-- dump date 20240506_002439 -- class Genbank::Contig -- table contig_comment -- id comment NC_014378.1 REFSEQ INFORMATION: The reference sequence is identical toREFSEQ INFORMATION: The reference sequence is identical to CP002105.1.REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.govREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at theREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ)REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de)REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org)REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANLREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGFREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for theREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by theREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data toREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of thisREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborativeREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis.REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376).REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome AnnotationREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here:REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaeaREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: RussiaREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh waterREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free livingREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, OrganotrophREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: AnaerobeREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: MissingREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: YesREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMPREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit,REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR"REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: MesophileREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37CREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: HalophileREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: NoneREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: FinishedREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPEREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, IlluminaREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START##REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeqREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic GenomeREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP)REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference proteinREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNAREFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318 CDSs (with protein) :: 2,318REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318 CDSs (with protein) :: 2,318 Genes (RNA) :: 86REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318 CDSs (with protein) :: 2,318 Genes (RNA) :: 86 rRNAs :: 5, 5, 5 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318 CDSs (with protein) :: 2,318 Genes (RNA) :: 86 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S)REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318 CDSs (with protein) :: 2,318 Genes (RNA) :: 86 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 67REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318 CDSs (with protein) :: 2,318 Genes (RNA) :: 86 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 67 ncRNAs :: 4REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318 CDSs (with protein) :: 2,318 Genes (RNA) :: 86 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 67 ncRNAs :: 4 Pseudo Genes (total) :: 23REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318 CDSs (with protein) :: 2,318 Genes (RNA) :: 86 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 67 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318 CDSs (with protein) :: 2,318 Genes (RNA) :: 86 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 67 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318 CDSs (with protein) :: 2,318 Genes (RNA) :: 86 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 67 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 4 of 23REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318 CDSs (with protein) :: 2,318 Genes (RNA) :: 86 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 67 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 4 of 23 Pseudo Genes (incomplete) :: 15 of 23REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318 CDSs (with protein) :: 2,318 Genes (RNA) :: 86 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 67 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 4 of 23 Pseudo Genes (incomplete) :: 15 of 23 Pseudo Genes (internal stop) :: 6 of 23REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318 CDSs (with protein) :: 2,318 Genes (RNA) :: 86 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 67 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 4 of 23 Pseudo Genes (incomplete) :: 15 of 23 Pseudo Genes (internal stop) :: 6 of 23 Pseudo Genes (multiple problems) :: 2 of 23REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318 CDSs (with protein) :: 2,318 Genes (RNA) :: 86 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 67 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 4 of 23 Pseudo Genes (incomplete) :: 15 of 23 Pseudo Genes (internal stop) :: 6 of 23 Pseudo Genes (multiple problems) :: 2 of 23 CRISPR Arrays :: 1REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318 CDSs (with protein) :: 2,318 Genes (RNA) :: 86 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 67 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 4 of 23 Pseudo Genes (incomplete) :: 15 of 23 Pseudo Genes (internal stop) :: 6 of 23 Pseudo Genes (multiple problems) :: 2 of 23 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END##REFSEQ INFORMATION: The reference sequence is identical to CP002105.1. URL -- http://www.jgi.doe.gov JGI Project ID: 4085568 Source DNA and organism available from Hans-Peter Klenk at the German Collection of Microorganisms and Cell Cultures (DSMZ) (hans-peter.klenk@dsmz.de) Contacts: Jonathan A. Eisen (jaeisen@ucdavis.edu) David Bruce (microbe@cuba.jgi-psf.org) Whole genome sequencing and draft assembly at JGI-PGF Finishing done by JGI-LANL Annotation by JGI-ORNL and JGI-PGF The JGI and collaborators endorse the principles for the distribution and use of large scale sequencing data adopted by the larger genome sequencing community and urge users of this data to follow them. It is our intention to publish the work of this project in a timely fashion and we welcome collaborative interaction on the project and analysis. (http://www.genome.gov/page.cfm?pageID=10506376). The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/ ##MIGS-Data-START## investigation_type :: bacteria_archaea project_name :: Acetohalobium arabaticum Z-7288, DSM 5501 collection_date :: Missing lat_lon :: Missing depth :: Missing alt_elev :: Missing country :: Russia environment :: Fresh water num_replicons :: 1 ref_biomaterial :: DSM 5501, ATCC 49924 biotic_relationship :: Free living trophic_level :: Chemolithotroph, Methylotroph, Organotroph rel_to_oxygen :: Anaerobe isol_growth_condt :: Missing sequencing_meth :: 454-FLX, 454-Titanium, Illumina assembly :: Newbler v. 2.0.00.20 finishing_strategy :: Finished GOLD Stamp ID :: Gi02906 Type Strain :: Yes Greengenes ID :: 14306 Funding Program :: DOE-GEBA 2007 Gene Calling Method :: Prodigal, GenePRIMP Isolation Site :: "Lagoons from East Crimea, Arabat spit, USSR" Temperature Range :: Mesophile Temperature Optimum :: 37C Salinity :: Halophile Gram Staining :: Gram+ Diseases :: None ##MIGS-Data-END## ##Genome-Assembly-Data-START## Finishing Goal :: Finished Current Finishing Status :: Finished Assembly Method :: Newbler v. 2.0.00.20 Genome Coverage :: 37x 454-TitaniumPE Sequencing Technology :: 454-FLX, 454-Titanium, Illumina ##Genome-Assembly-Data-END## ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Date :: 05/02/2023 01:21:27 Annotation Pipeline :: NCBI Prokaryotic Genome Annotation Pipeline (PGAP) Annotation Method :: Best-placed reference protein set; GeneMarkS-2+ Annotation Software revision :: 6.5 Features Annotated :: Gene; CDS; rRNA; tRNA; ncRNA Genes (total) :: 2,427 CDSs (total) :: 2,341 Genes (coding) :: 2,318 CDSs (with protein) :: 2,318 Genes (RNA) :: 86 rRNAs :: 5, 5, 5 (5S, 16S, 23S) complete rRNAs :: 5, 5, 5 (5S, 16S, 23S) tRNAs :: 67 ncRNAs :: 4 Pseudo Genes (total) :: 23 CDSs (without protein) :: 23 Pseudo Genes (ambiguous residues) :: 0 of 23 Pseudo Genes (frameshifted) :: 4 of 23 Pseudo Genes (incomplete) :: 15 of 23 Pseudo Genes (internal stop) :: 6 of 23 Pseudo Genes (multiple problems) :: 2 of 23 CRISPR Arrays :: 1 ##Genome-Annotation-Data-END## COMPLETENESS: full length.