-- dump date 20140618_184441 -- class Genbank::CDS -- table cds_note -- id note YP_003397726.1 KEGG: aac:Aaci_0001 chromosomal replication initiator protein DnaA; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase YP_003397727.1 KEGG: CG3493 gene product from transcript CG3493-RA YP_003397728.1 KEGG: cno:NT01CX_0867 chromosomal replication initiation protein; TIGRFAM: chromosomal replication initiator protein DnaA; PFAM: Chromosomal replication initiator DnaA; Chromosomal replication initiator DnaA domain; SMART: Chromosomal replication initiator DnaA domain; AAA ATPase YP_003397729.1 KEGG: tte:TTE0002 DNA polymerase III subunit beta; TIGRFAM: DNA polymerase III, beta subunit; PFAM: DNA polymerase III beta chain; SMART: DNA polymerase III beta chain YP_003397730.1 TIGRFAM: DNA replication and repair protein RecF; PFAM: SMC domain protein; KEGG: bbe:BBR47_00040 DNA replication and repair protein F YP_003397731.1 PFAM: protein of unknown function DUF721; KEGG: cef:CE0005 hypothetical protein YP_003397732.1 KEGG: chy:CHY_2706 hypothetical protein YP_003397733.1 KEGG: tpd:Teth39_0010 DNA gyrase subunit B; TIGRFAM: DNA gyrase, B subunit; PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein; ATP-binding region ATPase domain protein; TOPRIM domain protein; DNA gyrase subunit B domain protein; SMART: DNA topoisomerase II; ATP-binding region ATPase domain protein YP_003397734.1 TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase catalytic region; KEGG: dhd:Dhaf_3841 thiamine pyrophosphokinase YP_003397735.1 PFAM: protein of unknown function DUF81; KEGG: bcg:BCG9842_B4966 hypothetical protein YP_003397736.1 KEGG: chy:CHY_2704 DNA gyrase, A subunit; TIGRFAM: DNA gyrase, A subunit; PFAM: DNA gyrase/topoisomerase IV subunit A; DNA gyrase repeat beta-propeller; SMART: DNA gyrase/topoisomerase IV subunit A YP_003397737.1 KEGG: bwe:BcerKBAB4_0693 hypothetical protein YP_003397738.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpu:BPUM_3485 transcriptional regulator YP_003397739.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: apv:Apar_1191 malate dehydrogenase (oxaloacetate-decarboxylating) YP_003397740.1 PFAM: Extracellular ligand-binding receptor; KEGG: gtn:GTNG_2930 branched chain amino acid ABC transporter amino acid-binding protein YP_003397741.1 PFAM: inner-membrane translocator; KEGG: drm:Dred_2239 inner-membrane translocator YP_003397742.1 PFAM: inner-membrane translocator; KEGG: hmo:HM1_0492 branched-chain amino acid abc transporter, permease protein YP_003397743.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: drm:Dred_2237 ABC transporter related YP_003397744.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hmo:HM1_0494 branched-chain amino acid abc transporter, ATP-binding protein YP_003397745.1 PFAM: hypothetical protein; amino acid- binding ACT domain protein; SMART: hypothetical protein; KEGG: smu:SMU.1664c putative acetoin utilization protein, acetoin dehydrogenase YP_003397746.1 PFAM: protein of unknown function DUF951; KEGG: cpy:Cphy_3775 hypothetical protein YP_003397748.1 PFAM: protein of unknown function DUF805; KEGG: ppr:PBPRA1415 hypothetical protein YP_003397749.1 KEGG: aca:ACP_1735 hypothetical protein YP_003397750.1 PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: ctc:CTC01203 HAD superfamily hydrolase YP_003397751.1 PFAM: Ferritin Dps family protein; KEGG: dhd:Dhaf_2260 ferritin Dps family protein YP_003397752.1 PFAM: NUDIX hydrolase; KEGG: lrl:LC705_00607 hydrolase, NUDIX family YP_003397753.1 PFAM: AbgT putative transporter; KEGG: cdf:CD2835 putative aminobenzoyl-glutamate transport protein YP_003397754.1 KEGG: cdf:CD1086 putative peptidase; TIGRFAM: amidohydrolase; PFAM: peptidase M20 YP_003397755.1 KEGG: hmo:HM1_0460 glutamate racemase, putative; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_003397756.1 KEGG: Os06g0589300; hypothetical protein YP_003397757.1 KEGG: dhd:Dhaf_2424 signal transduction histidine kinase regulating citrate/malate metabolism YP_003397758.1 PFAM: response regulator receiver; LytTr DNA- binding region; SMART: response regulator receiver; KEGG: dhd:Dhaf_2425 two component transcriptional regulator, LytTR family YP_003397759.1 PFAM: S-layer domain protein; YadA domain protein; Haemagluttinin domain protein; Gp5 domain protein; KEGG: sep:SE2249 streptococcal hemagglutinin protein YP_003397760.1 TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase; PFAM: tRNA methyl transferase-like; KEGG: cdf:CD1281 putative tRNA (5-methylaminomethyl- 2-thiouridylate)-methyltransferase YP_003397761.1 PFAM: aminotransferase class V; KEGG: tpd:Teth39_0280 cysteine desulfurase YP_003397762.1 TIGRFAM: ribosomal protein S6; PFAM: Ribosomal protein S6, bacterial-like; KEGG: drm:Dred_3308 30S ribosomal protein S6 YP_003397763.1 TIGRFAM: single-strand binding protein; PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: pjd:Pjdr2_6272 single-strand binding protein YP_003397764.1 TIGRFAM: ribosomal protein S18; PFAM: ribosomal protein S18; KEGG: dhd:Dhaf_4934 ribosomal protein S18 YP_003397765.1 PFAM: Protein of unknown function DUF2232, membrane; KEGG: chy:CHY_0038 hypothetical protein YP_003397766.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; SMART: GGDEF domain containing protein; KEGG: cth:Cthe_2258 phosphoesterase, RecJ-like protein YP_003397767.1 TIGRFAM: ribosomal protein L9; PFAM: Ribosomal protein L9-like; KEGG: chy:CHY_0039 ribosomal protein L9 YP_003397768.1 KEGG: hmo:HM1_0975 replicative DNA helicase; TIGRFAM: replicative DNA helicase; PFAM: DnaB domain protein helicase domain protein; SMART: AAA ATPase YP_003397769.1 TIGRFAM: adenylosuccinate lyase; PFAM: fumarate lyase; Adenylosuccinate lyase-like; KEGG: bhy:BHWA1_00426 adenylosuccinate lyase YP_003397770.1 KEGG: bhy:BHWA1_01817 adenylosuccinate synthase; TIGRFAM: adenylosuccinate synthetase; PFAM: adenylosuccinate synthetase; SMART: adenylosuccinate synthetase YP_003397771.1 TIGRFAM: sodium/glutamate symporter; PFAM: sodium/glutamate symporter; KEGG: fnu:FN1801 sodium/glutamate symport carrier protein YP_003397772.1 TIGRFAM: YidE/YbjL duplication; PFAM: YidE/YbjL duplication domain protein; KEGG: fnu:FN1450 integral membrane protein YP_003397773.1 PFAM: glutaminase, core; KEGG: cpr:CPR_1963 glutaminase YP_003397774.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: apr:Apre_0099 amino acid carrier protein YP_003397775.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: ere:EUBREC_1085 hydrogen peroxide-inducible genes activator YP_003397776.1 PFAM: formate/nitrite transporter; KEGG: fma:FMG_0291 putative formate/nitrite transporter YP_003397777.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: dhd:Dhaf_3921 iron-containing alcohol dehydrogenase YP_003397778.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: shi:Shel_23190 predicted permease YP_003397779.1 PFAM: protein of unknown function DUF1653; KEGG: ere:EUBREC_0984 hypothetical protein YP_003397780.1 PFAM: BioY protein; KEGG: dae:Dtox_4332 BioY protein YP_003397781.1 TIGRFAM: dethiobiotin synthase; KEGG: bhy:BHWA1_02061 dethiobiotin synthetase YP_003397782.1 TIGRFAM: adenosylmethionine-8-amino-7-oxononanoate aminotransferase; PFAM: aminotransferase class-III; KEGG: amu:Amuc_0493 adenosylmethionine-8-amino-7- oxononanoate aminotransferase YP_003397783.1 PFAM: peptidase M24; KEGG: cth:Cthe_0541 peptidase M24 YP_003397785.1 PFAM: protein of unknown function DUF204; KEGG: dhd:Dhaf_2300 protein of unknown function DUF204 YP_003397786.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: dds:Ddes_2317 DNA-directed DNA polymerase YP_003397787.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: bay:RBAM_037640 hypothetical protein YP_003397788.1 KEGG: cbe:Cbei_0766 O-acetylhomoserine/O- acetylserine sulfhydrylase; TIGRFAM: O-acetylhomoserine/O-acetylserine sulfhydrylase; PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein YP_003397789.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpy:Cphy_3173 MATE efflux family protein YP_003397790.1 TIGRFAM: peptidase T-like protein; PFAM: peptidase dimerisation domain protein; peptidase M20; KEGG: sth:STH1689 peptidase YP_003397791.1 KEGG: cdf:CD0651 hypothetical protein YP_003397792.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: ere:EUBREC_1207 phosphoglycerate dehydrogenase, putative YP_003397793.1 KEGG: see:SNSL254_A4535 hypothetical protein YP_003397794.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: dsa:Desal_0550 LysR family transcriptional regulator YP_003397795.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: dda:Dd703_0843 glucarate dehydratase YP_003397796.1 PFAM: gluconate transporter; KEGG: msu:MS0688 GntT protein YP_003397797.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: oih:OB2844 hypothetical protein YP_003397798.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dps:DP2322 2-ketoglutarate oxidoreductase subunit delta YP_003397799.1 PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Transketolase domain protein; KEGG: nth:Nther_1482 2-oxoglutarate ferredoxin oxidoreductase, alpha subunit YP_003397800.1 PFAM: thiamine pyrophosphate protein domain protein TPP-binding; KEGG: tte:TTE1341 2-oxoglutarate ferredoxin oxidoreductase subunit beta YP_003397801.1 PFAM: Pyruvate/ketoisovalerate oxidoreductase; KEGG: mka:MK0730 2-oxoglutarate ferredoxin oxidoreductase subunit gamma YP_003397802.1 KEGG: hor:Hore_10820 dihydroxy-acid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_003397803.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cce:Ccel_1672 2-dehydro-3- deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase YP_003397804.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: ere:EUBREC_3075 4-hydroxybutyrate coenzyme A transferase YP_003397805.1 KEGG: pjd:Pjdr2_1789 hypothetical protein YP_003397806.1 KEGG: bsu:BSU02510 D-galactarate dehydratase; TIGRFAM: galactarate dehydratase; PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; SAF domain protein YP_003397807.1 PFAM: Na+/H+ antiporter NhaC-like; KEGG: fnu:FN0978 Na+/H+ antiporter NhaC YP_003397808.1 PFAM: ferric-uptake regulator; KEGG: cth:Cthe_0546 ferric uptake regulator family protein YP_003397809.1 PFAM: ABC-3 protein; KEGG: cbl:CLK_0805 manganese/zinc/iron chelate ABC transporter permease YP_003397810.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbf:CLI_1460 manganese/zinc/iron chelate ABC transporter ATP-binding protein YP_003397811.1 PFAM: periplasmic solute binding protein; KEGG: ckr:CKR_2696 hypothetical protein YP_003397813.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: cag:Cagg_2709 two component transcriptional regulator, winged helix family YP_003397814.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: chy:CHY_2566 sensor histidine kinase YP_003397815.1 KEGG: ccv:CCV52592_0992 hypothetical protein YP_003397816.1 PFAM: ThiJ/PfpI domain protein; KEGG: pen:PSEEN2360 hypothetical protein YP_003397817.1 PFAM: helix-turn-helix HxlR type; KEGG: cac:CAC1483 transcriptional regulator YP_003397818.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: bfs:BF2126 putative flavoredoxin YP_003397819.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bbe:BBR47_11810 transcriptional regulator YP_003397820.1 PFAM: aconitate hydratase domain protein; KEGG: hor:Hore_21050 aconitate hydratase YP_003397821.1 PFAM: Citrate transporter; KEGG: asu:Asuc_1303 citrate transporter YP_003397822.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: bcg:BCG9842_B2033 DNA-binding response regulator YP_003397823.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: cco:CCC13826_1970 hypothetical protein YP_003397824.1 KEGG: hypothetical protein YP_003397825.1 KEGG: axoneme-associated protein mst101(1) YP_003397826.1 PFAM: Radical SAM domain protein; KEGG: ele:Elen_1694 radical SAM domain protein YP_003397827.1 PFAM: AMMECR1 domain protein; Extradiol ring- cleavage dioxygenase class III protein subunit B; KEGG: shi:Shel_17380 hypothetical protein YP_003397828.1 TIGRFAM: phage SPO1 DNA polymerase-related protein; PFAM: Uracil-DNA glycosylase superfamily; KEGG: dge:Dgeo_1556 phage SPO1 DNA polymerase- related protein YP_003397829.1 PFAM: Heptaprenyl diphosphate synthase component I; KEGG: acl:ACL_0056 integral membrane protein YP_003397830.1 PFAM: protein of unknown function DUF1312; KEGG: tte:TTE2485 hypothetical protein YP_003397831.1 PFAM: ApbE family lipoprotein; KEGG: swo:Swol_1956 thiamine biosynthesis lipoprotein YP_003397832.1 PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: bvu:BVU_3890 ferredoxin YP_003397833.1 TIGRFAM: electron transport complex, RnfABCDGE type, A subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: tpd:Teth39_2120 electron transport complex, RnfABCDGE type, A subunit YP_003397834.1 TIGRFAM: electron transport complex, RnfABCDGE type, E subunit; PFAM: RnfA-Nqr electron transport subunit; KEGG: cpf:CPF_1319 electron transport complex RsxE subunit YP_003397835.1 TIGRFAM: electron transport complex, RnfABCDGE type, G subunit; PFAM: FMN-binding domain protein; KEGG: cbl:CLK_3558 electron transport complex, RnfABCDGE type, G subunit YP_003397836.1 TIGRFAM: electron transport complex, RnfABCDGE type, D subunit; PFAM: NQR2 and RnfD family protein; KEGG: ckr:CKR_1161 hypothetical protein YP_003397837.1 TIGRFAM: electron transport complex, RnfABCDGE type, C subunit; PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit; Soluble ligand binding domain; KEGG: tex:Teth514_0079 electron transport complex, RnfABCDGE type, C subunit YP_003397838.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dae:Dtox_3790 radical SAM domain protein YP_003397839.1 PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: cce:Ccel_2940 NLP/P60 protein YP_003397840.1 PFAM: sigma-54 factor interaction domain-containing protein; ATPase associated with various cellular activities AAA_5; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: cba:CLB_1645 aco operon transcriptional regulator YP_003397841.1 KEGG: bpu:BPUM_2637 tRNA (guanine-N(7)-)- methyltransferase; TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase; PFAM: putative methyltransferase YP_003397842.1 PFAM: cell cycle protein; KEGG: mta:Moth_0842 cell cycle protein YP_003397843.1 PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain; PASTA domain containing protein; KEGG: chy:CHY_2075 penicillin-binding protein 2B YP_003397844.1 PFAM: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain; KEGG: lsl:LSL_0533 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase YP_003397845.1 KEGG: cce:Ccel_0086 hypothetical protein YP_003397846.1 KEGG: gwc:GWCH70_1791 hypothetical protein YP_003397847.1 PFAM: protein of unknown function DUF190; KEGG: dsa:Desal_1826 protein of unknown function DUF190 YP_003397848.1 PFAM: LuxS protein; KEGG: bln:Blon_2000 S-ribosylhomocysteinase YP_003397849.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: lbu:LBUL_0873 signal transduction histidine kinase YP_003397850.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: cth:Cthe_1600 two component transcriptional regulator YP_003397851.1 PFAM: Peptidoglycan-binding lysin domain; SMART: Peptidoglycan-binding LysM; KEGG: bcv:Bcav_2432 peptidoglycan-binding LysM YP_003397852.1 KEGG: dma:DMR_40670 hypothetical protein YP_003397853.1 PFAM: carbon starvation protein CstA; KEGG: tde:TDE0012 carbon starvation protein CstA, putative YP_003397854.1 PFAM: FAD linked oxidase domain protein; KEGG: amt:Amet_3747 FAD linked oxidase domain- containing protein YP_003397856.1 PFAM: Silent information regulator protein Sir2; KEGG: lsl:LSL_0203 NAD-dependent deacetylase YP_003397857.1 KEGG: chy:CHY_2697 seryl-tRNA synthetase; TIGRFAM: seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like YP_003397858.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: rba:RB8469 lysine/ornithine decarboxylase YP_003397859.1 KEGG: cbl:CLK_2222 N-acetylglucosamine-6-phosphate deacetylase; TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase YP_003397860.1 TIGRFAM: glucokinase regulatory-like protein; PFAM: sugar isomerase (SIS); KEGG: cbe:Cbei_1917 N-acetylmuramic acid-6- phosphate etherase YP_003397861.1 PFAM: phosphotransferase system EIIC; Phosphotransferase system EIIB/cysteine, phosphorylation site; KEGG: cbb:CLD_3191 PTS system, IIBC components YP_003397862.1 PFAM: protein of unknown function DUF871; KEGG: cbe:Cbei_1919 hypothetical protein YP_003397863.1 TIGRFAM: GTP-binding protein YchF; PFAM: Protein of unknown function DUF933; GTP- binding protein HSR1-related; KEGG: dhd:Dhaf_4937 GTP-binding protein YchF YP_003397864.1 KEGG: ctc:CTC01046 histidinol-phosphatase; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein YP_003397865.1 KEGG: rha:RHA1_ro01297 nicotinic acid mononucleotide adenylyltransferase; TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_003397866.1 KEGG: cno:NT01CX_0074 hypothetical protein; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003397867.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: chy:CHY_2591 putative transcriptional regulator YP_003397868.1 TIGRFAM: iojap-like protein; PFAM: Iojap-related protein; KEGG: cce:Ccel_1366 iojap-like protein YP_003397869.1 KEGG: cno:NT01CX_0180 S1 RNA-binding domain- containing protein YP_003397870.1 PFAM: Integrase catalytic region; KEGG: afl:Aflv_2103 transposase YP_003397871.1 KEGG: bcy:Bcer98_3736 putative transposase YP_003397872.1 TIGRFAM: membrane protein AbrB duplication; PFAM: putative ammonia monooxygenase; KEGG: gka:GK1526 hypothetical protein YP_003397873.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cac:CAC3361 LysR family transcriptional regulator YP_003397874.1 PFAM: KWG Leptospira repeat protein; KEGG: ate:Athe_0718 KWG Leptospira repeat protein YP_003397875.1 TIGRFAM: 3-isopropylmalate dehydratase, large subunit; 3-isopropylmalate dehydratase; homoaconitate hydratase family protein; PFAM: aconitate hydratase domain protein; KEGG: ckl:CKL_2159 3-isopropylmalate dehydratase large subunit YP_003397876.1 TIGRFAM: 3-isopropylmalate dehydratase, small subunit; PFAM: aconitate hydratase domain protein; KEGG: pab:PAB0892 3-isopropylmalate dehydratase small subunit YP_003397877.1 KEGG: aae:aq_244 3-isopropylmalate dehydrogenase; TIGRFAM: 3-isopropylmalate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_003397878.1 PFAM: methyladenine glycosylase; KEGG: blj:BLD_0730 3-methyladenine DNA glycosylase YP_003397879.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; KEGG: dhd:Dhaf_3616 acetolactate synthase, small subunit YP_003397880.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; KEGG: dhd:Dhaf_3617 acetolactate synthase, large subunit, biosynthetic type YP_003397881.1 KEGG: ava:Ava_0133 ketol-acid reductoisomerase; TIGRFAM: ketol-acid reductoisomerase; PFAM: Acetohydroxy acid isomeroreductase catalytic domain protein; acetohydroxy acid isomeroreductase YP_003397882.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: chy:CHY_0092 DNA-binding response regulator YP_003397883.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: cbe:Cbei_2920 integral membrane sensor signal transduction histidine kinase YP_003397884.1 TIGRFAM: acetolactate synthase, large subunit, biosynthetic type; PFAM: thiamine pyrophosphate protein TPP binding domain protein; thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; KEGG: dhd:Dhaf_3617 acetolactate synthase, large subunit, biosynthetic type YP_003397885.1 TIGRFAM: acetolactate synthase, small subunit; PFAM: Acetolactate synthase, small subunit-like; amino acid-binding ACT domain protein; KEGG: hmo:HM1_1980 acetolactate synthase, small subunit YP_003397886.1 PFAM: protein of unknown function DUF815; KEGG: cac:CAC3262 ABC transporter ATPase YP_003397887.1 TIGRFAM: methylated-DNA/protein-cysteine methyltransferase; PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding; KEGG: cdf:CD0601 methylated-DNA--protein-cysteine methyltransferase 1 YP_003397888.1 PFAM: glycosyl transferase family 39; KEGG: geo:Geob_1553 glycosyl transferase family 39 YP_003397889.1 PFAM: Haemagluttinin domain protein; YadA domain protein; KEGG: msu:MS0748 hypothetical protein YP_003397890.1 PFAM: Methionine synthase vitamin-B12 independent; KEGG: msu:MS0941 MetE protein YP_003397891.1 TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: Protein of unknown function DUF2229, CoA enzyme activase; ATPase BadF/BadG/BcrA/BcrD type; KEGG: bth:BT_1407 activator of (R)-2- hydroxyglutaryl-CoA dehydratase YP_003397892.1 PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: amt:Amet_0163 polysaccharide biosynthesis protein YP_003397893.1 PFAM: Endoribonuclease L-PSP; KEGG: pde:Pden_3421 endoribonuclease L-PSP YP_003397894.1 PFAM: aminotransferase class V; KEGG: aoe:Clos_2343 aminotransferase class V YP_003397895.1 PFAM: aminotransferase class I and II; KEGG: fnu:FN0605 aspartate aminotransferase YP_003397896.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: aoe:Clos_2342 LysR family transcriptional regulator YP_003397897.1 PFAM: Peptidase M23; KEGG: tte:TTE0841 membrane proteins related to metalloendopeptidase YP_003397898.1 PFAM: transcriptional regulator PadR family protein; KEGG: lpj:JDM1_2932 regulator of phenolic acid metabolism PadR YP_003397899.1 PFAM: Alpha/beta hydrolase fold-3 domain protein; KEGG: dze:Dd1591_3247 alpha/beta hydrolase fold-3 domain protein YP_003397900.1 PFAM: Extradiol ring-cleavage dioxygenase class III protein subunit B; KEGG: mjl:Mjls_0759 extradiol ring-cleavage dioxygenase III subunit B YP_003397901.1 PFAM: Aldehyde Dehydrogenase; KEGG: sak:SAK_1211 aldehyde dehydrogenase family protein YP_003397902.1 PFAM: peptidase M29 aminopeptidase II; KEGG: cpr:CPR_1965 aminopeptidase YP_003397903.1 KEGG: cth:Cthe_2261 hypothetical protein YP_003397904.1 PFAM: V-type ATPase 116 kDa subunit; KEGG: tex:Teth514_2369 H(+)-transporting two-sector ATPase YP_003397905.1 PFAM: H+transporting two-sector ATPase C subunit; KEGG: tpd:Teth39_2263 V-type ATP synthase subunit K YP_003397906.1 PFAM: H+transporting two-sector ATPase E subunit; KEGG: cth:Cthe_2264 H+-transporting two-sector ATPase, E subunit YP_003397907.1 PFAM: H+transporting two-sector ATPase C (AC39) subunit; KEGG: cbl:CLK_2013 V-type ATP synthase subunit C YP_003397908.1 PFAM: Vacuolar H+transporting two-sector ATPase F subunit; KEGG: cdf:CD2956A V-type ATP synthase subunit F YP_003397909.1 PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: tpd:Teth39_2259 ATP synthase, A subunit YP_003397910.1 PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; KEGG: cth:Cthe_2268 V-type ATP synthase subunit B YP_003397911.1 TIGRFAM: V-type ATPase, D subunit; PFAM: H+transporting two-sector ATPase D subunit; KEGG: cpy:Cphy_3070 V-type ATP synthase subunit D YP_003397912.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: bha:BH0578 GntR family transcriptional regulator YP_003397914.1 PFAM: nitroreductase; KEGG: shi:Shel_04910 methylase involved in ubiquinone/menaquinone biosynthesis YP_003397915.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cbk:CLL_A3210 tRNA uridine 5- carboxymethylaminomethyl modification enzyme GidA YP_003397917.1 PFAM: peptidyl-prolyl cis-trans isomerase cyclophilin type; KEGG: mba:Mbar_A3616 peptidyl-prolyl cis-trans isomerase YP_003397918.1 PFAM: Excinuclease ABC C subunit domain protein; KEGG: ere:EUBREC_0245 putative O-methyltransferase YP_003397919.1 PFAM: Cold-shock protein DNA-binding; SMART: Cold shock protein; KEGG: pjd:Pjdr2_5748 cold-shock DNA-binding domain protein YP_003397920.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: tna:CTN_0365 oxidoreductase, short chain dehydrogenase/reductase family YP_003397921.1 TIGRFAM: branched-chain amino acid transport system II carrier protein; PFAM: branched-chain amino acid transport system II carrier protein; KEGG: efa:EF0243 branched-chain amino acid transport system II carrier protein YP_003397922.1 KEGG: azc:AZC_3961 outer membrane protein Omp31 precursor YP_003397923.1 PFAM: Polypeptide-transport-associated domain protein ShlB-type; surface antigen (D15); KEGG: gsu:GSU1153 OMP85 family outer membrane protein YP_003397924.1 TIGRFAM: adhesin HecA family; PFAM: Haemagluttinin repeat-containing protein; KEGG: dol:Dole_0612 hemolysin-type calcium-binding region YP_003397926.1 PFAM: fumarate lyase; KEGG: cbe:Cbei_3220 aspartate ammonia-lyase YP_003397927.1 PFAM: LrgA family protein; KEGG: ctc:CTC01825 putative murein hydrolase exporter YP_003397928.1 PFAM: LrgB family protein; KEGG: ele:Elen_2909 LrgB family protein YP_003397929.1 PFAM: peptidase dimerisation domain protein; peptidase M20; KEGG: cdf:CD2822 putative peptidase YP_003397930.1 PFAM: C4-dicarboxylate anaerobic carrier-like; KEGG: amt:Amet_0661 C4-dicarboxylate anaerobic carrier YP_003397931.1 PFAM: Bile acid:sodium symporter; KEGG: mmp:MMP0653 bile acid:sodium symporter YP_003397933.1 PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: cpf:CPF_0381 2-hydroxy-3-oxopropionate reductase YP_003397934.1 PFAM: extracellular solute-binding protein family 1; KEGG: sth:STH1146 ABC transporter substrate-binding protein YP_003397935.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sth:STH1147 ABC transporter permease protein YP_003397936.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tga:TGAM_1014 ABC-type transport system, ATPase component, putative Fe3+ transporter (FbpC/AfuC) YP_003397937.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: apv:Apar_0245 endoribonuclease L-PSP YP_003397938.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: reu:Reut_B5545 regulatory protein, IclR YP_003397939.1 PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: ppg:PputGB1_3103 agmatinase YP_003397940.1 KEGG: cpy:Cphy_2765 hypothetical protein YP_003397941.1 PFAM: branched-chain amino acid transport; KEGG: dps:DP2464 hypothetical protein YP_003397942.1 PFAM: AzlC family protein; KEGG: sfu:Sfum_0194 AzlC family protein YP_003397943.1 PFAM: conserved hypothetical protein; KEGG: kol:Kole_1784 hypothetical protein YP_003397944.1 KEGG: hmo:HM1_2036 phosphoserine aminotransferase; TIGRFAM: phosphoserine aminotransferase; PFAM: aminotransferase class V YP_003397945.1 TIGRFAM: sodium/glutamate symporter; PFAM: sodium/glutamate symporter; KEGG: fnu:FN1801 sodium/glutamate symport carrier protein YP_003397946.1 PFAM: LemA family protein; KEGG: dhd:Dhaf_0874 LemA family protein YP_003397947.1 PFAM: protein of unknown function DUF477; KEGG: dhd:Dhaf_0875 protein of unknown function DUF477 YP_003397948.1 PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; KEGG: bvu:BVU_0349 thiamine biosynthesis protein ThiH YP_003397950.1 TIGRFAM: GTP-binding protein Obg/CgtA; small GTP- binding protein; Obg family GTPase CgtA; PFAM: GTP1/OBG sub domain protein; GTP-binding protein HSR1-related; GTP1/OBG domain protein; KEGG: chy:CHY_0370 GTPase ObgE YP_003397951.1 KEGG: pth:PTH_0834 gamma-glutamyl kinase; TIGRFAM: glutamate 5-kinase; PFAM: aspartate/glutamate/uridylate kinase; PUA domain containing protein; SMART: PUA domain containing protein YP_003397952.1 TIGRFAM: gamma-glutamyl phosphate reductase; PFAM: Aldehyde Dehydrogenase; KEGG: mta:Moth_0563 gamma-glutamyl phosphate reductase YP_003397953.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: ppd:Ppro_3233 RND family efflux transporter MFP subunit YP_003397954.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_1763 ABC transporter related protein YP_003397955.1 PFAM: protein of unknown function DUF214; KEGG: sat:SYN_01995 export ABC transporter permease protein YP_003397957.1 PFAM: protein of unknown function DUF886; KEGG: tde:TDE2575 hypothetical protein YP_003397958.1 KEGG: ctc:CTC02305 glutamate formiminotransferase; TIGRFAM: glutamate formiminotransferase; PFAM: Formiminotransferase domain protein; Formiminotransferase domain protein YP_003397959.1 PFAM: formate-tetrahydrofolate ligase FTHFS; KEGG: ctc:CTC02304 formate--tetrahydrofolate ligase YP_003397960.1 PFAM: Formiminotransferase-cyclodeaminase; KEGG: ctc:CTC02303 formiminotetrahydrofolate cyclodeaminase YP_003397961.1 PFAM: transposase IS4 family protein; KEGG: dsy:DSY1297 hypothetical protein YP_003397962.1 KEGG: sfu:Sfum_2378 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase YP_003397963.1 PFAM: Na+/H+ antiporter NhaC-like; KEGG: ctc:CTC02311 transport protein (putative Na+/H+ antiporter, hisidine permease) YP_003397964.1 KEGG: ctc:CTC02318 histidine ammonia-lyase; TIGRFAM: histidine ammonia-lyase; PFAM: phenylalanine/histidine ammonia-lyase YP_003397965.1 PFAM: FAD linked oxidase domain protein; KEGG: fnu:FN1536 (S)-2-hydroxy-acid oxidase chain D YP_003397966.1 KEGG: bbe:BBR47_47820 hypothetical protein YP_003397967.1 TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dma:DMR_04350 efflux system protein YP_003397968.1 TIGRFAM: transporter, hydrophobe/amphiphile efflux- 1 (HAE1) family; PFAM: acriflavin resistance protein; KEGG: dsa:Desal_3289 transporter, hydrophobe/amphiphile efflux-1 (HAE1) family YP_003397969.1 PFAM: ABC transporter domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: pna:Pnap_0638 ABC transporter YP_003397970.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: hmo:HM1_1545 sodium:alanine symporter YP_003397971.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: cpy:Cphy_0262 beta-lactamase domain- containing protein YP_003397972.1 TIGRFAM: RNA methyltransferase, TrmH family, group 3; PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: drm:Dred_0196 RNA methyltransferase YP_003397973.1 TIGRFAM: RNA polymerase sigma-H factor; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: chy:CHY_2333 RNA polymerase factor sigma-70 YP_003397974.1 KEGG: ace:Acel_0811 hypothetical protein YP_003397975.1 KEGG: pth:PTH_1386 6-phosphofructokinase; TIGRFAM: phosphofructokinase; PFAM: phosphofructokinase YP_003397976.1 KEGG: hmo:HM1_1680 undecaprenol diphosphatase, putative; TIGRFAM: undecaprenol kinase; PFAM: Bacitracin resistance protein BacA YP_003397977.1 TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain protein; KEGG: aac:Aaci_2713 translation elongation factor Tu YP_003397978.1 TIGRFAM: ribosomal protein L33; PFAM: ribosomal protein L33; KEGG: tpd:Teth39_0359 50S ribosomal protein L33 YP_003397979.1 TIGRFAM: preprotein translocase, SecE subunit; PFAM: protein secE/sec61-gamma protein; KEGG: bfa:Bfae_24000 preprotein translocase, SecE subunit YP_003397980.1 KEGG: pth:PTH_0305 transcription antiterminator; TIGRFAM: transcription termination/antitermination factor NusG; PFAM: NGN domain protein; SMART: NGN domain protein YP_003397981.1 KEGG: gwc:GWCH70_0098 ribosomal protein L11; TIGRFAM: ribosomal protein L11; PFAM: Ribosomal protein L11-like; SMART: ribosomal protein L11 YP_003397982.1 TIGRFAM: ribosomal protein L1; PFAM: ribosomal protein L1; KEGG: bcg:BCG9842_B5208 50S ribosomal protein L1 YP_003397983.1 PFAM: ribosomal protein L10; KEGG: mta:Moth_2470 50S ribosomal protein L10 YP_003397984.1 TIGRFAM: ribosomal protein L7/L12; PFAM: Ribosomal protein L7/L12; KEGG: bha:BH0122 50S ribosomal protein L7/L12 YP_003397985.1 PFAM: ABC transporter related; NIL domain; SMART: AAA ATPase; KEGG: yen:YE4181 ABC transporter YP_003397986.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: yen:YE4182 ABC transporter permease YP_003397987.1 PFAM: NLPA lipoprotein; KEGG: bld:BLi03178 hypothetical protein YP_003397988.1 KEGG: cdf:CD1086 putative peptidase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003397989.1 PFAM: protein of unknown function DUF441; KEGG: lba:Lebu_0431 protein of unknown function DUF441 YP_003397990.1 TIGRFAM: flavodoxin; PFAM: flavodoxin/nitric oxide synthase; KEGG: eel:EUBELI_00571 hypothetical protein YP_003397991.1 KEGG: eel:EUBELI_00570 hypothetical protein YP_003397992.1 TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: dat:HRM2_48490 outer membrane protein YP_003397993.1 PFAM: secretion protein HlyD family protein; KEGG: bbr:BB2383 HlyD family secretion protein YP_003397994.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pag:PLES_25911 ATP-binding protein YP_003397995.1 PFAM: ABC-2 type transporter; KEGG: nmu:Nmul_A1420 hypothetical protein YP_003397996.1 PFAM: ABC-2 type transporter; KEGG: vap:Vapar_1738 ABC-2 type transporter YP_003397997.1 PFAM: peptidase dimerisation domain protein; peptidase M20; KEGG: sth:STH1479 putative peptidase YP_003397998.1 KEGG: sto:ST1078 hypothetical protein YP_003397999.1 PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: shi:Shel_22480 hypothetical protein YP_003398000.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bfs:BF0621 putative ErfK/YbiS/YcfS/YnhG family protein YP_003398001.1 PFAM: GCN5-related N-acetyltransferase; KEGG: aac:Aaci_2326 GCN5-related N- acetyltransferase YP_003398002.1 PFAM: Chorismate binding-like; Anthranilate synthase component I domain protein; KEGG: cce:Ccel_3213 anthranilate synthase component I YP_003398003.1 TIGRFAM: glutamine amidotransferase of anthranilate synthase; PFAM: glutamine amidotransferase class-I; KEGG: ere:EUBREC_2979 anthranilate/para- aminobenzoate synthase component II, TrpG YP_003398004.1 KEGG: ere:EUBREC_2978 anthranilate phosphoribosyltransferase, TrpD; TIGRFAM: anthranilate phosphoribosyltransferase; PFAM: glycosyl transferase family 3; glycosyl transferase, family 3-like YP_003398005.1 PFAM: Indole-3-glycerol phosphate synthase; KEGG: cce:Ccel_3216 indole-3-glycerol phosphate synthase YP_003398006.1 PFAM: N-(5'phosphoribosyl)anthranilate isomerase (PRAI); KEGG: cce:Ccel_3217 N- (5'phosphoribosyl)anthranilate isomerase (PRAI) YP_003398007.1 TIGRFAM: tryptophan synthase, beta subunit; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cth:Cthe_1412 tryptophan synthase subunit beta YP_003398008.1 KEGG: cth:Cthe_1411 tryptophan synthase, alpha chain; TIGRFAM: tryptophan synthase, alpha subunit; PFAM: tryptophan synthase alpha chain YP_003398009.1 TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: sth:STH1883 LytR family transcriptional regulator YP_003398011.1 PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: mta:Moth_1558 shikimate dehydrogenase YP_003398012.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: bha:BH2672 C4-dicarboxylate transport system (permease small protein) YP_003398013.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: ere:EUBREC_2838 hypothetical protein YP_003398014.1 PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: ere:EUBREC_2837 hypothetical protein YP_003398015.1 KEGG: kpn:KPN_00073 3-dehydroquinate dehydratase; TIGRFAM: 3-dehydroquinate dehydratase, type I; PFAM: dehydroquinase class I YP_003398016.1 PFAM: C4-dicarboxylate anaerobic carrier-like; KEGG: sub:SUB1326 C4-dicarboxylate anaerobic carrier protein YP_003398017.1 KEGG: ere:EUBREC_0889 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003398018.1 KEGG: eel:EUBELI_20105 hypothetical protein YP_003398019.1 PFAM: glycosyl transferase family 39; KEGG: ote:Oter_1409 glycosyl transferase family protein YP_003398021.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: gme:Gmet_1684 LysR family transcriptional regulator YP_003398022.1 PFAM: BioY protein; KEGG: dae:Dtox_4332 BioY protein YP_003398023.1 KEGG: saf:SULAZ_0549 porphobilinogen deaminase; TIGRFAM: porphobilinogen deaminase; PFAM: Porphobilinogen deaminase YP_003398024.1 TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: mta:Moth_1248 uroporphyrinogen-III C- methyltransferase / uroporphyrinogen-III synthase YP_003398025.1 TIGRFAM: siroheme synthase; KEGG: ttu:TERTU_1974 siroheme synthase YP_003398026.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: ctc:CTC00826 rubredoxin/rubrerythrin domain- containing protein YP_003398027.1 PFAM: protein of unknown function DUF1121; KEGG: eel:EUBELI_01180 hypothetical protein YP_003398028.1 KEGG: smu:SMU.1010 putative citrate lyase ligase; TIGRFAM: citrate lyase ligase; cytidyltransferase- related domain protein; PFAM: Citrate lyase ligase domain protein; SMART: Citrate lyase ligase domain protein YP_003398029.1 KEGG: chy:CHY_0138 S-adenosylmethionine synthetase; TIGRFAM: S-adenosylmethionine synthetase; PFAM: S-adenosylmethionine synthetase YP_003398030.1 KEGG: bsu:BSU15710 primosome assembly protein PriA; TIGRFAM: primosomal protein N'; PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003398031.1 KEGG: dhd:Dhaf_3853 peptide deformylase; TIGRFAM: peptide deformylase; PFAM: formylmethionine deformylase YP_003398032.1 KEGG: cno:NT01CX_2244 methionyl-tRNA formyltransferase; TIGRFAM: methionyl-tRNA formyltransferase; PFAM: formyl transferase domain protein YP_003398033.1 PFAM: protein of unknown function DUF116; KEGG: gbm:Gbem_0636 protein of unknown function DUF116 YP_003398034.1 TIGRFAM: sun protein; PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: drm:Dred_1707 sun protein YP_003398035.1 TIGRFAM: radical SAM enzyme, Cfr family; PFAM: Radical SAM domain protein; KEGG: afl:Aflv_1788 predicted Fe-S-cluster redox enzyme YP_003398036.1 KEGG: ele:Elen_3041 protein serine/threonine phosphatase; PFAM: Protein phosphatase 2C-like; SMART: protein phosphatase 2C domain protein YP_003398037.1 PFAM: Serine/threonine-protein kinase-like domain; PASTA domain containing protein; SMART: serine/threonine protein kinase; Tyrosine- protein kinase, subgroup, catalytic domain; PASTA domain containing protein; KEGG: ate:Athe_1045 serine/threonine protein kinase with PASTA sensor(s) YP_003398038.1 TIGRFAM: ribosome small subunit-dependent GTPase A; PFAM: GTPase EngC; KEGG: pjd:Pjdr2_3749 ribosome small subunit- dependent GTPase A YP_003398039.1 KEGG: sat:SYN_01763 ribulose-phosphate 3-epimerase; TIGRFAM: ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase YP_003398041.1 PFAM: periplasmic binding protein; KEGG: cce:Ccel_3204 periplasmic binding protein YP_003398042.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nph:NP3818A corrinoid ABC transporter ATPase YP_003398043.1 PFAM: MotA/TolQ/ExbB proton channel; KEGG: ote:Oter_2347 MotA/TolQ/ExbB proton channel YP_003398044.1 PFAM: Biopolymer transport protein ExbD/TolR; KEGG: mno:Mnod_1396 protein TolR YP_003398045.1 TIGRFAM: TonB family protein; KEGG: pca:Pcar_0453 TonB-like protein YP_003398046.1 KEGG: bay:RBAM_036150 hypothetical protein YP_003398047.1 PFAM: peptidase M48 Ste24p; KEGG: bpe:BP1463 putative lipoprotein YP_003398048.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: blj:BLD_1095 arsenite efflux pump YP_003398049.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: blj:BLD_1091 arsenical resistance operon repressor YP_003398050.1 PFAM: metallophosphoesterase; KEGG: mta:Moth_1160 metallophosphoesterase YP_003398051.1 PFAM: helix-turn-helix HxlR type; KEGG: cbt:CLH_2468 transcriptional regulator, HxlR family YP_003398052.1 PFAM: protein of unknown function DUF1486; KEGG: ccv:CCV52592_0353 putative pyruvate kinase YP_003398053.1 KEGG: mmp:MMP0917 diaminopimelate epimerase; TIGRFAM: diaminopimelate epimerase; PFAM: diaminopimelate epimerase YP_003398054.1 TIGRFAM: LL-diaminopimelate aminotransferase; PFAM: aminotransferase class I and II; KEGG: tel:tll2102 L,L-diaminopimelate aminotransferase YP_003398056.1 PFAM: extracellular solute-binding protein family 1; KEGG: hmo:HM1_2279 spermidine/putrescine abc transporter, spermidine/putrescine-binding protein YP_003398057.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hmo:HM1_2278 spermidine/putrescine abc transporter, permease protein YP_003398058.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: hmo:HM1_2277 spermidine/putrescine abc transporter, permease protein YP_003398059.1 KEGG: hmo:HM1_2276 spermidine/putrescine abc transporter, ATP-binding protein PotA; TIGRFAM: spermidine/putrescine ABC transporter ATPase subunit; PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase YP_003398060.1 TIGRFAM: ribosomal protein L21; PFAM: ribosomal protein L21; KEGG: sth:STH429 50S ribosomal protein L21 YP_003398061.1 PFAM: protein of unknown function DUF464; KEGG: cpy:Cphy_2550 hypothetical protein YP_003398062.1 TIGRFAM: ribosomal protein L27; PFAM: ribosomal protein L27; KEGG: ter:Tery_3242 50S ribosomal protein L27 YP_003398064.1 KEGG: sth:STH3085 DNA-directed RNA polymerase subunit beta; TIGRFAM: DNA-directed RNA polymerase, beta subunit; PFAM: RNA polymerase Rpb2 domain 6; RNA polymerase beta subunit; RNA polymerase Rpb2 domain 2; RNA polymerase Rpb2 domain 3; DNA-directed RNA polymerase, beta subunit, external 1 domain; RNA polymerase Rpb2 domain 7 YP_003398065.1 KEGG: mta:Moth_2467 DNA-directed RNA polymerase subunit beta'; TIGRFAM: DNA-directed RNA polymerase, beta' subunit; PFAM: RNA polymerase Rpb1 domain 1; RNA polymerase alpha subunit; RNA polymerase Rpb1 domain 3; RNA polymerase Rpb1 domain 4; RNA polymerase Rpb1 domain 5; SMART: RNA polymerase I subunit A domain protein YP_003398066.1 PFAM: NERD domain protein YP_003398067.1 PFAM: AbgT putative transporter; KEGG: oih:OB3284 aminobenzoyl-glutamate transporter YP_003398068.1 PFAM: AbgT putative transporter; KEGG: bcl:ABC3179 aminobenzoyl-glutamate transporter YP_003398069.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aoe:Clos_0523 ABC transporter related YP_003398070.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: nth:Nther_0226 ABC transporter related YP_003398071.1 PFAM: cobalt transport protein; KEGG: ctc:CTC02574 cobalt transport protein CbiQ YP_003398072.1 KEGG: sat:SYN_01395 tRNA pseudouridine synthase A; TIGRFAM: tRNA pseudouridine synthase A; PFAM: Pseudouridine synthase I, TruA, alpha/beta domain YP_003398073.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cpc:Cpar_1184 TonB-dependent receptor YP_003398074.1 KEGG: dau:Daud_0623 riboflavin biosynthesis protein RibD; TIGRFAM: riboflavin biosynthesis protein RibD; PFAM: bifunctional deaminase-reductase domain protein; CMP/dCMP deaminase zinc-binding YP_003398075.1 KEGG: dae:Dtox_2299 riboflavin synthase, alpha subunit; TIGRFAM: riboflavin synthase, alpha subunit; PFAM: Lumazine-binding protein YP_003398076.1 TIGRFAM: 3,4-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase; GTP cyclohydrolase II; KEGG: chy:CHY_1473 3,4-dihydroxy-2-butanone 4- phosphate synthase/GTP cyclohydrolase II YP_003398077.1 KEGG: ere:EUBREC_3129 riboflavin synthase beta chain (6,7-dimethyl-8-ribityllumazine synthase); TIGRFAM: 6,7-dimethyl-8-ribityllumazine synthase; PFAM: 67-dimethyl-8-ribityllumazine synthase YP_003398078.1 PFAM: Hsp33 protein; KEGG: pjd:Pjdr2_0072 HSP33 protein YP_003398079.1 KEGG: dhd:Dhaf_3106 RecA protein; TIGRFAM: recA protein; PFAM: RecA domain protein; SMART: AAA ATPase YP_003398080.1 PFAM: regulatory protein RecX; KEGG: rha:RHA1_ro06766 recombination regulator RecX YP_003398081.1 KEGG: bbe:BBR47_33940 2',3'-cyclic-nucleotide 2'- phosphodiesterase; TIGRFAM: YmdA/YtgF protein; metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; K Homology, type 1, subgroup; SMART: metal-dependent phosphohydrolase HD region; KH domain protein YP_003398082.1 PFAM: protein of unknown function DUF1393; KEGG: cbt:CLH_1589 hypothetical protein YP_003398083.1 TIGRFAM: metal dependent phophohydrolase; KEGG: cbi:CLJ_B0707 HDIG domain protein YP_003398084.1 PFAM: purine or other phosphorylase family 1; KEGG: eca:ECA0185 uridine phosphorylase YP_003398085.1 KEGG: sgl:SG0396 phosphopentomutase; TIGRFAM: phosphopentomutase; PFAM: Phosphopentomutase domain protein; metalloenzyme domain protein YP_003398087.1 PFAM: zinc/iron permease; KEGG: apv:Apar_0715 zinc/iron permease YP_003398088.1 TIGRFAM: hybrid cluster protein; PFAM: Prismane; KEGG: cbe:Cbei_0786 hydroxylamine reductase YP_003398090.1 PFAM: protein of unknown function DUF488; KEGG: noc:Noc_2090 hypothetical protein YP_003398091.1 KEGG: hne:HNE_0757 putative lipoprotein YP_003398092.1 PFAM: sodium:dicarboxylate symporter; KEGG: cbf:CLI_2029 sodium:dicarboxylate symporter family protein YP_003398093.1 KEGG: eca:ECA2246 hypothetical protein YP_003398094.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cbe:Cbei_3865 LysR family transcriptional regulator YP_003398095.1 PFAM: BioY protein; KEGG: cdf:CD2971 putative biotin synthase YP_003398096.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: cdf:CD2970 putative thiolase YP_003398097.1 PFAM: AMP-dependent synthetase and ligase; KEGG: cdf:CD2969 putative AMP-binding protein YP_003398098.1 KEGG: mac:MA2541 hypothetical protein YP_003398099.1 KEGG: app:CAP2UW1_1314 hypothetical protein YP_003398100.1 PFAM: protein of unknown function UPF0066; KEGG: amu:Amuc_0110 protein of unknown function UPF0066 YP_003398101.1 PFAM: Haemagluttinin domain protein; Hep_Hag repeat- containing protein; YadA domain protein; S-layer domain protein; KEGG: pmu:PM0714 Hsf YP_003398103.1 PFAM: lipase class 3; KEGG: DAD1; DAD1 (DEFECTIVE ANTHER DEHISCENCE 1); triacylglycerol lipase YP_003398104.1 PFAM: amidohydrolase 2; KEGG: bbe:BBR47_14510 hypothetical protein YP_003398105.1 PFAM: conserved hypothetical protein; KEGG: avi:Avi_5192 hypothetical protein YP_003398106.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: efe:EFER_2240 colicin I receptor YP_003398107.1 KEGG: vvy:VVA0425 coproporphyrinogen III oxidase YP_003398108.1 PFAM: permease; KEGG: blj:BLD_1092 hypothetical permease YP_003398109.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: eel:EUBELI_20106 ArsR family transcriptional regulator YP_003398110.1 TIGRFAM: redox-active disulfide protein 2; KEGG: rsq:Rsph17025_1409 hypothetical protein YP_003398111.1 PFAM: Helix-turn-helix type 11 domain protein; 3H domain protein; KEGG: ere:EUBREC_1036 hypothetical protein YP_003398112.1 PFAM: protein of unknown function DUF805; KEGG: mag:amb4251 hypothetical protein YP_003398113.1 PFAM: ATPase associated with various cellular activities AAA_5; KEGG: ere:EUBREC_2278 putative nitric-oxide reductase YP_003398114.1 SMART: von Willebrand factor A; KEGG: ere:EUBREC_2277 hypothetical protein YP_003398115.1 TIGRFAM: valyl-tRNA synthetase; KEGG: drm:Dred_2554 valyl-tRNA synthetase YP_003398116.1 TIGRFAM: FolC bifunctional protein; PFAM: cytoplasmic peptidoglycan synthetase domain protein; Mur ligase middle domain protein; KEGG: drm:Dred_2552 FolC bifunctional protein YP_003398117.1 PFAM: O-antigen polymerase; KEGG: dae:Dtox_4116 O-antigen polymerase YP_003398118.1 TIGRFAM: glucose-1-phosphate adenylyltransferase; PFAM: Nucleotidyl transferase; KEGG: cpe:CPE0068 glucose-1-phosphate adenylyltransferase YP_003398119.1 KEGG: drm:Dred_1456 glucose-1-phosphate adenylyltransferase, GlgD subunit; TIGRFAM: glucose-1-phosphate adenylyltransferase, GlgD subunit; PFAM: Nucleotidyl transferase YP_003398120.1 KEGG: gtn:GTNG_2778 glycogen phosphorylase; TIGRFAM: glycogen/starch/alpha-glucan phosphorylase; PFAM: glycosyl transferase family 35 YP_003398121.1 KEGG: hor:Hore_06930 1,4-alpha-glucan branching enzyme; TIGRFAM: 1,4-alpha-glucan branching enzyme; PFAM: alpha amylase all-beta; glycoside hydrolase family 13 domain protein; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003398122.1 TIGRFAM: glycogen/starch synthase, ADP-glucose type; PFAM: Starch synthase catalytic domain protein; glycosyl transferase group 1; KEGG: gtn:GTNG_2779 glycogen synthase YP_003398123.1 KEGG: nth:Nther_0557 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase; PFAM: glycoside hydrolase family 77; alpha amylase catalytic region; SMART: alpha amylase catalytic sub domain YP_003398124.1 PFAM: Citrate transporter; KEGG: asu:Asuc_1303 citrate transporter YP_003398125.1 PFAM: Citrate transporter; KEGG: asu:Asuc_1303 citrate transporter YP_003398126.1 KEGG: sub:SUB1586 citrate lyase alpha subunit; TIGRFAM: citrate lyase, alpha subunit; PFAM: Citrate lyase alpha subunit YP_003398127.1 PFAM: HpcH/HpaI aldolase; KEGG: fnu:FN1379 citrate lyase beta chain YP_003398128.1 TIGRFAM: citrate lyase acyl carrier protein; PFAM: Citrate lyase acyl carrier protein CitD; KEGG: ooe:OEOE_0421 citrate lyase subunit gamma YP_003398129.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cac:CAC3361 LysR family transcriptional regulator YP_003398130.1 KEGG: asu:Asuc_1198 holo-ACP synthase, triphosphoribosyl-dephospho-CoA synthase; TIGRFAM: holo-ACP synthase CitX; PFAM: triphosphoribosyl-dephospho-CoA protein; Apo- citrate lyase phosphoribosyl-dephospho-CoA transferase YP_003398131.1 PFAM: Uncharacterised protein family UPF0324; KEGG: drm:Dred_1452 hypothetical protein YP_003398132.1 KEGG: tye:THEYE_A0243 hypothetical protein YP_003398133.1 KEGG: tde:TDE1506 L-serine dehydratase, iron-sulfur- dependent, alpha subunit; TIGRFAM: L-serine dehydratase, iron-sulfur- dependent, alpha subunit; PFAM: serine dehydratase alpha chain YP_003398134.1 KEGG: tde:TDE1507 L-serine dehydratase, iron-sulfur- dependent, beta subunit; TIGRFAM: L-serine dehydratase, iron-sulfur- dependent, beta subunit; PFAM: serine dehydratase beta chain YP_003398135.1 PFAM: sodium:dicarboxylate symporter; KEGG: bhy:BHWA1_00557 sodium:dicarboxylate symporter YP_003398136.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cpy:Cphy_2156 LysR family transcriptional regulator YP_003398137.1 TIGRFAM: ribosomal protein L31; PFAM: ribosomal protein L31; KEGG: cha:CHAB381_0223 50S ribosomal protein L31 YP_003398138.1 PFAM: protein of unknown function DUF1385; KEGG: hor:Hore_17980 predicted metal-dependent enzyme YP_003398139.1 TIGRFAM: peptide chain release factor 1; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: chy:CHY_2563 peptide chain release factor 1 YP_003398140.1 KEGG: mxa:MXAN_4908 putative protein methyltransferase HemK; TIGRFAM: protein-(glutamine-N5) methyltransferase, release factor-specific; modification methylase, HemK family; PFAM: methyltransferase small YP_003398141.1 TIGRFAM: Sua5/YciO/YrdC/YwlC family protein; PFAM: SUA5/yciO/yrdC domain; SUA5 domain protein; KEGG: bcg:BCG9842_B5504 SUA5/YciO/YrdC/YwlC family protein YP_003398142.1 KEGG: cdf:CD2320 ribose-5-phosphate isomerase 1; TIGRFAM: ribose 5-phosphate isomerase B; sugar- phosphate isomerase, RpiB/LacA/LacB family; PFAM: Ribose/galactose isomerase YP_003398143.1 PFAM: conserved hypothetical protein; KEGG: cpy:Cphy_3000 hypothetical protein YP_003398144.1 PFAM: glycine hydroxymethyltransferase; KEGG: chy:CHY_2557 serine hydroxymethyltransferase YP_003398145.1 KEGG: hor:Hore_17920 uracil phosphoribosyltransferase; TIGRFAM: uracil phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003398146.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: chy:CHY_2556 putative ComE operon protein 2 YP_003398147.1 KEGG: ere:EUBREC_1080 flagellin lysine-N-methylase YP_003398149.1 PFAM: Chorismate mutase, type II; KEGG: cli:Clim_2513 chorismate mutase YP_003398150.1 PFAM: sodium/sulphate symporter; KEGG: lcb:LCABL_04300 sodium-dependent dicarboxylate transporter SdcS (Na(+)/dicarboxylate symporter) YP_003398151.1 KEGG: sca:Sca_2326 hypothetical protein YP_003398153.1 PFAM: UspA domain protein; KEGG: bsu:BSU39250 phosphate starvation protein (universal stress protein A family) YP_003398154.1 PFAM: UspA domain protein; KEGG: cma:Cmaq_1851 UspA domain-containing protein YP_003398155.1 PFAM: UspA domain protein; KEGG: bsu:BSU39250 phosphate starvation protein (universal stress protein A family) YP_003398156.1 PFAM: UspA domain protein; KEGG: cma:Cmaq_1851 UspA domain-containing protein YP_003398157.1 PFAM: UspA domain protein; KEGG: mse:Msed_1589 UspA domain-containing protein YP_003398158.1 PFAM: Na+/H+ antiporter NhaC-like; KEGG: drm:Dred_1645 Na+/H+ antiporter NhaC YP_003398159.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: Amino acid carrier protein alsT, putative YP_003398160.1 PFAM: aminotransferase class I and II; KEGG: mmx:MmarC6_0851 GntR family transcriptional regulator YP_003398161.1 KEGG: gwc:GWCH70_2673 DNA polymerase I; TIGRFAM: DNA polymerase I; PFAM: DNA-directed DNA polymerase; 5'-3' exonuclease, N-terminal resolvase-like domain; 5'-3' exonuclease, SAM-fold domain; SMART: 5'-3' exonuclease; Helix-hairpin-helix domain protein class 2; DNA-directed DNA polymerase YP_003398162.1 KEGG: chy:CHY_1649 formamidopyrimidine-DNA glycosylase; TIGRFAM: formamidopyrimidine-DNA glycosylase; PFAM: Formamidopyrimidine-DNA glycosylase catalytic domain protein; DNA glycosylase/AP lyase, H2TH DNA- binding; zinc finger Fpg domain protein YP_003398163.1 TIGRFAM: dephospho-CoA kinase; KEGG: sth:STH851 dephospho-CoA kinase YP_003398164.1 PFAM: Lytic transglycosylase catalytic; KEGG: hmo:HM1_1753 soluble lytic murein transglycosylase YP_003398165.1 KEGG: ere:EUBREC_1720 hypothetical protein YP_003398166.1 PFAM: gluconate transporter; KEGG: cpy:Cphy_2104 gluconate transporter YP_003398167.1 TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: ckr:CKR_0744 hypothetical protein YP_003398168.1 TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein; KEGG: cac:CAC3289 iron-regulated ABC-type transporter membrane component (SufB) YP_003398169.1 PFAM: SufBD protein; KEGG: cbe:Cbei_1850 FeS assembly protein SufD YP_003398170.1 TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; KEGG: ckr:CKR_0747 hypothetical protein YP_003398171.1 TIGRFAM: SUF system FeS assembly protein, NifU family; PFAM: nitrogen-fixing NifU domain protein; KEGG: cac:CAC3292 NifU homolog involved in Fe-S cluster formation YP_003398172.1 KEGG: hmo:HM1_2322 polyribonucleotide nucleotidyltransferase; TIGRFAM: polyribonucleotide nucleotidyltransferase; PFAM: 3' exoribonuclease; Exoribonuclease, phosphorolytic domain 2; Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type; K Homology, type 1, subgroup; RNA binding S1 domain protein; SMART: KH domain protein YP_003398173.1 TIGRFAM: PTS system, glucose subfamily, IIA subunit; PFAM: sugar-specific permease EIIA 1 domain; KEGG: bbe:BBR47_00410 PTS system IIA component YP_003398175.1 TIGRFAM: ribosomal protein L28; PFAM: ribosomal protein L28; KEGG: aoe:Clos_1438 ribosomal protein L28 YP_003398176.1 KEGG: sth:STH1384 ATP-dependent DNA helicase RecG; TIGRFAM: ATP-dependent DNA helicase RecG; PFAM: DEAD/DEAH box helicase domain protein; nucleic acid binding OB-fold tRNA/helicase-type; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003398177.1 TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain protein; KEGG: mta:Moth_1142 elongation factor G YP_003398178.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ypb:YPTS_1473 hypothetical protein YP_003398179.1 KEGG: pmx:PERMA_1704 transketolase; TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase central region YP_003398180.1 TIGRFAM: phosphomethylpyrimidine kinase; PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: esi:Exig_0540 phosphomethylpyrimidine kinase YP_003398181.1 KEGG: cac:CAC0495 thiamine monophosphate syntase; TIGRFAM: thiamine-phosphate pyrophosphorylase; PFAM: thiamine monophosphate synthase YP_003398183.1 PFAM: putative helix-turn-helix protein YlxM/p13 family protein; KEGG: ljo:LJ1517 hypothetical protein YP_003398184.1 KEGG: gwc:GWCH70_1087 signal recognition particle protein; TIGRFAM: signal recognition particle protein; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; Signal peptide binding (SRP54) M- domain protein; SMART: AAA ATPase YP_003398185.1 TIGRFAM: ribosomal protein S16; PFAM: ribosomal protein S16; KEGG: lsp:Bsph_1527 30S ribosomal protein S16 YP_003398186.1 KEGG: ckr:CKR_1299 hypothetical protein YP_003398187.1 KEGG: sth:STH1468 hypothetical protein YP_003398188.1 TIGRFAM: 16S rRNA processing protein RimM; PFAM: RimM protein; PRC-barrel domain protein; KEGG: bcb:BCB4264_A3941 16S rRNA-processing protein RimM YP_003398189.1 KEGG: afw:Anae109_1944 tRNA (guanine-N1)- methyltransferase; TIGRFAM: tRNA (guanine-N1)-methyltransferase; PFAM: tRNA (guanine-N1-)-methyltransferase YP_003398190.1 TIGRFAM: ribosomal protein L19; PFAM: ribosomal protein L19; KEGG: pjd:Pjdr2_3477 ribosomal protein L19 YP_003398191.1 KEGG: cbi:CLJ_B2668 signal peptidase I; TIGRFAM: signal peptidase I; PFAM: Peptidase S24/S26A/S26B, conserved region YP_003398192.1 TIGRFAM: ribosome biogenesis GTP-binding protein YlqF; PFAM: GTP-binding protein HSR1-related; KEGG: bha:BH2476 hypothetical protein YP_003398193.1 PFAM: ribonuclease HII/HIII; KEGG: dsy:DSY2589 hypothetical protein YP_003398194.1 PFAM: protein of unknown function UPF0102; KEGG: hor:Hore_07400 conserved hypothetical protein TIGR00252 YP_003398195.1 KEGG: pth:PTH_1690 ATPase; TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase ChlI subunit; SMART: AAA ATPase YP_003398196.1 PFAM: peptidase A24A domain protein; Fimbrial assembly family protein; KEGG: cpo:COPRO5265_1030 leader peptidase PilD YP_003398198.1 PFAM: aminotransferase class I and II; KEGG: cdf:CD2382 putative aspartate aminotransferase YP_003398199.1 KEGG: ctc:CTC00344 uridine kinase YP_003398200.1 PFAM: aminotransferase class I and II; KEGG: amt:Amet_2618 aspartate aminotransferase YP_003398201.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: bcy:Bcer98_1792 DEAD/DEAH box helicase domain- containing protein YP_003398202.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: tte:TTE0929 glutamyl-tRNA synthetase YP_003398203.1 PFAM: ROK family protein; KEGG: cdf:CD2236 putative glucokinase YP_003398204.1 TIGRFAM: ribosomal protein L13; PFAM: ribosomal protein L13; KEGG: sth:STH3041 50S ribosomal protein L13 YP_003398205.1 PFAM: ribosomal protein S9; KEGG: cth:Cthe_1782 30S ribosomal protein S9 YP_003398206.1 TIGRFAM: thiamine biosynthesis protein ThiC; PFAM: thiamine biosynthesis protein ThiC; KEGG: tte:TTE1565 thiamine biosynthesis protein ThiC YP_003398207.1 TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate/ketoisovalerate oxidoreductase, gamma subunit; PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; Pyruvate/ketoisovalerate oxidoreductase; Pyruvate-flavodoxin oxidoreductase, EKR domain; 4Fe-4S ferredoxin iron-sulfur binding domain protein; thiamine pyrophosphate protein domain protein TPP-binding; KEGG: cby:CLM_3126 pyruvate ferredoxin oxidoreductase YP_003398208.1 TIGRFAM: Na/Pi-cotransporter II-related protein; PFAM: Na+/Picotransporter; PhoU family protein; KEGG: cno:NT01CX_1154 Na/Pi cotransporter family protein YP_003398209.1 PFAM: conserved hypothetical protein; KEGG: apa:APP7_2051 hypothetical protein YP_003398210.1 PFAM: glycosyl transferase family 2; KEGG: nmi:NMO_1519 beta 1,4 glucosyltransferase YP_003398211.1 PFAM: glycosyl transferase family 8; KEGG: bld:BLi04064 GspA YP_003398212.1 PFAM: O-antigen polymerase; KEGG: hor:Hore_18850 O-antigen polymerase YP_003398213.1 PFAM: glycosyl transferase family 2; KEGG: cbe:Cbei_4632 glycosyl transferase family protein YP_003398214.1 PFAM: glycosyl transferase family 8; KEGG: reu:Reut_A2558 glycosyl transferase family protein YP_003398215.1 PFAM: AAA-4 family protein; KEGG: dhd:Dhaf_4703 putative transcriptional regulator YP_003398216.1 PFAM: sulfatase; KEGG: hhe:HH1674 hypothetical protein YP_003398217.1 KEGG: sbo:SBO_0857 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase YP_003398218.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: mla:Mlab_0897 hypothetical protein YP_003398219.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: tro:trd_A0511 hydrolase, carbon-nitrogen family protein YP_003398220.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: apr:Apre_0099 amino acid carrier protein YP_003398221.1 TIGRFAM: trigger factor; PFAM: trigger factor domain; peptidylprolyl isomerase FKBP-type; trigger factor domain protein; KEGG: hor:Hore_14950 trigger factor YP_003398222.1 KEGG: spe:Spro_1095 ATP-dependent Clp protease, proteolytic subunit ClpP; TIGRFAM: ATP-dependent Clp protease, proteolytic subunit ClpP; PFAM: peptidase S14 ClpP YP_003398223.1 KEGG: aoe:Clos_2173 ATP-dependent protease ATP- binding subunit ClpX; TIGRFAM: ATP-dependent Clp protease, ATP-binding subunit ClpX; PFAM: ATPase AAA-2 domain protein; zinc finger C4 domain protein; Clp ATPase-like; SMART: AAA ATPase YP_003398224.1 KEGG: chy:CHY_0330 ATP-dependent protease La; TIGRFAM: ATP-dependent protease La; PFAM: peptidase S16 lon domain protein; AAA ATPase central domain protein; SMART: peptidase S16 lon domain protein; AAA ATPase YP_003398225.1 TIGRFAM: ribosome biogenesis GTP-binding protein YsxC; PFAM: GTP-binding protein HSR1-related; KEGG: cpf:CPF_1643 ribosome biogenesis GTP-binding protein YsxC YP_003398226.1 PFAM: NUDIX hydrolase; KEGG: pth:PTH_1823 hypothetical protein YP_003398227.1 PFAM: type II and III secretion system protein; Secretin/TonB short domain; KEGG: gem:GM21_2665 type IV pilus secretin PilQ YP_003398228.1 KEGG: nfa:nfa5130 hypothetical protein YP_003398229.1 PFAM: type II secretion system protein E; KEGG: dac:Daci_1299 general secretory pathway protein E YP_003398230.1 PFAM: protein of unknown function UPF0126; KEGG: cce:Ccel_1024 protein of unknown function UPF0126 YP_003398231.1 PFAM: protein of unknown function DUF520; KEGG: gsu:GSU3204 putative nucleotide-binding protein YP_003398232.1 KEGG: mta:Moth_2335 hypothetical protein YP_003398233.1 KEGG: mta:Moth_0251 excinuclease ABC subunit B; TIGRFAM: excinuclease ABC, B subunit; PFAM: helicase domain protein; type III restriction protein res subunit; UvrB/UvrC protein; SMART: DEAD-like helicase ; helicase domain protein YP_003398234.1 KEGG: chy:CHY_0259 excinuclease ABC, A subunit; TIGRFAM: excinuclease ABC, A subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_003398235.1 KEGG: dae:Dtox_3952 excinuclease ABC, C subunit; TIGRFAM: excinuclease ABC, C subunit; PFAM: excinuclease ABC C subunit domain protein; Excinuclease ABC C subunit domain protein; UvrB/UvrC protein; SMART: Excinuclease ABC C subunit domain protein YP_003398236.1 PFAM: Rubredoxin-type Fe(Cys)4 protein; KEGG: cno:NT01CX_1169 rubredoxin YP_003398237.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: bhy:BHWA1_02024 LysR family transcriptional regulator YP_003398238.1 KEGG: pdi:BDI_0980 alpha/beta family hydrolase YP_003398239.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: fma:FMG_1265 NADH-dependent butanol dehydrogenase YP_003398240.1 KEGG: cko:CKO_02592 hypothetical protein YP_003398241.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: lba:Lebu_1438 LysR family transcriptional regulator YP_003398242.1 PFAM: aldo/keto reductase; KEGG: ere:EUBREC_3461 oxidoreductase, aldo/keto reductase family YP_003398243.1 PFAM: aldo/keto reductase; KEGG: lac:LBA0558 aldehyde reductase YP_003398244.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: msu:MS2158 hypothetical protein YP_003398245.1 KEGG: lba:Lebu_1430 hypothetical protein YP_003398246.1 KEGG: dth:DICTH_0011 flavodoxin YP_003398247.1 TIGRFAM: twin-arginine translocation protein, TatA/E family subunit; PFAM: sec-independent translocation protein mttA/Hcf106; KEGG: mta:Moth_1278 sec-independent protein translocase TatA YP_003398248.1 TIGRFAM: Sec-independent protein translocase, TatC subunit; PFAM: Sec-independent periplasmic protein translocase; KEGG: dba:Dbac_2494 sec-independent protein translocase, TatC subunit YP_003398249.1 KEGG: pth:PTH_2212 phosphatase YP_003398250.1 KEGG: bvu:BVU_3085 flavodoxin YP_003398251.1 KEGG: shi:Shel_17170 hypothetical protein YP_003398252.1 PFAM: Carboxymuconolactone decarboxylase; KEGG: bfs:BF2138 carboxymuconolactone decarboxylase YP_003398254.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: lwe:lwe0390 LysR family transcriptional regulator YP_003398255.1 KEGG: dae:Dtox_0028 radical SAM domain protein YP_003398256.1 TIGRFAM: Cof-like hydrolase; HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; KEGG: dae:Dtox_3945 Cof-like hydrolase YP_003398257.1 PFAM: conserved hypothetical protein; KEGG: ctc:CTC02495 hypothetical protein YP_003398258.1 PFAM: protein of unknown function UPF0052 and CofD; KEGG: dae:Dtox_3940 protein of unknown function UPF0052 and CofD YP_003398259.1 PFAM: protein of unknown function DUF199; Sporulation regulator WhiA-like; KEGG: bcb:BCB4264_A5272 hypothetical protein YP_003398260.1 PFAM: polysaccharide deacetylase; KEGG: chy:CHY_0274 polysaccharide deacetylase family protein YP_003398261.1 KEGG: drm:Dred_3299 hypothetical protein YP_003398262.1 PFAM: Radical SAM domain protein; KEGG: aoe:Clos_1718 radical SAM domain-containing protein YP_003398263.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: drm:Dred_1781 enoyl-CoA hydratase/isomerase YP_003398265.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: cce:Ccel_1759 RNA-metabolising metallo-beta- lactamase YP_003398266.1 TIGRFAM: GTP-binding protein TypA; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; KEGG: cac:CAC1684 TypA/BipA type GTPase YP_003398267.1 PFAM: protein of unknown function DUF552 YP_003398268.1 KEGG: pth:PTH_2220 DNA polymerase III DnaE; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; SMART: phosphoesterase PHP domain protein YP_003398269.1 PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: apr:Apre_1355 electron transfer flavoprotein alpha/beta-subunit YP_003398270.1 PFAM: Electron transfer flavoprotein alpha subunit ; Electron transfer flavoprotein alpha/beta-subunit; KEGG: cbl:CLK_2702 electron transfer flavoprotein, alpha subunit/FixB family protein YP_003398271.1 TIGRFAM: pyruvate kinase; PFAM: Pyruvate kinase barrel; Pyruvate kinase alpha/beta; PEP-utilising protein mobile region; KEGG: bbe:BBR47_13840 pyruvate kinase YP_003398272.1 PFAM: acyltransferase 3; KEGG: aoe:Clos_0058 acyltransferase 3 YP_003398273.1 KEGG: cpo:COPRO5265_0171 HymD protein YP_003398274.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: ere:EUBREC_2802 potassium transporter peripheral membrane component YP_003398275.1 PFAM: cation transporter; KEGG: eel:EUBELI_01578 trk system potassium uptake protein TrkH YP_003398276.1 PFAM: PHP domain protein; KEGG: eat:EAT1b_1202 protein-tyrosine-phosphatase YP_003398277.1 PFAM: polysaccharide export protein; Soluble ligand binding domain; KEGG: cyc:PCC7424_4601 polysaccharide export protein YP_003398278.1 PFAM: lipopolysaccharide biosynthesis protein; KEGG: pmo:Pmob_0944 exopolysaccharide tyrosine- protein kinase YP_003398279.1 TIGRFAM: capsular exopolysaccharide family; KEGG: cno:NT01CX_1523 capsular polysaccharide biosynthesis protein Cap1B YP_003398280.1 KEGG: cac:CAC2330 sugar transferase involved in lipopolysaccharide synthesis; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase YP_003398281.1 PFAM: glycosyl transferase family 2; KEGG: nam:NAMH_1654 teichuronic acid biosynthesis YP_003398282.1 KEGG: pdi:BDI_0439 putative glycosyltransferase YP_003398283.1 TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; KEGG: pdi:BDI_2215 UDP-glucose 6-dehydrogenase YP_003398284.1 PFAM: glycosyl transferase group 1; KEGG: cpf:CPF_0914 capsular polysaccharide biosynthesis protein YP_003398285.1 KEGG: cpf:CPF_0915 putative polysaccharide polymerase protein YP_003398286.1 KEGG: gka:GK3309 serine acetyltransferase YP_003398287.1 PFAM: glycosyl transferase family 2; KEGG: ate:Athe_0061 glycosyl transferase family 2 YP_003398288.1 KEGG: sjj:SPJ_0086 hypothetical protein YP_003398289.1 KEGG: bce:BC5266 heteropolysaccharide repeat- containing protein YP_003398290.1 TIGRFAM: glucose-1-phosphate thymidylyltransferase; PFAM: Nucleotidyl transferase; KEGG: dhd:Dhaf_4472 glucose-1-phosphate thymidylyltransferase YP_003398291.1 PFAM: S23 ribosomal protein; KEGG: tbd:Tbd_0653 hypothetical protein YP_003398292.1 TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: eel:EUBELI_00086 dTDP-glucose 4,6-dehydratase YP_003398293.1 TIGRFAM: dTDP-4-dehydrorhamnose reductase; PFAM: dTDP-4-dehydrorhamnose reductase; KEGG: lga:LGAS_1133 dTDP-4-dehydrorhamnose reductase YP_003398294.1 KEGG: lbu:LBUL_1836 dTDP-4-dehydrorhamnose 3,5- epimerase related enzyme; TIGRFAM: dTDP-4-dehydrorhamnose 3,5-epimerase; PFAM: dTDP-4-dehydrorhamnose 35-epimerase related YP_003398295.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: mmy:MSC_1062 AAA ATPase family protein YP_003398296.1 KEGG: lwe:lwe0773 AAA - ATPase, putative YP_003398297.1 KEGG: rrs:RoseRS_1475 hypothetical protein YP_003398298.1 KEGG: cyt:cce_2019 hypothetical protein YP_003398300.1 PFAM: Domain of unknown function DUF1828; Domain of unknown function DUF1829; KEGG: cts:Ctha_2640 domain of unknown function DUF1828 YP_003398301.1 KEGG: pfu:PF1996 deoxycytidine triphosphate deaminase YP_003398302.1 KEGG: gur:Gura_3176 hypothetical protein YP_003398303.1 PFAM: phosphoglucose isomerase (PGI); KEGG: hor:Hore_19060 glucose-6-phosphate isomerase YP_003398304.1 PFAM: glycosyl transferase family 51; KEGG: aae:aq_624 penicillin binding protein 1A YP_003398305.1 KEGG: mta:Moth_2288 acetylglutamate kinase; TIGRFAM: acetylglutamate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003398306.1 KEGG: pth:PTH_0504 acetylornithine aminotransferase; TIGRFAM: acetylornithine and succinylornithine aminotransferase; PFAM: aminotransferase class-III YP_003398307.1 KEGG: mta:Moth_2286 ornithine carbamoyltransferase; TIGRFAM: ornithine carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase Asp/Orn-binding region; aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain YP_003398308.1 KEGG: dhd:Dhaf_0795 argininosuccinate synthase; TIGRFAM: argininosuccinate synthase; PFAM: argininosuccinate synthase YP_003398309.1 TIGRFAM: argininosuccinate lyase; PFAM: fumarate lyase; KEGG: pth:PTH_0517 argininosuccinate lyase YP_003398310.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; KEGG: apr:Apre_0497 amidohydrolase YP_003398311.1 PFAM: protein of unknown function DUF147; KEGG: drm:Dred_0292 hypothetical protein YP_003398312.1 PFAM: YbbR family protein; KEGG: mta:Moth_2247 YbbR-like YP_003398313.1 PFAM: FAD dependent oxidoreductase; fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: gme:Gmet_2676 FAD dependent oxidoreductase YP_003398314.1 PFAM: DHHA2 domain protein; phosphoesterase RecJ domain protein; KEGG: cac:CAC2138 putative manganese-dependent inorganic pyrophosphatase YP_003398316.1 KEGG: tte:TTE0387 isocitrate dehydrogenase; TIGRFAM: isocitrate dehydrogenase, NADP-dependent; PFAM: isocitrate/isopropylmalate dehydrogenase YP_003398318.1 KEGG: tpd:Teth39_1726 hypothetical protein YP_003398320.1 PFAM: GCN5-related N-acetyltransferase; KEGG: blj:BLD_0148 acetyltransferase YP_003398321.1 PFAM: protein of unknown function DUF1063; KEGG: dhd:Dhaf_2196 protein of unknown function DUF1063 YP_003398322.1 PFAM: Xanthine/uracil/vitamin C permease; KEGG: eel:EUBELI_01284 putative MFS transporter, AGZA family, xanthine/uracil permease YP_003398323.1 TIGRFAM: ATP-dependent DNA helicase PcrA; PFAM: UvrD/REP helicase; KEGG: gwc:GWCH70_0270 ATP-dependent DNA helicase PcrA YP_003398324.1 KEGG: pth:PTH_2527 NAD-dependent DNA ligase; TIGRFAM: DNA ligase, NAD-dependent; PFAM: NAD-dependent DNA ligase adenylation; NAD- dependent DNA ligase OB-fold; zinc-finger NAD-dependent DNA ligase C4-type; BRCT domain protein; SMART: NAD-dependent DNA ligase ; Helix-hairpin- helix DNA-binding class 1; BRCT domain protein YP_003398325.1 PFAM: carbon starvation protein CstA; KEGG: eel:EUBELI_01881 carbon starvation protein YP_003398327.1 PFAM: fumarylacetoacetate (FAA) hydrolase; KEGG: cbe:Cbei_4954 5-carboxymethyl-2- hydroxymuconate delta-isomerase YP_003398328.1 PFAM: PhoH family protein; KEGG: tte:TTE0970 phosphate starvation-inducible protein PhoH, ATPase YP_003398329.1 PFAM: protein of unknown function UPF0054; KEGG: dsy:DSY3109 hypothetical protein YP_003398330.1 TIGRFAM: cytidine deaminase; PFAM: CMP/dCMP deaminase zinc-binding; KEGG: sth:STH533 cytidine deaminase YP_003398331.1 TIGRFAM: GTP-binding protein Era; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KH type 2 domain protein; KEGG: bbe:BBR47_20660 probable GTP-binding protein YP_003398332.1 PFAM: hypothetical protein; protein of unknown function DUF21; transporter-associated region; KEGG: dhd:Dhaf_3277 protein of unknown function DUF21 YP_003398333.1 TIGRFAM: DNA repair protein RecO; PFAM: Recombination protein O RecO; KEGG: pth:PTH_0897 recombinational DNA repair protein YP_003398335.1 KEGG: dhd:Dhaf_4586 exodeoxyribonuclease III Xth; TIGRFAM: exodeoxyribonuclease III; exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase YP_003398336.1 PFAM: ADP-ribosylation/Crystallin J1; KEGG: hmo:HM1_2922 ADP-ribosyl glycohydrolase, putative YP_003398337.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cac:CAC1046 LysR family transcriptional regulator YP_003398338.1 PFAM: protein of unknown function DUF453; KEGG: bay:RBAM_031870 YraM YP_003398339.1 PFAM: Dicarboxylate carrier MatC domain protein; Citrate transporter; KEGG: aoe:Clos_0814 dicarboxylate carrier MatC domain-containing protein YP_003398340.1 PFAM: aconitate hydratase domain protein; KEGG: kpe:KPK_4725 hypothetical protein YP_003398341.1 TIGRFAM: prolipoprotein diacylglyceryl transferase; PFAM: prolipoprotein diacylglyceryl transferase; KEGG: aac:Aaci_1954 prolipoprotein diacylglyceryl transferase YP_003398342.1 PFAM: metallophosphoesterase; KEGG: amt:Amet_3677 metallophosphoesterase YP_003398343.1 TIGRFAM: leucyl-tRNA synthetase; KEGG: cth:Cthe_1237 leucyl-tRNA synthetase YP_003398344.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: fnu:FN0501 arginase YP_003398345.1 KEGG: kra:Krad_0489 dTMP kinase; TIGRFAM: thymidylate kinase; PFAM: thymidylate kinase YP_003398346.1 KEGG: cth:Cthe_2105 DNA polymerase III, delta prime subunit YP_003398347.1 PFAM: PSP1 domain protein; KEGG: bcy:Bcer98_0027 PSP1 domain-containing protein YP_003398348.1 PFAM: Methyltransferase type 11; KEGG: cdf:CD3547 hypothetical protein YP_003398349.1 PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: mta:Moth_0046 hypothetical protein YP_003398350.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: lbu:LBUL_1558 transcriptional regulator YP_003398351.1 PFAM: Uncharacterised protein family UPF0324; KEGG: ldb:Ldb1684 hypothetical protein YP_003398352.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bad:BAD_0728 putative Na+-driven multidrug efflux pump YP_003398353.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: eel:EUBELI_00454 putative hydrolases of HD superfamily YP_003398354.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: eel:EUBELI_20029 peroxiredoxin (alkyl hydroperoxide reductase subunit C) YP_003398355.1 PFAM: protein of unknown function DUF328; KEGG: ere:EUBREC_1226 hypothetical protein YP_003398356.1 PFAM: glycoside hydrolase family 18; SMART: chitinase II; KEGG: bbe:BBR47_10680 hypothetical protein YP_003398357.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: drm:Dred_0727 extracellular solute-binding protein YP_003398358.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: dau:Daud_1135 extracellular solute-binding protein YP_003398359.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: chy:CHY_0505 glutamine ABC transporter, permease protein YP_003398360.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dhd:Dhaf_4750 ABC transporter related YP_003398361.1 TIGRFAM: ribosomal subunit interface protein; PFAM: sigma 54 modulation protein/ribosomal protein S30EA; KEGG: pth:PTH_2754 ribosome-associated protein Y YP_003398362.1 TIGRFAM: preprotein translocase, SecA subunit; PFAM: SecA DEAD domain protein; SecA preprotein cross-linking region; helicase domain protein; SecA Wing and Scaffold; KEGG: hmo:HM1_1266 preprotein translocase, SecA subunit YP_003398363.1 TIGRFAM: peptide chain release factor 2; PFAM: Class I peptide chain release factor; PCRF domain protein; KEGG: gwc:GWCH70_3007 hypothetical protein YP_003398364.1 KEGG: hor:Hore_16410 hypothetical protein YP_003398365.1 TIGRFAM: polysaccharide pyruvyl transferase CsaB; PFAM: polysaccharide pyruvyl transferase; KEGG: amt:Amet_4140 polysaccharide pyruvyl transferase YP_003398366.1 KEGG: eat:EAT1b_0892 cell division ATP-binding protein FtsE; TIGRFAM: cell division ATP-binding protein FtsE; PFAM: ABC transporter related; SMART: AAA ATPase YP_003398367.1 PFAM: protein of unknown function DUF214; KEGG: tpd:Teth39_0564 hypothetical protein YP_003398368.1 PFAM: Peptidase M23; KEGG: dae:Dtox_3964 peptidase M23 YP_003398369.1 KEGG: tye:THEYE_A1481 carboxy-terminal processing protease; TIGRFAM: carboxyl-terminal protease; PFAM: peptidase S41; PDZ/DHR/GLGF domain protein; SMART: peptidase S41; PDZ/DHR/GLGF domain protein YP_003398370.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: glo:Glov_0565 multi-sensor hybrid histidine kinase YP_003398371.1 KEGG: shi:Shel_21620 apurinic endonuclease APN1; TIGRFAM: apurinic endonuclease Apn1; PFAM: Xylose isomerase domain protein TIM barrel; SMART: AP endonuclease family 2 YP_003398372.1 TIGRFAM: proton-coupled thiamine transporter YuaJ; PFAM: thiamine transporter YuaJ; KEGG: cac:CAC2928 hypothetical protein YP_003398373.1 TIGRFAM: translation initiation factor IF-3; PFAM: Translation initiation factor 3-like; KEGG: dae:Dtox_2400 translation initiation factor IF-3 YP_003398374.1 TIGRFAM: ribosomal protein L35; PFAM: ribosomal protein L35; KEGG: ter:Tery_1881 50S ribosomal protein L35 YP_003398375.1 TIGRFAM: ribosomal protein L20; PFAM: ribosomal protein L20; KEGG: cce:Ccel_1313 ribosomal protein L20 YP_003398376.1 PFAM: protein of unknown function UPF0150; HicB family protein; KEGG: lbu:LBUL_0254 hypothetical protein YP_003398377.1 TIGRFAM: ribosomal protein S15; PFAM: ribosomal protein S15; KEGG: gur:Gura_1905 30S ribosomal protein S15 YP_003398378.1 TIGRFAM: uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: drm:Dred_1317 uracil transporter YP_003398379.1 TIGRFAM: GMP synthase, large subunit; GMP synthase, small subunit; PFAM: GMP synthase domain protein; glutamine amidotransferase class-I; tRNA methyl transferase-like; KEGG: cbe:Cbei_0332 GMP synthase YP_003398380.1 KEGG: lhe:lhv_0422 hypothetical protein YP_003398381.1 KEGG: lga:LGAS_0243 hypothetical protein YP_003398382.1 PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: ere:EUBREC_2364 low specificity L-threonine aldolase YP_003398383.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: shi:Shel_16640 hypothetical protein YP_003398384.1 PFAM: Chromate transporter; KEGG: ere:EUBREC_3626 chromate transport protein YP_003398385.1 PFAM: Chromate transporter; KEGG: ere:EUBREC_3625 chromate transport protein YP_003398386.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: ere:EUBREC_3350 hypothetical protein YP_003398387.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: Clan MH, family M20, peptidase T-like metallopeptidase YP_003398388.1 PFAM: bifunctional deaminase-reductase domain protein; KEGG: dhd:Dhaf_3920 5-amino-6-(5- phosphoribosylamino)uracil reductase YP_003398389.1 PFAM: Methyltransferase type 12; KEGG: ckr:CKR_2211 hypothetical protein YP_003398390.1 PFAM: ABC transporter related; KEGG: ele:Elen_1467 ABC transporter related YP_003398391.1 PFAM: protein of unknown function DUF542 ScdA domain protein; Hemerythrin HHE cation binding domain protein; KEGG: ctc:CTC01874 hypothetical protein YP_003398392.1 KEGG: rca:Rcas_1163 diguanylate cyclase with PAS/PAC sensor; TIGRFAM: PAS sensor protein; PFAM: PAS fold domain protein; SMART: PAS domain containing protein YP_003398393.1 PFAM: EAL domain protein; PAS fold-3 domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein; PAS domain containing protein; KEGG: ele:Elen_1086 diguanylate cyclase/phosphodiesterase YP_003398394.1 PFAM: protein of unknown function UPF0074; KEGG: mpe:MYPE3120 hypothetical protein YP_003398395.1 PFAM: thioesterase superfamily protein; KEGG: aba:Acid345_1409 4-hydroxybenzoyl-CoA thioesterase YP_003398397.1 PFAM: protein of unknown function DUF129; KEGG: tte:TTE2365 hypothetical protein YP_003398398.1 KEGG: eat:EAT1b_2634 non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family; TIGRFAM: non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family; PFAM: Ham1 family protein YP_003398399.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: sth:STH345 putative phosphoesterase YP_003398400.1 PFAM: malic protein NAD-binding; malic protein domain protein; KEGG: chy:CHY_1369 NAD-dependent malic enzyme YP_003398401.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: tpd:Teth39_1334 YaeC family lipoprotein YP_003398402.1 KEGG: sgo:SGO_0562 helix-turn-helix domain- containing protein YP_003398403.1 PFAM: cytidylyltransferase; metal-dependent phosphohydrolase HD sub domain; KEGG: aoe:Clos_2711 cytidyltransferase-like protein YP_003398404.1 KEGG: aoe:Clos_2712 malate/lactate dehydrogenase YP_003398405.1 KEGG: aoe:Clos_2713 NADPH-dependent FMN reductase YP_003398406.1 TIGRFAM: anion transporter; PFAM: sodium/sulphate symporter; KEGG: bay:RBAM_007730 YflS YP_003398407.1 KEGG: eel:EUBELI_00163 nicotinate phosphoribosyltransferase; TIGRFAM: nicotinate phosphoribosyltransferase; PFAM: Nicotinate phosphoribosyltransferase-like YP_003398408.1 KEGG: eel:EUBELI_00738 oxygen-independent coproporphyrinogen III oxidase; TIGRFAM: oxygen-independent coproporphyrinogen III oxidase; PFAM: Radical SAM domain protein; HemN domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003398409.1 TIGRFAM: heat-inducible transcription repressor HrcA; PFAM: Negative regulator of class I heat shock protein; KEGG: pth:PTH_0875 transcriptional regulator of heat shock gene YP_003398410.1 PFAM: GrpE protein; KEGG: bha:BH1345 heat-shock protein (activation of DnaK) YP_003398411.1 TIGRFAM: chaperone protein DnaK; PFAM: Heat shock protein 70; KEGG: mta:Moth_0585 molecular chaperone DnaK YP_003398412.1 KEGG: hor:Hore_12790 chaperone protein DnaJ; TIGRFAM: chaperone protein DnaJ; PFAM: chaperone DnaJ domain protein; DnaJ central domain protein; heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein YP_003398413.1 PFAM: Polypeptide-transport-associated domain protein ShlB-type; KEGG: avn:Avin_37880 hypothetical protein YP_003398414.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; PFAM: filamentous haemagglutinin domain protein; KEGG: cch:Cag_1053 filamentous haemagglutinin-like YP_003398415.1 KEGG: rce:RC1_0943 the GLUG motif domain protein, putative YP_003398416.1 TIGRFAM: ribosomal protein L11 methyltransferase; PFAM: ribosomal L11 methyltransferase; KEGG: dsy:DSY3128 ribosomal protein L11 methylase YP_003398417.1 PFAM: protein of unknown function DUF558; KEGG: cth:Cthe_1319 hypothetical protein YP_003398418.1 KEGG: drm:Dred_2492 RNA modification protein; TIGRFAM: RNA modification enzyme, MiaB family; MiaB- like tRNA modifying enzyme; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003398419.1 PFAM: histidine triad (HIT) protein; KEGG: cpf:CPF_2281 HIT family protein YP_003398420.1 TIGRFAM: ribosomal protein S21; PFAM: ribosomal protein S21; KEGG: sth:STH514 30S ribosomal protein S21 YP_003398421.1 PFAM: Protein of unknown function; KEGG: hmo:HM1_2443 GatB/YqeY domain protein YP_003398422.1 PFAM: aminotransferase class I and II; KEGG: cac:CAC2832 aspartate aminotransferase YP_003398423.1 PFAM: peptidase M48 Ste24p; KEGG: hypothetical protein LOC100231385 ; K06013 STE24 endopeptidase YP_003398424.1 PFAM: transcription factor CarD; KEGG: aoe:Clos_0460 CarD family transcriptional regulator YP_003398425.1 PFAM: PilT protein domain protein; SMART: Nucleotide binding protein PINc; KEGG: hmo:HM1_1353 pin domain protein YP_003398426.1 TIGRFAM: 2C-methyl-D-erythritol 2,4- cyclodiphosphate synthase; 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase; PFAM: MECDP-synthase; 4-diphosphocytidyl-2C-methyl- D-erythritol synthase; KEGG: dau:Daud_0186 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase YP_003398427.1 TIGRFAM: glutamyl-tRNA synthetase; PFAM: glutamyl/glutaminyl-tRNA synthetase, class Ic, catalytic domain; KEGG: drm:Dred_0191 glutamyl-tRNA synthetase YP_003398428.1 KEGG: pth:PTH_0295 cysteinyl-tRNA synthetase; TIGRFAM: cysteinyl-tRNA synthetase; PFAM: Cysteinyl-tRNA synthetase class Ia ; Cysteinyl-tRNA synthetase class Ia DALR YP_003398429.1 PFAM: ribonuclease III; SMART: ribonuclease III; KEGG: tte:TTE2314 hypothetical protein YP_003398430.1 KEGG: chy:CHY_2336 FAD-dependent thymidylate synthase; TIGRFAM: thymidylate synthase, flavin-dependent; PFAM: thymidylate synthase complementing protein ThyX YP_003398432.1 PFAM: phosphoesterase PA-phosphatase related; SMART: phosphoesterase PA-phosphatase related; KEGG: ssa:SSA_0780 acid phosphatase YP_003398433.1 KEGG: drm:Dred_3137 undecaprenyl-phosphate galactose phosphotransferase; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; Undecaprenyl-phosphate galactose phosphotransferase, WbaP; PFAM: sugar transferase YP_003398435.1 KEGG: pth:PTH_0148 hypothetical protein YP_003398436.1 KEGG: gka:GK1394 hypothetical protein YP_003398437.1 KEGG: ere:EUBREC_2761 UDP-galactopyranose mutase; TIGRFAM: UDP-galactopyranose mutase; PFAM: UDP-galactopyranose mutase-like YP_003398438.1 PFAM: S23 ribosomal protein; KEGG: fjo:Fjoh_0743 S23 ribosomal protein YP_003398439.1 KEGG: cby:CLM_3048 exopolysaccharide biosynthesis protein YP_003398440.1 KEGG: cbe:Cbei_1670 hypothetical protein YP_003398441.1 KEGG: bcy:Bcer98_3736 putative transposase YP_003398442.1 KEGG: cth:Cthe_2132 abortive infection protein, putative YP_003398443.1 KEGG: cth:Cthe_2133 hypothetical protein YP_003398444.1 KEGG: ere:EUBREC_2750 hypothetical protein YP_003398446.1 PFAM: Integrase catalytic region; KEGG: afl:Aflv_2103 transposase YP_003398447.1 KEGG: bcy:Bcer98_3736 putative transposase YP_003398448.1 PFAM: LicD family protein; KEGG: spp:SPP_1311 phosphotransferase YP_003398449.1 PFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol synthase; KEGG: bvu:BVU_2951 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase YP_003398450.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: bvu:BVU_2952 putative epimerase/dehydratase YP_003398451.1 PFAM: glycosyl transferase family 2; KEGG: ccu:Ccur_05920 glycosyl transferase YP_003398452.1 PFAM: glycosyl transferase family 2; KEGG: efa:EF2170 glycosyl transferase, group 2 family protein YP_003398453.1 PFAM: glycosyl transferase family 2; KEGG: bce:BC5267 glycosyltransferase YP_003398454.1 PFAM: polysaccharide biosynthesis protein; KEGG: lsp:Bsph_1637 membrane protein involved in the export of O-antigen and teichoic acid YP_003398455.1 KEGG: lfe:LAF_0101 hypothetical protein YP_003398457.1 PFAM: plasmid maintenance system killer; KEGG: swo:Swol_0482 hypothetical protein YP_003398458.1 PFAM: helix-turn-helix domain protein; protein of unknown function DUF955; SMART: helix-turn-helix domain protein; KEGG: eel:EUBELI_00210 hypothetical protein YP_003398459.1 KEGG: ere:EUBREC_2497 putative helicase; TIGRFAM: CRISPR-associated helicase Cas3; PFAM: DEAD/DEAH box helicase domain protein; metal- dependent phosphohydrolase HD sub domain; SMART: DEAD-like helicase YP_003398460.1 TIGRFAM: CRISPR-associated protein Cas5 family; CRISPR-associated protein Cas5; PFAM: CRISPR-associated protein CT1134; KEGG: ere:EUBREC_2494 hypothetical protein YP_003398461.1 TIGRFAM: CRISPR-associated protein, Csd1 family; PFAM: CRISPR-associated protein CT1133; KEGG: ere:EUBREC_2493 hypothetical protein YP_003398462.1 TIGRFAM: CRISPR-associated protein, Csd2 family; CRISPR-associated protein, CT1132 family; PFAM: CRISPR-associated protein TM1801; KEGG: ere:EUBREC_2492 hypothetical protein YP_003398463.1 TIGRFAM: CRISPR-associated protein Cas4; PFAM: CRISPR-associated protein Cas4; KEGG: ere:EUBREC_2491 hypothetical protein YP_003398464.1 TIGRFAM: CRISPR-associated protein Cas1; PFAM: protein of unknown function DUF48; KEGG: bha:BH0341 hypothetical protein YP_003398465.1 TIGRFAM: CRISPR-associated protein Cas2; PFAM: protein of unknown function DUF196; KEGG: swo:Swol_0481 hypothetical protein YP_003398466.1 KEGG: eat:EAT1b_1148 hypothetical protein YP_003398467.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: cdf:CD2822 putative peptidase YP_003398469.1 PFAM: NADPH-dependent FMN reductase; KEGG: eel:EUBELI_00462 hypothetical protein YP_003398470.1 TIGRFAM: peptide chain release factor 3; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; KEGG: hmo:HM1_1671 peptide chain release factor 3 YP_003398471.1 KEGG: mta:Moth_2365 N-acetylmannosaminyltransferase; TIGRFAM: glycosyl transferase, WecB/TagA/CpsF family; PFAM: glycosyl transferase WecB/TagA/CpsF YP_003398472.1 KEGG: dae:Dtox_2946 phosphatidylserine decarboxylase related protein; TIGRFAM: phosphatidylserine decarboxylase related protein; PFAM: phosphatidylserine decarboxylase-related YP_003398473.1 TIGRFAM: CDP-diacylglycerol/serine O- phosphatidyltransferase; PFAM: CDP-alcohol phosphatidyltransferase; KEGG: wsu:WS0623 phosphatidyltransferase YP_003398474.1 PFAM: glycosyl transferase family 2; KEGG: dhd:Dhaf_0177 glycosyl transferase family 2 YP_003398475.1 TIGRFAM: magnesium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; cation transporting ATPase domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: cpy:Cphy_0543 magnesium-translocating P-type ATPase YP_003398477.1 PFAM: Amino acid transporter transmembrane; KEGG: pag:PLES_12131 putative aromatic amino acid transporter YP_003398478.1 PFAM: Bile acid:sodium symporter; KEGG: oih:OB0994 sodium-dependent transporter YP_003398479.1 KEGG: cth:Cthe_0901 pantoate--beta-alanine ligase; TIGRFAM: pantoate/beta-alanine ligase; PFAM: Pantoate-beta-alanine ligase YP_003398480.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cjr:CJE1000 amino acid ABC transporter, ATP- binding protein PEB1 YP_003398481.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: cbe:Cbei_4172 extracellular solute-binding protein YP_003398482.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cju:C8J_0857 amino acid ABC transporter permease YP_003398483.1 TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cbe:Cbei_4170 polar amino acid ABC transporter, inner membrane subunit YP_003398484.1 PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_3948 nitroreductase YP_003398485.1 KEGG: llm:llmg_2143 putative 20-kDa protein YP_003398486.1 PFAM: UMUC domain protein DNA-repair protein; KEGG: cpy:Cphy_2148 DNA-repair protein YP_003398487.1 KEGG: blj:BLD_0870 hypothetical protein YP_003398488.1 KEGG: apa:APP7_0243 N-acetyl-gamma-glutamyl- phosphate reductase; TIGRFAM: N-acetyl-gamma-glutamyl-phosphate reductase; PFAM: Semialdehyde dehydrogenase NAD - binding YP_003398489.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; NUDIX hydrolase; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: bpe:BP0217 3-hydroxybutyryl-CoA dehydrogenase YP_003398490.1 PFAM: cyclic nucleotide-binding; SMART: cyclic nucleotide-binding; regulatory protein Crp; KEGG: cbe:Cbei_2277 CRP/FNR family transcriptional regulator YP_003398491.1 KEGG: efa:EF1612 pyruvate formate-lyase activating enzyme; TIGRFAM: pyruvate formate-lyase activating enzyme; PFAM: Radical SAM domain protein YP_003398492.1 KEGG: eel:EUBELI_20055 formate C-acetyltransferase; TIGRFAM: formate acetyltransferase; PFAM: pyruvate formate-lyase PFL; formate C- acetyltransferase glycine radical YP_003398493.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: bbr:BB4169 hypothetical protein YP_003398494.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: vap:Vapar_2924 peptidase M20 YP_003398495.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: bbe:BBR47_40890 pseudouridine synthase YP_003398496.1 KEGG: scl:sce0884 hypothetical protein YP_003398497.1 PFAM: Phosphomethylpyrimidine kinase type-1; KEGG: dvl:Dvul_2201 pyridoxamine kinase YP_003398498.1 KEGG: lga:LGAS_1558 hypothetical protein YP_003398499.1 KEGG: lac:LBA0469 hypothetical protein YP_003398500.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: lga:LGAS_1556 Lhr-like helicase YP_003398501.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bad:BAD_0632 MATE efflux family protein YP_003398502.1 KEGG: pca:Pcar_0936 GGDEF domain-containing protein; TIGRFAM: diguanylate cyclase; PAS sensor protein; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; SMART: GGDEF domain containing protein YP_003398503.1 PFAM: Domain of unknown function DUF1848; KEGG: mla:Mlab_0293 hypothetical protein YP_003398504.1 PFAM: GCN5-related N-acetyltransferase; KEGG: ele:Elen_1945 GCN5-related N- acetyltransferase YP_003398505.1 KEGG: cdf:CD2965 putative signaling protein; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; PAS domain containing protein; GGDEF domain containing protein YP_003398506.1 TIGRFAM: thiW protein; PFAM: ThiW family protein; KEGG: cbf:CLI_2304 ThiW protein YP_003398507.1 PFAM: hydroxyethylthiazole kinase; KEGG: cbf:CLI_2303 hydroxyethylthiazole kinase YP_003398508.1 PFAM: AbgT putative transporter; KEGG: ctc:CTC00584 putative efflux pump component MtrF YP_003398509.1 PFAM: amidohydrolase; KEGG: aoe:Clos_2476 amidohydrolase YP_003398510.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; KEGG: tde:TDE0868 oxidoreductase, FAD/FMN-binding YP_003398511.1 PFAM: peptidase U34 dipeptidase; KEGG: bad:BAD_0168 dipeptidase YP_003398512.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: cpy:Cphy_0116 ArsR family transcriptional regulator YP_003398513.1 TIGRFAM: phosphocarrier, HPr family; PFAM: phosphoryl transfer system HPr; KEGG: cpy:Cphy_1769 phosphotransferase system, phosphocarrier protein HPr YP_003398514.1 TIGRFAM: phosphoenolpyruvate-protein phosphotransferase; PFAM: PEP-utilizing protein; PEP-utilising protein domain protein; PEP-utilising protein mobile region; KEGG: cpy:Cphy_1770 phosphoenolpyruvate-protein phosphotransferase YP_003398515.1 KEGG: cco:CCC13826_0299 spore coat polysaccharide biosynthesis protein SpsC-like protein YP_003398516.1 PFAM: protein of unknown function DUF633; KEGG: sth:STH597 hypothetical protein YP_003398517.1 PFAM: protein of unknown function DUF34; KEGG: cpe:CPE2004 hypothetical protein YP_003398518.1 KEGG: sat:SYN_02192 HD-superfamily hydrolase; TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region YP_003398519.1 TIGRFAM: thioredoxin; PFAM: Thioredoxin domain; KEGG: rba:RB12160 thioredoxin 1 YP_003398520.1 PFAM: glycosyl transferase family 2; KEGG: btl:BALH_4936 glycosyltransferase, group 2 family protein YP_003398521.1 PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: bha:BH3671 cell wall lytic activity YP_003398522.1 PFAM: iron dependent repressor; SMART: iron dependent repressor; KEGG: cth:Cthe_0620 DtxR family iron dependent repressor YP_003398523.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: cce:Ccel_1658 two component transcriptional regulator, winged helix family YP_003398524.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; histidine kinase HAMP region domain protein; KEGG: dsy:DSY0822 hypothetical protein YP_003398525.1 PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase; KEGG: sus:Acid_7552 peptidase M15D, VanX D-ala-D- ala dipeptidase YP_003398526.1 PFAM: protein of unknown function DUF964; KEGG: ate:Athe_0692 protein of unknown function DUF964 YP_003398527.1 KEGG: ere:EUBREC_0696 UDP-N- acetylenolpyruvoylglucosamine reductase; TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase; PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein; FAD linked oxidase domain protein YP_003398528.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cac:CAC1045 permease YP_003398529.1 PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: dhd:Dhaf_4885 glyoxalase/bleomycin resistance protein/dioxygenase YP_003398530.1 TIGRFAM: large conductance mechanosensitive channel protein; PFAM: large-conductance mechanosensitive channel; KEGG: ppd:Ppro_1689 large conductance mechanosensitive channel protein YP_003398531.1 KEGG: fnu:FN0054 tyrosyl-tRNA synthetase; TIGRFAM: tyrosyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_003398532.1 PFAM: AMP-dependent synthetase and ligase; KEGG: hmo:HM1_0197 long-chain-fatty-acid-CoA ligase YP_003398533.1 KEGG: fma:FMG_1388 hypothetical protein YP_003398534.1 KEGG: shi:Shel_19270 histidine kinase YP_003398535.1 PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: shi:Shel_19260 response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain YP_003398536.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: oan:Oant_2761 inosine/uridine-preferring nucleoside hydrolase YP_003398537.1 PFAM: 5'-Nucleotidase domain protein; metallophosphoesterase; KEGG: swo:Swol_1594 5'-nucleotidase/2' 3'-cyclic phosphodiesterase and related esterases-like protein YP_003398539.1 KEGG: lsp:Bsph_3109 hypothetical protein YP_003398540.1 KEGG: bha:BH1806 hypothetical protein YP_003398541.1 PFAM: protein of unknown function DUF477; KEGG: bha:BH1807 hypothetical protein YP_003398543.1 KEGG: cce:Ccel_2393 S-layer domain protein YP_003398546.1 PFAM: protein of unknown function DUF322; KEGG: tpd:Teth39_1096 hypothetical protein YP_003398547.1 KEGG: sth:STH1851 hypothetical protein YP_003398548.1 PFAM: Protein of unknown function DUF2273; KEGG: cce:Ccel_1906 hypothetical protein YP_003398549.1 TIGRFAM: transcription antitermination factor NusB; PFAM: NusB/RsmB/TIM44; KEGG: cth:Cthe_0834 NusB antitermination factor YP_003398550.1 PFAM: peptidase M22 glycoprotease; KEGG: bbe:BBR47_23360 peptidase M22 family protein YP_003398551.1 KEGG: sth:STH1846 exodeoxyribonuclease VII large subunit; TIGRFAM: exodeoxyribonuclease VII, large subunit; PFAM: Exonuclease VII, large subunit-like; nucleic acid binding OB-fold tRNA/helicase-type YP_003398552.1 TIGRFAM: exodeoxyribonuclease VII, small subunit; PFAM: Exonuclease VII small subunit; KEGG: dsa:Desal_0738 exodeoxyribonuclease VII, small subunit YP_003398553.1 PFAM: Polyprenyl synthetase; KEGG: dae:Dtox_2586 polyprenyl synthetase YP_003398554.1 TIGRFAM: deoxyxylulose-5-phosphate synthase; PFAM: Transketolase central region; Transketolase domain protein; KEGG: drm:Dred_1078 deoxyxylulose-5-phosphate synthase YP_003398555.1 KEGG: drm:Dred_1079 hemolysin A; TIGRFAM: hemolysin A; PFAM: RNA-binding S4 domain protein; ribosomal RNA methyltransferase RrmJ/FtsJ; SMART: RNA-binding S4 domain protein YP_003398556.1 PFAM: ATP-NAD/AcoX kinase; KEGG: mta:Moth_1509 NAD(+) kinase YP_003398557.1 TIGRFAM: arginine repressor; PFAM: arginine repressor; KEGG: dhd:Dhaf_3484 arginine repressor, ArgR YP_003398558.1 TIGRFAM: DNA repair protein RecN; PFAM: SMC domain protein; KEGG: cce:Ccel_1896 DNA repair protein RecN YP_003398559.1 PFAM: NUDIX hydrolase; KEGG: bbe:BBR47_23760 ADP-ribose pyrophosphatase YP_003398560.1 PFAM: Stage V sporulation protein S; KEGG: dae:Dtox_3098 stage V sporulation protein S YP_003398561.1 TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; PFAM: NMT1/THI5 like domain protein; KEGG: cco:CCC13826_1743 nitrogenase cofactor biosynthesis protein NifB YP_003398562.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cai:Caci_7381 ABC transporter related YP_003398563.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cco:CCC13826_1746 putative molybdenum ABC transporter, solute-binding protein YP_003398564.1 KEGG: ere:EUBREC_0233 hypothetical protein YP_003398565.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: fnu:FN2105 integral membrane protein YP_003398566.1 KEGG: fnu:FN2104 hypothetical protein YP_003398567.1 PFAM: conserved hypothetical protein; KEGG: fnu:FN2103 RecA protein YP_003398568.1 PFAM: iron-containing alcohol dehydrogenase; KEGG: apv:Apar_0061 iron-containing alcohol dehydrogenase YP_003398569.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: bhy:BHWA1_00467 NorM, Na+-driven multidrug efflux pump YP_003398570.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: ccu:Ccur_09790 cupin domain-containing protein YP_003398571.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: eel:EUBELI_20133 phosphoglucosamine mutase YP_003398572.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: cbl:CLK_0569 metallo-beta- lactamase/flavodoxin domain-containing protein YP_003398573.1 KEGG: npu:Npun_F5977 hypothetical protein YP_003398574.1 TIGRFAM: nucleotidyltransferase substrate binding protein, HI0074 family; PFAM: Nucleotidyltransferase substrate binding protein HI0074; DNA polymerase beta domain protein region; KEGG: gka:GK2711 hypothetical protein YP_003398575.1 PFAM: FeoA family protein; KEGG: cpy:Cphy_3525 FeoA family protein YP_003398576.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; nucleoside recognition domain protein; Ferrous iron transport B domain protein; KEGG: cpy:Cphy_3524 ferrous iron transport protein B YP_003398577.1 PFAM: Heavy metal transport/detoxification protein; KEGG: eel:EUBELI_01434 hypothetical protein YP_003398578.1 TIGRFAM: heavy metal translocating P-type ATPase; cadmium-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: ere:EUBREC_2968 cation-transporting ATPase, P- type YP_003398579.1 PFAM: NADPH-dependent FMN reductase; KEGG: bhy:BHWA1_00383 hypothetical protein YP_003398580.1 PFAM: N-acetylmuramoyl-L-alanine amidase family 2; SMART: N-acetylmuramoyl-L-alanine amidase family 2; KEGG: lpp:lpp0335 hypothetical protein YP_003398581.1 KEGG: aoe:Clos_0923 beta-lactamase YP_003398582.1 KEGG: shi:Shel_25490 protein of unknown function (DUF1858) YP_003398583.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: eel:EUBELI_20433 ATP-binding cassette, subfamily C, bacterial YP_003398584.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: cpy:Cphy_2135 ABC transporter related YP_003398585.1 KEGG: mhu:Mhun_1564 hypothetical protein YP_003398586.1 KEGG: drm:Dred_1619 phenylalanyl-tRNA synthetase, alpha subunit; TIGRFAM: phenylalanyl-tRNA synthetase, alpha subunit; PFAM: phenylalanyl-tRNA synthetase class IIc; aminoacyl tRNA synthetase class II domain protein YP_003398587.1 TIGRFAM: phenylalanyl-tRNA synthetase, beta subunit; KEGG: dae:Dtox_2395 phenylalanyl-tRNA synthetase, beta subunit YP_003398588.1 PFAM: HIRAN; KEGG: ere:EUBREC_3436 hypothetical protein YP_003398589.1 PFAM: Alcohol dehydrogenase zinc-binding domain protein; Alcohol dehydrogenase GroES domain protein; KEGG: apv:Apar_1228 alcohol dehydrogenase zinc- binding domain protein YP_003398590.1 PFAM: cobalamin synthesis protein P47K; KEGG: apv:Apar_1227 cobalamin synthesis protein P47K YP_003398591.1 PFAM: protein of unknown function DUF1294; KEGG: bfs:BF2919 hypothetical protein YP_003398592.1 PFAM: Firmicute transcriptional repressor of class III stress genes; KEGG: gtn:GTNG_0075 transcriptional regulator YP_003398593.1 TIGRFAM: DNA repair protein RadA; SMART: AAA ATPase; KEGG: oih:OB0094 DNA repair protein RadA YP_003398594.1 KEGG: cce:Ccel_2096 alanyl-tRNA synthetase; TIGRFAM: alanyl-tRNA synthetase; PFAM: Alanyl-tRNA synthetase, class IIc-like; Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1 YP_003398595.1 KEGG: ere:EUBREC_1092 hypothetical protein YP_003398596.1 PFAM: protein of unknown function DUF965; KEGG: hmo:HM1_0531 hypothetical protein YP_003398597.1 PFAM: Holliday junction resolvase YqgF; SMART: Resolvase RNase H domain protein fold; KEGG: gwc:GWCH70_2488 Holliday junction resolvase YqgF YP_003398598.1 PFAM: protein of unknown function DUF1292; KEGG: hmo:HM1_0534 hypothetical protein YP_003398599.1 PFAM: aminodeoxychorismate lyase; KEGG: hmo:HM1_0536 conserved hypothetical protein tigr00247 YP_003398600.1 PFAM: peptidase U32; KEGG: cce:Ccel_1474 peptidase U32 YP_003398601.1 PFAM: peptidase M24; creatinase; KEGG: oih:OB1896 Xaa-Pro dipeptidase YP_003398602.1 TIGRFAM: translation elongation factor P; PFAM: Elongation factor P ; Elongation factor KOW domain protein; Elongation factor P/YeiP protein; KEGG: dau:Daud_1005 translation elongation factor P YP_003398603.1 PFAM: Phosphoglycerate mutase; KEGG: mta:Moth_1105 phosphoglycerate mutase YP_003398604.1 PFAM: Uncharacterised conserved protein UCP018688; KEGG: hhe:HH1509 hypothetical protein YP_003398605.1 KEGG: cdf:CD2476 hypothetical protein YP_003398606.1 KEGG: cth:Cthe_0554 phosphoribosylformylglycinamidine synthase; TIGRFAM: phosphoribosylformylglycinamidine synthase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_003398607.1 PFAM: Peptidase M16C associated domain protein; peptidase M16 domain protein; KEGG: cno:NT01CX_1662 zinc-dependent peptidase YP_003398608.1 KEGG: eel:EUBELI_01114 3-deoxy-7-phosphoheptulonate synthase; TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA YP_003398609.1 PFAM: amino acid-binding ACT domain protein; KEGG: mst:Msp_1008 regulatory protein YP_003398611.1 KEGG: shi:Shel_05990 hypothetical protein YP_003398612.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cbe:Cbei_3865 LysR family transcriptional regulator YP_003398613.1 PFAM: NADH:flavin oxidoreductase/NADH oxidase; FAD- dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ckr:CKR_0522 hypothetical protein YP_003398614.1 TIGRFAM: TrpR like protein, YerC/YecD; PFAM: Trp repressor; KEGG: cpr:CPR_2329 TrpR-like protein YerC/YecD YP_003398615.1 KEGG: hmo:HM1_3053 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase 2; PFAM: tRNA synthetase class II (G H P and S) YP_003398616.1 KEGG: drm:Dred_2356 ATP phosphoribosyltransferase; TIGRFAM: ATP phosphoribosyltransferase; PFAM: ATP phosphoribosyltransferase catalytic region YP_003398617.1 KEGG: hmo:HM1_3051 histidinol dehydrogenase; TIGRFAM: histidinol dehydrogenase; PFAM: Histidinol dehydrogenase YP_003398618.1 TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: drm:Dred_2354 histidinol-phosphate aminotransferase YP_003398619.1 PFAM: imidazoleglycerol-phosphate dehydratase; KEGG: sth:STH2836 imidazoleglycerol-phosphate dehydratase YP_003398620.1 TIGRFAM: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit; PFAM: glutamine amidotransferase class-I; KEGG: dau:Daud_1624 imidazole glycerol phosphate synthase, glutamine amidotransferase subunit YP_003398621.1 KEGG: drm:Dred_2351 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4- carboxamide isomerase; TIGRFAM: phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase; PFAM: histidine biosynthesis protein YP_003398622.1 TIGRFAM: imidazoleglycerol phosphate synthase, cyclase subunit; PFAM: histidine biosynthesis protein; KEGG: pth:PTH_2532 imidazole glycerol phosphate synthase subunit HisF YP_003398623.1 PFAM: phosphoribosyl-AMP cyclohydrolase; phosphoribosyl-ATP pyrophosphohydrolase; KEGG: chy:CHY_1091 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein YP_003398624.1 KEGG: sth:STH194 phosphoglucomutase; TIGRFAM: phosphoglucosamine mutase; PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase YP_003398625.1 TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase, isomerizing; PFAM: sugar isomerase (SIS); glutamine amidotransferase class-II; KEGG: drm:Dred_0295 glucosamine--fructose-6- phosphate aminotransferase YP_003398626.1 TIGRFAM: quinolinate synthetase complex, A subunit; PFAM: Quinolinate synthetase A; KEGG: drm:Dred_0163 quinolinate synthetase YP_003398627.1 TIGRFAM: L-aspartate oxidase; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: pth:PTH_0223 aspartate oxidase YP_003398628.1 KEGG: hmo:HM1_0664 nicotinate-nucleotide pyrophosphorylase; TIGRFAM: nicotinate-nucleotide pyrophosphorylase; PFAM: Quinolinate phosphoribosyl transferase YP_003398629.1 PFAM: putative sugar-binding domain protein; KEGG: tte:TTE1763 transcriptional regulator YP_003398630.1 KEGG: dae:Dtox_3937 glyceraldehyde-3-phosphate dehydrogenase, type I; TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase, type I; PFAM: glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain; glyceraldehyde 3-phosphate dehydrogenase, catalytic domain YP_003398631.1 TIGRFAM: triosephosphate isomerase; PFAM: phosphoglycerate kinase; triosephosphate isomerase; KEGG: ate:Athe_1405 triosephosphate isomerase YP_003398632.1 TIGRFAM: phosphoglycerate mutase, 2,3- bisphosphoglycerate-independent; PFAM: BPG-independent PGAM domain protein; metalloenzyme domain protein; KEGG: cpr:CPR_1298 phosphoglyceromutase YP_003398633.1 KEGG: tte:TTE1759 phosphopyruvate hydratase; TIGRFAM: enolase; PFAM: Enolase-like YP_003398634.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: eel:EUBELI_01807 beta-phosphoglucomutase YP_003398635.1 PFAM: RelA/SpoT domain protein; KEGG: lga:LGAS_0709 ppGpp synthetase/hydrolase catalytic subunit YP_003398636.1 PFAM: response regulator receiver; transcriptional regulator domain protein; SMART: response regulator receiver; KEGG: lac:LBA1431 two-component response regulator YP_003398637.1 PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: histidine kinase A domain protein; ATP- binding region ATPase domain protein; KEGG: spk:MGAS9429_Spy0736 two-component system histidine kinase YP_003398638.1 PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: dze:Dd1591_2702 oxidoreductase domain protein YP_003398639.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: apv:Apar_0511 addiction module antitoxin, RelB/DinJ family YP_003398640.1 PFAM: YjcQ; KEGG: ljo:LJ1435 Lj928 prophage major head protein YP_003398641.1 KEGG: bhy:BHWA1_02022 hydrolase of the alpha/beta superfamily YP_003398642.1 KEGG: apj:APJL_0917 hypothetical protein YP_003398643.1 PFAM: major facilitator superfamily MFS_1; KEGG: pjd:Pjdr2_3695 major facilitator superfamily MFS_1 YP_003398644.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: asu:Asuc_1533 antibiotic biosynthesis monooxygenase YP_003398646.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: cdf:CD2842 nitrilase (carbon-nitrogen hydrolase) YP_003398647.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cpy:Cphy_2156 LysR family transcriptional regulator YP_003398648.1 PFAM: regulatory protein TetR; KEGG: cac:CA_P0127 TetR family transcriptional regulator YP_003398650.1 PFAM: NADPH-dependent FMN reductase; KEGG: gbm:Gbem_0784 NADPH-dependent FMN reductase YP_003398651.1 PFAM: Antibiotic biosynthesis monooxygenase; KEGG: asu:Asuc_1533 antibiotic biosynthesis monooxygenase YP_003398652.1 PFAM: formylmethionine deformylase; KEGG: ppe:PEPE_1676 peptide deformylase YP_003398653.1 PFAM: regulatory protein TetR; KEGG: shi:Shel_22630 transcriptional regulator YP_003398654.1 PFAM: DSBA oxidoreductase; KEGG: shi:Shel_22650 predicted dithiol-disulfide isomerase involved in polyketide biosynthesis YP_003398655.1 KEGG: shi:Shel_22660 Zn-dependent hydrolase, glyoxylase YP_003398656.1 KEGG: cdf:CD3636 hypothetical protein YP_003398657.1 KEGG: dal:Dalk_0511 hypothetical protein YP_003398658.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cdf:CD3639 LysR family transcriptional regulator YP_003398659.1 TIGRFAM: preprotein translocase, SecG subunit; PFAM: Preprotein translocase SecG subunit; KEGG: swo:Swol_0277 preprotein translocase subunit SecG YP_003398660.1 KEGG: rpt:Rpal_5127 alpha/beta hydrolase fold YP_003398661.1 PFAM: thioesterase superfamily protein; KEGG: pth:PTH_2715 hypothetical protein YP_003398662.1 KEGG: bcx:BCA_5240 ribonuclease R; TIGRFAM: ribonuclease R; VacB and RNase II family 3'-5' exoribonuclease; PFAM: ribonuclease II; Ribonuclease B OB region domain; RNA binding S1 domain protein; SMART: Cold shock protein YP_003398663.1 TIGRFAM: SsrA-binding protein; PFAM: SmpB protein; KEGG: cbf:CLI_0299 SsrA-binding protein YP_003398664.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: fnu:FN0487 D-lactate dehydrogenase YP_003398665.1 PFAM: protein of unknown function DUF344; KEGG: cyt:cce_2971 putative polyphosphate kinase 2 YP_003398666.1 PFAM: protein of unknown function DUF152; KEGG: drm:Dred_0706 hypothetical protein YP_003398667.1 PFAM: alanine racemase domain protein; KEGG: mta:Moth_0858 hypothetical protein YP_003398668.1 PFAM: protein of unknown function DUF552; KEGG: dsy:DSY2887 hypothetical protein YP_003398669.1 KEGG: cyh:Cyan8802_1715 pyrroline-5-carboxylate reductase; TIGRFAM: pyrroline-5-carboxylate reductase; PFAM: NADP oxidoreductase coenzyme F420-dependent YP_003398670.1 PFAM: RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: nth:Nther_1318 RNA-binding S4 domain protein YP_003398671.1 PFAM: Phosphoglycerate mutase; KEGG: pjd:Pjdr2_4563 phosphoglycerate mutase YP_003398672.1 PFAM: Electron transfer flavoprotein alpha/beta- subunit; KEGG: tye:THEYE_A1636 electron transfer flavoprotein beta-subunit YP_003398673.1 PFAM: Electron transfer flavoprotein alpha/beta- subunit ; Electron transfer flavoprotein alpha subunit; KEGG: bbe:BBR47_17300 electron transfer flavoprotein alpha-subunit YP_003398674.1 KEGG: drm:Dred_1965 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, epsilon subunit; PFAM: Exonuclease RNase T and DNA polymerase III; SMART: Exonuclease YP_003398676.1 KEGG: pth:PTH_1956 threonyl-tRNA synthetase; TIGRFAM: threonyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Threonyl/alanyl tRNA synthetase SAD; TGS domain protein; Anticodon-binding domain protein YP_003398677.1 TIGRFAM: diaminopimelate dehydrogenase; KEGG: cpy:Cphy_2659 diaminopimelate dehydrogenase YP_003398678.1 PFAM: lipolytic protein G-D-S-L family; KEGG: sus:Acid_3990 GDSL family lipase YP_003398679.1 PFAM: sulfatase; KEGG: cha:CHAB381_1777 sulfatase domain-containing protein YP_003398680.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cbf:CLI_3352 rubredoxin/rubrerythrin YP_003398681.1 KEGG: dhd:Dhaf_0640 ATP-dependent endonuclease of the OLD family-like protein YP_003398682.1 PFAM: Auxin Efflux Carrier; KEGG: cdf:CD3169 putative transporter YP_003398683.1 PFAM: regulatory protein TetR; KEGG: hha:Hhal_0130 TetR family transcriptional regulator YP_003398684.1 KEGG: csc:Csac_1189 fructose-1,6-bisphosphate aldolase, class II; TIGRFAM: fructose-1,6-bisphosphate aldolase, class II; ketose-bisphosphate aldolase; PFAM: ketose-bisphosphate aldolase class-II YP_003398685.1 TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; KEGG: eat:EAT1b_2755 pseudouridine synthase, RluA family YP_003398686.1 TIGRFAM: CrcB protein; PFAM: Camphor resistance CrcB protein; KEGG: lba:Lebu_0217 CrcB protein YP_003398688.1 PFAM: PP-loop domain protein; KEGG: ckr:CKR_2212 hypothetical protein YP_003398689.1 PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase; KEGG: amt:Amet_0480 1-(5-phosphoribosyl)-5-amino-4- imidazole-carboxylate (AIR) carboxylase YP_003398690.1 PFAM: protein of unknown function DUF111; KEGG: amt:Amet_0481 hypothetical protein YP_003398691.1 PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: cpy:Cphy_0681 cobalamin (vitamin B12) biosynthesis CbiM protein YP_003398692.1 PFAM: cobalt transport protein; KEGG: hmo:HM1_3001 cobalt abc transporter, permease protein CbiQ YP_003398693.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cce:Ccel_1184 cobalt ABC transporter, ATPase subunit YP_003398694.1 PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen; KEGG: hor:Hore_18200 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen YP_003398695.1 PFAM: cytochrome c biogenesis protein transmembrane region; KEGG: bja:blr3508 cytochrome c-type biogenesis protein YP_003398696.1 PFAM: sodium:dicarboxylate symporter; KEGG: apr:Apre_0397 sodium:dicarboxylate symporter YP_003398697.1 KEGG: afl:Aflv_1506 SOS-response transcriptional repressor (RecA-mediated autopeptidase); TIGRFAM: LexA repressor; PFAM: LexA DNA-binding domain protein; Peptidase S24/S26A/S26B, conserved region YP_003398698.1 PFAM: Aluminium resistance family protein; KEGG: bcl:ABC2180 aluminum resistance protein YP_003398699.1 TIGRFAM: GTP-binding proten HflX; PFAM: GTP-binding protein HSR1-related; KEGG: cth:Cthe_2081 small GTP-binding protein YP_003398700.1 PFAM: DEAD/DEAH box helicase domain protein; helicase domain protein; DbpA RNA-binding domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dsy:DSY1954 hypothetical protein YP_003398701.1 TIGRFAM: competence/damage-inducible protein CinA; PFAM: CinA domain protein; molybdopterin binding domain; KEGG: dth:DICTH_1766 competence-damage inducible protein YP_003398702.1 KEGG: drm:Dred_1926 MiaB-like tRNA modifying enzyme YliG; TIGRFAM: MiaB-like tRNA modifying enzyme YliG; RNA modification enzyme, MiaB family; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003398703.1 KEGG: sth:STH1584 hypothetical protein YP_003398704.1 PFAM: cell divisionFtsK/SpoIIIE; DNA translocase ftsK gamma; SMART: AAA ATPase; KEGG: cac:CAC1812 sporulation protein SpoIIIE, DNA segregation ATPase YP_003398705.1 PFAM: RNA-metabolising metallo-beta-lactamase; KEGG: dae:Dtox_3163 beta-lactamase domain protein YP_003398706.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; PFAM: NMT1/THI5 like domain protein; KEGG: drm:Dred_3213 TRAP transporter solute receptor TAXI family protein YP_003398707.1 PFAM: NAD-dependent epimerase/dehydratase; KEGG: csc:Csac_1597 NAD-dependent epimerase/dehydratase YP_003398708.1 PFAM: conserved hypothetical protein; KEGG: maq:Maqu_3008 hypothetical protein YP_003398709.1 TIGRFAM: ribonuclease HIII; PFAM: ribonuclease HII/HIII; KEGG: mpl:Mpal_0022 ribonuclease HIII YP_003398710.1 PFAM: protein of unknown function DUF322; KEGG: cth:Cthe_2070 hypothetical protein YP_003398711.1 PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; KEGG: dae:Dtox_4086 PHP domain protein YP_003398713.1 KEGG: dda:Dd703_0812 hypothetical protein YP_003398714.1 PFAM: major facilitator superfamily MFS_1; KEGG: lmc:Lm4b_01258 antibiotic resistance protein YP_003398715.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: cac:CAC0768 LysR family transcriptional regulator YP_003398716.1 KEGG: bpd:BURPS668_1882 TadE family protein YP_003398717.1 PFAM: peptidase A24A prepilin type IV; KEGG: pth:PTH_1144 type II secretory pathway, prepilin signal peptidase PulO and related peptidases YP_003398718.1 TIGRFAM: PTS system, fructose subfamily, IIC subunit; PTS system, fructose subfamily, IIA subunit; PTS system, fructose-specific, IIB subunnit; PFAM: phosphotransferase system PTS fructose- specific IIB subunit; phosphoenolpyruvate-dependent sugar phosphotransferase system EIIA 2; phosphotransferase system EIIC; KEGG: cbt:CLH_2044 heat-responsive suppressor HrsA YP_003398719.1 TIGRFAM: 1-phosphofructokinase; PFAM: PfkB domain protein; KEGG: ere:EUBREC_0018 fructose-1-phosphate kinase YP_003398720.1 PFAM: YdjC family protein; KEGG: mag:amb3100 hypothetical protein YP_003398721.1 KEGG: cpy:Cphy_0344 membrane protein-like protein YP_003398722.1 PFAM: Lactate/malate dehydrogenase; KEGG: blt:Balat_0321 L-lactate dehydrogenase YP_003398723.1 PFAM: peptidase M18 aminopeptidase I; KEGG: ere:EUBREC_2386 aspartyl aminopeptidase YP_003398724.1 PFAM: amino acid permease-associated region; KEGG: cbt:CLH_0986 amino acid permease family protein YP_003398725.1 PFAM: peptidase C1B bleomycin hydrolase; KEGG: lpj:JDM1_0540 cysteine aminopeptidase YP_003398726.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: cdf:CD2829 hypothetical protein YP_003398727.1 KEGG: amt:Amet_2923 hypothetical protein YP_003398728.1 PFAM: Uncharacterised conserved protein UCP037246; KEGG: ere:EUBREC_1717 hypothetical protein YP_003398729.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: lbu:LBUL_1203 ABC-type multidrug transport system, ATPase and permease component YP_003398730.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: cth:Cthe_0396 ABC transporter related protein YP_003398731.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cac:CAC2394 LysR family transcriptional regulator YP_003398732.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: apv:Apar_1162 protein tyrosine phosphatase YP_003398733.1 KEGG: bcy:Bcer98_3736 putative transposase YP_003398734.1 PFAM: Integrase catalytic region; KEGG: afl:Aflv_2103 transposase YP_003398735.1 KEGG: cbe:Cbei_2571 hypothetical protein YP_003398736.1 KEGG: bbe:BBR47_58550 hypothetical protein YP_003398737.1 PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein; KEGG: mgm:Mmc1_2003 Sel1 domain-containing protein YP_003398738.1 KEGG: rca:Rcas_4101 hypothetical protein YP_003398739.1 KEGG: cce:Ccel_2968 hypothetical protein YP_003398741.1 PFAM: integrase family protein; Tn916 integrase domain protein DNA binding; KEGG: cdf:CD1091 integrase YP_003398742.1 PFAM: Excisionase from transposon Tn916; KEGG: sss:SSUSC84_0824 excisionase YP_003398744.1 PFAM: heat shock protein DnaJ domain protein; SMART: heat shock protein DnaJ domain protein; KEGG: mei:Msip34_0959 heat shock protein DnaJ domain protein YP_003398747.1 KEGG: gvi:gll2583 hypothetical protein YP_003398748.1 KEGG: gvi:gll2583 hypothetical protein YP_003398750.1 PFAM: sodium/sulphate symporter; KEGG: lcb:LCABL_04300 sodium-dependent dicarboxylate transporter SdcS (Na(+)/dicarboxylate symporter) YP_003398751.1 PFAM: HI0933 family protein; KEGG: aac:Aaci_1630 FAD dependent oxidoreductase YP_003398752.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pth:PTH_1546 transcriptional regulator YP_003398753.1 PFAM: alpha/beta hydrolase fold; KEGG: rme:Rmet_4241 alpha/beta hydrolase fold YP_003398754.1 TIGRFAM: citrate/H+ symporter, CitMHS family; PFAM: Citrate transporter; KEGG: asu:Asuc_1303 citrate transporter YP_003398755.1 PFAM: alpha/beta hydrolase fold; KEGG: ctc:CTC02183 putative arylesterase, non-heme chloride peroxidase YP_003398756.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cac:CAC1046 LysR family transcriptional regulator YP_003398757.1 PFAM: protein of unknown function DUF891; KEGG: ere:EUBREC_3011 hypothetical protein YP_003398758.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ere:EUBREC_3010 hypothetical protein YP_003398759.1 KEGG: hmo:HM1_2958 phage terminase, large subunit, putative YP_003398760.1 KEGG: amt:Amet_4035 hypothetical protein YP_003398761.1 KEGG: ckr:CKR_3419 hypothetical protein YP_003398762.1 KEGG: det:DET1090 hypothetical protein YP_003398763.1 KEGG: det:DET1091 virulence-related protein YP_003398764.1 PFAM: DNA methylase N-4/N-6 domain protein; ParB domain protein nuclease; SMART: ParB domain protein nuclease; KEGG: hmo:HM1_2946 DNA methylase YP_003398765.1 KEGG: tex:Teth514_1242 hypothetical protein YP_003398766.1 PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: det:DET1094 HNH endonuclease domain- containing protein YP_003398768.1 KEGG: det:DET1095 hypothetical protein YP_003398769.1 PFAM: SNF2-related protein; SMART: DEAD-like helicase; KEGG: det:DET1096 SNF2 domain-containing protein YP_003398770.1 PFAM: VRR-NUC domain protein; KEGG: det:DET1097 hypothetical protein YP_003398772.1 TIGRFAM: phage/plasmid primase, P4 family; PFAM: primase P4; KEGG: sak:SAK_0730 prophage LambdaSa04, DNA primase YP_003398773.1 KEGG: sak:SAK_0730 prophage LambdaSa04, DNA primase YP_003398774.1 KEGG: hmo:HM1_2897 hypothetical protein YP_003398775.1 KEGG: amt:Amet_4051 hypothetical protein YP_003398777.1 PFAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase; KEGG: det:DET1100 family A DNA-dependent DNA polymerase YP_003398778.1 KEGG: det:DET1101 hypothetical protein YP_003398779.1 KEGG: det:DET1102 hypothetical protein YP_003398780.1 KEGG: hmo:HM1_2933 hypothetical protein YP_003398782.1 PFAM: Sigma-70 region 4 type 2; KEGG: hmo:HM1_2931 hypothetical protein YP_003398784.1 PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: dps:DP1551 hypothetical protein YP_003398785.1 PFAM: conserved hypothetical protein; KEGG: oih:OB2837 hypothetical protein YP_003398786.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: oih:OB2838 hypothetical protein YP_003398787.1 KEGG: oih:OB2839 hypothetical protein YP_003398788.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: cce:Ccel_1263 GntR domain protein YP_003398789.1 KEGG: cpy:Cphy_1511 hypothetical protein YP_003398790.1 KEGG: cya:CYA_1293 putative type III restriction- modification system, res subunit YP_003398791.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: rci:LRC82 putative type III restriction- modification system, methylation subunit YP_003398792.1 PFAM: NUDIX hydrolase; Protein of unknown function DUF2075; KEGG: lba:Lebu_0123 hypothetical protein YP_003398793.1 KEGG: cbe:Cbei_2571 hypothetical protein YP_003398794.1 KEGG: ckl:CKL_1965 hypothetical protein YP_003398796.1 KEGG: bbe:BBR47_58550 hypothetical protein YP_003398797.1 KEGG: sru:SRU_0755 hypothetical protein YP_003398798.1 KEGG: lsl:LSL_1389 hypothetical protein YP_003398799.1 TIGRFAM: death-on-curing family protein; PFAM: filamentation induced by cAMP protein Fic; KEGG: ctc:CTC01933 death on curing protein YP_003398800.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cbb:CLD_A0041 hypothetical protein YP_003398802.1 KEGG: eca:ECA1669A hypothetical protein YP_003398803.1 KEGG: bbe:BBR47_58550 hypothetical protein YP_003398804.1 PFAM: integrase family protein; Tn916 integrase domain protein DNA binding; KEGG: sss:SSUSC84_0823 integrase YP_003398805.1 PFAM: Excisionase from transposon Tn916; KEGG: cdf:CD0356 excisionase YP_003398806.1 KEGG: pfl:PFL_0369 M24/M37 family peptidase YP_003398807.1 PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin; KEGG: tte:TTE2424 N-acetylmuramoyl-L-alanine amidase YP_003398810.1 KEGG: amt:Amet_4051 hypothetical protein YP_003398813.1 PFAM: DNA-directed DNA polymerase; SMART: DNA-directed DNA polymerase; KEGG: det:DET1100 family A DNA-dependent DNA polymerase YP_003398815.1 KEGG: hmo:HM1_2935 hypothetical protein YP_003398816.1 KEGG: det:DET1102 hypothetical protein YP_003398817.1 KEGG: bca:BCE_0374 rRNA biogenesis protein rrp5, putative YP_003398819.1 PFAM: Sigma-70 region 4 type 2; KEGG: hmo:HM1_2931 hypothetical protein YP_003398820.1 KEGG: tex:Teth514_1229 hypothetical protein YP_003398821.1 KEGG: tex:Teth514_1228 hypothetical protein YP_003398824.1 KEGG: sss:SSUSC84_1113 hypothetical protein YP_003398825.1 KEGG: apv:Apar_1241 hypothetical protein YP_003398829.1 KEGG: hypothetical protein YP_003398830.1 TIGRFAM: MIP family channel protein; PFAM: major intrinsic protein; KEGG: shi:Shel_12070 permease, glycerol uptake facilitator YP_003398831.1 PFAM: S-layer domain protein; YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: pmu:PM0714 Hsf YP_003398832.1 PFAM: Resolvase domain; Recombinase; KEGG: spa:M6_Spy1125 site-specific recombinase YP_003398836.1 KEGG: bcy:Bcer98_3736 putative transposase YP_003398837.1 PFAM: Integrase catalytic region; KEGG: afl:Aflv_2103 transposase YP_003398838.1 PFAM: protein of unknown function DUF891; KEGG: ere:EUBREC_3676 hypothetical protein YP_003398839.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: ere:EUBREC_3677 hypothetical protein YP_003398840.1 PFAM: filamentation induced by cAMP protein Fic; KEGG: dae:Dtox_3993 filamentation induced by cAMP protein Fic YP_003398841.1 KEGG: bpu:BPUM_3130 thioredoxin YP_003398842.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: shi:Shel_02260 Fe-S oxidoreductase YP_003398843.1 TIGRFAM: transposase, IS605 OrfB family; PFAM: putative transposase IS891/IS1136/IS1341 family; transposase IS605 OrfB; KEGG: gwc:GWCH70_3000 transposase, IS605 OrfB family YP_003398844.1 PFAM: transposase IS200-family protein; KEGG: gwc:GWCH70_3001 transposase IS200-family protein YP_003398845.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: ccv:CCV52592_2058 ArsR family transcriptional regulator YP_003398846.1 PFAM: Methyltransferase type 11; KEGG: ckr:CKR_3382 hypothetical protein YP_003398848.1 PFAM: integrase family protein; KEGG: hso:HS_0555 phage integrase YP_003398849.1 KEGG: bav:BAV0385 restriction-modification system, endonuclease subunit; TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: type III restriction protein res subunit; protein of unknown function DUF450; SMART: DEAD-like helicase YP_003398850.1 PFAM: restriction modification system DNA specificity domain; KEGG: chu:CHU_3351 type I site-specific deoxyribonuclease S subunit YP_003398851.1 PFAM: restriction modification system DNA specificity domain; KEGG: lrl:LC705_00838 type I restriction modification system DNA specificity domain, enzyme S protein (HsdS) YP_003398852.1 TIGRFAM: type I restriction-modification system, M subunit; PFAM: N-6 DNA methylase; KEGG: amu:Amuc_1915 type I restriction-modification system, M subunit YP_003398853.1 SMART: Transcription regulator, AsnC-type; KEGG: gfo:GFO_0486 transcription regulator AsnC YP_003398854.1 KEGG: tau:Tola_3060 hypothetical protein YP_003398855.1 PFAM: ABC transporter related; NIL domain; SMART: AAA ATPase; KEGG: drm:Dred_2652 ABC transporter related YP_003398856.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rru:Rru_A0789 binding-protein dependent transport system inner membrane protein YP_003398857.1 PFAM: protein of unknown function DUF192; KEGG: rba:RB13078 hypothetical protein YP_003398858.1 PFAM: Type II secretion system F domain; KEGG: drm:Dred_2118 type II secretion system protein YP_003398859.1 PFAM: type II secretion system protein E; KEGG: tro:trd_1011 CpaF YP_003398860.1 PFAM: TadE family protein; KEGG: pca:Pcar_1749 Flp pilus assembly protein TadG YP_003398862.1 PFAM: Type II secretion system F domain; KEGG: drm:Dred_2117 type II secretion system protein YP_003398863.1 PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: nth:Nther_2317 response regulator receiver protein YP_003398864.1 KEGG: nth:Nther_2317 response regulator receiver protein YP_003398865.1 PFAM: type II and III secretion system protein; transport-associated; KEGG: bte:BTH_I2542 type II/III secretion system protein YP_003398866.1 TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: nmu:Nmul_A2361 Flp pilus assembly CpaB YP_003398867.1 PFAM: amine oxidase; KEGG: bad:BAD_1455 hypothetical protein YP_003398868.1 KEGG: ele:Elen_0890 hypothetical protein YP_003398869.1 KEGG: mta:Moth_1068 dihydrodipicolinate synthase; TIGRFAM: dihydrodipicolinate synthase; PFAM: dihydrodipicolinate synthetase YP_003398870.1 KEGG: tex:Teth514_1634 aspartate kinase I; TIGRFAM: aspartate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003398871.1 KEGG: pth:PTH_1286 aspartate-semialdehyde dehydrogenase; TIGRFAM: aspartate-semialdehyde dehydrogenase; PFAM: Semialdehyde dehydrogenase dimerisation region; Semialdehyde dehydrogenase NAD - binding YP_003398872.1 KEGG: dae:Dtox_3169 dihydrodipicolinate reductase; TIGRFAM: dihydrodipicolinate reductase; PFAM: dihydrodipicolinate reductase YP_003398874.1 PFAM: deoxyUTP pyrophosphatase; KEGG: lla:L181168 deoxyuridine 5'-triphosphate nucleotidohydrolase YP_003398876.1 PFAM: thiamine monophosphate synthase; KEGG: ere:EUBREC_0222 thiamine-phosphate pyrophosphorylase, putative YP_003398877.1 PFAM: Desulfoferrodoxin ferrous iron-binding region; KEGG: cpy:Cphy_1924 desulfoferrodoxin ferrous iron- binding region YP_003398879.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; glutaredoxin; KEGG: shi:Shel_18290 anaerobic ribonucleoside- triphosphate reductase YP_003398880.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; PFAM: Radical SAM domain protein; KEGG: shi:Shel_18280 anaerobic ribonucleoside- triphosphate reductase activating protein YP_003398881.1 TIGRFAM: sodium/glutamate symporter; PFAM: sodium/glutamate symporter; KEGG: fnu:FN0205 sodium/glutamate symport carrier protein YP_003398882.1 PFAM: peptidase M48 Ste24p; KEGG: app:CAP2UW1_0044 peptidase M48 Ste24p YP_003398883.1 TIGRFAM: tyrosine recombinase XerD; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: sth:STH1821 recombinase YP_003398884.1 TIGRFAM: RNA chaperone Hfq; PFAM: Like-Sm ribonucleoprotein core; KEGG: bsu:BSU17340 RNA-binding protein Hfq YP_003398885.1 KEGG: bbe:BBR47_33690 tRNA delta(2)- isopentenylpyrophosphate transferase; TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase; PFAM: tRNA isopentenyltransferase YP_003398886.1 PFAM: protein of unknown function DUF548; KEGG: dau:Daud_0555 hypothetical protein YP_003398887.1 TIGRFAM: DNA mismatch repair protein MutL; PFAM: MutL dimerisation; DNA mismatch repair protein domain protein; ATP-binding region ATPase domain protein; KEGG: pjd:Pjdr2_2607 DNA mismatch repair protein MutL YP_003398888.1 KEGG: dae:Dtox_2125 DNA mismatch repair protein MutS; TIGRFAM: DNA mismatch repair protein MutS; PFAM: MutS III domain protein; DNA mismatch repair protein MutS domain protein; MutS II domain protein; MutS IV domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein YP_003398889.1 KEGG: cth:Cthe_0783 RNA modification protein; TIGRFAM: RNA modification enzyme, MiaB family; tRNA- i(6)A37 thiotransferase enzyme MiaB; PFAM: Protein of unknown function UPF0004 ; Radical SAM domain protein; deoxyribonuclease/rho motif-related TRAM; SMART: Elongator protein 3/MiaB/NifB YP_003398890.1 PFAM: type III restriction protein res subunit; KEGG: bcb:BCB4264_A0973 type III restriction enzyme, res subunit family YP_003398891.1 PFAM: DNA methylase N-4/N-6 domain protein; KEGG: ere:EUBREC_1322 putative type III modification methyltransferase YP_003398892.1 TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; KEGG: rxy:Rxyl_1667 ECF subfamily RNA polymerase sigma-24 factor YP_003398893.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: bha:BH3144 primosomal protein DnaI YP_003398896.1 KEGG: aoe:Clos_2527 hypothetical protein YP_003398897.1 KEGG: mmr:Mmar10_2551 hypothetical protein YP_003398898.1 PFAM: glycosyl transferase family 2; KEGG: bbe:BBR47_20870 hypothetical protein YP_003398899.1 KEGG: tpd:Teth39_0883 hypothetical protein YP_003398900.1 KEGG: trq:TRQ2_0904 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase; TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropter idinepyrophosphokinase; PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK YP_003398901.1 KEGG: cbb:CLD_3744 dihydropteroate synthase; TIGRFAM: dihydropteroate synthase; PFAM: dihydropteroate synthase DHPS YP_003398902.1 PFAM: protein of unknown function DUF198; KEGG: csc:Csac_0211 putative GTP cyclohydrolase YP_003398903.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: cbi:CLJ_B0869 putative 6-pyruvoyl tetrahydropterin synthase YP_003398904.1 PFAM: tRNA/rRNA methyltransferase (SpoU); KEGG: dae:Dtox_0805 RNA methyltransferase, TrmH family, group 2 YP_003398905.1 KEGG: drm:Dred_1228 cell wall hydrolase/autolysin YP_003398906.1 PFAM: Na+/solute symporter; KEGG: cbo:CBO0367 sodium:solute symporter family protein YP_003398907.1 KEGG: nth:Nther_2337 beta-lactamase domain protein YP_003398908.1 TIGRFAM: homoserine kinase; PFAM: GHMP kinase; GHMP kinase domain protein; KEGG: hmo:HM1_1938 homoserine kinase YP_003398909.1 PFAM: homoserine dehydrogenase; homoserine dehydrogenase NAD-binding; amino acid-binding ACT domain protein; KEGG: hmo:HM1_1936 homoserine dehydrogenase YP_003398910.1 PFAM: amino acid-binding ACT domain protein; KEGG: tte:TTE2621 hypothetical protein YP_003398911.1 PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; KEGG: stp:Strop_1266 glycerol-3-phosphate dehydrogenase (NAD(P)(+)) YP_003398912.1 PFAM: protein of unknown function DUF205; KEGG: hau:Haur_4413 hypothetical protein YP_003398913.1 TIGRFAM: ribosome-associated GTPase EngA; small GTP- binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: pjd:Pjdr2_2390 small GTP-binding protein YP_003398914.1 TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 2; KEGG: hmo:HM1_1981 isopentenyl-diphosphate delta- isomerase, type 2 YP_003398915.1 TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase; PFAM: LytB protein; RNA binding S1 domain protein; KEGG: dsy:DSY2255 4-hydroxy-3-methylbut-2-enyl diphosphate reductase/S1 RNA-binding domain protein YP_003398916.1 KEGG: oih:OB1801 1-acyl-sn-glycerol-3-phosphate acetyltransferase; TIGRFAM: 1-acyl-sn-glycerol-3-phosphate acyltransferase; PFAM: phospholipid/glycerol acyltransferase; SMART: phospholipid/glycerol acyltransferase YP_003398917.1 TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; shikimate kinase; KEGG: esi:Exig_1808 cytidylate kinase YP_003398918.1 PFAM: HI0933 family protein; KEGG: cth:Cthe_0708 FAD dependent oxidoreductase YP_003398919.1 PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; KEGG: pjd:Pjdr2_2363 pseudouridine synthase YP_003398920.1 TIGRFAM: segregation and condensation protein B; PFAM: chromosome segregation and condensation protein ScpB; KEGG: hmo:HM1_1886 segregation and condensation protein B YP_003398921.1 PFAM: chromosome segregation and condensation protein ScpA; KEGG: tye:THEYE_A0360 segregation and condensation protein A YP_003398922.1 PFAM: peptidase M50; KEGG: mta:Moth_1362 peptidase M50 YP_003398923.1 TIGRFAM: GTP-sensing transcriptional pleiotropic repressor CodY; PFAM: GTP-sensing transcriptional pleiotropic repressor CodY; Helix-turn-helix CodY domain protein; KEGG: hor:Hore_07580 GTP-sensing transcriptional pleiotropic repressor CodY YP_003398924.1 TIGRFAM: tyrosine recombinase XerC; PFAM: integrase family protein; integrase domain protein SAM domain protein; KEGG: bbe:BBR47_34900 probable tyrosine recombinase YP_003398925.1 KEGG: pjd:Pjdr2_3464 gid protein; TIGRFAM: gid protein; PFAM: glucose-inhibited division protein A YP_003398926.1 KEGG: drm:Dred_1984 DNA topoisomerase I; TIGRFAM: DNA topoisomerase I; PFAM: DNA topoisomerase type IA central domain protein; TOPRIM domain protein; DNA topoisomerase type IA zn finger domain protein; SMART: DNA topoisomerase I DNA-binding; DNA topoisomerase I ATP-binding; Toprim sub domain protein YP_003398927.1 TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: tro:trd_1601 probable smf protein YP_003398928.1 TIGRFAM: small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; KEGG: cth:Cthe_0042 small GTP-binding protein YP_003398929.1 TIGRFAM: cation diffusion facilitator family transporter; PFAM: cation efflux protein; KEGG: fnu:FN0948 cobalt-zinc-cadmium resistance protein CzcD YP_003398931.1 PFAM: peptidylprolyl isomerase FKBP-type; KEGG: eel:EUBELI_20470 peptidylprolyl isomerase YP_003398935.1 PFAM: tetracycline resistance leader peptide; KEGG: cbt:CLH_2455 hypothetical protein YP_003398936.1 PFAM: SNF2-related protein; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: dvl:Dvul_2939 SNF2-related protein YP_003398937.1 KEGG: dvl:Dvul_2938 hypothetical protein YP_003398938.1 PFAM: OmpA/MotB domain protein; KEGG: dvl:Dvul_2937 OmpA/MotB domain-containing protein YP_003398939.1 KEGG: pap:PSPA7_6042 methyl-accepting chemotaxis protein YP_003398940.1 PFAM: protein of unknown function DUF805 YP_003398941.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: drm:Dred_1505 hypothetical protein YP_003398942.1 PFAM: conserved hypothetical protein; KEGG: bhy:BHWA1_01194 hypothetical protein YP_003398943.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cpy:Cphy_3276 MATE efflux family protein YP_003398944.1 KEGG: eel:EUBELI_01335 tryptophanyl-tRNA synthetase; TIGRFAM: tryptophanyl-tRNA synthetase; PFAM: aminoacyl-tRNA synthetase class Ib YP_003398945.1 PFAM: sodium:dicarboxylate symporter; KEGG: dhd:Dhaf_2655 sodium:dicarboxylate symporter YP_003398946.1 PFAM: Bile acid:sodium symporter; KEGG: bhy:BHWA1_00132 transporter YP_003398947.1 KEGG: ssa:SSA_0888 magnesium/cobalt transporter, putative; TIGRFAM: magnesium transporter; PFAM: MgtE intracellular region; hypothetical protein; MgtE integral membrane region; SMART: hypothetical protein YP_003398949.1 PFAM: methyltransferase small; SMART: PUA domain containing protein; KEGG: cth:Cthe_1519 SAM-dependent methyltransferase YP_003398951.1 PFAM: IMP dehydrogenase/GMP reductase; hypothetical protein; KEGG: cdf:CD2335 inosine 5-monophosphate dehydrogenase YP_003398952.1 KEGG: gsu:GSU0610 phosphoribosylamine--glycine ligase; TIGRFAM: phosphoribosylamine/glycine ligase; PFAM: Phosphoribosylglycinamide synthetase, ATP- grasp (A) domain; Phosphoribosylglycinamide synthetase, N- domain; Phosphoribosylglycinamide synthetase, C-domain YP_003398953.1 PFAM: MGS domain protein; AICARFT/IMPCHase bienzyme formylation region; KEGG: hmo:HM1_3106 bifunctional purine biosynthesis protein YP_003398954.1 TIGRFAM: phosphoribosylglycinamide formyltransferase; PFAM: formyl transferase domain protein; KEGG: drm:Dred_2363 phosphoribosylglycinamide formyltransferase YP_003398955.1 KEGG: dau:Daud_1631 phosphoribosylformylglycinamidine cyclo-ligase; TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase; PFAM: AIR synthase related protein domain protein; AIR synthase related protein YP_003398956.1 TIGRFAM: amidophosphoribosyltransferase; PFAM: glutamine amidotransferase class-II; phosphoribosyltransferase; KEGG: hmo:HM1_3109 amidophosphoribosyltransferase YP_003398957.1 KEGG: tsi:TSIB_1870 phosphoribosylaminoimidazole carboxylase catalytic subunit; TIGRFAM: phosphoribosylaminoimidazole carboxylase, catalytic subunit; PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase YP_003398958.1 KEGG: rca:Rcas_0223 FHA domain-containing protein YP_003398959.1 KEGG: bcl:ABC2675 recombination and DNA strand exchange inhibitor protein; TIGRFAM: MutS2 family protein; PFAM: Smr protein/MutS2; DNA mismatch repair protein MutS domain protein; SMART: DNA mismatch repair protein MutS domain protein; MutS III domain protein; Smr protein/MutS2 YP_003398960.1 PFAM: peptidase U32; KEGG: pth:PTH_1944 collagenase and related proteases YP_003398961.1 PFAM: EAL domain protein; SMART: EAL domain protein; KEGG: lbu:LBUL_0889 C-di-GMP-specific phosphodiesterase YP_003398963.1 PFAM: protein of unknown function UPF0150; KEGG: dsy:DSY3841 hypothetical protein YP_003398964.1 PFAM: YcfA family protein; KEGG: rxy:Rxyl_0587 YcfA-like protein YP_003398969.1 KEGG: tpd:Teth39_1070 Tfp pilus assembly protein PilE-like protein YP_003398970.1 PFAM: Type II secretion system F domain; KEGG: dar:Daro_0638 type II secretion system protein YP_003398971.1 PFAM: ATP-cone domain protein; KEGG: lcb:LCABL_19250 transcriptional regulator NrdR YP_003398972.1 TIGRFAM: cell division protein FtsZ; PFAM: Tubulin/FtsZ GTPase; Tubulin/FtsZ, 2-layer sandwich domain; KEGG: dhd:Dhaf_4057 cell division protein FtsZ YP_003398973.1 PFAM: protein of unknown function DUF1290; KEGG: pth:PTH_1852 hypothetical protein YP_003398974.1 PFAM: protein of unknown function DUF881; KEGG: tpd:Teth39_1999 hypothetical protein YP_003398975.1 PFAM: Polypeptide-transport-associated domain protein FtsQ-type; KEGG: pth:PTH_1855 cell division septal protein YP_003398976.1 KEGG: esi:Exig_1814 D-alanine--D-alanine ligase; TIGRFAM: D-alanine/D-alanine ligase; PFAM: D-alanine--D-alanine ligase domain protein YP_003398977.1 TIGRFAM: UDP-N-acetylmuramate/alanine ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: pth:PTH_1860 UDP-N-acetylmuramate--L-alanine ligase YP_003398978.1 KEGG: drm:Dred_0675 undecaprenyldiphospho- muramoylpentapeptide beta-N-acetylglucosaminyltransferase; TIGRFAM:UDP-N-acetylglucosamine--N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol N- acetylglucosamine transferase; PFAM: glycosyltransferase 28 domain; glycosyl transferase family 28 YP_003398979.1 TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: tex:Teth514_2011 UDP-N-acetylmuramoylalanine-- D-glutamate ligase YP_003398980.1 TIGRFAM:phospho-N-acetylmuramoyl-pentapeptide- transf erase; PFAM: glycosyl transferase, family 4, conserved region; Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site; KEGG: gka:GK1117 phospho-N-acetylmuramoyl- pentapeptide-transferase YP_003398981.1 TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2, 6-di aminopimelate/D-alanyl-D-alanylligase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: chy:CHY_2073 UDP-N-acetylmuramoyl-tripeptide-- D-alanyl-D-alanine ligase YP_003398982.1 TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase; PFAM: Mur ligase middle domain protein; cytoplasmic peptidoglycan synthetase domain protein; KEGG: mta:Moth_0838 UDP-N-acetylmuramoylalanyl-D- glutamate--2,6-diaminopimelate ligase YP_003398983.1 PFAM: Septum formation initiator; KEGG: tex:Teth514_2016 cell division protein FtsL YP_003398984.1 TIGRFAM: S-adenosyl-methyltransferase MraW; PFAM: methyltransferase; KEGG: drm:Dred_0667 S-adenosyl-methyltransferase MraW YP_003398985.1 TIGRFAM: MraZ protein; PFAM: MraZ domain; KEGG: hmo:HM1_2050 cell division mraz protein YP_003398986.1 PFAM: Domain of unknown function DUF1858; KEGG: mta:Moth_2496 hypothetical protein YP_003398987.1 TIGRFAM: orotate phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: drm:Dred_1689 orotate phosphoribosyltransferase YP_003398988.1 KEGG: drm:Dred_1687 orotidine 5'-phosphate decarboxylase; TIGRFAM: orotidine 5'-phosphate decarboxylase; PFAM: Orotidine 5'-phosphate decarboxylase YP_003398989.1 TIGRFAM: dihydroorotate dehydrogenase family protein; PFAM: dihydroorotate oxidase; KEGG: hmo:HM1_2112 dihydroorotate dehydrogenase, catalytic subunit YP_003398990.1 PFAM: Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: cth:Cthe_0948 dihydroorotate oxidase B, electron transfer subunit YP_003398991.1 TIGRFAM: carbamoyl-phosphate synthase, large subunit; PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; Carbamoyl-phosphate synthetase large chain domain protein; Carbamoyl-phosphate synthetase large chain oligomerisation; MGS domain protein; KEGG: hmo:HM1_2110 carbamoyl-phosphate synthase, large subunit YP_003398992.1 TIGRFAM: carbamoyl-phosphate synthase, small subunit; PFAM: Carbamoyl-phosphate synthase small chain; glutamine amidotransferase class-I; KEGG: amt:Amet_4211 carbamoyl phosphate synthase small subunit YP_003398993.1 TIGRFAM: dihydroorotase, multifunctional complex type; PFAM: amidohydrolase; KEGG: dae:Dtox_2354 dihydroorotase, multifunctional complex type YP_003398994.1 KEGG: drm:Dred_1681 aspartate carbamoyltransferase; TIGRFAM: aspartate carbamoyltransferase; PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain; aspartate/ornithine carbamoyltransferase Asp/Orn-binding region YP_003398995.1 KEGG: wol:WD0296 hypothetical protein YP_003398996.1 PFAM: type III restriction protein res subunit; helicase domain protein; SMART: DEAD-like helicase ; helicase domain protein; KEGG: pjd:Pjdr2_0293 type III restriction protein res subunit YP_003398997.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: sth:STH1690 putative amino acid amidohydrolase YP_003398998.1 KEGG: mta:Moth_2335 hypothetical protein YP_003399000.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: ere:EUBREC_2155 hypothetical protein YP_003399001.1 PFAM: OmpA/MotB domain protein; porin opacity type; KEGG: vpa:VP0764 outer membrane protein OmpA YP_003399003.1 TIGRFAM: glutamate synthase (NADPH), homotetrameric; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cth:Cthe_0372 sulfide dehydrogenase (flavoprotein) subunit SudA YP_003399004.1 PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: pab:PAB1737 ferredoxin-NADP(+) reductase subunit alpha YP_003399005.1 PFAM: amidohydrolase; KEGG: chy:CHY_1438 amidohydrolase family protein YP_003399006.1 PFAM: purine or other phosphorylase family 1; KEGG: sth:STH1696 5'-methylthioadenosine phosphorylase YP_003399007.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: esi:Exig_2410 HAD family hydrolase YP_003399008.1 PFAM: UvrD/REP helicase; KEGG: ank:AnaeK_1341 UvrD/REP helicase YP_003399009.1 KEGG: ctc:CTC00686 ATP-dependent nuclease subunit B YP_003399011.1 PFAM: Citrate transporter; KEGG: sth:STH127 sodium-dependent transporter YP_003399012.1 PFAM: PP-loop domain protein; SMART: Rhodanese domain protein; KEGG: ere:EUBREC_1362 putative ATPase of the PP- loop superfamily implicated in cell cycle control YP_003399013.1 KEGG: dsy:DSY0293 hypothetical protein YP_003399015.1 TIGRFAM: sugar fermentation stimulation protein; PFAM: sugar fermentation stimulation protein; KEGG: dhd:Dhaf_1036 sugar fermentation stimulation protein YP_003399016.1 TIGRFAM: 2-isopropylmalate synthase; PFAM: pyruvate carboxyltransferase; LeuA allosteric (dimerisation) domain; KEGG: cac:CAC0273 2-isopropylmalate synthase YP_003399017.1 KEGG: bfr:BF2666 5-aminoimidazole-4-carboxamide ribonucleotide transformylase; PFAM: AICARFT/IMPCHase bienzyme formylation region; SMART: AICARFT/IMPCHase bienzyme formylation region YP_003399018.1 PFAM: Radical SAM domain protein; KEGG: cce:Ccel_0110 radical SAM domain protein YP_003399019.1 KEGG: rsa:RSal33209_1872 hypothetical protein YP_003399020.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: aoe:Clos_0855 hypothetical protein YP_003399021.1 KEGG: stm:STM3354 L(+)-tartrate dehydratase subunit beta; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, beta subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region YP_003399022.1 KEGG: set:SEN3188 tartrate dehydratase subunit alpha; TIGRFAM: hydro-lyase, Fe-S type, tartrate/fumarate subfamily, alpha subunit; PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region YP_003399023.1 PFAM: Citrate transporter; KEGG: kpu:KP1_4956 putative cation transporter YP_003399024.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: set:SEN3190 LysR-family transcriptional regulator YP_003399025.1 TIGRFAM: GTP-binding protein LepA; small GTP- binding protein; PFAM: GTP-binding protein LepA domain protein; protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain protein; KEGG: chy:CHY_0410 GTP-binding protein LepA YP_003399026.1 TIGRFAM: ribosomal protein S20; PFAM: ribosomal protein S20; KEGG: bld:BLi02747 30S ribosomal protein S20 YP_003399027.1 TIGRFAM: riboflavin biosynthesis protein RibF; PFAM: Riboflavin kinase; FAD synthetase; KEGG: ami:Amir_5827 riboflavin biosynthesis protein RibF YP_003399028.1 TIGRFAM: tRNA pseudouridine synthase B; PFAM: pseudouridylate synthase TruB domain protein; KEGG: cth:Cthe_0988 tRNA pseudouridine synthase B YP_003399029.1 PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: sth:STH1524 exopolyphosphatase-related protein YP_003399030.1 TIGRFAM: ribosome-binding factor A; PFAM: ribosome-binding factor A; KEGG: tex:Teth514_1644 ribosome-binding factor A YP_003399031.1 TIGRFAM: translation initiation factor IF-2; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; translation initiation factor IF-2 domain protein; elongation factor Tu domain 2 protein; KEGG: aac:Aaci_1435 translation initiation factor IF-2 YP_003399032.1 PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: pjd:Pjdr2_3408 ribosomal protein L7Ae/L30e/S12e/Gadd45 YP_003399033.1 PFAM: protein of unknown function DUF448; KEGG: hmo:HM1_2311 hypothetical protein YP_003399034.1 KEGG: hmo:HM1_2310 transcription termination factor NusA; TIGRFAM: transcription termination factor NusA; PFAM: NusA domain protein; RNA binding S1 domain protein; K Homology, type 1, subgroup; SMART: KH domain protein YP_003399035.1 PFAM: protein of unknown function DUF150; KEGG: eat:EAT1b_2952 protein of unknown function DUF150 YP_003399036.1 TIGRFAM: penicillin-binding protein, 1A family; PFAM: glycosyl transferase family 51; penicillin- binding protein transpeptidase; KEGG: dau:Daud_1369 1A family penicillin-binding protein YP_003399037.1 PFAM: pyruvate carboxyltransferase; Conserved carboxylase region; KEGG: tex:Teth514_1582 oxaloacetate decarboxylase YP_003399038.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: eel:EUBELI_20467 hypothetical protein YP_003399039.1 KEGG: dge:Dgeo_2274 hypothetical protein YP_003399040.1 PFAM: homocysteine S-methyltransferase; KEGG: bld:BLi00266 homocysteine methyltransferase YP_003399041.1 KEGG: bcy:Bcer98_3736 putative transposase YP_003399042.1 PFAM: Integrase catalytic region; KEGG: afl:Aflv_2103 transposase YP_003399043.1 TIGRFAM: amino acid carrier protein; PFAM: sodium:alanine symporter; KEGG: tex:Teth514_0910 amino acid carrier protein YP_003399044.1 KEGG: gau:GAU_3178 putative N-carbamoyl-L-amino acid amidohydrolase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003399045.1 KEGG: mta:Moth_1045 DNA polymerase III, alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: DNA polymerase III alpha subunit; PHP domain protein; SMART: phosphoesterase PHP domain protein YP_003399046.1 PFAM: MgtC/SapB transporter; KEGG: hor:Hore_07790 MgtC/SapB transporter YP_003399047.1 KEGG: drm:Dred_1967 prolyl-tRNA synthetase; TIGRFAM: prolyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); YbaK/prolyl-tRNA synthetase associated region; Anticodon- binding domain protein YP_003399048.1 KEGG: gme:Gmet_1353 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate synthase; PFAM: IspG family protein YP_003399049.1 KEGG: mta:Moth_1042 peptidase RseP; TIGRFAM: membrane-associated zinc metalloprotease; PFAM: peptidase M50; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003399050.1 KEGG: pcu:pc0260 1-deoxy-D-xylulose 5-phosphate reductoisomerase; TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein YP_003399051.1 PFAM: phosphatidate cytidylyltransferase; KEGG: amt:Amet_2683 phosphatidate cytidylyltransferase YP_003399052.1 KEGG: dau:Daud_0610 undecaprenyl diphosphate synthase; TIGRFAM: undecaprenyl diphosphate synthase; PFAM: Di-trans-poly-cis-decaprenylcistransferase YP_003399053.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tpd:Teth39_1414 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003399054.1 TIGRFAM: ribosome recycling factor; PFAM: ribosome recycling factor; KEGG: dae:Dtox_3210 ribosome recycling factor YP_003399055.1 KEGG: chy:CHY_1785 uridylate kinase; TIGRFAM: uridylate kinase; PFAM: aspartate/glutamate/uridylate kinase YP_003399056.1 TIGRFAM: translation elongation factor Ts; PFAM: Translation elongation factor EFTs/EF1B dimerisation; ubiquitin-associated- domain-containing protein; KEGG: oih:OB1587 elongation factor Ts YP_003399057.1 TIGRFAM: ribosomal protein S2; PFAM: ribosomal protein S2; KEGG: drm:Dred_1978 ribosomal protein S2 YP_003399058.1 PFAM: Threonyl/alanyl tRNA synthetase SAD; phosphoesterase DHHA1; KEGG: chl:Chy400_3264 threonyl/alanyl tRNA synthetase SAD YP_003399059.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dol:Dole_1501 radical SAM domain-containing protein YP_003399060.1 TIGRFAM: branched-chain amino acid aminotransferase; PFAM: aminotransferase class IV; KEGG: ere:EUBREC_2380 branched-chain-amino-acid transaminase (IlvE) YP_003399061.1 KEGG: gtn:GTNG_0884 methyl-accepting chemotaxis protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; Cache domain protein; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein YP_003399062.1 KEGG: mpt:Mpe_A0214 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; SMART: GGDEF domain containing protein; histidine kinase HAMP region domain protein YP_003399063.1 KEGG: hor:Hore_10320 ribonuclease III; TIGRFAM: ribonuclease III; PFAM: ribonuclease III; double-stranded RNA binding domain protein; SMART: ribonuclease III; double-stranded RNA binding domain protein YP_003399064.1 TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2; PFAM: Beta-ketoacyl synthase; KEGG: pth:PTH_1739 3-oxoacyl-(acyl-carrier-protein) synthase YP_003399065.1 PFAM: 2-nitropropane dioxygenase NPD; KEGG: hmo:HM1_2167 2-nitropropane dioxygenase YP_003399066.1 TIGRFAM: acyl carrier protein; PFAM: phosphopantetheine-binding; KEGG: drm:Dred_2071 acyl carrier protein YP_003399067.1 TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KEGG: gwc:GWCH70_1081 3-oxoacyl-(acyl-carrier- protein) reductase YP_003399068.1 TIGRFAM: malonyl CoA-acyl carrier protein transacylase; PFAM: Acyl transferase; KEGG: drm:Dred_2073 malonyl CoA-acyl carrier protein transacylase YP_003399069.1 KEGG: tte:TTE1475 3-oxoacyl-(acyl carrier protein) synthase III; TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III; PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III YP_003399070.1 TIGRFAM: fatty acid/phospholipid synthesis protein PlsX; PFAM: fatty acid synthesis plsX protein; KEGG: pth:PTH_1746 putative glycerol-3-phosphate acyltransferase PlsX YP_003399071.1 PFAM: regulatory protein DeoR; KEGG: tte:TTE1477 fatty acid biosynthesis transcriptional regulator YP_003399072.1 KEGG: bhy:BHWA1_01968 transaldolase; TIGRFAM: transaldolase; PFAM: Transaldolase YP_003399073.1 TIGRFAM: ribosomal protein L32; PFAM: ribosomal L32p protein; KEGG: cno:NT01CX_2222 50S ribosomal protein L32 YP_003399074.1 PFAM: protein of unknown function DUF177; KEGG: aac:Aaci_1339 protein of unknown function DUF177 YP_003399075.1 TIGRFAM: acetate kinase; PFAM: acetate and butyrate kinase; KEGG: aoe:Clos_1447 acetate kinase YP_003399076.1 PFAM: protein of unknown function DUF795; KEGG: pjd:Pjdr2_3498 protein of unknown function DUF795 YP_003399077.1 KEGG: dsy:DSY2671 hypothetical protein YP_003399078.1 KEGG: ate:Athe_1227 pantetheine-phosphate adenylyltransferase; TIGRFAM: pantetheine-phosphate adenylyltransferase; cytidyltransferase-related domain protein; PFAM: cytidylyltransferase YP_003399079.1 TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: cdf:CD2559 hypothetical protein YP_003399080.1 KEGG: tte:TTE2409 hypothetical protein YP_003399081.1 KEGG: sha:SH0243 hypothetical protein YP_003399082.1 PFAM: Sel1 domain protein repeat-containing protein; KEGG: nmu:Nmul_A0104 Sel1 repeat-containing protein YP_003399083.1 KEGG: cyn:Cyan7425_3973 KWG leptospira repeat protein YP_003399084.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cpy:Cphy_1553 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein YP_003399085.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; KEGG: gtn:GTNG_3237 aminobenzoyl-glutamate utilization protein B YP_003399086.1 PFAM: Hemerythrin HHE cation binding domain protein; KEGG: cpy:Cphy_1509 hemerythrin HHE cation binding domain-containing protein YP_003399087.1 KEGG: cpy:Cphy_1508 hypothetical protein YP_003399088.1 PFAM: Domain of unknown function DUF1858; KEGG: hypothetical protein YP_003399089.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: ere:EUBREC_0234 biotin synthase YP_003399091.1 PFAM: protein of unknown function DUF567; KEGG: cpy:Cphy_1292 hypothetical protein YP_003399092.1 KEGG: sat:SYN_02177 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase; TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase; PFAM: DNA/pantothenate metabolism flavoprotein domain protein; flavoprotein YP_003399093.1 TIGRFAM: DNA-directed RNA polymerase, omega subunit; PFAM: RNA polymerase Rpb6; KEGG: cth:Cthe_1314 DNA-directed RNA polymerase, omega subunit YP_003399094.1 KEGG: tex:Teth514_1761 guanylate kinase; TIGRFAM: guanylate kinase; PFAM: guanylate kinase; SMART: guanylate kinase/L-type calcium channel region YP_003399095.1 PFAM: protein of unknown function DUF370; KEGG: cac:CAC1717 hypothetical protein YP_003399096.1 PFAM: YicC domain protein; domain of unknown function DUF1732; KEGG: pth:PTH_1797 hypothetical protein YP_003399098.1 PFAM: Fibronectin-binding A domain protein; protein of unknown function DUF814; KEGG: tpd:Teth39_1330 fibronectin-binding A domain- containing protein YP_003399099.1 KEGG: mta:Moth_2259 dihydroxyacid dehydratase; TIGRFAM: dihydroxy-acid dehydratase; PFAM: dihydroxy-acid and 6-phosphogluconate dehydratase YP_003399100.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: cbk:CLL_A1589 Na+-driven multidrug efflux pump YP_003399101.1 TIGRFAM: lysyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; t-RNA-binding domain protein; KEGG: fma:FMG_0987 lysyl-tRNA synthetase class II YP_003399102.1 TIGRFAM: transcription elongation factor GreA; PFAM: transcription elongation factor GreA/GreB domain protein; KEGG: hmo:HM1_0644 transcription elongation factor GreA YP_003399103.1 PFAM: Citrate transporter; KEGG: ere:EUBREC_3385 hypothetical protein YP_003399104.1 PFAM: Redoxin domain protein; KEGG: gwc:GWCH70_2710 redoxin domain protein YP_003399105.1 TIGRFAM: chaperonin GroEL; PFAM: chaperonin Cpn60/TCP-1; KEGG: hmo:HM1_1422 chaperonin GroEL YP_003399106.1 PFAM: Chaperonin Cpn10; KEGG: lwe:lwe2090 co-chaperonin GroES YP_003399107.1 PFAM: cysteine-rich small domain; KEGG: dsa:Desal_0255 cysteine-rich small domain protein YP_003399108.1 KEGG: sth:STH3249 dimethyladenosine transferase; TIGRFAM: dimethyladenosine transferase; PFAM: ribosomal RNA adenine methylase transferase; SMART: Ribosomal RNA adenine methylase transferase- like YP_003399109.1 KEGG: aoe:Clos_2658 primase/topoisomerase like protein; TIGRFAM: primase/topoisomerase like protein; PFAM: TOPRIM domain protein; SMART: Toprim sub domain protein YP_003399110.1 PFAM: 3D domain protein; G5 domain protein; protein of unknown function DUF348; KEGG: tpd:Teth39_2135 3D domain-containing protein YP_003399111.1 TIGRFAM: hydrolase, TatD family; PFAM: TatD-related deoxyribonuclease; KEGG: pth:PTH_0070 Mg-dependent DNase YP_003399112.1 TIGRFAM: methionyl-tRNA synthetase; methionyl-tRNA synthetase, beta subunit; KEGG: mta:Moth_0048 methionyl-tRNA synthetase YP_003399114.1 KEGG: fps:FP0848 hypothetical protein YP_003399115.1 KEGG: cdf:CD0522 putative signaling protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein YP_003399116.1 PFAM: nitroreductase; KEGG: cac:CAC3314 nitroreductase family protein YP_003399117.1 TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase; PFAM: Nucleotidyl transferase; KEGG: amt:Amet_0375 UTP-glucose-1-phosphate uridylyltransferase YP_003399118.1 KEGG: hmo:HM1_0724 peptidyl-tRNA hydrolase; TIGRFAM: peptidyl-tRNA hydrolase; PFAM: peptidyl-tRNA hydrolase YP_003399119.1 KEGG: chy:CHY_0193 ribose-phosphate pyrophosphokinase; TIGRFAM: ribose-phosphate pyrophosphokinase; PFAM: phosphoribosyltransferase YP_003399120.1 TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase; PFAM: Nucleotidyl transferase; transferase hexapeptide repeat containing protein; KEGG: drm:Dred_0099 UDP-N-acetylglucosamine pyrophosphorylase YP_003399121.1 TIGRFAM: threonine dehydratase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; amino acid-binding ACT domain protein; KEGG: gka:GK1591 threonine dehydratase YP_003399122.1 TIGRFAM: pur operon repressor; PFAM: purine repressor ; phosphoribosyltransferase; KEGG: hor:Hore_21340 purine operon repressor, PurR YP_003399123.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: drm:Dred_0095 GntR family transcriptional regulator YP_003399124.1 KEGG: mta:Moth_0072 4-diphosphocytidyl-2-C-methyl-D- erythritol kinase; TIGRFAM: 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; PFAM: GHMP kinase; GHMP kinase domain protein YP_003399125.1 PFAM: Protein of unknown function DUF2179; protein of unknown function DUF161; KEGG: tpd:Teth39_1269 hypothetical protein YP_003399126.1 TIGRFAM: sodium/glutamate symporter; PFAM: sodium/glutamate symporter; KEGG: cno:NT01CX_2103 sodium/glutamate symporter YP_003399127.1 TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: gtn:GTNG_2449 DNA polymerase III subunit delta YP_003399128.1 TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; ComEC/Rec2-related protein; PFAM: ComEC/Rec2-related protein; KEGG: dae:Dtox_3303 DNA internalization-related competence protein ComEC/Rec2 YP_003399129.1 PFAM: Soluble ligand binding domain; helix-hairpin- helix motif; SMART: Helix-hairpin-helix DNA-binding class 1; KEGG: chy:CHY_0402 competence protein YP_003399130.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: dat:HRM2_09570 NagD YP_003399131.1 PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; ionotropic glutamate receptor; KEGG: mta:Moth_1126 extracellular solute-binding protein YP_003399132.1 PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: eat:EAT1b_1042 diguanylate cyclase and metal dependent phosphohydrolase YP_003399133.1 KEGG: dvl:Dvul_0611 hypothetical protein YP_003399134.1 PFAM: protein of unknown function DUF554; KEGG: lsa:LSA1347 integral membrane protein YP_003399135.1 KEGG: eel:EUBELI_20375 alanine racemase; TIGRFAM: alanine racemase; PFAM: alanine racemase domain protein YP_003399136.1 PFAM: Inosine/uridine-preferring nucleoside hydrolase; KEGG: sen:SACE_3233 inosine-uridine preferring nucleoside hydrolase YP_003399137.1 KEGG: afo:Afer_0600 membrane-flanked domain protein YP_003399138.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: cth:Cthe_3148 ABC transporter related protein YP_003399139.1 PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase; KEGG: cth:Cthe_3147 ABC transporter related protein YP_003399140.1 KEGG: tgr:Tgr7_0129 competence protein F YP_003399141.1 KEGG: dde:Dde_2725 helicase RecD/TraA; TIGRFAM: helicase, RecD/TraA family; SMART: AAA ATPase; Helix-hairpin-helix DNA-binding class 1 YP_003399142.1 PFAM: S-adenosylmethionine decarboxylase related; KEGG: drm:Dred_2200 S-adenosylmethionine decarboxylase proenzyme YP_003399143.1 PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ote:Oter_4195 hydrolase YP_003399144.1 PFAM: pentapeptide repeat protein; KEGG: npu:Npun_R2559 pentapeptide repeat-containing protein YP_003399145.1 KEGG: lba:Lebu_0327 phosphate acetyltransferase; TIGRFAM: phosphate acetyltransferase; PFAM: phosphate acetyl/butaryl transferase YP_003399146.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: fnu:FN0550 mannose-1-phosphate guanylyl transferase (GDP) YP_003399147.1 PFAM: peptidase M18 aminopeptidase I; KEGG: amt:Amet_3140 putative aminopeptidase 1 YP_003399148.1 PFAM: glycoside hydrolase family 3 domain protein; KEGG: gtn:GTNG_3239 putative anhydromuramoyl- peptide exo-beta-N-acetylglucosaminidase YP_003399149.1 PFAM: Enoyl-CoA hydratase/isomerase; KEGG: chy:CHY_1601 3-hydroxybutyryl-CoA dehydratase YP_003399150.1 PFAM: 3-hydroxyacyl-CoA dehydrogenase NAD-binding; 3-hydroxyacyl-CoA dehydrogenase domain protein; KEGG: tte:TTE0548 3-hydroxybutyryl-CoA dehydrogenase YP_003399151.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: chy:CHY_1350 butyryl-CoA dehydrogenase YP_003399152.1 TIGRFAM: acetyl-CoA acetyltransferase; KEGG: ctc:CTC00312 acetyl-CoA acetyltransferase YP_003399153.1 KEGG: afu:AF1024 reverse gyrase YP_003399155.1 KEGG: cno:NT01CX_1394 endonuclease III; TIGRFAM: endonuclease III; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; SMART: HhH-GPD family protein; iron-sulfur cluster loop YP_003399156.1 PFAM: protein of unknown function DUF711; KEGG: drm:Dred_1672 hypothetical protein YP_003399157.1 PFAM: amino acid-binding ACT domain protein; KEGG: drm:Dred_1671 hypothetical protein YP_003399159.1 KEGG: eel:EUBELI_00451 phosphoribosylaminoimidazole- succinocarboxamide synthase; TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase; PFAM: SAICAR synthetase YP_003399160.1 PFAM: purine or other phosphorylase family 1; KEGG: bwe:BcerKBAB4_3050 purine phosphorylase family 1 YP_003399161.1 PFAM: protein of unknown function DUF541; KEGG: mxa:MXAN_7203 putative 28 kDa outer membrane protein YP_003399162.1 PFAM: protein of unknown function UPF0074; KEGG: ele:Elen_0624 transcriptional regulator, BadM/Rrf2 family YP_003399163.1 TIGRFAM: thioredoxin reductase; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ele:Elen_1892 thioredoxin reductase YP_003399164.1 PFAM: Thioredoxin domain; KEGG: bhe:BH00260 thioredoxin YP_003399165.1 PFAM: Na+/H+ antiporter NhaC-like; KEGG: fnu:FN0624 Na+/H+ antiporter NhaC YP_003399166.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: hor:Hore_17670 outer membrane chaperone Skp (OmpH) YP_003399167.1 PFAM: Heavy metal transport/detoxification protein; KEGG: mbu:Mbur_0613 heavy metal transport/detoxification protein YP_003399168.1 PFAM: protein of unknown function DUF156; KEGG: cpy:Cphy_3876 hypothetical protein YP_003399169.1 TIGRFAM: isoleucyl-tRNA synthetase; KEGG: cce:Ccel_1855 isoleucyl-tRNA synthetase YP_003399170.1 PFAM: tRNA/rRNA methyltransferase (SpoU); RNA 2-O ribose methyltransferase substrate binding; KEGG: cth:Cthe_1222 RNA methyltransferase YP_003399171.1 PFAM: TrkA-N domain protein; TrkA-C domain protein; KEGG: cno:NT01CX_1765 trk system potassium uptake protein TrkA YP_003399172.1 KEGG: gka:GK0212 trk family K(+) transporter; TIGRFAM: potassium uptake protein, TrkH family; PFAM: cation transporter YP_003399173.1 PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: ere:EUBREC_1724 L-lactate dehydrogenase YP_003399174.1 KEGG: tte:TTE0252 Na+-transporting methylmalonyl- CoA/oxaloacetate decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl- CoA/oxaloacetate decarboxylase beta subunit YP_003399176.1 PFAM: tetracycline resistance leader peptide; KEGG: cbt:CLH_2455 hypothetical protein YP_003399177.1 KEGG: msu:MS2255 hypothetical protein YP_003399178.1 KEGG: dhd:Dhaf_3767 signal recognition particle- docking protein FtsY; TIGRFAM: signal recognition particle-docking protein FtsY; PFAM: GTP-binding signal recognition particle SRP54 G- domain; GTP-binding signal recognition particle SRP54 helical bundle; SMART: AAA ATPase YP_003399179.1 TIGRFAM: chromosome segregation protein SMC; PFAM: SMC domain protein; SMCs flexible hinge domain protein; KEGG: gka:GK1193 chromosome segregation ATPase (SMC) YP_003399180.1 PFAM: phosphoribosyltransferase; KEGG: hor:Hore_09350 uracil phosphoribosyltransferase YP_003399181.1 KEGG: drm:Dred_1673 RluA family pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein YP_003399182.1 TIGRFAM: lipoprotein signal peptidase; PFAM: peptidase A8 signal peptidase II; KEGG: nth:Nther_1323 lipoprotein signal peptidase YP_003399183.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IA, variant 3; HAD-superfamily hydrolase, subfamily IA, variant 1; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: ere:EUBREC_0355 putative phosphatase YP_003399185.1 TIGRFAM: aspartyl-tRNA synthetase; PFAM: tRNA synthetase class II (D K and N); nucleic acid binding OB-fold tRNA/helicase-type; GAD domain protein; KEGG: pth:PTH_1049 aspartyl-tRNA synthetase YP_003399186.1 KEGG: drm:Dred_0756 histidyl-tRNA synthetase; TIGRFAM: histidyl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Anticodon-binding domain protein YP_003399187.1 PFAM: protein of unknown function UPF0118; KEGG: pth:PTH_1059 permease YP_003399188.1 KEGG: drm:Dred_0735 beta-lactamase domain- containing protein YP_003399189.1 TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase; PFAM: D-tyrosyl-tRNA(Tyr) deacylase; KEGG: tna:CTN_1854 D-tyrosyl-tRNA(Tyr) deacylase YP_003399190.1 KEGG: mta:Moth_1680 (p)ppGpp synthetase I (GTP pyrophosphokinase), SpoT/RelA; TIGRFAM: RelA/SpoT family protein; PFAM: RelA/SpoT domain protein; metal-dependent phosphohydrolase HD sub domain; TGS domain protein; amino acid-binding ACT domain protein; SMART: metal-dependent phosphohydrolase HD region YP_003399191.1 TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: hor:Hore_12210 single-stranded-DNA-specific exonuclease RecJ YP_003399192.1 KEGG: tpd:Teth39_1436 hypothetical protein YP_003399193.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: bad:BAD_0967 hypothetical protein YP_003399194.1 TIGRFAM: protein-export membrane protein SecF; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: dau:Daud_1355 preprotein translocase subunit SecF YP_003399195.1 TIGRFAM: protein-export membrane protein SecD; protein-export membrane protein, SecD/SecF family; PFAM: SecD/SecF/SecDF export membrane protein; KEGG: pth:PTH_1035 preprotein translocase subunit SecD YP_003399196.1 TIGRFAM: 5-formyltetrahydrofolate cyclo-ligase; PFAM: 5-formyltetrahydrofolate cyclo-ligase; KEGG: cno:NT01CX_1657 5-formyltetrahydrofolate cyclo-ligase family protein YP_003399197.1 TIGRFAM: preprotein translocase, YajC subunit; PFAM: YajC family protein; KEGG: sth:STH1168 hypothetical protein YP_003399198.1 KEGG: cdf:CD2802 queuine tRNA-ribosyltransferase; TIGRFAM: queuine tRNA-ribosyltransferase; tRNA- guanine transglycosylase, various specificities; PFAM: Queuine/other tRNA-ribosyltransferase YP_003399199.1 TIGRFAM:S-adenosylmethionine/tRNA- ribosyltransferase -isomerase; PFAM: Queuosine biosynthesis protein; KEGG: tte:TTE1182 S-adenosylmethionine:tRNA ribosyltransferase-isomerase YP_003399200.1 TIGRFAM: SpoIID/LytB domain protein; PFAM: Stage II sporulation D domain protein; KEGG: amr:AM1_5748 SpoIID/LytB domain-containing protein YP_003399201.1 KEGG: hmo:HM1_1829 Holliday junction DNA helicase RuvB; TIGRFAM: Holliday junction DNA helicase RuvB; PFAM: AAA ATPase central domain protein; Holliday junction DNA helicase RuvB domain; SMART: AAA ATPase YP_003399202.1 KEGG: cth:Cthe_0181 Holliday junction DNA helicase subunit RuvA; TIGRFAM: Holliday junction DNA helicase RuvA; PFAM: DNA recombination protein RuvA domain I; helix-hairpin-helix motif; RuvA domain protein; SMART: Helix-hairpin-helix DNA-binding class 1 YP_003399203.1 KEGG: bbe:BBR47_18640 crossover junction endodeoxyribonuclease; TIGRFAM: crossover junction endodeoxyribonuclease RuvC; PFAM: Crossover junction endodeoxyribonuclease RuvC YP_003399204.1 PFAM: protein of unknown function DUF28; KEGG: dae:Dtox_1103 protein of unknown function DUF28 YP_003399205.1 PFAM: hydrogenase large subunit domain protein; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; KEGG: nth:Nther_0884 hydrogenase large subunit domain protein YP_003399206.1 KEGG: cth:Cthe_1381 threonine synthase; TIGRFAM: threonine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit YP_003399207.1 TIGRFAM: NAD+ synthetase; PFAM: NAD synthase; Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: pth:PTH_0918 hypothetical protein YP_003399208.1 PFAM: protein of unknown function DUF988; KEGG: cbe:Cbei_0741 hypothetical protein YP_003399209.1 KEGG: bvu:BVU_2290 hypothetical protein YP_003399210.1 KEGG: eel:EUBELI_20420 biotin synthetase; TIGRFAM: biotin synthase; PFAM: biotin and thiamin synthesis associated; Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB YP_003399211.1 PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: msi:Msm_1733 rubrerythrin YP_003399212.1 KEGG: dau:Daud_0847 copper amine oxidase domain- containing protein YP_003399213.1 KEGG: ctc:CTC02312 hypothetical protein YP_003399214.1 TIGRFAM: lipoprotein, YaeC family; PFAM: NLPA lipoprotein; KEGG: vpa:VP0379 putative ABC transporter substrate binding protein YP_003399215.1 PFAM: Methionine synthase vitamin-B12 independent; KEGG: fma:FMG_1311 hypothetical protein YP_003399216.1 KEGG: ere:EUBREC_0176 hypothetical protein YP_003399217.1 PFAM: VanZ family protein; KEGG: cpe:CPE0070 phosphotransbutyrylase YP_003399219.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cbe:Cbei_2867 LysR family transcriptional regulator YP_003399220.1 PFAM: regulatory protein ArsR; SMART: regulatory protein ArsR; KEGG: blj:BLD_1091 arsenical resistance operon repressor YP_003399221.1 PFAM: Arsenical resistance operon trans-acting repressor ArsD; KEGG: dsy:DSY4151 hypothetical protein YP_003399222.1 KEGG: dhd:Dhaf_1189 arsenite-activated ATPase ArsA; TIGRFAM: arsenite-activated ATPase ArsA; PFAM: Anion-transporting ATPase YP_003399223.1 PFAM: Protein-tyrosine phosphatase, low molecular weight; SMART: Protein-tyrosine phosphatase, low molecular weight; KEGG: eel:EUBELI_01655 arsenate reductase YP_003399224.1 TIGRFAM: arsenical-resistance protein; PFAM: Bile acid:sodium symporter; KEGG: blj:BLD_1095 arsenite efflux pump YP_003399225.1 KEGG: cth:Cthe_1459 hypothetical protein YP_003399226.1 KEGG: vha:VIBHAR_p08196 hypothetical protein YP_003399227.1 PFAM: LytTr DNA-binding region; KEGG: dhd:Dhaf_1994 two component transcriptional regulator, LytTR family YP_003399228.1 KEGG: hmo:HM1_1957 fad dependent oxidoreductase, putative YP_003399229.1 KEGG: ddr:Deide_20680 putative beta-lactamase (penicillinase) YP_003399230.1 PFAM: protein of unknown function DUF45; KEGG: cth:Cthe_0542 hypothetical protein YP_003399231.1 PFAM: protein of unknown function DUF21; hypothetical protein; transporter-associated region; SMART: hypothetical protein; KEGG: afl:Aflv_2310 hemolysin related protein containing CBS domains YP_003399232.1 PFAM: isochorismatase hydrolase; KEGG: dhd:Dhaf_2040 isochorismatase hydrolase YP_003399233.1 PFAM: nitroreductase; KEGG: ckr:CKR_0293 hypothetical protein YP_003399234.1 TIGRFAM: methionine aminopeptidase, type I; PFAM: peptidase M24; KEGG: cbe:Cbei_3615 methionine aminopeptidase, type I YP_003399235.1 PFAM: protein of unknown function DUF368; KEGG: cbk:CLL_A2966 hypothetical protein YP_003399236.1 PFAM: FeoA family protein; KEGG: eel:EUBELI_00572 hypothetical protein YP_003399237.1 PFAM: FeoA family protein; KEGG: dhd:Dhaf_3460 FeoA family protein YP_003399238.1 TIGRFAM: ferrous iron transport protein B; small GTP-binding protein; PFAM: GTP-binding protein HSR1-related; Ferrous iron transport protein B domain protein; nucleoside recognition domain protein; Ferrous iron transport B domain protein; KEGG: cpy:Cphy_1194 ferrous iron transport protein B YP_003399239.1 KEGG: eel:EUBELI_00575 hypothetical protein YP_003399240.1 KEGG: lba:Lebu_1430 hypothetical protein YP_003399242.1 PFAM: Transketolase central region; Transketolase domain protein; KEGG: bth:BT_1403 1-deoxy-D-xylulose-5-phosphate synthase YP_003399243.1 KEGG: pth:PTH_2212 phosphatase YP_003399245.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: msu:MS2158 hypothetical protein YP_003399246.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: lmo:lmo0430 hypothetical protein YP_003399247.1 PFAM: acyl-CoA dehydrogenase domain protein; Electron transfer flavoprotein alpha subunit ; Rubredoxin- type Fe(Cys)4 protein; KEGG: cbi:CLJ_B3073 acyl-CoA dehydrogenase family protein/electron transfer protein YP_003399248.1 PFAM: flavodoxin/nitric oxide synthase; KEGG: bhy:BHWA1_02229 putative flavoprotein YP_003399249.1 PFAM: transposase IS4 family protein; KEGG: dsy:DSY1297 hypothetical protein YP_003399250.1 KEGG: cbi:CLJ_B3594 metalloendopeptidase, glycoprotease family; TIGRFAM: metalloendopeptidase, glycoprotease family; PFAM: peptidase M22 glycoprotease YP_003399251.1 TIGRFAM: ribosomal-protein-alanine acetyltransferase; PFAM: GCN5-related N-acetyltransferase; KEGG: aoe:Clos_2468 ribosomal-protein-alanine acetyltransferase YP_003399252.1 PFAM: peptidase M22 glycoprotease; KEGG: cce:Ccel_0800 peptidase M22 glycoprotease YP_003399253.1 PFAM: protein of unknown function UPF0079; KEGG: cdf:CD0149 putative ATP/GTP hydrolase YP_003399254.1 KEGG: mta:Moth_0633 phosphoenolpyruvate carboxykinase; TIGRFAM: phosphoenolpyruvate carboxykinase (ATP); PFAM: phosphoenolpyruvate carboxykinase (ATP) YP_003399255.1 PFAM: acyl-CoA dehydrogenase domain protein; KEGG: drm:Dred_1490 butyryl-CoA dehydrogenase YP_003399256.1 PFAM: thioesterase superfamily protein; KEGG: snt:SPT_1768 thioesterase family protein YP_003399257.1 PFAM: 3D domain protein; Peptidoglycan-binding domain 1 protein; KEGG: swo:Swol_0756 hypothetical protein YP_003399258.1 PFAM: glutamine synthetase catalytic region; KEGG: cpf:CPF_2894 putative glutamine synthetase YP_003399259.1 KEGG: fnu:FN1583 hypothetical protein YP_003399260.1 PFAM: protein of unknown function DUF819; KEGG: fnu:FN1585 hypothetical protein YP_003399261.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: fnu:FN1586 O-succinylbenzoate-CoA synthase YP_003399262.1 TIGRFAM: dipeptidase; PFAM: peptidase M20; KEGG: cac:CAC2723 dipeptidase PepV YP_003399263.1 PFAM: beta-lactamase; KEGG: phe:Phep_2231 beta-lactamase YP_003399264.1 TIGRFAM: TIM-barrel protein, nifR3 family; PFAM: dihydrouridine synthase DuS; KEGG: ere:EUBREC_0061 tRNA-dihydrouridine synthase YP_003399265.1 TIGRFAM: transcriptional activator, Baf family; PFAM: Bvg accessory factor; KEGG: pth:PTH_0258 pantothenate kinase YP_003399266.1 PFAM: BioY protein; KEGG: dal:Dalk_0377 BioY protein YP_003399267.1 TIGRFAM: biotin/acetyl-CoA-carboxylase ligase; PFAM: biotin/lipoate A/B protein ligase; Helix-turn- helix type 11 domain protein; biotin protein ligase domain protein; KEGG: pth:PTH_0255 biotin-(acetyl-CoA carboxylase) ligase YP_003399268.1 KEGG: hmo:HM1_0678 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: peptidase M41; AAA ATPase central domain protein; peptidase M41 FtsH extracellular; SMART: AAA ATPase YP_003399269.1 KEGG: chy:CHY_1067 hypoxanthine phosphoribosyltransferase; TIGRFAM: hypoxanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase YP_003399270.1 TIGRFAM: tRNA(Ile)-lysidine synthetase; PFAM: PP-loop domain protein; KEGG: dau:Daud_0086 tRNA(Ile)-lysidine synthetase YP_003399271.1 PFAM: RNA binding S1 domain protein; KEGG: efa:EF0262 hypothetical protein YP_003399272.1 TIGRFAM: heavy metal translocating P-type ATPase; copper-translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Heavy metal transport/detoxification protein; Haloacid dehalogenase domain protein hydrolase; KEGG: eel:EUBELI_01464 Cu2+-exporting ATPase YP_003399273.1 KEGG: cno:NT01CX_1202 hypothetical protein YP_003399274.1 KEGG: ctc:CTC00669 hypothetical protein YP_003399275.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: cno:NT01CX_1200 putative amidohydrolase YP_003399276.1 PFAM: MOFRL domain protein; KEGG: cpy:Cphy_2103 hydroxypyruvate reductase YP_003399277.1 PFAM: MscS Mechanosensitive ion channel; KEGG: pth:PTH_0619 small-conductance mechanosensitive channel YP_003399278.1 PFAM: shikimate kinase; KEGG: cno:NT01CX_0620 shikimate kinase YP_003399279.1 PFAM: Shikimate dehydrogenase substrate binding domain protein; Shikimate/quinate 5-dehydrogenase; KEGG: cac:CAC0897 fusion: chorismate mutase and shikimate 5-dehydrogenase YP_003399280.1 PFAM: prephenate dehydratase; amino acid-binding ACT domain protein; KEGG: ckr:CKR_0706 hypothetical protein YP_003399281.1 KEGG: cbe:Cbei_4574 chorismate synthase; TIGRFAM: chorismate synthase; PFAM: chorismate synthase YP_003399282.1 TIGRFAM: 3-phosphoshikimate 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: ckr:CKR_0704 hypothetical protein YP_003399283.1 TIGRFAM: 3-dehydroquinate synthase; PFAM: 3-dehydroquinate synthase; KEGG: cac:CAC0894 3-dehydroquinate synthase YP_003399284.1 PFAM: Prephenate dehydrogenase; KEGG: cno:NT01CX_0626 prephenate dehydrogenase YP_003399285.1 TIGRFAM: phospho-2-dehydro-3-deoxyheptonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: cbe:Cbei_4577 3-deoxy-7-phosphoheptulonate synthase YP_003399286.1 KEGG: vap:Vapar_3997 alkaline phosphatase YP_003399287.1 PFAM: ATPase-like, ParA/MinD; KEGG: dps:DP2935 hypothetical protein YP_003399288.1 PFAM: Septum formation initiator; KEGG: fma:FMG_0998 hypothetical protein YP_003399289.1 PFAM: histone family protein DNA-binding protein; SMART: histone family protein DNA-binding protein; KEGG: pth:PTH_0121 nucleoid DNA-binding protein YP_003399290.1 TIGRFAM: MazG family protein; PFAM: MazG nucleotide pyrophosphohydrolase; KEGG: afl:Aflv_0051 tetrapyrrole methyltransferase domain fused to a MazG family NTP pyrophosphatase domain YP_003399291.1 PFAM: polysaccharide biosynthesis protein; multi antimicrobial extrusion protein MatE; KEGG: swo:Swol_0081 stage V sporulation protein B YP_003399292.1 KEGG: chy:CHY_0200 transcription-repair coupling factor; TIGRFAM: transcription-repair coupling factor; PFAM: transcription factor CarD; DEAD/DEAH box helicase domain protein; helicase domain protein; TRCF domain protein; SMART: DEAD-like helicase ; helicase domain protein YP_003399293.1 KEGG: chy:CHY_0787 fructose 1,6-bisphosphatase II; TIGRFAM: fructose-1,6-bisphosphatase, class II; PFAM: GlpX family protein YP_003399294.1 KEGG: drm:Dred_3181 CTP synthetase; TIGRFAM: CTP synthase; PFAM: CTP synthase-like; glutamine amidotransferase class-I YP_003399295.1 KEGG: chy:CHY_0124 arginyl-tRNA synthetase; TIGRFAM: arginyl-tRNA synthetase YP_003399296.1 PFAM: Domain of unknown function DUF1934; KEGG: cac:CAC2894 hypothetical protein YP_003399297.1 TIGRFAM: sodium/proline symporter; SSS sodium solute transporter superfamily; PFAM: Na+/solute symporter; KEGG: mac:MA0003 sodium:proline symporter YP_003399298.1 PFAM: Lipoprotein LpqB, GerMN domain; KEGG: dtu:Dtur_1084 cytochrome b5 YP_003399299.1 KEGG: cbf:CLI_3170 N-acetylmuramoyl-L-alanine amidase; PFAM: cell wall hydrolase/autolysin; SMART: cell wall hydrolase/autolysin YP_003399300.1 TIGRFAM: carbohydrate kinase, YjeF related protein; PFAM: protein of unknown function UPF0031; YjeF- family domain protein; KEGG: pth:PTH_0657 carbohydrate kinase YP_003399301.1 TIGRFAM: holo-acyl-carrier-protein synthase; PFAM: 4'-phosphopantetheinyl transferase; KEGG: sth:STH2938 holo-(acyl-carrier-protein) synthase YP_003399302.1 PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: asu:Asuc_0073 recombination factor protein RarA YP_003399303.1 PFAM: Cl- channel voltage-gated family protein; TrkA-C domain protein; KEGG: cbe:Cbei_2937 chloride channel, core YP_003399304.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: ere:EUBREC_1457 diaminopimelate decarboxylase YP_003399305.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ere:EUBREC_0186 ABC-type uncharacterized transport system, ATPase component YP_003399306.1 PFAM: inner-membrane translocator; KEGG: bhy:BHWA1_00397 hypothetical protein YP_003399307.1 PFAM: protein of unknown function DUF534; KEGG: dhd:Dhaf_2828 protein of unknown function DUF534 YP_003399308.1 PFAM: protein of unknown function DUF534; KEGG: dhd:Dhaf_2828 protein of unknown function DUF534 YP_003399309.1 TIGRFAM: methyltransferase FkbM family; KEGG: aba:Acid345_2845 methyltransferase FkbM YP_003399310.1 PFAM: peptidase M48 Ste24p; KEGG: ank:AnaeK_1042 peptidase M48 Ste24p YP_003399311.1 TIGRFAM: nuclease SbcCD, D subunit; PFAM: metallophosphoesterase; KEGG: sfu:Sfum_2821 nuclease SbcCD, D subunit YP_003399312.1 KEGG: reu:Reut_B5583 exonuclease SbcC, putative YP_003399313.1 PFAM: Radical SAM domain protein; KEGG: csc:Csac_0105 radical SAM domain-containing protein YP_003399314.1 PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein; KEGG: bvu:BVU_2082 6-pyruvoyl-tetrahydropterin synthase YP_003399315.1 TIGRFAM: exsB protein; PFAM: Queuosine synthesis-like; KEGG: shi:Shel_22460 ExsB protein YP_003399316.1 KEGG: bay:RBAM_013520 7-cyano-7-deazaguanine reductase; TIGRFAM: 7-cyano-7-deazaguanine reductase; PFAM: GTP cyclohydrolase I/Nitrile oxidoreductase YP_003399317.1 TIGRFAM: C_GCAxxG_C_C family protein; PFAM: C_GCAxxG_C_C family protein; KEGG: ele:Elen_2296 C_GCAxxG_C_C family protein YP_003399318.1 PFAM: AbgT putative transporter; KEGG: oih:OB3284 aminobenzoyl-glutamate transporter YP_003399320.1 KEGG: drm:Dred_2488 hypothetical protein YP_003399321.1 PFAM: protein of unknown function DUF107; KEGG: esi:Exig_0817 hypothetical protein YP_003399322.1 PFAM: glycosyl transferase family 9; KEGG: hor:Hore_18880 lipopolysaccharide heptosyltransferase III, putative YP_003399323.1 TIGRFAM: lipopolysaccharide heptosyltransferase I; lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: tye:THEYE_A0945 lipopolysaccharide heptosyltransferase II YP_003399324.1 TIGRFAM: D,D-heptose 1,7-bisphosphate phosphatase; histidinol-phosphate phosphatase family protein; hydrolase, HAD-superfamily, subfamily IIIA; KEGG: rce:RC1_0817 D,D-heptose 1,7-bisphosphate phosphatase 1, putative YP_003399325.1 TIGRFAM: ADP-L-glycero-D-manno-heptose-6-epimerase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: pca:Pcar_0024 ADP-L-glycero-D-mannoheptose-6- epimerase YP_003399326.1 TIGRFAM: rfaE bifunctional protein; cytidyltransferase-related domain protein; PFAM: PfkB domain protein; cytidylyltransferase; KEGG: mfa:Mfla_0769 D-beta-D-heptose 1-phosphate adenylyltransferase / D-alpha,beta-D-heptose 7-phosphate 1- kinase YP_003399327.1 TIGRFAM: phosphoheptose isomerase; PFAM: sugar isomerase (SIS); KEGG: rru:Rru_A2605 phosphoheptose isomerase YP_003399329.1 KEGG: hor:Hore_17440 hypothetical protein YP_003399330.1 PFAM: protein of unknown function DUF535; KEGG: vha:VIBHAR_04886 hypothetical protein YP_003399332.1 PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: pjd:Pjdr2_2866 cell wall hydrolase/autolysin YP_003399333.1 PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: hypothetical protein YP_003399334.1 PFAM: protein of unknown function UPF0029; KEGG: eat:EAT1b_0944 protein of unknown function UPF0029 YP_003399335.1 KEGG: bcy:Bcer98_3736 putative transposase YP_003399336.1 PFAM: Integrase catalytic region; KEGG: afl:Aflv_2103 transposase YP_003399337.1 PFAM: NLP/P60 protein; KEGG: tpd:Teth39_0205 NLP/P60 protein YP_003399338.1 PFAM: S-layer domain protein; KEGG: ttj:TTHA1893 S-layer protein precursor (P100 protein) YP_003399339.1 PFAM: S-layer domain protein; KEGG: ttj:TTHA1893 S-layer protein precursor (P100 protein) YP_003399340.1 PFAM: S-layer domain protein; KEGG: ttj:TTHA1893 S-layer protein precursor (P100 protein) YP_003399341.1 PFAM: S-layer domain protein; KEGG: ttj:TTHA1893 S-layer protein precursor (P100 protein) YP_003399342.1 SMART: Resolvase RNase H domain protein fold; KEGG: syf:Synpcc7942_0129 resolvase, RNase H-like fold YP_003399343.1 KEGG: dth:DICTH_0671 hypothetical protein YP_003399344.1 KEGG: eel:EUBELI_20121 endonuclease YP_003399345.1 KEGG: eel:EUBELI_20122 hypothetical protein YP_003399346.1 PFAM: permease YjgP/YjgQ family protein; KEGG: gvi:gvip124 hypothetical protein YP_003399347.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dfe:Dfer_4049 ABC transporter related YP_003399348.1 PFAM: OstA family protein; KEGG: lba:Lebu_2045 OstA family protein YP_003399349.1 PFAM: protein of unknown function DUF1239; KEGG: cyh:Cyan8802_4032 protein of unknown function DUF1239 YP_003399350.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: hor:Hore_18900 lipid A biosynthesis lauroyl acyltransferase YP_003399351.1 TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family; hydrolase, HAD-superfamily, subfamily IIIA; PFAM: Haloacid dehalogenase domain protein hydrolase; KEGG: sat:SYN_00949 3-deoxy-manno-octulosonate-8- phosphatase YP_003399352.1 KEGG: gsu:GSU1893 carbohydrate isomerase KpsF/GutQ family protein; TIGRFAM: KpsF/GutQ family protein; PFAM: sugar isomerase (SIS); hypothetical protein; SMART: hypothetical protein YP_003399353.1 TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase; PFAM: DAHP synthetase I/KDSA; KEGG: gme:Gmet_1277 2-dehydro-3- deoxyphosphooctonate aldolase YP_003399354.1 KEGG: gur:Gura_2980 3-deoxy-manno-octulosonate cytidylyltransferase; TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase; PFAM: acylneuraminate cytidylyltransferase YP_003399355.1 KEGG: dol:Dole_1433 tetraacyldisaccharide 4'-kinase; TIGRFAM: tetraacyldisaccharide 4'-kinase; PFAM: Tetraacyldisaccharide-1-P 4'-kinase; Three- deoxy-D-manno-octulosonic-acid transferase domain protein YP_003399356.1 KEGG: hor:Hore_18960 ABC transporter related; TIGRFAM: lipid A ABC exporter, fused ATPase and inner membrane subunits MsbA; PFAM: ABC transporter related; ABC transporter transmembrane region; SMART: AAA ATPase YP_003399357.1 TIGRFAM: lipid-A-disaccharide synthase; PFAM: glycosyl transferase family 19; KEGG: gme:Gmet_2350 lipid-A-disaccharide synthase YP_003399358.1 PFAM: protein of unknown function DUF1009; KEGG: tye:THEYE_A0089 hypothetical protein YP_003399359.1 KEGG: hor:Hore_17550 acyl-(acyl-carrier-protein)-- UDP-N-acetylglucosamine O-acyltransferase; TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N-acetylglu cosamineO-acyltransferase; PFAM: transferase hexapeptide repeat containing protein YP_003399360.1 TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ; UDP-3-0-acyl N-acetylglucosamine deacetylase; PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase; Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ; KEGG: ote:Oter_2576 bifunctional UDP-3-O-[3- hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)- hydroxymyristoyl-[acyl-carrier-protein] dehydratase YP_003399361.1 PFAM: lipid A biosynthesis acyltransferase; KEGG: hor:Hore_18900 lipid A biosynthesis lauroyl acyltransferase YP_003399363.1 TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; PFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase, non-repeat region; transferase hexapeptide repeat containing protein; KEGG: tye:THEYE_A0092 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase YP_003399364.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: hor:Hore_17650 outer membrane chaperone Skp (OmpH) YP_003399365.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: hypothetical protein YP_003399366.1 PFAM: outer membrane chaperone Skp (OmpH); KEGG: hor:Hore_17670 outer membrane chaperone Skp (OmpH) YP_003399367.1 PFAM: surface antigen (D15); surface antigen variable number repeat protein; KEGG: hor:Hore_17680 surface antigen (D15) YP_003399368.1 PFAM: protein of unknown function DUF490; KEGG: amr:AM1_0074 hypothetical protein YP_003399369.1 PFAM: outer membrane efflux protein; KEGG: dde:Dde_0961 outer membrane protein-like YP_003399370.1 PFAM: Mammalian cell entry related domain protein; KEGG: sat:SYN_00409 ABC-type transport system involved in resistance to organic solvents, periplasmic component YP_003399371.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00410 ABC-type transport system, ATP- binding component YP_003399372.1 PFAM: protein of unknown function DUF140; KEGG: cyh:Cyan8802_4107 protein of unknown function DUF140 YP_003399373.1 KEGG: hor:Hore_17720 hypothetical protein YP_003399374.1 KEGG: fal:FRAAL2344 acetyl CoA carboxylase, biotin carboxylase subunit (partial match) YP_003399375.1 KEGG: gka:GK3175 hypothetical protein YP_003399376.1 PFAM: cell shape determining protein MreB/Mrl; KEGG: hmo:HM1_1114 cell shape determining protein, MreB/mrl family, putative YP_003399377.1 TIGRFAM: UDP-N-acetylglucosamine 1- carboxyvinyltransferase; PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase); KEGG: drm:Dred_3148 UDP-N-acetylglucosamine 1- carboxyvinyltransferase YP_003399378.1 KEGG: pla:Plav_1122 17 kDa surface antigen YP_003399380.1 TIGRFAM: ATP synthase F1, epsilon subunit; PFAM: ATPase, F1 complex, delta/epsilon subunit- like; KEGG: pth:PTH_2811 F0F1 ATP synthase subunit epsilon YP_003399381.1 KEGG: mta:Moth_2378 F0F1 ATP synthase subunit beta; TIGRFAM: ATP synthase F1, beta subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; SMART: AAA ATPase YP_003399382.1 TIGRFAM: ATP synthase F1, gamma subunit; PFAM: H+transporting two-sector ATPase gamma subunit; KEGG: hmo:HM1_1103 ATP synthase f1, gamma subunit YP_003399383.1 KEGG: mta:Moth_2380 ATP synthase F1, alpha subunit; TIGRFAM: ATP synthase F1, alpha subunit; PFAM: H+transporting two-sector ATPase alpha/beta subunit central region; H+transporting two-sector ATPase alpha/beta subunit domain protein; H+transporting two- sector ATPase delta (OSCP) subunit YP_003399384.1 TIGRFAM: ATP synthase F0, B subunit; PFAM: H+transporting two-sector ATPase B/B' subunit; KEGG: slo:Shew_3849 F0F1 ATP synthase subunit B YP_003399385.1 TIGRFAM: ATP synthase F0, C subunit; PFAM: H+transporting two-sector ATPase C subunit; KEGG: lbu:LBUL_0638 F0F1 ATP synthase subunit C YP_003399386.1 TIGRFAM: ATP synthase F0, A subunit; PFAM: H+transporting two-sector ATPase A subunit; KEGG: dae:Dtox_4171 ATP synthase F0, A subunit YP_003399388.1 KEGG: drm:Dred_3159 UDP-N-acetylglucosamine 2- epimerase; TIGRFAM: UDP-N-acetylglucosamine 2-epimerase; PFAM: UDP-N-acetylglucosamine 2-epimerase YP_003399389.1 PFAM: glycosyl transferase, family 4, conserved region; KEGG: mta:Moth_0218 glycosyl transferase family protein YP_003399390.1 PFAM: Chromate transporter; KEGG: cpf:CPF_2509 chromate transport protein YP_003399391.1 PFAM: Chromate transporter; KEGG: aoe:Clos_2675 chromate transporter YP_003399392.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: dhd:Dhaf_2909 MATE efflux family protein YP_003399393.1 PFAM: sulfatase; KEGG: emi:Emin_0565 sulfatase YP_003399394.1 PFAM: diacylglycerol kinase catalytic region; KEGG: hau:Haur_1562 diacylglycerol kinase catalytic region YP_003399395.1 PFAM: GtrA family protein; KEGG: ele:Elen_1247 GtrA family protein YP_003399396.1 TIGRFAM: pro-sigmaK processing inhibitor BofA; PFAM: sigmaK-factor processing regulatory BofA; KEGG: cbf:CLI_0051 sigma-K factor processing regulatory protein BofA YP_003399397.1 KEGG: gka:GK0019 recombination protein RecR; TIGRFAM: recombination protein RecR; PFAM: TOPRIM domain protein; Zinc finger C4-type, RecR; SMART: Toprim sub domain protein YP_003399398.1 PFAM: conserved hypothetical protein; KEGG: hmo:HM1_0810 hypothetical protein YP_003399399.1 KEGG: syr:SynRCC307_0063 DNA polymerase III gamma/tau subunit; TIGRFAM: DNA polymerase III, subunits gamma and tau; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase YP_003399400.1 PFAM: FAD linked oxidase domain protein; KEGG: drm:Dred_0369 FAD linked oxidase domain- containing protein YP_003399401.1 PFAM: CMP/dCMP deaminase zinc-binding; KEGG: amt:Amet_0026 CMP/dCMP deaminase, zinc- binding YP_003399402.1 KEGG: bha:BH2280 homoserine O-succinyltransferase; TIGRFAM: homoserine O-succinyltransferase; PFAM: homoserine O-succinyltransferase YP_003399403.1 PFAM: cyclic nucleotide-binding; KEGG: ccu:Ccur_01090 transcriptional regulator, crp family YP_003399404.1 KEGG: nme:NMB0698 hypothetical protein YP_003399405.1 PFAM: metallophosphoesterase; KEGG: bcg:BCG9842_B4175 Ser/Thr protein phosphatase family protein YP_003399406.1 PFAM: Camphor resistance CrcB protein; KEGG: cyh:Cyan8802_1460 CrcB protein YP_003399407.1 TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; Methyltransferase type 11; KEGG: sth:STH2818 RNA methyltransferase YP_003399408.1 PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; KEGG: cpr:CPR_0512 nitrite/sulfite reductase-like protein YP_003399409.1 KEGG: cby:CLM_0262 hypothetical protein YP_003399410.1 PFAM: Auxin Efflux Carrier; KEGG: cbi:CLJ_B2802 auxin efflux carrier family protein YP_003399411.1 PFAM: short-chain dehydrogenase/reductase SDR; KEGG: lla:L142816 short chain dehydrogenase YP_003399412.1 PFAM: GCN5-related N-acetyltransferase; KEGG: shi:Shel_21300 sortase-like acyltransferase YP_003399413.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: dat:HRM2_43390 4Fe-4S iron-sulfur binding protein (ferredoxin) YP_003399414.1 PFAM: nitroreductase; KEGG: fnu:FN1223 dihydropteridine reductase YP_003399416.1 PFAM: sodium:dicarboxylate symporter; KEGG: amt:Amet_3175 sodium:dicarboxylate symporter YP_003399417.1 PFAM: D-galactarate dehydratase/altronate hydrolase domain protein; KEGG: chy:CHY_1290 UxaA family hydrolase YP_003399418.1 PFAM: SAF domain protein; KEGG: cdf:CD3003 carbohydrate hydrolase (N- terminus) YP_003399419.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cbe:Cbei_3221 LysR family transcriptional regulator YP_003399420.1 KEGG: fnu:FN1804 aminoacyl-histidine dipeptidase; TIGRFAM: aminoacyl-histidine dipeptidase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003399421.1 PFAM: C4-dicarboxylate anaerobic carrier-like; KEGG: amt:Amet_0661 C4-dicarboxylate anaerobic carrier YP_003399422.1 PFAM: regulatory protein TetR; KEGG: fnu:FN1803 TetR family transcriptional regulator YP_003399423.1 PFAM: protein of unknown function DUF6 transmembrane; KEGG: ote:Oter_0907 hypothetical protein YP_003399424.1 PFAM: Helix-turn-helix type 11 domain protein; 3H domain protein; KEGG: esi:Exig_2103 3H domain-containing protein YP_003399425.1 KEGG: gbm:Gbem_0275 glutamate racemase; TIGRFAM: glutamate racemase; PFAM: Asp/Glu/hydantoin racemase YP_003399426.1 KEGG: bha:BH3004 hypothetical protein YP_003399427.1 PFAM: Glu/Leu/Phe/Val dehydrogenase ; Glu/Leu/Phe/Val dehydrogenase dimerisation region; KEGG: fno:Fnod_1064 Glu/Leu/Phe/Val dehydrogenase YP_003399428.1 KEGG: nth:Nther_2075 hydrolase (HAD superfamily) YP_003399429.1 PFAM: domain of unknown function DUF1730; KEGG: cdf:CD0563 putative iron-sulfur cluster protein YP_003399430.1 KEGG: rbi:RB2501_15429 putative acylhydrolase YP_003399431.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, B subunit; PFAM: GatB region; GatB central domain protein; Asn/Gln amidotransferase; KEGG: drm:Dred_2340 aspartyl/glutamyl-tRNA amidotransferase subunit B YP_003399432.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, A subunit; PFAM: Amidase; KEGG: dae:Dtox_0765 glutamyl-tRNA(Gln) amidotransferase, A subunit YP_003399433.1 TIGRFAM: glutamyl-tRNA(Gln) amidotransferase, C subunit; PFAM: Glu-tRNAGln amidotransferase C subunit; KEGG: pjd:Pjdr2_1089 glutamyl-tRNA(Gln) amidotransferase, C subunit YP_003399434.1 PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein; KEGG: cth:Cthe_2799 cystathionine gamma-synthase YP_003399435.1 KEGG: cce:Ccel_2567 tartrate dehydrogenase; TIGRFAM: tartrate dehydrogenase; PFAM: isocitrate/isopropylmalate dehydrogenase YP_003399436.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: afr:AFE_0037 LysR family transcriptional regulator YP_003399438.1 PFAM: protein of unknown function DUF637 hemagglutinin putative; KEGG: spe:Spro_4402 filamentous haemagglutinin outer membrane protein YP_003399440.1 KEGG: spe:Spro_4077 filamentous haemagglutinin outer membrane protein YP_003399441.1 KEGG: dae:Dtox_0153 hypothetical protein YP_003399442.1 PFAM: protein of unknown function DUF637 hemagglutinin putative; KEGG: spe:Spro_4402 filamentous haemagglutinin outer membrane protein YP_003399443.1 PFAM: IstB domain protein ATP-binding protein; SMART: AAA ATPase; KEGG: sth:STH274 IS21 family transposase YP_003399444.1 PFAM: Integrase catalytic region; KEGG: gtn:GTNG_3485 transposase YP_003399445.1 TIGRFAM: adhesin HecA family; PFAM: protein of unknown function DUF637 hemagglutinin putative; Haemagluttinin repeat-containing protein; KEGG: plu:plu1149 hypothetical protein YP_003399446.1 TIGRFAM: filamentous haemagglutinin family outer membrane protein; adhesin HecA family; PFAM: filamentous haemagglutinin domain protein; Haemagluttinin repeat-containing protein; KEGG: cvi:CV_2872 hemagglutinin YP_003399447.1 PFAM: Polypeptide-transport-associated domain protein ShlB-type; Hemolysin activator HlyB domain protein; KEGG: rme:Rmet_5340 TonB box-like protein YP_003399448.1 KEGG: hmo:HM1_2458 glycyl-tRNA synthetase, beta subunit; TIGRFAM: glycyl-tRNA synthetase, beta subunit YP_003399449.1 KEGG: pjd:Pjdr2_2239 glycyl-tRNA synthetase, alpha subunit; TIGRFAM: glycyl-tRNA synthetase, alpha subunit; PFAM: glycyl-tRNA synthetase alpha subunit YP_003399450.1 TIGRFAM: RNA polymerase sigma factor RpoD; RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 3 domain protein; sigma-70 region 2 domain protein; sigma-70 region 1.2; sigma-70 1.1 domain protein; sigma-70 region 4 domain protein; KEGG: hmo:HM1_1995 RNA polymerase sigma factor RpoD YP_003399451.1 KEGG: pth:PTH_0906 DNA primase; TIGRFAM: DNA primase; PFAM: DNA primase catalytic core domain; zinc finger CHC2-family protein; TOPRIM domain protein; SMART: zinc finger CHC2-family protein; Toprim sub domain protein YP_003399452.1 PFAM: protein of unknown function DUF299; KEGG: nth:Nther_1210 protein of unknown function DUF299 YP_003399453.1 PFAM: hypothetical protein; Helix-turn- helix type 11 domain protein; KEGG: pth:PTH_0901 transcriptional regulator YP_003399454.1 TIGRFAM: phosphoenolpyruvate synthase; PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding; PEP-utilising protein mobile region; PEP- utilizing protein; KEGG: lpl:lp_1912 phosphoenolpyruvate synthase YP_003399455.1 PFAM: flavin reductase domain protein FMN-binding; KEGG: pdi:BDI_2172 putative flavoredoxin YP_003399456.1 PFAM: transport system permease protein; KEGG: cce:Ccel_3203 transport system permease protein YP_003399457.1 PFAM: metallophosphoesterase; KEGG: cdf:CD0346 putative phosphoesterase YP_003399458.1 PFAM: conserved hypothetical protein; KEGG: tex:Teth514_2248 hypothetical protein YP_003399459.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: ckr:CKR_1424 hypothetical protein YP_003399460.1 PFAM: protein of unknown function DUF163; KEGG: cpy:Cphy_0910 hypothetical protein YP_003399461.1 KEGG: chy:CHY_0057 putative serine protease Do; PFAM: peptidase S1 and S6 chymotrypsin/Hap; PDZ/DHR/GLGF domain protein; SMART: PDZ/DHR/GLGF domain protein YP_003399462.1 KEGG: swo:Swol_2443 hypothetical protein YP_003399463.1 PFAM: ferric-uptake regulator; KEGG: tte:TTE1767 Fe2+/Zn2+ uptake regulation proteins YP_003399464.1 PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: bfs:BF0621 putative ErfK/YbiS/YcfS/YnhG family protein YP_003399465.1 TIGRFAM: serine O-acetyltransferase; KEGG: dae:Dtox_0264 serine O-acetyltransferase YP_003399466.1 TIGRFAM: cysteine synthase A; cysteine synthase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: cce:Ccel_3186 cysteine synthase A YP_003399467.1 KEGG: cac:CA_P0014 protein tyrosine phosphatase II superfamily protein YP_003399468.1 TIGRFAM: HAD-superfamily hydrolase, subfamily IIB; PFAM: Haloacid dehalogenase domain protein hydrolase type 3; KEGG: shi:Shel_16040 HAD-superfamily hydrolase, subfamily IIB YP_003399469.1 KEGG: Ep400; E1A binding protein p400 ; K11320 E1A- binding protein p400 YP_003399470.1 PFAM: sodium:neurotransmitter symporter; KEGG: eel:EUBELI_01705 neurotransmitter:Na+ symporter, NSS family YP_003399471.1 PFAM: sodium:neurotransmitter symporter; KEGG: eel:EUBELI_01705 neurotransmitter:Na+ symporter, NSS family YP_003399472.1 PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cdf:CD0474 putative iron-sulfur protein YP_003399473.1 PFAM: thioesterase superfamily protein; KEGG: zmo:ZMO0511 acyl-CoA hydrolase YP_003399474.1 PFAM: lipolytic protein G-D-S-L family; KEGG: cdf:CD1576 putative arylesterase YP_003399475.1 KEGG: nis:NIS_1768 N-acetyl-L-amino acid amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003399476.1 TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein; KEGG: cpy:Cphy_3048 anaerobic ribonucleoside- triphosphate reductase activating protein YP_003399477.1 KEGG: cpy:Cphy_3050 anaerobic ribonucleoside triphosphate reductase; TIGRFAM: anaerobic ribonucleoside-triphosphate reductase; PFAM: ATP-cone domain protein; formate C- acetyltransferase glycine radical YP_003399478.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: ctc:CTC02464 amidohydrolase YP_003399479.1 PFAM: C4-dicarboxylate anaerobic carrier-like; KEGG: ctc:CTC02465 transporter YP_003399480.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: eel:EUBELI_20469 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator YP_003399481.1 PFAM: acetyl-CoA hydrolase/transferase; KEGG: acl:ACL_0506 acetyl-CoA hydrolase YP_003399482.1 PFAM: transposase IS4 family protein; KEGG: dsy:DSY1297 hypothetical protein YP_003399483.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D- component; KEGG: fnu:FN0208 (R)-2-hydroxyglutaryl-CoA dehydratase beta-subunit YP_003399484.1 PFAM: 2-hydroxyglutaryl-CoA dehydratase D- component; KEGG: fnu:FN0207 (R)-2-hydroxyglutaryl-CoA dehydratase alpha-subunit YP_003399485.1 KEGG: fnu:FN0206 (R)-2-hydroxyglutaryl-CoA dehydratase activator protein; TIGRFAM: CoA-substrate-specific enzyme activase; PFAM: ATPase BadF/BadG/BcrA/BcrD type YP_003399486.1 PFAM: carboxyl transferase; KEGG: fnu:FN0204 glutaconyl-CoA decarboxylase A subunit YP_003399487.1 PFAM: coenzyme A transferase; SMART: coenzyme A transferase; KEGG: fnu:FN0203 glutaconate CoA-transferase subunit B YP_003399488.1 PFAM: coenzyme A transferase; KEGG: fnu:FN0202 glutaconate CoA-transferase subunit A YP_003399489.1 TIGRFAM: metal dependent phophohydrolase; PFAM: Polynucleotide adenylyltransferase region; metal-dependent phosphohydrolase HD sub domain; KEGG: dau:Daud_0478 metal dependent phosphohydrolase YP_003399490.1 KEGG: pth:PTH_0829 ribonucleases G and E; TIGRFAM: ribonuclease, Rne/Rng family; PFAM: RNA-binding protein AU-1/Ribonuclease E/G; RNA binding S1 domain protein YP_003399491.1 PFAM: Protein of unknown function DUF2344; KEGG: dhd:Dhaf_4340 radical sam protein, putative YP_003399492.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cth:Cthe_0156 radical SAM family protein YP_003399493.1 TIGRFAM: rod shape-determining protein RodA; PFAM: cell cycle protein; KEGG: dae:Dtox_3332 rod shape-determining protein RodA YP_003399494.1 KEGG: geo:Geob_3477 penicillin-binding protein 2; TIGRFAM: penicillin-binding protein 2; PFAM: penicillin-binding protein transpeptidase; Penicillin-binding protein dimerisation domain YP_003399495.1 TIGRFAM: rod shape-determining protein MreD; KEGG: dae:Dtox_3337 rod shape-determining protein MreD YP_003399496.1 TIGRFAM: rod shape-determining protein MreC; PFAM: Rod shape-determining protein MreC; KEGG: nth:Nther_0516 rod shape-determining protein MreC YP_003399497.1 TIGRFAM: cell shape determining protein, MreB/Mrl family; PFAM: cell shape determining protein MreB/Mrl; KEGG: sth:STH372 rod shape-determining protein MreB YP_003399498.1 TIGRFAM: DNA repair protein RadC; PFAM: DNA repair protein RadC; helix-hairpin-helix motif; KEGG: gtn:GTNG_2548 DNA repair protein RadC YP_003399499.1 TIGRFAM: maf protein; PFAM: Maf family protein; KEGG: sth:STH370 septum formation protein Maf YP_003399500.1 KEGG: cac:CAC1239 hypothetical protein YP_003399501.1 KEGG: dat:HRM2_32050 SigE YP_003399503.1 KEGG: aoe:Clos_0443 sodium ion-translocating decarboxylase, beta subunit; TIGRFAM: sodium ion-translocating decarboxylase, beta subunit; PFAM: Na+transporting methylmalonyl- CoA/oxaloacetate decarboxylase beta subunit YP_003399504.1 PFAM: biotin/lipoyl attachment domain-containing protein; KEGG: pth:PTH_1366 methylmalonyl-CoA decarboxylase, gamma subunit YP_003399505.1 TIGRFAM: sodium pump decarboxylase, gamma subunit; PFAM: sodium pump decarboxylase gamma subunit YP_003399506.1 PFAM: carboxyl transferase; KEGG: tte:TTE1220 acetyl-CoA carboxylase alpha subunit YP_003399507.1 KEGG: aoe:Clos_0435 acetyl-CoA hydrolase; TIGRFAM: succinate CoA transferase; PFAM: acetyl-CoA hydrolase/transferase YP_003399508.1 PFAM: Fe-S cluster domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tex:Teth514_2145 Fe-S cluster domain- containing protein YP_003399509.1 PFAM: ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: dth:DICTH_0761 anti-sigma regulatory factor YP_003399510.1 PFAM: DRTGG domain protein; KEGG: cpy:Cphy_3800 DRTGG domain-containing protein YP_003399511.1 PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide repeat; KEGG: ctc:CTC02319 serine/threonine kinase, putative regulatory protein YP_003399512.1 PFAM: transcriptional activator domain; Pentatricopeptide repeat-containing protein; KEGG: sgo:SGO_1814 putative regulatory protein YP_003399513.1 TIGRFAM: imidazolonepropionase; PFAM: amidohydrolase; KEGG: ctc:CTC02320 imidazolonepropionase YP_003399514.1 KEGG: ctc:CTC02321 urocanate hydratase; TIGRFAM: urocanate hydratase; PFAM: Urocanase YP_003399515.1 PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dps:DP2376 biotin synthase YP_003399516.1 TIGRFAM: MATE efflux family protein; PFAM: multi antimicrobial extrusion protein MatE; KEGG: msi:Msm_0152 Na(+)-driven multidrug efflux pump NorM YP_003399517.1 PFAM: amino acid permease-associated region; KEGG: cdf:CD3092 putative amino acid permease YP_003399518.1 PFAM: peptidase C26; KEGG: lac:LBA1903 glutamine amidotransferase YP_003399519.1 PFAM: homocysteine S-methyltransferase; dihydropteroate synthase DHPS; Methionine synthase B12- binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: aoe:Clos_0080 homocysteine S- methyltransferase YP_003399520.1 PFAM: Vitamin B12 dependent methionine synthase activation region; KEGG: cdf:CD3597 hypothetical protein YP_003399521.1 PFAM: methylenetetrahydrofolate reductase; KEGG: ank:AnaeK_2769 5,10-methylenetetrahydrofolate reductase YP_003399522.1 PFAM: regulatory protein GntR HTH; aminotransferase class I and II; SMART: regulatory protein GntR HTH; KEGG: cbb:CLD_2591 GntR family transcriptional regulator YP_003399523.1 PFAM: AzlC family protein; KEGG: bsu:BSU26710 branched-chain amino acid transporter YP_003399524.1 PFAM: branched-chain amino acid transport; KEGG: bsu:BSU26700 branched-chain amino acid transporter YP_003399525.1 PFAM: phosphoribosyltransferase; KEGG: dps:DP1516 adenine phosphoribosyltransferase YP_003399527.1 PFAM: Polyphosphate kinase; KEGG: hmo:HM1_0232 polyphosphate kinase YP_003399528.1 PFAM: Ppx/GppA phosphatase; KEGG: pmo:Pmob_0465 exopolyphosphatase-like protein YP_003399529.1 PFAM: Ppx/GppA phosphatase; KEGG: drm:Dred_1179 Ppx/GppA phosphatase YP_003399530.1 KEGG: cpi:Cpin_2966 hypothetical protein YP_003399531.1 KEGG: aoe:Clos_2310 ATP-dependent metalloprotease FtsH; TIGRFAM: ATP-dependent metalloprotease FtsH; PFAM: AAA ATPase central domain protein; peptidase M41 FtsH extracellular; peptidase M41; SMART: AAA ATPase YP_003399532.1 PFAM: AbgT putative transporter; KEGG: tde:TDE2328 efflux pump component MtrF YP_003399533.1 KEGG: sth:STH1727 A/G-specific adenine glycosylase; TIGRFAM: A/G-specific adenine glycosylase; PFAM: HhH-GPD family protein; iron-sulfur cluster loop; SMART: HhH-GPD family protein; iron-sulfur cluster loop YP_003399534.1 PFAM: NUDIX hydrolase; KEGG: hypothetical protein YP_003399535.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: pmu:PM0932 hypothetical protein YP_003399536.1 KEGG: cbe:Cbei_2756 UreA amidolyase related protein; TIGRFAM: urea amidolyase related protein; PFAM: Allophanate hydrolase subunit 2; SMART: Allophanate hydrolase subunit 2 YP_003399537.1 PFAM: Allophanate hydrolase subunit 1; SMART: Allophanate hydrolase subunit 1; KEGG: bld:BLi00501 KipI YP_003399538.1 KEGG: tau:Tola_1857 hypothetical protein YP_003399539.1 PFAM: LamB/YcsF family protein; KEGG: gwc:GWCH70_1948 LamB/YcsF family protein YP_003399540.1 KEGG: bld:BLi00499 YcsG YP_003399541.1 PFAM: S-layer domain protein; YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: asu:Asuc_1158 YadA domain-containing protein YP_003399542.1 PFAM: Helix-turn-helix type 11 domain protein; KEGG: ere:EUBREC_1036 hypothetical protein YP_003399543.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cac:CAC1046 LysR family transcriptional regulator YP_003399544.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: eel:EUBELI_00660 LysR family transcriptional regulator, hydrogen peroxide-inducible genes activator YP_003399545.1 PFAM: protein of unknown function DUF214; KEGG: dra:DR_B0050 hypothetical protein YP_003399546.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gau:GAU_2113 putative ABC transporter ATP- binding protein YP_003399547.1 KEGG: rru:Rru_A1290 hypothetical protein YP_003399548.1 PFAM: Alkaline phosphatase; SMART: Alkaline phosphatase; KEGG: kra:Krad_0180 alkaline phosphatase YP_003399549.1 TIGRFAM: phosphate transport system regulatory protein PhoU; PFAM: PhoU family protein; KEGG: ate:Athe_1482 phosphate uptake regulator, PhoU YP_003399550.1 KEGG: ldb:Ldb0959 phosphate ABC transporter ATP- binding protein; TIGRFAM: phosphate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase YP_003399551.1 TIGRFAM: phosphate ABC transporter, inner membrane subunit PstA; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lbu:LBUL_0869 ABC-type phosphate transport system, permease component YP_003399552.1 TIGRFAM: phosphate binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: lbu:LBUL_0867 ABC-type phosphate transport system, periplasmic component YP_003399553.1 PFAM: Orn/DAP/Arg decarboxylase 2; KEGG: bha:BH3958 carboxynorspermidine decarboxylase YP_003399554.1 PFAM: Saccharopine dehydrogenase; KEGG: eel:EUBELI_01424 saccharopine dehydrogenase (NAD+, L-lysine forming) YP_003399555.1 TIGRFAM: agmatinase; PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: cpy:Cphy_3053 agmatinase YP_003399556.1 TIGRFAM: spermidine synthase; PFAM: Spermine synthase; KEGG: aoe:Clos_0384 spermidine synthase YP_003399557.1 PFAM: Orn/Lys/Arg decarboxylase major region; Orn/Lys/Arg decarboxylase domain protein; KEGG: ere:EUBREC_3345 lysine decarboxylase YP_003399558.1 KEGG: ppd:Ppro_2443 eight transmembrane protein EpsH YP_003399559.1 KEGG: bra:BRADO0372 hypothetical protein YP_003399560.1 PFAM: hydrogenase large subunit domain protein; 4Fe- 4S ferredoxin iron-sulfur binding domain protein; KEGG: dhd:Dhaf_0813 hydrogenase large subunit domain protein YP_003399561.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dhd:Dhaf_3134 ABC transporter related YP_003399562.1 TIGRFAM: sulfite reductase, subunit A; KEGG: cac:CAC1513 anaerobic sulfite reductase (Fe-S subunit) YP_003399563.1 TIGRFAM: sulfite reductase, subunit B; PFAM: oxidoreductase FAD/NAD(P)-binding domain protein; Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain; KEGG: cbe:Cbei_0784 anaerobic sulfite reductase subunit B YP_003399564.1 TIGRFAM: sulfite reductase, subunit C; PFAM: nitrite and sulphite reductase 4Fe-4S region; nitrite/sulfite reductase hemoprotein beta-component ferrodoxin domain protein; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cac:CAC1515 anaerobic sulfite reduction protein C, reductase YP_003399565.1 TIGRFAM: phosphodiesterase, MJ0936 family; PFAM: metallophosphoesterase; KEGG: eel:EUBELI_00633 hypothetical protein YP_003399566.1 PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pmr:PMI3246 vitamin B12/cobalamin outer membrane transporter YP_003399568.1 TIGRFAM: ribosomal protein L17; PFAM: ribosomal protein L17; KEGG: cpr:CPR_2369 50S ribosomal protein L17 YP_003399569.1 KEGG: pjd:Pjdr2_5652 DNA-directed RNA polymerase, alpha subunit; TIGRFAM: DNA-directed RNA polymerase, alpha subunit; PFAM: RNA polymerase insert; RNA polymerase dimerisation; RNA polymerase alpha subunit domain protein; SMART: RNA polymerase RpoA/D/Rpb3-type YP_003399570.1 KEGG: eel:EUBELI_00325 small subunit ribosomal protein S4; TIGRFAM: ribosomal protein S4; PFAM: RNA-binding S4 domain protein; ribosomal protein S4; SMART: RNA-binding S4 domain protein YP_003399571.1 TIGRFAM: 30S ribosomal protein S11; PFAM: ribosomal protein S11; KEGG: cce:Ccel_0785 ribosomal protein S11 YP_003399572.1 TIGRFAM: 30S ribosomal protein S13; PFAM: ribosomal protein S13; KEGG: sth:STH3050 30S ribosomal protein S13 YP_003399573.1 TIGRFAM: ribosomal protein L36; PFAM: ribosomal protein L36; KEGG: tte:TTE2267 ribosomal protein L36 YP_003399574.1 TIGRFAM: translation initiation factor IF-1; PFAM: S1 IF1 family protein; KEGG: bwe:BcerKBAB4_0128 translation initiation factor IF-1 YP_003399575.1 TIGRFAM: adenylate kinase; PFAM: adenylate kinase; adenylate kinase lid domain protein; KEGG: hmo:HM1_1399 adenylate kinase YP_003399576.1 TIGRFAM: preprotein translocase, SecY subunit; PFAM: SecY protein; KEGG: hmo:HM1_1398 preprotein translocase, SecY subunit YP_003399577.1 TIGRFAM: ribosomal protein L15; PFAM: ribosomal protein L15; KEGG: cbf:CLI_3644 50S ribosomal protein L15 YP_003399578.1 TIGRFAM: ribosomal protein L30; PFAM: ribosomal protein L30; KEGG: pth:PTH_0337 ribosomal protein L30/L7E YP_003399579.1 TIGRFAM: ribosomal protein S5; PFAM: Ribosomal protein S5 ; ribosomal protein S5 domain protein; KEGG: pth:PTH_0336 30S ribosomal protein S5 YP_003399580.1 TIGRFAM: ribosomal protein L18; PFAM: ribosomal protein L18P/L5E; KEGG: lba:Lebu_0255 ribosomal protein L18 YP_003399581.1 TIGRFAM: ribosomal protein L6; PFAM: Ribosomal protein L6, alpha-beta domain; KEGG: hmo:HM1_1393 50S ribosomal protein L6 YP_003399582.1 PFAM: ribosomal protein S8; KEGG: chy:CHY_2295 30S ribosomal protein S8 YP_003399583.1 PFAM: ribosomal protein S14; KEGG: hmo:HM1_1391 30S ribosomal protein S14 YP_003399584.1 PFAM: ribosomal protein L5; KEGG: dae:Dtox_0298 ribosomal protein L5 YP_003399585.1 KEGG: dae:Dtox_0297 ribosomal protein L24; TIGRFAM: ribosomal protein L24; PFAM: KOW domain protein; SMART: KOW domain protein YP_003399586.1 TIGRFAM: ribosomal protein L14; PFAM: ribosomal protein L14b/L23e; KEGG: eel:EUBELI_00309 large subunit ribosomal protein L14 YP_003399587.1 TIGRFAM: 30S ribosomal protein S17; PFAM: ribosomal protein S17; KEGG: eel:EUBELI_00308 small subunit ribosomal protein S17 YP_003399588.1 TIGRFAM: ribosomal protein L29; PFAM: ribosomal protein L29; KEGG: btl:BALH_0116 50S ribosomal protein L29 YP_003399589.1 TIGRFAM: ribosomal protein L16; PFAM: Ribosomal protein L10e/L16; KEGG: dsy:DSY0478 50S ribosomal protein L16 YP_003399590.1 KEGG: drm:Dred_0221 30S ribosomal protein S3; TIGRFAM: ribosomal protein S3; PFAM: ribosomal protein S3- domain protein; Ribosomal protein S3 domain; KH type 2 domain protein; SMART: KH domain protein YP_003399591.1 TIGRFAM: ribosomal protein L22; PFAM: ribosomal protein L22/L17; KEGG: sth:STH3070 50S ribosomal protein L22 YP_003399592.1 TIGRFAM: ribosomal protein S19; PFAM: ribosomal protein S19/S15; KEGG: cth:Cthe_2907 30S ribosomal protein S19 YP_003399593.1 TIGRFAM: ribosomal protein L2; PFAM: ribosomal protein L2; KEGG: mta:Moth_2457 50S ribosomal protein L2 YP_003399594.1 PFAM: Ribosomal protein L25/L23; KEGG: chy:CHY_2307 50S ribosomal protein L23 YP_003399595.1 PFAM: ribosomal protein L4/L1e; KEGG: drm:Dred_0216 ribosomal protein L4/L1e YP_003399596.1 TIGRFAM: 50S ribosomal protein L3; PFAM: ribosomal protein L3; KEGG: hmo:HM1_1378 50S ribosomal protein L3 YP_003399597.1 TIGRFAM: ribosomal protein S10; PFAM: ribosomal protein S10; KEGG: dae:Dtox_0285 ribosomal protein S10 YP_003399598.1 TIGRFAM: translation elongation factor Tu; small GTP-binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor Tu domain protein; KEGG: aac:Aaci_2713 translation elongation factor Tu YP_003399599.1 TIGRFAM: translation elongation factor G; small GTP- binding protein; PFAM: protein synthesis factor GTP-binding; elongation factor Tu domain 2 protein; elongation factor G domain IV; elongation factor G domain protein; KEGG: dhd:Dhaf_0419 translation elongation factor G YP_003399600.1 TIGRFAM: ribosomal protein S7; PFAM: ribosomal protein S7; KEGG: afl:Aflv_0101 30S ribosomal protein S7 YP_003399601.1 TIGRFAM: ribosomal protein S12; PFAM: ribosomal protein S12/S23; KEGG: hmo:HM1_1373 30S ribosomal protein S12 YP_003399602.1 PFAM: ribosomal protein L7Ae/L30e/S12e/Gadd45; KEGG: chy:CHY_2316 ribosomal protein L7ae family protein YP_003399603.1 PFAM: Cupin 2 conserved barrel domain protein; KEGG: dds:Ddes_0206 cupin 2 conserved barrel domain protein YP_003399604.1 KEGG: lsa:LSA0310 integral membrane protein YP_003399605.1 PFAM: protein of unknown function DUF1212; KEGG: tde:TDE0712 hypothetical protein YP_003399606.1 KEGG: hmo:HM1_0011 hypothetical protein YP_003399607.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hmo:HM1_1750 abc transporter, ATP-binding protein, putative YP_003399608.1 TIGRFAM: UDP-glucose 4-epimerase; PFAM: NAD-dependent epimerase/dehydratase; KEGG: cth:Cthe_0186 UDP-galactose 4-epimerase YP_003399609.1 PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I; phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III; phosphoglucomutase/phosphomannomutase; KEGG: drm:Dred_3126 phosphomannomutase YP_003399612.1 PFAM: integrase family protein; KEGG: sar:SAR0366 putative integrase YP_003399613.1 PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: cbt:CLH_1700 putative transcriptional regulator YP_003399616.1 KEGG: dal:Dalk_4182 hypothetical protein YP_003399618.1 PFAM: protein of unknown function DUF927; KEGG: cpy:Cphy_2984 superfamily II helicase YP_003399620.1 TIGRFAM: transcriptional regulator, Rrf2 family; PFAM: protein of unknown function UPF0074; KEGG: cpy:Cphy_0009 BadM/Rrf2 family transcriptional regulator YP_003399621.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; NADH ubiquinone oxidoreductase, F subunit, iron sulphur binding; KEGG: cbt:CLH_1645 pyridine nucleotide-disulphide oxidoreductase family protein YP_003399622.1 TIGRFAM: hydrogenase, Fe-only; PFAM: hydrogenase large subunit domain protein; NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding; ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; iron hydrogenase small subunit; KEGG: cbt:CLH_1644 iron hydrogenase 1 YP_003399623.1 KEGG: rso:RSc2165 pyrrolidone-carboxylate peptidase; TIGRFAM: pyrrolidone-carboxylate peptidase; PFAM: peptidase C15 pyroglutamyl peptidase I YP_003399624.1 PFAM: Capsule synthesis protein, CapA; KEGG: cdf:CD0173 putative lipoprotein YP_003399625.1 PFAM: major facilitator superfamily MFS_1; KEGG: apv:Apar_0425 drug resistance transporter, EmrB/QacA subfamily YP_003399626.1 KEGG: ypg:YpAngola_A0185 hypothetical protein YP_003399627.1 KEGG: dae:Dtox_2007 ATP-dependent chaperone ClpB; TIGRFAM: ATP-dependent chaperone ClpB; PFAM: ATPase AAA-2 domain protein; AAA ATPase central domain protein; Clp domain protein; Clp ATPase- like; SMART: AAA ATPase YP_003399628.1 PFAM: adenylate cyclase; KEGG: pfl:PFL_5943 hypothetical protein YP_003399629.1 PFAM: ferric-uptake regulator; KEGG: tte:TTE1767 Fe2+/Zn2+ uptake regulation proteins YP_003399630.1 PFAM: Dicarboxylate carrier MatC domain protein; KEGG: mmw:Mmwyl1_0970 dicarboxylate carrier MatC domain-containing protein YP_003399631.1 KEGG: cma:Cmaq_1396 hypothetical protein YP_003399632.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cac:CAC3361 LysR family transcriptional regulator YP_003399633.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: amt:Amet_3215 LysR family transcriptional regulator YP_003399634.1 PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: efe:EFER_3668 putative isocitrate dehydrogenase YP_003399635.1 PFAM: Dicarboxylate carrier MatC domain protein; KEGG: efe:EFER_3664 hypothetical protein; putative membrane protein YP_003399636.1 KEGG: efe:EFER_3663 putative lactonase YP_003399637.1 TIGRFAM: aconitate hydratase; PFAM: aconitate hydratase domain protein; KEGG: mta:Moth_1882 aconitate hydratase YP_003399638.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: bbe:BBR47_25340 transcriptional regulator YP_003399639.1 PFAM: aconitate hydratase domain protein; KEGG: ecl:EcolC_2891 aconitate hydratase domain- containing protein YP_003399640.1 PFAM: protein of unknown function DUF453; KEGG: efe:EFER_3666 hypothetical protein YP_003399641.1 PFAM: amidohydrolase 2; KEGG: mno:Mnod_8318 amidohydrolase 2 YP_003399642.1 PFAM: nitroreductase; KEGG: bvu:BVU_2494 putative NADH dehydrogenase/NAD(P)H nitroreductase YP_003399643.1 PFAM: amidohydrolase; KEGG: sei:SPC_4564 dihydroorotase YP_003399644.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; Extracellular solute-binding protein, family 7, bacteria; KEGG: ere:EUBREC_2838 hypothetical protein YP_003399645.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: asu:Asuc_0367 tripartite ATP-independent periplasmic transporter DctQ YP_003399646.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cac:CAC3361 LysR family transcriptional regulator YP_003399647.1 PFAM: protein of unknown function DUF1667; KEGG: tpd:Teth39_0539 hypothetical protein YP_003399648.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: sat:SYN_02447 pyridine nucleotide-disulphide oxidoreductase family protein YP_003399649.1 PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: sat:SYN_02446 glycerol-3-phosphate dehydrogenase YP_003399650.1 PFAM: Citrate transporter; KEGG: ere:EUBREC_1208 citrate transporter YP_003399651.1 PFAM: helix-turn-helix- domain containing protein AraC type; SMART: Helix-turn-helix, AraC domain; KEGG: amt:Amet_0763 helix-turn-helix domain- containing protein YP_003399652.1 KEGG: gka:GK1970 hypothetical protein YP_003399653.1 TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: cce:Ccel_2593 endoribonuclease L-PSP YP_003399654.1 PFAM: D-aminoacylase domain protein; amidohydrolase; KEGG: drm:Dred_0263 N-acyl-D-amino-acid deacylase YP_003399655.1 PFAM: Na+/solute symporter; KEGG: dde:Dde_1268 putative sodium:solute symport protein YP_003399656.1 PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: drm:Dred_0260 peptidase YP_003399657.1 TIGRFAM: diaminopropionate ammonia-lyase; PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: dhd:Dhaf_2963 diaminopropionate ammonia-lyase YP_003399658.1 PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; SMART: AAA ATPase; KEGG: drm:Dred_0258 sigma-54 dependent trancsriptional regulator YP_003399659.1 PFAM: sodium:dicarboxylate symporter; KEGG: shw:Sputw3181_3312 sodium:dicarboxylate symporter YP_003399660.1 PFAM: alpha/beta hydrolase fold; KEGG: ctc:CTC02183 putative arylesterase, non-heme chloride peroxidase YP_003399661.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: asu:Asuc_1715 ABC transporter related YP_003399662.1 PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pmu:PM1455 AfuB YP_003399663.1 PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: pmu:PM1456 hypothetical protein YP_003399664.1 PFAM: extracellular solute-binding protein family 1; KEGG: sth:STH1146 ABC transporter substrate-binding protein YP_003399665.1 KEGG: bcl:ABC0392 hypothetical protein YP_003399666.1 PFAM: Arginase/agmatinase/formiminoglutamase; KEGG: sat:SYN_01147 arginase YP_003399667.1 PFAM: natural resistance-associated macrophage protein; KEGG: oih:OB0737 hypothetical protein YP_003399668.1 PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: aau:AAur_0478 IclR family transcriptional regulator YP_003399669.1 KEGG: oih:OB3444 allantoate amidohydrolase; TIGRFAM: amidase, hydantoinase/carbamoylase family; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003399670.1 KEGG: amt:Amet_4336 amidohydrolase; TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein YP_003399671.1 PFAM: sodium/glutamate symporter; KEGG: cgt:cgR_2677 hypothetical protein YP_003399672.1 PFAM: Creatininase; KEGG: tte:TTE1020 uncharacterized protein, putative amidase YP_003399673.1 PFAM: regulatory protein LysR; LysR substrate- binding; KEGG: cac:CAC3409 LysR family transcriptional regulator YP_003399674.1 PFAM: GntR domain protein; regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: amt:Amet_0553 GntR family transcriptional regulator YP_003399675.1 TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: Extracellular solute-binding protein, family 7, bacteria; KEGG: csa:Csal_2976 TRAP dicarboxylate transporter, DctP subunit YP_003399676.1 PFAM: Tripartite ATP-independent periplasmic transporter DctQ component; KEGG: csa:Csal_1073 tripartite ATP-independent periplasmic transporter DctQ YP_003399677.1 TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: pat:Patl_0772 TRAP dicarboxylate transporter, DctM subunit YP_003399678.1 PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: csc:Csac_2739 mandelate racemase/muconate lactonizing protein YP_003399679.1 KEGG: bcy:Bcer98_3736 putative transposase YP_003399680.1 PFAM: Integrase catalytic region; KEGG: afl:Aflv_2103 transposase YP_003399681.1 PFAM: protein of unknown function DUF112 transmembrane; KEGG: efe:EFER_0273 hypothetical protein YP_003399682.1 KEGG: efe:EFER_0274 hypothetical protein; putative membrane protein YP_003399683.1 PFAM: conserved hypothetical protein; KEGG: asu:Asuc_1849 hypothetical protein YP_003399684.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cac:CAC3361 LysR family transcriptional regulator YP_003399685.1 KEGG: apa:APP7_0185 predicted Mn2+ and Fe2+ transporters of the NRAMP family YP_003399686.1 KEGG: ere:EUBREC_3109 hypothetical protein YP_003399687.1 KEGG: cma:Cmaq_1396 hypothetical protein YP_003399688.1 PFAM: Citrate transporter; KEGG: dde:Dde_1252 cation transporter YP_003399689.1 PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; KEGG: rpc:RPC_2727 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding YP_003399690.1 PFAM: sodium/glutamate symporter; KEGG: pdi:BDI_1632 hypothetical protein YP_003399691.1 PFAM: Dimethylmenaquinone methyltransferase; KEGG: rpc:RPC_2726 dimethylmenaquinone methyltransferase YP_003399692.1 PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: cbe:Cbei_2867 LysR family transcriptional regulator YP_003399693.1 PFAM: Phosphogluconate dehydrogenase, NAD-binding, putative-like; NADP oxidoreductase coenzyme F420- dependent; KEGG: bcl:ABC3757 hypothetical protein YP_003399694.1 TIGRFAM: D-3-phosphoglycerate dehydrogenase; PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; D-isomer specific 2-hydroxyacid dehydrogenase catalytic region; amino acid-binding ACT domain protein; KEGG: amt:Amet_4275 D-3-phosphoglycerate dehydrogenase YP_003399695.1 PFAM: protein of unknown function DUF195; KEGG: mca:MCA0339 hypothetical protein YP_003399696.1 PFAM: regulatory protein TetR; KEGG: bcq:BCQ_4468 transcriptional regulator, TetR family YP_003399697.1 TIGRFAM: heavy metal translocating P-type ATPase; ATPase, P-type (transporting), HAD superfamily, subfamily IC; PFAM: E1-E2 ATPase-associated domain protein; Haloacid dehalogenase domain protein hydrolase; KEGG: ere:EUBREC_1234 hypothetical protein YP_003399698.1 KEGG: apr:Apre_0033 hypothetical protein YP_003399699.1 PFAM: YadA domain protein; Haemagluttinin domain protein; Hep_Hag repeat-containing protein; KEGG: apl:APL_0104 autotransporter adhesin YP_003399700.1 TIGRFAM: addiction module antitoxin, RelB/DinJ family; PFAM: RelB antitoxin; KEGG: fma:FMG_1585 hypothetical protein YP_003399701.1 PFAM: gamma-glutamyltranspeptidase; KEGG: amt:Amet_0676 gamma-glutamyltransferase YP_003399702.1 KEGG: bfs:BF1066 putative ATP/GTP-binding protein YP_003399703.1 KEGG: bhy:BHWA1_00150 peptidase T; TIGRFAM: peptidase T; PFAM: peptidase dimerisation domain protein; peptidase M20 YP_003399704.1 PFAM: Tex-like protein-like; RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: sth:STH2928 ribosomal protein S1-like protein YP_003399705.1 PFAM: cobalt transport protein; KEGG: pth:PTH_1659 ABC-type cobalt transport system, permease component CbiQ and related transporters YP_003399706.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: mba:Mbar_A3550 cobalt transport ATP-binding protein YP_003399707.1 PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tsi:TSIB_1505 putative ABC transporter ATP- binding protein YP_003399708.1 KEGG: hmo:HM1_0776 hypothetical protein YP_003399709.1 PFAM: regulatory protein TetR; KEGG: bbe:BBR47_26850 putative transcriptional regulator YP_003399710.1 PFAM: heat shock protein Hsp20; KEGG: eel:EUBELI_20272 hypothetical protein YP_003399711.1 KEGG: hypothetical protein YP_003399712.1 KEGG: dsy:DSY1255 hypothetical protein YP_003399713.1 TIGRFAM: fumarate hydratase, class II; PFAM: fumarate lyase; Fumarase C-like; KEGG: cla:Cla_0424 fumarate hydratase, class II YP_003399714.1 TIGRFAM: TRAP transporter, 4TM/12TM fusion protein; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: amt:Amet_0781 TRAP transporter, 4TM/12TM fusion protein YP_003399715.1 PFAM: Domain of unknown function DUF1850; KEGG: amt:Amet_0780 hypothetical protein YP_003399716.1 TIGRFAM: TRAP transporter solute receptor, TAXI family; KEGG: amt:Amet_0779 TRAP transporter solute receptor TAXI family protein YP_003399717.1 PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: cpy:Cphy_3412 putative oxidoreductase YP_003399718.1 KEGG: ldb:Ldb0217 hypothetical protein YP_003399719.1 PFAM: ATPase; DUF234 DEXX-box ATPase; KEGG: kol:Kole_0490 ATPase YP_003399720.1 KEGG: nth:Nther_2261 peptidase C26 YP_003399721.1 TIGRFAM: RNA polymerase sigma-54 factor, RpoN; PFAM: sigma-54 DNA-binding domain protein; sigma-54 factor core-binding region; sigma-54 factor; KEGG: hmo:HM1_1310 RNA polymerase sigma-54 factor YP_003399722.1 PFAM: aminotransferase class I and II; KEGG: shi:Shel_10650 bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities YP_003399723.1 KEGG: kpe:KPK_5051 putative transporter YP_003399724.1 PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: hor:Hore_04570 transcriptional regulator, LacI family YP_003399725.1 KEGG: kpe:KPK_5051 putative transporter YP_003399726.1 PFAM: dihydrodipicolinate synthetase; KEGG: mta:Moth_0631 dihydrodipicolinate synthetase YP_003399727.1 PFAM: metallophosphoesterase; KEGG: bcm:Bcenmc03_6434 metallophosphoesterase YP_003399729.1 PFAM: protein of unknown function DUF554; KEGG: hmo:HM1_0918 hypothetical protein YP_003399730.1 KEGG: ooe:OEOE_0115 chromosome segregation DNA- binding protein; TIGRFAM: parB-like partition protein; PFAM: ParB domain protein nuclease; SMART: ParB domain protein nuclease YP_003399731.1 PFAM: Cobyrinic acid ac-diamide synthase; KEGG: bay:RBAM_038080 hypothetical protein YP_003399732.1 KEGG: cno:NT01CX_0717 peptidase T; TIGRFAM: peptidase T; PFAM: peptidase dimerisation domain protein; peptidase M20 YP_003399734.1 TIGRFAM: methyltransferase GidB; PFAM: glucose inhibited division protein; KEGG: ljo:LJ0554 16S rRNA methyltransferase GidB YP_003399735.1 TIGRFAM: glucose inhibited division protein A; PFAM: glucose-inhibited division protein A; KEGG: drm:Dred_3323 tRNA uridine 5- carboxymethylaminomethyl modification enzyme GidA YP_003399736.1 TIGRFAM: tRNA modification GTPase TrmE; small GTP- binding protein; PFAM: GTP-binding protein TrmE-like; GTP-binding protein HSR1-related; KEGG: pth:PTH_2917 tRNA modification GTPase TrmE YP_003399737.1 PFAM: single-stranded nucleic acid binding R3H domain protein; SMART: single-stranded nucleic acid binding R3H domain protein; KEGG: eel:EUBELI_02066 spoIIIJ-associated protein YP_003399738.1 TIGRFAM: membrane protein insertase, YidC/Oxa1 family; PFAM: 60 kDa inner membrane insertion protein; KEGG: chy:CHY_0004 sporulation associated-membrane protein YP_003399739.1 PFAM: protein of unknown function DUF37; KEGG: fnu:FN0003 alpha-hemolysin YP_003399740.1 TIGRFAM: ribonuclease P protein component; PFAM: ribonuclease P protein; KEGG: amt:Amet_4801 ribonuclease P protein component YP_003399741.1 TIGRFAM: ribosomal protein L34; PFAM: ribosomal protein L34; KEGG: bpy:Bphyt_3989 50S ribosomal protein L34 YP_003399742.1 PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding; KEGG: eel:EUBELI_20019 hypothetical protein YP_003399743.1 TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: bur:Bcep18194_C6529 peptidase M20D, amidohydrolase YP_003399744.1 PFAM: GTP-binding protein HSR1-related; KEGG: similar to immunity-related GTPase family, f1 YP_003399745.1 PFAM: GTP-binding protein HSR1-related; KEGG: similar to LOC616722 protein YP_003399746.1 KEGG: cpy:Cphy_3413 L-asparaginase, type I; TIGRFAM: L-asparaginase, type I; PFAM: Asparaginase/glutaminase YP_003399747.1 PFAM: peptidase M48 Ste24p; KEGG: Mitochondrial metalloendopeptidase OMA1, putative YP_003399748.1 TIGRFAM: xanthine permease; uracil-xanthine permease; PFAM: Xanthine/uracil/vitamin C permease; KEGG: ele:Elen_2967 xanthine permease YP_003399749.1 TIGRFAM: xanthine phosphoribosyltransferase; PFAM: phosphoribosyltransferase; KEGG: ele:Elen_2968 xanthine phosphoribosyltransferase YP_003399750.1 KEGG: ele:Elen_1086 diguanylate cyclase/phosphodiesterase; TIGRFAM: diguanylate cyclase; PFAM: EAL domain protein; GGDEF domain containing protein; SMART: EAL domain protein; GGDEF domain containing protein YP_003399751.1 PFAM: peptidase C26; KEGG: lrl:LC705_01263 glutamine amidotransferase class-I:peptidase C26