-- dump date 20240506_001443 -- class Genbank::Contig -- table contig_comment -- id comment NC_013124.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP001631.1.REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START##REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, ArachneREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequenceREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: ProdigalREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in IcelandREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: IcelandREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: AerobeREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shapedREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: MotileREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: NonsporulatingREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: ThermophileREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48CREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh waterREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizerREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: AutotrophREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END##REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998 CDSs (with protein) :: 1,998REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998 CDSs (with protein) :: 1,998 Genes (RNA) :: 55REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998 CDSs (with protein) :: 1,998 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998 CDSs (with protein) :: 1,998 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998 CDSs (with protein) :: 1,998 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 46REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998 CDSs (with protein) :: 1,998 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 3REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998 CDSs (with protein) :: 1,998 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 3 Pseudo Genes (total) :: 20REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998 CDSs (with protein) :: 1,998 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 3 Pseudo Genes (total) :: 20 CDSs (without protein) :: 20REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998 CDSs (with protein) :: 1,998 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 3 Pseudo Genes (total) :: 20 CDSs (without protein) :: 20 Pseudo Genes (ambiguous residues) :: 0 of 20REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998 CDSs (with protein) :: 1,998 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 3 Pseudo Genes (total) :: 20 CDSs (without protein) :: 20 Pseudo Genes (ambiguous residues) :: 0 of 20 Pseudo Genes (frameshifted) :: 4 of 20REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998 CDSs (with protein) :: 1,998 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 3 Pseudo Genes (total) :: 20 CDSs (without protein) :: 20 Pseudo Genes (ambiguous residues) :: 0 of 20 Pseudo Genes (frameshifted) :: 4 of 20 Pseudo Genes (incomplete) :: 16 of 20REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998 CDSs (with protein) :: 1,998 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 3 Pseudo Genes (total) :: 20 CDSs (without protein) :: 20 Pseudo Genes (ambiguous residues) :: 0 of 20 Pseudo Genes (frameshifted) :: 4 of 20 Pseudo Genes (incomplete) :: 16 of 20 Pseudo Genes (internal stop) :: 3 of 20REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998 CDSs (with protein) :: 1,998 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 3 Pseudo Genes (total) :: 20 CDSs (without protein) :: 20 Pseudo Genes (ambiguous residues) :: 0 of 20 Pseudo Genes (frameshifted) :: 4 of 20 Pseudo Genes (incomplete) :: 16 of 20 Pseudo Genes (internal stop) :: 3 of 20 Pseudo Genes (multiple problems) :: 3 of 20REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998 CDSs (with protein) :: 1,998 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 3 Pseudo Genes (total) :: 20 CDSs (without protein) :: 20 Pseudo Genes (ambiguous residues) :: 0 of 20 Pseudo Genes (frameshifted) :: 4 of 20 Pseudo Genes (incomplete) :: 16 of 20 Pseudo Genes (internal stop) :: 3 of 20 Pseudo Genes (multiple problems) :: 3 of 20 CRISPR Arrays :: 2REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998 CDSs (with protein) :: 1,998 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 3 Pseudo Genes (total) :: 20 CDSs (without protein) :: 20 Pseudo Genes (ambiguous residues) :: 0 of 20 Pseudo Genes (frameshifted) :: 4 of 20 Pseudo Genes (incomplete) :: 16 of 20 Pseudo Genes (internal stop) :: 3 of 20 Pseudo Genes (multiple problems) :: 3 of 20 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP001631.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4083228 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-PGF Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##Metadata-START## Organism Display Name :: Acidimicrobium ferrooxidans ICP, DSM 10331 Culture Collection ID :: DSM 10331 GOLD Stamp ID :: Gc01023 Funding Program :: DOE-GEBA 2007 Assembly Method :: Newbler, Arachne Sequencing Depth :: 6.8x Sanger; 52.9x pyrosequence Gene Calling Method :: Prodigal Isolation Site :: Hot spring run-off in Iceland Collection Date :: before 1993 Isolation Country :: Iceland Latitude :: 63.93 Longitude :: -22.1 Oxygen Requirement :: Aerobe Cell Shape :: Rod-shaped Motility :: Motile Sporulation :: Nonsporulating Temperature Range :: Thermophile Temperature Optimum :: 48C Gram Staining :: gram+ Biotic Relationship :: Free living Diseases :: None Habitat :: Fresh water Phenotypes :: Acidophile, Iron oxidizer Energy Source :: Autotroph ##Metadata-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:15:41 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,073 CDSs (total) :: 2,018 Genes (coding) :: 1,998 CDSs (with protein) :: 1,998 Genes (RNA) :: 55 rRNAs :: 2, 2, 2 (5S, 16S, 23S) complete rRNAs :: 2, 2, 2 (5S, 16S, 23S) tRNAs :: 46 ncRNAs :: 3 Pseudo Genes (total) :: 20 CDSs (without protein) :: 20 Pseudo Genes (ambiguous residues) :: 0 of 20 Pseudo Genes (frameshifted) :: 4 of 20 Pseudo Genes (incomplete) :: 16 of 20 Pseudo Genes (internal stop) :: 3 of 20 Pseudo Genes (multiple problems) :: 3 of 20 CRISPR Arrays :: 2 ##Genome-Annotation-Data-END## COMPLETENESS: full length.