-- dump date 20140618_184716 -- class Genbank::Feature -- table feature -- table main -- field 1 id -- field 2 type -- field 3 name -- field 4 contig -- field 5 start_pos -- field 6 end_pos -- field 7 strand -- field 8 description -- field 9 chrom_position -- field 10 organism -- field 11 GeneID -- header -- id type name contig start_pos end_pos strand description chrom_position organism GeneID 525909000001 SEQ_END SEQ_END NC_013124.1 2158157 2158157 DR NC_013124.1; contig end 2158157..2158157 Acidimicrobium ferrooxidans DSM 10331 YP_003108649.1 CDS Afer_0001 NC_013124.1 87 1463 D KEGG: ace:Acel_0001 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase; chromosomal replication initiator protein DnaA 87..1463 Acidimicrobium ferrooxidans DSM 10331 8324142 YP_003108650.1 CDS Afer_0002 NC_013124.1 1687 2787 D KEGG: rxy:Rxyl_0002 DNA polymerase III, beta subunit; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain; DNA polymerase III subunit beta 1687..2787 Acidimicrobium ferrooxidans DSM 10331 8322048 YP_003108651.1 CDS Afer_0003 NC_013124.1 2796 3836 D TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: sth:STH4 DNA repair and genetic recombination protein; DNA replication and repair protein RecF 2796..3836 Acidimicrobium ferrooxidans DSM 10331 8322049 YP_003108652.1 CDS Afer_0004 NC_013124.1 3847 4161 D hypothetical protein 3847..4161 Acidimicrobium ferrooxidans DSM 10331 8322050 YP_003108653.1 CDS Afer_0005 NC_013124.1 4247 6190 D KEGG: ace:Acel_0005 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; DNA gyrase subunit B domain protein; TOPRIM domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein; DNA gyrase subunit B 4247..6190 Acidimicrobium ferrooxidans DSM 10331 8322051 YP_003108654.1 CDS Afer_0006 NC_013124.1 6222 8672 D KEGG: chy:CHY_2704 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A; DNA gyrase subunit A 6222..8672 Acidimicrobium ferrooxidans DSM 10331 8322052 YP_003108655.1 CDS Afer_0007 NC_013124.1 8721 9707 D KEGG: glycosyl hydrolase, family 18, ; K01183 chitinase; hypothetical protein 8721..9707 Acidimicrobium ferrooxidans DSM 10331 8322053 YP_003108656.1 CDS Afer_0008 NC_013124.1 9712 11214 D PFAM: type II secretion system protein E; KEGG: sco:SCO4526 protein kinase; type II secretion system protein E 9712..11214 Acidimicrobium ferrooxidans DSM 10331 8322054 YP_003108657.1 CDS Afer_0009 NC_013124.1 11311 11580 D hypothetical protein 11311..11580 Acidimicrobium ferrooxidans DSM 10331 8322055 YP_003108658.1 CDS Afer_0010 NC_013124.1 11586 11957 D hypothetical protein 11586..11957 Acidimicrobium ferrooxidans DSM 10331 8322056 YP_003108659.1 CDS Afer_0011 NC_013124.1 11957 12382 D KEGG: GK18624; hypothetical protein 11957..12382 Acidimicrobium ferrooxidans DSM 10331 8322057 YP_003108660.1 CDS Afer_0012 NC_013124.1 12379 12861 D hypothetical protein 12379..12861 Acidimicrobium ferrooxidans DSM 10331 8322058 YP_003108661.1 CDS Afer_0013 NC_013124.1 12858 14492 D KEGG: saq:Sare_5011 Na+/solute symporter; hypothetical protein 12858..14492 Acidimicrobium ferrooxidans DSM 10331 8322059 YP_003108662.1 CDS Afer_0014 NC_013124.1 14486 14986 D hypothetical protein 14486..14986 Acidimicrobium ferrooxidans DSM 10331 8322060 YP_003108663.1 CDS Afer_0015 NC_013124.1 14983 15468 D KEGG: cak:Caul_4339 peptidase M28; hypothetical protein 14983..15468 Acidimicrobium ferrooxidans DSM 10331 8322061 YP_003108664.1 CDS Afer_0016 NC_013124.1 15525 16175 D KEGG: GK12395; hypothetical protein 15525..16175 Acidimicrobium ferrooxidans DSM 10331 8322062 YP_003108665.1 CDS Afer_0017 NC_013124.1 16178 16954 D KEGG: dvu:DVU2710 hypothetical protein; hypothetical protein 16178..16954 Acidimicrobium ferrooxidans DSM 10331 8322063 YP_003108666.1 CDS Afer_0018 NC_013124.1 16951 17850 D hypothetical protein 16951..17850 Acidimicrobium ferrooxidans DSM 10331 8322064 YP_003108667.1 CDS Afer_0019 NC_013124.1 17862 18785 D KEGG: ret:RHE_CH02708 hypothetical protein; hypothetical protein 17862..18785 Acidimicrobium ferrooxidans DSM 10331 8322065 YP_003108668.1 CDS Afer_0020 NC_013124.1 18791 20422 R KEGG: aau:AAur_3218 glycosyl hydrolase family protein; PFAM: Carbohydrate-binding family V/XII; SMART: Carbohydrate-binding family V/XII; Chitinase complement(18791..20422) Acidimicrobium ferrooxidans DSM 10331 8322066 YP_003108669.1 CDS Afer_0021 NC_013124.1 20600 22321 D KEGG: aau:AAur_3217 hypothetical protein; hypothetical protein 20600..22321 Acidimicrobium ferrooxidans DSM 10331 8322067 YP_003108670.1 CDS Afer_0022 NC_013124.1 22318 23706 D PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: bln:Blon_0041 hypothetical protein; diguanylate phosphodiesterase 22318..23706 Acidimicrobium ferrooxidans DSM 10331 8322068 YP_003108671.1 CDS Afer_0023 NC_013124.1 23703 25091 R TIGRFAM: tRNA adenylyltransferase; metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: sgr:SGR_3683 RNA nucleotidyltransferase; polynucleotide adenylyltransferase/metal dependent phosphohydrolase complement(23703..25091) Acidimicrobium ferrooxidans DSM 10331 8322069 YP_003108672.1 CDS Afer_0024 NC_013124.1 25103 26134 R PFAM: histone deacetylase superfamily; KEGG: sul:SYO3AOP1_1212 histone deacetylase superfamily; histone deacetylase superfamily complement(25103..26134) Acidimicrobium ferrooxidans DSM 10331 8322070 YP_003108673.1 CDS Afer_0025 NC_013124.1 26239 26946 D PFAM: GCN5-related N-acetyltransferase; KEGG: cau:Caur_1705 GCN5-related N- acetyltransferase; GCN5-like N-acetyltransferase 26239..26946 Acidimicrobium ferrooxidans DSM 10331 8322071 YP_003108674.1 CDS Afer_0026 NC_013124.1 26927 28705 D KEGG: GF17743 gene product from transcript GF17743- RA; hypothetical protein 26927..28705 Acidimicrobium ferrooxidans DSM 10331 8322072 YP_003108675.1 CDS Afer_0027 NC_013124.1 28705 30312 D TIGRFAM: integral membrane protein MviN; PFAM: virulence factor MVIN family protein; multi antimicrobial extrusion protein MatE; KEGG: fal:FRAAL6865 hypothetical protein; integral membrane protein MviN 28705..30312 Acidimicrobium ferrooxidans DSM 10331 8322073 YP_003108676.1 CDS Afer_0028 NC_013124.1 30309 31151 D TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: hau:Haur_0363 DegV family protein; degV family protein 30309..31151 Acidimicrobium ferrooxidans DSM 10331 8322074 YP_003108677.1 CDS Afer_0029 NC_013124.1 31219 31545 D hypothetical protein 31219..31545 Acidimicrobium ferrooxidans DSM 10331 8322075 YP_003108678.1 CDS Afer_0030 NC_013124.1 31574 32536 D KEGG: fra:Francci3_4536 thioredoxin reductase; TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD dependent oxidoreductase; thioredoxin reductase 31574..32536 Acidimicrobium ferrooxidans DSM 10331 8322076 YP_003108679.1 CDS Afer_0031 NC_013124.1 32599 32931 D TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: mmi:MMAR_5478 thioredoxin TrxC; thioredoxin 32599..32931 Acidimicrobium ferrooxidans DSM 10331 8322077 YP_003108680.1 CDS Afer_0032 NC_013124.1 32949 33920 D PFAM: Peptidoglycan-binding domain 1 protein; KEGG: ace:Acel_2150 cell wall hydrolase/autolysin; peptidoglycan-binding domain 1 protein 32949..33920 Acidimicrobium ferrooxidans DSM 10331 8322078 YP_003108681.1 CDS Afer_0033 NC_013124.1 34708 35217 D PFAM: DNA polymerase beta domain protein region; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cmi:CMM_2452 Cro/CI family transcriptional regulator/nucleotidyltransferase; XRE family transcriptional regulator 34708..35217 Acidimicrobium ferrooxidans DSM 10331 8322080 YP_003108682.1 CDS Afer_0034 NC_013124.1 35214 35567 D PFAM: protein of unknown function DUF86; KEGG: tel:tll2231 hypothetical protein; hypothetical protein 35214..35567 Acidimicrobium ferrooxidans DSM 10331 8322081 YP_003108683.1 CDS Afer_0035 NC_013124.1 35856 36818 R KEGG: fjo:Fjoh_1984 proline-specific peptidase; TIGRFAM: proline-specific peptidase; PFAM: alpha/beta hydrolase fold; proline-specific peptidase complement(35856..36818) Acidimicrobium ferrooxidans DSM 10331 8322082 YP_003108684.1 CDS Afer_0036 NC_013124.1 36917 38089 D PFAM: major facilitator superfamily MFS_1; KEGG: cma:Cmaq_1162 major facilitator transporter; major facilitator superfamily protein 36917..38089 Acidimicrobium ferrooxidans DSM 10331 8322083 YP_003108685.1 CDS Afer_0037 NC_013124.1 38103 39182 R PFAM: Myo-inositol-1-phosphate synthase; Myo- inositol-1-phosphate synthase GAPDH domain protein; KEGG: saq:Sare_5081 myo-inositol-1-phosphate synthase; Myo-inositol-1-phosphate synthase complement(38103..39182) Acidimicrobium ferrooxidans DSM 10331 8322084 YP_003108686.1 CDS Afer_0038 NC_013124.1 39269 39862 R PFAM: transcriptional regulator PadR family protein; KEGG: fra:Francci3_4528 PadR family transcriptional regulator; PadR family transcriptional regulator complement(39269..39862) Acidimicrobium ferrooxidans DSM 10331 8322085 YP_003108687.1 CDS Afer_0039 NC_013124.1 39960 40349 D KEGG: ace:Acel_2136 hypothetical protein; hypothetical protein 39960..40349 Acidimicrobium ferrooxidans DSM 10331 8322086 YP_003108688.1 CDS Afer_0040 NC_013124.1 40429 41328 D KEGG: bja:blr2101 3-methyl-2-oxobutanoate hydroxymethyltransferase; TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase; PFAM: Ketopantoate hydroxymethyltransferase; 3-methyl-2-oxobutanoatehydroxymethyltransferase 40429..41328 Acidimicrobium ferrooxidans DSM 10331 8322087 YP_003108689.1 CDS Afer_0041 NC_013124.1 41325 43082 R KEGG: cya:CYA_1550 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase; Hedgehog/intein hint domain protein; replicative DNA helicase complement(41325..43082) Acidimicrobium ferrooxidans DSM 10331 8322088 YP_003108690.1 CDS Afer_0042 NC_013124.1 43096 43548 R TIGRFAM: ribosomal protein L9; PFAM: ribosomal protein L9; KEGG: fre:Franean1_7309 ribosomal protein L9; 50S ribosomal protein L9 complement(43096..43548) Acidimicrobium ferrooxidans DSM 10331 8322089 YP_003108691.1 CDS Afer_0043 NC_013124.1 43545 43952 R TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; KEGG: tfu:Tfu_3093 30S ribosomal protein S18; 30S ribosomal protein S18 complement(43545..43952) Acidimicrobium ferrooxidans DSM 10331 8322090 YP_003108692.1 CDS Afer_0044 NC_013124.1 43956 44402 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: fal:FRAAL6852 single-strand DNA-binding protein; single-strand binding protein complement(43956..44402) Acidimicrobium ferrooxidans DSM 10331 8322091 YP_003108693.1 CDS Afer_0045 NC_013124.1 44430 44768 R TIGRFAM: ribosomal protein S6; PFAM: ribosomal protein S6; KEGG: tte:TTE2781 30S ribosomal protein S6; 30S ribosomal protein S6 complement(44430..44768) Acidimicrobium ferrooxidans DSM 10331 8322092 YP_003108694.1 CDS Afer_0046 NC_013124.1 44852 45481 R hypothetical protein complement(44852..45481) Acidimicrobium ferrooxidans DSM 10331 8322093 YP_003108695.1 CDS Afer_0047 NC_013124.1 45648 46052 D hypothetical protein 45648..46052 Acidimicrobium ferrooxidans DSM 10331 8322094 YP_003108696.1 CDS Afer_0048 NC_013124.1 46052 46750 D hypothetical protein 46052..46750 Acidimicrobium ferrooxidans DSM 10331 8322095 YP_003108697.1 CDS Afer_0049 NC_013124.1 46722 47768 R PFAM: sodium/hydrogen exchanger; KEGG: ank:AnaeK_3726 sodium/hydrogen exchanger; sodium/hydrogen exchanger complement(46722..47768) Acidimicrobium ferrooxidans DSM 10331 8322096 YP_003108698.1 CDS Afer_0050 NC_013124.1 47864 48529 D PFAM: Secreted repeat of unknown function; KEGG: ace:Acel_0027 hypothetical protein; hypothetical protein 47864..48529 Acidimicrobium ferrooxidans DSM 10331 8322097 YP_003108699.1 CDS Afer_0051 NC_013124.1 48548 50578 R PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: fre:Franean1_0238 hypothetical protein; hypothetical protein complement(48548..50578) Acidimicrobium ferrooxidans DSM 10331 8322098 YP_003108700.1 CDS Afer_0052 NC_013124.1 50613 51218 R TIGRFAM: deoxycytidine triphosphate deaminase; PFAM: deoxyUTP pyrophosphatase; KEGG: mva:Mvan_0589 deoxycytidine triphosphate deaminase; deoxycytidine triphosphate deaminase complement(50613..51218) Acidimicrobium ferrooxidans DSM 10331 8322099 YP_003108701.1 CDS Afer_0055 NC_013124.1 53466 54029 R KEGG: mbb:BCG_3106 hypothetical protein; hypothetical protein complement(53466..54029) Acidimicrobium ferrooxidans DSM 10331 8322103 YP_003108702.1 CDS Afer_0056 NC_013124.1 54022 54441 R KEGG: fre:Franean1_6980 hypothetical protein; hypothetical protein complement(54022..54441) Acidimicrobium ferrooxidans DSM 10331 8322104 YP_003108703.1 CDS Afer_0059 NC_013124.1 55114 55506 R hypothetical protein complement(55114..55506) Acidimicrobium ferrooxidans DSM 10331 8322107 YP_003108704.1 CDS Afer_0060 NC_013124.1 55510 55656 R hypothetical protein complement(55510..55656) Acidimicrobium ferrooxidans DSM 10331 8322108 YP_003108705.1 CDS Afer_0061 NC_013124.1 55830 56504 D PFAM: regulatory protein TetR; KEGG: gvi:gll0671 TetR family transcriptional regulatory protein; TetR family transcriptional regulator 55830..56504 Acidimicrobium ferrooxidans DSM 10331 8322109 YP_003108706.1 CDS Afer_0062 NC_013124.1 56501 57106 D hypothetical protein 56501..57106 Acidimicrobium ferrooxidans DSM 10331 8322110 YP_003108707.1 CDS Afer_0063 NC_013124.1 57262 57585 R GntR family transcriptional regulator complement(57262..57585) Acidimicrobium ferrooxidans DSM 10331 8322111 YP_003108708.1 CDS Afer_0064 NC_013124.1 58069 58872 R KEGG: fra:Francci3_4170 hypothetical protein; hypothetical protein complement(58069..58872) Acidimicrobium ferrooxidans DSM 10331 8322112 YP_003108709.1 CDS Afer_0065 NC_013124.1 59143 60279 R PFAM: glycoside hydrolase family 5; KEGG: hypothetical protein; glycoside hydrolase family protein complement(59143..60279) Acidimicrobium ferrooxidans DSM 10331 8322113 YP_003108710.1 CDS Afer_0066 NC_013124.1 60276 60413 R hypothetical protein complement(60276..60413) Acidimicrobium ferrooxidans DSM 10331 8322114 YP_003108711.1 CDS Afer_0067 NC_013124.1 60502 60822 D PFAM: transposase IS3/IS911 family protein; KEGG: mva:Mvan_5059 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 60502..60822 Acidimicrobium ferrooxidans DSM 10331 8322115 YP_003108712.1 CDS Afer_0068 NC_013124.1 60822 61691 D PFAM: Integrase catalytic region; KEGG: mva:Mvan_5060 integrase catalytic subunit; integrase catalytic subunit 60822..61691 Acidimicrobium ferrooxidans DSM 10331 8322116 YP_003108713.1 CDS Afer_0069 NC_013124.1 61634 63103 R KEGG: mva:Mvan_4862 glycosyl transferase family protein; glycosyl transferase family protein complement(61634..63103) Acidimicrobium ferrooxidans DSM 10331 8322117 YP_003108714.1 CDS Afer_0070 NC_013124.1 63106 64401 R PFAM: glycosyl transferase family 2; KEGG: mva:Mvan_4863 glycosyl transferase family protein; family 2 glycosyl transferase complement(63106..64401) Acidimicrobium ferrooxidans DSM 10331 8322118 YP_003108715.1 CDS Afer_0071 NC_013124.1 65218 68322 D KEGG: fal:FRAAL5406 glycine-rich cell wall structural protein precursor (partial match); hypothetical protein 65218..68322 Acidimicrobium ferrooxidans DSM 10331 8322119 YP_003108716.1 CDS Afer_0072 NC_013124.1 68987 72292 D PFAM: transcriptional activator domain; KEGG: mva:Mvan_1815 transcriptional regulator; transcriptional activator domain-containing protein 68987..72292 Acidimicrobium ferrooxidans DSM 10331 8322120 YP_003108717.1 CDS Afer_0073 NC_013124.1 72700 73662 D PFAM: peptidase C60 sortase A and B; KEGG: met:M446_5133 peptidase C60 sortase A and B; peptidase C60 sortase A and B 72700..73662 Acidimicrobium ferrooxidans DSM 10331 8322121 YP_003108718.1 CDS Afer_0074 NC_013124.1 74290 75141 R PFAM: Patatin; KEGG: mmi:MMAR_2150 alpha-beta hydrolase superfamily esterase; Patatin complement(74290..75141) Acidimicrobium ferrooxidans DSM 10331 8322122 YP_003108719.1 CDS Afer_0075 NC_013124.1 75157 75684 R PFAM: regulatory protein MarR; regulatory protein Crp; SMART: regulatory protein MarR; KEGG: esi:Exig_2989 MarR family transcriptional regulator; MarR family transcriptional regulator complement(75157..75684) Acidimicrobium ferrooxidans DSM 10331 8322123 YP_003108720.1 CDS Afer_0076 NC_013124.1 75804 77180 D PFAM: Pyridoxal-dependent decarboxylase; KEGG: fra:Francci3_0279 pyridoxal-dependent decarboxylase; Pyridoxal-dependent decarboxylase 75804..77180 Acidimicrobium ferrooxidans DSM 10331 8322124 YP_003108721.1 CDS Afer_0077 NC_013124.1 77177 77593 D PFAM: histidine triad (HIT) protein; KEGG: pna:Pnap_4872 histidine triad (HIT) protein; histidine triad (HIT) protein 77177..77593 Acidimicrobium ferrooxidans DSM 10331 8322125 YP_003108722.1 CDS Afer_0078 NC_013124.1 77770 78975 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: saq:Sare_2891 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(77770..78975) Acidimicrobium ferrooxidans DSM 10331 8322126 YP_003108723.1 CDS Afer_0079 NC_013124.1 79073 79510 R PFAM: CoA-binding domain protein; KEGG: spe:Spro_1762 CoA-binding domain-containing protein; CoA-binding domain-containing protein complement(79073..79510) Acidimicrobium ferrooxidans DSM 10331 8322127 YP_003108724.1 CDS Afer_0080 NC_013124.1 79510 80421 R PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: nca:Noca_1946 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding; NAD-binding D-isomer specific 2-hydroxyacid dehydrogenase complement(79510..80421) Acidimicrobium ferrooxidans DSM 10331 8322128 YP_003108725.1 CDS Afer_0081 NC_013124.1 81088 83178 R PFAM: Peptidase S53 propeptide; KEGG: cac:CAC0625 periplasmic aspartyl protease; peptidase S53 propeptide complement(81088..83178) Acidimicrobium ferrooxidans DSM 10331 8322129 YP_003108726.1 CDS Afer_0082 NC_013124.1 83357 84634 R PFAM: tRNA synthetase class II (G H P and S); KEGG: cms:CMS_2457 histidyl-tRNA synthetase; Histidine--tRNA ligase complement(83357..84634) Acidimicrobium ferrooxidans DSM 10331 8322130 YP_003108727.1 CDS Afer_0083 NC_013124.1 84769 85296 D PFAM: Secreted repeat of unknown function; KEGG: ace:Acel_0027 hypothetical protein; hypothetical protein 84769..85296 Acidimicrobium ferrooxidans DSM 10331 8322131 YP_003108728.1 CDS Afer_0084 NC_013124.1 85398 87116 D KEGG: chy:CHY_0699 adenine deaminase; TIGRFAM: adenine deaminase; PFAM: amidohydrolase; Amidohydrolase 3; adenine deaminase 85398..87116 Acidimicrobium ferrooxidans DSM 10331 8322132 YP_003108729.1 CDS Afer_0085 NC_013124.1 87173 88348 D KEGG: rrs:RoseRS_2545 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 87173..88348 Acidimicrobium ferrooxidans DSM 10331 8322133 YP_003108730.1 CDS Afer_0086 NC_013124.1 88349 88942 D TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: mem:Memar_0072 glutamine amidotransferase of anthranilate synthase; glutamine amidotransferase of anthranilate synthase 88349..88942 Acidimicrobium ferrooxidans DSM 10331 8322134 YP_003108731.1 CDS Afer_0087 NC_013124.1 89146 91083 R PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: rxy:Rxyl_0021 serine/threonine protein kinase; serine/threonine protein kinase with PASTA sensor(s) complement(89146..91083) Acidimicrobium ferrooxidans DSM 10331 8322135 YP_003108732.1 CDS Afer_0088 NC_013124.1 91136 92698 R PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: kra:Krad_0072 protein kinase; serine/threonine protein kinase with PASTA sensor(s) complement(91136..92698) Acidimicrobium ferrooxidans DSM 10331 8322136 YP_003108733.1 CDS Afer_0089 NC_013124.1 92695 94176 R PFAM: penicillin-binding protein transpeptidase; KEGG: ace:Acel_0020 peptidoglycan glycosyltransferase; penicillin-binding protein transpeptidase complement(92695..94176) Acidimicrobium ferrooxidans DSM 10331 8322137 YP_003108734.1 CDS Afer_0090 NC_013124.1 94169 95437 R PFAM: Stage II sporulation E family protein; Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: nfa:nfa840 protein phosphatase; protein serine/threonine phosphatase complement(94169..95437) Acidimicrobium ferrooxidans DSM 10331 8322138 YP_003108735.1 CDS Afer_0091 NC_013124.1 95437 95949 R PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: cef:CE0038 hypothetical protein; FHA domain-containing protein complement(95437..95949) Acidimicrobium ferrooxidans DSM 10331 8322139 YP_003108736.1 CDS Afer_0092 NC_013124.1 95954 96613 R PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: art:Arth_0026 FHA domain containing protein; FHA domain-containing protein complement(95954..96613) Acidimicrobium ferrooxidans DSM 10331 8322140 YP_003108737.1 CDS Afer_0093 NC_013124.1 96927 97475 D KEGG: sma:SAV_5828 hypothetical protein; hypothetical protein 96927..97475 Acidimicrobium ferrooxidans DSM 10331 8322142 YP_003108738.1 CDS Afer_0094 NC_013124.1 97465 99531 R catalyzes the ring cleavage reaction in phenylacetate degradation and the formation of 3-hydroxyacyl-CoA from crotonyl-CoA; bifunctional aldehyde dehydrogenase/enoyl-CoA hydratase complement(97465..99531) Acidimicrobium ferrooxidans DSM 10331 8322143 YP_003108739.1 CDS Afer_0095 NC_013124.1 100027 100710 D KEGG: sai:Saci_2099 hypothetical protein; hypothetical protein 100027..100710 Acidimicrobium ferrooxidans DSM 10331 8322145 YP_003108740.1 CDS Afer_0096 NC_013124.1 100769 101734 D KEGG: mab:MAB_0355 ammonium transporter; hypothetical protein 100769..101734 Acidimicrobium ferrooxidans DSM 10331 8322146 YP_003108741.1 CDS Afer_0097 NC_013124.1 102542 103462 R PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: ade:Adeh_1779 prephenate dehydratase; Prephenate dehydratase complement(102542..103462) Acidimicrobium ferrooxidans DSM 10331 8322148 YP_003108742.1 CDS Afer_0098 NC_013124.1 103515 104228 D PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: mrd:Mrad2831_1356 circadian phase modifier CpmA-like protein; 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase 103515..104228 Acidimicrobium ferrooxidans DSM 10331 8322149 YP_003108743.1 CDS Afer_0099 NC_013124.1 104225 105385 D PFAM: protein of unknown function DUF111; KEGG: mem:Memar_2158 hypothetical protein; hypothetical protein 104225..105385 Acidimicrobium ferrooxidans DSM 10331 8322150 YP_003108744.1 CDS Afer_0100 NC_013124.1 105406 106413 D PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: acr:Acry_0942 alpha/beta hydrolase domain- containing protein; Alpha/beta hydrolase fold-3 domain-containing protein 105406..106413 Acidimicrobium ferrooxidans DSM 10331 8322151 YP_003108745.1 CDS Afer_0101 NC_013124.1 106429 108747 R KEGG: afe:Lferr_1558 phosphoenolpyruvate carboxylase; phosphoenolpyruvate carboxylase complement(106429..108747) Acidimicrobium ferrooxidans DSM 10331 8322152 YP_003108746.1 CDS Afer_0102 NC_013124.1 109303 111210 D KEGG: mta:Moth_0027 DNA polymerase III, subunits gamma and tau; TIGRFAM: DNA polymerase III, subunits gamma and tau; SMART: AAA ATPase; DNA polymerase III subunits gamma and tau 109303..111210 Acidimicrobium ferrooxidans DSM 10331 8322155 YP_003108747.1 CDS Afer_0103 NC_013124.1 111207 111824 D KEGG: tfu:Tfu_0044 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein; recombination protein RecR 111207..111824 Acidimicrobium ferrooxidans DSM 10331 8322156 YP_003108748.1 CDS Afer_0104 NC_013124.1 111825 112238 R TIGRFAM: methylmalonyl-CoA epimerase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: pho:PH0272 hypothetical protein; methylmalonyl-CoA epimerase complement(111825..112238) Acidimicrobium ferrooxidans DSM 10331 8322157 YP_003108749.1 CDS Afer_0105 NC_013124.1 112225 113619 R TIGRFAM: crotonyl-CoA reductase; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: stp:Strop_3612 crotonyl-CoA reductase; crotonyl-CoA reductase complement(112225..113619) Acidimicrobium ferrooxidans DSM 10331 8322158 YP_003108750.1 CDS Afer_0106 NC_013124.1 113765 114961 D KEGG: fal:FRAAL5910 acetyl-CoA acetyltransferase; TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; acetyl-CoA acetyltransferase 113765..114961 Acidimicrobium ferrooxidans DSM 10331 8322159 YP_003108751.1 CDS Afer_0107 NC_013124.1 115009 117996 D PFAM: Methyltransferase type 11; glycosyl transferase group 1; Methionine biosynthesis MetW protein; Methyltransferase type 12; KEGG: pcu:pc1183 mannosyltransferase; type 11 methyltransferase 115009..117996 Acidimicrobium ferrooxidans DSM 10331 8322160 YP_003108752.1 CDS Afer_0108 NC_013124.1 117974 118555 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: dge:Dgeo_0070 peptidylprolyl isomerase; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(117974..118555) Acidimicrobium ferrooxidans DSM 10331 8322161 YP_003108753.1 CDS Afer_0109 NC_013124.1 118617 119465 R PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: cya:CYA_1482 peptidylprolyl cis-trans isomerase, cyclophilin-type; cyclophilin type peptidyl-prolyl cis-trans isomerase complement(118617..119465) Acidimicrobium ferrooxidans DSM 10331 8322162 YP_003108754.1 CDS Afer_0111 NC_013124.1 120908 122143 D KEGG: kra:Krad_0463 aspartate kinase; TIGRFAM: aspartate kinase; aspartate kinase, monofunctional class; PFAM: aspartate/glutamate/uridylate kinase; amino acid-binding ACT domain protein; aspartate kinase 120908..122143 Acidimicrobium ferrooxidans DSM 10331 8322164 YP_003108755.1 CDS Afer_0112 NC_013124.1 122140 123165 D KEGG: cms:CMS_0161 aspartate semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerization region; Semialdehyde dehydrogenase NAD - binding; aspartate-semialdehyde dehydrogenase 122140..123165 Acidimicrobium ferrooxidans DSM 10331 8322165 YP_003108756.1 CDS Afer_0113 NC_013124.1 123288 124121 D PFAM: flagellin domain protein; KEGG: sbn:Sbal195_3089 flagellin domain-containing protein; flagellin domain-containing protein 123288..124121 Acidimicrobium ferrooxidans DSM 10331 8322166 YP_003108757.1 CDS Afer_0114 NC_013124.1 124213 126771 D PFAM: flagellar hook-associated 2 domain protein; flagellar hook-associated protein 2 domain protein; KEGG: ace:Acel_0835 flagellar hook-associated 2 domain-containing protein; flagellar hook-associated 2 domain-containing protein 124213..126771 Acidimicrobium ferrooxidans DSM 10331 8322167 YP_003108758.1 CDS Afer_0115 NC_013124.1 126819 127196 D KEGG: ace:Acel_0836 flagellar protein FliS; flagellar protein FliS 126819..127196 Acidimicrobium ferrooxidans DSM 10331 8322168 YP_003108759.1 CDS Afer_0116 NC_013124.1 127189 127476 D hypothetical protein 127189..127476 Acidimicrobium ferrooxidans DSM 10331 8322169 YP_003108760.1 CDS Afer_0118 NC_013124.1 128605 129324 D KEGG: fal:FRAAL2980 ABC transporter transmembrane protein; ABC transporter transmembrane protein 128605..129324 Acidimicrobium ferrooxidans DSM 10331 8322171 YP_003108761.1 CDS rbcL NC_013124.1 129677 131098 D type III RuBisCO; involved in carbon fixation; ribulose bisophosphate carboxylase 129677..131098 Acidimicrobium ferrooxidans DSM 10331 8322172 YP_003108762.1 CDS Afer_0120 NC_013124.1 131156 131494 D PFAM: ribulose bisphosphate carboxylase small chain; KEGG: afe:Lferr_1388 ribulose-bisphosphate carboxylase; Ribulose-bisphosphate carboxylase 131156..131494 Acidimicrobium ferrooxidans DSM 10331 8322173 YP_003108763.1 CDS Afer_0121 NC_013124.1 131672 133594 D KEGG: afe:Lferr_1387 carboxysome structural protein CsoS2; carboxysome structural protein CsoS2 131672..133594 Acidimicrobium ferrooxidans DSM 10331 8322174 YP_003108764.1 CDS Afer_0122 NC_013124.1 133623 135212 D TIGRFAM: carboxysome shell carbonic anhydrase; KEGG: afe:Lferr_1386 carboxysome shell carbonic anhydrase; carboxysome shell carbonic anhydrase 133623..135212 Acidimicrobium ferrooxidans DSM 10331 8322175 YP_003108765.1 CDS Afer_0123 NC_013124.1 135209 135460 D TIGRFAM: carboxysome peptide B; PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: afe:Lferr_1385 carboxysome peptide A; carboxysome peptide B 135209..135460 Acidimicrobium ferrooxidans DSM 10331 8322176 YP_003108766.1 CDS Afer_0124 NC_013124.1 135583 135894 D PFAM: microcompartments protein; KEGG: tbd:Tbd_2645 carboxysome shell protein CsoS1A; microcompartments protein 135583..135894 Acidimicrobium ferrooxidans DSM 10331 8322177 YP_003108767.1 CDS Afer_0125 NC_013124.1 135922 136233 D PFAM: microcompartments protein; KEGG: tbd:Tbd_2645 carboxysome shell protein CsoS1A; microcompartments protein 135922..136233 Acidimicrobium ferrooxidans DSM 10331 8322178 YP_003108768.1 CDS Afer_0126 NC_013124.1 136261 136584 D PFAM: microcompartments protein; KEGG: tbd:Tbd_2645 carboxysome shell protein CsoS1A; microcompartments protein 136261..136584 Acidimicrobium ferrooxidans DSM 10331 8322179 YP_003108769.1 CDS Afer_0127 NC_013124.1 136594 137049 D PFAM: Ferritin Dps family protein; KEGG: afe:Lferr_1380 ferritin Dps family protein; Ferritin Dps family protein 136594..137049 Acidimicrobium ferrooxidans DSM 10331 8322180 YP_003108770.1 CDS Afer_0128 NC_013124.1 137042 137302 D KEGG: afe:Lferr_1379 hypothetical protein; hypothetical protein 137042..137302 Acidimicrobium ferrooxidans DSM 10331 8322181 YP_003108771.1 CDS Afer_0129 NC_013124.1 137286 137939 D PFAM: Cobyrinic acid ac-diamide synthase; KEGG: afe:Lferr_1378 cobyrinic acid ac-diamide synthase; Cobyrinic acid ac-diamide synthase 137286..137939 Acidimicrobium ferrooxidans DSM 10331 8322182 YP_003108772.1 CDS Afer_0130 NC_013124.1 137939 138208 D hypothetical protein 137939..138208 Acidimicrobium ferrooxidans DSM 10331 8322183 YP_003108773.1 CDS Afer_0131 NC_013124.1 138312 139118 D PFAM: CbbQ/NirQ/NorQ domain protein; ATPase associated with various cellular activities AAA_5; KEGG: afe:Lferr_1376 CbbQ/NirQ/NorQ domain protein; CbbQ/NirQ/NorQ domain-containing protein 138312..139118 Acidimicrobium ferrooxidans DSM 10331 8322184 YP_003108774.1 CDS Afer_0132 NC_013124.1 139131 141476 D PFAM: von Willebrand factor A; SMART: von Willebrand factor A; KEGG: afe:Lferr_1375 von Willebrand factor A; von Willebrand factor A 139131..141476 Acidimicrobium ferrooxidans DSM 10331 8322185 YP_003108775.1 CDS Afer_0133 NC_013124.1 141738 145886 D PFAM: NADH/Ubiquinone/plastoquinone (complex I); KEGG: afe:Lferr_1358 hypothetical protein; NADH dehydrogenase (quinone) 141738..145886 Acidimicrobium ferrooxidans DSM 10331 8322186 YP_003108776.1 CDS Afer_0134 NC_013124.1 146084 146419 D PFAM: flagellar basal body rod protein; KEGG: ace:Acel_0838 flagellar basal-body rod protein; flagellar basal body rod protein 146084..146419 Acidimicrobium ferrooxidans DSM 10331 8322187 YP_003108777.1 CDS Afer_0135 NC_013124.1 146420 146854 D PFAM: protein of unknown function DUF1078 domain protein; KEGG: kra:Krad_1648 hypothetical protein; hypothetical protein 146420..146854 Acidimicrobium ferrooxidans DSM 10331 8322188 YP_003108778.1 CDS Afer_0136 NC_013124.1 146851 147147 D PFAM: flagellar hook-basal body complex protein FliE; KEGG: ace:Acel_0840 flagellar hook-basal body complex subunit FliE; flagellar hook-basal body complex protein FliE 146851..147147 Acidimicrobium ferrooxidans DSM 10331 8322189 YP_003108779.1 CDS Afer_0137 NC_013124.1 147159 148700 D TIGRFAM: flagellar M-ring protein FliF; PFAM: secretory protein YscJ/FliF family protein; Flagellar M-ring domain protein; KEGG: ace:Acel_0841 flagellar M-ring protein FliF; flagellar M-ring protein FliF 147159..148700 Acidimicrobium ferrooxidans DSM 10331 8322190 YP_003108780.1 CDS Afer_0138 NC_013124.1 148697 149710 D TIGRFAM: flagellar motor switch protein FliG; PFAM: flagellar motor switch protein FliG; KEGG: ace:Acel_0842 flagellar motor switch protein FliG; flagellar motor switch protein FliG 148697..149710 Acidimicrobium ferrooxidans DSM 10331 8322191 YP_003108781.1 CDS Afer_0139 NC_013124.1 149707 150327 D KEGG: dau:Daud_1763 flagellar biosynthesis/type III secretory pathway protein-like protein; hypothetical protein 149707..150327 Acidimicrobium ferrooxidans DSM 10331 8322192 YP_003108782.1 CDS Afer_0140 NC_013124.1 150324 151634 D KEGG: ace:Acel_0844 flagellar protein export ATPase FliI; TIGRFAM: ATPase, FliI/YscN family; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; ATPase, FliI/YscN family 150324..151634 Acidimicrobium ferrooxidans DSM 10331 8322193 YP_003108783.1 CDS Afer_0141 NC_013124.1 151631 152029 D KEGG: rpt:Rpal_3033 hypothetical protein; hypothetical protein 151631..152029 Acidimicrobium ferrooxidans DSM 10331 8322194 YP_003108784.1 CDS Afer_0142 NC_013124.1 152026 153138 D PFAM: NLP/P60 protein; Lytic transglycosylase catalytic; Transglycosylase domain protein; KEGG: ace:Acel_0846 lytic transglycosylase, catalytic; NLP/P60 protein 152026..153138 Acidimicrobium ferrooxidans DSM 10331 8322195 YP_003108785.1 CDS Afer_0143 NC_013124.1 153107 154495 D KEGG: rci:RRC32 hypothetical protein; hypothetical protein 153107..154495 Acidimicrobium ferrooxidans DSM 10331 8322196 YP_003108786.1 CDS Afer_0144 NC_013124.1 154521 155000 D PFAM: flagellar hook capping protein; KEGG: rpc:RPC_0870 flagellar hook capping protein; flagellar hook capping protein 154521..155000 Acidimicrobium ferrooxidans DSM 10331 8322197 YP_003108787.1 CDS Afer_0145 NC_013124.1 155129 156424 D PFAM: protein of unknown function DUF1078 domain protein; flagellar basal body FlaE domain protein; flagellar basal body rod protein; KEGG: ace:Acel_0849 hypothetical protein; hypothetical protein 155129..156424 Acidimicrobium ferrooxidans DSM 10331 8322198 YP_003108788.1 CDS Afer_0146 NC_013124.1 156521 156748 D PFAM: flagellar FlbD family protein; KEGG: dsy:DSY2984 hypothetical protein; flagellar FlbD family protein 156521..156748 Acidimicrobium ferrooxidans DSM 10331 8322199 YP_003108789.1 CDS Afer_0147 NC_013124.1 156752 157555 D PFAM: MotA/TolQ/ExbB proton channel; KEGG: ace:Acel_0851 MotA/TolQ/ExbB proton channel; MotA/TolQ/ExbB proton channel 156752..157555 Acidimicrobium ferrooxidans DSM 10331 8322200 YP_003108790.1 CDS Afer_0148 NC_013124.1 157557 158333 D PFAM: OmpA/MotB domain protein; KEGG: ace:Acel_0852 OmpA/MotB domain-containing protein; OmpA/MotB domain-containing protein 157557..158333 Acidimicrobium ferrooxidans DSM 10331 8322201 YP_003108791.1 CDS Afer_0149 NC_013124.1 158394 158885 D PFAM: flagellar basal body-associated protein FliL; KEGG: bpy:Bphyt_3776 flagellar basal body- associated protein FliL; flagellar basal body-associated protein FliL 158394..158885 Acidimicrobium ferrooxidans DSM 10331 8322202 YP_003108792.1 CDS Afer_0150 NC_013124.1 158966 159874 D PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: ace:Acel_0854 flagellar motor switch protein FliM; surface presentation of antigens (SPOA) protein 158966..159874 Acidimicrobium ferrooxidans DSM 10331 8322203 YP_003108793.1 CDS Afer_0151 NC_013124.1 159867 160154 D TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: ace:Acel_0855 flagellar motor switch protein FliN; flagellar motor switch protein FliN 159867..160154 Acidimicrobium ferrooxidans DSM 10331 8322204 YP_003108794.1 CDS Afer_0152 NC_013124.1 160160 160477 D PFAM: flagellar biosynthesis protein FliO; KEGG: esa:ESA_01251 flagellar biosynthesis protein FliO; flagellar biosynthesis protein FliO 160160..160477 Acidimicrobium ferrooxidans DSM 10331 8322205 YP_003108795.1 CDS Afer_0153 NC_013124.1 160499 160828 D PFAM: transposase IS3/IS911 family protein; KEGG: rxy:Rxyl_1861 transposase IS3/IS911; transposase IS3/IS911 family protein 160499..160828 Acidimicrobium ferrooxidans DSM 10331 8322206 YP_003108796.1 CDS Afer_0154 NC_013124.1 160825 161703 D PFAM: Integrase catalytic region; KEGG: amr:AM1_A0193 integrase, catalytic region; integrase catalytic subunit 160825..161703 Acidimicrobium ferrooxidans DSM 10331 8322207 YP_003108797.1 CDS Afer_0155 NC_013124.1 161843 162532 D KEGG: ace:Acel_0857 flagellar biosynthesis protein FliP; TIGRFAM: flagellar biosynthetic protein FliP; PFAM: type III secretion system inner membrane P protein; flagellar biosynthetic protein FliP 161843..162532 Acidimicrobium ferrooxidans DSM 10331 8322208 YP_003108798.1 CDS Afer_0156 NC_013124.1 162549 162824 D TIGRFAM: flagellar biosynthetic protein FliQ; PFAM: export protein FliQ family 3; KEGG: dsy:DSY2977 hypothetical protein; flagellar biosynthetic protein FliQ 162549..162824 Acidimicrobium ferrooxidans DSM 10331 8322209 YP_003108799.1 CDS Afer_0157 NC_013124.1 162834 163574 D KEGG: nca:Noca_0741 flagellar biosynthetic protein FliR; flagellar biosynthesis pathway protein 162834..163574 Acidimicrobium ferrooxidans DSM 10331 8322210 YP_003108800.1 CDS Afer_0158 NC_013124.1 163577 164749 D PFAM: type III secretion exporter; KEGG: ace:Acel_0860 type III secretion exporter; type III secretion exporter 163577..164749 Acidimicrobium ferrooxidans DSM 10331 8322211 YP_003108801.1 CDS Afer_0159 NC_013124.1 164830 166860 D TIGRFAM: flagellar biosynthesis protein FlhA; PFAM: type III secretion FHIPEP protein; KEGG: ace:Acel_0861 flagellar biosynthesis protein FlhA; flagellar biosynthesis protein FlhA 164830..166860 Acidimicrobium ferrooxidans DSM 10331 8322212 YP_003108802.1 CDS Afer_0160 NC_013124.1 166832 167770 D KEGG: GE25240 gene product from transcript GE25240- RA; hypothetical protein 166832..167770 Acidimicrobium ferrooxidans DSM 10331 8322213 YP_003108803.1 CDS Afer_0161 NC_013124.1 167773 168042 D hypothetical protein 167773..168042 Acidimicrobium ferrooxidans DSM 10331 8322214 YP_003108804.1 CDS Afer_0162 NC_013124.1 168126 168452 R PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: rha:RHA1_ro11237 sulfurtransferase, rhodanese related; Rhodanese domain-containing protein complement(168126..168452) Acidimicrobium ferrooxidans DSM 10331 8322215 YP_003108805.1 CDS Afer_0163 NC_013124.1 168652 169863 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: lbf:LBF_2704 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(168652..169863) Acidimicrobium ferrooxidans DSM 10331 8322216 YP_003108806.1 CDS Afer_0164 NC_013124.1 169989 171050 D KEGG: fal:FRAAL5776 Fe-S-cluster redox enzyme; TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; radical SAM enzyme, Cfr family 169989..171050 Acidimicrobium ferrooxidans DSM 10331 8322217 YP_003108807.1 CDS Afer_0165 NC_013124.1 171148 171822 D KEGG: afw:Anae109_0447 ribulose-phosphate 3- epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase; ribulose-phosphate 3-epimerase 171148..171822 Acidimicrobium ferrooxidans DSM 10331 8322218 YP_003108808.1 CDS Afer_0166 NC_013124.1 171819 174749 D TIGRFAM: transketolase; fructose-1,6- bisphosphatase, class II; PFAM: GlpX family protein; Transketolase domain protein; Transketolase central region; KEGG: ttj:TTHA0108 transketolase; transketolase 171819..174749 Acidimicrobium ferrooxidans DSM 10331 8322219 YP_003108809.1 CDS Afer_0167 NC_013124.1 174746 175714 D Catalyzes a reaction in which the CO2 acceptor molecule, RuBP, is generated via the phosphorylation of ribulose 5-phosphate with ATP; phosphoribulokinase 174746..175714 Acidimicrobium ferrooxidans DSM 10331 8322220 YP_003108810.1 CDS Afer_0168 NC_013124.1 175731 176504 R PFAM: MgtC/SapB transporter; KEGG: cyb:CYB_2116 MgtC family protein; MgtC/SapB transporter complement(175731..176504) Acidimicrobium ferrooxidans DSM 10331 8322221 YP_003108811.1 CDS Afer_0169 NC_013124.1 176834 177967 D KEGG: sgr:SGR_2421 LacI family transcriptional regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; LacI family transcriptional regulator 176834..177967 Acidimicrobium ferrooxidans DSM 10331 8322222 YP_003108812.1 CDS Afer_0170 NC_013124.1 177964 179799 D PFAM: glycoside hydrolase family 39; KEGG: xca:xccb100_4166 exported xylan 1,4-beta- xylosidase; Xylan 1,4-beta-xylosidase 177964..179799 Acidimicrobium ferrooxidans DSM 10331 8322223 YP_003108813.1 CDS Afer_0171 NC_013124.1 179952 181574 D PFAM: extracellular solute-binding protein family 5; KEGG: lxx:Lxx23050 ABC transporter, substrate binding protein; family 5 extracellular solute-binding protein 179952..181574 Acidimicrobium ferrooxidans DSM 10331 8322224 YP_003108814.1 CDS Afer_0172 NC_013124.1 181635 182615 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mxa:MXAN_6552 oligopeptide/dipeptide ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 181635..182615 Acidimicrobium ferrooxidans DSM 10331 8322225 YP_003108815.1 CDS Afer_0173 NC_013124.1 182612 183541 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lxx:Lxx23070 ABC transporter, permease protein; binding-protein-dependent transport systems inner membrane component 182612..183541 Acidimicrobium ferrooxidans DSM 10331 8322226 YP_003108816.1 CDS Afer_0174 NC_013124.1 183538 184509 D KEGG: reh:H16_A1303 ABC-type transporter, ATPase component: PepT family; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase subunit 183538..184509 Acidimicrobium ferrooxidans DSM 10331 8322227 YP_003108817.1 CDS Afer_0175 NC_013124.1 184506 185306 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mxa:MXAN_6554 oligopeptide/dipeptide ABC transporter, ATP-binding protein; ABC transporter-like protein 184506..185306 Acidimicrobium ferrooxidans DSM 10331 8322228 YP_003108818.1 CDS Afer_0176 NC_013124.1 185338 186249 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bph:Bphy_1827 LysR family transcriptional regulator; LysR family transcriptional regulator 185338..186249 Acidimicrobium ferrooxidans DSM 10331 8322229 YP_003108819.1 CDS Afer_0177 NC_013124.1 186361 187344 D PFAM: fructose-bisphosphate aldolase class-I; KEGG: ter:Tery_1687 fructose-bisphosphate aldolase; Fructose-bisphosphate aldolase 186361..187344 Acidimicrobium ferrooxidans DSM 10331 8322230 YP_003108820.1 CDS Afer_0178 NC_013124.1 187378 187575 D hypothetical protein 187378..187575 Acidimicrobium ferrooxidans DSM 10331 8322231 YP_003108821.1 CDS Afer_0179 NC_013124.1 187559 187810 D PFAM: thiamineS protein; KEGG: afw:Anae109_1160 molybdopterin converting factor, subunit 1; sulfur transfer protein ThiS 187559..187810 Acidimicrobium ferrooxidans DSM 10331 8322232 YP_003108822.1 CDS Afer_0180 NC_013124.1 187810 188460 D PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: mva:Mvan_1358 two component LuxR family transcriptional regulator; LuxR family two component transcriptional regulator 187810..188460 Acidimicrobium ferrooxidans DSM 10331 8322233 YP_003108823.1 CDS Afer_0181 NC_013124.1 188457 189623 D PFAM: ATP-binding region ATPase domain protein; GAF domain protein; histidine kinase dimerization and phosphoacceptor region; SMART: GAF domain protein; ATP-binding region ATPase domain protein; KEGG: mkm:Mkms_1071 GAF sensor signal transduction histidine kinase; GAF sensor signal transduction histidine kinase 188457..189623 Acidimicrobium ferrooxidans DSM 10331 8322234 YP_003108824.1 CDS Afer_0182 NC_013124.1 189674 190645 D KEGG: dge:Dgeo_2370 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 189674..190645 Acidimicrobium ferrooxidans DSM 10331 8322235 YP_003108825.1 CDS Afer_0183 NC_013124.1 190753 191730 D PFAM: Transglycosylase domain protein; KEGG: fre:Franean1_0215 transglycosylase domain- containing protein; transglycosylase domain-containing protein 190753..191730 Acidimicrobium ferrooxidans DSM 10331 8322236 YP_003108826.1 CDS Afer_0184 NC_013124.1 191863 192150 R KEGG: ace:Acel_1424 hypothetical protein; hypothetical protein complement(191863..192150) Acidimicrobium ferrooxidans DSM 10331 8322237 YP_003108827.1 CDS Afer_0185 NC_013124.1 192153 192893 R PFAM: dienelactone hydrolase; KEGG: ace:Acel_1423 carboxymethylenebutenolidase; dienelactone hydrolase complement(192153..192893) Acidimicrobium ferrooxidans DSM 10331 8322238 YP_003108828.1 CDS Afer_0186 NC_013124.1 193043 193543 R PFAM: GCN5-related N-acetyltransferase; KEGG: cvi:CV_3058 hypothetical protein; GCN5-like N-acetyltransferase complement(193043..193543) Acidimicrobium ferrooxidans DSM 10331 8322239 YP_003108829.1 CDS Afer_0187 NC_013124.1 193553 193930 R KEGG: fra:Francci3_0680 succinate dehydrogenase subunit D; succinate dehydrogenase subunit D complement(193553..193930) Acidimicrobium ferrooxidans DSM 10331 8322240 YP_003108830.1 CDS Afer_0188 NC_013124.1 193932 194348 R TIGRFAM: succinate dehydrogenase, cytochrome b556 subunit; PFAM: succinate dehydrogenase cytochrome b subunit; KEGG: kra:Krad_3952 succinate dehydrogenase cytochrome b556 subunit; succinate dehydrogenase, cytochrome b556 subunit complement(193932..194348) Acidimicrobium ferrooxidans DSM 10331 8322241 YP_003108831.1 CDS Afer_0189 NC_013124.1 194345 194491 R hypothetical protein complement(194345..194491) Acidimicrobium ferrooxidans DSM 10331 8322242 YP_003108832.1 CDS Afer_0190 NC_013124.1 194661 195977 R KEGG: gtn:GTNG_0013 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like; seryl-tRNA synthetase complement(194661..195977) Acidimicrobium ferrooxidans DSM 10331 8322243 YP_003108833.1 CDS Afer_0191 NC_013124.1 196000 196917 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tfu:Tfu_1989 ABC-type multidrug transport system ATPase componen; ABC transporter-like protein 196000..196917 Acidimicrobium ferrooxidans DSM 10331 8322244 YP_003108834.1 CDS Afer_0192 NC_013124.1 196914 197648 D PFAM: ABC-2 type transporter; KEGG: fre:Franean1_2079 ABC-2 type transporter; ABC-2 type transporter 196914..197648 Acidimicrobium ferrooxidans DSM 10331 8322245 YP_003108835.1 CDS Afer_0193 NC_013124.1 197694 198659 D PFAM: cytochrome oxidase assembly; KEGG: fra:Francci3_1653 cytochrome oxidase assembly; cytochrome oxidase assembly 197694..198659 Acidimicrobium ferrooxidans DSM 10331 8322246 YP_003108836.1 CDS Afer_0194 NC_013124.1 198714 199004 D PFAM: ATP-dependent Clp protease adaptor protein ClpS; KEGG: rha:RHA1_ro01441 ATP-dependent Clp protease adaptor protein ClpS; ATP-dependent Clp protease adaptor protein ClpS 198714..199004 Acidimicrobium ferrooxidans DSM 10331 8322247 YP_003108837.1 CDS Afer_0195 NC_013124.1 199001 199426 D hypothetical protein 199001..199426 Acidimicrobium ferrooxidans DSM 10331 8322248 YP_003108838.1 CDS Afer_0196 NC_013124.1 199581 201668 R PFAM: Peptidase S53 propeptide; KEGG: cac:CAC0625 periplasmic aspartyl protease; peptidase S53 propeptide complement(199581..201668) Acidimicrobium ferrooxidans DSM 10331 8322249 YP_003108839.1 CDS Afer_0197 NC_013124.1 202283 203239 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: tth:TTC1833 quinone oxidoreductase; alcohol dehydrogenase zinc-binding domain-containing protein complement(202283..203239) Acidimicrobium ferrooxidans DSM 10331 8322250 YP_003108840.1 CDS Afer_0198 NC_013124.1 203307 204533 D PFAM: FAD dependent oxidoreductase; KEGG: tfu:Tfu_2797 D-amino-acid dehydrogenase; FAD dependent oxidoreductase 203307..204533 Acidimicrobium ferrooxidans DSM 10331 8322251 YP_003108841.1 CDS Afer_0199 NC_013124.1 204597 205049 R PFAM: ferric-uptake regulator; KEGG: fra:Francci3_2661 ferric uptake regulator family protein; Fur family ferric uptake regulator complement(204597..205049) Acidimicrobium ferrooxidans DSM 10331 8322252 YP_003108842.1 CDS Afer_0200 NC_013124.1 205042 205770 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: mab:MAB_4047c sensory transduction protein RegX3; winged helix family two component transcriptional regulator complement(205042..205770) Acidimicrobium ferrooxidans DSM 10331 8322253 YP_003108843.1 CDS Afer_0201 NC_013124.1 205760 206803 R KEGG: tfu:Tfu_2909 sensor histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase complement(205760..206803) Acidimicrobium ferrooxidans DSM 10331 8322254 YP_003108844.1 CDS Afer_0202 NC_013124.1 206934 207227 D KEGG: fra:Francci3_0038 hypothetical protein; hypothetical protein 206934..207227 Acidimicrobium ferrooxidans DSM 10331 8322255 YP_003108845.1 CDS Afer_0203 NC_013124.1 207231 208286 D KEGG: sgr:SGR_3918 integral membrane protein; hypothetical protein 207231..208286 Acidimicrobium ferrooxidans DSM 10331 8322256 YP_003108846.1 CDS Afer_0204 NC_013124.1 208283 209482 D KEGG: fre:Franean1_1340 hypothetical protein; hypothetical protein 208283..209482 Acidimicrobium ferrooxidans DSM 10331 8322257 YP_003108847.1 CDS Afer_0205 NC_013124.1 209473 210630 D SMART: AAA ATPase; KEGG: sco:SCO6878 ATP-binding protein; AAA ATPase 209473..210630 Acidimicrobium ferrooxidans DSM 10331 8322258 YP_003108848.1 CDS Afer_0206 NC_013124.1 210627 211787 D KEGG: fre:Franean1_1381 type IV secretory pathway VirD4 protein-like protein; type IV secretory pathway VirD4 protein 210627..211787 Acidimicrobium ferrooxidans DSM 10331 8322259 YP_003108849.1 CDS Afer_0207 NC_013124.1 211818 212171 D hypothetical protein 211818..212171 Acidimicrobium ferrooxidans DSM 10331 8322260 YP_003108850.1 CDS Afer_0208 NC_013124.1 212168 213556 D TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: ace:Acel_0832 flagellar hook-associated protein FlgK; flagellar hook-associated protein FlgK 212168..213556 Acidimicrobium ferrooxidans DSM 10331 8322261 YP_003108851.1 CDS Afer_0209 NC_013124.1 213565 214470 D KEGG: ace:Acel_0831 flagellar hook-associated protein 3; flagellar hook-associated protein 3 213565..214470 Acidimicrobium ferrooxidans DSM 10331 8322262 YP_003108852.1 CDS Afer_0210 NC_013124.1 214508 214978 D PFAM: protein of unknown function DUF180; KEGG: tte:TTE0497 flagellar assembly protein FliW; hypothetical protein 214508..214978 Acidimicrobium ferrooxidans DSM 10331 8322263 YP_003108853.1 CDS Afer_0211 NC_013124.1 215345 215587 R TIGRFAM: carbon storage regulator; PFAM: carbon storage regulator; KEGG: hmo:HM1_1209 carbon storage regulator; carbon storage regulator CsrA complement(215345..215587) Acidimicrobium ferrooxidans DSM 10331 8322264 YP_003108854.1 CDS Afer_0212 NC_013124.1 215819 218005 D PFAM: ATP-binding region ATPase domain protein; CheW domain protein; Signal transducing histidine kinase homodimeric; Hpt domain protein; SMART: CheW domain protein; ATP-binding region ATPase domain protein; Hpt domain protein; KEGG: aba:Acid345_1524 CheA signal transduction histidine kinases; CheA signal transduction histidine kinase 215819..218005 Acidimicrobium ferrooxidans DSM 10331 8322265 YP_003108855.1 CDS Afer_0213 NC_013124.1 217998 218423 D PFAM: CheW domain protein; SMART: CheW domain protein; KEGG: kra:Krad_0315 CheW protein; CheW protein 217998..218423 Acidimicrobium ferrooxidans DSM 10331 8322266 YP_003108856.1 CDS Afer_0214 NC_013124.1 218420 219604 D KEGG: nca:Noca_3599 response regulator receiver modulated CheB methylesterase; PFAM: CheB methylesterase; response regulator receiver; SMART: response regulator receiver; response regulator receiver modulated CheB methylesterase 218420..219604 Acidimicrobium ferrooxidans DSM 10331 8322267 YP_003108857.1 CDS Afer_0215 NC_013124.1 219604 220488 D KEGG: bbt:BBta_0527 MCP methyltransferase, CheR- type; PFAM: MCP methyltransferase CheR-type; SMART: MCP methyltransferase CheR-type; CheR-type MCP methyltransferase 219604..220488 Acidimicrobium ferrooxidans DSM 10331 8322268 YP_003108858.1 CDS Afer_0216 NC_013124.1 220475 221347 D PFAM: regulatory protein GntR HTH; GntR domain protein; SMART: regulatory protein GntR HTH; KEGG: dau:Daud_0059 GntR family transcriptional regulator; GntR family transcriptional regulator 220475..221347 Acidimicrobium ferrooxidans DSM 10331 8322269 YP_003108859.1 CDS Afer_0217 NC_013124.1 221423 221791 D PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: kra:Krad_0325 response regulator receiver protein; response regulator receiver protein 221423..221791 Acidimicrobium ferrooxidans DSM 10331 8322270 YP_003108860.1 CDS Afer_0218 NC_013124.1 221788 222276 D KEGG: bvi:Bcep1808_5226 protease Do; hypothetical protein 221788..222276 Acidimicrobium ferrooxidans DSM 10331 8322271 YP_003108861.1 CDS Afer_0219 NC_013124.1 222273 222773 D KEGG: kra:Krad_0325 response regulator receiver protein; response regulator receiver protein 222273..222773 Acidimicrobium ferrooxidans DSM 10331 8322272 YP_003108862.1 CDS Afer_0220 NC_013124.1 222773 224599 D PFAM: glycosyl transferase family 2; KEGG: ank:AnaeK_2521 glycosyl transferase family 2; family 2 glycosyl transferase 222773..224599 Acidimicrobium ferrooxidans DSM 10331 8322273 YP_003108863.1 CDS Afer_0221 NC_013124.1 225108 225797 R PFAM: peptidase S51 dipeptidase E; KEGG: cbe:Cbei_0392 cyanophycinase; peptidase S51 dipeptidase E complement(225108..225797) Acidimicrobium ferrooxidans DSM 10331 8322274 YP_003108864.1 CDS Afer_0222 NC_013124.1 225888 226757 D PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: fre:Franean1_1037 3-hydroxybutyryl-CoA dehydrogenase, 3-hydroxyacyl-CoA dehydrogenase; NAD-binding 3-hydroxyacyl-CoA dehydrogenase 225888..226757 Acidimicrobium ferrooxidans DSM 10331 8322275 YP_003108865.1 CDS Afer_0223 NC_013124.1 226754 228697 D KEGG: saq:Sare_4003 methylmalonyl-CoA mutase, large subunit; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; cobalamin B12- binding domain protein; methylmalonyl-CoA mutase, large subunit 226754..228697 Acidimicrobium ferrooxidans DSM 10331 8322276 YP_003108866.1 CDS Afer_0224 NC_013124.1 228734 229483 D KEGG: xca:xccb100_3008 sensor protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 228734..229483 Acidimicrobium ferrooxidans DSM 10331 8322277 YP_003108867.1 CDS Afer_0225 NC_013124.1 229554 230066 D PFAM: shikimate kinase; KEGG: tfu:Tfu_1091 shikimate kinase; Shikimate kinase 229554..230066 Acidimicrobium ferrooxidans DSM 10331 8322278 YP_003108868.1 CDS Afer_0226 NC_013124.1 230035 230463 R PFAM: Vitamin K epoxide reductase; SMART: Vitamin K epoxide reductase; KEGG: ace:Acel_2066 vitamin K epoxide reductase; Vitamin K epoxide reductase complement(230035..230463) Acidimicrobium ferrooxidans DSM 10331 8322279 YP_003108869.1 CDS Afer_0227 NC_013124.1 230481 231332 R PFAM: protein of unknown function DUF929; KEGG: ace:Acel_2067 hypothetical protein; hypothetical protein complement(230481..231332) Acidimicrobium ferrooxidans DSM 10331 8322280 YP_003108870.1 CDS Afer_0228 NC_013124.1 231475 231933 D PFAM: Endoribonuclease L-PSP; KEGG: dau:Daud_1470 endoribonuclease L-PSP; Endoribonuclease L-PSP 231475..231933 Acidimicrobium ferrooxidans DSM 10331 8322281 YP_003108871.1 CDS Afer_0229 NC_013124.1 231930 232835 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: sma:SAV_7066 integral membrane protein; hypothetical protein complement(231930..232835) Acidimicrobium ferrooxidans DSM 10331 8322282 YP_003108872.1 CDS Afer_0230 NC_013124.1 232925 233539 D PFAM: BioY protein; KEGG: saq:Sare_4638 BioY protein; BioY protein 232925..233539 Acidimicrobium ferrooxidans DSM 10331 8322283 YP_003108873.1 CDS Afer_0231 NC_013124.1 233536 235092 D PFAM: carboxyl transferase; KEGG: rca:Rcas_4102 carboxyl transferase; carboxyl transferase 233536..235092 Acidimicrobium ferrooxidans DSM 10331 8322284 YP_003108874.1 CDS Afer_0232 NC_013124.1 235305 236723 D PFAM: Amidase; KEGG: mxa:MXAN_6372 6-aminohexanoate-cyclic-dimer hydrolase; Amidase 235305..236723 Acidimicrobium ferrooxidans DSM 10331 8322285 YP_003108875.1 CDS Afer_0233 NC_013124.1 236735 238144 D PFAM: peptidase M20; peptidase dimerization domain protein; KEGG: mxa:MXAN_0543 peptidase, M20 (glutamate carboxypeptidase) family; peptidase M20 236735..238144 Acidimicrobium ferrooxidans DSM 10331 8322286 YP_003108876.1 CDS Afer_0234 NC_013124.1 238129 239235 R PFAM: protein of unknown function DUF59; KEGG: nca:Noca_2935 hypothetical protein; hypothetical protein complement(238129..239235) Acidimicrobium ferrooxidans DSM 10331 8322287 YP_003108877.1 CDS Afer_0235 NC_013124.1 239232 240014 R PFAM: NUDIX hydrolase; KEGG: maq:Maqu_3801 beta-lactamase domain- containing protein; NUDIX hydrolase complement(239232..240014) Acidimicrobium ferrooxidans DSM 10331 8322288 YP_003108878.1 CDS Afer_0236 NC_013124.1 240137 240607 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: bur:Bcep18194_B3050 two component transcriptional regulator; response regulator receiver protein complement(240137..240607) Acidimicrobium ferrooxidans DSM 10331 8322290 YP_003108879.1 CDS Afer_0237 NC_013124.1 240620 241681 R PFAM: Anion-transporting ATPase; KEGG: rha:RHA1_ro04317 arsenate (2+)-transporting ATPase; Anion-transporting ATPase complement(240620..241681) Acidimicrobium ferrooxidans DSM 10331 8322291 YP_003108880.1 CDS Afer_0238 NC_013124.1 241678 242529 R PFAM: Anion-transporting ATPase; KEGG: ank:AnaeK_0988 chromosome partitioning-like ATPase; Anion-transporting ATPase complement(241678..242529) Acidimicrobium ferrooxidans DSM 10331 8322292 YP_003108881.1 CDS Afer_0239 NC_013124.1 243093 243365 D PFAM: transcription factor WhiB; KEGG: fal:FRAAL1135 WhiB family cell cycle control transcriptional regulator; transcription factor WhiB 243093..243365 Acidimicrobium ferrooxidans DSM 10331 8322293 YP_003108882.1 CDS Afer_0240 NC_013124.1 243450 243812 D TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; KEGG: cja:CJA_0888 HesB/YadR/YfhF family protein; iron-sulfur cluster assembly accessory protein 243450..243812 Acidimicrobium ferrooxidans DSM 10331 8322294 YP_003108883.1 CDS Afer_0241 NC_013124.1 244047 244700 R PFAM: transcriptional regulator domain protein; KEGG: sma:SAV_4042 two-component system response regulator; winged helix family two component transcriptional regulator complement(244047..244700) Acidimicrobium ferrooxidans DSM 10331 8322295 YP_003108884.1 CDS Afer_0242 NC_013124.1 244702 246045 R PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: sat:SYN_01628 glutamine synthetase; glutamine synthetase catalytic subunit complement(244702..246045) Acidimicrobium ferrooxidans DSM 10331 8322296 YP_003108885.1 CDS Afer_0243 NC_013124.1 246195 247622 D TIGRFAM: glutamine synthetase, type I; PFAM: glutamine synthetase catalytic region; glutamine synthetase beta-Grasp; KEGG: fre:Franean1_1770 glutamine synthetase, type I; glutamine synthetase, type I 246195..247622 Acidimicrobium ferrooxidans DSM 10331 8322297 YP_003108886.1 CDS Afer_0244 NC_013124.1 247758 248327 R KEGG: kra:Krad_4317 hypothetical protein; hypothetical protein complement(247758..248327) Acidimicrobium ferrooxidans DSM 10331 8322298 YP_003108887.1 CDS Afer_0245 NC_013124.1 248321 249601 R KEGG: bwe:BcerKBAB4_1354 peptidase M23B; hypothetical protein complement(248321..249601) Acidimicrobium ferrooxidans DSM 10331 8322299 YP_003108888.1 CDS Afer_0246 NC_013124.1 249903 251618 D KEGG: rxy:Rxyl_2763 NH(3)-dependent NAD(+) synthetase; TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; NAD+ synthetase 249903..251618 Acidimicrobium ferrooxidans DSM 10331 8322300 YP_003108889.1 CDS Afer_0247 NC_013124.1 251615 252133 D hypothetical protein 251615..252133 Acidimicrobium ferrooxidans DSM 10331 8322301 YP_003108890.1 CDS Afer_0248 NC_013124.1 252139 253152 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: fra:Francci3_1283 sigma 38; RpoD subfamily RNA polymerase sigma-70 subunit 252139..253152 Acidimicrobium ferrooxidans DSM 10331 8322302 YP_003108891.1 CDS Afer_0249 NC_013124.1 253783 255015 D KEGG: mxa:MXAN_2655 glutamyl-tRNA reductase; TIGRFAM: glutamyl-tRNA reductase; PFAM: Tetrapyrrole biosynthesis, glutamyl-tRNA reductase-like; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; Shikimate/quinate 5- dehydrogenase; glutamyl-tRNA reductase 253783..255015 Acidimicrobium ferrooxidans DSM 10331 8322303 YP_003108892.1 CDS Afer_0250 NC_013124.1 255015 255890 D KEGG: ace:Acel_0237 hydroxymethylbilane synthase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase; porphobilinogen deaminase 255015..255890 Acidimicrobium ferrooxidans DSM 10331 8322304 YP_003108893.1 CDS Afer_0251 NC_013124.1 255890 257362 D TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: sus:Acid_3181 uroporphyrinogen-III C- methyltransferase / uroporphyrinogen-III synthase; uroporphyrin-III C-methyltransferase 255890..257362 Acidimicrobium ferrooxidans DSM 10331 8322305 YP_003108894.1 CDS Afer_0252 NC_013124.1 257373 258350 D PFAM: delta-aminolevulinic acid dehydratase; KEGG: krh:KRH_08550 delta-aminolevulinic acid dehydratase; Porphobilinogen synthase 257373..258350 Acidimicrobium ferrooxidans DSM 10331 8322306 YP_003108895.1 CDS Afer_0253 NC_013124.1 258338 259630 D TIGRFAM: glutamate-1-semialdehyde-2,1-aminomutase; PFAM: aminotransferase class-III; KEGG: dol:Dole_1545 glutamate-1-semialdehyde-2,1- aminomutase; glutamate-1-semialdehyde-2,1-aminomutase 258338..259630 Acidimicrobium ferrooxidans DSM 10331 8322307 YP_003108896.1 CDS Afer_0254 NC_013124.1 259662 261050 R PFAM: Chloride channel core; KEGG: bvi:Bcep1808_4875 Cl-channel, voltage-gated family protein; Chloride channel core complement(259662..261050) Acidimicrobium ferrooxidans DSM 10331 8322308 YP_003108897.1 CDS Afer_0255 NC_013124.1 261313 262206 R TIGRFAM: naphthoate synthase; PFAM: Enoyl-CoA hydratase/isomerase; KEGG: swd:Swoo_4886 naphthoate synthase; naphthoate synthase complement(261313..262206) Acidimicrobium ferrooxidans DSM 10331 8322309 YP_003108898.1 CDS Afer_0256 NC_013124.1 262397 263275 D PFAM: metallophosphoesterase; KEGG: pzu:PHZ_c0307 3',5'-cyclic-nucleotide phosphodiesterase; metallophosphoesterase 262397..263275 Acidimicrobium ferrooxidans DSM 10331 8322310 YP_003108899.1 CDS Afer_0257 NC_013124.1 263394 264182 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; Male sterility domain; KEGG: sru:SRU_2037 short chain dehydrogenase/reductase family oxidoreductase; short-chain dehydrogenase/reductase SDR 263394..264182 Acidimicrobium ferrooxidans DSM 10331 8322311 YP_003108900.1 CDS Afer_0258 NC_013124.1 264161 264883 R KEGG: cef:CE1107 hypothetical protein; hypothetical protein complement(264161..264883) Acidimicrobium ferrooxidans DSM 10331 8322312 YP_003108901.1 CDS Afer_0259 NC_013124.1 264844 265347 R KEGG: kra:Krad_1834 hypothetical protein; hypothetical protein complement(264844..265347) Acidimicrobium ferrooxidans DSM 10331 8322313 YP_003108902.1 CDS Afer_0260 NC_013124.1 265344 265967 R PFAM: Phosphoglycerate mutase; KEGG: cgt:cgR_1141 hypothetical protein; phosphoglycerate mutase complement(265344..265967) Acidimicrobium ferrooxidans DSM 10331 8322314 YP_003108903.1 CDS Afer_0261 NC_013124.1 266046 267218 R TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: tfu:Tfu_0436 acetyl-CoA acetyltransferase; acetyl-CoA acetyltransferase complement(266046..267218) Acidimicrobium ferrooxidans DSM 10331 8322315 YP_003108904.1 CDS Afer_0262 NC_013124.1 267215 267718 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: saq:Sare_1005 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen complement(267215..267718) Acidimicrobium ferrooxidans DSM 10331 8322316 YP_003108905.1 CDS Afer_0263 NC_013124.1 267792 268178 D hypothetical protein 267792..268178 Acidimicrobium ferrooxidans DSM 10331 8322317 YP_003108906.1 CDS Afer_0264 NC_013124.1 268205 268927 D PFAM: LmbE family protein; KEGG: ace:Acel_0374 LmbE family protein; LmbE family protein 268205..268927 Acidimicrobium ferrooxidans DSM 10331 8322318 YP_003108907.1 CDS Afer_0265 NC_013124.1 269215 270252 D PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: sma:SAV_6448 alcohol dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 269215..270252 Acidimicrobium ferrooxidans DSM 10331 8322319 YP_003108908.1 CDS Afer_0266 NC_013124.1 270316 271350 D PFAM: aldo/keto reductase; KEGG: fre:Franean1_4232 aldo/keto reductase; aldo/keto reductase 270316..271350 Acidimicrobium ferrooxidans DSM 10331 8322320 YP_003108909.1 CDS Afer_0267 NC_013124.1 271559 272221 R PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: sen:SACE_4714 6-O-methylguanine DNA methyltransferase; type 11 methyltransferase complement(271559..272221) Acidimicrobium ferrooxidans DSM 10331 8322321 YP_003108910.1 CDS Afer_0268 NC_013124.1 272437 272880 D hypothetical protein 272437..272880 Acidimicrobium ferrooxidans DSM 10331 8322322 YP_003108911.1 CDS Afer_0269 NC_013124.1 272964 273959 D PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: rxy:Rxyl_0463 pyridoxal-5'-phosphate- dependent enzyme, beta subunit; Pyridoxal-5'-phosphate-dependent protein beta subunit 272964..273959 Acidimicrobium ferrooxidans DSM 10331 8322323 YP_003108912.1 CDS Afer_0270 NC_013124.1 273928 275808 R PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: hau:Haur_0337 ABC transporter related; ABC transporter-like protein complement(273928..275808) Acidimicrobium ferrooxidans DSM 10331 8322324 YP_003108913.1 CDS Afer_0271 NC_013124.1 275883 276584 D TIGRFAM: cob(II)yrinic acid a,c-diamide reductase; PFAM: nitroreductase; KEGG: fal:FRAAL4424 reductase; cob(II)yrinic acid a,c-diamide reductase 275883..276584 Acidimicrobium ferrooxidans DSM 10331 8322325 YP_003108914.1 CDS Afer_0272 NC_013124.1 276607 281163 R PFAM: NAD-glutamate dehydrogenase; KEGG: ace:Acel_1749 glutamate dehydrogenase (NAD); NAD-glutamate dehydrogenase complement(276607..281163) Acidimicrobium ferrooxidans DSM 10331 8322326 YP_003108915.1 CDS Afer_0273 NC_013124.1 281358 282311 R TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: nca:Noca_3382 agmatinase; agmatinase complement(281358..282311) Acidimicrobium ferrooxidans DSM 10331 8322327 YP_003108916.1 CDS Afer_0274 NC_013124.1 282415 283032 D PFAM: Cupin 2 conserved barrel domain protein; helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: art:Arth_0847 XRE family transcriptional regulator with cupin sensor; XRE family transcriptional regulator 282415..283032 Acidimicrobium ferrooxidans DSM 10331 8322328 YP_003108917.1 CDS Afer_0275 NC_013124.1 283067 283417 D hypothetical protein 283067..283417 Acidimicrobium ferrooxidans DSM 10331 8322329 YP_003108918.1 CDS Afer_0276 NC_013124.1 283417 284100 D PFAM: protein of unknown function DUF1614; KEGG: bbt:BBta_0662 hypothetical protein; hypothetical protein 283417..284100 Acidimicrobium ferrooxidans DSM 10331 8322330 YP_003108919.1 CDS Afer_0277 NC_013124.1 284224 285093 R PFAM: Integrase catalytic region; KEGG: mva:Mvan_5060 integrase catalytic subunit; integrase catalytic subunit complement(284224..285093) Acidimicrobium ferrooxidans DSM 10331 8322331 YP_003108920.1 CDS Afer_0278 NC_013124.1 285093 285413 R PFAM: transposase IS3/IS911 family protein; KEGG: mva:Mvan_5059 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(285093..285413) Acidimicrobium ferrooxidans DSM 10331 8322332 YP_003108921.1 CDS Afer_0279 NC_013124.1 285555 286163 D KEGG: ace:Acel_0517 hypothetical protein; hypothetical protein 285555..286163 Acidimicrobium ferrooxidans DSM 10331 8322333 YP_003108922.1 CDS Afer_0280 NC_013124.1 286409 289279 D KEGG: spn:SP_1772 cell wall surface anchor family protein; hypothetical protein 286409..289279 Acidimicrobium ferrooxidans DSM 10331 8322334 YP_003108923.1 CDS Afer_0281 NC_013124.1 289279 289737 D KEGG: pcr:Pcryo_2115 hypothetical protein; hypothetical protein 289279..289737 Acidimicrobium ferrooxidans DSM 10331 8322335 YP_003108924.1 CDS Afer_0282 NC_013124.1 290076 290981 D KEGG: rha:RHA1_ro01864 mycothiol-dependent maleylpyruvate isomerase; hypothetical protein 290076..290981 Acidimicrobium ferrooxidans DSM 10331 8322336 YP_003108925.1 CDS Afer_0283 NC_013124.1 291194 291706 D KEGG: mab:MAB_2457c hypothetical protein; hypothetical protein 291194..291706 Acidimicrobium ferrooxidans DSM 10331 8322337 YP_003108926.1 CDS Afer_0284 NC_013124.1 291949 294183 R PFAM: protein of unknown function DUF893 YccS/YhfK; KEGG: sus:Acid_4391 protein of unknown function DUF893, YccS/YhfK; hypothetical protein complement(291949..294183) Acidimicrobium ferrooxidans DSM 10331 8322339 YP_003108927.1 CDS Afer_0285 NC_013124.1 294180 294821 R TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: rha:RHA1_ro02330 methylated-DNA--[protein]- cysteine S-methyltransferase; methylated-DNA/protein- cysteinemethyltransferase complement(294180..294821) Acidimicrobium ferrooxidans DSM 10331 8322340 YP_003108928.1 CDS Afer_0286 NC_013124.1 295176 296579 D PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; type III restriction protein res subunit; SMART: DEAD-like helicases ; helicase domain protein; KEGG: pac:PPA1787 ATP-dependent RNA helicase; DEAD/DEAH box helicase domain-containing protein 295176..296579 Acidimicrobium ferrooxidans DSM 10331 8322341 YP_003108929.1 CDS Afer_0287 NC_013124.1 296576 297271 R PFAM: Negative transcriptional regulator; KEGG: sen:SACE_2130 hypothetical protein; FMN-binding negative transcriptional regulator complement(296576..297271) Acidimicrobium ferrooxidans DSM 10331 8322342 YP_003108930.1 CDS Afer_0288 NC_013124.1 297468 298355 D KEGG: hypothetical protein; hypothetical protein 297468..298355 Acidimicrobium ferrooxidans DSM 10331 8322343 YP_003108931.1 CDS Afer_0289 NC_013124.1 298440 299213 D Catalyzes the reversible hydration of unsaturated fatty acyl-CoA to beta-hydroxyacyl-CoA; enoyl-CoA hydratase 298440..299213 Acidimicrobium ferrooxidans DSM 10331 8322344 YP_003108932.1 CDS Afer_0290 NC_013124.1 299207 299686 R PFAM: UspA domain protein; KEGG: sen:SACE_3386 universal stress protein; UspA domain-containing protein complement(299207..299686) Acidimicrobium ferrooxidans DSM 10331 8322345 YP_003108933.1 CDS Afer_0291 NC_013124.1 299691 302129 R TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; cation transporting ATPase domain protein; KEGG: afe:Lferr_2687 ATPase, P-type (transporting), HAD superfamily, subfamily IC; P-type HAD superfamily ATPase complement(299691..302129) Acidimicrobium ferrooxidans DSM 10331 8322346 YP_003108934.1 CDS Afer_0292 NC_013124.1 302140 303051 R PFAM: UspA domain protein; KEGG: fal:FRAAL4243 stress-inducible protein; UspA domain-containing protein complement(302140..303051) Acidimicrobium ferrooxidans DSM 10331 8322347 YP_003108935.1 CDS Afer_0293 NC_013124.1 303159 304547 R Catalyzes the oxidation of dihydrolipoamide to lipoamide; dihydrolipoamide dehydrogenase complement(303159..304547) Acidimicrobium ferrooxidans DSM 10331 8322348 YP_003108936.1 CDS Afer_0294 NC_013124.1 304760 305272 D PFAM: ferric-uptake regulator; KEGG: nfa:nfa3250 ferric uptake regulator; Fur family ferric uptake regulator 304760..305272 Acidimicrobium ferrooxidans DSM 10331 8322349 YP_003108937.1 CDS Afer_0295 NC_013124.1 305260 307449 D TIGRFAM: catalase/peroxidase HPI; PFAM: Haem peroxidase; KEGG: rha:RHA1_ro05275 catalase; catalase/peroxidase HPI 305260..307449 Acidimicrobium ferrooxidans DSM 10331 8322350 YP_003108938.1 CDS Afer_0296 NC_013124.1 307584 308456 R PFAM: protein of unknown function DUF74; KEGG: afe:Lferr_1683 hypothetical protein; hypothetical protein complement(307584..308456) Acidimicrobium ferrooxidans DSM 10331 8322351 YP_003108939.1 CDS Afer_0297 NC_013124.1 308548 309819 D PFAM: major facilitator superfamily MFS_1; protein of unknown function DUF894 DitE; KEGG: sma:SAV_3894 integral membrane efflux protein; major facilitator superfamily protein 308548..309819 Acidimicrobium ferrooxidans DSM 10331 8322352 YP_003108940.1 CDS Afer_0298 NC_013124.1 309951 311264 R PFAM: NLP/P60 protein; KEGG: sgr:SGR_2734 NLP/P60 family secreted protein; NLP/P60 protein complement(309951..311264) Acidimicrobium ferrooxidans DSM 10331 8322353 YP_003108941.1 CDS Afer_0299 NC_013124.1 311574 312389 D KEGG: cyt:cce_4767 hypothetical protein; hypothetical protein 311574..312389 Acidimicrobium ferrooxidans DSM 10331 8322354 YP_003108942.1 CDS Afer_0300 NC_013124.1 312386 313198 R PFAM: ABC-2 type transporter; KEGG: mta:Moth_2298 daunorubicin resistance ABC transporter membrane protein; ABC-2 type transporter complement(312386..313198) Acidimicrobium ferrooxidans DSM 10331 8322355 YP_003108943.1 CDS Afer_0301 NC_013124.1 313217 314095 R PFAM: Integrase catalytic region; KEGG: amr:AM1_A0193 integrase, catalytic region; integrase catalytic subunit complement(313217..314095) Acidimicrobium ferrooxidans DSM 10331 8322356 YP_003108944.1 CDS Afer_0302 NC_013124.1 314092 314421 R PFAM: transposase IS3/IS911 family protein; KEGG: rxy:Rxyl_1861 transposase IS3/IS911; transposase IS3/IS911 family protein complement(314092..314421) Acidimicrobium ferrooxidans DSM 10331 8322357 YP_003108945.1 CDS Afer_0303 NC_013124.1 314418 314546 R hypothetical protein complement(314418..314546) Acidimicrobium ferrooxidans DSM 10331 8322358 YP_003108946.1 CDS Afer_0305 NC_013124.1 315670 316884 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: saq:Sare_0142 acyl-CoA dehydrogenase domain- containing protein; acyl-CoA dehydrogenase domain-containing protein complement(315670..316884) Acidimicrobium ferrooxidans DSM 10331 8322360 YP_003108947.1 CDS Afer_0306 NC_013124.1 316961 318301 R KEGG: hha:Hhal_0107 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR; cysteinyl-tRNA synthetase complement(316961..318301) Acidimicrobium ferrooxidans DSM 10331 8322361 YP_003108948.1 CDS valS NC_013124.1 318455 321022 D valine--tRNA ligase; ValRS; converts valine ATP and tRNA(Val) to AMP PPi and valyl-tRNA(Val); class-I aminoacyl-tRNA synthetase type 1 subfamily; has a posttransfer editing process to hydrolyze mischarged Thr-tRNA(Val) which is done by the editing domain; valyl-tRNA synthetase 318455..321022 Acidimicrobium ferrooxidans DSM 10331 8322362 YP_003108949.1 CDS Afer_0308 NC_013124.1 321048 322394 D KEGG: mav:MAV_4571 metal ion transporter, nramp family protein; metal ion transporter, nramp family protein 321048..322394 Acidimicrobium ferrooxidans DSM 10331 8322363 YP_003108950.1 CDS Afer_0309 NC_013124.1 322410 322790 R PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: tpe:Tpen_0466 regulatory protein, ArsR; ArsR family transcriptional regulator complement(322410..322790) Acidimicrobium ferrooxidans DSM 10331 8322364 YP_003108951.1 CDS Afer_0310 NC_013124.1 322801 324747 R SMART: von Willebrand factor A; KEGG: kra:Krad_1094 von Willebrand factor A; von Willebrand factor A complement(322801..324747) Acidimicrobium ferrooxidans DSM 10331 8322365 YP_003108952.1 CDS Afer_0311 NC_013124.1 324751 326133 R KEGG: fra:Francci3_3905 magnesium chelatase, ChlI subunit; magnesium chelatase, ChlI subunit complement(324751..326133) Acidimicrobium ferrooxidans DSM 10331 8322366 YP_003108953.1 CDS Afer_0312 NC_013124.1 326198 327955 D KEGG: sgr:SGR_2689 succinate dehydrogenase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; succinate dehydrogenase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; FAD dependent oxidoreductase; succinate dehydrogenase or fumarate reductase, flavoprotein subunit 326198..327955 Acidimicrobium ferrooxidans DSM 10331 8322367 YP_003108954.1 CDS Afer_0313 NC_013124.1 327955 328701 D TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; KEGG: fal:FRAAL1187 succinate dehydrogenase iron- sulfur subunit; succinate dehydrogenase and fumarate reductase iron-sulfur protein 327955..328701 Acidimicrobium ferrooxidans DSM 10331 8322368 YP_003108955.1 CDS Afer_0314 NC_013124.1 328676 328951 D hypothetical protein 328676..328951 Acidimicrobium ferrooxidans DSM 10331 8322369 YP_003108956.1 CDS Afer_0315 NC_013124.1 328955 329557 D KEGG: mva:Mvan_0765 hypothetical protein; hypothetical protein 328955..329557 Acidimicrobium ferrooxidans DSM 10331 8322370 YP_003108957.1 CDS Afer_0316 NC_013124.1 329629 329844 D hypothetical protein 329629..329844 Acidimicrobium ferrooxidans DSM 10331 8322371 YP_003108958.1 CDS Afer_0317 NC_013124.1 329951 330334 D PFAM: transcription factor WhiB; KEGG: ace:Acel_0457 transcription factor WhiB; transcription factor WhiB 329951..330334 Acidimicrobium ferrooxidans DSM 10331 8322372 YP_003108959.1 CDS Afer_0318 NC_013124.1 330385 330873 D PFAM: cobalamin B12-binding domain protein; KEGG: sgr:SGR_2730 isobutyryl-CoA mutase, chain B; cobalamin B12-binding domain-containing protein 330385..330873 Acidimicrobium ferrooxidans DSM 10331 8322373 YP_003108960.1 CDS Afer_0319 NC_013124.1 330876 332024 D KEGG: rxy:Rxyl_1276 succinyl-CoA synthetase (ADP- forming) beta subunit; TIGRFAM: succinyl-CoA synthetase, beta subunit; PFAM: ATP-grasp domain protein; ATP-citrate lyase/succinyl-CoA ligase; succinyl-CoA synthetase subunit beta 330876..332024 Acidimicrobium ferrooxidans DSM 10331 8322374 YP_003108961.1 CDS Afer_0320 NC_013124.1 332021 332908 D TIGRFAM: succinyl-CoA synthetase, alpha subunit; PFAM: ATP-citrate lyase/succinyl-CoA ligase; CoA- binding domain protein; KEGG: afw:Anae109_3723 succinyl-CoA synthetase, alpha subunit; succinyl-CoA synthetase subunit alpha 332021..332908 Acidimicrobium ferrooxidans DSM 10331 8322375 YP_003108962.1 CDS Afer_0321 NC_013124.1 332934 333572 D TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: LOC100083317; similar to glycinamide ribonucleotide formyltransferase ; K01945 phosphoribosylamine--glycine ligase; phosphoribosylglycinamide formyltransferase 332934..333572 Acidimicrobium ferrooxidans DSM 10331 8322376 YP_003108963.1 CDS Afer_0322 NC_013124.1 333557 335050 D KEGG: kra:Krad_3995 bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; PFAM: AICARFT/IMPCHase bienzyme formylation region; MGS domain protein; SMART: AICARFT/IMPCHase bienzyme formylation region; IMP cyclohydrolase 333557..335050 Acidimicrobium ferrooxidans DSM 10331 8322377 YP_003108964.1 CDS Afer_0323 NC_013124.1 335059 335928 D PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase; KEGG: tfu:Tfu_2571 methenyltetrahydrofolate cyclohydrolase; methenyltetrahydrofolate cyclohydrolase 335059..335928 Acidimicrobium ferrooxidans DSM 10331 8322378 YP_003108965.1 CDS Afer_0324 NC_013124.1 335925 336779 D PFAM: methylenetetrahydrofolate reductase; KEGG: ttj:TTHA0327 5,10-methylenetetrahydrofolate reductase; methylenetetrahydrofolate reductase (NAD(P)H) 335925..336779 Acidimicrobium ferrooxidans DSM 10331 8322379 YP_003108966.1 CDS Afer_0325 NC_013124.1 336915 338348 D PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: acr:Acry_3608 general substrate transporter; major facilitator superfamily protein 336915..338348 Acidimicrobium ferrooxidans DSM 10331 8322380 YP_003108967.1 CDS Afer_0326 NC_013124.1 338748 339341 D KEGG: nph:NP0440A homolog 3 to rad50 ATPase; hypothetical protein 338748..339341 Acidimicrobium ferrooxidans DSM 10331 8322381 YP_003108968.1 CDS Afer_0327 NC_013124.1 339515 339775 R hypothetical protein complement(339515..339775) Acidimicrobium ferrooxidans DSM 10331 8322382 YP_003108969.1 CDS Afer_0328 NC_013124.1 339913 340206 D PFAM: transcription factor WhiB; KEGG: bad:BAD_0659 WhiB-type transcription regulator; transcription factor WhiB 339913..340206 Acidimicrobium ferrooxidans DSM 10331 8322383 YP_003108970.1 CDS Afer_0329 NC_013124.1 340216 341022 D PFAM: Formiminotransferase domain protein; KEGG: sat:SYN_00461 glutamate formiminotransferase; Formiminotransferase domain-containing protein 340216..341022 Acidimicrobium ferrooxidans DSM 10331 8322384 YP_003108971.1 CDS Afer_0330 NC_013124.1 340976 341677 R PFAM: regulatory protein TetR; KEGG: rsa:RSal33209_1214 TetR family transcriptional regulator; TetR family transcriptional regulator complement(340976..341677) Acidimicrobium ferrooxidans DSM 10331 8322385 YP_003108972.1 CDS Afer_0331 NC_013124.1 341830 342798 D TIGRFAM: GDP-mannose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: rrs:RoseRS_3928 GDP-mannose 4,6-dehydratase; GDP-mannose 4,6-dehydratase 341830..342798 Acidimicrobium ferrooxidans DSM 10331 8322386 YP_003108973.1 CDS Afer_0332 NC_013124.1 342804 343457 D KEGG: nca:Noca_1952 ABC transporter related; TIGRFAM: heme exporter protein CcmA; PFAM: ABC transporter related; SMART: AAA ATPase; heme exporter protein CcmA 342804..343457 Acidimicrobium ferrooxidans DSM 10331 8322387 YP_003108974.1 CDS Afer_0333 NC_013124.1 343451 344116 D PFAM: cytochrome c-type biogenesis protein CcmB; ABC-2 type transporter; KEGG: nca:Noca_1953 cytochrome c-type biogenesis protein CcmB; cytochrome c-type biogenesis protein CcmB 343451..344116 Acidimicrobium ferrooxidans DSM 10331 8322388 YP_003108975.1 CDS Afer_0334 NC_013124.1 344120 344854 D PFAM: cytochrome c assembly protein; KEGG: nca:Noca_1955 cytochrome c assembly protein; cytochrome c assembly protein 344120..344854 Acidimicrobium ferrooxidans DSM 10331 8322389 YP_003108976.1 CDS Afer_0335 NC_013124.1 344851 344988 D hypothetical protein 344851..344988 Acidimicrobium ferrooxidans DSM 10331 8322390 YP_003108977.1 CDS Afer_0336 NC_013124.1 344981 345469 D KEGG: cak:Caul_3892 CcmE/CycJ protein; CcmE/CycJ protein 344981..345469 Acidimicrobium ferrooxidans DSM 10331 8322391 YP_003108978.1 CDS Afer_0337 NC_013124.1 345466 347448 D PFAM: cytochrome c assembly protein; KEGG: nca:Noca_1958 cytochrome c assembly protein; cytochrome c assembly protein 345466..347448 Acidimicrobium ferrooxidans DSM 10331 8322392 YP_003108979.1 CDS Afer_0338 NC_013124.1 347441 347983 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: mgm:Mmc1_3503 periplasmic protein thiol-- disulphide oxidoreductase DsbE; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen 347441..347983 Acidimicrobium ferrooxidans DSM 10331 8322393 YP_003108980.1 CDS Afer_0339 NC_013124.1 347980 349065 D PFAM: cytochrome C biogenesis protein; KEGG: eba:ebA3525 cytochrome c biogenesis protein; cytochrome C biogenesis protein 347980..349065 Acidimicrobium ferrooxidans DSM 10331 8322394 YP_003108981.1 CDS Afer_0340 NC_013124.1 349190 349807 D PFAM: oxidoreductase molybdopterin binding; KEGG: rca:Rcas_2793 oxidoreductase molybdopterin binding; molybdopterin binding oxidoreductase 349190..349807 Acidimicrobium ferrooxidans DSM 10331 8322395 YP_003108982.1 CDS Afer_0341 NC_013124.1 349948 351474 D PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: afe:Lferr_1484 major facilitator superfamily MFS_1; major facilitator superfamily protein 349948..351474 Acidimicrobium ferrooxidans DSM 10331 8322396 YP_003108983.1 CDS Afer_0342 NC_013124.1 351648 352238 R PFAM: response regulator receiver; regulatory protein LuxR; SMART: regulatory protein LuxR; response regulator receiver; KEGG: sco:SCO4072 LuxR family two component system response regulator; LuxR family two component transcriptional regulator complement(351648..352238) Acidimicrobium ferrooxidans DSM 10331 8322397 YP_003108984.1 CDS Afer_0343 NC_013124.1 352229 353302 R PFAM: ATP-binding region ATPase domain protein; KEGG: sco:SCO2307 two-component sensor kinase; signal transduction histidine kinase complement(352229..353302) Acidimicrobium ferrooxidans DSM 10331 8322398 YP_003108985.1 CDS Afer_0344 NC_013124.1 353299 354084 R PFAM: ABC-2 type transporter; KEGG: dra:DR_A0008 hypothetical protein; ABC-2 type transporter complement(353299..354084) Acidimicrobium ferrooxidans DSM 10331 8322399 YP_003108986.1 CDS Afer_0345 NC_013124.1 354081 354989 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sco:SCO2305 ABC transporter ATP-binding subunit; ABC transporter-like protein complement(354081..354989) Acidimicrobium ferrooxidans DSM 10331 8322400 YP_003108987.1 CDS Afer_0346 NC_013124.1 355580 356317 R KEGG: saq:Sare_3145 transcriptional regulator, TrmB; transcriptional regulator complement(355580..356317) Acidimicrobium ferrooxidans DSM 10331 8322401 YP_003108988.1 CDS Afer_0347 NC_013124.1 356412 357521 D PFAM: protein of unknown function DUF59; KEGG: sgr:SGR_2373 ATP-binding protein; hypothetical protein 356412..357521 Acidimicrobium ferrooxidans DSM 10331 8322402 YP_003108989.1 CDS Afer_0348 NC_013124.1 357560 357793 D KEGG: lxx:Lxx09210 hypothetical protein; hypothetical protein 357560..357793 Acidimicrobium ferrooxidans DSM 10331 8322403 YP_003108990.1 CDS Afer_0349 NC_013124.1 357806 358726 D KEGG: ade:Adeh_0929 chromosome partitioning-like ATPase; chromosome partitioning-like ATPase 357806..358726 Acidimicrobium ferrooxidans DSM 10331 8322404 YP_003108991.1 CDS Afer_0350 NC_013124.1 358723 359850 D KEGG: fre:Franean1_0335 anion-transporting ATPase; chromosome partitioning ATPase 358723..359850 Acidimicrobium ferrooxidans DSM 10331 8322405 YP_003108992.1 CDS Afer_0351 NC_013124.1 359862 360728 D PFAM: PHP domain protein; KEGG: tpd:Teth39_0146 HisJ family histidinol phosphate phosphatase; PHP domain-containing protein 359862..360728 Acidimicrobium ferrooxidans DSM 10331 8322406 YP_003108993.1 CDS Afer_0352 NC_013124.1 360734 362161 D PFAM: histidine kinase dimerization/phosphoacceptor; PAS fold-4 domain protein; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: ace:Acel_0559 signal transduction histidine kinase; signal transduction histidine kinase 360734..362161 Acidimicrobium ferrooxidans DSM 10331 8322407 YP_003108994.1 CDS Afer_0353 NC_013124.1 362240 362995 D PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: sen:SACE_6197 electron transfer flavoprotein, beta subunit; Electron transfer flavoprotein alpha/beta- subunit 362240..362995 Acidimicrobium ferrooxidans DSM 10331 8322408 YP_003108995.1 CDS Afer_0354 NC_013124.1 363006 363974 D PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: ace:Acel_0685 electron transfer flavoprotein, alpha subunit; Electron transfer flavoprotein alpha subunit 363006..363974 Acidimicrobium ferrooxidans DSM 10331 8322409 YP_003108996.1 CDS Afer_0355 NC_013124.1 364102 364518 R KEGG: ace:Acel_0566 superoxide dismutase; TIGRFAM: superoxide dismutase, Ni; PFAM: Superoxide dismutase Ni-type; superoxide dismutase, Ni complement(364102..364518) Acidimicrobium ferrooxidans DSM 10331 8322410 YP_003108997.1 CDS Afer_0356 NC_013124.1 365098 365262 R hypothetical protein complement(365098..365262) Acidimicrobium ferrooxidans DSM 10331 8322411 YP_003108998.1 CDS Afer_0357 NC_013124.1 365286 366110 R KEGG: sfu:Sfum_0197 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent; pyrroline-5-carboxylate reductase complement(365286..366110) Acidimicrobium ferrooxidans DSM 10331 8322412 YP_003108999.1 CDS Afer_0358 NC_013124.1 366120 367337 R PFAM: glycosyl transferase group 1; KEGG: kra:Krad_0890 glycosyl transferase group 1; group 1 glycosyl transferase complement(366120..367337) Acidimicrobium ferrooxidans DSM 10331 8322413 YP_003109000.1 CDS Afer_0359 NC_013124.1 367392 367928 R KEGG: hypothetical protein; hypothetical protein complement(367392..367928) Acidimicrobium ferrooxidans DSM 10331 8322414 YP_003109001.1 CDS Afer_0360 NC_013124.1 367959 370163 R KEGG: npu:Npun_F1793 amylo-alpha-1,6-glucosidase; amylo-alpha-1,6-glucosidase complement(367959..370163) Acidimicrobium ferrooxidans DSM 10331 8322415 YP_003109002.1 CDS Afer_0361 NC_013124.1 370160 371320 R PFAM: glycosyl transferase group 1; KEGG: art:Arth_3461 glycosyl transferase, group 1; group 1 glycosyl transferase complement(370160..371320) Acidimicrobium ferrooxidans DSM 10331 8322416 YP_003109003.1 CDS Afer_0362 NC_013124.1 371416 372726 R TIGRFAM: geranylgeranyl reductase; PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: mkm:Mkms_0784 geranylgeranyl reductase; geranylgeranyl reductase complement(371416..372726) Acidimicrobium ferrooxidans DSM 10331 8322417 YP_003109004.1 CDS Afer_0363 NC_013124.1 372882 373340 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 3; KEGG: gbm:Gbem_3926 NADH-ubiquinone/plastoquinone oxidoreductase chain 3; NADH-ubiquinone/plastoquinone oxidoreductase chain 3 372882..373340 Acidimicrobium ferrooxidans DSM 10331 8322418 YP_003109005.1 CDS Afer_0364 NC_013124.1 373342 373884 D KEGG: ace:Acel_0268 NADH dehydrogenase subunit B; TIGRFAM: NADH-quinone oxidoreductase, B subunit; PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit; NADH-quinone oxidoreductase subunit B 373342..373884 Acidimicrobium ferrooxidans DSM 10331 8322419 YP_003109006.1 CDS Afer_0365 NC_013124.1 373881 374321 D PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit; KEGG: aba:Acid345_1314 NADH (or F420H2) dehydrogenase, subunit C; NADH dehydrogenase (ubiquinone) 30 kDa subunit 373881..374321 Acidimicrobium ferrooxidans DSM 10331 8322420 YP_003109007.1 CDS Afer_0366 NC_013124.1 374421 375674 D KEGG: fra:Francci3_0541 NADH dehydrogenase subunit D; TIGRFAM: NADH dehydrogenase I, D subunit; PFAM: NADH-ubiquinone oxidoreductase chain 49kDa; NADH dehydrogenase I, D subunit 374421..375674 Acidimicrobium ferrooxidans DSM 10331 8322421 YP_003109008.1 CDS Afer_0367 NC_013124.1 375675 376301 D TIGRFAM: NADH-quinone oxidoreductase, E subunit; PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit; KEGG: msm:MSMEG_2059 NADH-quinone oxidoreductase chain E; NADH-quinone oxidoreductase, E subunit 375675..376301 Acidimicrobium ferrooxidans DSM 10331 8322422 YP_003109009.1 CDS Afer_0368 NC_013124.1 376298 377596 D PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: mxa:MXAN_1085 NADH dehydrogenase I, F subunit; NADH dehydrogenase (quinone) 376298..377596 Acidimicrobium ferrooxidans DSM 10331 8322423 YP_003109010.1 CDS Afer_0369 NC_013124.1 377589 380090 D TIGRFAM: NADH-quinone oxidoreductase, chain G; PFAM: molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; ferredoxin; KEGG: tfu:Tfu_2689 NADH dehydrogenase subunit G; NADH-quinone oxidoreductase subunit G 377589..380090 Acidimicrobium ferrooxidans DSM 10331 8322424 YP_003109011.1 CDS Afer_0370 NC_013124.1 380080 381342 D PFAM: respiratory-chain NADH dehydrogenase subunit 1; KEGG: ace:Acel_0274 NADH dehydrogenase subunit H; NADH dehydrogenase (quinone) 380080..381342 Acidimicrobium ferrooxidans DSM 10331 8322425 YP_003109012.1 CDS Afer_0371 NC_013124.1 381323 382012 D TIGRFAM: NADH-quinone oxidoreductase, chain I; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: fre:Franean1_6086 NADH dehydrogenase subunit I; NADH-quinone oxidoreductase subunit I 381323..382012 Acidimicrobium ferrooxidans DSM 10331 8322426 YP_003109013.1 CDS Afer_0372 NC_013124.1 382009 382587 D PFAM: NADH-ubiquinone/plastoquinone oxidoreductase chain 6; KEGG: sen:SACE_6893 NADH dehydrogenase subunit J; NADH-ubiquinone/plastoquinone oxidoreductase chain 6 382009..382587 Acidimicrobium ferrooxidans DSM 10331 8322427 YP_003109014.1 CDS Afer_0373 NC_013124.1 382584 382886 D PFAM: NADH-ubiquinone oxidoreductase chain 4L; KEGG: rrs:RoseRS_2233 NADH-ubiquinone oxidoreductase, chain 4L; NADH-ubiquinone oxidoreductase chain 4L 382584..382886 Acidimicrobium ferrooxidans DSM 10331 8322428 YP_003109015.1 CDS Afer_0374 NC_013124.1 382893 384770 D KEGG: glo:Glov_3127 proton-translocating NADH- quinone oxidoreductase, chain L; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain L; PFAM: NADH/Ubiquinone/plastoquinone (complex I); NADH-Ubiquinone oxidoreductase (complex I) chain 5/L domain protein; proton-translocating NADH-quinone oxidoreductase subunit L 382893..384770 Acidimicrobium ferrooxidans DSM 10331 8322429 YP_003109016.1 CDS Afer_0375 NC_013124.1 384786 386324 D KEGG: fre:Franean1_6082 proton-translocating NADH- quinone oxidoreductase, chain M; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain M; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit M 384786..386324 Acidimicrobium ferrooxidans DSM 10331 8322430 YP_003109017.1 CDS Afer_0376 NC_013124.1 386321 387892 D KEGG: rrs:RoseRS_2230 proton-translocating NADH- quinone oxidoreductase, chain N; TIGRFAM: proton-translocating NADH-quinone oxidoreductase, chain N; PFAM: NADH/Ubiquinone/plastoquinone (complex I); proton-translocating NADH-quinone oxidoreductase subunit N 386321..387892 Acidimicrobium ferrooxidans DSM 10331 8322431 YP_003109018.1 CDS Afer_0377 NC_013124.1 387910 388701 R PFAM: short-chain dehydrogenase/reductase SDR; KEGG: stp:Strop_0725 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR complement(387910..388701) Acidimicrobium ferrooxidans DSM 10331 8322432 YP_003109019.1 CDS Afer_0378 NC_013124.1 388694 391510 R PFAM: protein of unknown function DUF470; protein of unknown function DUF472; protein of unknown function DUF471; KEGG: sma:SAV_4673 hypothetical protein; hypothetical protein complement(388694..391510) Acidimicrobium ferrooxidans DSM 10331 8322433 YP_003109020.1 CDS Afer_0379 NC_013124.1 391512 392006 R PFAM: protein of unknown function DUF520; KEGG: saq:Sare_0477 nucleotide-binding protein; hypothetical protein complement(391512..392006) Acidimicrobium ferrooxidans DSM 10331 8322434 YP_003109021.1 CDS Afer_0380 NC_013124.1 392231 393799 D KEGG: sen:SACE_2172 hypothetical protein; hypothetical protein 392231..393799 Acidimicrobium ferrooxidans DSM 10331 8322436 YP_003109022.1 CDS Afer_0381 NC_013124.1 393790 394542 D PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: met:M446_4878 HhH-GPD family protein; HhH-GPD family protein 393790..394542 Acidimicrobium ferrooxidans DSM 10331 8322437 YP_003109023.1 CDS Afer_0382 NC_013124.1 394432 394932 R PFAM: GCN5-related N-acetyltransferase; KEGG: pzu:PHZ_c2723 phosphinothricin N- acetyltransferase; GCN5-like N-acetyltransferase complement(394432..394932) Acidimicrobium ferrooxidans DSM 10331 8322438 YP_003109024.1 CDS Afer_0383 NC_013124.1 395174 395338 D TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: dau:Daud_0208 ribosomal protein L33; 50S ribosomal protein L33 395174..395338 Acidimicrobium ferrooxidans DSM 10331 8322441 YP_003109025.1 CDS Afer_0384 NC_013124.1 395455 395994 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: scl:sce8793 ECF family RNA polymerase sigma factor; ECF subfamily RNA polymerase sigma-24 subunit 395455..395994 Acidimicrobium ferrooxidans DSM 10331 8322442 YP_003109026.1 CDS Afer_0385 NC_013124.1 396162 396422 D TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: nfa:nfa51170 preprotein translocase subunit SecE; preprotein translocase subunit SecE 396162..396422 Acidimicrobium ferrooxidans DSM 10331 8322444 YP_003109027.1 CDS Afer_0386 NC_013124.1 396466 397197 D KEGG: fre:Franean1_6062 NusG antitermination factor; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; SMART: NGN domain protein; KOW domain protein; NusG antitermination factor 396466..397197 Acidimicrobium ferrooxidans DSM 10331 8322445 YP_003109028.1 CDS Afer_0387 NC_013124.1 397324 397755 D KEGG: nca:Noca_0696 50S ribosomal protein L11P; TIGRFAM: ribosomal protein L11; PFAM: ribosomal protein L11; SMART: ribosomal protein L11; 50S ribosomal protein L11 397324..397755 Acidimicrobium ferrooxidans DSM 10331 8322446 YP_003109029.1 CDS Afer_0388 NC_013124.1 397781 398506 D TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: tfu:Tfu_2657 50S ribosomal protein L1P; 50S ribosomal protein L1 397781..398506 Acidimicrobium ferrooxidans DSM 10331 8322447 YP_003109030.1 CDS Afer_0389 NC_013124.1 398655 399179 D PFAM: ribosomal protein L10; KEGG: pac:PPA1887 50S ribosomal protein L10; 50S ribosomal protein L10 398655..399179 Acidimicrobium ferrooxidans DSM 10331 8322448 YP_003109031.1 CDS Afer_0390 NC_013124.1 399213 399599 D TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: fra:Francci3_0572 50S ribosomal protein L7/L12; 50S ribosomal protein L7/L12 399213..399599 Acidimicrobium ferrooxidans DSM 10331 8322449 YP_003109032.1 CDS Afer_0391 NC_013124.1 399848 403393 D TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase Rpb2 domain 7; RNA polymerase Rpb2 domain 3; RNA polymerase beta subunit; KEGG: fal:FRAAL1072 DNA-directed RNA polymerase subunit beta; DNA-directed RNA polymerase subunit beta 399848..403393 Acidimicrobium ferrooxidans DSM 10331 8322450 YP_003109033.1 CDS Afer_0392 NC_013124.1 403393 407256 D KEGG: ace:Acel_0300 DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 5; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; SMART: RNA polymerase I subunit A domain protein; DNA-directed RNA polymerase subunit beta' 403393..407256 Acidimicrobium ferrooxidans DSM 10331 8322451 YP_003109034.1 CDS Afer_0393 NC_013124.1 407427 407798 D TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: ace:Acel_0301 30S ribosomal protein S12; 30S ribosomal protein S12 407427..407798 Acidimicrobium ferrooxidans DSM 10331 8322452 YP_003109035.1 CDS Afer_0394 NC_013124.1 407802 408272 D TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: msm:MSMEG_1399 ribosomal protein S7; 30S ribosomal protein S7 407802..408272 Acidimicrobium ferrooxidans DSM 10331 8322453 YP_003109036.1 CDS Afer_0395 NC_013124.1 408289 410376 D TIGRFAM: translation elongation factor G; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; elongation factor G domain IV; KEGG: mta:Moth_2463 elongation factor G; translation elongation factor G 408289..410376 Acidimicrobium ferrooxidans DSM 10331 8322454 YP_003109037.1 CDS Afer_0396 NC_013124.1 410452 411639 D KEGG: ace:Acel_0304 elongation factor Tu; TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain protein; elongation factor Tu domain 2 protein; translation elongation factor Tu 410452..411639 Acidimicrobium ferrooxidans DSM 10331 8322455 YP_003109038.1 CDS Afer_0397 NC_013124.1 411720 412046 D TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; KEGG: saq:Sare_4316 30S ribosomal protein S10; 30S ribosomal protein S10 411720..412046 Acidimicrobium ferrooxidans DSM 10331 8322456 YP_003109039.1 CDS Afer_0398 NC_013124.1 412223 412864 D PFAM: ribosomal protein L3; KEGG: ace:Acel_0306 50S ribosomal protein L3P; 50S ribosomal protein L3 412223..412864 Acidimicrobium ferrooxidans DSM 10331 8322457 YP_003109040.1 CDS Afer_0399 NC_013124.1 412865 413509 D PFAM: ribosomal protein L4/L1e; KEGG: saq:Sare_4314 ribosomal protein L4/L1e; 50S ribosomal protein L4/L1e 412865..413509 Acidimicrobium ferrooxidans DSM 10331 8322458 YP_003109041.1 CDS Afer_0400 NC_013124.1 413506 413802 D PFAM: Ribosomal protein L25/L23; KEGG: pac:PPA1861 50S ribosomal protein L23; 50S ribosomal protein L25/L23 413506..413802 Acidimicrobium ferrooxidans DSM 10331 8322459 YP_003109042.1 CDS Afer_0401 NC_013124.1 413806 414642 D TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; KEGG: nfa:nfa7360 50S ribosomal protein L2; 50S ribosomal protein L2 413806..414642 Acidimicrobium ferrooxidans DSM 10331 8322460 YP_003109043.1 CDS Afer_0402 NC_013124.1 414646 414927 D TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: sen:SACE_6832 30S ribosomal protein S19; 30S ribosomal protein S19 414646..414927 Acidimicrobium ferrooxidans DSM 10331 8322461 YP_003109044.1 CDS Afer_0403 NC_013124.1 414927 415583 D TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: mkm:Mkms_1035 50S ribosomal protein L22; 50S ribosomal protein L22 414927..415583 Acidimicrobium ferrooxidans DSM 10331 8322462 YP_003109045.1 CDS Afer_0404 NC_013124.1 415587 416453 D KEGG: tfu:Tfu_2640 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; KH type 2 domain protein; Ribosomal protein S3 domain; SMART: KH domain protein; 30S ribosomal protein S3 415587..416453 Acidimicrobium ferrooxidans DSM 10331 8322463 YP_003109046.1 CDS Afer_0405 NC_013124.1 416456 416893 D TIGRFAM: ribosomal protein L16; PFAM: ribosomal protein L16; KEGG: rxy:Rxyl_2148 50S ribosomal protein L16; 50S ribosomal protein L16 416456..416893 Acidimicrobium ferrooxidans DSM 10331 8322464 YP_003109047.1 CDS Afer_0406 NC_013124.1 416890 417126 D TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: cak:Caul_1622 ribosomal protein L29; 50S ribosomal protein L29 416890..417126 Acidimicrobium ferrooxidans DSM 10331 8322465 YP_003109048.1 CDS Afer_0407 NC_013124.1 417123 417395 D PFAM: ribosomal protein S17; KEGG: ace:Acel_0315 SSU ribosomal protein S17P; 30S ribosomal protein S17 417123..417395 Acidimicrobium ferrooxidans DSM 10331 8322466 YP_003109049.1 CDS Afer_0408 NC_013124.1 417392 417760 D TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: saq:Sare_4305 50S ribosomal protein L14; 50S ribosomal protein L14 417392..417760 Acidimicrobium ferrooxidans DSM 10331 8322467 YP_003109050.1 CDS Afer_0409 NC_013124.1 417761 418066 D KEGG: chy:CHY_2298 50S ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW domain protein; 50S ribosomal protein L24 417761..418066 Acidimicrobium ferrooxidans DSM 10331 8322468 YP_003109051.1 CDS Afer_0410 NC_013124.1 418066 418635 D PFAM: ribosomal protein L5; KEGG: fra:Francci3_0594 50S ribosomal protein L5; 50S ribosomal protein L5 418066..418635 Acidimicrobium ferrooxidans DSM 10331 8322469 YP_003109052.1 CDS Afer_0411 NC_013124.1 418635 418820 D PFAM: ribosomal protein S14; KEGG: tfu:Tfu_2633 SSU ribosomal protein S14P; 30S ribosomal protein S14 418635..418820 Acidimicrobium ferrooxidans DSM 10331 8322470 YP_003109053.1 CDS Afer_0412 NC_013124.1 418833 419243 D PFAM: ribosomal protein S8; KEGG: cjk:jk1797 30S ribosomal protein S8; 30S ribosomal protein S8 418833..419243 Acidimicrobium ferrooxidans DSM 10331 8322471 YP_003109054.1 CDS Afer_0413 NC_013124.1 419252 419791 D PFAM: ribosomal protein L6; KEGG: ace:Acel_0321 50S ribosomal protein L6P; 50S ribosomal protein L6 419252..419791 Acidimicrobium ferrooxidans DSM 10331 8322472 YP_003109055.1 CDS Afer_0414 NC_013124.1 419802 420161 D TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: rrs:RoseRS_1169 ribosomal protein L18; 50S ribosomal protein L18 419802..420161 Acidimicrobium ferrooxidans DSM 10331 8322473 YP_003109056.1 CDS Afer_0415 NC_013124.1 420162 420713 D TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5 ; ribosomal protein S5 domain protein; KEGG: cur:cur_0351 30S ribosomal protein S5; 30S ribosomal protein S5 420162..420713 Acidimicrobium ferrooxidans DSM 10331 8322474 YP_003109057.1 CDS Afer_0416 NC_013124.1 420706 420897 D TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: rxy:Rxyl_2137 LSU ribosomal protein L30P; 50S ribosomal protein L30 420706..420897 Acidimicrobium ferrooxidans DSM 10331 8322475 YP_003109058.1 CDS Afer_0417 NC_013124.1 420894 421394 D TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; KEGG: kra:Krad_0707 50S ribosomal protein L15; 50S ribosomal protein L15 420894..421394 Acidimicrobium ferrooxidans DSM 10331 8322476 YP_003109059.1 CDS Afer_0418 NC_013124.1 421417 422712 D TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: fre:Franean1_6029 preprotein translocase subunit SecY; preprotein translocase subunit SecY 421417..422712 Acidimicrobium ferrooxidans DSM 10331 8322477 YP_003109060.1 CDS Afer_0419 NC_013124.1 422713 423390 D TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: mta:Moth_2439 adenylate kinase; adenylate kinase 422713..423390 Acidimicrobium ferrooxidans DSM 10331 8322478 YP_003109061.1 CDS Afer_0420 NC_013124.1 423387 424142 D TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: sma:SAV_4948 methionine aminopeptidase; methionine aminopeptidase, type I 423387..424142 Acidimicrobium ferrooxidans DSM 10331 8322479 YP_003109062.1 CDS Afer_0421 NC_013124.1 424236 424460 D KEGG: bha:BH0158 translation initiation factor IF-1; TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; SMART: RNA binding S1 domain protein; translation initiation factor IF-1 424236..424460 Acidimicrobium ferrooxidans DSM 10331 8322480 YP_003109063.1 CDS Afer_0422 NC_013124.1 424535 424648 D TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: lwe:lwe2559 50S ribosomal protein L36; 50S ribosomal protein L36 424535..424648 Acidimicrobium ferrooxidans DSM 10331 8322481 YP_003109064.1 CDS Afer_0423 NC_013124.1 424652 425029 D PFAM: ribosomal protein S13; KEGG: ace:Acel_0331 30S ribosomal protein S13; 30S ribosomal protein S13 424652..425029 Acidimicrobium ferrooxidans DSM 10331 8322482 YP_003109065.1 CDS Afer_0424 NC_013124.1 425195 425593 D PFAM: ribosomal protein S11; ribosomal protein L18P/L5E; KEGG: tte:TTE2265 30S ribosomal protein S11; 30S ribosomal protein S11 425195..425593 Acidimicrobium ferrooxidans DSM 10331 8322483 YP_003109066.1 CDS Afer_0425 NC_013124.1 425594 426220 D KEGG: sth:STH3048 30S ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: ribosomal protein S4; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; 30S ribosomal protein S4 425594..426220 Acidimicrobium ferrooxidans DSM 10331 8322484 YP_003109067.1 CDS Afer_0426 NC_013124.1 426272 427210 D KEGG: mjl:Mjls_1142 DNA-directed RNA polymerase subunit alpha; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase alpha subunit domain protein; RNA polymerase dimerization; SMART: RNA polymerase RpoA/D/Rpb3-type; DNA-directed RNA polymerase subunit alpha 426272..427210 Acidimicrobium ferrooxidans DSM 10331 8322485 YP_003109068.1 CDS Afer_0427 NC_013124.1 427212 427568 D TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: sma:SAV_4954 50S ribosomal protein L17; 50S ribosomal protein L17 427212..427568 Acidimicrobium ferrooxidans DSM 10331 8322486 YP_003109069.1 CDS Afer_0428 NC_013124.1 427642 428526 D PFAM: tRNA pseudouridine synthase; KEGG: tfu:Tfu_2616 tRNA pseudouridine synthase A; tRNA pseudouridine synthase 427642..428526 Acidimicrobium ferrooxidans DSM 10331 8322487 YP_003109070.1 CDS Afer_0429 NC_013124.1 428721 429185 D TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; KEGG: sen:SACE_6781 50S ribosomal protein L13; 50S ribosomal protein L13 428721..429185 Acidimicrobium ferrooxidans DSM 10331 8322488 YP_003109071.1 CDS Afer_0430 NC_013124.1 429182 429574 D PFAM: ribosomal protein S9; KEGG: bsu:BSU01500 30S ribosomal protein S9; 30S ribosomal protein S9 429182..429574 Acidimicrobium ferrooxidans DSM 10331 8322489 YP_003109072.1 CDS Afer_0431 NC_013124.1 429574 430902 D PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: dau:Daud_0359 phosphoglucosamine mutase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I 429574..430902 Acidimicrobium ferrooxidans DSM 10331 8322490 YP_003109073.1 CDS Afer_0432 NC_013124.1 430963 432804 D TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; KEGG: tfu:Tfu_2611 D-fructose-6-phosphate amidotransferase; glucosamine/fructose-6-phosphate aminotransferase 430963..432804 Acidimicrobium ferrooxidans DSM 10331 8322491 YP_003109074.1 CDS Afer_0433 NC_013124.1 432964 434064 R PFAM: C4-dicarboxylate transporter/malic acid transport protein; KEGG: rce:RC1_0015 C4-dicarboxylate transporter; C4-dicarboxylate transporter/malic acid transport protein complement(432964..434064) Acidimicrobium ferrooxidans DSM 10331 8322492 YP_003109075.1 CDS Afer_0434 NC_013124.1 434176 435108 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dge:Dgeo_2840 LysR family transcriptional regulator; LysR family transcriptional regulator 434176..435108 Acidimicrobium ferrooxidans DSM 10331 8322493 YP_003109076.1 CDS Afer_0435 NC_013124.1 435109 435474 D TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: saq:Sare_4249 holo-acyl-carrier-protein synthase; holo-acyl-carrier-protein synthase 435109..435474 Acidimicrobium ferrooxidans DSM 10331 8322494 YP_003109077.1 CDS Afer_0436 NC_013124.1 435558 437000 D TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF- family domain protein; KEGG: ace:Acel_0345 carbohydrate kinase, YjeF related protein; carbohydrate kinase, YjeF-like protein 435558..437000 Acidimicrobium ferrooxidans DSM 10331 8322495 YP_003109078.1 CDS Afer_0437 NC_013124.1 436997 438088 D KEGG: ace:Acel_0355 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein; alanine racemase 436997..438088 Acidimicrobium ferrooxidans DSM 10331 8322496 YP_003109079.1 CDS Afer_0438 NC_013124.1 438075 438644 D TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: eba:ebA6487 DNA polymerase-related protein,bacteriophage-type; phage SPO1 DNA polymerase-like protein 438075..438644 Acidimicrobium ferrooxidans DSM 10331 8322497 YP_003109080.1 CDS Afer_0439 NC_013124.1 438641 439102 D PFAM: protein of unknown function UPF0079; KEGG: xfn:XfasM23_2004 hypothetical protein; hypothetical protein 438641..439102 Acidimicrobium ferrooxidans DSM 10331 8322498 YP_003109081.1 CDS Afer_0440 NC_013124.1 439099 439746 D PFAM: peptidase M22 glycoprotease; KEGG: mag:amb4455 hypothetical protein; peptidase M22 glycoprotease 439099..439746 Acidimicrobium ferrooxidans DSM 10331 8322499 YP_003109082.1 CDS Afer_0441 NC_013124.1 439743 440246 D TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: tte:TTE0537 acetyltransferase; ribosomal-protein-alanine acetyltransferase 439743..440246 Acidimicrobium ferrooxidans DSM 10331 8322500 YP_003109083.1 CDS Afer_0442 NC_013124.1 440243 441286 D KEGG: sma:SAV_4974 O-sialoglycoprotein endopeptidase; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease; metalloendopeptidase, glycoprotease family 440243..441286 Acidimicrobium ferrooxidans DSM 10331 8322501 YP_003109084.1 CDS Afer_0443 NC_013124.1 441360 441653 D PFAM: chaperonin Cpn10; KEGG: kra:Krad_0735 co-chaperonin GroES; chaperonin Cpn10 441360..441653 Acidimicrobium ferrooxidans DSM 10331 8322502 YP_003109085.1 CDS Afer_0444 NC_013124.1 441656 443290 D TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: sco:SCO4762 chaperonin GroEL; chaperonin GroEL 441656..443290 Acidimicrobium ferrooxidans DSM 10331 8322503 YP_003109086.1 CDS Afer_0445 NC_013124.1 443590 444081 R PFAM: membrane protein of uknown function UCP014873; KEGG: bcs:BCAN_B0338 hypothetical protein; hypothetical protein complement(443590..444081) Acidimicrobium ferrooxidans DSM 10331 8322504 YP_003109087.1 CDS Afer_0446 NC_013124.1 444888 445208 D PFAM: transposase IS3/IS911 family protein; KEGG: mva:Mvan_5059 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 444888..445208 Acidimicrobium ferrooxidans DSM 10331 8322505 YP_003109088.1 CDS Afer_0447 NC_013124.1 445208 446077 D PFAM: Integrase catalytic region; KEGG: mva:Mvan_5060 integrase catalytic subunit; integrase catalytic subunit 445208..446077 Acidimicrobium ferrooxidans DSM 10331 8322506 YP_003109089.1 CDS Afer_0448 NC_013124.1 446155 446712 D KEGG: hypothetical protein; hypothetical protein 446155..446712 Acidimicrobium ferrooxidans DSM 10331 8322507 YP_003109090.1 CDS Afer_0449 NC_013124.1 446709 447626 D KEGG: bca:BCE_2353 triple helix repeat-containing collagen; hypothetical protein 446709..447626 Acidimicrobium ferrooxidans DSM 10331 8322508 YP_003109091.1 CDS Afer_0450 NC_013124.1 447623 449665 D KEGG: sma:SAV_2331 hypothetical protein; integral membrane protein 447623..449665 Acidimicrobium ferrooxidans DSM 10331 8322509 YP_003109092.1 CDS Afer_0451 NC_013124.1 449667 451736 D KEGG: stp:Strop_0191 hypothetical protein; hypothetical protein 449667..451736 Acidimicrobium ferrooxidans DSM 10331 8322510 YP_003109093.1 CDS Afer_0452 NC_013124.1 451746 452804 D TIGRFAM: sortase family protein; PFAM: peptidase C60 sortase A and B; KEGG: bha:BH4010 hypothetical protein; sortase family protein 451746..452804 Acidimicrobium ferrooxidans DSM 10331 8322511 YP_003109094.1 CDS Afer_0453 NC_013124.1 453006 453779 D PFAM: NUDIX hydrolase; KEGG: afw:Anae109_0164 NUDIX hydrolase; NUDIX hydrolase 453006..453779 Acidimicrobium ferrooxidans DSM 10331 8322512 YP_003109095.1 CDS Afer_0454 NC_013124.1 453758 454534 R KEGG: tfu:Tfu_2983 hypothetical protein; hypothetical protein complement(453758..454534) Acidimicrobium ferrooxidans DSM 10331 8322513 YP_003109096.1 CDS Afer_0455 NC_013124.1 454578 454955 R PFAM: Camphor resistance CrcB protein; KEGG: msm:MSMEG_2134 CrcB protein; Camphor resistance CrcB protein complement(454578..454955) Acidimicrobium ferrooxidans DSM 10331 8322514 YP_003109097.1 CDS Afer_0456 NC_013124.1 454952 455290 R PFAM: protein of unknown function DUF190; KEGG: nca:Noca_2956 hypothetical protein; hypothetical protein complement(454952..455290) Acidimicrobium ferrooxidans DSM 10331 8322515 YP_003109098.1 CDS Afer_0457 NC_013124.1 455287 455736 R PFAM: Camphor resistance CrcB protein; KEGG: cms:CMS_0830 integral membrane protein; Camphor resistance CrcB protein complement(455287..455736) Acidimicrobium ferrooxidans DSM 10331 8322516 YP_003109099.1 CDS Afer_0458 NC_013124.1 455733 456641 R KEGG: cyt:cce_0886 phosphate ABC transporter, periplasmic phosphate-binding protein; hypothetical protein complement(455733..456641) Acidimicrobium ferrooxidans DSM 10331 8322517 YP_003109100.1 CDS Afer_0459 NC_013124.1 456752 457915 D catalyzes the synthesis of xanthosine monophosphate by the NAD+ dependent oxidation of inosine monophosphate; inosine 5-monophosphate dehydrogenase 456752..457915 Acidimicrobium ferrooxidans DSM 10331 8322518 YP_003109101.1 CDS Afer_0460 NC_013124.1 457915 459468 D KEGG: fre:Franean1_5989 bifunctional GMP synthase/glutamine amidotransferase protein; TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; ExsB family protein; glutamine amidotransferase class-I; GMP synthase, large subunit 457915..459468 Acidimicrobium ferrooxidans DSM 10331 8322519 YP_003109102.1 CDS Afer_0461 NC_013124.1 459473 461620 D PFAM: UvrD/REP helicase; KEGG: tfu:Tfu_2580 ATP-dependent DNA helicase PcrA; UvrD/REP helicase 459473..461620 Acidimicrobium ferrooxidans DSM 10331 8322520 YP_003109103.1 CDS Afer_0462 NC_013124.1 462017 463270 D PFAM: NAD-dependent epimerase/dehydratase; KEGG: rrs:RoseRS_0861 NAD-dependent epimerase/dehydratase; UDP-sulfoquinovose synthase 462017..463270 Acidimicrobium ferrooxidans DSM 10331 8322521 YP_003109104.1 CDS Afer_0463 NC_013124.1 463307 464821 D KEGG: ace:Acel_1450 RND family efflux transporter MFP subunit; hypothetical protein 463307..464821 Acidimicrobium ferrooxidans DSM 10331 8322522 YP_003109105.1 CDS Afer_0464 NC_013124.1 464818 466713 D PFAM: glycosyl transferase family 2; KEGG: mkm:Mkms_4650 glycosyl transferase, family 2; family 2 glycosyl transferase 464818..466713 Acidimicrobium ferrooxidans DSM 10331 8322523 YP_003109106.1 CDS Afer_0465 NC_013124.1 466697 467563 D hypothetical protein 466697..467563 Acidimicrobium ferrooxidans DSM 10331 8322524 YP_003109107.1 CDS Afer_0466 NC_013124.1 467599 468441 D hypothetical protein 467599..468441 Acidimicrobium ferrooxidans DSM 10331 8322525 YP_003109108.1 CDS Afer_0467 NC_013124.1 468506 468910 D hypothetical protein 468506..468910 Acidimicrobium ferrooxidans DSM 10331 8322526 YP_003109109.1 CDS Afer_0469 NC_013124.1 470047 470931 R PFAM: Squalene/phytoene synthase; KEGG: saq:Sare_4931 squalene/phytoene synthase; Squalene/phytoene synthase complement(470047..470931) Acidimicrobium ferrooxidans DSM 10331 8322528 YP_003109110.1 CDS Afer_0470 NC_013124.1 470928 472418 R TIGRFAM: phytoene desaturase; PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: nfa:nfa43990 phytoene desaturase; phytoene desaturase complement(470928..472418) Acidimicrobium ferrooxidans DSM 10331 8322529 YP_003109111.1 CDS Afer_0471 NC_013124.1 472422 473510 R PFAM: Polyprenyl synthetase; KEGG: saq:Sare_3478 polyprenyl synthetase; polyprenyl synthetase complement(472422..473510) Acidimicrobium ferrooxidans DSM 10331 8322530 YP_003109112.1 CDS Afer_0472 NC_013124.1 473643 475022 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: hmo:HM1_0268 modulator of DNA gyrase; peptidase U62 modulator of DNA gyrase 473643..475022 Acidimicrobium ferrooxidans DSM 10331 8322531 YP_003109113.1 CDS Afer_0473 NC_013124.1 475015 476352 D PFAM: peptidase U62 modulator of DNA gyrase; KEGG: pth:PTH_1159 Zn-dependent protease; peptidase U62 modulator of DNA gyrase 475015..476352 Acidimicrobium ferrooxidans DSM 10331 8322532 YP_003109114.1 CDS Afer_0474 NC_013124.1 476353 476988 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dge:Dgeo_2010 PHP-like protein; PHP domain-containing protein 476353..476988 Acidimicrobium ferrooxidans DSM 10331 8322533 YP_003109115.1 CDS Afer_0475 NC_013124.1 477021 478262 D PFAM: MgtE intracellular region; CBS domain containing protein; SMART: CBS domain containing protein; KEGG: mav:MAV_2122 MgtE intracellular domain family protein; MgtE intracellular region 477021..478262 Acidimicrobium ferrooxidans DSM 10331 8322534 YP_003109116.1 CDS Afer_0476 NC_013124.1 478345 479928 R KEGG: ace:Acel_0596 natural resistance-associated macrophage protein; natural resistance-associated macrophage protein complement(478345..479928) Acidimicrobium ferrooxidans DSM 10331 8322535 YP_003109117.1 CDS Afer_0477 NC_013124.1 480108 480815 R PFAM: Methyltransferase type 11; methyltransferase small; Methyltransferase type 12; KEGG: hsl:OE2833R hypothetical protein; type 11 methyltransferase complement(480108..480815) Acidimicrobium ferrooxidans DSM 10331 8322536 YP_003109118.1 CDS Afer_0478 NC_013124.1 480859 481488 D PFAM: protein of unknown function DUF159; KEGG: scl:sce8138 hypothetical protein; hypothetical protein 480859..481488 Acidimicrobium ferrooxidans DSM 10331 8322537 YP_003109119.1 CDS Afer_0479 NC_013124.1 481469 483376 R TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: mab:MAB_2990c 1-deoxy-D-xylulose-5-phosphate synthase; deoxyxylulose-5-phosphate synthase complement(481469..483376) Acidimicrobium ferrooxidans DSM 10331 8322538 YP_003109120.1 CDS Afer_0480 NC_013124.1 483457 483783 D TIGRFAM: lycopene cyclase domain protein; KEGG: mjl:Mjls_5456 hypothetical protein; lycopene cyclase domain-containing protein 483457..483783 Acidimicrobium ferrooxidans DSM 10331 8322539 YP_003109121.1 CDS Afer_0481 NC_013124.1 483780 484088 D TIGRFAM: lycopene cyclase domain protein; KEGG: mmi:MMAR_4809 lycopene cyclase, CrtYd; lycopene cyclase domain-containing protein 483780..484088 Acidimicrobium ferrooxidans DSM 10331 8322540 YP_003109122.1 CDS Afer_0482 NC_013124.1 484153 484614 D PFAM: fatty acid hydroxylase; KEGG: xau:Xaut_4535 carotene hydroxylase; fatty acid hydroxylase 484153..484614 Acidimicrobium ferrooxidans DSM 10331 8322541 YP_003109123.1 CDS Afer_0483 NC_013124.1 484684 485247 D TIGRFAM: intracellular protease, PfpI family; PFAM: ThiJ/PfpI domain protein; KEGG: pto:PTO1077 protease I; intracellular protease, PfpI family 484684..485247 Acidimicrobium ferrooxidans DSM 10331 8322542 YP_003109124.1 CDS Afer_0484 NC_013124.1 485596 486060 R KEGG: fra:Francci3_2745 hypothetical protein; hypothetical protein complement(485596..486060) Acidimicrobium ferrooxidans DSM 10331 8322543 YP_003109125.1 CDS Afer_0485 NC_013124.1 486123 486617 R PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: acr:Acry_1918 YbaK/prolyl-tRNA synthetase associated region; YbaK/prolyl-tRNA synthetase associated region complement(486123..486617) Acidimicrobium ferrooxidans DSM 10331 8322544 YP_003109126.1 CDS Afer_0486 NC_013124.1 486614 487867 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: MoeA domain protein domain I and II; MoeA domain protein domain IV; molybdopterin binding domain; KEGG: ace:Acel_0167 molybdopterin molybdochelatase; molybdenum cofactor synthesis domain-containing protein complement(486614..487867) Acidimicrobium ferrooxidans DSM 10331 8322545 YP_003109127.1 CDS Afer_0487 NC_013124.1 487851 488741 R TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: sma:SAV_3673 UTP:glucose-1-phosphate uridylyltransferase; UTP-glucose-1-phosphate uridylyltransferase complement(487851..488741) Acidimicrobium ferrooxidans DSM 10331 8322546 YP_003109128.1 CDS Afer_0488 NC_013124.1 488906 489229 D TIGRFAM: regulatory protein, FmdB family; KEGG: kra:Krad_3694 FmdB family regulatory protein; FmdB family regulatory protein 488906..489229 Acidimicrobium ferrooxidans DSM 10331 8322547 YP_003109129.1 CDS Afer_0489 NC_013124.1 489340 490569 D PFAM: glycosyl transferase group 1; KEGG: sgr:SGR_5187 glycosyl transferase; group 1 glycosyl transferase 489340..490569 Acidimicrobium ferrooxidans DSM 10331 8322548 YP_003109130.1 CDS Afer_0490 NC_013124.1 490566 491234 D PFAM: Methyltransferase type 11; Methionine biosynthesis MetW protein; Methyltransferase type 12; KEGG: tfu:Tfu_0572 hypothetical protein; type 11 methyltransferase 490566..491234 Acidimicrobium ferrooxidans DSM 10331 8322549 YP_003109131.1 CDS Afer_0491 NC_013124.1 491228 492223 D KEGG: nfa:nfa25760 hypothetical protein; hypothetical protein 491228..492223 Acidimicrobium ferrooxidans DSM 10331 8322550 YP_003109132.1 CDS Afer_0492 NC_013124.1 492195 492998 R KEGG: sgr:SGR_5196 hypothetical protein; hypothetical protein complement(492195..492998) Acidimicrobium ferrooxidans DSM 10331 8322551 YP_003109133.1 CDS Afer_0493 NC_013124.1 493006 495564 R PFAM: Peptidase M1 membrane alanine aminopeptidase; KEGG: ank:AnaeK_2441 peptidase M1 membrane alanine aminopeptidase; peptidase M1 membrane alanine aminopeptidase complement(493006..495564) Acidimicrobium ferrooxidans DSM 10331 8322552 YP_003109134.1 CDS Afer_0494 NC_013124.1 495618 496700 D PFAM: PfkB domain protein; KEGG: rru:Rru_A0149 PfkB; PfkB domain-containing protein 495618..496700 Acidimicrobium ferrooxidans DSM 10331 8322553 YP_003109135.1 CDS Afer_0495 NC_013124.1 497334 499886 D PFAM: glycoside hydrolase 15-related; KEGG: ote:Oter_3331 glycoside hydrolase 15-related; glycoside hydrolase 15-like protein 497334..499886 Acidimicrobium ferrooxidans DSM 10331 8322554 YP_003109136.1 CDS Afer_0496 NC_013124.1 499929 501305 D KEGG: afw:Anae109_0597 glucose-6-phosphate 1- dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase 499929..501305 Acidimicrobium ferrooxidans DSM 10331 8322555 YP_003109137.1 CDS Afer_0497 NC_013124.1 501336 502205 D PFAM: ROK family protein; KEGG: gka:GK2442 glucokinase; ROK family protein 501336..502205 Acidimicrobium ferrooxidans DSM 10331 8322556 YP_003109138.1 CDS Afer_0498 NC_013124.1 502202 503371 D PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: pto:PTO1267 transporter; major facilitator superfamily protein 502202..503371 Acidimicrobium ferrooxidans DSM 10331 8322557 YP_003109139.1 CDS Afer_0499 NC_013124.1 503385 504383 R KEGG: trq:TRQ2_0031 galactose-1-phosphate uridylyltransferase; TIGRFAM: galactose-1-phosphate uridylyltransferase; PFAM: galactose-1-phosphate uridyl transferase domain protein; galactose-1-phosphate uridylyltransferase complement(503385..504383) Acidimicrobium ferrooxidans DSM 10331 8322558 YP_003109140.1 CDS Afer_0500 NC_013124.1 504505 505647 D PFAM: aminotransferase class V; KEGG: ank:AnaeK_1104 aminotransferase class V; Cysteine desulfurase 504505..505647 Acidimicrobium ferrooxidans DSM 10331 8322559 YP_003109141.1 CDS Afer_0501 NC_013124.1 505644 506117 D hypothetical protein 505644..506117 Acidimicrobium ferrooxidans DSM 10331 8322560 YP_003109142.1 CDS Afer_0502 NC_013124.1 506074 506796 R hypothetical protein complement(506074..506796) Acidimicrobium ferrooxidans DSM 10331 8322561 YP_003109143.1 CDS Afer_0503 NC_013124.1 507051 508340 R PFAM: Extracellular ligand-binding receptor; KEGG: hwa:HQ3303A ABC-type branched-chain amino acid transport systems, substrate-binding protein; Extracellular ligand-binding receptor complement(507051..508340) Acidimicrobium ferrooxidans DSM 10331 8322562 YP_003109144.1 CDS Afer_0504 NC_013124.1 508361 509125 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cya:CYA_2623 hydrophobic amino acid ABC transporter ATP-binding protein; ABC transporter-like protein complement(508361..509125) Acidimicrobium ferrooxidans DSM 10331 8322563 YP_003109145.1 CDS Afer_0505 NC_013124.1 509106 509903 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hwa:HQ2964A ABC-type branched-chain amino acid transport systems, ATP-binding protein I; ABC transporter-like protein complement(509106..509903) Acidimicrobium ferrooxidans DSM 10331 8322564 YP_003109146.1 CDS Afer_0506 NC_013124.1 509890 510909 R PFAM: inner-membrane translocator; KEGG: cya:CYA_2478 hydrophobic amino acid ABC transporter permease; inner-membrane translocator complement(509890..510909) Acidimicrobium ferrooxidans DSM 10331 8322565 YP_003109147.1 CDS Afer_0507 NC_013124.1 510920 511795 R PFAM: inner-membrane translocator; KEGG: csa:Csal_1420 inner-membrane translocator; inner-membrane translocator complement(510920..511795) Acidimicrobium ferrooxidans DSM 10331 8322566 YP_003109148.1 CDS Afer_0508 NC_013124.1 513386 514060 R PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: sgr:SGR_1695 two-component system response regulator; response regulator receiver and unknown domain-containing protein complement(513386..514060) Acidimicrobium ferrooxidans DSM 10331 8322567 YP_003109149.1 CDS Afer_0509 NC_013124.1 514253 514573 D PFAM: transposase IS3/IS911 family protein; KEGG: mva:Mvan_5059 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 514253..514573 Acidimicrobium ferrooxidans DSM 10331 8322568 YP_003109150.1 CDS Afer_0510 NC_013124.1 514573 515442 D PFAM: Integrase catalytic region; KEGG: mva:Mvan_5060 integrase catalytic subunit; integrase catalytic subunit 514573..515442 Acidimicrobium ferrooxidans DSM 10331 8322569 YP_003109151.1 CDS Afer_0511 NC_013124.1 515385 516950 R PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: aau:AAur_0705 two component sensor histidine kinase; signal transduction histidine kinase regulating citrate/malate metabolism complement(515385..516950) Acidimicrobium ferrooxidans DSM 10331 8322570 YP_003109152.1 CDS Afer_0513 NC_013124.1 517643 518077 D hypothetical protein 517643..518077 Acidimicrobium ferrooxidans DSM 10331 8322572 YP_003109153.1 CDS Afer_0519 NC_013124.1 520658 521536 R PFAM: Integrase catalytic region; KEGG: amr:AM1_A0193 integrase, catalytic region; integrase catalytic subunit complement(520658..521536) Acidimicrobium ferrooxidans DSM 10331 8322578 YP_003109154.1 CDS Afer_0520 NC_013124.1 521533 521862 R PFAM: transposase IS3/IS911 family protein; KEGG: rxy:Rxyl_1861 transposase IS3/IS911; transposase IS3/IS911 family protein complement(521533..521862) Acidimicrobium ferrooxidans DSM 10331 8322579 YP_003109155.1 CDS Afer_0521 NC_013124.1 522269 523873 R PFAM: phosphoesterase; KEGG: sai:Saci_1769 membrane associated phosphoesterase; phosphoesterase complement(522269..523873) Acidimicrobium ferrooxidans DSM 10331 8322580 YP_003109156.1 CDS Afer_0522 NC_013124.1 524486 526147 R KEGG: sgr:SGR_3644 ABC transporter ATP- binding protein and permease component; TIGRFAM: ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; PFAM: ABC transporter related; SMART: AAA ATPase; Sigma 54 interacting domain-containing protein complement(524486..526147) Acidimicrobium ferrooxidans DSM 10331 8322581 YP_003109157.1 CDS Afer_0523 NC_013124.1 526144 527814 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_4258 ABC transporter ATP-binding protein; ABC transporter-like protein complement(526144..527814) Acidimicrobium ferrooxidans DSM 10331 8322582 YP_003109158.1 CDS Afer_0524 NC_013124.1 527811 528857 R KEGG: hau:Haur_3758 cytochrome d ubiquinol oxidase, subunit II; TIGRFAM: cytochrome d ubiquinol oxidase, subunit II; PFAM: cytochrome bd ubiquinol oxidase subunit II; cytochrome d ubiquinol oxidase subunit II complement(527811..528857) Acidimicrobium ferrooxidans DSM 10331 8322583 YP_003109159.1 CDS Afer_0525 NC_013124.1 528867 530258 R PFAM: cytochrome bd ubiquinol oxidase subunit I; KEGG: ace:Acel_0600 cytochrome bd ubiquinol oxidase, subunit I; cytochrome bd ubiquinol oxidase subunit I complement(528867..530258) Acidimicrobium ferrooxidans DSM 10331 8322584 YP_003109160.1 CDS Afer_0526 NC_013124.1 530644 531525 R PFAM: GHMP kinase; KEGG: pde:Pden_0423 4-diphosphocytidyl-2C-methyl-D- erythritol kinase; GHMP kinase complement(530644..531525) Acidimicrobium ferrooxidans DSM 10331 8322585 YP_003109161.1 CDS Afer_0527 NC_013124.1 531522 532361 R PFAM: ribosomal RNA adenine methylase transferase; SMART: ribosomal RNA adenine methylase transferase; KEGG: gtn:GTNG_0035 dimethyladenosine transferase; ribosomal RNA adenine methylase transferase complement(531522..532361) Acidimicrobium ferrooxidans DSM 10331 8322586 YP_003109162.1 CDS Afer_0528 NC_013124.1 532367 533167 R TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; amidohydrolase 2; KEGG: scl:sce3778 TatD family deoxyribonuclease; hydrolase, TatD family complement(532367..533167) Acidimicrobium ferrooxidans DSM 10331 8322587 YP_003109163.1 CDS Afer_0529 NC_013124.1 533164 534675 R TIGRFAM: methionyl-tRNA synthetase; PFAM: tRNA synthetase class I (M); KEGG: ace:Acel_0175 methionyl-tRNA synthetase; methionyl-tRNA synthetase complement(533164..534675) Acidimicrobium ferrooxidans DSM 10331 8322588 YP_003109164.1 CDS Afer_0530 NC_013124.1 534716 535576 R PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: aau:AAur_1330 tetrapyrrole methylase family protein; Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase complement(534716..535576) Acidimicrobium ferrooxidans DSM 10331 8322589 YP_003109165.1 CDS Afer_0531 NC_013124.1 535573 535893 R hypothetical protein complement(535573..535893) Acidimicrobium ferrooxidans DSM 10331 8322590 YP_003109166.1 CDS Afer_0532 NC_013124.1 535890 536963 R TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP- binding protein HSR1-related; KEGG: kra:Krad_1124 translation-associated GTPase; GTP-binding protein YchF complement(535890..536963) Acidimicrobium ferrooxidans DSM 10331 8322591 YP_003109167.1 CDS Afer_0533 NC_013124.1 537104 538216 R PFAM: AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; magnesium chelatase ChlI subunit; SMART: AAA ATPase; KEGG: rxy:Rxyl_1040 recombination factor protein RarA; AAA ATPase central domain-containing protein complement(537104..538216) Acidimicrobium ferrooxidans DSM 10331 8322592 YP_003109168.1 CDS Afer_0534 NC_013124.1 538213 539979 R TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); GAD domain protein; nucleic acid binding OB-fold tRNA/helicase- type; KEGG: fra:Francci3_0692 aspartyl-tRNA synthetase; aspartyl-tRNA synthetase complement(538213..539979) Acidimicrobium ferrooxidans DSM 10331 8322593 YP_003109169.1 CDS Afer_0535 NC_013124.1 540051 540773 D TIGRFAM: precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: sco:SCO1853 precorrin-2 C20-methyltransferase; precorrin-2 C20-methyltransferase 540051..540773 Acidimicrobium ferrooxidans DSM 10331 8322594 YP_003109170.1 CDS Afer_0536 NC_013124.1 540770 541267 D PFAM: cobalbumin biosynthesis protein; KEGG: nfa:nfa17010 cobinamide kinase/cobinamide phosphate guanylyltransferase; cobalbumin biosynthesis protein 540770..541267 Acidimicrobium ferrooxidans DSM 10331 8322595 YP_003109171.1 CDS Afer_0537 NC_013124.1 541268 541996 D PFAM: cobalamin-5-phosphate synthase CobS; KEGG: cak:Caul_2743 cobalamin 5'-phosphate synthase; cobalamin-5-phosphate synthase CobS 541268..541996 Acidimicrobium ferrooxidans DSM 10331 8322596 YP_003109172.1 CDS Afer_0538 NC_013124.1 541983 542882 D TIGRFAM: cobalamin biosynthesis protein CobD; PFAM: cobalamin biosynthesis protein CbiB; KEGG: tfu:Tfu_2224 cobalamin biosynthesis protein; cobalamin biosynthesis protein CobD 541983..542882 Acidimicrobium ferrooxidans DSM 10331 8322597 YP_003109173.1 CDS Afer_0539 NC_013124.1 542892 543365 D PFAM: protein of unknown function UPF0047; KEGG: ace:Acel_1034 hypothetical protein; hypothetical protein 542892..543365 Acidimicrobium ferrooxidans DSM 10331 8322598 YP_003109174.1 CDS Afer_0540 NC_013124.1 543362 543904 R PFAM: dTDP-4-dehydrorhamnose 35-epimerase related; KEGG: chu:CHU_3843 dTDP-4-dehydrorhamnose 3,5- epimerase; dTDP-4-dehydrorhamnose 35-epimerase-like protein complement(543362..543904) Acidimicrobium ferrooxidans DSM 10331 8322599 YP_003109175.1 CDS Afer_0541 NC_013124.1 544042 545217 D KEGG: acr:Acry_1011 hypothetical protein; hypothetical protein 544042..545217 Acidimicrobium ferrooxidans DSM 10331 8322600 YP_003109176.1 CDS Afer_0542 NC_013124.1 545214 547286 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9A prolyl oligopeptidase domain protein beta-propeller; KEGG: cmi:CMM_2114 protease II (oligopeptidase B); Oligopeptidase B complement(545214..547286) Acidimicrobium ferrooxidans DSM 10331 8322601 YP_003109177.1 CDS Afer_0543 NC_013124.1 547369 548769 D TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: rxy:Rxyl_0170 iron-regulated ABC transporter membrane component SufB; FeS assembly protein SufB 547369..548769 Acidimicrobium ferrooxidans DSM 10331 8322602 YP_003109178.1 CDS Afer_0544 NC_013124.1 549282 550685 D KEGG: GSVIVT00021647001; assembled CDS; hypothetical protein 549282..550685 Acidimicrobium ferrooxidans DSM 10331 8322603 YP_003109179.1 CDS Afer_0545 NC_013124.1 550718 551188 D KEGG: hau:Haur_1465 hypothetical protein; hypothetical protein 550718..551188 Acidimicrobium ferrooxidans DSM 10331 8322604 YP_003109180.1 CDS Afer_0549 NC_013124.1 552385 552618 D hypothetical protein 552385..552618 Acidimicrobium ferrooxidans DSM 10331 8322608 YP_003109181.1 CDS Afer_0550 NC_013124.1 552745 553074 D PFAM: transposase IS3/IS911 family protein; KEGG: rxy:Rxyl_1861 transposase IS3/IS911; transposase IS3/IS911 family protein 552745..553074 Acidimicrobium ferrooxidans DSM 10331 8322609 YP_003109182.1 CDS Afer_0554 NC_013124.1 556487 557377 D PFAM: restriction endonuclease; KEGG: ace:Acel_0036 restriction endonuclease; restriction endonuclease 556487..557377 Acidimicrobium ferrooxidans DSM 10331 8322613 YP_003109183.1 CDS Afer_0556 NC_013124.1 558732 559259 R PFAM: protein of unknown function DUF1707; KEGG: sco:SCO5045 hypothetical protein; hypothetical protein complement(558732..559259) Acidimicrobium ferrooxidans DSM 10331 8322615 YP_003109184.1 CDS Afer_0557 NC_013124.1 559344 561023 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: fra:Francci3_0309 periplasmic sensor signal transduction histidine kinase; histidine kinase complement(559344..561023) Acidimicrobium ferrooxidans DSM 10331 8322616 YP_003109185.1 CDS Afer_0558 NC_013124.1 561004 561717 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: kra:Krad_3036 two component transcriptional regulator; winged helix family two component transcriptional regulator complement(561004..561717) Acidimicrobium ferrooxidans DSM 10331 8322617 YP_003109186.1 CDS Afer_0559 NC_013124.1 561769 563232 R PFAM: PDZ/DHR/GLGF domain protein; peptidase S1 and S6 chymotrypsin/Hap; SMART: PDZ/DHR/GLGF domain protein; KEGG: ace:Acel_1716 peptidase S1 and S6, chymotrypsin/Hap; PDZ/DHR/GLGF domain-containing protein complement(561769..563232) Acidimicrobium ferrooxidans DSM 10331 8322618 YP_003109187.1 CDS Afer_0560 NC_013124.1 563311 564051 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: dge:Dgeo_0145 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(563311..564051) Acidimicrobium ferrooxidans DSM 10331 8322619 YP_003109188.1 CDS Afer_0561 NC_013124.1 564139 565320 D PFAM: SufBD protein; KEGG: rxy:Rxyl_0168 iron-regulated ABC transporter permease protein SufD; SufBD protein 564139..565320 Acidimicrobium ferrooxidans DSM 10331 8322620 YP_003109189.1 CDS Afer_0562 NC_013124.1 565308 565628 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: sgr:SGR_5597 ferredoxin subunit of phenylpropionate dioxygenase; Rieske (2Fe-2S) domain-containing protein 565308..565628 Acidimicrobium ferrooxidans DSM 10331 8322621 YP_003109190.1 CDS Afer_0563 NC_013124.1 565625 566374 D KEGG: rce:RC1_0492 FeS assembly ATPase SufC; TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; SMART: AAA ATPase; FeS assembly ATPase SufC 565625..566374 Acidimicrobium ferrooxidans DSM 10331 8322622 YP_003109191.1 CDS Afer_0564 NC_013124.1 566367 567485 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sma:SAV_1609 ferredoxin reductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(566367..567485) Acidimicrobium ferrooxidans DSM 10331 8322623 YP_003109192.1 CDS Afer_0565 NC_013124.1 567500 567691 R KEGG: mjl:Mjls_0441 ferredoxin (3Fe-4S); ferredoxin (3Fe-4S) complement(567500..567691) Acidimicrobium ferrooxidans DSM 10331 8322624 YP_003109193.1 CDS Afer_0566 NC_013124.1 567810 568571 D TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: rxy:Rxyl_0171 FeS assembly ATPase SufC; FeS assembly ATPase SufC 567810..568571 Acidimicrobium ferrooxidans DSM 10331 8322625 YP_003109194.1 CDS Afer_0567 NC_013124.1 568568 569818 D KEGG: ace:Acel_1138 SufS subfamily cysteine desulfurase; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; SufS subfamily cysteine desulfurase 568568..569818 Acidimicrobium ferrooxidans DSM 10331 8322626 YP_003109195.1 CDS Afer_0568 NC_013124.1 569827 570288 D TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: tth:TTC1374 IscU protein; SUF system FeS assembly protein, NifU family 569827..570288 Acidimicrobium ferrooxidans DSM 10331 8322627 YP_003109196.1 CDS Afer_0569 NC_013124.1 570742 571362 R hypothetical protein complement(570742..571362) Acidimicrobium ferrooxidans DSM 10331 8322628 YP_003109197.1 CDS Afer_0570 NC_013124.1 572014 573825 R KEGG: rrs:RoseRS_4277 Ig domain-containing protein; hypothetical protein complement(572014..573825) Acidimicrobium ferrooxidans DSM 10331 8322629 YP_003109198.1 CDS Afer_0571 NC_013124.1 574304 575689 D PFAM: ATPase; KEGG: sen:SACE_7308 hypothetical protein; ATPase 574304..575689 Acidimicrobium ferrooxidans DSM 10331 8322630 YP_003109199.1 CDS Afer_0572 NC_013124.1 575805 576959 D KEGG: rha:RHA1_ro03229 glycerate kinase; TIGRFAM: glycerate kinase; PFAM: glycerate kinase; glycerate kinase 575805..576959 Acidimicrobium ferrooxidans DSM 10331 8322631 YP_003109200.1 CDS Afer_0573 NC_013124.1 576984 578414 R PFAM: Aldehyde Dehydrogenase; KEGG: ace:Acel_1285 aldehyde dehydrogenase; aldehyde dehydrogenase complement(576984..578414) Acidimicrobium ferrooxidans DSM 10331 8322632 YP_003109201.1 CDS Afer_0574 NC_013124.1 578672 579226 D PFAM: regulatory protein AsnC/Lrp family; SMART: regulatory protein AsnC/Lrp family; KEGG: sgr:SGR_1846 AsnC family transcriptional regulator; AsnC family transcriptional regulator 578672..579226 Acidimicrobium ferrooxidans DSM 10331 8322633 YP_003109202.1 CDS Afer_0575 NC_013124.1 579326 580690 D PFAM: aminotransferase class-III; KEGG: ace:Acel_1287 hypothetical protein; hypothetical protein 579326..580690 Acidimicrobium ferrooxidans DSM 10331 8322634 YP_003109203.1 CDS Afer_0576 NC_013124.1 580736 582745 D PFAM: TrwC relaxase; KEGG: fal:FRAAL6333 conjugal transfer protein TraA; TrwC relaxase 580736..582745 Acidimicrobium ferrooxidans DSM 10331 8322635 YP_003109204.1 CDS Afer_0577 NC_013124.1 582820 583704 D KEGG: oih:OB1441 hypothetical protein; hypothetical protein 582820..583704 Acidimicrobium ferrooxidans DSM 10331 8322636 YP_003109205.1 CDS Afer_0578 NC_013124.1 583734 585563 D TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor G domain protein; elongation factor Tu domain 2 protein; KEGG: fra:Francci3_3865 GTP-binding protein TypA; GTP-binding protein TypA 583734..585563 Acidimicrobium ferrooxidans DSM 10331 8322637 YP_003109206.1 CDS Afer_0579 NC_013124.1 585531 585881 R hypothetical protein complement(585531..585881) Acidimicrobium ferrooxidans DSM 10331 8322638 YP_003109207.1 CDS Afer_0580 NC_013124.1 585868 586857 R PFAM: conserved hypothetical protein; KEGG: fal:FRAAL0333 hypothetical protein; hypothetical protein complement(585868..586857) Acidimicrobium ferrooxidans DSM 10331 8322639 YP_003109208.1 CDS Afer_0581 NC_013124.1 586907 588148 D PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: stp:Strop_3418 amine oxidase; amine oxidase 586907..588148 Acidimicrobium ferrooxidans DSM 10331 8322640 YP_003109209.1 CDS Afer_0582 NC_013124.1 588145 589488 D PFAM: carboxyl transferase; KEGG: saq:Sare_0802 carboxyl transferase; carboxyl transferase 588145..589488 Acidimicrobium ferrooxidans DSM 10331 8322641 YP_003109210.1 CDS Afer_0583 NC_013124.1 589495 591291 D KEGG: art:Arth_2181 transcriptional regulator-like protein; hypothetical protein 589495..591291 Acidimicrobium ferrooxidans DSM 10331 8322642 YP_003109211.1 CDS Afer_0584 NC_013124.1 591281 591706 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: nfa:nfa31580 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN- binding protein 591281..591706 Acidimicrobium ferrooxidans DSM 10331 8322643 YP_003109212.1 CDS Afer_0585 NC_013124.1 591747 592289 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sma:SAP1p77 MarR family transcriptional regulator; MarR family transcriptional regulator 591747..592289 Acidimicrobium ferrooxidans DSM 10331 8322644 YP_003109213.1 CDS Afer_0586 NC_013124.1 592449 594785 D PFAM: MMPL domain protein; KEGG: sco:SCO5084 hypothetical protein; MMPL domain-containing protein 592449..594785 Acidimicrobium ferrooxidans DSM 10331 8322645 YP_003109214.1 CDS Afer_0587 NC_013124.1 594796 595593 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: pla:Plav_2620 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 594796..595593 Acidimicrobium ferrooxidans DSM 10331 8322646 YP_003109215.1 CDS Afer_0588 NC_013124.1 595607 597154 D PFAM: AMP-dependent synthetase and ligase; KEGG: fra:Francci3_2165 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase 595607..597154 Acidimicrobium ferrooxidans DSM 10331 8322647 YP_003109216.1 CDS Afer_0589 NC_013124.1 597151 597948 R PFAM: LmbE family protein; KEGG: rca:Rcas_1145 LmbE family protein; LmbE family protein complement(597151..597948) Acidimicrobium ferrooxidans DSM 10331 8322648 YP_003109217.1 CDS Afer_0590 NC_013124.1 597945 598565 R PFAM: protein of unknown function DUF121; KEGG: nfa:nfa42070 hypothetical protein; hypothetical protein complement(597945..598565) Acidimicrobium ferrooxidans DSM 10331 8322649 YP_003109218.1 CDS Afer_0591 NC_013124.1 598595 599197 D PFAM: ribonuclease HII/HIII; KEGG: hha:Hhal_1454 ribonuclease H; Ribonuclease H 598595..599197 Acidimicrobium ferrooxidans DSM 10331 8322650 YP_003109219.1 CDS Afer_0592 NC_013124.1 599995 600897 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: fal:FRAAL1392 hypothetical protein; hypothetical protein 599995..600897 Acidimicrobium ferrooxidans DSM 10331 8322651 YP_003109220.1 CDS Afer_0593 NC_013124.1 600925 601038 D hypothetical protein 600925..601038 Acidimicrobium ferrooxidans DSM 10331 8322652 YP_003109221.1 CDS Afer_0594 NC_013124.1 601035 601829 R hypothetical protein complement(601035..601829) Acidimicrobium ferrooxidans DSM 10331 8322653 YP_003109222.1 CDS Afer_0595 NC_013124.1 601924 602163 R hypothetical protein complement(601924..602163) Acidimicrobium ferrooxidans DSM 10331 8322654 YP_003109223.1 CDS Afer_0596 NC_013124.1 602409 602633 D hypothetical protein 602409..602633 Acidimicrobium ferrooxidans DSM 10331 8322655 YP_003109224.1 CDS Afer_0597 NC_013124.1 602630 603475 D PFAM: alpha/beta hydrolase fold; KEGG: sru:SRU_2341 alpha/beta fold family hydrolase; alpha/beta hydrolase fold protein 602630..603475 Acidimicrobium ferrooxidans DSM 10331 8322656 YP_003109225.1 CDS Afer_0598 NC_013124.1 603468 605048 D PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: sru:SRU_2342 Mur ligase family protein; Mur ligase middle domain-containing protein 603468..605048 Acidimicrobium ferrooxidans DSM 10331 8322657 YP_003109226.1 CDS Afer_0599 NC_013124.1 605094 606203 D PFAM: D-alanine--D-alanine ligase domain protein; KEGG: sru:SRU_2197 D-alanine--D-alanine ligase; D-alanine--D-alanine ligase 605094..606203 Acidimicrobium ferrooxidans DSM 10331 8322658 YP_003109227.1 CDS Afer_0600 NC_013124.1 606241 606939 D PFAM: membrane-flanked domain; KEGG: hau:Haur_2709 membrane-flanked domain- containing protein; membrane-flanked domain-containing protein 606241..606939 Acidimicrobium ferrooxidans DSM 10331 8322659 YP_003109228.1 CDS Afer_0601 NC_013124.1 606936 607736 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: esa:ESA_03129 hypothetical protein; type 11 methyltransferase 606936..607736 Acidimicrobium ferrooxidans DSM 10331 8322660 YP_003109229.1 CDS Afer_0602 NC_013124.1 607720 608490 D PFAM: alpha/beta hydrolase fold; KEGG: fra:Francci3_3910 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 607720..608490 Acidimicrobium ferrooxidans DSM 10331 8322661 YP_003109230.1 CDS Afer_0603 NC_013124.1 608487 609608 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: mav:MAV_1284 Mcr protein; L-carnitine dehydratase/bile acid-inducible protein F 608487..609608 Acidimicrobium ferrooxidans DSM 10331 8322662 YP_003109231.1 CDS Afer_0604 NC_013124.1 609610 610809 D KEGG: fra:Francci3_2361 hypothetical protein; hypothetical protein 609610..610809 Acidimicrobium ferrooxidans DSM 10331 8322663 YP_003109232.1 CDS Afer_0605 NC_013124.1 610869 611849 D PFAM: Ion transport 2 domain protein ; TrkA-N domain protein; KEGG: sru:SRU_0409 potassium channel; Ion transport 2 domain-containing protein 610869..611849 Acidimicrobium ferrooxidans DSM 10331 8322664 YP_003109233.1 CDS Afer_0606 NC_013124.1 611816 613477 R KEGG: fra:Francci3_2206 hypothetical protein; hypothetical protein complement(611816..613477) Acidimicrobium ferrooxidans DSM 10331 8322665 YP_003109234.1 CDS Afer_0607 NC_013124.1 613545 614225 R PFAM: GCN5-related N-acetyltransferase; KEGG: art:Arth_1175 GCN5-related N- acetyltransferase; GCN5-like N-acetyltransferase complement(613545..614225) Acidimicrobium ferrooxidans DSM 10331 8322666 YP_003109235.1 CDS Afer_0608 NC_013124.1 614273 614986 D PFAM: peptidase C26; glutamine amidotransferase class-I; KEGG: mta:Moth_2164 peptidase C26; peptidase C26 614273..614986 Acidimicrobium ferrooxidans DSM 10331 8322667 YP_003109236.1 CDS Afer_0609 NC_013124.1 614983 615732 D TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: tbd:Tbd_0690 HAD family hydrolase; HAD-superfamily hydrolase 614983..615732 Acidimicrobium ferrooxidans DSM 10331 8322668 YP_003109237.1 CDS Afer_0610 NC_013124.1 615856 616260 D PFAM: peptidase S24 and S26 domain protein; KEGG: sde:Sde_2043 folylpolyglutamate synthetase; phage repressor 615856..616260 Acidimicrobium ferrooxidans DSM 10331 8322669 YP_003109238.1 CDS Afer_0611 NC_013124.1 616591 616956 R KEGG: mpo:Mpop_0738 hypothetical protein; hypothetical protein complement(616591..616956) Acidimicrobium ferrooxidans DSM 10331 8322670 YP_003109239.1 CDS Afer_0612 NC_013124.1 616953 619400 R PFAM: peptidase S45 penicillin amidase; KEGG: tac:Ta1462 penicillin amidase precursor related protein; peptidase S45 penicillin amidase complement(616953..619400) Acidimicrobium ferrooxidans DSM 10331 8322671 YP_003109240.1 CDS Afer_0613 NC_013124.1 619456 619830 R KEGG: cti:RALTA_B0059 conserved hypothetical protein; exported protein; contains cristalline beta-sheet repeat similar to EBV nuclear antigen 1 (EBNA- 1) and fibroin; hypothetical protein complement(619456..619830) Acidimicrobium ferrooxidans DSM 10331 8322672 YP_003109241.1 CDS Afer_0614 NC_013124.1 619887 620657 D KEGG: pap:PSPA7_5451 hypothetical protein; hypothetical protein 619887..620657 Acidimicrobium ferrooxidans DSM 10331 8322673 YP_003109242.1 CDS Afer_0615 NC_013124.1 620658 621488 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; sucrose-6F-phosphate phosphohydrolase; KEGG: kra:Krad_0255 HAD family hydrolase; HAD-superfamily hydrolase 620658..621488 Acidimicrobium ferrooxidans DSM 10331 8322674 YP_003109243.1 CDS Afer_0616 NC_013124.1 621516 622175 D hypothetical protein 621516..622175 Acidimicrobium ferrooxidans DSM 10331 8322675 YP_003109244.1 CDS Afer_0617 NC_013124.1 622196 622969 D PFAM: inositol monophosphatase; KEGG: mth:MTH871 bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase; inositol monophosphatase 622196..622969 Acidimicrobium ferrooxidans DSM 10331 8322676 YP_003109245.1 CDS Afer_0618 NC_013124.1 622966 623433 D PFAM: GCN5-related N-acetyltransferase; KEGG: afw:Anae109_1562 GCN5-related N- acetyltransferase; GCN5-like N-acetyltransferase 622966..623433 Acidimicrobium ferrooxidans DSM 10331 8322677 YP_003109246.1 CDS Afer_0619 NC_013124.1 624057 625013 R KEGG: maq:Maqu_0232 hypothetical protein; hypothetical protein complement(624057..625013) Acidimicrobium ferrooxidans DSM 10331 8322678 YP_003109247.1 CDS Afer_0620 NC_013124.1 625457 626605 D KEGG: mem:Memar_0869 hypothetical protein; hypothetical protein 625457..626605 Acidimicrobium ferrooxidans DSM 10331 8322679 YP_003109248.1 CDS Afer_0621 NC_013124.1 626952 627884 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: lpl:lp_2959 transport protein; hypothetical protein complement(626952..627884) Acidimicrobium ferrooxidans DSM 10331 8322681 YP_003109249.1 CDS Afer_0622 NC_013124.1 627962 629344 D PFAM: malic protein NAD-binding; amino acid-binding ACT domain protein; malic protein domain protein; KEGG: nca:Noca_0113 malate dehydrogenase; Malate dehydrogenase 627962..629344 Acidimicrobium ferrooxidans DSM 10331 8322682 YP_003109250.1 CDS Afer_0623 NC_013124.1 629331 630053 R KEGG: SILV; silver homolog (mouse); hypothetical protein complement(629331..630053) Acidimicrobium ferrooxidans DSM 10331 8322683 YP_003109251.1 CDS Afer_0624 NC_013124.1 630128 631126 D PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sew:SeSA_A4159 tyrosine recombinase XerC; integrase family protein 630128..631126 Acidimicrobium ferrooxidans DSM 10331 8322684 YP_003109252.1 CDS Afer_0625 NC_013124.1 631123 631887 D KEGG: ace:Acel_1546 RNA polymerase sigma factor WhiG; TIGRFAM: RNA polymerase sigma factor, FliA/WhiG family; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 4 domain protein; sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma- 70 region 3 domain protein; RNA polymerase sigma-28 subunit FliA/WhiG 631123..631887 Acidimicrobium ferrooxidans DSM 10331 8322685 YP_003109253.1 CDS Afer_0626 NC_013124.1 632016 632729 D TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: msm:MSMEG_2519 ribosomal protein S2; 30S ribosomal protein S2 632016..632729 Acidimicrobium ferrooxidans DSM 10331 8322686 YP_003109254.1 CDS Afer_0627 NC_013124.1 632762 633553 D TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerization; ubiquitin-associated- domain-containing protein; KEGG: ace:Acel_1541 elongation factor Ts; translation elongation factor Ts 632762..633553 Acidimicrobium ferrooxidans DSM 10331 8322687 YP_003109255.1 CDS Afer_0628 NC_013124.1 633556 634275 D TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: hypothetical protein; K09903 uridylate kinase; uridylate kinase 633556..634275 Acidimicrobium ferrooxidans DSM 10331 8322688 YP_003109256.1 CDS Afer_0629 NC_013124.1 634275 634847 D TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: ace:Acel_1539 ribosome recycling factor; ribosome recycling factor 634275..634847 Acidimicrobium ferrooxidans DSM 10331 8322689 YP_003109257.1 CDS Afer_0630 NC_013124.1 634856 636283 D PFAM: phosphatidate cytidylyltransferase; KEGG: sth:STH1497 phosphatidate cytidylyltransferase; phosphatidate cytidylyltransferase 634856..636283 Acidimicrobium ferrooxidans DSM 10331 8322690 YP_003109258.1 CDS Afer_0631 NC_013124.1 636303 637460 D KEGG: dau:Daud_0615 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein; 1-deoxy-D-xylulose 5-phosphate reductoisomerase 636303..637460 Acidimicrobium ferrooxidans DSM 10331 8322691 YP_003109259.1 CDS Afer_0632 NC_013124.1 637453 638739 D PFAM: peptidase M50; SMART: PDZ/DHR/GLGF domain protein; KEGG: ace:Acel_1523 peptidase M50; peptidase M50 637453..638739 Acidimicrobium ferrooxidans DSM 10331 8322692 YP_003109260.1 CDS Afer_0633 NC_013124.1 638754 639941 D KEGG: ace:Acel_1522 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate synthase; PFAM: IspG family protein; 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase 638754..639941 Acidimicrobium ferrooxidans DSM 10331 8322693 YP_003109261.1 CDS Afer_0634 NC_013124.1 639953 641671 D KEGG: mta:Moth_1044 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon- binding domain protein; prolyl-tRNA synthetase 639953..641671 Acidimicrobium ferrooxidans DSM 10331 8322694 YP_003109262.1 CDS Afer_0635 NC_013124.1 641774 642253 D KEGG: maq:Maqu_3350 hypothetical protein; hypothetical protein 641774..642253 Acidimicrobium ferrooxidans DSM 10331 8322695 YP_003109263.1 CDS Afer_0636 NC_013124.1 642243 643235 D KEGG: hmo:HM1_2310 transcription termination factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; NusA antitermination factor 642243..643235 Acidimicrobium ferrooxidans DSM 10331 8322696 YP_003109264.1 CDS Afer_0637 NC_013124.1 643298 643510 D KEGG: pmj:P9211_16151 nucleic-acid-binding protein implicated in transcription termination; hypothetical protein 643298..643510 Acidimicrobium ferrooxidans DSM 10331 8322697 YP_003109265.1 CDS Afer_0638 NC_013124.1 643567 646224 D TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; GTP-binding protein HSR1-related; translation initiation factor IF-2 domain protein; KEGG: ace:Acel_1515 translation initiation factor IF-2; translation initiation factor IF-2 643567..646224 Acidimicrobium ferrooxidans DSM 10331 8322698 YP_003109266.1 CDS Afer_0639 NC_013124.1 646227 646610 D TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: csa:Csal_3073 ribosome-binding factor A; ribosome-binding factor A 646227..646610 Acidimicrobium ferrooxidans DSM 10331 8322699 YP_003109267.1 CDS Afer_0640 NC_013124.1 646582 647478 D TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; tRNA pseudouridine synthase B; KEGG: ace:Acel_1512 tRNA pseudouridine synthase B; tRNA pseudouridine synthase B 646582..647478 Acidimicrobium ferrooxidans DSM 10331 8322700 YP_003109268.1 CDS Afer_0641 NC_013124.1 647475 648419 D TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; KEGG: lxx:Lxx07280 riboflavin kinase/FMN adenyltransferase; riboflavin biosynthesis protein RibF 647475..648419 Acidimicrobium ferrooxidans DSM 10331 8322701 YP_003109269.1 CDS Afer_0642 NC_013124.1 648497 648754 D TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: cbe:Cbei_1207 30S ribosomal protein S15; 30S ribosomal protein S15 648497..648754 Acidimicrobium ferrooxidans DSM 10331 8322702 YP_003109270.1 CDS Afer_0643 NC_013124.1 648815 651193 D KEGG: ace:Acel_1508 polynucleotide phosphorylase/polyadenylase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; RNA binding S1 domain protein; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; KH type 1 domain protein; SMART: RNA binding S1 domain protein; KH domain protein; polyribonucleotide nucleotidyltransferase 648815..651193 Acidimicrobium ferrooxidans DSM 10331 8322703 YP_003109271.1 CDS Afer_0644 NC_013124.1 651374 652195 D PFAM: inositol monophosphatase; KEGG: stp:Strop_1476 inositol-phosphate phosphatase; Inositol-phosphate phosphatase 651374..652195 Acidimicrobium ferrooxidans DSM 10331 8322704 YP_003109272.1 CDS Afer_0645 NC_013124.1 652206 653006 D KEGG: hmo:HM1_2327 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase; dihydrodipicolinate reductase 652206..653006 Acidimicrobium ferrooxidans DSM 10331 8322705 YP_003109273.1 CDS Afer_0646 NC_013124.1 653026 653955 D TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase; KEGG: cvi:CV_2048 dihydrodipicolinate synthase; dihydrodipicolinate synthase 653026..653955 Acidimicrobium ferrooxidans DSM 10331 8322706 YP_003109274.1 CDS Afer_0647 NC_013124.1 653942 655597 D PFAM: beta-lactamase domain protein; RNA- metabolising metallo-beta-lactamase; KEGG: swo:Swol_1268 metallo-beta-lactamase family protein; beta-lactamase domain-containing protein 653942..655597 Acidimicrobium ferrooxidans DSM 10331 8322707 YP_003109275.1 CDS Afer_0648 NC_013124.1 655745 657919 D PFAM: cell division FtsK/SpoIIIE; SMART: AAA ATPase; KEGG: ace:Acel_1501 cell division FtsK/SpoIIIE; cell division FtsK/SpoIIIE 655745..657919 Acidimicrobium ferrooxidans DSM 10331 8322708 YP_003109276.1 CDS Afer_0649 NC_013124.1 658001 659251 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: sco:SCO4439 D-alanyl-D-alanine carboxypeptidase; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 658001..659251 Acidimicrobium ferrooxidans DSM 10331 8322709 YP_003109277.1 CDS Afer_0650 NC_013124.1 659251 660186 D PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: mta:Moth_1305 homoserine kinase; Homoserine kinase 659251..660186 Acidimicrobium ferrooxidans DSM 10331 8322710 YP_003109278.1 CDS Afer_0651 NC_013124.1 660188 660760 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: mbb:BCG_2762c pgp synthase pgsA3; CDP-alcohol phosphatidyltransferase 660188..660760 Acidimicrobium ferrooxidans DSM 10331 8322711 YP_003109279.1 CDS Afer_0652 NC_013124.1 660772 662034 D TIGRFAM: competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; KEGG: fal:FRAAL5732 competence-inducible (CinA- like) protein; competence/damage-inducible protein CinA 660772..662034 Acidimicrobium ferrooxidans DSM 10331 8322712 YP_003109280.1 CDS Afer_0653 NC_013124.1 662101 663141 D KEGG: saq:Sare_1389 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase; recA protein 662101..663141 Acidimicrobium ferrooxidans DSM 10331 8322713 YP_003109281.1 CDS Afer_0654 NC_013124.1 663185 664648 D KEGG: mkm:Mkms_2203 RNA modification enzyme, MiaB family; TIGRFAM: RNA modification enzyme, MiaB family; tRNA- i(6)A37 thiotransferase enzyme MiaB; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB; MiaB family RNA modification protein 663185..664648 Acidimicrobium ferrooxidans DSM 10331 8322714 YP_003109282.1 CDS Afer_0655 NC_013124.1 664588 665721 R PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: gtn:GTNG_0815 N-acylamino acid racemase; Mandelate racemase/muconate lactonizing protein complement(664588..665721) Acidimicrobium ferrooxidans DSM 10331 8322715 YP_003109283.1 CDS Afer_0656 NC_013124.1 665735 666667 D PFAM: tRNA isopentenyltransferase; KEGG: blj:BLD_0277 tRNA delta-2-isopentenyl pyrophosphate transferase; tRNA isopentenyltransferase 665735..666667 Acidimicrobium ferrooxidans DSM 10331 8322716 YP_003109284.1 CDS Afer_0657 NC_013124.1 666664 667428 D KEGG: msm:MSMEG_2735 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase; diaminopimelate epimerase 666664..667428 Acidimicrobium ferrooxidans DSM 10331 8322717 YP_003109285.1 CDS Afer_0658 NC_013124.1 667425 668702 D TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: pth:PTH_2120 GTPase; GTP-binding proten HflX 667425..668702 Acidimicrobium ferrooxidans DSM 10331 8322718 YP_003109286.1 CDS Afer_0659 NC_013124.1 668707 669792 D PFAM: aminotransferase class I and II; KEGG: fre:Franean1_0872 N-succinyldiaminopimelate aminotransferase; class I and II aminotransferase 668707..669792 Acidimicrobium ferrooxidans DSM 10331 8322719 YP_003109287.1 CDS Afer_0660 NC_013124.1 669789 670604 D KEGG: ace:Acel_1844 2,3,4,5-tetrahydropyridine-2- carboxylate N-succinyltransferase; 2,3,4,5-tetrahydropyridine-2,6-dicarboxylateN-su ccinyltransferase 669789..670604 Acidimicrobium ferrooxidans DSM 10331 8322720 YP_003109288.1 CDS Afer_0661 NC_013124.1 670601 671635 D PFAM: peptidase M20; peptidase dimerization domain protein; KEGG: tfu:Tfu_0495 dipeptidase; peptidase M20 670601..671635 Acidimicrobium ferrooxidans DSM 10331 8322721 YP_003109289.1 CDS Afer_0662 NC_013124.1 671886 672755 R PFAM: Integrase catalytic region; KEGG: mva:Mvan_5060 integrase catalytic subunit; integrase catalytic subunit complement(671886..672755) Acidimicrobium ferrooxidans DSM 10331 8322722 YP_003109290.1 CDS Afer_0663 NC_013124.1 672755 673075 R PFAM: transposase IS3/IS911 family protein; KEGG: mva:Mvan_5059 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(672755..673075) Acidimicrobium ferrooxidans DSM 10331 8322723 YP_003109291.1 CDS Afer_0664 NC_013124.1 674017 674343 D KEGG: chy:CHY_1117 ISChy4, transposase; ISChy4, transposase 674017..674343 Acidimicrobium ferrooxidans DSM 10331 8322724 YP_003109292.1 CDS Afer_0665 NC_013124.1 675023 676024 R PFAM: NMT1/THI5 like domain protein; KEGG: rpc:RPC_0844 ABC transporter substrate- binding protein; NMT1/THI5 like domain-containing protein complement(675023..676024) Acidimicrobium ferrooxidans DSM 10331 8322725 YP_003109293.1 CDS Afer_0666 NC_013124.1 676056 676871 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eba:p2A122 taurine transport system permease protein; binding-protein-dependent transport systems inner membrane component complement(676056..676871) Acidimicrobium ferrooxidans DSM 10331 8322726 YP_003109294.1 CDS Afer_0667 NC_013124.1 676868 677689 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mem:Memar_0849 ABC transporter-related protein; ABC transporter-like protein complement(676868..677689) Acidimicrobium ferrooxidans DSM 10331 8322727 YP_003109295.1 CDS Afer_0668 NC_013124.1 677703 678326 R KEGG: nfa:nfa38000 LexA repressor; TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; peptidase S24 and S26 domain protein; SOS-response transcriptional repressor, LexA complement(677703..678326) Acidimicrobium ferrooxidans DSM 10331 8322728 YP_003109296.1 CDS Afer_0669 NC_013124.1 678436 678918 D PFAM: ATP-cone domain protein; KEGG: xau:Xaut_4277 ATP-cone domain-containing protein; ATP-cone domain-containing protein 678436..678918 Acidimicrobium ferrooxidans DSM 10331 8322729 YP_003109297.1 CDS Afer_0670 NC_013124.1 678947 679411 D KEGG: tfu:Tfu_0325 hypothetical protein; hypothetical protein 678947..679411 Acidimicrobium ferrooxidans DSM 10331 8322730 YP_003109298.1 CDS Afer_0671 NC_013124.1 679421 679735 D KEGG: reh:H16_A1148 predicted NADH:ubiquinone oxidoreductase,subunit RnfB; NADH:ubiquinone oxidoreductase,subunit RnfB 679421..679735 Acidimicrobium ferrooxidans DSM 10331 8322731 YP_003109299.1 CDS Afer_0672 NC_013124.1 680268 680867 D KEGG: fra:Francci3_0169 kelch repeat-containing protein; hypothetical protein 680268..680867 Acidimicrobium ferrooxidans DSM 10331 8322732 YP_003109300.1 CDS Afer_0673 NC_013124.1 681103 681972 R PFAM: Integrase catalytic region; KEGG: mva:Mvan_5060 integrase catalytic subunit; integrase catalytic subunit complement(681103..681972) Acidimicrobium ferrooxidans DSM 10331 8322733 YP_003109301.1 CDS Afer_0674 NC_013124.1 681972 682292 R PFAM: transposase IS3/IS911 family protein; KEGG: mva:Mvan_5059 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(681972..682292) Acidimicrobium ferrooxidans DSM 10331 8322734 YP_003109302.1 CDS Afer_0676 NC_013124.1 682871 683311 R PFAM: PilT protein domain protein; KEGG: mtf:TBFG_10560 hypothetical protein; PilT protein domain-containing protein complement(682871..683311) Acidimicrobium ferrooxidans DSM 10331 8322736 YP_003109303.1 CDS Afer_0678 NC_013124.1 683886 684215 R PFAM: transposase IS3/IS911 family protein; KEGG: rxy:Rxyl_1861 transposase IS3/IS911; transposase IS3/IS911 family protein complement(683886..684215) Acidimicrobium ferrooxidans DSM 10331 8322738 YP_003109304.1 CDS Afer_0679 NC_013124.1 684428 685435 D PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; aminotransferase class I and II; KEGG: afw:Anae109_3740 threonine aldolase; aromatic amino acid beta-eliminating lyase/threonine aldolase 684428..685435 Acidimicrobium ferrooxidans DSM 10331 8322739 YP_003109305.1 CDS Afer_0680 NC_013124.1 685452 686156 D PFAM: LmbE family protein; KEGG: cau:Caur_0355 LmbE family protein; LmbE family protein 685452..686156 Acidimicrobium ferrooxidans DSM 10331 8322740 YP_003109306.1 CDS Afer_0681 NC_013124.1 686168 686548 D KEGG: afw:Anae109_0918 TfuA domain-containing protein; hypothetical protein 686168..686548 Acidimicrobium ferrooxidans DSM 10331 8322741 YP_003109307.1 CDS Afer_0682 NC_013124.1 686663 687019 D KEGG: fra:Francci3_1402 hypothetical protein; hypothetical protein 686663..687019 Acidimicrobium ferrooxidans DSM 10331 8322742 YP_003109308.1 CDS Afer_0683 NC_013124.1 687016 687258 D hypothetical protein 687016..687258 Acidimicrobium ferrooxidans DSM 10331 8322743 YP_003109309.1 CDS Afer_0684 NC_013124.1 687301 687900 D PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: sgr:SGR_4876 endonuclease; HNH endonuclease 687301..687900 Acidimicrobium ferrooxidans DSM 10331 8322744 YP_003109310.1 CDS Afer_0685 NC_013124.1 688423 688866 D KEGG: rpa:RPA4458 isoprenylcysteine carboxyl methyltransferase; isoprenylcysteine carboxyl methyltransferase 688423..688866 Acidimicrobium ferrooxidans DSM 10331 8322745 YP_003109311.1 CDS Afer_0686 NC_013124.1 688818 689579 R TIGRFAM: conserved hypothetical protein; KEGG: afw:Anae109_3061 hypothetical protein; hypothetical protein complement(688818..689579) Acidimicrobium ferrooxidans DSM 10331 8322746 YP_003109312.1 CDS Afer_0687 NC_013124.1 689866 690744 R PFAM: Integrase catalytic region; KEGG: rha:RHA1_ro11026 transposase; integrase catalytic subunit complement(689866..690744) Acidimicrobium ferrooxidans DSM 10331 8322747 YP_003109313.1 CDS Afer_0690 NC_013124.1 692423 692743 D PFAM: transposase IS3/IS911 family protein; KEGG: mva:Mvan_5059 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 692423..692743 Acidimicrobium ferrooxidans DSM 10331 8322750 YP_003109314.1 CDS Afer_0691 NC_013124.1 692743 693612 D PFAM: Integrase catalytic region; KEGG: mva:Mvan_5060 integrase catalytic subunit; integrase catalytic subunit 692743..693612 Acidimicrobium ferrooxidans DSM 10331 8322751 YP_003109315.1 CDS Afer_0692 NC_013124.1 693816 694745 R KEGG: lxx:Lxx09720 thiamine-monophosphate kinase; TIGRFAM: thiamine-monophosphate kinase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; thiamine-monophosphate kinase complement(693816..694745) Acidimicrobium ferrooxidans DSM 10331 8322752 YP_003109316.1 CDS Afer_0693 NC_013124.1 694852 696648 D catalyzes the phosphorylation and decarboxylation of oxaloacetate to form phosphoenolpyruvate using GTP; phosphoenolpyruvate carboxykinase 694852..696648 Acidimicrobium ferrooxidans DSM 10331 8322753 YP_003109317.1 CDS Afer_0694 NC_013124.1 696670 697917 R PFAM: major facilitator superfamily MFS_1; KEGG: ace:Acel_1472 major facilitator transporter; major facilitator superfamily protein complement(696670..697917) Acidimicrobium ferrooxidans DSM 10331 8322754 YP_003109318.1 CDS Afer_0695 NC_013124.1 697966 698352 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: fra:Francci3_4252 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN- binding protein complement(697966..698352) Acidimicrobium ferrooxidans DSM 10331 8322755 YP_003109319.1 CDS Afer_0696 NC_013124.1 698346 701786 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: ttj:TTHB116 acyl-CoA dehydrogenase, short- chain specific ( AidB protein); acyl-CoA dehydrogenase domain-containing protein complement(698346..701786) Acidimicrobium ferrooxidans DSM 10331 8322756 YP_003109320.1 CDS Afer_0697 NC_013124.1 701780 703354 R PFAM: gamma-glutamyltranspeptidase; KEGG: bbr:BB0978 gamma-glutamyltranspeptidase precursor; Gamma-glutamyltransferase complement(701780..703354) Acidimicrobium ferrooxidans DSM 10331 8322757 YP_003109321.1 CDS Afer_0698 NC_013124.1 703638 704693 D PFAM: alanine dehydrogenase/PNT domain protein; KEGG: gtn:GTNG_2677 alanine dehydrogenase; alanine dehydrogenase/PNT domain-containing protein 703638..704693 Acidimicrobium ferrooxidans DSM 10331 8322758 YP_003109322.1 CDS Afer_0699 NC_013124.1 704693 706063 D PFAM: FAD dependent oxidoreductase; KEGG: ace:Acel_1280 FAD dependent oxidoreductase; FAD dependent oxidoreductase 704693..706063 Acidimicrobium ferrooxidans DSM 10331 8322759 YP_003109323.1 CDS Afer_0700 NC_013124.1 706139 707404 D PFAM: aminotransferase class-III; KEGG: rca:Rcas_3219 aminotransferase class-III; class III aminotransferase 706139..707404 Acidimicrobium ferrooxidans DSM 10331 8322760 YP_003109324.1 CDS Afer_0701 NC_013124.1 707541 708734 R KEGG: scl:sce3939 hypothetical protein; hypothetical protein complement(707541..708734) Acidimicrobium ferrooxidans DSM 10331 8322761 YP_003109325.1 CDS Afer_0702 NC_013124.1 708731 710302 R PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: nca:Noca_1614 ATPase domain-containing protein; histidine kinase complement(708731..710302) Acidimicrobium ferrooxidans DSM 10331 8322762 YP_003109326.1 CDS Afer_0703 NC_013124.1 710312 711022 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: rha:RHA1_ro08012 response regulator, two- component system; winged helix family two component transcriptional regulator complement(710312..711022) Acidimicrobium ferrooxidans DSM 10331 8322763 YP_003109327.1 CDS Afer_0704 NC_013124.1 711072 711668 R PFAM: nitroreductase; KEGG: sdn:Sden_2315 nitroreductase; nitroreductase complement(711072..711668) Acidimicrobium ferrooxidans DSM 10331 8322764 YP_003109328.1 CDS Afer_0705 NC_013124.1 711665 712270 R PFAM: beta-lactamase domain protein; KEGG: sen:SACE_5316 metallo-beta-lactamase superfamily protein; beta-lactamase domain-containing protein complement(711665..712270) Acidimicrobium ferrooxidans DSM 10331 8322765 YP_003109329.1 CDS Afer_0706 NC_013124.1 712403 712822 D hypothetical protein 712403..712822 Acidimicrobium ferrooxidans DSM 10331 8322766 YP_003109330.1 CDS Afer_0707 NC_013124.1 713011 713370 D TIGRFAM: alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: rha:RHA1_ro11235 carboxymuconolactone decarboxylase; alkylhydroperoxidase-like protein 713011..713370 Acidimicrobium ferrooxidans DSM 10331 8322767 YP_003109331.1 CDS Afer_0708 NC_013124.1 713352 714143 R PFAM: RimK domain protein ATP-grasp; protein of unknown function DUF201; KEGG: mpn:MPN015 hypothetical protein; RimK domain-containing protein ATP-grasp complement(713352..714143) Acidimicrobium ferrooxidans DSM 10331 8322768 YP_003109332.1 CDS Afer_0709 NC_013124.1 714140 714979 R TIGRFAM: alpha-L-glutamate ligase, RimK family; PFAM: RimK domain protein ATP-grasp; KEGG: oih:OB2059 hypothetical protein; RimK family alpha-L-glutamate ligase complement(714140..714979) Acidimicrobium ferrooxidans DSM 10331 8322769 YP_003109333.1 CDS Afer_0710 NC_013124.1 715064 715720 D KEGG: reh:H16_A3625 predicted alpha/beta hydrolase BEM46; hypothetical protein 715064..715720 Acidimicrobium ferrooxidans DSM 10331 8322770 YP_003109334.1 CDS Afer_0711 NC_013124.1 715717 716412 R KEGG: ace:Acel_0990 thiamine-phosphate pyrophosphorylase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase; thiamine-phosphate pyrophosphorylase complement(715717..716412) Acidimicrobium ferrooxidans DSM 10331 8322771 YP_003109335.1 CDS Afer_0712 NC_013124.1 716409 716996 R TIGRFAM: HhH-GPD family protein; PFAM: HhH-GPD family protein; KEGG: sma:SAV_4172 hypothetical protein; HhH-GPD family protein complement(716409..716996) Acidimicrobium ferrooxidans DSM 10331 8322772 YP_003109336.1 CDS aceE NC_013124.1 717041 719779 R E1 component; part of pyruvate dehydrogenase; forms a complex with DlaT and LpdC; pyruvate dehydrogenase subunit E1 complement(717041..719779) Acidimicrobium ferrooxidans DSM 10331 8322773 YP_003109337.1 CDS Afer_0714 NC_013124.1 719836 720282 D PFAM: ribonuclease H; KEGG: nca:Noca_0418 ribonuclease H; ribonuclease H 719836..720282 Acidimicrobium ferrooxidans DSM 10331 8322774 YP_003109338.1 CDS Afer_0715 NC_013124.1 720319 721077 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: xau:Xaut_4664 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 720319..721077 Acidimicrobium ferrooxidans DSM 10331 8322775 YP_003109339.1 CDS Afer_0716 NC_013124.1 721122 722042 D PFAM: aldo/keto reductase; KEGG: mpa:MAP3260 hypothetical protein; aldo/keto reductase 721122..722042 Acidimicrobium ferrooxidans DSM 10331 8322776 YP_003109340.1 CDS Afer_0717 NC_013124.1 722123 723502 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerization region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: ace:Acel_0936 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 722123..723502 Acidimicrobium ferrooxidans DSM 10331 8322777 YP_003109341.1 CDS Afer_0718 NC_013124.1 723495 725117 D PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein; KEGG: fre:Franean1_1779 2-oxoglutarate dehydrogenase E2 component; hypothetical protein 723495..725117 Acidimicrobium ferrooxidans DSM 10331 8322778 YP_003109342.1 CDS Afer_0719 NC_013124.1 725114 726721 D catalyzes the radical-mediated insertion of two sulfur atoms into an acyl carrier protein (ACP) bound to an octanoyl group to produce a lipoyl group; lipoyl synthase 725114..726721 Acidimicrobium ferrooxidans DSM 10331 8322779 YP_003109343.1 CDS Afer_0720 NC_013124.1 726718 727839 D PFAM: peptidase M24; creatinase; KEGG: sma:SAV_2161 peptidase; peptidase M24 726718..727839 Acidimicrobium ferrooxidans DSM 10331 8322780 YP_003109344.1 CDS Afer_0721 NC_013124.1 727905 729083 D PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein; KEGG: mxa:MXAN_2995 peptidase, S1C (protease Do) subfamily; peptidase S1 and S6 chymotrypsin/Hap 727905..729083 Acidimicrobium ferrooxidans DSM 10331 8322781 YP_003109345.1 CDS Afer_0722 NC_013124.1 729095 729664 R TIGRFAM: ATP/cobalamin adenosyltransferase; PFAM: cobalamin adenosyltransferase; KEGG: pzu:PHZ_c3149 hypothetical protein; ATP/cobalamin adenosyltransferase complement(729095..729664) Acidimicrobium ferrooxidans DSM 10331 8322782 YP_003109346.1 CDS Afer_0723 NC_013124.1 729699 733154 D TIGRFAM: methionine synthase; PFAM: homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; dihydropteroate synthase DHPS; Vitamin B12 dependent methionine synthase activation region; KEGG: saq:Sare_2325 methionine synthase; methionine synthase 729699..733154 Acidimicrobium ferrooxidans DSM 10331 8322783 YP_003109347.1 CDS Afer_0724 NC_013124.1 733236 734603 D PFAM: peptidase M17 leucyl aminopeptidase domain protein; KEGG: rba:RB12107 cytosol aminopeptidase; Leucyl aminopeptidase 733236..734603 Acidimicrobium ferrooxidans DSM 10331 8322784 YP_003109348.1 CDS Afer_0725 NC_013124.1 734551 735135 R hypothetical protein complement(734551..735135) Acidimicrobium ferrooxidans DSM 10331 8322785 YP_003109349.1 CDS Afer_0726 NC_013124.1 735270 736850 R KEGG: rxy:Rxyl_1283 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; methylmalonyl-CoA mutase, large subunit complement(735270..736850) Acidimicrobium ferrooxidans DSM 10331 8322786 YP_003109350.1 CDS Afer_0727 NC_013124.1 737019 737324 D KEGG: cau:Caur_3165 transcriptional coactivator/pterin dehydratase; transcriptional coactivator/pterin dehydratase 737019..737324 Acidimicrobium ferrooxidans DSM 10331 8322787 YP_003109351.1 CDS Afer_0728 NC_013124.1 737364 738530 R ATP-dependent adenylate transferase, transfers adenyl moiety to the MoeD subunit of molybdopterin synthase; molybdopterin biosynthesis protein MoeB complement(737364..738530) Acidimicrobium ferrooxidans DSM 10331 8322788 YP_003109352.1 CDS Afer_0729 NC_013124.1 738533 739195 R PFAM: nitroreductase; KEGG: kra:Krad_1547 nitroreductase; nitroreductase complement(738533..739195) Acidimicrobium ferrooxidans DSM 10331 8322789 YP_003109353.1 CDS Afer_0730 NC_013124.1 739200 740966 R PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: kra:Krad_3912 carbamoyl-phosphate synthase L chain ATP-binding; carbamoyl-phosphate synthase L chain ATP- binding complement(739200..740966) Acidimicrobium ferrooxidans DSM 10331 8322790 YP_003109354.1 CDS Afer_0731 NC_013124.1 741031 741807 D TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; KEGG: rpb:RPB_3299 biotin--acetyl-CoA-carboxylase ligase; biotin/acetyl-CoA-carboxylase ligase 741031..741807 Acidimicrobium ferrooxidans DSM 10331 8322791 YP_003109355.1 CDS Afer_0732 NC_013124.1 741804 742943 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: ace:Acel_0405 butyryl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 741804..742943 Acidimicrobium ferrooxidans DSM 10331 8322792 YP_003109356.1 CDS Afer_0733 NC_013124.1 742973 744040 D TIGRFAM: glucose-1-phosphate thymidyltransferase; PFAM: Nucleotidyl transferase; KEGG: fal:FRAAL1228 glucose-1-phosphate thymidylyltransferase (dTDP-glucose synthase) (dTDP- glucose pyrophosphorylase) (sugar-nucleotidylation enzyme); glucose-1-phosphate thymidyltransferase 742973..744040 Acidimicrobium ferrooxidans DSM 10331 8322793 YP_003109357.1 CDS Afer_0734 NC_013124.1 744117 745124 D TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: fra:Francci3_1669 dTDP-glucose 4,6- dehydratase; dTDP-glucose 4,6-dehydratase 744117..745124 Acidimicrobium ferrooxidans DSM 10331 8322794 YP_003109358.1 CDS Afer_0735 NC_013124.1 745121 745981 D KEGG: ace:Acel_0416 dTDP-4-dehydrorhamnose reductase; TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; polysaccharide biosynthesis protein CapD; 3-beta hydroxysteroid dehydrogenase/isomerase; NAD-dependent epimerase/dehydratase; dTDP-4-dehydrorhamnose reductase 745121..745981 Acidimicrobium ferrooxidans DSM 10331 8322795 YP_003109359.1 CDS Afer_0736 NC_013124.1 745974 746819 D KEGG: sen:SACE_6472 dTDP-rhamnosyl transferase; dTDP-rhamnosyl transferase 745974..746819 Acidimicrobium ferrooxidans DSM 10331 8322796 YP_003109360.1 CDS Afer_0737 NC_013124.1 746840 747478 D KEGG: similar to nucleoporin 214kDa; hypothetical protein 746840..747478 Acidimicrobium ferrooxidans DSM 10331 8322797 YP_003109361.1 CDS Afer_0738 NC_013124.1 747517 748557 D PFAM: Nucleotidyl transferase; KEGG: rxy:Rxyl_1624 nucleotidyl transferase; Nucleotidyl transferase 747517..748557 Acidimicrobium ferrooxidans DSM 10331 8322798 YP_003109362.1 CDS Afer_0739 NC_013124.1 748554 749534 D PFAM: NAD-dependent epimerase/dehydratase; 3-beta hydroxysteroid dehydrogenase/isomerase; Male sterility domain; polysaccharide biosynthesis protein CapD; short- chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; KEGG: sth:STH2715 UDP-glucose 4-epimerase; NAD-dependent epimerase/dehydratase 748554..749534 Acidimicrobium ferrooxidans DSM 10331 8322799 YP_003109363.1 CDS Afer_0740 NC_013124.1 749682 750380 R TIGRFAM: F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; KEGG: sco:SCO3037 F420-0--gamma-glutamyl ligase; F420-dependent oxidoreductase complement(749682..750380) Acidimicrobium ferrooxidans DSM 10331 8322800 YP_003109364.1 CDS Afer_0741 NC_013124.1 750377 751342 R catalyzes the formation of the L-lactyl phosphodiester of 7,8-didemethyl-8-hydroxy-5-deazariboflavin (F420-0) and GMP from actyl (2) diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin (FO); 2-phospho-L-lactate transferase complement(750377..751342) Acidimicrobium ferrooxidans DSM 10331 8322801 YP_003109365.1 CDS Afer_0742 NC_013124.1 751402 752505 D PFAM: glycosyl transferase group 1; KEGG: fre:Franean1_5894 glycosyl transferase group 1; group 1 glycosyl transferase 751402..752505 Acidimicrobium ferrooxidans DSM 10331 8322802 YP_003109366.1 CDS Afer_0743 NC_013124.1 752502 753566 D PFAM: glycosyl transferase group 1; KEGG: ace:Acel_0448 glycosyl transferase, group 1; group 1 glycosyl transferase 752502..753566 Acidimicrobium ferrooxidans DSM 10331 8322803 YP_003109367.1 CDS Afer_0744 NC_013124.1 753559 754650 D PFAM: glycosyl transferase group 1; KEGG: fra:Francci3_0735 glycosyl transferase, group 1; group 1 glycosyl transferase 753559..754650 Acidimicrobium ferrooxidans DSM 10331 8322804 YP_003109368.1 CDS Afer_0745 NC_013124.1 754662 755588 D PFAM: NAD-dependent epimerase/dehydratase; dTDP-4- dehydrorhamnose reductase; KEGG: afe:Lferr_2889 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 754662..755588 Acidimicrobium ferrooxidans DSM 10331 8322805 YP_003109369.1 CDS Afer_0746 NC_013124.1 755601 758456 D PFAM: glycosyl transferase family 2; KEGG: ace:Acel_0460 glycosyl transferase family protein; family 2 glycosyl transferase 755601..758456 Acidimicrobium ferrooxidans DSM 10331 8322806 YP_003109370.1 CDS Afer_0747 NC_013124.1 758453 759871 D KEGG: aau:AAur_1312 hypothetical protein; hypothetical protein 758453..759871 Acidimicrobium ferrooxidans DSM 10331 8322807 YP_003109371.1 CDS Afer_0748 NC_013124.1 759868 760368 R KEGG: LOC100072155; hypothetical protein LOC100072155; hypothetical protein complement(759868..760368) Acidimicrobium ferrooxidans DSM 10331 8322808 YP_003109372.1 CDS Afer_0749 NC_013124.1 760365 761030 R PFAM: bifunctional deaminase-reductase domain protein; KEGG: ace:Acel_1375 deaminase-reductase domain- containing protein; bifunctional deaminase-reductase domain-containing protein complement(760365..761030) Acidimicrobium ferrooxidans DSM 10331 8322809 YP_003109373.1 CDS Afer_0752 NC_013124.1 763226 764257 D KEGG: sfu:Sfum_1834 hypothetical protein; hypothetical protein 763226..764257 Acidimicrobium ferrooxidans DSM 10331 8322812 YP_003109374.1 CDS Afer_0753 NC_013124.1 764333 766009 D PFAM: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; SMART: chemotaxis sensory transducer; histidine kinase HAMP region domain protein; KEGG: nca:Noca_2984 chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer 764333..766009 Acidimicrobium ferrooxidans DSM 10331 8322813 YP_003109375.1 CDS Afer_0754 NC_013124.1 765990 766589 R PFAM: DSBA oxidoreductase; KEGG: fal:FRAAL2315 hypothetical protein; DSBA oxidoreductase complement(765990..766589) Acidimicrobium ferrooxidans DSM 10331 8322814 YP_003109376.1 CDS Afer_0755 NC_013124.1 766645 767064 R PFAM: NUDIX hydrolase; KEGG: stp:Strop_1261 NUDIX hydrolase; NUDIX hydrolase complement(766645..767064) Acidimicrobium ferrooxidans DSM 10331 8322815 YP_003109377.1 CDS Afer_0756 NC_013124.1 767057 767629 R PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: fra:Francci3_3059 phosphoesterase, PA- phosphatase related; PA-phosphatase-like phosphoesterase complement(767057..767629) Acidimicrobium ferrooxidans DSM 10331 8322816 YP_003109378.1 CDS Afer_0757 NC_013124.1 767626 768405 R KEGG: sgr:SGR_5851 hypothetical protein; hypothetical protein complement(767626..768405) Acidimicrobium ferrooxidans DSM 10331 8322817 YP_003109379.1 CDS Afer_0758 NC_013124.1 768415 769314 R PFAM: alpha/beta hydrolase fold; KEGG: predicted protein; alpha/beta hydrolase fold protein complement(768415..769314) Acidimicrobium ferrooxidans DSM 10331 8322818 YP_003109380.1 CDS Afer_0759 NC_013124.1 769322 769930 D PFAM: SNARE associated Golgi protein; KEGG: ank:AnaeK_1303 SNARE associated Golgi protein; hypothetical protein 769322..769930 Acidimicrobium ferrooxidans DSM 10331 8322819 YP_003109381.1 CDS Afer_0760 NC_013124.1 770477 770869 D PFAM: protein of unknown function DUF156; KEGG: ace:Acel_0543 hypothetical protein; hypothetical protein 770477..770869 Acidimicrobium ferrooxidans DSM 10331 8322822 YP_003109382.1 CDS Afer_0761 NC_013124.1 770911 772419 D TIGRFAM: trigger factor; PFAM: trigger factor domain; trigger factor domain protein; KEGG: bcl:ABC2637 trigger factor; trigger factor 770911..772419 Acidimicrobium ferrooxidans DSM 10331 8322823 YP_003109383.1 CDS Afer_0762 NC_013124.1 772430 773044 D PFAM: peptidase S14 ClpP; KEGG: chy:CHY_0325 ATP-dependent Clp protease, proteolytic subunit ClpP; Endopeptidase Clp 772430..773044 Acidimicrobium ferrooxidans DSM 10331 8322824 YP_003109384.1 CDS Afer_0763 NC_013124.1 773122 774381 D KEGG: fre:Franean1_5272 ATP-dependent protease ATP- binding subunit; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; AAA ATPase central domain protein; SMART: AAA ATPase; ATP-dependent Clp protease, ATP-binding subunit ClpX 773122..774381 Acidimicrobium ferrooxidans DSM 10331 8322825 YP_003109385.1 CDS Afer_0764 NC_013124.1 774378 775679 D TIGRFAM: FolC bifunctional protein; PFAM: Mur ligase middle domain protein; KEGG: dra:DR_2575 folyl-polyglutamate synthetase; FolC bifunctional protein 774378..775679 Acidimicrobium ferrooxidans DSM 10331 8322826 YP_003109386.1 CDS Afer_0765 NC_013124.1 775694 776104 D KEGG: ace:Acel_0747 nucleoside diphosphate kinase; PFAM: nucleoside diphosphate kinase; SMART: nucleoside diphosphate kinase; Nucleoside-diphosphate kinase 775694..776104 Acidimicrobium ferrooxidans DSM 10331 8322827 YP_003109387.1 CDS Afer_0766 NC_013124.1 776161 777189 D functions in MreBCD complex in some organisms; rod shape-determining protein MreB 776161..777189 Acidimicrobium ferrooxidans DSM 10331 8322828 YP_003109388.1 CDS Afer_0767 NC_013124.1 777198 778040 D TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: drm:Dred_2547 rod shape-determining protein MreC; rod shape-determining protein MreC 777198..778040 Acidimicrobium ferrooxidans DSM 10331 8322829 YP_003109389.1 CDS Afer_0768 NC_013124.1 778037 778540 D TIGRFAM: rod shape-determining protein MreD; KEGG: aoe:Clos_1763 hypothetical protein; rod shape-determining protein MreD 778037..778540 Acidimicrobium ferrooxidans DSM 10331 8322830 YP_003109390.1 CDS Afer_0769 NC_013124.1 778627 780561 D KEGG: fre:Franean1_5266 peptidoglycan glycosyltransferase; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerization domain; penicillin-binding protein 2 778627..780561 Acidimicrobium ferrooxidans DSM 10331 8322831 YP_003109391.1 CDS Afer_0770 NC_013124.1 781317 782690 D TIGRFAM: ribonuclease, Rne/Rng family; KEGG: tfu:Tfu_2183 ribonuclease E and G; Rne/Rng family ribonuclease 781317..782690 Acidimicrobium ferrooxidans DSM 10331 8322832 YP_003109392.1 CDS Afer_0771 NC_013124.1 782704 783039 D TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: pac:PPA0827 50S ribosomal protein L21; 50S ribosomal protein L21 782704..783039 Acidimicrobium ferrooxidans DSM 10331 8322833 YP_003109393.1 CDS Afer_0772 NC_013124.1 783042 783308 D TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: krh:KRH_11310 50S ribosomal protein L27; 50S ribosomal protein L27 783042..783308 Acidimicrobium ferrooxidans DSM 10331 8322834 YP_003109394.1 CDS Afer_0773 NC_013124.1 783322 784590 D TIGRFAM: GTP-binding protein Obg/CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP1/OBG domain protein; KEGG: ace:Acel_0758 GTPase ObgE; GTP-binding protein Obg/CgtA 783322..784590 Acidimicrobium ferrooxidans DSM 10331 8322835 YP_003109395.1 CDS Afer_0774 NC_013124.1 784587 785675 D KEGG: neu:NE1290 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; SMART: PUA domain containing protein; glutamate 5-kinase 784587..785675 Acidimicrobium ferrooxidans DSM 10331 8322836 YP_003109396.1 CDS Afer_0775 NC_013124.1 785807 786187 R KEGG: mse:Msed_0347 hypothetical protein; hypothetical protein complement(785807..786187) Acidimicrobium ferrooxidans DSM 10331 8322837 YP_003109397.1 CDS Afer_0776 NC_013124.1 786270 786791 R PFAM: protein of unknown function DUF664; KEGG: sco:SCO1340 hypothetical protein; hypothetical protein complement(786270..786791) Acidimicrobium ferrooxidans DSM 10331 8322838 YP_003109398.1 CDS Afer_0777 NC_013124.1 786934 787659 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acr:Acry_2201 ABC transporter related; ABC transporter-like protein complement(786934..787659) Acidimicrobium ferrooxidans DSM 10331 8322839 YP_003109399.1 CDS Afer_0778 NC_013124.1 787634 788350 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: acr:Acry_2202 ABC transporter related; ABC transporter-like protein complement(787634..788350) Acidimicrobium ferrooxidans DSM 10331 8322840 YP_003109400.1 CDS Afer_0779 NC_013124.1 788337 789347 R PFAM: inner-membrane translocator; KEGG: acr:Acry_2203 inner-membrane translocator; inner-membrane translocator complement(788337..789347) Acidimicrobium ferrooxidans DSM 10331 8322841 YP_003109401.1 CDS Afer_0780 NC_013124.1 789340 790218 R PFAM: inner-membrane translocator; KEGG: acr:Acry_2204 inner-membrane translocator; inner-membrane translocator complement(789340..790218) Acidimicrobium ferrooxidans DSM 10331 8322842 YP_003109402.1 CDS Afer_0781 NC_013124.1 790295 791584 R KEGG: acr:Acry_2205 extracellular ligand-binding receptor; extracellular ligand-binding receptor complement(790295..791584) Acidimicrobium ferrooxidans DSM 10331 8322843 YP_003109403.1 CDS Afer_0782 NC_013124.1 791924 793201 D TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase; KEGG: ace:Acel_0761 gamma-glutamyl phosphate reductase; gamma-glutamyl phosphate reductase 791924..793201 Acidimicrobium ferrooxidans DSM 10331 8322844 YP_003109404.1 CDS Afer_0783 NC_013124.1 793227 794078 D PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase; KEGG: sma:SAV_1448 MoxR-like ATPase; ATPase 793227..794078 Acidimicrobium ferrooxidans DSM 10331 8322845 YP_003109405.1 CDS Afer_0784 NC_013124.1 794075 795409 D PFAM: VWA containing CoxE family protein; KEGG: fre:Franean1_5254 VWA containing CoxE family protein; VWA containing CoxE family protein 794075..795409 Acidimicrobium ferrooxidans DSM 10331 8322846 YP_003109406.1 CDS Afer_0785 NC_013124.1 795514 797391 R KEGG: cbe:Cbei_2588 collagen triple helix repeat; hypothetical protein complement(795514..797391) Acidimicrobium ferrooxidans DSM 10331 8322847 YP_003109407.1 CDS Afer_0786 NC_013124.1 797518 798378 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: fal:FRAAL6170 2-hydroxyhepta-2,4-diene-1,7- dioate isomerase (HhdD isomerase)/5-carboxymethyl-2-oxo- hex-3-ene-1,7-dioate decarboxylase (OPET decarboxylase); 5-carboxymethyl-2-hydroxymuconate delta-isomerase complement(797518..798378) Acidimicrobium ferrooxidans DSM 10331 8322848 YP_003109408.1 CDS Afer_0787 NC_013124.1 798417 798770 R hypothetical protein complement(798417..798770) Acidimicrobium ferrooxidans DSM 10331 8322849 YP_003109409.1 CDS Afer_0788 NC_013124.1 798910 799479 D TIGRFAM: yecA family protein; KEGG: cli:Clim_0950 YecA family protein; yecA family protein 798910..799479 Acidimicrobium ferrooxidans DSM 10331 8322850 YP_003109410.1 CDS Afer_0789 NC_013124.1 799476 799994 R PFAM: Iojap-related protein; KEGG: ank:AnaeK_0226 iojap-like protein; Iojap-like protein complement(799476..799994) Acidimicrobium ferrooxidans DSM 10331 8322851 YP_003109411.1 CDS Afer_0790 NC_013124.1 800216 800836 R KEGG: dsy:DSY3161 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; nicotinate (nicotinamide) nucleotide adenylyltransferase complement(800216..800836) Acidimicrobium ferrooxidans DSM 10331 8322852 YP_003109412.1 CDS Afer_0791 NC_013124.1 800836 801759 R PFAM: Luciferase-like monooxygenase; KEGG: fal:FRAAL2800 hypothetical protein; Luciferase-like monooxygenase complement(800836..801759) Acidimicrobium ferrooxidans DSM 10331 8322853 YP_003109413.1 CDS Afer_0792 NC_013124.1 801844 803199 D KEGG: ace:Acel_0984 3-deoxy-D-arabinoheptulosonate- 7-phosphate synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase class II; phospho-2-dehydro-3-deoxyheptonate aldolase 801844..803199 Acidimicrobium ferrooxidans DSM 10331 8322854 YP_003109414.1 CDS Afer_0793 NC_013124.1 803273 804466 R PFAM: major facilitator superfamily MFS_1; KEGG: pto:PTO1278 transporter; major facilitator superfamily protein complement(803273..804466) Acidimicrobium ferrooxidans DSM 10331 8322855 YP_003109415.1 CDS Afer_0794 NC_013124.1 804528 804899 R KEGG: mmi:MMAR_0699 hypothetical protein; hypothetical protein complement(804528..804899) Acidimicrobium ferrooxidans DSM 10331 8322856 YP_003109416.1 CDS Afer_0795 NC_013124.1 805156 805932 R hypothetical protein complement(805156..805932) Acidimicrobium ferrooxidans DSM 10331 8322857 YP_003109417.1 CDS Afer_0796 NC_013124.1 806430 807950 D KEGG: eba:ebA5742 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase; histidine ammonia-lyase 806430..807950 Acidimicrobium ferrooxidans DSM 10331 8322859 YP_003109418.1 CDS Afer_0797 NC_013124.1 807962 808711 R PFAM: acyl-ACP thioesterase; KEGG: nfa:nfa20140 hypothetical protein; acyl-ACP thioesterase complement(807962..808711) Acidimicrobium ferrooxidans DSM 10331 8322860 YP_003109419.1 CDS Afer_0798 NC_013124.1 808721 810379 R PFAM: AMP-dependent synthetase and ligase; KEGG: scl:sce5736 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(808721..810379) Acidimicrobium ferrooxidans DSM 10331 8322861 YP_003109420.1 CDS Afer_0799 NC_013124.1 810437 811624 R PFAM: cobalamin (vitamin B12) biosynthesis CbiX protein; KEGG: sco:SCO1858 hypothetical protein; cobalamin (vitamin B12) biosynthesis CbiX protein complement(810437..811624) Acidimicrobium ferrooxidans DSM 10331 8322862 YP_003109421.1 CDS Afer_0800 NC_013124.1 811621 812205 R PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: rxy:Rxyl_0645 precorrin-8X methylmutase; Precorrin-8X methylmutase CbiC/CobH complement(811621..812205) Acidimicrobium ferrooxidans DSM 10331 8322863 YP_003109422.1 CDS Afer_0802 NC_013124.1 812384 814027 R TIGRFAM: precorrin-3B C17-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: stp:Strop_2520 precorrin-3B C17- methyltransferase; precorrin-3B C17-methyltransferase complement(812384..814027) Acidimicrobium ferrooxidans DSM 10331 8322865 YP_003109423.1 CDS Afer_0803 NC_013124.1 814215 815426 D PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: fre:Franean1_3789 fumarylacetoacetase; Fumarylacetoacetase 814215..815426 Acidimicrobium ferrooxidans DSM 10331 8322866 YP_003109424.1 CDS Afer_0804 NC_013124.1 815481 816002 D KEGG: tth:TT_P0002 cob(I)alamin adenosyltransferase; TIGRFAM: cob(I)alamin adenosyltransferase; PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; cob(I)alamin adenosyltransferase 815481..816002 Acidimicrobium ferrooxidans DSM 10331 8322867 YP_003109425.1 CDS Afer_0805 NC_013124.1 815999 817324 D PFAM: Cobyrinic acid ac-diamide synthase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: rxy:Rxyl_0638 cobyrinic acid a,c-diamide synthase; Cobyrinic acid ac-diamide synthase 815999..817324 Acidimicrobium ferrooxidans DSM 10331 8322868 YP_003109426.1 CDS Afer_0806 NC_013124.1 817335 818156 D PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: rxy:Rxyl_0640 precorrin-4 C11- methyltransferase; Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase 817335..818156 Acidimicrobium ferrooxidans DSM 10331 8322869 YP_003109427.1 CDS Afer_0807 NC_013124.1 818164 819225 D TIGRFAM: cobalamin biosynthesis protein CbiD; PFAM: cobalamin (vitamin B12) biosynthesis CbiD protein; KEGG: rxy:Rxyl_0641 cobalt-precorrin-6A synthase; cobalamin biosynthesis protein CbiD 818164..819225 Acidimicrobium ferrooxidans DSM 10331 8322870 YP_003109428.1 CDS Afer_0808 NC_013124.1 819222 820394 D TIGRFAM: precorrin-6y C5,15-methyltransferase (decarboxylating), CbiE subunit; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; protein-L- isoaspartate(D-aspartate) O-methyltransferase; KEGG: syx:SynWH7803_1707 precorrin-6Y methylase; precorrin-6y C5,15-methyltransferase subunit CbiE 819222..820394 Acidimicrobium ferrooxidans DSM 10331 8322871 YP_003109429.1 CDS Afer_0809 NC_013124.1 820955 821617 D KEGG: rha:RHA1_ro01772 hypothetical protein; hypothetical protein 820955..821617 Acidimicrobium ferrooxidans DSM 10331 8322872 YP_003109430.1 CDS Afer_0811 NC_013124.1 822464 824440 D PFAM: peptidase M13; peptidase M13 neprilysin; KEGG: lxx:Lxx01010 metallopeptidase; Endothelin-converting enzyme 1 822464..824440 Acidimicrobium ferrooxidans DSM 10331 8322874 YP_003109431.1 CDS Afer_0812 NC_013124.1 824531 825712 D PFAM: homogentisate 12-dioxygenase; KEGG: stp:Strop_4258 homogentisate 1,2-dioxygenase; homogentisate 12-dioxygenase 824531..825712 Acidimicrobium ferrooxidans DSM 10331 8322875 YP_003109432.1 CDS Afer_0813 NC_013124.1 825709 826677 D PFAM: beta-lactamase domain protein; KEGG: sen:SACE_4081 beta lactamase; beta-lactamase domain-containing protein 825709..826677 Acidimicrobium ferrooxidans DSM 10331 8322876 YP_003109433.1 CDS Afer_0814 NC_013124.1 826674 828251 D PFAM: monooxygenase FAD-binding; FAD dependent oxidoreductase; KEGG: sen:SACE_3057 pentachlorophenol monooxygenase; FAD-binding monooxygenase 826674..828251 Acidimicrobium ferrooxidans DSM 10331 8322877 YP_003109434.1 CDS Afer_0815 NC_013124.1 828263 829714 D TIGRFAM: cobyric acid synthase CobQ; PFAM: CobB/CobQ domain protein glutamine amidotransferase; Cobyrinic acid ac-diamide synthase; KEGG: rha:RHA1_ro06605 cobyric acid synthase; cobyric acid synthase CobQ 828263..829714 Acidimicrobium ferrooxidans DSM 10331 8322878 YP_003109435.1 CDS Afer_0816 NC_013124.1 829765 833292 D KEGG: rxy:Rxyl_0635 cobaltochelatase; TIGRFAM: cobaltochelatase, CobN subunit; PFAM: CobN/magnesium chelatase; cobaltochelatase, CobN subunit 829765..833292 Acidimicrobium ferrooxidans DSM 10331 8322879 YP_003109436.1 CDS Afer_0817 NC_013124.1 833289 835112 D KEGG: nfa:nfa40830 magnesium chelatase subunit; PFAM: ATPase associated with various cellular activities AAA_5; AAA ATPase central domain protein; von Willebrand factor A; magnesium chelatase ChlI subunit; SMART: von Willebrand factor A; AAA ATPase; Magnesium chelatase 833289..835112 Acidimicrobium ferrooxidans DSM 10331 8322880 YP_003109437.1 CDS Afer_0818 NC_013124.1 835088 835735 R PFAM: Uracil-DNA glycosylase superfamily; KEGG: ank:AnaeK_3689 uracil-DNA glycosylase superfamily protein; Uracil-DNA glycosylase superfamily protein complement(835088..835735) Acidimicrobium ferrooxidans DSM 10331 8322881 YP_003109438.1 CDS Afer_0819 NC_013124.1 835827 836162 D KEGG: cno:NT01CX_1670 hypothetical protein; hypothetical protein 835827..836162 Acidimicrobium ferrooxidans DSM 10331 8322882 YP_003109439.1 CDS Afer_0820 NC_013124.1 836177 839371 R KEGG: met:M446_2712 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase complement(836177..839371) Acidimicrobium ferrooxidans DSM 10331 8322883 YP_003109440.1 CDS Afer_0821 NC_013124.1 839502 842459 D TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; ferredoxin; molybdopterin oxidoreductase Fe4S4 region; molydopterin dinucleotide-binding region; KEGG: dge:Dgeo_2746 formate dehydrogenase, alpha subunit; formate dehydrogenase subunit alpha 839502..842459 Acidimicrobium ferrooxidans DSM 10331 8322884 YP_003109441.1 CDS Afer_0822 NC_013124.1 842452 842844 D KEGG: sgr:SGR_1901 chromosome segregation protein; chromosome segregation protein 842452..842844 Acidimicrobium ferrooxidans DSM 10331 8322885 YP_003109442.1 CDS Afer_0823 NC_013124.1 843062 844138 D KEGG: hsl:OE4113F branched-chain amino acid dehydrogenase E1 component alpha subunit; TIGRFAM: pyruvate dehydrogenase (acetyl- transferring) E1 component, alpha subunit; PFAM: dehydrogenase E1 component; pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha 843062..844138 Acidimicrobium ferrooxidans DSM 10331 8322886 YP_003109443.1 CDS Afer_0824 NC_013124.1 844138 845118 D PFAM: Transketolase central region; Transketolase domain protein; KEGG: gka:GK3216 pyruvate dehydrogenase E1 (lipoamide) beta subunit; transketolase 844138..845118 Acidimicrobium ferrooxidans DSM 10331 8322887 YP_003109444.1 CDS Afer_0825 NC_013124.1 845184 846467 D PFAM: catalytic domain of components of various dehydrogenase complexes; biotin/lipoyl attachment domain- containing protein; E3 binding domain protein; KEGG: sth:STH413 pyruvate dehydrogenase E2; hypothetical protein 845184..846467 Acidimicrobium ferrooxidans DSM 10331 8322888 YP_003109445.1 CDS Afer_0826 NC_013124.1 846467 847897 D TIGRFAM: dihydrolipoamide dehydrogenase; PFAM: pyridine nucleotide-disulphide oxidoreductase dimerization region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; FAD dependent oxidoreductase; KEGG: gka:GK1061 dihydrolipoamide dehydrogenase; dihydrolipoamide dehydrogenase 846467..847897 Acidimicrobium ferrooxidans DSM 10331 8322889 YP_003109446.1 CDS Afer_0827 NC_013124.1 847928 849166 R KEGG: fal:FRAAL3473 acetyl-CoA hydrolase; acetyl-CoA hydrolase complement(847928..849166) Acidimicrobium ferrooxidans DSM 10331 8322890 YP_003109447.1 CDS Afer_0828 NC_013124.1 849190 850209 R PFAM: conserved hypothetical protein; KEGG: rxy:Rxyl_2377 conserved hypothetical protein 374; hypothetical protein complement(849190..850209) Acidimicrobium ferrooxidans DSM 10331 8322891 YP_003109448.1 CDS Afer_0829 NC_013124.1 850508 851776 D PFAM: protein of unknown function UPF0118; KEGG: kra:Krad_0518 hypothetical protein; hypothetical protein 850508..851776 Acidimicrobium ferrooxidans DSM 10331 8322892 YP_003109449.1 CDS Afer_0830 NC_013124.1 852279 854060 R PFAM: glycosyl transferase group 1; KEGG: nca:Noca_1551 hypothetical protein; group 1 glycosyl transferase complement(852279..854060) Acidimicrobium ferrooxidans DSM 10331 8322893 YP_003109450.1 CDS Afer_0831 NC_013124.1 854100 854945 D KEGG: cjk:jk1999 hypothetical protein; hypothetical protein 854100..854945 Acidimicrobium ferrooxidans DSM 10331 8322894 YP_003109451.1 CDS Afer_0832 NC_013124.1 854942 855619 D PFAM: alpha/beta hydrolase fold; KEGG: mjl:Mjls_4806 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein 854942..855619 Acidimicrobium ferrooxidans DSM 10331 8322895 YP_003109452.1 CDS Afer_0833 NC_013124.1 855765 856058 D PFAM: transcription factor WhiB; KEGG: ace:Acel_0560 transcription factor WhiB; transcription factor WhiB 855765..856058 Acidimicrobium ferrooxidans DSM 10331 8322896 YP_003109453.1 CDS Afer_0834 NC_013124.1 856305 857114 R PFAM: formate dehydrogenase subunit FdhD; KEGG: ttj:TTHB196 protein required for formate dehydrogenase activity; formate dehydrogenase subunit FdhD complement(856305..857114) Acidimicrobium ferrooxidans DSM 10331 8322897 YP_003109454.1 CDS Afer_0835 NC_013124.1 857193 857801 D KEGG: saq:Sare_3891 hypothetical protein; hypothetical protein 857193..857801 Acidimicrobium ferrooxidans DSM 10331 8322898 YP_003109455.1 CDS Afer_0836 NC_013124.1 857812 858513 R PFAM: protein of unknown function DUF125 transmembrane; KEGG: afw:Anae109_0752 hypothetical protein; hypothetical protein complement(857812..858513) Acidimicrobium ferrooxidans DSM 10331 8322899 YP_003109456.1 CDS Afer_0837 NC_013124.1 858579 858950 D hypothetical protein 858579..858950 Acidimicrobium ferrooxidans DSM 10331 8322900 YP_003109457.1 CDS Afer_0838 NC_013124.1 859218 860342 R PFAM: MscS Mechanosensitive ion channel; KEGG: bcm:Bcenmc03_1911 MscS mechanosensitive ion channel; mechanosensitive ion channel MscS complement(859218..860342) Acidimicrobium ferrooxidans DSM 10331 8322901 YP_003109458.1 CDS Afer_0839 NC_013124.1 860438 860899 D PFAM: MaoC domain protein dehydratase; KEGG: sma:SAV_6603 hypothetical protein; MaoC domain-containing protein dehydratase 860438..860899 Acidimicrobium ferrooxidans DSM 10331 8322902 YP_003109459.1 CDS Afer_0840 NC_013124.1 860933 861787 D PFAM: protein of unknown function DUF344; KEGG: mpt:Mpe_A3289 polyphosphate:AMP phosphotransferase; polyphosphate:AMP phosphotransferase 860933..861787 Acidimicrobium ferrooxidans DSM 10331 8322903 YP_003109460.1 CDS Afer_0841 NC_013124.1 861784 861984 D hypothetical protein 861784..861984 Acidimicrobium ferrooxidans DSM 10331 8322904 YP_003109461.1 CDS Afer_0842 NC_013124.1 862040 862747 D TIGRFAM: ubiquinone/menaquinone biosynthesis methyltransferase; PFAM: Methyltransferase type 11; Methionine biosynthesis MetW protein; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: sru:SRU_0824 ubiquinone/menaquinone biosynthesis methyltransferase UbiE; ubiquinone/menaquinone biosynthesis methyltransferase 862040..862747 Acidimicrobium ferrooxidans DSM 10331 8322905 YP_003109462.1 CDS Afer_0843 NC_013124.1 862744 863898 D PFAM: Chorismate binding-like; KEGG: bcj:BCAM2235 pyochelin biosynthetic protein PchA; Chorismate binding-like protein 862744..863898 Acidimicrobium ferrooxidans DSM 10331 8322906 YP_003109463.1 CDS Afer_0844 NC_013124.1 863891 866728 D KEGG: mbb:BCG_1676 excinuclease ABC subunit A; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase; excinuclease ABC subunit A 863891..866728 Acidimicrobium ferrooxidans DSM 10331 8322907 YP_003109464.1 CDS Afer_0845 NC_013124.1 866725 868587 D KEGG: mbb:BCG_1481 excinuclease ABC subunit C; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein; excinuclease ABC subunit C 866725..868587 Acidimicrobium ferrooxidans DSM 10331 8322908 YP_003109465.1 CDS Afer_0846 NC_013124.1 868584 869339 D PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: bbt:BBta_2180 methyltransferase; type 11 methyltransferase 868584..869339 Acidimicrobium ferrooxidans DSM 10331 8322909 YP_003109466.1 CDS Afer_0847 NC_013124.1 869336 870193 D PFAM: conserved hypothetical protein; KEGG: ace:Acel_1111 hypothetical protein; hypothetical protein 869336..870193 Acidimicrobium ferrooxidans DSM 10331 8322910 YP_003109467.1 CDS Afer_0848 NC_013124.1 870190 871086 D PFAM: protein of unknown function UPF0052 and CofD; KEGG: fal:FRAAL4591 hypothetical protein; hypothetical protein 870190..871086 Acidimicrobium ferrooxidans DSM 10331 8322911 YP_003109468.1 CDS Afer_0849 NC_013124.1 871180 872205 D KEGG: kra:Krad_2931 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase; glyceraldehyde-3-phosphate dehydrogenase, type I 871180..872205 Acidimicrobium ferrooxidans DSM 10331 8322912 YP_003109469.1 CDS Afer_0850 NC_013124.1 872205 873341 D PFAM: phosphoglycerate kinase; KEGG: rxy:Rxyl_2004 phosphoglycerate kinase; phosphoglycerate kinase 872205..873341 Acidimicrobium ferrooxidans DSM 10331 8322913 YP_003109470.1 CDS Afer_0851 NC_013124.1 873338 874165 D KEGG: ace:Acel_1115 phosphoglycerate kinase., triose-phosphate isomerase; TIGRFAM: triosephosphate isomerase; PFAM: triosephosphate isomerase; triosephosphate isomerase 873338..874165 Acidimicrobium ferrooxidans DSM 10331 8322914 YP_003109471.1 CDS Afer_0852 NC_013124.1 874195 874422 D TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: cmi:CMM_1741 preprotein translocase subunit SecG; preprotein translocase subunit SecG 874195..874422 Acidimicrobium ferrooxidans DSM 10331 8322915 YP_003109472.1 CDS Afer_0853 NC_013124.1 874801 875496 D KEGG: kra:Krad_1568 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: PAS sensor protein; PFAM: PAS fold-4 domain protein; SMART: PAS domain containing protein; PAS sensor protein 874801..875496 Acidimicrobium ferrooxidans DSM 10331 8322916 YP_003109473.1 CDS Afer_0854 NC_013124.1 875503 876174 D PFAM: Metal-dependent hydrolase HDOD; KEGG: kra:Krad_1569 signal transduction protein; signal transduction protein 875503..876174 Acidimicrobium ferrooxidans DSM 10331 8322917 YP_003109474.1 CDS Afer_0855 NC_013124.1 876211 877836 R PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: afe:Lferr_1745 hypothetical protein; ErfK/YbiS/YcfS/YnhG family protein complement(876211..877836) Acidimicrobium ferrooxidans DSM 10331 8322918 YP_003109475.1 CDS Afer_0856 NC_013124.1 877952 878551 D PFAM: multiple antibiotic resistance (MarC)-related protein; KEGG: ace:Acel_1795 multiple antibiotic resistance (MarC)-related proteins; multiple antibiotic resistance (MarC)-like protein 877952..878551 Acidimicrobium ferrooxidans DSM 10331 8322919 YP_003109476.1 CDS Afer_0858 NC_013124.1 879458 880375 R TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: gsu:GSU0487 cation efflux family protein; cation diffusion facilitator family transporter complement(879458..880375) Acidimicrobium ferrooxidans DSM 10331 8322921 YP_003109477.1 CDS Afer_0859 NC_013124.1 880595 881257 D PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: xau:Xaut_2363 peroxidase; Peroxidase 880595..881257 Acidimicrobium ferrooxidans DSM 10331 8322922 YP_003109478.1 CDS Afer_0860 NC_013124.1 881462 882490 D PFAM: Luciferase-like monooxygenase; KEGG: sco:SCO6786 oxidoreductase; Luciferase-like monooxygenase 881462..882490 Acidimicrobium ferrooxidans DSM 10331 8322923 YP_003109479.1 CDS Afer_0861 NC_013124.1 882508 883581 D PFAM: glycosyl transferase family 2; KEGG: fal:FRAAL2169 glycosyl transferase; family 2 glycosyl transferase 882508..883581 Acidimicrobium ferrooxidans DSM 10331 8322924 YP_003109480.1 CDS Afer_0862 NC_013124.1 883551 884030 D KEGG: mar:MAE_29540 hypothetical protein; hypothetical protein 883551..884030 Acidimicrobium ferrooxidans DSM 10331 8322925 YP_003109481.1 CDS Afer_0863 NC_013124.1 884753 885319 R PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease; KEGG: cjk:jk0518 oligoribonuclease; Exonuclease RNase T and DNA polymerase III complement(884753..885319) Acidimicrobium ferrooxidans DSM 10331 8322926 YP_003109482.1 CDS Afer_0864 NC_013124.1 885376 886191 D PFAM: glycosyl transferase family 2; KEGG: sen:SACE_2289 dolichyl-phosphate beta-D- mannosyltransferase; Dolichyl-phosphate beta-D-mannosyltransferase 885376..886191 Acidimicrobium ferrooxidans DSM 10331 8322927 YP_003109483.1 CDS Afer_0865 NC_013124.1 886173 886613 D KEGG: ckl:CKL_1144 hypothetical protein; TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; PFAM: deoxyUTP pyrophosphatase; deoxyuridine 5'-triphosphate nucleotidohydrolase Dut 886173..886613 Acidimicrobium ferrooxidans DSM 10331 8322928 YP_003109484.1 CDS Afer_0866 NC_013124.1 886963 887133 D hypothetical protein 886963..887133 Acidimicrobium ferrooxidans DSM 10331 8322930 YP_003109485.1 CDS Afer_0867 NC_013124.1 887140 888603 D PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: bph:Bphy_6281 permease for cytosine/purines uracil thiamine allantoin; cytosine/purines uracil thiamine allantoin permease 887140..888603 Acidimicrobium ferrooxidans DSM 10331 8322931 YP_003109486.1 CDS Afer_0868 NC_013124.1 888735 889127 D PFAM: DoxX family protein; KEGG: dge:Dgeo_2087 DoxX; DoxX family protein 888735..889127 Acidimicrobium ferrooxidans DSM 10331 8322932 YP_003109487.1 CDS Afer_0869 NC_013124.1 889332 889511 D hypothetical protein 889332..889511 Acidimicrobium ferrooxidans DSM 10331 8322933 YP_003109488.1 CDS Afer_0870 NC_013124.1 889525 890511 D PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; SMART: serine/threonine protein kinase; tyrosine protein kinase; KEGG: mbn:Mboo_0434 protein kinase; serine/threonine protein kinase 889525..890511 Acidimicrobium ferrooxidans DSM 10331 8322934 YP_003109489.1 CDS Afer_0871 NC_013124.1 890539 891753 D PFAM: glutamine synthetase catalytic region; KEGG: blj:BLD_0159 glutamine synthetase; glutamine synthetase catalytic subunit 890539..891753 Acidimicrobium ferrooxidans DSM 10331 8322935 YP_003109490.1 CDS Afer_0872 NC_013124.1 891937 893514 D PFAM: amino acid permease-associated region; KEGG: mbn:Mboo_0439 amino acid permease-associated region; amino acid permease-associated protein 891937..893514 Acidimicrobium ferrooxidans DSM 10331 8322936 YP_003109491.1 CDS Afer_0873 NC_013124.1 893598 894446 D PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein; KEGG: dra:DR_2513 hypothetical protein; protein serine/threonine phosphatase 893598..894446 Acidimicrobium ferrooxidans DSM 10331 8322937 YP_003109492.1 CDS Afer_0874 NC_013124.1 894443 896053 R PFAM: PEP-utilizing protein; PEP-utilising protein mobile region; PEP-utilising protein domain protein; KEGG: cmi:CMM_0968 phosphoenolpyruvate--protein phosphatase; PEP-utilizing protein complement(894443..896053) Acidimicrobium ferrooxidans DSM 10331 8322938 YP_003109493.1 CDS Afer_0875 NC_013124.1 896232 897119 D TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: sco:SCO4057 transport integral membrane protein; MIP family channel protein 896232..897119 Acidimicrobium ferrooxidans DSM 10331 8322939 YP_003109494.1 CDS Afer_0876 NC_013124.1 897116 898609 D TIGRFAM: glycerol kinase; PFAM: carbohydrate kinase FGGY; KEGG: chy:CHY_1839 glycerol kinase; glycerol kinase 897116..898609 Acidimicrobium ferrooxidans DSM 10331 8322940 YP_003109495.1 CDS Afer_0877 NC_013124.1 898632 899633 D KEGG: hmo:HM1_0840 dihydroxyacetone kinase, dhak subunit; TIGRFAM: dihydroxyacetone kinase, DhaK subunit; PFAM: Dak kinase; dihydroxyacetone kinase, DhaK subunit 898632..899633 Acidimicrobium ferrooxidans DSM 10331 8322941 YP_003109496.1 CDS Afer_0878 NC_013124.1 899630 900259 D TIGRFAM: dihydroxyacetone kinase, L subunit; PFAM: Dak phosphatase; KEGG: lxx:Lxx09880 dihydroxyacetone kinase; dihydroxyacetone kinase, L subunit 899630..900259 Acidimicrobium ferrooxidans DSM 10331 8322942 YP_003109497.1 CDS Afer_0879 NC_013124.1 900270 900653 D PFAM: PTS system fructose subfamily IIA component; KEGG: rsa:RSal33209_3182 dihydroxyacetone kinase phosphotransfer protein; PTS system fructose subfamily IIA component 900270..900653 Acidimicrobium ferrooxidans DSM 10331 8322943 YP_003109498.1 CDS Afer_0880 NC_013124.1 900650 902110 D PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: rca:Rcas_4111 FAD dependent oxidoreductase; FAD dependent oxidoreductase 900650..902110 Acidimicrobium ferrooxidans DSM 10331 8322944 YP_003109499.1 CDS Afer_0881 NC_013124.1 902107 903138 D KEGG: rca:Rcas_4112 anaerobic glycerol-3-phosphate dehydrogenase subunit B; hypothetical protein 902107..903138 Acidimicrobium ferrooxidans DSM 10331 8322945 YP_003109500.1 CDS Afer_0882 NC_013124.1 903132 904292 D PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: yen:YE0214 sn-glycerol-3-phosphate dehydrogenase subunit C; hypothetical protein 903132..904292 Acidimicrobium ferrooxidans DSM 10331 8322946 YP_003109501.1 CDS Afer_0883 NC_013124.1 904289 904900 D PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: tte:TTE2004 glycerol-3-phosphate responsive antiterminator (mRNA-binding); glycerol-3-phosphate responsive antiterminator, GlpP 904289..904900 Acidimicrobium ferrooxidans DSM 10331 8322947 YP_003109502.1 CDS Afer_0884 NC_013124.1 904897 905217 D PFAM: phosphoryl transfer system HPr; KEGG: lsp:Bsph_2351 phosphocarrier protein HPr (histidine-containing protein); phosphotransferase system, phosphocarrier protein HPr 904897..905217 Acidimicrobium ferrooxidans DSM 10331 8322948 YP_003109503.1 CDS Afer_0885 NC_013124.1 905398 906279 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: saq:Sare_4780 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 905398..906279 Acidimicrobium ferrooxidans DSM 10331 8322949 YP_003109504.1 CDS Afer_0886 NC_013124.1 906312 908144 D PFAM: extracellular solute-binding protein family 5; KEGG: saq:Sare_4778 extracellular solute-binding protein; family 5 extracellular solute-binding protein 906312..908144 Acidimicrobium ferrooxidans DSM 10331 8322950 YP_003109505.1 CDS Afer_0887 NC_013124.1 908148 909089 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO6113 peptide ABC transporter integral membrane protein; binding-protein-dependent transport systems inner membrane component 908148..909089 Acidimicrobium ferrooxidans DSM 10331 8322951 YP_003109506.1 CDS Afer_0888 NC_013124.1 909086 909967 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: saq:Sare_4780 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 909086..909967 Acidimicrobium ferrooxidans DSM 10331 8322952 YP_003109507.1 CDS Afer_0889 NC_013124.1 909964 911427 D PFAM: FAD dependent oxidoreductase; KEGG: sgr:SGR_1833 FAD-dependent oxidoreductase; FAD dependent oxidoreductase 909964..911427 Acidimicrobium ferrooxidans DSM 10331 8322953 YP_003109508.1 CDS Afer_0890 NC_013124.1 911440 913512 D KEGG: stp:Strop_4339 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase subunit 911440..913512 Acidimicrobium ferrooxidans DSM 10331 8322954 YP_003109509.1 CDS Afer_0891 NC_013124.1 913434 914612 R PFAM: acyltransferase 3; KEGG: mxa:MXAN_1049 acyltransferase family protein; acyltransferase 3 complement(913434..914612) Acidimicrobium ferrooxidans DSM 10331 8322955 YP_003109510.1 CDS Afer_0892 NC_013124.1 914841 915791 R PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: mpa:MAP0820 hypothetical protein; tRNA/rRNA methyltransferase SpoU complement(914841..915791) Acidimicrobium ferrooxidans DSM 10331 8322956 YP_003109511.1 CDS Afer_0893 NC_013124.1 915788 916633 R PFAM: CHAD domain containing protein; KEGG: afw:Anae109_0571 CHAD domain-containing protein; CHAD domain-containing protein complement(915788..916633) Acidimicrobium ferrooxidans DSM 10331 8322957 YP_003109512.1 CDS Afer_0894 NC_013124.1 916676 917458 R TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: pfu:PF0432 sugar-catabolism phosphotransferase; HAD-superfamily hydrolase complement(916676..917458) Acidimicrobium ferrooxidans DSM 10331 8322958 YP_003109513.1 CDS Afer_0895 NC_013124.1 917563 918612 D catalyzes the formation of glycerone phosphate and D-glyceraldehyde 3-phosphate from D-fructose 1,6-bisphosphate; fructose-bisphosphate aldolase 917563..918612 Acidimicrobium ferrooxidans DSM 10331 8322959 YP_003109514.1 CDS Afer_0896 NC_013124.1 918632 919336 R PFAM: Tetratricopeptide TPR_2 repeat protein; Tetratricopeptide TPR_4; KEGG: stp:Strop_1906 tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat-containing protein complement(918632..919336) Acidimicrobium ferrooxidans DSM 10331 8322960 YP_003109515.1 CDS Afer_0897 NC_013124.1 919409 920080 D KEGG: predicted protein; hypothetical protein 919409..920080 Acidimicrobium ferrooxidans DSM 10331 8322961 YP_003109516.1 CDS Afer_0898 NC_013124.1 920111 920842 D KEGG: LOC100146717; hypothetical protein LOC100146717; hypothetical protein 920111..920842 Acidimicrobium ferrooxidans DSM 10331 8322962 YP_003109517.1 CDS Afer_0899 NC_013124.1 920802 921824 R PFAM: conserved hypothetical protein; KEGG: cya:CYA_0770 hypothetical protein; hypothetical protein complement(920802..921824) Acidimicrobium ferrooxidans DSM 10331 8322963 YP_003109518.1 CDS Afer_0900 NC_013124.1 921821 924094 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: rxy:Rxyl_0975 FO synthase; Radical SAM domain-containing protein complement(921821..924094) Acidimicrobium ferrooxidans DSM 10331 8322964 YP_003109519.1 CDS Afer_0901 NC_013124.1 924104 924826 R KEGG: ace:Acel_1122 6-phosphogluconolactonase; 6-phosphogluconolactonase/Glucosamine-6- phosphate isomerase/deaminase-like protein complement(924104..924826) Acidimicrobium ferrooxidans DSM 10331 8322965 YP_003109520.1 CDS Afer_0902 NC_013124.1 924936 925235 D hypothetical protein 924936..925235 Acidimicrobium ferrooxidans DSM 10331 8322966 YP_003109521.1 CDS Afer_0903 NC_013124.1 925249 925455 D hypothetical protein 925249..925455 Acidimicrobium ferrooxidans DSM 10331 8322967 YP_003109522.1 CDS Afer_0904 NC_013124.1 925455 925667 D hypothetical protein 925455..925667 Acidimicrobium ferrooxidans DSM 10331 8322968 YP_003109523.1 CDS Afer_0905 NC_013124.1 925664 926554 D PFAM: tRNA methyltransferase complex GCD14 subunit; protein-L-isoaspartate(D-aspartate) O-methyltransferase; SMART: ribosomal RNA adenine methylase transferase; KEGG: cmi:CMM_1691 methyltransferase; tRNA methyltransferase complex GCD14 subunit 925664..926554 Acidimicrobium ferrooxidans DSM 10331 8322969 YP_003109524.1 CDS Afer_0906 NC_013124.1 926802 927038 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: saq:Sare_2357 hypothetical protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(926802..927038) Acidimicrobium ferrooxidans DSM 10331 8322970 YP_003109525.1 CDS Afer_0907 NC_013124.1 927175 928914 D PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: tfu:Tfu_1809 vesicle-fusing ATPase; AAA ATPase central domain-containing protein 927175..928914 Acidimicrobium ferrooxidans DSM 10331 8322971 YP_003109526.1 CDS Afer_0908 NC_013124.1 928935 930428 D PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: fra:Francci3_2629 hypothetical protein; hypothetical protein 928935..930428 Acidimicrobium ferrooxidans DSM 10331 8322972 YP_003109527.1 CDS Afer_0909 NC_013124.1 930451 930645 D PFAM: protein of unknown function DUF797; KEGG: tfu:Tfu_1791 hypothetical protein; hypothetical protein 930451..930645 Acidimicrobium ferrooxidans DSM 10331 8322973 YP_003109528.1 CDS Afer_0910 NC_013124.1 930722 931543 D PFAM: 20S proteasome A and B subunits; KEGG: nca:Noca_2645 proteasome subunit beta; 20S proteasome subunits A and B 930722..931543 Acidimicrobium ferrooxidans DSM 10331 8322974 YP_003109529.1 CDS Afer_0911 NC_013124.1 931540 932238 D PFAM: 20S proteasome A and B subunits; KEGG: kra:Krad_1874 20S proteasome A and B subunits; 20S proteasome subunits A and B 931540..932238 Acidimicrobium ferrooxidans DSM 10331 8322975 YP_003109530.1 CDS Afer_0912 NC_013124.1 932239 933606 D PFAM: protein of unknown function DUF245 domain protein; protein of unknown function DUF275 domain protein; KEGG: ace:Acel_1191 hypothetical protein; hypothetical protein 932239..933606 Acidimicrobium ferrooxidans DSM 10331 8322976 YP_003109531.1 CDS Afer_0913 NC_013124.1 933606 934136 D TIGRFAM: signal peptidase I; PFAM: peptidase S24 and S26 domain protein; KEGG: pth:PTH_1717 signal peptidase I; signal peptidase I 933606..934136 Acidimicrobium ferrooxidans DSM 10331 8322977 YP_003109532.1 CDS Afer_0914 NC_013124.1 934150 934494 R KEGG: ace:Acel_1202 hypothetical protein; hypothetical protein complement(934150..934494) Acidimicrobium ferrooxidans DSM 10331 8322978 YP_003109533.1 CDS Afer_0915 NC_013124.1 934656 935627 D KEGG: mab:MAB_3683c tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; tryptophanyl-tRNA synthetase 934656..935627 Acidimicrobium ferrooxidans DSM 10331 8322979 YP_003109534.1 CDS Afer_0916 NC_013124.1 935648 936001 D KEGG: bid:Bind_2704 twin-arginine translocation protein, TatB subunit; twin-arginine translocation protein, TatB subunit 935648..936001 Acidimicrobium ferrooxidans DSM 10331 8322980 YP_003109535.1 CDS Afer_0917 NC_013124.1 936001 936777 D TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: fre:Franean1_4868 sec-independent protein translocase, TatC subunit; Sec-independent protein translocase, TatC subunit 936001..936777 Acidimicrobium ferrooxidans DSM 10331 8322981 YP_003109536.1 CDS Afer_0918 NC_013124.1 936851 939298 D PFAM: DEAD/DEAH box helicase domain protein; DSH domain protein; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein; KEGG: ace:Acel_1206 DSH domain-containing protein; DEAD/DEAH box helicase domain-containing protein 936851..939298 Acidimicrobium ferrooxidans DSM 10331 8322982 YP_003109537.1 CDS Afer_0919 NC_013124.1 939310 940908 D PFAM: thymidylate synthase complementing protein ThyX; KEGG: rrs:RoseRS_0926 thymidylate synthase complementing protein ThyX; thymidylate synthase complementing protein ThyX 939310..940908 Acidimicrobium ferrooxidans DSM 10331 8322983 YP_003109538.1 CDS Afer_0920 NC_013124.1 940905 941495 R KEGG: hypothetical protein LOC100012673; hypothetical protein complement(940905..941495) Acidimicrobium ferrooxidans DSM 10331 8322984 YP_003109539.1 CDS Afer_0921 NC_013124.1 941529 942128 D hypothetical protein 941529..942128 Acidimicrobium ferrooxidans DSM 10331 8322985 YP_003109540.1 CDS Afer_0922 NC_013124.1 942154 942564 R PFAM: NUDIX hydrolase; KEGG: smr:Smar_1194 NUDIX hydrolase; NUDIX hydrolase complement(942154..942564) Acidimicrobium ferrooxidans DSM 10331 8322986 YP_003109541.1 CDS Afer_0923 NC_013124.1 942575 942898 R PFAM: GCN5-related N-acetyltransferase; KEGG: bxe:Bxe_A4157 MarR family transcriptional regulator; GCN5-like N-acetyltransferase complement(942575..942898) Acidimicrobium ferrooxidans DSM 10331 8322987 YP_003109542.1 CDS Afer_0924 NC_013124.1 942906 944570 R KEGG: Hypothetical protein CBG02561; hypothetical protein complement(942906..944570) Acidimicrobium ferrooxidans DSM 10331 8322988 YP_003109543.1 CDS Afer_0927 NC_013124.1 946623 948158 D PFAM: Curculin domain protein (mannose-binding) lectin; SMART: Curculin domain protein (mannose-binding) lectin; KEGG: bam:Bamb_0766 curculin domain-containing protein; Curculin domain-containing protein (mannose-binding) lectin 946623..948158 Acidimicrobium ferrooxidans DSM 10331 8322991 YP_003109544.1 CDS Afer_0928 NC_013124.1 948187 948939 D hypothetical protein 948187..948939 Acidimicrobium ferrooxidans DSM 10331 8322992 YP_003109545.1 CDS Afer_0930 NC_013124.1 950500 950742 R PFAM: CopG domain protein DNA-binding domain protein; CopG domain-containing protein DNA-binding domain-containing protein complement(950500..950742) Acidimicrobium ferrooxidans DSM 10331 8322994 YP_003109546.1 CDS Afer_0931 NC_013124.1 950826 951344 D KEGG: bpl:BURPS1106A_2451 S-adenosylhomocysteine hydrolase; hypothetical protein 950826..951344 Acidimicrobium ferrooxidans DSM 10331 8322995 YP_003109547.1 CDS Afer_0934 NC_013124.1 952797 953024 D KEGG: nca:Noca_3127 hypothetical protein; hypothetical protein 952797..953024 Acidimicrobium ferrooxidans DSM 10331 8322998 YP_003109548.1 CDS Afer_0935 NC_013124.1 953021 953776 D PFAM: Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: afw:Anae109_1054 oxidoreductase FAD/NAD(P)- binding subunit; Oxidoreductase FAD-binding domain-containing protein 953021..953776 Acidimicrobium ferrooxidans DSM 10331 8322999 YP_003109549.1 CDS Afer_0937 NC_013124.1 954769 955878 D PFAM: glycosyl transferase group 1; KEGG: rxy:Rxyl_0383 glycosyl transferase, group 1; group 1 glycosyl transferase 954769..955878 Acidimicrobium ferrooxidans DSM 10331 8323001 YP_003109550.1 CDS Afer_0938 NC_013124.1 955891 956373 D PFAM: cyclase/dehydrase; KEGG: fal:FRAAL0171 hypothetical protein; cyclase/dehydrase 955891..956373 Acidimicrobium ferrooxidans DSM 10331 8323002 YP_003109551.1 CDS Afer_0939 NC_013124.1 956464 957786 D PFAM: aminotransferase class I and II; KEGG: aae:aq_2094 aminotransferase; class I and II aminotransferase 956464..957786 Acidimicrobium ferrooxidans DSM 10331 8323003 YP_003109552.1 CDS Afer_0940 NC_013124.1 957757 959145 R PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: fal:FRAAL1414 GntR family transcriptional regulator; GntR family transcriptional regulator complement(957757..959145) Acidimicrobium ferrooxidans DSM 10331 8323004 YP_003109553.1 CDS Afer_0941 NC_013124.1 959275 960570 D PFAM: aminotransferase class-III; KEGG: sen:SACE_3418 aminotransferase class III; class III aminotransferase 959275..960570 Acidimicrobium ferrooxidans DSM 10331 8323005 YP_003109554.1 CDS Afer_0942 NC_013124.1 960570 962057 D TIGRFAM: methylmalonate-semialdehyde dehydrogenase; PFAM: Aldehyde Dehydrogenase; KEGG: sen:SACE_5185 methylmalonate-semialdehyde dehydrogenase (acylating); methylmalonate-semialdehyde dehydrogenase 960570..962057 Acidimicrobium ferrooxidans DSM 10331 8323006 YP_003109555.1 CDS Afer_0943 NC_013124.1 962159 963208 D TIGRFAM:S-adenosylmethionine/tRNA- ribosyltransferase -isomerase; PFAM: Queuosine biosynthesis protein; KEGG: mta:Moth_1695 S-adenosylmethionine; S-adenosylmethionine/tRNA-ribosyltransferase- isomerase 962159..963208 Acidimicrobium ferrooxidans DSM 10331 8323007 YP_003109556.1 CDS Afer_0944 NC_013124.1 963205 964341 D KEGG: rxy:Rxyl_1330 queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA- guanine transglycosylase, various specificities; PFAM: Queuine/other tRNA-ribosyltransferase; queuine tRNA-ribosyltransferase 963205..964341 Acidimicrobium ferrooxidans DSM 10331 8323008 YP_003109557.1 CDS Afer_0945 NC_013124.1 964371 965861 D TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; KEGG: sen:SACE_2025 preprotein translocase subunit SecD; protein-export membrane protein SecD 964371..965861 Acidimicrobium ferrooxidans DSM 10331 8323009 YP_003109558.1 CDS Afer_0946 NC_013124.1 965858 966907 D TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: ace:Acel_1340 preprotein translocase subunit SecF; protein-export membrane protein SecF 965858..966907 Acidimicrobium ferrooxidans DSM 10331 8323010 YP_003109559.1 CDS Afer_0947 NC_013124.1 966917 969082 D KEGG: ace:Acel_1338 (p)ppGpp synthetase I, SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; TGS domain protein; amino acid-binding ACT domain protein; metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; (p)ppGpp synthetase I SpoT/RelA 966917..969082 Acidimicrobium ferrooxidans DSM 10331 8323011 YP_003109560.1 CDS Afer_0948 NC_013124.1 969247 970887 D PFAM: amino acid permease-associated region; KEGG: tac:Ta0427 L-asparagine permease related protein; amino acid permease-associated protein 969247..970887 Acidimicrobium ferrooxidans DSM 10331 8323012 YP_003109561.1 CDS Afer_0949 NC_013124.1 971013 971369 D hypothetical protein 971013..971369 Acidimicrobium ferrooxidans DSM 10331 8323013 YP_003109562.1 CDS Afer_0950 NC_013124.1 971366 971587 D hypothetical protein 971366..971587 Acidimicrobium ferrooxidans DSM 10331 8323014 YP_003109563.1 CDS Afer_0951 NC_013124.1 971587 974151 D KEGG: mca:MCA0389 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: alanyl-tRNA synthetase class IIc; Threonyl/alanyl tRNA synthetase SAD; alanyl-tRNA synthetase 971587..974151 Acidimicrobium ferrooxidans DSM 10331 8323015 YP_003109564.1 CDS Afer_0952 NC_013124.1 974148 974564 D PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: ade:Adeh_1232 Holliday junction resolvase YqgF; Holliday junction resolvase YqgF 974148..974564 Acidimicrobium ferrooxidans DSM 10331 8323016 YP_003109565.1 CDS Afer_0953 NC_013124.1 974561 975568 D PFAM: aminodeoxychorismate lyase; KEGG: ace:Acel_1328 aminodeoxychorismate lyase; aminodeoxychorismate lyase 974561..975568 Acidimicrobium ferrooxidans DSM 10331 8323017 YP_003109566.1 CDS Afer_0954 NC_013124.1 975565 976401 D TIGRFAM: shikimate 5-dehydrogenase; PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: rxy:Rxyl_1362 shikimate dehydrogenase; shikimate 5-dehydrogenase 975565..976401 Acidimicrobium ferrooxidans DSM 10331 8323018 YP_003109567.1 CDS Afer_0955 NC_013124.1 976557 977675 R PFAM: PspA/IM30 family protein; KEGG: ace:Acel_0950 phage shock protein A, PspA; phage shock protein A, PspA complement(976557..977675) Acidimicrobium ferrooxidans DSM 10331 8323019 YP_003109568.1 CDS Afer_0956 NC_013124.1 977838 978986 D TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: nca:Noca_3461 rod shape-determining protein RodA; rod shape-determining protein RodA 977838..978986 Acidimicrobium ferrooxidans DSM 10331 8323020 YP_003109569.1 CDS Afer_0957 NC_013124.1 978976 979437 D PFAM: protein of unknown function DUF151; KEGG: sth:STH3179 hypothetical protein; hypothetical protein 978976..979437 Acidimicrobium ferrooxidans DSM 10331 8323021 YP_003109570.1 CDS Afer_0958 NC_013124.1 979447 980298 R TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase; KEGG: dac:Daci_1541 nicotinate-nucleotide pyrophosphorylase; nicotinate-nucleotide pyrophosphorylase complement(979447..980298) Acidimicrobium ferrooxidans DSM 10331 8323022 YP_003109571.1 CDS Afer_0959 NC_013124.1 980295 981770 R PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: ret:RHE_PE00440 L-aspartate oxidase; L-aspartate oxidase complement(980295..981770) Acidimicrobium ferrooxidans DSM 10331 8323023 YP_003109572.1 CDS Afer_0960 NC_013124.1 981767 982777 R KEGG: ace:Acel_1145 quinolinate synthetase; TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; quinolinate synthetase complex subunit A complement(981767..982777) Acidimicrobium ferrooxidans DSM 10331 8323024 YP_003109573.1 CDS Afer_0961 NC_013124.1 982764 983465 R KEGG: nha:Nham_2818 hypothetical protein; hypothetical protein complement(982764..983465) Acidimicrobium ferrooxidans DSM 10331 8323025 YP_003109574.1 CDS Afer_0962 NC_013124.1 983626 983904 D PFAM: SirA family protein; KEGG: sso:SSO8861 hypothetical protein; SirA family protein 983626..983904 Acidimicrobium ferrooxidans DSM 10331 8323026 YP_003109575.1 CDS Afer_0963 NC_013124.1 984162 984545 D PFAM: DsrE family protein; KEGG: afu:AF0187 hypothetical protein; DsrE family protein 984162..984545 Acidimicrobium ferrooxidans DSM 10331 8323027 YP_003109576.1 CDS Afer_0964 NC_013124.1 984545 985264 D KEGG: cts:Ctha_0138 hypothetical protein; hypothetical protein 984545..985264 Acidimicrobium ferrooxidans DSM 10331 8323028 YP_003109577.1 CDS Afer_0965 NC_013124.1 985261 986451 D PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: cts:Ctha_0137 protein of unknown function DUF224 cysteine-rich region domain protein; hypothetical protein 985261..986451 Acidimicrobium ferrooxidans DSM 10331 8323029 YP_003109578.1 CDS Afer_0966 NC_013124.1 986461 987516 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; HI0933 family protein; KEGG: cts:Ctha_0136 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 986461..987516 Acidimicrobium ferrooxidans DSM 10331 8323030 YP_003109579.1 CDS Afer_0967 NC_013124.1 987513 988205 D KEGG: cts:Ctha_0134 hypothetical protein; hypothetical protein 987513..988205 Acidimicrobium ferrooxidans DSM 10331 8323031 YP_003109580.1 CDS Afer_0968 NC_013124.1 988205 989518 D PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: cts:Ctha_0133 protein of unknown function DUF224 cysteine-rich region domain protein; hypothetical protein 988205..989518 Acidimicrobium ferrooxidans DSM 10331 8323032 YP_003109581.1 CDS Afer_0969 NC_013124.1 989529 990302 D PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: cts:Ctha_0132 electron transfer flavoprotein alpha/beta-subunit; Electron transfer flavoprotein alpha/beta- subunit 989529..990302 Acidimicrobium ferrooxidans DSM 10331 8323033 YP_003109582.1 CDS Afer_0970 NC_013124.1 990314 991264 D PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: cts:Ctha_0131 electron transfer flavoprotein alpha subunit; Electron transfer flavoprotein alpha subunit 990314..991264 Acidimicrobium ferrooxidans DSM 10331 8323034 YP_003109583.1 CDS Afer_0971 NC_013124.1 991273 993444 D PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: bph:Bphy_5959 hypothetical protein; hypothetical protein 991273..993444 Acidimicrobium ferrooxidans DSM 10331 8323035 YP_003109584.1 CDS Afer_0972 NC_013124.1 993441 993782 D hypothetical protein 993441..993782 Acidimicrobium ferrooxidans DSM 10331 8323036 YP_003109585.1 CDS Afer_0973 NC_013124.1 993881 994315 D PFAM: glycine cleavage H-protein; KEGG: aae:aq_1657 glycine cleavage system protein H; glycine cleavage H-protein 993881..994315 Acidimicrobium ferrooxidans DSM 10331 8323037 YP_003109586.1 CDS Afer_0974 NC_013124.1 994325 994801 D PFAM: glycine cleavage H-protein; KEGG: aae:aq_944 glycine cleavage system protein H; glycine cleavage H-protein 994325..994801 Acidimicrobium ferrooxidans DSM 10331 8323038 YP_003109587.1 CDS Afer_0975 NC_013124.1 994826 994933 R hypothetical protein complement(994826..994933) Acidimicrobium ferrooxidans DSM 10331 8323039 YP_003109588.1 CDS Afer_0976 NC_013124.1 995142 995633 D KEGG: nca:Noca_2931 NADH dehydrogenase; NADH dehydrogenase 995142..995633 Acidimicrobium ferrooxidans DSM 10331 8323040 YP_003109589.1 CDS Afer_0977 NC_013124.1 995633 996271 D PFAM: Rieske [2Fe-2S] domain protein; KEGG: stp:Strop_1655 Rieske (2Fe-2S) domain- containing protein; Rieske (2Fe-2S) domain-containing protein 995633..996271 Acidimicrobium ferrooxidans DSM 10331 8323041 YP_003109590.1 CDS Afer_0978 NC_013124.1 998345 999175 R PFAM: Integrase catalytic region; KEGG: amr:AM1_A0193 integrase, catalytic region; integrase catalytic subunit complement(998345..999175) Acidimicrobium ferrooxidans DSM 10331 8323042 YP_003109591.1 CDS Afer_0979 NC_013124.1 999194 1000072 R PFAM: Integrase catalytic region; KEGG: amr:AM1_A0193 integrase, catalytic region; integrase catalytic subunit complement(999194..1000072) Acidimicrobium ferrooxidans DSM 10331 8323043 YP_003109592.1 CDS Afer_0980 NC_013124.1 1000069 1000398 R PFAM: transposase IS3/IS911 family protein; KEGG: rxy:Rxyl_1861 transposase IS3/IS911; transposase IS3/IS911 family protein complement(1000069..1000398) Acidimicrobium ferrooxidans DSM 10331 8323044 YP_003109593.1 CDS Afer_0981 NC_013124.1 1000505 1000834 R PFAM: transposase IS3/IS911 family protein; KEGG: rxy:Rxyl_1861 transposase IS3/IS911; transposase IS3/IS911 family protein complement(1000505..1000834) Acidimicrobium ferrooxidans DSM 10331 8323045 YP_003109594.1 CDS Afer_0982 NC_013124.1 1003367 1003645 R TIGRFAM: CRISPR-associated protein Cas2; KEGG: sgr:SGR_3548 CRISPR-associated Cas2 family protein; CRISPR-associated protein Cas2 complement(1003367..1003645) Acidimicrobium ferrooxidans DSM 10331 8323046 YP_003109595.1 CDS Afer_0983 NC_013124.1 1003642 1004586 R TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: saq:Sare_2578 CRISPR-associated Cas1 family protein; CRISPR-associated protein Cas1 complement(1003642..1004586) Acidimicrobium ferrooxidans DSM 10331 8323047 YP_003109596.1 CDS Afer_0984 NC_013124.1 1004583 1005263 R TIGRFAM: CRISPR-associated protein, Cse3 family; PFAM: CRISPR-associated protein CT1974; KEGG: saq:Sare_2577 CRISPR-associated CSE3 family protein; CRISPR-associated protein, Cse3 family complement(1004583..1005263) Acidimicrobium ferrooxidans DSM 10331 8323048 YP_003109597.1 CDS Afer_0985 NC_013124.1 1005265 1006026 R TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; KEGG: fra:Francci3_0021 CRISPR-associated Cas5e family protein; CRISPR-associated protein Cas5 family complement(1005265..1006026) Acidimicrobium ferrooxidans DSM 10331 8323049 YP_003109598.1 CDS Afer_0986 NC_013124.1 1006023 1007183 R TIGRFAM: CRISPR-associated protein, Cse4 family; KEGG: saq:Sare_2575 CRISPR-associated CSE4 family protein; CRISPR-associated protein, Cse4 family complement(1006023..1007183) Acidimicrobium ferrooxidans DSM 10331 8323050 YP_003109599.1 CDS Afer_0987 NC_013124.1 1007180 1007752 R TIGRFAM: CRISPR-associated protein, Cse2 family; KEGG: fra:Francci3_0019 hypothetical protein; CRISPR-associated protein, Cse2 family complement(1007180..1007752) Acidimicrobium ferrooxidans DSM 10331 8323051 YP_003109600.1 CDS Afer_0988 NC_013124.1 1007749 1009371 R TIGRFAM: CRISPR-associated protein, Cse1 family; KEGG: sgr:SGR_3542 CRISPR-associated helicase Cas3 family protein protein; CRISPR-associated protein, Cse1 family complement(1007749..1009371) Acidimicrobium ferrooxidans DSM 10331 8323052 YP_003109601.1 CDS Afer_0989 NC_013124.1 1009361 1012129 R KEGG: fal:FRAAL0452 hypothetical protein; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases; CRISPR-associated helicase Cas3 complement(1009361..1012129) Acidimicrobium ferrooxidans DSM 10331 8323053 YP_003109602.1 CDS Afer_0990 NC_013124.1 1012347 1013483 D KEGG: mkm:Mkms_5906 integrase, catalytic region; hypothetical protein 1012347..1013483 Acidimicrobium ferrooxidans DSM 10331 8323054 YP_003109603.1 CDS Afer_0992 NC_013124.1 1014610 1015383 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: msm:MSMEG_1372 ABC transporter ATP-binding protein; ABC transporter-like protein complement(1014610..1015383) Acidimicrobium ferrooxidans DSM 10331 8323056 YP_003109604.1 CDS Afer_0993 NC_013124.1 1015380 1016426 R PFAM: inner-membrane translocator; KEGG: rxy:Rxyl_0947 inner-membrane translocator; Monosaccharide-transporting ATPase complement(1015380..1016426) Acidimicrobium ferrooxidans DSM 10331 8323057 YP_003109605.1 CDS Afer_0994 NC_013124.1 1016522 1017571 R PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: acr:Acry_1366 periplasmic binding protein/LacI transcriptional regulator; periplasmic binding protein/LacI transcriptional regulator complement(1016522..1017571) Acidimicrobium ferrooxidans DSM 10331 8323058 YP_003109606.1 CDS Afer_0995 NC_013124.1 1017650 1018699 R PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: cmi:CMM_2841 LacI family transcriptional regulator; LacI family transcriptional regulator complement(1017650..1018699) Acidimicrobium ferrooxidans DSM 10331 8323059 YP_003109607.1 CDS Afer_0996 NC_013124.1 1018822 1019718 R PFAM: PfkB domain protein; KEGG: saq:Sare_3490 ribokinase-like domain- containing protein; PfkB domain-containing protein complement(1018822..1019718) Acidimicrobium ferrooxidans DSM 10331 8323060 YP_003109608.1 CDS Afer_0997 NC_013124.1 1019748 1019963 R KEGG: nca:Noca_4428 oxidoreductase; oxidoreductase complement(1019748..1019963) Acidimicrobium ferrooxidans DSM 10331 8323061 YP_003109609.1 CDS Afer_0998 NC_013124.1 1019956 1021182 R PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; KEGG: sco:SCP1.160c oxidoreductase; Respiratory-chain NADH dehydrogenase domain 51 kDa subunit complement(1019956..1021182) Acidimicrobium ferrooxidans DSM 10331 8323062 YP_003109610.1 CDS Afer_0999 NC_013124.1 1021179 1022285 R KEGG: nca:Noca_3830 ferric reductase domain- containing protein; hypothetical protein complement(1021179..1022285) Acidimicrobium ferrooxidans DSM 10331 8323063 YP_003109611.1 CDS Afer_1000 NC_013124.1 1022279 1023145 R PFAM: ApbE family lipoprotein; KEGG: fal:FRAAL3949 thiamine biosynthesis lipoprotein, ApbE-like; ApbE family lipoprotein complement(1022279..1023145) Acidimicrobium ferrooxidans DSM 10331 8323064 YP_003109612.1 CDS Afer_1001 NC_013124.1 1023147 1023431 R KEGG: K11245 mating pheromone-induced death protein 2; hypothetical protein complement(1023147..1023431) Acidimicrobium ferrooxidans DSM 10331 8323065 YP_003109613.1 CDS Afer_1002 NC_013124.1 1023549 1024637 R PFAM: biotin/lipoate A/B protein ligase; KEGG: cts:Ctha_0125 biotin/lipoate A/B protein ligase; biotin/lipoate A/B protein ligase complement(1023549..1024637) Acidimicrobium ferrooxidans DSM 10331 8323066 YP_003109614.1 CDS Afer_1003 NC_013124.1 1024634 1025968 R PFAM: cell cycle protein; KEGG: fal:FRAAL6752 cell division protein FtsW; cell cycle protein complement(1024634..1025968) Acidimicrobium ferrooxidans DSM 10331 8323067 YP_003109615.1 CDS Afer_1004 NC_013124.1 1026092 1028161 D PFAM: Polyphosphate kinase; KEGG: saq:Sare_1153 polyphosphate kinase; polyphosphate kinase 1026092..1028161 Acidimicrobium ferrooxidans DSM 10331 8323068 YP_003109616.1 CDS Afer_1005 NC_013124.1 1028158 1028853 D PFAM: adenylate cyclase; KEGG: sma:SAV_5460 hypothetical protein; adenylate cyclase 1028158..1028853 Acidimicrobium ferrooxidans DSM 10331 8323069 YP_003109617.1 CDS Afer_1006 NC_013124.1 1028841 1030415 D PFAM: Ppx/GppA phosphatase; metal-dependent phosphohydrolase HD sub domain; KEGG: gfo:GFO_3499 exopolyphosphatase; Ppx/GppA phosphatase 1028841..1030415 Acidimicrobium ferrooxidans DSM 10331 8323070 YP_003109618.1 CDS Afer_1007 NC_013124.1 1030439 1031776 R PFAM: FAD linked oxidase domain protein; KEGG: mmi:MMAR_0388 oxidoreductase; FAD linked oxidase domain-containing protein complement(1030439..1031776) Acidimicrobium ferrooxidans DSM 10331 8323071 YP_003109619.1 CDS Afer_1008 NC_013124.1 1031982 1033643 D PFAM: phosphoglucose isomerase (PGI); KEGG: nfa:nfa49980 glucose-6-phosphate isomerase; Glucose-6-phosphate isomerase 1031982..1033643 Acidimicrobium ferrooxidans DSM 10331 8323072 YP_003109620.1 CDS Afer_1009 NC_013124.1 1033640 1034713 D catalyzes the reversible formation of D-erythrose 4-phosphate and D-fructose 6-phosphate from sedoheptulose 7-phosphate and D-glyceraldehyde 3-phosphate; transaldolase 1033640..1034713 Acidimicrobium ferrooxidans DSM 10331 8323073 YP_003109621.1 CDS Afer_1010 NC_013124.1 1034710 1035699 D TIGRFAM: quinone oxidoreductase, YhdH/YhfP family; PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: dsh:Dshi_2319 quinone oxidoreductase YhdH/YhfP; quinone oxidoreductase, YhdH/YhfP family 1034710..1035699 Acidimicrobium ferrooxidans DSM 10331 8323074 YP_003109622.1 CDS Afer_1011 NC_013124.1 1035703 1036317 D TIGRFAM: dephospho-CoA kinase; PFAM: Dephospho-CoA kinase; KEGG: cdi:DIP1152 dephospho-CoA kinase; dephospho-CoA kinase 1035703..1036317 Acidimicrobium ferrooxidans DSM 10331 8323075 YP_003109623.1 CDS Afer_1012 NC_013124.1 1036342 1037199 D PFAM: Metal-dependent hydrolase HDOD; KEGG: dar:Daro_1978 HDIG; signal transduction protein 1036342..1037199 Acidimicrobium ferrooxidans DSM 10331 8323076 YP_003109624.1 CDS Afer_1013 NC_013124.1 1037212 1039215 D KEGG: chy:CHY_0258 excinuclease ABC subunit B; TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; UvrB/UvrC protein; SMART: DEAD-like helicases ; helicase domain protein; excinuclease ABC subunit B 1037212..1039215 Acidimicrobium ferrooxidans DSM 10331 8323077 YP_003109625.1 CDS Afer_1014 NC_013124.1 1039302 1040666 D PFAM: beta-lactamase domain protein; KEGG: nca:Noca_2937 beta-lactamase domain- containing protein; beta-lactamase domain-containing protein 1039302..1040666 Acidimicrobium ferrooxidans DSM 10331 8323078 YP_003109626.1 CDS Afer_1015 NC_013124.1 1040709 1041209 D KEGG: rxy:Rxyl_1675 carbohydrate kinase, FGGY; hypothetical protein 1040709..1041209 Acidimicrobium ferrooxidans DSM 10331 8323079 YP_003109627.1 CDS Afer_1016 NC_013124.1 1041191 1041532 R PFAM: Domain of unknown function DUF1791; KEGG: aau:AAur_pTC10239 hypothetical protein; hypothetical protein complement(1041191..1041532) Acidimicrobium ferrooxidans DSM 10331 8323080 YP_003109628.1 CDS Afer_1017 NC_013124.1 1041529 1042020 R KEGG: ace:Acel_0440 hypothetical protein; hypothetical protein complement(1041529..1042020) Acidimicrobium ferrooxidans DSM 10331 8323081 YP_003109629.1 CDS Afer_1018 NC_013124.1 1042229 1043167 D PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; 3-beta hydroxysteroid dehydrogenase/isomerase; dTDP-4-dehydrorhamnose reductase; short-chain dehydrogenase/reductase SDR; KEGG: sen:SACE_5693 NAD-dependent epimerase/dehydratase; NAD-dependent epimerase/dehydratase 1042229..1043167 Acidimicrobium ferrooxidans DSM 10331 8323082 YP_003109630.1 CDS Afer_1019 NC_013124.1 1043463 1044311 R KEGG: cau:Caur_3200 uncharacterized component of anaerobic dehydrogenase-like protein; hypothetical protein complement(1043463..1044311) Acidimicrobium ferrooxidans DSM 10331 8323083 YP_003109631.1 CDS Afer_1020 NC_013124.1 1044292 1047225 R PFAM: molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; molybdopterin oxidoreductase; KEGG: cau:Caur_3201 nitrate reductase; molydopterin dinucleotide-binding subunit complement(1044292..1047225) Acidimicrobium ferrooxidans DSM 10331 8323084 YP_003109632.1 CDS Afer_1021 NC_013124.1 1047246 1048784 R PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; Polysulphide reductase NrfD; KEGG: nca:Noca_2933 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(1047246..1048784) Acidimicrobium ferrooxidans DSM 10331 8323085 YP_003109633.1 CDS Afer_1022 NC_013124.1 1049066 1049311 R KEGG: ajs:Ajs_3417 hypothetical protein; hypothetical protein complement(1049066..1049311) Acidimicrobium ferrooxidans DSM 10331 8323086 YP_003109634.1 CDS Afer_1023 NC_013124.1 1049398 1051941 R KEGG: afw:Anae109_1828 hypothetical protein; hypothetical protein complement(1049398..1051941) Acidimicrobium ferrooxidans DSM 10331 8323087 YP_003109635.1 CDS Afer_1024 NC_013124.1 1051923 1052729 R PFAM: glycosyl transferase family 2; KEGG: ace:Acel_0441 glycosyl transferase family protein; family 2 glycosyl transferase complement(1051923..1052729) Acidimicrobium ferrooxidans DSM 10331 8323088 YP_003109636.1 CDS Afer_1025 NC_013124.1 1053128 1057123 D KEGG: ace:Acel_1476 vitamin B12-dependent ribonucleotide reductase; TIGRFAM: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; PFAM: Ribonucleotide reductase class II vitamin B12- dependent; ribonucleotide reductase large subunit; SMART: Hedgehog/intein hint domain protein; ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 1053128..1057123 Acidimicrobium ferrooxidans DSM 10331 8323089 YP_003109637.1 CDS Afer_1026 NC_013124.1 1057527 1059215 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerization region; Rhodanese domain protein; SMART: Rhodanese domain protein; KEGG: cef:CE0339 pyridine nucleotide- disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1057527..1059215 Acidimicrobium ferrooxidans DSM 10331 8323090 YP_003109638.1 CDS Afer_1027 NC_013124.1 1059265 1060884 R PFAM: AMP-dependent synthetase and ligase; KEGG: rpi:Rpic_0109 AMP-dependent synthetase and ligase; AMP-dependent synthetase and ligase complement(1059265..1060884) Acidimicrobium ferrooxidans DSM 10331 8323091 YP_003109639.1 CDS Afer_1028 NC_013124.1 1061064 1061666 R PFAM: regulatory protein TetR; KEGG: nca:Noca_4111 regulatory protein, TetR; TetR family transcriptional regulator complement(1061064..1061666) Acidimicrobium ferrooxidans DSM 10331 8323092 YP_003109640.1 CDS Afer_1029 NC_013124.1 1061852 1062997 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: mab:MAB_1851 acyl-CoA dehydrogenase FadE; acyl-CoA dehydrogenase domain-containing protein 1061852..1062997 Acidimicrobium ferrooxidans DSM 10331 8323093 YP_003109641.1 CDS Afer_1030 NC_013124.1 1062994 1063803 D KEGG: sen:SACE_3125 hypothetical protein; hypothetical protein 1062994..1063803 Acidimicrobium ferrooxidans DSM 10331 8323094 YP_003109642.1 CDS Afer_1031 NC_013124.1 1063807 1065450 D PFAM: carboxyl transferase; KEGG: stp:Strop_4327 propionyl-CoA carboxylase; Propionyl-CoA carboxylase 1063807..1065450 Acidimicrobium ferrooxidans DSM 10331 8323095 YP_003109643.1 CDS Afer_1032 NC_013124.1 1065447 1067387 D PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; protein of unknown function DUF201; phosphoribosylglycinamide synthetase; biotin/lipoyl attachment domain-containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: fal:FRAAL1668 acetyl-/propionyl-coenzyme A carboxylase alpha chain; carbamoyl-phosphate synthase L chain ATP- binding 1065447..1067387 Acidimicrobium ferrooxidans DSM 10331 8323096 YP_003109644.1 CDS Afer_1033 NC_013124.1 1067388 1069154 D PFAM: protein of unknown function DUF1446; KEGG: mjl:Mjls_3217 hypothetical protein; hypothetical protein 1067388..1069154 Acidimicrobium ferrooxidans DSM 10331 8323097 YP_003109645.1 CDS Afer_1034 NC_013124.1 1069151 1069939 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: stp:Strop_3459 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase 1069151..1069939 Acidimicrobium ferrooxidans DSM 10331 8323098 YP_003109646.1 CDS Afer_1035 NC_013124.1 1070303 1071736 D PFAM: amino acid permease-associated region; KEGG: acr:Acry_0648 amino acid permease-associated region; amino acid permease-associated protein 1070303..1071736 Acidimicrobium ferrooxidans DSM 10331 8323099 YP_003109647.1 CDS Afer_1036 NC_013124.1 1071821 1073839 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: sma:SAV_5831 multidrug-efflux transporter; EmrB/QacA subfamily drug resistance transporter complement(1071821..1073839) Acidimicrobium ferrooxidans DSM 10331 8323100 YP_003109648.1 CDS Afer_1037 NC_013124.1 1073836 1074360 R PFAM: regulatory protein MarR; regulatory protein ArsR; SMART: regulatory protein MarR; KEGG: rsa:RSal33209_0720 MarR family transcriptional regulator; MarR family transcriptional regulator complement(1073836..1074360) Acidimicrobium ferrooxidans DSM 10331 8323101 YP_003109649.1 CDS Afer_1038 NC_013124.1 1074603 1075166 D PFAM: PEBP family protein; KEGG: mpo:Mpop_0898 PEBP family protein; PEBP family protein 1074603..1075166 Acidimicrobium ferrooxidans DSM 10331 8323102 YP_003109650.1 CDS Afer_1039 NC_013124.1 1075206 1076567 R PFAM: Chloride channel core; KEGG: rha:RHA1_ro05905 chloride channel transporter; Chloride channel core complement(1075206..1076567) Acidimicrobium ferrooxidans DSM 10331 8323103 YP_003109651.1 CDS Afer_1040 NC_013124.1 1076665 1077324 R PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: ace:Acel_0040 TetR family transcriptional regulator; regulatory protein TetR complement(1076665..1077324) Acidimicrobium ferrooxidans DSM 10331 8323104 YP_003109652.1 CDS Afer_1041 NC_013124.1 1077491 1078867 R PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: sen:SACE_5887 L-lactate dehydrogenase; L-lactate dehydrogenase (cytochrome) complement(1077491..1078867) Acidimicrobium ferrooxidans DSM 10331 8323105 YP_003109653.1 CDS Afer_1042 NC_013124.1 1078900 1079178 R hypothetical protein complement(1078900..1079178) Acidimicrobium ferrooxidans DSM 10331 8323106 YP_003109654.1 CDS Afer_1043 NC_013124.1 1079347 1080111 R KEGG: cau:Caur_0271 ABC-2 type transporter; ABC-2 type transporter complement(1079347..1080111) Acidimicrobium ferrooxidans DSM 10331 8323107 YP_003109655.1 CDS Afer_1044 NC_013124.1 1080108 1081103 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rrs:RoseRS_4617 ABC transporter related; ABC transporter-like protein complement(1080108..1081103) Acidimicrobium ferrooxidans DSM 10331 8323108 YP_003109656.1 CDS Afer_1045 NC_013124.1 1081290 1081400 D hypothetical protein 1081290..1081400 Acidimicrobium ferrooxidans DSM 10331 8323109 YP_003109657.1 CDS Afer_1046 NC_013124.1 1081552 1083783 R KEGG: spv:SPH_1885 cell wall surface anchor family protein; hypothetical protein complement(1081552..1083783) Acidimicrobium ferrooxidans DSM 10331 8323110 YP_003109658.1 CDS Afer_1049 NC_013124.1 1084894 1086231 D hypothetical protein 1084894..1086231 Acidimicrobium ferrooxidans DSM 10331 8323113 YP_003109659.1 CDS Afer_1051 NC_013124.1 1086673 1087668 D PFAM: Integrase catalytic region; KEGG: rha:RHA1_ro11026 transposase; integrase catalytic subunit 1086673..1087668 Acidimicrobium ferrooxidans DSM 10331 8323115 YP_003109660.1 CDS Afer_1052 NC_013124.1 1088132 1089232 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cts:Ctha_0126 radical SAM domain protein; Radical SAM domain-containing protein complement(1088132..1089232) Acidimicrobium ferrooxidans DSM 10331 8323116 YP_003109661.1 CDS Afer_1053 NC_013124.1 1089229 1090302 R PFAM: biotin/lipoate A/B protein ligase; KEGG: cts:Ctha_0128 biotin/lipoate A/B protein ligase; biotin/lipoate A/B protein ligase complement(1089229..1090302) Acidimicrobium ferrooxidans DSM 10331 8323117 YP_003109662.1 CDS Afer_1054 NC_013124.1 1090299 1091270 R PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cts:Ctha_0127 radical SAM domain protein; Radical SAM domain-containing protein complement(1090299..1091270) Acidimicrobium ferrooxidans DSM 10331 8323118 YP_003109663.1 CDS Afer_1055 NC_013124.1 1091270 1091713 R PFAM: glycine cleavage H-protein; KEGG: sto:ST1894 glycine cleavage system H protein; glycine cleavage H-protein complement(1091270..1091713) Acidimicrobium ferrooxidans DSM 10331 8323119 YP_003109664.1 CDS Afer_1056 NC_013124.1 1091685 1092764 R PFAM: biotin/lipoate A/B protein ligase; KEGG: cts:Ctha_0125 biotin/lipoate A/B protein ligase; biotin/lipoate A/B protein ligase complement(1091685..1092764) Acidimicrobium ferrooxidans DSM 10331 8323120 YP_003109665.1 CDS Afer_1057 NC_013124.1 1092910 1093650 D PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gtn:GTNG_0470 enoyl-(acyl carrier protein) reductase; short-chain dehydrogenase/reductase SDR 1092910..1093650 Acidimicrobium ferrooxidans DSM 10331 8323121 YP_003109666.1 CDS Afer_1058 NC_013124.1 1094217 1097450 D PFAM: protein of unknown function DUF214; KEGG: nca:Noca_2867 hypothetical protein; hypothetical protein 1094217..1097450 Acidimicrobium ferrooxidans DSM 10331 8323122 YP_003109667.1 CDS Afer_1059 NC_013124.1 1097447 1098298 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nca:Noca_2866 ABC transporter related; ABC transporter-like protein 1097447..1098298 Acidimicrobium ferrooxidans DSM 10331 8323123 YP_003109668.1 CDS Afer_1060 NC_013124.1 1098295 1098987 D PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgr:SGR_3233 ABC-transporter ATP- binding protein; ABC transporter-like protein 1098295..1098987 Acidimicrobium ferrooxidans DSM 10331 8323124 YP_003109669.1 CDS Afer_1061 NC_013124.1 1098992 1100473 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: sso:SSO1162 multidrug resistance protein; EmrB/QacA subfamily drug resistance transporter complement(1098992..1100473) Acidimicrobium ferrooxidans DSM 10331 8323125 YP_003109670.1 CDS Afer_1062 NC_013124.1 1101669 1102940 D PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_3045 major facilitator superfamily permease; major facilitator superfamily protein 1101669..1102940 Acidimicrobium ferrooxidans DSM 10331 8323127 YP_003109671.1 CDS Afer_1063 NC_013124.1 1103041 1103385 D KEGG: ooe:OEOE_0191 hypothetical protein; hypothetical protein 1103041..1103385 Acidimicrobium ferrooxidans DSM 10331 8323128 YP_003109672.1 CDS Afer_1064 NC_013124.1 1103495 1104931 D PFAM: protein of unknown function DUF1212; KEGG: rha:RHA1_ro04718 amino acid export carrier protein; hypothetical protein 1103495..1104931 Acidimicrobium ferrooxidans DSM 10331 8323129 YP_003109673.1 CDS Afer_1065 NC_013124.1 1105109 1106323 D PFAM: major facilitator superfamily MFS_1; KEGG: nca:Noca_3966 major facilitator transporter; major facilitator superfamily protein 1105109..1106323 Acidimicrobium ferrooxidans DSM 10331 8323130 YP_003109674.1 CDS Afer_1066 NC_013124.1 1106342 1107205 R hypothetical protein complement(1106342..1107205) Acidimicrobium ferrooxidans DSM 10331 8323131 YP_003109675.1 CDS Afer_1067 NC_013124.1 1107202 1108083 R KEGG: fre:Franean1_0904 hypothetical protein; hypothetical protein complement(1107202..1108083) Acidimicrobium ferrooxidans DSM 10331 8323132 YP_003109676.1 CDS Afer_1068 NC_013124.1 1108080 1109081 R PFAM: aminoglycoside phosphotransferase; KEGG: azc:AZC_2708 aminoglycoside phosphotransferase; aminoglycoside phosphotransferase complement(1108080..1109081) Acidimicrobium ferrooxidans DSM 10331 8323133 YP_003109677.1 CDS Afer_1069 NC_013124.1 1109129 1109830 D KEGG: scl:sce5793 hypothetical protein; hypothetical protein 1109129..1109830 Acidimicrobium ferrooxidans DSM 10331 8323134 YP_003109678.1 CDS Afer_1070 NC_013124.1 1109911 1110840 D PFAM: peptidase T2 asparaginase 2; KEGG: rca:Rcas_4430 asparaginase; Asparaginase 1109911..1110840 Acidimicrobium ferrooxidans DSM 10331 8323135 YP_003109679.1 CDS Afer_1071 NC_013124.1 1110869 1112392 D PFAM: Peptidase S53 propeptide; KEGG: bph:Bphy_5054 peptidase S53 propeptide; peptidase S53 propeptide 1110869..1112392 Acidimicrobium ferrooxidans DSM 10331 8323136 YP_003109680.1 CDS Afer_1072 NC_013124.1 1112482 1112889 R PFAM: OsmC family protein; KEGG: rha:RHA1_ro05070 hypothetical protein; OsmC family protein complement(1112482..1112889) Acidimicrobium ferrooxidans DSM 10331 8323137 YP_003109681.1 CDS Afer_1073 NC_013124.1 1113015 1113476 D KEGG: ppg:PputGB1_0814 hypothetical protein; hypothetical protein 1113015..1113476 Acidimicrobium ferrooxidans DSM 10331 8323138 YP_003109682.1 CDS Afer_1075 NC_013124.1 1118886 1119404 D KEGG: fra:Francci3_1316 hypothetical protein; hypothetical protein 1118886..1119404 Acidimicrobium ferrooxidans DSM 10331 8323144 YP_003109683.1 CDS Afer_1076 NC_013124.1 1119374 1120192 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pac:PPA1530 ABC transporter ATP-binding protein; ABC transporter-like protein complement(1119374..1120192) Acidimicrobium ferrooxidans DSM 10331 8323145 YP_003109684.1 CDS Afer_1077 NC_013124.1 1120213 1120623 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: sco:SCO5851 integral membrane protein; hypothetical protein complement(1120213..1120623) Acidimicrobium ferrooxidans DSM 10331 8323146 YP_003109685.1 CDS Afer_1078 NC_013124.1 1120705 1121694 D KEGG: azo:azo2612 GAF/GGDEF-domain containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 1120705..1121694 Acidimicrobium ferrooxidans DSM 10331 8323147 YP_003109686.1 CDS Afer_1079 NC_013124.1 1121926 1123209 R PFAM: RNA binding S1 domain protein; SMART: RNA binding S1 domain protein; KEGG: saq:Sare_3369 30S ribosomal protein S1; RNA binding S1 domain-containing protein complement(1121926..1123209) Acidimicrobium ferrooxidans DSM 10331 8323148 YP_003109687.1 CDS Afer_1080 NC_013124.1 1123306 1125966 R KEGG: mtf:TBFG_11645 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease; SMART: 5'-3' exonuclease; DNA-directed DNA polymerase; Helix-hairpin-helix domain protein class 2; DNA polymerase I complement(1123306..1125966) Acidimicrobium ferrooxidans DSM 10331 8323149 YP_003109688.1 CDS Afer_1081 NC_013124.1 1125935 1126546 R PFAM: response regulator receiver; ANTAR domain protein; SMART: response regulator receiver; KEGG: fre:Franean1_2035 response regulator receiver/ANTAR domain-containing protein; response regulator receiver and ANTAR domain-containing protein complement(1125935..1126546) Acidimicrobium ferrooxidans DSM 10331 8323150 YP_003109689.1 CDS Afer_1082 NC_013124.1 1126622 1127290 D PFAM: beta-lactamase domain protein; KEGG: saq:Sare_1808 beta-lactamase domain- containing protein; beta-lactamase domain-containing protein 1126622..1127290 Acidimicrobium ferrooxidans DSM 10331 8323151 YP_003109690.1 CDS Afer_1084 NC_013124.1 1129004 1130389 R PFAM: FAD linked oxidase domain protein; molybdopterin dehydrogenase FAD-binding; KEGG: mtf:TBFG_12303 dehydrogenase; FAD linked oxidase domain-containing protein complement(1129004..1130389) Acidimicrobium ferrooxidans DSM 10331 8323154 YP_003109691.1 CDS Afer_1085 NC_013124.1 1130777 1132015 D PFAM: Acyl transferase; KEGG: bsu:BSU15900 acyl-carrier-protein S- malonyltransferase; acyl transferase 1130777..1132015 Acidimicrobium ferrooxidans DSM 10331 8323155 YP_003109692.1 CDS Afer_1086 NC_013124.1 1132024 1132944 D KEGG: dau:Daud_0639 3-oxoacyl-(acyl-carrier- protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III; 3-oxoacyl-(acyl-carrier-protein) synthase III 1132024..1132944 Acidimicrobium ferrooxidans DSM 10331 8323156 YP_003109693.1 CDS Afer_1087 NC_013124.1 1132941 1133660 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ace:Acel_1151 3-oxoacyl-[acyl-carrier- protein] reductase; short-chain dehydrogenase/reductase SDR 1132941..1133660 Acidimicrobium ferrooxidans DSM 10331 8323157 YP_003109694.1 CDS Afer_1088 NC_013124.1 1133768 1134010 D TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: syn:ssl2084 acyl carrier protein; acyl carrier protein 1133768..1134010 Acidimicrobium ferrooxidans DSM 10331 8323158 YP_003109695.1 CDS Afer_1089 NC_013124.1 1134007 1135212 D PFAM: Beta-ketoacyl synthase; KEGG: drm:Dred_2070 beta-ketoacyl synthase; beta-ketoacyl synthase 1134007..1135212 Acidimicrobium ferrooxidans DSM 10331 8323159 YP_003109696.1 CDS Afer_1090 NC_013124.1 1135170 1135403 R hypothetical protein complement(1135170..1135403) Acidimicrobium ferrooxidans DSM 10331 8323160 YP_003109697.1 CDS Afer_1091 NC_013124.1 1135482 1137038 R PFAM: glucose-methanol-choline oxidoreductase; GMC oxidoreductase; KEGG: nfa:nfa26120 oxidoreductase; glucose-methanol-choline oxidoreductase complement(1135482..1137038) Acidimicrobium ferrooxidans DSM 10331 8323161 YP_003109698.1 CDS Afer_1092 NC_013124.1 1137048 1138727 R PFAM: ABC-1 domain protein; aminoglycoside phosphotransferase; KEGG: mab:MAB_2393c hypothetical protein; ABC-1 domain-containing protein complement(1137048..1138727) Acidimicrobium ferrooxidans DSM 10331 8323162 YP_003109699.1 CDS Afer_1093 NC_013124.1 1138708 1139721 R KEGG: bxe:Bxe_B1341 6-phosphogluconate dehydrogenase-like protein; TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase NAD-binding; 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase complement(1138708..1139721) Acidimicrobium ferrooxidans DSM 10331 8323163 YP_003109700.1 CDS Afer_1094 NC_013124.1 1139745 1140554 R KEGG: fal:FRAAL4682 tryptophan synthase, alpha protein; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain; tryptophan synthase subunit alpha complement(1139745..1140554) Acidimicrobium ferrooxidans DSM 10331 8323164 YP_003109701.1 CDS Afer_1095 NC_013124.1 1140551 1141738 R catalyzes the formation of L-tryptophan from L-serine and 1-(indol-3-yl)glycerol 3-phosphate; tryptophan synthase subunit beta complement(1140551..1141738) Acidimicrobium ferrooxidans DSM 10331 8323165 YP_003109702.1 CDS Afer_1096 NC_013124.1 1141719 1142360 R PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: dau:Daud_1187 phosphoribosylanthranilate isomerase; phosphoribosylanthranilate isomerase complement(1141719..1142360) Acidimicrobium ferrooxidans DSM 10331 8323166 YP_003109703.1 CDS Afer_1097 NC_013124.1 1142323 1143138 R PFAM: Indole-3-glycerol phosphate synthase; KEGG: bvu:BVU_4091 indole-3-glycerol-phosphate synthase; Indole-3-glycerol-phosphate synthase complement(1142323..1143138) Acidimicrobium ferrooxidans DSM 10331 8323167 YP_003109704.1 CDS Afer_1098 NC_013124.1 1143309 1145084 D PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL4785 mutidrug efflux permease; major facilitator superfamily protein 1143309..1145084 Acidimicrobium ferrooxidans DSM 10331 8323168 YP_003109705.1 CDS Afer_1099 NC_013124.1 1145125 1145802 D PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: fre:Franean1_6145 two component transcriptional regulator; winged helix family two component transcriptional regulator 1145125..1145802 Acidimicrobium ferrooxidans DSM 10331 8323169 YP_003109706.1 CDS Afer_1100 NC_013124.1 1145804 1147189 D PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: bha:BH1945 two-component sensor histidine kinase; histidine kinase 1145804..1147189 Acidimicrobium ferrooxidans DSM 10331 8323170 YP_003109707.1 CDS Afer_1101 NC_013124.1 1147145 1150423 R KEGG: saq:Sare_1110 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase complement(1147145..1150423) Acidimicrobium ferrooxidans DSM 10331 8323171 YP_003109708.1 CDS Afer_1102 NC_013124.1 1150478 1151302 D TIGRFAM: folate-binding protein YgfZ; PFAM: glycine cleavage T protein (aminomethyl transferase); KEGG: ade:Adeh_2848 LigA; folate-binding protein YgfZ 1150478..1151302 Acidimicrobium ferrooxidans DSM 10331 8323172 YP_003109709.1 CDS Afer_1103 NC_013124.1 1151433 1152920 R PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; KEGG: sco:SCO2043 anthranilate synthase component I; Anthranilate synthase complement(1151433..1152920) Acidimicrobium ferrooxidans DSM 10331 8323173 YP_003109710.1 CDS Afer_1104 NC_013124.1 1152917 1153279 R PFAM: phosphoribosyl-AMP cyclohydrolase; KEGG: swo:Swol_1764 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein; phosphoribosyl-AMP cyclohydrolase complement(1152917..1153279) Acidimicrobium ferrooxidans DSM 10331 8323174 YP_003109711.1 CDS Afer_1105 NC_013124.1 1153276 1153596 R PFAM: chaperonin Cpn10; KEGG: ace:Acel_1680 chaperonin Cpn10; chaperonin Cpn10 complement(1153276..1153596) Acidimicrobium ferrooxidans DSM 10331 8323175 YP_003109712.1 CDS Afer_1106 NC_013124.1 1153619 1154383 R KEGG: gdj:Gdia_1623 imidazoleglycerol phosphate synthase, cyclase subunit; TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; imidazoleglycerol phosphate synthase, cyclase subunit complement(1153619..1154383) Acidimicrobium ferrooxidans DSM 10331 8323176 YP_003109713.1 CDS Afer_1107 NC_013124.1 1154371 1155111 R PFAM: histidine biosynthesis protein; KEGG: mta:Moth_2032 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4- carboxamide isomerase; histidine biosynthesis protein complement(1154371..1155111) Acidimicrobium ferrooxidans DSM 10331 8323177 YP_003109714.1 CDS Afer_1108 NC_013124.1 1155114 1155731 R TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; CobB/CobQ domain protein glutamine amidotransferase; KEGG: rxy:Rxyl_1104 imidazole glycerol phosphate synthase subunit HisH; imidazole glycerol phosphate synthase, glutamine amidotransferase subunit complement(1155114..1155731) Acidimicrobium ferrooxidans DSM 10331 8323178 YP_003109715.1 CDS Afer_1109 NC_013124.1 1155728 1156324 R PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: tth:TTC0061 imidazoleglycerol-phosphate dehydratase; Imidazoleglycerol-phosphate dehydratase complement(1155728..1156324) Acidimicrobium ferrooxidans DSM 10331 8323179 YP_003109716.1 CDS Afer_1110 NC_013124.1 1156321 1157355 R TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: fra:Francci3_3026 histidinol-phosphate aminotransferase; histidinol-phosphate aminotransferase complement(1156321..1157355) Acidimicrobium ferrooxidans DSM 10331 8323180 YP_003109717.1 CDS Afer_1111 NC_013124.1 1157349 1158647 R KEGG: csa:Csal_2212 histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: histidinol dehydrogenase; histidinol dehydrogenase complement(1157349..1158647) Acidimicrobium ferrooxidans DSM 10331 8323181 YP_003109718.1 CDS Afer_1112 NC_013124.1 1158739 1158930 D hypothetical protein 1158739..1158930 Acidimicrobium ferrooxidans DSM 10331 8323182 YP_003109719.1 CDS Afer_1113 NC_013124.1 1158999 1159811 D PFAM: SNARE associated Golgi protein; KEGG: cmi:CMM_1412 hypothetical protein; hypothetical protein 1158999..1159811 Acidimicrobium ferrooxidans DSM 10331 8323183 YP_003109720.1 CDS Afer_1114 NC_013124.1 1160037 1161497 R KEGG: tth:TTC1611 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; pyruvate kinase complement(1160037..1161497) Acidimicrobium ferrooxidans DSM 10331 8323184 YP_003109721.1 CDS Afer_1115 NC_013124.1 1161524 1162033 R KEGG: ace:Acel_0515 hypothetical protein; hypothetical protein complement(1161524..1162033) Acidimicrobium ferrooxidans DSM 10331 8323185 YP_003109722.1 CDS Afer_1116 NC_013124.1 1162162 1163049 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: tpd:Teth39_1647 hypothetical protein; hypothetical protein complement(1162162..1163049) Acidimicrobium ferrooxidans DSM 10331 8323186 YP_003109723.1 CDS Afer_1117 NC_013124.1 1163076 1163585 D KEGG: rci:RCIX2228 hypothetical protein; hypothetical protein 1163076..1163585 Acidimicrobium ferrooxidans DSM 10331 8323187 YP_003109724.1 CDS Afer_1118 NC_013124.1 1163506 1165029 R acts in conjunction with GvcH to form H-protein-S-aminomethyldihydrolipoyllysine from glycine; forms a heterodimer with subunit 1 to form the P protein; glycine dehydrogenase subunit 2 complement(1163506..1165029) Acidimicrobium ferrooxidans DSM 10331 8323188 YP_003109725.1 CDS Afer_1119 NC_013124.1 1165030 1166352 R PFAM: glycine cleavage system P-protein; KEGG: mta:Moth_1943 glycine dehydrogenase subunit 1; Glycine dehydrogenase complement(1165030..1166352) Acidimicrobium ferrooxidans DSM 10331 8323189 YP_003109726.1 CDS Afer_1120 NC_013124.1 1166370 1167419 R TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: mgi:Mflv_2939 glycine cleavage system aminomethyltransferase T; glycine cleavage system T protein complement(1166370..1167419) Acidimicrobium ferrooxidans DSM 10331 8323190 YP_003109727.1 CDS Afer_1121 NC_013124.1 1167454 1167891 R hypothetical protein complement(1167454..1167891) Acidimicrobium ferrooxidans DSM 10331 8323191 YP_003109728.1 CDS Afer_1122 NC_013124.1 1167955 1168533 D PFAM: CDP-alcohol phosphatidyltransferase; KEGG: kra:Krad_3101 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase 1167955..1168533 Acidimicrobium ferrooxidans DSM 10331 8323192 YP_003109729.1 CDS Afer_1123 NC_013124.1 1168572 1171136 D PFAM: Nucleotidyl transferase; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; transferase hexapeptide repeat containing protein; KEGG: tfu:Tfu_1394 mannose-1-phosphate guanylyltransferase / phosphomannomutase; nucleotidyl transferase 1168572..1171136 Acidimicrobium ferrooxidans DSM 10331 8323193 YP_003109730.1 CDS Afer_1124 NC_013124.1 1171148 1171537 D TIGRFAM: glycine cleavage system H protein; PFAM: glycine cleavage H-protein; KEGG: ace:Acel_1227 glycine cleavage system H protein; glycine cleavage system H protein 1171148..1171537 Acidimicrobium ferrooxidans DSM 10331 8323194 YP_003109731.1 CDS Afer_1125 NC_013124.1 1171534 1172028 D PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: ace:Acel_1226 FHA domain-containing protein; FHA domain-containing protein 1171534..1172028 Acidimicrobium ferrooxidans DSM 10331 8323195 YP_003109732.1 CDS Afer_1126 NC_013124.1 1172025 1172813 D PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sma:SAV_6982 hypothetical protein; MerR family transcriptional regulator 1172025..1172813 Acidimicrobium ferrooxidans DSM 10331 8323196 YP_003109733.1 CDS Afer_1127 NC_013124.1 1172888 1173115 R hypothetical protein complement(1172888..1173115) Acidimicrobium ferrooxidans DSM 10331 8323197 YP_003109734.1 CDS Afer_1128 NC_013124.1 1173210 1173716 R PFAM: protein of unknown function DUF151; KEGG: tfu:Tfu_1396 hypothetical protein; hypothetical protein complement(1173210..1173716) Acidimicrobium ferrooxidans DSM 10331 8323198 YP_003109735.1 CDS Afer_1129 NC_013124.1 1173771 1174583 R PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: mgm:Mmc1_0245 cytochrome c biogenesis protein, transmembrane region; cytochrome c biogenesis protein transmembrane protein complement(1173771..1174583) Acidimicrobium ferrooxidans DSM 10331 8323199 YP_003109736.1 CDS Afer_1130 NC_013124.1 1174682 1176157 D PFAM: major facilitator superfamily MFS_1; KEGG: sgr:SGR_469 major facilitator superfamily permease; major facilitator superfamily protein 1174682..1176157 Acidimicrobium ferrooxidans DSM 10331 8323200 YP_003109737.1 CDS Afer_1131 NC_013124.1 1176227 1177210 D KEGG: sco:SCO1215 integral membrane protein; integral membrane protein 1176227..1177210 Acidimicrobium ferrooxidans DSM 10331 8323201 YP_003109738.1 CDS Afer_1132 NC_013124.1 1177293 1178033 R PFAM: peptidase M50; KEGG: eli:ELI_03495 hypothetical protein; peptidase M50 complement(1177293..1178033) Acidimicrobium ferrooxidans DSM 10331 8323202 YP_003109739.1 CDS Afer_1133 NC_013124.1 1178033 1178932 R PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: dau:Daud_1282 tyrosine recombinase XerD; integrase family protein complement(1178033..1178932) Acidimicrobium ferrooxidans DSM 10331 8323203 YP_003109740.1 CDS Afer_1134 NC_013124.1 1178916 1179518 R PFAM: NUDIX hydrolase; KEGG: stp:Strop_1921 NUDIX hydrolase; NUDIX hydrolase complement(1178916..1179518) Acidimicrobium ferrooxidans DSM 10331 8323204 YP_003109741.1 CDS pyrG NC_013124.1 1179515 1181122 R CTP synthase; cytidine triphosphate synthetase; catalyzes the ATP-dependent amination of UTP to CTP with either L-glutamine or ammonia as the source of nitrogen; in Escherichia coli this enzyme forms a homotetramer; CTP synthetase complement(1179515..1181122) Acidimicrobium ferrooxidans DSM 10331 8323205 YP_003109742.1 CDS Afer_1136 NC_013124.1 1181168 1182775 R PFAM: SMC domain protein; SMART: AAA ATPase; KEGG: ttj:TTHA1525 DNA repair protein RecN; SMC domain-containing protein complement(1181168..1182775) Acidimicrobium ferrooxidans DSM 10331 8323206 YP_003109743.1 CDS Afer_1137 NC_013124.1 1182769 1183584 R PFAM: ATP-NAD/AcoX kinase; KEGG: ace:Acel_1246 NAD(+) kinase; ATP-NAD/AcoX kinase complement(1182769..1183584) Acidimicrobium ferrooxidans DSM 10331 8323207 YP_003109744.1 CDS Afer_1138 NC_013124.1 1183595 1184344 R KEGG: ttj:TTHA0546 hemolysin; TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein; hemolysin A complement(1183595..1184344) Acidimicrobium ferrooxidans DSM 10331 8323208 YP_003109745.1 CDS Afer_1139 NC_013124.1 1184385 1185014 D PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: sma:SAV_7489 hypothetical protein; PA-phosphatase-like phosphoesterase 1184385..1185014 Acidimicrobium ferrooxidans DSM 10331 8323209 YP_003109746.1 CDS Afer_1140 NC_013124.1 1184923 1186098 R PFAM: major facilitator superfamily MFS_1; KEGG: rxy:Rxyl_2414 major facilitator superfamily MFS_1; major facilitator superfamily protein complement(1184923..1186098) Acidimicrobium ferrooxidans DSM 10331 8323210 YP_003109747.1 CDS Afer_1141 NC_013124.1 1186377 1188215 D PFAM: extracellular solute-binding protein family 5; KEGG: saq:Sare_2145 extracellular solute-binding protein; family 5 extracellular solute-binding protein 1186377..1188215 Acidimicrobium ferrooxidans DSM 10331 8323211 YP_003109748.1 CDS Afer_1142 NC_013124.1 1188389 1189336 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_4337 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1188389..1189336 Acidimicrobium ferrooxidans DSM 10331 8323212 YP_003109749.1 CDS Afer_1143 NC_013124.1 1189365 1190324 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: stp:Strop_4338 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1189365..1190324 Acidimicrobium ferrooxidans DSM 10331 8323213 YP_003109750.1 CDS Afer_1144 NC_013124.1 1190525 1192351 D PFAM: extracellular solute-binding protein family 5; KEGG: saq:Sare_2145 extracellular solute-binding protein; family 5 extracellular solute-binding protein 1190525..1192351 Acidimicrobium ferrooxidans DSM 10331 8323214 YP_003109751.1 CDS Afer_1145 NC_013124.1 1192447 1194078 D TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: ace:Acel_0412 cell envelope-related transcriptional attenuator; cell envelope-related transcriptional attenuator 1192447..1194078 Acidimicrobium ferrooxidans DSM 10331 8323215 YP_003109752.1 CDS Afer_1146 NC_013124.1 1194111 1195046 D PFAM: pyruvate carboxyltransferase; KEGG: fre:Franean1_3719 pyruvate carboxyltransferase; pyruvate carboxyltransferase 1194111..1195046 Acidimicrobium ferrooxidans DSM 10331 8323216 YP_003109753.1 CDS Afer_1147 NC_013124.1 1195043 1197073 R KEGG: saq:Sare_4781 oligopeptide/dipeptide ABC transporter, ATPase subunit; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; oligopeptide/dipeptide ABC transporter ATPase subunit complement(1195043..1197073) Acidimicrobium ferrooxidans DSM 10331 8323217 YP_003109754.1 CDS Afer_1148 NC_013124.1 1197811 1198938 D PFAM: Radical SAM domain protein; KEGG: nca:Noca_1430 radical SAM domain-containing protein; Radical SAM domain-containing protein 1197811..1198938 Acidimicrobium ferrooxidans DSM 10331 8323219 YP_003109755.1 CDS Afer_1149 NC_013124.1 1199120 1201084 R TIGRFAM: acetoacetyl-CoA synthase; PFAM: AMP-dependent synthetase and ligase; KEGG: mgi:Mflv_3863 acetoacetyl-CoA synthase; acetoacetyl-CoA synthase complement(1199120..1201084) Acidimicrobium ferrooxidans DSM 10331 8323220 YP_003109756.1 CDS Afer_1150 NC_013124.1 1201074 1201277 R hypothetical protein complement(1201074..1201277) Acidimicrobium ferrooxidans DSM 10331 8323221 YP_003109757.1 CDS Afer_1151 NC_013124.1 1201302 1202960 R PFAM: AMP-dependent synthetase and ligase; KEGG: sen:SACE_6960 acyl-CoA synthetase; AMP-dependent synthetase and ligase complement(1201302..1202960) Acidimicrobium ferrooxidans DSM 10331 8323222 YP_003109758.1 CDS Afer_1152 NC_013124.1 1203084 1204166 D TIGRFAM: glycine oxidase ThiO; PFAM: FAD dependent oxidoreductase; KEGG: saq:Sare_4279 glycine oxidase ThiO; glycine oxidase ThiO 1203084..1204166 Acidimicrobium ferrooxidans DSM 10331 8323223 YP_003109759.1 CDS Afer_1153 NC_013124.1 1204163 1204369 D TIGRFAM: thiamine biosynthesis protein ThiS; PFAM: thiamineS protein; KEGG: stp:Strop_3887 thiamine biosynthesis protein ThiS; thiamine biosynthesis protein ThiS 1204163..1204369 Acidimicrobium ferrooxidans DSM 10331 8323224 YP_003109760.1 CDS Afer_1154 NC_013124.1 1204366 1205133 D PFAM: thiazole biosynthesis family protein; KEGG: mmi:MMAR_0720 thiamin biosynthesis protein ThiG; thiazole biosynthesis family protein 1204366..1205133 Acidimicrobium ferrooxidans DSM 10331 8323225 YP_003109761.1 CDS Afer_1155 NC_013124.1 1205169 1205987 D KEGG: afw:Anae109_1765 phosphomethylpyrimidine kinase; TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; phosphomethylpyrimidine kinase 1205169..1205987 Acidimicrobium ferrooxidans DSM 10331 8323226 YP_003109762.1 CDS Afer_1156 NC_013124.1 1206095 1207975 D KEGG: afe:Lferr_2664 diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s); TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; SMART: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase 1206095..1207975 Acidimicrobium ferrooxidans DSM 10331 8323227 YP_003109763.1 CDS Afer_1157 NC_013124.1 1208044 1209018 R PFAM: Prephenate dehydrogenase; KEGG: krh:KRH_15220 prephenate dehydrogenase; Prephenate dehydrogenase complement(1208044..1209018) Acidimicrobium ferrooxidans DSM 10331 8323228 YP_003109764.1 CDS Afer_1158 NC_013124.1 1209011 1209886 R PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: bvi:Bcep1808_0964 chorismate mutase / prephenate dehydratase; prephenate dehydratase complement(1209011..1209886) Acidimicrobium ferrooxidans DSM 10331 8323229 YP_003109765.1 CDS Afer_1159 NC_013124.1 1209937 1210506 R PFAM: NADPH-dependent FMN reductase; KEGG: hau:Haur_2685 NAD(P)H dehydrogenase (quinone); NADPH-dependent FMN reductase complement(1209937..1210506) Acidimicrobium ferrooxidans DSM 10331 8323230 YP_003109766.1 CDS Afer_1160 NC_013124.1 1210635 1211192 D PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: scl:sce2276 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN- binding protein 1210635..1211192 Acidimicrobium ferrooxidans DSM 10331 8323231 YP_003109767.1 CDS Afer_1161 NC_013124.1 1211108 1212397 R TIGRFAM: geranylgeranyl reductase; PFAM: FAD dependent oxidoreductase; monooxygenase FAD-binding; KEGG: fre:Franean1_5969 geranylgeranyl reductase; geranylgeranyl reductase complement(1211108..1212397) Acidimicrobium ferrooxidans DSM 10331 8323232 YP_003109768.1 CDS Afer_1162 NC_013124.1 1212420 1212938 R hypothetical protein complement(1212420..1212938) Acidimicrobium ferrooxidans DSM 10331 8323233 YP_003109769.1 CDS Afer_1163 NC_013124.1 1213444 1213656 D PFAM: Heavy metal transport/detoxification protein; KEGG: mjl:Mjls_4497 heavy metal transport/detoxification protein; Heavy metal transport/detoxification protein 1213444..1213656 Acidimicrobium ferrooxidans DSM 10331 8323235 YP_003109770.1 CDS Afer_1164 NC_013124.1 1213640 1215799 D TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: ace:Acel_1652 heavy metal translocating P- type ATPase; heavy metal translocating P-type ATPase 1213640..1215799 Acidimicrobium ferrooxidans DSM 10331 8323236 YP_003109771.1 CDS Afer_1166 NC_013124.1 1217520 1217819 D TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: fra:Francci3_2678 prevent-host-death protein; prevent-host-death family protein 1217520..1217819 Acidimicrobium ferrooxidans DSM 10331 8323239 YP_003109772.1 CDS Afer_1167 NC_013124.1 1217816 1218079 D PFAM: plasmid stabilization system; KEGG: neu:NE0476 hypothetical protein; plasmid stabilization system 1217816..1218079 Acidimicrobium ferrooxidans DSM 10331 8323240 YP_003109773.1 CDS Afer_1168 NC_013124.1 1218809 1219612 D PFAM: Methyltransferase type 11; UbiE/COQ5 methyltransferase; Methyltransferase type 12; KEGG: mav:MAV_0854 methyltransferase-UbiE family protein; type 11 methyltransferase 1218809..1219612 Acidimicrobium ferrooxidans DSM 10331 8323241 YP_003109774.1 CDS Afer_1169 NC_013124.1 1219825 1220331 R KEGG: efa:EF1339 hypothetical protein; hypothetical protein complement(1219825..1220331) Acidimicrobium ferrooxidans DSM 10331 8323242 YP_003109775.1 CDS Afer_1170 NC_013124.1 1220823 1221827 R KEGG: ckl:CKL_3030 hypothetical protein; hypothetical protein complement(1220823..1221827) Acidimicrobium ferrooxidans DSM 10331 8323243 YP_003109776.1 CDS Afer_1171 NC_013124.1 1221965 1223239 R PFAM: major facilitator superfamily MFS_1; KEGG: mva:Mvan_5862 major facilitator superfamily transporter; major facilitator superfamily protein complement(1221965..1223239) Acidimicrobium ferrooxidans DSM 10331 8323244 YP_003109777.1 CDS Afer_1172 NC_013124.1 1223279 1223977 R PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; Rhodanese domain protein; KEGG: rha:RHA1_ro11220 ArsR family transcriptional regulator; ArsR family transcriptional regulator complement(1223279..1223977) Acidimicrobium ferrooxidans DSM 10331 8323245 YP_003109778.1 CDS Afer_1173 NC_013124.1 1223974 1224672 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: smd:Smed_5362 two component transcriptional regulator, winged helix family; winged helix family two component transcriptional regulator complement(1223974..1224672) Acidimicrobium ferrooxidans DSM 10331 8323246 YP_003109779.1 CDS Afer_1174 NC_013124.1 1224669 1226135 R PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: smd:Smed_5361 osmosensitive K+ channel signal transduction histidine kinase; histidine kinase complement(1224669..1226135) Acidimicrobium ferrooxidans DSM 10331 8323247 YP_003109780.1 CDS Afer_1175 NC_013124.1 1226154 1227323 D PFAM: Osmosensitive K channel His kinase sensor; UspA domain protein; KEGG: nfa:nfa15690 two-component system sensor kinase; osmosensitive K channel signal transduction histidine kinase, sensor subunit KdpD 1226154..1227323 Acidimicrobium ferrooxidans DSM 10331 8323248 YP_003109781.1 CDS Afer_1176 NC_013124.1 1227313 1227864 R PFAM: K transporting ATPase KdpC subunit; KEGG: acr:Acry_3490 potassium-transporting ATPase, C subunit; Potassium-transporting ATPase complement(1227313..1227864) Acidimicrobium ferrooxidans DSM 10331 8323249 YP_003109782.1 CDS Afer_1177 NC_013124.1 1227861 1229918 R TIGRFAM: K+-transporting ATPase, B subunit; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: fra:Francci3_3286 potassium-transporting ATPase subunit B; K+-transporting ATPase subunit B complement(1227861..1229918) Acidimicrobium ferrooxidans DSM 10331 8323250 YP_003109783.1 CDS Afer_1178 NC_013124.1 1229915 1231609 R KEGG: mlo:mll3133 potassium-transporting ATPase subunit A; TIGRFAM: potassium-transporting ATPase, A subunit; PFAM: K transporting ATPase A subunit; potassium-transporting ATPase subunit A complement(1229915..1231609) Acidimicrobium ferrooxidans DSM 10331 8323251 YP_003109784.1 CDS Afer_1179 NC_013124.1 1231739 1232191 D KEGG: mtf:TBFG_13922 transmembrane protein; hypothetical protein 1231739..1232191 Acidimicrobium ferrooxidans DSM 10331 8323252 YP_003109785.1 CDS Afer_1180 NC_013124.1 1232188 1233444 R PFAM: major facilitator superfamily MFS_1; KEGG: nca:Noca_3966 major facilitator transporter; major facilitator superfamily protein complement(1232188..1233444) Acidimicrobium ferrooxidans DSM 10331 8323253 YP_003109786.1 CDS Afer_1181 NC_013124.1 1233610 1235019 D PFAM: amino acid permease-associated region; KEGG: afe:Lferr_0867 amino acid permease-associated region; amino acid permease-associated protein 1233610..1235019 Acidimicrobium ferrooxidans DSM 10331 8323254 YP_003109787.1 CDS Afer_1182 NC_013124.1 1235050 1235838 R PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: mkm:Mkms_5833 4-oxalocrotonate decarboxylase; fumarylacetoacetate (FAA) hydrolase complement(1235050..1235838) Acidimicrobium ferrooxidans DSM 10331 8323255 YP_003109788.1 CDS Afer_1183 NC_013124.1 1235964 1237127 R PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: afw:Anae109_0026 hypothetical protein; UBA/THIF-type NAD/FAD binding protein complement(1235964..1237127) Acidimicrobium ferrooxidans DSM 10331 8323256 YP_003109789.1 CDS Afer_1184 NC_013124.1 1237348 1237470 D KEGG: mkm:Mkms_0862 transposase IS3/IS911 family protein; hypothetical protein 1237348..1237470 Acidimicrobium ferrooxidans DSM 10331 8323257 YP_003109790.1 CDS Afer_1185 NC_013124.1 1238279 1238782 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: rha:RHA1_ro01261 RNA polymerase sigma factor SigL; ECF subfamily RNA polymerase sigma-24 subunit 1238279..1238782 Acidimicrobium ferrooxidans DSM 10331 8323259 YP_003109791.1 CDS Afer_1186 NC_013124.1 1238769 1239431 D KEGG: art:Arth_3788 transmembrane anti- sigma factor; transmembrane anti-sigma factor 1238769..1239431 Acidimicrobium ferrooxidans DSM 10331 8323260 YP_003109792.1 CDS Afer_1187 NC_013124.1 1239535 1240038 D PFAM: Phosphoglycerate mutase; KEGG: ape:APE_2484.1 phosphohistidine phosphatase SixA; phosphohistidine phosphatase SixA 1239535..1240038 Acidimicrobium ferrooxidans DSM 10331 8323261 YP_003109793.1 CDS Afer_1188 NC_013124.1 1240048 1241637 D PFAM: Exonuclease VII large subunit; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dsh:Dshi_2727 exodeoxyribonuclease VII, large subunit; Exodeoxyribonuclease VII 1240048..1241637 Acidimicrobium ferrooxidans DSM 10331 8323262 YP_003109794.1 CDS Afer_1189 NC_013124.1 1241627 1241914 D hypothetical protein 1241627..1241914 Acidimicrobium ferrooxidans DSM 10331 8323263 YP_003109795.1 CDS Afer_1190 NC_013124.1 1241911 1243164 R PFAM: aminotransferase class-III; KEGG: sen:SACE_3329 adenosylmethionine-8-amino-7- oxononanoate transaminase; class III aminotransferase complement(1241911..1243164) Acidimicrobium ferrooxidans DSM 10331 8323264 YP_003109796.1 CDS Afer_1191 NC_013124.1 1243187 1244839 R KEGG: npu:Npun_F1553 diguanylate cyclase with PAS/PAC and GAF sensors; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; GAF domain protein; SMART: GGDEF domain containing protein; GAF sensor-containing diguanylate cyclase complement(1243187..1244839) Acidimicrobium ferrooxidans DSM 10331 8323265 YP_003109797.1 CDS Afer_1192 NC_013124.1 1244953 1246050 R PFAM: NLP/P60 protein; KEGG: ace:Acel_2144 NLP/P60 protein; NLP/P60 protein complement(1244953..1246050) Acidimicrobium ferrooxidans DSM 10331 8323266 YP_003109798.1 CDS Afer_1193 NC_013124.1 1246147 1247331 D PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: sen:SACE_1910 L-carnitine dehydratase/bile acid-inducible protein F; L-carnitine dehydratase/bile acid-inducible protein F 1246147..1247331 Acidimicrobium ferrooxidans DSM 10331 8323267 YP_003109799.1 CDS Afer_1194 NC_013124.1 1247250 1248431 R PFAM: Amidase; KEGG: bmj:BMULJ_03430 amidase; Amidase complement(1247250..1248431) Acidimicrobium ferrooxidans DSM 10331 8323268 YP_003109800.1 CDS Afer_1195 NC_013124.1 1248415 1249284 R KEGG: scl:sce0507 hypothetical protein; hypothetical protein complement(1248415..1249284) Acidimicrobium ferrooxidans DSM 10331 8323269 YP_003109801.1 CDS Afer_1196 NC_013124.1 1249484 1249954 R KEGG: csc:Csac_1200 RpiB/LacA/LacB family sugar- phosphate isomerase; TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; RpiB/LacA/LacB family sugar-phosphate isomerase complement(1249484..1249954) Acidimicrobium ferrooxidans DSM 10331 8323270 YP_003109802.1 CDS Afer_1197 NC_013124.1 1249951 1250427 R KEGG: msm:MSMEG_6365 hypothetical protein; hypothetical protein complement(1249951..1250427) Acidimicrobium ferrooxidans DSM 10331 8323271 YP_003109803.1 CDS Afer_1198 NC_013124.1 1250484 1251608 R PFAM: type I phosphodiesterase/nucleotide pyrophosphatase; PglZ domain protein; KEGG: tfu:Tfu_2126 hypothetical protein; type I phosphodiesterase/nucleotide pyrophosphatase complement(1250484..1251608) Acidimicrobium ferrooxidans DSM 10331 8323272 YP_003109804.1 CDS Afer_1199 NC_013124.1 1251921 1252376 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: abb:ABBFA_001864 rrf2 family protein (transcriptional regulator) family protein; BadM/Rrf2 family transcriptional regulator 1251921..1252376 Acidimicrobium ferrooxidans DSM 10331 8323273 YP_003109805.1 CDS Afer_1200 NC_013124.1 1252376 1254979 D PFAM: GCN5-related N-acetyltransferase; CoA-binding domain protein; KEGG: sen:SACE_1780 acetyl-CoA synthetase; GCN5-like N-acetyltransferase 1252376..1254979 Acidimicrobium ferrooxidans DSM 10331 8323274 YP_003109806.1 CDS Afer_1201 NC_013124.1 1255059 1255541 R PFAM: glutathione peroxidase; KEGG: nfa:nfa46650 glutathione peroxidase; Glutathione peroxidase complement(1255059..1255541) Acidimicrobium ferrooxidans DSM 10331 8323275 YP_003109807.1 CDS Afer_1202 NC_013124.1 1255626 1257089 R PFAM: Aldehyde Dehydrogenase; KEGG: aau:AAur_1331 succinate-semialdehyde dehydrogenase; aldehyde dehydrogenase complement(1255626..1257089) Acidimicrobium ferrooxidans DSM 10331 8323276 YP_003109808.1 CDS Afer_1203 NC_013124.1 1257214 1258827 D PFAM: protein of unknown function DUF885; KEGG: sen:SACE_1720 hypothetical protein; hypothetical protein 1257214..1258827 Acidimicrobium ferrooxidans DSM 10331 8323277 YP_003109809.1 CDS Afer_1204 NC_013124.1 1258866 1259048 R hypothetical protein complement(1258866..1259048) Acidimicrobium ferrooxidans DSM 10331 8323278 YP_003109810.1 CDS Afer_1205 NC_013124.1 1259134 1259934 R KEGG: sco:SCO4586 ABC transporter integral membrane protein; ABC transporter integral membrane protein complement(1259134..1259934) Acidimicrobium ferrooxidans DSM 10331 8323279 YP_003109811.1 CDS Afer_1206 NC_013124.1 1259924 1260832 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aau:AAur_2052 antibiotic ABC transporter, ATP-binding protein; ABC transporter-like protein complement(1259924..1260832) Acidimicrobium ferrooxidans DSM 10331 8323280 YP_003109812.1 CDS Afer_1207 NC_013124.1 1260829 1262007 R KEGG: sma:SAV_4866 hypothetical protein; hypothetical protein complement(1260829..1262007) Acidimicrobium ferrooxidans DSM 10331 8323281 YP_003109813.1 CDS Afer_1208 NC_013124.1 1262859 1263767 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 1.2; sigma-70 region 4 domain protein; KEGG: efa:EF1522 RNA polymerase sigma factor RpoD; RpoD subfamily RNA polymerase sigma-70 subunit 1262859..1263767 Acidimicrobium ferrooxidans DSM 10331 8323282 YP_003109814.1 CDS Afer_1209 NC_013124.1 1264007 1264936 R KEGG: tfu:Tfu_1123 ribosomal large subunit pseudouridine synthase D; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; RluA family pseudouridine synthase complement(1264007..1264936) Acidimicrobium ferrooxidans DSM 10331 8323283 YP_003109815.1 CDS Afer_1210 NC_013124.1 1264929 1265414 R PFAM: peptidase A8 signal peptidase II; KEGG: mgi:Mflv_3640 lipoprotein signal peptidase; peptidase A8 signal peptidase II complement(1264929..1265414) Acidimicrobium ferrooxidans DSM 10331 8323284 YP_003109816.1 CDS Afer_1211 NC_013124.1 1265462 1265881 D hypothetical protein 1265462..1265881 Acidimicrobium ferrooxidans DSM 10331 8323285 YP_003109817.1 CDS Afer_1212 NC_013124.1 1265951 1269169 D TIGRFAM: isoleucyl-tRNA synthetase; KEGG: kra:Krad_3498 isoleucyl-tRNA synthetase; isoleucyl-tRNA synthetase 1265951..1269169 Acidimicrobium ferrooxidans DSM 10331 8323286 YP_003109818.1 CDS Afer_1213 NC_013124.1 1269343 1270968 R PFAM: amino acid permease-associated region; KEGG: tac:Ta0427 L-asparagine permease related protein; amino acid permease-associated protein complement(1269343..1270968) Acidimicrobium ferrooxidans DSM 10331 8323287 YP_003109819.1 CDS Afer_1215 NC_013124.1 1272791 1273846 R KEGG: gka:GK2591 Holliday junction DNA helicase B; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; magnesium chelatase ChlI subunit; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; Holliday junction DNA helicase RuvB complement(1272791..1273846) Acidimicrobium ferrooxidans DSM 10331 8323289 YP_003109820.1 CDS Afer_1216 NC_013124.1 1273843 1274412 R KEGG: afw:Anae109_0993 Holliday junction DNA helicase RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; SMART: Helix-hairpin-helix DNA-binding class 1; Holliday junction DNA helicase RuvA complement(1273843..1274412) Acidimicrobium ferrooxidans DSM 10331 8323290 YP_003109821.1 CDS Afer_1217 NC_013124.1 1274409 1274903 R KEGG: mbn:Mboo_0111 crossover junction endodeoxyribonuclease RuvC; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC; crossover junction endodeoxyribonuclease RuvC complement(1274409..1274903) Acidimicrobium ferrooxidans DSM 10331 8323291 YP_003109822.1 CDS Afer_1218 NC_013124.1 1274896 1275357 R PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Redoxin domain protein; KEGG: fre:Franean1_6190 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen complement(1274896..1275357) Acidimicrobium ferrooxidans DSM 10331 8323292 YP_003109823.1 CDS Afer_1219 NC_013124.1 1275354 1276106 R PFAM: protein of unknown function DUF28; KEGG: gme:Gmet_0743 hypothetical protein; hypothetical protein complement(1275354..1276106) Acidimicrobium ferrooxidans DSM 10331 8323293 YP_003109824.1 CDS Afer_1220 NC_013124.1 1276153 1276791 R PFAM: SNO glutamine amidotransferase; CobB/CobQ domain protein glutamine amidotransferase; KEGG: saq:Sare_1778 SNO glutamine amidotransferase; SNO glutamine amidotransferase complement(1276153..1276791) Acidimicrobium ferrooxidans DSM 10331 8323294 YP_003109825.1 CDS Afer_1221 NC_013124.1 1276796 1277683 R with PdxT forms pyridoxal 5'-phosphate from glutamine, either ribose 5-phosphate or ribulose 5-phosphate, and either glyceraldehyde 3-phosphate or dihydroxyacetone phosphate; pyridoxal biosynthesis lyase PdxS complement(1276796..1277683) Acidimicrobium ferrooxidans DSM 10331 8323295 YP_003109826.1 CDS Afer_1222 NC_013124.1 1277754 1278539 R KEGG: saq:Sare_0473 NADH dehydrogenase (quinone); hypothetical protein complement(1277754..1278539) Acidimicrobium ferrooxidans DSM 10331 8323296 YP_003109827.1 CDS Afer_1223 NC_013124.1 1278536 1279603 R PFAM: glycosyl transferase group 1; KEGG: afw:Anae109_4290 phosphatidylinositol alpha- mannosyltransferase; group 1 glycosyl transferase complement(1278536..1279603) Acidimicrobium ferrooxidans DSM 10331 8323297 YP_003109828.1 CDS Afer_1224 NC_013124.1 1279614 1280318 R PFAM: lipid A biosynthesis acyltransferase; KEGG: tfu:Tfu_2102 lipid A biosynthesis lauroyl acyltransferase; lipid A biosynthesis acyltransferase complement(1279614..1280318) Acidimicrobium ferrooxidans DSM 10331 8323298 YP_003109829.1 CDS Afer_1225 NC_013124.1 1280514 1281248 R PFAM: CDP-alcohol phosphatidyltransferase; KEGG: saq:Sare_1773 CDP-alcohol phosphatidyltransferase; CDP-alcohol phosphatidyltransferase complement(1280514..1281248) Acidimicrobium ferrooxidans DSM 10331 8323299 YP_003109830.1 CDS Afer_1226 NC_013124.1 1281423 1283423 D KEGG: rha:RHA1_ro05886 elongation factor EF2; TIGRFAM: small GTP-binding protein; PFAM: elongation factor G domain IV; elongation factor G domain protein; Miro domain protein; GTP-binding protein HSR1-related; protein synthesis factor GTP- binding; SMART: AAA ATPase; small GTP-binding protein 1281423..1283423 Acidimicrobium ferrooxidans DSM 10331 8323300 YP_003109831.1 CDS Afer_1227 NC_013124.1 1284125 1284496 R PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: atc:AGR_C_1212 hypothetical protein; Glyoxalase/bleomycin resistance protein/dioxygenase complement(1284125..1284496) Acidimicrobium ferrooxidans DSM 10331 8323301 YP_003109832.1 CDS Afer_1228 NC_013124.1 1284902 1285393 R PFAM: histidine triad (HIT) protein; KEGG: sus:Acid_4300 histidine triad (HIT) protein; histidine triad (HIT) protein complement(1284902..1285393) Acidimicrobium ferrooxidans DSM 10331 8323302 YP_003109833.1 CDS Afer_1229 NC_013124.1 1285393 1287264 R KEGG: fal:FRAAL5168 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; Threonyl/alanyl tRNA synthetase SAD; threonyl-tRNA synthetase complement(1285393..1287264) Acidimicrobium ferrooxidans DSM 10331 8323303 YP_003109834.1 CDS Afer_1230 NC_013124.1 1287261 1288379 R PFAM: Cysteinyl-tRNA synthetase class Ia ; tRNA synthetase class I (M); KEGG: sma:SAV_6647 cysteinyl-tRNA synthetase; Cysteine--tRNA ligase complement(1287261..1288379) Acidimicrobium ferrooxidans DSM 10331 8323304 YP_003109835.1 CDS Afer_1231 NC_013124.1 1288376 1289044 R PFAM: NADP oxidoreductase coenzyme F420-dependent; KEGG: fra:Francci3_3151 reduced coenzyme F420:NADP oxidoreductase; NADP oxidoreductase coenzyme F420-dependent complement(1288376..1289044) Acidimicrobium ferrooxidans DSM 10331 8323305 YP_003109836.1 CDS Afer_1232 NC_013124.1 1289143 1289916 D Catalyzes a key regulatory step in fatty acid biosynthesis; enoyl-(acyl carrier protein) reductase 1289143..1289916 Acidimicrobium ferrooxidans DSM 10331 8323306 YP_003109837.1 CDS Afer_1233 NC_013124.1 1289985 1290752 D KEGG: predicted gene, 100039767; hypothetical protein 1289985..1290752 Acidimicrobium ferrooxidans DSM 10331 8323307 YP_003109838.1 CDS Afer_1234 NC_013124.1 1290842 1291798 R PFAM: Pirin domain protein; KEGG: ace:Acel_1948 pirin domain-containing protein; Pirin domain-containing protein complement(1290842..1291798) Acidimicrobium ferrooxidans DSM 10331 8323308 YP_003109839.1 CDS Afer_1235 NC_013124.1 1291824 1292660 R KEGG: tfu:Tfu_1956 endonuclease IV; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2; apurinic endonuclease Apn1 complement(1291824..1292660) Acidimicrobium ferrooxidans DSM 10331 8323309 YP_003109840.1 CDS Afer_1236 NC_013124.1 1292790 1293713 R PFAM: DivIVA family protein; KEGG: nfa:nfa17740 hypothetical protein; DivIVA family protein complement(1292790..1293713) Acidimicrobium ferrooxidans DSM 10331 8323310 YP_003109841.1 CDS Afer_1237 NC_013124.1 1293765 1294034 R PFAM: protein of unknown function YGGT; KEGG: azc:AZC_3317 hypothetical protein; hypothetical protein complement(1293765..1294034) Acidimicrobium ferrooxidans DSM 10331 8323311 YP_003109842.1 CDS Afer_1238 NC_013124.1 1294024 1294563 R PFAM: protein of unknown function DUF552; KEGG: rxy:Rxyl_1486 protein of unknown function DUF552; hypothetical protein complement(1294024..1294563) Acidimicrobium ferrooxidans DSM 10331 8323312 YP_003109843.1 CDS Afer_1239 NC_013124.1 1294560 1295252 R PFAM: alanine racemase domain protein; KEGG: afw:Anae109_1365 alanine racemase domain- containing protein; alanine racemase domain-containing protein complement(1294560..1295252) Acidimicrobium ferrooxidans DSM 10331 8323313 YP_003109844.1 CDS Afer_1240 NC_013124.1 1295249 1295878 R PFAM: protein of unknown function DUF152; KEGG: rxy:Rxyl_1488 protein of unknown function DUF152; hypothetical protein complement(1295249..1295878) Acidimicrobium ferrooxidans DSM 10331 8323314 YP_003109845.1 CDS Afer_1241 NC_013124.1 1295885 1296973 R TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ domain protein; KEGG: sgr:SGR_5423 cell division protein FtsZ; cell division protein FtsZ complement(1295885..1296973) Acidimicrobium ferrooxidans DSM 10331 8323315 YP_003109846.1 CDS Afer_1242 NC_013124.1 1297038 1297646 R KEGG: sen:SACE_5302 sugar transport integral membrane protein; hypothetical protein complement(1297038..1297646) Acidimicrobium ferrooxidans DSM 10331 8323316 YP_003109847.1 CDS Afer_1243 NC_013124.1 1297709 1298662 R KEGG: hmo:HM1_2061 udp-N- acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein; UDP-N-acetylenolpyruvoylglucosamine reductase complement(1297709..1298662) Acidimicrobium ferrooxidans DSM 10331 8323317 YP_003109848.1 CDS Afer_1244 NC_013124.1 1298659 1300026 R TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: pth:PTH_1860 UDP-N-acetylmuramate-alanine ligase; UDP-N-acetylmuramate/alanine ligase complement(1298659..1300026) Acidimicrobium ferrooxidans DSM 10331 8323318 YP_003109849.1 CDS Afer_1245 NC_013124.1 1300014 1301066 R PFAM: Glycosyltransferase 28 domain; glycosyl transferase family 28; KEGG: pzu:PHZ_c2323 UDP-N-acetylglucosamine--N- acetylmuramyl-(pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase; Undecaprenyldiphospho-muramoylpentapeptide beta-N -acetylglucosaminyltransferase complement(1300014..1301066) Acidimicrobium ferrooxidans DSM 10331 8323319 YP_003109850.1 CDS Afer_1246 NC_013124.1 1301063 1302202 R PFAM: cell cycle protein; KEGG: nfa:nfa17650 cell division protein; cell cycle protein complement(1301063..1302202) Acidimicrobium ferrooxidans DSM 10331 8323320 YP_003109851.1 CDS Afer_1247 NC_013124.1 1302208 1303521 R TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: pth:PTH_1863 UDP-N-acetylmuramoylalanine-D- glutamate ligase; UDP-N-acetylmuramoylalanine/D-glutamate ligase complement(1302208..1303521) Acidimicrobium ferrooxidans DSM 10331 8323321 YP_003109852.1 CDS Afer_1248 NC_013124.1 1303518 1304552 R KEGG: fal:FRAAL2193 phospho-N-acetylmuramoyl- pentapeptide-transferase; TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide-transf erase; PFAM: glycosyl transferase family 4; phospho-N-acetylmuramoyl-pentapeptide- transferase complement(1303518..1304552) Acidimicrobium ferrooxidans DSM 10331 8323322 YP_003109853.1 CDS Afer_1249 NC_013124.1 1304549 1306048 R TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: kra:Krad_3204 UDP-N-acetylmuramyl-tripeptide synthetase; UDP-N-acetylmuramyl-tripeptide synthetase complement(1304549..1306048) Acidimicrobium ferrooxidans DSM 10331 8323323 YP_003109854.1 CDS Afer_1250 NC_013124.1 1306045 1307823 R PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerization domain; KEGG: ace:Acel_1004 peptidoglycan glycosyltransferase; peptidoglycan glycosyltransferase complement(1306045..1307823) Acidimicrobium ferrooxidans DSM 10331 8323324 YP_003109855.1 CDS Afer_1251 NC_013124.1 1307816 1308244 R hypothetical protein complement(1307816..1308244) Acidimicrobium ferrooxidans DSM 10331 8323325 YP_003109856.1 CDS Afer_1252 NC_013124.1 1308226 1309185 R TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: ace:Acel_1002 S-adenosyl-methyltransferase MraW; S-adenosyl-methyltransferase MraW complement(1308226..1309185) Acidimicrobium ferrooxidans DSM 10331 8323326 YP_003109857.1 CDS Afer_1253 NC_013124.1 1309178 1309600 R PFAM: protein of unknown function UPF0040; KEGG: cth:Cthe_0982 MraZ protein; hypothetical protein complement(1309178..1309600) Acidimicrobium ferrooxidans DSM 10331 8323327 YP_003109858.1 CDS Afer_1254 NC_013124.1 1309909 1310565 R PFAM: biotin/lipoate A/B protein ligase; KEGG: cau:Caur_3882 biotin/lipoate A/B protein ligase; biotin/lipoate A/B protein ligase complement(1309909..1310565) Acidimicrobium ferrooxidans DSM 10331 8323328 YP_003109859.1 CDS Afer_1255 NC_013124.1 1310687 1310962 D PFAM: regulatory protein AsnC/Lrp family; KEGG: sma:SAV_2677 hypothetical protein; AsnC family transcriptional regulator 1310687..1310962 Acidimicrobium ferrooxidans DSM 10331 8323329 YP_003109860.1 CDS Afer_1256 NC_013124.1 1310925 1311473 R hypothetical protein complement(1310925..1311473) Acidimicrobium ferrooxidans DSM 10331 8323330 YP_003109861.1 CDS Afer_1257 NC_013124.1 1311587 1312831 D PFAM: peptidase S11 D-alanyl-D-alanine carboxypeptidase 1; KEGG: hya:HY04AAS1_1111 peptidase S11 D-alanyl-D- alanine carboxypeptidase 1; peptidase S11 D-alanyl-D-alanine carboxypeptidase 1 1311587..1312831 Acidimicrobium ferrooxidans DSM 10331 8323331 YP_003109862.1 CDS Afer_1258 NC_013124.1 1313001 1315055 R KEGG: hypothetical LOC798921; hypothetical protein complement(1313001..1315055) Acidimicrobium ferrooxidans DSM 10331 8323332 YP_003109863.1 CDS Afer_1259 NC_013124.1 1315637 1316272 R PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: nca:Noca_2059 undecaprenyl-diphosphatase; PA-phosphatase-like phosphoesterase complement(1315637..1316272) Acidimicrobium ferrooxidans DSM 10331 8323335 YP_003109864.1 CDS Afer_1260 NC_013124.1 1316365 1317249 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; sigma-70 region 3 domain protein; sigma-70 region 4 domain protein; KEGG: cau:Caur_3583 RNA polymerase sigma factor RpoD; RNA polymerase sigma-32 subunit RpoH complement(1316365..1317249) Acidimicrobium ferrooxidans DSM 10331 8323336 YP_003109865.1 CDS Afer_1261 NC_013124.1 1317246 1319012 R KEGG: fra:Francci3_1282 DNA primase; TIGRFAM: DNA primase; PFAM: zinc finger CHC2-family protein; DNA primase catalytic core domain; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein; DNA primase complement(1317246..1319012) Acidimicrobium ferrooxidans DSM 10331 8323337 YP_003109866.1 CDS Afer_1262 NC_013124.1 1319023 1321656 R catalyzes the formation of phosphoenolpyruvate from pyruvate; pyruvate phosphate dikinase complement(1319023..1321656) Acidimicrobium ferrooxidans DSM 10331 8323338 YP_003109867.1 CDS Afer_1263 NC_013124.1 1321747 1323093 R TIGRFAM: glycyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein; KEGG: deb:DehaBAV1_0713 glycyl-tRNA synthetase; glycyl-tRNA synthetase complement(1321747..1323093) Acidimicrobium ferrooxidans DSM 10331 8323339 YP_003109868.1 CDS Afer_1264 NC_013124.1 1323122 1323871 R TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: nca:Noca_1930 DNA repair protein RecO; DNA repair protein RecO complement(1323122..1323871) Acidimicrobium ferrooxidans DSM 10331 8323340 YP_003109869.1 CDS Afer_1265 NC_013124.1 1323868 1324068 R hypothetical protein complement(1323868..1324068) Acidimicrobium ferrooxidans DSM 10331 8323341 YP_003109870.1 CDS Afer_1266 NC_013124.1 1324065 1324790 R KEGG: tfu:Tfu_0853 undecaprenyl pyrophosphate synthetase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase; undecaprenyl diphosphate synthase complement(1324065..1324790) Acidimicrobium ferrooxidans DSM 10331 8323342 YP_003109871.1 CDS Afer_1267 NC_013124.1 1324801 1325256 R PFAM: Domain of unknown function DUF1794; KEGG: cef:CE1476 hypothetical protein; hypothetical protein complement(1324801..1325256) Acidimicrobium ferrooxidans DSM 10331 8323343 YP_003109872.1 CDS Afer_1268 NC_013124.1 1325322 1326185 R TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: mpo:Mpop_2233 GTP-binding protein Era; GTP-binding protein Era complement(1325322..1326185) Acidimicrobium ferrooxidans DSM 10331 8323344 YP_003109873.1 CDS Afer_1269 NC_013124.1 1326175 1327437 R PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; SMART: CBS domain containing protein; KEGG: cpf:CPF_0036 transporter; CBS domain-containing protein complement(1326175..1327437) Acidimicrobium ferrooxidans DSM 10331 8323345 YP_003109874.1 CDS Afer_1270 NC_013124.1 1327434 1327979 R PFAM: protein of unknown function UPF0054; KEGG: saq:Sare_3831 metalloprotease; hypothetical protein complement(1327434..1327979) Acidimicrobium ferrooxidans DSM 10331 8323346 YP_003109875.1 CDS Afer_1271 NC_013124.1 1327972 1328961 R PFAM: PhoH family protein; KEGG: stp:Strop_3453 PhoH family protein; PhoH family protein complement(1327972..1328961) Acidimicrobium ferrooxidans DSM 10331 8323347 YP_003109876.1 CDS Afer_1272 NC_013124.1 1329022 1329486 D KEGG: hypothetical protein; hypothetical protein 1329022..1329486 Acidimicrobium ferrooxidans DSM 10331 8323348 YP_003109877.1 CDS Afer_1273 NC_013124.1 1329546 1329785 R TIGRFAM: DNA binding domain protein, excisionase family; KEGG: hypothetical protein; excisionase family DNA binding domain-containing protein complement(1329546..1329785) Acidimicrobium ferrooxidans DSM 10331 8323349 YP_003109878.1 CDS Afer_1274 NC_013124.1 1329958 1330671 D PFAM: SAF domain protein; KEGG: aau:AAur_pTC10012 hypothetical protein; SAF domain-containing protein 1329958..1330671 Acidimicrobium ferrooxidans DSM 10331 8323350 YP_003109879.1 CDS Afer_1275 NC_013124.1 1330664 1331893 D hypothetical protein 1330664..1331893 Acidimicrobium ferrooxidans DSM 10331 8323351 YP_003109880.1 CDS Afer_1276 NC_013124.1 1331857 1332729 R PFAM: beta-lactamase domain protein; KEGG: sco:SCO3572 hydrolase; beta-lactamase domain-containing protein complement(1331857..1332729) Acidimicrobium ferrooxidans DSM 10331 8323352 YP_003109881.1 CDS Afer_1277 NC_013124.1 1332746 1333942 D PFAM: type II secretion system protein E; SMART: AAA ATPase; KEGG: kra:Krad_3789 type II secretion system protein E; type II secretion system protein E 1332746..1333942 Acidimicrobium ferrooxidans DSM 10331 8323353 YP_003109882.1 CDS Afer_1278 NC_013124.1 1333939 1334757 D KEGG: mul:MUL_4231 hypothetical protein; hypothetical protein 1333939..1334757 Acidimicrobium ferrooxidans DSM 10331 8323354 YP_003109883.1 CDS Afer_1279 NC_013124.1 1334754 1335557 D KEGG: kra:Krad_3788 type II secretion system protein; hypothetical protein 1334754..1335557 Acidimicrobium ferrooxidans DSM 10331 8323355 YP_003109884.1 CDS Afer_1281 NC_013124.1 1337417 1337689 D hypothetical protein 1337417..1337689 Acidimicrobium ferrooxidans DSM 10331 8323357 YP_003109885.1 CDS Afer_1282 NC_013124.1 1337736 1338032 D KEGG: hypothetical protein; hypothetical protein 1337736..1338032 Acidimicrobium ferrooxidans DSM 10331 8323358 YP_003109886.1 CDS Afer_1283 NC_013124.1 1338106 1338417 D hypothetical protein 1338106..1338417 Acidimicrobium ferrooxidans DSM 10331 8323359 YP_003109887.1 CDS Afer_1284 NC_013124.1 1338407 1338829 D KEGG: rso:RS05070 hemagglutinin/hemolysin- related protein; hypothetical protein 1338407..1338829 Acidimicrobium ferrooxidans DSM 10331 8323360 YP_003109888.1 CDS Afer_1285 NC_013124.1 1338839 1339708 D KEGG: fre:Franean1_3861 protein tyrosine/serine phosphatase; protein tyrosine/serine phosphatase 1338839..1339708 Acidimicrobium ferrooxidans DSM 10331 8323361 YP_003109889.1 CDS Afer_1286 NC_013124.1 1339925 1341901 D TIGRFAM: acetate/CoA ligase; PFAM: AMP-dependent synthetase and ligase; KEGG: ace:Acel_1984 acetyl-coenzyme A synthetase; acetate/CoA ligase 1339925..1341901 Acidimicrobium ferrooxidans DSM 10331 8323362 YP_003109890.1 CDS Afer_1287 NC_013124.1 1341916 1342683 D PFAM: GPR1/FUN34/yaaH family protein; KEGG: pth:PTH_2591 hypothetical protein; GPR1/FUN34/yaaH family protein 1341916..1342683 Acidimicrobium ferrooxidans DSM 10331 8323363 YP_003109891.1 CDS Afer_1288 NC_013124.1 1342658 1342963 R hypothetical protein complement(1342658..1342963) Acidimicrobium ferrooxidans DSM 10331 8323364 YP_003109892.1 CDS Afer_1289 NC_013124.1 1343204 1343464 R hypothetical protein complement(1343204..1343464) Acidimicrobium ferrooxidans DSM 10331 8323365 YP_003109893.1 CDS Afer_1290 NC_013124.1 1343475 1344566 R KEGG: ace:Acel_0781 coproporphyrinogen III oxidase, anaerobic; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB; Coproporphyrinogen dehydrogenase complement(1343475..1344566) Acidimicrobium ferrooxidans DSM 10331 8323366 YP_003109894.1 CDS Afer_1291 NC_013124.1 1344563 1345147 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: fre:Franean1_2773 XRE family transcriptional regulator; helix-turn-helix domain-containing protein complement(1344563..1345147) Acidimicrobium ferrooxidans DSM 10331 8323367 YP_003109895.1 CDS Afer_1292 NC_013124.1 1345199 1345924 R PFAM: protein of unknown function DUF558; KEGG: afw:Anae109_0268 hypothetical protein; hypothetical protein complement(1345199..1345924) Acidimicrobium ferrooxidans DSM 10331 8323368 YP_003109896.1 CDS Afer_1293 NC_013124.1 1345927 1347045 R KEGG: sth:STH505 heat shock protein, DnaJ; TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; chaperone protein DnaJ complement(1345927..1347045) Acidimicrobium ferrooxidans DSM 10331 8323369 YP_003109897.1 CDS Afer_1294 NC_013124.1 1347078 1348088 R TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: eli:ELI_06015 heat-inducible transcription repressor; heat-inducible transcription repressor HrcA complement(1347078..1348088) Acidimicrobium ferrooxidans DSM 10331 8323370 YP_003109898.1 CDS Afer_1295 NC_013124.1 1348204 1348473 R TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; KEGG: fre:Franean1_2105 ribosomal protein S20; 30S ribosomal protein S20 complement(1348204..1348473) Acidimicrobium ferrooxidans DSM 10331 8323371 YP_003109899.1 CDS Afer_1296 NC_013124.1 1348673 1350460 D TIGRFAM: GTP-binding protein LepA; small GTP- binding protein; PFAM: GTP-binding protein LepA domain protein; elongation factor G domain protein; protein synthesis factor GTP-binding; KEGG: ace:Acel_0778 GTP-binding protein LepA; GTP-binding protein LepA 1348673..1350460 Acidimicrobium ferrooxidans DSM 10331 8323372 YP_003109900.1 CDS Afer_1297 NC_013124.1 1350498 1351256 D KEGG: fre:Franean1_3800 heat shock protein 70; hypothetical protein 1350498..1351256 Acidimicrobium ferrooxidans DSM 10331 8323373 YP_003109901.1 CDS Afer_1298 NC_013124.1 1351219 1351737 R hypothetical protein complement(1351219..1351737) Acidimicrobium ferrooxidans DSM 10331 8323374 YP_003109902.1 CDS Afer_1299 NC_013124.1 1351914 1352633 R PFAM: ApbE family lipoprotein; KEGG: sma:SAV_6768 thiamine biosynthesis lipoprotein precursor; ApbE family lipoprotein complement(1351914..1352633) Acidimicrobium ferrooxidans DSM 10331 8323375 YP_003109903.1 CDS Afer_1300 NC_013124.1 1352630 1353097 R PFAM: FMN-binding domain protein; KEGG: ace:Acel_0050 FMN-binding domain-containing protein; FMN-binding domain-containing protein complement(1352630..1353097) Acidimicrobium ferrooxidans DSM 10331 8323376 YP_003109904.1 CDS Afer_1301 NC_013124.1 1353107 1354450 R PFAM: Ferric reductase domain protein transmembrane component domain; FAD-binding 8 domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sma:SAV_2194 oxidoreductase; ferric reductase domain-containing protein transmembrane component complement(1353107..1354450) Acidimicrobium ferrooxidans DSM 10331 8323377 YP_003109905.1 CDS Afer_1302 NC_013124.1 1354539 1355909 D PFAM: DNA photolyase FAD-binding; KEGG: fal:FRAAL0101 deoxyribodipyrimidine photo- lyase; deoxyribodipyrimidine photo-lyase 1354539..1355909 Acidimicrobium ferrooxidans DSM 10331 8323378 YP_003109906.1 CDS Afer_1303 NC_013124.1 1355809 1356816 R KEGG: rha:RHA1_ro01286 DNA polymerase III delta subunit; DNA polymerase III delta subunit-like protein complement(1355809..1356816) Acidimicrobium ferrooxidans DSM 10331 8323379 YP_003109907.1 CDS Afer_1304 NC_013124.1 1356819 1357664 R KEGG: ace:Acel_1839 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(1356819..1357664) Acidimicrobium ferrooxidans DSM 10331 8323380 YP_003109908.1 CDS Afer_1305 NC_013124.1 1357667 1358374 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: cau:Caur_0205 thioredoxin domain-containing protein; thioredoxin complement(1357667..1358374) Acidimicrobium ferrooxidans DSM 10331 8323381 YP_003109909.1 CDS Afer_1306 NC_013124.1 1358450 1359313 D PFAM: aldo/keto reductase; KEGG: nca:Noca_0658 aldo/keto reductase; aldo/keto reductase 1358450..1359313 Acidimicrobium ferrooxidans DSM 10331 8323382 YP_003109910.1 CDS Afer_1307 NC_013124.1 1359310 1360089 D PFAM: alpha/beta hydrolase fold; KEGG: met:M446_4655 3-oxoadipate enol-lactonase; alpha/beta hydrolase fold protein 1359310..1360089 Acidimicrobium ferrooxidans DSM 10331 8323383 YP_003109911.1 CDS Afer_1308 NC_013124.1 1360086 1360790 R KEGG: kra:Krad_3260 leucyl/phenylalanyl-tRNA-- protein transferase; TIGRFAM: leucyl/phenylalanyl-tRNA/protein transferase; PFAM: leucyl/phenylalanyl-tRNA--protein transferase; leucyl/phenylalanyl-tRNA/protein transferase complement(1360086..1360790) Acidimicrobium ferrooxidans DSM 10331 8323384 YP_003109912.1 CDS Afer_1309 NC_013124.1 1360801 1361451 R KEGG: mva:Mvan_4367 pyridoxamine 5'-phosphate oxidase-related, FMN-binding; pyridoxamine 5'-phosphate oxidase-like FMN- binding protein complement(1360801..1361451) Acidimicrobium ferrooxidans DSM 10331 8323385 YP_003109913.1 CDS Afer_1310 NC_013124.1 1361495 1362241 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sma:SAV_5911 ABC transporter ATP-binding protein; ABC transporter-like protein complement(1361495..1362241) Acidimicrobium ferrooxidans DSM 10331 8323386 YP_003109914.1 CDS Afer_1311 NC_013124.1 1362271 1363677 R PFAM: protein of unknown function DUF214; KEGG: lxx:Lxx03110 integral membrane protein; hypothetical protein complement(1362271..1363677) Acidimicrobium ferrooxidans DSM 10331 8323387 YP_003109915.1 CDS Afer_1314 NC_013124.1 1366433 1367374 D KEGG: ank:AnaeK_3975 restriction endonuclease-like protein; restriction endonuclease-like protein 1366433..1367374 Acidimicrobium ferrooxidans DSM 10331 8323391 YP_003109916.1 CDS Afer_1315 NC_013124.1 1367396 1367725 D PFAM: transposase IS3/IS911 family protein; KEGG: rxy:Rxyl_1861 transposase IS3/IS911; transposase IS3/IS911 family protein 1367396..1367725 Acidimicrobium ferrooxidans DSM 10331 8323392 YP_003109917.1 CDS Afer_1316 NC_013124.1 1367722 1368600 D PFAM: Integrase catalytic region; KEGG: amr:AM1_A0193 integrase, catalytic region; integrase catalytic subunit 1367722..1368600 Acidimicrobium ferrooxidans DSM 10331 8323393 YP_003109918.1 CDS Afer_1319 NC_013124.1 1369292 1370170 R PFAM: Integrase catalytic region; KEGG: rha:RHA1_ro11026 transposase; integrase catalytic subunit complement(1369292..1370170) Acidimicrobium ferrooxidans DSM 10331 8323396 YP_003109919.1 CDS Afer_1320 NC_013124.1 1370167 1370496 R PFAM: transposase IS3/IS911 family protein; KEGG: rxy:Rxyl_2226 transposase IS3/IS911; transposase IS3/IS911 family protein complement(1370167..1370496) Acidimicrobium ferrooxidans DSM 10331 8323397 YP_003109920.1 CDS Afer_1321 NC_013124.1 1371434 1372252 R KEGG: fre:Franean1_5518 integrase family protein; integrase family protein complement(1371434..1372252) Acidimicrobium ferrooxidans DSM 10331 8323398 YP_003109921.1 CDS Afer_1322 NC_013124.1 1372485 1374932 D TIGRFAM: leucyl-tRNA synthetase; KEGG: dau:Daud_1865 leucyl-tRNA synthetase; leucyl-tRNA synthetase 1372485..1374932 Acidimicrobium ferrooxidans DSM 10331 8323400 YP_003109922.1 CDS Afer_1323 NC_013124.1 1375029 1376555 D PFAM: transposase IS4 family protein; KEGG: mva:Mvan_4071 transposase, IS4 family protein; transposase IS4 family protein 1375029..1376555 Acidimicrobium ferrooxidans DSM 10331 8323401 YP_003109923.1 CDS Afer_1324 NC_013124.1 1377379 1378044 R PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: sco:SCO2328 dipeptidase; peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin complement(1377379..1378044) Acidimicrobium ferrooxidans DSM 10331 8323403 YP_003109924.1 CDS Afer_1325 NC_013124.1 1378106 1379500 R PFAM: amino acid permease-associated region; KEGG: mmi:MMAR_2052 amino acid transporter; amino acid permease-associated protein complement(1378106..1379500) Acidimicrobium ferrooxidans DSM 10331 8323404 YP_003109925.1 CDS Afer_1326 NC_013124.1 1379635 1380429 D PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: msm:MSMEG_2682 transcriptional regulator; GntR family transcriptional regulator 1379635..1380429 Acidimicrobium ferrooxidans DSM 10331 8323405 YP_003109926.1 CDS Afer_1327 NC_013124.1 1380597 1381763 R PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tfu:Tfu_1763 ABC-type sugar transport systems ATPase components; ABC transporter-like protein complement(1380597..1381763) Acidimicrobium ferrooxidans DSM 10331 8323406 YP_003109927.1 CDS Afer_1328 NC_013124.1 1381772 1383412 R PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; KEGG: bra:BRADO0511 alpha-glucosidase; alpha amylase catalytic subunit complement(1381772..1383412) Acidimicrobium ferrooxidans DSM 10331 8323407 YP_003109928.1 CDS Afer_1329 NC_013124.1 1383428 1384267 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_6264 multiple sugar transport system permease protein; binding-protein-dependent transport systems inner membrane component complement(1383428..1384267) Acidimicrobium ferrooxidans DSM 10331 8323408 YP_003109929.1 CDS Afer_1330 NC_013124.1 1384267 1385217 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sen:SACE_6263 ABC sugar transporter, permease component; binding-protein-dependent transport systems inner membrane component complement(1384267..1385217) Acidimicrobium ferrooxidans DSM 10331 8323409 YP_003109930.1 CDS Afer_1331 NC_013124.1 1385356 1386750 R PFAM: extracellular solute-binding protein family 1; KEGG: sen:SACE_6262 ABC transporter substrate-binding protein; family 1 extracellular solute-binding protein complement(1385356..1386750) Acidimicrobium ferrooxidans DSM 10331 8323410 YP_003109931.1 CDS Afer_1332 NC_013124.1 1386814 1387947 R KEGG: nca:Noca_3918 LacI family transcription regulator; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; LacI family transcriptional regulator complement(1386814..1387947) Acidimicrobium ferrooxidans DSM 10331 8323411 YP_003109932.1 CDS Afer_1333 NC_013124.1 1388637 1389095 R KEGG: glo:Glov_2391 drug resistance transporter, EmrB/QacA subfamily; hypothetical protein complement(1388637..1389095) Acidimicrobium ferrooxidans DSM 10331 8323412 YP_003109933.1 CDS Afer_1334 NC_013124.1 1389178 1390185 D KEGG: rso:RSc1428 hypothetical protein; hypothetical protein 1389178..1390185 Acidimicrobium ferrooxidans DSM 10331 8323413 YP_003109934.1 CDS Afer_1335 NC_013124.1 1390837 1391454 R TIGRFAM: serine O-acetyltransferase; KEGG: mmi:MMAR_3646 serine acetyltransferase CysE; serine O-acetyltransferase complement(1390837..1391454) Acidimicrobium ferrooxidans DSM 10331 8323415 YP_003109935.1 CDS Afer_1336 NC_013124.1 1391454 1392389 R TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: fal:FRAAL3350 subunit of cysteine synthase A and O-acetylserine sulfhydrolase A, PLP-dependent enzyme; cysteine synthase A complement(1391454..1392389) Acidimicrobium ferrooxidans DSM 10331 8323416 YP_003109936.1 CDS Afer_1337 NC_013124.1 1392480 1393364 R PFAM: HhH-GPD family protein; SMART: HhH-GPD family protein; KEGG: mjl:Mjls_5132 HhH-GPD family protein; HhH-GPD family protein complement(1392480..1393364) Acidimicrobium ferrooxidans DSM 10331 8323417 YP_003109937.1 CDS Afer_1338 NC_013124.1 1393608 1394300 D SMART: regulatory protein ArsR; KEGG: stp:Strop_2302 regulatory protein, ArsR; transcriptional regulator 1393608..1394300 Acidimicrobium ferrooxidans DSM 10331 8323418 YP_003109938.1 CDS Afer_1339 NC_013124.1 1394297 1395586 D PFAM: major facilitator superfamily MFS_1; KEGG: stp:Strop_2289 major facilitator transporter; major facilitator superfamily protein 1394297..1395586 Acidimicrobium ferrooxidans DSM 10331 8323419 YP_003109939.1 CDS Afer_1340 NC_013124.1 1395785 1396729 R KEGG: MUC17; mucin 17, cell surface associated; hypothetical protein complement(1395785..1396729) Acidimicrobium ferrooxidans DSM 10331 8323420 YP_003109940.1 CDS Afer_1341 NC_013124.1 1397197 1397580 R PFAM: protein of unknown function DUF86; KEGG: mla:Mlab_0885 hypothetical protein; hypothetical protein complement(1397197..1397580) Acidimicrobium ferrooxidans DSM 10331 8323421 YP_003109941.1 CDS Afer_1342 NC_013124.1 1397549 1397884 R PFAM: DNA polymerase beta domain protein region; KEGG: rca:Rcas_2416 DNA polymerase beta subunit; DNA polymerase beta domain-containing protein complement(1397549..1397884) Acidimicrobium ferrooxidans DSM 10331 8323422 YP_003109942.1 CDS Afer_1343 NC_013124.1 1398363 1399463 R PFAM: chemotaxis sensory transducer; SMART: chemotaxis sensory transducer; KEGG: glo:Glov_1832 methyl-accepting chemotaxis sensory transducer; methyl-accepting chemotaxis sensory transducer complement(1398363..1399463) Acidimicrobium ferrooxidans DSM 10331 8323424 YP_003109943.1 CDS Afer_1344 NC_013124.1 1399614 1400549 R PFAM: beta-lactamase domain protein; KEGG: sma:SAV_6616 polyketide cyclase; beta-lactamase domain-containing protein complement(1399614..1400549) Acidimicrobium ferrooxidans DSM 10331 8323425 YP_003109944.1 CDS Afer_1345 NC_013124.1 1400539 1400736 R hypothetical protein complement(1400539..1400736) Acidimicrobium ferrooxidans DSM 10331 8323426 YP_003109945.1 CDS Afer_1346 NC_013124.1 1400775 1402301 R PFAM: carboxyl transferase; KEGG: saq:Sare_0033 propionyl-CoA carboxylase; Propionyl-CoA carboxylase complement(1400775..1402301) Acidimicrobium ferrooxidans DSM 10331 8323427 YP_003109946.1 CDS Afer_1347 NC_013124.1 1402317 1403606 R TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Miro domain protein; KEGG: ace:Acel_1233 small GTP-binding protein; small GTP-binding protein complement(1402317..1403606) Acidimicrobium ferrooxidans DSM 10331 8323428 YP_003109947.1 CDS Afer_1348 NC_013124.1 1403603 1404955 R PFAM: protein of unknown function DUF512; KEGG: syw:SYNW2188 Fe-S oxidoreductase; hypothetical protein complement(1403603..1404955) Acidimicrobium ferrooxidans DSM 10331 8323429 YP_003109948.1 CDS Afer_1349 NC_013124.1 1405015 1406049 D KEGG: ace:Acel_1858 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; hydroxymethylbutenyl pyrophosphate reductase 1405015..1406049 Acidimicrobium ferrooxidans DSM 10331 8323430 YP_003109949.1 CDS Afer_1350 NC_013124.1 1406073 1406840 R PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: syn:sll1848 1-acyl-sn-glycerol-3- phosphate acyltransferase; phospholipid/glycerol acyltransferase complement(1406073..1406840) Acidimicrobium ferrooxidans DSM 10331 8323431 YP_003109950.1 CDS Afer_1351 NC_013124.1 1406837 1407439 R PFAM: cytidylate kinase region; KEGG: mul:MUL_3233 cytidylate kinase; cytidylate kinase complement(1406837..1407439) Acidimicrobium ferrooxidans DSM 10331 8323432 YP_003109951.1 CDS Afer_1352 NC_013124.1 1407631 1408584 D metalloprotease; heat shock protein HtpX 1407631..1408584 Acidimicrobium ferrooxidans DSM 10331 8323433 YP_003109952.1 CDS Afer_1353 NC_013124.1 1408587 1409192 D KEGG: ace:Acel_0953 hypothetical protein; hypothetical protein 1408587..1409192 Acidimicrobium ferrooxidans DSM 10331 8323434 YP_003109953.1 CDS Afer_1354 NC_013124.1 1409189 1410493 R KEGG: syr:SynRCC307_1150 3-phosphoshikimate 1- carboxyvinyltransferase; TIGRFAM: 3-phosphoshikimate 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); 3-phosphoshikimate 1-carboxyvinyltransferase complement(1409189..1410493) Acidimicrobium ferrooxidans DSM 10331 8323435 YP_003109954.1 CDS Afer_1355 NC_013124.1 1410503 1410865 R TIGRFAM: chorismate mutase; PFAM: Chorismate mutase of the AroH class; KEGG: nca:Noca_2499 chorismate mutase; chorismate mutase complement(1410503..1410865) Acidimicrobium ferrooxidans DSM 10331 8323436 YP_003109955.1 CDS Afer_1356 NC_013124.1 1410828 1411592 R PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: krh:KRH_15230 pseudouridine synthase; pseudouridine synthase complement(1410828..1411592) Acidimicrobium ferrooxidans DSM 10331 8323437 YP_003109956.1 CDS Afer_1357 NC_013124.1 1411589 1412155 R PFAM: chromosome segregation and condensation protein ScpB; KEGG: ace:Acel_1237 condensin subunit ScpB; chromosome segregation and condensation protein ScpB complement(1411589..1412155) Acidimicrobium ferrooxidans DSM 10331 8323438 YP_003109957.1 CDS Afer_1358 NC_013124.1 1412148 1412843 R KEGG: cmi:CMM_1979 hypothetical protein; hypothetical protein complement(1412148..1412843) Acidimicrobium ferrooxidans DSM 10331 8323439 YP_003109958.1 CDS Afer_1359 NC_013124.1 1412821 1413324 R PFAM: GCN5-related N-acetyltransferase; KEGG: mxa:MXAN_3222 acetyltransferase, GNAT family; GCN5-like N-acetyltransferase complement(1412821..1413324) Acidimicrobium ferrooxidans DSM 10331 8323440 YP_003109959.1 CDS Afer_1360 NC_013124.1 1413377 1414636 R PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ank:AnaeK_2951 protein of unknown function DUF224 cysteine-rich region domain protein; hypothetical protein complement(1413377..1414636) Acidimicrobium ferrooxidans DSM 10331 8323441 YP_003109960.1 CDS Afer_1361 NC_013124.1 1414633 1415724 R PFAM: FAD linked oxidase domain protein; KEGG: cyb:CYB_2695 FAD-binding protein; FAD linked oxidase domain-containing protein complement(1414633..1415724) Acidimicrobium ferrooxidans DSM 10331 8323442 YP_003109961.1 CDS Afer_1362 NC_013124.1 1415718 1417184 R PFAM: FAD linked oxidase domain protein; KEGG: sen:SACE_6366 glycolate oxidase subunit; FAD linked oxidase domain-containing protein complement(1415718..1417184) Acidimicrobium ferrooxidans DSM 10331 8323443 YP_003109962.1 CDS Afer_1363 NC_013124.1 1417237 1417989 D PFAM: short-chain dehydrogenase/reductase SDR; NAD- dependent epimerase/dehydratase; KEGG: afw:Anae109_1109 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1417237..1417989 Acidimicrobium ferrooxidans DSM 10331 8323444 YP_003109963.1 CDS Afer_1364 NC_013124.1 1418126 1419160 D PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: pac:PPA0955 deoxyguanosinetriphosphate triphosphohydrolase; metal-dependent phosphohydrolase HD subdomain-containing protein 1418126..1419160 Acidimicrobium ferrooxidans DSM 10331 8323445 YP_003109964.1 CDS Afer_1365 NC_013124.1 1419197 1419748 D PFAM: transcriptional regulator PadR family protein; KEGG: sgr:SGR_6165 PadR-like family transcriptional regulator; PadR family transcriptional regulator 1419197..1419748 Acidimicrobium ferrooxidans DSM 10331 8323446 YP_003109965.1 CDS Afer_1366 NC_013124.1 1419836 1420177 R PFAM: protein of unknown function DUF1291; KEGG: sto:ST0089 hypothetical protein; hypothetical protein complement(1419836..1420177) Acidimicrobium ferrooxidans DSM 10331 8323447 YP_003109966.1 CDS Afer_1367 NC_013124.1 1420430 1421938 D PFAM: AMP-dependent synthetase and ligase; KEGG: abo:ABO_0184 long-chain-fatty-acid-CoA ligase; AMP-dependent synthetase and ligase 1420430..1421938 Acidimicrobium ferrooxidans DSM 10331 8323448 YP_003109967.1 CDS Afer_1368 NC_013124.1 1422011 1422334 D PFAM: protein of unknown function DUF74; KEGG: mmi:MMAR_5292 hypothetical protein; hypothetical protein 1422011..1422334 Acidimicrobium ferrooxidans DSM 10331 8323449 YP_003109968.1 CDS Afer_1369 NC_013124.1 1422417 1422665 R KEGG: nfa:pnf2670 hypothetical protein; hypothetical protein complement(1422417..1422665) Acidimicrobium ferrooxidans DSM 10331 8323450 YP_003109969.1 CDS Afer_1370 NC_013124.1 1422819 1424018 R TIGRFAM: acetyl-CoA acetyltransferase; PFAM: Thiolase; KEGG: stp:Strop_1359 beta-ketoadipyl CoA thiolase; acetyl-CoA acetyltransferase complement(1422819..1424018) Acidimicrobium ferrooxidans DSM 10331 8323451 YP_003109970.1 CDS Afer_1371 NC_013124.1 1424015 1424452 R TIGRFAM: phenylacetic acid degradation protein PaaD; PFAM: thioesterase superfamily protein; KEGG: pde:Pden_4800 phenylacetic acid degradation protein PaaD; phenylacetic acid degradation protein PaaD complement(1424015..1424452) Acidimicrobium ferrooxidans DSM 10331 8323452 YP_003109971.1 CDS Afer_1372 NC_013124.1 1424449 1425081 R PFAM: regulatory protein TetR; KEGG: lch:Lcho_2402 TetR family transcriptional regulator; TetR family transcriptional regulator complement(1424449..1425081) Acidimicrobium ferrooxidans DSM 10331 8323453 YP_003109972.1 CDS Afer_1373 NC_013124.1 1425078 1425878 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: krh:KRH_02100 enoyl-CoA hydratase PaaG; enoyl-CoA hydratase/isomerase complement(1425078..1425878) Acidimicrobium ferrooxidans DSM 10331 8323454 YP_003109973.1 CDS Afer_1374 NC_013124.1 1425884 1426672 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: stp:Strop_0164 enoyl-CoA hydratase/isomerase; enoyl-CoA hydratase/isomerase complement(1425884..1426672) Acidimicrobium ferrooxidans DSM 10331 8323455 YP_003109974.1 CDS Afer_1375 NC_013124.1 1426666 1427532 R PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: ace:Acel_0147 3-hydroxyacyl-CoA dehydrogenase; NAD-binding 3-hydroxyacyl-CoA dehydrogenase complement(1426666..1427532) Acidimicrobium ferrooxidans DSM 10331 8323456 YP_003109975.1 CDS Afer_1376 NC_013124.1 1427505 1428512 R KEGG: dar:Daro_0369 hypothetical protein; hypothetical protein complement(1427505..1428512) Acidimicrobium ferrooxidans DSM 10331 8323457 YP_003109976.1 CDS Afer_1377 NC_013124.1 1428619 1429653 D PFAM: ferredoxin; Oxidoreductase FAD-binding domain protein; oxidoreductase FAD/NAD(P)-binding domain protein; KEGG: dar:Daro_0368 ferredoxin:oxidoreductase FAD/NAD(P)-binding:oxidoreductase FAD-binding region; ferredoxin 1428619..1429653 Acidimicrobium ferrooxidans DSM 10331 8323458 YP_003109977.1 CDS Afer_1378 NC_013124.1 1429676 1432603 D PFAM: Aldehyde Dehydrogenase; Proline dehydrogenase; KEGG: ote:Oter_0715 aldehyde dehydrogenase; aldehyde dehydrogenase 1429676..1432603 Acidimicrobium ferrooxidans DSM 10331 8323459 YP_003109978.1 CDS Afer_1379 NC_013124.1 1432739 1434055 D PFAM: major facilitator superfamily MFS_1; KEGG: ade:Adeh_3709 major facilitator transporter; major facilitator superfamily protein 1432739..1434055 Acidimicrobium ferrooxidans DSM 10331 8323460 YP_003109979.1 CDS Afer_1380 NC_013124.1 1434355 1435503 D KEGG: msm:MSMEG_6524 ABC polyamine/opine/phosphonate transporter, periplasmic ligand binding protein; ABC polyamine/opine/phosphonate transporter, periplasmic ligand binding protein 1434355..1435503 Acidimicrobium ferrooxidans DSM 10331 8323461 YP_003109980.1 CDS Afer_1381 NC_013124.1 1435488 1436390 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: acr:Acry_0983 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1435488..1436390 Acidimicrobium ferrooxidans DSM 10331 8323462 YP_003109981.1 CDS Afer_1382 NC_013124.1 1436387 1437166 D PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpy:Bphyt_0516 binding-protein-dependent transport systems inner membrane component; binding-protein-dependent transport systems inner membrane component 1436387..1437166 Acidimicrobium ferrooxidans DSM 10331 8323463 YP_003109982.1 CDS Afer_1383 NC_013124.1 1437175 1438281 D PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: mva:Mvan_5739 ABC transporter-related protein; ABC transporter-like protein 1437175..1438281 Acidimicrobium ferrooxidans DSM 10331 8323464 YP_003109983.1 CDS Afer_1384 NC_013124.1 1438278 1439918 D PFAM: metallophosphoesterase; KEGG: nca:Noca_3235 metallophosphoesterase; metallophosphoesterase 1438278..1439918 Acidimicrobium ferrooxidans DSM 10331 8323465 YP_003109984.1 CDS Afer_1385 NC_013124.1 1439915 1442722 R KEGG: afe:Lferr_1405 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase complement(1439915..1442722) Acidimicrobium ferrooxidans DSM 10331 8323466 YP_003109985.1 CDS Afer_1386 NC_013124.1 1443317 1443865 D KEGG: predicted gene, 100039767; hypothetical protein 1443317..1443865 Acidimicrobium ferrooxidans DSM 10331 8323468 YP_003109986.1 CDS Afer_1387 NC_013124.1 1444024 1445550 R PFAM: transposase IS4 family protein; KEGG: mva:Mvan_4071 transposase, IS4 family protein; transposase IS4 family protein complement(1444024..1445550) Acidimicrobium ferrooxidans DSM 10331 8323469 YP_003109987.1 CDS Afer_1388 NC_013124.1 1445636 1446256 R KEGG: nfa:nfa2450 hypothetical protein; hypothetical protein complement(1445636..1446256) Acidimicrobium ferrooxidans DSM 10331 8323470 YP_003109988.1 CDS Afer_1390 NC_013124.1 1447912 1448160 D hypothetical protein 1447912..1448160 Acidimicrobium ferrooxidans DSM 10331 8323472 YP_003109989.1 CDS Afer_1391 NC_013124.1 1448275 1448463 R hypothetical protein complement(1448275..1448463) Acidimicrobium ferrooxidans DSM 10331 8323473 YP_003109990.1 CDS Afer_1393 NC_013124.1 1449743 1452724 R PFAM: type III restriction protein res subunit; KEGG: cte:CT0911 type III restriction system endonuclease; type III restriction protein res subunit complement(1449743..1452724) Acidimicrobium ferrooxidans DSM 10331 8323475 YP_003109991.1 CDS Afer_1394 NC_013124.1 1452724 1454679 R PFAM: DNA methylase N-4/N-6 domain protein; KEGG: bpt:Bpet4236 type III restriction system methylase; DNA methylase N-4/N-6 domain-containing protein complement(1452724..1454679) Acidimicrobium ferrooxidans DSM 10331 8323476 YP_003109992.1 CDS Afer_1395 NC_013124.1 1454691 1455449 R KEGG: pph:Ppha_1127 hypothetical protein; hypothetical protein complement(1454691..1455449) Acidimicrobium ferrooxidans DSM 10331 8323477 YP_003109993.1 CDS Afer_1396 NC_013124.1 1455446 1458643 R PFAM: helicase domain protein; SNF2-related protein; SMART: helicase domain protein; DEAD-like helicases; KEGG: cte:CT0906 DNA-dependent ATPase, SNF2 family protein; helicase domain-containing protein complement(1455446..1458643) Acidimicrobium ferrooxidans DSM 10331 8323478 YP_003109994.1 CDS Afer_1397 NC_013124.1 1458651 1459880 R hypothetical protein complement(1458651..1459880) Acidimicrobium ferrooxidans DSM 10331 8323479 YP_003109995.1 CDS Afer_1398 NC_013124.1 1460181 1460696 R PFAM: GETHR pentapeptide repeat-containing protein; KEGG: fal:FRAAL3726 pentapeptide repeat-containing protein; GETHR pentapeptide repeat-containing protein complement(1460181..1460696) Acidimicrobium ferrooxidans DSM 10331 8323480 YP_003109996.1 CDS Afer_1399 NC_013124.1 1460962 1462488 R PFAM: transposase IS4 family protein; KEGG: mva:Mvan_4071 transposase, IS4 family protein; transposase IS4 family protein complement(1460962..1462488) Acidimicrobium ferrooxidans DSM 10331 8323481 YP_003109997.1 CDS Afer_1400 NC_013124.1 1462585 1463679 R KEGG: ace:Acel_1702 secreted protein; hypothetical protein complement(1462585..1463679) Acidimicrobium ferrooxidans DSM 10331 8323482 YP_003109998.1 CDS Afer_1401 NC_013124.1 1463720 1464679 R PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: azo:azo1486 conserved hypothetical signaling protein; diguanylate phosphodiesterase complement(1463720..1464679) Acidimicrobium ferrooxidans DSM 10331 8323483 YP_003109999.1 CDS Afer_1402 NC_013124.1 1464676 1465794 R PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: fal:FRAAL5844 hypothetical protein; diguanylate phosphodiesterase complement(1464676..1465794) Acidimicrobium ferrooxidans DSM 10331 8323484 YP_003110000.1 CDS Afer_1403 NC_013124.1 1466256 1466705 D KEGG: cma:Cmaq_0484 hypothetical protein; hypothetical protein 1466256..1466705 Acidimicrobium ferrooxidans DSM 10331 8323485 YP_003110001.1 CDS Afer_1404 NC_013124.1 1466762 1467019 D KEGG: kcr:Kcr_1535 SirA family protein; SirA family protein 1466762..1467019 Acidimicrobium ferrooxidans DSM 10331 8323486 YP_003110002.1 CDS Afer_1405 NC_013124.1 1467021 1468199 D PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cma:Cmaq_0486 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase 1467021..1468199 Acidimicrobium ferrooxidans DSM 10331 8323487 YP_003110003.1 CDS Afer_1406 NC_013124.1 1468240 1468497 R hypothetical protein complement(1468240..1468497) Acidimicrobium ferrooxidans DSM 10331 8323488 YP_003110004.1 CDS Afer_1407 NC_013124.1 1469510 1469899 R PFAM: protein of unknown function DUF488; KEGG: afe:Lferr_0982 protein of unknown function DUF488; hypothetical protein complement(1469510..1469899) Acidimicrobium ferrooxidans DSM 10331 8323490 YP_003110005.1 CDS Afer_1408 NC_013124.1 1469921 1472188 R Catalyzes the conversion of citrate to isocitrate; aconitate hydratase complement(1469921..1472188) Acidimicrobium ferrooxidans DSM 10331 8323491 YP_003110006.1 CDS Afer_1409 NC_013124.1 1472262 1473020 D PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: sgr:SGR_1276 GntR family transcriptional regulator; GntR family transcriptional regulator 1472262..1473020 Acidimicrobium ferrooxidans DSM 10331 8323492 YP_003110007.1 CDS Afer_1410 NC_013124.1 1473106 1474482 D PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: acr:Acry_2484 permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease 1473106..1474482 Acidimicrobium ferrooxidans DSM 10331 8323493 YP_003110008.1 CDS Afer_1411 NC_013124.1 1474479 1475327 D PFAM: helix-turn-helix protein RpiR; sugar isomerase (SIS); KEGG: rxy:Rxyl_0574 RpiR family transcriptional regulator; RpiR family transcriptional regulator 1474479..1475327 Acidimicrobium ferrooxidans DSM 10331 8323494 YP_003110009.1 CDS Afer_1412 NC_013124.1 1475324 1476505 D allantoate amidohydrolase and N-carbamoyl-L-amino acid amidohydrolase are very similar; the allantoate amidohydrolase from Escherichia coli forms a dimer and binds zinc ions for catalytic activity and catalyzes the conversion of allantoate to (S)-ureidoglycolate and ammonia; carbamoyl amidohydrolase from Bacillus sp. converts N-carbamoyl amino acids to amino acids, ammonia, and carbon dioxide; allantoate amidohydrolase 1475324..1476505 Acidimicrobium ferrooxidans DSM 10331 8323495 YP_003110010.1 CDS Afer_1413 NC_013124.1 1476502 1477812 D PFAM: amidohydrolase; KEGG: kra:Krad_4451 N-formimino-L-glutamate deiminase; amidohydrolase 1476502..1477812 Acidimicrobium ferrooxidans DSM 10331 8323496 YP_003110011.1 CDS Afer_1414 NC_013124.1 1477809 1479467 D catalyzes the formation of 4-imidazolone-5-propanoate from urocanate during histidine metabolism; urocanate hydratase 1477809..1479467 Acidimicrobium ferrooxidans DSM 10331 8323497 YP_003110012.1 CDS Afer_1415 NC_013124.1 1479455 1480654 D KEGG: mmr:Mmar10_1604 imidazolonepropionase; TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; Amidohydrolase 3; imidazolonepropionase 1479455..1480654 Acidimicrobium ferrooxidans DSM 10331 8323498 YP_003110013.1 CDS Afer_1416 NC_013124.1 1480972 1481496 R TIGRFAM: phage tail protein; KEGG: fre:Franean1_3826 phage tail protein; phage tail protein complement(1480972..1481496) Acidimicrobium ferrooxidans DSM 10331 8323499 YP_003110014.1 CDS Afer_1417 NC_013124.1 1481505 1483457 R KEGG: sco:SCO4244 hypothetical protein; hypothetical protein complement(1481505..1483457) Acidimicrobium ferrooxidans DSM 10331 8323500 YP_003110015.1 CDS Afer_1418 NC_013124.1 1483457 1483894 R PFAM: GPW/gp25 family protein; KEGG: sgr:SGR_2075 hypothetical protein; GPW/gp25 family protein complement(1483457..1483894) Acidimicrobium ferrooxidans DSM 10331 8323501 YP_003110016.1 CDS Afer_1419 NC_013124.1 1483925 1486573 R KEGG: ade:Adeh_0244 LigA; hypothetical protein complement(1483925..1486573) Acidimicrobium ferrooxidans DSM 10331 8323502 YP_003110017.1 CDS Afer_1420 NC_013124.1 1486570 1487046 R TIGRFAM: conserved hypothetical protein; KEGG: gsu:GSU0979 hypothetical protein; hypothetical protein complement(1486570..1487046) Acidimicrobium ferrooxidans DSM 10331 8323503 YP_003110018.1 CDS Afer_1421 NC_013124.1 1487043 1487216 R KEGG: mlo:msr6553 hypothetical protein; hypothetical protein complement(1487043..1487216) Acidimicrobium ferrooxidans DSM 10331 8323504 YP_003110019.1 CDS Afer_1422 NC_013124.1 1487213 1487686 R KEGG: fre:Franean1_3818 secreted protein; hypothetical protein complement(1487213..1487686) Acidimicrobium ferrooxidans DSM 10331 8323505 YP_003110020.1 CDS Afer_1423 NC_013124.1 1487690 1488172 R TIGRFAM: conserved hypothetical protein; KEGG: fre:Franean1_3817 phage tail protein; hypothetical protein complement(1487690..1488172) Acidimicrobium ferrooxidans DSM 10331 8323506 YP_003110021.1 CDS Afer_1424 NC_013124.1 1488188 1489756 R PFAM: tail sheath protein; KEGG: fre:Franean1_3816 tail sheath protein; tail sheath protein complement(1488188..1489756) Acidimicrobium ferrooxidans DSM 10331 8323507 YP_003110022.1 CDS Afer_1425 NC_013124.1 1490131 1490511 D KEGG: mbb:BCG_0973 resolvase; resolvase 1490131..1490511 Acidimicrobium ferrooxidans DSM 10331 8323508 YP_003110023.1 CDS Afer_1426 NC_013124.1 1490508 1490753 D KEGG: blj:BLD_1224 site-specific integrase- resolvase; site-specific integrase-resolvase-like protein 1490508..1490753 Acidimicrobium ferrooxidans DSM 10331 8323509 YP_003110024.1 CDS Afer_1427 NC_013124.1 1490770 1492458 D TIGRFAM: transposase, IS605 OrfB family; KEGG: sma:SAV_5958 hypothetical protein; transposase, IS605 OrfB family 1490770..1492458 Acidimicrobium ferrooxidans DSM 10331 8323510 YP_003110025.1 CDS Afer_1428 NC_013124.1 1492877 1493941 D KEGG: gw1.XVI.1206.1.; hypothetical protein 1492877..1493941 Acidimicrobium ferrooxidans DSM 10331 8323511 YP_003110026.1 CDS Afer_1429 NC_013124.1 1493948 1494859 R PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase; KEGG: fre:Franean1_4167 phospholipid/glycerol acyltransferase; phospholipid/glycerol acyltransferase complement(1493948..1494859) Acidimicrobium ferrooxidans DSM 10331 8323512 YP_003110027.1 CDS Afer_1430 NC_013124.1 1494856 1496454 R KEGG: nca:Noca_2000 hypothetical protein; hypothetical protein complement(1494856..1496454) Acidimicrobium ferrooxidans DSM 10331 8323513 YP_003110028.1 CDS Afer_1431 NC_013124.1 1496455 1497657 R PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: fre:Franean1_4169 alcohol dehydrogenase; alcohol dehydrogenase zinc-binding domain-containing protein complement(1496455..1497657) Acidimicrobium ferrooxidans DSM 10331 8323514 YP_003110029.1 CDS Afer_1432 NC_013124.1 1497654 1499966 R TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; PFAM: Male sterility domain; Haloacid dehalogenase domain protein hydrolase; NAD-dependent epimerase/dehydratase; KEGG: fal:FRAAL3759 fatty acyl CoA reductase; HAD-superfamily hydrolase complement(1497654..1499966) Acidimicrobium ferrooxidans DSM 10331 8323515 YP_003110030.1 CDS Afer_1433 NC_013124.1 1500025 1500579 R hypothetical protein complement(1500025..1500579) Acidimicrobium ferrooxidans DSM 10331 8323516 YP_003110031.1 CDS Afer_1434 NC_013124.1 1500713 1502095 D PFAM: General substrate transporter; major facilitator superfamily MFS_1; KEGG: mse:Msed_0866 general substrate transporter; General substrate transporter 1500713..1502095 Acidimicrobium ferrooxidans DSM 10331 8323517 YP_003110032.1 CDS Afer_1435 NC_013124.1 1502521 1503120 R PFAM: ThiJ/PfpI domain protein; KEGG: cjk:jk0046 ThiJ/PfpI family protein; ThiJ/PfpI domain-containing protein complement(1502521..1503120) Acidimicrobium ferrooxidans DSM 10331 8323518 YP_003110033.1 CDS Afer_1436 NC_013124.1 1503464 1504183 D hypothetical protein 1503464..1504183 Acidimicrobium ferrooxidans DSM 10331 8323519 YP_003110034.1 CDS Afer_1437 NC_013124.1 1504235 1505797 R TIGRFAM: drug resistance transporter, EmrB/QacA subfamily; PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL2360 transmembrane efflux protein; EmrB/QacA subfamily drug resistance transporter complement(1504235..1505797) Acidimicrobium ferrooxidans DSM 10331 8323520 YP_003110035.1 CDS Afer_1438 NC_013124.1 1505941 1506558 D PFAM: regulatory protein TetR; KEGG: sco:SCO4167 TetR family transcriptional regulator; TetR family transcriptional regulator 1505941..1506558 Acidimicrobium ferrooxidans DSM 10331 8323521 YP_003110036.1 CDS Afer_1439 NC_013124.1 1506512 1506889 R PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: mmi:MMAR_p13 transcriptional repressor protein, MerR; ArsR family transcriptional regulator complement(1506512..1506889) Acidimicrobium ferrooxidans DSM 10331 8323522 YP_003110037.1 CDS Afer_1441 NC_013124.1 1508166 1508873 R PFAM: CobB/CobQ domain protein glutamine amidotransferase; KEGG: nfa:nfa3010 cobyric acid synthase; CobB/CobQ domain-containing protein glutamine amidotransferase complement(1508166..1508873) Acidimicrobium ferrooxidans DSM 10331 8323524 YP_003110038.1 CDS Afer_1442 NC_013124.1 1508870 1510096 R PFAM: domain of unknown function DUF1727; Mur ligase middle domain protein; KEGG: mjl:Mjls_5269 hypothetical protein; hypothetical protein complement(1508870..1510096) Acidimicrobium ferrooxidans DSM 10331 8323525 YP_003110039.1 CDS Afer_1443 NC_013124.1 1510408 1511352 D PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: fal:FRAAL4491 oxidative stress transcriptional regulator; LysR family transcriptional regulator 1510408..1511352 Acidimicrobium ferrooxidans DSM 10331 8323526 YP_003110040.1 CDS Afer_1444 NC_013124.1 1511491 1512420 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: nca:Noca_4120 short-chain dehydrogenase/reductase SDR; short-chain dehydrogenase/reductase SDR 1511491..1512420 Acidimicrobium ferrooxidans DSM 10331 8323527 YP_003110041.1 CDS Afer_1445 NC_013124.1 1512454 1513101 D PFAM: PhoU family protein; KEGG: sco:SCO4228 phosphate transport system regulator; phosphate uptake regulator PhoU 1512454..1513101 Acidimicrobium ferrooxidans DSM 10331 8323528 YP_003110042.1 CDS Afer_1446 NC_013124.1 1513109 1513780 R PFAM: response regulator receiver; regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: response regulator receiver; regulatory protein LuxR; KEGG: sgr:SGR_3764 two-component system response regulator; LuxR family two component transcriptional regulator complement(1513109..1513780) Acidimicrobium ferrooxidans DSM 10331 8323529 YP_003110043.1 CDS Afer_1447 NC_013124.1 1513836 1514279 R PFAM: UspA domain protein; KEGG: saq:Sare_1532 UspA domain-containing protein; UspA domain-containing protein complement(1513836..1514279) Acidimicrobium ferrooxidans DSM 10331 8323530 YP_003110044.1 CDS Afer_1448 NC_013124.1 1514384 1515664 D KEGG: fre:Franean1_0153 major facilitator transporter; major facilitator transporter 1514384..1515664 Acidimicrobium ferrooxidans DSM 10331 8323531 YP_003110045.1 CDS Afer_1449 NC_013124.1 1515721 1516893 D KEGG: afw:Anae109_1816 hypothetical protein; hypothetical protein 1515721..1516893 Acidimicrobium ferrooxidans DSM 10331 8323532 YP_003110046.1 CDS Afer_1450 NC_013124.1 1517617 1519905 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dsy:DSY3404 hypothetical protein; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1517617..1519905) Acidimicrobium ferrooxidans DSM 10331 8323533 YP_003110047.1 CDS Afer_1451 NC_013124.1 1519917 1521467 R KEGG: mse:Msed_0469 hypothetical protein; cyclic nucleotide-binding protein complement(1519917..1521467) Acidimicrobium ferrooxidans DSM 10331 8323534 YP_003110048.1 CDS Afer_1452 NC_013124.1 1521568 1522389 D TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: glo:Glov_1241 BadM/Rrf2 family transcriptional regulator; BadM/Rrf2 family transcriptional regulator 1521568..1522389 Acidimicrobium ferrooxidans DSM 10331 8323535 YP_003110049.1 CDS Afer_1453 NC_013124.1 1522334 1522789 R PFAM: ferric-uptake regulator; KEGG: cts:Ctha_1302 ferric uptake regulator, Fur family; Fur family ferric uptake regulator complement(1522334..1522789) Acidimicrobium ferrooxidans DSM 10331 8323536 YP_003110050.1 CDS Afer_1454 NC_013124.1 1522782 1523720 R KEGG: hya:HY04AAS1_0184 hypothetical protein; hypothetical protein complement(1522782..1523720) Acidimicrobium ferrooxidans DSM 10331 8323537 YP_003110051.1 CDS Afer_1455 NC_013124.1 1523920 1524888 D PFAM: aldo/keto reductase; KEGG: bac:BamMC406_2130 aldo/keto reductase; aldo/keto reductase 1523920..1524888 Acidimicrobium ferrooxidans DSM 10331 8323538 YP_003110052.1 CDS Afer_1456 NC_013124.1 1524999 1525724 D KEGG: bpa:BPP4333 integral membrane protein; hypothetical protein 1524999..1525724 Acidimicrobium ferrooxidans DSM 10331 8323539 YP_003110053.1 CDS Afer_1457 NC_013124.1 1525748 1526494 D PFAM: Methyltransferase type 12; Methyltransferase type 11; KEGG: sco:SCO3340 hypothetical protein; type 12 methyltransferase 1525748..1526494 Acidimicrobium ferrooxidans DSM 10331 8323540 YP_003110054.1 CDS Afer_1458 NC_013124.1 1526496 1527896 D PFAM: Amidase; KEGG: sen:SACE_2834 secreted amidase; Amidase 1526496..1527896 Acidimicrobium ferrooxidans DSM 10331 8323541 YP_003110055.1 CDS Afer_1459 NC_013124.1 1527893 1528360 D KEGG: stp:Strop_0704 hypothetical protein; hypothetical protein 1527893..1528360 Acidimicrobium ferrooxidans DSM 10331 8323542 YP_003110056.1 CDS Afer_1460 NC_013124.1 1528357 1530657 D PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein; KEGG: dau:Daud_0816 DEAD/DEAH box helicase domain- containing protein; DEAD/DEAH box helicase domain-containing protein 1528357..1530657 Acidimicrobium ferrooxidans DSM 10331 8323543 YP_003110057.1 CDS Afer_1461 NC_013124.1 1530654 1531304 R KEGG: cya:CYA_0912 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; helix-hairpin-helix motif; SMART: HhH-GPD family protein; endonuclease III complement(1530654..1531304) Acidimicrobium ferrooxidans DSM 10331 8323544 YP_003110058.1 CDS Afer_1462 NC_013124.1 1531335 1532267 D TIGRFAM: mycothiol biosynthesis acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: ace:Acel_2026 GCN5-related N- acetyltransferase; mycothiol biosynthesis acetyltransferase 1531335..1532267 Acidimicrobium ferrooxidans DSM 10331 8323545 YP_003110059.1 CDS Afer_1463 NC_013124.1 1532289 1533347 D PFAM: aminotransferase class V; KEGG: stp:Strop_1799 aminotransferase, class V; class V aminotransferase 1532289..1533347 Acidimicrobium ferrooxidans DSM 10331 8323546 YP_003110060.1 CDS Afer_1464 NC_013124.1 1534011 1534190 R hypothetical protein complement(1534011..1534190) Acidimicrobium ferrooxidans DSM 10331 8323547 YP_003110061.1 CDS Afer_1465 NC_013124.1 1534201 1534602 R KEGG: sgl:SG1539 hemin ABC transporter permease component; hypothetical protein complement(1534201..1534602) Acidimicrobium ferrooxidans DSM 10331 8323548 YP_003110062.1 CDS Afer_1466 NC_013124.1 1534563 1535081 R KEGG: bcj:BCAM0375 major facilitator superfamily protein; major facilitator superfamily protein complement(1534563..1535081) Acidimicrobium ferrooxidans DSM 10331 8323549 YP_003110063.1 CDS Afer_1467 NC_013124.1 1535224 1536651 D PFAM: Exonuclease RNase T and DNA polymerase III; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Exonuclease; Excinuclease ABC C subunit domain protein; KEGG: ace:Acel_0968 hypothetical protein; Exonuclease RNase T and DNA polymerase III 1535224..1536651 Acidimicrobium ferrooxidans DSM 10331 8323550 YP_003110064.1 CDS Afer_1468 NC_013124.1 1536601 1537665 R KEGG: hmo:HM1_1918 anthranilate phosphoribosyltransferase; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; Glycosyl transferase, family 3-like; anthranilate phosphoribosyltransferase complement(1536601..1537665) Acidimicrobium ferrooxidans DSM 10331 8323551 YP_003110065.1 CDS Afer_1469 NC_013124.1 1537652 1540072 R KEGG: eba:ebA6041 signal transducer protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; diguanylate cyclase/phosphodiesterase complement(1537652..1540072) Acidimicrobium ferrooxidans DSM 10331 8323552 YP_003110066.1 CDS Afer_1470 NC_013124.1 1540170 1542065 D KEGG: cti:RALTA_B0100 diguanylate cyclase (GGDEAF) and C-di-GMP phosphodiesterase (EAL domain) with CHASE and PAS domains; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein; diguanylate cyclase 1540170..1542065 Acidimicrobium ferrooxidans DSM 10331 8323553 YP_003110067.1 CDS Afer_1471 NC_013124.1 1542049 1543254 R PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: sth:STH1253 acyl-CoA dehydrogenase, short- chain specific; acyl-CoA dehydrogenase domain-containing protein complement(1542049..1543254) Acidimicrobium ferrooxidans DSM 10331 8323554 YP_003110068.1 CDS Afer_1472 NC_013124.1 1543397 1544803 D PFAM: carbohydrate kinase FGGY; KEGG: rsq:Rsph17025_1200 glycerol kinase; Glycerol kinase 1543397..1544803 Acidimicrobium ferrooxidans DSM 10331 8323555 YP_003110069.1 CDS Afer_1473 NC_013124.1 1544821 1545804 R KEGG: sus:Acid_7587 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein; 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein complement(1544821..1545804) Acidimicrobium ferrooxidans DSM 10331 8323556 YP_003110070.1 CDS Afer_1474 NC_013124.1 1545903 1546994 D PFAM: ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; KEGG: cms:CMS_0622 phosphoribosylaminoimidazole carboxylase ATPase subunit PurK; phosphoribosylaminoimidazole carboxylase 1545903..1546994 Acidimicrobium ferrooxidans DSM 10331 8323557 YP_003110071.1 CDS Afer_1475 NC_013124.1 1546991 1547482 D KEGG: mva:Mvan_1714 phosphoribosylaminoimidazole carboxylase, catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; phosphoribosylaminoimidazole carboxylase, catalytic subunit 1546991..1547482 Acidimicrobium ferrooxidans DSM 10331 8323558 YP_003110072.1 CDS Afer_1476 NC_013124.1 1547451 1548200 D KEGG: saq:Sare_3286 hypothetical protein; hypothetical protein 1547451..1548200 Acidimicrobium ferrooxidans DSM 10331 8323559 YP_003110073.1 CDS Afer_1477 NC_013124.1 1548704 1550230 R PFAM: transposase IS4 family protein; KEGG: mva:Mvan_4071 transposase, IS4 family protein; transposase IS4 family protein complement(1548704..1550230) Acidimicrobium ferrooxidans DSM 10331 8323560 YP_003110074.1 CDS Afer_1478 NC_013124.1 1550436 1550789 R PFAM: carbon storage regulator; KEGG: lxx:Lxx06470 carbon storage regulator CsrA; carbon storage regulator CsrA complement(1550436..1550789) Acidimicrobium ferrooxidans DSM 10331 8323561 YP_003110075.1 CDS Afer_1479 NC_013124.1 1550789 1551061 R hypothetical protein complement(1550789..1551061) Acidimicrobium ferrooxidans DSM 10331 8323562 YP_003110076.1 CDS Afer_1480 NC_013124.1 1551179 1552132 R hypothetical protein complement(1551179..1552132) Acidimicrobium ferrooxidans DSM 10331 8323563 YP_003110077.1 CDS Afer_1481 NC_013124.1 1552322 1553242 R hypothetical protein complement(1552322..1553242) Acidimicrobium ferrooxidans DSM 10331 8323564 YP_003110078.1 CDS Afer_1482 NC_013124.1 1553258 1554154 R hypothetical protein complement(1553258..1554154) Acidimicrobium ferrooxidans DSM 10331 8323565 YP_003110079.1 CDS Afer_1483 NC_013124.1 1554151 1554957 R hypothetical protein complement(1554151..1554957) Acidimicrobium ferrooxidans DSM 10331 8323566 YP_003110080.1 CDS Afer_1484 NC_013124.1 1554962 1555657 R KEGG: cms:CMS_pCSL0080 hypothetical protein; hypothetical protein complement(1554962..1555657) Acidimicrobium ferrooxidans DSM 10331 8323567 YP_003110081.1 CDS Afer_1485 NC_013124.1 1555746 1556066 D PFAM: transposase IS3/IS911 family protein; KEGG: mva:Mvan_5059 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein 1555746..1556066 Acidimicrobium ferrooxidans DSM 10331 8323568 YP_003110082.1 CDS Afer_1486 NC_013124.1 1556066 1556935 D PFAM: Integrase catalytic region; KEGG: mva:Mvan_5060 integrase catalytic subunit; integrase catalytic subunit 1556066..1556935 Acidimicrobium ferrooxidans DSM 10331 8323569 YP_003110083.1 CDS Afer_1487 NC_013124.1 1557180 1558706 R PFAM: transposase IS4 family protein; KEGG: mva:Mvan_4071 transposase, IS4 family protein; transposase IS4 family protein complement(1557180..1558706) Acidimicrobium ferrooxidans DSM 10331 8323570 YP_003110084.1 CDS Afer_1488 NC_013124.1 1559146 1559853 R KEGG: mva:Mvan_3619 hypothetical protein; Zn-ribbon protein complement(1559146..1559853) Acidimicrobium ferrooxidans DSM 10331 8323572 YP_003110085.1 CDS Afer_1489 NC_013124.1 1560010 1560477 R PFAM: RDD domain containing protein; KEGG: pca:Pcar_2416 hypothetical protein; RDD domain-containing protein complement(1560010..1560477) Acidimicrobium ferrooxidans DSM 10331 8323573 YP_003110086.1 CDS Afer_1490 NC_013124.1 1560606 1561853 R PFAM: major facilitator superfamily MFS_1; KEGG: fal:FRAAL2900 major facilitator superfamily permease; major facilitator superfamily protein complement(1560606..1561853) Acidimicrobium ferrooxidans DSM 10331 8323574 YP_003110087.1 CDS Afer_1491 NC_013124.1 1561927 1562436 D PFAM: Inorganic pyrophosphatase; KEGG: msm:MSMEG_6114 inorganic pyrophosphatase; Inorganic diphosphatase 1561927..1562436 Acidimicrobium ferrooxidans DSM 10331 8323575 YP_003110088.1 CDS Afer_1492 NC_013124.1 1562501 1562830 D PFAM: nitrogen-fixing NifU domain protein; KEGG: sat:SYN_02452 NifU-like domain-containing protein; nitrogen-fixing NifU domain-containing protein 1562501..1562830 Acidimicrobium ferrooxidans DSM 10331 8323576 YP_003110089.1 CDS Afer_1493 NC_013124.1 1562832 1563566 D PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sma:SAV_3829 enoyl-CoA hydratase; enoyl-CoA hydratase/isomerase 1562832..1563566 Acidimicrobium ferrooxidans DSM 10331 8323577 YP_003110090.1 CDS Afer_1494 NC_013124.1 1563557 1563802 D KEGG: mva:Mvan_4307 hypothetical protein; hypothetical protein 1563557..1563802 Acidimicrobium ferrooxidans DSM 10331 8323578 YP_003110091.1 CDS Afer_1495 NC_013124.1 1563814 1564899 R PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; KEGG: kra:Krad_1362 Cys/Met metabolism pyridoxal- phosphate-dependent protein; Cys/Met metabolism pyridoxal-phosphate-dependent protein complement(1563814..1564899) Acidimicrobium ferrooxidans DSM 10331 8323579 YP_003110092.1 CDS Afer_1496 NC_013124.1 1564923 1565219 R KEGG: kra:Krad_1406 hypothetical protein; hypothetical protein complement(1564923..1565219) Acidimicrobium ferrooxidans DSM 10331 8323580 YP_003110093.1 CDS Afer_1497 NC_013124.1 1565244 1565585 R TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: sen:SACE_6049 50S ribosomal protein L19; 50S ribosomal protein L19 complement(1565244..1565585) Acidimicrobium ferrooxidans DSM 10331 8323581 YP_003110094.1 CDS Afer_1498 NC_013124.1 1565582 1566349 R KEGG: gka:GK1201 tRNA (guanine-N(1)-)- methyltransferase (M1G-methyltransferase); TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase; tRNA (guanine-N1)-methyltransferase complement(1565582..1566349) Acidimicrobium ferrooxidans DSM 10331 8323582 YP_003110095.1 CDS Afer_1499 NC_013124.1 1566358 1566828 R TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; KEGG: sth:STH1469 16S rRNA processing protein; 16S rRNA processing protein RimM complement(1566358..1566828) Acidimicrobium ferrooxidans DSM 10331 8323583 YP_003110096.1 CDS Afer_1500 NC_013124.1 1566825 1567199 R KEGG: nca:Noca_3259 hypothetical protein; hypothetical protein complement(1566825..1567199) Acidimicrobium ferrooxidans DSM 10331 8323584 YP_003110097.1 CDS Afer_1501 NC_013124.1 1567199 1567450 R TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: nth:Nther_1369 SSU ribosomal protein S16P; 30S ribosomal protein S16 complement(1567199..1567450) Acidimicrobium ferrooxidans DSM 10331 8323585 YP_003110098.1 CDS Afer_1502 NC_013124.1 1567527 1568858 R KEGG: sth:STH1465 signal recognition particle; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; Signal peptide binding (SRP54) M- domain protein; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase; signal recognition particle protein complement(1567527..1568858) Acidimicrobium ferrooxidans DSM 10331 8323586 YP_003110099.1 CDS Afer_1503 NC_013124.1 1568851 1569954 R KEGG: mav:MAV_3776 signal recognition particle- docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; SMART: AAA ATPase; signal recognition particle-docking protein FtsY complement(1568851..1569954) Acidimicrobium ferrooxidans DSM 10331 8323587 YP_003110100.1 CDS Afer_1504 NC_013124.1 1570332 1570574 R KEGG: hypothetical protein LOC100148517; hypothetical protein complement(1570332..1570574) Acidimicrobium ferrooxidans DSM 10331 8323588 YP_003110101.1 CDS Afer_1505 NC_013124.1 1570853 1571410 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: sco:SCO4866 ECF sigma factor; ECF subfamily RNA polymerase sigma-24 subunit 1570853..1571410 Acidimicrobium ferrooxidans DSM 10331 8323589 YP_003110102.1 CDS Afer_1506 NC_013124.1 1571407 1572258 D KEGG: YALI0C15532p; hypothetical protein 1571407..1572258 Acidimicrobium ferrooxidans DSM 10331 8323590 YP_003110103.1 CDS Afer_1507 NC_013124.1 1572307 1575654 R PFAM: SMC domain protein; KEGG: sen:SACE_6071 chromosome segregation ATPase; SMC domain-containing protein complement(1572307..1575654) Acidimicrobium ferrooxidans DSM 10331 8323591 YP_003110104.1 CDS Afer_1508 NC_013124.1 1575655 1576482 R KEGG: sen:SACE_6099 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: DNA glycosylase/AP lyase, H2TH DNA-binding; Formamidopyrimidine-DNA glycosylase catalytic domain protein; zinc finger Fpg domain protein; formamidopyrimidine-DNA glycosylase complement(1575655..1576482) Acidimicrobium ferrooxidans DSM 10331 8323592 YP_003110105.1 CDS Afer_1509 NC_013124.1 1576466 1577257 R KEGG: bba:Bd1941 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein; ribonuclease III complement(1576466..1577257) Acidimicrobium ferrooxidans DSM 10331 8323593 YP_003110106.1 CDS Afer_1510 NC_013124.1 1577254 1577538 R PFAM: phosphopantetheine-binding; KEGG: csc:Csac_1606 acyl carrier protein; phosphopantetheine-binding protein complement(1577254..1577538) Acidimicrobium ferrooxidans DSM 10331 8323594 YP_003110107.1 CDS Afer_1511 NC_013124.1 1577531 1578511 R TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: emi:Emin_0658 fatty acid/phospholipid synthesis protein PlsX; fatty acid/phospholipid synthesis protein PlsX complement(1577531..1578511) Acidimicrobium ferrooxidans DSM 10331 8323595 YP_003110108.1 CDS Afer_1512 NC_013124.1 1578742 1579263 R PFAM: protein of unknown function DUF177; KEGG: nca:Noca_3282 hypothetical protein; hypothetical protein complement(1578742..1579263) Acidimicrobium ferrooxidans DSM 10331 8323596 YP_003110109.1 CDS Afer_1513 NC_013124.1 1579256 1579789 R KEGG: ace:Acel_1577 hypothetical protein; hypothetical protein complement(1579256..1579789) Acidimicrobium ferrooxidans DSM 10331 8323597 YP_003110110.1 CDS Afer_1514 NC_013124.1 1579786 1580271 R KEGG: gvi:glr0847 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase; pantetheine-phosphate adenylyltransferase complement(1579786..1580271) Acidimicrobium ferrooxidans DSM 10331 8323598 YP_003110111.1 CDS Afer_1515 NC_013124.1 1580313 1580846 R TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase KEGG: aeh:Mlg_2656 methyltransferase; methyltransferase complement(1580313..1580846) Acidimicrobium ferrooxidans DSM 10331 8323599 YP_003110112.1 CDS Afer_1516 NC_013124.1 1580849 1583011 R PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: DEAD-like helicases ; helicase domain protein; KEGG: rca:Rcas_0601 ATP-dependent DNA helicase RecG; DEAD/DEAH box helicase domain-containing protein complement(1580849..1583011) Acidimicrobium ferrooxidans DSM 10331 8323600 YP_003110113.1 CDS Afer_1517 NC_013124.1 1583008 1584627 R PFAM: Dak phosphatase; KEGG: nca:Noca_3286 Dak phosphatase; Dak phosphatase complement(1583008..1584627) Acidimicrobium ferrooxidans DSM 10331 8323601 YP_003110114.1 CDS Afer_1518 NC_013124.1 1584701 1584889 D TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: fre:Franean1_1131 50S ribosomal protein L28; 50S ribosomal protein L28 1584701..1584889 Acidimicrobium ferrooxidans DSM 10331 8323602 YP_003110115.1 CDS Afer_1519 NC_013124.1 1584895 1585911 D PFAM: ferrochelatase; KEGG: nfa:nfa34750 ferrochelatase; Ferrochelatase 1584895..1585911 Acidimicrobium ferrooxidans DSM 10331 8323603 YP_003110116.1 CDS Afer_1520 NC_013124.1 1586019 1587851 D PFAM: extracellular solute-binding protein family 5; KEGG: saq:Sare_4778 extracellular solute-binding protein; family 5 extracellular solute-binding protein 1586019..1587851 Acidimicrobium ferrooxidans DSM 10331 8323604 YP_003110117.1 CDS Afer_1521 NC_013124.1 1587848 1589260 R KEGG: mbo:Mb1152 glucose-6-phosphate 1- dehydrogenase; TIGRFAM: glucose-6-phosphate 1-dehydrogenase; PFAM: glucose-6-phosphate dehydrogenase; glucose-6-phosphate 1-dehydrogenase complement(1587848..1589260) Acidimicrobium ferrooxidans DSM 10331 8323605 YP_003110118.1 CDS Afer_1522 NC_013124.1 1589236 1590117 R PFAM: Aldose 1-epimerase; KEGG: saq:Sare_0514 aldose 1-epimerase; Aldose 1-epimerase complement(1589236..1590117) Acidimicrobium ferrooxidans DSM 10331 8323606 YP_003110119.1 CDS Afer_1523 NC_013124.1 1590852 1592462 R PFAM: Cytochrome b/b6 domain; KEGG: ace:Acel_1781 hypothetical protein; cytochrome b/b6 domain-containing protein complement(1590852..1592462) Acidimicrobium ferrooxidans DSM 10331 8323608 YP_003110120.1 CDS Afer_1524 NC_013124.1 1592459 1592635 R KEGG: ace:Acel_1781 hypothetical protein; hypothetical protein complement(1592459..1592635) Acidimicrobium ferrooxidans DSM 10331 8323609 YP_003110121.1 CDS Afer_1525 NC_013124.1 1592754 1596257 R KEGG: ajs:Ajs_2017 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: GGDEF domain containing protein; EAL domain protein; diguanylate cyclase/phosphodiesterase complement(1592754..1596257) Acidimicrobium ferrooxidans DSM 10331 8323610 YP_003110122.1 CDS Afer_1526 NC_013124.1 1596404 1597618 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: stp:Strop_0934 acyl-CoA dehydrogenase domain- containing protein; acyl-CoA dehydrogenase domain-containing protein 1596404..1597618 Acidimicrobium ferrooxidans DSM 10331 8323611 YP_003110123.1 CDS Afer_1527 NC_013124.1 1597615 1598499 D PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: nca:Noca_4392 3-hydroxybutyryl-CoA dehydrogenase; 3-hydroxybutyryl-CoA dehydrogenase 1597615..1598499 Acidimicrobium ferrooxidans DSM 10331 8323612 YP_003110124.1 CDS Afer_1528 NC_013124.1 1598539 1599945 D TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl-tRNA synthetase class Ic; KEGG: fra:Francci3_3219 glutamyl-tRNA synthetase; glutamyl-tRNA synthetase 1598539..1599945 Acidimicrobium ferrooxidans DSM 10331 8323613 YP_003110125.1 CDS Afer_1529 NC_013124.1 1600431 1601981 R TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerization) domain; KEGG: rxy:Rxyl_3129 2-isopropylmalate synthase; 2-isopropylmalate synthase complement(1600431..1601981) Acidimicrobium ferrooxidans DSM 10331 8323615 YP_003110126.1 CDS Afer_1530 NC_013124.1 1602182 1603765 R catalyzes the formation of 3-phosphonooxypyruvate from 3-phospho-D-glycerate in serine biosynthesis; can also reduce alpha ketoglutarate to form 2-hydroxyglutarate; D-3-phosphoglycerate dehydrogenase complement(1602182..1603765) Acidimicrobium ferrooxidans DSM 10331 8323616 YP_003110127.1 CDS Afer_1531 NC_013124.1 1603792 1604988 R PFAM: aminotransferase class I and II; KEGG: rsa:RSal33209_0984 aspartate aminotransferase; class I and II aminotransferase complement(1603792..1604988) Acidimicrobium ferrooxidans DSM 10331 8323617 YP_003110128.1 CDS Afer_1532 NC_013124.1 1605110 1606258 D catalyzes the formation of 3-phosphonooxypyruvate and glutamate from O-phospho-L-serine and 2-oxoglutarate; phosphoserine aminotransferase 1605110..1606258 Acidimicrobium ferrooxidans DSM 10331 8323618 YP_003110129.1 CDS Afer_1533 NC_013124.1 1606268 1606876 R KEGG: fre:Franean1_1114 isopropylmalate isomerase small subunit; TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase, small subunit complement(1606268..1606876) Acidimicrobium ferrooxidans DSM 10331 8323619 YP_003110130.1 CDS Afer_1534 NC_013124.1 1606879 1608285 R KEGG: ace:Acel_1591 isopropylmalate isomerase large subunit; TIGRFAM: 3-isopropylmalate dehydratase, large subunit; PFAM: aconitate hydratase domain protein; 3-isopropylmalate dehydratase, large subunit complement(1606879..1608285) Acidimicrobium ferrooxidans DSM 10331 8323620 YP_003110131.1 CDS Afer_1535 NC_013124.1 1608313 1608795 R PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: fra:Francci3_3904 GreA/GreB family elongation factor; GreA/GreB family elongation factor complement(1608313..1608795) Acidimicrobium ferrooxidans DSM 10331 8323621 YP_003110132.1 CDS Afer_1536 NC_013124.1 1608970 1609998 D PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: nca:Noca_3368 3-isopropylmalate dehydrogenase; 3-isopropylmalate dehydrogenase 1608970..1609998 Acidimicrobium ferrooxidans DSM 10331 8323622 YP_003110133.1 CDS Afer_1537 NC_013124.1 1609985 1610911 D TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: fre:Franean1_1099 branched-chain amino acid aminotransferase; branched-chain amino acid aminotransferase 1609985..1610911 Acidimicrobium ferrooxidans DSM 10331 8323623 YP_003110134.1 CDS Afer_1538 NC_013124.1 1610918 1612510 D TIGRFAM: 2-isopropylmalate synthase/homocitrate synthase family protein; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerization) domain; KEGG: tfu:Tfu_0617 alpha- isopropylmalate/homocitrate synthase family transferase; alpha-isopropylmalate/homocitrate synthase family transferase 1610918..1612510 Acidimicrobium ferrooxidans DSM 10331 8323624 YP_003110135.1 CDS Afer_1539 NC_013124.1 1612524 1612985 D hypothetical protein 1612524..1612985 Acidimicrobium ferrooxidans DSM 10331 8323625 YP_003110136.1 CDS Afer_1540 NC_013124.1 1612982 1613539 R hypothetical protein complement(1612982..1613539) Acidimicrobium ferrooxidans DSM 10331 8323626 YP_003110137.1 CDS Afer_1542 NC_013124.1 1620173 1621471 R PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: pac:PPA0152 NADH dehydrogenase; FAD-dependent pyridine nucleotide-disulfide oxidoreductase complement(1620173..1621471) Acidimicrobium ferrooxidans DSM 10331 8323632 YP_003110138.1 CDS Afer_1543 NC_013124.1 1621508 1622149 R KEGG: scl:sce8592 hypothetical protein; hypothetical protein complement(1621508..1622149) Acidimicrobium ferrooxidans DSM 10331 8323633 YP_003110139.1 CDS Afer_1544 NC_013124.1 1622133 1623368 R KEGG: cmi:CMM_1462 hypothetical protein; hypothetical protein complement(1622133..1623368) Acidimicrobium ferrooxidans DSM 10331 8323634 YP_003110140.1 CDS Afer_1545 NC_013124.1 1623365 1624387 R KEGG: ava:Ava_0133 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain protein; acetohydroxy acid isomeroreductase; ketol-acid reductoisomerase complement(1623365..1624387) Acidimicrobium ferrooxidans DSM 10331 8323635 YP_003110141.1 CDS Afer_1546 NC_013124.1 1624391 1624963 R TIGRFAM: acetolactate synthase, small subunit; PFAM: amino acid-binding ACT domain protein; KEGG: ace:Acel_0707 acetolactate synthase 3 regulatory subunit; acetolactate synthase, small subunit complement(1624391..1624963) Acidimicrobium ferrooxidans DSM 10331 8323636 YP_003110142.1 CDS Afer_1547 NC_013124.1 1624960 1626669 R TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; KEGG: kra:Krad_1335 acetolactate synthase 1 catalytic subunit; acetolactate synthase, large subunit, biosynthetic type complement(1624960..1626669) Acidimicrobium ferrooxidans DSM 10331 8323637 YP_003110143.1 CDS Afer_1548 NC_013124.1 1626838 1628541 R catalyzes the dehydration of 2,3-dihydroxy-3-methylbutanoate to 3-methyl-2-oxobutanoate in valine and isoleucine biosynthesis; dihydroxy-acid dehydratase complement(1626838..1628541) Acidimicrobium ferrooxidans DSM 10331 8323638 YP_003110144.1 CDS Afer_1549 NC_013124.1 1628621 1630072 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; GatB/Yqey domain protein; GatB central domain protein; KEGG: pth:PTH_2521 aspartyl/glutamyl-tRNA amidotransferase subunit B; glutamyl-tRNA(Gln) amidotransferase subunit B complement(1628621..1630072) Acidimicrobium ferrooxidans DSM 10331 8323639 YP_003110145.1 CDS Afer_1550 NC_013124.1 1630069 1631508 R KEGG: fre:Franean1_1085 aspartyl/glutamyl-tRNA amidotransferase subunit A; TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; glutamyl-tRNA(Gln) amidotransferase subunit A complement(1630069..1631508) Acidimicrobium ferrooxidans DSM 10331 8323640 YP_003110146.1 CDS Afer_1551 NC_013124.1 1631505 1631807 R TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; KEGG: dps:DP0644 Glu-tRNA(Gln) amidotransferase, subunit C; glutamyl-tRNA(Gln) amidotransferase subunit C complement(1631505..1631807) Acidimicrobium ferrooxidans DSM 10331 8323641 YP_003110147.1 CDS Afer_1552 NC_013124.1 1631840 1632277 R KEGG: prw:PsycPRwf_1743 hypothetical protein; hypothetical protein complement(1631840..1632277) Acidimicrobium ferrooxidans DSM 10331 8323642 YP_003110148.1 CDS Afer_1553 NC_013124.1 1632312 1634204 R PFAM: Serine/threonine protein kinase-related; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; tyrosine protein kinase; PASTA domain containing protein; KEGG: ace:Acel_0986 serine/threonine protein kinase; serine/threonine protein kinase with PASTA sensor(s) complement(1632312..1634204) Acidimicrobium ferrooxidans DSM 10331 8323643 YP_003110149.1 CDS Afer_1554 NC_013124.1 1634259 1636253 R KEGG: cau:Caur_0241 DNA ligase, NAD-dependent; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; BRCT domain protein; helix-hairpin-helix motif; zinc-finger NAD- dependent DNA ligase C4-type; NAD-dependent DNA ligase OB- fold; SMART: NAD-dependent DNA ligase ; BRCT domain protein; Helix-hairpin-helix DNA-binding class 1; NAD-dependent DNA ligase complement(1634259..1636253) Acidimicrobium ferrooxidans DSM 10331 8323644 YP_003110150.1 CDS Afer_1555 NC_013124.1 1636246 1637271 R PFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; ExsB family protein; KEGG: scl:sce7297 tRNA (5-methylaminomethyl-2- thiouridylate)-methyltransferase; tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase complement(1636246..1637271) Acidimicrobium ferrooxidans DSM 10331 8323645 YP_003110151.1 CDS Afer_1556 NC_013124.1 1637298 1638056 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: ade:Adeh_3985 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(1637298..1638056) Acidimicrobium ferrooxidans DSM 10331 8323646 YP_003110152.1 CDS Afer_1557 NC_013124.1 1638094 1638687 D hypothetical protein 1638094..1638687 Acidimicrobium ferrooxidans DSM 10331 8323647 YP_003110153.1 CDS Afer_1558 NC_013124.1 1638749 1639558 D PFAM: prolipoprotein diacylglyceryl transferase; KEGG: rxy:Rxyl_1139 prolipoprotein diacylglyceryl transferase; prolipoprotein diacylglyceryl transferase 1638749..1639558 Acidimicrobium ferrooxidans DSM 10331 8323648 YP_003110154.1 CDS Afer_1559 NC_013124.1 1639555 1640886 D TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like; KEGG: ace:Acel_1692 nicotinate phosphoribosyltransferase; nicotinate phosphoribosyltransferase 1639555..1640886 Acidimicrobium ferrooxidans DSM 10331 8323649 YP_003110155.1 CDS Afer_1560 NC_013124.1 1640896 1642134 D PFAM: beta-lactamase; KEGG: sen:SACE_2212 beta-lactamase; beta-lactamase 1640896..1642134 Acidimicrobium ferrooxidans DSM 10331 8323650 YP_003110156.1 CDS Afer_1561 NC_013124.1 1642187 1642567 R TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: tfu:Tfu_0172 thioredoxin; thioredoxin complement(1642187..1642567) Acidimicrobium ferrooxidans DSM 10331 8323651 YP_003110157.1 CDS Afer_1562 NC_013124.1 1642754 1643212 R PFAM: protein of unknown function DUF501; KEGG: rxy:Rxyl_0915 hypothetical protein; hypothetical protein complement(1642754..1643212) Acidimicrobium ferrooxidans DSM 10331 8323653 YP_003110158.1 CDS Afer_1563 NC_013124.1 1643202 1643906 R PFAM: carbon monoxide dehydrogenase subunit G; Activator of Hsp90 ATPase 1 family protein; KEGG: fre:Franean1_3210 carbon monoxide dehydrogenase subunit G; carbon monoxide dehydrogenase subunit G complement(1643202..1643906) Acidimicrobium ferrooxidans DSM 10331 8323654 YP_003110159.1 CDS Afer_1564 NC_013124.1 1643909 1644502 R KEGG: rxy:Rxyl_0118 4-diphosphocytidyl-2C-methyl-D- erythritol synthase; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase complement(1643909..1644502) Acidimicrobium ferrooxidans DSM 10331 8323655 YP_003110160.1 CDS Afer_1565 NC_013124.1 1644499 1645707 R PFAM: protein of unknown function DUF182; KEGG: sgr:SGR_1805 xanthine dehydrogenase; hypothetical protein complement(1644499..1645707) Acidimicrobium ferrooxidans DSM 10331 8323656 YP_003110161.1 CDS Afer_1566 NC_013124.1 1645700 1646794 R PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor A; KEGG: rha:RHA1_ro04978 hypothetical protein; VWA containing CoxE family protein complement(1645700..1646794) Acidimicrobium ferrooxidans DSM 10331 8323657 YP_003110162.1 CDS Afer_1567 NC_013124.1 1646778 1647746 R PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: rha:RHA1_ro04979 MoxR family ATPase; ATPase complement(1646778..1647746) Acidimicrobium ferrooxidans DSM 10331 8323658 YP_003110163.1 CDS Afer_1568 NC_013124.1 1647733 1648542 R PFAM: molybdopterin dehydrogenase FAD-binding; CO dehydrogenase flavoprotein domain protein; KEGG: sen:SACE_1160 carbon monoxide dehydrogenase, medium chain; FAD-binding molybdopterin dehydrogenase complement(1647733..1648542) Acidimicrobium ferrooxidans DSM 10331 8323659 YP_003110164.1 CDS Afer_1569 NC_013124.1 1648555 1650942 R PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: rxy:Rxyl_0112 xanthine dehydrogenase, molybdenum binding subunit apoprotein; carbon-monoxide dehydrogenase (acceptor) complement(1648555..1650942) Acidimicrobium ferrooxidans DSM 10331 8323660 YP_003110165.1 CDS Afer_1570 NC_013124.1 1650939 1651412 R PFAM: [2Fe-2S]-binding domain protein; ferredoxin; KEGG: sen:SACE_1161 carbon monoxide dehydrogenase small chain; (2Fe-2S)-binding domain-containing protein complement(1650939..1651412) Acidimicrobium ferrooxidans DSM 10331 8323661 YP_003110166.1 CDS Afer_1571 NC_013124.1 1651662 1652141 D PFAM: protein of unknown function DUF107; KEGG: cpc:Cpar_0823 protein of unknown function DUF107; hypothetical protein 1651662..1652141 Acidimicrobium ferrooxidans DSM 10331 8323662 YP_003110167.1 CDS Afer_1572 NC_013124.1 1652155 1653078 D PFAM: band 7 protein; SMART: band 7 protein; KEGG: tpe:Tpen_0832 band 7 protein; hypothetical protein 1652155..1653078 Acidimicrobium ferrooxidans DSM 10331 8323663 YP_003110168.1 CDS Afer_1573 NC_013124.1 1653735 1655069 R PFAM: inner-membrane translocator; KEGG: saq:Sare_4238 monosaccharide-transporting ATPase; inner-membrane translocator complement(1653735..1655069) Acidimicrobium ferrooxidans DSM 10331 8323664 YP_003110169.1 CDS Afer_1574 NC_013124.1 1655069 1655854 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mva:Mvan_5292 ABC transporter-related protein; ABC transporter-like protein complement(1655069..1655854) Acidimicrobium ferrooxidans DSM 10331 8323665 YP_003110170.1 CDS Afer_1575 NC_013124.1 1655929 1657143 R KEGG: ace:Acel_1132 solute-binding protein; solute-binding protein complement(1655929..1657143) Acidimicrobium ferrooxidans DSM 10331 8323666 YP_003110171.1 CDS Afer_1576 NC_013124.1 1657259 1657951 R PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: hau:Haur_2262 two component transcriptional regulator; winged helix family two component transcriptional regulator complement(1657259..1657951) Acidimicrobium ferrooxidans DSM 10331 8323667 YP_003110172.1 CDS Afer_1577 NC_013124.1 1657948 1660200 R PFAM: ABC transporter related; ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; AAA ATPase; KEGG: sgr:SGR_1497 ABC transporter ATP- binding protein; histidine kinase complement(1657948..1660200) Acidimicrobium ferrooxidans DSM 10331 8323668 YP_003110173.1 CDS Afer_1578 NC_013124.1 1660234 1662495 D KEGG: ade:Adeh_2512 UvrD/REP helicase; hypothetical protein 1660234..1662495 Acidimicrobium ferrooxidans DSM 10331 8323669 YP_003110174.1 CDS Afer_1579 NC_013124.1 1662495 1665464 D PFAM: UvrD/REP helicase; KEGG: syf:Synpcc7942_1157 hypothetical protein; UvrD/REP helicase 1662495..1665464 Acidimicrobium ferrooxidans DSM 10331 8323670 YP_003110175.1 CDS Afer_1580 NC_013124.1 1665474 1666040 D hypothetical protein 1665474..1666040 Acidimicrobium ferrooxidans DSM 10331 8323671 YP_003110176.1 CDS Afer_1581 NC_013124.1 1666076 1666636 D TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: sma:SAV_6582 RNA polymerase sigma factor SigK; ECF subfamily RNA polymerase sigma-24 subunit 1666076..1666636 Acidimicrobium ferrooxidans DSM 10331 8323672 YP_003110177.1 CDS Afer_1582 NC_013124.1 1666636 1667370 D KEGG: fal:FRAAL3631 hypothetical protein; hypothetical protein 1666636..1667370 Acidimicrobium ferrooxidans DSM 10331 8323673 YP_003110178.1 CDS Afer_1583 NC_013124.1 1667476 1667937 R hypothetical protein complement(1667476..1667937) Acidimicrobium ferrooxidans DSM 10331 8323674 YP_003110179.1 CDS Afer_1584 NC_013124.1 1668068 1668790 R PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: ttj:TTHB141 glycerophosphoryl diester phosphodiesterase; glycerophosphoryl diester phosphodiesterase complement(1668068..1668790) Acidimicrobium ferrooxidans DSM 10331 8323675 YP_003110180.1 CDS Afer_1585 NC_013124.1 1669078 1671366 R PFAM: aldehyde oxidase and xanthine dehydrogenase molybdopterin binding; aldehyde oxidase and xanthine dehydrogenase a/b hammerhead; KEGG: sen:SACE_5140 carbon monoxide dehydrogenase large chain; carbon-monoxide dehydrogenase (acceptor) complement(1669078..1671366) Acidimicrobium ferrooxidans DSM 10331 8323676 YP_003110181.1 CDS Afer_1586 NC_013124.1 1671575 1672048 R KEGG: mva:Mvan_5241 FHA domain-containing protein; hypothetical protein complement(1671575..1672048) Acidimicrobium ferrooxidans DSM 10331 8323677 YP_003110182.1 CDS Afer_1587 NC_013124.1 1672085 1672849 R PFAM: protein of unknown function DUF124; KEGG: azc:AZC_0415 hypothetical protein; hypothetical protein complement(1672085..1672849) Acidimicrobium ferrooxidans DSM 10331 8323678 YP_003110183.1 CDS Afer_1588 NC_013124.1 1672925 1673281 R hypothetical protein complement(1672925..1673281) Acidimicrobium ferrooxidans DSM 10331 8323679 YP_003110184.1 CDS Afer_1589 NC_013124.1 1673278 1674567 R KEGG: dar:Daro_2364 phosphopyruvate hydratase; TIGRFAM: enolase; PFAM: enolase; enolase complement(1673278..1674567) Acidimicrobium ferrooxidans DSM 10331 8323680 YP_003110185.1 CDS Afer_1590 NC_013124.1 1674596 1675888 R PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: gvi:gll2594 tetrapyrrole methylase family protein / MazG family protein; MazG nucleotide pyrophosphohydrolase complement(1674596..1675888) Acidimicrobium ferrooxidans DSM 10331 8323681 YP_003110186.1 CDS Afer_1591 NC_013124.1 1676008 1676511 R KEGG: predicted protein; hypothetical protein complement(1676008..1676511) Acidimicrobium ferrooxidans DSM 10331 8323682 YP_003110187.1 CDS Afer_1592 NC_013124.1 1676731 1676859 R hypothetical protein complement(1676731..1676859) Acidimicrobium ferrooxidans DSM 10331 8323683 YP_003110188.1 CDS Afer_1593 NC_013124.1 1677075 1678088 R PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase; KEGG: dra:DR_1063 peptidyl-prolyl cis-trans isomerase C; PpiC-type peptidyl-prolyl cis-trans isomerase complement(1677075..1678088) Acidimicrobium ferrooxidans DSM 10331 8323684 YP_003110189.1 CDS Afer_1594 NC_013124.1 1678116 1681511 R KEGG: fal:FRAAL6237 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: DEAD/DEAH box helicase domain protein; transcription factor CarD; TRCF domain protein; helicase domain protein; SMART: DEAD-like helicases ; helicase domain protein; transcription-repair coupling factor complement(1678116..1681511) Acidimicrobium ferrooxidans DSM 10331 8323685 YP_003110190.1 CDS Afer_1595 NC_013124.1 1681489 1682067 R KEGG: mmi:MMAR_4473 peptidyl-tRNA hydrolase Pth; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase; peptidyl-tRNA hydrolase complement(1681489..1682067) Acidimicrobium ferrooxidans DSM 10331 8323686 YP_003110191.1 CDS Afer_1596 NC_013124.1 1682096 1682614 R TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5; PFAM: ribosomal protein L25; KEGG: tbd:Tbd_0388 50S ribosomal protein L25/general stress protein Ctc; ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 complement(1682096..1682614) Acidimicrobium ferrooxidans DSM 10331 8323687 YP_003110192.1 CDS Afer_1597 NC_013124.1 1682698 1683669 R KEGG: ace:Acel_1946 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase; ribose-phosphate pyrophosphokinase complement(1682698..1683669) Acidimicrobium ferrooxidans DSM 10331 8323688 YP_003110193.1 CDS Afer_1598 NC_013124.1 1684616 1685230 R PFAM: metallophosphoesterase; KEGG: mpa:MAP0859c hypothetical protein; metallophosphoesterase complement(1684616..1685230) Acidimicrobium ferrooxidans DSM 10331 8323689 YP_003110194.1 CDS Afer_1599 NC_013124.1 1685728 1686822 R PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; KEGG: tfu:Tfu_0414 UDP-N-acetylglucosamine pyrophosphorylase / glucosamine-1-phosphate N- acetyltransferase; Nucleotidyl transferase complement(1685728..1686822) Acidimicrobium ferrooxidans DSM 10331 8323690 YP_003110195.1 CDS Afer_1600 NC_013124.1 1686846 1688405 R KEGG: glycoside hydrolase family 5 protein; hypothetical protein complement(1686846..1688405) Acidimicrobium ferrooxidans DSM 10331 8323691 YP_003110196.1 CDS Afer_1601 NC_013124.1 1688498 1690018 D thiamine-pyrophosphate requiring enzyme; hypothetical protein 1688498..1690018 Acidimicrobium ferrooxidans DSM 10331 8323692 YP_003110197.1 CDS Afer_1602 NC_013124.1 1690055 1692121 R PFAM: peptidase S9 prolyl oligopeptidase active site domain protein; peptidase S9B dipeptidylpeptidase IV domain protein; KEGG: hypothetical protein; K01278 dipeptidyl- peptidase 4; peptidase S9 prolyl oligopeptidase active site domain-containing protein complement(1690055..1692121) Acidimicrobium ferrooxidans DSM 10331 8323693 YP_003110198.1 CDS Afer_1603 NC_013124.1 1692457 1692975 R PFAM: MaoC domain protein dehydratase; KEGG: saq:Sare_0676 dehydratase; MaoC domain-containing protein dehydratase complement(1692457..1692975) Acidimicrobium ferrooxidans DSM 10331 8323694 YP_003110199.1 CDS Afer_1604 NC_013124.1 1692980 1693465 R KEGG: ace:Acel_1395 hypothetical protein; hypothetical protein complement(1692980..1693465) Acidimicrobium ferrooxidans DSM 10331 8323695 YP_003110200.1 CDS Afer_1605 NC_013124.1 1693513 1694274 R PFAM: Abortive infection protein; KEGG: mtu:Rv0658c integral membrane protein; abortive infection protein complement(1693513..1694274) Acidimicrobium ferrooxidans DSM 10331 8323696 YP_003110201.1 CDS Afer_1606 NC_013124.1 1694496 1696478 D KEGG: dde:Dde_1513 FtsH peptidase; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: AAA ATPase central domain protein; peptidase M41; peptidase M41 FtsH extracellular; ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; ATP-dependent metalloprotease FtsH 1694496..1696478 Acidimicrobium ferrooxidans DSM 10331 8323697 YP_003110202.1 CDS Afer_1607 NC_013124.1 1696486 1697349 D PFAM: YdjC family protein; KEGG: ttj:TTHB029 hypothetical protein; YdjC family protein 1696486..1697349 Acidimicrobium ferrooxidans DSM 10331 8323698 YP_003110203.1 CDS Afer_1608 NC_013124.1 1697273 1697668 R KEGG: csa:Csal_1939 sterol-binding; hypothetical protein complement(1697273..1697668) Acidimicrobium ferrooxidans DSM 10331 8323699 YP_003110204.1 CDS Afer_1609 NC_013124.1 1697679 1698572 R PFAM: LmbE family protein; KEGG: sen:SACE_0909 N- acetylglucosaminylphosphatidylinositol deacetylase; LmbE family protein complement(1697679..1698572) Acidimicrobium ferrooxidans DSM 10331 8323700 YP_003110205.1 CDS Afer_1610 NC_013124.1 1698627 1699658 R KEGG: GK23692; hypothetical protein complement(1698627..1699658) Acidimicrobium ferrooxidans DSM 10331 8323701 YP_003110206.1 CDS Afer_1611 NC_013124.1 1699682 1702843 R KEGG: fal:FRAAL2180 error-prone DNA polymerase; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha complement(1699682..1702843) Acidimicrobium ferrooxidans DSM 10331 8323702 YP_003110207.1 CDS Afer_1612 NC_013124.1 1702816 1704369 R KEGG: fal:FRAAL2179 DNA-directed DNA polymerase; DNA-directed DNA polymerase complement(1702816..1704369) Acidimicrobium ferrooxidans DSM 10331 8323703 YP_003110208.1 CDS Afer_1613 NC_013124.1 1704366 1704953 R KEGG: cur:cur_0403 hypothetical protein; hypothetical protein complement(1704366..1704953) Acidimicrobium ferrooxidans DSM 10331 8323704 YP_003110209.1 CDS Afer_1614 NC_013124.1 1704983 1705735 R PFAM: UbiC transcription regulator-associated domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: dsy:DSY4747 hypothetical protein; GntR family transcriptional regulator complement(1704983..1705735) Acidimicrobium ferrooxidans DSM 10331 8323705 YP_003110210.1 CDS Afer_1615 NC_013124.1 1706030 1707220 R PFAM: 3'-5' exonuclease; HRDC domain protein; SMART: 3'-5' exonuclease; HRDC domain protein; KEGG: mca:MCA2378 ribonuclease D; 3'-5' exonuclease complement(1706030..1707220) Acidimicrobium ferrooxidans DSM 10331 8323706 YP_003110211.1 CDS Afer_1616 NC_013124.1 1707874 1708281 D PFAM: histidine triad (HIT) protein; KEGG: scl:sce6886 histidine triad, HIT-like protein; histidine triad (HIT) protein 1707874..1708281 Acidimicrobium ferrooxidans DSM 10331 8323707 YP_003110212.1 CDS Afer_1620 NC_013124.1 1709907 1710299 R PFAM: PilT protein domain protein; KEGG: mva:Mvan_1717 PilT domain-containing protein; PilT protein domain-containing protein complement(1709907..1710299) Acidimicrobium ferrooxidans DSM 10331 8323711 YP_003110213.1 CDS Afer_1621 NC_013124.1 1710299 1710574 R TIGRFAM: prevent-host-death family protein; PFAM: protein of unknown function DUF172; KEGG: mbb:BCG_3454c hypothetical protein; prevent-host-death family protein complement(1710299..1710574) Acidimicrobium ferrooxidans DSM 10331 8323712 YP_003110214.1 CDS Afer_1624 NC_013124.1 1711461 1712696 R KEGG: rrs:RoseRS_2069 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib; RNA- binding S4 domain protein; tyrosyl-tRNA synthetase complement(1711461..1712696) Acidimicrobium ferrooxidans DSM 10331 8323715 YP_003110215.1 CDS Afer_1625 NC_013124.1 1712709 1714349 R KEGG: gka:GK2875 2-succinyl-6-hydroxy-2,4- cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase; 2-oxoglutarate decarboxylase complement(1712709..1714349) Acidimicrobium ferrooxidans DSM 10331 8323716 YP_003110216.1 CDS Afer_1626 NC_013124.1 1714385 1715221 D KEGG: cch:Cag_1720 thioesterase, menaquinone synthesis protein; thioesterase, menaquinone synthesis protein 1714385..1715221 Acidimicrobium ferrooxidans DSM 10331 8323717 YP_003110217.1 CDS Afer_1627 NC_013124.1 1715218 1716105 R TIGRFAM: 1,4-dihydroxy-2-naphthoate octaprenyltransferase; PFAM: UbiA prenyltransferase; KEGG: tfu:Tfu_0788 1,4-dihydroxy-2-naphthoate octaprenyltransferase; 1,4-dihydroxy-2-naphthoateoctaprenyltransferase complement(1715218..1716105) Acidimicrobium ferrooxidans DSM 10331 8323718 YP_003110218.1 CDS Afer_1628 NC_013124.1 1716164 1717351 D PFAM: AMP-dependent synthetase and ligase; KEGG: mkm:Mkms_0740 O-succinylbenzoic acid--CoA ligase; AMP-dependent synthetase and ligase 1716164..1717351 Acidimicrobium ferrooxidans DSM 10331 8323719 YP_003110219.1 CDS Afer_1629 NC_013124.1 1717348 1718805 R PFAM: amino acid permease-associated region; KEGG: rso:RS02383 amino acid transporter transmembrane protein; amino acid permease-associated protein complement(1717348..1718805) Acidimicrobium ferrooxidans DSM 10331 8323720 YP_003110220.1 CDS Afer_1630 NC_013124.1 1718934 1719680 R PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cur:cur_1752 dehydrogenase related to short- chain alcohol dehydrogenases; short-chain dehydrogenase/reductase SDR complement(1718934..1719680) Acidimicrobium ferrooxidans DSM 10331 8323721 YP_003110221.1 CDS Afer_1631 NC_013124.1 1719747 1721699 D PFAM: protein of unknown function DUF255; KEGG: nfa:nfa48210 hypothetical protein; hypothetical protein 1719747..1721699 Acidimicrobium ferrooxidans DSM 10331 8323722 YP_003110222.1 CDS Afer_1632 NC_013124.1 1721971 1722585 D hypothetical protein 1721971..1722585 Acidimicrobium ferrooxidans DSM 10331 8323723 YP_003110223.1 CDS Afer_1633 NC_013124.1 1722615 1723199 D TIGRFAM: uncharacterized peroxidase-related enzyme; alkylhydroperoxidase like protein, AhpD family; PFAM: Carboxymuconolactone decarboxylase; KEGG: bja:bll3817 hypothetical protein; peroxidase-like protein 1722615..1723199 Acidimicrobium ferrooxidans DSM 10331 8323724 YP_003110224.1 CDS Afer_1635 NC_013124.1 1724970 1725524 D TIGRFAM: DNA binding domain protein, excisionase family; PFAM: regulatory protein MerR; KEGG: fra:Francci3_1856 excisionase/Xis, DNA- binding; excisionase family DNA binding domain-containing protein 1724970..1725524 Acidimicrobium ferrooxidans DSM 10331 8323726 YP_003110225.1 CDS Afer_1636 NC_013124.1 1725529 1726089 D KEGG: sbl:Sbal_4436 hypothetical protein; hypothetical protein 1725529..1726089 Acidimicrobium ferrooxidans DSM 10331 8323727 YP_003110226.1 CDS Afer_1637 NC_013124.1 1726886 1727332 R PFAM: protein of unknown function DUF1707; KEGG: sco:SCO2893 hypothetical protein; hypothetical protein complement(1726886..1727332) Acidimicrobium ferrooxidans DSM 10331 8323728 YP_003110227.1 CDS Afer_1638 NC_013124.1 1727456 1731025 D KEGG: ace:Acel_1054 DNA polymerase III subunit alpha; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein; DNA polymerase III subunit alpha 1727456..1731025 Acidimicrobium ferrooxidans DSM 10331 8323729 YP_003110228.1 CDS Afer_1639 NC_013124.1 1731015 1731719 D PFAM: peptidase S51 dipeptidase E; KEGG: smt:Smal_0740 peptidase S51 dipeptidase E; peptidase S51 dipeptidase E 1731015..1731719 Acidimicrobium ferrooxidans DSM 10331 8323730 YP_003110229.1 CDS Afer_1640 NC_013124.1 1731735 1733147 R TIGRFAM: glutamate decarboxylase; PFAM: Pyridoxal-dependent decarboxylase; KEGG: bca:BCE_2691 glutamate decarboxylase; glutamate decarboxylase complement(1731735..1733147) Acidimicrobium ferrooxidans DSM 10331 8323731 YP_003110230.1 CDS Afer_1641 NC_013124.1 1733518 1735488 R PFAM: AMP-dependent synthetase and ligase; KEGG: tac:Ta0769 acetyl-coenzyme A synthetase; AMP-dependent synthetase and ligase complement(1733518..1735488) Acidimicrobium ferrooxidans DSM 10331 8323732 YP_003110231.1 CDS Afer_1642 NC_013124.1 1735524 1736732 R KEGG: rha:RHA1_ro04406 amidase; hypothetical protein complement(1735524..1736732) Acidimicrobium ferrooxidans DSM 10331 8323733 YP_003110232.1 CDS Afer_1643 NC_013124.1 1736742 1737422 R hypothetical protein complement(1736742..1737422) Acidimicrobium ferrooxidans DSM 10331 8323734 YP_003110233.1 CDS Afer_1644 NC_013124.1 1737516 1737983 D TIGRFAM: 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I; KEGG: hpa:HPAG1_1339 7-cyano-7-deazaguanine reductase; 7-cyano-7-deazaguanine reductase 1737516..1737983 Acidimicrobium ferrooxidans DSM 10331 8323735 YP_003110234.1 CDS Afer_1645 NC_013124.1 1737980 1738552 D PFAM: protein of unknown function DUF165; KEGG: kra:Krad_4383 hypothetical protein; hypothetical protein 1737980..1738552 Acidimicrobium ferrooxidans DSM 10331 8323736 YP_003110235.1 CDS Afer_1646 NC_013124.1 1738549 1739496 D PFAM: protein of unknown function DUF6 transmembrane; KEGG: gtn:GTNG_1176 transporter, EamA family; hypothetical protein 1738549..1739496 Acidimicrobium ferrooxidans DSM 10331 8323737 YP_003110236.1 CDS Afer_1647 NC_013124.1 1740085 1740447 R PFAM: Resolvase domain; KEGG: ppd:Ppro_1125 resolvase domain-containing protein; resolvase domain-containing protein complement(1740085..1740447) Acidimicrobium ferrooxidans DSM 10331 8323738 YP_003110237.1 CDS Afer_1648 NC_013124.1 1740464 1740904 R TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: rca:Rcas_2210 death-on-curing family protein; death-on-curing family protein complement(1740464..1740904) Acidimicrobium ferrooxidans DSM 10331 8323739 YP_003110238.1 CDS Afer_1649 NC_013124.1 1741185 1741583 R KEGG: rci:RCIX1146 hypothetical protein; hypothetical protein complement(1741185..1741583) Acidimicrobium ferrooxidans DSM 10331 8323740 YP_003110239.1 CDS Afer_1650 NC_013124.1 1741693 1742190 R hypothetical protein complement(1741693..1742190) Acidimicrobium ferrooxidans DSM 10331 8323741 YP_003110240.1 CDS Afer_1651 NC_013124.1 1742252 1742500 R hypothetical protein complement(1742252..1742500) Acidimicrobium ferrooxidans DSM 10331 8323742 YP_003110241.1 CDS Afer_1652 NC_013124.1 1742666 1742980 R PFAM: CopG domain protein DNA-binding domain protein; CopG domain-containing protein DNA-binding domain-containing protein complement(1742666..1742980) Acidimicrobium ferrooxidans DSM 10331 8323743 YP_003110242.1 CDS Afer_1653 NC_013124.1 1742977 1743273 R hypothetical protein complement(1742977..1743273) Acidimicrobium ferrooxidans DSM 10331 8323744 YP_003110243.1 CDS Afer_1654 NC_013124.1 1743533 1744555 D KEGG: mkm:Mkms_5755 transposase, mutator type; hypothetical protein 1743533..1744555 Acidimicrobium ferrooxidans DSM 10331 8323745 YP_003110244.1 CDS Afer_1655 NC_013124.1 1744560 1744829 D KEGG: mva:Mvan_0585 transposase, mutator type; hypothetical protein 1744560..1744829 Acidimicrobium ferrooxidans DSM 10331 8323746 YP_003110245.1 CDS Afer_1656 NC_013124.1 1745009 1745224 D hypothetical protein 1745009..1745224 Acidimicrobium ferrooxidans DSM 10331 8323747 YP_003110246.1 CDS Afer_1657 NC_013124.1 1745265 1745771 R PFAM: methylpurine-DNA glycosylase (MPG); KEGG: rpt:Rpal_2856 DNA-3-methyladenine glycosylase; methylpurine-DNA glycosylase (MPG) complement(1745265..1745771) Acidimicrobium ferrooxidans DSM 10331 8323748 YP_003110247.1 CDS Afer_1658 NC_013124.1 1745743 1747143 R KEGG: rca:Rcas_3075 argininosuccinate lyase; TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; argininosuccinate lyase complement(1745743..1747143) Acidimicrobium ferrooxidans DSM 10331 8323749 YP_003110248.1 CDS Afer_1659 NC_013124.1 1747140 1748336 R KEGG: fra:Francci3_3169 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase; ExsB family protein; argininosuccinate synthase complement(1747140..1748336) Acidimicrobium ferrooxidans DSM 10331 8323750 YP_003110249.1 CDS Afer_1660 NC_013124.1 1748492 1748974 R TIGRFAM: arginine repressor; PFAM: arginine repressor; KEGG: msm:MSMEG_3771 arginine repressor; arginine repressor, ArgR complement(1748492..1748974) Acidimicrobium ferrooxidans DSM 10331 8323751 YP_003110250.1 CDS Afer_1661 NC_013124.1 1748980 1749924 R PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; KEGG: ace:Acel_1259 ornithine carbamoyltransferase; aspartate/ornithine carbamoyltransferase Asp/Orn- binding region complement(1748980..1749924) Acidimicrobium ferrooxidans DSM 10331 8323752 YP_003110251.1 CDS Afer_1662 NC_013124.1 1749927 1751093 R PFAM: aminotransferase class-III; KEGG: art:Arth_1499 acetylornithine and succinylornithine aminotransferases; class III aminotransferase complement(1749927..1751093) Acidimicrobium ferrooxidans DSM 10331 8323753 YP_003110252.1 CDS Afer_1663 NC_013124.1 1751090 1751965 R TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase; KEGG: predicted protein; K00930 acetylglutamate kinase; acetylglutamate kinase complement(1751090..1751965) Acidimicrobium ferrooxidans DSM 10331 8323754 YP_003110253.1 CDS Afer_1664 NC_013124.1 1751962 1753149 R KEGG: sen:SACE_5261 bifunctional ornithine acetyltransferase/N-acetylglutamate synthase protein; TIGRFAM: arginine biosynthesis bifunctional protein ArgJ; PFAM: arginine biosynthesis protein ArgJ; arginine biosynthesis bifunctional protein ArgJ complement(1751962..1753149) Acidimicrobium ferrooxidans DSM 10331 8323755 YP_003110254.1 CDS Afer_1665 NC_013124.1 1753140 1754153 R KEGG: pmy:Pmen_3933 N-acetyl-gamma-glutamyl- phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding; Semialdehyde dehydrogenase dimerization region; N-acetyl-gamma-glutamyl-phosphate reductase complement(1753140..1754153) Acidimicrobium ferrooxidans DSM 10331 8323756 YP_003110255.1 CDS Afer_1666 NC_013124.1 1754247 1754618 D PFAM: protein of unknown function DUF805; KEGG: saq:Sare_1608 hypothetical protein; hypothetical protein 1754247..1754618 Acidimicrobium ferrooxidans DSM 10331 8323757 YP_003110256.1 CDS Afer_1667 NC_013124.1 1754755 1756080 D KEGG: stp:Strop_4549 hypothetical protein; hypothetical protein 1754755..1756080 Acidimicrobium ferrooxidans DSM 10331 8323758 YP_003110257.1 CDS Afer_1668 NC_013124.1 1756184 1757710 D PFAM: protein of unknown function DUF404; protein of unknown function DUF407; KEGG: fre:Franean1_2098 hypothetical protein; hypothetical protein 1756184..1757710 Acidimicrobium ferrooxidans DSM 10331 8323759 YP_003110258.1 CDS Afer_1669 NC_013124.1 1757707 1758648 D PFAM: protein of unknown function DUF403; KEGG: cms:CMS_0253 hypothetical protein; hypothetical protein 1757707..1758648 Acidimicrobium ferrooxidans DSM 10331 8323760 YP_003110259.1 CDS Afer_1670 NC_013124.1 1758645 1759478 D PFAM: transglutaminase; transglutaminase; SMART: transglutaminase; KEGG: rha:RHA1_ro01282 transglutaminase-like enzyme; transglutaminase 1758645..1759478 Acidimicrobium ferrooxidans DSM 10331 8323761 YP_003110260.1 CDS Afer_1671 NC_013124.1 1760162 1760566 R PFAM: protein of unknown function DUF1634; KEGG: sus:Acid_5631 hypothetical protein; hypothetical protein complement(1760162..1760566) Acidimicrobium ferrooxidans DSM 10331 8323762 YP_003110261.1 CDS Afer_1672 NC_013124.1 1760563 1761408 R PFAM: protein of unknown function DUF81; KEGG: mxa:MXAN_4782 hypothetical protein; hypothetical protein complement(1760563..1761408) Acidimicrobium ferrooxidans DSM 10331 8323763 YP_003110262.1 CDS Afer_1673 NC_013124.1 1761430 1763805 R KEGG: ade:Adeh_1971 phenylalanyl-tRNA synthetase beta subunit; TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; phenylalanyl-tRNA synthetase subunit beta complement(1761430..1763805) Acidimicrobium ferrooxidans DSM 10331 8323764 YP_003110263.1 CDS Afer_1674 NC_013124.1 1763802 1764902 R TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein; KEGG: afw:Anae109_1883 phenylalanyl-tRNA synthetase, alpha subunit; phenylalanyl-tRNA synthetase subunit alpha complement(1763802..1764902) Acidimicrobium ferrooxidans DSM 10331 8323765 YP_003110264.1 CDS Afer_1675 NC_013124.1 1764944 1765642 R PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: sru:SRU_0504 RNA methyltransferase; tRNA/rRNA methyltransferase SpoU complement(1764944..1765642) Acidimicrobium ferrooxidans DSM 10331 8323766 YP_003110265.1 CDS Afer_1676 NC_013124.1 1765707 1766075 R TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: kra:Krad_3167 ribosomal protein L20; 50S ribosomal protein L20 complement(1765707..1766075) Acidimicrobium ferrooxidans DSM 10331 8323767 YP_003110266.1 CDS Afer_1677 NC_013124.1 1766096 1766293 R TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: dau:Daud_1382 ribosomal protein L35; 50S ribosomal protein L35 complement(1766096..1766293) Acidimicrobium ferrooxidans DSM 10331 8323768 YP_003110267.1 CDS Afer_1678 NC_013124.1 1766488 1767000 R TIGRFAM: translation initiation factor IF-3; PFAM: initiation factor 3; KEGG: saq:Sare_1875 translation initiation factor IF-3; translation initiation factor IF-3 complement(1766488..1767000) Acidimicrobium ferrooxidans DSM 10331 8323769 YP_003110268.1 CDS Afer_1679 NC_013124.1 1767145 1767528 R hypothetical protein complement(1767145..1767528) Acidimicrobium ferrooxidans DSM 10331 8323770 YP_003110269.1 CDS Afer_1680 NC_013124.1 1767554 1767832 R hypothetical protein complement(1767554..1767832) Acidimicrobium ferrooxidans DSM 10331 8323771 YP_003110270.1 CDS hisG NC_013124.1 1767839 1768714 R long form of enzyme; catalyzes the formation of N'-5'-phosphoribosyl-ATP from phosphoribosyl pyrophosphate; crucial role in histidine biosynthesis; forms active dimers and inactive hexamers which is dependent on concentration of substrates and inhibitors; ATP phosphoribosyltransferase complement(1767839..1768714) Acidimicrobium ferrooxidans DSM 10331 8323772 YP_003110271.1 CDS Afer_1682 NC_013124.1 1768708 1769196 R KEGG: ent:Ent638_0883 riboflavin synthase subunit beta; TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase; 6,7-dimethyl-8-ribityllumazine synthase complement(1768708..1769196) Acidimicrobium ferrooxidans DSM 10331 8323773 YP_003110272.1 CDS Afer_1683 NC_013124.1 1769193 1770446 R KEGG: Os02g0572400; hypothetical protein ; K01497 GTP cyclohydrolase II; TIGRFAM: GTP cyclohydrolase II; 3,4-dihydroxy-2- butanone 4-phosphate synthase; PFAM: GTP cyclohydrolase II; 34-dihydroxy-2- butanone 4-phosphate synthase; GTP cyclohydrolase II complement(1769193..1770446) Acidimicrobium ferrooxidans DSM 10331 8323774 YP_003110273.1 CDS Afer_1684 NC_013124.1 1770443 1771033 R PFAM: Lumazine-binding protein; KEGG: tfu:Tfu_1078 riboflavin synthase subunit alpha; Lumazine-binding protein complement(1770443..1771033) Acidimicrobium ferrooxidans DSM 10331 8323775 YP_003110274.1 CDS Afer_1685 NC_013124.1 1771084 1772136 R TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding; KEGG: gme:Gmet_1624 5-amino-6-(5- phosphoribosylamino)uracil reductase / diaminohydroxyphosphoribosylaminopyrimidine deaminase; riboflavin biosynthesis protein RibD complement(1771084..1772136) Acidimicrobium ferrooxidans DSM 10331 8323776 YP_003110275.1 CDS Afer_1686 NC_013124.1 1772133 1772624 R TIGRFAM: molybdenum cofactor synthesis domain protein; PFAM: molybdopterin binding domain; KEGG: fra:Francci3_4037 molybdopterin adenylyltransferase; molybdenum cofactor synthesis domain-containing protein complement(1772133..1772624) Acidimicrobium ferrooxidans DSM 10331 8323777 YP_003110276.1 CDS Afer_1687 NC_013124.1 1772625 1773515 R PFAM: formyl transferase domain protein; KEGG: nca:Noca_2442 methionyl-tRNA formyltransferase; methionyl-tRNA formyltransferase complement(1772625..1773515) Acidimicrobium ferrooxidans DSM 10331 8323778 YP_003110277.1 CDS Afer_1688 NC_013124.1 1773518 1774012 R KEGG: ace:Acel_1279 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase; peptide deformylase complement(1773518..1774012) Acidimicrobium ferrooxidans DSM 10331 8323779 YP_003110278.1 CDS Afer_1689 NC_013124.1 1774048 1775172 R KEGG: GK21128; hypothetical protein complement(1774048..1775172) Acidimicrobium ferrooxidans DSM 10331 8323780 YP_003110279.1 CDS Afer_1690 NC_013124.1 1775173 1776933 R KEGG: lch:Lcho_0048 electron transport protein SCO1/SenC; hypothetical protein complement(1775173..1776933) Acidimicrobium ferrooxidans DSM 10331 8323781 YP_003110280.1 CDS Afer_1691 NC_013124.1 1777062 1778807 R KEGG: afw:Anae109_0770 primosomal protein N'; Primosomal protein N' complement(1777062..1778807) Acidimicrobium ferrooxidans DSM 10331 8323782 YP_003110281.1 CDS Afer_1692 NC_013124.1 1778809 1780002 R KEGG: kra:Krad_2989 methionine adenosyltransferase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase; S-adenosylmethionine synthetase complement(1778809..1780002) Acidimicrobium ferrooxidans DSM 10331 8323783 YP_003110282.1 CDS Afer_1693 NC_013124.1 1780035 1781237 R TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein; KEGG: ace:Acel_1291 phosphopantothenate-cysteine ligase / phosphopantothenoylcysteine decarboxylase; phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase complement(1780035..1781237) Acidimicrobium ferrooxidans DSM 10331 8323784 YP_003110283.1 CDS Afer_1694 NC_013124.1 1781242 1781526 R TIGRFAM: DNA-directed RNA polymerase, omega subunit; KEGG: fra:Francci3_3194 DNA-directed RNA polymerase subunit omega; DNA-directed RNA polymerase subunit omega complement(1781242..1781526) Acidimicrobium ferrooxidans DSM 10331 8323785 YP_003110284.1 CDS Afer_1695 NC_013124.1 1781571 1782113 R KEGG: syw:SYNW1837 guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region; Guanylate kinase complement(1781571..1782113) Acidimicrobium ferrooxidans DSM 10331 8323786 YP_003110285.1 CDS Afer_1696 NC_013124.1 1782110 1782430 R KEGG: saq:Sare_1853 hypothetical protein; hypothetical protein complement(1782110..1782430) Acidimicrobium ferrooxidans DSM 10331 8323787 YP_003110286.1 CDS Afer_1697 NC_013124.1 1782489 1783190 R KEGG: nfa:pnf11210 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase; orotidine 5'-phosphate decarboxylase complement(1782489..1783190) Acidimicrobium ferrooxidans DSM 10331 8323788 YP_003110287.1 CDS Afer_1698 NC_013124.1 1783187 1784116 R TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate dehydrogenase; KEGG: gur:Gura_2150 dihydroorotate dehydrogenase family protein; dihydroorotate dehydrogenase family protein complement(1783187..1784116) Acidimicrobium ferrooxidans DSM 10331 8323789 YP_003110288.1 CDS Afer_1699 NC_013124.1 1784117 1787419 R TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; MGS domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; Carbamoyl- phosphate synthetase large chain domain protein; KEGG: gvi:gll1769 carbamoyl phosphate synthetase large chain; carbamoyl-phosphate synthase, large subunit complement(1784117..1787419) Acidimicrobium ferrooxidans DSM 10331 8323790 YP_003110289.1 CDS Afer_1700 NC_013124.1 1787412 1788557 R TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: glutamine amidotransferase class-I; Carbamoyl- phosphate synthase small chain; KEGG: ade:Adeh_1620 carbamoyl phosphate synthase small subunit; carbamoyl-phosphate synthase, small subunit complement(1787412..1788557) Acidimicrobium ferrooxidans DSM 10331 8323791 YP_003110290.1 CDS Afer_1701 NC_013124.1 1788544 1789875 R PFAM: amidohydrolase; KEGG: ser:SERP0767 dihydroorotase; amidohydrolase complement(1788544..1789875) Acidimicrobium ferrooxidans DSM 10331 8323792 YP_003110291.1 CDS Afer_1702 NC_013124.1 1789863 1790795 R PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; KEGG: ttj:TTHA0782 aspartate carbamoyltransferase catalytic subunit; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain-containing protein complement(1789863..1790795) Acidimicrobium ferrooxidans DSM 10331 8323793 YP_003110292.1 CDS Afer_1703 NC_013124.1 1790792 1791301 R PFAM: phosphoribosyltransferase; KEGG: tfu:Tfu_1053 pyrimidine regulatory protein PyrR; Uracil phosphoribosyltransferase complement(1790792..1791301) Acidimicrobium ferrooxidans DSM 10331 8323794 YP_003110293.1 CDS Afer_1704 NC_013124.1 1791480 1791605 R hypothetical protein complement(1791480..1791605) Acidimicrobium ferrooxidans DSM 10331 8323795 YP_003110294.1 CDS Afer_1705 NC_013124.1 1791752 1792519 R KEGG: sus:Acid_6905 hypothetical protein; hypothetical protein complement(1791752..1792519) Acidimicrobium ferrooxidans DSM 10331 8323796 YP_003110295.1 CDS Afer_1706 NC_013124.1 1792661 1793314 R KEGG: bpm:BURPS1710b_0944 cytochrome c oxidase subunit I; hypothetical protein complement(1792661..1793314) Acidimicrobium ferrooxidans DSM 10331 8323797 YP_003110296.1 CDS Afer_1707 NC_013124.1 1793314 1795263 R PFAM: cytochrome c oxidase subunit I; KEGG: syp:SYNPCC7002_A0726 cytochrome oxidase II large subunit; Cytochrome-c oxidase complement(1793314..1795263) Acidimicrobium ferrooxidans DSM 10331 8323798 YP_003110297.1 CDS Afer_1708 NC_013124.1 1795289 1796251 R PFAM: cytochrome c oxidase subunit II; KEGG: gvi:glr0739 cytochrome c oxidase subunit II; cytochrome c oxidase subunit II complement(1795289..1796251) Acidimicrobium ferrooxidans DSM 10331 8323799 YP_003110298.1 CDS Afer_1709 NC_013124.1 1796248 1796961 R KEGG: tvo:TVN0360 hypothetical protein; hypothetical protein complement(1796248..1796961) Acidimicrobium ferrooxidans DSM 10331 8323800 YP_003110299.1 CDS Afer_1710 NC_013124.1 1797029 1797655 R PFAM: Redoxin domain protein; alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; Thioredoxin domain; KEGG: ttj:TTHA1728 hypothetical protein; Redoxin domain-containing protein complement(1797029..1797655) Acidimicrobium ferrooxidans DSM 10331 8323801 YP_003110300.1 CDS Afer_1711 NC_013124.1 1797652 1798545 R TIGRFAM: protoheme IX farnesyltransferase; PFAM: UbiA prenyltransferase; KEGG: kra:Krad_2921 protoheme IX farnesyltransferase; protoheme IX farnesyltransferase complement(1797652..1798545) Acidimicrobium ferrooxidans DSM 10331 8323802 YP_003110301.1 CDS Afer_1712 NC_013124.1 1798662 1799837 D PFAM: peptidase M24; KEGG: cef:CE1738 cytoplasmic peptidase; peptidase M24 1798662..1799837 Acidimicrobium ferrooxidans DSM 10331 8323803 YP_003110302.1 CDS Afer_1713 NC_013124.1 1799909 1800478 D TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor P/YeiP protein; Elongation factor KOW domain protein; KEGG: tfu:Tfu_1093 elongation factor P; translation elongation factor P 1799909..1800478 Acidimicrobium ferrooxidans DSM 10331 8323804 YP_003110303.1 CDS Afer_1714 NC_013124.1 1800471 1800908 D TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: kra:Krad_3008 NusB antitermination factor; NusB antitermination factor 1800471..1800908 Acidimicrobium ferrooxidans DSM 10331 8323805 YP_003110304.1 CDS Afer_1715 NC_013124.1 1800905 1801573 R hypothetical protein complement(1800905..1801573) Acidimicrobium ferrooxidans DSM 10331 8323806 YP_003110305.1 CDS Afer_1716 NC_013124.1 1801661 1802122 R KEGG: sth:STH1866 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type II; PFAM: dehydroquinase class II; 3-dehydroquinate dehydratase, type II complement(1801661..1802122) Acidimicrobium ferrooxidans DSM 10331 8323807 YP_003110306.1 CDS Afer_1717 NC_013124.1 1802119 1803183 R PFAM: 3-dehydroquinate synthase; KEGG: saq:Sare_1253 3-dehydroquinate synthase; 3-dehydroquinate synthase complement(1802119..1803183) Acidimicrobium ferrooxidans DSM 10331 8323808 YP_003110307.1 CDS Afer_1718 NC_013124.1 1803183 1804361 R KEGG: stp:Strop_1845 chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase; chorismate synthase complement(1803183..1804361) Acidimicrobium ferrooxidans DSM 10331 8323809 YP_003110308.1 CDS Afer_1719 NC_013124.1 1804366 1805031 R KEGG: kra:Krad_4652 hypothetical protein; hypothetical protein complement(1804366..1805031) Acidimicrobium ferrooxidans DSM 10331 8323810 YP_003110309.1 CDS Afer_1720 NC_013124.1 1805110 1805829 D KEGG: mul:MUL_4739 phosphotyrosine protein phosphatase PtpB; protein tyrosine/serine phosphatase 1805110..1805829 Acidimicrobium ferrooxidans DSM 10331 8323811 YP_003110310.1 CDS Afer_1721 NC_013124.1 1805910 1806392 R PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: msm:MSMEG_5595 MarR-family protein transcriptional regulator; MarR family transcriptional regulator complement(1805910..1806392) Acidimicrobium ferrooxidans DSM 10331 8323812 YP_003110311.1 CDS Afer_1722 NC_013124.1 1806454 1807005 D PFAM: YceI family protein; KEGG: ace:Acel_0530 YceI family protein; YceI family protein 1806454..1807005 Acidimicrobium ferrooxidans DSM 10331 8323813 YP_003110312.1 CDS Afer_1723 NC_013124.1 1807159 1807773 R PFAM: nitrogen-fixing NifU domain protein; KEGG: pcr:Pcryo_2202 HesB/YadR/YfhF; nitrogen-fixing NifU domain-containing protein complement(1807159..1807773) Acidimicrobium ferrooxidans DSM 10331 8323814 YP_003110313.1 CDS Afer_1724 NC_013124.1 1807813 1809018 D KEGG: ank:AnaeK_1423 protein of unknown function DUF201; hypothetical protein 1807813..1809018 Acidimicrobium ferrooxidans DSM 10331 8323815 YP_003110314.1 CDS Afer_1725 NC_013124.1 1809029 1810345 D PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ade:Adeh_2438 radical SAM family protein; Radical SAM domain-containing protein 1809029..1810345 Acidimicrobium ferrooxidans DSM 10331 8323816 YP_003110315.1 CDS Afer_1726 NC_013124.1 1810342 1812123 D PFAM: UvrD/REP helicase; HRDC domain protein; KEGG: sen:SACE_1092 ATP-dependent DNA helicase; UvrD/REP helicase 1810342..1812123 Acidimicrobium ferrooxidans DSM 10331 8323817 YP_003110316.1 CDS Afer_1727 NC_013124.1 1812120 1812896 R TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ace:Acel_1469 exodeoxyribonuclease III; exodeoxyribonuclease III Xth complement(1812120..1812896) Acidimicrobium ferrooxidans DSM 10331 8323818 YP_003110317.1 CDS Afer_1728 NC_013124.1 1812893 1813321 R PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: rxy:Rxyl_1380 3-hydroxyacyl-[acyl-carrier- protein] dehydratase; beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ complement(1812893..1813321) Acidimicrobium ferrooxidans DSM 10331 8323819 YP_003110318.1 CDS Afer_1729 NC_013124.1 1813400 1813576 R PFAM: Protein of unknown function DUF1059; KEGG: rec:RHECIAT_CH0003208 hypothetical protein; hypothetical protein complement(1813400..1813576) Acidimicrobium ferrooxidans DSM 10331 8323820 YP_003110319.1 CDS Afer_1730 NC_013124.1 1813573 1813749 R hypothetical protein complement(1813573..1813749) Acidimicrobium ferrooxidans DSM 10331 8323821 YP_003110320.1 CDS Afer_1731 NC_013124.1 1813805 1814941 R PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: kra:Krad_2441 diguanylate phosphodiesterase; diguanylate phosphodiesterase complement(1813805..1814941) Acidimicrobium ferrooxidans DSM 10331 8323822 YP_003110321.1 CDS kgd NC_013124.1 1815072 1818905 D kgd; produces succinic semialdehyde; part of alternative pathway from alpha-ketoglutarate to succinate; essential for normal growth; alpha-ketoglutarate decarboxylase 1815072..1818905 Acidimicrobium ferrooxidans DSM 10331 8323823 YP_003110322.1 CDS Afer_1733 NC_013124.1 1818936 1819691 R PFAM: alpha/beta hydrolase fold; KEGG: fre:Franean1_2175 alpha/beta hydrolase fold; alpha/beta hydrolase fold protein complement(1818936..1819691) Acidimicrobium ferrooxidans DSM 10331 8323824 YP_003110323.1 CDS Afer_1734 NC_013124.1 1819745 1821019 D PFAM: diacylglycerol kinase catalytic region; SMART: diacylglycerol kinase catalytic region; KEGG: rxy:Rxyl_1713 hypothetical protein; diacylglycerol kinase catalytic protein 1819745..1821019 Acidimicrobium ferrooxidans DSM 10331 8323825 YP_003110324.1 CDS Afer_1735 NC_013124.1 1821000 1821923 R PFAM: domain of unknown function DUF1731; NAD- dependent epimerase/dehydratase; KEGG: ote:Oter_2666 hypothetical protein; hypothetical protein complement(1821000..1821923) Acidimicrobium ferrooxidans DSM 10331 8323826 YP_003110325.1 CDS Afer_1736 NC_013124.1 1822115 1822546 R PFAM: heat shock protein Hsp20; KEGG: rha:RHA1_ro08348 heat shock protein (18 kDa antigen-like protein); heat shock protein Hsp20 complement(1822115..1822546) Acidimicrobium ferrooxidans DSM 10331 8323827 YP_003110326.1 CDS Afer_1737 NC_013124.1 1822698 1824062 D PFAM: ABC-1 domain protein; KEGG: fal:FRAAL6034 ABC transporter, ATP-binding protein; ABC-1 domain-containing protein 1822698..1824062 Acidimicrobium ferrooxidans DSM 10331 8323828 YP_003110327.1 CDS Afer_1738 NC_013124.1 1824059 1824997 D KEGG: lbr:LVIS_2016 hypothetical protein; hypothetical protein 1824059..1824997 Acidimicrobium ferrooxidans DSM 10331 8323829 YP_003110328.1 CDS Afer_1739 NC_013124.1 1825039 1825968 D PFAM: UbiA prenyltransferase; KEGG: cdi:DIP2196 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; UbiA prenyltransferase 1825039..1825968 Acidimicrobium ferrooxidans DSM 10331 8323830 YP_003110329.1 CDS Afer_1740 NC_013124.1 1825973 1827361 D PFAM: FAD linked oxidase domain protein; KEGG: sco:SCO4842 oxidoreductase; FAD linked oxidase domain-containing protein 1825973..1827361 Acidimicrobium ferrooxidans DSM 10331 8323831 YP_003110330.1 CDS Afer_1741 NC_013124.1 1827371 1828129 D PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sco:SCO4841 short-chain dehydrogenase; short-chain dehydrogenase/reductase SDR 1827371..1828129 Acidimicrobium ferrooxidans DSM 10331 8323832 YP_003110331.1 CDS Afer_1742 NC_013124.1 1828145 1831243 R TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; Two component regulator propeller; KEGG: ace:Acel_0423 SpoIID/LytB domain-containing protein; SpoIID/LytB domain-containing protein complement(1828145..1831243) Acidimicrobium ferrooxidans DSM 10331 8323833 YP_003110332.1 CDS Afer_1743 NC_013124.1 1831382 1832335 D KEGG: azo:azo3908 serine/threonine protein kinase; hypothetical protein 1831382..1832335 Acidimicrobium ferrooxidans DSM 10331 8323834 YP_003110333.1 CDS Afer_1744 NC_013124.1 1832335 1833381 D PFAM: glycosyl transferase group 1; KEGG: mxa:MXAN_4614 glycosyl transferase, group 1 family protein; group 1 glycosyl transferase 1832335..1833381 Acidimicrobium ferrooxidans DSM 10331 8323835 YP_003110334.1 CDS Afer_1745 NC_013124.1 1833378 1834454 D PFAM: glycosyl transferase group 1; KEGG: met:M446_6932 glycosyl transferase group 1; group 1 glycosyl transferase 1833378..1834454 Acidimicrobium ferrooxidans DSM 10331 8323836 YP_003110335.1 CDS Afer_1746 NC_013124.1 1834451 1835602 D PFAM: glycosyl transferase group 1; KEGG: rrs:RoseRS_2677 glycosyl transferase family protein; group 1 glycosyl transferase 1834451..1835602 Acidimicrobium ferrooxidans DSM 10331 8323837 YP_003110336.1 CDS Afer_1747 NC_013124.1 1835583 1836785 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: fal:FRAAL1238 ABC transporter ATP-binding protein (partial match); ABC transporter-like protein complement(1835583..1836785) Acidimicrobium ferrooxidans DSM 10331 8323838 YP_003110337.1 CDS Afer_1748 NC_013124.1 1836788 1837738 R PFAM: ABC-2 type transporter; KEGG: fra:Francci3_0724 hypothetical protein; ABC-2 type transporter complement(1836788..1837738) Acidimicrobium ferrooxidans DSM 10331 8323839 YP_003110338.1 CDS Afer_1749 NC_013124.1 1837747 1838382 R PFAM: peptidase S14 ClpP; KEGG: stp:Strop_3499 endopeptidase Clp; Endopeptidase Clp complement(1837747..1838382) Acidimicrobium ferrooxidans DSM 10331 8323840 YP_003110339.1 CDS Afer_1750 NC_013124.1 1838566 1839132 R TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein; KEGG: sth:STH344 hypothetical protein; RdgB/HAM1 family non-canonical purine NTP pyrophosphatase complement(1838566..1839132) Acidimicrobium ferrooxidans DSM 10331 8323842 YP_003110340.1 CDS Afer_1751 NC_013124.1 1839129 1839845 R KEGG: hha:Hhal_0973 ribonuclease PH; TIGRFAM: ribonuclease PH; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; ribonuclease PH complement(1839129..1839845) Acidimicrobium ferrooxidans DSM 10331 8323843 YP_003110341.1 CDS Afer_1752 NC_013124.1 1839877 1840707 R KEGG: fal:FRAAL1505 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase; glutamate racemase complement(1839877..1840707) Acidimicrobium ferrooxidans DSM 10331 8323844 YP_003110342.1 CDS Afer_1753 NC_013124.1 1840697 1841110 R PFAM: Mov34/MPN/PAD-1 family protein; SMART: Mov34/MPN/PAD-1 family protein; KEGG: sth:STH1150 hypothetical protein; Mov34/MPN/PAD-1 family protein complement(1840697..1841110) Acidimicrobium ferrooxidans DSM 10331 8323845 YP_003110343.1 CDS Afer_1754 NC_013124.1 1841209 1841724 D TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: sfu:Sfum_0771 SsrA-binding protein; SsrA-binding protein 1841209..1841724 Acidimicrobium ferrooxidans DSM 10331 8323846 YP_003110344.1 CDS Afer_1755 NC_013124.1 1842188 1842631 D hypothetical protein 1842188..1842631 Acidimicrobium ferrooxidans DSM 10331 8323848 YP_003110345.1 CDS Afer_1758 NC_013124.1 1843500 1844258 D KEGG: tcx:Tcr_0902 hypothetical protein; hypothetical protein 1843500..1844258 Acidimicrobium ferrooxidans DSM 10331 8323851 YP_003110346.1 CDS Afer_1759 NC_013124.1 1844282 1845316 R KEGG: scl:sce3939 hypothetical protein; hypothetical protein complement(1844282..1845316) Acidimicrobium ferrooxidans DSM 10331 8323852 YP_003110347.1 CDS Afer_1760 NC_013124.1 1845354 1846238 R PFAM: protein of unknown function DUF214; KEGG: tfu:Tfu_2477 cell division protein FtsX; hypothetical protein complement(1845354..1846238) Acidimicrobium ferrooxidans DSM 10331 8323853 YP_003110348.1 CDS Afer_1761 NC_013124.1 1846235 1846930 R KEGG: ace:Acel_1731 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase; cell division ATP-binding protein FtsE complement(1846235..1846930) Acidimicrobium ferrooxidans DSM 10331 8323854 YP_003110349.1 CDS Afer_1762 NC_013124.1 1846995 1848104 R TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: rxy:Rxyl_1620 bacterial peptide chain release factor 2 (bRF-2); peptide chain release factor 2 complement(1846995..1848104) Acidimicrobium ferrooxidans DSM 10331 8323855 YP_003110350.1 CDS Afer_1763 NC_013124.1 1848101 1850719 R TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA Wing and Scaffold; SecA preprotein cross-linking region; KEGG: ace:Acel_1759 preprotein translocase subunit SecA; preprotein translocase subunit SecA complement(1848101..1850719) Acidimicrobium ferrooxidans DSM 10331 8323856 YP_003110351.1 CDS Afer_1764 NC_013124.1 1850741 1851289 R TIGRFAM: ribosomal subunit interface protein; KEGG: rxy:Rxyl_1622 sigma 54 modulation protein / SSU ribosomal protein S30P; sigma 54 modulation protein/30S ribosomal protein S30EA complement(1850741..1851289) Acidimicrobium ferrooxidans DSM 10331 8323857 YP_003110352.1 CDS Afer_1765 NC_013124.1 1851300 1852577 R KEGG: gvi:glr3183 adenosylhomocysteinase; TIGRFAM: adenosylhomocysteinase; PFAM: S-adenosyl-L-homocysteine hydrolase, NAD binding; D-isomer specific 2-hydroxyacid dehydrogenase NAD- binding; S-adenosyl-L-homocysteine hydrolase; adenosylhomocysteinase complement(1851300..1852577) Acidimicrobium ferrooxidans DSM 10331 8323858 YP_003110353.1 CDS Afer_1766 NC_013124.1 1852618 1853643 R PFAM: sugar isomerase (SIS); KEGG: dau:Daud_0299 bifunctional phosphoglucose/phosphomannose isomerase; Mannose-6-phosphate isomerase complement(1852618..1853643) Acidimicrobium ferrooxidans DSM 10331 8323859 YP_003110354.1 CDS Afer_1767 NC_013124.1 1853631 1853900 R PFAM: protein of unknown function DUF343; KEGG: mva:Mvan_3299 hypothetical protein; hypothetical protein complement(1853631..1853900) Acidimicrobium ferrooxidans DSM 10331 8323860 YP_003110355.1 CDS Afer_1768 NC_013124.1 1853897 1855252 R PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase ; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; KEGG: fre:Franean1_5858 phosphomannomutase/phosphoglucomutase; phosphomannomutase complement(1853897..1855252) Acidimicrobium ferrooxidans DSM 10331 8323861 YP_003110356.1 CDS Afer_1769 NC_013124.1 1855360 1855569 R hypothetical protein complement(1855360..1855569) Acidimicrobium ferrooxidans DSM 10331 8323862 YP_003110357.1 CDS Afer_1770 NC_013124.1 1855712 1857250 D PFAM: acyl-CoA dehydrogenase domain protein; Acyl- CoA dehydrogenase type 2 domain; KEGG: lic:LIC13009 acyl-CoA dehydrogenase; acyl-CoA dehydrogenase domain-containing protein 1855712..1857250 Acidimicrobium ferrooxidans DSM 10331 8323863 YP_003110358.1 CDS Afer_1771 NC_013124.1 1857247 1858053 D hypothetical protein 1857247..1858053 Acidimicrobium ferrooxidans DSM 10331 8323864 YP_003110359.1 CDS Afer_1772 NC_013124.1 1858058 1858744 R PFAM: peptidase C60 sortase A and B; KEGG: kra:Krad_3106 peptidase C60 sortase A and B; peptidase C60 sortase A and B complement(1858058..1858744) Acidimicrobium ferrooxidans DSM 10331 8323865 YP_003110360.1 CDS Afer_1773 NC_013124.1 1858822 1859094 D hypothetical protein 1858822..1859094 Acidimicrobium ferrooxidans DSM 10331 8323866 YP_003110361.1 CDS Afer_1774 NC_013124.1 1859091 1859420 D PFAM: transposase IS3/IS911 family protein; KEGG: rxy:Rxyl_1861 transposase IS3/IS911; transposase IS3/IS911 family protein 1859091..1859420 Acidimicrobium ferrooxidans DSM 10331 8323867 YP_003110362.1 CDS Afer_1775 NC_013124.1 1859417 1860295 D PFAM: Integrase catalytic region; KEGG: amr:AM1_A0193 integrase, catalytic region; integrase catalytic subunit 1859417..1860295 Acidimicrobium ferrooxidans DSM 10331 8323868 YP_003110363.1 CDS Afer_1776 NC_013124.1 1860298 1861944 R KEGG: H02F09.3; hypothetical protein complement(1860298..1861944) Acidimicrobium ferrooxidans DSM 10331 8323869 YP_003110364.1 CDS Afer_1777 NC_013124.1 1862263 1863201 R PFAM: HpcH/HpaI aldolase; KEGG: sgr:SGR_1172 lyase; Citrate (pro-3S)-lyase complement(1862263..1863201) Acidimicrobium ferrooxidans DSM 10331 8323870 YP_003110365.1 CDS Afer_1778 NC_013124.1 1863240 1864916 R KEGG: fal:FRAAL5900 trehalose synthase (maltose alpha-D-glucosyltransferase); TIGRFAM: trehalose synthase; PFAM: alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain; trehalose synthase complement(1863240..1864916) Acidimicrobium ferrooxidans DSM 10331 8323871 YP_003110366.1 CDS Afer_1779 NC_013124.1 1864916 1865689 R PFAM: Enoyl-CoA hydratase/isomerase; KEGG: sen:SACE_6207 enoyl-CoA hydratase-isomerase; enoyl-CoA hydratase/isomerase complement(1864916..1865689) Acidimicrobium ferrooxidans DSM 10331 8323872 YP_003110367.1 CDS Afer_1780 NC_013124.1 1865682 1866647 R TIGRFAM: LAO/AO transport system ATPase; PFAM: ArgK protein; KEGG: saq:Sare_3990 LAO/AO transport system ATPase; LAO/AO transport system ATPase complement(1865682..1866647) Acidimicrobium ferrooxidans DSM 10331 8323873 YP_003110368.1 CDS Afer_1781 NC_013124.1 1866644 1867915 R TIGRFAM: UDP-N-acetylglucosamine 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: nfa:nfa10690 UDP-N-acetylglucosamine 1- carboxyvinyltransferase; UDP-N-acetylglucosamine1- carboxyvinyltransferase complement(1866644..1867915) Acidimicrobium ferrooxidans DSM 10331 8323874 YP_003110369.1 CDS Afer_1782 NC_013124.1 1867955 1869430 R PFAM: major facilitator superfamily MFS_1; KEGG: scl:sce1439 major facilitator superfamily permease; major facilitator superfamily protein complement(1867955..1869430) Acidimicrobium ferrooxidans DSM 10331 8323875 YP_003110370.1 CDS Afer_1783 NC_013124.1 1869447 1870130 R PFAM: dienelactone hydrolase; BAAT/Acyl-CoA thioester hydrolase; KEGG: scl:sce0062 carboxymethylenebutenolidase; carboxymethylenebutenolidase complement(1869447..1870130) Acidimicrobium ferrooxidans DSM 10331 8323876 YP_003110371.1 CDS Afer_1784 NC_013124.1 1870163 1870621 R PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: mab:MAB_3296 hypothetical protein; pyridoxamine 5'-phosphate oxidase-like FMN- binding protein complement(1870163..1870621) Acidimicrobium ferrooxidans DSM 10331 8323877 YP_003110372.1 CDS Afer_1785 NC_013124.1 1870605 1871138 R hypothetical protein complement(1870605..1871138) Acidimicrobium ferrooxidans DSM 10331 8323878 YP_003110373.1 CDS Afer_1786 NC_013124.1 1871138 1872529 R PFAM: fumarate lyase; KEGG: sgr:SGR_2491 fumarate hydratase C; fumarate lyase complement(1871138..1872529) Acidimicrobium ferrooxidans DSM 10331 8323879 YP_003110374.1 CDS Afer_1787 NC_013124.1 1872585 1873523 D PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: msm:MSMEG_3306 zinc-binding alcohol dehydrogenase; alcohol dehydrogenase GroES domain-containing protein 1872585..1873523 Acidimicrobium ferrooxidans DSM 10331 8323880 YP_003110375.1 CDS Afer_1788 NC_013124.1 1873460 1873795 R hypothetical protein complement(1873460..1873795) Acidimicrobium ferrooxidans DSM 10331 8323881 YP_003110376.1 CDS Afer_1789 NC_013124.1 1874059 1874643 D PFAM: regulatory protein TetR; KEGG: sgr:SGR_6910 TetR family transcriptional regulator; TetR family transcriptional regulator 1874059..1874643 Acidimicrobium ferrooxidans DSM 10331 8323882 YP_003110377.1 CDS Afer_1790 NC_013124.1 1874738 1876351 R KEGG: pmy:Pmen_1970 peptidase S9 prolyl oligopeptidase; dipeptidylaminopeptidase/acylaminoacyl- peptidase-like protein complement(1874738..1876351) Acidimicrobium ferrooxidans DSM 10331 8323883 YP_003110378.1 CDS Afer_1791 NC_013124.1 1876348 1878018 R KEGG: ace:Acel_0674 methylmalonyl-CoA mutase; TIGRFAM: methylmalonyl-CoA mutase, large subunit; PFAM: methylmalonyl-CoA mutase; methylmalonyl-CoA mutase, large subunit complement(1876348..1878018) Acidimicrobium ferrooxidans DSM 10331 8323884 YP_003110379.1 CDS glpX NC_013124.1 1878111 1879100 D type II fructose 1,6-bisphosphatae; in Escherichia coli this protein forms a dimer and binds manganese; fructose 1,6-bisphosphatase II 1878111..1879100 Acidimicrobium ferrooxidans DSM 10331 8323885 YP_003110380.1 CDS Afer_1793 NC_013124.1 1879061 1879963 R PFAM: Phosphoesterase HXTX; KEGG: sco:SCO4840 secreted protein; phosphoesterase HXTX complement(1879061..1879963) Acidimicrobium ferrooxidans DSM 10331 8323886 YP_003110381.1 CDS Afer_1794 NC_013124.1 1879960 1880352 R TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: H+transporting two-sector ATPase delta/epsilon subunit; KEGG: cbe:Cbei_0419 ATP synthase F1, epsilon subunit; ATP synthase F1 subunit epsilon complement(1879960..1880352) Acidimicrobium ferrooxidans DSM 10331 8323887 YP_003110382.1 CDS Afer_1795 NC_013124.1 1880355 1881770 R KEGG: fra:Francci3_3707 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase; ATP synthase F1 subunit beta complement(1880355..1881770) Acidimicrobium ferrooxidans DSM 10331 8323888 YP_003110383.1 CDS Afer_1796 NC_013124.1 1881767 1882657 R TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: fre:Franean1_1023 ATP synthase F1, gamma subunit; ATP synthase F1 subunit gamma complement(1881767..1882657) Acidimicrobium ferrooxidans DSM 10331 8323889 YP_003110384.1 CDS Afer_1797 NC_013124.1 1882661 1884175 R KEGG: ace:Acel_0651 F0F1 ATP synthase subunit alpha; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; ATP synthase F1 subunit alpha complement(1882661..1884175) Acidimicrobium ferrooxidans DSM 10331 8323890 YP_003110385.1 CDS Afer_1798 NC_013124.1 1884191 1885057 R TIGRFAM: ATP synthase F1, delta subunit; PFAM: H+transporting two-sector ATPase delta (OSCP) subunit; KEGG: pac:PPA1242 ATP synthase delta chain; ATP synthase F1 subunit delta complement(1884191..1885057) Acidimicrobium ferrooxidans DSM 10331 8323891 YP_003110386.1 CDS Afer_1799 NC_013124.1 1885057 1885578 R TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: cmi:CMM_1165 F0F1 ATP synthase subunit B; ATP synthase F0 subunit B complement(1885057..1885578) Acidimicrobium ferrooxidans DSM 10331 8323892 YP_003110387.1 CDS Afer_1800 NC_013124.1 1885583 1885858 R TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: sgr:SGR_2168 ATP synthase C chain; ATP synthase F0 subunit C complement(1885583..1885858) Acidimicrobium ferrooxidans DSM 10331 8323893 YP_003110388.1 CDS Afer_1801 NC_013124.1 1885963 1886736 R TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: fal:FRAAL5937 F0F1 ATP synthase subunit A; ATP synthase F0 subunit A complement(1885963..1886736) Acidimicrobium ferrooxidans DSM 10331 8323894 YP_003110389.1 CDS Afer_1802 NC_013124.1 1886733 1887149 R KEGG: pde:Pden_5097 inner-membrane translocator; inner-membrane translocator complement(1886733..1887149) Acidimicrobium ferrooxidans DSM 10331 8323895 YP_003110390.1 CDS Afer_1803 NC_013124.1 1887146 1887547 R hypothetical protein complement(1887146..1887547) Acidimicrobium ferrooxidans DSM 10331 8323896 YP_003110391.1 CDS Afer_1804 NC_013124.1 1887591 1888694 R PFAM: glycosyl transferase family 4; KEGG: kra:Krad_1261 glycosyl transferase family protein; glycosyl transferase family protein complement(1887591..1888694) Acidimicrobium ferrooxidans DSM 10331 8323897 YP_003110392.1 CDS Afer_1805 NC_013124.1 1888694 1889968 R PFAM: glycine hydroxymethyltransferase; Orn/Lys/Arg decarboxylase major region; aromatic amino acid beta- eliminating lyase/threonine aldolase; KEGG: afw:Anae109_2733 serine hydroxymethyltransferase; Glycine hydroxymethyltransferase complement(1888694..1889968) Acidimicrobium ferrooxidans DSM 10331 8323898 YP_003110393.1 CDS Afer_1806 NC_013124.1 1890015 1890692 R PFAM: SUA5/yciO/yrdC domain; KEGG: lpl:lp_2376 SUA5 family translation factor; SUA5/yciO/yrdC domain-containing protein complement(1890015..1890692) Acidimicrobium ferrooxidans DSM 10331 8323899 YP_003110394.1 CDS Afer_1807 NC_013124.1 1890679 1891446 R TIGRFAM: modification methylase, HemK family; PFAM: methyltransferase small; Methyltransferase type 12; RNA methylase; KEGG: gsu:GSU3103 HemK family modification methylase; modification methylase, HemK family complement(1890679..1891446) Acidimicrobium ferrooxidans DSM 10331 8323900 YP_003110395.1 CDS Afer_1808 NC_013124.1 1891455 1892528 R TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: ace:Acel_0641 peptide chain release factor 1; peptide chain release factor 1 complement(1891455..1892528) Acidimicrobium ferrooxidans DSM 10331 8323901 YP_003110396.1 CDS Afer_1809 NC_013124.1 1892525 1893454 R hypothetical protein complement(1892525..1893454) Acidimicrobium ferrooxidans DSM 10331 8323902 YP_003110397.1 CDS Afer_1810 NC_013124.1 1893420 1893644 R TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: ppd:Ppro_2650 50S ribosomal protein L31; 50S ribosomal protein L31 complement(1893420..1893644) Acidimicrobium ferrooxidans DSM 10331 8323903 YP_003110398.1 CDS Afer_1811 NC_013124.1 1893705 1895489 R KEGG: tfu:Tfu_2421 transcription termination factor Rho; TIGRFAM: transcription termination factor Rho; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; Rho termination factor RNA- binding; SMART: AAA ATPase; Cold shock protein; transcription termination factor Rho complement(1893705..1895489) Acidimicrobium ferrooxidans DSM 10331 8323904 YP_003110399.1 CDS Afer_1812 NC_013124.1 1895539 1896609 R TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: chy:CHY_1911 threonine synthase; threonine synthase complement(1895539..1896609) Acidimicrobium ferrooxidans DSM 10331 8323905 YP_003110400.1 CDS Afer_1813 NC_013124.1 1896621 1897898 R PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: fal:FRAAL5951 homoserine dehydrogenase; Homoserine dehydrogenase complement(1896621..1897898) Acidimicrobium ferrooxidans DSM 10331 8323906 YP_003110401.1 CDS Afer_1814 NC_013124.1 1897895 1899175 R TIGRFAM: diaminopimelate decarboxylase; PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: sco:SCO5353 diaminopimelate decarboxylase; diaminopimelate decarboxylase complement(1897895..1899175) Acidimicrobium ferrooxidans DSM 10331 8323907 YP_003110402.1 CDS Afer_1815 NC_013124.1 1899178 1900800 R KEGG: mva:Mvan_4350 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase; arginyl-tRNA synthetase complement(1899178..1900800) Acidimicrobium ferrooxidans DSM 10331 8323908 YP_003110403.1 CDS Afer_1816 NC_013124.1 1901140 1902603 R TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: hmo:HM1_2054 udp-N-acetylmuramoylalanyl-D- glutamate--2,6-diaminopimelate ligase; UDP-N-acetylmuramyl-tripeptide synthetase complement(1901140..1902603) Acidimicrobium ferrooxidans DSM 10331 8323910 YP_003110404.1 CDS Afer_1817 NC_013124.1 1902656 1903582 D PFAM: glycosyl transferase family 2; KEGG: rca:Rcas_3100 glycosyl transferase family protein; family 2 glycosyl transferase 1902656..1903582 Acidimicrobium ferrooxidans DSM 10331 8323911 YP_003110405.1 CDS Afer_1818 NC_013124.1 1903551 1904180 R PFAM: SNARE associated Golgi protein; KEGG: ace:Acel_0915 hypothetical protein; hypothetical protein complement(1903551..1904180) Acidimicrobium ferrooxidans DSM 10331 8323912 YP_003110406.1 CDS Afer_1819 NC_013124.1 1904227 1904439 D TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: ttj:TTHA0628 sec-independent protein translocase protein; twin-arginine translocation protein, TatA/E family subunit 1904227..1904439 Acidimicrobium ferrooxidans DSM 10331 8323913 YP_003110407.1 CDS Afer_1820 NC_013124.1 1904908 1905825 D PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: art:Arth_0066 alcohol dehydrogenase GroES domain protein; alcohol dehydrogenase GroES domain-containing protein 1904908..1905825 Acidimicrobium ferrooxidans DSM 10331 8323914 YP_003110408.1 CDS Afer_1821 NC_013124.1 1905822 1906700 D PFAM: ornithine cyclodeaminase/mu-crystallin; KEGG: saq:Sare_1353 ornithine cyclodeaminase/mu- crystallin; ornithine cyclodeaminase/mu-crystallin 1905822..1906700 Acidimicrobium ferrooxidans DSM 10331 8323915 YP_003110409.1 CDS Afer_1822 NC_013124.1 1906975 1907403 R KEGG: fal:FRAAL5121 integral membrane protein; hypothetical protein complement(1906975..1907403) Acidimicrobium ferrooxidans DSM 10331 8323916 YP_003110410.1 CDS Afer_1823 NC_013124.1 1907393 1909084 R KEGG: ace:Acel_0490 cytochrome-c oxidase; TIGRFAM: cytochrome c oxidase, subunit I; PFAM: cytochrome c oxidase subunit I; cytochrome c oxidase subunit I complement(1907393..1909084) Acidimicrobium ferrooxidans DSM 10331 8323917 YP_003110411.1 CDS Afer_1824 NC_013124.1 1909081 1909854 R PFAM: cytochrome c oxidase subunit II; cytochrome C oxidase subunit II transmembrane region; KEGG: fre:Franean1_1801 cytochrome c oxidase subunit II; cytochrome c oxidase subunit II complement(1909081..1909854) Acidimicrobium ferrooxidans DSM 10331 8323918 YP_003110412.1 CDS Afer_1825 NC_013124.1 1909847 1911415 R PFAM: Cytochrome b/b6 domain; KEGG: fre:Franean1_1812 cytochrome b/b6 domain- containing protein; cytochrome b/b6 domain-containing protein complement(1909847..1911415) Acidimicrobium ferrooxidans DSM 10331 8323919 YP_003110413.1 CDS Afer_1826 NC_013124.1 1911412 1912314 R PFAM: Rieske [2Fe-2S] domain protein; KEGG: fal:FRAAL5110 ubiquinol-cytochrome c reductase iron-sulfur subunit (Rieske iron-sulfur protein); Rieske (2Fe-2S) domain-containing protein complement(1911412..1912314) Acidimicrobium ferrooxidans DSM 10331 8323920 YP_003110414.1 CDS Afer_1827 NC_013124.1 1912311 1913153 R PFAM: cytochrome c class I; KEGG: fre:Franean1_1810 cytochrome c class I; cytochrome c class I complement(1912311..1913153) Acidimicrobium ferrooxidans DSM 10331 8323921 YP_003110415.1 CDS Afer_1828 NC_013124.1 1913172 1913768 R PFAM: cytochrome c oxidase subunit III; KEGG: mjl:Mjls_3302 cytochrome c oxidase, subunit III; cytochrome c oxidase subunit III complement(1913172..1913768) Acidimicrobium ferrooxidans DSM 10331 8323922 YP_003110416.1 CDS Afer_1829 NC_013124.1 1913796 1915916 R KEGG: sen:SACE_5730 ATP-dependent DNA helicase; ATP-dependent DNA helicase complement(1913796..1915916) Acidimicrobium ferrooxidans DSM 10331 8323923 YP_003110417.1 CDS Afer_1830 NC_013124.1 1915955 1917025 D KEGG: stp:Strop_1532 uroporphyrinogen decarboxylase; TIGRFAM: uroporphyrinogen decarboxylase; PFAM: Uroporphyrinogen decarboxylase (URO-D); uroporphyrinogen decarboxylase 1915955..1917025 Acidimicrobium ferrooxidans DSM 10331 8323924 YP_003110418.1 CDS Afer_1831 NC_013124.1 1917022 1918365 D KEGG: ace:Acel_1381 UDP-galactopyranose mutase; TIGRFAM: protoporphyrinogen oxidase; PFAM: amine oxidase; FAD dependent oxidoreductase; protoporphyrinogen oxidase 1917022..1918365 Acidimicrobium ferrooxidans DSM 10331 8323925 YP_003110419.1 CDS Afer_1832 NC_013124.1 1918374 1919450 R KEGG: rxy:Rxyl_0647 nicotinate-nucleotide- dimethylbenzimidazole phosphoribosyltransferase; TIGRFAM:nicotinate-nucleotide/dimethylbenzimidazolep hosphoribosyltransferase; PFAM: Nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase; nicotinate-nucleotide/dimethylbenzimidazole phosphoribosyltransferase complement(1918374..1919450) Acidimicrobium ferrooxidans DSM 10331 8323926 YP_003110420.1 CDS Afer_1833 NC_013124.1 1919450 1919929 R KEGG: ace:Acel_0440 hypothetical protein; hypothetical protein complement(1919450..1919929) Acidimicrobium ferrooxidans DSM 10331 8323927 YP_003110421.1 CDS Afer_1834 NC_013124.1 1920005 1920856 D KEGG: sen:SACE_5719 acyl-CoA thioesterase II; TIGRFAM: acyl-CoA thioesterase II; PFAM: acyl-CoA thioesterase; acyl-CoA thioesterase II 1920005..1920856 Acidimicrobium ferrooxidans DSM 10331 8323928 YP_003110422.1 CDS Afer_1835 NC_013124.1 1920888 1922156 R KEGG: fre:Franean1_7227 citrate synthase I; TIGRFAM: citrate synthase I; PFAM: Citrate synthase; citrate synthase I complement(1920888..1922156) Acidimicrobium ferrooxidans DSM 10331 8323929 YP_003110423.1 CDS Afer_1836 NC_013124.1 1922171 1922671 R PFAM: GCN5-related N-acetyltransferase; KEGG: bpt:Bpet3221 acetyltransferase; GCN5-like N-acetyltransferase complement(1922171..1922671) Acidimicrobium ferrooxidans DSM 10331 8323930 YP_003110424.1 CDS Afer_1837 NC_013124.1 1922745 1923599 D PFAM: protein of unknown function DUF75; KEGG: kra:Krad_1842 hypothetical protein; hypothetical protein 1922745..1923599 Acidimicrobium ferrooxidans DSM 10331 8323931 YP_003110425.1 CDS Afer_1838 NC_013124.1 1923586 1924278 R PFAM: NUDIX hydrolase; KEGG: mxa:MXAN_5418 hydrolase, NUDIX family; NUDIX hydrolase complement(1923586..1924278) Acidimicrobium ferrooxidans DSM 10331 8323932 YP_003110426.1 CDS Afer_1839 NC_013124.1 1924651 1925070 R hypothetical protein complement(1924651..1925070) Acidimicrobium ferrooxidans DSM 10331 8323933 YP_003110427.1 CDS Afer_1840 NC_013124.1 1925076 1925315 R KEGG: tye:THEYE_A1680 ferredoxin; ferredoxin complement(1925076..1925315) Acidimicrobium ferrooxidans DSM 10331 8323934 YP_003110428.1 CDS Afer_1841 NC_013124.1 1925273 1926070 R KEGG: scl:sce5850 hypothetical protein; hypothetical protein complement(1925273..1926070) Acidimicrobium ferrooxidans DSM 10331 8323935 YP_003110429.1 CDS Afer_1842 NC_013124.1 1926308 1927834 R PFAM: transposase IS4 family protein; KEGG: mva:Mvan_4071 transposase, IS4 family protein; transposase IS4 family protein complement(1926308..1927834) Acidimicrobium ferrooxidans DSM 10331 8323936 YP_003110430.1 CDS Afer_1843 NC_013124.1 1927931 1928638 R PFAM: Chlorite dismutase; KEGG: ttj:TTHA1714 heme peroxidase; Chlorite dismutase complement(1927931..1928638) Acidimicrobium ferrooxidans DSM 10331 8323937 YP_003110431.1 CDS Afer_1844 NC_013124.1 1928635 1931037 R PFAM: AAA ATPase central domain protein; peptidase M41; SMART: AAA ATPase; KEGG: fre:Franean1_1258 ATPase central domain- containing protein; AAA ATPase central domain-containing protein complement(1928635..1931037) Acidimicrobium ferrooxidans DSM 10331 8323938 YP_003110432.1 CDS Afer_1845 NC_013124.1 1931034 1931711 R hypothetical protein complement(1931034..1931711) Acidimicrobium ferrooxidans DSM 10331 8323939 YP_003110433.1 CDS Afer_1846 NC_013124.1 1931994 1933616 R TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: ace:Acel_0101 chaperonin GroEL; chaperonin GroEL complement(1931994..1933616) Acidimicrobium ferrooxidans DSM 10331 8323940 YP_003110434.1 CDS Afer_1847 NC_013124.1 1933741 1934031 R PFAM: thiamineS protein; KEGG: hya:HY04AAS1_0115 MoaD family protein; sulfur transfer protein ThiS complement(1933741..1934031) Acidimicrobium ferrooxidans DSM 10331 8323941 YP_003110435.1 CDS Afer_1848 NC_013124.1 1934052 1935296 R TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: gvi:gll2062 threonine synthase; threonine synthase complement(1934052..1935296) Acidimicrobium ferrooxidans DSM 10331 8323942 YP_003110436.1 CDS Afer_1849 NC_013124.1 1935485 1936831 D PFAM: glycosyl transferase family 20; KEGG: sco:SCO4290 trehalose-phosphate synthase; glycosyl transferase family protein 1935485..1936831 Acidimicrobium ferrooxidans DSM 10331 8323943 YP_003110437.1 CDS Afer_1850 NC_013124.1 1936828 1937631 D TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; trehalose-phosphatase; PFAM: trehalose-phosphatase; KEGG: saq:Sare_0810 HAD family hydrolase; HAD-superfamily hydrolase 1936828..1937631 Acidimicrobium ferrooxidans DSM 10331 8323944 YP_003110438.1 CDS Afer_1851 NC_013124.1 1937663 1938151 D PFAM: regulatory protein TetR; KEGG: msm:MSMEG_5282 transcriptional regulator; TetR family transcriptional regulator 1937663..1938151 Acidimicrobium ferrooxidans DSM 10331 8323945 YP_003110439.1 CDS Afer_1852 NC_013124.1 1938101 1938688 R KEGG: mmr:Mmar10_2710 molybdenum cofactor guanylyltransferase; hypothetical protein complement(1938101..1938688) Acidimicrobium ferrooxidans DSM 10331 8323946 YP_003110440.1 CDS Afer_1853 NC_013124.1 1938706 1939713 D KEGG: fre:Franean1_3201 molybdenum cofactor biosynthesis protein A; TIGRFAM: molybdenum cofactor biosynthesis protein A; PFAM: molybdenum cofactor synthesis domain protein; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; molybdenum cofactor biosynthesis protein A 1938706..1939713 Acidimicrobium ferrooxidans DSM 10331 8323947 YP_003110441.1 CDS Afer_1854 NC_013124.1 1939775 1940266 D TIGRFAM: molybdenum cofactor biosynthesis protein C; PFAM: molybdopterin cofactor biosynthesis MoaC region; KEGG: hmo:HM1_0063 molybdenum cofactor biosynthesis protein C; molybdenum cofactor biosynthesis protein C 1939775..1940266 Acidimicrobium ferrooxidans DSM 10331 8323948 YP_003110442.1 CDS Afer_1855 NC_013124.1 1940263 1940676 D KEGG: lfe:LAF_1457 hypothetical protein; hypothetical protein 1940263..1940676 Acidimicrobium ferrooxidans DSM 10331 8323949 YP_003110443.1 CDS Afer_1856 NC_013124.1 1941560 1941973 R PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: stp:Strop_0126 regulatory protein, ArsR; ArsR family transcriptional regulator complement(1941560..1941973) Acidimicrobium ferrooxidans DSM 10331 8323951 YP_003110444.1 CDS Afer_1857 NC_013124.1 1942381 1943697 D PFAM: Arsenical pump membrane protein; Citrate transporter; KEGG: rpa:RPA2258 arsenical pump membrane protein; Arsenical pump membrane protein 1942381..1943697 Acidimicrobium ferrooxidans DSM 10331 8323952 YP_003110445.1 CDS Afer_1858 NC_013124.1 1943911 1945311 D PFAM: pyridine nucleotide-disulphide oxidoreductase dimerization region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: mab:MAB_4865 pyridine nucleotide- disulphide oxidoreductase; pyridine nucleotide-disulfide oxidoreductase dimerization subunit 1943911..1945311 Acidimicrobium ferrooxidans DSM 10331 8323953 YP_003110446.1 CDS Afer_1859 NC_013124.1 1945777 1947426 D TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; KEGG: fal:FRAAL0800 thiamine biosynthesis protein ThiC; thiamine biosynthesis protein ThiC 1945777..1947426 Acidimicrobium ferrooxidans DSM 10331 8323954 YP_003110447.1 CDS Afer_1860 NC_013124.1 1947801 1948745 D KEGG: dau:Daud_1971 hypothetical protein; hypothetical protein 1947801..1948745 Acidimicrobium ferrooxidans DSM 10331 8323955 YP_003110448.1 CDS Afer_1861 NC_013124.1 1949088 1949360 D KEGG: saq:Sare_2580 integrase catalytic region; hypothetical protein 1949088..1949360 Acidimicrobium ferrooxidans DSM 10331 8323956 YP_003110449.1 CDS Afer_1863 NC_013124.1 1950258 1950578 R PFAM: transposase IS3/IS911 family protein; KEGG: mva:Mvan_5059 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(1950258..1950578) Acidimicrobium ferrooxidans DSM 10331 8323958 YP_003110450.1 CDS Afer_1864 NC_013124.1 1950701 1951513 R PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: chy:CHY_1116 ISChy4, transposition helper protein; IstB domain-containing protein ATP-binding protein complement(1950701..1951513) Acidimicrobium ferrooxidans DSM 10331 8323959 YP_003110451.1 CDS Afer_1865 NC_013124.1 1951506 1952747 R PFAM: Integrase catalytic region; KEGG: chy:CHY_1117 ISChy4, transposase; integrase catalytic subunit complement(1951506..1952747) Acidimicrobium ferrooxidans DSM 10331 8323960 YP_003110452.1 CDS Afer_1866 NC_013124.1 1952844 1953452 R PFAM: restriction endonuclease XhoI; KEGG: mbn:Mboo_2338 type II site-specific deoxyribonuclease; Type II site-specific deoxyribonuclease complement(1952844..1953452) Acidimicrobium ferrooxidans DSM 10331 8323961 YP_003110453.1 CDS Afer_1868 NC_013124.1 1954517 1954951 D PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc; KEGG: mta:Moth_2333 hypothetical protein; PilT protein domain-containing protein 1954517..1954951 Acidimicrobium ferrooxidans DSM 10331 8323963 YP_003110454.1 CDS Afer_1869 NC_013124.1 1955006 1955395 R TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; nucleic acid binding OB-fold tRNA/helicase-type; KEGG: dth:DICTH_1248 single-strand DNA-binding protein; single-strand binding protein complement(1955006..1955395) Acidimicrobium ferrooxidans DSM 10331 8323964 YP_003110455.1 CDS Afer_1871 NC_013124.1 1956309 1959158 R PFAM: protein of unknown function UPF0182; KEGG: pth:PTH_1387 hypothetical protein; hypothetical protein complement(1956309..1959158) Acidimicrobium ferrooxidans DSM 10331 8323967 YP_003110456.1 CDS Afer_1872 NC_013124.1 1959171 1961621 R KEGG: sco:SCO5397 large Ala/Glu-rich protein; hypothetical protein complement(1959171..1961621) Acidimicrobium ferrooxidans DSM 10331 8323968 YP_003110457.1 CDS Afer_1873 NC_013124.1 1961630 1962652 R KEGG: sen:SACE_1100 PDZ/DHR/GLGF; hypothetical protein complement(1961630..1962652) Acidimicrobium ferrooxidans DSM 10331 8323969 YP_003110458.1 CDS Afer_1874 NC_013124.1 1962731 1963396 D PFAM: class II aldolase/adducin family protein; KEGG: sth:STH188 sugar isomerase; class II aldolase/adducin family protein 1962731..1963396 Acidimicrobium ferrooxidans DSM 10331 8323970 YP_003110459.1 CDS Afer_1875 NC_013124.1 1963393 1963788 D PFAM: Carboxymuconolactone decarboxylase; KEGG: mmw:Mmwyl1_1812 alkylhydroperoxidase; carboxymuconolactone decarboxylase 1963393..1963788 Acidimicrobium ferrooxidans DSM 10331 8323971 YP_003110460.1 CDS Afer_1876 NC_013124.1 1963763 1964218 D PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: sen:SACE_7045 MarR family transcriptional regulator; MarR family transcriptional regulator 1963763..1964218 Acidimicrobium ferrooxidans DSM 10331 8323972 YP_003110461.1 CDS Afer_1877 NC_013124.1 1964295 1964624 D hypothetical protein 1964295..1964624 Acidimicrobium ferrooxidans DSM 10331 8323973 YP_003110462.1 CDS Afer_1878 NC_013124.1 1964621 1965442 R PFAM: ABC-2 type transporter; KEGG: fra:Francci3_1473 hypothetical protein; ABC-2 type transporter complement(1964621..1965442) Acidimicrobium ferrooxidans DSM 10331 8323974 YP_003110463.1 CDS Afer_1879 NC_013124.1 1965439 1966389 R KEGG: ace:Acel_0339 daunorubicin resistance ABC transporter ATPase subunit; TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; daunorubicin resistance ABC transporter ATPase subunit complement(1965439..1966389) Acidimicrobium ferrooxidans DSM 10331 8323975 YP_003110464.1 CDS Afer_1880 NC_013124.1 1966429 1967418 R catalyzes the oxidation of malate to oxaloacetate; malate dehydrogenase complement(1966429..1967418) Acidimicrobium ferrooxidans DSM 10331 8323976 YP_003110465.1 CDS Afer_1881 NC_013124.1 1967432 1968655 R TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: afl:Aflv_0505 isocitrate dehydrogenase; isocitrate dehydrogenase, NADP-dependent complement(1967432..1968655) Acidimicrobium ferrooxidans DSM 10331 8323977 YP_003110466.1 CDS Afer_1882 NC_013124.1 1968692 1969870 R KEGG: ace:Acel_0470 hypothetical protein; hypothetical protein complement(1968692..1969870) Acidimicrobium ferrooxidans DSM 10331 8323978 YP_003110467.1 CDS Afer_1883 NC_013124.1 1969965 1970663 D KEGG: mul:MUL_2524 lipase LipV; hypothetical protein 1969965..1970663 Acidimicrobium ferrooxidans DSM 10331 8323979 YP_003110468.1 CDS Afer_1884 NC_013124.1 1970820 1971314 D PFAM: molybdopterin biosynthesis MoaE protein; KEGG: mem:Memar_1334 molybdopterin biosynthesis MoaE; molybdopterin biosynthesis MoaE protein 1970820..1971314 Acidimicrobium ferrooxidans DSM 10331 8323980 YP_003110469.1 CDS Afer_1885 NC_013124.1 1971311 1971517 D hypothetical protein 1971311..1971517 Acidimicrobium ferrooxidans DSM 10331 8323981 YP_003110470.1 CDS Afer_1886 NC_013124.1 1971514 1972494 D KEGG: cbf:CLI_0218 mbl protein; actin-like ATPase 1971514..1972494 Acidimicrobium ferrooxidans DSM 10331 8323982 YP_003110471.1 CDS Afer_1887 NC_013124.1 1972948 1974684 D KEGG: cbe:Cbei_2588 collagen triple helix repeat; hypothetical protein 1972948..1974684 Acidimicrobium ferrooxidans DSM 10331 8323983 YP_003110472.1 CDS Afer_1888 NC_013124.1 1974821 1976602 D KEGG: art:Arth_4271 hypothetical protein; hypothetical protein 1974821..1976602 Acidimicrobium ferrooxidans DSM 10331 8323984 YP_003110473.1 CDS Afer_1894 NC_013124.1 1979904 1980224 R PFAM: transposase IS3/IS911 family protein; KEGG: mva:Mvan_5059 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(1979904..1980224) Acidimicrobium ferrooxidans DSM 10331 8323990 YP_003110474.1 CDS Afer_1896 NC_013124.1 1982271 1982924 R PFAM: PBS lyase HEAT domain protein repeat- containing protein; KEGG: rrs:RoseRS_1736 heat repeat-containing PBS lyase; PBS lyase HEAT domain-containing protein repeat-containing protein complement(1982271..1982924) Acidimicrobium ferrooxidans DSM 10331 8323992 YP_003110475.1 CDS Afer_1897 NC_013124.1 1982969 1984483 R PFAM: permease for cytosine/purines uracil thiamine allantoin; KEGG: rha:RHA1_ro01635 permease for cytosine/purines, uracil, thiamine, allantoin; cytosine/purines uracil thiamine allantoin permease complement(1982969..1984483) Acidimicrobium ferrooxidans DSM 10331 8323993 YP_003110476.1 CDS Afer_1898 NC_013124.1 1984538 1986109 R PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pmy:Pmen_4599 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase complement(1984538..1986109) Acidimicrobium ferrooxidans DSM 10331 8323994 YP_003110477.1 CDS Afer_1899 NC_013124.1 1986121 1986876 R TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: gur:Gura_2796 RNA methyltransferase; TrmH family RNA methyltransferase complement(1986121..1986876) Acidimicrobium ferrooxidans DSM 10331 8323995 YP_003110478.1 CDS Afer_1900 NC_013124.1 1986863 1987957 R KEGG: lxx:Lxx18250 2-C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; TIGRFAM: 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase; 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; PFAM: MECDP-synthase; 4-diphosphocytidyl-2C-methyl- D-erythritol synthase; 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase complement(1986863..1987957) Acidimicrobium ferrooxidans DSM 10331 8323996 YP_003110479.1 CDS Afer_1901 NC_013124.1 1987964 1988443 R PFAM: transcription factor CarD; KEGG: mjl:Mjls_5126 CarD family transcriptional regulator; CarD family transcriptional regulator complement(1987964..1988443) Acidimicrobium ferrooxidans DSM 10331 8323997 YP_003110480.1 CDS Afer_1902 NC_013124.1 1988541 1989611 R non-specific DNA-binding; scans chromosomes during sporulation for DNA-damage; delays initiation of sporulation; participates in a checkpoint signaling cascade for cell-cycle progression and DNA repair; DNA integrity scanning protein DisA complement(1988541..1989611) Acidimicrobium ferrooxidans DSM 10331 8323998 YP_003110481.1 CDS Afer_1903 NC_013124.1 1989702 1992191 R PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; KEGG: fal:FRAAL6680 ATP-dependent protease, HSP 100, part of multi-chaperone system with DnaK, DnaJ, and GrpE; ATPase AAA-2 domain-containing protein complement(1989702..1992191) Acidimicrobium ferrooxidans DSM 10331 8323999 YP_003110482.1 CDS Afer_1904 NC_013124.1 1992408 1994294 R KEGG: fre:Franean1_6445 hypothetical protein; hypothetical protein complement(1992408..1994294) Acidimicrobium ferrooxidans DSM 10331 8324000 YP_003110483.1 CDS Afer_1905 NC_013124.1 1994391 1995407 D PFAM: Polyprenyl synthetase; KEGG: sma:SAV_4864 polyprenyl diphosphate synthase; polyprenyl synthetase 1994391..1995407 Acidimicrobium ferrooxidans DSM 10331 8324001 YP_003110484.1 CDS Afer_1906 NC_013124.1 1995658 1997154 R TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); tRNA synthetase class II (G H P and S); nucleic acid binding OB- fold tRNA/helicase-type; KEGG: cya:CYA_0333 lysyl-tRNA synthetase; lysyl-tRNA synthetase complement(1995658..1997154) Acidimicrobium ferrooxidans DSM 10331 8324002 YP_003110485.1 CDS Afer_1907 NC_013124.1 1997194 1998006 R TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: mta:Moth_0146 pantothenate kinase; transcriptional acitvator, Baf family complement(1997194..1998006) Acidimicrobium ferrooxidans DSM 10331 8324003 YP_003110486.1 CDS Afer_1908 NC_013124.1 1997999 1998844 R KEGG: rsh:Rsph17029_0403 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase; pantoate/beta-alanine ligase complement(1997999..1998844) Acidimicrobium ferrooxidans DSM 10331 8324004 YP_003110487.1 CDS Afer_1909 NC_013124.1 1998832 1999317 R TIGRFAM:2-amino-4-hydroxy-6- hydroxymethyldihydropter idinepyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK; KEGG: dra:DR_0170 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase complement(1998832..1999317) Acidimicrobium ferrooxidans DSM 10331 8324005 YP_003110488.1 CDS Afer_1910 NC_013124.1 1999314 1999691 R PFAM: dihydroneopterin aldolase; KEGG: rxy:Rxyl_2579 dihydroneopterin aldolase; dihydroneopterin aldolase complement(1999314..1999691) Acidimicrobium ferrooxidans DSM 10331 8324006 YP_003110489.1 CDS Afer_1911 NC_013124.1 1999682 2000488 R KEGG: mmr:Mmar10_2410 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS; dihydropteroate synthase complement(1999682..2000488) Acidimicrobium ferrooxidans DSM 10331 8324007 YP_003110490.1 CDS Afer_1912 NC_013124.1 2000485 2001057 R PFAM: GTP cyclohydrolase I; KEGG: paa:Paes_0859 GTP cyclohydrolase I; GTP cyclohydrolase I complement(2000485..2001057) Acidimicrobium ferrooxidans DSM 10331 8324008 YP_003110491.1 CDS Afer_1913 NC_013124.1 2001054 2001599 R KEGG: fre:Franean1_0299 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase complement(2001054..2001599) Acidimicrobium ferrooxidans DSM 10331 8324009 YP_003110492.1 CDS Afer_1914 NC_013124.1 2001596 2002516 R TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: nfa:nfa3880 hypothetical protein; tRNA(Ile)-lysidine synthetase complement(2001596..2002516) Acidimicrobium ferrooxidans DSM 10331 8324010 YP_003110493.1 CDS Afer_1915 NC_013124.1 2002506 2003483 R KEGG: kra:Krad_0528 hypothetical protein; hypothetical protein complement(2002506..2003483) Acidimicrobium ferrooxidans DSM 10331 8324011 YP_003110494.1 CDS Afer_1916 NC_013124.1 2003503 2003700 R hypothetical protein complement(2003503..2003700) Acidimicrobium ferrooxidans DSM 10331 8324012 YP_003110495.1 CDS Afer_1917 NC_013124.1 2003730 2004062 R TIGRFAM: anti-sigma factor; KEGG: saq:Sare_4094 anti-sigma factor RshA; anti-sigma factor complement(2003730..2004062) Acidimicrobium ferrooxidans DSM 10331 8324013 YP_003110496.1 CDS Afer_1918 NC_013124.1 2004063 2004638 R TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: ace:Acel_0538 ECF subfamily RNA polymerase sigma-24 factor; ECF subfamily RNA polymerase sigma-24 subunit complement(2004063..2004638) Acidimicrobium ferrooxidans DSM 10331 8324014 YP_003110497.1 CDS Afer_1920 NC_013124.1 2005603 2006187 R KEGG: xau:Xaut_4325 dTMP kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase; thymidylate kinase complement(2005603..2006187) Acidimicrobium ferrooxidans DSM 10331 8324017 YP_003110498.1 CDS Afer_1921 NC_013124.1 2006202 2008754 R KEGG: fra:Francci3_4305 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein; DNA topoisomerase I complement(2006202..2008754) Acidimicrobium ferrooxidans DSM 10331 8324018 YP_003110499.1 CDS Afer_1922 NC_013124.1 2008773 2011106 R PFAM: nucleic acid binding OB-fold tRNA/helicase- type; amino acid permease-associated region; KEGG: ace:Acel_1194 nucleic acid binding, OB-fold, tRNA/helicase-type; OB-fold tRNA/helicase-type nucleic acid binding protein complement(2008773..2011106) Acidimicrobium ferrooxidans DSM 10331 8324019 YP_003110500.1 CDS Afer_1923 NC_013124.1 2011277 2011939 D PFAM: TrkA-N domain protein; KEGG: sgr:SGR_1656 potassium transporter; TrkA-N domain-containing protein 2011277..2011939 Acidimicrobium ferrooxidans DSM 10331 8324020 YP_003110501.1 CDS Afer_1924 NC_013124.1 2011944 2012639 D PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: fre:Franean1_5192 TrkA domain-containing protein; TrkA-N domain-containing protein 2011944..2012639 Acidimicrobium ferrooxidans DSM 10331 8324021 YP_003110502.1 CDS Afer_1925 NC_013124.1 2012691 2013512 D TIGRFAM: HAD-superfamily subfamily IB hydrolase, TIGR01490; HAD-superfamily hydrolase, subfamily IB (PSPase-like); PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: stp:Strop_4041 HAD family hydrolase; HAD-superfamily hydrolase 2012691..2013512 Acidimicrobium ferrooxidans DSM 10331 8324022 YP_003110503.1 CDS Afer_1926 NC_013124.1 2013946 2015577 D KEGG: sma:SAV_74 hypothetical protein; hypothetical protein 2013946..2015577 Acidimicrobium ferrooxidans DSM 10331 8324023 YP_003110504.1 CDS Afer_1927 NC_013124.1 2016887 2017720 R PFAM: protein of unknown function DUF6 transmembrane; KEGG: msm:MSMEG_2639 integral membrane protein; hypothetical protein complement(2016887..2017720) Acidimicrobium ferrooxidans DSM 10331 8324024 YP_003110505.1 CDS Afer_1928 NC_013124.1 2017783 2018580 D PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: nfa:nfa43360 hypothetical protein; Extradiol ring-cleavage dioxygenase class III protein subunit B 2017783..2018580 Acidimicrobium ferrooxidans DSM 10331 8324025 YP_003110506.1 CDS Afer_1929 NC_013124.1 2018698 2020341 D KEGG: aba:Acid345_0662 parallel beta-helix repeat protein; hypothetical protein 2018698..2020341 Acidimicrobium ferrooxidans DSM 10331 8324026 YP_003110507.1 CDS Afer_1930 NC_013124.1 2020457 2020957 R KEGG: rrs:RoseRS_3572 hypothetical protein; hypothetical protein complement(2020457..2020957) Acidimicrobium ferrooxidans DSM 10331 8324027 YP_003110508.1 CDS Afer_1931 NC_013124.1 2021012 2022070 R PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: scl:sce1136 regulator of molybdate uptake; transcriptional regulator of molybdate metabolism, XRE family complement(2021012..2022070) Acidimicrobium ferrooxidans DSM 10331 8324028 YP_003110509.1 CDS Afer_1932 NC_013124.1 2022067 2023005 R PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cms:CMS_2522 ABC transporter ATP- binding subunit; ABC transporter-like protein complement(2022067..2023005) Acidimicrobium ferrooxidans DSM 10331 8324029 YP_003110510.1 CDS Afer_1933 NC_013124.1 2022992 2023810 R PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bvi:Bcep1808_7295 tungstate/molybdate transport system permease protein; binding-protein-dependent transport systems inner membrane component complement(2022992..2023810) Acidimicrobium ferrooxidans DSM 10331 8324030 YP_003110511.1 CDS Afer_1934 NC_013124.1 2023773 2024726 R KEGG: bvi:Bcep1808_7294 tungstate/molybdate binding protein; tungstate/molybdate binding protein complement(2023773..2024726) Acidimicrobium ferrooxidans DSM 10331 8324031 YP_003110512.1 CDS Afer_1935 NC_013124.1 2024874 2026025 D PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: sgr:SGR_3424 aminotransferase; class I and II aminotransferase 2024874..2026025 Acidimicrobium ferrooxidans DSM 10331 8324032 YP_003110513.1 CDS Afer_1936 NC_013124.1 2026080 2026679 R PFAM: Methyltransferase type 11; Tellurite resistance methyltransferase, TehB, core; Methyltransferase type 12; KEGG: ace:Acel_0489 methyltransferase type 12; type 11 methyltransferase complement(2026080..2026679) Acidimicrobium ferrooxidans DSM 10331 8324033 YP_003110514.1 CDS Afer_1937 NC_013124.1 2026747 2027874 D PFAM: metallophosphoesterase; KEGG: mbo:Mb1308 hypothetical protein; metallophosphoesterase 2026747..2027874 Acidimicrobium ferrooxidans DSM 10331 8324034 YP_003110515.1 CDS Afer_1938 NC_013124.1 2027871 2030711 D PFAM: SMC domain protein; KEGG: mab:MAB_1421 hypothetical protein; SMC domain-containing protein 2027871..2030711 Acidimicrobium ferrooxidans DSM 10331 8324035 YP_003110516.1 CDS Afer_1939 NC_013124.1 2031298 2032554 R PFAM: NAD-dependent epimerase/dehydratase; KEGG: rrs:RoseRS_0861 NAD-dependent epimerase/dehydratase; UDP-sulfoquinovose synthase complement(2031298..2032554) Acidimicrobium ferrooxidans DSM 10331 8324036 YP_003110517.1 CDS Afer_1940 NC_013124.1 2032804 2033913 D KEGG: ace:Acel_2052 cysteinyl-tRNA synthetase-like; cysteinyl-tRNA synthetase-like protein 2032804..2033913 Acidimicrobium ferrooxidans DSM 10331 8324037 YP_003110518.1 CDS Afer_1941 NC_013124.1 2034719 2035588 D PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: chy:CHY_2227 phosphotransferase domain- containing protein; PHP domain-containing protein 2034719..2035588 Acidimicrobium ferrooxidans DSM 10331 8324039 YP_003110519.1 CDS Afer_1942 NC_013124.1 2036028 2037464 D TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: fal:FRAAL0128 amidophosphoribosyltransferase; amidophosphoribosyltransferase 2036028..2037464 Acidimicrobium ferrooxidans DSM 10331 8324042 YP_003110520.1 CDS Afer_1943 NC_013124.1 2037552 2038580 D KEGG: aeh:Mlg_0516 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase; PFAM: AIR synthase related protein; AIR synthase related protein domain protein; phosphoribosylformylglycinamidine cyclo-ligase 2037552..2038580 Acidimicrobium ferrooxidans DSM 10331 8324043 YP_003110521.1 CDS Afer_1944 NC_013124.1 2038556 2039116 D TIGRFAM: orotate phosphoribosyltransferase; KEGG: cms:CMS_0233 orotate phosphoribosyltransferase; orotate phosphoribosyltransferase 2038556..2039116 Acidimicrobium ferrooxidans DSM 10331 8324044 YP_003110522.1 CDS Afer_1945 NC_013124.1 2039162 2040082 D KEGG: spw:SPCG_1750 cell wall surface anchor family protein; hypothetical protein 2039162..2040082 Acidimicrobium ferrooxidans DSM 10331 8324045 YP_003110523.1 CDS Afer_1946 NC_013124.1 2040357 2041364 R PFAM: type IV pilus assembly PilZ; type IV pilus assembly PilZ complement(2040357..2041364) Acidimicrobium ferrooxidans DSM 10331 8324046 YP_003110524.1 CDS Afer_1947 NC_013124.1 2041370 2042782 R PFAM: malic protein NAD-binding; amino acid-binding ACT domain protein; malic protein domain protein; UBA/THIF- type NAD/FAD binding protein; KEGG: rxy:Rxyl_1110 malate dehydrogenase (oxaloacetate decarboxylating); Malate dehydrogenase complement(2041370..2042782) Acidimicrobium ferrooxidans DSM 10331 8324047 YP_003110525.1 CDS Afer_1948 NC_013124.1 2042827 2044137 D KEGG: fal:FRAAL1199 phosphomannomutase; hypothetical protein 2042827..2044137 Acidimicrobium ferrooxidans DSM 10331 8324048 YP_003110526.1 CDS Afer_1949 NC_013124.1 2044208 2046046 D PFAM: General secretory system II protein E domain protein; glycosyl transferase family 2; KEGG: ttj:TTHA0743 glycosyltransferase related protein; General secretory system II protein E domain-containing protein 2044208..2046046 Acidimicrobium ferrooxidans DSM 10331 8324049 YP_003110527.1 CDS Afer_1950 NC_013124.1 2046043 2046963 D KEGG: ret:RHE_CH02708 hypothetical protein; hypothetical protein 2046043..2046963 Acidimicrobium ferrooxidans DSM 10331 8324050 YP_003110528.1 CDS Afer_1951 NC_013124.1 2046960 2047391 R hypothetical protein complement(2046960..2047391) Acidimicrobium ferrooxidans DSM 10331 8324051 YP_003110529.1 CDS Afer_1952 NC_013124.1 2047971 2050175 D KEGG: mta:Moth_2048 phosphoribosylformylglycinamidine synthase II; TIGRFAM: phosphoribosylformylglycinamidine synthase II; PFAM: AIR synthase related protein domain protein; AIR synthase related protein; phosphoribosylformylglycinamidine synthase II 2047971..2050175 Acidimicrobium ferrooxidans DSM 10331 8324052 YP_003110530.1 CDS Afer_1953 NC_013124.1 2050172 2050825 R KEGG: rxy:Rxyl_0995 phosphoribosylformylglycinamidine synthase subunit I; TIGRFAM: phosphoribosylformylglycinamidine synthase I; PFAM: CobB/CobQ domain protein glutamine amidotransferase; phosphoribosylformylglycinamidine synthase I complement(2050172..2050825) Acidimicrobium ferrooxidans DSM 10331 8324053 YP_003110531.1 CDS Afer_1954 NC_013124.1 2050822 2051091 R TIGRFAM: phosphoribosylformylglycinamidine synthase, purS; KEGG: syg:sync_1700 phosphoribosylformylglycinamidine synthase, PurS protein; phosphoribosylformylglycinamidine synthase PurS complement(2050822..2051091) Acidimicrobium ferrooxidans DSM 10331 8324054 YP_003110532.1 CDS Afer_1955 NC_013124.1 2051088 2051966 R PFAM: SAICAR synthetase; KEGG: mva:Mvan_5138 phosphoribosylaminoimidazole- succinocarboxamide synthase; phosphoribosylaminoimidazolesuccinocarboxamide synthase complement(2051088..2051966) Acidimicrobium ferrooxidans DSM 10331 8324055 YP_003110533.1 CDS Afer_1956 NC_013124.1 2051963 2053267 R TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; KEGG: tth:TTC1149 adenylosuccinate lyase protein; adenylosuccinate lyase complement(2051963..2053267) Acidimicrobium ferrooxidans DSM 10331 8324056 YP_003110534.1 CDS Afer_1957 NC_013124.1 2053365 2054591 R KEGG: fra:Francci3_4370 phosphoribosylamine-- glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: phosphoribosylglycinamide synthetase; ATP- dependent carboxylate-amine ligase domain protein ATP- grasp; phosphoribosylamine/glycine ligase complement(2053365..2054591) Acidimicrobium ferrooxidans DSM 10331 8324057 YP_003110535.1 CDS Afer_1958 NC_013124.1 2054597 2055874 R KEGG: fal:FRAAL6660 adenylosuccinate synthetase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase; adenylosuccinate synthetase complement(2054597..2055874) Acidimicrobium ferrooxidans DSM 10331 8324058 YP_003110536.1 CDS Afer_1959 NC_013124.1 2055907 2056560 R KEGG: cur:cur_0215 phosphoglycerate mutase; TIGRFAM: phosphoglycerate mutase 1 family; PFAM: Phosphoglycerate mutase; phosphoglycerate mutase 1 family complement(2055907..2056560) Acidimicrobium ferrooxidans DSM 10331 8324059 YP_003110537.1 CDS Afer_1960 NC_013124.1 2056798 2058639 D KEGG: ace:Acel_2115 molecular chaperone DnaK; TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; chaperone protein DnaK 2056798..2058639 Acidimicrobium ferrooxidans DSM 10331 8324060 YP_003110538.1 CDS Afer_1961 NC_013124.1 2058643 2059260 D PFAM: GrpE protein; KEGG: ace:Acel_2116 GrpE protein; GrpE protein 2058643..2059260 Acidimicrobium ferrooxidans DSM 10331 8324061 YP_003110539.1 CDS Afer_1962 NC_013124.1 2059315 2060400 D KEGG: ace:Acel_2117 chaperone protein DnaJ; TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; chaperone protein DnaJ 2059315..2060400 Acidimicrobium ferrooxidans DSM 10331 8324062 YP_003110540.1 CDS Afer_1963 NC_013124.1 2060429 2060845 D PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: sen:SACE_7207 heat shock regulator; MerR family transcriptional regulator 2060429..2060845 Acidimicrobium ferrooxidans DSM 10331 8324063 YP_003110541.1 CDS Afer_1964 NC_013124.1 2060927 2063413 D KEGG: nfa:nfa54020 Clp protease ATP- binding subunit; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; ATPase associated with various cellular activities AAA_5; Clp domain protein; SMART: AAA ATPase; ATP-dependent chaperone ClpB 2060927..2063413 Acidimicrobium ferrooxidans DSM 10331 8324064 YP_003110542.1 CDS Afer_1965 NC_013124.1 2063460 2064635 R PFAM: amidohydrolase 2; KEGG: sen:SACE_3096 amidohydrolase 2; amidohydrolase 2 complement(2063460..2064635) Acidimicrobium ferrooxidans DSM 10331 8324065 YP_003110543.1 CDS Afer_1966 NC_013124.1 2064632 2065471 R PFAM: sugar isomerase (SIS); KEGG: bbt:BBta_3194 RpiR family transcriptional regulator; RpiR family transcriptional regulator complement(2064632..2065471) Acidimicrobium ferrooxidans DSM 10331 8324066 YP_003110544.1 CDS Afer_1967 NC_013124.1 2065468 2066835 R PFAM: glutamine synthetase catalytic region; KEGG: fra:Francci3_0315 L-glutamine synthetase; glutamine synthetase catalytic subunit complement(2065468..2066835) Acidimicrobium ferrooxidans DSM 10331 8324067 YP_003110545.1 CDS Afer_1968 NC_013124.1 2066979 2068466 D PFAM: amino acid permease-associated region; KEGG: mva:Mvan_2919 amino acid permease-associated region; amino acid permease-associated protein 2066979..2068466 Acidimicrobium ferrooxidans DSM 10331 8324068 YP_003110546.1 CDS Afer_1969 NC_013124.1 2068560 2070023 D PFAM: amino acid permease-associated region; KEGG: acr:Acry_0648 amino acid permease-associated region; amino acid permease-associated protein 2068560..2070023 Acidimicrobium ferrooxidans DSM 10331 8324069 YP_003110547.1 CDS Afer_1970 NC_013124.1 2070025 2071053 D PFAM: Acetamidase/Formamidase; KEGG: mva:Mvan_0644 acetamidase/formamidase; acetamidase/Formamidase 2070025..2071053 Acidimicrobium ferrooxidans DSM 10331 8324070 YP_003110548.1 CDS Afer_1971 NC_013124.1 2071341 2074595 D PFAM: glycosyl transferase family 2; KEGG: mpo:Mpop_1840 glycosyl transferase family 2; family 2 glycosyl transferase 2071341..2074595 Acidimicrobium ferrooxidans DSM 10331 8324071 YP_003110549.1 CDS Afer_1973 NC_013124.1 2075991 2076323 R PFAM: transposase IS3/IS911 family protein; KEGG: rxy:Rxyl_2226 transposase IS3/IS911; transposase IS3/IS911 family protein complement(2075991..2076323) Acidimicrobium ferrooxidans DSM 10331 8324073 YP_003110550.1 CDS Afer_1974 NC_013124.1 2076556 2079117 D PFAM: glycosyl transferase family 2; KEGG: met:M446_0315 glycosyl transferase family protein; family 2 glycosyl transferase 2076556..2079117 Acidimicrobium ferrooxidans DSM 10331 8324074 YP_003110551.1 CDS Afer_1975 NC_013124.1 2079503 2081794 R PFAM: glycosyl transferase group 1; KEGG: jan:Jann_4283 glycosyl transferase, group 1; group 1 glycosyl transferase complement(2079503..2081794) Acidimicrobium ferrooxidans DSM 10331 8324075 YP_003110552.1 CDS Afer_1976 NC_013124.1 2081796 2083421 R PFAM: glycosyl transferase group 1; KEGG: pap:PSPA7_6239 glycosyltransferase WbpX; group 1 glycosyl transferase complement(2081796..2083421) Acidimicrobium ferrooxidans DSM 10331 8324076 YP_003110553.1 CDS Afer_1977 NC_013124.1 2083700 2085667 R KEGG: aba:Acid345_3948 NHL repeat protein; hypothetical protein complement(2083700..2085667) Acidimicrobium ferrooxidans DSM 10331 8324077 YP_003110554.1 CDS Afer_1978 NC_013124.1 2085882 2087294 R PFAM: NAD(P) transhydrogenase beta subunit; KEGG: art:Arth_4084 NAD(P) transhydrogenase, beta subunit; NAD(P)(+) transhydrogenase (AB-specific) complement(2085882..2087294) Acidimicrobium ferrooxidans DSM 10331 8324078 YP_003110555.1 CDS Afer_1979 NC_013124.1 2087291 2087584 R KEGG: ace:Acel_2021 NAD/NADP transhydrogenase alpha subunit-like; NAD/NADP transhydrogenase alpha subunit-like protein complement(2087291..2087584) Acidimicrobium ferrooxidans DSM 10331 8324079 YP_003110556.1 CDS Afer_1980 NC_013124.1 2087614 2088711 R PFAM: alanine dehydrogenase/PNT domain protein; KEGG: ade:Adeh_3005 alanine dehydrogenase/PNT-like protein; alanine dehydrogenase/PNT domain-containing protein complement(2087614..2088711) Acidimicrobium ferrooxidans DSM 10331 8324080 YP_003110557.1 CDS Afer_1981 NC_013124.1 2088763 2089431 R PFAM: response regulator receiver; regulatory protein LuxR; Bacterio-opsin activator HTH domain protein; SMART: regulatory protein LuxR; response regulator receiver; KEGG: cms:CMS_0994 two-component system response regulator; LuxR family two component transcriptional regulator complement(2088763..2089431) Acidimicrobium ferrooxidans DSM 10331 8324081 YP_003110558.1 CDS Afer_1982 NC_013124.1 2089419 2090699 R PFAM: ATP-binding region ATPase domain protein; KEGG: kra:Krad_1351 integral membrane sensor signal transduction histidine kinase; signal transduction histidine kinase complement(2089419..2090699) Acidimicrobium ferrooxidans DSM 10331 8324082 YP_003110559.1 CDS Afer_1983 NC_013124.1 2090776 2092131 D PFAM: aminotransferase class-III; KEGG: nca:Noca_3921 aminotransferase; aminotransferase 2090776..2092131 Acidimicrobium ferrooxidans DSM 10331 8324083 YP_003110560.1 CDS Afer_1984 NC_013124.1 2092133 2093584 R catalyzes the formation of 2-oxoglutarate from isocitrate; isocitrate dehydrogenase complement(2092133..2093584) Acidimicrobium ferrooxidans DSM 10331 8324084 YP_003110561.1 CDS Afer_1985 NC_013124.1 2093812 2094228 D KEGG: sen:SACE_3654 hypothetical protein; hypothetical protein 2093812..2094228 Acidimicrobium ferrooxidans DSM 10331 8324085 YP_003110562.1 CDS Afer_1986 NC_013124.1 2094200 2096026 R PFAM: Ig family protein; KEGG: sus:Acid_0470 Ig family protein; hypothetical protein complement(2094200..2096026) Acidimicrobium ferrooxidans DSM 10331 8324086 YP_003110563.1 CDS Afer_1987 NC_013124.1 2096121 2097578 R TIGRFAM: glutamate synthase, NADH/NADPH, small subunit; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: mkm:Mkms_5153 glutamate synthase subunit beta; glutamate synthase, NADH/NADPH, small subunit complement(2096121..2097578) Acidimicrobium ferrooxidans DSM 10331 8324087 YP_003110564.1 CDS Afer_1988 NC_013124.1 2097644 2102137 R PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: ace:Acel_1078 glutamate synthase (NADH) large subunit; Glutamate synthase (ferredoxin) complement(2097644..2102137) Acidimicrobium ferrooxidans DSM 10331 8324088 YP_003110565.1 CDS Afer_1989 NC_013124.1 2102212 2102625 R KEGG: ace:Acel_0502 hypothetical protein; hypothetical protein complement(2102212..2102625) Acidimicrobium ferrooxidans DSM 10331 8324089 YP_003110566.1 CDS Afer_1990 NC_013124.1 2102808 2104004 D PFAM: Colicin V production protein; peptidase S1 and S6 chymotrypsin/Hap; KEGG: ace:Acel_1988 peptidase S1 and S6, chymotrypsin/Hap; Colicin V production protein 2102808..2104004 Acidimicrobium ferrooxidans DSM 10331 8324090 YP_003110567.1 CDS Afer_1991 NC_013124.1 2104102 2105034 D PFAM: beta-lactamase domain protein; KEGG: tfu:Tfu_2040 Zn-dependent hydrolase; beta-lactamase domain-containing protein 2104102..2105034 Acidimicrobium ferrooxidans DSM 10331 8324091 YP_003110568.1 CDS Afer_1992 NC_013124.1 2105031 2106215 D KEGG: nar:Saro_2348 peptidase M20D, amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerization domain protein; amidohydrolase 2105031..2106215 Acidimicrobium ferrooxidans DSM 10331 8324092 YP_003110569.1 CDS Afer_1993 NC_013124.1 2106212 2107651 D PFAM: protein of unknown function DUF195; KEGG: psa:PST_2781 hypothetical protein; hypothetical protein 2106212..2107651 Acidimicrobium ferrooxidans DSM 10331 8324093 YP_003110570.1 CDS Afer_1994 NC_013124.1 2107648 2108508 D KEGG: tfu:Tfu_0354 3-mercaptopyruvate sulfurtransferase; PFAM: Rhodanese domain protein; SMART: Rhodanese domain protein; 3-mercaptopyruvate sulfurtransferase 2107648..2108508 Acidimicrobium ferrooxidans DSM 10331 8324094 YP_003110571.1 CDS Afer_1995 NC_013124.1 2108845 2110290 D TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: afe:Lferr_2531 ammonium transporter; ammonium transporter 2108845..2110290 Acidimicrobium ferrooxidans DSM 10331 8324095 YP_003110572.1 CDS Afer_1996 NC_013124.1 2110440 2111162 D SMART: Rhodanese domain protein; KEGG: mpa:MAP2046 SseB; Rhodanese domain-containing protein 2110440..2111162 Acidimicrobium ferrooxidans DSM 10331 8324096 YP_003110573.1 CDS Afer_1997 NC_013124.1 2111775 2112827 D PFAM: ribonuclease BN; KEGG: ace:Acel_1654 ribonuclease BN; ribonuclease BN 2111775..2112827 Acidimicrobium ferrooxidans DSM 10331 8324097 YP_003110574.1 CDS Afer_1999 NC_013124.1 2114775 2115791 R KEGG: art:Arth_4396 hypothetical protein; hypothetical protein complement(2114775..2115791) Acidimicrobium ferrooxidans DSM 10331 8324099 YP_003110575.1 CDS Afer_2000 NC_013124.1 2115940 2117583 R PFAM: amino acid permease-associated region; KEGG: msm:MSMEG_6701 amino acid permease; amino acid permease-associated protein complement(2115940..2117583) Acidimicrobium ferrooxidans DSM 10331 8324100 YP_003110576.1 CDS Afer_2001 NC_013124.1 2117776 2118048 R hypothetical protein complement(2117776..2118048) Acidimicrobium ferrooxidans DSM 10331 8324101 YP_003110577.1 CDS Afer_2002 NC_013124.1 2118045 2119559 R PFAM: FAD linked oxidase domain protein; KEGG: pth:PTH_2230 FAD/FMN-containing dehydrogenases; FAD linked oxidase domain-containing protein complement(2118045..2119559) Acidimicrobium ferrooxidans DSM 10331 8324102 YP_003110578.1 CDS Afer_2003 NC_013124.1 2119556 2120794 R PFAM: protein of unknown function DUF224 cysteine- rich region domain protein; KEGG: afu:AF0506 iron-sulfur binding reductase; hypothetical protein complement(2119556..2120794) Acidimicrobium ferrooxidans DSM 10331 8324103 YP_003110579.1 CDS Afer_2004 NC_013124.1 2120900 2121637 D PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: msm:MSMEG_6700 regulatory protein; GntR family transcriptional regulator 2120900..2121637 Acidimicrobium ferrooxidans DSM 10331 8324104 YP_003110580.1 CDS Afer_2005 NC_013124.1 2121634 2122296 D KEGG: mva:Mvan_1847 hypothetical protein; hypothetical protein 2121634..2122296 Acidimicrobium ferrooxidans DSM 10331 8324105 YP_003110581.1 CDS Afer_2006 NC_013124.1 2122293 2125877 R PFAM: cellulose-binding family II; glycoside hydrolase family 5; SMART: cellulose-binding family II; KEGG: bte:BTH_I2402 glycosy hydrolase family protein; cellulose-binding family protein complement(2122293..2125877) Acidimicrobium ferrooxidans DSM 10331 8324106 YP_003110582.1 CDS Afer_2007 NC_013124.1 2126001 2127155 R TIGRFAM: CRISPR-associated protein, NE0113 family; KEGG: neu:NE0113 hypothetical protein; CRISPR-associated protein complement(2126001..2127155) Acidimicrobium ferrooxidans DSM 10331 8324107 YP_003110583.1 CDS Afer_2008 NC_013124.1 2127470 2127916 R PFAM: Transcription regulator MerR DNA binding; regulatory protein MerR; SMART: regulatory protein MerR; KEGG: nca:Noca_1646 MerR family transcriptional regulator; MerR family transcriptional regulator complement(2127470..2127916) Acidimicrobium ferrooxidans DSM 10331 8324108 YP_003110584.1 CDS Afer_2009 NC_013124.1 2128009 2129424 D PFAM: pyridine nucleotide-disulphide oxidoreductase dimerization region; FAD-dependent pyridine nucleotide- disulphide oxidoreductase; KEGG: ace:Acel_0690 mercuric reductase; pyridine nucleotide-disulfide oxidoreductase dimerization subunit 2128009..2129424 Acidimicrobium ferrooxidans DSM 10331 8324109 YP_003110585.1 CDS Afer_2010 NC_013124.1 2129668 2130090 R KEGG: cms:CMS_2164 hypothetical protein; hypothetical protein complement(2129668..2130090) Acidimicrobium ferrooxidans DSM 10331 8324110 YP_003110586.1 CDS Afer_2011 NC_013124.1 2130157 2130372 R hypothetical protein complement(2130157..2130372) Acidimicrobium ferrooxidans DSM 10331 8324111 YP_003110587.1 CDS Afer_2012 NC_013124.1 2130796 2132304 D PFAM: deoxyribodipyrimidine photolyase-related protein; DNA photolyase FAD-binding; KEGG: cyb:CYB_1949 deoxyribodipyrimidine photolyase family protein; deoxyribodipyrimidine photolyase-like protein 2130796..2132304 Acidimicrobium ferrooxidans DSM 10331 8324112 YP_003110588.1 CDS Afer_2014 NC_013124.1 2133070 2133963 R PFAM: Integrase catalytic region; KEGG: mva:Mvan_1111 integrase catalytic subunit; integrase catalytic subunit complement(2133070..2133963) Acidimicrobium ferrooxidans DSM 10331 8324114 YP_003110589.1 CDS Afer_2015 NC_013124.1 2134014 2134292 R PFAM: transposase IS3/IS911 family protein; KEGG: mjl:Mjls_4451 transposase IS3/IS911 family protein; transposase IS3/IS911 family protein complement(2134014..2134292) Acidimicrobium ferrooxidans DSM 10331 8324115 YP_003110590.1 CDS Afer_2016 NC_013124.1 2134353 2134691 R KEGG: mbb:BCG_0673 hypothetical protein; hypothetical protein complement(2134353..2134691) Acidimicrobium ferrooxidans DSM 10331 8324116 YP_003110591.1 CDS Afer_2017 NC_013124.1 2134688 2134915 R KEGG: mpa:MAP2028c hypothetical protein; hypothetical protein complement(2134688..2134915) Acidimicrobium ferrooxidans DSM 10331 8324117 YP_003110592.1 CDS Afer_2018 NC_013124.1 2135403 2135873 R PFAM: CMP/dCMP deaminase zinc-binding; KEGG: vei:Veis_2620 CMP/dCMP deaminase, zinc- binding; zinc-binding CMP/dCMP deaminase complement(2135403..2135873) Acidimicrobium ferrooxidans DSM 10331 8324120 YP_003110593.1 CDS Afer_2019 NC_013124.1 2135860 2136243 R KEGG: spl:Spea_0584 CutA1 divalent ion tolerance protein; hypothetical protein complement(2135860..2136243) Acidimicrobium ferrooxidans DSM 10331 8324121 YP_003110594.1 CDS Afer_2020 NC_013124.1 2137295 2137657 R hypothetical protein complement(2137295..2137657) Acidimicrobium ferrooxidans DSM 10331 8324123 YP_003110595.1 CDS Afer_2021 NC_013124.1 2137654 2138517 R PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: pas:Pars_0521 extradiol ring-cleavage dioxygenase III subunit B; Extradiol ring-cleavage dioxygenase class III protein subunit B complement(2137654..2138517) Acidimicrobium ferrooxidans DSM 10331 8324124 YP_003110596.1 CDS Afer_2022 NC_013124.1 2138539 2139342 R KEGG: msm:MSMEG_4035 citrate synthase; citrate synthase complement(2138539..2139342) Acidimicrobium ferrooxidans DSM 10331 8324125 YP_003110597.1 CDS Afer_2023 NC_013124.1 2139339 2140523 R PFAM: L-carnitine dehydratase/bile acid-inducible protein F; KEGG: krh:KRH_05070 L-carnitine dehydratase/bile acid-inducible protein F family protein; L-carnitine dehydratase/bile acid-inducible protein F complement(2139339..2140523) Acidimicrobium ferrooxidans DSM 10331 8324126 YP_003110598.1 CDS Afer_2024 NC_013124.1 2140632 2141477 R PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: cgt:cgR_2273 hypothetical protein; IclR family transcriptional regulator complement(2140632..2141477) Acidimicrobium ferrooxidans DSM 10331 8324127 YP_003110599.1 CDS Afer_2025 NC_013124.1 2141653 2143167 D PFAM: amidohydrolase; Amidohydrolase 3; KEGG: rxy:Rxyl_0206 hypothetical protein; amidohydrolase 2141653..2143167 Acidimicrobium ferrooxidans DSM 10331 8324128 YP_003110600.1 CDS Afer_2026 NC_013124.1 2143594 2144061 D KEGG: sma:SAV_6532 hypothetical protein; hypothetical protein 2143594..2144061 Acidimicrobium ferrooxidans DSM 10331 8324129 YP_003110601.1 CDS Afer_2027 NC_013124.1 2144096 2145616 D PFAM: major facilitator superfamily MFS_1; KEGG: ace:Acel_1673 EmrB/QacA family drug resistance transporter; major facilitator superfamily protein 2144096..2145616 Acidimicrobium ferrooxidans DSM 10331 8324130 YP_003110602.1 CDS Afer_2028 NC_013124.1 2145675 2145911 R KEGG: GI22175 gene product from transcript GI22175- RA; hypothetical protein complement(2145675..2145911) Acidimicrobium ferrooxidans DSM 10331 8324131 YP_003110603.1 CDS Afer_2029 NC_013124.1 2146066 2149758 R PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: kra:Krad_1516 ABC transporter-related protein; ABC transporter-like protein complement(2146066..2149758) Acidimicrobium ferrooxidans DSM 10331 8324132 YP_003110604.1 CDS Afer_2030 NC_013124.1 2150078 2150998 R KEGG: ace:Acel_2154 chromosome segregation DNA- binding protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease; parB-like partition protein complement(2150078..2150998) Acidimicrobium ferrooxidans DSM 10331 8324133 YP_003110605.1 CDS Afer_2031 NC_013124.1 2150991 2151752 R PFAM: Cobyrinic acid ac-diamide synthase; KEGG: cth:Cthe_2377 chromosome segregation ATPase; Cobyrinic acid ac-diamide synthase complement(2150991..2151752) Acidimicrobium ferrooxidans DSM 10331 8324134 YP_003110606.1 CDS Afer_2032 NC_013124.1 2152455 2153981 R PFAM: transposase IS4 family protein; KEGG: mgi:Mflv_2204 transposase, IS4 family protein; transposase IS4 family protein complement(2152455..2153981) Acidimicrobium ferrooxidans DSM 10331 8324135 YP_003110607.1 CDS Afer_2033 NC_013124.1 2154799 2155455 R PFAM: glucose inhibited division protein; KEGG: similar to glucose inhibited division protein B (gidB); K03501 glucose inhibited division protein B; glucose inhibited division protein complement(2154799..2155455) Acidimicrobium ferrooxidans DSM 10331 8324136 YP_003110608.1 CDS Afer_2034 NC_013124.1 2155430 2156275 R PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: efa:EF3330 jag protein; single-stranded nucleic acid binding R3H domain-containing protein complement(2155430..2156275) Acidimicrobium ferrooxidans DSM 10331 8324137 YP_003110609.1 CDS Afer_2035 NC_013124.1 2156307 2157317 R PFAM: 60 kDa inner membrane insertion protein; KEGG: rrs:RoseRS_3965 60 kDa inner membrane insertion protein; 60 kDa inner membrane insertion protein complement(2156307..2157317) Acidimicrobium ferrooxidans DSM 10331 8324138 YP_003110610.1 CDS Afer_2036 NC_013124.1 2157314 2157580 R PFAM: protein of unknown function DUF37; KEGG: abb:ABBFA_003529 hypothetical protein; hypothetical protein complement(2157314..2157580) Acidimicrobium ferrooxidans DSM 10331 8324139 YP_003110611.1 CDS Afer_2037 NC_013124.1 2157577 2157930 R KEGG: rec:RHECIAT_CH0000479 ribonuclease P protein; ribonuclease P protein complement(2157577..2157930) Acidimicrobium ferrooxidans DSM 10331 8324140 YP_003110612.1 CDS Afer_2038 NC_013124.1 2157931 2158065 R TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: fra:Francci3_4548 50S ribosomal protein L34; 50S ribosomal protein L34 complement(2157931..2158065) Acidimicrobium ferrooxidans DSM 10331 8324141 Afer_R0001 tRNA Afer_R0001 NC_013124.1 34016 34092 D tRNA-Ile 34016..34092 Acidimicrobium ferrooxidans DSM 10331 8322079 Afer_R0002 tRNA Afer_R0002 NC_013124.1 51268 51341 D tRNA-Gly 51268..51341 Acidimicrobium ferrooxidans DSM 10331 8322100 Afer_R0003 tRNA Afer_R0003 NC_013124.1 96722 96808 D tRNA-Leu 96722..96808 Acidimicrobium ferrooxidans DSM 10331 8322141 Afer_R0004 tRNA Afer_R0004 NC_013124.1 99756 99847 R tRNA-Ser complement(99756..99847) Acidimicrobium ferrooxidans DSM 10331 8322144 Afer_R0005 tRNA Afer_R0005 NC_013124.1 102441 102527 R tRNA-Ser complement(102441..102527) Acidimicrobium ferrooxidans DSM 10331 8322147 Afer_R0006 tRNA Afer_R0006 NC_013124.1 108980 109064 R tRNA-Ser complement(108980..109064) Acidimicrobium ferrooxidans DSM 10331 8322153 Afer_R0008 tRNA Afer_R0008 NC_013124.1 240048 240124 R tRNA-Pro complement(240048..240124) Acidimicrobium ferrooxidans DSM 10331 8322289 Afer_R0009 tRNA Afer_R0009 NC_013124.1 291810 291881 R tRNA-Thr complement(291810..291881) Acidimicrobium ferrooxidans DSM 10331 8322338 Afer_R0010 tRNA Afer_R0010 NC_013124.1 392035 392117 D tRNA-Tyr 392035..392117 Acidimicrobium ferrooxidans DSM 10331 8322435 Afer_R0011 tRNA Afer_R0011 NC_013124.1 394991 395066 D tRNA-Thr 394991..395066 Acidimicrobium ferrooxidans DSM 10331 8322439 Afer_R0012 tRNA Afer_R0012 NC_013124.1 395068 395144 D tRNA-Met 395068..395144 Acidimicrobium ferrooxidans DSM 10331 8322440 Afer_R0013 tRNA Afer_R0013 NC_013124.1 396011 396083 D tRNA-Trp 396011..396083 Acidimicrobium ferrooxidans DSM 10331 8322443 Afer_R0014 tRNA Afer_R0014 NC_013124.1 626867 626943 R tRNA-Val complement(626867..626943) Acidimicrobium ferrooxidans DSM 10331 8322680 Afer_R0015 tRNA Afer_R0015 NC_013124.1 769960 770033 D tRNA-Pro 769960..770033 Acidimicrobium ferrooxidans DSM 10331 8322820 Afer_R0016 tRNA Afer_R0016 NC_013124.1 770047 770120 D tRNA-Gly 770047..770120 Acidimicrobium ferrooxidans DSM 10331 8322821 Afer_R0017 tRNA Afer_R0017 NC_013124.1 806273 806348 R tRNA-Arg complement(806273..806348) Acidimicrobium ferrooxidans DSM 10331 8322858 Afer_R0018 tRNA Afer_R0018 NC_013124.1 886689 886761 D tRNA-Gly 886689..886761 Acidimicrobium ferrooxidans DSM 10331 8322929 Afer_R0019 tRNA Afer_R0019 NC_013124.1 1100600 1100675 D tRNA-Gln 1100600..1100675 Acidimicrobium ferrooxidans DSM 10331 8323126 Afer_R0024 tRNA Afer_R0024 NC_013124.1 1127356 1127438 R tRNA-Leu complement(1127356..1127438) Acidimicrobium ferrooxidans DSM 10331 8323152 Afer_R0025 tRNA Afer_R0025 NC_013124.1 1197218 1197304 D tRNA-Leu 1197218..1197304 Acidimicrobium ferrooxidans DSM 10331 8323218 Afer_R0026 tRNA Afer_R0026 NC_013124.1 1213014 1213087 D tRNA-Cys 1213014..1213087 Acidimicrobium ferrooxidans DSM 10331 8323234 Afer_R0027 tRNA Afer_R0027 NC_013124.1 1215814 1215889 D tRNA-Val 1215814..1215889 Acidimicrobium ferrooxidans DSM 10331 8323237 Afer_R0028 tRNA Afer_R0028 NC_013124.1 1238090 1238164 R tRNA-Arg complement(1238090..1238164) Acidimicrobium ferrooxidans DSM 10331 8323258 Afer_R0029 tRNA Afer_R0029 NC_013124.1 1315382 1315457 R tRNA-Met complement(1315382..1315457) Acidimicrobium ferrooxidans DSM 10331 8323333 Afer_R0030 tRNA Afer_R0030 NC_013124.1 1315538 1315610 R tRNA-Asn complement(1315538..1315610) Acidimicrobium ferrooxidans DSM 10331 8323334 Afer_R0031 tRNA Afer_R0031 NC_013124.1 1366330 1366403 R tRNA-Ala complement(1366330..1366403) Acidimicrobium ferrooxidans DSM 10331 8323390 Afer_R0032 tRNA Afer_R0032 NC_013124.1 1372332 1372404 R tRNA-OTHER complement(1372332..1372404) Acidimicrobium ferrooxidans DSM 10331 8323399 Afer_R0033 tRNA Afer_R0033 NC_013124.1 1377008 1377082 D tRNA-Lys 1377008..1377082 Acidimicrobium ferrooxidans DSM 10331 8323402 Afer_R0034 tRNA Afer_R0034 NC_013124.1 1390215 1390291 D tRNA-His 1390215..1390291 Acidimicrobium ferrooxidans DSM 10331 8323414 Afer_R0035 tRNA Afer_R0035 NC_013124.1 1398247 1398324 R tRNA-Pro complement(1398247..1398324) Acidimicrobium ferrooxidans DSM 10331 8323423 Afer_R0036 tRNA Afer_R0036 NC_013124.1 1443021 1443093 R tRNA-Lys complement(1443021..1443093) Acidimicrobium ferrooxidans DSM 10331 8323467 Afer_R0037 tRNA Afer_R0037 NC_013124.1 1468970 1469046 D tRNA-Val 1468970..1469046 Acidimicrobium ferrooxidans DSM 10331 8323489 Afer_R0039 tRNA Afer_R0039 NC_013124.1 1590693 1590765 R tRNA-Glu complement(1590693..1590765) Acidimicrobium ferrooxidans DSM 10331 8323607 Afer_R0040 tRNA Afer_R0040 NC_013124.1 1599961 1600035 D tRNA-Gln 1599961..1600035 Acidimicrobium ferrooxidans DSM 10331 8323614 Afer_R0045 tRNA Afer_R0045 NC_013124.1 1642632 1642713 R tRNA-Leu complement(1642632..1642713) Acidimicrobium ferrooxidans DSM 10331 8323652 Afer_R0046 tRNA Afer_R0046 NC_013124.1 1838446 1838530 D tRNA-Leu 1838446..1838530 Acidimicrobium ferrooxidans DSM 10331 8323841 Afer_R0048 tRNA Afer_R0048 NC_013124.1 1900921 1900995 D tRNA-Arg 1900921..1900995 Acidimicrobium ferrooxidans DSM 10331 8323909 Afer_R0049 tRNA Afer_R0049 NC_013124.1 1940714 1940789 D tRNA-Ala 1940714..1940789 Acidimicrobium ferrooxidans DSM 10331 8323950 Afer_R0050 tRNA Afer_R0050 NC_013124.1 1956203 1956279 R tRNA-Met complement(1956203..1956279) Acidimicrobium ferrooxidans DSM 10331 8323966 Afer_R0051 tRNA Afer_R0051 NC_013124.1 2004660 2004732 R tRNA-Thr complement(2004660..2004732) Acidimicrobium ferrooxidans DSM 10331 8324015 Afer_R0052 tRNA Afer_R0052 NC_013124.1 2033929 2034004 D tRNA-Glu 2033929..2034004 Acidimicrobium ferrooxidans DSM 10331 8324038 Afer_R0053 tRNA Afer_R0053 NC_013124.1 2035625 2035699 D tRNA-Asp 2035625..2035699 Acidimicrobium ferrooxidans DSM 10331 8324040 Afer_R0054 tRNA Afer_R0054 NC_013124.1 2035725 2035800 D tRNA-Phe 2035725..2035800 Acidimicrobium ferrooxidans DSM 10331 8324041 Afer_R0055 tRNA Afer_R0055 NC_013124.1 2134973 2135045 R tRNA-Ala complement(2134973..2135045) Acidimicrobium ferrooxidans DSM 10331 8324118 Afer_R0056 tRNA Afer_R0056 NC_013124.1 2135279 2135365 R tRNA-Ser complement(2135279..2135365) Acidimicrobium ferrooxidans DSM 10331 8324119 Afer_R0057 tRNA Afer_R0057 NC_013124.1 2136289 2136364 D tRNA-Arg 2136289..2136364 Acidimicrobium ferrooxidans DSM 10331 8324122 Afer_R0020 rRNA Afer_R0020 NC_013124.1 1113737 1113852 R 5S ribosomal RNA complement(1113737..1113852) Acidimicrobium ferrooxidans DSM 10331 8323140 Afer_R0021 rRNA Afer_R0021 NC_013124.1 1113738 1113854 R 5S ribosomal RNA complement(1113738..1113854) Acidimicrobium ferrooxidans DSM 10331 8323141 Afer_R0022 rRNA Afer_R0022 NC_013124.1 1113897 1116889 R 23S ribosomal RNA complement(1113897..1116889) Acidimicrobium ferrooxidans DSM 10331 8323142 Afer_R0023 rRNA Afer_R0023 NC_013124.1 1117010 1118507 R 16S ribosomal RNA complement(1117010..1118507) Acidimicrobium ferrooxidans DSM 10331 8323143 Afer_R0041 rRNA Afer_R0041 NC_013124.1 1613642 1613757 R 5S ribosomal RNA complement(1613642..1613757) Acidimicrobium ferrooxidans DSM 10331 8323627 Afer_R0042 rRNA Afer_R0042 NC_013124.1 1613643 1613759 R 5S ribosomal RNA complement(1613643..1613759) Acidimicrobium ferrooxidans DSM 10331 8323628 Afer_R0043 rRNA Afer_R0043 NC_013124.1 1613802 1616794 R 23S ribosomal RNA complement(1613802..1616794) Acidimicrobium ferrooxidans DSM 10331 8323629 Afer_R0044 rRNA Afer_R0044 NC_013124.1 1616915 1618412 R 16S ribosomal RNA complement(1616915..1618412) Acidimicrobium ferrooxidans DSM 10331 8323630