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2836815..2837735 Acidiphilium cryptum JF-5 5162018 YP_001235692.1 CDS Acry_2582 NC_009484.1 2837805 2838125 R hypothetical protein complement(2837805..2838125) Acidiphilium cryptum JF-5 5162019 YP_001235693.1 CDS Acry_2583 NC_009484.1 2838103 2838756 R hypothetical protein complement(2838103..2838756) Acidiphilium cryptum JF-5 5161920 YP_001235694.1 CDS Acry_2584 NC_009484.1 2838796 2839551 R PFAM: peptidase C39, bacteriocin processing; peptidase C39, bacteriocin processing complement(2838796..2839551) Acidiphilium cryptum JF-5 5161951 YP_001235695.1 CDS Acry_2585 NC_009484.1 2839609 2840004 R hypothetical protein complement(2839609..2840004) Acidiphilium cryptum JF-5 5161952 YP_001235696.1 CDS Acry_2586 NC_009484.1 2840098 2840685 R hypothetical protein complement(2840098..2840685) Acidiphilium cryptum JF-5 5162232 YP_001235697.1 CDS Acry_2587 NC_009484.1 2840936 2842285 R hypothetical protein complement(2840936..2842285) Acidiphilium cryptum JF-5 5162480 YP_001235698.1 CDS Acry_2588 NC_009484.1 2842275 2843330 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; sigma-54 dependent trancsriptional regulator complement(2842275..2843330) Acidiphilium cryptum JF-5 5162481 YP_001235699.1 CDS Acry_2589 NC_009484.1 2843379 2843684 R hypothetical protein complement(2843379..2843684) Acidiphilium cryptum JF-5 5162204 YP_001235700.1 CDS Acry_2590 NC_009484.1 2843711 2845639 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; methyl-accepting chemotaxis sensory transducer 2843711..2845639 Acidiphilium cryptum JF-5 5162466 YP_001235701.1 CDS Acry_2591 NC_009484.1 2845679 2846626 R PFAM: SMP-30/Gluconolaconase/LRE domain protein; gluconolactonase complement(2845679..2846626) Acidiphilium cryptum JF-5 5162467 YP_001235702.1 CDS Acry_2592 NC_009484.1 2846623 2847573 R PFAM: inner-membrane translocator; monosaccharide-transporting ATPase complement(2846623..2847573) Acidiphilium cryptum JF-5 5162471 YP_001235703.1 CDS Acry_2593 NC_009484.1 2847570 2848568 R PFAM: inner-membrane translocator; inner-membrane translocator complement(2847570..2848568) Acidiphilium cryptum JF-5 5162123 YP_001235704.1 CDS Acry_2594 NC_009484.1 2848558 2850039 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2848558..2850039) Acidiphilium cryptum JF-5 5162124 YP_001235705.1 CDS Acry_2595 NC_009484.1 2850036 2851160 R sugar ABC transporter periplasmic protein complement(2850036..2851160) Acidiphilium cryptum JF-5 5162096 YP_001235706.1 CDS Acry_2596 NC_009484.1 2851245 2852159 R PFAM: SMP-30/Gluconolaconase/LRE domain protein; gluconolactonase complement(2851245..2852159) Acidiphilium cryptum JF-5 5162117 YP_001235707.1 CDS Acry_2597 NC_009484.1 2852262 2852882 R PFAM: KDPG and KHG aldolase; KDPG and KHG aldolase complement(2852262..2852882) Acidiphilium cryptum JF-5 5162118 YP_001235708.1 CDS Acry_2598 NC_009484.1 2852870 2853760 R PFAM: 2-keto-3-deoxy-galactonokinase; 2-keto-3-deoxy-galactonokinase complement(2852870..2853760) Acidiphilium cryptum JF-5 5162164 YP_001235709.1 CDS Acry_2599 NC_009484.1 2853788 2854561 R PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(2853788..2854561) Acidiphilium cryptum JF-5 5162158 YP_001235710.1 CDS Acry_2600 NC_009484.1 2854607 2855380 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2854607..2855380) Acidiphilium cryptum JF-5 5162159 YP_001235711.1 CDS Acry_2601 NC_009484.1 2855377 2856351 R PFAM: inner-membrane translocator; monosaccharide-transporting ATPase complement(2855377..2856351) Acidiphilium cryptum JF-5 5162160 YP_001235712.1 CDS Acry_2602 NC_009484.1 2856476 2857567 R ABC-type sugar transport system periplasmic component-like protein complement(2856476..2857567) Acidiphilium cryptum JF-5 5161946 YP_001235713.1 CDS Acry_2603 NC_009484.1 2857789 2858607 D PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2857789..2858607 Acidiphilium cryptum JF-5 5161947 YP_001235714.1 CDS Acry_2604 NC_009484.1 2858574 2859011 R hypothetical protein complement(2858574..2859011) Acidiphilium cryptum JF-5 5162037 YP_001235715.1 CDS Acry_2605 NC_009484.1 2859078 2860118 D PFAM: periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator 2859078..2860118 Acidiphilium cryptum JF-5 5162082 YP_001235716.1 CDS Acry_2606 NC_009484.1 2860210 2861292 D PFAM: inner-membrane translocator; monosaccharide-transporting ATPase 2860210..2861292 Acidiphilium cryptum JF-5 5162083 YP_001235717.1 CDS Acry_2607 NC_009484.1 2861289 2862071 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 2861289..2862071 Acidiphilium cryptum JF-5 5162054 YP_001235718.1 CDS paaA NC_009484.1 2862123 2863160 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; phenylacetate-CoA oxygenase subunit PaaA 2862123..2863160 Acidiphilium cryptum JF-5 5162000 YP_001235719.1 CDS paaB NC_009484.1 2863171 2863458 D with PaaBCDE catalyzes the hydroxylation of phenylacetyl-CoA; involved in phenylacetate degradation; phenylacetate-CoA oxygenase subunit PaaB 2863171..2863458 Acidiphilium cryptum JF-5 5162001 YP_001235720.1 CDS Acry_2610 NC_009484.1 2863455 2864264 D TIGRFAM: phenylacetate-CoA oxygenase, PaaI subunit; PFAM: phenylacetic acid catabolic family protein; phenylacetate-CoA oxygenase subunit PaaI 2863455..2864264 Acidiphilium cryptum JF-5 5162433 YP_001235721.1 CDS Acry_2611 NC_009484.1 2864261 2864752 D TIGRFAM: phenylacetate-CoA oxygenase, PaaJ subunit; PFAM: protein of unknown function DUF59; phenylacetate-CoA oxygenase subunit PaaJ 2864261..2864752 Acidiphilium cryptum JF-5 5160409 YP_001235722.1 CDS Acry_2612 NC_009484.1 2864743 2865831 D TIGRFAM: phenylacetate-CoA oxygenase/reductase, PaaK subunit; PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; phenylacetate-CoA oxygenase/reductase subunit PaaK 2864743..2865831 Acidiphilium cryptum JF-5 5160410 YP_001235723.1 CDS Acry_2613 NC_009484.1 2865839 2866279 R hypothetical protein complement(2865839..2866279) Acidiphilium cryptum JF-5 5160130 YP_001235724.1 CDS Acry_2614 NC_009484.1 2866276 2866911 R hypothetical protein complement(2866276..2866911) Acidiphilium cryptum JF-5 5161269 YP_001235725.1 CDS Acry_2615 NC_009484.1 2867043 2868332 D PFAM: C4-dicarboxylate transporter/malic acid transport protein; C4-dicarboxylate transporter/malic acid transport protein 2867043..2868332 Acidiphilium cryptum JF-5 5161270 YP_001235726.1 CDS Acry_2616 NC_009484.1 2868501 2869502 D with DhaL and DhaM forms dihydroxyacetone kinase, which is responsible for phosphorylating dihydroxyacetone; DhaK is the dihydroxyacetone binding subunit of the dihydroxyacetone kinase; dihydroxyacetone kinase subunit DhaK 2868501..2869502 Acidiphilium cryptum JF-5 5161328 YP_001235727.1 CDS Acry_2617 NC_009484.1 2869524 2870141 D TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; dihydroxyacetone kinase subunit DhaL 2869524..2870141 Acidiphilium cryptum JF-5 5162249 YP_001235728.1 CDS Acry_2618 NC_009484.1 2870163 2872409 D TIGRFAM: phosphocarrier, HPr family; dihydroxyacetone kinase, phosphotransfer subunit; PFAM: phosphocarrier HPr protein; PEP-utilizing enzyme; PTS system fructose subfamily IIA component; PEP-utilising enzyme, mobile region; PEP-utilising enzyme domain protein; dihydroxyacetone kinase, phosphotransfer subunit 2870163..2872409 Acidiphilium cryptum JF-5 5162250 YP_001235729.1 CDS Acry_2619 NC_009484.1 2872485 2873867 R hypothetical protein complement(2872485..2873867) Acidiphilium cryptum JF-5 5161355 YP_001235730.1 CDS Acry_2620 NC_009484.1 2874151 2875683 R TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; SMART: AAA ATPase; Mg chelatase subunit ChlI complement(2874151..2875683) Acidiphilium cryptum JF-5 5160814 YP_001235731.1 CDS Acry_2621 NC_009484.1 2875680 2876420 R PFAM: DNA repair protein RadC; DNA repair protein RadC complement(2875680..2876420) Acidiphilium cryptum JF-5 5160815 YP_001235732.1 CDS Acry_2622 NC_009484.1 2876667 2877017 D PFAM: Endoribonuclease L-PSP; endoribonuclease L-PSP 2876667..2877017 Acidiphilium cryptum JF-5 5160840 YP_001235733.1 CDS Acry_2623 NC_009484.1 2877351 2878238 D PFAM: CHAP domain containing protein; CHAP domain-containing protein 2877351..2878238 Acidiphilium cryptum JF-5 5160906 YP_001235734.1 CDS Acry_2624 NC_009484.1 2878251 2879069 R TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; dimethyladenosine transferase complement(2878251..2879069) Acidiphilium cryptum JF-5 5160907 YP_001235735.1 CDS Acry_2625 NC_009484.1 2879066 2880349 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; PpiC-type peptidyl-prolyl cis-trans isomerase complement(2879066..2880349) Acidiphilium cryptum JF-5 5162340 YP_001235736.1 CDS Acry_2626 NC_009484.1 2880346 2882586 R PFAM: OstA family protein; Organic solvent tolerance protein; organic solvent tolerance protein complement(2880346..2882586) Acidiphilium cryptum JF-5 5160698 YP_001235737.1 CDS Acry_2627 NC_009484.1 2882590 2883720 R PFAM: permease YjgP/YjgQ family protein; YjgP/YjgQ family permease complement(2882590..2883720) Acidiphilium cryptum JF-5 5160699 YP_001235738.1 CDS Acry_2628 NC_009484.1 2883717 2884877 R PFAM: permease YjgP/YjgQ family protein; YjgP/YjgQ family permease complement(2883717..2884877) Acidiphilium cryptum JF-5 5160477 YP_001235739.1 CDS Acry_2629 NC_009484.1 2884879 2885604 R involved in the de novo synthesis of pyridoxine (Vitamin B6); pyridoxine 5'-phosphate synthase complement(2884879..2885604) Acidiphilium cryptum JF-5 5160548 YP_001235740.1 CDS Acry_2630 NC_009484.1 2885601 2886578 R TIGRFAM: 4-hydroxythreonine-4-phosphate dehydrogenase; PFAM: Pyridoxal phosphate biosynthetic protein PdxA; 4-hydroxythreonine-4-phosphate dehydrogenase complement(2885601..2886578) Acidiphilium cryptum JF-5 5160549 YP_001235741.1 CDS Acry_2631 NC_009484.1 2886583 2887248 R hypothetical protein complement(2886583..2887248) Acidiphilium cryptum JF-5 5159450 YP_001235742.1 CDS Acry_2632 NC_009484.1 2887319 2887780 R PFAM: heat shock protein Hsp20; heat shock protein Hsp20 complement(2887319..2887780) Acidiphilium cryptum JF-5 5159770 YP_001235743.1 CDS rpmE NC_009484.1 2887983 2888210 R RpmE; there appears to be two types of ribosomal proteins L31 in bacterial genomes; some contain a CxxC motif while others do not; Bacillus subtilis has both types; the proteins in this cluster do not have the CXXC motif; RpmE is found in exponentially growing Bacilli while YtiA was found after exponential growth; expression of ytiA is controlled by a zinc-specific transcriptional repressor; RpmE contains one zinc ion and a CxxC motif is responsible for this binding; forms an RNP particle along with proteins L5, L18, and L25 and 5S rRNA; found crosslinked to L2 and L25 and EF-G; may be near the peptidyltransferase site of the 50S ribosome; 50S ribosomal protein L31 complement(2887983..2888210) Acidiphilium cryptum JF-5 5159771 YP_001235744.1 CDS Acry_2634 NC_009484.1 2888321 2888956 D PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 2888321..2888956 Acidiphilium cryptum JF-5 5160217 YP_001235745.1 CDS Acry_2635 NC_009484.1 2888940 2889569 R PFAM: HhH-GPD family protein; DNA-3-methyladenine glycosylase II complement(2888940..2889569) Acidiphilium cryptum JF-5 5159844 YP_001235746.1 CDS Acry_2636 NC_009484.1 2889580 2890170 R hypothetical protein complement(2889580..2890170) Acidiphilium cryptum JF-5 5159845 YP_001235747.1 CDS Acry_2637 NC_009484.1 2890212 2892254 R hypothetical protein complement(2890212..2892254) Acidiphilium cryptum JF-5 5160339 YP_001235748.1 CDS Acry_2638 NC_009484.1 2892448 2892675 D hypothetical protein 2892448..2892675 Acidiphilium cryptum JF-5 5160390 YP_001235749.1 CDS Acry_2639 NC_009484.1 2892747 2894324 D PFAM: helicase domain protein; DEAD/DEAH box helicase domain protein; SMART: DEAD-like helicases-like; DEAD/DEAH box helicase 2892747..2894324 Acidiphilium cryptum JF-5 5160391 YP_001235750.1 CDS Acry_2640 NC_009484.1 2894268 2896241 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator complement(2894268..2896241) Acidiphilium cryptum JF-5 5160406 YP_001235751.1 CDS Acry_2641 NC_009484.1 2896379 2897422 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 2896379..2897422 Acidiphilium cryptum JF-5 5160485 YP_001235752.1 CDS Acry_2642 NC_009484.1 2897483 2898499 D PFAM: amidohydrolase 2; amidohydrolase 2 2897483..2898499 Acidiphilium cryptum JF-5 5160486 YP_001235753.1 CDS Acry_2643 NC_009484.1 2898505 2899275 D PFAM: protein of unknown function DUF59; hypothetical protein 2898505..2899275 Acidiphilium cryptum JF-5 5160357 YP_001235754.1 CDS Acry_2644 NC_009484.1 2899257 2900195 R PFAM: DMSO reductase anchor subunit (DmsC); DMSO reductase anchor subunit (DmsC) complement(2899257..2900195) Acidiphilium cryptum JF-5 5159984 YP_001235755.1 CDS Acry_2645 NC_009484.1 2900192 2900935 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin complement(2900192..2900935) Acidiphilium cryptum JF-5 5159985 YP_001235756.1 CDS Acry_2646 NC_009484.1 2900932 2903739 R PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase Fe4S4 region complement(2900932..2903739) Acidiphilium cryptum JF-5 5159971 YP_001235757.1 CDS Acry_2647 NC_009484.1 2903815 2905251 R PFAM: Pyridoxal-dependent decarboxylase; pyridoxal-dependent decarboxylase complement(2903815..2905251) Acidiphilium cryptum JF-5 5160634 YP_001235758.1 CDS Acry_2648 NC_009484.1 2905350 2908499 R TIGRFAM: transporter, hydrophobe/amphiphile efflux-1 (HAE1) family; PFAM: acriflavin resistance protein; hydrophobe/amphiphile efflux-1 (HAE1) family protein complement(2905350..2908499) Acidiphilium cryptum JF-5 5160635 YP_001235759.1 CDS Acry_2649 NC_009484.1 2908504 2909667 R TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; RND family efflux transporter MFP subunit complement(2908504..2909667) Acidiphilium cryptum JF-5 5160048 YP_001235760.1 CDS Acry_2650 NC_009484.1 2909881 2911467 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(2909881..2911467) Acidiphilium cryptum JF-5 5160188 YP_001235761.1 CDS Acry_2651 NC_009484.1 2911471 2912661 R catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase complement(2911471..2912661) Acidiphilium cryptum JF-5 5160189 YP_001235762.1 CDS Acry_2652 NC_009484.1 2912766 2913509 R TIGRFAM: hemolysin A; PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ; RNA-binding S4 domain protein; hemolysin A complement(2912766..2913509) Acidiphilium cryptum JF-5 5160230 YP_001235763.1 CDS Acry_2653 NC_009484.1 2913517 2913849 R PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator complement(2913517..2913849) Acidiphilium cryptum JF-5 5160080 YP_001235764.1 CDS Acry_2654 NC_009484.1 2914129 2915376 R PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; methyltransferase small; Fmu (Sun) domain-containing protein complement(2914129..2915376) Acidiphilium cryptum JF-5 5160081 YP_001235765.1 CDS Acry_2655 NC_009484.1 2915602 2915907 D PFAM: protein of unknown function YGGT; hypothetical protein 2915602..2915907 Acidiphilium cryptum JF-5 5162070 YP_001235766.1 CDS Acry_2656 NC_009484.1 2915916 2916755 D PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; methylenetetrahydrofolate dehydrogenase 2915916..2916755 Acidiphilium cryptum JF-5 5159548 YP_001235767.1 CDS Acry_2657 NC_009484.1 2916855 2918309 R PFAM: Sporulation domain protein; Lytic transglycosylase, catalytic; lytic transglycosylase complement(2916855..2918309) Acidiphilium cryptum JF-5 5159549 YP_001235768.1 CDS Acry_2658 NC_009484.1 2918402 2918737 D hypothetical protein 2918402..2918737 Acidiphilium cryptum JF-5 5159668 YP_001235769.1 CDS Acry_2659 NC_009484.1 2918822 2919805 D PFAM: aldo/keto reductase; aldo/keto reductase 2918822..2919805 Acidiphilium cryptum JF-5 5159849 YP_001235770.1 CDS Acry_2660 NC_009484.1 2919875 2920513 R PFAM: GTP cyclohydrolase I; GTP cyclohydrolase I complement(2919875..2920513) Acidiphilium cryptum JF-5 5159850 YP_001235771.1 CDS apaG NC_009484.1 2920614 2921087 R protein associated with Co2+ and Mg2+ efflux; ApaG protein complement(2920614..2921087) Acidiphilium cryptum JF-5 5161453 YP_001235772.1 CDS Acry_2662 NC_009484.1 2921173 2922846 D SMART: Tetratricopeptide domain protein; tetratricopeptide domain-containing protein 2921173..2922846 Acidiphilium cryptum JF-5 5161994 YP_001235773.1 CDS Acry_2663 NC_009484.1 2922857 2923735 D TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase, C terminal domain protein; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase 2922857..2923735 Acidiphilium cryptum JF-5 5161995 YP_001235774.1 CDS Acry_2664 NC_009484.1 2923803 2924498 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase I 2923803..2924498 Acidiphilium cryptum JF-5 5161835 YP_001235775.1 CDS Acry_2665 NC_009484.1 2924495 2926678 D catalyzes the formation of 2-(formamido)-N1-(5-phospho-D-ribosyl)acetamidine from N2-formyl-N1-(5-phospho-D-ribosyl)glycinamide and L-glutamine in purine biosynthesis; phosphoribosylformylglycinamidine synthase II 2924495..2926678 Acidiphilium cryptum JF-5 5161441 YP_001235776.1 CDS Acry_2666 NC_009484.1 2926697 2926930 D PFAM: BolA family protein; BolA family protein 2926697..2926930 Acidiphilium cryptum JF-5 5161442 YP_001235777.1 CDS Acry_2667 NC_009484.1 2926964 2927311 D TIGRFAM: glutaredoxin-like protein; PFAM: glutaredoxin; glutaredoxin-like protein 2926964..2927311 Acidiphilium cryptum JF-5 5161894 YP_001235778.1 CDS Acry_2668 NC_009484.1 2927362 2928561 D hypothetical protein 2927362..2928561 Acidiphilium cryptum JF-5 5160623 YP_001235779.1 CDS Acry_2669 NC_009484.1 2928567 2932061 R biotin-containing enzyme that catalyzes a two step carboxylation of pyruvate to oxaloacetate; pyruvate carboxylase complement(2928567..2932061) Acidiphilium cryptum JF-5 5160624 YP_001235780.1 CDS Acry_2670 NC_009484.1 2932174 2933844 D PFAM: amine oxidase; amine oxidase 2932174..2933844 Acidiphilium cryptum JF-5 5162332 YP_001235781.1 CDS Acry_2671 NC_009484.1 2933953 2934606 D PFAM: multiple antibiotic resistance (MarC)-related protein; multiple antibiotic resistance (MarC)-like protein 2933953..2934606 Acidiphilium cryptum JF-5 5162507 YP_001235782.1 CDS Acry_2672 NC_009484.1 2934850 2935470 R hypothetical protein complement(2934850..2935470) Acidiphilium cryptum JF-5 5162508 YP_001235783.1 CDS Acry_2673 NC_009484.1 2935481 2935696 D hypothetical protein 2935481..2935696 Acidiphilium cryptum JF-5 5161984 YP_001235784.1 CDS Acry_2674 NC_009484.1 2935866 2936570 R hypothetical protein complement(2935866..2936570) Acidiphilium cryptum JF-5 5162131 YP_001235785.1 CDS gltX NC_009484.1 2936632 2937966 R Charges one glutamine molecule and pairs it to its corresponding RNA trinucleotide during protein translation; glutamyl-tRNA synthetase complement(2936632..2937966) Acidiphilium cryptum JF-5 5162132 YP_001235786.1 CDS Acry_2676 NC_009484.1 2938058 2939248 D PFAM: major facilitator superfamily MFS_1; major facilitator transporter 2938058..2939248 Acidiphilium cryptum JF-5 5161354 YP_001235787.1 CDS Acry_2677 NC_009484.1 2939309 2939758 D Transcriptional regulator that represses the manganese transporter MntH when manganese is present; manganese transport regulator MntR 2939309..2939758 Acidiphilium cryptum JF-5 5160483 YP_001235788.1 CDS Acry_2678 NC_009484.1 2939903 2940358 D hypothetical protein 2939903..2940358 Acidiphilium cryptum JF-5 5160484 YP_001235789.1 CDS Acry_2679 NC_009484.1 2940374 2941432 R PFAM: protein of unknown function UPF0118; hypothetical protein complement(2940374..2941432) Acidiphilium cryptum JF-5 5161350 YP_001235790.1 CDS Acry_2680 NC_009484.1 2941441 2941716 R PFAM: acylphosphatase; acylphosphatase complement(2941441..2941716) Acidiphilium cryptum JF-5 5162108 YP_001235791.1 CDS Acry_2681 NC_009484.1 2941713 2942414 R PFAM: ATP12 ATPase; ATP12 ATPase complement(2941713..2942414) Acidiphilium cryptum JF-5 5162109 YP_001235792.1 CDS Acry_2682 NC_009484.1 2942425 2945112 R PFAM: AsmA family protein; AsmA family protein complement(2942425..2945112) Acidiphilium cryptum JF-5 5161935 YP_001235793.1 CDS Acry_2683 NC_009484.1 2945176 2947077 R hypothetical protein complement(2945176..2947077) Acidiphilium cryptum JF-5 5162500 YP_001235794.1 CDS Acry_2684 NC_009484.1 2947083 2948102 R PFAM: protein of unknown function DUF1022; hypothetical protein complement(2947083..2948102) Acidiphilium cryptum JF-5 5162501 YP_001235795.1 CDS Acry_2685 NC_009484.1 2948221 2949180 D PFAM: Succinylglutamate desuccinylase/aspartoacylase; succinylglutamate desuccinylase/aspartoacylase 2948221..2949180 Acidiphilium cryptum JF-5 5162511 YP_001235796.1 CDS Acry_2686 NC_009484.1 2949191 2950069 R PFAM: CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase complement(2949191..2950069) Acidiphilium cryptum JF-5 5160453 YP_001235797.1 CDS Acry_2687 NC_009484.1 2950066 2950755 R catalyzes the decarboxylaton of phospatidyl-L-sering to phosphatidylethanolamine; phosphatidylserine decarboxylase complement(2950066..2950755) Acidiphilium cryptum JF-5 5160454 YP_001235798.1 CDS Acry_2688 NC_009484.1 2950816 2951901 R PFAM: Peptidoglycan-binding LysM; peptidoglycan-binding LysM complement(2950816..2951901) Acidiphilium cryptum JF-5 5160966 YP_001235799.1 CDS Acry_2689 NC_009484.1 2951995 2952579 D PFAM: conserved hypothetical protein 730; hypothetical protein 2951995..2952579 Acidiphilium cryptum JF-5 5160264 YP_001235800.1 CDS Acry_2690 NC_009484.1 2952725 2953597 R ribonuclease G and E-like protein complement(2952725..2953597) Acidiphilium cryptum JF-5 5160265 YP_001235801.1 CDS Acry_2691 NC_009484.1 2953594 2954160 R TIGRFAM: maf protein; PFAM: Maf family protein; maf protein complement(2953594..2954160) Acidiphilium cryptum JF-5 5161917 YP_001235802.1 CDS infA NC_009484.1 2954174 2954392 R stimulates the activities of the other two initiation factors, IF-2 and IF-3; translation initiation factor IF-1 complement(2954174..2954392) Acidiphilium cryptum JF-5 5161522 YP_001235803.1 CDS Acry_2693 NC_009484.1 2954445 2955755 R PFAM: histidinol dehydrogenase; histidinol dehydrogenase complement(2954445..2955755) Acidiphilium cryptum JF-5 5161523 YP_001235804.1 CDS hisG NC_009484.1 2955752 2956465 R short form of enzyme; requires HisZ for function; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms heteromultimer of HisG and HisZ; ATP phosphoribosyltransferase catalytic subunit complement(2955752..2956465) Acidiphilium cryptum JF-5 5159707 YP_001235805.1 CDS Acry_2695 NC_009484.1 2956513 2957457 D PFAM: pyruvate carboxyltransferase; pyruvate carboxyltransferase 2956513..2957457 Acidiphilium cryptum JF-5 5159821 YP_001235806.1 CDS Acry_2696 NC_009484.1 2957468 2958646 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 2957468..2958646 Acidiphilium cryptum JF-5 5159822 YP_001235807.1 CDS Acry_2697 NC_009484.1 2958674 2959546 D PFAM: 6-phosphogluconate dehydrogenase, NAD-binding; 3-hydroxyisobutyrate dehydrogenase 2958674..2959546 Acidiphilium cryptum JF-5 5161472 YP_001235808.1 CDS Acry_2698 NC_009484.1 2959538 2959756 R hypothetical protein complement(2959538..2959756) Acidiphilium cryptum JF-5 5161477 YP_001235809.1 CDS Acry_2699 NC_009484.1 2959852 2960790 D hypothetical protein 2959852..2960790 Acidiphilium cryptum JF-5 5161478 YP_001235810.1 CDS Acry_2700 NC_009484.1 2960807 2961979 D TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; radical SAM protein 2960807..2961979 Acidiphilium cryptum JF-5 5159857 YP_001235811.1 CDS Acry_2701 NC_009484.1 2962005 2962712 D PFAM: short-chain dehydrogenase/reductase SDR; KR; short-chain dehydrogenase/reductase SDR 2962005..2962712 Acidiphilium cryptum JF-5 5161552 YP_001235812.1 CDS rpmB NC_009484.1 2962859 2963161 D required for 70S ribosome assembly; 50S ribosomal protein L28 2962859..2963161 Acidiphilium cryptum JF-5 5161553 YP_001235813.1 CDS Acry_2703 NC_009484.1 2963363 2963866 D hypothetical protein 2963363..2963866 Acidiphilium cryptum JF-5 5161203 YP_001235814.1 CDS Acry_2704 NC_009484.1 2963863 2964675 D TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase, coenzyme F420-dependent; pyrroline-5-carboxylate reductase 2963863..2964675 Acidiphilium cryptum JF-5 5161543 YP_001235815.1 CDS Acry_2705 NC_009484.1 2965020 2966549 D PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 2965020..2966549 Acidiphilium cryptum JF-5 5161544 YP_001235816.1 CDS Acry_2706 NC_009484.1 2966555 2966857 D hypothetical protein 2966555..2966857 Acidiphilium cryptum JF-5 5161810 YP_001235817.1 CDS Acry_2707 NC_009484.1 2966854 2967219 D PFAM: response regulator receiver; response regulator receiver protein 2966854..2967219 Acidiphilium cryptum JF-5 5159589 YP_001235818.1 CDS Acry_2708 NC_009484.1 2967216 2969423 D PFAM: CheW domain protein; ATP-binding region, ATPase domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; CheA signal transduction histidine kinase 2967216..2969423 Acidiphilium cryptum JF-5 5159590 YP_001235819.1 CDS Acry_2709 NC_009484.1 2969427 2969891 D PFAM: CheW domain protein; putative CheW protein 2969427..2969891 Acidiphilium cryptum JF-5 5162601 YP_001235820.1 CDS Acry_2710 NC_009484.1 2969888 2970784 D PFAM: MCP methyltransferase, CheR-type; protein-glutamate O-methyltransferase 2969888..2970784 Acidiphilium cryptum JF-5 5162525 YP_001235821.1 CDS Acry_2711 NC_009484.1 2970781 2971833 D regulates chemotaxis by demethylation of methyl-accepting chemotaxis proteins; chemotaxis-specific methylesterase 2970781..2971833 Acidiphilium cryptum JF-5 5162526 YP_001235822.1 CDS Acry_2712 NC_009484.1 2971833 2972228 D PFAM: response regulator receiver; response regulator receiver protein 2971833..2972228 Acidiphilium cryptum JF-5 5159605 YP_001235823.1 CDS Acry_2713 NC_009484.1 2972225 2972797 D PFAM: CheD family protein; MCP proteins methylation stimulator CheD 2972225..2972797 Acidiphilium cryptum JF-5 5159675 YP_001235824.1 CDS Acry_2714 NC_009484.1 2972814 2973212 D hypothetical protein 2972814..2973212 Acidiphilium cryptum JF-5 5159676 YP_001235825.1 CDS Acry_2715 NC_009484.1 2973448 2973747 D hypothetical protein 2973448..2973747 Acidiphilium cryptum JF-5 5159577 YP_001235826.1 CDS Acry_2716 NC_009484.1 2973767 2974312 R PFAM: protein of unknown function DUF1486; hypothetical protein complement(2973767..2974312) Acidiphilium cryptum JF-5 5161632 YP_001235827.1 CDS Acry_2717 NC_009484.1 2974512 2975348 D PFAM: beta-lactamase domain protein; beta-lactamase domain-containing protein 2974512..2975348 Acidiphilium cryptum JF-5 5161633 YP_001235828.1 CDS Acry_2718 NC_009484.1 2975412 2976302 R binds with the catalytic core of RNA polymerase to produce the holoenzyme; this sigma factor is responsible for the expression of heat shock promoters; RNA polymerase factor sigma-32 complement(2975412..2976302) Acidiphilium cryptum JF-5 5161849 YP_001235829.1 CDS Acry_2719 NC_009484.1 2976587 2977585 R TIGRFAM: pseudouridine synthase, RluA family; PFAM: RNA-binding S4 domain protein; pseudouridine synthase; RluA family pseudouridine synthase complement(2976587..2977585) Acidiphilium cryptum JF-5 5161485 YP_001235830.1 CDS Acry_2720 NC_009484.1 2977636 2978004 D hypothetical protein 2977636..2978004 Acidiphilium cryptum JF-5 5161486 YP_001235831.1 CDS Acry_2721 NC_009484.1 2978619 2979230 D PFAM: protein of unknown function DUF1555; hypothetical protein 2978619..2979230 Acidiphilium cryptum JF-5 5162073 YP_001235832.1 CDS Acry_2722 NC_009484.1 2979382 2980788 D catalyzes the oxidation of tricarballylate to cis-aconitate; FAD-dependent; required for the utilization of tricarballylate as a carbon and energy source by S. enterica; tricarballylate dehydrogenase 2979382..2980788 Acidiphilium cryptum JF-5 5160722 YP_001235833.1 CDS Acry_2723 NC_009484.1 2980775 2981893 D TIGRFAM: CitB domain protein; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; CitB domain-containing protein 2980775..2981893 Acidiphilium cryptum JF-5 5160723 YP_001235834.1 CDS Acry_2724 NC_009484.1 2981990 2983294 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; major facilitator transporter 2981990..2983294 Acidiphilium cryptum JF-5 5162099 YP_001235835.1 CDS Acry_2725 NC_009484.1 2983350 2983892 R hypothetical protein complement(2983350..2983892) Acidiphilium cryptum JF-5 5160016 YP_001235836.1 CDS Acry_2726 NC_009484.1 2984412 2986178 R PFAM: Amidase; amidase complement(2984412..2986178) Acidiphilium cryptum JF-5 5160017 YP_001235837.1 CDS Acry_2727 NC_009484.1 2986175 2989663 R TIGRFAM: urea amidolyase related protein; biotin carboxylation domain protein; PFAM: biotin/lipoyl attachment domain-containing protein; Allophanate hydrolase subunit 2; Allophanate hydrolase subunit 1; Carbamoyl-phosphate synthase L chain, ATP-binding; Carbamoyl-phosphate synthetase large chain domain protein; biotin carboxylase domain protein; biotin carboxylase complement(2986175..2989663) Acidiphilium cryptum JF-5 5160021 YP_001235838.1 CDS Acry_2728 NC_009484.1 2989660 2990292 R hypothetical protein complement(2989660..2990292) Acidiphilium cryptum JF-5 5160678 YP_001235839.1 CDS Acry_2729 NC_009484.1 2990300 2991082 R hypothetical protein complement(2990300..2991082) Acidiphilium cryptum JF-5 5160679 YP_001235840.1 CDS Acry_2730 NC_009484.1 2991155 2991997 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(2991155..2991997) Acidiphilium cryptum JF-5 5162087 YP_001235841.1 CDS Acry_2731 NC_009484.1 2991994 2992812 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(2991994..2992812) Acidiphilium cryptum JF-5 5161734 YP_001235842.1 CDS Acry_2732 NC_009484.1 2992821 2993900 R ABC-type nitrate/sulfonate/bicarbonate transport systems periplasmic components-like protein complement(2992821..2993900) Acidiphilium cryptum JF-5 5161735 YP_001235843.1 CDS Acry_2733 NC_009484.1 2994341 2994916 D hypothetical protein 2994341..2994916 Acidiphilium cryptum JF-5 5161002 YP_001235844.1 CDS Acry_2734 NC_009484.1 2995015 2996388 D glucose/sorbosone dehydrogenase-like protein 2995015..2996388 Acidiphilium cryptum JF-5 5161255 YP_001235845.1 CDS Acry_2735 NC_009484.1 2996407 2999511 R PFAM: acriflavin resistance protein; acriflavin resistance protein complement(2996407..2999511) Acidiphilium cryptum JF-5 5161256 YP_001235846.1 CDS Acry_2736 NC_009484.1 2999521 3000441 R hypothetical protein complement(2999521..3000441) Acidiphilium cryptum JF-5 5160047 YP_001235847.1 CDS Acry_2737 NC_009484.1 3000438 3001841 R PFAM: outer membrane efflux protein; outer membrane efflux protein complement(3000438..3001841) Acidiphilium cryptum JF-5 5160979 YP_001235848.1 CDS Acry_2738 NC_009484.1 3002001 3002930 R PFAM: dihydrodipicolinate synthetase; dihydrodipicolinate synthetase complement(3002001..3002930) Acidiphilium cryptum JF-5 5160980 YP_001235849.1 CDS Acry_2739 NC_009484.1 3003165 3003938 D PFAM: protein of unknown function DUF347; hypothetical protein 3003165..3003938 Acidiphilium cryptum JF-5 5161032 YP_001235850.1 CDS Acry_2740 NC_009484.1 3003987 3004838 D TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase 3003987..3004838 Acidiphilium cryptum JF-5 5162344 YP_001235851.1 CDS Acry_2741 NC_009484.1 3005056 3005967 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3005056..3005967 Acidiphilium cryptum JF-5 5162345 YP_001235852.1 CDS Acry_2742 NC_009484.1 3006015 3006917 D hypothetical protein 3006015..3006917 Acidiphilium cryptum JF-5 5161162 YP_001235853.1 CDS Acry_2743 NC_009484.1 3006914 3007744 D PFAM: extracellular solute-binding protein, family 3; extracellular solute-binding protein 3006914..3007744 Acidiphilium cryptum JF-5 5161167 YP_001235854.1 CDS Acry_2744 NC_009484.1 3007760 3008488 D TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; polar amino acid ABC transporter inner membrane subunit 3007760..3008488 Acidiphilium cryptum JF-5 5161168 YP_001235855.1 CDS Acry_2745 NC_009484.1 3008481 3009227 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3008481..3009227 Acidiphilium cryptum JF-5 5160883 YP_001235856.1 CDS Acry_2746 NC_009484.1 3009251 3010636 D PFAM: fumarate lyase; fumarate lyase 3009251..3010636 Acidiphilium cryptum JF-5 5159758 YP_001235857.1 CDS Acry_2747 NC_009484.1 3010889 3011377 R catalyzes the conversion of guanine, xanthine and, to a lesser extent, hypoxanthine to GMP, XMP and IMP, respectively; xanthine-guanine phosphoribosyltransferase complement(3010889..3011377) Acidiphilium cryptum JF-5 5159759 YP_001235858.1 CDS Acry_2748 NC_009484.1 3011377 3011730 R TIGRFAM: export-related chaperone CsaA; PFAM: t-RNA-binding domain protein; export-related chaperone CsaA complement(3011377..3011730) Acidiphilium cryptum JF-5 5161322 YP_001235859.1 CDS Acry_2749 NC_009484.1 3011819 3013429 D PFAM: gamma-glutamyltranspeptidase; gamma-glutamyltransferase 3011819..3013429 Acidiphilium cryptum JF-5 5160739 YP_001235860.1 CDS Acry_2750 NC_009484.1 3013494 3014120 D hypothetical protein 3013494..3014120 Acidiphilium cryptum JF-5 5160740 YP_001235861.1 CDS Acry_2751 NC_009484.1 3014146 3016131 D EF-G; promotes GTP-dependent translocation of the ribosome during translation; many organisms have multiple copies of this gene; elongation factor G 3014146..3016131 Acidiphilium cryptum JF-5 5160675 YP_001235862.1 CDS Acry_2752 NC_009484.1 3016153 3016938 D PFAM: Enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 3016153..3016938 Acidiphilium cryptum JF-5 5161376 YP_001235863.1 CDS Acry_2753 NC_009484.1 3017008 3017730 R TIGRFAM: acetoacetyl-CoA reductase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR; acetoacetyl-CoA reductase complement(3017008..3017730) Acidiphilium cryptum JF-5 5161377 YP_001235864.1 CDS Acry_2754 NC_009484.1 3017838 3018542 R PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 complement(3017838..3018542) Acidiphilium cryptum JF-5 5161391 YP_001235865.1 CDS Acry_2755 NC_009484.1 3018539 3019009 R PFAM: OsmC family protein; OsmC family protein complement(3018539..3019009) Acidiphilium cryptum JF-5 5161361 YP_001235866.1 CDS Acry_2756 NC_009484.1 3019020 3019376 R PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; putative 6-pyruvoyl tetrahydropterin synthase complement(3019020..3019376) Acidiphilium cryptum JF-5 5161362 YP_001235867.1 CDS Acry_2757 NC_009484.1 3019379 3020014 R organic radical activating-like protein complement(3019379..3020014) Acidiphilium cryptum JF-5 5160300 YP_001235868.1 CDS Acry_2758 NC_009484.1 3020122 3021006 D hypothetical protein 3020122..3021006 Acidiphilium cryptum JF-5 5160663 YP_001235869.1 CDS Acry_2759 NC_009484.1 3021230 3022447 D TIGRFAM: polyhydroxyalkanoate depolymerase, intracellular; PFAM: PHB de-polymerase domain protein; polyhydroxyalkanoate depolymerase 3021230..3022447 Acidiphilium cryptum JF-5 5160664 YP_001235870.1 CDS Acry_2760 NC_009484.1 3022428 3023075 R TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; dephospho-CoA kinase complement(3022428..3023075) Acidiphilium cryptum JF-5 5162397 YP_001235871.1 CDS Acry_2761 NC_009484.1 3023072 3023902 R TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate/quinate 5-dehydrogenase; Shikimate dehydrogenase substrate binding, N-terminal domain protein; shikimate 5-dehydrogenase complement(3023072..3023902) Acidiphilium cryptum JF-5 5160011 YP_001235872.1 CDS Acry_2762 NC_009484.1 3023995 3024696 D PFAM: short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 3023995..3024696 Acidiphilium cryptum JF-5 5160012 YP_001235873.1 CDS Acry_2763 NC_009484.1 3024714 3025328 R PFAM: DSBA oxidoreductase; DSBA oxidoreductase complement(3024714..3025328) Acidiphilium cryptum JF-5 5161812 YP_001235874.1 CDS purU NC_009484.1 3025442 3026293 D produces formate from formyl-tetrahydrofolate which is the major source of formate for PurT in de novo purine nucleotide biosynthesis; has a role in one-carbon metabolism; forms a homohexamer; activated by methionine and inhibited by glycine; formyltetrahydrofolate deformylase 3025442..3026293 Acidiphilium cryptum JF-5 5161772 YP_001235875.1 CDS Acry_2765 NC_009484.1 3026318 3026995 D TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease, RNase T and DNA polymerase III; SMART: Exonuclease; DNA polymerase III subunit epsilon 3026318..3026995 Acidiphilium cryptum JF-5 5161773 YP_001235876.1 CDS Acry_2766 NC_009484.1 3027121 3029211 R PFAM: peptidase S9, prolyl oligopeptidase active site domain protein; peptidase S9A, prolyl oligopeptidase domain protein beta-propeller; oligopeptidase B complement(3027121..3029211) Acidiphilium cryptum JF-5 5161865 YP_001235877.1 CDS Acry_2767 NC_009484.1 3029225 3030898 R PFAM: formate-tetrahydrofolate ligase, FTHFS; formate--tetrahydrofolate ligase complement(3029225..3030898) Acidiphilium cryptum JF-5 5160043 YP_001235878.1 CDS Acry_2768 NC_009484.1 3030993 3031442 D hypothetical protein 3030993..3031442 Acidiphilium cryptum JF-5 5160044 YP_001235879.1 CDS Acry_2769 NC_009484.1 3031471 3032385 D TIGRFAM: putative agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; putative agmatinase 3031471..3032385 Acidiphilium cryptum JF-5 5160104 YP_001235880.1 CDS Acry_2770 NC_009484.1 3032448 3033419 R hypothetical protein complement(3032448..3033419) Acidiphilium cryptum JF-5 5159786 YP_001235881.1 CDS Acry_2771 NC_009484.1 3033436 3034797 D catalyzes the hydrolysis of a monocarboxylic acid amid to form a monocarboxylate and ammonia; amidase 3033436..3034797 Acidiphilium cryptum JF-5 5159787 YP_001235882.1 CDS Acry_2772 NC_009484.1 3034905 3036080 D fumarylacetoacetate (FAA) hydrolase family protein 3034905..3036080 Acidiphilium cryptum JF-5 5161977 YP_001235883.1 CDS Acry_2773 NC_009484.1 3036203 3036835 R PFAM: Lysine exporter protein (LYSE/YGGA); lysine exporter protein LysE/YggA complement(3036203..3036835) Acidiphilium cryptum JF-5 5161955 YP_001235884.1 CDS Acry_2774 NC_009484.1 3036910 3037797 D specific inhibitor of chromosomal initiation of replication in vitro; binds the three 13-mers in the origin (oriC) to block initiation of replication; also controls genes involved in arginine transport; chromosome replication initiation inhibitor protein 3036910..3037797 Acidiphilium cryptum JF-5 5161956 YP_001235885.1 CDS Acry_2775 NC_009484.1 3037868 3038722 R integral membrane protein-like protein complement(3037868..3038722) Acidiphilium cryptum JF-5 5161987 YP_001235886.1 CDS Acry_2776 NC_009484.1 3038889 3039767 R PFAM: aldo/keto reductase; putative oxidoreductase complement(3038889..3039767) Acidiphilium cryptum JF-5 5162503 YP_001235887.1 CDS Acry_2777 NC_009484.1 3039896 3040765 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3039896..3040765 Acidiphilium cryptum JF-5 5162504 YP_001235888.1 CDS Acry_2778 NC_009484.1 3040880 3041824 D PFAM: protein of unknown function DUF849; hypothetical protein 3040880..3041824 Acidiphilium cryptum JF-5 5160163 YP_001235889.1 CDS Acry_2779 NC_009484.1 3041870 3042808 D Converts (S)-3-hydroxyactk-CoA to 3-oxoayl-CoA; 3-hydroxyacyl-CoA dehydrogenase 3041870..3042808 Acidiphilium cryptum JF-5 5160445 YP_001235890.1 CDS Acry_2780 NC_009484.1 3042995 3044083 D ABC-type sugar transport system periplasmic component-like protein 3042995..3044083 Acidiphilium cryptum JF-5 5160446 YP_001235891.1 CDS Acry_2781 NC_009484.1 3044080 3045564 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3044080..3045564 Acidiphilium cryptum JF-5 5162425 YP_001235892.1 CDS Acry_2782 NC_009484.1 3045575 3046516 D PFAM: inner-membrane translocator; inner-membrane translocator 3045575..3046516 Acidiphilium cryptum JF-5 5160611 YP_001235893.1 CDS Acry_2783 NC_009484.1 3046526 3047464 D PFAM: inner-membrane translocator; inner-membrane translocator 3046526..3047464 Acidiphilium cryptum JF-5 5160612 YP_001235894.1 CDS Acry_2784 NC_009484.1 3047498 3048787 R catalyzes the formation of N6-(1,2,-dicarboxyethyl)-AMP from L-aspartate, inosine monophosphate and GTP in AMP biosynthesis; adenylosuccinate synthetase complement(3047498..3048787) Acidiphilium cryptum JF-5 5159997 YP_001235895.1 CDS Acry_2785 NC_009484.1 3048792 3049928 R PFAM: tRNA synthetase, class II (G, H, P and S); tRNA synthetase complement(3048792..3049928) Acidiphilium cryptum JF-5 5159794 YP_001235896.1 CDS Acry_2786 NC_009484.1 3050078 3051535 D PFAM: membrane bound O-acyl transferase, MBOAT family protein; membrane bound O-acyl transferase, MBOAT family protein 3050078..3051535 Acidiphilium cryptum JF-5 5159795 YP_001235897.1 CDS Acry_2787 NC_009484.1 3051535 3052605 D hypothetical protein 3051535..3052605 Acidiphilium cryptum JF-5 5161101 YP_001235898.1 CDS Acry_2788 NC_009484.1 3052499 3053059 R PFAM: nucleoside 2-deoxyribosyltransferase; nucleoside 2-deoxyribosyltransferase complement(3052499..3053059) Acidiphilium cryptum JF-5 5160876 YP_001235899.1 CDS Acry_2789 NC_009484.1 3053056 3055062 R PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator complement(3053056..3055062) Acidiphilium cryptum JF-5 5160877 YP_001235900.1 CDS Acry_2790 NC_009484.1 3055360 3057207 D PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 3055360..3057207 Acidiphilium cryptum JF-5 5160543 YP_001235901.1 CDS Acry_2791 NC_009484.1 3057344 3058213 D SMART: extracellular solute-binding protein, family 3; extracellular solute-binding protein 3057344..3058213 Acidiphilium cryptum JF-5 5160466 YP_001235902.1 CDS Acry_2792 NC_009484.1 3058254 3059003 D PFAM: cytochrome c, class I; cytochrome c, class I 3058254..3059003 Acidiphilium cryptum JF-5 5160467 YP_001235903.1 CDS Acry_2793 NC_009484.1 3059061 3059633 D catalyzes the reaction of formaldehyde with glutathione to form S-hydroxymethylglutathione; glutathione-dependent formaldehyde-activating protein 3059061..3059633 Acidiphilium cryptum JF-5 5159896 YP_001235904.1 CDS Acry_2794 NC_009484.1 3059743 3060765 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 3059743..3060765 Acidiphilium cryptum JF-5 5161224 YP_001235905.1 CDS Acry_2795 NC_009484.1 3060765 3062870 D PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor 3060765..3062870 Acidiphilium cryptum JF-5 5161225 YP_001235906.1 CDS Acry_2796 NC_009484.1 3062883 3064379 R PFAM: FAD linked oxidase domain protein; FAD linked oxidase domain-containing protein complement(3062883..3064379) Acidiphilium cryptum JF-5 5162227 YP_001235907.1 CDS Acry_2797 NC_009484.1 3064491 3066164 D PFAM: Pyrrolo-quinoline quinone; Pyrrolo-quinoline quinone 3064491..3066164 Acidiphilium cryptum JF-5 5160035 YP_001235908.1 CDS Acry_2798 NC_009484.1 3066164 3067396 D PFAM: cytochrome c, class I; cytochrome c, class I 3066164..3067396 Acidiphilium cryptum JF-5 5160036 YP_001235909.1 CDS Acry_2799 NC_009484.1 3067479 3069152 R hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide; sulfite reductase subunit beta complement(3067479..3069152) Acidiphilium cryptum JF-5 5160218 YP_001235910.1 CDS Acry_2800 NC_009484.1 3069182 3069865 R PFAM: phosphoadenosine phosphosulfate reductase; phosphoadenosine phosphosulfate reductase complement(3069182..3069865) Acidiphilium cryptum JF-5 5160173 YP_001235911.1 CDS Acry_2801 NC_009484.1 3069865 3071613 R PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; FAD-binding domain protein; flavodoxin/nitric oxide synthase; flavodoxin/nitric oxide synthase complement(3069865..3071613) Acidiphilium cryptum JF-5 5160174 YP_001235912.1 CDS Acry_2802 NC_009484.1 3071618 3072409 R TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; uroporphyrin-III C-methyltransferase complement(3071618..3072409) Acidiphilium cryptum JF-5 5160706 YP_001235913.1 CDS Acry_2803 NC_009484.1 3072406 3072966 R TIGRFAM: siroheme synthase; siroheme synthase complement(3072406..3072966) Acidiphilium cryptum JF-5 5160708 YP_001235914.1 CDS Acry_2804 NC_009484.1 3073118 3073627 D PFAM: regulatory protein, AsnC/Lrp family; AsnC family transcriptional regulator 3073118..3073627 Acidiphilium cryptum JF-5 5160709 YP_001235915.1 CDS Acry_2805 NC_009484.1 3073650 3074189 R TIGRFAM: molybdenum cofactor synthesis domain; molybdenum cofactor biosynthesis protein B; PFAM: molybdopterin binding domain; molybdenum cofactor biosynthesis protein B complement(3073650..3074189) Acidiphilium cryptum JF-5 5160787 YP_001235916.1 CDS Acry_2806 NC_009484.1 3074272 3075087 D PFAM: protein of unknown function DUF1295; hypothetical protein 3074272..3075087 Acidiphilium cryptum JF-5 5161030 YP_001235917.1 CDS Acry_2807 NC_009484.1 3075157 3076182 D PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase 3075157..3076182 Acidiphilium cryptum JF-5 5161031 YP_001235918.1 CDS Acry_2808 NC_009484.1 3076182 3076748 D hypothetical protein 3076182..3076748 Acidiphilium cryptum JF-5 5161086 YP_001235919.1 CDS Acry_2810 NC_009484.1 3078424 3079197 R PFAM: EAL domain protein; diguanylate phosphodiesterase complement(3078424..3079197) Acidiphilium cryptum JF-5 5161698 YP_001235920.1 CDS Acry_2811 NC_009484.1 3079459 3079830 D SMART: regulatory protein, ArsR; regulatory protein ArsR 3079459..3079830 Acidiphilium cryptum JF-5 5161161 YP_001235921.1 CDS Acry_2812 NC_009484.1 3079827 3080249 D TIGRFAM: arsenate reductase; PFAM: arsenate reductase and related; arsenate reductase 3079827..3080249 Acidiphilium cryptum JF-5 5161247 YP_001235922.1 CDS Acry_2813 NC_009484.1 3080280 3081596 D TIGRFAM: arsenical pump membrane protein; PFAM: Arsenical pump membrane protein; Citrate transporter; arsenical pump membrane protein 3080280..3081596 Acidiphilium cryptum JF-5 5160091 YP_001235923.1 CDS Acry_2814 NC_009484.1 3081943 3082665 R PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator complement(3081943..3082665) Acidiphilium cryptum JF-5 5161699 YP_001235924.1 CDS Acry_2815 NC_009484.1 3082884 3084038 D PFAM: GTP cyclohydrolase II; GTP cyclohydrolase II 3082884..3084038 Acidiphilium cryptum JF-5 5161571 YP_001235925.1 CDS Acry_2816 NC_009484.1 3084047 3084562 D hypothetical protein 3084047..3084562 Acidiphilium cryptum JF-5 5161727 YP_001235926.1 CDS Acry_2817 NC_009484.1 3084556 3084885 R hypothetical protein complement(3084556..3084885) Acidiphilium cryptum JF-5 5161728 YP_001235927.1 CDS Acry_2818 NC_009484.1 3085081 3085443 D PFAM: Septum formation initiator; septum formation initiator 3085081..3085443 Acidiphilium cryptum JF-5 5160581 YP_001235928.1 CDS Acry_2819 NC_009484.1 3085651 3086688 D PFAM: dehydrogenase, E1 component; pyruvate dehydrogenase 3085651..3086688 Acidiphilium cryptum JF-5 5162103 YP_001235929.1 CDS Acry_2820 NC_009484.1 3086691 3088040 D catalyzes the oxidative decarboxylation of pyruvate with concomitant acetylation of a lipoic acid-containing dihydrolipoamide acetyltransferase within the complex. The E1 component of the pyruvate dehydrogenase complex catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2). It contains multiple copies of three enzymatic components: pyruvate dehydrogenase (E1), dihydrolipoamide acetyltransferase(E2) and lipoamide dehydrogenase; pyruvate dehydrogenase subunit beta 3086691..3088040 Acidiphilium cryptum JF-5 5162104 YP_001235930.1 CDS Acry_2821 NC_009484.1 3088054 3089331 D TIGRFAM: pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase; PFAM: biotin/lipoyl attachment domain-containing protein; catalytic domain of components of various dehydrogenase complexes; E3 binding domain protein; pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase 3088054..3089331 Acidiphilium cryptum JF-5 5159905 YP_001235931.1 CDS Acry_2822 NC_009484.1 3089328 3089837 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3089328..3089837 Acidiphilium cryptum JF-5 5159972 YP_001235932.1 CDS Acry_2823 NC_009484.1 3089848 3091245 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; dihydrolipoamide dehydrogenase 3089848..3091245 Acidiphilium cryptum JF-5 5159973 YP_001235933.1 CDS Acry_2824 NC_009484.1 3091252 3092214 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 3091252..3092214 Acidiphilium cryptum JF-5 5160374 YP_001235934.1 CDS Acry_2825 NC_009484.1 3092216 3092686 D PFAM: cyclase/dehydrase; cyclase/dehydrase 3092216..3092686 Acidiphilium cryptum JF-5 5162426 YP_001235935.1 CDS Acry_2826 NC_009484.1 3092688 3093746 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aromatic amino acid beta-eliminating lyase/threonine aldolase 3092688..3093746 Acidiphilium cryptum JF-5 5162427 YP_001235936.1 CDS Acry_2827 NC_009484.1 3093889 3095022 R PFAM: Di-haem cytochrome c peroxidase; cytochrome-c peroxidase complement(3093889..3095022) Acidiphilium cryptum JF-5 5162375 YP_001235937.1 CDS Acry_2828 NC_009484.1 3095186 3095770 R PFAM: NADPH-dependent FMN reductase; NADPH-dependent FMN reductase complement(3095186..3095770) Acidiphilium cryptum JF-5 5162592 YP_001235938.1 CDS Acry_2829 NC_009484.1 3095778 3096803 R PFAM: aldo/keto reductase; aldo/keto reductase complement(3095778..3096803) Acidiphilium cryptum JF-5 5162593 YP_001235939.1 CDS Acry_2830 NC_009484.1 3096908 3097819 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3096908..3097819 Acidiphilium cryptum JF-5 5159641 YP_001235940.1 CDS Acry_2831 NC_009484.1 3097819 3098088 D hypothetical protein 3097819..3098088 Acidiphilium cryptum JF-5 5160788 YP_001235941.1 CDS ilvH NC_009484.1 3098153 3098647 R with IlvI catalyzes the formation of 2-acetolactate from pyruvate, the small subunit is required for full activity and valine sensitivity; E.coli produces 3 isoenzymes of acetolactate synthase which differ in specificity to substrates, valine sensitivity and affinity for cofactors; also known as acetolactate synthase 3 small subunit; acetolactate synthase 3 regulatory subunit complement(3098153..3098647) Acidiphilium cryptum JF-5 5160789 YP_001235942.1 CDS Acry_2833 NC_009484.1 3098722 3100503 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate enzyme domain protein TPP-binding; thiamine pyrophosphate enzyme, central region; thiamine pyrophosphate enzyme TPP binding domain protein; acetolactate synthase large subunit complement(3098722..3100503) Acidiphilium cryptum JF-5 5161829 YP_001235943.1 CDS Acry_2834 NC_009484.1 3100557 3101393 R PFAM: tRNA isopentenyltransferase; tRNA isopentenyltransferase complement(3100557..3101393) Acidiphilium cryptum JF-5 5161729 YP_001235944.1 CDS Acry_2835 NC_009484.1 3101407 3102405 D TIGRFAM: phosphoserine phosphatase SerB; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; phosphoserine phosphatase SerB 3101407..3102405 Acidiphilium cryptum JF-5 5161730 YP_001235945.1 CDS Acry_2836 NC_009484.1 3102395 3102862 R PFAM: CoA-binding domain protein; CoA-binding domain-containing protein complement(3102395..3102862) Acidiphilium cryptum JF-5 5161282 YP_001235946.1 CDS Acry_2837 NC_009484.1 3102868 3104457 D PFAM: glycoside hydrolase, family 17; glycoside hydrolase family protein 3102868..3104457 Acidiphilium cryptum JF-5 5162222 YP_001235947.1 CDS Acry_2838 NC_009484.1 3104472 3105833 R PFAM: peptidase S11, D-alanyl-D-alanine carboxypeptidase 1; Serine-type D-Ala-D-Ala carboxypeptidase complement(3104472..3105833) Acidiphilium cryptum JF-5 5162223 YP_001235948.1 CDS Acry_2839 NC_009484.1 3106195 3106728 D TIGRFAM: phasin family protein; phasin family protein 3106195..3106728 Acidiphilium cryptum JF-5 5160570 YP_001235949.1 CDS Acry_2840 NC_009484.1 3106762 3107205 D PFAM: ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 3106762..3107205 Acidiphilium cryptum JF-5 5160582 YP_001235950.1 CDS Acry_2841 NC_009484.1 3107184 3107702 D PFAM: GCN5-related N-acetyltransferase; N-acetyltransferase GCN5 3107184..3107702 Acidiphilium cryptum JF-5 5160583 YP_001235951.1 CDS Acry_2842 NC_009484.1 3107866 3108072 D PFAM: Cold-shock protein, DNA-binding; Ribonuclease B, OB region N-terminal domain; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 3107866..3108072 Acidiphilium cryptum JF-5 5162335 YP_001235952.1 CDS Acry_2843 NC_009484.1 3108131 3108775 R hypothetical protein complement(3108131..3108775) Acidiphilium cryptum JF-5 5161366 YP_001235953.1 CDS Acry_2844 NC_009484.1 3108849 3110084 R involved in translesion DNA polymerization with beta clamp of polymerase III; belongs to Y family of polymerases; does not contain proofreading function; DNA polymerase IV complement(3108849..3110084) Acidiphilium cryptum JF-5 5161367 YP_001235954.1 CDS Acry_2845 NC_009484.1 3110136 3111062 R sterol desaturase-like protein complement(3110136..3111062) Acidiphilium cryptum JF-5 5161471 YP_001235955.1 CDS Acry_2846 NC_009484.1 3111065 3112066 R TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; YVTN beta-propeller repeat-containing protein complement(3111065..3112066) Acidiphilium cryptum JF-5 5162523 YP_001235956.1 CDS Acry_2847 NC_009484.1 3112063 3113358 R PFAM: O-antigen polymerase; O-antigen polymerase complement(3112063..3113358) Acidiphilium cryptum JF-5 5162524 YP_001235957.1 CDS Acry_2848 NC_009484.1 3113385 3113960 R PFAM: Methyltransferase type 11; Methyltransferase type 12; type 11 methyltransferase complement(3113385..3113960) Acidiphilium cryptum JF-5 5159757 YP_001235958.1 CDS Acry_2849 NC_009484.1 3114001 3114765 D PFAM: alpha/beta hydrolase fold; PGAP1 family protein; alpha/beta hydrolase fold protein 3114001..3114765 Acidiphilium cryptum JF-5 5159546 YP_001235959.1 CDS Acry_2850 NC_009484.1 3114778 3115191 R PFAM: protein of unknown function DUF55; hypothetical protein complement(3114778..3115191) Acidiphilium cryptum JF-5 5159547 YP_001235960.1 CDS Acry_2851 NC_009484.1 3115188 3115481 R PFAM: YCII-related; hypothetical protein complement(3115188..3115481) Acidiphilium cryptum JF-5 5159723 YP_001235961.1 CDS Acry_2852 NC_009484.1 3115621 3116433 D TIGRFAM: heme exporter protein CcmC; PFAM: cytochrome c assembly protein; heme exporter protein CcmC 3115621..3116433 Acidiphilium cryptum JF-5 5159724 YP_001235962.1 CDS Acry_2853 NC_009484.1 3116599 3117120 D CycJ; periplasmic heme chaperone that binds heme transiently via a histidine residue and delivers it to newly synthesized and exported c-type cytochromes; requires the ATP hydrolysis activity of the CcmA protein in order to transfer the heme to the apocytochrome; part of the cytochrome c maturation system; periplasmic protein anchored to the inner membrane; cytochrome c-type biogenesis protein CcmE 3116599..3117120 Acidiphilium cryptum JF-5 5160196 YP_001235963.1 CDS Acry_2854 NC_009484.1 3117142 3119115 D PFAM: cytochrome c assembly protein; cytochrome c assembly protein 3117142..3119115 Acidiphilium cryptum JF-5 5159522 YP_001235964.1 CDS Acry_2855 NC_009484.1 3119125 3119679 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; Thioredoxin domain; alkyl hydroperoxide reductase 3119125..3119679 Acidiphilium cryptum JF-5 5159523 YP_001235965.1 CDS Acry_2856 NC_009484.1 3119676 3120167 D PFAM: cytochrome C biogenesis protein; cytochrome C biogenesis protein 3119676..3120167 Acidiphilium cryptum JF-5 5161004 YP_001235966.1 CDS Acry_2857 NC_009484.1 3120164 3120940 D cytochrome c biogenesis factor-like protein 3120164..3120940 Acidiphilium cryptum JF-5 5161005 YP_001235967.1 CDS Acry_2858 NC_009484.1 3120937 3121113 D PFAM: protein of unknown function DUF1674; hypothetical protein 3120937..3121113 Acidiphilium cryptum JF-5 5159775 YP_001235968.1 CDS Acry_2859 NC_009484.1 3121149 3122969 R PFAM: Cl- channel, voltage-gated family protein; Cl- channel voltage-gated family protein complement(3121149..3122969) Acidiphilium cryptum JF-5 5161395 YP_001235969.1 CDS Acry_2860 NC_009484.1 3123145 3124671 R thiamine-pyrophosphate requiring enzyme; hypothetical protein complement(3123145..3124671) Acidiphilium cryptum JF-5 5161396 YP_001235970.1 CDS Acry_2861 NC_009484.1 3124753 3125736 R hypothetical protein complement(3124753..3125736) Acidiphilium cryptum JF-5 5160591 YP_001235971.1 CDS Acry_2862 NC_009484.1 3125765 3126376 R PFAM: OmpA/MotB domain protein; OmpA/MotB domain-containing protein complement(3125765..3126376) Acidiphilium cryptum JF-5 5160592 YP_001235972.1 CDS Acry_2863 NC_009484.1 3126492 3128921 R TIGRFAM: ATP-dependent helicase HrpB; PFAM: helicase domain protein; helicase-associated domain protein; Helicase ATP-dependent, C-terminal domain protein; SMART: DEAD-like helicases-like; ATP-dependent helicase HrpB complement(3126492..3128921) Acidiphilium cryptum JF-5 5160014 YP_001235973.1 CDS Acry_2864 NC_009484.1 3128969 3130996 D PFAM: cytochrome c biogenesis protein, transmembrane region; cytochrome c biogenesis protein, transmembrane region 3128969..3130996 Acidiphilium cryptum JF-5 5160060 YP_001235974.1 CDS Acry_2865 NC_009484.1 3131530 3132153 D PFAM: cytochrome c, class I; cytochrome c, class I 3131530..3132153 Acidiphilium cryptum JF-5 5160061 YP_001235975.1 CDS Acry_2866 NC_009484.1 3132175 3133416 R branched-chain amino acid ABC transporter periplasmic component-like protein complement(3132175..3133416) Acidiphilium cryptum JF-5 5162303 YP_001235976.1 CDS Acry_2867 NC_009484.1 3133504 3134505 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 3133504..3134505 Acidiphilium cryptum JF-5 5162304 YP_001235977.1 CDS Acry_2868 NC_009484.1 3134794 3136068 D hypothetical protein 3134794..3136068 Acidiphilium cryptum JF-5 5161976 YP_001235978.1 CDS Acry_2869 NC_009484.1 3136211 3136996 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(3136211..3136996) Acidiphilium cryptum JF-5 5161006 YP_001235979.1 CDS Acry_2870 NC_009484.1 3136993 3137775 R PFAM: protein of unknown function DUF140; hypothetical protein complement(3136993..3137775) Acidiphilium cryptum JF-5 5161007 YP_001235980.1 CDS Acry_2871 NC_009484.1 3137784 3138857 R TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase complement(3137784..3138857) Acidiphilium cryptum JF-5 5159502 YP_001235981.1 CDS Acry_2872 NC_009484.1 3138854 3139663 R hypothetical protein complement(3138854..3139663) Acidiphilium cryptum JF-5 5159503 YP_001235982.1 CDS Acry_2873 NC_009484.1 3139693 3141177 R unwinds double stranded DNA; replicative DNA helicase complement(3139693..3141177) Acidiphilium cryptum JF-5 5160018 YP_001235983.1 CDS Acry_2874 NC_009484.1 3141575 3142273 D hypothetical protein 3141575..3142273 Acidiphilium cryptum JF-5 5159683 YP_001235984.1 CDS Acry_2875 NC_009484.1 3142354 3142797 D hypothetical protein 3142354..3142797 Acidiphilium cryptum JF-5 5159684 YP_001235985.1 CDS Acry_2876 NC_009484.1 3142787 3143218 R PFAM: RbsD or FucU transport; transport protein RbsD/FucU complement(3142787..3143218) Acidiphilium cryptum JF-5 5159599 YP_001235986.1 CDS Acry_2877 NC_009484.1 3143229 3144131 R PFAM: PfkB domain protein; ribokinase-like domain-containing protein complement(3143229..3144131) Acidiphilium cryptum JF-5 5159600 YP_001235987.1 CDS Acry_2878 NC_009484.1 3144260 3145579 R TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; ammonium transporter complement(3144260..3145579) Acidiphilium cryptum JF-5 5159685 YP_001235988.1 CDS Acry_2879 NC_009484.1 3145888 3146334 D hypothetical protein 3145888..3146334 Acidiphilium cryptum JF-5 5159612 YP_001235989.1 CDS Acry_2880 NC_009484.1 3146353 3146790 R PFAM: CBS domain containing protein; signal-transduction protein complement(3146353..3146790) Acidiphilium cryptum JF-5 5159613 YP_001235990.1 CDS Acry_2881 NC_009484.1 3146893 3147789 R TIGRFAM: pyridoxal kinase; PFAM: Phosphomethylpyrimidine kinase type-1; pyridoxal kinase complement(3146893..3147789) Acidiphilium cryptum JF-5 5159655 YP_001235991.1 CDS Acry_2882 NC_009484.1 3147853 3148935 D PFAM: NADH:flavin oxidoreductase/NADH oxidase; NADH:flavin oxidoreductase 3147853..3148935 Acidiphilium cryptum JF-5 5159656 YP_001235992.1 CDS Acry_2883 NC_009484.1 3149085 3149780 D Represses a number of genes involved in the response to DNA damage; LexA repressor 3149085..3149780 Acidiphilium cryptum JF-5 5160064 YP_001235993.1 CDS Acry_2884 NC_009484.1 3149834 3150604 D PFAM: heat shock protein DnaJ domain protein; heat shock protein DnaJ domain-containing protein 3149834..3150604 Acidiphilium cryptum JF-5 5160153 YP_001235994.1 CDS Acry_2885 NC_009484.1 3150601 3151263 D PFAM: Peptidoglycan-binding domain 1 protein; N-acetylmuramoyl-L-alanine amidase, family 2; N-acetylmuramoyl-L-alanine amidase 3150601..3151263 Acidiphilium cryptum JF-5 5160154 YP_001235995.1 CDS Acry_2886 NC_009484.1 3151795 3154233 D TIGRFAM: DNA gyrase, B subunit; PFAM: DNA gyrase, subunit B domain protein; ATP-binding region, ATPase domain protein; TOPRIM domain protein; DNA topoisomerase, type IIA, subunit B, region 2 domain protein; SMART: DNA topoisomerase II; DNA gyrase subunit B 3151795..3154233 Acidiphilium cryptum JF-5 5161978 YP_001235996.1 CDS Acry_2887 NC_009484.1 3154485 3154781 R hypothetical protein complement(3154485..3154781) Acidiphilium cryptum JF-5 5159701 YP_001235997.1 CDS Acry_2888 NC_009484.1 3154759 3155658 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(3154759..3155658) Acidiphilium cryptum JF-5 5160201 YP_001235998.1 CDS Acry_2889 NC_009484.1 3155723 3156664 D PFAM: Auxin Efflux Carrier; auxin efflux carrier 3155723..3156664 Acidiphilium cryptum JF-5 5159981 YP_001235999.1 CDS Acry_2890 NC_009484.1 3156877 3160086 D TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 3156877..3160086 Acidiphilium cryptum JF-5 5159982 YP_001236000.1 CDS Acry_2891 NC_009484.1 3160265 3160537 D hypothetical protein 3160265..3160537 Acidiphilium cryptum JF-5 5159484 YP_001236001.1 CDS Acry_2892 NC_009484.1 3160589 3161014 R PFAM: glutathione-dependent formaldehyde-activating, GFA; glutathione-dependent formaldehyde-activating protein complement(3160589..3161014) Acidiphilium cryptum JF-5 5159485 YP_001236002.1 CDS Acry_2893 NC_009484.1 3161096 3162214 D hypothetical protein 3161096..3162214 Acidiphilium cryptum JF-5 5159964 YP_001236003.1 CDS Acry_2894 NC_009484.1 3162192 3162587 R PFAM: helix-turn-helix domain protein; XRE family transcriptional regulator complement(3162192..3162587) Acidiphilium cryptum JF-5 5159882 YP_001236004.1 CDS Acry_2895 NC_009484.1 3162598 3163146 R PFAM: Smr protein/MutS2; Smr protein/MutS2 complement(3162598..3163146) Acidiphilium cryptum JF-5 5159883 YP_001236005.1 CDS Acry_2896 NC_009484.1 3163130 3163834 R PFAM: protein of unknown function DUF162; hypothetical protein complement(3163130..3163834) Acidiphilium cryptum JF-5 5159782 YP_001236006.1 CDS Acry_2897 NC_009484.1 3163831 3165252 R PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; protein of unknown function DUF162; hypothetical protein complement(3163831..3165252) Acidiphilium cryptum JF-5 5159783 YP_001236007.1 CDS Acry_2898 NC_009484.1 3165426 3166535 D PFAM: Lytic transglycosylase, catalytic; lytic transglycosylase 3165426..3166535 Acidiphilium cryptum JF-5 5159472 YP_001236008.1 CDS Acry_2899 NC_009484.1 3166652 3168061 R PFAM: TolB, N-terminal domain protein; WD40 domain protein beta Propeller; TolB domain-containing protein complement(3166652..3168061) Acidiphilium cryptum JF-5 5159716 YP_001236009.1 CDS Acry_2900 NC_009484.1 3168093 3169055 R hypothetical protein complement(3168093..3169055) Acidiphilium cryptum JF-5 5159717 YP_001236010.1 CDS Acry_2901 NC_009484.1 3169109 3169552 R PFAM: Biopolymer transport protein ExbD/TolR; biopolymer transport protein ExbD/TolR complement(3169109..3169552) Acidiphilium cryptum JF-5 5160125 YP_001236011.1 CDS Acry_2902 NC_009484.1 3169555 3170271 R PFAM: MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel complement(3169555..3170271) Acidiphilium cryptum JF-5 5160126 YP_001236012.1 CDS Acry_2903 NC_009484.1 3170274 3170774 R PFAM: thioesterase superfamily protein; thioesterase superfamily protein complement(3170274..3170774) Acidiphilium cryptum JF-5 5159703 YP_001236013.1 CDS ruvB NC_009484.1 3170771 3171814 R promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA during branch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms; requires ATP for branch migration and orientation of RuvAB complex determines direction of migration; Holliday junction DNA helicase RuvB complement(3170771..3171814) Acidiphilium cryptum JF-5 5159952 YP_001236014.1 CDS ruvA NC_009484.1 3171811 3172425 R plays an essential role in ATP-dependent branch migration of the Holliday junction; Holliday junction DNA helicase RuvA complement(3171811..3172425) Acidiphilium cryptum JF-5 5159953 YP_001236015.1 CDS ruvC NC_009484.1 3172422 3172925 R endonuclease; resolves Holliday structures; forms a complex of RuvABC; the junction binding protein RuvA forms a hexameric ring along with the RuvB helicase and catalyzes branch migration; RuvC then interacts with RuvAB to resolve the Holliday junction by nicking DNA strands of like polarity; Holliday junction resolvase complement(3172422..3172925) Acidiphilium cryptum JF-5 5160606 YP_001236016.1 CDS Acry_2907 NC_009484.1 3172964 3173725 R PFAM: protein of unknown function DUF28; hypothetical protein complement(3172964..3173725) Acidiphilium cryptum JF-5 5160607 YP_001236017.1 CDS Acry_2908 NC_009484.1 3173851 3175056 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 3173851..3175056 Acidiphilium cryptum JF-5 5160120 YP_001236018.1 CDS Acry_2909 NC_009484.1 3175053 3176141 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 3175053..3176141 Acidiphilium cryptum JF-5 5159704 YP_001236019.1 CDS Acry_2910 NC_009484.1 3176099 3177316 R PFAM: major facilitator superfamily MFS_1; major facilitator transporter complement(3176099..3177316) Acidiphilium cryptum JF-5 5159705 YP_001236020.1 CDS Acry_2911 NC_009484.1 3178082 3178534 D hypothetical protein 3178082..3178534 Acidiphilium cryptum JF-5 5161026 YP_001236021.1 CDS Acry_2912 NC_009484.1 3178531 3179094 D PFAM: phosphonate metabolism; phosphonate metabolism protein 3178531..3179094 Acidiphilium cryptum JF-5 5159494 YP_001236022.1 CDS Acry_2913 NC_009484.1 3179096 3180178 D PFAM: phosphonate metabolism; phosphonate metabolism protein 3179096..3180178 Acidiphilium cryptum JF-5 5159977 YP_001236023.1 CDS Acry_2914 NC_009484.1 3180165 3180998 D PFAM: phosphonate metabolism PhnJ; phosphonate metabolism PhnJ 3180165..3180998 Acidiphilium cryptum JF-5 5159626 YP_001236024.1 CDS phnK NC_009484.1 3180995 3181759 D TIGRFAM: phosphonate C-P lyase system protein PhnK; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnK 3180995..3181759 Acidiphilium cryptum JF-5 5159627 YP_001236025.1 CDS Acry_2916 NC_009484.1 3181756 3182451 D TIGRFAM: phosphonate C-P lyase system protein PhnL; PFAM: ABC transporter related; SMART: AAA ATPase; phosphonate C-P lyase system protein PhnL 3181756..3182451 Acidiphilium cryptum JF-5 5159537 YP_001236026.1 CDS Acry_2917 NC_009484.1 3182448 3183569 D TIGRFAM: phosphonate metabolism protein PhnM; PFAM: amidohydrolase; Amidohydrolase 3; phosphonate metabolism protein PhnM 3182448..3183569 Acidiphilium cryptum JF-5 5159538 YP_001236027.1 CDS Acry_2918 NC_009484.1 3183562 3184227 D PFAM: protein of unknown function DUF1045; hypothetical protein 3183562..3184227 Acidiphilium cryptum JF-5 5159776 YP_001236028.1 CDS Acry_2919 NC_009484.1 3184227 3184772 D TIGRFAM: phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN; SMART: guanylate kinase/L-type calcium channel region; phosphonate metabolism protein/1,5-bisphosphokinase PhnN 3184227..3184772 Acidiphilium cryptum JF-5 5160613 YP_001236029.1 CDS Acry_2920 NC_009484.1 3184833 3185570 R TIGRFAM: phosphonates metabolism transcriptional regulator PhnF; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; GntR family transcriptional regulator complement(3184833..3185570) Acidiphilium cryptum JF-5 5160614 YP_001236030.1 CDS Acry_2921 NC_009484.1 3185629 3188271 R PFAM: glycosyl transferase, family 2; glycosyl transferase family protein complement(3185629..3188271) Acidiphilium cryptum JF-5 5160019 YP_001236031.1 CDS rpmI NC_009484.1 3188536 3188739 D PFAM: ribosomal protein L35; 50S ribosomal protein L35 3188536..3188739 Acidiphilium cryptum JF-5 5160020 YP_001236032.1 CDS rplT NC_009484.1 3188753 3189109 D binds directly to 23S ribosomal RNA prior to in vitro assembly of the 50S ribosomal subunit; 50S ribosomal protein L20 3188753..3189109 Acidiphilium cryptum JF-5 5159601 YP_001236033.1 CDS Acry_2924 NC_009484.1 3189114 3190166 R PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase complement(3189114..3190166) Acidiphilium cryptum JF-5 5160095 YP_001236034.1 CDS Acry_2925 NC_009484.1 3190150 3190977 R PFAM: metallophosphoesterase; metallophosphoesterase complement(3190150..3190977) Acidiphilium cryptum JF-5 5160096 YP_001236035.1 CDS Acry_2926 NC_009484.1 3191086 3191511 R PFAM: protein of unknown function DUF1486; hypothetical protein complement(3191086..3191511) Acidiphilium cryptum JF-5 5159993 YP_001236036.1 CDS Acry_2927 NC_009484.1 3191627 3192631 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; alcohol dehydrogenase 3191627..3192631 Acidiphilium cryptum JF-5 5159994 YP_001236037.1 CDS Acry_2928 NC_009484.1 3192791 3193549 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3192791..3193549 Acidiphilium cryptum JF-5 5160040 YP_001236038.1 CDS Acry_2929 NC_009484.1 3193542 3194234 D PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein 3193542..3194234 Acidiphilium cryptum JF-5 5159568 YP_001236039.1 CDS Acry_2930 NC_009484.1 3194256 3195491 D ABC-type branched-chain amino acid transport systems periplasmic component-like protein 3194256..3195491 Acidiphilium cryptum JF-5 5159569 YP_001236040.1 CDS Acry_2931 NC_009484.1 3195522 3196409 D PFAM: inner-membrane translocator; inner-membrane translocator 3195522..3196409 Acidiphilium cryptum JF-5 5159802 YP_001236041.1 CDS Acry_2932 NC_009484.1 3196409 3197344 D PFAM: inner-membrane translocator; inner-membrane translocator 3196409..3197344 Acidiphilium cryptum JF-5 5159803 YP_001236042.1 CDS Acry_2933 NC_009484.1 3197351 3198832 D PFAM: Amidase; amidase 3197351..3198832 Acidiphilium cryptum JF-5 5159812 YP_001236043.1 CDS Acry_2934 NC_009484.1 3198985 3202053 D PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; alpha amylase 3198985..3202053 Acidiphilium cryptum JF-5 5160292 YP_001236044.1 CDS Acry_2935 NC_009484.1 3202050 3205382 D TIGRFAM: trehalose synthase; trehalose synthase-fused possible maltokinase; PFAM: alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; trehalose synthase 3202050..3205382 Acidiphilium cryptum JF-5 5160293 YP_001236045.1 CDS Acry_2936 NC_009484.1 3205366 3207531 D TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; alpha amylase, C-terminal all-beta; SMART: alpha amylase, catalytic sub domain; 1,4-alpha-glucan-branching protein 3205366..3207531 Acidiphilium cryptum JF-5 5160180 YP_001236046.1 CDS Acry_2937 NC_009484.1 3207531 3209642 D TIGRFAM: glycogen debranching enzyme GlgX; PFAM: glycoside hydrolase, family 13 domain protein; alpha amylase, catalytic region; SMART: alpha amylase, catalytic sub domain; glycogen debranching protein GlgX 3207531..3209642 Acidiphilium cryptum JF-5 5160181 YP_001236047.1 CDS Acry_2938 NC_009484.1 3209639 3211633 D TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase, family 77; 4-alpha-glucanotransferase 3209639..3211633 Acidiphilium cryptum JF-5 5160316 YP_001236048.1 CDS Acry_2939 NC_009484.1 3211662 3213350 R hypothetical protein complement(3211662..3213350) Acidiphilium cryptum JF-5 5160158 YP_001236049.1 CDS Acry_2940 NC_009484.1 3213376 3214332 R PFAM: glycosyl transferase, family 2; glycosyl transferase family protein complement(3213376..3214332) Acidiphilium cryptum JF-5 5160159 YP_001236050.1 CDS Acry_2941 NC_009484.1 3214565 3218296 R PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase complement(3214565..3218296) Acidiphilium cryptum JF-5 5160272 YP_001236051.1 CDS Acry_2942 NC_009484.1 3218327 3219760 R TIGRFAM: methyltransferase FkbM family; FkbM family methyltransferase complement(3218327..3219760) Acidiphilium cryptum JF-5 5160273 YP_001236052.1 CDS Acry_2943 NC_009484.1 3220249 3222228 R hypothetical protein complement(3220249..3222228) Acidiphilium cryptum JF-5 5160588 YP_001236053.1 CDS Acry_2944 NC_009484.1 3222236 3223159 R catalyzes the conversion of the propionic acid groups of rings I and III to vinyl groups during heme synthesis; coproporphyrinogen III oxidase complement(3222236..3223159) Acidiphilium cryptum JF-5 5160182 YP_001236054.1 CDS Acry_2945 NC_009484.1 3223473 3224660 D PFAM: Cytochrome b/b6, N-terminal domain; cytochrome b/b6 domain-containing protein 3223473..3224660 Acidiphilium cryptum JF-5 5160183 YP_001236055.1 CDS Acry_2946 NC_009484.1 3224660 3225391 D PFAM: cytochrome c1; cytochrome c1 3224660..3225391 Acidiphilium cryptum JF-5 5160396 YP_001236056.1 CDS Acry_2947 NC_009484.1 3225388 3226281 D Catalyzes the reversible phosphorolysis of 5'-deoxy-5'- methylthioadenosine (MTA) to adenine and 5-methylthio-D-ribose-1- phosphate; 5'-methylthioadenosine phosphorylase 3225388..3226281 Acidiphilium cryptum JF-5 5160397 YP_001236057.1 CDS Acry_2948 NC_009484.1 3226425 3227072 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; peroxidase 3226425..3227072 Acidiphilium cryptum JF-5 5160294 YP_001236058.1 CDS pstB NC_009484.1 3227216 3228019 D ATP-binding protein; PstABCS is an ATP dependent phosphate uptake system which is responsible for inorganic phosphate uptake during phosphate starvation; phosphate transporter ATP-binding protein 3227216..3228019 Acidiphilium cryptum JF-5 5160596 YP_001236059.1 CDS Acry_2950 NC_009484.1 3228031 3228750 D TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; phosphate uptake regulator PhoU 3228031..3228750 Acidiphilium cryptum JF-5 5160597 YP_001236060.1 CDS Acry_2951 NC_009484.1 3228765 3229475 D TIGRFAM: phosphate regulon transcriptional regulatory protein PhoB; PFAM: response regulator receiver; transcriptional regulator domain protein; two component transcriptional regulator 3228765..3229475 Acidiphilium cryptum JF-5 5159610 YP_001236061.1 CDS Acry_2952 NC_009484.1 3229605 3229811 D hypothetical protein 3229605..3229811 Acidiphilium cryptum JF-5 5159611 YP_001236062.1 CDS Acry_2953 NC_009484.1 3229808 3231268 D PFAM: Na+/solute symporter; Na+/solute symporter 3229808..3231268 Acidiphilium cryptum JF-5 5159745 YP_001236063.1 CDS Acry_2954 NC_009484.1 3231325 3232062 D PFAM: protein of unknown function DUF1275; hypothetical protein 3231325..3232062 Acidiphilium cryptum JF-5 5160619 YP_001236064.1 CDS Acry_2955 NC_009484.1 3232158 3232727 D hypothetical protein 3232158..3232727 Acidiphilium cryptum JF-5 5160620 YP_001236065.1 CDS Acry_2956 NC_009484.1 3233137 3233865 D PFAM: sugar transferase; sugar transferase 3233137..3233865 Acidiphilium cryptum JF-5 5160269 YP_001236066.1 CDS Acry_2957 NC_009484.1 3233846 3235939 D TIGRFAM: histidine kinase; PFAM: ATP-binding region, ATPase domain protein; histidine kinase A domain protein; integral membrane sensor signal transduction histidine kinase 3233846..3235939 Acidiphilium cryptum JF-5 5160270 YP_001236067.1 CDS Acry_2958 NC_009484.1 3235932 3237350 D PFAM: response regulator receiver; sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; SMART: AAA ATPase; two component sigma54 specific Fis family transcriptional regulator 3235932..3237350 Acidiphilium cryptum JF-5 5160312 YP_001236068.1 CDS Acry_2959 NC_009484.1 3237413 3240232 D PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; hypothetical protein 3237413..3240232 Acidiphilium cryptum JF-5 5159555 YP_001236069.1 CDS Acry_2960 NC_009484.1 3240242 3241552 D PFAM: O-antigen polymerase; O-antigen polymerase 3240242..3241552 Acidiphilium cryptum JF-5 5159556 YP_001236070.1 CDS Acry_2961 NC_009484.1 3241549 3241761 D hypothetical protein 3241549..3241761 Acidiphilium cryptum JF-5 5160329 YP_001236071.1 CDS Acry_2962 NC_009484.1 3241761 3242990 D PFAM: glycosyl transferase, group 1; group 1 glycosyl transferase 3241761..3242990 Acidiphilium cryptum JF-5 5160330 YP_001236072.1 CDS Acry_2963 NC_009484.1 3243529 3244170 D PFAM: polysaccharide export protein; polysaccharide export protein 3243529..3244170 Acidiphilium cryptum JF-5 5160661 YP_001236073.1 CDS Acry_2964 NC_009484.1 3244178 3245659 D PFAM: lipopolysaccharide biosynthesis protein; lipopolysaccharide biosynthesis protein 3244178..3245659 Acidiphilium cryptum JF-5 5159819 YP_001236074.1 CDS Acry_2965 NC_009484.1 3245656 3246585 D chromosome partitioning ATPase 3245656..3246585 Acidiphilium cryptum JF-5 5159820 YP_001236075.1 CDS Acry_2966 NC_009484.1 3246629 3248314 D hypothetical protein 3246629..3248314 Acidiphilium cryptum JF-5 5160310 YP_001236076.1 CDS Acry_2967 NC_009484.1 3248317 3249243 D SMART: AAA ATPase; ATPase AAA 3248317..3249243 Acidiphilium cryptum JF-5 5160311 YP_001236077.1 CDS Acry_2968 NC_009484.1 3249240 3250094 D PFAM: polysaccharide deacetylase; polysaccharide deacetylase 3249240..3250094 Acidiphilium cryptum JF-5 5160325 YP_001236078.1 CDS Acry_2969 NC_009484.1 3250096 3251136 D hypothetical protein 3250096..3251136 Acidiphilium cryptum JF-5 5160366 YP_001236079.1 CDS Acry_2970 NC_009484.1 3251143 3252327 D glycosyltransferase-like protein 3251143..3252327 Acidiphilium cryptum JF-5 5160367 YP_001236080.1 CDS Acry_2971 NC_009484.1 3252324 3253781 D TIGRFAM: eight transmembrane protein EpsH; eight transmembrane protein EpsH 3252324..3253781 Acidiphilium cryptum JF-5 5160443 YP_001236081.1 CDS Acry_2972 NC_009484.1 3253900 3254274 D hypothetical protein 3253900..3254274 Acidiphilium cryptum JF-5 5160444 YP_001236082.1 CDS Acry_2973 NC_009484.1 3254420 3254782 D hypothetical protein 3254420..3254782 Acidiphilium cryptum JF-5 5160456 YP_001236083.1 CDS Acry_2974 NC_009484.1 3255158 3255616 D PFAM: Cupin 2, conserved barrel domain protein; cupin 3255158..3255616 Acidiphilium cryptum JF-5 5160383 YP_001236084.1 CDS Acry_2975 NC_009484.1 3255765 3257648 D PFAM: sigma-54 factor, interaction domain-containing protein; helix-turn-helix, Fis-type; GAF domain protein; SMART: AAA ATPase; Fis family GAF modulated sigma54 specific transcriptional regulator 3255765..3257648 Acidiphilium cryptum JF-5 5160384 YP_001236085.1 CDS Acry_2976 NC_009484.1 3257787 3258863 D PFAM: Alcohol dehydrogenase, zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase 3257787..3258863 Acidiphilium cryptum JF-5 5160358 YP_001236086.1 CDS Acry_2977 NC_009484.1 3258897 3260720 D flavoprotein involved in K+ transport-like protein 3258897..3260720 Acidiphilium cryptum JF-5 5160359 YP_001236087.1 CDS Acry_2978 NC_009484.1 3260876 3261472 R PFAM: TadE family protein; TadE family protein complement(3260876..3261472) Acidiphilium cryptum JF-5 5160502 YP_001236088.1 CDS Acry_2979 NC_009484.1 3261459 3262016 R PFAM: TadE family protein; TadE family protein complement(3261459..3262016) Acidiphilium cryptum JF-5 5160332 YP_001236089.1 CDS Acry_2980 NC_009484.1 3262029 3263324 R hypothetical protein complement(3262029..3263324) Acidiphilium cryptum JF-5 5160333 YP_001236090.1 CDS Acry_2981 NC_009484.1 3263412 3263726 R TIGRFAM: L-rhamnose 1-epimerase; PFAM: protein of unknown function DUF718; L-rhamnose 1-epimerase complement(3263412..3263726) Acidiphilium cryptum JF-5 5160682 YP_001236091.1 CDS Acry_2982 NC_009484.1 3263746 3264717 R PFAM: inner-membrane translocator; monosaccharide-transporting ATPase complement(3263746..3264717) Acidiphilium cryptum JF-5 5160683 YP_001236092.1 CDS Acry_2983 NC_009484.1 3264717 3265775 R PFAM: inner-membrane translocator; monosaccharide-transporting ATPase complement(3264717..3265775) Acidiphilium cryptum JF-5 5159754 YP_001236093.1 CDS Acry_2984 NC_009484.1 3265795 3267324 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(3265795..3267324) Acidiphilium cryptum JF-5 5160515 YP_001236094.1 CDS Acry_2985 NC_009484.1 3267332 3268342 R ABC-type sugar transport system periplasmic component-like protein complement(3267332..3268342) Acidiphilium cryptum JF-5 5160516 YP_001236095.1 CDS Acry_2986 NC_009484.1 3268594 3269376 D PFAM: regulatory protein, DeoR; DeoR family transcriptional regulator 3268594..3269376 Acidiphilium cryptum JF-5 5160693 YP_001236096.1 CDS Acry_2987 NC_009484.1 3269403 3270587 D TIGRFAM: L-rhamnose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; L-rhamnose isomerase 3269403..3270587 Acidiphilium cryptum JF-5 5160694 YP_001236097.1 CDS Acry_2988 NC_009484.1 3270599 3272701 D TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; short-chain dehydrogenase/reductase SDR; KR; short chain dehydrogenase 3270599..3272701 Acidiphilium cryptum JF-5 5160507 YP_001236098.1 CDS Acry_2989 NC_009484.1 3272691 3274112 D PFAM: carbohydrate kinase, FGGY; carbohydrate kinase 3272691..3274112 Acidiphilium cryptum JF-5 5160370 YP_001236099.1 CDS Acry_2990 NC_009484.1 3274128 3276023 R PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; Cache, type 2 domain protein; methyl-accepting chemotaxis sensory transducer complement(3274128..3276023) Acidiphilium cryptum JF-5 5160371 YP_001236100.1 CDS Acry_2991 NC_009484.1 3276180 3276740 D PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; cold-shock DNA-binding domain-containing protein 3276180..3276740 Acidiphilium cryptum JF-5 5160758 YP_001236101.1 CDS Acry_2992 NC_009484.1 3276800 3277720 D PFAM: heat shock protein DnaJ domain protein; chaperone DnaJ domain protein; chaperone DnaJ domain-containing protein 3276800..3277720 Acidiphilium cryptum JF-5 5160759 YP_001236102.1 CDS Acry_2993 NC_009484.1 3277717 3278067 D hypothetical protein 3277717..3278067 Acidiphilium cryptum JF-5 5160508 YP_001236103.1 CDS Acry_2994 NC_009484.1 3278043 3278762 R PFAM: oxidoreductase, molybdopterin binding; molybdopterin binding oxidoreductase complement(3278043..3278762) Acidiphilium cryptum JF-5 5160724 YP_001236104.1 CDS Acry_2995 NC_009484.1 3278768 3279400 R thiosulfate reductase cytochrome B subunit (membrane anchoring protein)-like protein complement(3278768..3279400) Acidiphilium cryptum JF-5 5160725 YP_001236105.1 CDS Acry_2996 NC_009484.1 3279595 3279837 D hypothetical protein 3279595..3279837 Acidiphilium cryptum JF-5 5160255 YP_001236106.1 CDS Acry_2997 NC_009484.1 3279973 3280629 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; alkyl hydroperoxide reductase 3279973..3280629 Acidiphilium cryptum JF-5 5160256 YP_001236107.1 CDS Acry_2998 NC_009484.1 3280635 3281504 D PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator 3280635..3281504 Acidiphilium cryptum JF-5 5160713 YP_001236108.1 CDS Acry_2999 NC_009484.1 3281589 3282179 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; uncharacterized peroxidase-related enzyme; PFAM: Carboxymuconolactone decarboxylase; peroxidase-like protein 3281589..3282179 Acidiphilium cryptum JF-5 5160463 YP_001236109.1 CDS Acry_3000 NC_009484.1 3282184 3283254 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; ABC transporter-like protein complement(3282184..3283254) Acidiphilium cryptum JF-5 5160464 YP_001236110.1 CDS Acry_3001 NC_009484.1 3283254 3284090 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component complement(3283254..3284090) Acidiphilium cryptum JF-5 5160729 YP_001236111.1 CDS Acry_3002 NC_009484.1 3284087 3284965 R PFAM: binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport system inner membrane protein complement(3284087..3284965) Acidiphilium cryptum JF-5 5160730 YP_001236112.1 CDS Acry_3003 NC_009484.1 3284978 3286306 R PFAM: extracellular solute-binding protein, family 1; extracellular solute-binding protein complement(3284978..3286306) Acidiphilium cryptum JF-5 5160915 YP_001236113.1 CDS Acry_3004 NC_009484.1 3286492 3287664 D TIGRFAM: 4-carboxymuconolactone decarboxylase; 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; Carboxymuconolactone decarboxylase; Ndr family protein; 3-oxoadipate enol-lactonase 3286492..3287664 Acidiphilium cryptum JF-5 5160842 YP_001236114.1 CDS Acry_3005 NC_009484.1 3287698 3289980 R PFAM: aldehyde oxidase and xanthine dehydrogenase, molybdopterin binding; molybdopterin binding aldehyde oxidase and xanthine dehydrogenase complement(3287698..3289980) Acidiphilium cryptum JF-5 5160843 YP_001236115.1 CDS Acry_3006 NC_009484.1 3289977 3290513 R PFAM: ferredoxin; [2Fe-2S]-binding domain protein; 2Fe-2S iron-sulfur cluster binding domain-containing protein complement(3289977..3290513) Acidiphilium cryptum JF-5 5160845 YP_001236116.1 CDS Acry_3007 NC_009484.1 3290582 3291130 R PFAM: regulatory protein, MarR; MarR family transcriptional regulator complement(3290582..3291130) Acidiphilium cryptum JF-5 5160846 YP_001236117.1 CDS Acry_3008 NC_009484.1 3291377 3291886 D TIGRFAM: L-2,4-diaminobutyric acid acetyltransferase; PFAM: GCN5-related N-acetyltransferase; L-2,4-diaminobutyric acid acetyltransferase 3291377..3291886 Acidiphilium cryptum JF-5 5160726 YP_001236118.1 CDS Acry_3009 NC_009484.1 3291883 3293187 D catalyzes the reversible formation of diaminobutyrate and 2-oxoglutarate from glutamate and L-aspartic beta-semialdehyde; diaminobutyrate--2-oxoglutarate aminotransferase 3291883..3293187 Acidiphilium cryptum JF-5 5160420 YP_001236119.1 CDS ectC NC_009484.1 3293219 3293617 D N-acetyldiaminobutyrate dehydratase; catalyzes the formation of the osmoprotectant ecotoine from gamma-N-acetyl-alpha,gamma-diaminobutyric acid; L-ectoine synthase 3293219..3293617 Acidiphilium cryptum JF-5 5160421 YP_001236120.1 CDS Acry_3011 NC_009484.1 3293658 3294578 D TIGRFAM: ectoine hydroxylase; PFAM: Phytanoyl-CoA dioxygenase; ectoine hydroxylase 3293658..3294578 Acidiphilium cryptum JF-5 5160719 YP_001236121.1 CDS Acry_3012 NC_009484.1 3294575 3296041 D catalyzes the formation of 4-phospho-L-aspartate from L-aspartate and ATP; aspartate kinase 3294575..3296041 Acidiphilium cryptum JF-5 5160720 YP_001236122.1 CDS Acry_3013 NC_009484.1 3296279 3297508 D PFAM: major facilitator superfamily MFS_1; major facilitator transporter 3296279..3297508 Acidiphilium cryptum JF-5 5160765 YP_001236123.1 CDS Acry_3014 NC_009484.1 3297519 3298124 R hypothetical protein complement(3297519..3298124) Acidiphilium cryptum JF-5 5160768 YP_001236124.1 CDS Acry_3015 NC_009484.1 3298121 3299110 R PFAM: Mammalian cell entry related domain protein; hypothetical protein complement(3298121..3299110) Acidiphilium cryptum JF-5 5160769 YP_001236125.1 CDS Acry_3016 NC_009484.1 3299133 3299882 R PFAM: ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(3299133..3299882) Acidiphilium cryptum JF-5 5160308 YP_001236126.1 CDS Acry_3017 NC_009484.1 3299879 3300967 R PFAM: protein of unknown function DUF140; hypothetical protein complement(3299879..3300967) Acidiphilium cryptum JF-5 5160309 YP_001236127.1 CDS Acry_3018 NC_009484.1 3300964 3301602 R PFAM: Integral membrane protein TerC; integral membrane protein TerC complement(3300964..3301602) Acidiphilium cryptum JF-5 5160734 YP_001236128.1 CDS Acry_3019 NC_009484.1 3301674 3303011 D Catalyzes two discrete reactions in the de novo synthesis of purines: the cleavage of adenylosuccinate and succinylaminoimidazole carboxamide ribotide; adenylosuccinate lyase 3301674..3303011 Acidiphilium cryptum JF-5 5162330 YP_001236129.1 CDS Acry_3020 NC_009484.1 3303025 3303744 D PFAM: protein of unknown function DUF833; hypothetical protein 3303025..3303744 Acidiphilium cryptum JF-5 5162331 YP_001236130.1 CDS Acry_3021 NC_009484.1 3303811 3305304 R TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; methylmalonate-semialdehyde dehydrogenase complement(3303811..3305304) Acidiphilium cryptum JF-5 5160676 YP_001236131.1 CDS Acry_3022 NC_009484.1 3305334 3306662 D TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein; amidase 3305334..3306662 Acidiphilium cryptum JF-5 5160677 YP_001236132.1 CDS Acry_3023 NC_009484.1 3306754 3307359 D hypothetical protein 3306754..3307359 Acidiphilium cryptum JF-5 5160964 YP_001236133.1 CDS Acry_3024 NC_009484.1 3307433 3309235 R flavoprotein involved in K+ transport-like protein complement(3307433..3309235) Acidiphilium cryptum JF-5 5160696 YP_001236134.1 CDS Acry_3025 NC_009484.1 3309401 3309889 D hypothetical protein 3309401..3309889 Acidiphilium cryptum JF-5 5160697 YP_001236135.1 CDS Acry_3026 NC_009484.1 3309961 3310794 R hypothetical protein complement(3309961..3310794) Acidiphilium cryptum JF-5 5160717 YP_001236136.1 CDS Acry_3027 NC_009484.1 3310962 3312797 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; E1-E2 ATPase-associated domain protein; heavy metal translocating P-type ATPase complement(3310962..3312797) Acidiphilium cryptum JF-5 5160718 YP_001236137.1 CDS Acry_3028 NC_009484.1 3312958 3313215 D hypothetical protein 3312958..3313215 Acidiphilium cryptum JF-5 5160197 YP_001236138.1 CDS Acry_3029 NC_009484.1 3313220 3313996 D enoyl-(acyl-carrier-protein)-like protein 3313220..3313996 Acidiphilium cryptum JF-5 5161044 YP_001236139.1 CDS Acry_3030 NC_009484.1 3314027 3315847 D PFAM: alpha/beta hydrolase fold; Poly-beta-hydroxybutyrate polymerase domain protein; poly-beta-hydroxybutyrate polymerase domain-containing protein 3314027..3315847 Acidiphilium cryptum JF-5 5161045 YP_001236140.1 CDS Acry_3031 NC_009484.1 3315860 3317275 D PFAM: phosphate acetyl/butaryl transferase; MaoC domain protein dehydratase; bifunctional enoyl-CoA hydratase/phosphate acetyltransferase 3315860..3317275 Acidiphilium cryptum JF-5 5160927 YP_001236141.1 CDS Acry_3032 NC_009484.1 3317290 3317640 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; alkylhydroperoxidase 3317290..3317640 Acidiphilium cryptum JF-5 5160928 YP_001236142.1 CDS Acry_3033 NC_009484.1 3317713 3318216 D PFAM: peptidase A24A, prepilin type IV; peptidase A24A, prepilin type IV 3317713..3318216 Acidiphilium cryptum JF-5 5160975 YP_001236143.1 CDS Acry_3034 NC_009484.1 3318339 3319685 D PFAM: permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 3318339..3319685 Acidiphilium cryptum JF-5 5160957 YP_001236144.1 CDS Acry_3035 NC_009484.1 3319745 3319954 D hypothetical protein 3319745..3319954 Acidiphilium cryptum JF-5 5160958 YP_001236145.1 CDS Acry_3036 NC_009484.1 3319929 3320414 R hypothetical protein complement(3319929..3320414) Acidiphilium cryptum JF-5 5160967 YP_001236146.1 CDS Acry_3038 NC_009484.1 3321846 3322406 D PFAM: regulatory protein, TetR; TetR family transcriptional regulator 3321846..3322406 Acidiphilium cryptum JF-5 5162560 YP_001236147.1 CDS Acry_3039 NC_009484.1 3322394 3323173 R PFAM: class II aldolase/adducin family protein; aldolase II superfamily protein complement(3322394..3323173) Acidiphilium cryptum JF-5 5161046 YP_001236148.1 CDS Acry_3040 NC_009484.1 3323233 3323826 R S-isoprenylcysteine methyltransferase-like protein complement(3323233..3323826) Acidiphilium cryptum JF-5 5162299 YP_001236149.1 CDS Acry_3041 NC_009484.1 3323942 3325186 D PFAM: oxidoreductase, molybdopterin binding; Mo-co oxidoreductase dimerisation domain; molybdopterin binding oxidoreductase 3323942..3325186 Acidiphilium cryptum JF-5 5162300 YP_001236150.1 CDS Acry_3042 NC_009484.1 3325170 3325949 D PFAM: cytochrome c, class I; cytochrome c, class I 3325170..3325949 Acidiphilium cryptum JF-5 5161027 YP_001236151.1 CDS Acry_3043 NC_009484.1 3325960 3326304 D PFAM: cytochrome c, class I; cytochrome c, class I 3325960..3326304 Acidiphilium cryptum JF-5 5161028 YP_001236152.1 CDS Acry_3044 NC_009484.1 3326352 3326846 D secreted protein-like protein 3326352..3326846 Acidiphilium cryptum JF-5 5161029 YP_001236153.1 CDS Acry_3045 NC_009484.1 3326855 3327169 D hypothetical protein 3326855..3327169 Acidiphilium cryptum JF-5 5161014 YP_001236154.1 CDS Acry_3046 NC_009484.1 3327173 3328063 D hypothetical protein 3327173..3328063 Acidiphilium cryptum JF-5 5161015 YP_001236155.1 CDS Acry_3047 NC_009484.1 3328060 3328362 D hypothetical protein 3328060..3328362 Acidiphilium cryptum JF-5 5160954 YP_001236156.1 CDS Acry_3048 NC_009484.1 3328387 3330123 D PFAM: metallophosphoesterase; 5'-Nucleotidase domain protein; 5'-nucleotidase domain-containing protein 3328387..3330123 Acidiphilium cryptum JF-5 5160955 YP_001236157.1 CDS Acry_3049 NC_009484.1 3330120 3330557 D hypothetical protein 3330120..3330557 Acidiphilium cryptum JF-5 5160868 YP_001236158.1 CDS Acry_3050 NC_009484.1 3330657 3331442 D PFAM: protein of unknown function DUF81; hypothetical protein 3330657..3331442 Acidiphilium cryptum JF-5 5160825 YP_001236159.1 CDS Acry_3051 NC_009484.1 3331494 3332993 D PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_4; hypothetical protein 3331494..3332993 Acidiphilium cryptum JF-5 5160826 YP_001236160.1 CDS Acry_3052 NC_009484.1 3333135 3333506 R hypothetical protein complement(3333135..3333506) Acidiphilium cryptum JF-5 5161009 YP_001236161.1 CDS Acry_3053 NC_009484.1 3333561 3333950 R PFAM: protein of unknown function DUF302; hypothetical protein complement(3333561..3333950) Acidiphilium cryptum JF-5 5161010 YP_001236162.1 CDS Acry_3054 NC_009484.1 3334096 3336072 R PFAM: phosphoesterase; phosphoesterase complement(3334096..3336072) Acidiphilium cryptum JF-5 5161087 YP_001236163.1 CDS Acry_3055 NC_009484.1 3336222 3337400 R TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; acetate kinase complement(3336222..3337400) Acidiphilium cryptum JF-5 5161016 YP_001236164.1 CDS Acry_3056 NC_009484.1 3337435 3338367 R PFAM: Forkhead-associated protein; putative adenylate/guanylate cyclase complement(3337435..3338367) Acidiphilium cryptum JF-5 5161017 YP_001236165.1 CDS Acry_3057 NC_009484.1 3338527 3339960 R TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase, catalytic region; glutamine synthetase, beta-Grasp; glutamine synthetase, type I complement(3338527..3339960) Acidiphilium cryptum JF-5 5161116 YP_001236166.1 CDS Acry_3058 NC_009484.1 3340043 3340381 R PFAM: nitrogen regulatory protein P-II; nitrogen regulatory protein P-II complement(3340043..3340381) Acidiphilium cryptum JF-5 5161117 YP_001236167.1 CDS Acry_3059 NC_009484.1 3340645 3341838 D PFAM: aminotransferase, class V; aminotransferase, class I and II; hypothetical protein 3340645..3341838 Acidiphilium cryptum JF-5 5159976 YP_001236168.1 CDS Acry_3060 NC_009484.1 3341876 3342730 D PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 3341876..3342730 Acidiphilium cryptum JF-5 5160379 YP_001236169.1 CDS Acry_3061 NC_009484.1 3342727 3343488 D PFAM: ATP-NAD/AcoX kinase; NAD(+) kinase 3342727..3343488 Acidiphilium cryptum JF-5 5160380 YP_001236170.1 CDS Acry_3062 NC_009484.1 3343997 3344524 R PFAM: protein of unknown function UPF0157; hypothetical protein complement(3343997..3344524) Acidiphilium cryptum JF-5 5161152 YP_001236171.1 CDS Acry_3063 NC_009484.1 3344546 3345529 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(3344546..3345529) Acidiphilium cryptum JF-5 5161153 YP_001236172.1 CDS Acry_3064 NC_009484.1 3345626 3346213 D hypothetical protein 3345626..3346213 Acidiphilium cryptum JF-5 5161171 YP_001236173.1 CDS Acry_3065 NC_009484.1 3346262 3346567 D hypothetical protein 3346262..3346567 Acidiphilium cryptum JF-5 5161133 YP_001236174.1 CDS Acry_3066 NC_009484.1 3346606 3347547 R PFAM: regulatory protein, LysR; LysR, substrate-binding; LysR family transcriptional regulator complement(3346606..3347547) Acidiphilium cryptum JF-5 5161134 YP_001236175.1 CDS Acry_3068 NC_009484.1 3348345 3348830 R PFAM: protein of unknown function DUF796; hypothetical protein complement(3348345..3348830) Acidiphilium cryptum JF-5 5162561 YP_001236176.1 CDS Acry_3069 NC_009484.1 3348860 3351508 R PFAM: AAA ATPase, central domain protein; Clp N terminal domain protein; ATPase associated with various cellular activities, AAA_5; ATPase AAA-2 domain protein; SMART: AAA ATPase; ATPase complement(3348860..3351508) Acidiphilium cryptum JF-5 5162360 YP_001236177.1 CDS Acry_3070 NC_009484.1 3351662 3352780 D PFAM: ImpA domain protein; ImpA domain-containing protein 3351662..3352780 Acidiphilium cryptum JF-5 5159954 YP_001236178.1 CDS Acry_3071 NC_009484.1 3352802 3354295 R PFAM: protein of unknown function DUF877; hypothetical protein complement(3352802..3354295) Acidiphilium cryptum JF-5 5161035 YP_001236179.1 CDS Acry_3072 NC_009484.1 3354316 3355809 R PFAM: protein of unknown function DUF877; hypothetical protein complement(3354316..3355809) Acidiphilium cryptum JF-5 5161036 YP_001236180.1 CDS Acry_3073 NC_009484.1 3355813 3356319 R PFAM: uncharacterised conserved protein UCP028301; hypothetical protein complement(3355813..3356319) Acidiphilium cryptum JF-5 5160932 YP_001236181.1 CDS Acry_3074 NC_009484.1 3356647 3357462 D PFAM: virulence protein, SciE type; virulence protein, SciE type 3356647..3357462 Acidiphilium cryptum JF-5 5160933 YP_001236182.1 CDS Acry_3075 NC_009484.1 3357462 3357983 D PFAM: GPW/gp25 family protein; GPW/gp25 family protein 3357462..3357983 Acidiphilium cryptum JF-5 5160998 YP_001236183.1 CDS Acry_3076 NC_009484.1 3357976 3359793 D PFAM: protein of unknown function DUF879; hypothetical protein 3357976..3359793 Acidiphilium cryptum JF-5 5161097 YP_001236184.1 CDS Acry_3077 NC_009484.1 3359790 3360899 D PFAM: protein of unknown function DUF1305; hypothetical protein 3359790..3360899 Acidiphilium cryptum JF-5 5161098 YP_001236185.1 CDS Acry_3078 NC_009484.1 3360896 3362434 D PFAM: Methyltransferase type 11; Methyltransferase type 12; type 12 methyltransferase 3360896..3362434 Acidiphilium cryptum JF-5 5161165 YP_001236186.1 CDS Acry_3079 NC_009484.1 3362448 3363557 R hypothetical protein complement(3362448..3363557) Acidiphilium cryptum JF-5 5161166 YP_001236187.1 CDS Acry_3080 NC_009484.1 3363554 3364147 R hypothetical protein complement(3363554..3364147) Acidiphilium cryptum JF-5 5161107 YP_001236188.1 CDS Acry_3081 NC_009484.1 3364397 3365095 R PFAM: phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(3364397..3365095) Acidiphilium cryptum JF-5 5161102 YP_001236189.1 CDS Acry_3082 NC_009484.1 3365095 3365751 R PFAM: protein of unknown function DUF218; hypothetical protein complement(3365095..3365751) Acidiphilium cryptum JF-5 5161103 YP_001236190.1 CDS Acry_3083 NC_009484.1 3365748 3366674 R PFAM: protein of unknown function DUF214; hypothetical protein complement(3365748..3366674) Acidiphilium cryptum JF-5 5160879 YP_001236191.1 CDS Acry_3084 NC_009484.1 3366687 3367358 R TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE complement(3366687..3367358) Acidiphilium cryptum JF-5 5160880 YP_001236192.1 CDS Acry_3085 NC_009484.1 3367420 3367956 D TIGRFAM: MJ0042 family finger-like protein; Zinc finger-domain-containing protein 3367420..3367956 Acidiphilium cryptum JF-5 5162282 YP_001236193.1 CDS Acry_3086 NC_009484.1 3368005 3369057 D PFAM: peptidase M19, renal dipeptidase; membrane dipeptidase 3368005..3369057 Acidiphilium cryptum JF-5 5161176 YP_001236194.1 CDS Acry_3087 NC_009484.1 3369104 3370924 R molecular chaperone; heat shock protein 90 complement(3369104..3370924) Acidiphilium cryptum JF-5 5161177 YP_001236195.1 CDS Acry_3088 NC_009484.1 3371062 3373575 D PFAM: helicase domain protein; helicase domain-containing protein 3371062..3373575 Acidiphilium cryptum JF-5 5161205 YP_001236196.1 CDS Acry_3089 NC_009484.1 3373562 3373858 D PFAM: RNA-binding S4 domain protein; RNA-binding S4 domain-containing protein 3373562..3373858 Acidiphilium cryptum JF-5 5161206 YP_001236197.1 CDS Acry_3090 NC_009484.1 3373936 3374268 D PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; 4Fe-4S ferredoxin 3373936..3374268 Acidiphilium cryptum JF-5 5161294 YP_001236198.1 CDS Acry_3091 NC_009484.1 3374391 3375191 D PFAM: transcription factor CarD; CarD family transcriptional regulator 3374391..3375191 Acidiphilium cryptum JF-5 5160856 YP_001236199.1 CDS Acry_3092 NC_009484.1 3375393 3376694 D TIGRFAM: Mn2+/Fe2+ transporter, NRAMP family; PFAM: natural resistance-associated macrophage protein; Mn2+/Fe2+ transporter 3375393..3376694 Acidiphilium cryptum JF-5 5160857 YP_001236200.1 CDS Acry_3093 NC_009484.1 3376691 3377428 R PFAM: ABC transporter related; ABC transporter-like protein complement(3376691..3377428) Acidiphilium cryptum JF-5 5161241 YP_001236201.1 CDS Acry_3094 NC_009484.1 3377421 3379403 R PFAM: inner-membrane translocator; ABC transporter related; SMART: AAA ATPase; ABC transporter-like protein complement(3377421..3379403) Acidiphilium cryptum JF-5 5161242 YP_001236202.1 CDS Acry_3095 NC_009484.1 3379410 3380339 R PFAM: inner-membrane translocator; inner-membrane translocator complement(3379410..3380339) Acidiphilium cryptum JF-5 5161191 YP_001236203.1 CDS Acry_3096 NC_009484.1 3380350 3381585 R PFAM: Extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(3380350..3381585) Acidiphilium cryptum JF-5 5161318 YP_001236204.1 CDS Acry_3097 NC_009484.1 3381873 3383888 R PFAM: TonB-dependent receptor; TonB-dependent receptor, plug; TonB-dependent receptor, plug complement(3381873..3383888) Acidiphilium cryptum JF-5 5161319 YP_001236205.1 CDS Acry_3098 NC_009484.1 3384238 3384921 R TIGRFAM: haloacid dehalogenase, type II; HAD-superfamily hydrolase, subfamily IA, variant 2 (HAD-like); PFAM: Haloacid dehalogenase domain protein hydrolase; haloacid dehalogenase complement(3384238..3384921) Acidiphilium cryptum JF-5 5161149 YP_001236206.1 CDS Acry_3099 NC_009484.1 3384936 3385634 R PFAM: Glutathione S-transferase, N-terminal domain; glutathione S-transferase domain-containing protein complement(3384936..3385634) Acidiphilium cryptum JF-5 5161150 YP_001236207.1 CDS Acry_3100 NC_009484.1 3385627 3385890 R hypothetical protein complement(3385627..3385890) Acidiphilium cryptum JF-5 5161137 YP_001236208.1 CDS Acry_3101 NC_009484.1 3385887 3386525 R PFAM: regulatory protein, TetR; TetR family transcriptional regulator complement(3385887..3386525) Acidiphilium cryptum JF-5 5161433 YP_001236209.1 CDS Acry_3102 NC_009484.1 3386588 3387253 D protein-disulfide isomerase-like protein 3386588..3387253 Acidiphilium cryptum JF-5 5161434 YP_001236210.1 CDS Acry_3103 NC_009484.1 3387347 3388531 D TIGRFAM: O-succinylhomoserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate-dependent enzymes; aromatic amino acid beta-eliminating lyase/threonine aldolase; O-succinylhomoserine sulfhydrylase 3387347..3388531 Acidiphilium cryptum JF-5 5161292 YP_001236211.1 CDS Acry_3104 NC_009484.1 3388749 3389021 D PFAM: ribosomal protein S20; 30S ribosomal protein S20 3388749..3389021 Acidiphilium cryptum JF-5 5161293 Acry_R0001 tRNA Acry_R0001 NC_009484.1 42985 43060 D tRNA-Lys 42985..43060 Acidiphilium cryptum JF-5 5162269 Acry_R0002 tRNA Acry_R0002 NC_009484.1 43236 43310 R tRNA-Thr complement(43236..43310) Acidiphilium cryptum JF-5 5162318 Acry_R0003 tRNA Acry_R0003 NC_009484.1 89466 89551 D tRNA-Tyr 89466..89551 Acidiphilium cryptum JF-5 5161981 Acry_R0004 tRNA Acry_R0004 NC_009484.1 269117 269206 R tRNA-Ser complement(269117..269206) Acidiphilium cryptum JF-5 5162529 Acry_R0005 tRNA Acry_R0005 NC_009484.1 308460 308536 R tRNA-Pro complement(308460..308536) Acidiphilium cryptum JF-5 5160385 Acry_R0006 tRNA Acry_R0006 NC_009484.1 316373 316462 D tRNA-Ser 316373..316462 Acidiphilium cryptum JF-5 5160135 Acry_R0007 tRNA Acry_R0007 NC_009484.1 409792 409866 D tRNA-Gly 409792..409866 Acidiphilium cryptum JF-5 5161665 Acry_R0008 tRNA Acry_R0008 NC_009484.1 708415 708489 D tRNA-Val 708415..708489 Acidiphilium cryptum JF-5 5160138 Acry_R0009 tRNA Acry_R0009 NC_009484.1 779659 779735 R tRNA-Arg complement(779659..779735) Acidiphilium cryptum JF-5 5160637 Acry_R0010 tRNA Acry_R0010 NC_009484.1 780126 780199 R tRNA-Pro complement(780126..780199) Acidiphilium cryptum JF-5 5159968 Acry_R0011 tRNA Acry_R0011 NC_009484.1 824823 824897 D tRNA-Thr 824823..824897 Acidiphilium cryptum JF-5 5162550 Acry_R0012 tRNA Acry_R0012 NC_009484.1 829736 829810 D tRNA-Gln 829736..829810 Acidiphilium cryptum JF-5 5159710 Acry_R0013 tRNA Acry_R0013 NC_009484.1 1017347 1017428 D tRNA-Leu 1017347..1017428 Acidiphilium cryptum JF-5 5162536 Acry_R0014 tRNA Acry_R0014 NC_009484.1 1024118 1024189 D tRNA-Val 1024118..1024189 Acidiphilium cryptum JF-5 5160632 Acry_R0015 tRNA Acry_R0015 NC_009484.1 1024515 1024591 D tRNA-Asp 1024515..1024591 Acidiphilium cryptum JF-5 5160364 Acry_R0016 tRNA Acry_R0016 NC_009484.1 1137874 1137950 R tRNA-Trp complement(1137874..1137950) Acidiphilium cryptum JF-5 5160318 Acry_R0017 tRNA Acry_R0017 NC_009484.1 1144880 1144953 R tRNA-Gly complement(1144880..1144953) Acidiphilium cryptum JF-5 5159931 Acry_R0019 tRNA Acry_R0019 NC_009484.1 1312606 1312681 R tRNA-Lys complement(1312606..1312681) Acidiphilium cryptum JF-5 5162188 Acry_R0020 tRNA Acry_R0020 NC_009484.1 1431753 1431842 D tRNA-Ser 1431753..1431842 Acidiphilium cryptum JF-5 5161432 Acry_R0021 tRNA Acry_R0021 NC_009484.1 1448307 1448382 R tRNA-Glu complement(1448307..1448382) Acidiphilium cryptum JF-5 5160947 Acry_R0022 tRNA Acry_R0022 NC_009484.1 1668357 1668433 D tRNA-Arg 1668357..1668433 Acidiphilium cryptum JF-5 5160589 Acry_R0023 tRNA Acry_R0023 NC_009484.1 1668714 1668788 R tRNA-Thr complement(1668714..1668788) Acidiphilium cryptum JF-5 5162450 Acry_R0024 tRNA Acry_R0024 NC_009484.1 1711813 1711887 D tRNA-Met 1711813..1711887 Acidiphilium cryptum JF-5 5161261 Acry_R0025 tRNA Acry_R0025 NC_009484.1 1734359 1734434 R tRNA-Ala complement(1734359..1734434) Acidiphilium cryptum JF-5 5161769 Acry_R0026 tRNA Acry_R0026 NC_009484.1 1843982 1844067 D tRNA-Leu 1843982..1844067 Acidiphilium cryptum JF-5 5161631 Acry_R0027 tRNA Acry_R0027 NC_009484.1 1863143 1863225 D tRNA-Leu 1863143..1863225 Acidiphilium cryptum JF-5 5160288 Acry_R0028 tRNA Acry_R0028 NC_009484.1 1867251 1867327 D tRNA-Pro 1867251..1867327 Acidiphilium cryptum JF-5 5162324 Acry_R0029 tRNA Acry_R0029 NC_009484.1 1900697 1900772 D tRNA-His 1900697..1900772 Acidiphilium cryptum JF-5 5161284 Acry_R0030 tRNA Acry_R0030 NC_009484.1 1960152 1960225 R tRNA-Cys complement(1960152..1960225) Acidiphilium cryptum JF-5 5161492 Acry_R0031 tRNA Acry_R0031 NC_009484.1 2007442 2007518 R tRNA-Met complement(2007442..2007518) Acidiphilium cryptum JF-5 5160646 Acry_R0034 tRNA Acry_R0034 NC_009484.1 2010925 2010997 R tRNA-Ala complement(2010925..2010997) Acidiphilium cryptum JF-5 5162354 Acry_R0035 tRNA Acry_R0035 NC_009484.1 2011118 2011191 R tRNA-Ile complement(2011118..2011191) Acidiphilium cryptum JF-5 5160959 Acry_R0037 tRNA Acry_R0037 NC_009484.1 2182743 2182818 R tRNA-Phe complement(2182743..2182818) Acidiphilium cryptum JF-5 5162374 Acry_R0039 tRNA Acry_R0039 NC_009484.1 2207609 2207682 D tRNA-Gln 2207609..2207682 Acidiphilium cryptum JF-5 5161273 Acry_R0040 tRNA Acry_R0040 NC_009484.1 2351947 2352023 D tRNA-Arg 2351947..2352023 Acidiphilium cryptum JF-5 5161992 Acry_R0041 tRNA Acry_R0041 NC_009484.1 2521461 2521546 R tRNA-Leu complement(2521461..2521546) Acidiphilium cryptum JF-5 5159789 Acry_R0042 tRNA Acry_R0042 NC_009484.1 2523927 2524019 D tRNA-Ser 2523927..2524019 Acidiphilium cryptum JF-5 5160105 Acry_R0043 tRNA Acry_R0043 NC_009484.1 2585597 2585673 R tRNA-Met complement(2585597..2585673) Acidiphilium cryptum JF-5 5160392 Acry_R0046 tRNA Acry_R0046 NC_009484.1 2589080 2589152 R tRNA-Ala complement(2589080..2589152) Acidiphilium cryptum JF-5 5162208 Acry_R0047 tRNA Acry_R0047 NC_009484.1 2589273 2589346 R tRNA-Ile complement(2589273..2589346) Acidiphilium cryptum JF-5 5162205 Acry_R0049 tRNA Acry_R0049 NC_009484.1 2682423 2682496 R tRNA-Gly complement(2682423..2682496) Acidiphilium cryptum JF-5 5160869 Acry_R0050 tRNA Acry_R0050 NC_009484.1 2743548 2743623 R tRNA-Met complement(2743548..2743623) Acidiphilium cryptum JF-5 5161470 Acry_R0051 tRNA Acry_R0051 NC_009484.1 2915409 2915484 R tRNA-Ala complement(2915409..2915484) Acidiphilium cryptum JF-5 5159831 Acry_R0052 tRNA Acry_R0052 NC_009484.1 2978235 2978310 D tRNA-Glu 2978235..2978310 Acidiphilium cryptum JF-5 5162140 Acry_R0053 tRNA Acry_R0053 NC_009484.1 3076810 3076884 D tRNA-Val 3076810..3076884 Acidiphilium cryptum JF-5 5161160 Acry_R0054 tRNA Acry_R0054 NC_009484.1 3081831 3081907 R tRNA-Arg complement(3081831..3081907) Acidiphilium cryptum JF-5 5160092 Acry_R0056 tRNA Acry_R0056 NC_009484.1 3177382 3177457 R tRNA-Asn complement(3177382..3177457) Acidiphilium cryptum JF-5 5159493 Acry_R0032 rRNA Acry_R0032 NC_009484.1 2007537 2007664 R 5S ribosomal RNA complement(2007537..2007664) Acidiphilium cryptum JF-5 5161885 Acry_R0033 rRNA Acry_R0033 NC_009484.1 2007753 2010488 R 23S ribosomal RNA complement(2007753..2010488) Acidiphilium cryptum JF-5 5161884 Acry_R0036 rRNA Acry_R0036 NC_009484.1 2011416 2012908 R 16S ribosomal RNA complement(2011416..2012908) Acidiphilium cryptum JF-5 5160133 Acry_R0044 rRNA Acry_R0044 NC_009484.1 2585692 2585819 R 5S ribosomal RNA complement(2585692..2585819) Acidiphilium cryptum JF-5 5161944 Acry_R0045 rRNA Acry_R0045 NC_009484.1 2585908 2588643 R 23S ribosomal RNA complement(2585908..2588643) Acidiphilium cryptum JF-5 5162155 Acry_R0048 rRNA Acry_R0048 NC_009484.1 2589571 2591063 R 16S ribosomal RNA complement(2589571..2591063) Acidiphilium cryptum JF-5 5162462