-- dump date   	20240514_000740
-- class       	Genbank::Feature
-- table       	feature
-- table       	main
-- field 1	id
-- field 2	type
-- field 3	name
-- field 4	contig
-- field 5	start_pos
-- field 6	end_pos
-- field 7	strand
-- field 8	description
-- field 9	chrom_position
-- field 10	organism
-- field 11	GeneID
-- header
-- id	type	name	contig	start_pos	end_pos	strand	description	chrom_position	organism	GeneID
333668000001	SEQ_END	SEQ_END	NC_007344.1	2540030	2540030	DR	NC_007344.1; contig end	2540030..2540030	Theileria parva strain Muguga	<NA>
333668000002	SEQ_END	SEQ_END	NC_007345.1	1971884	1971884	DR	NC_007345.1; contig end	1971884..1971884	Theileria parva strain Muguga	<NA>
333668000003	SEQ_END	SEQ_END	NW_876245.1	1317241	1317241	DR	NW_876245.1; contig end	1317241..1317241	Theileria parva strain Muguga	<NA>
333668000004	SEQ_END	SEQ_END	NW_876244.1	570487	570487	DR	NW_876244.1; contig end	570487..570487	Theileria parva strain Muguga	<NA>
333668000005	SEQ_END	SEQ_END	NW_876243.1	41585	41585	DR	NW_876243.1; contig end	41585..41585	Theileria parva strain Muguga	<NA>
333668000006	SEQ_END	SEQ_END	NW_876242.1	13275	13275	DR	NW_876242.1; contig end	13275..13275	Theileria parva strain Muguga	<NA>
333668000007	SEQ_END	SEQ_END	NW_876247.1	17691	17691	DR	NW_876247.1; contig end	17691..17691	Theileria parva strain Muguga	<NA>
333668000008	SEQ_END	SEQ_END	NW_876246.1	1835834	1835834	DR	NW_876246.1; contig end	1835834..1835834	Theileria parva strain Muguga	<NA>
333668000009	SEQ_END	SEQ_END	NC_007758.1	39579	39579	DR	NC_007758.1; contig end	39579..39579	Theileria parva strain Muguga	<NA>
TpMuguga_01g00001	CDS	TpMuguga_01g00001	NC_007344.1	3039	4658	R	uncharacterized protein	complement(3039..4658)	Theileria parva strain Muguga	3502671
TpMuguga_01g00002	CDS	TpMuguga_01g00002	NC_007344.1	5178	6593	R	uncharacterized protein	complement(5178..6593)	Theileria parva strain Muguga	3502672
TpMuguga_01g00003	CDS	TpMuguga_01g00003	NC_007344.1	7216	17805	R	uncharacterized protein	complement(7216..17805)	Theileria parva strain Muguga	3502673
TpMuguga_01g00004	CDS	TpMuguga_01g00004	NC_007344.1	19259	20668	R	SVSP family protein	complement(19259..20668)	Theileria parva strain Muguga	3503550
TpMuguga_01g00005	CDS	TpMuguga_01g00005	NC_007344.1	20951	21967	R	SVSP family protein	complement(20951..21967)	Theileria parva strain Muguga	3503551
TpMuguga_01g00006	CDS	TpMuguga_01g00006	NC_007344.1	22238	23719	R	SVSP family protein	complement(22238..23719)	Theileria parva strain Muguga	3503552
TpMuguga_01g00007	CDS	TpMuguga_01g00007	NC_007344.1	23958	26808	R	SVSP family protein	complement(join(23958..24937,25287..26808))	Theileria parva strain Muguga	3503553
TpMuguga_01g00008	CDS	TpMuguga_01g00008	NC_007344.1	27041	28600	R	SVSP family protein	complement(27041..28600)	Theileria parva strain Muguga	3503554
TpMuguga_01g00009	CDS	TpMuguga_01g00009	NC_007344.1	28816	30312	R	SVSP family protein	complement(28816..30312)	Theileria parva strain Muguga	3503555
TpMuguga_01g00010	CDS	TpMuguga_01g00010	NC_007344.1	31204	32184	R	uncharacterized protein	complement(31204..32184)	Theileria parva strain Muguga	86047600
TpMuguga_01g00011	CDS	abc3	NC_007344.1	33474	38072	D	ABC transporter	33474..38072	Theileria parva strain Muguga	3503557
TpMuguga_01g00012	CDS	ZBP14	NC_007344.1	38315	38981	R	14 kDa zinc-binding protein	complement(join(38315..38452,38485..38672,38703..38785,38848..38981))	Theileria parva strain Muguga	3502707
TpMuguga_01g00013	CDS	Exosc9	NC_007344.1	39236	40565	R	exosome complex exonuclease Rrp45	complement(join(39236..39272,39340..39440,39469..39564,39719..39854,39886..39953,39986..40090,40122..40370,40401..40565))	Theileria parva strain Muguga	3502708
TpMuguga_01g00014	CDS	TpMuguga_01g00014	NC_007344.1	40846	45297	R	Rhoptry neck protein 2	complement(join(40846..43139,43171..43326,43437..45297))	Theileria parva strain Muguga	3502709
TpMuguga_01g00015	CDS	Tsr1	NC_007344.1	45950	48744	D	Pre-rRNA-processing protein TSR1-like protein	join(45950..46443,46592..46732,46764..47486,47589..47694,47733..47998,48111..48265,48342..48489,48555..48744)	Theileria parva strain Muguga	3502710
TpMuguga_01g00016	CDS	VPS10	NC_007344.1	48868	51687	R	Vacuolar protein sorting/targeting protein 10	complement(join(48868..49160,49296..50286,50398..51687))	Theileria parva strain Muguga	3502711
TpMuguga_01g00017	CDS	TpMuguga_01g00017	NC_007344.1	52672	56084	D	PA14 domain protein	join(52672..52824,52955..53081,53178..53283,53364..53429,53461..53716,53795..54357,54388..54580,54704..54775,54806..55004,55088..55776,55806..55838,55974..56084)	Theileria parva strain Muguga	3503477
TpMuguga_01g00018	CDS	TpMuguga_01g00018	NC_007344.1	56181	56768	D	cwf18 pre-mRNA splicing factor family protein	join(56181..56393,56541..56768)	Theileria parva strain Muguga	3503478
TpMuguga_01g00019	CDS	TpMuguga_01g00019	NC_007344.1	56962	58187	D	uncharacterized protein	join(56962..57751,57823..58187)	Theileria parva strain Muguga	3503479
TpMuguga_01g00020	CDS	TpMuguga_01g00020	NC_007344.1	58357	60101	D	uncharacterized protein	join(58357..58881,58969..59761,59875..60101)	Theileria parva strain Muguga	3503480
TpMuguga_01g02140	CDS	TpMuguga_01g02140	NC_007344.1	60194	67461	R	uncharacterized protein	complement(join(60194..60380,60545..63083,63191..64800,64852..65221,65284..66420,66495..67461))	Theileria parva strain Muguga	3503482
TpMuguga_01g00023	CDS	TpMuguga_01g00023	NC_007344.1	67792	69037	R	uncharacterized protein	complement(join(67792..68455,68526..68715,68857..69037))	Theileria parva strain Muguga	3502622
TpMuguga_01g00024	CDS	iscS	NC_007344.1	69244	70658	R	Cysteine desulfurase	complement(join(69244..69479,69548..70658))	Theileria parva strain Muguga	3502623
TpMuguga_01g02185	CDS	TpMuguga_01g02185	NC_007344.1	71213	71392	R	putative integral membrane protein	complement(71213..71392)	Theileria parva strain Muguga	86047617
TpMuguga_01g02190	CDS	TpMuguga_01g02190	NC_007344.1	71575	72540	R	CS domain protein	complement(join(71575..71712,71790..72284,72316..72540))	Theileria parva strain Muguga	3502624
TpMuguga_01g02180	CDS	TpMuguga_01g02180	NC_007344.1	72537	73025	R	uncharacterized protein	complement(join(72537..72830,72861..73025))	Theileria parva strain Muguga	86047616
TpMuguga_01g00026	CDS	TpMuguga_01g00026	NC_007344.1	73337	75550	D	uncharacterized protein	73337..75550	Theileria parva strain Muguga	3502625
TpMuguga_01g00027	CDS	TpMuguga_01g00027	NC_007344.1	75553	76050	R	uncharacterized protein	complement(75553..76050)	Theileria parva strain Muguga	86047601
TpMuguga_01g00028	CDS	dusA	NC_007344.1	76313	77854	D	Dihydrouridine synthase (Dus)	join(76313..76611,76642..76745,76776..76814,76845..76955,76992..77503,77537..77654,77700..77854)	Theileria parva strain Muguga	3502627
TpMuguga_01g00029	CDS	polr2c	NC_007344.1	78013	79077	D	DNA-directed RNA polymerase II subunit rpb3	78013..79077	Theileria parva strain Muguga	3502628
TpMuguga_01g00030	CDS	alkB	NC_007344.1	79159	80388	D	Alpha-ketoglutarate-dependent dioxygenase alkB	join(79159..79456,79489..79568,79600..79821,79856..79992,80023..80099,80150..80388)	Theileria parva strain Muguga	3502794
TpMuguga_01g00031	CDS	gatB	NC_007344.1	80671	82864	D	GatB/GatE catalytic domain protein	join(80671..82595,82756..82864)	Theileria parva strain Muguga	3502795
TpMuguga_01g02330	CDS	TpMuguga_01g02330	NC_007344.1	82853	84520	R	putative integral membrane protein	complement(82853..84520)	Theileria parva strain Muguga	3502796
TpMuguga_01g02620	CDS	TpMuguga_01g02620	NC_007344.1	84644	87684	R	RAP domain protein	complement(join(84644..84694,84729..84988,85021..85748,85794..87358,87394..87684))	Theileria parva strain Muguga	3502798
TpMuguga_01g00035	CDS	DNAJA1	NC_007344.1	87785	89035	R	chaperone protein DnaJ	complement(join(87785..88061,88131..88297,88328..89035))	Theileria parva strain Muguga	3502799
TpMuguga_01g00036	CDS	ORC2	NC_007344.1	89760	91686	D	Origin recognition complex subunit 2 family protein	join(89760..90301,90337..90497,90527..90594,90622..90749,90780..90900,90934..91053,91084..91196,91226..91378,91410..91539,91571..91629,91659..91686)	Theileria parva strain Muguga	3502800
TpMuguga_01g00037	CDS	papA	NC_007344.1	92095	93705	R	Poly(A) polymerase PAPa	complement(join(92095..92346,92377..92490,92518..92757,92788..93705))	Theileria parva strain Muguga	3503305
TpMuguga_01g00038	CDS	TpMuguga_01g00038	NC_007344.1	94270	95646	D	uncharacterized protein	94270..95646	Theileria parva strain Muguga	3503306
TpMuguga_01g00039	CDS	IMP4	NC_007344.1	95680	96650	R	U3 small nucleolar ribonucleoprotein IMP4	complement(join(95680..96012,96044..96159,96191..96385,96416..96650))	Theileria parva strain Muguga	3503307
TpMuguga_01g00040	CDS	TpMuguga_01g00040	NC_007344.1	96907	98024	R	Exonuclease V - a 5' deoxyribonuclease family protein	complement(join(96907..96987,97022..97342,97374..98024))	Theileria parva strain Muguga	3503308
TpMuguga_01g00041	CDS	RNASEH2A	NC_007344.1	98363	99389	D	ribonuclease HII	join(98363..98441,98475..98588,98623..98749,98779..98866,98901..98978,99011..99146,99178..99389)	Theileria parva strain Muguga	3503309
TpMuguga_01g00042	CDS	TpMuguga_01g00042	NC_007344.1	99410	100874	R	AKAP7 2'5' RNA ligase-like domain protein	complement(join(99410..100347,100378..100710,100748..100874))	Theileria parva strain Muguga	3502989
TpMuguga_01g00043	CDS	HK	NC_007344.1	101324	102781	D	Hexokinase family protein	101324..102781	Theileria parva strain Muguga	3502990
TpMuguga_01g00044	CDS	TpMuguga_01g00044	NC_007344.1	102847	103709	D	uncharacterized protein	join(102847..103108,103144..103402,103433..103709)	Theileria parva strain Muguga	3502991
TpMuguga_01g00045	CDS	HK	NC_007344.1	104160	105617	D	Hexokinase family protein	104160..105617	Theileria parva strain Muguga	3502992
TpMuguga_01g00046	CDS	TpMuguga_01g00046	NC_007344.1	105737	106140	R	uncharacterized protein	complement(join(105737..106000,106033..106140))	Theileria parva strain Muguga	3502993
TpMuguga_01g00047	CDS	TpMuguga_01g00047	NC_007344.1	106425	107298	D	uncharacterized protein	join(106425..106527,106579..106602,106648..106703,106739..106755,106784..106861,106891..106940,106972..107002,107032..107107,107138..107227,107257..107298)	Theileria parva strain Muguga	3502994
TpMuguga_01g00048	CDS	TpMuguga_01g00048	NC_007344.1	107316	109170	R	uncharacterized protein	complement(join(107316..107418,107448..107611,107642..107797,107828..107924,107954..108021,108051..108176,108208..108302,108332..108476,108508..108827,108859..109054,109087..109170))	Theileria parva strain Muguga	3502995
TpMuguga_01g02170	CDS	ACBP5	NC_007344.1	109630	111415	D	Galactose oxidase central domain protein	join(109630..109732,109771..109842,109886..110065,110101..110225,110258..110363,110395..110444,110474..110516,110549..110567,110598..110668,110697..110778,110808..110911,110943..111056,111105..111171,111202..111415)	Theileria parva strain Muguga	3502617
TpMuguga_01g00051	CDS	TpMuguga_01g00051	NC_007344.1	111412	113295	R	Sin-like protein conserved region family protein	complement(111412..113295)	Theileria parva strain Muguga	3502618
TpMuguga_01g02605	CDS	TpMuguga_01g02605	NC_007344.1	113664	114993	D	uncharacterized protein	join(113664..113720,113754..114024,114056..114414,114445..114534,114568..114798,114832..114993)	Theileria parva strain Muguga	3502619
TpMuguga_01g02230	CDS	TpMuguga_01g02230	NC_007344.1	115239	116981	D	uncharacterized protein	115239..116981	Theileria parva strain Muguga	86047620
TpMuguga_01g00053	CDS	opa3	NC_007344.1	117240	117698	R	Optic atrophy 3 protein (OPA3) family protein	complement(117240..117698)	Theileria parva strain Muguga	3502620
TpMuguga_01g00054	CDS	yqeH	NC_007344.1	117729	119920	R	50S ribosome-binding GTPase family protein	complement(join(117729..117804,117840..117902,117933..118064,118096..118200,118232..118570,118602..118740,118771..118853,118885..118940,118973..119311,119342..119407,119439..119515,119561..119669,119705..119830,119864..119920))	Theileria parva strain Muguga	3502621
TpMuguga_01g00055	CDS	DBP5	NC_007344.1	119979	121812	R	DEAD/DEAH box helicase family protein	complement(join(119979..120048,120078..120193,120227..120464,120498..120679,120710..120898,120932..121017,121049..121163,121198..121297,121330..121491,121532..121589,121623..121812))	Theileria parva strain Muguga	3502610
TpMuguga_01g00056	CDS	TpMuguga_01g00056	NC_007344.1	122649	123173	D	Tp2	122649..123173	Theileria parva strain Muguga	3502611
TpMuguga_01g00057	CDS	TpMuguga_01g00057	NC_007344.1	124239	125139	D	putative integral membrane protein	join(124239..124688,124723..124847,124878..124998,125029..125139)	Theileria parva strain Muguga	3502612
TpMuguga_01g00058	CDS	TpMuguga_01g00058	NC_007344.1	125246	126265	R	uncharacterized protein	complement(125246..126265)	Theileria parva strain Muguga	3502613
TpMuguga_01g00059	CDS	TpMuguga_01g00059	NC_007344.1	126387	128114	R	uncharacterized protein	complement(126387..128114)	Theileria parva strain Muguga	3502614
TpMuguga_01g00060	CDS	TpMuguga_01g00060	NC_007344.1	128148	128616	R	uncharacterized protein	complement(join(128148..128278,128349..128616))	Theileria parva strain Muguga	3502615
TpMuguga_01g00061	CDS	TpMuguga_01g00061	NC_007344.1	128812	130390	D	uncharacterized protein	join(128812..129014,129044..129145,129178..129265,129302..129403,129434..129636,129666..129903,129932..130390)	Theileria parva strain Muguga	3502575
TpMuguga_01g00062	CDS	TpMuguga_01g00062	NC_007344.1	130441	130928	R	NifU-like domain protein	complement(join(130441..130572,130608..130928))	Theileria parva strain Muguga	3502576
TpMuguga_01g00063	CDS	TpMuguga_01g00063	NC_007344.1	131136	132770	D	uncharacterized protein	join(131136..131346,131388..131541,131577..131731,131768..131847,131883..132006,132037..132185,132218..132515,132549..132626,132688..132770)	Theileria parva strain Muguga	3502577
TpMuguga_01g00064	CDS	ILKAP	NC_007344.1	132857	134131	D	Protein phosphatase 2C family protein	join(132857..132959,133022..133148,133216..133541,133605..133737,133791..133944,133985..134131)	Theileria parva strain Muguga	3502578
TpMuguga_01g00065	CDS	Adck3	NC_007344.1	134287	136540	R	ABC1 family protein	complement(join(134287..134463,134495..134553,134619..134721,134752..134816,134892..134961,135014..135103,135145..135459,135512..135598,135629..135753,135788..135872,135903..135961,136025..136087,136120..136540))	Theileria parva strain Muguga	3502579
TpMuguga_01g00066	CDS	rpmG	NC_007344.1	136704	137038	D	Ribosomal protein L33 family protein	join(136704..136809,136842..137038)	Theileria parva strain Muguga	3502693
TpMuguga_01g00067	CDS	DBI	NC_007344.1	137230	137496	D	uncharacterized protein	137230..137496	Theileria parva strain Muguga	3502694
TpMuguga_01g00068	CDS	TpMuguga_01g00068	NC_007344.1	138850	141345	D	AP2 domain protein	138850..141345	Theileria parva strain Muguga	3502695
TpMuguga_01g02310	CDS	JMJ14	NC_007344.1	143159	145856	D	hydroxylase JmjC domain protein	join(143159..143404,143448..143562,143601..143725,143772..143922,143952..144137,144169..144472,144545..144679,144749..144816,144847..144960,145032..145169,145199..145353,145467..145856)	Theileria parva strain Muguga	3502697
TpMuguga_01g00071	CDS	TpMuguga_01g00071	NC_007344.1	145930	146286	R	uncharacterized protein	complement(join(145930..145961,146001..146057,146087..146238,146270..146286))	Theileria parva strain Muguga	3502698
TpMuguga_01g00072	CDS	KPNB1	NC_007344.1	147550	150345	D	HEAT repeat family protein	join(147550..149050,149158..150109,150177..150345)	Theileria parva strain Muguga	3502699
TpMuguga_01g00073	CDS	URA5	NC_007344.1	150403	151096	R	orotate phosphoribosyltransferase	complement(join(150403..150497,150536..150812,150851..151096))	Theileria parva strain Muguga	3502844
TpMuguga_01g00074	CDS	TpMuguga_01g00074	NC_007344.1	151358	154090	D	uncharacterized protein	151358..154090	Theileria parva strain Muguga	3502845
TpMuguga_01g00075	CDS	TpMuguga_01g00075	NC_007344.1	154231	154932	D	uncharacterized protein	join(154231..154398,154444..154549,154652..154932)	Theileria parva strain Muguga	3502846
TpMuguga_01g00076	CDS	Nsun2	NC_007344.1	154971	157269	R	NOL1/NOP2/sun family protein	complement(join(154971..155638,155693..155984,156056..156118,156172..156359,156412..156513,156550..156627,156657..157269))	Theileria parva strain Muguga	3502847
TpMuguga_01g00077	CDS	TpMuguga_01g00077	NC_007344.1	157477	158365	D	uncharacterized protein	join(157477..157741,157814..157951,157983..158135,158178..158365)	Theileria parva strain Muguga	3502848
TpMuguga_01g00078	CDS	UPL4	NC_007344.1	158318	163830	R	HECT-domain (ubiquitin-transferase) family protein	complement(join(158318..158480,158533..158828,158869..158978,159101..163661,163699..163830))	Theileria parva strain Muguga	3502849
TpMuguga_01g00079	CDS	TpMuguga_01g00079	NC_007344.1	164326	164622	D	putative integral membrane protein	join(164326..164403,164554..164622)	Theileria parva strain Muguga	3503021
TpMuguga_01g00080	CDS	TpMuguga_01g00080	NC_007344.1	165032	165462	D	uncharacterized protein	join(165032..165113,165150..165239,165275..165462)	Theileria parva strain Muguga	3503022
TpMuguga_01g00081	CDS	TpMuguga_01g00081	NC_007344.1	165556	166098	R	putative integral membrane protein	complement(165556..166098)	Theileria parva strain Muguga	3503023
TpMuguga_01g00082	CDS	TpMuguga_01g00082	NC_007344.1	167299	167881	D	uncharacterized protein	join(167299..167545,167583..167699,167739..167804,167835..167881)	Theileria parva strain Muguga	3503024
TpMuguga_01g00083	CDS	TpMuguga_01g00083	NC_007344.1	167930	168761	R	uncharacterized protein	complement(join(167930..168076,168154..168297,168354..168761))	Theileria parva strain Muguga	3503025
TpMuguga_01g00084	CDS	B'GAMMA	NC_007344.1	168873	171364	R	Serine/threonine protein phosphatase 2A 57 kDa regulatory subunit B' theta isoform domain protein	complement(join(168873..168963,169123..170351,170416..171328,171360..171364))	Theileria parva strain Muguga	3503026
TpMuguga_01g00085	CDS	TpMuguga_01g00085	NC_007344.1	172385	173258	D	putative integral membrane protein	join(172385..172478,172518..172579,172609..172674,172742..172829,172859..172944,172986..173258)	Theileria parva strain Muguga	3503417
TpMuguga_01g00086	CDS	celf1	NC_007344.1	173342	174429	R	or RNP domain; RBD; RRM; RNA recognition motif family protein	complement(join(173342..173463,173499..173654,173744..174040,174147..174429))	Theileria parva strain Muguga	3503418
TpMuguga_01g00087	CDS	Xab2	NC_007344.1	174794	177538	D	Pre-mRNA-splicing factor SYF1	join(174794..175665,175736..175913,175974..176074,176114..177254,177350..177538)	Theileria parva strain Muguga	3503419
TpMuguga_01g00088	CDS	TpMuguga_01g00088	NC_007344.1	177557	179500	R	uncharacterized protein	complement(177557..179500)	Theileria parva strain Muguga	3503420
TpMuguga_01g02570	CDS	TpMuguga_01g02570	NC_007344.1	180050	182677	R	uncharacterized protein	complement(join(180050..181346,181467..182677))	Theileria parva strain Muguga	3503421
TpMuguga_01g00091	CDS	Pnkp	NC_007344.1	182935	184700	D	Polynucleotide kinase 3 phosphatase family protein	join(182935..183018,183049..183266,183312..183382,183413..183439,183512..183539,183570..183598,183628..183978,184056..184219,184250..184456,184506..184700)	Theileria parva strain Muguga	3503398
TpMuguga_01g00092	CDS	TpMuguga_01g00092	NC_007344.1	184822	193265	R	uncharacterized protein	complement(join(184822..185306,185379..185834,186026..186646,186741..187233,187403..190290,190385..193265))	Theileria parva strain Muguga	3503399
TpMuguga_01g00093	CDS	TpMuguga_01g00093	NC_007344.1	193898	194686	R	putative integral membrane protein	complement(193898..194686)	Theileria parva strain Muguga	3503400
TpMuguga_01g00094	CDS	TpMuguga_01g00094	NC_007344.1	195163	195681	D	Iron-sulfur cluster assembly family protein	195163..195681	Theileria parva strain Muguga	3503401
TpMuguga_01g00095	CDS	TpMuguga_01g00095	NC_007344.1	195835	196596	R	uncharacterized protein	complement(195835..196596)	Theileria parva strain Muguga	3503402
TpMuguga_01g00096	CDS	TpMuguga_01g00096	NC_007344.1	196840	197772	R	putative integral membrane protein	complement(join(196840..197016,197099..197152,197221..197531,197562..197619,197653..197772))	Theileria parva strain Muguga	3503191
TpMuguga_01g00097	CDS	TpMuguga_01g00097	NC_007344.1	197894	198790	R	putative integral membrane protein	complement(join(197894..198002,198040..198127,198203..198247,198306..198338,198370..198414,198444..198506,198600..198663,198695..198790))	Theileria parva strain Muguga	3503192
TpMuguga_01g00098	CDS	TpMuguga_01g00098	NC_007344.1	198859	201270	R	uncharacterized protein	complement(198859..201270)	Theileria parva strain Muguga	3503193
TpMuguga_01g00099	CDS	Sec24a	NC_007344.1	201664	205011	R	Sec23/Sec24 trunk domain protein	complement(join(201664..202055,202126..202596,202686..202946,203015..203321,203385..203453,203502..203696,203801..204150,204211..204447,204497..204670,204739..204795,204825..205011))	Theileria parva strain Muguga	3503194
TpMuguga_01g00100	CDS	PRMT5	NC_007344.1	205644	207752	D	PRMT5 arginine-N-methyltransferase family protein	205644..207752	Theileria parva strain Muguga	3503195
TpMuguga_01g00101	CDS	fba	NC_007344.1	208223	209356	D	Fructose-bisphosphate aldolase	208223..209356	Theileria parva strain Muguga	3503196
TpMuguga_01g00102	CDS	TpMuguga_01g00102	NC_007344.1	209489	210225	D	prefoldin subunit alpha	join(209489..209599,209685..209826,209919..210012,210078..210225)	Theileria parva strain Muguga	3503185
TpMuguga_01g00103	CDS	DHX35	NC_007344.1	210590	213237	D	Oligonucleotide/oligosaccharide-binding (OB)-fold family protein	join(210590..210842,210978..211421,211481..211908,211968..212270,212364..212830,212925..213068,213168..213237)	Theileria parva strain Muguga	3503186
TpMuguga_01g00104	CDS	COX11	NC_007344.1	213402	214459	D	Cytochrome c oxidase assembly protein CtaG/Cox11 family protein	join(213402..213834,213909..214061,214091..214183,214215..214280,214347..214459)	Theileria parva strain Muguga	3503187
TpMuguga_01g00105	CDS	TpMuguga_01g00105	NC_007344.1	214551	215335	R	putative integral membrane protein	complement(join(214551..214634,214695..214748,214801..214926,215015..215152,215270..215335))	Theileria parva strain Muguga	3503188
TpMuguga_01g00106	CDS	TpMuguga_01g00106	NC_007344.1	216016	217803	R	uncharacterized protein	complement(join(216016..217015,217060..217562,217594..217803))	Theileria parva strain Muguga	3503189
TpMuguga_01g00107	CDS	Kin	NC_007344.1	218190	219658	D	Domain of Kin17 curved DNA-binding family protein	join(218190..218315,218375..218496,218549..218985,219051..219291,219350..219422,219471..219576,219609..219658)	Theileria parva strain Muguga	3503190
TpMuguga_01g02240	CDS	TpMuguga_01g02240	NC_007344.1	219682	221014	R	Ribosomal protein L22p/L17e family protein	complement(join(219682..219736,219766..219801,219830..219882,219939..220058,220108..220208,220280..220400,220456..220536,220568..220657,220688..220778,220843..220903,220936..221014))	Theileria parva strain Muguga	86047622
TpMuguga_01g00108	CDS	TpMuguga_01g00108	NC_007344.1	221205	221989	R	uncharacterized protein	complement(join(221205..221414,221530..221604,221714..221769,221887..221989))	Theileria parva strain Muguga	3502749
TpMuguga_01g00109	CDS	TpMuguga_01g00109	NC_007344.1	222218	223493	R	uncharacterized protein	complement(join(222218..222286,222338..222607,222641..222730,222807..223056,223125..223207,223247..223351,223389..223493))	Theileria parva strain Muguga	3502750
TpMuguga_01g00110	CDS	TpMuguga_01g00110	NC_007344.1	223962	227024	D	SPOC domain protein	join(223962..224034,224113..227024)	Theileria parva strain Muguga	3502751
TpMuguga_01g00111	CDS	TpMuguga_01g00111	NC_007344.1	227324	230380	R	uncharacterized protein	complement(227324..230380)	Theileria parva strain Muguga	3502752
TpMuguga_01g00112	CDS	TpMuguga_01g00112	NC_007344.1	230709	231229	R	uncharacterized protein	complement(join(230709..230845,230880..230952,231023..231229))	Theileria parva strain Muguga	3502753
TpMuguga_01g00113	CDS	rsmH	NC_007344.1	231330	232800	D	MraW methylase family protein	join(231330..231671,231702..232103,232143..232238,232293..232406,232458..232652,232681..232724,232755..232800)	Theileria parva strain Muguga	3502754
TpMuguga_01g00114	CDS	PIN1	NC_007344.1	232861	233211	R	Peptidyl-prolyl cis-trans isomerase NIMA-interacting 1	complement(232861..233211)	Theileria parva strain Muguga	3502441
TpMuguga_01g00115	CDS	Igbp1	NC_007344.1	233570	235099	D	TAP42-like family protein	join(233570..233762,233818..234095,234139..234381,234411..234570,234604..234671,234735..234792,234822..234876,234906..234966,234995..235099)	Theileria parva strain Muguga	3502442
TpMuguga_01g02110	CDS	rnz	NC_007344.1	235150	238615	R	Beta-lactamase superfamily protein	complement(join(235150..235225,235284..235348,235454..235581,235681..238615))	Theileria parva strain Muguga	3502443
TpMuguga_01g00118	CDS	alg7	NC_007344.1	238780	240345	R	Glycosyl transferase family 4 protein	complement(join(238780..238890,238920..238986,239052..239092,239122..239223,239274..239387,239419..239463,239503..239570,239599..239757,239788..239848,239878..239928,239958..240088,240117..240345))	Theileria parva strain Muguga	3502445
TpMuguga_01g00119	CDS	LACS7	NC_007344.1	240948	243868	D	AMP-binding enzyme family protein	join(240948..241014,241044..241119,241151..241265,241295..241529,241558..241739,241954..242101,242138..242271,242301..242510,242791..243462,243668..243868)	Theileria parva strain Muguga	3502464
TpMuguga_01g02070	CDS	smc6	NC_007344.1	244025	248671	D	RecF/RecN/SMC N terminal domain protein	join(244025..244106,244177..244293,244330..244450,244558..244644,244675..244783,244838..244945,244975..245393,245433..245508,245552..245599,245692..245802,245832..245939,245981..246056,246116..246237,246405..247034,247111..247305,247426..247560,247590..247742,247828..247980,248012..248088,248126..248195,248225..248284,248394..248464,248505..248596,248625..248671)	Theileria parva strain Muguga	3502467
TpMuguga_01g00124	CDS	TpMuguga_01g00124	NC_007344.1	248809	249951	R	uncharacterized protein	complement(join(248809..249462,249539..249690,249720..249951))	Theileria parva strain Muguga	3502469
TpMuguga_01g00125	CDS	TYW1	NC_007344.1	251177	253723	R	S-adenosyl-L-methionine-dependent tRNA 4-demethylwyosine synthase	complement(join(251177..251216,251247..251350,251381..251438,251815..251924,251953..252093,252124..252239,252270..252372,252430..252798,252863..253723))	Theileria parva strain Muguga	3502479
TpMuguga_01g00126	CDS	rpoA	NC_007344.1	253902	257038	D	RNA polymerase Rpb3/RpoA insert domain protein	join(253902..254373,254408..254523,254616..254868,254976..255175,255487..255700,255782..255944,256043..256221,256346..256539,256696..256881,256910..257038)	Theileria parva strain Muguga	3502480
TpMuguga_01g00127	CDS	UBA2	NC_007344.1	257838	260118	R	ThiF family protein	complement(join(257838..258248,258415..259217,259746..260118))	Theileria parva strain Muguga	3502481
TpMuguga_01g00128	CDS	ADA2A	NC_007344.1	260734	263452	D	Transcriptional adapter ADA2a	join(260734..260906,261419..261657,261719..261786,261959..262126,262247..263452)	Theileria parva strain Muguga	3502411
TpMuguga_01g00129	CDS	PDIA4	NC_007344.1	263881	266103	R	Protein disulfide-isomerase A4	complement(join(263881..264074,264211..264335,264443..264621,264823..265275,265362..265730,265815..265970,266020..266103))	Theileria parva strain Muguga	3502412
TpMuguga_01g00130	CDS	CSTF3	NC_007344.1	266408	270308	D	Suppressor of forked protein (Suf) family protein	join(266408..266596,266860..267016,267046..267131,267384..267509,267539..267682,267787..267933,268021..268291,268345..268392,268422..268877,268953..269971,270115..270183,270255..270308)	Theileria parva strain Muguga	3502413
TpMuguga_01g00131	CDS	TpMuguga_01g00131	NC_007344.1	270395	271864	R	uncharacterized protein	complement(270395..271864)	Theileria parva strain Muguga	3502414
TpMuguga_01g00132	CDS	TpMuguga_01g00132	NC_007344.1	272546	274214	D	uncharacterized protein	join(272546..272764,272823..273366,273411..273525,273560..273612,273642..274084,274116..274214)	Theileria parva strain Muguga	3502415
TpMuguga_01g00133	CDS	TpMuguga_01g00133	NC_007344.1	274403	275623	R	uncharacterized protein	complement(274403..275623)	Theileria parva strain Muguga	3502512
TpMuguga_01g02765	CDS	TpMuguga_01g02765	NC_007344.1	276011	276319	R	uncharacterized protein	complement(276011..276319)	Theileria parva strain Muguga	86047656
TpMuguga_01g00135	CDS	TpMuguga_01g00135	NC_007344.1	276893	277540	R	uncharacterized protein	complement(276893..277540)	Theileria parva strain Muguga	3502514
TpMuguga_01g00136	CDS	ACAP3	NC_007344.1	277901	279152	D	putative GTPase activating protein for Arf family protein	join(277901..278110,278283..278377,278408..278496,278538..278619,278651..279034,279101..279152)	Theileria parva strain Muguga	3502515
TpMuguga_01g00137	CDS	TpMuguga_01g00137	NC_007344.1	279278	279955	R	Inner membrane complex family protein	complement(join(279278..279670,279806..279955))	Theileria parva strain Muguga	3502516
TpMuguga_01g00138	CDS	TpMuguga_01g00138	NC_007344.1	280432	280968	R	Ribosomal L32p family protein	complement(join(280432..280581,280618..280968))	Theileria parva strain Muguga	3502517
TpMuguga_01g00139	CDS	TpMuguga_01g00139	NC_007344.1	281331	282913	D	SpoU rRNA Methylase family protein	join(281331..281472,281505..282111,282160..282292,282375..282417,282472..282643,282808..282913)	Theileria parva strain Muguga	3502518
TpMuguga_01g00140	CDS	TpMuguga_01g00140	NC_007344.1	282953	284337	D	WD domain G-beta repeat protein	join(282953..283042,283128..283283,283409..284188,284284..284337)	Theileria parva strain Muguga	3502635
TpMuguga_01g02465	CDS	MSI2	NC_007344.1	284648	286458	D	WD domain G-beta repeat protein	join(284648..284760,284792..284882,284915..285060,285244..285299,285331..285378,285410..285452,285486..285568,285618..285729,285760..285793,285862..285945,285974..286273,286337..286384,286414..286458)	Theileria parva strain Muguga	3502637
TpMuguga_01g00143	CDS	TpMuguga_01g00143	NC_007344.1	286532	289021	R	putative integral membrane protein	complement(286532..289021)	Theileria parva strain Muguga	3502638
TpMuguga_01g00144	CDS	TpMuguga_01g00144	NC_007344.1	289429	293085	R	putative integral membrane protein	complement(289429..293085)	Theileria parva strain Muguga	3502639
TpMuguga_01g00145	CDS	hisS	NC_007344.1	293446	296477	R	Histidyl-tRNA synthetase	complement(join(293446..293645,293703..295347,295399..295544,295587..295722,295773..296477))	Theileria parva strain Muguga	3502640
TpMuguga_01g02200	CDS	mak5	NC_007344.1	296612	298927	D	DEAD/DEAH box helicase family protein	join(296612..297052,297119..297547,297604..297813,297875..297987,298017..298157,298222..298379,298437..298559,298630..298682,298722..298868,298898..298927)	Theileria parva strain Muguga	3502801
TpMuguga_01g02375	CDS	TpMuguga_01g02375	NC_007344.1	299148	299864	D	Serine hydrolase (FSH1) family protein	299148..299864	Theileria parva strain Muguga	86047630
TpMuguga_01g00148	CDS	TpMuguga_01g00148	NC_007344.1	299909	301744	D	Mitochondrial ribosomal death-associated protein 3 family protein	join(299909..300254,300324..300493,300525..300656,300706..300909,300947..301020,301057..301196,301234..301374,301435..301507,301537..301667,301698..301744)	Theileria parva strain Muguga	3502803
TpMuguga_01g00149	CDS	AFC3	NC_007344.1	301814	303827	R	Protein kinase domain protein	complement(join(301814..301948,302013..302073,302130..302227,302263..302378,302469..302601,302691..303827))	Theileria parva strain Muguga	3502804
TpMuguga_01g00150	CDS	TpMuguga_01g00150	NC_007344.1	303917	305413	D	uncharacterized protein	join(303917..304017,304057..304142,304171..304296,304335..304484,304572..304660,304692..304748,304782..304865,304905..304979,305010..305080,305110..305235,305335..305413)	Theileria parva strain Muguga	3502805
TpMuguga_01g02590	CDS	TpMuguga_01g02590	NC_007344.1	305410	305754	R	uncharacterized protein	complement(305410..305754)	Theileria parva strain Muguga	86047645
TpMuguga_01g02625	CDS	TpMuguga_01g02625	NC_007344.1	305956	306638	R	Sas10/Utp3/C1D family protein	complement(join(305956..306023,306090..306138,306172..306227,306340..306399,306458..306638))	Theileria parva strain Muguga	86047647
TpMuguga_01g00151	CDS	TpMuguga_01g00151	NC_007344.1	306760	309034	D	Insulinase (Peptidase family M16) family protein	join(306760..306976,307011..307162,307226..307317,307390..307570,307601..307636,307741..307821,307852..307920,308045..308252,308340..308533,308659..308868,308948..309034)	Theileria parva strain Muguga	3502885
TpMuguga_01g00152	CDS	TpMuguga_01g00152	NC_007344.1	309189	311801	R	Spc97 / Spc98 family protein	complement(309189..311801)	Theileria parva strain Muguga	3502886
TpMuguga_01g00153	CDS	TpMuguga_01g00153	NC_007344.1	312143	314968	R	uncharacterized protein	complement(join(312143..314646,314761..314968))	Theileria parva strain Muguga	3502887
TpMuguga_01g00154	CDS	TpMuguga_01g00154	NC_007344.1	315644	315946	D	uncharacterized protein	315644..315946	Theileria parva strain Muguga	3502888
TpMuguga_01g00155	CDS	UVH6	NC_007344.1	316633	320019	R	DNA repair helicase (rad3) family protein	complement(join(316633..316986,317097..317934,318002..318683,318866..319090,319212..319307,319339..319665,319878..320019))	Theileria parva strain Muguga	3502889
TpMuguga_01g00156	CDS	TpMuguga_01g00156	NC_007344.1	320342	321582	R	UBX domain protein	complement(join(320342..321064,321182..321295,321397..321582))	Theileria parva strain Muguga	3502890
TpMuguga_01g00157	CDS	TpMuguga_01g00157	NC_007344.1	322688	325408	D	ARID/BRIGHT DNA binding domain protein	join(322688..323055,323191..325408)	Theileria parva strain Muguga	3502903
TpMuguga_01g00158	CDS	RSPH10B2	NC_007344.1	325552	327380	R	MORN repeat family protein	complement(join(325552..325775,325906..325974,326122..326300,326386..326482,326641..326931,327092..327380))	Theileria parva strain Muguga	3502904
TpMuguga_01g00159	CDS	TpMuguga_01g00159	NC_007344.1	327928	328540	D	uncharacterized protein	join(327928..328046,328125..328146,328184..328222,328252..328389,328469..328540)	Theileria parva strain Muguga	3502905
TpMuguga_01g00160	CDS	MPP10	NC_007344.1	328589	330319	R	Mpp10 family protein	complement(328589..330319)	Theileria parva strain Muguga	3502906
TpMuguga_01g00161	CDS	serS	NC_007344.1	330550	332421	D	Serine--tRNA ligase	join(330550..330709,330743..332164,332246..332421)	Theileria parva strain Muguga	3502907
TpMuguga_01g00162	CDS	TpMuguga_01g00162	NC_007344.1	332423	333582	D	putative integral membrane protein	join(332423..332654,332821..332894,332965..333015,333049..333124,333260..333368,333428..333471,333521..333582)	Theileria parva strain Muguga	3502908
TpMuguga_01g00163	CDS	SRP19	NC_007344.1	333730	334364	D	SRP19 family protein	join(333730..333909,334125..334212,334243..334364)	Theileria parva strain Muguga	3502937
TpMuguga_01g00164	CDS	TpMuguga_01g00164	NC_007344.1	334420	339031	R	MAC/Perforin domain protein	complement(join(334420..334589,334684..334792,334942..335139,335269..335553,335676..336503,336612..337777,337874..337951,338065..338382,338505..338690,338821..339031))	Theileria parva strain Muguga	3502938
TpMuguga_01g00165	CDS	TpMuguga_01g00165	NC_007344.1	339915	341711	D	putative integral membrane protein	join(339915..340124,340347..341711)	Theileria parva strain Muguga	3502939
TpMuguga_01g00166	CDS	proRS	NC_007344.1	341799	344925	R	proline--tRNA ligase	complement(join(341799..341933,342028..342088,342331..342882,343025..343204,343331..343704,343817..343936,344016..344319,344445..344584,344647..344784,344863..344925))	Theileria parva strain Muguga	3502940
TpMuguga_01g00167	CDS	tif225	NC_007344.1	345166	347222	R	putative translation initiation factor eIF-2B subunit epsilon	complement(join(345166..346663,346702..346823,346893..347222))	Theileria parva strain Muguga	3502941
TpMuguga_01g00168	CDS	TpMuguga_01g00168	NC_007344.1	347304	347803	R	uncharacterized protein	complement(join(347304..347466,347568..347803))	Theileria parva strain Muguga	3502971
TpMuguga_01g02120	CDS	LAS21	NC_007344.1	347976	352338	D	putative integral membrane protein	join(347976..348298,348405..348705,348809..348896,348995..349127,349245..349461,349557..351958,352075..352147,352237..352338)	Theileria parva strain Muguga	3502972
TpMuguga_01g00171	CDS	BET2	NC_007344.1	352445	353844	R	Geranylgeranyl transferase type-2 subunit beta	complement(join(352445..352793,352913..353844))	Theileria parva strain Muguga	3502974
TpMuguga_01g00172	CDS	TpMuguga_01g00172	NC_007344.1	354001	354780	D	uncharacterized protein	join(354001..354130,354200..354291,354323..354344,354459..354585,354684..354780)	Theileria parva strain Muguga	3502975
TpMuguga_01g00173	CDS	fdx1l	NC_007344.1	354865	355714	R	Adrenodoxin-like protein	complement(join(354865..354979,355087..355216,355409..355467,355611..355714))	Theileria parva strain Muguga	3502976
TpMuguga_01g00174	CDS	TpMuguga_01g00174	NC_007344.1	355889	356487	D	uncharacterized protein	join(355889..356044,356117..356189,356261..356487)	Theileria parva strain Muguga	3503052
TpMuguga_01g00175	CDS	TpMuguga_01g00175	NC_007344.1	356546	357439	D	uncharacterized protein	join(356546..356749,356920..356939,356971..357008,357099..357127,357157..357213,357332..357439)	Theileria parva strain Muguga	3503053
TpMuguga_01g00176	CDS	TpMuguga_01g00176	NC_007344.1	357576	358804	D	putative integral membrane protein	join(357576..357773,357846..357959,358095..358298,358449..358607,358724..358804)	Theileria parva strain Muguga	3503054
TpMuguga_01g00177	CDS	BAS1	NC_007344.1	358981	359781	D	AhpC/TSA family protein	358981..359781	Theileria parva strain Muguga	3503055
TpMuguga_01g00178	CDS	TpMuguga_01g00178	NC_007344.1	360578	362950	D	uncharacterized protein	360578..362950	Theileria parva strain Muguga	3503056
TpMuguga_01g00179	CDS	TpMuguga_01g00179	NC_007344.1	363137	365583	D	uncharacterized protein	join(363137..363695,363844..364033,364067..364500,364619..365583)	Theileria parva strain Muguga	3503057
TpMuguga_01g00180	CDS	TpMuguga_01g00180	NC_007344.1	365878	366585	R	Ribosomal protein S11 family protein	complement(365878..366585)	Theileria parva strain Muguga	3503058
TpMuguga_01g00181	CDS	TpMuguga_01g00181	NC_007344.1	366688	367336	R	Dip2/Utp12 family protein	complement(join(366688..367142,367327..367336))	Theileria parva strain Muguga	3503222
TpMuguga_01g00182	CDS	TpMuguga_01g00182	NC_007344.1	368076	369679	D	CTLH/CRA C-terminal to LisH motif domain protein	join(368076..368152,368264..368397,368750..368856,368989..369057,369131..369193,369224..369283,369396..369495,369525..369586,369617..369679)	Theileria parva strain Muguga	3503223
TpMuguga_01g00183	CDS	TpMuguga_01g00183	NC_007344.1	369899	370600	R	Utp11 family protein	complement(369899..370600)	Theileria parva strain Muguga	3503224
TpMuguga_01g00184	CDS	TpMuguga_01g00184	NC_007344.1	370658	371123	R	tRNA intron endonuclease catalytic domain protein	complement(join(370658..370757,370859..370897,370981..371123))	Theileria parva strain Muguga	3503225
TpMuguga_01g00185	CDS	Msh6	NC_007344.1	371416	375902	R	MutS domain V family protein	complement(join(371416..371794,371968..372080,372186..372310,372471..373004,373131..375393,375595..375837,375870..375902))	Theileria parva strain Muguga	3503226
TpMuguga_01g00186	CDS	TpMuguga_01g00186	NC_007344.1	376063	379267	R	SRP72 RNA-binding domain protein	complement(join(376063..376084,376174..376302,376418..376522,376554..376611,376783..377002,377031..377306,377440..377574,377654..377744,377869..377928,378029..378191,378306..379052,379156..379267))	Theileria parva strain Muguga	3503227
TpMuguga_01g00187	CDS	PBD1	NC_007344.1	379772	380481	D	Proteasome subunit beta type-2-A	join(379772..380098,380170..380481)	Theileria parva strain Muguga	3503249
TpMuguga_01g00188	CDS	phb2	NC_007344.1	380640	381687	R	Prohibitin 2 Tp6	complement(join(380640..381364,381579..381687))	Theileria parva strain Muguga	3503250
TpMuguga_01g00189	CDS	NAPEPLD	NC_007344.1	381764	382551	R	Beta-lactamase superfamily protein	complement(join(381764..382452,382485..382551))	Theileria parva strain Muguga	3503251
TpMuguga_01g00190	CDS	groS	NC_007344.1	383102	383484	D	Chaperonin 10 Kd subunit family protein	join(383102..383104,383138..383263,383314..383484)	Theileria parva strain Muguga	3503252
TpMuguga_01g00191	CDS	TpMuguga_01g00191	NC_007344.1	383528	384581	R	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein	complement(join(383528..383591,383622..383668,383809..383986,384115..384455,384489..384581))	Theileria parva strain Muguga	3503253
TpMuguga_01g00192	CDS	TpMuguga_01g00192	NC_007344.1	385303	385779	R	Rpp14/Pop5 family protein	complement(385303..385779)	Theileria parva strain Muguga	3503254
TpMuguga_01g00193	CDS	pgdP	NC_007344.1	385915	387617	R	6-phosphogluconate dehydrogenase domain protein	complement(join(385915..386022,386102..386231,386261..386345,386376..386504,386536..386736,386769..386994,387023..387280,387311..387355,387387..387617))	Theileria parva strain Muguga	3503238
TpMuguga_01g00194	CDS	arp4	NC_007344.1	387859	389475	R	Actin family protein	complement(387859..389475)	Theileria parva strain Muguga	3503239
TpMuguga_01g00195	CDS	TpMuguga_01g00195	NC_007344.1	389872	391657	R	putative integral membrane protein	complement(join(389872..390172,390247..390477,390508..390656,390686..391657))	Theileria parva strain Muguga	3503240
TpMuguga_01g00196	CDS	TpMuguga_01g00196	NC_007344.1	391881	393883	D	uncharacterized protein	join(391881..392022,392307..392386,392648..393883)	Theileria parva strain Muguga	3503241
TpMuguga_01g02045	CDS	Alg14	NC_007344.1	393861	394695	R	Oligosaccharide biosynthesis protein Alg14 like family protein	complement(join(393861..394043,394082..394141,394171..394331,394364..394510,394554..394695))	Theileria parva strain Muguga	86047609
TpMuguga_01g00197	CDS	engB	NC_007344.1	394787	395876	R	50S ribosome-binding GTPase family protein	complement(join(394787..394972,395002..395131,395167..395222,395252..395341,395371..395427,395457..395549,395579..395677,395713..395792,395825..395876))	Theileria parva strain Muguga	3503242
TpMuguga_01g00198	CDS	TpMuguga_01g00198	NC_007344.1	395990	396508	R	uncharacterized protein	complement(join(395990..396336,396397..396508))	Theileria parva strain Muguga	3503232
TpMuguga_01g00199	CDS	RPL13	NC_007344.1	396575	397192	R	Ribosomal protein L13e	complement(396575..397192)	Theileria parva strain Muguga	3503233
TpMuguga_01g00200	CDS	RpS16	NC_007344.1	397778	398221	D	Ribosomal protein S9/S16	397778..398221	Theileria parva strain Muguga	3503234
TpMuguga_01g00201	CDS	ATPC	NC_007344.1	398279	399397	R	ATP synthase F1 subunit gamma	complement(join(398279..398551,398581..398682,398713..398942,398981..399056,399101..399193,399227..399397))	Theileria parva strain Muguga	3503235
TpMuguga_01g00202	CDS	SMU1	NC_007344.1	399842	401879	D	WD domain G-beta repeat protein	join(399842..399873,399953..400163,400194..400422,400454..400638,400669..400733,400763..400838,400870..400965,400995..401052,401083..401152,401186..401265,401297..401469,401500..401626,401657..401751,401781..401879)	Theileria parva strain Muguga	3503236
TpMuguga_01g02055	CDS	TpMuguga_01g02055	NC_007344.1	402132	404259	D	HEC/Ndc80p family protein	join(402132..402313,402346..402535,402567..402870,402900..402991,403029..403136,403167..403238,403270..403314,403345..403386,403417..403536,403568..403639,403673..403741,403772..403873,403906..403935,403966..404088,404126..404178,404208..404259)	Theileria parva strain Muguga	3503098
TpMuguga_01g00206	CDS	TpMuguga_01g00206	NC_007344.1	404310	405599	R	putative integral membrane protein	complement(join(404310..404563,404611..404698,404730..404905,404938..405196,405228..405599))	Theileria parva strain Muguga	3503099
TpMuguga_01g00207	CDS	TpMuguga_01g00207	NC_007344.1	405911	406489	D	uncharacterized protein	join(405911..406223,406290..406489)	Theileria parva strain Muguga	3503100
TpMuguga_01g00208	CDS	TpMuguga_01g00208	NC_007344.1	406534	407414	R	uncharacterized protein	complement(join(406534..406665,406696..406786,406817..406939,406970..407060,407092..407238,407270..407414))	Theileria parva strain Muguga	3503101
TpMuguga_01g00209	CDS	TpMuguga_01g00209	NC_007344.1	408170	410248	D	Bromodomain protein	join(408170..409913,409950..410074,410105..410248)	Theileria parva strain Muguga	3503102
TpMuguga_01g00210	CDS	Sdhb	NC_007344.1	410366	411381	R	succinate dehydrogenase and fumarate reductase iron-sulfur protein	complement(join(410366..410433,410463..410649,410697..410783,410824..410886,410915..411157,411193..411381))	Theileria parva strain Muguga	3503145
TpMuguga_01g02015	CDS	Mettl13	NC_007344.1	411484	413910	R	Spermine/spermidine synthase family protein	complement(join(411484..411570,411601..411669,411706..412187,412223..412715,412747..412794,412881..413062,413097..413788,413819..413910))	Theileria parva strain Muguga	3503146
TpMuguga_01g02355	CDS	RRP3	NC_007344.1	413919	416549	R	DEAD/DEAH box helicase family protein	complement(join(413919..414097,414130..414394,414486..416549))	Theileria parva strain Muguga	3503147
TpMuguga_01g00213	CDS	TpMuguga_01g00213	NC_007344.1	416569	417256	R	RF-1 domain protein	complement(join(416569..417068,417109..417256))	Theileria parva strain Muguga	3503148
TpMuguga_01g00214	CDS	TpMuguga_01g00214	NC_007344.1	417532	418465	D	p21-C-terminal region-binding family protein	join(417532..417600,417674..418465)	Theileria parva strain Muguga	3503149
TpMuguga_01g02585	CDS	TpMuguga_01g02585	NC_007344.1	418764	421912	D	uncharacterized protein	join(418764..420566,420597..420677,420710..420856,420887..420959,420994..421190,421222..421310,421342..421619,421654..421812,421845..421912)	Theileria parva strain Muguga	3503150
TpMuguga_01g02780	CDS	TGFBRAP1	NC_007344.1	422096	425264	D	Vacuolar sorting protein 39 domain 2 family protein	join(422096..422233,422295..423942,423976..424062,424094..424179,424212..424335,424366..425264)	Theileria parva strain Muguga	3503046
TpMuguga_01g00219	CDS	ppt1	NC_007344.1	425667	428951	D	Calcineurin-like phosphoesterase	join(425667..425910,425994..426132,426164..426386,426476..427234,427265..427408,427441..427598,427628..427808,427882..428565,428645..428796,428828..428951)	Theileria parva strain Muguga	3503048
TpMuguga_01g00220	CDS	TpMuguga_01g00220	NC_007344.1	429010	429570	D	uncharacterized protein	join(429010..429093,429196..429570)	Theileria parva strain Muguga	3503049
TpMuguga_01g00221	CDS	TpMuguga_01g00221	NC_007344.1	429572	430441	D	Tetratricopeptide repeat family protein	429572..430441	Theileria parva strain Muguga	3503050
TpMuguga_01g00222	CDS	TpMuguga_01g00222	NC_007344.1	430532	432831	R	Acyltransferase family protein	complement(join(430532..430633,430662..430739,430773..430836,430866..430941,431057..431121,431152..431615,431648..431713,431743..431820,431850..431977,432011..432059,432100..432504,432535..432700,432767..432831))	Theileria parva strain Muguga	3503051
TpMuguga_01g00223	CDS	METTL17	NC_007344.1	433340	435467	D	Mitochondrial small ribosomal subunit Rsm22 family protein	join(433340..433694,433748..433914,433944..434039,434072..434145,434173..434267,434296..434396,434427..434483,434514..434618,434648..434746,434782..434852,434895..434967,435006..435074,435154..435191,435227..435356,435387..435467)	Theileria parva strain Muguga	3502863
TpMuguga_01g00224	CDS	ygaF	NC_007344.1	435520	436244	R	AhpC/TSA family protein	complement(join(435520..435563,435596..435764,435829..436076,436106..436244))	Theileria parva strain Muguga	3502864
TpMuguga_01g00225	CDS	polr2g	NC_007344.1	436525	437189	R	DNA-directed RNA polymerase II subunit rpb7	complement(join(436525..436803,436941..437189))	Theileria parva strain Muguga	3502865
TpMuguga_01g00226	CDS	TpMuguga_01g00226	NC_007344.1	437441	437719	D	uncharacterized protein	join(437441..437610,437692..437719)	Theileria parva strain Muguga	3502866
TpMuguga_01g00227	CDS	CAL	NC_007344.1	439262	440014	R	Caltractin	complement(join(439262..439311,439344..439413,439447..439490,439554..439631,439672..439786,439841..440014))	Theileria parva strain Muguga	3502867
TpMuguga_01g02025	CDS	TpMuguga_01g02025	NC_007344.1	441272	455524	D	uncharacterized protein	join(441272..441424,441455..441542,441575..442269,442309..442392,442444..442566,442692..448067,448211..455524)	Theileria parva strain Muguga	3502766
TpMuguga_01g00230	CDS	TpMuguga_01g00230	NC_007344.1	456079	458285	R	uncharacterized protein	complement(join(456079..456323,456500..456766,457073..458285))	Theileria parva strain Muguga	3502768
TpMuguga_01g00231	CDS	DCAF13	NC_007344.1	459531	461356	R	DDB1- and CUL4-associated factor 13	complement(join(459531..459611,459647..460040,460074..460303,460373..460482,460503..460584,460616..460779,460903..461005,461087..461212,461246..461356))	Theileria parva strain Muguga	3502769
TpMuguga_01g00232	CDS	TpMuguga_01g00232	NC_007344.1	462404	463129	D	uncharacterized protein	join(462404..462536,462684..463129)	Theileria parva strain Muguga	3502770
TpMuguga_01g00233	CDS	polr2h	NC_007344.1	463335	463982	D	RNA polymerase Rpb8 family protein	join(463335..463496,463591..463742,463859..463982)	Theileria parva strain Muguga	3502771
TpMuguga_01g00234	CDS	Dynll1	NC_007344.1	464095	464391	R	Dynein light chain 1	complement(464095..464391)	Theileria parva strain Muguga	3502806
TpMuguga_01g00235	CDS	TIF3A1	NC_007344.1	464688	468176	R	PCI domain protein	complement(join(464688..465965,466131..468176))	Theileria parva strain Muguga	3502807
TpMuguga_01g00236	CDS	TpMuguga_01g00236	NC_007344.1	469135	471207	D	S1 RNA binding domain protein	469135..471207	Theileria parva strain Muguga	3502808
TpMuguga_01g00237	CDS	TpMuguga_01g00237	NC_007344.1	471336	472740	D	uncharacterized protein	join(471336..471578,471614..471918,471977..472106,472141..472301,472366..472569,472635..472740)	Theileria parva strain Muguga	3502809
TpMuguga_01g00238	CDS	Rbmx2	NC_007344.1	472891	473923	D	uncharacterized protein	join(472891..473020,473057..473155,473228..473379,473432..473923)	Theileria parva strain Muguga	3502810
TpMuguga_01g00239	CDS	TpMuguga_01g00239	NC_007344.1	474509	476341	D	uncharacterized protein	474509..476341	Theileria parva strain Muguga	3502811
TpMuguga_01g00240	CDS	TpMuguga_01g00240	NC_007344.1	476641	478282	D	uncharacterized protein	join(476641..476710,476754..476847,476899..476963,477070..477778,477943..478282)	Theileria parva strain Muguga	3502501
TpMuguga_01g00241	CDS	cct4	NC_007344.1	478494	480614	R	T-complex protein 1 subunit delta	complement(join(478494..478797,478922..479148,479182..479334,479440..479856,479921..480013,480068..480226,480290..480432,480515..480614))	Theileria parva strain Muguga	3502502
TpMuguga_01g00242	CDS	TpMuguga_01g00242	NC_007344.1	481445	484685	D	Utp21 specific WD40 associated putative domain protein	join(481445..482447,482479..482586,482653..483017,483073..483201,483281..483382,483415..483522,483588..484239,484322..484398,484428..484685)	Theileria parva strain Muguga	3502503
TpMuguga_01g00243	CDS	Ddb1	NC_007344.1	484867	489662	D	CPSF A subunit region family protein	join(484867..485226,485298..489000,489211..489662)	Theileria parva strain Muguga	3502504
TpMuguga_01g00244	CDS	TpMuguga_01g00244	NC_007344.1	489801	490727	R	cyclophilin-1	complement(join(489801..489902,489995..490241,490306..490397,490485..490727))	Theileria parva strain Muguga	3502505
TpMuguga_01g00245	CDS	TpMuguga_01g00245	NC_007344.1	491162	492510	D	mRNA capping enzyme beta chain	join(491162..491900,491990..492510)	Theileria parva strain Muguga	3502506
TpMuguga_01g00246	CDS	TpMuguga_01g00246	NC_007344.1	492561	494471	R	uncharacterized protein	complement(join(492561..494104,494188..494304,494390..494471))	Theileria parva strain Muguga	3502507
TpMuguga_01g00247	CDS	DGAT1	NC_007344.1	494781	496995	R	MBOAT (membrane-bound O-acyltransferase) family protein	complement(join(494781..494837,494904..494969,495039..495299,495377..495496,495533..495638,495675..495760,495793..495919,495952..496045,496076..496235,496286..496359,496429..496580,496667..496995))	Theileria parva strain Muguga	3502508
TpMuguga_01g00248	CDS	THG1L	NC_007344.1	497282	498410	R	putative tRNA(His) guanylyltransferase	complement(join(497282..497582,497613..497692,497724..497809,497863..498032,498093..498137,498175..498410))	Theileria parva strain Muguga	3502509
TpMuguga_01g00249	CDS	TpMuguga_01g00249	NC_007344.1	498553	499899	R	uncharacterized protein	complement(join(498553..498627,498690..499423,499479..499583,499617..499686,499720..499899))	Theileria parva strain Muguga	3502510
TpMuguga_01g00250	CDS	TpMuguga_01g00250	NC_007344.1	500110	501532	D	Concanavalin A-like lectin/glucanases superfamily protein	join(500110..500221,500288..500383,500418..500555,500587..500616,500682..500980,501012..501032,501091..501165,501218..501532)	Theileria parva strain Muguga	3502511
TpMuguga_01g00251	CDS	TpMuguga_01g00251	NC_007344.1	501589	503523	R	uncharacterized protein	complement(join(501589..501789,501822..502222,502257..502832,502863..502975,503010..503070,503160..503523))	Theileria parva strain Muguga	3502416
TpMuguga_01g00252	CDS	ABCB27	NC_007344.1	503642	506004	R	ABC transporter family protein	complement(join(503642..503810,503840..503939,504030..504567,504615..504713,504792..504856,504892..505069,505154..505206,505263..506004))	Theileria parva strain Muguga	3502417
TpMuguga_01g00253	CDS	TpMuguga_01g00253	NC_007344.1	506610	507958	D	putative integral membrane protein	join(506610..506713,507435..507572,507636..507728,507767..507813,507846..507958)	Theileria parva strain Muguga	3502418
TpMuguga_01g00254	CDS	TpMuguga_01g00254	NC_007344.1	508175	509372	D	uncharacterized protein	join(508175..508292,508332..508358,508390..508424,508472..508499,508700..508888,508966..509134,509201..509372)	Theileria parva strain Muguga	3502419
TpMuguga_01g00255	CDS	TpMuguga_01g00255	NC_007344.1	509428	510067	R	uncharacterized protein	complement(join(509428..509481,509510..509566,509595..509678,509709..509792,509822..510067))	Theileria parva strain Muguga	3502420
TpMuguga_01g00256	CDS	TpMuguga_01g00256	NC_007344.1	511045	515109	R	uncharacterized protein	complement(511045..515109)	Theileria parva strain Muguga	3502421
TpMuguga_01g00257	CDS	TpMuguga_01g00257	NC_007344.1	516339	523523	R	uncharacterized protein	complement(join(516339..521133,521167..523523))	Theileria parva strain Muguga	3502422
TpMuguga_01g00258	CDS	TpMuguga_01g00258	NC_007344.1	524577	526022	R	uncharacterized protein	complement(524577..526022)	Theileria parva strain Muguga	3502423
TpMuguga_01g02275	CDS	TpMuguga_01g02275	NC_007344.1	527332	533318	D	uncharacterized protein	join(527332..527666,527698..528195,528224..533318)	Theileria parva strain Muguga	3502424
TpMuguga_01g00261	CDS	TpMuguga_01g00261	NC_007344.1	533439	534179	R	uncharacterized protein	complement(533439..534179)	Theileria parva strain Muguga	3502426
TpMuguga_01g00262	CDS	KGD2	NC_007344.1	534821	536515	D	E2 component of oxoglutarate dehydrogenase (succinyl-transferring) complex; dihydrolipoyllysine-residue succinyltransferase	join(534821..535031,535063..535251,535283..535578,535609..535831,535906..536033,536110..536194,536224..536286,536340..536515)	Theileria parva strain Muguga	3502427
TpMuguga_01g00263	CDS	TpMuguga_01g00263	NC_007344.1	536796	544811	R	MATH domain protein	complement(536796..544811)	Theileria parva strain Muguga	3503586
TpMuguga_01g00264	CDS	GSH2	NC_007344.1	545668	547616	R	glutathione synthase ATP binding domain protein	complement(join(545668..546147,546178..546962,546992..547616))	Theileria parva strain Muguga	3503587
TpMuguga_01g00265	CDS	GSH2	NC_007344.1	548707	550650	D	glutathione synthase ATP binding domain protein	join(548707..549328,549359..550140,550171..550650)	Theileria parva strain Muguga	3503588
TpMuguga_01g00266	CDS	TpMuguga_01g00266	NC_007344.1	551356	553470	D	uncharacterized protein	join(551356..551500,551536..552153,552185..553470)	Theileria parva strain Muguga	3503589
TpMuguga_01g00267	CDS	TpMuguga_01g00267	NC_007344.1	553476	553959	R	Prefoldin subunit family protein	complement(join(553476..553526,553557..553617,553649..553773,553805..553875,553920..553959))	Theileria parva strain Muguga	3503590
TpMuguga_01g00268	CDS	TpMuguga_01g00268	NC_007344.1	554149	554585	R	uncharacterized protein	complement(join(554149..554411,554459..554585))	Theileria parva strain Muguga	3503591
TpMuguga_01g00269	CDS	DUS1	NC_007344.1	554790	556083	R	tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]	complement(join(554790..554837,554855..554981,555013..555123,555155..555215,555255..555372,555405..555513,555545..555603,555636..555721,555754..555836,555868..555924,555959..556083))	Theileria parva strain Muguga	3503259
TpMuguga_01g00270	CDS	TpMuguga_01g00270	NC_007344.1	556402	557018	R	uncharacterized protein	complement(join(556402..556492,556529..556788,556830..557018))	Theileria parva strain Muguga	3503260
TpMuguga_01g00271	CDS	TpMuguga_01g00271	NC_007344.1	557120	559081	R	uncharacterized protein	complement(join(557120..557746,557777..558473,558504..559081))	Theileria parva strain Muguga	3503261
TpMuguga_01g00272	CDS	TpMuguga_01g00272	NC_007344.1	559288	560111	D	Kinase binding protein CGI-121 family protein	join(559288..559551,559584..559706,559736..559819,559848..559937,560025..560111)	Theileria parva strain Muguga	3503262
TpMuguga_01g02345	CDS	PIP5K7	NC_007344.1	560190	564862	R	MORN repeat family protein	complement(join(560190..561089,561146..561243,561344..561417,561503..563387,563420..563489,563521..563578,563609..564114,564146..564862))	Theileria parva strain Muguga	3503392
TpMuguga_01g00276	CDS	TCTP	NC_007344.1	565369	566010	D	Translationally-controlled tumor protein-like protein	join(565369..565462,565549..565612,565647..566010)	Theileria parva strain Muguga	3503393
TpMuguga_01g00277	CDS	TpMuguga_01g00277	NC_007344.1	566247	567259	D	uncharacterized protein	join(566247..566558,566651..566774,566816..566936,566971..567070,567143..567259)	Theileria parva strain Muguga	3503394
TpMuguga_01g00278	CDS	fusA	NC_007344.1	567329	570393	R	translation elongation factor G	complement(join(567329..567929,567964..568124,568156..568344,568382..568567,568707..568765,568797..568940,568972..569079,569110..569174,569211..569306,569391..569548,569614..569721,569751..569908,569938..570033,570078..570393))	Theileria parva strain Muguga	3503395
TpMuguga_01g00279	CDS	DRG1	NC_007344.1	570702	572013	D	uncharacterized protein	join(570702..570831,570891..571316,571382..571647,571735..572013)	Theileria parva strain Muguga	3503396
TpMuguga_01g00280	CDS	TpMuguga_01g00280	NC_007344.1	572177	572636	D	uncharacterized protein	join(572177..572356,572448..572636)	Theileria parva strain Muguga	3503027
TpMuguga_01g00281	CDS	setd8-a	NC_007344.1	572701	575762	R	N-lysine methyltransferase SETD8-A	complement(join(572701..572776,572809..572994,573072..573150,573267..573424,573522..574487,574586..574926,575034..575762))	Theileria parva strain Muguga	3503028
TpMuguga_01g00282	CDS	TpMuguga_01g00282	NC_007344.1	576198	577056	R	uncharacterized protein	complement(join(576198..576332,576360..576445,576530..576597,576630..576712,576751..577056))	Theileria parva strain Muguga	3503029
TpMuguga_01g00283	CDS	sal3	NC_007344.1	577163	580990	R	HEAT repeat family protein	complement(join(577163..577378,577525..577990,578116..578789,578901..579121,579268..580990))	Theileria parva strain Muguga	3503030
TpMuguga_01g00284	CDS	TpMuguga_01g00284	NC_007344.1	581465	583600	D	uncharacterized protein	join(581465..581551,581620..581985,582016..582173,582206..582291,582368..582570,582602..582687,582757..583020,583107..583192,583263..583467,583501..583600)	Theileria parva strain Muguga	3503031
TpMuguga_01g00285	CDS	TpMuguga_01g00285	NC_007344.1	583614	584609	R	or RNP domain; RBD; RRM; RNA recognition motif family protein	complement(join(583614..583655,583753..583836,583868..583951,584008..584325,584408..584472,584555..584609))	Theileria parva strain Muguga	3502725
TpMuguga_01g00286	CDS	SMC1	NC_007344.1	584879	589447	D	uncharacterized protein	join(584879..585197,585230..585456,585578..585729,585836..586001,586036..586124,586386..586866,586913..589447)	Theileria parva strain Muguga	3502726
TpMuguga_01g00287	CDS	Ufm1	NC_007344.1	589687	590233	R	Ubiquitin-fold modifier 1	complement(join(589687..589757,589843..589915,589944..590001,590124..590177,590211..590233))	Theileria parva strain Muguga	3502727
TpMuguga_01g00288	CDS	TpMuguga_01g00288	NC_007344.1	590978	592888	D	uncharacterized protein	590978..592888	Theileria parva strain Muguga	3502728
TpMuguga_01g00289	CDS	TpMuguga_01g00289	NC_007344.1	592954	597125	R	uncharacterized protein	complement(join(592954..593046,593076..593207,593237..593299,593329..593412,593547..593642,593726..595557,596333..597125))	Theileria parva strain Muguga	3502729
TpMuguga_01g00290	CDS	RPT5A	NC_007344.1	597526	599895	D	26S proteasome regulatory subunit 6A-like protein	join(597526..597750,597869..597973,598207..598423,598539..598595,598666..598730,598848..598974,599115..599336,599568..599680,599767..599895)	Theileria parva strain Muguga	3502730
TpMuguga_01g00291	CDS	TpMuguga_01g00291	NC_007344.1	600416	602225	R	uncharacterized protein	complement(join(600416..600567,600660..601458,601707..601848,601926..602059,602154..602225))	Theileria parva strain Muguga	3502731
TpMuguga_01g00292	CDS	hagh	NC_007344.1	602628	604565	D	hydroxyacylglutathione hydrolase	join(602628..602837,602995..603184,603638..603751,603799..603906,603987..604128,604315..604420,604455..604565)	Theileria parva strain Muguga	3502732
TpMuguga_01g00293	CDS	RPL38	NC_007344.1	604673	604912	R	Ribosomal L38e family protein	complement(604673..604912)	Theileria parva strain Muguga	3502733
TpMuguga_01g02155	CDS	RPLP0	NC_007344.1	606047	606985	R	60S acidic ribosomal protein P0	complement(606047..606985)	Theileria parva strain Muguga	3502734
TpMuguga_01g02685	CDS	TpMuguga_01g02685	NC_007344.1	607538	611874	D	uncharacterized protein	join(607538..607574,607683..607840,608072..608204,608312..608549,608706..608841,608976..609188,609218..609295,609325..609467,609505..609569,610546..611316,611435..611874)	Theileria parva strain Muguga	3502735
TpMuguga_01g00297	CDS	TpMuguga_01g00297	NC_007344.1	613153	613683	D	uncharacterized protein	join(613153..613417,613450..613544,613627..613683)	Theileria parva strain Muguga	3502565
TpMuguga_01g00298	CDS	TpMuguga_01g00298	NC_007344.1	613943	614341	D	uncharacterized protein	613943..614341	Theileria parva strain Muguga	3502566
TpMuguga_01g02875	CDS	obg	NC_007344.1	615046	618289	R	GTP1/OBG family protein	complement(join(615046..615425,615459..615639,615784..616062,616091..616197,616239..616348,616455..616521,616551..616635,617424..617674,617704..618289))	Theileria parva strain Muguga	3502567
TpMuguga_01g00301	CDS	CHIP	NC_007344.1	618410	620055	R	U-box domain protein	complement(join(618410..618518,618548..618651,618731..618865,619248..619423,619489..619618,619750..620055))	Theileria parva strain Muguga	3502569
TpMuguga_01g00302	CDS	DHAPRD	NC_007344.1	620173	623001	R	glycerol-3-phosphate dehydrogenase (NAD(+))	complement(join(620173..620199,620556..620690,621389..621541,621723..622004,622275..622445,622566..622757,622863..622952,622987..623001))	Theileria parva strain Muguga	3502559
TpMuguga_01g00303	CDS	Prpf4b	NC_007344.1	623283	627120	D	Protein kinase domain protein	join(623283..623744,623854..623902,624041..624744,624859..625023,625379..625689,625916..626022,626109..626332,626752..627120)	Theileria parva strain Muguga	3502560
TpMuguga_01g00304	CDS	RFESD	NC_007344.1	627153	627781	D	Rieske domain-containing protein	join(627153..627188,627294..627336,627395..627471,627500..627781)	Theileria parva strain Muguga	3502561
TpMuguga_01g00305	CDS	TpMuguga_01g00305	NC_007344.1	628371	629098	R	uncharacterized protein	complement(join(628371..628418,628450..628555,628586..628684,628852..628939,628975..629098))	Theileria parva strain Muguga	3502562
TpMuguga_01g02445	CDS	TpMuguga_01g02445	NC_007344.1	629303	634293	D	uncharacterized protein	join(629303..631866,632499..633545,633576..634293)	Theileria parva strain Muguga	3503323
TpMuguga_01g00308	CDS	Exosc1	NC_007344.1	634391	635208	D	Exosome component EXOSC1/CSL4 family protein	join(634391..634519,634570..634721,634806..634890,634979..635060,635092..635158,635187..635208)	Theileria parva strain Muguga	3503324
TpMuguga_01g00309	CDS	esf-2	NC_007344.1	635295	636266	R	Pre-rRNA-processing protein esf-2	complement(635295..636266)	Theileria parva strain Muguga	3503325
TpMuguga_01g02410	CDS	dnaJ	NC_007344.1	636379	638356	D	DnaJ domain protein	join(636379..636648,636706..636845,637595..637766,637814..637899,638060..638249,638279..638356)	Theileria parva strain Muguga	3503327
TpMuguga_01g00312	CDS	TpMuguga_01g00312	NC_007344.1	638583	638999	R	ELM2 domain protein	complement(638583..638999)	Theileria parva strain Muguga	3503328
TpMuguga_01g00313	CDS	TpMuguga_01g00313	NC_007344.1	639980	641724	D	putative integral membrane protein	join(639980..640168,640592..640715,640751..640843,640884..640941,640973..641070,641365..641399,641450..641483,641513..641572,641606..641637,641671..641724)	Theileria parva strain Muguga	3503329
TpMuguga_01g00314	CDS	eif3g-a	NC_007344.1	641841	643545	D	Eukaryotic translation initiation factor 3 subunit G-A	join(641841..641859,641890..642056,642412..642612,642810..642887,642918..642995,643133..643245,643371..643482,643513..643545)	Theileria parva strain Muguga	3503604
TpMuguga_01g00315	CDS	TpMuguga_01g00315	NC_007344.1	643575	645231	R	Ubiquitin family protein	complement(join(643575..643627,644211..645231))	Theileria parva strain Muguga	3503605
TpMuguga_01g00316	CDS	USP5	NC_007344.1	645405	649322	D	Ubiquitin carboxyl-terminal hydrolase family protein	join(645405..645505,645563..645742,645785..645887,645936..646010,646462..646580,646737..646818,646849..646929,646983..647050,647127..647237,647271..647391,647422..647581,647612..647659,648002..648120,648151..648327,648370..648701,648882..649017,649047..649322)	Theileria parva strain Muguga	3503606
TpMuguga_01g00317	CDS	TpMuguga_01g00317	NC_007344.1	650371	651102	R	Ribosomal protein L10 family protein	complement(650371..651102)	Theileria parva strain Muguga	3503607
TpMuguga_01g02285	CDS	TpMuguga_01g02285	NC_007344.1	651312	651590	D	uncharacterized protein	651312..651590	Theileria parva strain Muguga	86047624
TpMuguga_01g02145	CDS	DEGP9	NC_007344.1	651608	654310	R	Trypsin family protein	complement(join(651608..651961,652073..652186,652277..652379,652532..652670,652802..653064,653367..653606,653687..653773,653802..654310))	Theileria parva strain Muguga	3503608
TpMuguga_01g00320	CDS	TpMuguga_01g00320	NC_007344.1	654659	655467	R	glutaredoxin 11E	complement(join(654659..654715,654751..654812,654925..654991,655167..655227,655259..655467))	Theileria parva strain Muguga	3503566
TpMuguga_01g00321	CDS	TpMuguga_01g00321	NC_007344.1	656493	659549	D	uncharacterized protein	join(656493..658591,659059..659332,659463..659549)	Theileria parva strain Muguga	3503567
TpMuguga_01g00322	CDS	TpMuguga_01g00322	NC_007344.1	659686	660180	D	putative integral membrane protein	join(659686..659918,660057..660180)	Theileria parva strain Muguga	3503568
TpMuguga_01g00323	CDS	TpMuguga_01g00323	NC_007344.1	660487	661231	D	putative integral membrane protein	join(660487..660734,661108..661231)	Theileria parva strain Muguga	3503569
TpMuguga_01g00324	CDS	TpMuguga_01g00324	NC_007344.1	661376	663379	R	tubulin/FtsZ family GTPase domain protein	complement(join(661376..661733,661925..662700,662977..663103,663318..663379))	Theileria parva strain Muguga	3503570
TpMuguga_01g00325	CDS	TpMuguga_01g00325	NC_007344.1	665733	669425	D	uncharacterized protein	665733..669425	Theileria parva strain Muguga	3502530
TpMuguga_01g00326	CDS	TpMuguga_01g00326	NC_007344.1	669650	670664	R	emp24/gp25L/p24 family/GOLD family protein	complement(join(669650..670041,670211..670460,670545..670664))	Theileria parva strain Muguga	3502531
TpMuguga_01g00327	CDS	TpMuguga_01g00327	NC_007344.1	670767	677515	R	uncharacterized protein	complement(join(670767..673981,674139..676052,676082..676246,676372..677361,677401..677515))	Theileria parva strain Muguga	3502532
TpMuguga_01g00329	CDS	TpMuguga_01g00329	NC_007344.1	677787	678874	R	uncharacterized protein	complement(join(677787..677898,677935..678024,678076..678163,678239..678444,678522..678874))	Theileria parva strain Muguga	3502533
TpMuguga_01g00330	CDS	TpMuguga_01g00330	NC_007344.1	679218	680313	R	phosphatase family protein	complement(join(679218..679265,679296..679315,679352..679450,679519..679679,679760..679826,679858..679896,679927..680088,680184..680313))	Theileria parva strain Muguga	3502535
TpMuguga_01g00331	CDS	NOB1	NC_007344.1	680440	681673	R	Nin one binding (NOB1) Zn-ribbon like family protein	complement(join(680440..680577,680667..680964,681030..681673))	Theileria parva strain Muguga	3503598
TpMuguga_01g00332	CDS	trappc3	NC_007344.1	682018	682823	D	Bet3 transport protein	join(682018..682071,682111..682208,682244..682343,682439..682621,682677..682760,682791..682823)	Theileria parva strain Muguga	3503599
TpMuguga_01g00333	CDS	TpMuguga_01g00333	NC_007344.1	682902	683880	R	uncharacterized protein	complement(join(682902..683270,683537..683731,683764..683880))	Theileria parva strain Muguga	3503600
TpMuguga_01g00334	CDS	TpMuguga_01g00334	NC_007344.1	684125	685369	R	uncharacterized protein	complement(684125..685369)	Theileria parva strain Muguga	3503601
TpMuguga_01g00335	CDS	eIF-2gamma	NC_007344.1	686161	688003	D	Elongation factor Tu GTP binding domain	join(686161..686196,686227..686305,686398..686509,686552..686689,686764..687017,687091..687403,687516..687701,687733..688003)	Theileria parva strain Muguga	3503602
TpMuguga_01g00336	CDS	TpMuguga_01g00336	NC_007344.1	688387	700281	R	uncharacterized protein	complement(join(688387..697844,697902..700281))	Theileria parva strain Muguga	3503603
TpMuguga_01g00337	CDS	TpMuguga_01g00337	NC_007344.1	702403	702990	D	uncharacterized protein	join(702403..702615,702655..702990)	Theileria parva strain Muguga	3502947
TpMuguga_01g00338	CDS	TpMuguga_01g00338	NC_007344.1	703127	703705	R	TB2/DP1 HVA22 family protein	complement(703127..703705)	Theileria parva strain Muguga	3502948
TpMuguga_01g00339	CDS	TpMuguga_01g00339	NC_007344.1	703773	704921	R	uncharacterized protein	complement(join(703773..703812,703861..703932,703997..704092,704128..704216,704313..704437,704471..704619,704680..704921))	Theileria parva strain Muguga	3502949
TpMuguga_01g00340	CDS	Ppie	NC_007344.1	705022	705354	D	Peptidyl-prolyl cis-trans isomerase E	join(705022..705148,705227..705354)	Theileria parva strain Muguga	3502950
TpMuguga_01g00341	CDS	PAT07	NC_007344.1	705405	706477	R	DHHC palmitoyltransferase family protein	complement(join(705405..705448,705486..705631,705675..705748,705804..705912,705945..706032,706068..706279,706311..706398,706432..706477))	Theileria parva strain Muguga	3502951
TpMuguga_01g00342	CDS	TpMuguga_01g00342	NC_007344.1	706642	711882	D	uncharacterized protein	706642..711882	Theileria parva strain Muguga	3502952
TpMuguga_01g00343	CDS	TpMuguga_01g00343	NC_007344.1	712086	713469	D	Conserved hypothetical protein 95 family protein	join(712086..712359,712397..712518,712620..712684,712750..712852,712915..712983,713016..713117,713167..713247,713278..713469)	Theileria parva strain Muguga	3502953
TpMuguga_01g00344	CDS	Znf259	NC_007344.1	713490	715510	R	ZPR1 zinc-finger domain protein	complement(join(713490..714031,714093..714305,714362..714533,714568..714678,714713..715008,715134..715182,715216..715334,715369..715510))	Theileria parva strain Muguga	3503526
TpMuguga_01g00345	CDS	CNOT4	NC_007344.1	715681	717240	D	CCR4-NOT transcription complex subunit 4	715681..717240	Theileria parva strain Muguga	3503527
TpMuguga_01g00346	CDS	TpMuguga_01g00346	NC_007344.1	717262	718505	R	uncharacterized protein	complement(join(717262..717996,718029..718505))	Theileria parva strain Muguga	3503528
TpMuguga_01g00347	CDS	SBDS	NC_007344.1	718819	720260	R	SBDS C-terminal domain protein	complement(join(718819..719636,719701..719802,719880..719963,720003..720065,720134..720260))	Theileria parva strain Muguga	3503529
TpMuguga_01g00348	CDS	TpMuguga_01g00348	NC_007344.1	720485	721228	D	Inhibitor of growth proteins N-terminal histone-binding family protein	720485..721228	Theileria parva strain Muguga	3503530
TpMuguga_01g00349	CDS	TpMuguga_01g00349	NC_007344.1	721370	723153	D	RAP domain protein	join(721370..721852,721885..722139,722222..722533,722572..723153)	Theileria parva strain Muguga	3503544
TpMuguga_01g00350	CDS	TpMuguga_01g00350	NC_007344.1	723235	724644	R	uncharacterized protein	complement(join(723235..723486,723519..723631,723673..723721,723762..723830,723859..724049,724099..724262,724373..724418,724482..724644))	Theileria parva strain Muguga	3503545
TpMuguga_01g00351	CDS	RPS18	NC_007344.1	724723	725187	R	Ribosomal protein S13/S18	complement(724723..725187)	Theileria parva strain Muguga	3503546
TpMuguga_01g00352	CDS	RPL11A	NC_007344.1	725668	726293	R	60S ribosomal protein L11-1	complement(join(725668..725828,725908..726193,726225..726293))	Theileria parva strain Muguga	3503547
TpMuguga_01g02505	CDS	TpMuguga_01g02505	NC_007344.1	726711	728985	R	putative integral membrane protein	complement(join(726711..727027,727135..727198,727230..727387,727419..727590,727638..727705,727773..727885,727945..728060,728125..728208,728279..728777,728834..728985))	Theileria parva strain Muguga	3503548
TpMuguga_01g00355	CDS	TpMuguga_01g00355	NC_007344.1	729267	731189	R	putative integral membrane protein	complement(729267..731189)	Theileria parva strain Muguga	3502891
TpMuguga_01g00356	CDS	ARP6	NC_007344.1	731773	733761	R	Actin family protein	complement(join(731773..731961,732046..732218,732288..732621,732688..732819,732883..733761))	Theileria parva strain Muguga	3502892
TpMuguga_01g00357	CDS	TpMuguga_01g00357	NC_007344.1	734001	734597	D	uncharacterized protein	join(734001..734084,734184..734420,734463..734597)	Theileria parva strain Muguga	3502893
TpMuguga_01g00358	CDS	TpMuguga_01g00358	NC_007344.1	734652	737375	R	WD domain G-beta repeat protein	complement(join(734652..735494,735583..735813,735890..737020,737109..737375))	Theileria parva strain Muguga	3502894
TpMuguga_01g00359	CDS	MPK16	NC_007344.1	738580	740508	D	Protein kinase domain protein	738580..740508	Theileria parva strain Muguga	3502895
TpMuguga_01g02005	CDS	TBC1D2	NC_007344.1	740686	742165	R	Rab-GTPase-TBC domain protein	complement(join(740686..740970,741004..741073,741119..741215,741296..741410,741440..741608,741674..741742,741774..741866,741906..742165))	Theileria parva strain Muguga	3502896
TpMuguga_01g00362	CDS	TpMuguga_01g00362	NC_007344.1	742575	744509	R	RAP domain protein	complement(join(742575..742680,742757..743055,743087..743169,743203..743267,743310..743357,743400..743647,743687..743784,743863..743949,743986..744118,744150..744509))	Theileria parva strain Muguga	3502598
TpMuguga_01g00363	CDS	guaC	NC_007344.1	744873	745853	D	IMP dehydrogenase / GMP reductase domain protein	744873..745853	Theileria parva strain Muguga	3502599
TpMuguga_01g00364	CDS	PA2G4	NC_007344.1	746537	747919	D	Metallopeptidase family M24	join(746537..746693,746761..746852,746884..746993,747062..747800,747866..747919)	Theileria parva strain Muguga	3502600
TpMuguga_01g00365	CDS	TpMuguga_01g00365	NC_007344.1	748303	749349	D	putative integral membrane protein	join(748303..748359,748516..749349)	Theileria parva strain Muguga	3502601
TpMuguga_01g00366	CDS	TpMuguga_01g00366	NC_007344.1	749473	751916	D	Rad4 beta-hairpin domain 1 family protein	join(749473..749580,749629..749754,749819..749905,749948..750018,750049..750091,750121..750196,750227..750243,750274..750794,750853..751129,751163..751336,751372..751467,751508..751703,751735..751916)	Theileria parva strain Muguga	3502602
TpMuguga_01g00367	CDS	TpMuguga_01g00367	NC_007344.1	752164	752712	D	uncharacterized protein	752164..752712	Theileria parva strain Muguga	3502603
TpMuguga_01g00368	CDS	D2Wsu81e	NC_007344.1	752871	754469	R	putative RNA methyltransferase family protein	complement(join(752871..753045,753107..753260,753334..753629,753661..753736,753797..753895,753925..754015,754077..754154,754190..754329,754388..754469))	Theileria parva strain Muguga	3502536
TpMuguga_01g00369	CDS	rplM	NC_007344.1	754708	755782	R	Ribosomal protein L13 family protein	complement(join(754708..754918,754982..755040,755112..755176,755219..755387,755452..755584,755697..755782))	Theileria parva strain Muguga	3502537
TpMuguga_01g00370	CDS	TpMuguga_01g00370	NC_007344.1	755868	757636	R	uncharacterized protein	complement(join(755868..755948,756022..756141,756202..756244,756286..756393,756433..756547,756583..756885,756956..757030,757060..757180,757240..757320,757385..757477,757511..757636))	Theileria parva strain Muguga	3502538
TpMuguga_01g02775	CDS	TpMuguga_01g02775	NC_007344.1	757776	759153	R	uncharacterized protein	complement(join(757776..757835,757886..758115,758149..758278,758313..758410,758490..758548,758582..758771,758802..758942,759024..759153))	Theileria parva strain Muguga	3502540
TpMuguga_01g00373	CDS	SEC24A	NC_007344.1	759455	762706	R	Sec23/Sec24 beta-sandwich domain protein	complement(join(759455..761199,761293..762706))	Theileria parva strain Muguga	3502459
TpMuguga_01g00374	CDS	ddx27	NC_007344.1	763262	765169	D	DEAD/DEAH box helicase family protein	join(763262..763433,763469..763561,763595..763654,763715..763839,763872..763989,764037..764207,764239..764316,764373..764568,764605..764682,764715..764852,764884..765169)	Theileria parva strain Muguga	3502460
TpMuguga_01g00375	CDS	TpMuguga_01g00375	NC_007344.1	765630	766949	D	uncharacterized protein	join(765630..765692,765801..765917,765963..766133,766167..766245,766301..766420,766515..766698,766748..766949)	Theileria parva strain Muguga	3502461
TpMuguga_01g00376	CDS	SNRPF	NC_007344.1	767012	767418	R	Small nuclear ribonucleoprotein F	complement(join(767012..767063,767103..767208,767252..767342,767392..767418))	Theileria parva strain Muguga	3502462
TpMuguga_01g00377	CDS	TpMuguga_01g00377	NC_007344.1	767647	768893	D	putative methyltransferase family protein	join(767647..767745,767811..767925,767958..767993,768064..768185,768238..768294,768324..768392,768432..768561,768637..768722,768789..768893)	Theileria parva strain Muguga	3502463
TpMuguga_01g00378	CDS	TpMuguga_01g00378	NC_007344.1	769325	770044	D	uncharacterized protein	769325..770044	Theileria parva strain Muguga	3502488
TpMuguga_01g00379	CDS	TpMuguga_01g00379	NC_007344.1	770775	771437	D	uncharacterized protein	770775..771437	Theileria parva strain Muguga	3502489
TpMuguga_01g00380	CDS	TpMuguga_01g00380	NC_007344.1	771958	775561	D	uncharacterized protein	join(771958..774322,774357..775561)	Theileria parva strain Muguga	3502490
TpMuguga_01g00381	CDS	dut	NC_007344.1	776044	776669	D	Deoxyuridine 5'-triphosphate nucleotidohydrolase	join(776044..776311,776433..776569,776607..776669)	Theileria parva strain Muguga	3502491
TpMuguga_01g00382	CDS	TpMuguga_01g00382	NC_007344.1	776790	779081	R	uncharacterized protein	complement(join(776790..776939,777064..777860,777998..779081))	Theileria parva strain Muguga	3502492
TpMuguga_01g02460	CDS	TpMuguga_01g02460	NC_007344.1	779707	781135	R	Rhomboid family protein	complement(join(779707..780329,780418..781135))	Theileria parva strain Muguga	3502494
TpMuguga_01g00385	CDS	TpMuguga_01g00385	NC_007344.1	781540	782679	D	uncharacterized protein	join(781540..782266,782293..782387,782417..782499,782565..782679)	Theileria parva strain Muguga	3502761
TpMuguga_01g00386	CDS	PEO1	NC_007344.1	782722	788771	R	DNA polymerase family A family protein	complement(join(782722..782832,782862..782993,783038..783130,783162..783370,783423..783462,783527..783744,783812..784033,784182..786515,786582..787874,787955..788598,788707..788771))	Theileria parva strain Muguga	3502762
TpMuguga_01g02475	CDS	TpMuguga_01g02475	NC_007344.1	789515	792392	D	uncharacterized protein	join(789515..789617,789654..790459,790491..790640,790730..790988,791035..791121,791220..791298,791337..791628,791700..791794,791876..792002,792035..792124,792154..792237,792267..792392)	Theileria parva strain Muguga	3502764
TpMuguga_01g00389	CDS	ATPB	NC_007344.1	792551	794628	R	ATP synthase F1 subunit beta	complement(join(792551..792813,792996..793562,793707..794628))	Theileria parva strain Muguga	3502765
TpMuguga_01g00390	CDS	SHM3	NC_007344.1	794891	796767	R	Serine hydroxymethyltransferase 3	complement(join(794891..795006,795138..795492,795548..795848,795984..796441,796486..796767))	Theileria parva strain Muguga	3502778
TpMuguga_01g00391	CDS	TpMuguga_01g00391	NC_007344.1	796966	799113	R	TFIIS helical bundle-like domain protein	complement(join(796966..798741,798773..798936,799011..799113))	Theileria parva strain Muguga	3502779
TpMuguga_01g00392	CDS	TpMuguga_01g00392	NC_007344.1	799408	800181	R	putative integral membrane protein	complement(799408..800181)	Theileria parva strain Muguga	3502780
TpMuguga_01g00393	CDS	TpMuguga_01g00393	NC_007344.1	800795	801247	D	Ribosomal protein L35 family protein	800795..801247	Theileria parva strain Muguga	3502781
TpMuguga_01g00394	CDS	TpMuguga_01g00394	NC_007344.1	801303	804522	R	Coatomer WD associated region family protein	complement(join(801303..801467,801510..801620,801714..801823,801862..803065,803155..803243,803334..804522))	Theileria parva strain Muguga	3502782
TpMuguga_01g00395	CDS	Chmp1a	NC_007344.1	804759	805612	R	Charged multivesicular body protein 1a	complement(join(804759..804950,805011..805121,805193..805399,805550..805612))	Theileria parva strain Muguga	3502783
TpMuguga_01g00396	CDS	dis3	NC_007344.1	805718	808984	D	DIS3-like exonuclease 1	805718..808984	Theileria parva strain Muguga	3502819
TpMuguga_01g00397	CDS	MPA1	NC_007344.1	809208	812386	D	aminopeptidase N	join(809208..810849,810966..812386)	Theileria parva strain Muguga	3502820
TpMuguga_01g00398	CDS	TpMuguga_01g00398	NC_007344.1	812823	813851	R	3' exoribonuclease domain 1 protein	complement(join(812823..812987,813120..813190,813221..813566,813666..813851))	Theileria parva strain Muguga	3502821
TpMuguga_01g00399	CDS	TpMuguga_01g00399	NC_007344.1	814016	815020	R	Acidic leucine-rich nuclear phosphoprotein 32-related protein	complement(join(814016..814134,814166..814270,814337..814565,814649..815020))	Theileria parva strain Muguga	3502822
TpMuguga_01g00400	CDS	TpMuguga_01g00400	NC_007344.1	815446	816753	R	WW domain binding protein 11 family protein	complement(join(815446..815476,815583..815992,816034..816194,816302..816337,816373..816480,816570..816663,816697..816753))	Theileria parva strain Muguga	3502823
TpMuguga_01g00401	CDS	TpMuguga_01g00401	NC_007344.1	816878	818486	R	uncharacterized protein	complement(join(816878..817585,817677..818486))	Theileria parva strain Muguga	3502824
TpMuguga_01g00402	CDS	TpMuguga_01g00402	NC_007344.1	818674	819087	D	uncharacterized protein	join(818674..818775,818926..819087)	Theileria parva strain Muguga	3502825
TpMuguga_01g00403	CDS	TpMuguga_01g00403	NC_007344.1	819423	821550	D	Major Facilitator Superfamily protein	join(819423..820215,820384..821115,821223..821328,821436..821550)	Theileria parva strain Muguga	3502915
TpMuguga_01g00404	CDS	TpMuguga_01g00404	NC_007344.1	821625	822680	D	uncharacterized protein	821625..822680	Theileria parva strain Muguga	3502916
TpMuguga_01g00405	CDS	TpMuguga_01g00405	NC_007344.1	822796	824851	R	Asparagine synthase family protein	complement(join(822796..823246,823316..823460,823491..823600,823677..824851))	Theileria parva strain Muguga	3502917
TpMuguga_01g02525	CDS	TpMuguga_01g02525	NC_007344.1	825402	831615	D	uncharacterized protein	join(825402..828208,828298..828402,828507..830721,830860..830961,831035..831102,831240..831615)	Theileria parva strain Muguga	3502919
TpMuguga_01g00408	CDS	TpMuguga_01g00408	NC_007344.1	832481	835390	D	uncharacterized protein	832481..835390	Theileria parva strain Muguga	3502920
TpMuguga_01g00409	CDS	TpMuguga_01g00409	NC_007344.1	835711	836850	R	uncharacterized protein	complement(join(835711..836292,836371..836850))	Theileria parva strain Muguga	3503112
TpMuguga_01g00410	CDS	TpMuguga_01g00410	NC_007344.1	837067	837496	D	uncharacterized protein	join(837067..837234,837314..837496)	Theileria parva strain Muguga	3503113
TpMuguga_01g02735	CDS	TpMuguga_01g02735	NC_007344.1	837750	839182	D	uncharacterized protein	join(837750..837906,838000..838041,838078..838099,838131..838157,838219..838258,838290..838355,838435..838500,838534..838827,838981..839049,839088..839124,839154..839182)	Theileria parva strain Muguga	3503115
TpMuguga_01g00413	CDS	RPL9	NC_007344.1	839347	840033	R	60S ribosomal protein L9-1	complement(join(839347..839870,839988..840033))	Theileria parva strain Muguga	3503116
TpMuguga_01g00414	CDS	TpMuguga_01g00414	NC_007344.1	840153	841489	R	Ribosomal protein S15 family protein	complement(join(840153..840289,840391..840483,840515..840581,840743..840792,840824..840994,841099..841489))	Theileria parva strain Muguga	3503117
TpMuguga_01g02865	CDS	TTC27	NC_007344.1	841675	845387	D	Tetratricopeptide repeat family protein	join(841675..842670,842761..843388,843459..843584,843672..843743,843801..843835,843867..843956,844022..844113,844204..844468,844618..844719,844761..844817,844914..845387)	Theileria parva strain Muguga	3503179
TpMuguga_01g02040	CDS	TpMuguga_01g02040	NC_007344.1	845674	846109	D	or RNP domain; RBD; RRM; RNA recognition motif family protein	join(845674..845772,845951..846109)	Theileria parva strain Muguga	86047608
TpMuguga_01g02325	CDS	TpMuguga_01g02325	NC_007344.1	846312	848672	R	uncharacterized protein	complement(join(846312..847270,847384..847485,847640..848672))	Theileria parva strain Muguga	3503180
TpMuguga_01g02830	CDS	TpMuguga_01g02830	NC_007344.1	848970	849398	R	Microsomal signal peptidase 12 kDa subunit (SPC12) family protein	complement(join(848970..849035,849132..849278,849345..849398))	Theileria parva strain Muguga	86047661
TpMuguga_01g00420	CDS	TpMuguga_01g00420	NC_007344.1	849521	852637	R	putative integral membrane protein	complement(849521..852637)	Theileria parva strain Muguga	3503182
TpMuguga_01g00421	CDS	TpMuguga_01g00421	NC_007344.1	853273	857769	D	RWD domain protein	join(853273..856089,856186..857769)	Theileria parva strain Muguga	3503184
TpMuguga_01g00422	CDS	prfA	NC_007344.1	857783	859415	D	RF-1 domain protein	join(857783..858145,858251..858301,858337..858392,858460..858538,858657..858827,858858..858922,859029..859137,859272..859415)	Theileria parva strain Muguga	3502856
TpMuguga_01g02800	CDS	TpMuguga_01g02800	NC_007344.1	859628	861086	D	Transcription factor TFIID TATA-binding protein TBP	join(859628..860018,860120..860655,860793..861086)	Theileria parva strain Muguga	3502858
TpMuguga_01g00425	CDS	TpMuguga_01g00425	NC_007344.1	861346	862035	D	Ubiquitin-fold modifier-conjugating enzyme 1 family protein	join(861346..861539,861571..861634,861775..861942,861973..862035)	Theileria parva strain Muguga	3502859
TpMuguga_01g00426	CDS	TpMuguga_01g00426	NC_007344.1	862148	863984	R	uncharacterized protein	complement(join(862148..863533,863679..863984))	Theileria parva strain Muguga	3502860
TpMuguga_01g02125	CDS	TpMuguga_01g02125	NC_007344.1	864706	869345	R	uncharacterized protein	complement(join(864706..867419,867544..867933,868052..869345))	Theileria parva strain Muguga	3502641
TpMuguga_01g00430	CDS	TpMuguga_01g00430	NC_007344.1	871384	874613	D	MIF4G like family protein	join(871384..871876,871952..872547,872641..872870,872987..874613)	Theileria parva strain Muguga	3502642
TpMuguga_01g00431	CDS	TpMuguga_01g00431	NC_007344.1	874695	876326	R	uncharacterized protein	complement(874695..876326)	Theileria parva strain Muguga	3502643
TpMuguga_01g00432	CDS	TpMuguga_01g00432	NC_007344.1	876754	877198	R	Leucine-rich repeat family protein	complement(join(876754..876810,876844..876933,876966..877090,877120..877198))	Theileria parva strain Muguga	3502644
TpMuguga_01g00433	CDS	TpMuguga_01g00433	NC_007344.1	877415	883005	R	GCC2 and GCC3 family protein	complement(join(877415..878323,878353..883005))	Theileria parva strain Muguga	3502646
TpMuguga_01g00434	CDS	TpMuguga_01g00434	NC_007344.1	883125	885656	R	uncharacterized protein	complement(join(883125..883220,883375..884822,884854..885543,885575..885656))	Theileria parva strain Muguga	3502647
TpMuguga_01g00435	CDS	TpMuguga_01g00435	NC_007344.1	886195	887313	R	uncharacterized protein	complement(join(886195..886280,887058..887313))	Theileria parva strain Muguga	3502428
TpMuguga_01g00436	CDS	TpMuguga_01g00436	NC_007344.1	887389	887942	R	uncharacterized protein	complement(join(887389..887663,887734..887871,887900..887942))	Theileria parva strain Muguga	3502429
TpMuguga_01g00437	CDS	TpMuguga_01g00437	NC_007344.1	888521	892620	R	GCC2 and GCC3 family protein	complement(join(888521..892056,892086..892620))	Theileria parva strain Muguga	3502430
TpMuguga_01g00438	CDS	TpMuguga_01g00438	NC_007344.1	892689	897029	R	uncharacterized protein	complement(892689..897029)	Theileria parva strain Muguga	3502431
TpMuguga_01g00439	CDS	GTF3C5	NC_007344.1	897444	898808	D	RNA polymerase III transcription factor (TF)IIIC subunit family protein	join(897444..897487,897523..897599,897632..898078,898108..898251,898280..898353,898384..898678,898711..898808)	Theileria parva strain Muguga	3502432
TpMuguga_01g00440	CDS	FPGS3	NC_007344.1	898865	900481	D	bifunctional protein FolC family protein	join(898865..899060,899098..899249,899290..899425,899458..899671,899711..899939,899976..900190,900233..900324,900357..900481)	Theileria parva strain Muguga	3502433
TpMuguga_01g02100	CDS	TpMuguga_01g02100	NC_007344.1	900471	908692	R	uncharacterized protein	complement(join(900471..901637,901758..904627,904743..907900,907932..908105,908135..908250,908281..908537,908593..908692))	Theileria parva strain Muguga	3502542
TpMuguga_01g02470	CDS	TpMuguga_01g02470	NC_007344.1	908810	909384	R	putative integral membrane protein	complement(join(908810..909004,909046..909384))	Theileria parva strain Muguga	86047635
TpMuguga_01g00443	CDS	TpMuguga_01g00443	NC_007344.1	909569	910641	D	uncharacterized protein	join(909569..910199,910229..910292,910324..910368,910407..910483,910523..910641)	Theileria parva strain Muguga	3502543
TpMuguga_01g00444	CDS	TpMuguga_01g00444	NC_007344.1	910715	912245	D	putative blood-stage antigen	join(910715..910777,910825..910908,910951..911013,911043..911123,911154..911230,911263..911329,911360..911404,911437..911530,911563..911615,911648..911802,911910..911973,912005..912046,912081..912245)	Theileria parva strain Muguga	3502544
TpMuguga_01g00445	CDS	Trit1	NC_007344.1	912281	913717	D	tRNA dimethylallyltransferase	join(912281..912502,912555..912692,912723..912828,912859..913069,913110..913194,913227..913269,913300..913347,913438..913620,913650..913717)	Theileria parva strain Muguga	3502545
TpMuguga_01g01232	CDS	TpMuguga_01g01232	NC_007344.1	913719	914421	R	or RNP domain; RBD; RRM; RNA recognition motif family protein	complement(join(913719..913939,913973..914258,914335..914421))	Theileria parva strain Muguga	3503078
TpMuguga_01g01233	CDS	TpMuguga_01g01233	NC_007344.1	914596	916695	D	uncharacterized protein	join(914596..914944,915035..916695)	Theileria parva strain Muguga	3503079
TpMuguga_01g00456	CDS	msh2	NC_007344.1	926391	929882	R	MutS domain V family protein	complement(join(926391..926534,926739..926884,927024..927126,927248..927362,927391..927506,927736..928859,928990..929232,929469..929604,929637..929882))	Theileria parva strain Muguga	3503084
TpMuguga_01g02000	CDS	TpMuguga_01g02000	NC_007344.1	930020	936353	R	uncharacterized protein	complement(join(930020..930083,930503..930878,931654..934963,935385..935574,935846..936135,936228..936353))	Theileria parva strain Muguga	3503572
TpMuguga_01g00459	CDS	DNLZ	NC_007344.1	936955	937800	D	DNL zinc finger family protein	join(936955..937111,937160..937278,937414..937465,937602..937700,937730..937800)	Theileria parva strain Muguga	3503573
TpMuguga_01g00460	CDS	Gars	NC_007344.1	938662	941286	R	glycine--tRNA ligase	complement(938662..941286)	Theileria parva strain Muguga	3503574
TpMuguga_01g00461	CDS	TpMuguga_01g00461	NC_007344.1	941763	942752	D	Cytokine-induced anti-apoptosis inhibitor 1 Fe-S biogenesis family protein	join(941763..942230,942267..942752)	Theileria parva strain Muguga	3503575
TpMuguga_01g00462	CDS	TpMuguga_01g00462	NC_007344.1	943229	944725	D	uncharacterized protein	943229..944725	Theileria parva strain Muguga	3503576
TpMuguga_01g00463	CDS	TpMuguga_01g00463	NC_007344.1	945832	947970	D	uncharacterized protein	945832..947970	Theileria parva strain Muguga	3503577
TpMuguga_01g00464	CDS	TpMuguga_01g00464	NC_007344.1	948456	950456	D	uncharacterized protein	948456..950456	Theileria parva strain Muguga	3503297
TpMuguga_01g00465	CDS	GCN5	NC_007344.1	950888	952783	R	Histone acetyltransferase GCN5	complement(950888..952783)	Theileria parva strain Muguga	3503298
TpMuguga_01g00466	CDS	dopey2	NC_007344.1	953211	961982	R	Protein dopey-2 protein	complement(join(953211..953494,953684..961982))	Theileria parva strain Muguga	3503299
TpMuguga_01g00467	CDS	TpMuguga_01g00467	NC_007344.1	962460	963692	R	Inner membrane complex family protein	complement(962460..963692)	Theileria parva strain Muguga	3503300
TpMuguga_01g00468	CDS	TpMuguga_01g00468	NC_007344.1	964188	966671	D	uncharacterized protein	join(964188..964470,964505..965293,965325..965416,965446..965513,965573..965707,965847..965937,965989..966179,966267..966515,966548..966671)	Theileria parva strain Muguga	3503301
TpMuguga_01g02430	CDS	TpMuguga_01g02430	NC_007344.1	966775	967135	D	putative integral membrane protein	join(966775..966918,966951..967046,967103..967135)	Theileria parva strain Muguga	3503302
TpMuguga_01g02490	CDS	ROM6	NC_007344.1	967490	969099	D	Rhomboid family protein	join(967490..968348,968381..968545,968614..969048,969083..969099)	Theileria parva strain Muguga	3503303
TpMuguga_01g00471	CDS	trxB/A	NC_007344.1	969241	970117	D	Thioredoxin family protein	join(969241..969483,969524..969718,969751..969809,969839..969872,969902..970117)	Theileria parva strain Muguga	3503372
TpMuguga_01g00472	CDS	TpMuguga_01g00472	NC_007344.1	970182	970545	R	uncharacterized protein	complement(join(970182..970316,970346..970404,970443..970509,970540..970545))	Theileria parva strain Muguga	3503373
TpMuguga_01g00473	CDS	TpMuguga_01g00473	NC_007344.1	971029	972009	R	uncharacterized protein	complement(join(971029..971313,971344..971445,971477..971579,971620..971899,971934..972009))	Theileria parva strain Muguga	3503374
TpMuguga_01g00474	CDS	TpMuguga_01g00474	NC_007344.1	972048	974709	R	uncharacterized protein	complement(join(972048..972140,972228..972348,972379..972739,972813..974709))	Theileria parva strain Muguga	3503375
TpMuguga_01g00475	CDS	TXNL1	NC_007344.1	975041	975780	D	PITH domain protein	join(975041..975057,975088..975359,975460..975485,975514..975604,975637..975710,975739..975780)	Theileria parva strain Muguga	3503376
TpMuguga_01g00476	CDS	TpMuguga_01g00476	NC_007344.1	975863	977111	R	aspartate carbamoyltransferase	complement(join(975863..976000,976057..976242,976305..977111))	Theileria parva strain Muguga	3503377
TpMuguga_01g00477	CDS	TpMuguga_01g00477	NC_007344.1	977477	978516	D	uncharacterized protein	join(977477..977489,978386..978516)	Theileria parva strain Muguga	3503378
TpMuguga_01g00478	CDS	TpMuguga_01g00478	NC_007344.1	979394	981766	D	uncharacterized protein	979394..981766	Theileria parva strain Muguga	3503379
TpMuguga_01g00479	CDS	hyou1	NC_007344.1	981927	985142	R	uncharacterized protein	complement(981927..985142)	Theileria parva strain Muguga	3503380
TpMuguga_01g00480	CDS	gcv1	NC_007344.1	985418	986765	R	Aminomethyltransferase folate-binding domain protein	complement(join(985418..985996,986028..986193,986224..986445,986476..986765))	Theileria parva strain Muguga	3503381
TpMuguga_01g00482	CDS	TpMuguga_01g00482	NC_007344.1	988019	991012	D	putative integral membrane protein	988019..991012	Theileria parva strain Muguga	3503383
TpMuguga_01g00483	CDS	PRPF4	NC_007344.1	991086	992672	R	WD domain G-beta repeat protein	complement(991086..992672)	Theileria parva strain Muguga	3503384
TpMuguga_01g00484	CDS	TpMuguga_01g00484	NC_007344.1	993537	1002516	D	N-terminal region of Chorein a TM vesicle-mediated sorter family protein	join(993537..993715,993770..993980,994016..996325,996391..996766,996833..1002516)	Theileria parva strain Muguga	3503285
TpMuguga_01g02390	CDS	TpMuguga_01g02390	NC_007344.1	1002765	1011003	D	putative integral membrane protein	join(1002765..1003191,1003222..1008192,1008304..1009016,1009047..1009338,1009439..1011003)	Theileria parva strain Muguga	3503287
TpMuguga_01g00488	CDS	Ivns1abp	NC_007344.1	1011260	1013389	D	Kelch motif family protein	join(1011260..1011631,1011811..1012247,1012322..1013187,1013334..1013389)	Theileria parva strain Muguga	3503289
TpMuguga_01g00489	CDS	UAP1	NC_007344.1	1013648	1015233	D	UTP--glucose-1-phosphate uridylyltransferase family protein	join(1013648..1014928,1014997..1015233)	Theileria parva strain Muguga	3503290
TpMuguga_01g00490	CDS	TpMuguga_01g00490	NC_007344.1	1015353	1017125	R	putative integral membrane protein	complement(join(1015353..1015903,1016037..1016999,1017032..1017125))	Theileria parva strain Muguga	3503444
TpMuguga_01g02135	CDS	TpMuguga_01g02135	NC_007344.1	1017786	1020045	D	AP2 domain protein	join(1017786..1019577,1019678..1020045)	Theileria parva strain Muguga	3503446
TpMuguga_01g00493	CDS	TpMuguga_01g00493	NC_007344.1	1020223	1020927	D	uncharacterized protein	1020223..1020927	Theileria parva strain Muguga	3503447
TpMuguga_01g00494	CDS	TpMuguga_01g00494	NC_007344.1	1021313	1023502	D	uncharacterized protein	1021313..1023502	Theileria parva strain Muguga	3503448
TpMuguga_01g00495	CDS	pckA	NC_007344.1	1023588	1025702	R	Phosphoenolpyruvate carboxykinase family protein	complement(join(1023588..1024714,1024822..1025175,1025271..1025391,1025562..1025702))	Theileria parva strain Muguga	3503449
TpMuguga_01g00496	CDS	Dis3	NC_007344.1	1026350	1030178	D	RNB domain protein	join(1026350..1026515,1026577..1026912,1026988..1027890,1027987..1028296,1028410..1028559,1028648..1028747,1028827..1028898,1028930..1029087,1029265..1029373,1029434..1029610,1029695..1029811,1029942..1030178)	Theileria parva strain Muguga	3503450
TpMuguga_01g00497	CDS	FCA	NC_007344.1	1030372	1031991	R	or RNP domain; RBD; RRM; uncharacterized protein	complement(1030372..1031991)	Theileria parva strain Muguga	3503330
TpMuguga_01g00498	CDS	ANGEL2	NC_007344.1	1033632	1035877	D	Endonuclease/Exonuclease/phosphatase family protein	join(1033632..1035671,1035821..1035877)	Theileria parva strain Muguga	3503331
TpMuguga_01g02295	CDS	TpMuguga_01g02295	NC_007344.1	1035951	1036325	R	uncharacterized protein	complement(1035951..1036325)	Theileria parva strain Muguga	86047625
TpMuguga_01g00499	CDS	TpMuguga_01g00499	NC_007344.1	1036376	1038848	R	putative integral membrane protein	complement(join(1036376..1036527,1036638..1036715,1036776..1036876,1036910..1036956,1037063..1037187,1037264..1037374,1037415..1037506,1037584..1037696,1037772..1037827,1037918..1038061,1038092..1038382,1038569..1038848))	Theileria parva strain Muguga	3503332
TpMuguga_01g00500	CDS	TpMuguga_01g00500	NC_007344.1	1039956	1042626	D	Myosin-A	join(1039956..1040054,1040122..1040256,1040389..1042626)	Theileria parva strain Muguga	3503333
TpMuguga_01g00501	CDS	TpMuguga_01g00501	NC_007344.1	1043416	1044080	D	uncharacterized protein	join(1043416..1043523,1043574..1043661,1043728..1044080)	Theileria parva strain Muguga	3503334
TpMuguga_01g00502	CDS	RPS13A	NC_007344.1	1044290	1044826	D	40S ribosomal protein S13-1	join(1044290..1044524,1044606..1044826)	Theileria parva strain Muguga	3503335
TpMuguga_01g00503	CDS	anon-84Ea	NC_007344.1	1044879	1046448	R	Riboflavin kinase family protein	complement(join(1044879..1045174,1045230..1045342,1045406..1045483,1045516..1045588,1045626..1045760,1045791..1046448))	Theileria parva strain Muguga	3503310
TpMuguga_01g00504	CDS	FKBP62	NC_007344.1	1046650	1049692	D	Peptidyl-prolyl cis-trans isomerase FKBP62	join(1046650..1046804,1046883..1046940,1047014..1047320,1047410..1047678,1047713..1047814,1047878..1048012,1048096..1048962,1049107..1049180,1049370..1049496,1049615..1049692)	Theileria parva strain Muguga	3503311
TpMuguga_01g00505	CDS	rps12	NC_007344.1	1050404	1051240	R	ribosomal protein S12	complement(1050404..1051240)	Theileria parva strain Muguga	3503312
TpMuguga_01g00506	CDS	TpMuguga_01g00506	NC_007344.1	1051476	1052384	D	emp24/gp25L/p24 family/GOLD family protein	join(1051476..1051632,1051803..1052080,1052136..1052384)	Theileria parva strain Muguga	3503313
TpMuguga_01g00507	CDS	MCM3	NC_007344.1	1052541	1055992	R	DNA replication licensing factor MCM3	complement(join(1052541..1053726,1053869..1054142,1054299..1055177,1055302..1055992))	Theileria parva strain Muguga	3503314
TpMuguga_01g00508	CDS	UBC36	NC_007344.1	1056310	1056946	D	Ubiquitin-conjugating enzyme E2 35	join(1056310..1056361,1056540..1056946)	Theileria parva strain Muguga	3503315
TpMuguga_01g00509	CDS	TpMuguga_01g00509	NC_007344.1	1057087	1059255	R	putative integral membrane protein	complement(join(1057087..1057467,1057513..1057603,1057689..1057924,1058010..1058384,1058452..1058537,1058607..1059108,1059202..1059255))	Theileria parva strain Muguga	3503172
TpMuguga_01g02850	CDS	TpMuguga_01g02850	NC_007344.1	1059480	1059673	D	putative integral membrane protein	join(1059480..1059485,1059518..1059673)	Theileria parva strain Muguga	86047664
TpMuguga_01g02755	CDS	TpMuguga_01g02755	NC_007344.1	1059711	1060457	D	uncharacterized protein	join(1059711..1059752,1059814..1059888,1059929..1060075,1060105..1060327,1060384..1060457)	Theileria parva strain Muguga	3503173
TpMuguga_01g00511	CDS	TpMuguga_01g00511	NC_007344.1	1061948	1067634	D	uncharacterized protein	join(1061948..1066836,1066962..1067086,1067201..1067634)	Theileria parva strain Muguga	3503174
TpMuguga_01g00512	CDS	TpMuguga_01g00512	NC_007344.1	1067758	1068414	R	putative integral membrane protein	complement(join(1067758..1067983,1068047..1068173,1068330..1068414))	Theileria parva strain Muguga	3503175
TpMuguga_01g00513	CDS	TpMuguga_01g00513	NC_007344.1	1068487	1069284	R	uncharacterized protein	complement(join(1068487..1068645,1068719..1068964,1069075..1069284))	Theileria parva strain Muguga	3503176
TpMuguga_01g00514	CDS	ANK2	NC_007344.1	1069608	1071417	R	Ankyrin repeats (3 copies) family protein	complement(join(1069608..1069787,1069853..1069975,1070035..1070343,1070437..1070787,1070851..1071417))	Theileria parva strain Muguga	3503177
TpMuguga_01g00515	CDS	TpMuguga_01g00515	NC_007344.1	1071695	1074503	R	Peptidase family M3 family protein	complement(join(1071695..1071775,1071808..1071892,1071924..1072120,1072156..1072313,1072349..1072414,1072499..1072900,1072949..1073189,1073221..1073287,1073336..1073427,1073476..1073536,1073569..1073717,1073764..1073883,1073932..1074025,1074058..1074503))	Theileria parva strain Muguga	3502966
TpMuguga_01g00516	CDS	dxs	NC_007344.1	1074753	1077115	D	1-deoxy-D-xylulose-5-phosphate synthase family protein	join(1074753..1076960,1076990..1077115)	Theileria parva strain Muguga	3502967
TpMuguga_01g00517	CDS	TpMuguga_01g00517	NC_007344.1	1077171	1077952	R	putative C2HC5-type zinc finger motif protein	complement(join(1077171..1077241,1077299..1077451,1077485..1077670,1077811..1077952))	Theileria parva strain Muguga	3502968
TpMuguga_01g00518	CDS	WARS	NC_007344.1	1078271	1080628	D	tryptophan--tRNA ligase	join(1078271..1078390,1078476..1078568,1078599..1078708,1078773..1078896,1078927..1079162,1079230..1079384,1079453..1079859,1079983..1080190,1080313..1080515,1080545..1080628)	Theileria parva strain Muguga	3502969
TpMuguga_01g02640	CDS	nudc	NC_007344.1	1080747	1082384	R	CS domain protein	complement(join(1080747..1080932,1081052..1081212,1081469..1081602,1081636..1082384))	Theileria parva strain Muguga	3502970
TpMuguga_01g02095	CDS	TpMuguga_01g02095	NC_007344.1	1082707	1083117	R	uncharacterized protein	complement(1082707..1083117)	Theileria parva strain Muguga	86047612
TpMuguga_01g00520	CDS	ACSL5	NC_007344.1	1083729	1086759	D	AMP-binding enzyme family protein	join(1083729..1083774,1083931..1084015,1084077..1084420,1084514..1084846,1084936..1085310,1085384..1085478,1085510..1085661,1085850..1085939,1085969..1086056,1086088..1086177,1086309..1086437,1086546..1086686,1086718..1086759)	Theileria parva strain Muguga	3502921
TpMuguga_01g00521	CDS	TpMuguga_01g00521	NC_007344.1	1086828	1087874	D	Aminomethyltransferase folate-binding domain protein	1086828..1087874	Theileria parva strain Muguga	3502922
TpMuguga_01g00522	CDS	TpMuguga_01g00522	NC_007344.1	1087980	1088874	R	putative integral membrane protein	complement(join(1087980..1088615,1088734..1088793,1088827..1088874))	Theileria parva strain Muguga	3502923
TpMuguga_01g00523	CDS	TpMuguga_01g00523	NC_007344.1	1089592	1090494	D	uncharacterized protein	join(1089592..1089706,1089843..1090009,1090114..1090494)	Theileria parva strain Muguga	3502924
TpMuguga_01g00524	CDS	TpMuguga_01g00524	NC_007344.1	1090839	1091244	D	putative integral membrane protein	join(1090839..1090884,1090961..1091042,1091163..1091244)	Theileria parva strain Muguga	3502925
TpMuguga_01g02250	CDS	TpMuguga_01g02250	NC_007344.1	1091284	1091928	D	uncharacterized protein	join(1091284..1091437,1091501..1091928)	Theileria parva strain Muguga	86047623
TpMuguga_01g00525	CDS	TpMuguga_01g00525	NC_007344.1	1091969	1092799	R	uncharacterized protein	complement(join(1091969..1092082,1092134..1092799))	Theileria parva strain Muguga	3502718
TpMuguga_01g00526	CDS	TpMuguga_01g00526	NC_007344.1	1093294	1094097	D	Snare region anchored in the vesicle membrane C-terminus family protein	join(1093294..1093674,1093822..1094097)	Theileria parva strain Muguga	3502719
TpMuguga_01g00527	CDS	Sir2B	NC_007344.1	1094252	1097568	R	Sir2 family protein	complement(join(1094252..1095676,1095772..1096349,1096586..1097305,1097406..1097568))	Theileria parva strain Muguga	3502720
TpMuguga_01g00528	CDS	TpMuguga_01g00528	NC_007344.1	1097731	1098658	R	Zinc-finger of the MIZ type in Nse subunit family protein	complement(join(1097731..1097887,1097991..1098279,1098325..1098423,1098535..1098658))	Theileria parva strain Muguga	3502721
TpMuguga_01g00529	CDS	eef-2	NC_007344.1	1098962	1102009	R	Elongation factor 2	complement(join(1098962..1099279,1099533..1101713,1102007..1102009))	Theileria parva strain Muguga	3502722
TpMuguga_01g00530	CDS	TpMuguga_01g00530	NC_007344.1	1102748	1103713	D	cwf21 domain protein	join(1102748..1103085,1103149..1103713)	Theileria parva strain Muguga	3502723
TpMuguga_01g00531	CDS	TpMuguga_01g00531	NC_007344.1	1104289	1104852	D	uncharacterized protein	1104289..1104852	Theileria parva strain Muguga	3502724
TpMuguga_01g00532	CDS	TpMuguga_01g00532	NC_007344.1	1105016	1106267	R	putative integral membrane protein	complement(join(1105016..1105476,1105506..1105601,1105910..1106267))	Theileria parva strain Muguga	3502580
TpMuguga_01g00533	CDS	TpMuguga_01g00533	NC_007344.1	1106599	1109886	D	uncharacterized protein	1106599..1109886	Theileria parva strain Muguga	3502581
TpMuguga_01g00534	CDS	Faim2	NC_007344.1	1110722	1111788	R	Inhibitor of apoptosis-promoting Bax1 family protein	complement(join(1110722..1110990,1111095..1111538,1111629..1111788))	Theileria parva strain Muguga	3502582
TpMuguga_01g00535	CDS	TMBIM1	NC_007344.1	1112036	1113287	R	Inhibitor of apoptosis-promoting Bax1 family protein	complement(join(1112036..1112635,1113064..1113164,1113230..1113287))	Theileria parva strain Muguga	3502583
TpMuguga_01g00536	CDS	pus10	NC_007344.1	1113689	1115970	R	putative tRNA pseudouridine synthase Pus10	complement(join(1113689..1113804,1113833..1114691,1115089..1115970))	Theileria parva strain Muguga	3502584
TpMuguga_01g00537	CDS	TpMuguga_01g00537	NC_007344.1	1116160	1116756	D	uncharacterized protein	1116160..1116756	Theileria parva strain Muguga	3502585
TpMuguga_01g00538	CDS	TpMuguga_01g00538	NC_007344.1	1117116	1120106	D	uncharacterized protein	1117116..1120106	Theileria parva strain Muguga	3502586
TpMuguga_01g00539	CDS	TpMuguga_01g00539	NC_007344.1	1121214	1127749	D	uncharacterized protein	join(1121214..1127629,1127701..1127749)	Theileria parva strain Muguga	3502495
TpMuguga_01g00540	CDS	TpMuguga_01g00540	NC_007344.1	1127880	1129529	D	uncharacterized protein	1127880..1129529	Theileria parva strain Muguga	3502496
TpMuguga_01g00541	CDS	TpMuguga_01g00541	NC_007344.1	1129986	1130615	R	uncharacterized protein	complement(1129986..1130615)	Theileria parva strain Muguga	3502497
TpMuguga_01g00542	CDS	TpMuguga_01g00542	NC_007344.1	1131364	1133371	R	GLE1-like family protein	complement(join(1131364..1131439,1131648..1131757,1131863..1133371))	Theileria parva strain Muguga	3502498
TpMuguga_01g00543	CDS	spt4	NC_007344.1	1133663	1134533	D	Transcription elongation factor SPT4 domain protein	join(1133663..1133675,1133741..1133813,1133845..1133953,1134198..1134345,1134454..1134533)	Theileria parva strain Muguga	3502499
TpMuguga_01g00544	CDS	Dhx8	NC_007344.1	1134641	1140651	R	Oligonucleotide/oligosaccharide-binding (OB)-fold family protein	complement(join(1134641..1134717,1134763..1134908,1135127..1135368,1135650..1135880,1136001..1136130,1136365..1136599,1136633..1136692,1136956..1137162,1137445..1137667,1137863..1137928,1138245..1139008,1139268..1139715,1139929..1140041,1140182..1140329,1140565..1140651))	Theileria parva strain Muguga	3502500
TpMuguga_01g00545	CDS	TpMuguga_01g00545	NC_007344.1	1140922	1142964	D	WD domain G-beta repeat protein	join(1140922..1141285,1141635..1142724,1142946..1142964)	Theileria parva strain Muguga	3503436
TpMuguga_01g00546	CDS	CHKB	NC_007344.1	1143429	1145061	D	Choline/ethanolamine kinase family protein	join(1143429..1144738,1144953..1145061)	Theileria parva strain Muguga	3503437
TpMuguga_01g01229	CDS	TpMuguga_01g01229	NC_007344.1	1145664	1147325	R	putative integral membrane protein	complement(join(1145664..1146451,1146509..1147325))	Theileria parva strain Muguga	3503438
TpMuguga_01g02515	CDS	TpMuguga_01g02515	NC_007344.1	1149527	1152512	D	putative integral membrane protein	join(1149527..1150349,1151170..1152512)	Theileria parva strain Muguga	3503440
TpMuguga_01g00551	CDS	TpMuguga_01g00551	NC_007344.1	1153210	1155345	D	uncharacterized protein	1153210..1155345	Theileria parva strain Muguga	3503441
TpMuguga_01g00552	CDS	TpMuguga_01g00552	NC_007344.1	1155554	1158399	R	uncharacterized protein	complement(join(1155554..1156284,1156478..1157534,1158370..1158399))	Theileria parva strain Muguga	3503442
TpMuguga_01g00553	CDS	TpMuguga_01g00553	NC_007344.1	1158542	1159747	R	transcription elongation factor S-II protein	complement(join(1158542..1159435,1159667..1159747))	Theileria parva strain Muguga	3503443
TpMuguga_01g00554	CDS	TpMuguga_01g00554	NC_007344.1	1159973	1162029	D	uncharacterized protein	join(1159973..1160208,1160412..1160586,1160878..1162029)	Theileria parva strain Muguga	3503520
TpMuguga_01g00555	CDS	TpMuguga_01g00555	NC_007344.1	1162462	1163183	D	uncharacterized protein	join(1162462..1162491,1162773..1163183)	Theileria parva strain Muguga	3503521
TpMuguga_01g00556	CDS	NEP1	NC_007344.1	1163404	1164472	R	EMG1/NEP1 methyltransferase family protein	complement(join(1163404..1163667,1163939..1164100,1164332..1164394,1164425..1164472))	Theileria parva strain Muguga	3503522
TpMuguga_01g00557	CDS	TpMuguga_01g00557	NC_007344.1	1164608	1167488	D	uncharacterized protein	join(1164608..1164803,1165009..1165050,1165240..1165530,1165597..1167010,1167290..1167488)	Theileria parva strain Muguga	3503523
TpMuguga_01g00558	CDS	EPN2	NC_007344.1	1168779	1170197	R	ENTH domain protein	complement(1168779..1170197)	Theileria parva strain Muguga	3503524
TpMuguga_01g00559	CDS	TpMuguga_01g00559	NC_007344.1	1170945	1172063	R	uncharacterized protein	complement(join(1170945..1171554,1171865..1171929,1172031..1172063))	Theileria parva strain Muguga	3503525
TpMuguga_01g00560	CDS	RPL3	NC_007344.1	1172324	1174097	D	60S ribosomal protein L3	join(1172324..1172890,1173510..1174097)	Theileria parva strain Muguga	3503558
TpMuguga_01g00561	CDS	TpMuguga_01g00561	NC_007344.1	1174842	1177301	D	uncharacterized protein	1174842..1177301	Theileria parva strain Muguga	3503559
TpMuguga_01g00562	CDS	TpMuguga_01g00562	NC_007344.1	1177962	1178972	R	uncharacterized protein	complement(join(1177962..1177994,1178688..1178972))	Theileria parva strain Muguga	3503560
TpMuguga_01g00563	CDS	TpMuguga_01g00563	NC_007344.1	1179058	1180583	D	putative integral membrane protein	join(1179058..1179541,1179886..1180583)	Theileria parva strain Muguga	3503561
TpMuguga_01g00564	CDS	TpMuguga_01g00564	NC_007344.1	1180841	1181329	D	uncharacterized protein	1180841..1181329	Theileria parva strain Muguga	3503562
TpMuguga_01g00565	CDS	TpMuguga_01g00565	NC_007344.1	1181654	1183871	R	Josephin family protein	complement(join(1181654..1181734,1181840..1181971,1182198..1182290,1182497..1182803,1183050..1183121,1183151..1183233,1183395..1183465,1183620..1183701,1183791..1183871))	Theileria parva strain Muguga	3503563
TpMuguga_01g00566	CDS	TpMuguga_01g00566	NC_007344.1	1183993	1186484	R	Brix domain protein	complement(join(1183993..1184249,1184747..1185091,1185268..1185492,1186283..1186484))	Theileria parva strain Muguga	3503564
TpMuguga_01g00567	CDS	TpMuguga_01g00567	NC_007344.1	1186697	1187740	D	Eukaryotic rRNA processing protein EBP2 family protein	join(1186697..1186754,1186835..1186903,1186969..1187119,1187168..1187216,1187459..1187740)	Theileria parva strain Muguga	3503592
TpMuguga_01g00568	CDS	trm9	NC_007344.1	1187861	1189132	R	Methyltransferase domain protein	complement(join(1187861..1188098,1188155..1188220,1188333..1188620,1188990..1189132))	Theileria parva strain Muguga	3503593
TpMuguga_01g00569	CDS	Zdhhc15	NC_007344.1	1189183	1190985	R	DHHC palmitoyltransferase family protein	complement(join(1189183..1189269,1189340..1189442,1189472..1189504,1189701..1189891,1190062..1190107,1190135..1190195,1190408..1190464,1190536..1190607,1190640..1190730,1190868..1190912,1190944..1190985))	Theileria parva strain Muguga	3503594
TpMuguga_01g00570	CDS	ZCCHC9	NC_007344.1	1191246	1191925	R	Zinc knuckle family protein	complement(join(1191246..1191425,1191484..1191596,1191625..1191925))	Theileria parva strain Muguga	3503595
TpMuguga_01g02555	CDS	TpMuguga_01g02555	NC_007344.1	1192534	1195775	R	uncharacterized protein	complement(join(1192534..1193528,1194260..1195775))	Theileria parva strain Muguga	3503597
TpMuguga_01g02580	CDS	TpMuguga_01g02580	NC_007344.1	1196311	1196484	R	uncharacterized protein	complement(1196311..1196484)	Theileria parva strain Muguga	86047644
TpMuguga_01g00573	CDS	TpMuguga_01g00573	NC_007344.1	1196827	1197443	D	putative integral membrane protein	join(1196827..1197030,1197339..1197443)	Theileria parva strain Muguga	3503609
TpMuguga_01g00574	CDS	TpMuguga_01g00574	NC_007344.1	1197467	1197956	R	putative integral membrane protein	complement(join(1197467..1197494,1197524..1197629,1197764..1197956))	Theileria parva strain Muguga	3503610
TpMuguga_01g02315	CDS	TpMuguga_01g02315	NC_007344.1	1198221	1198361	R	uncharacterized protein	complement(1198221..1198361)	Theileria parva strain Muguga	86047627
TpMuguga_01g00575	CDS	TpMuguga_01g00575	NC_007344.1	1198532	1203813	R	putative integral membrane protein	complement(join(1198532..1203624,1203735..1203813))	Theileria parva strain Muguga	3503611
TpMuguga_01g02270	CDS	TpMuguga_01g02270	NC_007344.1	1204446	1208184	R	putative integral membrane protein	complement(join(1204446..1204563,1204715..1208184))	Theileria parva strain Muguga	3503612
TpMuguga_01g02010	CDS	TpMuguga_01g02010	NC_007344.1	1209185	1209587	D	uncharacterized protein	join(1209185..1209246,1209277..1209342,1209479..1209587)	Theileria parva strain Muguga	86047606
TpMuguga_01g02820	CDS	TpMuguga_01g02820	NC_007344.1	1209685	1211990	R	uncharacterized protein	complement(join(1209685..1210155,1210278..1211990))	Theileria parva strain Muguga	86047660
TpMuguga_01g02360	CDS	TpMuguga_01g02360	NC_007344.1	1212015	1212986	R	or RNP domain; RBD; RRM; RNA recognition motif family protein	complement(join(1212015..1212730,1212810..1212922,1212955..1212986))	Theileria parva strain Muguga	3503613
TpMuguga_01g01230	CDS	TpMuguga_01g01230	NC_007344.1	1213412	1215147	D	RAP domain protein	join(1213412..1213527,1213559..1213684,1213714..1213788,1213849..1214002,1214033..1214113,1214197..1214357,1214389..1214517,1214564..1214791,1214881..1214976,1215033..1215147)	Theileria parva strain Muguga	3503614
TpMuguga_01g01231	CDS	PAE2	NC_007344.1	1215245	1216424	D	putative proteasome subunit alpha type-5	join(1215245..1215258,1215294..1215652,1215742..1215951,1216243..1216424)	Theileria parva strain Muguga	3502629
TpMuguga_01g00578	CDS	TpMuguga_01g00578	NC_007344.1	1216655	1218874	D	uncharacterized protein	join(1216655..1217833,1217943..1218376,1218481..1218874)	Theileria parva strain Muguga	3502630
TpMuguga_01g00579	CDS	TpMuguga_01g00579	NC_007344.1	1218944	1220950	R	uncharacterized protein	complement(1218944..1220950)	Theileria parva strain Muguga	3502631
TpMuguga_01g00580	CDS	TpMuguga_01g00580	NC_007344.1	1221434	1222939	D	putative integral membrane protein	join(1221434..1222797,1222822..1222939)	Theileria parva strain Muguga	3502632
TpMuguga_01g02210	CDS	TpMuguga_01g02210	NC_007344.1	1222995	1223417	R	Ribosomal protein L33 family protein	complement(join(1222995..1223214,1223251..1223417))	Theileria parva strain Muguga	86047619
TpMuguga_01g00581	CDS	sun2	NC_007344.1	1223615	1226407	D	Sad1 / UNC-like C-terminal family protein	join(1223615..1224069,1224101..1225733,1225796..1226407)	Theileria parva strain Muguga	3502633
TpMuguga_01g00582	CDS	Ascc3	NC_007344.1	1226712	1233515	R	Sec63 Brl domain protein	complement(join(1226712..1226820,1226850..1227009,1227104..1227269,1227300..1227847,1227978..1228251,1228290..1228355,1228432..1228556,1228807..1229199,1229232..1231382,1231466..1231743,1231860..1232018,1232110..1232657,1232783..1233381,1233413..1233515))	Theileria parva strain Muguga	3502634
TpMuguga_01g00584	CDS	NFYC3	NC_007344.1	1234480	1235415	D	Histone-like transcription factor (CBF/NF-Y) and archaeal histone family protein	join(1234480..1234546,1234588..1234670,1234702..1234815,1234847..1234957,1235041..1235415)	Theileria parva strain Muguga	3502655
TpMuguga_01g00585	CDS	TpMuguga_01g00585	NC_007344.1	1235535	1236211	R	uncharacterized protein	complement(join(1235535..1235558,1235617..1235741,1235773..1235843,1235873..1235959,1235994..1236211))	Theileria parva strain Muguga	3502656
TpMuguga_01g00586	CDS	Camkk1	NC_007344.1	1236961	1238508	D	Protein kinase domain protein	1236961..1238508	Theileria parva strain Muguga	3502657
TpMuguga_01g00587	CDS	TpMuguga_01g00587	NC_007344.1	1238678	1240791	R	putative integral membrane protein	complement(join(1238678..1239969,1240044..1240169,1240200..1240329,1240360..1240791))	Theileria parva strain Muguga	3502658
TpMuguga_01g00588	CDS	TpMuguga_01g00588	NC_007344.1	1241380	1241807	D	uncharacterized protein	join(1241380..1241472,1241509..1241612,1241647..1241720,1241752..1241807)	Theileria parva strain Muguga	3502659
TpMuguga_01g00589	CDS	TpMuguga_01g00589	NC_007344.1	1241827	1242317	D	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	join(1241827..1241867,1241897..1241947,1241978..1242100,1242131..1242317)	Theileria parva strain Muguga	3502524
TpMuguga_01g00590	CDS	TpMuguga_01g00590	NC_007344.1	1246098	1247507	R	uncharacterized protein	complement(1246098..1247507)	Theileria parva strain Muguga	3502525
TpMuguga_01g00591	CDS	U2af2	NC_007344.1	1247984	1249279	R	Splicing factor U2AF 65 kDa subunit	complement(1247984..1249279)	Theileria parva strain Muguga	3502526
TpMuguga_01g02835	CDS	EIF2B3	NC_007344.1	1249580	1251210	R	Nucleotidyl transferase family protein	complement(join(1249580..1249669,1249702..1249835,1249869..1249938,1249968..1250209,1250245..1250296,1250326..1250927,1251027..1251210))	Theileria parva strain Muguga	3502528
TpMuguga_01g00594	CDS	TpMuguga_01g00594	NC_007344.1	1252125	1255605	D	uncharacterized protein	join(1252125..1252253,1252338..1252557,1252648..1254041,1254113..1254893,1255093..1255242,1255278..1255376,1255457..1255605)	Theileria parva strain Muguga	3502529
TpMuguga_01g00595	CDS	TPS5	NC_007344.1	1256206	1259895	D	Trehalose-phosphatase	join(1256206..1256572,1256689..1258085,1258224..1258829,1258989..1259407,1259505..1259895)	Theileria parva strain Muguga	3502827
TpMuguga_01g00596	CDS	TpMuguga_01g00596	NC_007344.1	1260352	1261206	D	uncharacterized protein	join(1260352..1260450,1260490..1260552,1260652..1260759,1260791..1260841,1260872..1260928,1260989..1261048,1261078..1261206)	Theileria parva strain Muguga	3502828
TpMuguga_01g00597	CDS	TpMuguga_01g00597	NC_007344.1	1261263	1261729	R	Translation initiation factor 1A / IF-1 family protein	complement(join(1261263..1261278,1261310..1261425,1261457..1261729))	Theileria parva strain Muguga	3502829
TpMuguga_01g00598	CDS	TpMuguga_01g00598	NC_007344.1	1262582	1264792	D	uncharacterized protein	join(1262582..1262631,1262721..1262784,1262816..1262914,1262993..1263094,1263125..1263650,1263762..1264582,1264730..1264792)	Theileria parva strain Muguga	3502830
TpMuguga_01g02510	CDS	COG4	NC_007344.1	1264931	1267910	D	COG4 transport family protein	join(1264931..1266472,1266611..1266698,1266733..1266843,1266930..1267042,1267111..1267188,1267219..1267335,1267403..1267531,1267751..1267820,1267849..1267910)	Theileria parva strain Muguga	3503131
TpMuguga_01g00601	CDS	ECR1	NC_007344.1	1267950	1269589	R	ThiF family protein	complement(join(1267950..1268034,1268065..1268135,1268182..1268307,1268357..1268506,1268538..1268710,1268743..1268797,1268855..1269137,1269201..1269281,1269314..1269419,1269538..1269589))	Theileria parva strain Muguga	3503132
TpMuguga_01g00602	CDS	TpMuguga_01g00602	NC_007344.1	1270087	1273188	D	putative integral membrane protein	1270087..1273188	Theileria parva strain Muguga	3503133
TpMuguga_01g00603	CDS	TpMuguga_01g00603	NC_007344.1	1273607	1274623	D	uncharacterized protein	1273607..1274623	Theileria parva strain Muguga	3503134
TpMuguga_01g00604	CDS	TpMuguga_01g00604	NC_007344.1	1275081	1276478	D	uncharacterized protein	1275081..1276478	Theileria parva strain Muguga	3503135
TpMuguga_01g00605	CDS	TpMuguga_01g00605	NC_007344.1	1276896	1277744	D	uncharacterized protein	1276896..1277744	Theileria parva strain Muguga	3503136
TpMuguga_01g00606	CDS	TpMuguga_01g00606	NC_007344.1	1278261	1279394	D	uncharacterized protein	join(1278261..1279080,1279162..1279394)	Theileria parva strain Muguga	3503137
TpMuguga_01g00607	CDS	TpMuguga_01g00607	NC_007344.1	1279822	1280751	D	uncharacterized protein	1279822..1280751	Theileria parva strain Muguga	3503578
TpMuguga_01g00608	CDS	TpMuguga_01g00608	NC_007344.1	1281157	1282341	D	uncharacterized protein	1281157..1282341	Theileria parva strain Muguga	3503579
TpMuguga_01g00609	CDS	TpMuguga_01g00609	NC_007344.1	1282780	1283595	D	uncharacterized protein	1282780..1283595	Theileria parva strain Muguga	3503580
TpMuguga_01g00610	CDS	TpMuguga_01g00610	NC_007344.1	1284056	1285000	D	uncharacterized protein	1284056..1285000	Theileria parva strain Muguga	3503581
TpMuguga_01g00611	CDS	TpMuguga_01g00611	NC_007344.1	1285372	1286358	D	uncharacterized protein	1285372..1286358	Theileria parva strain Muguga	3503582
TpMuguga_01g00612	CDS	TpMuguga_01g00612	NC_007344.1	1286812	1287738	D	uncharacterized protein	1286812..1287738	Theileria parva strain Muguga	3503583
TpMuguga_01g00613	CDS	TpMuguga_01g00613	NC_007344.1	1288166	1289464	D	uncharacterized protein	1288166..1289464	Theileria parva strain Muguga	3503584
TpMuguga_01g00614	CDS	TpMuguga_01g00614	NC_007344.1	1289995	1290864	D	uncharacterized protein	1289995..1290864	Theileria parva strain Muguga	3503585
TpMuguga_01g00615	CDS	TpMuguga_01g00615	NC_007344.1	1291352	1292773	D	uncharacterized protein	1291352..1292773	Theileria parva strain Muguga	3503536
TpMuguga_01g00616	CDS	TpMuguga_01g00616	NC_007344.1	1293165	1294112	D	uncharacterized protein	1293165..1294112	Theileria parva strain Muguga	3503537
TpMuguga_01g00617	CDS	TpMuguga_01g00617	NC_007344.1	1294567	1295847	D	uncharacterized protein	1294567..1295847	Theileria parva strain Muguga	3503538
TpMuguga_01g00618	CDS	TpMuguga_01g00618	NC_007344.1	1296278	1297396	D	uncharacterized protein	1296278..1297396	Theileria parva strain Muguga	3503539
TpMuguga_01g00619	CDS	TpMuguga_01g00619	NC_007344.1	1297886	1298500	D	uncharacterized protein	1297886..1298500	Theileria parva strain Muguga	3503540
TpMuguga_01g00620	CDS	TpMuguga_01g00620	NC_007344.1	1299094	1302429	D	uncharacterized protein	1299094..1302429	Theileria parva strain Muguga	3503541
TpMuguga_01g00621	CDS	TpMuguga_01g00621	NC_007344.1	1302747	1304708	D	uncharacterized protein	1302747..1304708	Theileria parva strain Muguga	3503542
TpMuguga_01g00622	CDS	ATG18A	NC_007344.1	1305003	1307013	R	Autophagy-related protein 18a	complement(join(1305003..1305150,1305222..1305888,1306080..1306222,1306405..1306648,1306902..1307013))	Theileria parva strain Muguga	3503543
TpMuguga_01g00623	CDS	TpMuguga_01g00623	NC_007344.1	1307241	1307558	R	uncharacterized protein	complement(1307241..1307558)	Theileria parva strain Muguga	3503457
TpMuguga_01g00624	CDS	TpMuguga_01g00624	NC_007344.1	1307747	1308924	D	uncharacterized protein	join(1307747..1308027,1308192..1308344,1308468..1308549,1308670..1308924)	Theileria parva strain Muguga	3503458
TpMuguga_01g00625	CDS	TpMuguga_01g00625	NC_007344.1	1309229	1309830	D	uncharacterized protein	join(1309229..1309282,1309315..1309396,1309527..1309546,1309581..1309613,1309744..1309830)	Theileria parva strain Muguga	3503459
TpMuguga_01g00626	CDS	TpMuguga_01g00626	NC_007344.1	1309967	1310944	D	uncharacterized protein	join(1309967..1310394,1310426..1310522,1310737..1310793,1310825..1310944)	Theileria parva strain Muguga	3503460
TpMuguga_01g02825	CDS	TpMuguga_01g02825	NC_007344.1	1311023	1315772	R	MIF4G domain protein	complement(join(1311023..1311323,1311567..1311688,1311934..1312064,1312259..1315772))	Theileria parva strain Muguga	3503461
TpMuguga_01g00630	CDS	TBP	NC_007344.1	1316387	1317444	R	TATA-box-binding protein	complement(join(1316387..1316541,1316649..1316852,1316965..1317156,1317327..1317444))	Theileria parva strain Muguga	3503403
TpMuguga_01g00631	CDS	TpMuguga_01g00631	NC_007344.1	1317738	1319474	D	uncharacterized protein	1317738..1319474	Theileria parva strain Muguga	3503404
TpMuguga_01g02730	CDS	TpMuguga_01g02730	NC_007344.1	1319577	1319882	R	uncharacterized protein	complement(1319577..1319882)	Theileria parva strain Muguga	86047653
TpMuguga_01g00632	CDS	ZNF207	NC_007344.1	1319999	1321257	D	Zinc finger protein 207	join(1319999..1320172,1320344..1321030,1321204..1321257)	Theileria parva strain Muguga	3503405
TpMuguga_01g02380	CDS	TpMuguga_01g02380	NC_007344.1	1321460	1322098	R	uncharacterized protein	complement(1321460..1322098)	Theileria parva strain Muguga	86047631
TpMuguga_01g00633	CDS	ADK1	NC_007344.1	1322359	1323514	R	Adenylate kinase 3	complement(join(1322359..1322397,1322431..1322763,1322890..1323030,1323157..1323261,1323395..1323514))	Theileria parva strain Muguga	3503406
TpMuguga_01g00634	CDS	Dph5	NC_007344.1	1323896	1325221	D	diphthine synthase	join(1323896..1324033,1324181..1324305,1324460..1324568,1324604..1324791,1324914..1324978,1325040..1325221)	Theileria parva strain Muguga	3503407
TpMuguga_01g00635	CDS	Trmt11	NC_007344.1	1325260	1327331	R	putative RNA methylase family UPF0020 family protein	complement(join(1325260..1325297,1325329..1325405,1325476..1325638,1325764..1325818,1325850..1325929,1325960..1326045,1326169..1326248,1326348..1326551,1326629..1326862,1327008..1327331))	Theileria parva strain Muguga	3503408
TpMuguga_01g02540	CDS	TpMuguga_01g02540	NC_007344.1	1327514	1328057	D	uncharacterized protein	join(1327514..1327808,1328005..1328057)	Theileria parva strain Muguga	86047641
TpMuguga_01g02220	CDS	TpMuguga_01g02220	NC_007344.1	1328182	1328743	D	or RNP domain; RBD; RRM; RNA recognition motif family protein	join(1328182..1328241,1328309..1328390,1328472..1328568,1328638..1328743)	Theileria parva strain Muguga	3503361
TpMuguga_01g02225	CDS	TpMuguga_01g02225	NC_007344.1	1328755	1329510	D	Elongation factor P (EF-P) KOW-like domain protein	join(1328755..1328857,1328898..1328962,1329113..1329182,1329217..1329354,1329425..1329510)	Theileria parva strain Muguga	3503362
TpMuguga_01g00639	CDS	RAB5B	NC_007344.1	1329787	1330994	D	Ras-related protein Rab-5A	join(1329787..1330000,1330164..1330233,1330335..1330373,1330405..1330517,1330549..1330598,1330717..1330810,1330894..1330994)	Theileria parva strain Muguga	3503364
TpMuguga_01g00640	CDS	TpMuguga_01g00640	NC_007344.1	1331847	1337375	R	uncharacterized protein	complement(1331847..1337375)	Theileria parva strain Muguga	3503365
TpMuguga_01g00641	CDS	dhx16	NC_007344.1	1338890	1342124	R	Oligonucleotide/oligosaccharide-binding (OB)-fold family protein	complement(join(1338890..1339776,1339845..1340042,1340132..1340349,1340410..1340592,1340686..1342124))	Theileria parva strain Muguga	3503354
TpMuguga_01g00642	CDS	Txnl4a	NC_007344.1	1342423	1343160	D	mitosis protein Dim1	join(1342423..1342464,1342497..1342532,1342618..1342719,1342787..1342863,1342925..1343043,1343108..1343160)	Theileria parva strain Muguga	3503355
TpMuguga_01g00643	CDS	TpMuguga_01g00643	NC_007344.1	1343368	1344090	D	uncharacterized protein	1343368..1344090	Theileria parva strain Muguga	3503356
TpMuguga_01g02450	CDS	TpMuguga_01g02450	NC_007344.1	1344238	1346566	R	uncharacterized protein	complement(join(1344238..1344682,1344801..1344883,1344914..1345016,1345052..1345227,1345321..1345462,1345498..1345555,1345591..1345741,1345814..1345876,1345911..1345985,1346016..1346186,1346227..1346346,1346390..1346566))	Theileria parva strain Muguga	3503358
TpMuguga_01g00646	CDS	abcC6	NC_007344.1	1347153	1347977	D	ABC transporter family protein	1347153..1347977	Theileria parva strain Muguga	3503359
TpMuguga_01g00647	CDS	TpMuguga_01g00647	NC_007344.1	1348213	1353903	R	uncharacterized protein	complement(1348213..1353903)	Theileria parva strain Muguga	3503360
TpMuguga_01g00648	CDS	TpMuguga_01g00648	NC_007344.1	1354578	1356679	R	uncharacterized protein	complement(join(1354578..1354745,1354866..1356307,1356397..1356679))	Theileria parva strain Muguga	3503216
TpMuguga_01g00649	CDS	TpMuguga_01g00649	NC_007344.1	1357837	1359354	D	LEM3 (ligand-effect modulator 3) family / CDC50 family protein	join(1357837..1358089,1358174..1358542,1358615..1358822,1358910..1359354)	Theileria parva strain Muguga	3503217
TpMuguga_01g00650	CDS	AMA1	NC_007344.1	1360027	1362384	D	Apical membrane antigen 1 family protein	1360027..1362384	Theileria parva strain Muguga	3503218
TpMuguga_01g02350	CDS	TpMuguga_01g02350	NC_007344.1	1362493	1363493	D	uncharacterized protein	join(1362493..1362629,1362702..1362941,1362975..1363103,1363142..1363265,1363314..1363493)	Theileria parva strain Muguga	3503219
TpMuguga_01g02650	CDS	TpMuguga_01g02650	NC_007344.1	1363541	1364077	D	uncharacterized protein	join(1363541..1363863,1363969..1364077)	Theileria parva strain Muguga	86047649
TpMuguga_01g00652	CDS	POLR3F	NC_007344.1	1364154	1365385	D	RNA polymerase Rpc34 subunit family protein	join(1364154..1364364,1364458..1364600,1364685..1364963,1365049..1365147,1365230..1365385)	Theileria parva strain Muguga	3503220
TpMuguga_01g02760	CDS	TpMuguga_01g02760	NC_007344.1	1365426	1366031	D	putative integral membrane protein	1365426..1366031	Theileria parva strain Muguga	86047655
TpMuguga_01g00653	CDS	rps25	NC_007344.1	1366310	1366687	D	40S ribosomal protein S25	join(1366310..1366384,1366445..1366687)	Theileria parva strain Muguga	3503221
TpMuguga_01g00654	CDS	TpMuguga_01g00654	NC_007344.1	1366830	1368011	R	Ribosomal protein L1 family protein	complement(join(1366830..1367278,1367372..1368011))	Theileria parva strain Muguga	3503065
TpMuguga_01g00655	CDS	syvn1	NC_007344.1	1368159	1370584	D	Ring finger domain protein	join(1368159..1368296,1368368..1368460,1368544..1368714,1368745..1368894,1368972..1369050,1369115..1369188,1369221..1369292,1369353..1369426,1369480..1369652,1369752..1370584)	Theileria parva strain Muguga	3503066
TpMuguga_01g00656	CDS	TpMuguga_01g00656	NC_007344.1	1370769	1373606	D	uncharacterized protein	1370769..1373606	Theileria parva strain Muguga	3503067
TpMuguga_01g00657	CDS	Bdh1	NC_007344.1	1373681	1375011	D	short chain dehydrogenase family protein	join(1373681..1374181,1374274..1374664,1374770..1375011)	Theileria parva strain Muguga	3503068
TpMuguga_01g02535	CDS	TpMuguga_01g02535	NC_007344.1	1375122	1375596	R	putative integral membrane protein	complement(join(1375122..1375211,1375244..1375311,1375458..1375596))	Theileria parva strain Muguga	86047640
TpMuguga_01g00658	CDS	TpMuguga_01g00658	NC_007344.1	1376142	1379686	D	Dynamin family protein	join(1376142..1376478,1376568..1379686)	Theileria parva strain Muguga	3503069
TpMuguga_01g00659	CDS	TpMuguga_01g00659	NC_007344.1	1379878	1380924	R	Glycerophosphoryl diester phosphodiesterase family protein	complement(1379878..1380924)	Theileria parva strain Muguga	3503070
TpMuguga_01g00660	CDS	AP2M1	NC_007344.1	1381772	1383315	D	Adaptor complexes medium subunit family protein	join(1381772..1382618,1382681..1383315)	Theileria parva strain Muguga	3503071
TpMuguga_01g00661	CDS	Tgs1	NC_007344.1	1383752	1385898	D	Trimethylguanosine synthase	join(1383752..1383812,1383881..1384633,1384668..1385221,1385310..1385628,1385786..1385898)	Theileria parva strain Muguga	3502983
TpMuguga_01g00662	CDS	TpMuguga_01g00662	NC_007344.1	1385953	1389711	R	putative integral membrane protein	complement(1385953..1389711)	Theileria parva strain Muguga	3502984
TpMuguga_01g00663	CDS	TpMuguga_01g00663	NC_007344.1	1390069	1391516	D	Ribosomal protein S18 family protein	join(1390069..1390561,1390595..1390676,1390715..1390923,1390994..1391181,1391243..1391349,1391459..1391516)	Theileria parva strain Muguga	3502985
TpMuguga_01g00664	CDS	PDE8A	NC_007344.1	1391959	1393745	D	3'5'-cyclic nucleotide phosphodiesterase family protein	join(1391959..1392489,1392594..1392708,1392738..1392970,1393103..1393369,1393539..1393745)	Theileria parva strain Muguga	3502986
TpMuguga_01g00665	CDS	dnaJ	NC_007344.1	1394453	1395466	R	chaperone protein DnaJ	complement(join(1394453..1394577,1394610..1394789,1394879..1394958,1395025..1395115,1395146..1395247,1395355..1395466))	Theileria parva strain Muguga	3502987
TpMuguga_01g00666	CDS	MCM8	NC_007344.1	1395995	1399594	D	MCM2/3/5 family protein	join(1395995..1396067,1396098..1396174,1396211..1397439,1397497..1397560,1397608..1397902,1397944..1398099,1398202..1398359,1398389..1398516,1398562..1398639,1398669..1398741,1398799..1399023,1399054..1399269,1399301..1399376,1399539..1399594)	Theileria parva strain Muguga	3502988
TpMuguga_01g00667	CDS	TpMuguga_01g00667	NC_007344.1	1400261	1401678	D	putative lysophospholipase family protein	join(1400261..1401217,1401344..1401496,1401526..1401678)	Theileria parva strain Muguga	3502898
TpMuguga_01g00668	CDS	TpMuguga_01g00668	NC_007344.1	1401787	1402252	D	Rrp15p family protein	join(1401787..1401844,1401878..1401912,1401942..1402007,1402097..1402184,1402215..1402252)	Theileria parva strain Muguga	86047602
TpMuguga_01g00669	CDS	TpMuguga_01g00669	NC_007344.1	1402651	1404047	D	putative integral membrane protein	join(1402651..1402950,1403064..1404047)	Theileria parva strain Muguga	3502900
TpMuguga_01g00670	CDS	TpMuguga_01g00670	NC_007344.1	1404167	1405582	R	uncharacterized protein	complement(1404167..1405582)	Theileria parva strain Muguga	3502901
TpMuguga_01g00671	CDS	TpMuguga_01g00671	NC_007344.1	1406069	1407632	R	uncharacterized protein	complement(join(1406069..1406527,1406561..1406620,1406650..1406688,1406718..1406802,1406832..1406917,1406966..1407099,1407128..1407632))	Theileria parva strain Muguga	3502902
TpMuguga_01g00672	CDS	rtf2	NC_007344.1	1407827	1408614	R	Rtf2 RING-finger family protein	complement(join(1407827..1408135,1408191..1408337,1408432..1408614))	Theileria parva strain Muguga	3502850
TpMuguga_01g00673	CDS	nop10	NC_007344.1	1408799	1409036	D	H/ACA ribonucleoprotein complex subunit 3	join(1408799..1408852,1408914..1409036)	Theileria parva strain Muguga	3502851
TpMuguga_01g02495	CDS	TpMuguga_01g02495	NC_007344.1	1409840	1411726	D	putative integral membrane protein	join(1409840..1410607,1410637..1410697,1411204..1411314,1411387..1411439,1411622..1411726)	Theileria parva strain Muguga	86047637
TpMuguga_01g02050	CDS	TpMuguga_01g02050	NC_007344.1	1411798	1413668	D	uncharacterized protein	join(1411798..1411888,1411920..1412053,1412154..1412342,1412596..1412989,1413082..1413668)	Theileria parva strain Muguga	3502852
TpMuguga_01g00675	CDS	RPL14	NC_007344.1	1413854	1414549	R	Ribosomal protein L14 family protein	complement(join(1413854..1414109,1414382..1414446,1414478..1414549))	Theileria parva strain Muguga	3502853
TpMuguga_01g00676	CDS	TpMuguga_01g00676	NC_007344.1	1415176	1416490	D	SF-assemblin/beta giardin family protein	join(1415176..1415322,1415527..1415688,1415720..1415800,1415910..1416044,1416123..1416193,1416322..1416490)	Theileria parva strain Muguga	3502854
TpMuguga_01g00677	CDS	SUCLA2	NC_007344.1	1416732	1418093	R	ATP-grasp domain protein	complement(1416732..1418093)	Theileria parva strain Muguga	3502855
TpMuguga_01g00678	CDS	erkB	NC_007344.1	1418835	1421278	R	Protein kinase domain protein	complement(join(1418835..1420279,1420738..1421278))	Theileria parva strain Muguga	3502838
TpMuguga_01g00679	CDS	TpMuguga_01g00679	NC_007344.1	1422742	1425189	D	putative integral membrane protein	join(1422742..1422817,1423116..1423475,1423994..1425189)	Theileria parva strain Muguga	3502839
TpMuguga_01g00680	CDS	TpMuguga_01g00680	NC_007344.1	1425601	1426287	D	uncharacterized protein	1425601..1426287	Theileria parva strain Muguga	3502840
TpMuguga_01g00681	CDS	lsg1	NC_007344.1	1426371	1430211	R	50S ribosome-binding GTPase family protein	complement(join(1426371..1426442,1426595..1427159,1427996..1428071,1428126..1428480,1428527..1428604,1429150..1430211))	Theileria parva strain Muguga	3502841
TpMuguga_01g02130	CDS	TpMuguga_01g02130	NC_007344.1	1430468	1432079	D	Ribosomal protein L17 family protein	join(1430468..1430568,1430727..1430833,1431003..1431186,1431544..1431646,1431792..1431863,1431897..1432079)	Theileria parva strain Muguga	3502842
TpMuguga_01g02165	CDS	COX2	NC_007344.1	1432245	1432730	D	Cytochrome C oxidase subunit II periplasmic domain protein	1432245..1432730	Theileria parva strain Muguga	3502843
TpMuguga_01g00684	CDS	TpMuguga_01g00684	NC_007344.1	1433330	1435120	R	uncharacterized protein	complement(1433330..1435120)	Theileria parva strain Muguga	3502755
TpMuguga_01g00685	CDS	TpMuguga_01g00685	NC_007344.1	1435984	1438122	D	uncharacterized protein	1435984..1438122	Theileria parva strain Muguga	3502756
TpMuguga_01g02150	CDS	TpMuguga_01g02150	NC_007344.1	1438728	1439649	R	Plasmodium falciparum CPW-WPC domain protein; uncharacterized protein	complement(join(1438728..1438775,1438827..1438912,1438942..1438954,1438985..1439020,1439062..1439147,1439182..1439276,1439375..1439510,1439543..1439559,1439591..1439649))	Theileria parva strain Muguga	86047614
TpMuguga_01g02160	CDS	dph2	NC_007344.1	1439794	1441415	D	diphthamide biosynthesis enzyme Dph1/Dph2 domain protein	join(1439794..1440013,1440272..1440381,1440411..1441415)	Theileria parva strain Muguga	86047615
TpMuguga_01g02420	CDS	mrpl10	NC_007344.1	1441458	1443595	D	54S ribosomal protein L10	join(1441458..1441545,1441575..1441774,1442034..1442203,1442404..1442554,1442792..1442959,1443070..1443202,1443519..1443595)	Theileria parva strain Muguga	3502757
TpMuguga_01g02845	CDS	TpMuguga_01g02845	NC_007344.1	1443647	1444078	R	putative integral membrane protein	complement(1443647..1444078)	Theileria parva strain Muguga	86047663
TpMuguga_01g00687	CDS	TpMuguga_01g00687	NC_007344.1	1444309	1448982	D	Adaptin N terminal region family protein	join(1444309..1444453,1444541..1444703,1445022..1445148,1445203..1445322,1445413..1445503,1445816..1446007,1446212..1447057,1447221..1447576,1447973..1448573,1448754..1448839,1448923..1448982)	Theileria parva strain Muguga	3502758
TpMuguga_01g00688	CDS	TpMuguga_01g00688	NC_007344.1	1449007	1451534	D	uncharacterized protein	join(1449007..1449105,1449199..1450638,1450728..1450982,1451013..1451231,1451263..1451388,1451448..1451534)	Theileria parva strain Muguga	3502759
TpMuguga_01g00689	CDS	TpMuguga_01g00689	NC_007344.1	1452267	1453285	R	uncharacterized protein	complement(join(1452267..1452325,1452356..1452432,1452463..1452521,1452632..1452772,1453133..1453285))	Theileria parva strain Muguga	3502760
TpMuguga_01g00690	CDS	TpMuguga_01g00690	NC_007344.1	1453750	1454571	R	uncharacterized protein	complement(1453750..1454571)	Theileria parva strain Muguga	3502784
TpMuguga_01g00691	CDS	TpMuguga_01g00691	NC_007344.1	1454753	1455706	D	VPS28 family protein	join(1454753..1454935,1455013..1455087,1455353..1455433,1455488..1455706)	Theileria parva strain Muguga	3502785
TpMuguga_01g00692	CDS	PGA	NC_007344.1	1455979	1458706	D	Eukaryotic aspartyl protease family protein	join(1455979..1456089,1456365..1456970,1457346..1457477,1457575..1457815,1458152..1458372,1458635..1458706)	Theileria parva strain Muguga	3502786
TpMuguga_01g00693	CDS	TpMuguga_01g00693	NC_007344.1	1458954	1459327	R	uncharacterized protein	complement(join(1458954..1459050,1459320..1459327))	Theileria parva strain Muguga	86047603
TpMuguga_01g00694	CDS	ppip5k2	NC_007344.1	1459682	1465644	R	Histidine phosphatase superfamily (branch 2) family protein	complement(join(1459682..1463034,1463974..1464823,1465132..1465239,1465346..1465429,1465519..1465644))	Theileria parva strain Muguga	3502788
TpMuguga_01g00695	CDS	rrd2	NC_007344.1	1465756	1468041	R	Phosphotyrosyl phosphate activator (PTPA) family protein	complement(join(1465756..1465905,1466200..1466274,1466485..1466632,1466717..1466816,1467496..1467616,1467685..1468041))	Theileria parva strain Muguga	3502789
TpMuguga_01g00696	CDS	TpMuguga_01g00696	NC_007344.1	1468518	1469923	R	putative integral membrane protein	complement(join(1468518..1468565,1468937..1469158,1469531..1469923))	Theileria parva strain Muguga	3502593
TpMuguga_01g00697	CDS	TpMuguga_01g00697	NC_007344.1	1470321	1471677	R	Ring finger domain protein	complement(join(1470321..1470765,1471083..1471193,1471376..1471677))	Theileria parva strain Muguga	3502594
TpMuguga_01g00698	CDS	DHX37	NC_007344.1	1472577	1477859	R	Helicase conserved domain protein	complement(join(1472577..1474060,1474090..1474448,1474641..1474732,1474786..1475638,1475689..1475783,1475814..1475954,1476118..1476569,1477017..1477272,1477494..1477667,1477707..1477859))	Theileria parva strain Muguga	3502595
TpMuguga_01g00699	CDS	TpMuguga_01g00699	NC_007344.1	1478186	1478827	D	Casein kinase substrate phosphoprotein PP28 family protein	join(1478186..1478353,1478385..1478420,1478450..1478578,1478671..1478720,1478752..1478827)	Theileria parva strain Muguga	3502596
TpMuguga_01g00700	CDS	TpMuguga_01g00700	NC_007344.1	1479399	1481528	D	Rhoptry-associated protein 1 (RAP-1) family protein	1479399..1481528	Theileria parva strain Muguga	3502597
TpMuguga_01g00701	CDS	TpMuguga_01g00701	NC_007344.1	1482290	1484110	D	Rhoptry-associated protein 1 (RAP-1) family protein	1482290..1484110	Theileria parva strain Muguga	3502446
TpMuguga_01g00702	CDS	TpMuguga_01g00702	NC_007344.1	1484880	1485521	D	Rhoptry-associated protein 1 (RAP-1)	1484880..1485521	Theileria parva strain Muguga	3502447
TpMuguga_01g00703	CDS	TpMuguga_01g00703	NC_007344.1	1485627	1486649	D	uncharacterized protein	1485627..1486649	Theileria parva strain Muguga	3502448
TpMuguga_01g00704	CDS	TpMuguga_01g00704	NC_007344.1	1487155	1489716	D	Rhoptry-associated protein 1 (RAP-1) family protein	1487155..1489716	Theileria parva strain Muguga	3502449
TpMuguga_01g00705	CDS	dohh	NC_007344.1	1490071	1491261	D	HEAT repeats family protein	join(1490071..1490279,1490319..1490424,1490456..1490503,1490577..1490806,1490836..1490887,1490917..1491261)	Theileria parva strain Muguga	3502450
TpMuguga_01g00706	CDS	DNAJ1	NC_007344.1	1491798	1493731	D	chaperone protein DnaJ	join(1491798..1491866,1491896..1492044,1492355..1492451,1492543..1492635,1492730..1493239,1493399..1493731)	Theileria parva strain Muguga	3502451
TpMuguga_01g00707	CDS	eif2a	NC_007344.1	1493855	1496364	R	Eukaryotic translation initiation factor eIF2A family protein	complement(join(1493855..1493965,1494031..1494336,1494432..1494608,1494709..1494825,1494951..1495100,1495133..1495228,1495260..1495427,1495501..1495601,1495665..1495772,1495936..1496023,1496067..1496137,1496175..1496364))	Theileria parva strain Muguga	3502452
TpMuguga_01g00708	CDS	TpMuguga_01g00708	NC_007344.1	1496507	1498657	R	uncharacterized protein	complement(join(1496507..1496800,1496882..1498657))	Theileria parva strain Muguga	3502874
TpMuguga_01g00709	CDS	Psmd2	NC_007344.1	1499529	1503105	D	Proteasome/cyclosome repeat family protein	join(1499529..1501062,1501268..1503105)	Theileria parva strain Muguga	3502875
TpMuguga_01g00710	CDS	TpMuguga_01g00710	NC_007344.1	1503279	1505799	R	uncharacterized protein	complement(join(1503279..1504100,1504131..1504217,1504293..1504486,1504558..1505500,1505531..1505607,1505640..1505799))	Theileria parva strain Muguga	3502876
TpMuguga_01g00711	CDS	RPT1A	NC_007344.1	1506056	1507795	D	26S proteasome regulatory subunit 7-like protein	join(1506056..1506139,1506242..1506323,1506401..1506579,1506661..1506713,1506744..1506853,1506884..1507094,1507159..1507462,1507541..1507795)	Theileria parva strain Muguga	3502877
TpMuguga_01g00712	CDS	Ap1m1	NC_007344.1	1508233	1509537	D	AP-1 complex subunit mu-1	1508233..1509537	Theileria parva strain Muguga	3502878
TpMuguga_01g02690	CDS	TpMuguga_01g02690	NC_007344.1	1509790	1512066	D	uncharacterized protein	join(1509790..1509906,1509938..1510111,1510151..1510249,1510291..1510346,1510376..1510477,1510524..1510719,1510752..1510826,1510861..1510975,1511005..1511102,1511138..1511215,1511248..1511416,1511447..1511595,1511630..1511717,1511749..1511933,1511965..1512066)	Theileria parva strain Muguga	3502879
TpMuguga_01g00715	CDS	TpMuguga_01g00715	NC_007344.1	1512229	1513741	D	Triose-phosphate Transporter family protein	join(1512229..1512367,1512435..1513741)	Theileria parva strain Muguga	3502881
TpMuguga_01g00716	CDS	TpMuguga_01g00716	NC_007344.1	1513866	1514522	R	Ribosomal protein S16 family protein	complement(join(1513866..1514407,1514441..1514522))	Theileria parva strain Muguga	3502882
TpMuguga_01g00717	CDS	TpMuguga_01g00717	NC_007344.1	1514618	1516183	R	uncharacterized protein	complement(1514618..1516183)	Theileria parva strain Muguga	3502883
TpMuguga_01g00718	CDS	TpMuguga_01g00718	NC_007344.1	1516307	1517189	D	uncharacterized protein	join(1516307..1516372,1516421..1516657,1516766..1516900,1516940..1517095,1517166..1517189)	Theileria parva strain Muguga	3502884
TpMuguga_01g00719	CDS	TpMuguga_01g00719	NC_007344.1	1517173	1518427	R	uncharacterized protein	complement(join(1517173..1517296,1517328..1518427))	Theileria parva strain Muguga	3502977
TpMuguga_01g00720	CDS	TpMuguga_01g00720	NC_007344.1	1518916	1523001	D	HAD ATPase P-type family IC family protein	1518916..1523001	Theileria parva strain Muguga	3502978
TpMuguga_01g00721	CDS	Ubb	NC_007344.1	1523323	1523790	R	Ubiquitin family protein	complement(1523323..1523790)	Theileria parva strain Muguga	3502979
TpMuguga_01g00722	CDS	MCM5	NC_007344.1	1524533	1527564	R	MCM2/3/5 family protein	complement(join(1524533..1524605,1524656..1525131,1525247..1525340,1525370..1525433,1525510..1525767,1525919..1526124,1526165..1526270,1526300..1526465,1526541..1526618,1526710..1526782,1526814..1527139,1527181..1527564))	Theileria parva strain Muguga	3502980
TpMuguga_01g02520	CDS	LDL1	NC_007344.1	1527714	1532287	R	Flavin containing amine oxidoreductase family protein	complement(join(1527714..1527848,1527885..1529020,1529050..1532235,1532266..1532287))	Theileria parva strain Muguga	86047638
TpMuguga_01g02725	CDS	TpMuguga_01g02725	NC_007344.1	1532339	1536001	R	uncharacterized protein	complement(join(1532339..1532487,1532565..1532785,1532823..1536001))	Theileria parva strain Muguga	3502981
TpMuguga_01g02710	CDS	TpMuguga_01g02710	NC_007344.1	1536076	1536637	D	Sybindin-like family protein	join(1536076..1536382,1536456..1536637)	Theileria parva strain Muguga	86047652
TpMuguga_01g00724	CDS	TpMuguga_01g00724	NC_007344.1	1536675	1539524	R	MutS domain I family protein	complement(join(1536675..1537496,1537527..1537715,1537744..1537980,1538045..1538626,1538658..1539524))	Theileria parva strain Muguga	3502982
TpMuguga_01g00725	CDS	RNR2	NC_007344.1	1539673	1541121	R	Ribonucleoside-diphosphate reductase small chain C	complement(join(1539673..1539774,1539808..1539923,1539954..1540230,1540368..1540629,1540660..1540829,1541047..1541121))	Theileria parva strain Muguga	3503483
TpMuguga_01g00726	CDS	TpMuguga_01g00726	NC_007344.1	1541341	1542687	R	Tp16; translation elongation factor EF-1 subunit alpha	complement(1541341..1542687)	Theileria parva strain Muguga	3503484
TpMuguga_01g00727	CDS	gltX	NC_007344.1	1543538	1545730	D	glutamate--tRNA ligase	join(1543538..1544007,1544067..1544150,1544182..1544263,1544316..1544422,1544479..1544622,1544694..1544828,1544959..1545287,1545373..1545439,1545472..1545604,1545638..1545730)	Theileria parva strain Muguga	3503485
TpMuguga_01g00728	CDS	CRK2	NC_007344.1	1545940	1547168	D	Cell division control protein 2-like protein	join(1545940..1546078,1546108..1546251,1546362..1546521,1546596..1546729,1546817..1546986,1547019..1547168)	Theileria parva strain Muguga	3503486
TpMuguga_01g02670	CDS	TpMuguga_01g02670	NC_007344.1	1547268	1547703	R	uncharacterized protein	complement(join(1547268..1547310,1547340..1547386,1547417..1547516,1547546..1547703))	Theileria parva strain Muguga	86047650
TpMuguga_01g02205	CDS	Dnajb9	NC_007344.1	1547883	1548979	R	DnaJ domain protein	complement(join(1547883..1547907,1547937..1547976,1548008..1548060,1548157..1548371,1548456..1548622,1548656..1548832,1548955..1548979))	Theileria parva strain Muguga	3503487
TpMuguga_01g00730	CDS	Herc2	NC_007344.1	1549387	1550991	D	Regulator of chromosome condensation (RCC1) repeat family protein	join(1549387..1549467,1549545..1549584,1549615..1549668,1549699..1550613,1550727..1550860,1550893..1550991)	Theileria parva strain Muguga	3503488
TpMuguga_01g00731	CDS	TpMuguga_01g00731	NC_007344.1	1551261	1555820	R	Protein kinase domain protein	complement(1551261..1555820)	Theileria parva strain Muguga	3503531
TpMuguga_01g00732	CDS	UBC27	NC_007344.1	1557039	1557889	D	Ubiquitin-conjugating enzyme E2 K	join(1557039..1557077,1557115..1557210,1557243..1557320,1557381..1557531,1557566..1557635,1557665..1557716,1557748..1557792,1557827..1557889)	Theileria parva strain Muguga	3503532
TpMuguga_01g00733	CDS	TIM23-1	NC_007344.1	1558022	1558639	D	Tim17/Tim22/Tim23/Pmp24 family protein	join(1558022..1558145,1558179..1558238,1558296..1558639)	Theileria parva strain Muguga	3503533
TpMuguga_01g00734	CDS	TpMuguga_01g00734	NC_007344.1	1558660	1559890	R	UEV domain protein	complement(join(1558660..1558731,1558761..1558863,1558892..1559067,1559105..1559461,1559493..1559728,1559779..1559890))	Theileria parva strain Muguga	3503534
TpMuguga_01g00735	CDS	GRX5	NC_007344.1	1560171	1560895	D	Glutaredoxin family protein	join(1560171..1560458,1560491..1560523,1560566..1560667,1560704..1560895)	Theileria parva strain Muguga	3503535
TpMuguga_01g00736	CDS	TpMuguga_01g00736	NC_007344.1	1561500	1563370	D	uncharacterized protein	join(1561500..1561631,1561663..1561825,1561859..1562886,1562957..1563370)	Theileria parva strain Muguga	3503464
TpMuguga_01g02305	CDS	TpMuguga_01g02305	NC_007344.1	1563387	1567121	R	uncharacterized protein	complement(join(1563387..1563440,1563477..1563605,1563639..1563856,1563892..1564302,1564335..1564455,1564490..1564561,1564597..1564806,1564869..1567121))	Theileria parva strain Muguga	3503465
TpMuguga_01g02175	CDS	TpMuguga_01g02175	NC_007344.1	1567224	1569277	R	Sas10 domain protein	complement(join(1567224..1567432,1567464..1567865,1567907..1568021,1568051..1568169,1568201..1568411,1568443..1568679,1568710..1568972,1569003..1569071,1569133..1569277))	Theileria parva strain Muguga	3503468
TpMuguga_01g00741	CDS	TpMuguga_01g00741	NC_007344.1	1570030	1572993	D	Filamin/ABP280 repeat family protein	1570030..1572993	Theileria parva strain Muguga	3503469
TpMuguga_01g00742	CDS	TpMuguga_01g00742	NC_007344.1	1573042	1573573	D	uncharacterized protein	join(1573042..1573188,1573224..1573317,1573350..1573446,1573477..1573573)	Theileria parva strain Muguga	3503470
TpMuguga_01g00743	CDS	TpMuguga_01g00743	NC_007344.1	1573654	1574779	R	uncharacterized protein	complement(join(1573654..1573801,1573833..1573961,1574000..1574045,1574075..1574107,1574139..1574231,1574263..1574592,1574695..1574779))	Theileria parva strain Muguga	3503269
TpMuguga_01g00744	CDS	TpMuguga_01g00744	NC_007344.1	1574950	1575854	D	uncharacterized protein	join(1574950..1575239,1575273..1575330,1575362..1575411,1575440..1575540,1575604..1575648,1575680..1575771,1575822..1575854)	Theileria parva strain Muguga	3503270
TpMuguga_01g00745	CDS	ACBP2	NC_007344.1	1575946	1577009	R	Ankyrin repeat family protein	complement(join(1575946..1575997,1576030..1576147,1576185..1576222,1576252..1576318,1576349..1576422,1576455..1576501,1576531..1576642,1576702..1576777,1576838..1577009))	Theileria parva strain Muguga	3503271
TpMuguga_01g00746	CDS	TpMuguga_01g00746	NC_007344.1	1577135	1578848	R	SET domain protein	complement(join(1577135..1577215,1577255..1577342,1577383..1577510,1577543..1577964,1577997..1578152,1578184..1578369,1578405..1578632,1578665..1578848))	Theileria parva strain Muguga	3503272
TpMuguga_01g00747	CDS	NOP56	NC_007344.1	1579566	1581248	D	Nucleolar protein 56 domain protein	1579566..1581248	Theileria parva strain Muguga	3503273
TpMuguga_01g00748	CDS	TpMuguga_01g00748	NC_007344.1	1581373	1581949	D	uncharacterized protein	join(1581373..1581618,1581650..1581949)	Theileria parva strain Muguga	3503274
TpMuguga_01g02600	CDS	TpMuguga_01g02600	NC_007344.1	1582049	1583742	R	MOZ/SAS family protein	complement(join(1582049..1582270,1582371..1582556,1582587..1582716,1582751..1582855,1582926..1583169,1583212..1583405,1583436..1583524,1583584..1583742))	Theileria parva strain Muguga	3503107
TpMuguga_01g02500	CDS	TpMuguga_01g02500	NC_007344.1	1583848	1587596	R	Peptidase M16 inactive domain protein	complement(join(1583848..1583961,1583999..1584112,1584139..1584232,1584344..1584450,1584525..1584649,1584737..1585218,1585285..1587596))	Theileria parva strain Muguga	3503109
TpMuguga_01g00753	CDS	Trap1	NC_007344.1	1587915	1590494	D	Hsp90 family protein	join(1587915..1588145,1588211..1588444,1588476..1588738,1588780..1589169,1589205..1589388,1589442..1589566,1589646..1589751,1589790..1589891,1589924..1590180,1590212..1590494)	Theileria parva strain Muguga	3503111
TpMuguga_01g00754	CDS	AAP19-1	NC_007344.1	1590581	1591178	R	AP-1 complex subunit sigma-1A	complement(join(1590581..1590712,1590770..1590914,1590997..1591178))	Theileria parva strain Muguga	3502954
TpMuguga_01g00755	CDS	TpMuguga_01g00755	NC_007344.1	1591319	1593396	R	uncharacterized protein	complement(join(1591319..1592190,1592223..1592351,1592418..1593315,1593349..1593396))	Theileria parva strain Muguga	3502955
TpMuguga_01g00756	CDS	MLH1	NC_007344.1	1594141	1597146	D	DNA mismatch repair protein domain protein	join(1594141..1595195,1595234..1595408,1595440..1595529,1595597..1596228,1596312..1596460,1596506..1596693,1596728..1596941,1596986..1597075,1597106..1597146)	Theileria parva strain Muguga	3502956
TpMuguga_01g00757	CDS	GSP1	NC_007344.1	1597336	1598109	R	GTP-binding nuclear protein GSP1/CNR1	complement(join(1597336..1597859,1597998..1598109))	Theileria parva strain Muguga	3502957
TpMuguga_01g00758	CDS	TpMuguga_01g00758	NC_007344.1	1598795	1601449	R	uncharacterized protein	complement(join(1598795..1599076,1599165..1599458,1599496..1599603,1599663..1599861,1599923..1600014,1600070..1600173,1600237..1600446,1600504..1600762,1600792..1600920,1600953..1601155,1601198..1601285,1601327..1601449))	Theileria parva strain Muguga	3502958
TpMuguga_01g00759	CDS	TpMuguga_01g00759	NC_007344.1	1602038	1605895	D	putative integral membrane protein	join(1602038..1602474,1602556..1602770,1602834..1602934,1602971..1603099,1603141..1603269,1603299..1603613,1603678..1603773,1603807..1603950,1603982..1604301,1604340..1604802,1604833..1605022,1605108..1605236,1605268..1605367,1605829..1605895)	Theileria parva strain Muguga	3502959
TpMuguga_01g00760	CDS	tyrS	NC_007344.1	1605937	1607928	R	tyrosine--tRNA ligase	complement(join(1605937..1606188,1606240..1606443,1606475..1606550,1606613..1606784,1606817..1607497,1607530..1607820,1607853..1607928))	Theileria parva strain Muguga	3502570
TpMuguga_01g00761	CDS	TpMuguga_01g00761	NC_007344.1	1608876	1610131	D	uncharacterized protein	join(1608876..1609303,1609378..1610131)	Theileria parva strain Muguga	3502571
TpMuguga_01g00762	CDS	TpMuguga_01g00762	NC_007344.1	1610278	1612899	R	uncharacterized protein	complement(join(1610278..1611947,1611984..1612410,1612471..1612532,1612569..1612899))	Theileria parva strain Muguga	3502572
TpMuguga_01g00763	CDS	AP4S1	NC_007344.1	1613162	1613653	D	Clathrin adaptor complex small chain	join(1613162..1613343,1613398..1613653)	Theileria parva strain Muguga	3502573
TpMuguga_01g00764	CDS	TpMuguga_01g00764	NC_007344.1	1613715	1615049	R	uncharacterized protein	complement(1613715..1615049)	Theileria parva strain Muguga	3502574
TpMuguga_01g00765	CDS	eif4a3	NC_007344.1	1615188	1616576	R	DEAD/DEAH box helicase	complement(join(1615188..1615277,1615333..1615443,1615510..1616136,1616220..1616576))	Theileria parva strain Muguga	3502552
TpMuguga_01g02080	CDS	TpMuguga_01g02080	NC_007344.1	1616873	1618775	D	uncharacterized protein	join(1616873..1617285,1617339..1617603,1617634..1617805,1617860..1618358,1618469..1618542,1618582..1618775)	Theileria parva strain Muguga	3502554
TpMuguga_01g00768	CDS	TpMuguga_01g00768	NC_007344.1	1618964	1619291	D	uncharacterized protein	join(1618964..1619183,1619218..1619291)	Theileria parva strain Muguga	3502555
TpMuguga_01g00769	CDS	TpMuguga_01g00769	NC_007344.1	1619858	1620607	D	uncharacterized protein	join(1619858..1619871,1620019..1620161,1620288..1620607)	Theileria parva strain Muguga	3502556
TpMuguga_01g00770	CDS	TpMuguga_01g00770	NC_007344.1	1620787	1623072	R	uncharacterized protein	complement(1620787..1623072)	Theileria parva strain Muguga	3502557
TpMuguga_01g00771	CDS	TpMuguga_01g00771	NC_007344.1	1623625	1624053	D	uncharacterized protein	1623625..1624053	Theileria parva strain Muguga	3502558
TpMuguga_01g00772	CDS	MSI1	NC_007344.1	1624327	1625748	D	WD domain G-beta repeat protein	1624327..1625748	Theileria parva strain Muguga	3503514
TpMuguga_01g02480	CDS	XI-2	NC_007344.1	1626134	1632911	R	Myosin head (motor domain) family protein	complement(join(1626134..1626469,1626558..1626716,1626837..1627158,1627266..1627602,1627711..1627839,1627940..1628206,1628332..1628524,1628665..1628723,1628806..1629102,1629237..1629730,1629800..1629911,1629993..1630129,1630211..1630386,1630464..1630663,1630723..1630810,1630879..1632222,1632304..1632482,1632568..1632691,1632849..1632911))	Theileria parva strain Muguga	3503516
TpMuguga_01g00775	CDS	plcd3a	NC_007344.1	1633873	1636877	D	Phosphatidylinositol-specific phospholipase C X domain protein	join(1633873..1634506,1634587..1636877)	Theileria parva strain Muguga	3503518
TpMuguga_01g02530	CDS	TpMuguga_01g02530	NC_007344.1	1637070	1637669	R	putative integral membrane protein	complement(1637070..1637669)	Theileria parva strain Muguga	86047639
TpMuguga_01g02795	CDS	TpMuguga_01g02795	NC_007344.1	1637861	1640835	R	uncharacterized protein	complement(join(1637861..1637921,1637951..1638369,1638431..1639004,1639081..1639279,1639368..1639506,1639575..1640641,1640676..1640835))	Theileria parva strain Muguga	3503519
TpMuguga_01g00777	CDS	TpMuguga_01g00777	NC_007344.1	1640902	1641521	R	Utp14 family protein	complement(join(1640902..1641018,1641110..1641217,1641249..1641521))	Theileria parva strain Muguga	3502604
TpMuguga_01g00778	CDS	TpMuguga_01g00778	NC_007344.1	1641583	1643490	R	Utp14 family protein	complement(join(1641583..1642220,1642284..1643490))	Theileria parva strain Muguga	3502605
TpMuguga_01g00779	CDS	ADA2	NC_007344.1	1644120	1646392	D	Myb-like DNA-binding domain protein	join(1644120..1644597,1644684..1644751,1644807..1644914,1644948..1645038,1645109..1645331,1645411..1645630,1645707..1645823,1645904..1646392)	Theileria parva strain Muguga	3502606
TpMuguga_01g00780	CDS	TpMuguga_01g00780	NC_007344.1	1646532	1648202	D	uncharacterized protein	1646532..1648202	Theileria parva strain Muguga	3502607
TpMuguga_01g00781	CDS	CDKC-1	NC_007344.1	1648290	1649773	R	Protein kinase domain protein	complement(join(1648290..1648370,1648403..1648479,1648567..1649318,1649436..1649773))	Theileria parva strain Muguga	3502608
TpMuguga_01g02235	CDS	TpMuguga_01g02235	NC_007344.1	1649895	1650248	D	putative integral membrane protein	join(1649895..1650008,1650072..1650248)	Theileria parva strain Muguga	86047621
TpMuguga_01g00782	CDS	ranbp9	NC_007344.1	1650354	1652139	R	SPRY domain protein	complement(join(1650354..1650441,1650472..1650532,1650566..1650677,1650771..1651021,1651053..1651166,1651197..1651335,1651410..1651531,1651599..1651753,1651813..1651961,1651993..1652139))	Theileria parva strain Muguga	3502609
TpMuguga_01g00783	CDS	TpMuguga_01g00783	NC_007344.1	1652498	1652995	D	uncharacterized protein	join(1652498..1652688,1652761..1652822,1652901..1652995)	Theileria parva strain Muguga	3503032
TpMuguga_01g00784	CDS	bdf1	NC_007344.1	1653300	1655041	D	Ankyrin repeats (3 copies) family protein	join(1653300..1654127,1654214..1655041)	Theileria parva strain Muguga	3503033
TpMuguga_01g00785	CDS	PMM	NC_007344.1	1655111	1656130	R	Phosphomannomutase 2	complement(join(1655111..1655218,1655251..1655328,1655401..1655470,1655516..1655659,1655690..1655781,1655814..1655890,1655921..1656035,1656068..1656130))	Theileria parva strain Muguga	3503034
TpMuguga_01g02370	CDS	TpMuguga_01g02370	NC_007344.1	1656237	1657273	D	uncharacterized protein	join(1656237..1656301,1656345..1656514,1656549..1656590,1656621..1656706,1656739..1656813,1656848..1657015,1657049..1657149,1657183..1657273)	Theileria parva strain Muguga	86047629
TpMuguga_01g00786	CDS	yipf5	NC_007344.1	1657547	1658962	D	putative integral membrane protein	join(1657547..1657640,1657707..1658845,1658876..1658962)	Theileria parva strain Muguga	3503035
TpMuguga_01g00787	CDS	trmt6	NC_007344.1	1659060	1660748	R	Gcd10p family protein	complement(join(1659060..1659155,1659190..1659311,1659343..1659762,1659836..1659960,1660020..1660103,1660197..1660302,1660338..1660600,1660639..1660748))	Theileria parva strain Muguga	3503036
TpMuguga_01g00788	CDS	mrpl19	NC_007344.1	1660980	1661601	R	ribosomal protein L11	complement(join(1660980..1661207,1661241..1661361,1661417..1661601))	Theileria parva strain Muguga	3503037
TpMuguga_01g00789	CDS	TpMuguga_01g00789	NC_007344.1	1661969	1663120	D	Actin family protein	1661969..1663120	Theileria parva strain Muguga	3503197
TpMuguga_01g00790	CDS	TpMuguga_01g00790	NC_007344.1	1663205	1664620	R	Nuclear protein Es2 family protein	complement(1663205..1664620)	Theileria parva strain Muguga	3503198
TpMuguga_01g00791	CDS	NSUN3	NC_007344.1	1664831	1666133	D	NOL1/NOP2/sun family protein	join(1664831..1665230,1665262..1665863,1665924..1666133)	Theileria parva strain Muguga	3503199
TpMuguga_01g00792	CDS	TpMuguga_01g00792	NC_007344.1	1666332	1668612	D	putative integral membrane protein	join(1666332..1666485,1666520..1666618,1666679..1666820,1666911..1667013,1667045..1667256,1667313..1667409,1667443..1667508,1667598..1668116,1668208..1668336,1668367..1668451,1668485..1668612)	Theileria parva strain Muguga	3503200
TpMuguga_01g00793	CDS	TpMuguga_01g00793	NC_007344.1	1669127	1669611	D	putative integral membrane protein	join(1669127..1669284,1669410..1669479,1669510..1669611)	Theileria parva strain Muguga	3503201
TpMuguga_01g00794	CDS	VPS35A	NC_007344.1	1669728	1672774	R	Vacuolar protein sorting-associated protein 35 family protein	complement(join(1669728..1669795,1669958..1670504,1670600..1670905,1671005..1671589,1671618..1671685,1671775..1672531,1672652..1672774))	Theileria parva strain Muguga	3503202
TpMuguga_01g00795	CDS	TpMuguga_01g00795	NC_007344.1	1673017	1674965	D	putative integral membrane protein	join(1673017..1674104,1674178..1674283,1674315..1674965)	Theileria parva strain Muguga	3503228
TpMuguga_01g00796	CDS	TpMuguga_01g00796	NC_007344.1	1675056	1675301	R	putative integral membrane protein	complement(join(1675056..1675223,1675254..1675301))	Theileria parva strain Muguga	3503229
TpMuguga_01g00797	CDS	Prpf6	NC_007344.1	1675544	1679278	D	Pre-mRNA-processing factor 6 domain protein	join(1675544..1675623,1675663..1675716,1675750..1676043,1676074..1676132,1676164..1676540,1676571..1676837,1676981..1677310,1677344..1677478,1677510..1677725,1677760..1677990,1678096..1678276,1678315..1678742,1678832..1678988,1679019..1679278)	Theileria parva strain Muguga	3503230
TpMuguga_01g02565	CDS	TpMuguga_01g02565	NC_007344.1	1679316	1679813	R	G-patch domain protein	complement(join(1679316..1679369,1679445..1679540,1679571..1679646,1679678..1679741,1679771..1679813))	Theileria parva strain Muguga	86047643
TpMuguga_01g00798	CDS	TpMuguga_01g00798	NC_007344.1	1680588	1682266	D	putative integral membrane protein	join(1680588..1680673,1680704..1680800,1680832..1680970,1681001..1681129,1681161..1681348,1681382..1681571,1681649..1681762,1681794..1681863,1681895..1681957,1681987..1682171,1682202..1682266)	Theileria parva strain Muguga	3503231
TpMuguga_01g00799	CDS	TIM9	NC_007344.1	1682559	1682834	D	Tim10/DDP family zinc finger family protein	1682559..1682834	Theileria parva strain Muguga	3503489
TpMuguga_01g00800	CDS	TpMuguga_01g00800	NC_007344.1	1682948	1685243	R	uncharacterized protein	complement(join(1682948..1684147,1684235..1684315,1684347..1685243))	Theileria parva strain Muguga	3503490
TpMuguga_01g02340	CDS	TpMuguga_01g02340	NC_007344.1	1685227	1686284	R	Ribosomal protein L1p/L10e family protein	complement(join(1685227..1685380,1685410..1685469,1685501..1685599,1685632..1685780,1685809..1685920,1685953..1686284))	Theileria parva strain Muguga	3503491
TpMuguga_01g02720	CDS	PGC	NC_007344.1	1686742	1688329	D	Eukaryotic aspartyl protease family protein	join(1686742..1687296,1687329..1687506,1687537..1687600,1687632..1687771,1687803..1687826,1687855..1687880,1687915..1688014,1688044..1688147,1688180..1688212,1688249..1688329)	Theileria parva strain Muguga	3503493
TpMuguga_01g00804	CDS	UBC5	NC_007344.1	1689119	1689833	D	Ubiquitin-conjugating enzyme E2 5	join(1689119..1689168,1689210..1689289,1689324..1689491,1689525..1689653,1689691..1689833)	Theileria parva strain Muguga	3503494
TpMuguga_01g00805	CDS	RAD54	NC_007344.1	1690089	1693154	D	SNF2 family protein	join(1690089..1690126,1690234..1690272,1690306..1690424,1690462..1690669,1690701..1690804,1690836..1690907,1690938..1691098,1691129..1691225,1691256..1691344,1691376..1691462,1691492..1691545,1691576..1691677,1691712..1691776,1691808..1691919,1691949..1692221,1692255..1692389,1692422..1692514,1692551..1692719,1692750..1692794,1692825..1693030,1693062..1693154)	Theileria parva strain Muguga	3503495
TpMuguga_01g00806	CDS	lsm5	NC_007344.1	1693162	1693468	R	putative U6 snRNA-associated Sm-like protein LSm5	complement(join(1693162..1693293,1693328..1693468))	Theileria parva strain Muguga	3503255
TpMuguga_01g00807	CDS	TpMuguga_01g00807	NC_007344.1	1693934	1697158	D	putative integral membrane protein	1693934..1697158	Theileria parva strain Muguga	86047604
TpMuguga_01g00808	CDS	Ube4b	NC_007344.1	1697425	1700757	D	Ubiquitin elongating factor core family protein	1697425..1700757	Theileria parva strain Muguga	3503257
TpMuguga_01g00809	CDS	rpa1	NC_007344.1	1701091	1707344	R	RNA polymerase Rpb1 domain 5 protein	complement(join(1701091..1701353,1701429..1701775,1701809..1701896,1701952..1704832,1704875..1706850,1706880..1707015,1707045..1707344))	Theileria parva strain Muguga	3503258
TpMuguga_01g00810	CDS	AGD6	NC_007344.1	1707787	1708889	R	putative GTPase activating protein for Arf family protein	complement(join(1707787..1708014,1708048..1708173,1708204..1708705,1708741..1708889))	Theileria parva strain Muguga	3503203
TpMuguga_01g00811	CDS	coaE	NC_007344.1	1709227	1710222	R	dephospho-CoA kinase	complement(join(1709227..1709344,1709376..1709523,1709557..1709779,1709811..1709869,1709900..1710020,1710079..1710222))	Theileria parva strain Muguga	3503204
TpMuguga_01g00812	CDS	TpMuguga_01g00812	NC_007344.1	1710483	1711663	R	uncharacterized protein	complement(join(1710483..1711325,1711356..1711424,1711464..1711534,1711591..1711663))	Theileria parva strain Muguga	3503205
TpMuguga_01g02255	CDS	TpMuguga_01g02255	NC_007344.1	1712013	1713517	R	uncharacterized protein	complement(join(1712013..1712548,1712623..1712925,1712959..1713517))	Theileria parva strain Muguga	3503206
TpMuguga_01g00815	CDS	PPWD1	NC_007344.1	1714346	1716648	R	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein	complement(join(1714346..1714414,1714476..1714687,1714734..1714946,1714978..1715078,1715130..1715209,1715262..1715339,1715389..1715733,1715763..1716009,1716040..1716223,1716254..1716370,1716405..1716494,1716526..1716564,1716600..1716648))	Theileria parva strain Muguga	3503208
TpMuguga_01g00816	CDS	TpMuguga_01g00816	NC_007344.1	1716890	1718262	D	uncharacterized protein	join(1716890..1716892,1716959..1717211,1717277..1717335,1717385..1717744,1717785..1717906,1717952..1718017,1718050..1718175,1718214..1718262)	Theileria parva strain Muguga	3503162
TpMuguga_01g00817	CDS	TpMuguga_01g00817	NC_007344.1	1718423	1719652	D	Sulfite exporter TauE/SafE family protein	1718423..1719652	Theileria parva strain Muguga	3503163
TpMuguga_01g00818	CDS	asnS	NC_007344.1	1719953	1722070	D	D; K and N; tRNA synthetases class II family protein	join(1719953..1720217,1720250..1720794,1720825..1720896,1720928..1720987,1721017..1721127,1721173..1721235,1721265..1721390,1721423..1721479,1721514..1721662,1721696..1721833,1721865..1721906,1721938..1722070)	Theileria parva strain Muguga	3503164
TpMuguga_01g00819	CDS	TpMuguga_01g00819	NC_007344.1	1722152	1722771	R	uncharacterized protein	complement(join(1722152..1722232,1722261..1722327,1722357..1722410,1722514..1722595,1722627..1722771))	Theileria parva strain Muguga	3503165
TpMuguga_01g00820	CDS	pikD	NC_007344.1	1723218	1726530	D	Phosphatidylinositol 3- and 4-kinase family protein	join(1723218..1723626,1723659..1724004,1724040..1724170,1724204..1726530)	Theileria parva strain Muguga	3503166
TpMuguga_01g00821	CDS	TpMuguga_01g00821	NC_007344.1	1726614	1727527	D	Nse4 C-terminal family protein	join(1726614..1727393,1727429..1727527)	Theileria parva strain Muguga	3503091
TpMuguga_01g00822	CDS	ddx31	NC_007344.1	1727583	1729776	R	DEAD/DEAH box helicase family protein	complement(join(1727583..1727862,1727891..1727991,1728031..1728355,1728402..1728652,1728681..1728793,1728824..1729162,1729193..1729295,1729327..1729776))	Theileria parva strain Muguga	3503092
TpMuguga_01g00823	CDS	TpMuguga_01g00823	NC_007344.1	1730481	1731644	D	uncharacterized protein	1730481..1731644	Theileria parva strain Muguga	3503093
TpMuguga_01g02715	CDS	TBCK	NC_007344.1	1731876	1735523	D	Rab-GTPase-TBC domain protein	join(1731876..1731957,1732026..1732709,1732743..1733653,1733712..1734089,1734123..1734217,1734250..1734346,1734376..1734481,1734516..1734683,1734723..1735092,1735126..1735225,1735275..1735523)	Theileria parva strain Muguga	3503094
TpMuguga_01g02635	CDS	TpMuguga_01g02635	NC_007344.1	1735826	1737040	D	putative integral membrane protein	join(1735826..1736253,1736287..1736446,1736505..1736558,1736588..1736953,1736987..1737040)	Theileria parva strain Muguga	3503095
TpMuguga_01g00826	CDS	HTATSF1	NC_007344.1	1737109	1738705	R	or RNP domain; RBD; RRM; RNA recognition motif family protein	complement(join(1737109..1737162,1737194..1737256,1737290..1737382,1737422..1737532,1737562..1737615,1737646..1737733,1737766..1737866,1737899..1738050,1738079..1738184,1738216..1738382,1738412..1738506,1738546..1738619,1738652..1738705))	Theileria parva strain Muguga	3503096
TpMuguga_01g00827	CDS	TpMuguga_01g00827	NC_007344.1	1738715	1739136	R	Signal recognition particle 9 kDa protein (SRP9) family protein	complement(join(1738715..1738764,1738800..1738926,1738961..1739029,1739065..1739136))	Theileria parva strain Muguga	3503072
TpMuguga_01g00828	CDS	nmd3	NC_007344.1	1739436	1741136	D	NMD3 family protein	join(1739436..1739647,1739719..1740061,1740093..1740462,1740493..1740821,1740853..1740986,1741016..1741136)	Theileria parva strain Muguga	3503073
TpMuguga_01g00829	CDS	brix1	NC_007344.1	1741243	1742346	D	Brix domain protein	join(1741243..1741482,1741513..1741571,1741605..1741705,1741741..1742028,1742060..1742154,1742186..1742245,1742275..1742346)	Theileria parva strain Muguga	3503074
TpMuguga_01g00830	CDS	TpMuguga_01g00830	NC_007344.1	1742550	1743671	D	FtsJ-like methyltransferase family protein	1742550..1743671	Theileria parva strain Muguga	3503075
TpMuguga_01g02770	CDS	Ap4b1	NC_007344.1	1743690	1746618	R	Adaptin N terminal region family protein	complement(join(1743690..1743834,1743868..1743926,1743956..1744408,1744438..1744503,1744534..1744608,1744640..1744724,1744755..1744836,1744903..1745077,1745131..1745268,1745303..1745466,1745496..1745797,1745829..1746511,1746544..1746618))	Theileria parva strain Muguga	3503077
TpMuguga_01g00833	CDS	TpMuguga_01g00833	NC_007344.1	1746836	1747107	D	uncharacterized protein	join(1746836..1746926,1746959..1747107)	Theileria parva strain Muguga	3503002
TpMuguga_01g00834	CDS	TpMuguga_01g00834	NC_007344.1	1747221	1750865	R	Microtubule-binding stalk of dynein motor family protein	complement(1747221..1750865)	Theileria parva strain Muguga	3503003
TpMuguga_01g00835	CDS	DHC1	NC_007344.1	1750915	1757117	R	Hydrolytic ATP binding site of dynein motor region D1 family protein	complement(join(1750915..1750926,1750995..1754558,1754748..1754927,1754961..1757117))	Theileria parva strain Muguga	3503004
TpMuguga_01g00836	CDS	TpMuguga_01g00836	NC_007344.1	1757572	1761028	D	RING-type zinc-finger family protein	join(1757572..1757721,1757753..1759449,1759539..1760121,1760198..1760291,1760381..1760522,1760601..1760943,1760975..1761028)	Theileria parva strain Muguga	3503005
TpMuguga_01g00837	CDS	TpMuguga_01g00837	NC_007344.1	1761141	1764377	D	LIM domain and RING finger protein YDR266C; LIM domain and RING finger protein	1761141..1764377	Theileria parva strain Muguga	3503006
TpMuguga_01g00838	CDS	ATR3	NC_007344.1	1764544	1766782	R	Flavodoxin family protein	complement(join(1764544..1764729,1764790..1764989,1765081..1766782))	Theileria parva strain Muguga	3503007
TpMuguga_01g00839	CDS	TpMuguga_01g00839	NC_007344.1	1766864	1767420	R	uncharacterized protein	complement(join(1766864..1767246,1767285..1767420))	Theileria parva strain Muguga	3502942
TpMuguga_01g00840	CDS	TpMuguga_01g00840	NC_007344.1	1767478	1771083	R	putative integral membrane protein	complement(join(1767478..1767577,1767639..1767688,1767719..1767802,1767835..1767919,1767949..1768049,1768134..1768906,1768984..1769040,1769070..1769226,1769301..1770117,1770149..1770195,1770229..1770336,1770384..1770537,1770567..1770700,1770775..1770866,1770903..1771083))	Theileria parva strain Muguga	3502943
TpMuguga_01g00841	CDS	TpMuguga_01g00841	NC_007344.1	1771248	1771599	R	tRNA intron endonuclease catalytic domain protein	complement(join(1771248..1771322,1771354..1771469,1771500..1771599))	Theileria parva strain Muguga	3502944
TpMuguga_01g00842	CDS	XRN4	NC_007344.1	1771710	1774394	R	XRN 5'-3' exonuclease N-terminus family protein	complement(join(1771710..1771770,1771800..1771979,1772054..1772209,1772240..1772292,1772322..1772489,1772550..1772704,1772742..1772865,1772896..1772978,1773043..1773226,1773283..1773397,1773461..1773606,1773643..1773798,1773844..1773938,1774002..1774083,1774115..1774160,1774213..1774394))	Theileria parva strain Muguga	3502945
TpMuguga_01g02665	CDS	TpMuguga_01g02665	NC_007344.1	1775026	1776168	D	Nucleoporin complex subunit 54 family protein	join(1775026..1775068,1775115..1775439,1775489..1775534,1775576..1775680,1775712..1775781,1775840..1776168)	Theileria parva strain Muguga	3502946
TpMuguga_01g02550	CDS	ube2m	NC_007344.1	1776155	1776817	D	NEDD8-conjugating enzyme Ubc12	join(1776155..1776203,1776237..1776421,1776518..1776817)	Theileria parva strain Muguga	3502406
TpMuguga_01g00845	CDS	RPT2A	NC_007344.1	1777001	1778721	D	26S proteasome regulatory subunit 4-like protein	join(1777001..1777034,1777101..1777214,1777297..1777373,1777452..1777905,1778004..1778199,1778280..1778721)	Theileria parva strain Muguga	3502407
TpMuguga_01g00846	CDS	TpMuguga_01g00846	NC_007344.1	1778854	1779784	D	Syntaxin 6 domain protein	join(1778854..1778897,1778955..1779017,1779059..1779278,1779309..1779374,1779404..1779510,1779616..1779784)	Theileria parva strain Muguga	3502408
TpMuguga_01g02485	CDS	TpMuguga_01g02485	NC_007344.1	1779934	1781217	R	uncharacterized protein	complement(1779934..1781217)	Theileria parva strain Muguga	86047636
TpMuguga_01g02695	CDS	TpMuguga_01g02695	NC_007344.1	1781361	1783874	R	uncharacterized protein	complement(join(1781361..1781486,1781518..1781733,1781864..1782002,1782043..1782287,1782321..1782524,1782578..1782668,1782731..1782825,1782858..1782995,1783044..1783130,1783161..1783874))	Theileria parva strain Muguga	3502410
TpMuguga_01g02855	CDS	TpMuguga_01g02855	NC_007344.1	1784009	1786111	D	mTERF family protein	1784009..1786111	Theileria parva strain Muguga	86047665
TpMuguga_01g02860	CDS	TpMuguga_01g02860	NC_007344.1	1786465	1787022	D	Translation initiation factor IF-3 domain protein	1786465..1787022	Theileria parva strain Muguga	3502648
TpMuguga_01g00850	CDS	FEN1	NC_007344.1	1787063	1788309	R	Flap endonuclease 1	complement(join(1787063..1787143,1787185..1787300,1787344..1787418,1787450..1787529,1787583..1787653,1787685..1788049,1788129..1788309))	Theileria parva strain Muguga	3502649
TpMuguga_01g00851	CDS	TpMuguga_01g00851	NC_007344.1	1789086	1790105	D	uncharacterized protein	1789086..1790105	Theileria parva strain Muguga	3502650
TpMuguga_01g00852	CDS	TpMuguga_01g00852	NC_007344.1	1790152	1792216	R	signal recognition particle protein SRP54	complement(join(1790152..1790374,1790448..1790553,1790632..1790776,1790856..1790983,1791053..1791153,1791210..1791609,1791665..1791818,1791892..1792044,1792139..1792216))	Theileria parva strain Muguga	3502651
TpMuguga_01g00853	CDS	tif211	NC_007344.1	1792500	1794056	R	Eukaryotic translation initiation factor 2 subunit alpha	complement(join(1792500..1792751,1792843..1792929,1792975..1793062,1793288..1793403,1793480..1793566,1793636..1793856,1793909..1794056))	Theileria parva strain Muguga	3502652
TpMuguga_01g00854	CDS	TpMuguga_01g00854	NC_007344.1	1794435	1795735	D	Tetratricopeptide repeat family protein	join(1794435..1794649,1794708..1794823,1794922..1795056,1795150..1795219,1795250..1795343,1795374..1795470,1795551..1795606,1795637..1795735)	Theileria parva strain Muguga	3502653
TpMuguga_01g00855	CDS	TpMuguga_01g00855	NC_007344.1	1795821	1796852	R	uncharacterized protein	complement(join(1795821..1796092,1796169..1796546,1796642..1796668,1796765..1796852))	Theileria parva strain Muguga	3503291
TpMuguga_01g00856	CDS	TpMuguga_01g00856	NC_007344.1	1797181	1798212	R	G-patch domain protein	complement(join(1797181..1797854,1797888..1798212))	Theileria parva strain Muguga	3503292
TpMuguga_01g00857	CDS	TpMuguga_01g00857	NC_007344.1	1798366	1799380	R	Gar1/Naf1 RNA binding region family protein	complement(join(1798366..1798438,1798472..1798542,1798577..1798717,1798766..1798876,1798946..1798988,1799021..1799146,1799215..1799270,1799303..1799380))	Theileria parva strain Muguga	3503293
TpMuguga_01g02840	CDS	TpMuguga_01g02840	NC_007344.1	1799603	1799878	D	uncharacterized protein	1799603..1799878	Theileria parva strain Muguga	86047662
TpMuguga_01g00858	CDS	TpMuguga_01g00858	NC_007344.1	1799967	1800766	R	Transcription factor S-II (TFIIS) family protein	complement(join(1799967..1800259,1800301..1800766))	Theileria parva strain Muguga	3503294
TpMuguga_01g00859	CDS	PTRH2	NC_007344.1	1800912	1801798	D	Peptidyl-tRNA hydrolase PTH2 family protein	join(1800912..1801158,1801260..1801402,1801473..1801547,1801579..1801630,1801749..1801798)	Theileria parva strain Muguga	3503295
TpMuguga_01g00860	CDS	TpMuguga_01g00860	NC_007344.1	1802078	1802814	D	Ubiquinol-cytochrome C reductase complex 14kD subunit family protein	join(1802078..1802300,1802347..1802616,1802714..1802814)	Theileria parva strain Muguga	3503296
TpMuguga_01g00861	CDS	TpMuguga_01g00861	NC_007344.1	1803295	1804405	D	haloacid dehalogenase-like hydrolase family protein	join(1803295..1803589,1803717..1804405)	Theileria parva strain Muguga	3503264
TpMuguga_01g00862	CDS	GUA1	NC_007344.1	1804754	1806316	D	GMP synthase (glutamine-hydrolyzing) domain protein	1804754..1806316	Theileria parva strain Muguga	3503265
TpMuguga_01g00863	CDS	PDIL2-3	NC_007344.1	1806553	1808156	R	Thioredoxin family protein	complement(join(1806553..1806648,1806678..1806790,1806856..1807144,1807274..1807421,1807459..1807534,1807568..1807693,1807747..1807898,1807993..1808156))	Theileria parva strain Muguga	3503266
TpMuguga_01g00864	CDS	TpMuguga_01g00864	NC_007344.1	1808439	1810229	D	uncharacterized protein	join(1808439..1808713,1808770..1808845,1808902..1808981,1809014..1809130,1809210..1809390,1809424..1809450,1809521..1809555,1809605..1809692,1809724..1809793,1809825..1809881,1809914..1810025,1810115..1810229)	Theileria parva strain Muguga	3503267
TpMuguga_01g00865	CDS	srsf1b	NC_007344.1	1810325	1811570	R	or RNP domain; RBD; RRM; RNA recognition motif family protein	complement(join(1810325..1811009,1811156..1811397,1811466..1811570))	Theileria parva strain Muguga	3503268
TpMuguga_01g00866	CDS	Chd2	NC_007344.1	1813175	1818625	D	SNF2 family protein	1813175..1818625	Theileria parva strain Muguga	3503430
TpMuguga_01g00867	CDS	Tube1	NC_007344.1	1818988	1820322	D	tubulin/FtsZ family GTPase domain protein	1818988..1820322	Theileria parva strain Muguga	3503431
TpMuguga_01g00868	CDS	TpMuguga_01g00868	NC_007344.1	1820424	1821250	R	Tp3	complement(join(1820424..1820666,1820696..1821250))	Theileria parva strain Muguga	3503432
TpMuguga_01g00869	CDS	TpMuguga_01g00869	NC_007344.1	1821630	1822980	D	uncharacterized protein	join(1821630..1821677,1821714..1821879,1821912..1821964,1822021..1822054,1822093..1822221,1822253..1822934,1822971..1822980)	Theileria parva strain Muguga	3503433
TpMuguga_01g00870	CDS	TpMuguga_01g00870	NC_007344.1	1823168	1824672	D	uncharacterized protein	join(1823168..1823364,1823397..1823701,1823732..1823793,1823839..1823872,1823911..1824031,1824067..1824162,1824196..1824314,1824344..1824489,1824652..1824672)	Theileria parva strain Muguga	3503434
TpMuguga_01g00871	CDS	RAD23A	NC_007344.1	1824777	1825951	D	DNA repair protein Rad23	join(1824777..1825004,1825070..1825255,1825289..1825393,1825423..1825485,1825524..1825667,1825697..1825951)	Theileria parva strain Muguga	3503435
TpMuguga_01g00872	CDS	TpMuguga_01g00872	NC_007344.1	1826887	1829481	D	KH domain protein	1826887..1829481	Theileria parva strain Muguga	3503385
TpMuguga_01g00873	CDS	TpMuguga_01g00873	NC_007344.1	1829699	1830577	R	uncharacterized protein	complement(join(1829699..1829815,1829847..1829986,1830056..1830134,1830167..1830325,1830363..1830472,1830523..1830577))	Theileria parva strain Muguga	3503386
TpMuguga_01g00874	CDS	PBE2	NC_007344.1	1830922	1832082	R	Proteasome subunit beta type-5-B	complement(join(1830922..1830944,1831013..1831099,1831193..1831284,1831356..1831468,1831502..1831609,1831640..1831915,1831981..1832082))	Theileria parva strain Muguga	3503387
TpMuguga_01g00875	CDS	TpMuguga_01g00875	NC_007344.1	1832257	1834003	R	uncharacterized protein	complement(join(1832257..1832309,1832343..1832458,1832490..1833120,1833154..1833304,1833335..1833490,1833520..1833651,1833693..1833796,1833841..1834003))	Theileria parva strain Muguga	3503388
TpMuguga_01g00876	CDS	TpMuguga_01g00876	NC_007344.1	1834183	1834719	R	putative integral membrane protein	complement(join(1834183..1834275,1834328..1834402,1834442..1834498,1834600..1834719))	Theileria parva strain Muguga	3503389
TpMuguga_01g00877	CDS	RAB2A	NC_007344.1	1834898	1835881	R	uncharacterized protein	complement(join(1834898..1834959,1835022..1835064,1835130..1835198,1835229..1835302,1835375..1835502,1835533..1835755,1835833..1835881))	Theileria parva strain Muguga	3503390
TpMuguga_01g00878	CDS	TpMuguga_01g00878	NC_007344.1	1836300	1837169	R	uncharacterized protein	complement(join(1836300..1836491,1836523..1836636,1836678..1836751,1836811..1836875,1836925..1837047,1837102..1837169))	Theileria parva strain Muguga	3503343
TpMuguga_01g00879	CDS	TpMuguga_01g00879	NC_007344.1	1837798	1838682	D	or RNP domain; RBD; RRM; RNA recognition motif family protein	1837798..1838682	Theileria parva strain Muguga	3503344
TpMuguga_01g00880	CDS	RIOK1	NC_007344.1	1838780	1840342	R	RIO1 family protein	complement(1838780..1840342)	Theileria parva strain Muguga	3503345
TpMuguga_01g00881	CDS	CKB3	NC_007344.1	1840742	1841647	D	Casein kinase II subunit beta-3	join(1840742..1840843,1840873..1840966,1840997..1841328,1841379..1841480,1841512..1841591,1841623..1841647)	Theileria parva strain Muguga	3503346
TpMuguga_01g02560	CDS	TpMuguga_01g02560	NC_007344.1	1841619	1842575	R	putative integral membrane protein	complement(join(1841619..1842031,1842061..1842134,1842162..1842283,1842320..1842402,1842473..1842575))	Theileria parva strain Muguga	86047642
TpMuguga_01g00882	CDS	TpMuguga_01g00882	NC_007344.1	1843100	1844113	D	uncharacterized protein	1843100..1844113	Theileria parva strain Muguga	3503347
TpMuguga_01g00883	CDS	TpMuguga_01g00883	NC_007344.1	1844126	1846198	D	uncharacterized protein	join(1844126..1844294,1844325..1846198)	Theileria parva strain Muguga	3503348
TpMuguga_01g00884	CDS	EIF5A	NC_007344.1	1846596	1847075	D	translation elongation factor IF5A	1846596..1847075	Theileria parva strain Muguga	3503422
TpMuguga_01g00885	CDS	tin-10	NC_007344.1	1847315	1847672	D	Mitochondrial import inner membrane translocase subunit Tim10	join(1847315..1847391,1847474..1847570,1847601..1847672)	Theileria parva strain Muguga	3503423
TpMuguga_01g00886	CDS	cchl	NC_007344.1	1847805	1848460	R	Cytochrome c/c1 heme lyase family protein	complement(join(1847805..1847946,1848018..1848460))	Theileria parva strain Muguga	3503424
TpMuguga_01g00887	CDS	PNO1	NC_007344.1	1848902	1849600	D	Pre-rRNA-processing protein pno1	1848902..1849600	Theileria parva strain Muguga	3503425
TpMuguga_01g00888	CDS	TpMuguga_01g00888	NC_007344.1	1850185	1850721	D	Reticulon family protein	1850185..1850721	Theileria parva strain Muguga	3503426
TpMuguga_01g00890	CDS	TpMuguga_01g00890	NC_007344.1	1851702	1852265	D	uncharacterized protein	1851702..1852265	Theileria parva strain Muguga	3503428
TpMuguga_01g00891	CDS	TpMuguga_01g00891	NC_007344.1	1852609	1853407	D	MED7 family protein	join(1852609..1852839,1852871..1853011,1853113..1853154,1853184..1853260,1853290..1853334,1853365..1853407)	Theileria parva strain Muguga	3503429
TpMuguga_01g00892	CDS	rplD	NC_007344.1	1853492	1855301	R	Ribosomal protein L4/L1 family protein	complement(join(1853492..1853539,1853646..1853858,1853892..1854000,1854059..1854174,1854205..1854314,1854349..1854477,1854508..1854652,1854715..1854923,1854953..1855061,1855170..1855301))	Theileria parva strain Muguga	3503279
TpMuguga_01g00893	CDS	TpMuguga_01g00893	NC_007344.1	1855565	1856030	R	putative integral membrane protein	complement(join(1855565..1855661,1855694..1855792,1855840..1855895,1856028..1856030))	Theileria parva strain Muguga	3503280
TpMuguga_01g00894	CDS	TpMuguga_01g00894	NC_007344.1	1857957	1858694	D	uncharacterized protein	1857957..1858694	Theileria parva strain Muguga	3503281
TpMuguga_01g00895	CDS	cbc	NC_007344.1	1859553	1861420	R	Protein CLP1-like protein	complement(join(1859553..1859839,1859880..1860042,1860075..1860397,1860430..1860499,1860562..1860706,1860757..1860866,1860900..1861007,1861077..1861223,1861319..1861420))	Theileria parva strain Muguga	3503282
TpMuguga_01g00896	CDS	TpMuguga_01g00896	NC_007344.1	1861521	1861878	D	uncharacterized protein	join(1861521..1861604,1861660..1861745,1861779..1861878)	Theileria parva strain Muguga	3503283
TpMuguga_01g00897	CDS	TpMuguga_01g00897	NC_007344.1	1862124	1864745	D	putative integral membrane protein	1862124..1864745	Theileria parva strain Muguga	3503284
TpMuguga_01g00898	CDS	EXOSC7	NC_007344.1	1864787	1865696	R	3' exoribonuclease domain 1 protein	complement(join(1864787..1865060,1865090..1865241,1865277..1865498,1865538..1865696))	Theileria parva strain Muguga	3503103
TpMuguga_01g00899	CDS	POLD1	NC_007344.1	1865863	1870101	D	DNA polymerase family B family protein	join(1865863..1865888,1866021..1866193,1866272..1866507,1866539..1866613,1866645..1867059,1867091..1867621,1867654..1867801,1867853..1868123,1868155..1868211,1868241..1868402,1868434..1868514,1868546..1868669,1868702..1868809,1868840..1868895,1868925..1869096,1869128..1869190,1869227..1869289,1869474..1869620,1869653..1869819,1869851..1869924,1869963..1870101)	Theileria parva strain Muguga	3503104
TpMuguga_01g00900	CDS	TpMuguga_01g00900	NC_007344.1	1870282	1872417	R	Noc2p family protein	complement(join(1870282..1870647,1870678..1870761,1870891..1872417))	Theileria parva strain Muguga	3503105
TpMuguga_01g00901	CDS	TpMuguga_01g00901	NC_007344.1	1872557	1873909	R	Protein similar to CwfJ C-terminus 1 family protein	complement(join(1872557..1873231,1873409..1873640,1873703..1873835,1873867..1873909))	Theileria parva strain Muguga	3503106
TpMuguga_01g00902	CDS	TpMuguga_01g00902	NC_007344.1	1874024	1876673	R	uncharacterized protein	complement(join(1874024..1874152,1874183..1874347,1874380..1875060,1875115..1875285,1875315..1876502,1876533..1876673))	Theileria parva strain Muguga	3503038
TpMuguga_01g00903	CDS	TpMuguga_01g00903	NC_007344.1	1877385	1877733	D	uncharacterized protein	join(1877385..1877502,1877537..1877733)	Theileria parva strain Muguga	3503039
TpMuguga_01g00904	CDS	FIG4	NC_007344.1	1877746	1880343	D	SacI-like proteiny domain protein	1877746..1880343	Theileria parva strain Muguga	3503040
TpMuguga_01g00905	CDS	TpMuguga_01g00905	NC_007344.1	1880493	1882120	R	uncharacterized protein	complement(join(1880493..1880565,1880596..1880650,1880751..1881015,1881043..1881138,1881239..1882120))	Theileria parva strain Muguga	3503041
TpMuguga_01g00906	CDS	TpMuguga_01g00906	NC_007344.1	1882206	1882784	R	putative integral membrane protein	complement(1882206..1882784)	Theileria parva strain Muguga	3503042
TpMuguga_01g00907	CDS	TpMuguga_01g00907	NC_007344.1	1883222	1884123	R	3' exoribonuclease domain 1 protein	complement(join(1883222..1883355,1883390..1883731,1883811..1884123))	Theileria parva strain Muguga	3503043
TpMuguga_01g00908	CDS	PSMB7	NC_007344.1	1884170	1885163	R	Proteasome subunit beta type-7	complement(join(1884170..1884444,1884534..1884977,1885067..1885163))	Theileria parva strain Muguga	3503044
TpMuguga_01g00909	CDS	TpMuguga_01g00909	NC_007344.1	1885286	1885903	D	uncharacterized protein	join(1885286..1885387,1885425..1885492,1885525..1885903)	Theileria parva strain Muguga	3502742
TpMuguga_01g00910	CDS	TpMuguga_01g00910	NC_007344.1	1886164	1889248	D	uncharacterized protein	join(1886164..1887071,1887111..1887195,1887252..1887399,1887472..1887762,1887818..1887991,1888032..1888159,1888252..1888926,1888968..1889046,1889082..1889248)	Theileria parva strain Muguga	3502743
TpMuguga_01g00911	CDS	TpMuguga_01g00911	NC_007344.1	1889323	1889748	D	uncharacterized protein	1889323..1889748	Theileria parva strain Muguga	3502744
TpMuguga_01g00912	CDS	TpMuguga_01g00912	NC_007344.1	1889953	1890419	D	uncharacterized protein	join(1889953..1890324,1890354..1890419)	Theileria parva strain Muguga	3502745
TpMuguga_01g00913	CDS	TpMuguga_01g00913	NC_007344.1	1891218	1891804	D	putative integral membrane protein	join(1891218..1891622,1891724..1891804)	Theileria parva strain Muguga	3502746
TpMuguga_01g00914	CDS	TpMuguga_01g00914	NC_007344.1	1892052	1893290	D	uncharacterized protein	join(1892052..1892399,1892496..1893290)	Theileria parva strain Muguga	3502747
TpMuguga_01g00915	CDS	TpMuguga_01g00915	NC_007344.1	1893397	1894304	R	uncharacterized protein	complement(join(1893397..1893502,1893532..1893610,1893690..1893755,1893785..1893832,1893859..1893880,1893911..1894040,1894083..1894142,1894183..1894304))	Theileria parva strain Muguga	3502748
TpMuguga_01g00916	CDS	TpMuguga_01g00916	NC_007344.1	1894528	1894932	D	RNAse P Rpr2/Rpp21/SNM1 subunit domain protein	1894528..1894932	Theileria parva strain Muguga	3502681
TpMuguga_01g00917	CDS	TpMuguga_01g00917	NC_007344.1	1895243	1896460	D	uncharacterized protein	1895243..1896460	Theileria parva strain Muguga	3502682
TpMuguga_01g00918	CDS	Sec31a	NC_007344.1	1896840	1900874	R	WD domain G-beta repeat protein	complement(join(1896840..1900393,1900496..1900874))	Theileria parva strain Muguga	3502683
TpMuguga_01g00919	CDS	TpMuguga_01g00919	NC_007344.1	1901248	1904840	R	uncharacterized protein	complement(join(1901248..1901378,1901480..1902281,1902327..1902589,1902619..1902892,1902924..1904840))	Theileria parva strain Muguga	3502684
TpMuguga_01g00920	CDS	TpMuguga_01g00920	NC_007344.1	1905008	1906674	D	uncharacterized protein	join(1905008..1905229,1905260..1905484,1905534..1906501,1906534..1906602,1906632..1906674)	Theileria parva strain Muguga	3502685
TpMuguga_01g00921	CDS	TpMuguga_01g00921	NC_007344.1	1906812	1912191	D	HAD ATPase P-type IC family protein	join(1906812..1907284,1907316..1907353,1907384..1908888,1908920..1908979,1909042..1909222,1909283..1909481,1909551..1909645,1909676..1909747,1909842..1910536,1910591..1910710,1910762..1910832,1910916..1911101,1911179..1911312,1911410..1911467,1911500..1911625,1911676..1911877,1912054..1912191)	Theileria parva strain Muguga	3502790
TpMuguga_01g00923	CDS	PRP5	NC_007344.1	1912200	1914009	D	DEAD/DEAH box helicase family protein	join(1912200..1912340,1912371..1912410,1912451..1912593,1912623..1912714,1912743..1912932,1912971..1913005,1913185..1913355,1913394..1913526,1913569..1913615,1913646..1913756,1913785..1913886,1913916..1914009)	Theileria parva strain Muguga	3502791
TpMuguga_01g00924	CDS	RPL31	NC_007344.1	1914103	1914647	R	60S ribosomal protein L31-1	complement(join(1914103..1914300,1914372..1914520,1914638..1914647))	Theileria parva strain Muguga	3502792
TpMuguga_01g00925	CDS	scy1	NC_007344.1	1915285	1917524	D	non-SMC mitotic condensation complex subunit 1 family protein	join(1915285..1915468,1915570..1915722,1915754..1915876,1915906..1916056,1916272..1916410,1916466..1916651,1916730..1917266,1917295..1917457,1917487..1917524)	Theileria parva strain Muguga	3502793
TpMuguga_01g00926	CDS	COF1	NC_007344.1	1917679	1918073	R	Cofilin/tropomyosin-type actin-binding family protein	complement(join(1917679..1917842,1917875..1918073))	Theileria parva strain Muguga	3503138
TpMuguga_01g00927	CDS	VBP1	NC_007344.1	1919590	1920518	R	Prefoldin subunit family protein	complement(join(1919590..1919712,1919828..1919917,1920032..1920136,1920198..1920309,1920341..1920411,1920453..1920518))	Theileria parva strain Muguga	3503139
TpMuguga_01g00928	CDS	TpMuguga_01g00928	NC_007344.1	1920953	1921337	D	p25-alpha family protein	join(1920953..1921093,1921125..1921337)	Theileria parva strain Muguga	3503140
TpMuguga_01g00929	CDS	atpH	NC_007344.1	1921345	1922016	R	ATP synthase subunit delta, mitochondrial precursor	complement(1921345..1922016)	Theileria parva strain Muguga	3503141
TpMuguga_01g00930	CDS	TpMuguga_01g00930	NC_007344.1	1922620	1924947	D	uncharacterized protein	1922620..1924947	Theileria parva strain Muguga	3503142
TpMuguga_01g02265	CDS	TpMuguga_01g02265	NC_007344.1	1925143	1927726	D	uncharacterized protein	join(1925143..1925479,1925590..1926073,1926103..1926205,1926268..1926402,1926512..1927284,1927369..1927726)	Theileria parva strain Muguga	3503144
TpMuguga_01g00933	CDS	TpMuguga_01g00933	NC_007344.1	1927905	1931933	R	uncharacterized protein	complement(1927905..1931933)	Theileria parva strain Muguga	3503157
TpMuguga_01g00934	CDS	hspD	NC_007344.1	1932222	1935251	R	Hsp90 family protein	complement(1932222..1935251)	Theileria parva strain Muguga	3503158
TpMuguga_01g02740	CDS	TpMuguga_01g02740	NC_007344.1	1935582	1936761	D	Fumble family protein	join(1935582..1935806,1935836..1936459,1936490..1936587,1936617..1936761)	Theileria parva strain Muguga	86047654
TpMuguga_01g02745	CDS	TpMuguga_01g02745	NC_007344.1	1936911	1938702	D	uncharacterized protein	join(1936911..1937060,1937092..1937187,1937218..1937282,1937324..1937411,1937439..1937614,1937644..1937722,1937752..1937828,1937860..1937943,1937972..1938217,1938246..1938702)	Theileria parva strain Muguga	3503159
TpMuguga_01g02575	CDS	TpMuguga_01g02575	NC_007344.1	1938975	1943042	D	SNF2 family protein	join(1938975..1939851,1939997..1940469,1940620..1941107,1941141..1941612,1941754..1941905,1942049..1942241,1942291..1942423,1942505..1942641,1942956..1943042)	Theileria parva strain Muguga	3503160
TpMuguga_01g02405	CDS	TpMuguga_01g02405	NC_007344.1	1943366	1944028	D	uncharacterized protein	1943366..1944028	Theileria parva strain Muguga	86047632
TpMuguga_01g00937	CDS	CDC48	NC_007344.1	1944073	1947052	R	Cell division control protein 48-like protein	complement(join(1944073..1944833,1945034..1945102,1945159..1945498,1945637..1945749,1945797..1946162,1946266..1947052))	Theileria parva strain Muguga	3503161
TpMuguga_01g00938	CDS	TpMuguga_01g00938	NC_007344.1	1948228	1950204	D	uncharacterized protein	join(1948228..1948656,1948716..1949856,1949998..1950128,1950169..1950204)	Theileria parva strain Muguga	3503085
TpMuguga_01g00939	CDS	TpMuguga_01g00939	NC_007344.1	1950363	1951286	D	putative integral membrane protein	1950363..1951286	Theileria parva strain Muguga	3503086
TpMuguga_01g00940	CDS	TpMuguga_01g00940	NC_007344.1	1951475	1952032	D	LSM domain protein	join(1951475..1951685,1951755..1952032)	Theileria parva strain Muguga	3503087
TpMuguga_01g00941	CDS	TpMuguga_01g00941	NC_007344.1	1952319	1954449	D	uncharacterized protein	join(1952319..1952387,1952453..1952596,1952639..1952679,1952765..1953966,1954103..1954182,1954222..1954316,1954347..1954449)	Theileria parva strain Muguga	3503088
TpMuguga_01g00942	CDS	TpMuguga_01g00942	NC_007344.1	1954635	1956343	R	Choline/ethanolamine kinase family protein	complement(join(1954635..1954756,1954854..1955141,1955311..1955410,1955523..1955645,1955677..1955823,1955854..1955954,1956028..1956343))	Theileria parva strain Muguga	3503089
TpMuguga_01g00943	CDS	NEK2	NC_007344.1	1956768	1958141	R	Protein kinase domain protein	complement(join(1956768..1956887,1956918..1957037,1957121..1957252,1957283..1957428,1957550..1957684,1957714..1957807,1957837..1957909,1957942..1958045,1958121..1958141))	Theileria parva strain Muguga	3503090
TpMuguga_01g00944	CDS	TpMuguga_01g00944	NC_007344.1	1958737	1959935	R	uncharacterized protein	complement(join(1958737..1959233,1959293..1959935))	Theileria parva strain Muguga	3503119
TpMuguga_01g00945	CDS	PAB1	NC_007344.1	1960657	1962642	R	polyadenylate binding family protein	complement(1960657..1962642)	Theileria parva strain Muguga	3503120
TpMuguga_01g00946	CDS	TpMuguga_01g00946	NC_007344.1	1963245	1964352	D	Ribosome biogenesis regulatory protein (RRS1) family protein	join(1963245..1963246,1963292..1963396,1963529..1963707,1963740..1963877,1963968..1964041,1964071..1964135,1964208..1964352)	Theileria parva strain Muguga	3503121
TpMuguga_01g00947	CDS	grpE	NC_007344.1	1964550	1965420	D	GrpE family protein	join(1964550..1964858,1964968..1965420)	Theileria parva strain Muguga	3503122
TpMuguga_01g00948	CDS	TpMuguga_01g00948	NC_007344.1	1965560	1966389	R	uncharacterized protein	complement(join(1965560..1966034,1966148..1966389))	Theileria parva strain Muguga	3503123
TpMuguga_01g00949	CDS	SmD1	NC_007344.1	1966871	1967248	D	Small nuclear ribonucleoprotein SmD1b	1966871..1967248	Theileria parva strain Muguga	3503124
TpMuguga_01g00950	CDS	tim44	NC_007344.1	1967630	1969103	D	Tim44-like domain protein	join(1967630..1968002,1968032..1968298,1968373..1968548,1968578..1968689,1968774..1968872,1968903..1968991,1969062..1969103)	Theileria parva strain Muguga	3503125
TpMuguga_01g00951	CDS	TIM17-2	NC_007344.1	1969107	1969716	R	Mitochondrial import inner membrane translocase subunit TIM17	complement(join(1969107..1969149,1969218..1969314,1969347..1969716))	Theileria parva strain Muguga	3502868
TpMuguga_01g00952	CDS	TpMuguga_01g00952	NC_007344.1	1970176	1973605	D	Dos2-interacting transcription regulator of RNA-Pol-II family protein	join(1970176..1970334,1970365..1973451,1973483..1973605)	Theileria parva strain Muguga	3502869
TpMuguga_01g02280	CDS	TpMuguga_01g02280	NC_007344.1	1973665	1975582	D	Phytanoyl-CoA dioxygenase (PhyH) family protein	join(1973665..1973728,1973812..1974251,1974314..1974584,1974615..1974694,1974729..1974795,1974828..1974930,1974962..1974999,1975045..1975166,1975207..1975240,1975273..1975344,1975380..1975454,1975491..1975582)	Theileria parva strain Muguga	3502870
TpMuguga_01g00955	CDS	TpMuguga_01g00955	NC_007344.1	1975664	1976867	D	putative integral membrane protein	join(1975664..1975785,1975818..1976018,1976077..1976170,1976202..1976290,1976328..1976388,1976418..1976448,1976496..1976524,1976560..1976671,1976794..1976867)	Theileria parva strain Muguga	3502872
TpMuguga_01g00956	CDS	BCKDHB	NC_007344.1	1977102	1978644	D	transketolase pyrimidine binding domain protein	join(1977102..1977265,1977411..1977522,1977586..1977681,1977744..1978079,1978151..1978333,1978465..1978644)	Theileria parva strain Muguga	3502873
TpMuguga_01g02335	CDS	thrS1	NC_007344.1	1978834	1982069	R	threonine--tRNA ligase	complement(join(1978834..1979048,1979098..1979316,1979405..1979550,1979628..1979697,1979756..1979913,1979965..1980146,1980266..1980361,1980392..1980453,1980503..1980959,1981039..1981130,1981165..1981354,1981413..1981555,1981633..1981869,1981901..1982069))	Theileria parva strain Muguga	3502660
TpMuguga_01g02400	CDS	atg7	NC_007344.1	1982175	1984579	R	ThiF family protein	complement(join(1982175..1982288,1982318..1982418,1982452..1982624,1982689..1982838,1982913..1983048,1983079..1983169,1983223..1983304,1983336..1984579))	Theileria parva strain Muguga	3502661
TpMuguga_01g00959	CDS	TpMuguga_01g00959	NC_007344.1	1984641	1987678	R	uncharacterized protein	complement(join(1984641..1987358,1987391..1987678))	Theileria parva strain Muguga	3502662
TpMuguga_01g00960	CDS	TpMuguga_01g00960	NC_007344.1	1987945	1989366	R	putative integral membrane protein	complement(1987945..1989366)	Theileria parva strain Muguga	3502663
TpMuguga_01g00961	CDS	NEW1	NC_007344.1	1989727	1992144	R	ABC transporter family protein	complement(join(1989727..1991219,1991271..1992144))	Theileria parva strain Muguga	3502664
TpMuguga_01g00962	CDS	TpMuguga_01g00962	NC_007344.1	1993836	1994894	D	EAP30/Vps36 family protein	1993836..1994894	Theileria parva strain Muguga	3502434
TpMuguga_01g02790	CDS	TpMuguga_01g02790	NC_007344.1	1994938	1995302	R	uncharacterized protein	complement(join(1994938..1995066,1995097..1995131,1995161..1995302))	Theileria parva strain Muguga	86047657
TpMuguga_01g00963	CDS	ncbp2	NC_007344.1	1995448	1996142	D	Nuclear cap-binding protein subunit 2 domain protein	join(1995448..1995603,1995765..1996142)	Theileria parva strain Muguga	3502435
TpMuguga_01g00964	CDS	RPL35	NC_007344.1	1996581	1997024	D	60S ribosomal protein L35	join(1996581..1996583,1996656..1997024)	Theileria parva strain Muguga	3502436
TpMuguga_01g00965	CDS	PGK	NC_007344.1	1997238	1998643	D	Phosphoglycerate kinase 1	join(1997238..1997288,1997447..1998643)	Theileria parva strain Muguga	3502437
TpMuguga_01g00966	CDS	TpMuguga_01g00966	NC_007344.1	1999631	2005864	D	uncharacterized protein	1999631..2005864	Theileria parva strain Muguga	3502438
TpMuguga_01g00967	CDS	TpMuguga_01g00967	NC_007344.1	2006162	2007835	D	putative integral membrane protein	join(2006162..2006295,2006338..2007541,2007581..2007835)	Theileria parva strain Muguga	3502439
TpMuguga_01g00968	CDS	Ogg1	NC_007344.1	2008127	2009350	R	8-oxoguanine DNA glycosylase domain protein	complement(join(2008127..2008190,2008219..2008293,2008352..2008450,2008551..2009021,2009083..2009185,2009263..2009350))	Theileria parva strain Muguga	3502440
TpMuguga_01g00969	CDS	TpMuguga_01g00969	NC_007344.1	2010570	2011426	D	ATP-dependent Clp protease adaptor protein ClpS family protein	join(2010570..2010722,2010823..2010902,2010999..2011118,2011171..2011316,2011374..2011426)	Theileria parva strain Muguga	3503496
TpMuguga_01g00970	CDS	imp1	NC_007344.1	2011428	2012031	R	Mitochondrial inner membrane protease subunit 1	complement(join(2011428..2011528,2011595..2011841,2011927..2012031))	Theileria parva strain Muguga	3503497
TpMuguga_01g00971	CDS	TpMuguga_01g00971	NC_007344.1	2012145	2013019	D	uncharacterized protein	join(2012145..2012297,2012335..2012449,2012511..2012762,2012792..2012850,2012882..2013019)	Theileria parva strain Muguga	3503498
TpMuguga_01g00972	CDS	TpMuguga_01g00972	NC_007344.1	2013175	2014167	R	uncharacterized protein	complement(2013175..2014167)	Theileria parva strain Muguga	3503499
TpMuguga_01g00973	CDS	TpMuguga_01g00973	NC_007344.1	2014756	2017102	R	Zinc finger C3HC4 type (RING finger) family protein	complement(join(2014756..2014831,2014862..2014912,2014944..2015091,2015125..2016414,2016466..2016629,2016684..2017102))	Theileria parva strain Muguga	3503500
TpMuguga_01g02615	CDS	TpMuguga_01g02615	NC_007344.1	2017940	2018188	D	uncharacterized protein	2017940..2018188	Theileria parva strain Muguga	86047646
TpMuguga_01g00974	CDS	TpMuguga_01g00974	NC_007344.1	2018303	2019147	R	putative integral membrane protein	complement(join(2018303..2018351,2018383..2018491,2018521..2018603,2018678..2018856,2018885..2019010,2019067..2019147))	Theileria parva strain Muguga	3503501
TpMuguga_01g00975	CDS	RPOT3	NC_007344.1	2019456	2023133	R	DNA-dependent RNA polymerase family protein	complement(2019456..2023133)	Theileria parva strain Muguga	3503502
TpMuguga_01g00976	CDS	TpMuguga_01g00976	NC_007344.1	2023289	2025407	D	putative integral membrane protein	join(2023289..2023602,2023667..2023774,2023816..2023961,2024082..2024432,2024466..2024650,2024704..2024871,2024904..2025013,2025047..2025175,2025207..2025309,2025342..2025407)	Theileria parva strain Muguga	3503503
TpMuguga_01g00977	CDS	TpMuguga_01g00977	NC_007344.1	2025579	2026337	R	Ubiquitin family protein	complement(join(2025579..2025778,2025869..2026012,2026103..2026174,2026277..2026337))	Theileria parva strain Muguga	3503504
TpMuguga_01g00978	CDS	RFC2	NC_007344.1	2026371	2027911	R	DNA polymerase III delta subunit family protein	complement(join(2026371..2026447,2026486..2026582,2026644..2026706,2026787..2026846,2026889..2026945,2027023..2027085,2027118..2027376,2027429..2027510,2027576..2027628,2027683..2027762,2027795..2027911))	Theileria parva strain Muguga	3503505
TpMuguga_01g00979	CDS	TpMuguga_01g00979	NC_007344.1	2028093	2028819	D	uncharacterized protein	join(2028093..2028215,2028311..2028359,2028399..2028434,2028464..2028520,2028580..2028640,2028670..2028737,2028779..2028819)	Theileria parva strain Muguga	3503506
TpMuguga_01g00980	CDS	rps26b	NC_007344.1	2028887	2029297	R	40S ribosomal protein S26-1	complement(join(2028887..2029050,2029117..2029297))	Theileria parva strain Muguga	3503366
TpMuguga_01g00981	CDS	TpMuguga_01g00981	NC_007344.1	2029835	2030593	D	E2F-associated phosphofamily protein	join(2029835..2029895,2029955..2030050,2030145..2030220,2030347..2030593)	Theileria parva strain Muguga	3503367
TpMuguga_01g00982	CDS	TpMuguga_01g00982	NC_007344.1	2031000	2033921	D	uncharacterized protein	2031000..2033921	Theileria parva strain Muguga	3503368
TpMuguga_01g00983	CDS	CPK1	NC_007344.1	2033980	2036020	R	Protein kinase domain protein	complement(join(2033980..2034105,2034177..2034295,2034328..2034436,2034523..2034956,2035070..2035164,2035248..2035776,2035903..2036020))	Theileria parva strain Muguga	3503369
TpMuguga_01g00984	CDS	TpMuguga_01g00984	NC_007344.1	2036312	2037688	D	Thrombospondin type 1 domain protein	join(2036312..2036913,2036948..2037308,2037341..2037521,2037555..2037688)	Theileria parva strain Muguga	3503370
TpMuguga_01g02680	CDS	TpMuguga_01g02680	NC_007344.1	2037717	2038304	D	uncharacterized protein	join(2037717..2037859,2037893..2038007,2038037..2038111,2038164..2038217,2038251..2038304)	Theileria parva strain Muguga	3503371
TpMuguga_01g02675	CDS	wdr82-a	NC_007344.1	2038286	2039684	D	WD domain G-beta repeat protein	join(2038286..2038341,2038377..2038508,2038538..2038644,2038708..2038771,2038802..2038910,2038988..2039113,2039143..2039199,2039247..2039436,2039475..2039546,2039578..2039684)	Theileria parva strain Muguga	3503409
TpMuguga_01g00987	CDS	TpMuguga_01g00987	NC_007344.1	2040388	2043375	D	P104 protein	2040388..2043375	Theileria parva strain Muguga	3503410
TpMuguga_01g02425	CDS	tfb2	NC_007344.1	2044010	2046018	D	Transcription factor Tfb2 family protein	join(2044010..2044852,2044921..2046018)	Theileria parva strain Muguga	3503412
TpMuguga_01g00990	CDS	TpMuguga_01g00990	NC_007344.1	2046180	2047241	R	uncharacterized protein	complement(join(2046180..2046536,2046690..2046887,2046931..2047017,2047164..2047241))	Theileria parva strain Muguga	3503413
TpMuguga_01g00991	CDS	TpMuguga_01g00991	NC_007344.1	2047787	2048820	D	Synaptobrevin family protein	join(2047787..2048013,2048167..2048356,2048408..2048533,2048577..2048689,2048781..2048820)	Theileria parva strain Muguga	3503414
TpMuguga_01g00992	CDS	LSM6	NC_007344.1	2048872	2049225	D	LSM domain protein	join(2048872..2048959,2049011..2049124,2049194..2049225)	Theileria parva strain Muguga	3503209
TpMuguga_01g00993	CDS	TpMuguga_01g00993	NC_007344.1	2049300	2052725	R	putative integral membrane protein	complement(2049300..2052725)	Theileria parva strain Muguga	3503210
TpMuguga_01g00994	CDS	PRPS2	NC_007344.1	2053687	2054731	R	ribose-phosphate diphosphokinase family protein	complement(join(2053687..2054301,2054369..2054731))	Theileria parva strain Muguga	3503211
TpMuguga_01g00995	CDS	TpMuguga_01g00995	NC_007344.1	2055090	2055821	R	uncharacterized protein	complement(2055090..2055821)	Theileria parva strain Muguga	3503212
TpMuguga_01g00996	CDS	TpMuguga_01g00996	NC_007344.1	2055926	2056403	D	uncharacterized protein	join(2055926..2055938,2055971..2056033,2056147..2056230,2056289..2056357,2056390..2056403)	Theileria parva strain Muguga	3503213
TpMuguga_01g00997	CDS	ERCC1	NC_007344.1	2056548	2057297	R	DNA repair protein rad10 family protein	complement(join(2056548..2056606,2056668..2056946,2056976..2057184,2057224..2057297))	Theileria parva strain Muguga	3503214
TpMuguga_01g00998	CDS	TpMuguga_01g00998	NC_007344.1	2057977	2058506	D	uncharacterized protein	join(2057977..2057992,2058044..2058111,2058144..2058506)	Theileria parva strain Muguga	3503215
TpMuguga_01g00999	CDS	TpMuguga_01g00999	NC_007344.1	2058577	2059014	D	putative integral membrane protein	join(2058577..2058583,2058621..2058739,2058813..2058913,2058945..2059014)	Theileria parva strain Muguga	3503059
TpMuguga_01g01000	CDS	TpMuguga_01g01000	NC_007344.1	2059092	2060985	R	uncharacterized protein	complement(join(2059092..2059326,2059384..2059504,2059540..2060523,2060557..2060659,2060722..2060985))	Theileria parva strain Muguga	3503060
TpMuguga_01g01001	CDS	TpMuguga_01g01001	NC_007344.1	2061430	2063613	D	uncharacterized protein	2061430..2063613	Theileria parva strain Muguga	3503061
TpMuguga_01g01002	CDS	yloA	NC_007344.1	2063694	2065777	R	Uncharacterized protein YloA; uncharacterized protein	complement(join(2063694..2064212,2064314..2064573,2064640..2065777))	Theileria parva strain Muguga	3503062
TpMuguga_01g01003	CDS	tssc1	NC_007344.1	2065798	2067113	R	Protein TSSC1	complement(join(2065798..2065908,2065986..2066456,2066493..2066580,2066646..2066739,2066770..2066920,2066949..2067113))	Theileria parva strain Muguga	3503063
TpMuguga_01g01004	CDS	ALATS	NC_007344.1	2067191	2070603	R	alanine--tRNA ligase	complement(join(2067191..2067240,2067274..2067625,2067700..2068005,2068119..2068570,2068674..2070603))	Theileria parva strain Muguga	3503064
TpMuguga_01g02810	CDS	VPS53	NC_007344.1	2070842	2073292	D	Vps53-like domain protein	join(2070842..2071215,2071282..2071661,2071692..2071750,2071789..2071878,2071968..2072295,2072328..2072660,2072693..2073049,2073097..2073189,2073219..2073292)	Theileria parva strain Muguga	3503008
TpMuguga_01g01007	CDS	TIM50	NC_007344.1	2073836	2074954	R	NLI interacting factor-like phosphatase family protein	complement(2073836..2074954)	Theileria parva strain Muguga	3503010
TpMuguga_01g01008	CDS	TpMuguga_01g01008	NC_007344.1	2075195	2077114	R	DWNN domain protein	complement(2075195..2077114)	Theileria parva strain Muguga	3503011
TpMuguga_01g01009	CDS	TpMuguga_01g01009	NC_007344.1	2077209	2078798	D	RNA pseudouridylate synthase family protein	join(2077209..2077307,2077468..2078312,2078432..2078798)	Theileria parva strain Muguga	3503012
TpMuguga_01g01010	CDS	TpMuguga_01g01010	NC_007344.1	2078994	2081137	D	Transcriptional repressor TCF25 family protein	join(2078994..2079293,2079421..2079547,2079600..2079774,2079862..2079994,2080074..2080193,2080292..2081137)	Theileria parva strain Muguga	3503013
TpMuguga_01g01011	CDS	TpMuguga_01g01011	NC_007344.1	2081919	2082989	D	uncharacterized protein	2081919..2082989	Theileria parva strain Muguga	3502812
TpMuguga_01g01012	CDS	ARP4	NC_007344.1	2083183	2084719	R	Actin family protein	complement(join(2083183..2084322,2084450..2084719))	Theileria parva strain Muguga	3502813
TpMuguga_01g01013	CDS	TpMuguga_01g01013	NC_007344.1	2085167	2086550	R	uncharacterized protein	complement(join(2085167..2085483,2085626..2085802,2085905..2086550))	Theileria parva strain Muguga	3502814
TpMuguga_01g01014	CDS	TpMuguga_01g01014	NC_007344.1	2086834	2087795	D	small nuclear RNA activating complex (SNAPc) subunit SNAP43	join(2086834..2087013,2087188..2087317,2087395..2087529,2087617..2087795)	Theileria parva strain Muguga	3502815
TpMuguga_01g01015	CDS	gpn2	NC_007344.1	2087822	2088839	D	Conserved hypothetical ATP binding family protein	join(2087822..2088047,2088156..2088227,2088262..2088362,2088417..2088839)	Theileria parva strain Muguga	3502816
TpMuguga_01g01016	CDS	TpMuguga_01g01016	NC_007344.1	2089277	2090093	D	uncharacterized protein	join(2089277..2089397,2089428..2089505,2089578..2089636,2089671..2089701,2089780..2089854,2089885..2089944,2090026..2090093)	Theileria parva strain Muguga	3502817
TpMuguga_01g01017	CDS	mocs3	NC_007344.1	2090276	2092332	R	uncharacterized protein	complement(join(2090276..2090802,2090882..2091017,2091067..2091394,2091457..2091560,2091635..2091716,2091768..2091819,2091897..2092332))	Theileria parva strain Muguga	3502818
TpMuguga_01g01018	CDS	TpMuguga_01g01018	NC_007344.1	2092872	2095261	D	uncharacterized protein	join(2092872..2093043,2093148..2095261)	Theileria parva strain Muguga	3502587
TpMuguga_01g01019	CDS	TpMuguga_01g01019	NC_007344.1	2095412	2097797	R	Helicase associated domain (HA2) family protein	complement(join(2095412..2097007,2097095..2097633,2097743..2097797))	Theileria parva strain Muguga	3502588
TpMuguga_01g01020	CDS	TpMuguga_01g01020	NC_007344.1	2097948	2099285	R	putative integral membrane protein	complement(join(2097948..2098219,2098317..2098490,2098559..2098843,2098885..2099010,2099153..2099285))	Theileria parva strain Muguga	3502589
TpMuguga_01g01021	CDS	TpMuguga_01g01021	NC_007344.1	2099644	2103713	D	putative integral membrane protein	join(2099644..2099962,2100063..2100197,2100248..2101267,2101317..2102897,2102991..2103562,2103633..2103713)	Theileria parva strain Muguga	3502590
TpMuguga_01g01022	CDS	TpMuguga_01g01022	NC_007344.1	2103802	2105270	R	uncharacterized protein	complement(join(2103802..2104143,2104235..2104390,2104461..2105270))	Theileria parva strain Muguga	3502591
TpMuguga_01g01023	CDS	MRTO4	NC_007344.1	2105534	2106503	D	Ribosomal protein L10 family protein	join(2105534..2105742,2105834..2105924,2105994..2106125,2106190..2106351,2106420..2106503)	Theileria parva strain Muguga	3502700
TpMuguga_01g01024	CDS	argS	NC_007344.1	2106561	2109074	D	tRNA synthetases class I (R) family protein	join(2106561..2106656,2106726..2106797,2106893..2106993,2107129..2107394,2107461..2108245,2108312..2108537,2108595..2108771,2108806..2109074)	Theileria parva strain Muguga	3502701
TpMuguga_01g01025	CDS	TpMuguga_01g01025	NC_007344.1	2109181	2110442	R	putative integral membrane protein	complement(join(2109181..2109401,2109488..2110442))	Theileria parva strain Muguga	3502702
TpMuguga_01g01026	CDS	TpMuguga_01g01026	NC_007344.1	2110752	2112066	D	uncharacterized protein	join(2110752..2110861,2110911..2112066)	Theileria parva strain Muguga	3502703
TpMuguga_01g01027	CDS	UTP15	NC_007344.1	2112121	2113867	R	WD domain G-beta repeat protein	complement(join(2112121..2112436,2112536..2113494,2113673..2113867))	Theileria parva strain Muguga	3502704
TpMuguga_01g02245	CDS	CCAMK	NC_007344.1	2114508	2116063	D	Protein kinase domain protein	join(2114508..2114570,2114656..2114867,2114955..2115502,2115570..2115680,2115777..2116063)	Theileria parva strain Muguga	3502705
TpMuguga_01g02435	CDS	TpMuguga_01g02435	NC_007344.1	2116220	2121722	D	Bromodomain protein	join(2116220..2120017,2120073..2120523,2120585..2120940,2120973..2121097,2121179..2121722)	Theileria parva strain Muguga	3502737
TpMuguga_01g02440	CDS	TpMuguga_01g02440	NC_007344.1	2121816	2123129	D	AAR2 family protein	2121816..2123129	Theileria parva strain Muguga	86047633
TpMuguga_01g01032	CDS	nifk	NC_007344.1	2123236	2123953	D	or RNP domain; RBD; RRM; uncharacterized protein	join(2123236..2123382,2123425..2123577,2123666..2123953)	Theileria parva strain Muguga	3502738
TpMuguga_01g01033	CDS	TpMuguga_01g01033	NC_007344.1	2124104	2125565	D	uncharacterized protein	join(2124104..2124330,2124389..2124573,2124606..2125091,2125192..2125565)	Theileria parva strain Muguga	3502739
TpMuguga_01g01034	CDS	TpMuguga_01g01034	NC_007344.1	2125709	2126385	D	uncharacterized protein	join(2125709..2126059,2126122..2126385)	Theileria parva strain Muguga	3502740
TpMuguga_01g01035	CDS	TpMuguga_01g01035	NC_007344.1	2126447	2127657	R	Myb-like DNA-binding domain protein	complement(join(2126447..2127565,2127595..2127657))	Theileria parva strain Muguga	3502741
TpMuguga_01g01036	CDS	TpMuguga_01g01036	NC_007344.1	2127812	2129694	D	RAP domain protein	join(2127812..2129352,2129517..2129694)	Theileria parva strain Muguga	3502926
TpMuguga_01g02300	CDS	TpMuguga_01g02300	NC_007344.1	2129704	2130024	R	uncharacterized protein	complement(join(2129704..2129797,2129828..2130024))	Theileria parva strain Muguga	86047626
TpMuguga_01g01037	CDS	TpMuguga_01g01037	NC_007344.1	2130162	2131583	R	uncharacterized protein	complement(join(2130162..2130194,2130229..2130336,2130439..2130575,2130625..2130844,2130928..2131014,2131050..2131339,2131373..2131583))	Theileria parva strain Muguga	3502927
TpMuguga_01g02060	CDS	TpMuguga_01g02060	NC_007344.1	2131900	2136840	D	uncharacterized protein	2131900..2136840	Theileria parva strain Muguga	3502929
TpMuguga_01g01040	CDS	SUMO1	NC_007344.1	2137118	2137493	D	Small ubiquitin-related modifier 1	join(2137118..2137195,2137227..2137323,2137363..2137493)	Theileria parva strain Muguga	3502930
TpMuguga_01g01041	CDS	clpP2	NC_007344.1	2137749	2138725	D	Clp protease family protein	join(2137749..2137802,2137844..2137883,2137914..2137997,2138029..2138095,2138127..2138304,2138336..2138553,2138587..2138725)	Theileria parva strain Muguga	3502931
TpMuguga_01g01042	CDS	TpMuguga_01g01042	NC_007344.1	2141952	2147337	D	GCC2 and GCC3 family protein	join(2141952..2146369,2146408..2147190,2147301..2147337)	Theileria parva strain Muguga	3502932
TpMuguga_01g01043	CDS	TpMuguga_01g01043	NC_007344.1	2147549	2152564	R	GCC2 and GCC3 family protein	complement(join(2147549..2148770,2148809..2151679,2151715..2151823,2151856..2152564))	Theileria parva strain Muguga	3502933
TpMuguga_01g01044	CDS	TpMuguga_01g01044	NC_007344.1	2152658	2155697	R	uncharacterized protein	complement(join(2152658..2153883,2153914..2154234,2154266..2154616,2154647..2154802,2154835..2154969,2154999..2155331,2155519..2155543,2155623..2155697))	Theileria parva strain Muguga	3502934
TpMuguga_01g01045	CDS	TpMuguga_01g01045	NC_007344.1	2156323	2158795	D	elongation factor 4	join(2156323..2156719,2156752..2156902,2156932..2157100,2157131..2157218,2157248..2157384,2157417..2157535,2157569..2157658,2157736..2158140,2158172..2158461,2158492..2158679,2158712..2158795)	Theileria parva strain Muguga	3502935
TpMuguga_01g01046	CDS	TOM40-1	NC_007344.1	2159302	2160707	D	mitochondrial import receptor subunit Tom40	join(2159302..2159588,2159619..2159870,2159903..2160045,2160111..2160187,2160218..2160284,2160316..2160473,2160507..2160707)	Theileria parva strain Muguga	3502936
TpMuguga_01g01047	CDS	TpMuguga_01g01047	NC_007344.1	2160802	2161451	R	uncharacterized protein	complement(join(2160802..2160979,2161045..2161451))	Theileria parva strain Muguga	3503471
TpMuguga_01g02595	CDS	TpMuguga_01g02595	NC_007344.1	2161835	2165636	D	Patatin-like phospholipase family protein	join(2161835..2163866,2163951..2164091,2164189..2164270,2164386..2164816,2164929..2165007,2165102..2165255,2165316..2165636)	Theileria parva strain Muguga	3503473
TpMuguga_01g01050	CDS	aco1	NC_007344.1	2165760	2169151	R	aconitate hydratase 1	complement(join(2165760..2165825,2165858..2165976,2166045..2166181,2166262..2166601,2166697..2167285,2167398..2167573,2167618..2168326,2168414..2168684,2168718..2168822,2168916..2169151))	Theileria parva strain Muguga	3503474
TpMuguga_01g01051	CDS	Rpl8	NC_007344.1	2169595	2170512	R	60S ribosomal protein L8	complement(join(2169595..2170352,2170494..2170512))	Theileria parva strain Muguga	3503475
TpMuguga_01g01052	CDS	SKI6	NC_007344.1	2171039	2172002	R	3' exoribonuclease domain 1 protein	complement(join(2171039..2171185,2171216..2171341,2171393..2171449,2171484..2171860,2171942..2172002))	Theileria parva strain Muguga	3503476
TpMuguga_01g02630	CDS	TpMuguga_01g02630	NC_007344.1	2172361	2172591	R	Yos1-like family protein	complement(2172361..2172591)	Theileria parva strain Muguga	86047648
TpMuguga_01g01053	CDS	TpMuguga_01g01053	NC_007344.1	2172918	2175420	D	glutamate--tRNA ligase	join(2172918..2173357,2173389..2173465,2173519..2173911,2173944..2174068,2174111..2174953,2175012..2175174,2175266..2175351,2175385..2175420)	Theileria parva strain Muguga	3503316
TpMuguga_01g01054	CDS	TpMuguga_01g01054	NC_007344.1	2175781	2178160	D	uncharacterized protein	join(2175781..2176132,2176167..2177186,2177219..2177412,2177570..2178160)	Theileria parva strain Muguga	3503317
TpMuguga_01g02195	CDS	TpMuguga_01g02195	NC_007344.1	2178163	2178450	R	uncharacterized protein	complement(2178163..2178450)	Theileria parva strain Muguga	86047618
TpMuguga_01g01055	CDS	TpMuguga_01g01055	NC_007344.1	2178618	2180270	R	uncharacterized protein	complement(join(2178618..2178709,2178743..2178828,2178861..2179345,2179377..2179603,2179633..2179696,2179742..2179906,2179986..2180057,2180124..2180270))	Theileria parva strain Muguga	3503318
TpMuguga_01g01056	CDS	TpMuguga_01g01056	NC_007344.1	2180811	2181653	D	merozoite surface antigen p32	2180811..2181653	Theileria parva strain Muguga	3503319
TpMuguga_01g01057	CDS	TpMuguga_01g01057	NC_007344.1	2181834	2182452	R	uncharacterized protein	complement(join(2181834..2181916,2181978..2182452))	Theileria parva strain Muguga	3503320
TpMuguga_01g01058	CDS	TpMuguga_01g01058	NC_007344.1	2182825	2184486	R	uncharacterized protein	complement(join(2182825..2184190,2184222..2184333,2184375..2184486))	Theileria parva strain Muguga	3503321
TpMuguga_01g01059	CDS	CDC5L	NC_007344.1	2184983	2187535	R	pre-mRNA splicing factor component family protein	complement(join(2184983..2185012,2185043..2185191,2185222..2185439,2185473..2185549,2185591..2186020,2186085..2186197,2186232..2186318,2186349..2186492,2186525..2186717,2186749..2187122,2187158..2187344,2187390..2187535))	Theileria parva strain Muguga	3503322
TpMuguga_01g01060	CDS	TpMuguga_01g01060	NC_007344.1	2187789	2189340	R	RAP domain protein	complement(join(2187789..2187878,2187910..2188059,2188089..2188187,2188219..2188341,2188372..2188460,2188491..2188662,2188697..2188990,2189025..2189150,2189188..2189340))	Theileria parva strain Muguga	3503349
TpMuguga_01g01061	CDS	TpMuguga_01g01061	NC_007344.1	2189455	2190989	D	uncharacterized protein	join(2189455..2189580,2189635..2189885,2189916..2190030,2190059..2190126,2190156..2190324,2190355..2190487,2190520..2190989)	Theileria parva strain Muguga	3503350
TpMuguga_01g01062	CDS	RFC3	NC_007344.1	2191362	2192660	R	Replication factor C domain protein	complement(join(2191362..2191538,2191576..2191645,2191676..2191914,2191946..2192008,2192044..2192162,2192201..2192314,2192352..2192424,2192460..2192660))	Theileria parva strain Muguga	3503352
TpMuguga_01g02105	CDS	TpMuguga_01g02105	NC_007344.1	2192739	2194066	R	FF domain protein	complement(join(2192739..2192793,2192833..2192892,2192924..2193039,2193075..2193161,2193190..2193699,2193730..2193876,2193925..2193982,2194014..2194066))	Theileria parva strain Muguga	86047613
TpMuguga_01g02610	CDS	TpMuguga_01g02610	NC_007344.1	2194205	2199704	R	uncharacterized protein	complement(join(2194205..2194587,2194635..2196947,2197100..2199704))	Theileria parva strain Muguga	3503353
TpMuguga_01g02455	CDS	TpMuguga_01g02455	NC_007344.1	2200213	2202162	R	CHY zinc finger family protein	complement(join(2200213..2200302,2200335..2200496,2200529..2200682,2200715..2200802,2200839..2200914,2200945..2201137,2201169..2201287,2201319..2201463,2201504..2202162))	Theileria parva strain Muguga	86047634
TpMuguga_01g01064	CDS	TpMuguga_01g01064	NC_007344.1	2202531	2203798	D	uncharacterized protein	join(2202531..2202581,2202736..2203119,2203150..2203715,2203750..2203798)	Theileria parva strain Muguga	3503126
TpMuguga_01g01065	CDS	TpMuguga_01g01065	NC_007344.1	2203777	2205923	R	uncharacterized protein	complement(join(2203777..2203821,2203851..2203940,2203972..2204142,2204172..2204299,2204328..2204464,2204494..2205059,2205093..2205923))	Theileria parva strain Muguga	3503127
TpMuguga_01g01066	CDS	TpMuguga_01g01066	NC_007344.1	2206243	2207469	D	chaperone protein DnaJ	join(2206243..2206348,2206386..2206537,2206568..2206670,2206700..2206821,2206851..2206970,2207001..2207160,2207192..2207337,2207368..2207469)	Theileria parva strain Muguga	3503128
TpMuguga_01g01067	CDS	TpMuguga_01g01067	NC_007344.1	2208329	2209325	D	SNARE associated Golgi family protein	join(2208329..2208410,2208443..2208648,2208680..2208812,2208845..2209183,2209213..2209325)	Theileria parva strain Muguga	3503129
TpMuguga_01g02815	CDS	TpMuguga_01g02815	NC_007344.1	2209376	2209849	R	uncharacterized protein	complement(join(2209376..2209425,2209455..2209584,2209613..2209715,2209797..2209849))	Theileria parva strain Muguga	86047659
TpMuguga_01g01068	CDS	TpMuguga_01g01068	NC_007344.1	2210134	2210896	R	uncharacterized protein	complement(join(2210134..2210180,2210294..2210546,2210579..2210656,2210876..2210896))	Theileria parva strain Muguga	3503130
TpMuguga_01g01069	CDS	STP2	NC_007344.1	2211530	2212954	R	Sugar (and other) transporter family protein	complement(2211530..2212954)	Theileria parva strain Muguga	3503151
TpMuguga_01g01070	CDS	RpL40	NC_007344.1	2214060	2214455	R	60S ribosomal protein L40	complement(2214060..2214455)	Theileria parva strain Muguga	3503152
TpMuguga_01g01071	CDS	TpMuguga_01g01071	NC_007344.1	2215085	2216445	D	uncharacterized protein	join(2215085..2215413,2215443..2215695,2215726..2216203,2216234..2216287,2216320..2216363,2216404..2216445)	Theileria parva strain Muguga	3503153
TpMuguga_01g01072	CDS	qtrt1	NC_007344.1	2216489	2217980	D	tRNA-guanine transglycosylase	join(2216489..2216629,2216672..2216807,2216840..2216964,2216994..2217094,2217143..2217338,2217367..2217572,2217600..2217675,2217704..2217845,2217880..2217980)	Theileria parva strain Muguga	3503154
TpMuguga_01g01073	CDS	CPK4	NC_007344.1	2218370	2220008	D	Calcium-dependent protein kinase 4	join(2218370..2219102,2219136..2219302,2219333..2219593,2219624..2219732,2219764..2220008)	Theileria parva strain Muguga	3503155
TpMuguga_01g01074	CDS	TpMuguga_01g01074	NC_007344.1	2220452	2221518	D	N1O; haloacid dehalogenase-like hydrolase Tp14	join(2220452..2220524,2220579..2220788,2220845..2221518)	Theileria parva strain Muguga	3503156
TpMuguga_01g01075	CDS	TpMuguga_01g01075	NC_007344.1	2221768	2222754	D	haloacid dehalogenase-like hydrolase family protein	join(2221768..2221975,2222087..2222754)	Theileria parva strain Muguga	3503014
TpMuguga_01g01076	CDS	TpMuguga_01g01076	NC_007344.1	2223005	2223914	D	haloacid dehalogenase-like hydrolase family protein	join(2223005..2223212,2223244..2223914)	Theileria parva strain Muguga	3503015
TpMuguga_01g01077	CDS	TpMuguga_01g01077	NC_007344.1	2224167	2225077	D	Tp17; haloacid dehalogenase-like hydrolase	join(2224167..2224374,2224407..2225077)	Theileria parva strain Muguga	3503016
TpMuguga_01g01078	CDS	TpMuguga_01g01078	NC_007344.1	2225460	2226408	D	Tp21; haloacid dehalogenase-like hydrolase	join(2225460..2225649,2225684..2226408)	Theileria parva strain Muguga	3503017
TpMuguga_01g01079	CDS	TpMuguga_01g01079	NC_007344.1	2226482	2226975	R	uncharacterized protein	complement(join(2226482..2226562,2226592..2226975))	Theileria parva strain Muguga	3503018
TpMuguga_01g01080	CDS	TpMuguga_01g01080	NC_007344.1	2227033	2228388	R	uncharacterized protein	complement(join(2227033..2227081,2227118..2227189,2227220..2227573,2227608..2228124,2228160..2228388))	Theileria parva strain Muguga	3503019
TpMuguga_01g01081	CDS	TpMuguga_01g01081	NC_007344.1	2228788	2229822	D	Tp22; haloacid dehalogenase-like hydrolase	join(2228788..2229007,2229119..2229822)	Theileria parva strain Muguga	3503020
TpMuguga_01g01082	CDS	TpMuguga_01g01082	NC_007344.1	2230190	2231180	D	Tp23; haloacid dehalogenase-like hydrolase	join(2230190..2230427,2230507..2231180)	Theileria parva strain Muguga	3502832
TpMuguga_01g01083	CDS	TpMuguga_01g01083	NC_007344.1	2231647	2232502	D	haloacid dehalogenase-like hydrolase family protein	join(2231647..2231797,2231832..2232502)	Theileria parva strain Muguga	3502833
TpMuguga_01g01084	CDS	TpMuguga_01g01084	NC_007344.1	2232673	2235204	D	uncharacterized protein	2232673..2235204	Theileria parva strain Muguga	3502834
TpMuguga_01g01085	CDS	TpMuguga_01g01085	NC_007344.1	2235275	2236213	R	Nucleosome assembly protein (NAP) family protein	complement(join(2235275..2235496,2235526..2235645,2235712..2235870,2235901..2236004,2236035..2236087,2236161..2236213))	Theileria parva strain Muguga	3502835
TpMuguga_01g01086	CDS	TpMuguga_01g01086	NC_007344.1	2236349	2236568	D	uncharacterized protein	join(2236349..2236417,2236515..2236568)	Theileria parva strain Muguga	86047605
TpMuguga_01g02035	CDS	TpMuguga_01g02035	NC_007344.1	2236571	2236846	D	uncharacterized protein	join(2236571..2236682,2236809..2236846)	Theileria parva strain Muguga	86047607
TpMuguga_01g01087	CDS	TpMuguga_01g01087	NC_007344.1	2236887	2237608	D	uncharacterized protein	join(2236887..2237032,2237100..2237389,2237433..2237608)	Theileria parva strain Muguga	3502837
TpMuguga_01g01088	CDS	ria1	NC_007344.1	2237799	2242015	D	Elongation factor Tu GTP binding domain protein	join(2237799..2239224,2239277..2239437,2239476..2239658,2239691..2239798,2239866..2239974,2240032..2240352,2240385..2240832,2240911..2241289,2241355..2241439,2241477..2241733,2241829..2241915,2241947..2242015)	Theileria parva strain Muguga	3502772
TpMuguga_01g01089	CDS	TpMuguga_01g01089	NC_007344.1	2242036	2242781	R	N-terminal domain of CBF1 interacting co-repressor CIR family protein	complement(join(2242036..2242619,2242718..2242781))	Theileria parva strain Muguga	3502773
TpMuguga_01g01090	CDS	PDCD2	NC_007344.1	2243157	2244370	D	C-terminal putative domain protein	join(2243157..2243628,2243658..2243834,2243901..2244370)	Theileria parva strain Muguga	3502774
TpMuguga_01g01091	CDS	TpMuguga_01g01091	NC_007344.1	2244758	2246464	D	Tp12	2244758..2246464	Theileria parva strain Muguga	3502775
TpMuguga_01g01092	CDS	Trip1	NC_007344.1	2246765	2248110	D	WD domain G-beta repeat protein	join(2246765..2246854,2246955..2247000,2247031..2247184,2247237..2247486,2247558..2247659,2247700..2247756,2247787..2248110)	Theileria parva strain Muguga	3502776
TpMuguga_01g02260	CDS	TpMuguga_01g02260	NC_007344.1	2248263	2249942	R	uncharacterized protein	complement(join(2248263..2248406,2248438..2248744,2248781..2248873,2248936..2249154,2249189..2249245,2249357..2249483,2249555..2249942))	Theileria parva strain Muguga	3502777
TpMuguga_01g02290	CDS	csd	NC_007344.1	2249939	2251714	R	Aminotransferase class-V family protein	complement(join(2249939..2250084,2250158..2250338,2250369..2250497,2250557..2250700,2250731..2250925,2250955..2251072,2251113..2251228,2251311..2251391,2251430..2251714))	Theileria parva strain Muguga	3502665
TpMuguga_01g01095	CDS	TpMuguga_01g01095	NC_007344.1	2251967	2253791	D	uncharacterized protein	join(2251967..2252198,2252264..2252437,2252515..2253423,2253490..2253595,2253626..2253791)	Theileria parva strain Muguga	3502666
TpMuguga_01g01096	CDS	TpMuguga_01g01096	NC_007344.1	2253871	2254654	R	EF-1 guanine nucleotide exchange domain protein	complement(join(2253871..2254295,2254363..2254654))	Theileria parva strain Muguga	3502667
TpMuguga_01g01097	CDS	KIF18B	NC_007344.1	2255249	2257608	D	Kinesin motor domain protein	join(2255249..2257357,2257447..2257608)	Theileria parva strain Muguga	3502668
TpMuguga_01g01098	CDS	TpMuguga_01g01098	NC_007344.1	2257698	2258687	D	transcription factor IIA alpha/beta subunit	join(2257698..2257761,2257795..2257853,2257936..2258016,2258084..2258118,2258155..2258422,2258490..2258561,2258634..2258687)	Theileria parva strain Muguga	3502669
TpMuguga_01g01099	CDS	PCKR1	NC_007344.1	2258901	2259887	D	Peptidyl-prolyl cis-trans isomerase A	join(2258901..2258978,2259040..2259094,2259161..2259237,2259272..2259377,2259406..2259500,2259534..2259637,2259670..2259748,2259783..2259887)	Theileria parva strain Muguga	3502670
TpMuguga_01g01100	CDS	Slc25a3	NC_007344.1	2260045	2261217	D	Mitochondrial carrier family protein	join(2260045..2260590,2260642..2260801,2260834..2261045,2261167..2261217)	Theileria parva strain Muguga	3502712
TpMuguga_01g01101	CDS	xab1	NC_007344.1	2261318	2262667	D	GPN-loop GTPase 1	join(2261318..2261394,2261480..2261576,2261633..2261663,2261694..2261790,2261821..2261939,2261970..2262072,2262105..2262154,2262192..2262282,2262345..2262396,2262462..2262544,2262604..2262667)	Theileria parva strain Muguga	3502713
TpMuguga_01g01102	CDS	PUS1	NC_007344.1	2262802	2264610	D	tRNA pseudouridine synthase family protein	join(2262802..2263028,2263165..2263599,2263655..2264195,2264262..2264404,2264529..2264610)	Theileria parva strain Muguga	3502714
TpMuguga_01g01103	CDS	PPIH	NC_007344.1	2264709	2265362	D	Peptidyl-prolyl cis-trans isomerase H	join(2264709..2264978,2265048..2265362)	Theileria parva strain Muguga	3502715
TpMuguga_01g01104	CDS	Arfgap1	NC_007344.1	2265414	2266964	R	putative GTPase activating protein for Arf family protein	complement(2265414..2266964)	Theileria parva strain Muguga	3502716
TpMuguga_01g01105	CDS	TpMuguga_01g01105	NC_007344.1	2267135	2268601	R	uncharacterized protein	complement(2267135..2268601)	Theileria parva strain Muguga	3502717
TpMuguga_01g01106	CDS	TpMuguga_01g01106	NC_007344.1	2269424	2270470	R	uncharacterized protein	complement(join(2269424..2270208,2270245..2270470))	Theileria parva strain Muguga	3502482
TpMuguga_01g01107	CDS	TpMuguga_01g01107	NC_007344.1	2271282	2276353	D	Myosin head (motor domain) family protein	join(2271282..2271641,2271701..2271986,2272041..2274403,2274495..2274673,2274750..2274948,2275019..2275493,2275563..2276353)	Theileria parva strain Muguga	3502483
TpMuguga_01g01108	CDS	TpMuguga_01g01108	NC_007344.1	2276610	2279609	D	Paraquat-inducible protein A family protein	2276610..2279609	Theileria parva strain Muguga	3502484
TpMuguga_01g01109	CDS	TpMuguga_01g01109	NC_007344.1	2280156	2282348	D	uncharacterized protein	join(2280156..2280257,2280347..2280401,2280526..2282348)	Theileria parva strain Muguga	3502485
TpMuguga_01g01110	CDS	Mgrn1	NC_007344.1	2282745	2283704	D	Zinc finger C3HC4 type (RING finger) family protein	join(2282745..2282843,2282885..2282995,2283029..2283135,2283185..2283704)	Theileria parva strain Muguga	3502486
TpMuguga_01g01111	CDS	TpMuguga_01g01111	NC_007344.1	2283792	2286416	R	uncharacterized protein	complement(2283792..2286416)	Theileria parva strain Muguga	3502487
TpMuguga_01g01112	CDS	TpMuguga_01g01112	NC_007344.1	2286762	2287858	D	uncharacterized protein	join(2286762..2286808,2286897..2287688,2287720..2287778,2287857..2287858)	Theileria parva strain Muguga	3503336
TpMuguga_01g02075	CDS	TpMuguga_01g02075	NC_007344.1	2287887	2289074	R	uncharacterized protein	complement(2287887..2289074)	Theileria parva strain Muguga	86047611
TpMuguga_01g01113	CDS	cct8	NC_007344.1	2289588	2291308	D	T-complex protein 1 subunit theta	join(2289588..2290011,2290077..2291308)	Theileria parva strain Muguga	3503337
TpMuguga_01g01114	CDS	TpMuguga_01g01114	NC_007344.1	2291492	2293502	D	Rtr1/RPAP2 family protein	join(2291492..2292165,2292196..2292964,2293011..2293118,2293176..2293502)	Theileria parva strain Muguga	3503338
TpMuguga_01g01115	CDS	TpMuguga_01g01115	NC_007344.1	2294099	2294939	R	uncharacterized protein	complement(join(2294099..2294281,2294337..2294939))	Theileria parva strain Muguga	3503339
TpMuguga_01g01116	CDS	TpMuguga_01g01116	NC_007344.1	2295214	2296139	D	uncharacterized protein	join(2295214..2295495,2295528..2295924,2296013..2296041,2296071..2296139)	Theileria parva strain Muguga	3503340
TpMuguga_01g02805	CDS	TpMuguga_01g02805	NC_007344.1	2296202	2296854	R	uncharacterized protein	complement(join(2296202..2296270,2296302..2296336,2296368..2296465,2296497..2296561,2296594..2296682,2296719..2296854))	Theileria parva strain Muguga	86047658
TpMuguga_01g01117	CDS	TpMuguga_01g01117	NC_007344.1	2297169	2298243	R	uncharacterized protein	complement(join(2297169..2298140,2298172..2298243))	Theileria parva strain Muguga	3503341
TpMuguga_01g01118	CDS	TpMuguga_01g01118	NC_007344.1	2298846	2300798	R	uncharacterized protein	complement(2298846..2300798)	Theileria parva strain Muguga	3503342
TpMuguga_01g02870	CDS	TpMuguga_01g02870	NC_007344.1	2301831	2302468	D	uncharacterized protein	join(2301831..2301897,2301930..2301959,2302026..2302121,2302218..2302468)	Theileria parva strain Muguga	86047666
TpMuguga_01g02215	CDS	rplA	NC_007344.1	2302627	2303787	D	Ribosomal protein L1p/L10e family protein	join(2302627..2303245,2303286..2303622,2303664..2303787)	Theileria parva strain Muguga	3502996
TpMuguga_01g01120	CDS	paa-1	NC_007344.1	2303829	2305333	D	WD domain G-beta repeat protein	join(2303829..2304098,2304170..2304271,2304302..2304431,2304486..2305333)	Theileria parva strain Muguga	3502997
TpMuguga_01g01121	CDS	vps16	NC_007344.1	2305668	2308481	D	Vacuolar protein sorting-associated protein 16	2305668..2308481	Theileria parva strain Muguga	3502998
TpMuguga_01g01122	CDS	ftsH	NC_007344.1	2308595	2311215	R	ATP-dependent metallopeptidase HflB family protein	complement(join(2308595..2309646,2309697..2310206,2310238..2310393,2310513..2311215))	Theileria parva strain Muguga	3502999
TpMuguga_01g02750	CDS	TpMuguga_01g02750	NC_007344.1	2311793	2313159	D	Hydroxyethylthiazole kinase family protein	join(2311793..2312261,2312295..2312356,2312385..2312486,2312516..2312687,2312717..2312800,2312889..2313034,2313064..2313159)	Theileria parva strain Muguga	3503001
TpMuguga_01g01125	CDS	gyrB	NC_007344.1	2313201	2316317	R	DNA gyrase B family protein	complement(join(2313201..2313889,2313920..2314028,2314062..2314255,2314321..2314480,2314517..2314617,2314684..2314762,2314815..2314962,2315017..2315120,2315163..2316317))	Theileria parva strain Muguga	3502674
TpMuguga_01g02365	CDS	TpMuguga_01g02365	NC_007344.1	2316818	2317505	D	uncharacterized protein	join(2316818..2316927,2316960..2316986,2317018..2317091,2317122..2317180,2317210..2317255,2317282..2317341,2317411..2317505)	Theileria parva strain Muguga	86047628
TpMuguga_01g01126	CDS	TpMuguga_01g01126	NC_007344.1	2317547	2319208	R	AP2-coincident C-terminal family protein	complement(2317547..2319208)	Theileria parva strain Muguga	3502675
TpMuguga_01g02660	CDS	TpMuguga_01g02660	NC_007344.1	2320151	2321000	R	Ribosomal protein L23 family protein	complement(join(2320151..2320270,2320303..2320448,2320480..2320928,2320957..2321000))	Theileria parva strain Muguga	3502676
TpMuguga_01g02655	CDS	TpMuguga_01g02655	NC_007344.1	2321039	2322394	R	uncharacterized protein	complement(join(2321039..2321164,2321204..2321323,2321368..2321451,2321519..2322394))	Theileria parva strain Muguga	3502677
TpMuguga_01g01129	CDS	TpMuguga_01g01129	NC_007344.1	2322460	2323039	R	uncharacterized protein	complement(join(2322460..2322593,2322674..2322782,2322971..2323039))	Theileria parva strain Muguga	3502678
TpMuguga_01g01130	CDS	pgs1	NC_007344.1	2323731	2325641	D	PLD-like domain protein	2323731..2325641	Theileria parva strain Muguga	3502679
TpMuguga_01g01131	CDS	TpMuguga_01g01131	NC_007344.1	2325745	2326612	D	uncharacterized protein	join(2325745..2325928,2325967..2326041,2326073..2326143,2326190..2326612)	Theileria parva strain Muguga	3502680
TpMuguga_01g01132	CDS	SRCAP	NC_007344.1	2326953	2332119	D	SNF2 family protein	join(2326953..2329515,2329569..2331100,2331154..2331323,2331428..2331620,2331650..2331838,2331868..2332119)	Theileria parva strain Muguga	3503243
TpMuguga_01g01133	CDS	pyrF	NC_007344.1	2332123	2333376	R	orotidine 5'-phosphate decarboxylase	complement(join(2332123..2332179,2332210..2332271,2332308..2332457,2332591..2332915,2333083..2333376))	Theileria parva strain Muguga	3503244
TpMuguga_01g01134	CDS	TpMuguga_01g01134	NC_007344.1	2333414	2335951	R	Zc3h12a-like Ribonuclease NYN domain protein	complement(2333414..2335951)	Theileria parva strain Muguga	3503245
TpMuguga_01g01135	CDS	TpMuguga_01g01135	NC_007344.1	2336431	2337552	R	Ubiquitin fusion degradation protein UFD1 family protein	complement(join(2336431..2336710,2336767..2336869,2336899..2337274,2337367..2337552))	Theileria parva strain Muguga	3503246
TpMuguga_01g01136	CDS	meigo	NC_007344.1	2337924	2339033	D	UAA transporter family protein	2337924..2339033	Theileria parva strain Muguga	3503247
TpMuguga_01g01137	CDS	DSK2	NC_007344.1	2339191	2340384	R	Ubiquitin family protein	complement(join(2339191..2339198,2339228..2339431,2339462..2339627,2339717..2339877,2339950..2340015,2340046..2340210,2340240..2340384))	Theileria parva strain Muguga	3503248
TpMuguga_01g01138	CDS	PAS1	NC_007344.1	2341056	2342038	R	Peptidyl-prolyl cis-trans isomerase	complement(join(2341056..2341115,2341147..2341221,2341289..2341378,2341430..2341576,2341611..2341680,2341767..2341819,2341901..2341951,2341991..2342038))	Theileria parva strain Muguga	3503507
TpMuguga_01g01139	CDS	TpMuguga_01g01139	NC_007344.1	2342040	2344100	R	uncharacterized protein	complement(join(2342040..2342698,2342843..2343589,2343708..2344065,2344098..2344100))	Theileria parva strain Muguga	3503508
TpMuguga_01g01140	CDS	PTP4A3	NC_007344.1	2345239	2345745	R	Protein tyrosine phosphatase type IVA 3	complement(2345239..2345745)	Theileria parva strain Muguga	3503509
TpMuguga_01g01141	CDS	ACYP1	NC_007344.1	2347069	2347359	D	Acylphosphatase-2	2347069..2347359	Theileria parva strain Muguga	3503510
TpMuguga_01g01142	CDS	TpMuguga_01g01142	NC_007344.1	2347488	2348965	R	mRNA capping enzyme catalytic domain protein	complement(join(2347488..2347653,2347734..2347853,2347943..2348059,2348143..2348235,2348298..2348965))	Theileria parva strain Muguga	3503511
TpMuguga_01g01143	CDS	INP53	NC_007344.1	2349638	2350960	D	Polyphosphatidylinositol phosphatase	join(2349638..2350495,2350595..2350960)	Theileria parva strain Muguga	3503512
TpMuguga_01g01144	CDS	TpMuguga_01g01144	NC_007344.1	2351355	2352056	D	putative integral membrane protein	2351355..2352056	Theileria parva strain Muguga	3503513
TpMuguga_01g01145	CDS	TpMuguga_01g01145	NC_007344.1	2352423	2353210	D	uncharacterized protein	join(2352423..2352498,2352555..2353210)	Theileria parva strain Muguga	3503451
TpMuguga_01g02705	CDS	TpMuguga_01g02705	NC_007344.1	2353405	2353794	R	Transcription factor Pcc1 family protein	complement(join(2353405..2353507,2353539..2353667,2353766..2353794))	Theileria parva strain Muguga	86047651
TpMuguga_01g02700	CDS	TpMuguga_01g02700	NC_007344.1	2353851	2355342	R	Phosphatidylinositol N-acetylglucosaminyltransferase family protein	complement(join(2353851..2353920,2353952..2354011,2354095..2354195,2354227..2354266,2354300..2354328,2354401..2354503,2354533..2354575,2354677..2354746,2354780..2354829,2354859..2354935,2355004..2355127,2355237..2355342))	Theileria parva strain Muguga	3503453
TpMuguga_01g01148	CDS	Ddx28	NC_007344.1	2355618	2358088	R	DEAD/DEAH box helicase family protein	complement(join(2355618..2355707,2355738..2355855,2355969..2356040,2356072..2356164,2356202..2356361,2356457..2356704,2356774..2357209,2357305..2358088))	Theileria parva strain Muguga	3503454
TpMuguga_01g01149	CDS	INP53	NC_007344.1	2358828	2362700	D	Polyphosphatidylinositol phosphatase	join(2358828..2359836,2359985..2361424,2361568..2361771,2361866..2361943,2362063..2362390,2362562..2362700)	Theileria parva strain Muguga	3503455
TpMuguga_01g01150	CDS	Dnpep	NC_007344.1	2362784	2364894	R	Aminopeptidase I zinc metalloprotease (M18) family protein	complement(join(2362784..2362837,2362875..2363389,2363528..2363700,2363788..2363876,2363995..2364104,2364141..2364231,2364353..2364465,2364544..2364620,2364743..2364894))	Theileria parva strain Muguga	3503456
TpMuguga_01g01151	CDS	cnrB	NC_007344.1	2365035	2367927	D	Cleft lip and palate transmembrane protein 1 (CLPTM1) family protein	join(2365035..2365089,2365168..2365310,2365391..2365618,2365730..2366597,2366678..2366754,2366864..2367022,2367090..2367164,2367244..2367340,2367441..2367525,2367609..2367927)	Theileria parva strain Muguga	3503275
TpMuguga_01g01152	CDS	Dnajb14	NC_007344.1	2368285	2369698	D	DnaJ domain protein	join(2368285..2368362,2368395..2368545,2368634..2368773,2368903..2369174,2369287..2369698)	Theileria parva strain Muguga	3503276
TpMuguga_01g01153	CDS	TpMuguga_01g01153	NC_007344.1	2369772	2370622	R	uncharacterized protein	complement(join(2369772..2369826,2369887..2370033,2370128..2370182,2370243..2370326,2370423..2370568,2370612..2370622))	Theileria parva strain Muguga	3503277
TpMuguga_01g02415	CDS	TpMuguga_01g02415	NC_007344.1	2370714	2372876	R	RAP domain protein	complement(join(2370714..2370830,2370901..2371119,2371200..2371270,2371302..2371410,2371479..2371550,2371612..2371783,2371888..2371989,2372021..2372106,2372164..2372240,2372357..2372430,2372461..2372876))	Theileria parva strain Muguga	3503278
TpMuguga_01g01156	CDS	SODB	NC_007344.1	2373012	2374075	R	Iron/manganese superoxide dismutase	complement(join(2373012..2373079,2373222..2373313,2373457..2373733,2373830..2373871,2373955..2374075))	Theileria parva strain Muguga	3503168
TpMuguga_01g01157	CDS	DDHD1	NC_007344.1	2374490	2376757	D	DDHD domain protein	join(2374490..2374749,2374815..2374974,2375044..2375145,2375233..2375337,2375398..2375586,2375667..2375796,2375871..2375900,2375931..2376124,2376216..2376482,2376617..2376757)	Theileria parva strain Muguga	3503169
TpMuguga_01g01158	CDS	TpMuguga_01g01158	NC_007344.1	2376860	2380062	D	ATPase family associated with various cellular activities (AAA) family protein	join(2376860..2376968,2377024..2377159,2377262..2377698,2377806..2378051,2378159..2378277,2378369..2378527,2378599..2378851,2378947..2379015,2379100..2379293,2379400..2379472,2379563..2379695,2379834..2380062)	Theileria parva strain Muguga	3503170
TpMuguga_01g01159	CDS	TpMuguga_01g01159	NC_007344.1	2380178	2381792	R	uncharacterized protein	complement(join(2380178..2381526,2381633..2381792))	Theileria parva strain Muguga	3503171
TpMuguga_01g01160	CDS	TpMuguga_01g01160	NC_007344.1	2382229	2383936	R	uncharacterized protein	complement(join(2382229..2383064,2383141..2383936))	Theileria parva strain Muguga	3502960
TpMuguga_01g01161	CDS	TpMuguga_01g01161	NC_007344.1	2384578	2390564	D	putative integral membrane protein	join(2384578..2384683,2384767..2386911,2386975..2390564)	Theileria parva strain Muguga	3502961
TpMuguga_01g01162	CDS	TpMuguga_01g01162	NC_007344.1	2390760	2392134	R	Glutamine amidotransferase class-I family protein	complement(join(2390760..2390938,2391048..2391299,2391333..2391397,2391456..2391571,2391674..2391813,2391899..2392070,2392102..2392134))	Theileria parva strain Muguga	3502962
TpMuguga_01g01163	CDS	TpMuguga_01g01163	NC_007344.1	2392470	2394604	R	Major Facilitator Superfamily protein	complement(join(2392470..2392555,2392719..2392944,2393014..2393216,2393337..2393532,2393654..2394058,2394245..2394604))	Theileria parva strain Muguga	3502963
TpMuguga_01g01164	CDS	TpMuguga_01g01164	NC_007344.1	2395551	2396567	R	uncharacterized protein	complement(2395551..2396567)	Theileria parva strain Muguga	3502964
TpMuguga_01g01165	CDS	TpMuguga_01g01165	NC_007344.1	2397012	2399659	D	Helicase conserved domain protein	join(2397012..2397425,2397522..2397806,2397905..2398036,2398100..2398177,2398236..2398403,2398483..2398919,2399065..2399428,2399465..2399659)	Theileria parva strain Muguga	3502965
TpMuguga_01g01166	CDS	bbp	NC_007344.1	2399740	2401452	R	KH domain protein	complement(join(2399740..2400138,2400216..2400332,2400432..2400845,2400928..2401452))	Theileria parva strain Muguga	3502909
TpMuguga_01g01167	CDS	Eif2ak3	NC_007344.1	2402423	2407070	D	Protein kinase domain protein	join(2402423..2405766,2405914..2406195,2406361..2406613,2406738..2407070)	Theileria parva strain Muguga	3502910
TpMuguga_01g01168	CDS	TpMuguga_01g01168	NC_007344.1	2407521	2408175	R	U1 zinc finger family protein	complement(join(2407521..2407696,2407765..2407830,2407861..2407926,2408058..2408175))	Theileria parva strain Muguga	3502911
TpMuguga_01g01169	CDS	TpMuguga_01g01169	NC_007344.1	2408439	2408693	D	putative integral membrane protein	2408439..2408693	Theileria parva strain Muguga	3502912
TpMuguga_01g01170	CDS	TpMuguga_01g01170	NC_007344.1	2409321	2410334	D	uncharacterized protein	2409321..2410334	Theileria parva strain Muguga	3502913
TpMuguga_01g02785	CDS	EPT1	NC_007344.1	2410510	2412361	R	CDP-alcohol phosphatidyltransferase family protein	complement(join(2410510..2410928,2411035..2411105,2411176..2411333,2411450..2411566,2411653..2411811,2411976..2412125,2412221..2412361))	Theileria parva strain Muguga	3502914
TpMuguga_01g01173	CDS	SWC4	NC_007344.1	2412846	2414991	D	SWR1-complex protein 4	join(2412846..2412905,2413001..2413339,2413487..2414142,2414211..2414991)	Theileria parva strain Muguga	3502688
TpMuguga_01g01174	CDS	TpMuguga_01g01174	NC_007344.1	2415280	2416154	D	uncharacterized protein	join(2415280..2415873,2415987..2416154)	Theileria parva strain Muguga	3502689
TpMuguga_01g01175	CDS	TpMuguga_01g01175	NC_007344.1	2416482	2433428	R	HECT-domain (ubiquitin-transferase) family protein	complement(join(2416482..2416661,2416823..2423998,2424117..2433428))	Theileria parva strain Muguga	3502690
TpMuguga_01g02065	CDS	TpMuguga_01g02065	NC_007344.1	2434008	2434625	R	Acetyltransferase (GNAT) family protein	complement(2434008..2434625)	Theileria parva strain Muguga	86047610
TpMuguga_01g02085	CDS	TpMuguga_01g02085	NC_007344.1	2435082	2435928	D	putative integral membrane protein	join(2435082..2435355,2435386..2435646,2435741..2435788,2435819..2435928)	Theileria parva strain Muguga	3502546
TpMuguga_01g02090	CDS	TpMuguga_01g02090	NC_007344.1	2435933	2438150	D	uncharacterized protein	join(2435933..2437322,2437487..2437662,2437805..2437859,2437892..2437945,2438023..2438150)	Theileria parva strain Muguga	3502547
TpMuguga_01g01180	CDS	TpMuguga_01g01180	NC_007344.1	2438251	2439707	R	Oxidoreductase NAD-binding domain protein	complement(join(2438251..2438430,2438524..2439071,2439194..2439351,2439385..2439642,2439673..2439707))	Theileria parva strain Muguga	3502548
TpMuguga_01g01181	CDS	TpMuguga_01g01181	NC_007344.1	2439936	2440645	D	uncharacterized protein	join(2439936..2440080,2440209..2440645)	Theileria parva strain Muguga	3502549
TpMuguga_01g01182	CDS	TpMuguga_01g01182	NC_007344.1	2441107	2442459	D	Tp24; lactate/malate dehydrogenase	join(2441107..2441227,2441344..2441471,2441743..2442459)	Theileria parva strain Muguga	3502550
TpMuguga_01g01183	CDS	PRPF18	NC_007344.1	2442702	2444603	D	Prp18 domain protein	join(2442702..2442750,2442792..2442916,2442951..2443011,2443146..2443227,2443257..2443340,2443372..2443409,2443711..2443771,2443862..2444133,2444392..2444603)	Theileria parva strain Muguga	3502551
TpMuguga_01g01184	CDS	Naa15	NC_007344.1	2444899	2448259	D	NMDA receptor-regulated protein 1 family protein	join(2444899..2444985,2445173..2448259)	Theileria parva strain Muguga	3502470
TpMuguga_01g02645	CDS	TpMuguga_01g02645	NC_007344.1	2449194	2451764	D	Alpha/beta hydrolase family protein	join(2449194..2451203,2451337..2451489,2451615..2451764)	Theileria parva strain Muguga	3502472
TpMuguga_01g01187	CDS	TpMuguga_01g01187	NC_007344.1	2452803	2455160	D	uncharacterized protein	2452803..2455160	Theileria parva strain Muguga	3502473
TpMuguga_01g01188	CDS	infB	NC_007344.1	2455454	2457973	D	Elongation factor Tu GTP binding domain protein	join(2455454..2455588,2455617..2455732,2455786..2455888,2455918..2455999,2456226..2457184,2457216..2457355,2457385..2457973)	Theileria parva strain Muguga	3502474
TpMuguga_01g01189	CDS	TpMuguga_01g01189	NC_007344.1	2458540	2459082	D	Cyclin-dependent kinase regulatory subunit family protein	join(2458540..2458590,2458633..2458799,2458859..2459035,2459070..2459082)	Theileria parva strain Muguga	3502475
TpMuguga_01g01190	CDS	TpMuguga_01g01190	NC_007344.1	2459206	2460368	R	Pre-mRNA splicing factor family protein	complement(join(2459206..2459935,2459967..2460184,2460276..2460368))	Theileria parva strain Muguga	3502476
TpMuguga_01g01191	CDS	TpMuguga_01g01191	NC_007344.1	2460489	2463599	D	Regulator of chromosome condensation (RCC1) repeat family protein	join(2460489..2460653,2460737..2460803,2460841..2460936,2460969..2461021,2461228..2461270,2461299..2461466,2461492..2461613,2461851..2461939,2461995..2462144,2462229..2462647,2463487..2463599)	Theileria parva strain Muguga	3502519
TpMuguga_01g01192	CDS	lplA	NC_007344.1	2463967	2465823	D	lipoyltransferase and lipoate-protein ligase family protein	join(2463967..2464248,2464558..2464657,2464759..2464811,2464844..2464892,2464995..2465065,2465164..2465238,2465268..2465324,2465361..2465432,2465462..2465729,2465762..2465823)	Theileria parva strain Muguga	3502521
TpMuguga_01g01193	CDS	TpMuguga_01g01193	NC_007344.1	2466484	2467742	R	pinin/SDK/memA/ protein conserved region family protein	complement(join(2466484..2466663,2466695..2466769,2466857..2466949,2467076..2467231,2467501..2467574,2467640..2467742))	Theileria parva strain Muguga	3502522
TpMuguga_01g01194	CDS	TpMuguga_01g01194	NC_007344.1	2467832	2469696	R	Tubulin binding cofactor C family protein	complement(join(2467832..2468029,2468059..2468122,2468369..2468509,2468790..2468863,2468894..2468945,2469144..2469394,2469514..2469696))	Theileria parva strain Muguga	3502523
TpMuguga_01g01195	CDS	TpMuguga_01g01195	NC_007344.1	2469836	2470953	D	emp24/gp25L/p24 family/GOLD family protein	join(2469836..2469987,2470068..2470194,2470415..2470585,2470768..2470953)	Theileria parva strain Muguga	3502453
TpMuguga_01g01196	CDS	TpMuguga_01g01196	NC_007344.1	2471150	2472899	R	Ribonucleotide reductase small chain family protein	complement(join(2471150..2471340,2471427..2471769,2472091..2472262,2472482..2472618,2472692..2472724,2472804..2472899))	Theileria parva strain Muguga	3502454
TpMuguga_01g01197	CDS	TpMuguga_01g01197	NC_007344.1	2473173	2473991	D	uncharacterized protein	2473173..2473991	Theileria parva strain Muguga	3502455
TpMuguga_01g01198	CDS	TpMuguga_01g01198	NC_007344.1	2474585	2475508	D	uncharacterized protein	2474585..2475508	Theileria parva strain Muguga	3502456
TpMuguga_01g01199	CDS	sph	NC_007344.1	2476367	2477869	D	Endonuclease/Exonuclease/phosphatase family protein	join(2476367..2476616,2476979..2477467,2477664..2477869)	Theileria parva strain Muguga	3502457
TpMuguga_01g01200	CDS	Pde7b	NC_007344.1	2478944	2483255	R	3'5'-cyclic nucleotide phosphodiesterase family protein	complement(join(2478944..2479155,2479247..2479551,2479874..2480510,2480770..2481209,2481323..2481421,2481651..2481820,2482043..2482188,2482466..2482702,2482943..2483255))	Theileria parva strain Muguga	3502458
TpMuguga_01g01201	CDS	CELF1	NC_007344.1	2484448	2485691	D	or RNP domain; RBD; RRM; uncharacterized protein	join(2484448..2484510,2484631..2484792,2485110..2485691)	Theileria parva strain Muguga	3502376
TpMuguga_01g01202	CDS	CWC22	NC_007344.1	2486788	2488578	R	MIF4G domain protein	complement(2486788..2488578)	Theileria parva strain Muguga	3502377
TpMuguga_01g01203	CDS	TpMuguga_01g01203	NC_007344.1	2488846	2489306	R	Ribosomal protein S8 family protein	complement(join(2488846..2489052,2489124..2489306))	Theileria parva strain Muguga	3502378
TpMuguga_01g01204	CDS	YPT31	NC_007344.1	2490200	2490838	D	uncharacterized protein	2490200..2490838	Theileria parva strain Muguga	3502379
TpMuguga_01g02320	CDS	TpMuguga_01g02320	NC_007344.1	2491350	2492707	D	PPPDE putative peptidase domain protein	join(2491350..2491536,2491613..2491693,2491771..2492251,2492529..2492661,2492687..2492707)	Theileria parva strain Muguga	3502380
TpMuguga_01g01207	CDS	srp2	NC_007344.1	2492953	2495124	R	or RNP domain; RBD; RRM; RNA recognition motif family protein	complement(join(2492953..2493058,2493503..2495124))	Theileria parva strain Muguga	3502382
TpMuguga_01g01208	CDS	TpMuguga_01g01208	NC_007344.1	2495431	2496587	R	uncharacterized protein	complement(join(2495431..2495493,2495927..2496181,2496303..2496587))	Theileria parva strain Muguga	3502383
TpMuguga_01g01209	CDS	TpMuguga_01g01209	NC_007344.1	2496729	2497871	R	putative integral membrane protein	complement(join(2496729..2497073,2497185..2497288,2497417..2497659,2497790..2497871))	Theileria parva strain Muguga	3502384
TpMuguga_01g01210	CDS	TpMuguga_01g01210	NC_007344.1	2498042	2499463	D	Mitochondrial carrier family protein	join(2498042..2498282,2498394..2498690,2498903..2499076,2499119..2499215,2499245..2499308,2499341..2499463)	Theileria parva strain Muguga	3502385
TpMuguga_01g01211	CDS	TpMuguga_01g01211	NC_007344.1	2499528	2500733	D	uncharacterized protein	join(2499528..2499728,2499803..2499907,2500011..2500098,2500201..2500298,2500336..2500483,2500525..2500618,2500649..2500733)	Theileria parva strain Muguga	3502386
TpMuguga_01g01212	CDS	metG	NC_007344.1	2500770	2502461	R	tRNA synthetases class I (M) family protein	complement(2500770..2502461)	Theileria parva strain Muguga	3502387
TpMuguga_01g01213	CDS	TpMuguga_01g01213	NC_007344.1	2502626	2504859	D	uncharacterized protein	join(2502626..2503348,2503414..2503662,2503750..2503851,2503901..2504179,2504230..2504324,2504359..2504459,2504591..2504859)	Theileria parva strain Muguga	3502388
TpMuguga_01g01214	CDS	TpMuguga_01g01214	NC_007344.1	2505117	2506145	D	Ring finger domain protein	join(2505117..2505263,2505296..2505839,2505871..2506145)	Theileria parva strain Muguga	3502389
TpMuguga_01g01215	CDS	TpMuguga_01g01215	NC_007344.1	2506461	2506946	R	uncharacterized protein	complement(join(2506461..2506568,2506601..2506678,2506711..2506744,2506813..2506946))	Theileria parva strain Muguga	3502391
TpMuguga_01g01216	CDS	TpMuguga_01g01216	NC_007344.1	2507623	2508520	D	Cyclin domain protein	join(2507623..2507694,2507728..2507832,2507868..2508011,2508041..2508234,2508266..2508362,2508410..2508520)	Theileria parva strain Muguga	3502394
TpMuguga_01g01217	CDS	TpMuguga_01g01217	NC_007344.1	2508676	2509224	R	uncharacterized protein	complement(2508676..2509224)	Theileria parva strain Muguga	3502395
TpMuguga_01g01218	CDS	TpMuguga_01g01218	NC_007344.1	2509882	2510379	R	uncharacterized protein	complement(2509882..2510379)	Theileria parva strain Muguga	3502396
TpMuguga_01g01219	CDS	psd	NC_007344.1	2510964	2511641	D	Phosphatidylserine decarboxylase	2510964..2511641	Theileria parva strain Muguga	3502397
TpMuguga_01g01220	CDS	TpMuguga_01g01220	NC_007344.1	2511837	2513057	R	putative integral membrane protein	complement(2511837..2513057)	Theileria parva strain Muguga	3502398
TpMuguga_01g01221	CDS	TpMuguga_01g01221	NC_007344.1	2514060	2519510	D	uncharacterized protein	2514060..2519510	Theileria parva strain Muguga	3502399
TpMuguga_01g01222	CDS	TpMuguga_01g01222	NC_007344.1	2519570	2522182	D	uncharacterized protein	2519570..2522182	Theileria parva strain Muguga	3502400
TpMuguga_01g01223	CDS	TpMuguga_01g01223	NC_007344.1	2524394	2528593	D	uncharacterized protein	2524394..2528593	Theileria parva strain Muguga	3502401
TpMuguga_01g01224	CDS	TpMuguga_01g01224	NC_007344.1	2528768	2529823	D	uncharacterized protein	2528768..2529823	Theileria parva strain Muguga	3502402
TpMuguga_01g01225	CDS	TpMuguga_01g01225	NC_007344.1	2531301	2532696	D	Tp25; SVSP family protein	join(2531301..2532601,2532696)	Theileria parva strain Muguga	3502403
TpMuguga_01g01226	CDS	TpMuguga_01g01226	NC_007344.1	2532909	2533997	D	SVSP family protein	2532909..2533997	Theileria parva strain Muguga	3502404
TpMuguga_01g01227	CDS	TpMuguga_01g01227	NC_007344.1	2534348	2536969	D	SVSP family protein	2534348..2536969	Theileria parva strain Muguga	3502405
TpMuguga_02g00001	CDS	TpMuguga_02g00001	NC_007345.1	3020	4516	R	uncharacterized protein	complement(3020..4516)	Theileria parva strain Muguga	3501606
TpMuguga_02g00002	CDS	TpMuguga_02g00002	NC_007345.1	4946	7069	R	uncharacterized protein	complement(4946..7069)	Theileria parva strain Muguga	3501607
TpMuguga_02g00003	CDS	TpMuguga_02g00003	NC_007345.1	7942	8547	R	uncharacterized protein	complement(7942..8547)	Theileria parva strain Muguga	3501608
TpMuguga_02g02590	CDS	TpMuguga_02g02590	NC_007345.1	8566	9104	D	uncharacterized protein	join(8566..8672,8984..9104)	Theileria parva strain Muguga	86047732
TpMuguga_02g00004	CDS	TpMuguga_02g00004	NC_007345.1	8970	10745	R	SVSP family protein	complement(8970..10745)	Theileria parva strain Muguga	3501579
TpMuguga_02g00005	CDS	TpMuguga_02g00005	NC_007345.1	10973	12685	R	SVSP family protein	complement(10973..12685)	Theileria parva strain Muguga	3501580
TpMuguga_02g00006	CDS	TpMuguga_02g00006	NC_007345.1	12913	14700	R	SVSP family protein	complement(12913..14700)	Theileria parva strain Muguga	3501581
TpMuguga_02g00007	CDS	TpMuguga_02g00007	NC_007345.1	14928	16475	R	SVSP family protein	complement(14928..16475)	Theileria parva strain Muguga	3501582
TpMuguga_02g00008	CDS	TpMuguga_02g00008	NC_007345.1	16689	17255	R	uncharacterized protein	complement(16689..17255)	Theileria parva strain Muguga	3501583
TpMuguga_02g00009	CDS	TpMuguga_02g00009	NC_007345.1	17295	18305	R	SVSP family protein	complement(17295..18305)	Theileria parva strain Muguga	3501584
TpMuguga_02g00010	CDS	TpMuguga_02g00010	NC_007345.1	18599	19951	R	Tp26; SVSP family protein	complement(18599..19951)	Theileria parva strain Muguga	3501585
TpMuguga_02g00011	CDS	TpMuguga_02g00011	NC_007345.1	20254	21726	R	uncharacterized protein	complement(20254..21726)	Theileria parva strain Muguga	3501586
TpMuguga_02g00012	CDS	TpMuguga_02g00012	NC_007345.1	22167	24542	R	uncharacterized protein	complement(22167..24542)	Theileria parva strain Muguga	3501776
TpMuguga_02g00013	CDS	TpMuguga_02g00013	NC_007345.1	25488	26825	R	uncharacterized protein	complement(25488..26825)	Theileria parva strain Muguga	3501777
TpMuguga_02g02555	CDS	TpMuguga_02g02555	NC_007345.1	27194	27406	R	SVSP family protein	complement(27194..27406)	Theileria parva strain Muguga	86047730
TpMuguga_02g02055	CDS	TpMuguga_02g02055	NC_007345.1	29183	32185	R	putative integral membrane protein	complement(join(29183..30818,30864..32185))	Theileria parva strain Muguga	3501779
TpMuguga_02g00016	CDS	abcC6	NC_007345.1	33352	37947	D	ABC transporter family protein	33352..37947	Theileria parva strain Muguga	3501780
TpMuguga_02g00017	CDS	abcC6	NC_007345.1	38951	43549	D	ABC transporter family protein	38951..43549	Theileria parva strain Muguga	3501781
TpMuguga_02g00018	CDS	TpMuguga_02g00018	NC_007345.1	44323	45981	R	uncharacterized protein	complement(44323..45981)	Theileria parva strain Muguga	3501782
TpMuguga_02g00019	CDS	TpMuguga_02g00019	NC_007345.1	47435	52807	D	uncharacterized protein	47435..52807	Theileria parva strain Muguga	3501783
TpMuguga_02g00020	CDS	TpMuguga_02g00020	NC_007345.1	52910	55213	R	uncharacterized protein	complement(52910..55213)	Theileria parva strain Muguga	3501784
TpMuguga_02g00021	CDS	TpMuguga_02g00021	NC_007345.1	55493	56683	R	SNF5 / SMARCB1 / INI1 family protein	complement(join(55493..55705,55743..56338,56415..56552,56596..56683))	Theileria parva strain Muguga	3502204
TpMuguga_02g00022	CDS	TpMuguga_02g00022	NC_007345.1	56915	58300	D	uncharacterized protein	join(56915..56978,57104..57223,57373..57740,57772..57927,57993..58125,58197..58300)	Theileria parva strain Muguga	3502205
TpMuguga_02g02250	CDS	TpMuguga_02g02250	NC_007345.1	58656	63275	D	uncharacterized protein	join(58656..60502,60629..60722,60798..60895,61010..61532,61675..62024,62202..62298,62411..62754,62847..62970,63042..63275)	Theileria parva strain Muguga	3502207
TpMuguga_02g00025	CDS	UPL6	NC_007345.1	63421	67194	D	HECT-domain (ubiquitin-transferase) family protein	join(63421..65178,65368..66783,66946..67194)	Theileria parva strain Muguga	3502208
TpMuguga_02g02325	CDS	TpMuguga_02g02325	NC_007345.1	67480	67881	R	uncharacterized protein	complement(67480..67881)	Theileria parva strain Muguga	86047708
TpMuguga_02g00026	CDS	TpMuguga_02g00026	NC_007345.1	68368	69679	R	uncharacterized protein	complement(join(68368..68444,68477..69244,69382..69679))	Theileria parva strain Muguga	3502209
TpMuguga_02g02595	CDS	TpMuguga_02g02595	NC_007345.1	69828	71792	D	50S ribosome-binding GTPase family protein	join(69828..69970,70083..70329,70442..70648,70782..70827,70858..70975,71100..71271,71402..71571,71741..71792)	Theileria parva strain Muguga	3501672
TpMuguga_02g02355	CDS	TpMuguga_02g02355	NC_007345.1	71848	76905	D	uncharacterized protein	join(71848..72588,72844..76905)	Theileria parva strain Muguga	3501674
TpMuguga_02g00030	CDS	TpMuguga_02g00030	NC_007345.1	77014	78111	R	uncharacterized protein	complement(77014..78111)	Theileria parva strain Muguga	3501675
TpMuguga_02g00031	CDS	TpMuguga_02g00031	NC_007345.1	78429	80359	R	uncharacterized protein	complement(join(78429..78505,79573..80359))	Theileria parva strain Muguga	3501676
TpMuguga_02g00032	CDS	TpMuguga_02g00032	NC_007345.1	80536	82473	R	uncharacterized protein	complement(80536..82473)	Theileria parva strain Muguga	3501677
TpMuguga_02g00033	CDS	TpMuguga_02g00033	NC_007345.1	82951	86481	R	uncharacterized protein	complement(join(82951..83098,83216..83320,83487..83609,83788..83921,84052..84235,84377..84511,84776..85688,85797..86481))	Theileria parva strain Muguga	3501678
TpMuguga_02g00034	CDS	atp6v1c1a	NC_007345.1	86923	88406	D	V-ATPase subunit C family protein	join(86923..87623,87796..88190,88327..88406)	Theileria parva strain Muguga	3501614
TpMuguga_02g00035	CDS	trx1	NC_007345.1	88575	89246	D	Thioredoxin-1	join(88575..88905,89194..89246)	Theileria parva strain Muguga	3501615
TpMuguga_02g00036	CDS	TpMuguga_02g00036	NC_007345.1	89430	90295	D	Yippee zinc-binding/DNA-binding /Mis18 centromere assembly family protein	join(89430..89476,89546..89638,89828..89928,90109..90176,90224..90295)	Theileria parva strain Muguga	3501616
TpMuguga_02g00037	CDS	TpMuguga_02g00037	NC_007345.1	90563	92299	R	uncharacterized protein	complement(90563..92299)	Theileria parva strain Muguga	3501617
TpMuguga_02g00038	CDS	TpMuguga_02g00038	NC_007345.1	93079	94722	R	uncharacterized protein	complement(93079..94722)	Theileria parva strain Muguga	3501618
TpMuguga_02g00039	CDS	HDAC1	NC_007345.1	95360	96703	R	Histone deacetylase Rpd3	complement(95360..96703)	Theileria parva strain Muguga	3501619
TpMuguga_02g00040	CDS	Pars2	NC_007345.1	97544	99470	D	tRNA synthetase class II core domain family protein	join(97544..97595,97681..97728,97886..98571,98785..99016,99103..99470)	Theileria parva strain Muguga	3501620
TpMuguga_02g02485	CDS	TpMuguga_02g02485	NC_007345.1	99868	101485	D	Histone RNA hairpin-binding protein RNA-binding domain protein	join(99868..99910,100194..101143,101330..101485)	Theileria parva strain Muguga	3502081
TpMuguga_02g02060	CDS	PPX1	NC_007345.1	101868	102878	D	Serine/threonine-protein phosphatase 4 catalytic subunit	join(101868..102008,102105..102878)	Theileria parva strain Muguga	3502082
TpMuguga_02g00043	CDS	TpMuguga_02g00043	NC_007345.1	103340	105091	D	uncharacterized protein	103340..105091	Theileria parva strain Muguga	3502083
TpMuguga_02g00044	CDS	CSE4	NC_007345.1	105500	107123	R	Core histone H2A/H2B/H3/H4 family protein	complement(join(105500..106596,106768..106925,107122..107123))	Theileria parva strain Muguga	3502084
TpMuguga_02g00045	CDS	TpMuguga_02g00045	NC_007345.1	107522	108715	D	Cytochrome c oxidase subunit Vb family protein	join(107522..107949,108099..108382,108615..108715)	Theileria parva strain Muguga	3502085
TpMuguga_02g00046	CDS	aatB	NC_007345.1	109146	110788	D	Aminotransferase class I and II family protein	join(109146..109294,109459..109702,109797..110216,110363..110788)	Theileria parva strain Muguga	3502086
TpMuguga_02g00047	CDS	TpMuguga_02g00047	NC_007345.1	111162	112066	D	uncharacterized protein	join(111162..111660,111735..112066)	Theileria parva strain Muguga	3502087
TpMuguga_02g00048	CDS	cypB	NC_007345.1	112332	113197	R	Peptidyl-prolyl cis-trans isomerase B	complement(join(112332..112522,112601..112718,112916..113197))	Theileria parva strain Muguga	3501804
TpMuguga_02g00049	CDS	TpMuguga_02g00049	NC_007345.1	113707	115497	R	uncharacterized protein	complement(113707..115497)	Theileria parva strain Muguga	3501805
TpMuguga_02g00050	CDS	NTF2	NC_007345.1	116182	117043	D	Nuclear transport factor 2	join(116182..116264,116423..116598,116766..116846,117009..117043)	Theileria parva strain Muguga	3501806
TpMuguga_02g02265	CDS	RON4	NC_007345.1	117381	122890	D	Rhoptry neck protein 4	join(117381..117555,117648..117680,117868..118161,118288..119364,119505..120380,120573..121015,121133..122890)	Theileria parva strain Muguga	3501807
TpMuguga_02g00053	CDS	TpMuguga_02g00053	NC_007345.1	123080	124924	R	uncharacterized protein	complement(123080..124924)	Theileria parva strain Muguga	3501809
TpMuguga_02g00054	CDS	FAB1D	NC_007345.1	125170	126689	R	Phosphatidylinositol-4-phosphate 5-Kinase family protein	complement(join(125170..125704,125767..126689))	Theileria parva strain Muguga	3501810
TpMuguga_02g00055	CDS	TpMuguga_02g00055	NC_007345.1	127487	130405	R	uncharacterized protein	complement(join(127487..129630,129799..130405))	Theileria parva strain Muguga	3502032
TpMuguga_02g00056	CDS	TpMuguga_02g00056	NC_007345.1	130662	132042	D	Actin family protein	join(130662..130770,130889..131030,131151..132042)	Theileria parva strain Muguga	3502033
TpMuguga_02g00057	CDS	TpMuguga_02g00057	NC_007345.1	132845	135114	D	Glycylpeptide N-tetradecanoyltransferase	join(132845..132961,132992..133159,133305..133352,133385..133456,133535..133684,133739..133912,133975..134061,134174..134248,134353..134423,134524..134621,134651..134865,134982..135047,135079..135114)	Theileria parva strain Muguga	3502034
TpMuguga_02g00058	CDS	TpMuguga_02g00058	NC_007345.1	135309	136421	R	Deoxyhypusine synthase family protein	complement(135309..136421)	Theileria parva strain Muguga	3502035
TpMuguga_02g00059	CDS	SPATA5	NC_007345.1	137004	139963	D	ATPase family associated with various cellular activities (AAA) family protein	join(137004..138039,138142..139059,139095..139190,139276..139731,139836..139963)	Theileria parva strain Muguga	3502036
TpMuguga_02g00060	CDS	TpMuguga_02g00060	NC_007345.1	140109	142382	D	uncharacterized protein	join(140109..141494,141568..141769,141800..141883,141965..142035,142111..142179,142209..142382)	Theileria parva strain Muguga	3501540
TpMuguga_02g00061	CDS	PPA1	NC_007345.1	142452	143526	R	Inorganic pyrophosphatase family protein	complement(join(142452..143200,143310..143526))	Theileria parva strain Muguga	3501541
TpMuguga_02g00062	CDS	TpMuguga_02g00062	NC_007345.1	144076	146796	D	uncharacterized protein	join(144076..146616,146686..146796)	Theileria parva strain Muguga	3501542
TpMuguga_02g00063	CDS	TpMuguga_02g00063	NC_007345.1	147176	148761	D	Nuf2 family protein	join(147176..147209,147245..147458,147630..148761)	Theileria parva strain Muguga	3501543
TpMuguga_02g00064	CDS	Rps15a	NC_007345.1	148926	149318	R	40S ribosomal protein S15a	complement(148926..149318)	Theileria parva strain Muguga	3501544
TpMuguga_02g00065	CDS	TpMuguga_02g00065	NC_007345.1	149735	150553	R	putative integral membrane protein	complement(149735..150553)	Theileria parva strain Muguga	3501545
TpMuguga_02g00066	CDS	REEP5	NC_007345.1	151203	152059	D	TB2/DP1 HVA22 family protein	join(151203..151811,151883..152059)	Theileria parva strain Muguga	3501546
TpMuguga_02g00067	CDS	TpMuguga_02g00067	NC_007345.1	152230	153019	R	or RNP domain; RBD; RRM; uncharacterized protein	complement(join(152230..152448,152561..152629,152698..152924,152968..153019))	Theileria parva strain Muguga	3501547
TpMuguga_02g00068	CDS	TpMuguga_02g00068	NC_007345.1	153492	154526	D	uncharacterized protein	153492..154526	Theileria parva strain Muguga	3501500
TpMuguga_02g02645	CDS	TpMuguga_02g02645	NC_007345.1	154577	158241	R	uncharacterized protein	complement(join(154577..154870,155023..158241))	Theileria parva strain Muguga	3501501
TpMuguga_02g00071	CDS	TpMuguga_02g00071	NC_007345.1	159898	160897	D	uncharacterized protein	join(159898..160689,160772..160897)	Theileria parva strain Muguga	3501503
TpMuguga_02g02165	CDS	TpMuguga_02g02165	NC_007345.1	161096	163422	D	uncharacterized protein	join(161096..161114,161170..162341,162385..162679,162709..162769,162859..162958,163042..163137,163170..163255,163347..163422)	Theileria parva strain Muguga	3501504
TpMuguga_02g02465	CDS	DXR	NC_007345.1	163403	165043	D	1-deoxy-D-xylulose 5-phosphate reductoisomerase	join(163403..163466,163577..163607,163646..163825,163860..164844,164975..165043)	Theileria parva strain Muguga	3501505
TpMuguga_02g00074	CDS	TpMuguga_02g00074	NC_007345.1	165124	166763	R	uncharacterized protein	complement(join(165124..165840,165874..165966,166039..166227,166315..166450,166489..166763))	Theileria parva strain Muguga	3501817
TpMuguga_02g00075	CDS	vps18	NC_007345.1	167028	170363	D	Pep3/Vps18/deep orange family protein	join(167028..167241,167281..167724,167779..168188,168245..168404,168461..169734,169792..169961,170033..170363)	Theileria parva strain Muguga	3501818
TpMuguga_02g00076	CDS	TpMuguga_02g00076	NC_007345.1	170448	171602	R	uncharacterized protein	complement(join(170448..170666,170728..170968,171044..171105,171143..171252,171284..171415,171449..171602))	Theileria parva strain Muguga	3501819
TpMuguga_02g00077	CDS	SRD2	NC_007345.1	171844	173330	D	snRNA-activating protein of 50kDa MW C terminal family protein	join(171844..172788,172830..173330)	Theileria parva strain Muguga	3501820
TpMuguga_02g00078	CDS	RPL27	NC_007345.1	173779	174333	D	60S ribosomal protein L27	join(173779..174029,174108..174221,174252..174333)	Theileria parva strain Muguga	3501821
TpMuguga_02g02495	CDS	TpMuguga_02g02495	NC_007345.1	174451	176731	R	ENTH domain protein	complement(join(174451..175334,175492..176731))	Theileria parva strain Muguga	86047726
TpMuguga_02g00079	CDS	TpMuguga_02g00079	NC_007345.1	177054	178015	R	uncharacterized protein	complement(join(177054..177265,177295..177340,177400..177728,177847..178015))	Theileria parva strain Muguga	3501822
TpMuguga_02g00080	CDS	RPL29A	NC_007345.1	178822	179172	D	60S ribosomal protein L29-1	join(178822..178857,178950..179015,179086..179172)	Theileria parva strain Muguga	3502248
TpMuguga_02g00081	CDS	rrp4	NC_007345.1	179695	180664	D	Exosome complex exonuclease RRP4 N-terminal region family protein	join(179695..179823,179940..180200,180233..180386,180417..180664)	Theileria parva strain Muguga	3502250
TpMuguga_02g00082	CDS	RPL5	NC_007345.1	180945	182195	R	60S ribosomal protein L5	complement(join(180945..180971,181037..181857,182123..182195))	Theileria parva strain Muguga	3502251
TpMuguga_02g00083	CDS	RPL7A	NC_007345.1	183442	184242	D	60S ribosomal protein L7a-2	183442..184242	Theileria parva strain Muguga	3502252
TpMuguga_02g00084	CDS	TpMuguga_02g00084	NC_007345.1	186925	188000	R	Endoplasmic reticulum-based factor for assembly of V-ATPase family protein	complement(join(186925..187005,187035..187125,187157..187307,187461..187554,187635..188000))	Theileria parva strain Muguga	3502253
TpMuguga_02g02180	CDS	las1	NC_007345.1	188378	190546	D	Las1-like family protein	join(188378..188616,188730..188924,188988..189488,189595..190546)	Theileria parva strain Muguga	3502115
TpMuguga_02g00087	CDS	TpMuguga_02g00087	NC_007345.1	191296	193428	D	uncharacterized protein	191296..193428	Theileria parva strain Muguga	3502116
TpMuguga_02g00088	CDS	PRMT11	NC_007345.1	193681	195073	D	putative protein arginine N-methyltransferase 1.2	join(193681..193903,193966..194297,194333..194410,194525..194656,194687..194996,195027..195073)	Theileria parva strain Muguga	3502117
TpMuguga_02g00089	CDS	rpl21b	NC_007345.1	195277	195759	R	60S ribosomal protein L21-1	complement(195277..195759)	Theileria parva strain Muguga	3502118
TpMuguga_02g00090	CDS	Btf3	NC_007345.1	196306	196800	R	NAC domain protein	complement(196306..196800)	Theileria parva strain Muguga	3502119
TpMuguga_02g02520	CDS	TpMuguga_02g02520	NC_007345.1	197371	198407	D	WW domain protein	join(197371..197664,197721..197834,197934..198407)	Theileria parva strain Muguga	3502120
TpMuguga_02g00093	CDS	RpL10	NC_007345.1	198621	199479	R	ribosomal protein L10.e	complement(join(198621..198866,198963..199163,199258..199479))	Theileria parva strain Muguga	3502007
TpMuguga_02g00094	CDS	rplX	NC_007345.1	200082	200897	R	ribosomal protein L24	complement(join(200082..200189,200224..200300,200336..200403,200451..200557,200619..200897))	Theileria parva strain Muguga	3502008
TpMuguga_02g00095	CDS	RPA1C	NC_007345.1	201262	203815	R	replication factor-a protein 1 (rpa1) family protein	complement(join(201262..201348,201378..201440,201473..201580,201610..201682,201712..201801,201833..201908,201941..202058,202109..202221,202255..202396,202466..202711,202741..202809,202841..202913,202952..203146,203179..203210,203280..203376,203409..203546,203658..203815))	Theileria parva strain Muguga	3502009
TpMuguga_02g00096	CDS	dnaJ	NC_007345.1	203899	205430	R	chaperone protein DnaJ	complement(join(203899..204527,204560..204659,204691..204738,204770..204909,204939..205027,205060..205430))	Theileria parva strain Muguga	3502010
TpMuguga_02g00097	CDS	TACP	NC_007345.1	205593	207765	R	Papain family cysteine protease family protein	complement(join(205593..205974,206256..207063,207117..207765))	Theileria parva strain Muguga	3502011
TpMuguga_02g00098	CDS	EPB2	NC_007345.1	208150	209932	R	Papain family cysteine protease family protein	complement(join(208150..208940,209008..209932))	Theileria parva strain Muguga	3501830
TpMuguga_02g00099	CDS	EPB2	NC_007345.1	210468	211887	R	Papain family cysteine protease family protein	complement(join(210468..211261,211329..211887))	Theileria parva strain Muguga	3501831
TpMuguga_02g02195	CDS	TpMuguga_02g02195	NC_007345.1	212110	212265	D	uncharacterized protein	212110..212265	Theileria parva strain Muguga	86047695
TpMuguga_02g00100	CDS	TpMuguga_02g00100	NC_007345.1	212422	212744	D	putative integral membrane protein	join(212422..212449,212487..212556,212586..212675,212708..212744)	Theileria parva strain Muguga	3501832
TpMuguga_02g00101	CDS	ZNF622	NC_007345.1	212804	213901	R	C2H2 type zinc-finger (2 copies) family protein	complement(212804..213901)	Theileria parva strain Muguga	3501833
TpMuguga_02g00102	CDS	Wrn	NC_007345.1	214098	214966	D	3'-5' exonuclease family protein	join(214098..214232,214271..214373,214414..214601,214631..214966)	Theileria parva strain Muguga	3501834
TpMuguga_02g02575	CDS	TpMuguga_02g02575	NC_007345.1	215036	216485	R	uncharacterized protein	complement(join(215036..215096,215132..215437,215467..215653,215684..215943,215976..216032,216073..216229,216271..216297,216341..216485))	Theileria parva strain Muguga	3501836
TpMuguga_02g00105	CDS	TpMuguga_02g00105	NC_007345.1	216577	217497	D	putative integral membrane protein	216577..217497	Theileria parva strain Muguga	3501720
TpMuguga_02g00106	CDS	Lsm3	NC_007345.1	217535	217932	R	U6 snRNA-associated Sm-like protein LSm3	complement(join(217535..217612,217643..217738,217781..217866,217908..217932))	Theileria parva strain Muguga	3501721
TpMuguga_02g00107	CDS	LACS5	NC_007345.1	218077	220466	D	AMP-binding enzyme family protein	join(218077..218191,218229..218313,218354..219251,219363..219935,220044..220466)	Theileria parva strain Muguga	3501722
TpMuguga_02g02005	CDS	TpMuguga_02g02005	NC_007345.1	220673	222841	R	uncharacterized protein	complement(join(220673..221374,221404..222288,222320..222464,222498..222535,222581..222841))	Theileria parva strain Muguga	3501723
TpMuguga_02g00110	CDS	TpMuguga_02g00110	NC_007345.1	222877	225871	R	HPC2 and ubinuclein domain protein	complement(join(222877..222983,223013..223834,223864..224339,224373..225570,225616..225871))	Theileria parva strain Muguga	3501725
TpMuguga_02g00111	CDS	UBP4	NC_007345.1	226298	227537	R	Ubiquitin carboxyl-terminal hydrolase family protein	complement(join(226298..227055,227087..227134,227165..227219,227250..227537))	Theileria parva strain Muguga	3501561
TpMuguga_02g00112	CDS	TpMuguga_02g00112	NC_007345.1	227746	229780	D	uncharacterized protein	join(227746..228190,228222..228371,228402..228535,228605..228947,229012..229106,229137..229207,229273..229520,229551..229780)	Theileria parva strain Muguga	3501562
TpMuguga_02g00113	CDS	MCM6	NC_007345.1	229852	233033	R	MCM2/3/5 family protein	complement(join(229852..232351,232403..232522,232588..233033))	Theileria parva strain Muguga	3501563
TpMuguga_02g00114	CDS	TpMuguga_02g00114	NC_007345.1	233331	234011	R	uncharacterized protein	complement(join(233331..233434,233472..233648,233684..233843,233874..234011))	Theileria parva strain Muguga	3501564
TpMuguga_02g00115	CDS	TpMuguga_02g00115	NC_007345.1	234499	236748	D	putative integral membrane protein	234499..236748	Theileria parva strain Muguga	3501566
TpMuguga_02g00116	CDS	TpMuguga_02g00116	NC_007345.1	236798	237245	R	putative integral membrane protein	complement(join(236798..236982,237016..237100,237135..237245))	Theileria parva strain Muguga	3501548
TpMuguga_02g00117	CDS	smc4	NC_007345.1	237659	242103	D	RecF/RecN/SMC N terminal domain protein	join(237659..239867,239937..241495,241611..241734,241799..242103)	Theileria parva strain Muguga	3501549
TpMuguga_02g00118	CDS	TpMuguga_02g00118	NC_007345.1	242219	242988	D	RNA polymerase III RPC4 family protein	join(242219..242434,242499..242536,242604..242674,242708..242988)	Theileria parva strain Muguga	3501550
TpMuguga_02g00119	CDS	KLHDC3	NC_007345.1	244134	249029	D	Galactose oxidase central domain protein	244134..249029	Theileria parva strain Muguga	3501551
TpMuguga_02g00120	CDS	TpMuguga_02g00120	NC_007345.1	249886	250707	D	uncharacterized protein	249886..250707	Theileria parva strain Muguga	3501552
TpMuguga_02g00121	CDS	DERL2	NC_007345.1	250781	251638	R	Der1-like family protein	complement(join(250781..250808,250841..250993,251130..251269,251300..251393,251424..251638))	Theileria parva strain Muguga	3501553
TpMuguga_02g00122	CDS	TpMuguga_02g00122	NC_007345.1	253281	254054	D	uncharacterized protein	253281..254054	Theileria parva strain Muguga	3501554
TpMuguga_02g00123	CDS	EIF4-A	NC_007345.1	254191	255630	R	Tp32; DEAD/DEAH box helicase	complement(join(254191..254208,254275..254401,254463..254940,255019..255256,255289..255630))	Theileria parva strain Muguga	3501593
TpMuguga_02g00124	CDS	Yars	NC_007345.1	256439	257964	D	putative tRNA binding domain protein	join(256439..256552,256592..256714,256743..256814,256844..256939,256970..257045,257088..257134,257166..257196,257227..257321,257352..257401,257432..257654,257704..257799,257831..257866,257896..257964)	Theileria parva strain Muguga	3501594
TpMuguga_02g00125	CDS	TpMuguga_02g00125	NC_007345.1	258011	259285	R	OST-HTH Associated domain protein	complement(258011..259285)	Theileria parva strain Muguga	3501595
TpMuguga_02g00126	CDS	TpMuguga_02g00126	NC_007345.1	260756	262052	D	Histidine phosphatase superfamily (branch 1) family protein	join(260756..261372,261404..261488,261574..261843,261874..261951,261981..262052)	Theileria parva strain Muguga	3501596
TpMuguga_02g00127	CDS	TpMuguga_02g00127	NC_007345.1	262078	264292	R	uncharacterized protein	complement(join(262078..262222,262253..262354,262392..262522,262552..262638,262709..262807,262860..262960,262991..263136,263168..263411,263466..263599,263632..263894,263924..264144,264220..264292))	Theileria parva strain Muguga	3501597
TpMuguga_02g00128	CDS	TpMuguga_02g00128	NC_007345.1	265066	265997	D	putative integral membrane protein	join(265066..265367,265398..265650,265682..265805,265837..265997)	Theileria parva strain Muguga	3501609
TpMuguga_02g00129	CDS	ddi1	NC_007345.1	266092	267544	R	Aspartyl protease family protein	complement(join(266092..266191,266225..266596,266626..266705,266738..266814,266846..266993,267022..267191,267227..267475,267517..267544))	Theileria parva strain Muguga	3501610
TpMuguga_02g00130	CDS	TpMuguga_02g00130	NC_007345.1	267801	268205	R	putative integral membrane protein	complement(267801..268205)	Theileria parva strain Muguga	3501611
TpMuguga_02g00131	CDS	TpMuguga_02g00131	NC_007345.1	268456	271502	R	RAP domain protein	complement(join(268456..268522,268559..268598,268628..268688,268718..268873,268905..269042,269073..269348,269379..269509,269538..270059,270088..270188,270241..270386,270416..270628,270658..270853,270883..270944,270974..271333,271368..271502))	Theileria parva strain Muguga	3501612
TpMuguga_02g00132	CDS	TpMuguga_02g00132	NC_007345.1	271829	274669	D	Colon cancer-associated protein Mic1-like family protein	join(271829..271870,271912..272036,272067..272151,272183..272341,272388..272528,272561..272643,272677..272786,272831..272986,273027..273130,273187..273269,273299..273367,273398..273533,273606..273705,273759..274396,274442..274669)	Theileria parva strain Muguga	3501613
TpMuguga_02g02405	CDS	TpMuguga_02g02405	NC_007345.1	274683	276247	R	uncharacterized protein	complement(join(274683..274709,274809..275036,275093..276122,276153..276247))	Theileria parva strain Muguga	86047718
TpMuguga_02g02410	CDS	TpMuguga_02g02410	NC_007345.1	276219	276869	R	uncharacterized protein	complement(join(276219..276273,276304..276545,276579..276869))	Theileria parva strain Muguga	3501882
TpMuguga_02g00134	CDS	pyk	NC_007345.1	277176	279275	D	Pyruvate kinase barrel domain protein	277176..279275	Theileria parva strain Muguga	3501883
TpMuguga_02g00135	CDS	TpMuguga_02g00135	NC_007345.1	279353	280404	R	uncharacterized protein	complement(join(279353..279558,279588..280404))	Theileria parva strain Muguga	3501884
TpMuguga_02g00136	CDS	TpMuguga_02g00136	NC_007345.1	280758	281599	D	uncharacterized protein	join(280758..280835,280867..281034,281068..281214,281247..281441,281471..281599)	Theileria parva strain Muguga	3501885
TpMuguga_02g00137	CDS	TpMuguga_02g00137	NC_007345.1	281609	282166	D	uncharacterized protein	join(281609..281734,281792..281894,281924..281975,282005..282081,282111..282166)	Theileria parva strain Muguga	86047667
TpMuguga_02g00138	CDS	TpMuguga_02g00138	NC_007345.1	282281	283705	R	uncharacterized protein	complement(282281..283705)	Theileria parva strain Muguga	3501887
TpMuguga_02g00139	CDS	NEK2	NC_007345.1	283803	285354	R	Protein kinase domain protein	complement(join(283803..284851,284908..285220,285262..285354))	Theileria parva strain Muguga	3501888
TpMuguga_02g00140	CDS	Ctsk	NC_007345.1	285809	287050	R	cysteine protease Tp8	complement(285809..287050)	Theileria parva strain Muguga	3502095
TpMuguga_02g00141	CDS	Slc25a5	NC_007345.1	287648	288553	R	ADP/ATP translocase 2 N-terminally processed	complement(287648..288553)	Theileria parva strain Muguga	3502096
TpMuguga_02g00142	CDS	TpMuguga_02g00142	NC_007345.1	289112	289941	D	Ubiquitin family protein	join(289112..289253,289400..289533,289582..289654,289693..289850,289897..289941)	Theileria parva strain Muguga	3502097
TpMuguga_02g00143	CDS	dnm1l	NC_007345.1	290182	292710	D	Dynamin central region family protein	join(290182..290379,290410..290888,290919..291069,291100..291187,291242..291591,291732..291884,291915..292064,292095..292238,292271..292407,292437..292613,292650..292710)	Theileria parva strain Muguga	3502098
TpMuguga_02g00144	CDS	repB	NC_007345.1	292813	295428	D	DNA repair helicase rad25 family protein	join(292813..293073,293111..293242,293274..293490,293523..293766,293801..294650,294685..294791,294822..294972,295078..295428)	Theileria parva strain Muguga	3502099
TpMuguga_02g00145	CDS	TpMuguga_02g00145	NC_007345.1	295462	296291	D	putative integral membrane protein	join(295462..295689,295728..295868,295909..296022,296053..296113,296146..296291)	Theileria parva strain Muguga	3502100
TpMuguga_02g00146	CDS	TpMuguga_02g00146	NC_007345.1	296265	299067	R	radical SAM enzyme/protein acetyltransferase ELP3 family protein	complement(join(296265..296758,296907..297014,297063..299067))	Theileria parva strain Muguga	3502278
TpMuguga_02g00147	CDS	TpMuguga_02g00147	NC_007345.1	299370	299873	D	uncharacterized protein	299370..299873	Theileria parva strain Muguga	3502279
TpMuguga_02g00148	CDS	TpMuguga_02g00148	NC_007345.1	300612	302555	D	HSP70	300612..302555	Theileria parva strain Muguga	3502280
TpMuguga_02g00149	CDS	TpMuguga_02g00149	NC_007345.1	302846	305036	R	Zinc finger C3HC4 type (RING finger) family protein	complement(join(302846..304939,304974..305036))	Theileria parva strain Muguga	3502281
TpMuguga_02g02435	CDS	cpsf-2	NC_007345.1	305283	308138	R	Cleavage and polyadenylation factor 2 C-terminal family protein	complement(join(305283..306063,306212..306588,306618..306721,306861..307933,307966..308138))	Theileria parva strain Muguga	3502282
TpMuguga_02g00152	CDS	TpMuguga_02g00152	NC_007345.1	308327	309684	R	putative integral membrane protein	complement(join(308327..309279,309309..309684))	Theileria parva strain Muguga	3502284
TpMuguga_02g00153	CDS	TpMuguga_02g00153	NC_007345.1	309751	310080	D	uncharacterized protein	join(309751..309774,309943..310080)	Theileria parva strain Muguga	3502261
TpMuguga_02g00154	CDS	RAD50	NC_007345.1	310369	314633	D	AAA domain protein	join(310369..310491,310525..310677,310707..310772,310801..310842,310872..310956,310986..311076,311105..311140,311169..311238,311267..311334,311365..311481,311510..311615,311645..311743,311774..311898,311929..312044,312074..312150,312181..312271,312302..312484,312517..312547,312588..312670,312716..312747,312779..312909,312939..313019,313050..313199,313229..313333,313363..313483,313515..313680,313765..313840,313871..314015,314045..314104,314137..314212,314264..314327,314359..314547,314582..314633)	Theileria parva strain Muguga	3502262
TpMuguga_02g00160	CDS	TpMuguga_02g00160	NC_007345.1	314914	315508	R	or RNP domain; RBD; RRM; RNA recognition motif family protein	complement(join(314914..315193,315223..315398,315434..315508))	Theileria parva strain Muguga	3502263
TpMuguga_02g00161	CDS	PEX4	NC_007345.1	315838	316431	R	Protein PEROXIN-4	complement(join(315838..316058,316119..316227,316257..316317,316349..316431))	Theileria parva strain Muguga	3502264
TpMuguga_02g00162	CDS	COPA	NC_007345.1	317561	322406	D	coatomer subunit alpha	join(317561..319618,319746..320132,320228..320345,320467..320541,320571..320736,320976..321673,321832..322406)	Theileria parva strain Muguga	3502133
TpMuguga_02g02255	CDS	TpMuguga_02g02255	NC_007345.1	322699	323129	R	Mitochondrial ribosomal protein L27 family protein	complement(join(322699..322758,322788..322852,322997..323129))	Theileria parva strain Muguga	86047699
TpMuguga_02g00163	CDS	TpMuguga_02g00163	NC_007345.1	324723	327359	D	AP2 domain protein	324723..327359	Theileria parva strain Muguga	3502134
TpMuguga_02g00164	CDS	TpMuguga_02g00164	NC_007345.1	327752	330448	D	uncharacterized protein	327752..330448	Theileria parva strain Muguga	3502135
TpMuguga_02g00165	CDS	exo2	NC_007345.1	330871	336051	D	XRN 5'-3' exonuclease N-terminus family protein	330871..336051	Theileria parva strain Muguga	3502136
TpMuguga_02g00166	CDS	TpMuguga_02g00166	NC_007345.1	336336	339785	R	MAC/Perforin domain protein	complement(join(336336..336475,336631..336712,336742..336809,336903..336996,337089..337334,337418..337842,338007..338200,338229..338440,338479..338669,338741..339785))	Theileria parva strain Muguga	3502137
TpMuguga_02g00167	CDS	TpMuguga_02g00167	NC_007345.1	340030	341803	D	tRNA synthetases class II core domain (F) family protein	join(340030..340762,340824..341803)	Theileria parva strain Muguga	3502138
TpMuguga_02g00168	CDS	TpMuguga_02g00168	NC_007345.1	342354	344198	R	uncharacterized protein	complement(342354..344198)	Theileria parva strain Muguga	3502139
TpMuguga_02g00169	CDS	CEP76	NC_007345.1	344353	346941	R	C2 domain protein	complement(join(344353..344580,344701..346941))	Theileria parva strain Muguga	3502037
TpMuguga_02g00170	CDS	TpMuguga_02g00170	NC_007345.1	346979	347551	R	uncharacterized protein	complement(join(346979..347323,347384..347551))	Theileria parva strain Muguga	3502038
TpMuguga_02g00171	CDS	Dhodh	NC_007345.1	348208	350033	R	dihydroorotate dehydrogenase (fumarate)	complement(join(348208..348251,348281..348347,348377..348457,348487..348633,348666..348710,348740..348781,348811..349070,349099..349196,349233..349407,349671..349914,349944..350033))	Theileria parva strain Muguga	3502039
TpMuguga_02g00172	CDS	sec18	NC_007345.1	350052	353649	R	ATPase family associated with various cellular activities (AAA) family protein	complement(join(350052..350113,350208..350295,350473..350604,350634..350861,351062..351457,351808..352029,352059..352130,352161..352343,352477..352562,352592..352875,352904..353024,353191..353393,353469..353557,353587..353649))	Theileria parva strain Muguga	3502040
TpMuguga_02g00174	CDS	TpMuguga_02g00174	NC_007345.1	353719	357155	R	uncharacterized protein	complement(join(353719..354034,354310..357155))	Theileria parva strain Muguga	3501598
TpMuguga_02g02500	CDS	XPO1	NC_007345.1	357985	362080	R	CRM1 C terminal family protein	complement(join(357985..358595,358894..362080))	Theileria parva strain Muguga	3501601
TpMuguga_02g00178	CDS	CPK3	NC_007345.1	364045	366990	D	Protein kinase domain protein	join(364045..365320,365527..365838,366191..366990)	Theileria parva strain Muguga	3501602
TpMuguga_02g00179	CDS	TRMT12	NC_007345.1	367245	371185	D	Methyltransferase TYW3 family protein	join(367245..370342,370372..371185)	Theileria parva strain Muguga	3501603
TpMuguga_02g00180	CDS	PHF5A	NC_007345.1	371262	371819	D	PHD finger-like domain-containing protein 5A	join(371262..371316,371467..371579,371646..371819)	Theileria parva strain Muguga	3501604
TpMuguga_02g00181	CDS	TpMuguga_02g00181	NC_007345.1	372118	376050	D	Elongation factor Tu GTP binding domain protein	join(372118..372217,372292..372344,372383..372424,372457..372537,372598..372914,372946..373262,373334..373429,373496..373695,373831..374373,374476..374682,374844..375434,375569..375635,375808..375950,376000..376050)	Theileria parva strain Muguga	3501605
TpMuguga_02g00182	CDS	TpMuguga_02g00182	NC_007345.1	376136	378470	R	Ring finger domain protein	complement(join(376136..377056,377287..377919,378156..378470))	Theileria parva strain Muguga	3501749
TpMuguga_02g00183	CDS	PHO1-H9	NC_007345.1	378947	382048	R	EXS family protein	complement(join(378947..379075,379108..379288,379389..379517,379547..379636,379693..379765,379797..379834,379957..380190,380221..380364,380471..381182,381214..382048))	Theileria parva strain Muguga	3501750
TpMuguga_02g00184	CDS	TpMuguga_02g00184	NC_007345.1	382386	383757	D	WD domain G-beta repeat protein	join(382386..382470,382502..382610,382642..382741,382779..382963,382994..383059,383091..383158,383232..383301,383331..383396,383433..383605,383633..383757)	Theileria parva strain Muguga	3501751
TpMuguga_02g00185	CDS	TpMuguga_02g00185	NC_007345.1	383847	386153	R	uncharacterized protein	complement(383847..386153)	Theileria parva strain Muguga	3501752
TpMuguga_02g02675	CDS	TpMuguga_02g02675	NC_007345.1	386726	388207	D	uncharacterized protein	join(386726..386909,386973..387209,387239..387448,387498..387559,387598..387661,387692..387731,387767..387870,387903..388207)	Theileria parva strain Muguga	3501726
TpMuguga_02g02530	CDS	TpMuguga_02g02530	NC_007345.1	388798	389688	D	uncharacterized protein	join(388798..388835,388867..389009,389041..389124,389299..389377,389458..389534,389570..389688)	Theileria parva strain Muguga	86047728
TpMuguga_02g00187	CDS	TpMuguga_02g00187	NC_007345.1	390601	393912	D	GYF domain protein	390601..393912	Theileria parva strain Muguga	3501727
TpMuguga_02g00188	CDS	rplX	NC_007345.1	394195	395183	R	ribosomal protein L24	complement(join(394195..394239,394422..394468,394500..394546,394575..394660,394695..394790,394878..395183))	Theileria parva strain Muguga	3501728
TpMuguga_02g00189	CDS	TpMuguga_02g00189	NC_007345.1	395331	396531	R	uncharacterized protein	complement(join(395331..395611,395715..396531))	Theileria parva strain Muguga	3501729
TpMuguga_02g00190	CDS	TpMuguga_02g00190	NC_007345.1	397095	398502	D	Cyclin domain protein	join(397095..397250,397307..397809,397908..397997,398047..398224,398327..398407,398437..398502)	Theileria parva strain Muguga	3501730
TpMuguga_02g00191	CDS	aurK	NC_007345.1	398808	400189	R	Protein kinase domain protein	complement(join(398808..399639,399671..399742,399868..399962,400067..400189))	Theileria parva strain Muguga	3501731
TpMuguga_02g02585	CDS	TpMuguga_02g02585	NC_007345.1	400499	401212	D	uncharacterized protein	join(400499..400808,400838..400929,400956..401083,401113..401212)	Theileria parva strain Muguga	3501518
TpMuguga_02g00194	CDS	TpMuguga_02g00194	NC_007345.1	401287	403190	R	uncharacterized protein	complement(join(401287..401416,401527..401728,401831..402153,402249..402534,402569..402762,402793..403190))	Theileria parva strain Muguga	3501519
TpMuguga_02g00195	CDS	TpMuguga_02g00195	NC_007345.1	403952	405127	D	putative integral membrane protein	403952..405127	Theileria parva strain Muguga	3501520
TpMuguga_02g00196	CDS	GLRX3	NC_007345.1	405277	406026	R	Glutaredoxin family protein	complement(join(405277..405366,405401..405712,405746..405838,405895..406026))	Theileria parva strain Muguga	3501521
TpMuguga_02g00197	CDS	Coq3	NC_007345.1	406156	407085	D	3-demethylubiquinone-9 3-O-methyltransferase	406156..407085	Theileria parva strain Muguga	3501522
TpMuguga_02g00966	CDS	TpMuguga_02g00966	NC_007345.1	407112	408347	D	C-terminal putative domain protein	join(407112..407195,407300..407564,407614..407909,408024..408249,408280..408347)	Theileria parva strain Muguga	3501429
TpMuguga_02g00198	CDS	top1	NC_007345.1	408481	412092	R	Eukaryotic DNA topoisomerase I catalytic core family protein	complement(join(408481..408691,408803..408885,408915..409550,409655..409735,409888..410102,410244..412035,412075..412092))	Theileria parva strain Muguga	3501430
TpMuguga_02g00199	CDS	TpMuguga_02g00199	NC_007345.1	412234	415174	D	Bromodomain protein	join(412234..412275,412423..412566,412705..412859,412963..415174)	Theileria parva strain Muguga	3501431
TpMuguga_02g00200	CDS	TpMuguga_02g00200	NC_007345.1	415479	418373	R	Phosphatidylinositol-4-phosphate 5-Kinase family protein	complement(join(415479..416437,416580..418045,418249..418373))	Theileria parva strain Muguga	3501432
TpMuguga_02g00201	CDS	RPN11	NC_007345.1	419121	420443	R	JAB1/Mov34/MPN/PAD-1 ubiquitin protease	complement(join(419121..419354,419455..419639,419714..419854,419923..420057,420088..420184,420297..420443))	Theileria parva strain Muguga	3501433
TpMuguga_02g00202	CDS	TFIIB1	NC_007345.1	421154	422182	D	Transcription factor TFIIB repeat family protein	421154..422182	Theileria parva strain Muguga	3502254
TpMuguga_02g00203	CDS	AAK6	NC_007345.1	422235	422789	R	AAA domain protein	complement(422235..422789)	Theileria parva strain Muguga	3502255
TpMuguga_02g02125	CDS	rsmB	NC_007345.1	423029	424581	D	uncharacterized protein	join(423029..423494,423595..423737,423773..423901,423932..424027,424073..424153,424345..424581)	Theileria parva strain Muguga	3502256
TpMuguga_02g02345	CDS	TpMuguga_02g02345	NC_007345.1	424706	425489	D	putative integral membrane protein	join(424706..424773,424873..424996,425065..425193,425251..425321,425354..425394,425425..425489)	Theileria parva strain Muguga	86047711
TpMuguga_02g00205	CDS	NRPB9A	NC_007345.1	425643	426308	D	RNA polymerases M/15 Kd subunit family protein	join(425643..425671,425737..425880,425978..426308)	Theileria parva strain Muguga	3502257
TpMuguga_02g00206	CDS	erv1	NC_007345.1	426414	426873	R	Erv1 / Alr family protein	complement(join(426414..426653,426718..426873))	Theileria parva strain Muguga	3502258
TpMuguga_02g00207	CDS	TpMuguga_02g00207	NC_007345.1	426990	428032	R	uncharacterized protein	complement(join(426990..427041,427126..427184,427230..427256,427292..427323,427362..427389,427470..427544,427600..427669,427725..427864,427895..428032))	Theileria parva strain Muguga	3502259
TpMuguga_02g00208	CDS	TpMuguga_02g00208	NC_007345.1	428323	429084	R	uncharacterized protein	complement(428323..429084)	Theileria parva strain Muguga	3502260
TpMuguga_02g02225	CDS	TpMuguga_02g02225	NC_007345.1	429703	429963	R	putative integral membrane protein	complement(join(429703..429795,429826..429963))	Theileria parva strain Muguga	86047698
TpMuguga_02g00209	CDS	TpMuguga_02g00209	NC_007345.1	430247	431400	D	Prefoldin subunit family protein	join(430247..430301,430333..430414,430522..430611,430681..430896,430926..430995,431038..431400)	Theileria parva strain Muguga	3502322
TpMuguga_02g00210	CDS	TpMuguga_02g00210	NC_007345.1	431467	432252	R	uncharacterized protein	complement(431467..432252)	Theileria parva strain Muguga	3502323
TpMuguga_02g00211	CDS	TpMuguga_02g00211	NC_007345.1	432778	433539	R	uncharacterized protein	complement(432778..433539)	Theileria parva strain Muguga	3502324
TpMuguga_02g00212	CDS	TpMuguga_02g00212	NC_007345.1	434103	434867	R	uncharacterized protein	complement(434103..434867)	Theileria parva strain Muguga	3502325
TpMuguga_02g00213	CDS	TpMuguga_02g00213	NC_007345.1	435449	436543	R	uncharacterized protein	complement(435449..436543)	Theileria parva strain Muguga	3502326
TpMuguga_02g00961	CDS	TpMuguga_02g00961	NC_007345.1	437461	438228	R	uncharacterized protein	complement(437461..438228)	Theileria parva strain Muguga	3502327
TpMuguga_02g00214	CDS	TpMuguga_02g00214	NC_007345.1	438587	439375	R	uncharacterized protein	complement(438587..439375)	Theileria parva strain Muguga	3502328
TpMuguga_02g00215	CDS	TpMuguga_02g00215	NC_007345.1	439592	440386	R	uncharacterized protein	complement(439592..440386)	Theileria parva strain Muguga	3501758
TpMuguga_02g00216	CDS	TpMuguga_02g00216	NC_007345.1	441499	445176	R	uncharacterized protein	complement(441499..445176)	Theileria parva strain Muguga	3501759
TpMuguga_02g00217	CDS	bud31	NC_007345.1	446202	446740	D	uncharacterized protein	join(446202..446418,446511..446740)	Theileria parva strain Muguga	3501760
TpMuguga_02g00218	CDS	TpMuguga_02g00218	NC_007345.1	446876	448741	R	Insulinase (Peptidase family M16) family protein	complement(join(446876..447540,447613..447945,448025..448541,448679..448741))	Theileria parva strain Muguga	3501761
TpMuguga_02g00219	CDS	TpMuguga_02g00219	NC_007345.1	448896	451463	D	uncharacterized protein	join(448896..449005,449063..451463)	Theileria parva strain Muguga	3501762
TpMuguga_02g00220	CDS	TpMuguga_02g00220	NC_007345.1	451547	452040	R	uncharacterized protein	complement(join(451547..451777,451870..452040))	Theileria parva strain Muguga	3501763
TpMuguga_02g00221	CDS	ATJ10	NC_007345.1	452909	454618	D	X-domain of DnaJ-containing family protein	452909..454618	Theileria parva strain Muguga	3501764
TpMuguga_02g00222	CDS	RPS29	NC_007345.1	454702	455029	R	40S ribosomal protein S29	complement(join(454702..454710,454788..454887,454974..455029))	Theileria parva strain Muguga	3501693
TpMuguga_02g00223	CDS	PRY1	NC_007345.1	455226	456188	R	Cysteine-rich secretory family protein	complement(join(455226..455252,455284..455312,455402..455480,455509..455573,455636..455662,455717..455834,455866..455908,455973..456037,456102..456188))	Theileria parva strain Muguga	3501694
TpMuguga_02g00224	CDS	TpMuguga_02g00224	NC_007345.1	456474	457766	R	putative chloroquine resistance transporter	complement(456474..457766)	Theileria parva strain Muguga	3501695
TpMuguga_02g00225	CDS	TpMuguga_02g00225	NC_007345.1	458440	460083	D	uncharacterized protein	join(458440..458739,458815..458991,459077..459176,459280..459479,459565..460083)	Theileria parva strain Muguga	3501696
TpMuguga_02g00226	CDS	TpMuguga_02g00226	NC_007345.1	460484	461266	D	AP2 domain protein	460484..461266	Theileria parva strain Muguga	3501697
TpMuguga_02g02000	CDS	PAK1IP1	NC_007345.1	461664	462961	R	WD domain G-beta repeat protein	complement(join(461664..461706,461760..461836,461867..461928,461958..462059,462114..462177,462228..462597,462686..462753,462785..462961))	Theileria parva strain Muguga	3501698
TpMuguga_02g00229	CDS	TpMuguga_02g00229	NC_007345.1	463082	463293	R	uncharacterized protein	complement(join(463082..463150,463201..463293))	Theileria parva strain Muguga	3501811
TpMuguga_02g00230	CDS	STX2	NC_007345.1	463589	464754	D	SNARE domain protein	join(463589..463705,463797..464303,464350..464419,464510..464754)	Theileria parva strain Muguga	3501812
TpMuguga_02g02515	CDS	TpMuguga_02g02515	NC_007345.1	465059	465894	D	Josephin family protein	join(465059..465139,465206..465287,465343..465407,465484..465632,465699..465894)	Theileria parva strain Muguga	86047727
TpMuguga_02g00231	CDS	IPO7	NC_007345.1	466093	469916	D	Importin-beta domain protein	join(466093..466200,466398..467084,467177..467357,467450..468454,468576..469352,469507..469916)	Theileria parva strain Muguga	3501813
TpMuguga_02g00232	CDS	TpMuguga_02g00232	NC_007345.1	470644	472410	D	Tpr family protein	470644..472410	Theileria parva strain Muguga	3501814
TpMuguga_02g00233	CDS	TpMuguga_02g00233	NC_007345.1	472694	478993	R	uncharacterized protein	complement(join(472694..473359,473473..473943,474044..474157,474302..474629,474662..474733,474891..478993))	Theileria parva strain Muguga	3501815
TpMuguga_02g02300	CDS	TpMuguga_02g02300	NC_007345.1	479297	479537	D	uncharacterized protein	join(479297..479403,479468..479537)	Theileria parva strain Muguga	86047705
TpMuguga_02g00234	CDS	TpMuguga_02g00234	NC_007345.1	479539	480060	R	Glycine cleavage H-family protein	complement(479539..480060)	Theileria parva strain Muguga	3501816
TpMuguga_02g00235	CDS	RPL37C	NC_007345.1	480107	480573	R	60S ribosomal protein L37-3	complement(join(480107..480261,480453..480573))	Theileria parva strain Muguga	3502336
TpMuguga_02g00236	CDS	TpMuguga_02g00236	NC_007345.1	480823	482703	R	uncharacterized protein	complement(join(480823..480999,481030..481201,481233..481303,481372..481499,481528..481663,481707..482519,482578..482703))	Theileria parva strain Muguga	3502337
TpMuguga_02g00237	CDS	NRPB10L	NC_007345.1	482979	483299	D	DNA-directed RNA polymerases subunit RPABC5	join(482979..483073,483141..483235,483268..483299)	Theileria parva strain Muguga	3502338
TpMuguga_02g00238	CDS	TpMuguga_02g00238	NC_007345.1	483374	484146	R	Ras-induced vulval development antagonist family protein	complement(join(483374..483405,483437..483536,483604..484146))	Theileria parva strain Muguga	3502339
TpMuguga_02g00239	CDS	TpMuguga_02g00239	NC_007345.1	484358	487294	R	uncharacterized protein	complement(484358..487294)	Theileria parva strain Muguga	3502340
TpMuguga_02g00240	CDS	TpMuguga_02g00240	NC_007345.1	487498	488790	R	uncharacterized protein	complement(join(487498..487591,487633..487745,487777..487871,487917..488033,488104..488274,488343..488790))	Theileria parva strain Muguga	3502341
TpMuguga_02g02665	CDS	TpMuguga_02g02665	NC_007345.1	488815	489485	R	uncharacterized protein	complement(join(488815..488941,488982..489225,489275..489376,489407..489485))	Theileria parva strain Muguga	86047737
TpMuguga_02g00241	CDS	bud32	NC_007345.1	490428	491219	D	Kae1-associated kinase Bud32	join(490428..490472,490540..490947,491018..491068,491109..491219)	Theileria parva strain Muguga	3502342
TpMuguga_02g00242	CDS	Sco2	NC_007345.1	491244	492288	R	uncharacterized protein	complement(join(491244..491332,491371..491479,491511..491596,491642..491683,491741..491809,491850..491972,492045..492100,492132..492172,492205..492288))	Theileria parva strain Muguga	3501900
TpMuguga_02g00243	CDS	pss1	NC_007345.1	492424	495261	R	Tp27; Hsp70 family protein	complement(join(492424..493728,493824..494068,494111..494693,494783..494999,495155..495261))	Theileria parva strain Muguga	3501901
TpMuguga_02g00244	CDS	TpMuguga_02g00244	NC_007345.1	496400	499293	D	Tp7; HSP90	join(496400..496469,496700..497988,498253..498753,498988..499293)	Theileria parva strain Muguga	3501902
TpMuguga_02g00245	CDS	ARF	NC_007345.1	499803	500456	D	ADP-ribosylation factor 2	join(499803..500021,500085..500323,500369..500456)	Theileria parva strain Muguga	3501903
TpMuguga_02g00246	CDS	TpMuguga_02g00246	NC_007345.1	500473	501318	D	uncharacterized protein	500473..501318	Theileria parva strain Muguga	3501904
TpMuguga_02g00247	CDS	TpMuguga_02g00247	NC_007345.1	501695	503608	D	RNA polymerase I-associated factor PAF67 family protein	join(501695..502113,502174..502280,502312..502463,502535..502746,502779..502997,503068..503608)	Theileria parva strain Muguga	3502019
TpMuguga_02g00248	CDS	Gtpbp4	NC_007345.1	504072	506175	R	NOGCT (NUC087) domain protein	complement(join(504072..504491,504589..504755,504785..505482,505514..505791,505899..506096,506143..506175))	Theileria parva strain Muguga	3502021
TpMuguga_02g00249	CDS	TpMuguga_02g00249	NC_007345.1	506618	507808	D	uncharacterized protein	506618..507808	Theileria parva strain Muguga	3502022
TpMuguga_02g00250	CDS	TpMuguga_02g00250	NC_007345.1	508039	509710	D	uncharacterized protein	join(508039..508092,508244..509710)	Theileria parva strain Muguga	3502023
TpMuguga_02g00251	CDS	nat10	NC_007345.1	509815	512694	R	GNAT acetyltransferase 2 family protein	complement(join(509815..509936,509970..510144,510174..512297,512329..512694))	Theileria parva strain Muguga	3502024
TpMuguga_02g02400	CDS	TpMuguga_02g02400	NC_007345.1	512954	513482	R	uncharacterized protein	complement(join(512954..513123,513155..513215,513248..513325,513356..513425,513457..513482))	Theileria parva strain Muguga	86047717
TpMuguga_02g00252	CDS	TpMuguga_02g00252	NC_007345.1	513534	514168	R	uncharacterized protein	complement(join(513534..513703,513862..513974,514007..514102,514137..514168))	Theileria parva strain Muguga	3502025
TpMuguga_02g00253	CDS	atp5D	NC_007345.1	514427	514994	D	ATP synthase delta domain protein	join(514427..514556,514599..514740,514772..514924,514955..514994)	Theileria parva strain Muguga	3502053
TpMuguga_02g00254	CDS	TpMuguga_02g00254	NC_007345.1	515017	515502	R	uncharacterized protein	complement(join(515017..515061,515096..515400,515430..515502))	Theileria parva strain Muguga	3502054
TpMuguga_02g00255	CDS	TpMuguga_02g00255	NC_007345.1	515628	516345	R	putative integral membrane protein	complement(join(515628..515763,515817..515892,515985..516345))	Theileria parva strain Muguga	3502055
TpMuguga_02g00256	CDS	TpMuguga_02g00256	NC_007345.1	516726	517449	D	putative integral membrane protein	join(516726..516795,516833..516917,516947..516989,517026..517118,517148..517228,517258..517449)	Theileria parva strain Muguga	3502056
TpMuguga_02g00257	CDS	PREP1	NC_007345.1	517463	520822	R	Peptidase M16C associated family protein	complement(517463..520822)	Theileria parva strain Muguga	3502057
TpMuguga_02g02035	CDS	TpMuguga_02g02035	NC_007345.1	521130	525256	R	Ion channel family protein	complement(join(521130..521812,521843..521994,522024..522192,522221..522475,522624..522782,522824..522980,523012..523117,523147..523253,523283..523527,523559..523696,523733..523833,523905..524032,524063..524192,524263..524361,524391..524547,524578..524796,524878..524937,524974..525256))	Theileria parva strain Muguga	3502107
TpMuguga_02g00260	CDS	PREP1	NC_007345.1	525326	528871	R	Peptidase M16C associated family protein	complement(525326..528871)	Theileria parva strain Muguga	3502108
TpMuguga_02g00261	CDS	pli1	NC_007345.1	529312	530781	D	MIZ/SP-RING zinc finger family protein	529312..530781	Theileria parva strain Muguga	3502109
TpMuguga_02g00262	CDS	TpMuguga_02g00262	NC_007345.1	530894	533770	R	uncharacterized protein	complement(join(530894..533388,533449..533770))	Theileria parva strain Muguga	3502110
TpMuguga_02g00263	CDS	TpMuguga_02g00263	NC_007345.1	533879	534728	R	uncharacterized protein	complement(join(533879..534547,534579..534623,534660..534728))	Theileria parva strain Muguga	86047668
TpMuguga_02g00264	CDS	rbm42	NC_007345.1	535102	535782	D	or RNP domain; RBD; RRM; RNA recognition motif family protein	535102..535782	Theileria parva strain Muguga	3502112
TpMuguga_02g00265	CDS	TpMuguga_02g00265	NC_007345.1	535859	536495	R	putative integral membrane protein	complement(join(535859..536115,536208..536252,536282..536495))	Theileria parva strain Muguga	3502113
TpMuguga_02g02080	CDS	TpMuguga_02g02080	NC_007345.1	536680	540225	R	uncharacterized protein	complement(join(536680..537496,537625..537899,537956..538561,538640..538959,539022..540225))	Theileria parva strain Muguga	3502121
TpMuguga_02g00268	CDS	TpMuguga_02g00268	NC_007345.1	540727	542037	R	putative integral membrane protein	complement(540727..542037)	Theileria parva strain Muguga	3502123
TpMuguga_02g00269	CDS	TRP3	NC_007345.1	542131	544277	R	Indole-3-glycerol phosphate synthase family protein	complement(join(542131..542499,542593..543144,543230..543406,543455..543603,543647..543845,543900..544277))	Theileria parva strain Muguga	3502124
TpMuguga_02g02200	CDS	DOA1	NC_007345.1	544633	547091	D	protein DOA1	join(544633..545088,545162..545309,545396..545491,545522..545659,545710..545834,545894..546001,546034..546159,546190..546260,546352..546480,546513..546651,546705..547091)	Theileria parva strain Muguga	3502125
TpMuguga_02g00272	CDS	TpMuguga_02g00272	NC_007345.1	547188	548058	R	Ribosomal protein L9 domain protein	complement(join(547188..547233,547266..547641,547752..548058))	Theileria parva strain Muguga	3502174
TpMuguga_02g02395	CDS	TpMuguga_02g02395	NC_007345.1	548268	548790	D	putative integral membrane protein	join(548268..548387,548429..548539,548613..548649,548682..548740,548782..548790)	Theileria parva strain Muguga	3502175
TpMuguga_02g02065	CDS	TpMuguga_02g02065	NC_007345.1	548852	549530	D	uncharacterized protein	join(548852..549060,549110..549530)	Theileria parva strain Muguga	86047683
TpMuguga_02g00274	CDS	TpMuguga_02g00274	NC_007345.1	549559	551577	R	uncharacterized protein	complement(549559..551577)	Theileria parva strain Muguga	3502176
TpMuguga_02g00275	CDS	TpMuguga_02g00275	NC_007345.1	552184	553239	R	uncharacterized protein	complement(552184..553239)	Theileria parva strain Muguga	3502177
TpMuguga_02g02290	CDS	TpMuguga_02g02290	NC_007345.1	554343	555809	R	uncharacterized protein	complement(554343..555809)	Theileria parva strain Muguga	86047704
TpMuguga_02g02295	CDS	Pole2	NC_007345.1	556593	558060	R	DNA polymerase alpha/epsilon subunit B family protein	complement(join(556593..556672,556705..556783,556847..556954,556987..557171,557264..557314,557346..557396,557460..557672,557743..557866,557913..558014,558046..558060))	Theileria parva strain Muguga	3502178
TpMuguga_02g02285	CDS	TpMuguga_02g02285	NC_007345.1	558287	559232	R	uncharacterized protein	complement(join(558287..558301,558363..558459,558508..558606,558641..558926,559019..559232))	Theileria parva strain Muguga	86047703
TpMuguga_02g02535	CDS	TpMuguga_02g02535	NC_007345.1	559374	565875	R	uncharacterized protein	complement(join(559374..560206,560317..561080,561187..564913,564980..565546,565578..565875))	Theileria parva strain Muguga	3502179
TpMuguga_02g00280	CDS	TpMuguga_02g00280	NC_007345.1	566233	567883	R	uncharacterized protein	complement(join(566233..566604,566636..567401,567441..567481,567514..567624,567654..567724,567790..567883))	Theileria parva strain Muguga	3502194
TpMuguga_02g00281	CDS	dnaJ	NC_007345.1	568076	569773	R	DnaJ C terminal domain protein	complement(join(568076..568258,568332..568437,568469..568560,568624..568758,568808..569085,569143..569773))	Theileria parva strain Muguga	3502195
TpMuguga_02g00282	CDS	TpMuguga_02g00282	NC_007345.1	569975	570703	D	Fis1 C-terminal tetratricopeptide repeat family protein	join(569975..570034,570173..570306,570377..570467,570501..570561,570594..570629,570663..570703)	Theileria parva strain Muguga	3502196
TpMuguga_02g02610	CDS	TpMuguga_02g02610	NC_007345.1	570801	571138	R	putative integral membrane protein	complement(join(570801..570950,570983..571045,571079..571138))	Theileria parva strain Muguga	86047734
TpMuguga_02g00283	CDS	RPL39C	NC_007345.1	571279	571640	R	60S ribosomal protein L39-1	complement(join(571279..571327,571374..571477,571638..571640))	Theileria parva strain Muguga	3502197
TpMuguga_02g02445	CDS	TpMuguga_02g02445	NC_007345.1	571880	572411	D	uncharacterized protein	join(571880..571953,572019..572204,572240..572411)	Theileria parva strain Muguga	86047722
TpMuguga_02g00284	CDS	TpMuguga_02g00284	NC_007345.1	572551	574719	D	uncharacterized protein	572551..574719	Theileria parva strain Muguga	3502180
TpMuguga_02g00285	CDS	TpMuguga_02g00285	NC_007345.1	574809	577018	R	Eukaryotic membrane family protein	complement(join(574809..575034,575107..575361,575460..576279,576356..576464,576496..576609,576647..577018))	Theileria parva strain Muguga	3502181
TpMuguga_02g00286	CDS	Ddx42	NC_007345.1	577235	578794	R	DEAD/DEAH box helicase family protein	complement(577235..578794)	Theileria parva strain Muguga	3502182
TpMuguga_02g00287	CDS	Pde12	NC_007345.1	579355	581768	R	Endonuclease/Exonuclease/phosphatase family protein	complement(join(579355..579462,579559..579785,579867..580185,580225..581443,581515..581768))	Theileria parva strain Muguga	3502183
TpMuguga_02g00288	CDS	Ube2b	NC_007345.1	582006	582554	D	Ubiquitin-conjugating enzyme E2 B	join(582006..582246,582278..582366,582396..582554)	Theileria parva strain Muguga	3502184
TpMuguga_02g00289	CDS	TpMuguga_02g00289	NC_007345.1	582720	584774	R	T-complex protein 1 subunit epsilon	complement(join(582720..583219,583293..583521,583556..583681,583761..583901,583977..584112,584182..584429,584499..584737,584774))	Theileria parva strain Muguga	3502185
TpMuguga_02g00290	CDS	sec22	NC_007345.1	585008	585803	R	Synaptobrevin family protein	complement(join(585008..585183,585213..585359,585401..585803))	Theileria parva strain Muguga	3502000
TpMuguga_02g00291	CDS	TpMuguga_02g00291	NC_007345.1	586016	586509	R	Protein phosphatase inhibitor 2 (IPP-2) family protein	complement(join(586016..586046,586084..586214,586246..586296,586339..586447,586487..586509))	Theileria parva strain Muguga	3502001
TpMuguga_02g00292	CDS	dhx8	NC_007345.1	586731	588729	R	Helicase associated domain (HA2) family protein	complement(join(586731..586854,586886..586950,586983..587219,587252..587349,587403..587536,587578..587708,587750..587856,587885..588374,588454..588729))	Theileria parva strain Muguga	3502002
TpMuguga_02g00293	CDS	TpMuguga_02g00293	NC_007345.1	589127	590557	R	Major Facilitator Superfamily protein	complement(589127..590557)	Theileria parva strain Muguga	3502003
TpMuguga_02g00294	CDS	TpMuguga_02g00294	NC_007345.1	591323	591954	R	uncharacterized protein	complement(join(591323..591525,591557..591729,591761..591954))	Theileria parva strain Muguga	3502004
TpMuguga_02g02130	CDS	TpMuguga_02g02130	NC_007345.1	592168	594191	D	uncharacterized protein	join(592168..592319,592349..592499,592528..592584,592614..592707,592765..592872,592901..593011,593066..593147,593183..593543,593575..593642,593676..593796,593825..593950,593982..594191)	Theileria parva strain Muguga	3502005
TpMuguga_02g00297	CDS	TpMuguga_02g00297	NC_007345.1	594265	594915	R	Mitochondrial ribosomal protein L51 / S25 / CI-B8 domain protein	complement(join(594265..594519,594552..594705,594734..594915))	Theileria parva strain Muguga	3501895
TpMuguga_02g00298	CDS	rps11	NC_007345.1	595495	596001	D	40S ribosomal protein S11	join(595495..595515,595552..596001)	Theileria parva strain Muguga	3501896
TpMuguga_02g02580	CDS	TpMuguga_02g02580	NC_007345.1	596055	598269	R	uncharacterized protein	complement(join(596055..596088,596120..596292,596323..596574,596648..596707,596740..596803,596833..596879,596940..597022,597057..597143,597203..597383,597414..597649,597690..597823,597916..598148,598225..598269))	Theileria parva strain Muguga	86047731
TpMuguga_02g00299	CDS	TpMuguga_02g00299	NC_007345.1	598499	598795	D	uncharacterized protein	598499..598795	Theileria parva strain Muguga	3501897
TpMuguga_02g00300	CDS	TpMuguga_02g00300	NC_007345.1	599594	601127	D	uncharacterized protein	join(599594..600395,600487..601127)	Theileria parva strain Muguga	3501898
TpMuguga_02g00301	CDS	TpMuguga_02g00301	NC_007345.1	601559	602363	R	putative integral membrane protein	complement(join(601559..601666,601696..601802,601958..602363))	Theileria parva strain Muguga	3501899
TpMuguga_02g00302	CDS	TpMuguga_02g00302	NC_007345.1	602714	605098	R	uncharacterized protein	complement(join(602714..603871,603903..604093,604212..604456,604530..604747,604817..605098))	Theileria parva strain Muguga	3501837
TpMuguga_02g00303	CDS	EIF3K	NC_007345.1	605329	606063	D	translation initiation factor 1 subunit K	605329..606063	Theileria parva strain Muguga	3501838
TpMuguga_02g00304	CDS	BETAC-AD	NC_007345.1	606281	609105	R	Adaptin N terminal region family protein	complement(join(606281..608457,608545..608684,608801..609105))	Theileria parva strain Muguga	3501839
TpMuguga_02g00305	CDS	RPL30	NC_007345.1	609427	609787	R	60S ribosomal protein L30-2	complement(join(609427..609629,609664..609787))	Theileria parva strain Muguga	3501840
TpMuguga_02g00306	CDS	TpMuguga_02g00306	NC_007345.1	610160	612427	R	uncharacterized protein	complement(610160..612427)	Theileria parva strain Muguga	3501841
TpMuguga_02g00307	CDS	TIF3H1	NC_007345.1	612894	613997	R	JAB1/Mov34/MPN/PAD-1 ubiquitin protease family protein	complement(join(612894..613286,613326..613997))	Theileria parva strain Muguga	3501842
TpMuguga_02g00308	CDS	TpMuguga_02g00308	NC_007345.1	614255	615049	D	uncharacterized protein	join(614255..614311,614344..614410,614535..614644,614730..614884,614914..615049)	Theileria parva strain Muguga	3501843
TpMuguga_02g00309	CDS	TpMuguga_02g00309	NC_007345.1	617874	619832	D	uncharacterized protein	617874..619832	Theileria parva strain Muguga	3501753
TpMuguga_02g00310	CDS	ileS	NC_007345.1	620002	623883	R	isoleucine--tRNA ligase	complement(join(620002..620983,621083..621842,621993..622411,622473..622889,622994..623263,623310..623476,623621..623802,623844..623883))	Theileria parva strain Muguga	3501754
TpMuguga_02g00311	CDS	CPN21	NC_007345.1	624145	625476	D	Chaperonin 10 Kd subunit family protein	join(624145..624364,624395..624540,624673..624737,624938..625007,625041..625165,625206..625476)	Theileria parva strain Muguga	3501755
TpMuguga_02g00312	CDS	TRF5	NC_007345.1	625598	627588	D	Nucleotidyltransferase domain protein	join(625598..625783,625815..625935,625989..626143,626255..626324,626364..626543,626575..626642,626673..626923,626953..627034,627078..627152,627208..627588)	Theileria parva strain Muguga	3501756
TpMuguga_02g00313	CDS	trappc2	NC_007345.1	627722	628246	R	Sedlin domain protein	complement(627722..628246)	Theileria parva strain Muguga	3501757
TpMuguga_02g00314	CDS	TpMuguga_02g00314	NC_007345.1	628399	630531	R	uncharacterized protein	complement(628399..630531)	Theileria parva strain Muguga	3501653
TpMuguga_02g00315	CDS	TpMuguga_02g00315	NC_007345.1	631117	633178	D	uncharacterized protein	join(631117..632081,632113..632221,632274..632393,632424..632537,632568..632630,632686..632772,632802..632902,632935..633069,633100..633178)	Theileria parva strain Muguga	3501654
TpMuguga_02g02670	CDS	TpMuguga_02g02670	NC_007345.1	633146	633793	R	Transport protein particle (TRAPP) component family protein	complement(join(633146..633174,633211..633412,633450..633567,633600..633793))	Theileria parva strain Muguga	86047738
TpMuguga_02g00316	CDS	Ddx41	NC_007345.1	633855	635849	D	putative ATP-dependent RNA helicase DDX41	join(633855..634238,634277..634607,634638..634998,635120..635664,635704..635849)	Theileria parva strain Muguga	3501655
TpMuguga_02g00317	CDS	Rpl27a	NC_007345.1	636356	636830	D	60S ribosomal protein L27a-3	join(636356..636520,636552..636830)	Theileria parva strain Muguga	3501656
TpMuguga_02g00318	CDS	TpMuguga_02g00318	NC_007345.1	637040	639076	R	Nucleoporin FG repeat region family protein	complement(637040..639076)	Theileria parva strain Muguga	3501657
TpMuguga_02g00319	CDS	dtymk	NC_007345.1	639379	640238	R	Thymidylate kinase	complement(join(639379..639459,639494..639603,639638..639746,639780..639870,639910..640021,640065..640147,640183..640238))	Theileria parva strain Muguga	3501658
TpMuguga_02g00320	CDS	Cdk6	NC_007345.1	640528	642313	D	Protein kinase domain protein	join(640528..641453,641483..641649,641774..641907,641939..642313)	Theileria parva strain Muguga	3501647
TpMuguga_02g00321	CDS	TpMuguga_02g00321	NC_007345.1	642583	644434	D	uncharacterized protein	join(642583..642858,642899..644434)	Theileria parva strain Muguga	3501648
TpMuguga_02g02375	CDS	TpMuguga_02g02375	NC_007345.1	644552	645299	R	tyrosine phosphatase-like family protein	complement(join(644552..644772,644802..645026,645056..645299))	Theileria parva strain Muguga	86047714
TpMuguga_02g00322	CDS	glnS	NC_007345.1	645414	647481	R	glutamine--tRNA ligase	complement(join(645414..645905,646023..646151,646184..646316,646346..646528,646559..647481))	Theileria parva strain Muguga	3501649
TpMuguga_02g00323	CDS	RPL23C	NC_007345.1	648036	648543	D	60S ribosomal protein L23	join(648036..648045,648104..648219,648250..648543)	Theileria parva strain Muguga	3501650
TpMuguga_02g00324	CDS	sed5	NC_007345.1	648663	649677	R	SNARE domain protein	complement(join(648663..648716,648747..648808,648840..649030,649127..649677))	Theileria parva strain Muguga	3501651
TpMuguga_02g02045	CDS	Fra10ac1	NC_007345.1	649805	650346	D	Folate-sensitive fragile site protein Fra10Ac1 family protein	join(649805..649870,649908..650006,650043..650186,650216..650300,650333..650346)	Theileria parva strain Muguga	86047681
TpMuguga_02g02040	CDS	TpMuguga_02g02040	NC_007345.1	650369	651357	D	uncharacterized protein	join(650369..650422,650453..650599,650631..650711,650743..650861,650892..650943,650975..651087,651117..651178,651208..651262,651294..651357)	Theileria parva strain Muguga	3501652
TpMuguga_02g00326	CDS	TpMuguga_02g00326	NC_007345.1	651469	656853	D	LCCL domain protein	join(651469..651685,651716..651789,651819..651897,651951..652213,652249..652336,652421..652723,652755..654774,654861..655454,655487..655733,655835..655934,655965..656686,656719..656853)	Theileria parva strain Muguga	3502310
TpMuguga_02g00327	CDS	TpMuguga_02g00327	NC_007345.1	657130	657681	R	uncharacterized protein	complement(657130..657681)	Theileria parva strain Muguga	3502311
TpMuguga_02g00328	CDS	BRD1	NC_007345.1	658682	659860	R	Bromodomain protein	complement(658682..659860)	Theileria parva strain Muguga	3502312
TpMuguga_02g00329	CDS	ABD1	NC_007345.1	659947	662172	R	mRNA capping enzyme family protein	complement(join(659947..660416,660486..662172))	Theileria parva strain Muguga	3502313
TpMuguga_02g00330	CDS	TpMuguga_02g00330	NC_007345.1	662511	663152	D	emp24/gp25L/p24 family/GOLD family protein	662511..663152	Theileria parva strain Muguga	3502314
TpMuguga_02g00331	CDS	ptr3	NC_007345.1	663323	666823	R	ThiF family protein	complement(join(663323..664839,664929..665477,665509..666823))	Theileria parva strain Muguga	3502315
TpMuguga_02g00332	CDS	RH36	NC_007345.1	666992	668458	R	DEAD/DEAH box helicase family protein	complement(666992..668458)	Theileria parva strain Muguga	3501434
TpMuguga_02g00333	CDS	EIF6	NC_007345.1	668660	669514	D	Eukaryotic translation initiation factor 6	join(668660..668669,668701..668883,668926..669318,669351..669514)	Theileria parva strain Muguga	3501435
TpMuguga_02g00334	CDS	nfo	NC_007345.1	669629	671256	D	apurinic endonuclease (APN1) family protein	join(669629..669745,669843..670041,670071..670205,670252..670307,670337..670442,670476..670568,670600..670649,670681..670818,670855..670894,670961..671256)	Theileria parva strain Muguga	3501436
TpMuguga_02g00335	CDS	TpMuguga_02g00335	NC_007345.1	671536	672881	D	putative integral membrane protein	join(671536..671825,671864..672141,672171..672370,672401..672571,672602..672822,672857..672881)	Theileria parva strain Muguga	3501438
TpMuguga_02g02550	CDS	TpMuguga_02g02550	NC_007345.1	672902	673461	R	Regulator of volume decrease after cellular swelling family protein	complement(join(672902..672919,672950..673128,673158..673277,673311..673461))	Theileria parva strain Muguga	86047729
TpMuguga_02g00336	CDS	TpMuguga_02g00336	NC_007345.1	673605	674518	D	uncharacterized protein	join(673605..673939,673972..674018,674049..674191,674220..674349,674439..674518)	Theileria parva strain Muguga	3501439
TpMuguga_02g00337	CDS	UTP4	NC_007345.1	674528	677103	R	U3 small nucleolar RNA-associated protein 4	complement(join(674528..676726,676758..676913,676954..677103))	Theileria parva strain Muguga	3502355
TpMuguga_02g00338	CDS	ATG8	NC_007345.1	677810	678301	D	Autophagy protein Atg8 ubiquitin like family protein	join(677810..677849,677923..678028,678067..678301)	Theileria parva strain Muguga	3502356
TpMuguga_02g00339	CDS	mnmA	NC_007345.1	678409	680608	D	tRNA methyl transferase family protein	join(678409..679301,679331..679449,679480..679609,679639..679960,679991..680608)	Theileria parva strain Muguga	3502357
TpMuguga_02g00340	CDS	TpMuguga_02g00340	NC_007345.1	680774	682075	D	putative integral membrane protein	680774..682075	Theileria parva strain Muguga	3502358
TpMuguga_02g00341	CDS	TpMuguga_02g00341	NC_007345.1	682270	682838	R	putative integral membrane protein	complement(join(682270..682294,682324..682838))	Theileria parva strain Muguga	86047669
TpMuguga_02g00342	CDS	TpMuguga_02g00342	NC_007345.1	683016	684266	D	DnaJ domain protein	join(683016..683079,683111..683143,683176..683330,683361..683487,683529..683770,683801..684034,684065..684154,684186..684266)	Theileria parva strain Muguga	3502360
TpMuguga_02g00343	CDS	ADRM1	NC_007345.1	684274	684742	R	Proteasome complex subunit Rpn13 ubiquitin receptor family protein	complement(join(684274..684318,684348..684488,684523..684579,684635..684742))	Theileria parva strain Muguga	3502361
TpMuguga_02g00344	CDS	Usp42	NC_007345.1	684852	686867	R	Ubiquitin carboxyl-terminal hydrolase family protein	complement(684852..686867)	Theileria parva strain Muguga	3501628
TpMuguga_02g02270	CDS	TpMuguga_02g02270	NC_007345.1	687006	687452	D	uncharacterized protein	join(687006..687184,687215..687268,687298..687362,687394..687452)	Theileria parva strain Muguga	86047700
TpMuguga_02g00345	CDS	TpMuguga_02g00345	NC_007345.1	687794	688208	R	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 family protein	complement(join(687794..687812,687869..688056,688101..688208))	Theileria parva strain Muguga	3501629
TpMuguga_02g00346	CDS	TpMuguga_02g00346	NC_007345.1	688293	689512	R	Nop53 (60S ribosomal biogenesis) family protein	complement(join(688293..689159,689190..689341,689383..689512))	Theileria parva strain Muguga	86047670
TpMuguga_02g00347	CDS	rps9	NC_007345.1	689612	691606	R	Ribosomal protein S9/S16 family protein	complement(join(689612..691353,691386..691429,691473..691606))	Theileria parva strain Muguga	3501631
TpMuguga_02g00348	CDS	TpMuguga_02g00348	NC_007345.1	692242	693095	D	uncharacterized protein	join(692242..692856,692887..693041,693074..693095)	Theileria parva strain Muguga	3501632
TpMuguga_02g00349	CDS	TpMuguga_02g00349	NC_007345.1	693482	694920	D	Ring finger domain protein	join(693482..694268,694346..694747,694780..694828,694860..694920)	Theileria parva strain Muguga	3501633
TpMuguga_02g00350	CDS	gsp-2	NC_007345.1	695852	696883	D	Serine/threonine-protein phosphatase PP1-beta	join(695852..696257,696289..696752,696848..696883)	Theileria parva strain Muguga	3501743
TpMuguga_02g00351	CDS	TpMuguga_02g00351	NC_007345.1	697022	700930	R	ABC1 family protein	complement(join(697022..697126,697167..697339,697414..700930))	Theileria parva strain Muguga	3501744
TpMuguga_02g00352	CDS	CEG1	NC_007345.1	701212	702629	D	mRNA capping enzyme catalytic domain protein	join(701212..701360,701392..701596,701630..702016,702046..702120,702153..702226,702260..702629)	Theileria parva strain Muguga	3501745
TpMuguga_02g00353	CDS	TpMuguga_02g00353	NC_007345.1	703100	704525	D	Thioredoxin family protein	join(703100..703489,703519..703704,703806..704105,704166..704525)	Theileria parva strain Muguga	3501746
TpMuguga_02g00354	CDS	TpMuguga_02g00354	NC_007345.1	704956	706503	D	Alpha/beta hydrolase family protein	join(704956..705012,705056..705203,705358..705585,705615..705716,705750..705970,706000..706180,706256..706503)	Theileria parva strain Muguga	3501747
TpMuguga_02g00355	CDS	Pelo	NC_007345.1	706626	708087	R	mRNA surveillance protein pelota	complement(join(706626..706910,706952..707030,707077..707142,707175..707215,707246..707347,707381..707506,707537..707614,707647..707703,707735..707809,707841..707919,707954..708087))	Theileria parva strain Muguga	3501748
TpMuguga_02g00356	CDS	PAM18	NC_007345.1	708326	708749	D	chaperone protein DnaJ	join(708326..708552,708586..708659,708694..708749)	Theileria parva strain Muguga	3501877
TpMuguga_02g00357	CDS	TpMuguga_02g00357	NC_007345.1	708837	709509	R	uncharacterized protein	complement(join(708837..709045,709079..709193,709223..709408,709447..709509))	Theileria parva strain Muguga	3501878
TpMuguga_02g00358	CDS	pcid2	NC_007345.1	709670	711364	D	PCI domain protein	join(709670..709816,709851..710014,710044..710146,710209..710350,710382..710425,710456..710505,710536..710629,710657..710718,710760..710837,710867..710936,710967..711058,711100..711208,711245..711364)	Theileria parva strain Muguga	3501879
TpMuguga_02g00359	CDS	TpMuguga_02g00359	NC_007345.1	711470	711929	R	RNA polymerase Rpb4 family protein	complement(join(711470..711641,711677..711754,711787..711929))	Theileria parva strain Muguga	3501880
TpMuguga_02g00360	CDS	TpMuguga_02g00360	NC_007345.1	712225	715036	D	Nucleoporin FG repeat region family protein	join(712225..714310,714343..714387,714420..715036)	Theileria parva strain Muguga	3501881
TpMuguga_02g00361	CDS	LON1	NC_007345.1	715429	718776	D	endopeptidase La	715429..718776	Theileria parva strain Muguga	3502298
TpMuguga_02g00362	CDS	SmB	NC_007345.1	718939	719518	R	LSM domain protein	complement(join(718939..719232,719345..719518))	Theileria parva strain Muguga	3502299
TpMuguga_02g00363	CDS	TpMuguga_02g00363	NC_007345.1	719930	722862	R	uncharacterized protein	complement(join(719930..719991,720031..720073,720105..720184,720218..720475,720508..722469,722533..722631,722664..722862))	Theileria parva strain Muguga	3502300
TpMuguga_02g00364	CDS	dph1	NC_007345.1	723396	724830	D	diphthamide biosynthesis enzyme Dph1/Dph2 domain protein	join(723396..723656,723700..724218,724253..724498,724540..724702,724733..724830)	Theileria parva strain Muguga	3502301
TpMuguga_02g00365	CDS	TpMuguga_02g00365	NC_007345.1	725415	726290	R	YT521-B-like domain protein	complement(join(725415..725635,725669..726199,726233..726290))	Theileria parva strain Muguga	3502302
TpMuguga_02g00366	CDS	TpMuguga_02g00366	NC_007345.1	726708	728039	D	PWI domain protein	join(726708..726978,727180..727956,727990..728039)	Theileria parva strain Muguga	3502303
TpMuguga_02g02160	CDS	TpMuguga_02g02160	NC_007345.1	728164	728978	R	uncharacterized protein	complement(join(728164..728236,728266..728978))	Theileria parva strain Muguga	86047692
TpMuguga_02g02570	CDS	TpMuguga_02g02570	NC_007345.1	730012	731390	R	N2227-like family protein	complement(join(730012..730480,730512..730590,730621..730721,730771..730904,730953..731390))	Theileria parva strain Muguga	3502147
TpMuguga_02g00369	CDS	Dusp12	NC_007345.1	731727	732887	D	dual specificity phosphatase 12	join(731727..732148,732180..732230,732275..732887)	Theileria parva strain Muguga	3502148
TpMuguga_02g00370	CDS	RPP2A	NC_007345.1	733181	733577	R	60S acidic ribosomal protein P2A	complement(join(733181..733257,733290..733380,733413..733577))	Theileria parva strain Muguga	3502149
TpMuguga_02g00371	CDS	TpMuguga_02g00371	NC_007345.1	734013	734414	D	Proteasome maturation factor UMP1 family protein	734013..734414	Theileria parva strain Muguga	3502150
TpMuguga_02g00372	CDS	CPSF30	NC_007345.1	734517	735063	R	Cleavage and polyadenylation specificity factor CPSF30	complement(join(734517..734630,734662..735063))	Theileria parva strain Muguga	3502151
TpMuguga_02g00373	CDS	ung	NC_007345.1	735251	736329	D	uracil-DNA glycosylase	join(735251..735480,735517..735648,735677..735740,735801..735980,736010..736085,736122..736220,736250..736329)	Theileria parva strain Muguga	3502152
TpMuguga_02g00374	CDS	SF3B4	NC_007345.1	736359	737481	R	or RNP domain; RBD; RRM; RNA recognition motif family protein	complement(join(736359..736531,736566..736709,736740..736890,736920..737018,737048..737175,737207..737317,737415..737481))	Theileria parva strain Muguga	3501534
TpMuguga_02g00375	CDS	TpMuguga_02g00375	NC_007345.1	737829	738995	R	uncharacterized protein	complement(join(737829..737972,738006..738049,738149..738995))	Theileria parva strain Muguga	3501535
TpMuguga_02g00376	CDS	TpMuguga_02g00376	NC_007345.1	739954	741689	R	PCI domain protein	complement(join(739954..740249,740282..740361,740393..740502,740534..740647,740677..741170,741200..741689))	Theileria parva strain Muguga	3501537
TpMuguga_02g00377	CDS	TpMuguga_02g00377	NC_007345.1	742378	743029	D	or RNP domain; RBD; RRM; RNA recognition motif family protein	join(742378..742568,742600..743029)	Theileria parva strain Muguga	3501538
TpMuguga_02g00378	CDS	Prkaca	NC_007345.1	743384	744574	D	cAMP-dependent protein kinase catalytic subunit	join(743384..743390,743432..743584,743616..744258,744288..744447,744479..744574)	Theileria parva strain Muguga	3501539
TpMuguga_02g00379	CDS	TpMuguga_02g00379	NC_007345.1	745077	748295	D	uncharacterized protein	745077..748295	Theileria parva strain Muguga	3501980
TpMuguga_02g00380	CDS	Trub1	NC_007345.1	748336	749366	R	tRNA pseudouridine(55) synthase	complement(join(748336..748455,748486..748593,748625..748737,748769..748877,748908..748969,749010..749066,749097..749146,749179..749366))	Theileria parva strain Muguga	3501981
TpMuguga_02g00965	CDS	TpMuguga_02g00965	NC_007345.1	749479	750066	R	uncharacterized protein	complement(join(749479..749659,749709..749793,749859..749916,749950..750066))	Theileria parva strain Muguga	3501982
TpMuguga_02g00381	CDS	Lsm14b	NC_007345.1	750831	751826	D	Scd6-like Sm domain protein	join(750831..750897,750937..751071,751106..751590,751632..751826)	Theileria parva strain Muguga	3501983
TpMuguga_02g00382	CDS	TpMuguga_02g00382	NC_007345.1	752095	755846	D	uncharacterized protein	join(752095..755724,755790..755846)	Theileria parva strain Muguga	3501984
TpMuguga_02g00383	CDS	TpMuguga_02g00383	NC_007345.1	756004	757623	R	uncharacterized protein	complement(756004..757623)	Theileria parva strain Muguga	3501985
TpMuguga_02g00384	CDS	TpMuguga_02g00384	NC_007345.1	757702	758822	R	uncharacterized protein	complement(join(757702..757979,758009..758437,758468..758822))	Theileria parva strain Muguga	3501986
TpMuguga_02g02640	CDS	TpMuguga_02g02640	NC_007345.1	759640	762778	D	uncharacterized protein	join(759640..759664,759700..760484,760515..760796,760826..761328,761359..761401,761431..761750,761780..761903,761933..762189,762218..762350,762379..762460,762491..762580,762611..762671,762703..762778)	Theileria parva strain Muguga	3502026
TpMuguga_02g00388	CDS	ABCC13	NC_007345.1	763413	768035	D	ABC transporter family protein	join(763413..763951,764054..768035)	Theileria parva strain Muguga	3502029
TpMuguga_02g00389	CDS	TpMuguga_02g00389	NC_007345.1	768068	769825	R	Pre-mRNA splicing factor PRP21 like family protein	complement(join(768068..768090,768121..768157,768187..768254,768284..768345,768378..768532,768564..768755,768787..768894,768927..769302,769374..769557,769600..769825))	Theileria parva strain Muguga	3502030
TpMuguga_02g00390	CDS	ABCC4	NC_007345.1	770417	775012	D	ABC transporter family protein	770417..775012	Theileria parva strain Muguga	3502031
TpMuguga_02g00391	CDS	ABCC4	NC_007345.1	775630	780318	D	ABC transporter family protein	775630..780318	Theileria parva strain Muguga	3502042
TpMuguga_02g00392	CDS	rplT	NC_007345.1	780551	780946	R	Ribosomal protein L20 family protein	complement(join(780551..780769,780800..780946))	Theileria parva strain Muguga	3502043
TpMuguga_02g00393	CDS	SEC62	NC_007345.1	781263	782803	D	Translocation protein Sec62 family protein	join(781263..781277,781333..781416,781478..781561,781592..781699,781731..781767,781801..781940,781970..782050,782081..782276,782306..782413,782443..782544,782576..782658,782690..782803)	Theileria parva strain Muguga	3502044
TpMuguga_02g00394	CDS	TpMuguga_02g00394	NC_007345.1	782899	783795	D	uncharacterized protein	join(782899..783238,783269..783413,783597..783795)	Theileria parva strain Muguga	3502045
TpMuguga_02g00395	CDS	TpMuguga_02g00395	NC_007345.1	783759	785020	R	TLC domain protein	complement(join(783759..783781,783812..783884,783914..784186,784217..784454,784486..784605,784785..785020))	Theileria parva strain Muguga	3502046
TpMuguga_02g00396	CDS	TpMuguga_02g00396	NC_007345.1	785523	785958	R	Cytochrome c family protein	complement(join(785523..785671,785706..785801,785856..785958))	Theileria parva strain Muguga	3502047
TpMuguga_02g00397	CDS	TpMuguga_02g00397	NC_007345.1	786310	788057	D	putative integral membrane protein	join(786310..786853,786931..787165,787223..787399,787525..787678,787708..787842,787872..788057)	Theileria parva strain Muguga	3502215
TpMuguga_02g00398	CDS	TpMuguga_02g00398	NC_007345.1	788566	789708	D	uncharacterized protein	788566..789708	Theileria parva strain Muguga	3502216
TpMuguga_02g00399	CDS	CPK2	NC_007345.1	789880	792920	R	Protein kinase domain protein	complement(join(789880..789957,790062..790143,790173..790284,790423..791339,791575..792920))	Theileria parva strain Muguga	3502217
TpMuguga_02g00400	CDS	TpMuguga_02g00400	NC_007345.1	793984	794442	D	uncharacterized protein	793984..794442	Theileria parva strain Muguga	3502218
TpMuguga_02g00401	CDS	Osbpl1a	NC_007345.1	794898	799037	D	Oxysterol-binding family protein	join(794898..794977,795010..795113,795310..796649,796986..797285,797415..797519,797631..797824,797965..798139,798340..798650,798749..798851,798969..799037)	Theileria parva strain Muguga	3502219
TpMuguga_02g00402	CDS	ORC4	NC_007345.1	799210	801065	D	Archaeal ATPase family protein	join(799210..799986,800164..800310,800404..800586,800760..800911,800987..801065)	Theileria parva strain Muguga	3502153
TpMuguga_02g02175	CDS	TpMuguga_02g02175	NC_007345.1	801177	801479	D	uncharacterized protein	801177..801479	Theileria parva strain Muguga	86047693
TpMuguga_02g00403	CDS	TpMuguga_02g00403	NC_007345.1	801617	803815	R	Myb-like DNA-binding domain protein	complement(801617..803815)	Theileria parva strain Muguga	3502154
TpMuguga_02g00404	CDS	TpMuguga_02g00404	NC_007345.1	804267	806380	R	Tetratricopeptide repeat family protein	complement(join(804267..804457,804513..804753,804835..804947,804977..805043,805154..805239,805269..805451,805566..805674,805760..805924,806006..806173,806222..806380))	Theileria parva strain Muguga	3502155
TpMuguga_02g00405	CDS	TpMuguga_02g00405	NC_007345.1	806812	812318	D	Regulator of chromosome condensation (RCC1) repeat family protein	join(806812..806827,806857..806959,807013..807391,807428..807603,807636..807852,807916..808540,808588..808665,808793..808923,809027..809074,809104..809163,809255..809696,809945..810942,811026..812318)	Theileria parva strain Muguga	3502156
TpMuguga_02g00406	CDS	TpMuguga_02g00406	NC_007345.1	812433	813347	D	Protein similar to CwfJ C-terminus 1 family protein	812433..813347	Theileria parva strain Muguga	3502157
TpMuguga_02g00407	CDS	TpMuguga_02g00407	NC_007345.1	813438	814181	R	uncharacterized protein	complement(813438..814181)	Theileria parva strain Muguga	3502158
TpMuguga_02g00408	CDS	TpMuguga_02g00408	NC_007345.1	814343	815359	R	uncharacterized protein	complement(join(814343..814566,814617..814724,814837..815359))	Theileria parva strain Muguga	3501994
TpMuguga_02g00409	CDS	CDC40	NC_007345.1	815470	817470	R	WD domain G-beta repeat protein	complement(815470..817470)	Theileria parva strain Muguga	3501995
TpMuguga_02g02560	CDS	TpMuguga_02g02560	NC_007345.1	818531	821788	D	uncharacterized protein	join(818531..820261,820725..820998,821076..821173,821279..821512,821642..821788)	Theileria parva strain Muguga	3501997
TpMuguga_02g00412	CDS	TpMuguga_02g00412	NC_007345.1	822263	824427	R	Eukaryotic-type carbonic anhydrase family protein	complement(join(822263..823176,823241..824005,824184..824427))	Theileria parva strain Muguga	3501998
TpMuguga_02g00413	CDS	CTNNBL1	NC_007345.1	824875	828528	R	beta-catenin-like protein 1	complement(join(824875..824981,825545..825862,825892..825948,826018..826103,826238..826390,826631..826680,826779..827095,827208..827262,827293..827387,828105..828244,828374..828528))	Theileria parva strain Muguga	3501999
TpMuguga_02g00414	CDS	TpMuguga_02g00414	NC_007345.1	828838	832231	D	DnaJ domain protein	join(828838..831104,831922..832231)	Theileria parva strain Muguga	3501987
TpMuguga_02g00415	CDS	TpMuguga_02g00415	NC_007345.1	832581	833216	D	putative integral membrane protein	832581..833216	Theileria parva strain Muguga	3501988
TpMuguga_02g00416	CDS	APS2	NC_007345.1	834233	834741	R	AP-2 complex subunit sigma	complement(join(834233..834605,834686..834741))	Theileria parva strain Muguga	3501989
TpMuguga_02g00417	CDS	TpMuguga_02g00417	NC_007345.1	835213	836608	D	putative integral membrane protein	join(835213..835512,836288..836608)	Theileria parva strain Muguga	3501990
TpMuguga_02g00418	CDS	TpMuguga_02g00418	NC_007345.1	836945	839924	D	uncharacterized protein	join(836945..837329,838357..839924)	Theileria parva strain Muguga	3501991
TpMuguga_02g00419	CDS	TpMuguga_02g00419	NC_007345.1	840110	841439	D	putative integral membrane protein	join(840110..840164,840466..841439)	Theileria parva strain Muguga	3501992
TpMuguga_02g00420	CDS	TpMuguga_02g00420	NC_007345.1	842570	847831	R	uncharacterized protein	complement(842570..847831)	Theileria parva strain Muguga	3501993
TpMuguga_02g00421	CDS	TpMuguga_02g00421	NC_007345.1	847995	849698	R	uncharacterized protein	complement(847995..849698)	Theileria parva strain Muguga	3501844
TpMuguga_02g00422	CDS	ndk	NC_007345.1	850159	850709	D	Nucleoside diphosphate kinase	join(850159..850426,850528..850709)	Theileria parva strain Muguga	3501845
TpMuguga_02g00423	CDS	srpr	NC_007345.1	851157	853337	R	signal recognition particle receptor subunit alpha	complement(join(851157..852662,853005..853100,853200..853337))	Theileria parva strain Muguga	3501846
TpMuguga_02g00424	CDS	TpMuguga_02g00424	NC_007345.1	854631	856373	D	uncharacterized protein	854631..856373	Theileria parva strain Muguga	3501847
TpMuguga_02g00425	CDS	TpMuguga_02g00425	NC_007345.1	856492	859062	R	SEP domain protein	complement(join(856492..857015,857087..857161,858042..858812,858892..858951,858999..859062))	Theileria parva strain Muguga	3501848
TpMuguga_02g00426	CDS	TpMuguga_02g00426	NC_007345.1	859511	859859	D	uncharacterized protein	join(859511..859624,859704..859859)	Theileria parva strain Muguga	3501849
TpMuguga_02g00427	CDS	TpMuguga_02g00427	NC_007345.1	860005	860532	R	putative integral membrane protein	complement(860005..860532)	Theileria parva strain Muguga	3501850
TpMuguga_02g00428	CDS	TpMuguga_02g00428	NC_007345.1	860771	861708	D	uncharacterized protein	join(860771..860948,861155..861708)	Theileria parva strain Muguga	3501567
TpMuguga_02g00429	CDS	tma22	NC_007345.1	861867	862531	R	Translation initiation factor SUI1 family protein	complement(join(861867..861962,861993..862096,862171..862531))	Theileria parva strain Muguga	3501568
TpMuguga_02g00430	CDS	AFG3L2	NC_007345.1	862786	865725	R	Peptidase family M41 family protein	complement(join(862786..864468,864690..864902,864976..865725))	Theileria parva strain Muguga	3501569
TpMuguga_02g00431	CDS	ddx55	NC_007345.1	866181	868744	D	DEAD/DEAH box helicase family protein	join(866181..867884,867915..868007,868037..868106,868183..868417,868448..868553,868646..868744)	Theileria parva strain Muguga	3501570
TpMuguga_02g00432	CDS	TpMuguga_02g00432	NC_007345.1	869271	870536	D	uncharacterized protein	join(869271..869978,870011..870490,870522..870536)	Theileria parva strain Muguga	3501571
TpMuguga_02g00433	CDS	UBA5	NC_007345.1	870757	871895	D	ThiF family protein	join(870757..871011,871104..871895)	Theileria parva strain Muguga	3501572
TpMuguga_02g00434	CDS	TpMuguga_02g00434	NC_007345.1	872068	873093	D	uncharacterized protein	join(872068..872216,872338..872411,872451..872553,872586..872668,872768..873093)	Theileria parva strain Muguga	3501416
TpMuguga_02g00435	CDS	hisS	NC_007345.1	873220	875211	R	Histidyl-tRNA synthetase family protein	complement(join(873220..873291,873321..873434,873465..873669,873712..873787,873824..873932,873997..874060,874100..874386,874447..874508,874541..874775,874809..874901,874972..875100,875131..875211))	Theileria parva strain Muguga	3501417
TpMuguga_02g00436	CDS	eif2a	NC_007345.1	875226	877664	R	Eukaryotic translation initiation factor eIF2A family protein	complement(875226..877664)	Theileria parva strain Muguga	3501418
TpMuguga_02g00437	CDS	udp	NC_007345.1	878588	879358	R	Uridine phosphorylase	complement(878588..879358)	Theileria parva strain Muguga	3501419
TpMuguga_02g00438	CDS	udp	NC_007345.1	879794	880558	R	Uridine phosphorylase	complement(879794..880558)	Theileria parva strain Muguga	3501420
TpMuguga_02g00439	CDS	TpMuguga_02g00439	NC_007345.1	880678	881525	D	uncharacterized protein	join(880678..880698,880731..881525)	Theileria parva strain Muguga	3501421
TpMuguga_02g00440	CDS	udp	NC_007345.1	881708	882472	R	Uridine phosphorylase	complement(881708..882472)	Theileria parva strain Muguga	3501422
TpMuguga_02g00441	CDS	ppan	NC_007345.1	882689	883959	R	Brix domain protein	complement(join(882689..882894,882927..882997,883030..883379,883414..883959))	Theileria parva strain Muguga	3502220
TpMuguga_02g00442	CDS	TpMuguga_02g00442	NC_007345.1	884235	885124	R	uncharacterized protein	complement(join(884235..884731,884764..885124))	Theileria parva strain Muguga	3502221
TpMuguga_02g00443	CDS	ssb1	NC_007345.1	885394	887083	D	Replication factor-A C terminal domain protein	join(885394..885537,885571..885642,885674..885813,885843..885945,885977..886072,886107..886289,886330..886610,886640..886707,886740..886831,886862..887083)	Theileria parva strain Muguga	3502222
TpMuguga_02g00444	CDS	Dph6	NC_007345.1	887263	888214	D	Diphthine--ammonia ligase	join(887263..887482,887517..887605,887647..887723,887755..887873,887904..887965,888000..888091,888124..888214)	Theileria parva strain Muguga	3502223
TpMuguga_02g00445	CDS	VHA-F	NC_007345.1	888949	889409	D	V-type ATPase F subunit	join(888949..889002,889064..889145,889180..889409)	Theileria parva strain Muguga	3502224
TpMuguga_02g00446	CDS	Zdhhc15	NC_007345.1	889474	890718	R	DHHC palmitoyltransferase family protein	complement(join(889474..889634,889665..889911,889942..890718))	Theileria parva strain Muguga	3502271
TpMuguga_02g00447	CDS	TpMuguga_02g00447	NC_007345.1	890959	892526	R	uncharacterized protein	complement(join(890959..891057,891090..891236,891279..891611,891645..891873,891903..891984,892016..892316,892350..892412,892461..892526))	Theileria parva strain Muguga	3502272
TpMuguga_02g02115	CDS	TpMuguga_02g02115	NC_007345.1	892805	894230	R	uncharacterized protein	complement(join(892805..892903,892934..893101,893133..893242,893274..893358,893390..893554,893587..893901,893932..894158,894188..894230))	Theileria parva strain Muguga	86047690
TpMuguga_02g00448	CDS	Tbl1xr1	NC_007345.1	894496	896306	D	LisH family protein	join(894496..894560,894605..894948,895025..895238,895268..896306)	Theileria parva strain Muguga	3502273
TpMuguga_02g00449	CDS	TpMuguga_02g00449	NC_007345.1	896740	898982	D	DNA replication factor CDT1 like family protein	join(896740..898777,898810..898982)	Theileria parva strain Muguga	3502274
TpMuguga_02g00450	CDS	DTC	NC_007345.1	899317	900255	D	oxoglutarate/malate translocator	899317..900255	Theileria parva strain Muguga	3502275
TpMuguga_02g00451	CDS	obg	NC_007345.1	900322	901479	R	uncharacterized protein	complement(join(900322..901051,901082..901479))	Theileria parva strain Muguga	3502276
TpMuguga_02g02660	CDS	TpMuguga_02g02660	NC_007345.1	901712	903195	D	Ubiquinol-cytochrome C chaperone family protein	join(901712..902015,902055..902274,902314..902393,902512..902678,902710..902840,902878..903000,903031..903104,903137..903195)	Theileria parva strain Muguga	3502277
TpMuguga_02g02510	CDS	TpMuguga_02g02510	NC_007345.1	904587	906450	D	putative integral membrane protein	join(904587..904946,904996..905086,905121..905387,905421..905717,905779..905953,906069..906450)	Theileria parva strain Muguga	3502372
TpMuguga_02g02120	CDS	PAN2	NC_007345.1	906473	910326	R	Exonuclease family protein	complement(join(906473..906560,906774..907094,907126..907224,907258..907778,907903..910326))	Theileria parva strain Muguga	3502373
TpMuguga_02g02135	CDS	sand	NC_007345.1	910913	912521	D	Trafficking protein Mon1 family protein	join(910913..910965,911040..911074,911108..911304,911392..911621,911652..911725,911760..911853,911885..912266,912354..912521)	Theileria parva strain Muguga	3502375
TpMuguga_02g00460	CDS	ABCB25	NC_007345.1	912737	915092	R	ABC transporter family protein	complement(join(912737..912946,913019..913228,913271..913373,913447..915092))	Theileria parva strain Muguga	3501466
TpMuguga_02g02110	CDS	TpMuguga_02g02110	NC_007345.1	915901	916980	R	uncharacterized protein	complement(join(915901..916036,916068..916125,916155..916518,916545..916873,916914..916980))	Theileria parva strain Muguga	3501467
TpMuguga_02g02105	CDS	TpMuguga_02g02105	NC_007345.1	916989	917793	R	uncharacterized protein	complement(join(916989..917020,917081..917152,917212..917385,917497..917645,917678..917793))	Theileria parva strain Muguga	86047689
TpMuguga_02g00462	CDS	TpMuguga_02g00462	NC_007345.1	919336	921450	D	Protein kinase domain protein	join(919336..920365,920418..920648,920741..921450)	Theileria parva strain Muguga	3501468
TpMuguga_02g00463	CDS	rcd1	NC_007345.1	921775	922991	D	Cell differentiation protein rcd1	join(921775..922094,922129..922244,922276..922382,922413..922508,922617..922855,922886..922991)	Theileria parva strain Muguga	3501469
TpMuguga_02g02480	CDS	TpMuguga_02g02480	NC_007345.1	923111	923377	R	uncharacterized protein	complement(923111..923377)	Theileria parva strain Muguga	86047724
TpMuguga_02g00464	CDS	TpMuguga_02g00464	NC_007345.1	923811	925292	R	tubulin subunit beta	complement(join(923811..925037,925197..925292))	Theileria parva strain Muguga	3501470
TpMuguga_02g00465	CDS	TpMuguga_02g00465	NC_007345.1	925846	926880	R	FHA domain protein	complement(925846..926880)	Theileria parva strain Muguga	3501523
TpMuguga_02g00466	CDS	TpMuguga_02g00466	NC_007345.1	926915	928411	R	uncharacterized protein	complement(926915..928411)	Theileria parva strain Muguga	3501524
TpMuguga_02g00467	CDS	TOP2	NC_007345.1	928505	932771	R	DNA gyrase/topoisomerase IV subunit A family protein	complement(join(928505..930859,930922..931632,931701..932771))	Theileria parva strain Muguga	3501525
TpMuguga_02g00468	CDS	TpMuguga_02g00468	NC_007345.1	933160	935528	R	uncharacterized protein	complement(join(933160..934947,934977..935126,935167..935433,935478..935528))	Theileria parva strain Muguga	3501526
TpMuguga_02g02390	CDS	TpMuguga_02g02390	NC_007345.1	936114	936558	D	putative integral membrane protein	join(936114..936238,936271..936358,936403..936558)	Theileria parva strain Muguga	86047716
TpMuguga_02g00469	CDS	POLD2	NC_007345.1	936657	938480	D	DNA polymerase alpha/epsilon subunit B family protein	join(936657..936881,936939..937028,937070..937186,937227..937362,937403..937475,937509..937580,937649..937716,937786..937910,937996..938065,938095..938155,938261..938480)	Theileria parva strain Muguga	3501527
TpMuguga_02g00470	CDS	TpMuguga_02g00470	NC_007345.1	938740	939550	D	uncharacterized protein	join(938740..938868,938930..939550)	Theileria parva strain Muguga	3501528
TpMuguga_02g00471	CDS	TYW5	NC_007345.1	939668	940857	R	Cupin-like domain protein	complement(join(939668..939903,939974..940118,940154..940252,940285..940700,940779..940857))	Theileria parva strain Muguga	3501926
TpMuguga_02g00472	CDS	TpMuguga_02g00472	NC_007345.1	940965	941702	R	uncharacterized protein	complement(940965..941702)	Theileria parva strain Muguga	3501927
TpMuguga_02g00473	CDS	TpMuguga_02g00473	NC_007345.1	942580	942834	D	putative integral membrane protein	join(942580..942708,942763..942834)	Theileria parva strain Muguga	3501928
TpMuguga_02g00474	CDS	TpMuguga_02g00474	NC_007345.1	942956	943723	D	uncharacterized protein	join(942956..943031,943172..943347,943407..943508,943550..943723)	Theileria parva strain Muguga	3501929
TpMuguga_02g00475	CDS	dgkA	NC_007345.1	944263	945904	D	Diacylglycerol kinase accessory domain protein	join(944263..944328,944425..944563,944592..944708,944748..944820,944851..944974,945009..945149,945210..945449,945541..945639,945698..945793,945824..945904)	Theileria parva strain Muguga	3501930
TpMuguga_02g00476	CDS	clf1	NC_007345.1	945965	948390	D	Suppressor of forked protein (Suf) family protein	join(945965..945994,946029..946162,946229..946336,946401..946625,946707..946805,946840..947515,947581..947754,947825..948028,948067..948390)	Theileria parva strain Muguga	3501931
TpMuguga_02g00477	CDS	TpMuguga_02g00477	NC_007345.1	948930	950342	D	uncharacterized protein	948930..950342	Theileria parva strain Muguga	3501932
TpMuguga_02g00478	CDS	TpMuguga_02g00478	NC_007345.1	950418	951084	R	uncharacterized protein	complement(join(950418..950546,950579..950635,950666..950743,950774..950827,950862..950926,950980..951000,951036..951084))	Theileria parva strain Muguga	3501933
TpMuguga_02g02350	CDS	TpMuguga_02g02350	NC_007345.1	951149	951941	R	uncharacterized protein	complement(join(951149..951439,951481..951709,951754..951941))	Theileria parva strain Muguga	86047712
TpMuguga_02g00479	CDS	TpMuguga_02g00479	NC_007345.1	952018	953058	D	uncharacterized protein	952018..953058	Theileria parva strain Muguga	3501934
TpMuguga_02g00480	CDS	SF3B5	NC_007345.1	953153	953531	R	Splicing factor 3B subunit 5	complement(join(953153..953221,953262..953385,953440..953531))	Theileria parva strain Muguga	3501935
TpMuguga_02g00481	CDS	TpMuguga_02g00481	NC_007345.1	953704	958188	D	putative integral membrane protein	join(953704..953907,953977..954082,954114..956538,956660..956756,956823..957009,957072..957190,957222..957389,957419..957556,957588..957723,957761..958188)	Theileria parva strain Muguga	3501936
TpMuguga_02g00482	CDS	TpMuguga_02g00482	NC_007345.1	958458	958867	D	putative integral membrane protein	join(958458..958694,958727..958867)	Theileria parva strain Muguga	3502067
TpMuguga_02g00483	CDS	TpMuguga_02g00483	NC_007345.1	958943	960128	R	Leo1-like family protein	complement(join(958943..959029,959100..960128))	Theileria parva strain Muguga	3502068
TpMuguga_02g00484	CDS	TpMuguga_02g00484	NC_007345.1	960350	961238	D	uncharacterized protein	join(960350..960937,960972..961238)	Theileria parva strain Muguga	3502069
TpMuguga_02g00485	CDS	TpMuguga_02g00485	NC_007345.1	961295	962841	R	RAP domain protein	complement(join(961295..961571,961604..961824,961924..962841))	Theileria parva strain Muguga	3502070
TpMuguga_02g00486	CDS	TpMuguga_02g00486	NC_007345.1	963393	964269	D	CS domain protein	join(963393..963397,963498..963797,963876..963937,963986..964269)	Theileria parva strain Muguga	3502071
TpMuguga_02g00487	CDS	Rps6	NC_007345.1	964618	965274	D	40S ribosomal protein S6	964618..965274	Theileria parva strain Muguga	3502072
TpMuguga_02g00488	CDS	ATP6V1D	NC_007345.1	965553	966637	D	V-type proton ATPase subunit D	join(965553..965596,965641..965758,965825..966020,966077..966180,966247..966312,966347..966426,966529..966637)	Theileria parva strain Muguga	3502073
TpMuguga_02g00489	CDS	TpMuguga_02g00489	NC_007345.1	966948	968113	D	uncharacterized protein	join(966948..967175,967247..968113)	Theileria parva strain Muguga	3502343
TpMuguga_02g00490	CDS	Sec63	NC_007345.1	968344	970593	D	uncharacterized protein	join(968344..968713,968802..969001,969076..969152,969195..969310,969377..970593)	Theileria parva strain Muguga	3502344
TpMuguga_02g00491	CDS	TpMuguga_02g00491	NC_007345.1	970785	971720	D	uncharacterized protein	970785..971720	Theileria parva strain Muguga	3502345
TpMuguga_02g00492	CDS	TpMuguga_02g00492	NC_007345.1	971780	972964	R	uncharacterized protein	complement(971780..972964)	Theileria parva strain Muguga	3502346
TpMuguga_02g00493	CDS	tmem184A	NC_007345.1	973381	974669	D	Organic solute transporter Ostalpha family protein	join(973381..973552,973648..974669)	Theileria parva strain Muguga	3502347
TpMuguga_02g00494	CDS	pkaR	NC_007345.1	974709	976086	R	Cyclic nucleotide-binding domain protein	complement(join(974709..974864,974895..974959,975030..975352,975404..975471,975552..975639,975670..975728,975795..975863,975898..975987,976054..976086))	Theileria parva strain Muguga	3502348
TpMuguga_02g00495	CDS	TpMuguga_02g00495	NC_007345.1	976884	977538	D	putative integral membrane protein	join(976884..977018,977111..977150,977181..977379,977433..977538)	Theileria parva strain Muguga	3501960
TpMuguga_02g00496	CDS	TpMuguga_02g00496	NC_007345.1	977671	978410	R	uncharacterized protein	complement(join(977671..977918,978005..978410))	Theileria parva strain Muguga	3501961
TpMuguga_02g00497	CDS	TpMuguga_02g00497	NC_007345.1	980245	982068	D	uncharacterized protein	980245..982068	Theileria parva strain Muguga	3501962
TpMuguga_02g00498	CDS	dbp4	NC_007345.1	982241	984299	R	DEAD/DEAH box helicase family protein	complement(join(982241..983673,983734..984028,984081..984299))	Theileria parva strain Muguga	3501963
TpMuguga_02g00499	CDS	TpMuguga_02g00499	NC_007345.1	984978	987184	D	Chromatin assembly factor 1 subunit A family protein	join(984978..985056,985097..985188,985243..985821,985925..987184)	Theileria parva strain Muguga	3501964
TpMuguga_02g00500	CDS	slc20a1b	NC_007345.1	987342	989582	R	Phosphate transporter family protein	complement(987342..989582)	Theileria parva strain Muguga	3501965
TpMuguga_02g00501	CDS	TpMuguga_02g00501	NC_007345.1	989862	990259	D	uncharacterized protein	join(989862..990068,990218..990259)	Theileria parva strain Muguga	3501966
TpMuguga_02g00502	CDS	TpMuguga_02g00502	NC_007345.1	990453	990816	D	uncharacterized protein	join(990453..990663,990728..990816)	Theileria parva strain Muguga	3501863
TpMuguga_02g00503	CDS	TpMuguga_02g00503	NC_007345.1	990931	999477	D	Cyclic nucleotide-binding domain protein	990931..999477	Theileria parva strain Muguga	3501864
TpMuguga_02g00504	CDS	TpMuguga_02g00504	NC_007345.1	999721	1003208	R	HSA family protein	complement(join(999721..1003058,1003130..1003208))	Theileria parva strain Muguga	3501865
TpMuguga_02g00505	CDS	cpr-1	NC_007345.1	1003410	1004782	R	Peptidase family C54 family protein	complement(join(1003410..1003517,1003548..1003664,1003838..1004024,1004054..1004079,1004168..1004782))	Theileria parva strain Muguga	3501866
TpMuguga_02g02210	CDS	TpMuguga_02g02210	NC_007345.1	1005385	1012806	R	uncharacterized protein	complement(1005385..1012806)	Theileria parva strain Muguga	3501867
TpMuguga_02g00508	CDS	CBF5	NC_007345.1	1013724	1015234	D	H/ACA ribonucleoprotein complex subunit CBF5	join(1013724..1013807,1013925..1014201,1014266..1014330,1014395..1015234)	Theileria parva strain Muguga	3501869
TpMuguga_02g00509	CDS	RECQL4A	NC_007345.1	1015346	1018342	R	ATP-dependent DNA helicase RecQ family protein	complement(1015346..1018342)	Theileria parva strain Muguga	3501685
TpMuguga_02g00510	CDS	DTX3L	NC_007345.1	1018730	1019785	R	E3 ubiquitin-protein ligase DTX3L	complement(1018730..1019785)	Theileria parva strain Muguga	3501686
TpMuguga_02g00511	CDS	prp45	NC_007345.1	1020886	1022744	D	SKIP/SNW domain protein	join(1020886..1020902,1021004..1021115,1021201..1021479,1021580..1022296,1022364..1022479,1022618..1022744)	Theileria parva strain Muguga	3501687
TpMuguga_02g00512	CDS	TpMuguga_02g00512	NC_007345.1	1022776	1026786	R	Guanylate-binding protein domain protein	complement(1022776..1026786)	Theileria parva strain Muguga	3501688
TpMuguga_02g00513	CDS	TpMuguga_02g00513	NC_007345.1	1027190	1028382	R	uncharacterized protein	complement(join(1027190..1027336,1027531..1028171,1028271..1028382))	Theileria parva strain Muguga	3501689
TpMuguga_02g00514	CDS	CAJ1	NC_007345.1	1029827	1031288	D	X-domain of DnaJ-containing family protein	join(1029827..1030259,1030291..1031288)	Theileria parva strain Muguga	3501690
TpMuguga_02g00515	CDS	Alg13	NC_007345.1	1031379	1031885	R	Glycosyltransferase family 28 domain protein	complement(1031379..1031885)	Theileria parva strain Muguga	3501691
TpMuguga_02g00516	CDS	crop	NC_007345.1	1032068	1033591	R	LUC7 N_terminus family protein	complement(join(1032068..1032422,1032503..1032620,1032717..1032879,1032954..1033049,1033081..1033192,1033312..1033364,1033445..1033591))	Theileria parva strain Muguga	3501692
TpMuguga_02g00517	CDS	SKIV2L2	NC_007345.1	1033935	1037632	R	DSHCT (NUC185) domain protein	complement(join(1033935..1034070,1034159..1034343,1034379..1034724,1034756..1034833,1034941..1035251,1035396..1035838,1035972..1037459,1037584..1037632))	Theileria parva strain Muguga	3501506
TpMuguga_02g00518	CDS	TpMuguga_02g00518	NC_007345.1	1037768	1041478	R	uncharacterized protein	complement(join(1037768..1037943,1038009..1038063,1038094..1038153,1038184..1038311,1038368..1038934,1038996..1040915,1040965..1041478))	Theileria parva strain Muguga	3501507
TpMuguga_02g00519	CDS	TpMuguga_02g00519	NC_007345.1	1041580	1042174	R	uncharacterized protein	complement(join(1041580..1041838,1041870..1042174))	Theileria parva strain Muguga	3501508
TpMuguga_02g00520	CDS	TpMuguga_02g00520	NC_007345.1	1042277	1043537	R	CDK-activating kinase assembly factor MAT1 family protein	complement(join(1042277..1042338,1042368..1042411,1042450..1042508,1042600..1042668,1042697..1042810,1042905..1043017,1043049..1043122,1043178..1043310,1043344..1043369,1043449..1043537))	Theileria parva strain Muguga	3501509
TpMuguga_02g02415	CDS	MYOF	NC_007345.1	1043969	1048613	D	C2 domain protein	join(1043969..1044355,1044467..1044802,1044886..1045021,1045102..1045452,1045542..1045876,1045951..1047244,1047349..1048613)	Theileria parva strain Muguga	3501511
TpMuguga_02g02380	CDS	TpMuguga_02g02380	NC_007345.1	1048752	1049411	R	uncharacterized protein	complement(1048752..1049411)	Theileria parva strain Muguga	86047715
TpMuguga_02g00524	CDS	ATP6	NC_007345.1	1049649	1053637	R	HAD ATPase P-type family IC family protein	complement(join(1049649..1052308,1052464..1053637))	Theileria parva strain Muguga	3501513
TpMuguga_02g00525	CDS	TpMuguga_02g00525	NC_007345.1	1054289	1057225	D	N2-dimethylguanosine tRNA methyltransferase family protein	join(1054289..1054502,1054549..1054611,1055511..1056661,1056692..1056774,1056836..1056997,1057099..1057225)	Theileria parva strain Muguga	3501514
TpMuguga_02g00526	CDS	TpMuguga_02g00526	NC_007345.1	1057879	1059522	R	uncharacterized protein	complement(1057879..1059522)	Theileria parva strain Muguga	3501515
TpMuguga_02g00527	CDS	TpMuguga_02g00527	NC_007345.1	1060822	1062471	R	uncharacterized protein	complement(1060822..1062471)	Theileria parva strain Muguga	3501516
TpMuguga_02g00528	CDS	TpMuguga_02g00528	NC_007345.1	1064013	1065785	D	putative integral membrane protein	join(1064013..1064829,1064901..1065686,1065730..1065785)	Theileria parva strain Muguga	3501477
TpMuguga_02g00529	CDS	TpMuguga_02g00529	NC_007345.1	1065788	1066559	R	putative integral membrane protein	complement(join(1065788..1065933,1066029..1066125,1066165..1066220,1066270..1066335,1066403..1066559))	Theileria parva strain Muguga	3501478
TpMuguga_02g00530	CDS	UFD1L	NC_007345.1	1066911	1068178	D	Ubiquitin recognition factor in ER-associated degradation protein 1	join(1066911..1067043,1067118..1067272,1067480..1067610,1067675..1067768,1067834..1068055,1068116..1068178)	Theileria parva strain Muguga	3501479
TpMuguga_02g00531	CDS	TpMuguga_02g00531	NC_007345.1	1068349	1069082	D	uncharacterized protein	join(1068349..1068473,1068540..1068596,1068629..1068713,1068900..1069082)	Theileria parva strain Muguga	3501480
TpMuguga_02g00532	CDS	mcm2	NC_007345.1	1069153	1073088	R	MCM2/3/5 family protein	complement(join(1069153..1069451,1069558..1070349,1070716..1071558,1071769..1072103,1072309..1072861,1073021..1073054,1073086..1073088))	Theileria parva strain Muguga	3501481
TpMuguga_02g00533	CDS	TpMuguga_02g00533	NC_007345.1	1073299	1074524	R	uncharacterized protein	complement(join(1073299..1073327,1073393..1073466,1073619..1073736,1073923..1074398,1074469..1074524))	Theileria parva strain Muguga	3502240
TpMuguga_02g00534	CDS	TpMuguga_02g00534	NC_007345.1	1074822	1075718	R	uncharacterized protein	complement(1074822..1075718)	Theileria parva strain Muguga	3502241
TpMuguga_02g02190	CDS	TpMuguga_02g02190	NC_007345.1	1076564	1076932	R	uncharacterized protein	complement(1076564..1076932)	Theileria parva strain Muguga	86047694
TpMuguga_02g02370	CDS	TpMuguga_02g02370	NC_007345.1	1077178	1078095	D	uncharacterized protein	1077178..1078095	Theileria parva strain Muguga	86047713
TpMuguga_02g00535	CDS	TpMuguga_02g00535	NC_007345.1	1078699	1079922	D	uncharacterized protein	1078699..1079922	Theileria parva strain Muguga	3502242
TpMuguga_02g00536	CDS	TpMuguga_02g00536	NC_007345.1	1080263	1082384	R	uncharacterized protein	complement(join(1080263..1080312,1080341..1080577,1080643..1080739,1080776..1080817,1080848..1080955,1081093..1081285,1081321..1081327,1081358..1081409,1081453..1081508,1081605..1081695,1081742..1081839,1081902..1081959,1081990..1082023,1082094..1082203,1082268..1082384))	Theileria parva strain Muguga	3502243
TpMuguga_02g00537	CDS	TpMuguga_02g00537	NC_007345.1	1082633	1084222	D	5'-3' exonuclease N-terminal resolvase-like domain protein	join(1082633..1083677,1083758..1083885,1083983..1084222)	Theileria parva strain Muguga	3502244
TpMuguga_02g00538	CDS	TpMuguga_02g00538	NC_007345.1	1084333	1089309	R	Sel1 repeat family protein	complement(join(1084333..1086017,1086166..1089061,1089208..1089309))	Theileria parva strain Muguga	3502245
TpMuguga_02g00539	CDS	SF3B6	NC_007345.1	1090081	1090538	D	Splicing factor 3B subunit 6	join(1090081..1090154,1090184..1090261,1090293..1090397,1090427..1090538)	Theileria parva strain Muguga	3502246
TpMuguga_02g00540	CDS	TpMuguga_02g00540	NC_007345.1	1090606	1091410	R	uncharacterized protein	complement(join(1090606..1090757,1090794..1091107,1091139..1091410))	Theileria parva strain Muguga	3502330
TpMuguga_02g02655	CDS	TpMuguga_02g02655	NC_007345.1	1091899	1092945	D	uncharacterized protein	join(1091899..1092774,1092871..1092945)	Theileria parva strain Muguga	86047736
TpMuguga_02g00541	CDS	ileS	NC_007345.1	1093025	1096924	D	I; L; M and V; tRNA synthetases class I family protein	join(1093025..1096543,1096669..1096802,1096834..1096924)	Theileria parva strain Muguga	3502331
TpMuguga_02g00542	CDS	Mpc1	NC_007345.1	1097012	1097305	R	Mitochondrial pyruvate carrier 1	complement(1097012..1097305)	Theileria parva strain Muguga	3502332
TpMuguga_02g00543	CDS	TpMuguga_02g00543	NC_007345.1	1097528	1098985	R	putative integral membrane protein	complement(join(1097528..1098856,1098896..1098985))	Theileria parva strain Muguga	3502333
TpMuguga_02g00544	CDS	RNU1	NC_007345.1	1099468	1100151	D	U1 small nuclear ribonucleoprotein of 70kDa MW N terminal family protein	1099468..1100151	Theileria parva strain Muguga	3502334
TpMuguga_02g00545	CDS	CYB5R3	NC_007345.1	1100297	1101271	D	Oxidoreductase NAD-binding domain protein	join(1100297..1100544,1100577..1100777,1100848..1101271)	Theileria parva strain Muguga	3502335
TpMuguga_02g00546	CDS	TpMuguga_02g00546	NC_007345.1	1101703	1102557	R	Ras family protein	complement(join(1101703..1102130,1102198..1102340,1102412..1102557))	Theileria parva strain Muguga	3502167
TpMuguga_02g00547	CDS	TpMuguga_02g00547	NC_007345.1	1102924	1104075	D	TAFII55 protein conserved region family protein	1102924..1104075	Theileria parva strain Muguga	3502168
TpMuguga_02g02490	CDS	TpMuguga_02g02490	NC_007345.1	1104152	1104672	R	putative integral membrane protein	complement(join(1104152..1104315,1104417..1104464,1104499..1104583,1104619..1104672))	Theileria parva strain Muguga	86047725
TpMuguga_02g00548	CDS	dbr1-a	NC_007345.1	1104837	1106417	D	Lariat debranching enzyme A	join(1104837..1104842,1104895..1105169,1105337..1105458,1105487..1105572,1105635..1106098,1106189..1106417)	Theileria parva strain Muguga	3502169
TpMuguga_02g00549	CDS	TpMuguga_02g00549	NC_007345.1	1106476	1107273	R	uncharacterized protein	complement(1106476..1107273)	Theileria parva strain Muguga	86047673
TpMuguga_02g00550	CDS	NOP5-2	NC_007345.1	1107560	1108952	D	putative nucleolar protein 5-2	join(1107560..1107684,1107800..1108952)	Theileria parva strain Muguga	3502171
TpMuguga_02g00551	CDS	TpMuguga_02g00551	NC_007345.1	1110722	1111411	R	putative 23 kDa piroplasm membrane protein	complement(1110722..1111411)	Theileria parva strain Muguga	3502172
TpMuguga_02g00552	CDS	TpMuguga_02g00552	NC_007345.1	1112610	1113209	R	uncharacterized protein	complement(1112610..1113209)	Theileria parva strain Muguga	3502173
TpMuguga_02g00553	CDS	TpMuguga_02g00553	NC_007345.1	1113623	1114258	R	putative integral membrane protein	complement(1113623..1114258)	Theileria parva strain Muguga	3502186
TpMuguga_02g02425	CDS	TpMuguga_02g02425	NC_007345.1	1114809	1115648	R	uncharacterized protein	complement(join(1114809..1114959,1114990..1115090,1115211..1115576,1115607..1115648))	Theileria parva strain Muguga	86047720
TpMuguga_02g02305	CDS	ybaR	NC_007345.1	1115780	1118213	R	Sulfate transporter family protein	complement(join(1115780..1115824,1115854..1115982,1116160..1117730,1117811..1118213))	Theileria parva strain Muguga	3502187
TpMuguga_02g00555	CDS	TpMuguga_02g00555	NC_007345.1	1119328	1120067	D	putative integral membrane protein	join(1119328..1119375,1119407..1119593,1119727..1119825,1119856..1120067)	Theileria parva strain Muguga	3502188
TpMuguga_02g00556	CDS	TpMuguga_02g00556	NC_007345.1	1120167	1122732	R	uncharacterized protein	complement(join(1120167..1120397,1120730..1121008,1121158..1121336,1121527..1122065,1122455..1122732))	Theileria parva strain Muguga	3502189
TpMuguga_02g00557	CDS	Pfn	NC_007345.1	1123327	1124029	D	Profilin family protein	join(1123327..1123401,1123610..1124029)	Theileria parva strain Muguga	3502190
TpMuguga_02g00558	CDS	NOP2	NC_007345.1	1124396	1126844	D	NOL1/NOP2/sun family putative RNA methylase domain protein	join(1124396..1124672,1124853..1124932,1125011..1125102,1125300..1125490,1125642..1125780,1126103..1126425,1126660..1126844)	Theileria parva strain Muguga	3502191
TpMuguga_02g00559	CDS	ypt3	NC_007345.1	1126858	1128161	R	uncharacterized protein	complement(join(1126858..1127164,1127405..1127735,1128101..1128161))	Theileria parva strain Muguga	3502074
TpMuguga_02g00560	CDS	pre3	NC_007345.1	1128705	1129939	D	Proteasome subunit family protein	join(1128705..1129092,1129488..1129939)	Theileria parva strain Muguga	3502075
TpMuguga_02g00561	CDS	TpMuguga_02g00561	NC_007345.1	1130176	1131455	D	uncharacterized protein	join(1130176..1130371,1130941..1131455)	Theileria parva strain Muguga	3502076
TpMuguga_02g00562	CDS	ROM4	NC_007345.1	1132040	1135160	D	Rhomboid family protein	join(1132040..1133277,1133435..1133525,1133769..1134029,1134172..1134334,1134445..1134590,1134966..1135160)	Theileria parva strain Muguga	3502077
TpMuguga_02g00563	CDS	NPLOC4	NC_007345.1	1135585	1137723	D	NPL4 family protein	join(1135585..1135749,1135791..1135971,1136023..1136174,1136373..1136600,1136854..1137723)	Theileria parva strain Muguga	3502078
TpMuguga_02g00564	CDS	TpMuguga_02g00564	NC_007345.1	1138280	1139188	D	Tpr-like protein	1138280..1139188	Theileria parva strain Muguga	3502079
TpMuguga_02g00565	CDS	PROSC	NC_007345.1	1139324	1139971	R	proline synthase co-transcribed-like protein	complement(1139324..1139971)	Theileria parva strain Muguga	3502080
TpMuguga_02g02170	CDS	ROM4	NC_007345.1	1140115	1143502	R	Rhomboid family protein	complement(join(1140115..1140185,1140355..1140562,1140827..1140972,1141260..1141425,1141457..1141510,1141567..1141625,1141791..1141941,1142187..1142277,1142448..1142780,1143063..1143502))	Theileria parva strain Muguga	3501871
TpMuguga_02g02280	CDS	TpMuguga_02g02280	NC_007345.1	1143874	1144462	R	uncharacterized protein	complement(join(1143874..1143959,1144190..1144293,1144359..1144462))	Theileria parva strain Muguga	86047702
TpMuguga_02g00568	CDS	rpl4a	NC_007345.1	1144691	1145860	R	Ribosomal protein L4/L1 family protein	complement(1144691..1145860)	Theileria parva strain Muguga	3501872
TpMuguga_02g00569	CDS	TpMuguga_02g00569	NC_007345.1	1146692	1148008	D	uncharacterized protein	1146692..1148008	Theileria parva strain Muguga	3501873
TpMuguga_02g00570	CDS	TpMuguga_02g00570	NC_007345.1	1148420	1149103	D	uncharacterized protein	1148420..1149103	Theileria parva strain Muguga	3501874
TpMuguga_02g00571	CDS	TpMuguga_02g00571	NC_007345.1	1149493	1151678	D	uncharacterized protein	join(1149493..1149522,1149556..1150828,1150948..1151678)	Theileria parva strain Muguga	3501875
TpMuguga_02g02100	CDS	TpMuguga_02g02100	NC_007345.1	1152044	1155392	R	Exportin 1-like family protein	complement(join(1152044..1154304,1154573..1154841,1154912..1155033,1155126..1155210,1155328..1155392))	Theileria parva strain Muguga	3501765
TpMuguga_02g00574	CDS	TpMuguga_02g00574	NC_007345.1	1155624	1157315	R	uncharacterized protein	complement(join(1155624..1155982,1156227..1156302,1156332..1156403,1156530..1156591,1156629..1156769,1157025..1157072,1157255..1157315))	Theileria parva strain Muguga	3501766
TpMuguga_02g00575	CDS	TpMuguga_02g00575	NC_007345.1	1157724	1158507	D	uncharacterized protein	join(1157724..1158007,1158168..1158369,1158454..1158507)	Theileria parva strain Muguga	3501767
TpMuguga_02g00576	CDS	GUK1	NC_007345.1	1159404	1159985	R	guanylate kinase	complement(1159404..1159985)	Theileria parva strain Muguga	3501768
TpMuguga_02g00577	CDS	PFP-BETA2	NC_007345.1	1160921	1167601	D	Phosphofructokinase family protein	join(1160921..1160945,1161528..1161740,1162017..1164563,1165122..1165364,1165710..1167601)	Theileria parva strain Muguga	3501769
TpMuguga_02g00578	CDS	TpMuguga_02g00578	NC_007345.1	1168788	1170092	D	uncharacterized protein	1168788..1170092	Theileria parva strain Muguga	3501573
TpMuguga_02g00579	CDS	TpMuguga_02g00579	NC_007345.1	1170598	1174192	D	uncharacterized protein	join(1170598..1173544,1173999..1174192)	Theileria parva strain Muguga	3501574
TpMuguga_02g00580	CDS	PUB49	NC_007345.1	1174906	1176784	R	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein	complement(join(1174906..1176005,1176343..1176784))	Theileria parva strain Muguga	3501575
TpMuguga_02g00581	CDS	TpMuguga_02g00581	NC_007345.1	1177042	1182350	D	uncharacterized protein	join(1177042..1177523,1177555..1177618,1177744..1177882,1178777..1178815,1179122..1179696,1179810..1180040,1180410..1180580,1180950..1181068,1181109..1181194,1181407..1182026,1182138..1182350)	Theileria parva strain Muguga	3501576
TpMuguga_02g00582	CDS	TpMuguga_02g00582	NC_007345.1	1182502	1184016	R	uncharacterized protein	complement(join(1182502..1183464,1183531..1184016))	Theileria parva strain Muguga	3501577
TpMuguga_02g00583	CDS	TpMuguga_02g00583	NC_007345.1	1184151	1186796	R	uncharacterized protein	complement(join(1184151..1184305,1184335..1184535,1184568..1184603,1184635..1185024,1185056..1186796))	Theileria parva strain Muguga	3501578
TpMuguga_02g00584	CDS	csnk2b	NC_007345.1	1187144	1188121	D	Casein kinase II regulatory subunit family protein	join(1187144..1187251,1187337..1187549,1187627..1187953,1188059..1188121)	Theileria parva strain Muguga	3501621
TpMuguga_02g00585	CDS	TpMuguga_02g00585	NC_007345.1	1188208	1189105	D	uncharacterized protein	join(1188208..1188307,1188408..1188520,1188637..1188706,1188803..1188924,1188956..1189105)	Theileria parva strain Muguga	3501622
TpMuguga_02g00586	CDS	TpMuguga_02g00586	NC_007345.1	1189236	1189991	R	uncharacterized protein	complement(1189236..1189991)	Theileria parva strain Muguga	3501623
TpMuguga_02g00587	CDS	TpMuguga_02g00587	NC_007345.1	1190135	1190936	D	Ribonuclease H2 non-catalytic subunit (Ylr154p-like) family protein	join(1190135..1190330,1190360..1190666,1190729..1190807,1190874..1190936)	Theileria parva strain Muguga	3501624
TpMuguga_02g02240	CDS	TpMuguga_02g02240	NC_007345.1	1190954	1192505	R	putative integral membrane protein	complement(join(1190954..1191202,1191233..1191306,1191336..1191501,1191534..1191845,1191907..1192022,1192088..1192505))	Theileria parva strain Muguga	3501625
TpMuguga_02g02450	CDS	TpMuguga_02g02450	NC_007345.1	1192423	1194966	R	uncharacterized protein	complement(1192423..1194966)	Theileria parva strain Muguga	3501626
TpMuguga_02g00590	CDS	TLDC2	NC_007345.1	1195088	1196428	R	TLD family protein	complement(1195088..1196428)	Theileria parva strain Muguga	3501627
TpMuguga_02g00591	CDS	TpMuguga_02g00591	NC_007345.1	1196740	1199961	R	putative integral membrane protein	complement(1196740..1199961)	Theileria parva strain Muguga	3502292
TpMuguga_02g00592	CDS	TpMuguga_02g00592	NC_007345.1	1201076	1204498	R	putative integral membrane protein	complement(1201076..1204498)	Theileria parva strain Muguga	3502293
TpMuguga_02g00593	CDS	TpMuguga_02g00593	NC_007345.1	1204923	1208171	R	putative integral membrane protein	complement(1204923..1208171)	Theileria parva strain Muguga	3502294
TpMuguga_02g00594	CDS	TpMuguga_02g00594	NC_007345.1	1209056	1209877	D	PPP4R2 family protein	1209056..1209877	Theileria parva strain Muguga	3502295
TpMuguga_02g00596	CDS	TpMuguga_02g00596	NC_007345.1	1209989	1213378	R	uncharacterized protein	complement(join(1209989..1210294,1210412..1210955,1210988..1211064,1211171..1211282,1211318..1211595,1211625..1211750,1211782..1212556,1212615..1212736,1212767..1212877,1212908..1213378))	Theileria parva strain Muguga	3502296
TpMuguga_02g00595	CDS	prpf31	NC_007345.1	1213592	1215368	D	Prp31 C terminal domain protein	join(1213592..1213594,1213656..1213883,1213916..1214477,1214541..1214716,1214782..1214968,1215023..1215100,1215162..1215242,1215277..1215368)	Theileria parva strain Muguga	3502297
TpMuguga_02g00597	CDS	NEDD8	NC_007345.1	1215413	1215725	R	NEDD8	complement(join(1215413..1215504,1215558..1215593,1215623..1215725))	Theileria parva strain Muguga	3501423
TpMuguga_02g00598	CDS	CWC27	NC_007345.1	1215926	1217611	R	Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD family protein	complement(join(1215926..1215955,1216078..1216146,1216177..1216268,1216307..1216397,1216429..1216765,1216794..1216894,1216924..1217066,1217098..1217163,1217242..1217310,1217392..1217611))	Theileria parva strain Muguga	3501424
TpMuguga_02g00599	CDS	tbce	NC_007345.1	1217735	1219370	R	Ubiquitin-like domain protein	complement(join(1217735..1217842,1217907..1219370))	Theileria parva strain Muguga	3501425
TpMuguga_02g00600	CDS	PCNA	NC_007345.1	1219601	1220672	R	proliferating cell nuclear antigen	complement(join(1219601..1220043,1220330..1220672))	Theileria parva strain Muguga	3501426
TpMuguga_02g00601	CDS	TpMuguga_02g00601	NC_007345.1	1221560	1223610	D	uncharacterized protein	join(1221560..1222758,1222855..1223291,1223459..1223610)	Theileria parva strain Muguga	3501427
TpMuguga_02g00602	CDS	TpMuguga_02g00602	NC_007345.1	1223901	1224994	D	Thioredoxin family protein	join(1223901..1224057,1224229..1224480,1224741..1224994)	Theileria parva strain Muguga	3501428
TpMuguga_02g00603	CDS	yqeH	NC_007345.1	1225240	1228135	R	50S ribosome-binding GTPase family protein	complement(join(1225240..1225685,1225884..1226301,1226478..1226623,1227110..1228018,1228066..1228135))	Theileria parva strain Muguga	3501452
TpMuguga_02g00604	CDS	TpMuguga_02g00604	NC_007345.1	1228158	1229295	D	Mitotic checkpoint regulator MAD2B-interacting family protein	join(1228158..1228634,1228664..1228725,1228973..1229120,1229188..1229295)	Theileria parva strain Muguga	3501453
TpMuguga_02g00605	CDS	SLC25A37	NC_007345.1	1229632	1231381	D	Mitochondrial carrier family protein	join(1229632..1229677,1230027..1230647,1231012..1231115,1231226..1231381)	Theileria parva strain Muguga	3501454
TpMuguga_02g00606	CDS	TpMuguga_02g00606	NC_007345.1	1231821	1232156	R	uncharacterized protein	complement(1231821..1232156)	Theileria parva strain Muguga	3501455
TpMuguga_02g00607	CDS	fttB	NC_007345.1	1232906	1234572	D	uncharacterized protein	join(1232906..1232978,1233049..1233131,1233413..1233616,1233848..1234017,1234332..1234572)	Theileria parva strain Muguga	3501456
TpMuguga_02g00608	CDS	TpMuguga_02g00608	NC_007345.1	1234657	1235721	D	uncharacterized protein	1234657..1235721	Theileria parva strain Muguga	3501457
TpMuguga_02g00609	CDS	FCF1	NC_007345.1	1235807	1237080	R	Fcf1 family protein	complement(join(1235807..1235944,1236188..1236348,1236430..1236462,1236559..1236707,1236745..1236798,1236876..1236943,1237078..1237080))	Theileria parva strain Muguga	3501471
TpMuguga_02g00610	CDS	TpMuguga_02g00610	NC_007345.1	1237141	1237729	R	uncharacterized protein	complement(join(1237141..1237275,1237439..1237729))	Theileria parva strain Muguga	3501472
TpMuguga_02g00611	CDS	htz-1	NC_007345.1	1238234	1239096	R	Histone H2A.V	complement(join(1238234..1238613,1239018..1239096))	Theileria parva strain Muguga	3501473
TpMuguga_02g00612	CDS	trappc5	NC_007345.1	1239409	1240755	R	Transport protein particle (TRAPP) component family protein	complement(join(1239409..1239489,1239626..1239697,1239945..1239997,1240077..1240258,1240572..1240660,1240696..1240755))	Theileria parva strain Muguga	3501474
TpMuguga_02g00613	CDS	RH8	NC_007345.1	1240907	1243793	R	DEAD-box ATP-dependent RNA helicase 8	complement(join(1240907..1240976,1241244..1242084,1242563..1242628,1242797..1242965,1243686..1243793))	Theileria parva strain Muguga	3501475
TpMuguga_02g00614	CDS	TpMuguga_02g00614	NC_007345.1	1244324	1244643	R	uncharacterized protein	complement(join(1244324..1244517,1244595..1244643))	Theileria parva strain Muguga	3501476
TpMuguga_02g02030	CDS	RLIM	NC_007345.1	1245153	1246211	D	Ring finger domain protein	join(1245153..1245261,1245292..1245416,1245513..1245599,1245630..1246211)	Theileria parva strain Muguga	86047680
TpMuguga_02g02615	CDS	TpMuguga_02g02615	NC_007345.1	1247038	1249919	D	putative integral membrane protein	join(1247038..1247824,1247854..1248036,1248694..1249919)	Theileria parva strain Muguga	3501487
TpMuguga_02g02010	CDS	TpMuguga_02g02010	NC_007345.1	1250064	1250876	D	uncharacterized protein	1250064..1250876	Theileria parva strain Muguga	86047677
TpMuguga_02g02455	CDS	TpMuguga_02g02455	NC_007345.1	1251345	1252055	D	uncharacterized protein	1251345..1252055	Theileria parva strain Muguga	3501488
TpMuguga_02g00617	CDS	TpMuguga_02g00617	NC_007345.1	1252730	1253359	R	uncharacterized protein	complement(join(1252730..1252854,1253224..1253359))	Theileria parva strain Muguga	3501489
TpMuguga_02g00618	CDS	TpMuguga_02g00618	NC_007345.1	1253967	1256084	R	uncharacterized protein	complement(1253967..1256084)	Theileria parva strain Muguga	3501490
TpMuguga_02g00619	CDS	TpMuguga_02g00619	NC_007345.1	1256516	1257972	R	putative integral membrane protein	complement(join(1256516..1256607,1256728..1256768,1257185..1257537,1257640..1257972))	Theileria parva strain Muguga	3501491
TpMuguga_02g02470	CDS	TpMuguga_02g02470	NC_007345.1	1258306	1264211	R	putative integral membrane protein	complement(join(1258306..1258525,1259086..1259231,1259375..1260591,1260898..1262265,1262392..1262997,1263247..1263300,1263343..1263531,1263731..1263982,1264070..1264101,1264132..1264211))	Theileria parva strain Muguga	3501494
TpMuguga_02g02460	CDS	TpMuguga_02g02460	NC_007345.1	1264513	1264934	D	uncharacterized protein	join(1264513..1264616,1264746..1264844,1264898..1264934)	Theileria parva strain Muguga	86047723
TpMuguga_02g00624	CDS	TpMuguga_02g00624	NC_007345.1	1265077	1265884	D	uncharacterized protein	join(1265077..1265190,1265603..1265884)	Theileria parva strain Muguga	3501496
TpMuguga_02g00625	CDS	Dnajb13	NC_007345.1	1266187	1268092	R	chaperone protein DnaJ	complement(join(1266187..1266414,1266503..1266584,1266834..1266916,1266947..1267038,1267259..1267435,1267678..1267822,1267930..1268052,1268084..1268092))	Theileria parva strain Muguga	3501497
TpMuguga_02g00626	CDS	TpMuguga_02g00626	NC_007345.1	1268361	1269041	R	uncharacterized protein	complement(join(1268361..1268558,1268709..1269041))	Theileria parva strain Muguga	3501498
TpMuguga_02g00627	CDS	TpMuguga_02g00627	NC_007345.1	1269133	1271165	R	Leucyl/phenylalanyl-tRNA protein transferase family protein	complement(join(1269133..1269231,1269266..1269375,1269404..1269505,1269748..1269976,1270154..1270386,1270523..1271165))	Theileria parva strain Muguga	3501499
TpMuguga_02g00628	CDS	TpMuguga_02g00628	NC_007345.1	1271360	1274011	D	uncharacterized protein	1271360..1274011	Theileria parva strain Muguga	3501529
TpMuguga_02g00629	CDS	TpMuguga_02g00629	NC_007345.1	1274164	1276065	R	Sexual stage antigen s48/45 domain protein	complement(join(1274164..1274178,1274280..1274762,1274866..1276065))	Theileria parva strain Muguga	3501530
TpMuguga_02g00630	CDS	ppk34	NC_007345.1	1276537	1277950	D	Protein kinase domain protein	join(1276537..1276837,1276869..1276991,1277026..1277103,1277159..1277254,1277377..1277828,1277879..1277950)	Theileria parva strain Muguga	3501531
TpMuguga_02g00631	CDS	mis3	NC_007345.1	1277981	1279333	D	KRR1 small subunit processome component-like protein	join(1277981..1278076,1278128..1278228,1278264..1278366,1278396..1278492,1278522..1278787,1278916..1279023,1279055..1279333)	Theileria parva strain Muguga	3501532
TpMuguga_02g00632	CDS	TpMuguga_02g00632	NC_007345.1	1279662	1280877	D	SNARE domain protein	join(1279662..1279784,1279824..1279867,1280029..1280116,1280208..1280341,1280371..1280424,1280455..1280531,1280624..1280683,1280714..1280877)	Theileria parva strain Muguga	3501533
TpMuguga_02g00633	CDS	TpMuguga_02g00633	NC_007345.1	1281042	1281754	R	Ribosomal protein L22p/L17e family protein	complement(join(1281042..1281566,1281614..1281754))	Theileria parva strain Muguga	3502349
TpMuguga_02g02245	CDS	NHX7	NC_007345.1	1282098	1285504	D	Sodium/hydrogen exchanger family protein	join(1282098..1282538,1282637..1282817,1282866..1283324,1283356..1283474,1283584..1283733,1283801..1284224,1284259..1284506,1284538..1284657,1284819..1285141,1285186..1285504)	Theileria parva strain Muguga	3502350
TpMuguga_02g00636	CDS	SF3A2	NC_007345.1	1285578	1286445	D	Zinc-finger of C2H2 type family protein	join(1285578..1285886,1285967..1286198,1286230..1286330,1286362..1286445)	Theileria parva strain Muguga	3502352
TpMuguga_02g00637	CDS	TpMuguga_02g00637	NC_007345.1	1286782	1288422	D	uncharacterized protein	1286782..1288422	Theileria parva strain Muguga	3502353
TpMuguga_02g00638	CDS	dnaJ	NC_007345.1	1288796	1290751	R	DnaJ domain protein	complement(join(1288796..1289317,1289376..1289786,1289852..1290171,1290230..1290306,1290339..1290489,1290535..1290637,1290668..1290698,1290735..1290751))	Theileria parva strain Muguga	3502354
TpMuguga_02g00639	CDS	TpMuguga_02g00639	NC_007345.1	1290903	1292576	D	Nucleotidyl transferase family protein	join(1290903..1291031,1291086..1291163,1291242..1291290,1291360..1291508,1291547..1291661,1291694..1291820,1291876..1292080,1292135..1292246,1292312..1292382,1292442..1292576)	Theileria parva strain Muguga	3501791
TpMuguga_02g02230	CDS	UBC16	NC_007345.1	1292592	1293313	D	Ubiquitin-conjugating enzyme family protein	join(1292592..1292723,1292755..1292947,1292988..1293146,1293252..1293313)	Theileria parva strain Muguga	3501792
TpMuguga_02g02620	CDS	TpMuguga_02g02620	NC_007345.1	1293595	1294339	D	MAC/Perforin domain protein	join(1293595..1293809,1293842..1294011,1294041..1294339)	Theileria parva strain Muguga	3501793
TpMuguga_02g00642	CDS	AP4M	NC_007345.1	1294345	1296003	R	Adaptor complexes medium subunit family protein	complement(join(1294345..1294434,1294470..1294589,1294620..1294676,1294741..1295472,1295505..1295663,1295705..1295886,1295922..1296003))	Theileria parva strain Muguga	3501794
TpMuguga_02g02330	CDS	TpMuguga_02g02330	NC_007345.1	1296557	1297544	D	putative integral membrane protein	join(1296557..1296724,1296756..1297544)	Theileria parva strain Muguga	3501796
TpMuguga_02g00645	CDS	TpMuguga_02g00645	NC_007345.1	1297969	1299234	D	uncharacterized protein	join(1297969..1298712,1298758..1299009,1299074..1299148,1299190..1299234)	Theileria parva strain Muguga	3501797
TpMuguga_02g00646	CDS	TpMuguga_02g00646	NC_007345.1	1299543	1300464	D	putative integral membrane protein	join(1299543..1299816,1299878..1299955,1299985..1300118,1300174..1300230,1300261..1300464)	Theileria parva strain Muguga	3501798
TpMuguga_02g00647	CDS	TpMuguga_02g00647	NC_007345.1	1300488	1301640	D	uncharacterized protein	join(1300488..1301258,1301307..1301371,1301403..1301640)	Theileria parva strain Muguga	3501799
TpMuguga_02g00648	CDS	TpMuguga_02g00648	NC_007345.1	1301785	1302818	D	uncharacterized protein	join(1301785..1301951,1302009..1302259,1302293..1302504,1302588..1302638,1302690..1302818)	Theileria parva strain Muguga	3501800
TpMuguga_02g00649	CDS	TpMuguga_02g00649	NC_007345.1	1303060	1306597	D	putative conserved family protein	join(1303060..1303139,1303183..1303316,1303367..1303515,1303546..1303651,1303694..1303752,1303793..1303871,1303902..1303969,1303999..1305642,1305674..1305854,1306024..1306094,1306127..1306269,1306302..1306415,1306444..1306597)	Theileria parva strain Muguga	3501801
TpMuguga_02g00651	CDS	TpMuguga_02g00651	NC_007345.1	1306709	1307395	R	Ribosomal L27 family protein	complement(1306709..1307395)	Theileria parva strain Muguga	3501803
TpMuguga_02g00652	CDS	TpMuguga_02g00652	NC_007345.1	1307509	1309017	R	Alpha/beta hydrolase family protein	complement(join(1307509..1308578,1308609..1308702,1308802..1309017))	Theileria parva strain Muguga	3502316
TpMuguga_02g00653	CDS	TpMuguga_02g00653	NC_007345.1	1309211	1310149	R	uncharacterized protein	complement(join(1309211..1309557,1309608..1309681,1309713..1309843,1309911..1310038,1310083..1310149))	Theileria parva strain Muguga	3502317
TpMuguga_02g00654	CDS	TpMuguga_02g00654	NC_007345.1	1310556	1311433	D	putative integral membrane protein	join(1310556..1310766,1310856..1311433)	Theileria parva strain Muguga	3502318
TpMuguga_02g00655	CDS	TpMuguga_02g00655	NC_007345.1	1311941	1312981	D	Choline/ethanolamine kinase family protein	join(1311941..1312794,1312861..1312981)	Theileria parva strain Muguga	3502319
TpMuguga_02g00656	CDS	TpMuguga_02g00656	NC_007345.1	1313187	1314406	D	Choline/ethanolamine kinase family protein	join(1313187..1314217,1314283..1314406)	Theileria parva strain Muguga	3502320
TpMuguga_02g00657	CDS	TpMuguga_02g00657	NC_007345.1	1314636	1315798	D	Choline/ethanolamine kinase family protein	join(1314636..1315615,1315678..1315798)	Theileria parva strain Muguga	3502321
TpMuguga_02g00658	CDS	TpMuguga_02g00658	NC_007345.1	1316350	1317573	D	Choline/ethanolamine kinase family protein	join(1316350..1317341,1317450..1317573)	Theileria parva strain Muguga	3501913
TpMuguga_02g00659	CDS	TpMuguga_02g00659	NC_007345.1	1317768	1318991	D	Choline/ethanolamine kinase family protein	join(1317768..1318795,1318862..1318991)	Theileria parva strain Muguga	3501914
TpMuguga_02g00660	CDS	TpMuguga_02g00660	NC_007345.1	1319181	1320388	D	Choline/ethanolamine kinase family protein	join(1319181..1320211,1320274..1320388)	Theileria parva strain Muguga	3501915
TpMuguga_02g00661	CDS	CSTF1	NC_007345.1	1320671	1322388	R	WD domain G-beta repeat protein	complement(join(1320671..1320707,1320738..1320806,1320838..1320919,1320965..1321064,1321096..1321254,1321288..1321365,1321399..1321550,1321581..1321672,1321723..1321800,1321832..1321944,1321979..1322090,1322122..1322283,1322327..1322388))	Theileria parva strain Muguga	3501916
TpMuguga_02g00662	CDS	Tbl3	NC_007345.1	1323186	1325867	D	Utp13 specific WD40 associated domain protein	join(1323186..1323268,1323305..1323746,1323798..1324275,1324325..1324692,1324750..1324953,1324986..1325129,1325250..1325867)	Theileria parva strain Muguga	3501917
TpMuguga_02g00663	CDS	BUB3.2	NC_007345.1	1325953	1327150	R	WD domain G-beta repeat protein	complement(join(1325953..1326412,1326442..1326500,1326604..1326758,1326791..1327016,1327049..1327150))	Theileria parva strain Muguga	3501918
TpMuguga_02g00664	CDS	GCN2	NC_007345.1	1327190	1330829	R	Protein kinase domain protein	complement(join(1327190..1327249,1327382..1329327,1329407..1330829))	Theileria parva strain Muguga	3502048
TpMuguga_02g00665	CDS	chmp2a2	NC_007345.1	1331309	1332053	D	Snf7 family protein	join(1331309..1331753,1331836..1332053)	Theileria parva strain Muguga	3502049
TpMuguga_02g00666	CDS	CS	NC_007345.1	1332424	1334688	D	citrate synthase 4 domain protein	join(1332424..1333758,1333824..1333914,1334008..1334385,1334462..1334688)	Theileria parva strain Muguga	3502050
TpMuguga_02g00667	CDS	ISPG	NC_007345.1	1334753	1337833	D	GcpE family protein	join(1334753..1334836,1334900..1334990,1335020..1335186,1335239..1335388,1335420..1335625,1335703..1335935,1335994..1336379,1336443..1336901,1336940..1337125,1337214..1337339,1337432..1337506,1337552..1337686,1337720..1337833)	Theileria parva strain Muguga	3502051
TpMuguga_02g02605	CDS	TpMuguga_02g02605	NC_007345.1	1338012	1338551	R	Iron-binding zinc finger CDGSH type family protein	complement(join(1338012..1338211,1338243..1338312,1338465..1338551))	Theileria parva strain Muguga	86047733
TpMuguga_02g02600	CDS	TpMuguga_02g02600	NC_007345.1	1338937	1340092	R	Acyltransferase family protein	complement(join(1338937..1339047,1339120..1339211,1339310..1339451,1339484..1339668,1339712..1339819,1339903..1340092))	Theileria parva strain Muguga	3502052
TpMuguga_02g00669	CDS	VPS9A	NC_007345.1	1340399	1342214	D	Vacuolar sorting protein 9 (VPS9) domain protein	join(1340399..1340441,1340509..1340739,1340786..1340876,1340935..1341028,1341097..1341185,1341275..1341511,1341572..1342214)	Theileria parva strain Muguga	3502210
TpMuguga_02g00670	CDS	grwd1	NC_007345.1	1342376	1343899	R	WD domain G-beta repeat protein	complement(join(1342376..1342820,1342851..1343121,1343203..1343613,1343671..1343899))	Theileria parva strain Muguga	3502211
TpMuguga_02g00671	CDS	TpMuguga_02g00671	NC_007345.1	1344081	1346152	D	PX domain protein	join(1344081..1344177,1344281..1344435,1344483..1344578,1344682..1344774,1344804..1344888,1344954..1345741,1345903..1345971,1346003..1346152)	Theileria parva strain Muguga	3502212
TpMuguga_02g00672	CDS	TpMuguga_02g00672	NC_007345.1	1346563	1348158	D	putative integral membrane protein	1346563..1348158	Theileria parva strain Muguga	3502213
TpMuguga_02g00673	CDS	TpMuguga_02g00673	NC_007345.1	1348418	1350123	D	Major Facilitator Superfamily protein	join(1348418..1349330,1349435..1350123)	Theileria parva strain Muguga	3502214
TpMuguga_02g00674	CDS	TpMuguga_02g00674	NC_007345.1	1350570	1351895	D	Major Facilitator Superfamily protein	1350570..1351895	Theileria parva strain Muguga	3502101
TpMuguga_02g00675	CDS	TpMuguga_02g00675	NC_007345.1	1352054	1355339	R	Spc97 / Spc98 family protein	complement(join(1352054..1352108,1352139..1352291,1352326..1352610,1352719..1353762,1353797..1354686,1354770..1355339))	Theileria parva strain Muguga	3502102
TpMuguga_02g00676	CDS	PARN	NC_007345.1	1355694	1357568	D	CAF1 family ribonuclease family protein	1355694..1357568	Theileria parva strain Muguga	3502103
TpMuguga_02g00677	CDS	TpMuguga_02g00677	NC_007345.1	1357855	1359398	D	Zinc finger CCCH domain-containing protein 11	join(1357855..1357976,1358135..1358274,1358345..1358464,1358531..1358649,1358682..1358751,1358846..1358922,1358964..1359245,1359366..1359398)	Theileria parva strain Muguga	3502104
TpMuguga_02g00678	CDS	TpMuguga_02g00678	NC_007345.1	1359598	1360689	D	eukaryotic translation initiation factor 2 subunit beta	join(1359598..1359627,1359661..1359751,1359803..1359871,1359936..1360009,1360067..1360209,1360286..1360428,1360514..1360689)	Theileria parva strain Muguga	3502105
TpMuguga_02g00679	CDS	TpMuguga_02g00679	NC_007345.1	1360737	1361318	R	putative integral membrane protein	complement(join(1360737..1360782,1360904..1361211,1361301..1361318))	Theileria parva strain Muguga	3502106
TpMuguga_02g00680	CDS	rpmB	NC_007345.1	1362009	1362814	D	Ribosomal L28 family protein	join(1362009..1362011,1362093..1362151,1362270..1362386,1362455..1362715,1362745..1362814)	Theileria parva strain Muguga	3501949
TpMuguga_02g00681	CDS	TpMuguga_02g00681	NC_007345.1	1362871	1364220	R	uncharacterized protein	complement(join(1362871..1363382,1363455..1363703,1363805..1364059,1364094..1364220))	Theileria parva strain Muguga	3501950
TpMuguga_02g00682	CDS	TpMuguga_02g00682	NC_007345.1	1364318	1365304	D	uncharacterized protein	join(1364318..1364493,1364558..1364642,1364681..1364746,1364780..1364880,1364956..1365037,1365107..1365304)	Theileria parva strain Muguga	3501951
TpMuguga_02g00683	CDS	Cdc6	NC_007345.1	1365336	1367326	R	Archaeal ATPase family protein	complement(join(1365336..1365535,1365613..1365736,1365816..1366000,1366070..1366242,1366334..1366690,1366785..1367093,1367172..1367326))	Theileria parva strain Muguga	3501952
TpMuguga_02g00684	CDS	TpMuguga_02g00684	NC_007345.1	1367667	1369663	D	uncharacterized protein	join(1367667..1367882,1367915..1368013,1368044..1368470,1368560..1368998,1369075..1369290,1369324..1369580,1369614..1369663)	Theileria parva strain Muguga	3501953
TpMuguga_02g00685	CDS	kif6	NC_007345.1	1369664	1371721	R	Kinesin motor domain protein	complement(join(1369664..1370664,1370812..1371020,1371074..1371454,1371585..1371721))	Theileria parva strain Muguga	3501944
TpMuguga_02g00686	CDS	TATDN1	NC_007345.1	1372009	1373430	R	putative deoxyribonuclease TATDN1	complement(join(1372009..1372051,1372159..1372360,1372390..1372578,1372646..1372731,1372800..1373010,1373039..1373139,1373204..1373430))	Theileria parva strain Muguga	3501945
TpMuguga_02g00687	CDS	TpMuguga_02g00687	NC_007345.1	1373693	1374664	D	uncharacterized protein	1373693..1374664	Theileria parva strain Muguga	3501946
TpMuguga_02g00688	CDS	VAC14	NC_007345.1	1374831	1377605	R	Vacuolar protein 14 C-terminal Fig4p binding family protein	complement(join(1374831..1374940,1374969..1375108,1375175..1375255,1375285..1375358,1375389..1375448,1375510..1375605,1375637..1375753,1375781..1375856,1375939..1376376,1376468..1376537,1376569..1376602,1376682..1376843,1376909..1376986,1377139..1377231,1377321..1377605))	Theileria parva strain Muguga	3501947
TpMuguga_02g00689	CDS	UBA1	NC_007345.1	1377661	1381702	R	ubiquitin-activating enzyme E1 family protein	complement(join(1377661..1377786,1377930..1378652,1378749..1379041,1379176..1379452,1379532..1379705,1379785..1379928,1380001..1380183,1380245..1380578,1380684..1380868,1380957..1381187,1381275..1381471,1381570..1381702))	Theileria parva strain Muguga	3501948
TpMuguga_02g02315	CDS	TpMuguga_02g02315	NC_007345.1	1381907	1382584	R	uncharacterized protein	complement(1381907..1382584)	Theileria parva strain Muguga	86047706
TpMuguga_02g02650	CDS	TpMuguga_02g02650	NC_007345.1	1382589	1383008	R	uncharacterized protein family (UPF0203) family protein; uncharacterized protein	complement(join(1382589..1382648,1382774..1382905,1382967..1383008))	Theileria parva strain Muguga	86047735
TpMuguga_02g00690	CDS	CMPK1	NC_007345.1	1383259	1384207	D	Adenylate kinase family protein	join(1383259..1383294,1383339..1383501,1383676..1383921,1384017..1384207)	Theileria parva strain Muguga	3501973
TpMuguga_02g00691	CDS	TpMuguga_02g00691	NC_007345.1	1384429	1386201	D	uncharacterized protein	1384429..1386201	Theileria parva strain Muguga	3501974
TpMuguga_02g02185	CDS	RABGAP1	NC_007345.1	1386476	1388737	R	Rab-GTPase-TBC domain protein	complement(join(1386476..1387164,1387259..1387360,1387432..1387513,1387606..1387689,1387771..1387851,1387946..1388123,1388190..1388737))	Theileria parva strain Muguga	3501976
TpMuguga_02g02260	CDS	TpMuguga_02g02260	NC_007345.1	1389054	1390146	D	uncharacterized protein	join(1389054..1389312,1389406..1389489,1389596..1389773,1389867..1390146)	Theileria parva strain Muguga	3501978
TpMuguga_02g00696	CDS	TpMuguga_02g00696	NC_007345.1	1390216	1392193	R	uncharacterized protein	complement(join(1390216..1390569,1390731..1391072,1391216..1392193))	Theileria parva strain Muguga	3501979
TpMuguga_02g00697	CDS	CPK2	NC_007345.1	1392413	1394311	R	Protein kinase domain protein	complement(join(1392413..1392472,1392617..1394311))	Theileria parva strain Muguga	3501679
TpMuguga_02g00698	CDS	TpMuguga_02g00698	NC_007345.1	1394586	1395504	D	Breast carcinoma amplified sequence 2 (BCAS2) family protein	join(1394586..1394823,1394907..1395096,1395202..1395330,1395435..1395504)	Theileria parva strain Muguga	3501680
TpMuguga_02g00699	CDS	TpMuguga_02g00699	NC_007345.1	1395485	1397164	R	uncharacterized protein family (UPF0121) family protein; uncharacterized protein	complement(join(1395485..1395529,1395645..1395709,1395803..1396023,1396088..1396347,1396470..1396636,1396678..1396786,1396911..1397023,1397122..1397164))	Theileria parva strain Muguga	3501681
TpMuguga_02g00700	CDS	TpMuguga_02g00700	NC_007345.1	1397552	1397993	R	putative small nuclear ribonucleoprotein G	complement(join(1397552..1397733,1397927..1397993))	Theileria parva strain Muguga	86047674
TpMuguga_02g00701	CDS	SEC23	NC_007345.1	1398248	1400659	R	uncharacterized protein	complement(join(1398248..1400116,1400204..1400659))	Theileria parva strain Muguga	3501683
TpMuguga_02g00702	CDS	TpMuguga_02g00702	NC_007345.1	1401351	1403421	R	Cytidylyltransferase family protein	complement(join(1401351..1401416,1401472..1401531,1401572..1401691,1401764..1401860,1401895..1401960,1402023..1402144,1402201..1402415,1402446..1402599,1402663..1402834,1402905..1403214,1403274..1403421))	Theileria parva strain Muguga	3501684
TpMuguga_02g02050	CDS	TpMuguga_02g02050	NC_007345.1	1403725	1404293	D	putative integral membrane protein	join(1403725..1403979,1404036..1404293)	Theileria parva strain Muguga	86047682
TpMuguga_02g00703	CDS	TpMuguga_02g00703	NC_007345.1	1404482	1416286	R	putative integral membrane protein	complement(1404482..1416286)	Theileria parva strain Muguga	3501634
TpMuguga_02g00704	CDS	TpMuguga_02g00704	NC_007345.1	1417478	1418530	D	uncharacterized protein	1417478..1418530	Theileria parva strain Muguga	3501635
TpMuguga_02g00705	CDS	TpMuguga_02g00705	NC_007345.1	1419158	1420001	D	putative integral membrane protein	join(1419158..1419916,1419942..1420001)	Theileria parva strain Muguga	3501636
TpMuguga_02g00706	CDS	TpMuguga_02g00706	NC_007345.1	1420061	1428805	D	uncharacterized protein	join(1420061..1420845,1420885..1428805)	Theileria parva strain Muguga	3501637
TpMuguga_02g00707	CDS	ARP4	NC_007345.1	1429122	1430465	R	Actin family protein	complement(1429122..1430465)	Theileria parva strain Muguga	3501638
TpMuguga_02g00962	CDS	TpMuguga_02g00962	NC_007345.1	1430487	1430973	R	Phosphopantetheine attachment site family protein	complement(join(1430487..1430672,1430702..1430880,1430913..1430973))	Theileria parva strain Muguga	3501639
TpMuguga_02g00708	CDS	GNL2	NC_007345.1	1431011	1433056	R	NGP1NT (NUC091) domain protein	complement(join(1431011..1431244,1431285..1431376,1431439..1431566,1431600..1431679,1431711..1431811,1431868..1431998,1432030..1432227,1432257..1432330,1432377..1432668,1432700..1432901,1432936..1433056))	Theileria parva strain Muguga	3501640
TpMuguga_02g00709	CDS	TpMuguga_02g00709	NC_007345.1	1433256	1434144	D	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397 family protein	join(1433256..1433340,1433419..1433569,1433603..1433683,1433714..1433871,1433903..1434144)	Theileria parva strain Muguga	3502305
TpMuguga_02g02020	CDS	TpMuguga_02g02020	NC_007345.1	1434150	1435118	R	Ribosome recycling factor family protein	complement(join(1434150..1434230,1434261..1434339,1434369..1434425,1434456..1434497,1434526..1434714,1434744..1434956,1434991..1435118))	Theileria parva strain Muguga	3502306
TpMuguga_02g02565	CDS	TpMuguga_02g02565	NC_007345.1	1435698	1437447	D	Divergent CRAL/TRIO domain protein	join(1435698..1435884,1435981..1436136,1436195..1436694,1436760..1437180,1437209..1437447)	Theileria parva strain Muguga	3502309
TpMuguga_02g00714	CDS	TpMuguga_02g00714	NC_007345.1	1437501	1438021	D	uncharacterized protein	join(1437501..1437920,1437962..1438021)	Theileria parva strain Muguga	3501408
TpMuguga_02g00715	CDS	pitA	NC_007345.1	1438174	1440296	R	Phosphatidylinositol transfer family protein	complement(join(1438174..1439709,1439741..1439927,1439969..1440031,1440069..1440217,1440252..1440296))	Theileria parva strain Muguga	3501409
TpMuguga_02g00716	CDS	TpMuguga_02g00716	NC_007345.1	1440480	1440813	D	uncharacterized protein	join(1440480..1440557,1440781..1440813)	Theileria parva strain Muguga	86047675
TpMuguga_02g00717	CDS	TpMuguga_02g00717	NC_007345.1	1441217	1442118	D	EF hand family protein	join(1441217..1441295,1441497..1441601,1441742..1441852,1441964..1442118)	Theileria parva strain Muguga	3501411
TpMuguga_02g00718	CDS	TpMuguga_02g00718	NC_007345.1	1442481	1443338	D	uncharacterized protein	1442481..1443338	Theileria parva strain Muguga	3501412
TpMuguga_02g00719	CDS	TpMuguga_02g00719	NC_007345.1	1443485	1444657	R	vacuolar membrane family protein	complement(1443485..1444657)	Theileria parva strain Muguga	3501413
TpMuguga_02g00720	CDS	RPL17	NC_007345.1	1445507	1446354	D	ribosomal protein L22	join(1445507..1445815,1446100..1446354)	Theileria parva strain Muguga	3501414
TpMuguga_02g00721	CDS	TpMuguga_02g00721	NC_007345.1	1446486	1448345	D	uncharacterized protein	1446486..1448345	Theileria parva strain Muguga	3501415
TpMuguga_02g00722	CDS	TpMuguga_02g00722	NC_007345.1	1448434	1448947	R	uncharacterized protein	complement(join(1448434..1448626,1448656..1448782,1448869..1448947))	Theileria parva strain Muguga	3501555
TpMuguga_02g00723	CDS	TpMuguga_02g00723	NC_007345.1	1449082	1449696	R	uncharacterized protein	complement(join(1449082..1449192,1449250..1449696))	Theileria parva strain Muguga	3501556
TpMuguga_02g00724	CDS	TpMuguga_02g00724	NC_007345.1	1451123	1454059	D	Inner membrane complex family protein	join(1451123..1451860,1451919..1452266,1452337..1452462,1452530..1454059)	Theileria parva strain Muguga	3501557
TpMuguga_02g00725	CDS	glpK	NC_007345.1	1454133	1455925	R	FGGY family of carbohydrate kinases domain protein	complement(join(1454133..1454648,1454685..1454762,1454802..1454890,1454921..1455135,1455169..1455263,1455294..1455394,1455430..1455540,1455582..1455763,1455795..1455925))	Theileria parva strain Muguga	3501558
TpMuguga_02g00726	CDS	TpMuguga_02g00726	NC_007345.1	1456282	1457045	R	putative integral membrane protein	complement(join(1456282..1456332,1456370..1456415,1456447..1456523,1456556..1456618,1456651..1456710,1456742..1456770,1456801..1456894,1456952..1456956,1456991..1457045))	Theileria parva strain Muguga	3501559
TpMuguga_02g00727	CDS	Pka-C3	NC_007345.1	1457923	1459458	D	cAMP-dependent protein kinase catalytic subunit beta domain protein	1457923..1459458	Theileria parva strain Muguga	3501659
TpMuguga_02g00728	CDS	Ddx47	NC_007345.1	1459678	1461304	R	putative ATP-dependent RNA helicase DDX47	complement(join(1459678..1459830,1459868..1459931,1459966..1460137,1460177..1460240,1460280..1460474,1460508..1460603,1460641..1460873,1460908..1461304))	Theileria parva strain Muguga	3501660
TpMuguga_02g00729	CDS	Snrpd2	NC_007345.1	1461793	1462207	D	Small nuclear ribonucleoprotein Sm D2	join(1461793..1461802,1461835..1461974,1462037..1462207)	Theileria parva strain Muguga	3501661
TpMuguga_02g00730	CDS	vps11	NC_007345.1	1462409	1465509	D	Vacuolar protein sorting-associated protein 11-like protein	join(1462409..1462469,1462557..1462773,1462824..1464917,1464948..1465065,1465111..1465377,1465408..1465509)	Theileria parva strain Muguga	3501662
TpMuguga_02g00732	CDS	TpMuguga_02g00732	NC_007345.1	1465608	1467091	D	putative integral membrane protein	join(1465608..1466034,1466064..1467091)	Theileria parva strain Muguga	86047676
TpMuguga_02g02365	CDS	TpMuguga_02g02365	NC_007345.1	1467344	1468835	D	putative integral membrane protein	join(1467344..1467776,1467808..1468835)	Theileria parva strain Muguga	3501664
TpMuguga_02g02235	CDS	wdr55	NC_007345.1	1468867	1470157	R	WD domain G-beta repeat protein	complement(join(1468867..1468964,1468994..1469162,1469195..1469311,1469343..1469439,1469468..1469510,1469540..1469606,1469636..1469708,1469743..1469827,1469917..1470020,1470054..1470157))	Theileria parva strain Muguga	3501714
TpMuguga_02g00735	CDS	TpMuguga_02g00735	NC_007345.1	1470482	1471074	R	Eukaryotic initiation factor 4E family protein	complement(join(1470482..1470595,1470638..1470748,1470783..1470920,1470967..1471074))	Theileria parva strain Muguga	3501716
TpMuguga_02g00736	CDS	Tnks	NC_007345.1	1471429	1472397	R	Ankyrin repeats (3 copies) family protein	complement(join(1471429..1471604,1471647..1471704,1471764..1471817,1471860..1471981,1472015..1472043,1472117..1472397))	Theileria parva strain Muguga	3501717
TpMuguga_02g00737	CDS	Abcb6	NC_007345.1	1472425	1474595	R	ABC transporter family protein	complement(join(1472425..1472740,1472853..1473364,1473398..1474105,1474167..1474430,1474491..1474595))	Theileria parva strain Muguga	3501718
TpMuguga_02g00738	CDS	wdr3	NC_007345.1	1475004	1478528	R	WD domain G-beta repeat protein	complement(join(1475004..1475093,1475126..1475311,1475341..1475520,1475550..1475689,1475771..1475936,1476066..1476305,1476399..1477628,1477731..1477980,1478048..1478372,1478423..1478528))	Theileria parva strain Muguga	3501719
TpMuguga_02g00739	CDS	TpMuguga_02g00739	NC_007345.1	1478942	1480288	D	uncharacterized protein	1478942..1480288	Theileria parva strain Muguga	3501737
TpMuguga_02g00740	CDS	TpMuguga_02g00740	NC_007345.1	1480468	1482067	R	uncharacterized protein	complement(join(1480468..1480697,1480729..1480849,1480880..1481020,1481055..1481948,1481985..1482020,1482062..1482067))	Theileria parva strain Muguga	3501738
TpMuguga_02g02090	CDS	TpMuguga_02g02090	NC_007345.1	1482160	1482814	D	GPI-GlcNAc transferase complex PIG-H component family protein	join(1482160..1482276,1482315..1482396,1482484..1482599,1482634..1482711,1482740..1482814)	Theileria parva strain Muguga	86047687
TpMuguga_02g00741	CDS	DPM1	NC_007345.1	1482878	1484004	R	Glycosyl transferase family 2 family protein	complement(join(1482878..1482936,1482967..1483077,1483107..1483169,1483230..1483861,1483892..1484004))	Theileria parva strain Muguga	3501739
TpMuguga_02g00742	CDS	OTU2	NC_007345.1	1484127	1484923	D	OTU-like cysteine protease family protein	join(1484127..1484238,1484306..1484408,1484486..1484631,1484682..1484923)	Theileria parva strain Muguga	3501740
TpMuguga_02g00743	CDS	TpMuguga_02g00743	NC_007345.1	1485073	1486301	R	uncharacterized protein	complement(join(1485073..1485209,1485282..1485437,1485497..1485604,1485658..1486171,1486215..1486301))	Theileria parva strain Muguga	3501741
TpMuguga_02g00744	CDS	TpMuguga_02g00744	NC_007345.1	1486775	1488441	D	putative methyltransferase family protein	join(1486775..1487171,1487203..1487981,1488060..1488214,1488245..1488326,1488361..1488441)	Theileria parva strain Muguga	3501742
TpMuguga_02g00745	CDS	TpMuguga_02g00745	NC_007345.1	1488527	1489532	D	uncharacterized protein	join(1488527..1488773,1488825..1489137,1489175..1489532)	Theileria parva strain Muguga	3501785
TpMuguga_02g00747	CDS	TpMuguga_02g00747	NC_007345.1	1489541	1490571	R	uncharacterized protein	complement(join(1489541..1489987,1490023..1490101,1490167..1490206,1490328..1490571))	Theileria parva strain Muguga	3501786
TpMuguga_02g00746	CDS	asnS	NC_007345.1	1490743	1493067	D	asparagine--tRNA ligase	join(1490743..1492435,1492527..1492727,1492829..1493067)	Theileria parva strain Muguga	3501787
TpMuguga_02g00748	CDS	TpMuguga_02g00748	NC_007345.1	1493304	1494887	R	GAF domain protein	complement(1493304..1494887)	Theileria parva strain Muguga	3501788
TpMuguga_02g00749	CDS	TpMuguga_02g00749	NC_007345.1	1495870	1501054	D	uncharacterized protein	join(1495870..1500257,1500326..1500512,1500585..1500662,1500692..1500873,1500905..1500980,1501010..1501054)	Theileria parva strain Muguga	3501789
TpMuguga_02g00750	CDS	erf1	NC_007345.1	1501291	1502938	R	peptide chain release factor 1	complement(join(1501291..1501700,1501827..1502039,1502093..1502273,1502316..1502414,1502444..1502604,1502638..1502792,1502871..1502938))	Theileria parva strain Muguga	3501790
TpMuguga_02g00751	CDS	TpMuguga_02g00751	NC_007345.1	1503521	1503874	D	uncharacterized protein	1503521..1503874	Theileria parva strain Muguga	3501937
TpMuguga_02g00752	CDS	TpMuguga_02g00752	NC_007345.1	1504045	1505490	D	uncharacterized protein	1504045..1505490	Theileria parva strain Muguga	3501938
TpMuguga_02g00753	CDS	dnaK	NC_007345.1	1505548	1507593	R	chaperone protein DnaK	complement(1505548..1507593)	Theileria parva strain Muguga	3501939
TpMuguga_02g00754	CDS	TpMuguga_02g00754	NC_007345.1	1508364	1508895	D	uncharacterized protein	join(1508364..1508561,1508595..1508622,1508689..1508764,1508826..1508895)	Theileria parva strain Muguga	3501940
TpMuguga_02g00755	CDS	TpMuguga_02g00755	NC_007345.1	1508946	1510065	D	uncharacterized protein	join(1508946..1509733,1509764..1509831,1509887..1510065)	Theileria parva strain Muguga	3501941
TpMuguga_02g02635	CDS	TpMuguga_02g02635	NC_007345.1	1510676	1512151	R	uncharacterized protein	complement(join(1510676..1510759,1510792..1510848,1510884..1511093,1511125..1511272,1511302..1511390,1511442..1511537,1511610..1511744,1511862..1512002,1512071..1512151))	Theileria parva strain Muguga	3501943
TpMuguga_02g00758	CDS	TpMuguga_02g00758	NC_007345.1	1512455	1514377	R	uncharacterized protein	complement(1512455..1514377)	Theileria parva strain Muguga	3502012
TpMuguga_02g00759	CDS	TpMuguga_02g00759	NC_007345.1	1514951	1516618	R	Tpr-like protein	complement(join(1514951..1515249,1515286..1516618))	Theileria parva strain Muguga	3502013
TpMuguga_02g00760	CDS	TpMuguga_02g00760	NC_007345.1	1517116	1521111	R	uncharacterized protein	complement(1517116..1521111)	Theileria parva strain Muguga	3502014
TpMuguga_02g00761	CDS	TpMuguga_02g00761	NC_007345.1	1521144	1525800	R	uncharacterized protein	complement(join(1521144..1521192,1521287..1525800))	Theileria parva strain Muguga	3502015
TpMuguga_02g00762	CDS	TpMuguga_02g00762	NC_007345.1	1527624	1532514	R	uncharacterized protein	complement(join(1527624..1527692,1527724..1530225,1530268..1531368,1531492..1532514))	Theileria parva strain Muguga	3502016
TpMuguga_02g00763	CDS	TpMuguga_02g00763	NC_007345.1	1532597	1535325	R	uncharacterized protein	complement(join(1532597..1532636,1532657..1533020,1533084..1535325))	Theileria parva strain Muguga	3502017
TpMuguga_02g00764	CDS	TpMuguga_02g00764	NC_007345.1	1536092	1537613	R	U3 small nucleolar RNA-associated protein 18-like protein	complement(join(1536092..1536340,1536465..1536638,1536710..1536760,1536793..1536862,1536894..1537004,1537031..1537264,1537387..1537613))	Theileria parva strain Muguga	3502018
TpMuguga_02g02095	CDS	TpMuguga_02g02095	NC_007345.1	1538557	1538805	D	putative integral membrane protein	1538557..1538805	Theileria parva strain Muguga	86047688
TpMuguga_02g00766	CDS	polr1c	NC_007345.1	1539214	1540960	D	RNA polymerase Rpb3/RpoA insert domain protein	join(1539214..1539444,1539588..1539684,1539716..1539802,1539878..1539996,1540172..1540271,1540349..1540435,1540529..1540633,1540665..1540711,1540898..1540960)	Theileria parva strain Muguga	3501968
TpMuguga_02g00767	CDS	TpMuguga_02g00767	NC_007345.1	1541091	1541796	R	translation initiation factor eIF-1A; TP5	complement(join(1541091..1541373,1541494..1541578,1541662..1541745,1541781..1541796))	Theileria parva strain Muguga	3501969
TpMuguga_02g00768	CDS	rpn5b	NC_007345.1	1542029	1544036	R	PCI domain protein	complement(join(1542029..1542134,1542247..1542386,1542518..1542844,1542925..1543254,1543373..1543786,1543914..1544036))	Theileria parva strain Muguga	3501970
TpMuguga_02g00769	CDS	TpMuguga_02g00769	NC_007345.1	1544230	1545611	D	Di-sulfide bridge nucleocytoplasmic transport domain protein	join(1544230..1545168,1545285..1545611)	Theileria parva strain Muguga	3501971
TpMuguga_02g00770	CDS	TpMuguga_02g00770	NC_007345.1	1545694	1547531	R	putative integral membrane protein	complement(join(1545694..1546352,1546546..1547371,1547484..1547531))	Theileria parva strain Muguga	3501972
TpMuguga_02g00771	CDS	gyrA	NC_007345.1	1547750	1551704	R	DNA gyrase/topoisomerase IV subunit A family protein	complement(join(1547750..1548063,1548094..1548255,1548401..1548577,1548762..1549523,1549631..1550033,1550118..1550217,1550319..1550546,1550577..1550713,1550794..1550863,1550931..1551160,1551273..1551704))	Theileria parva strain Muguga	3501732
TpMuguga_02g00772	CDS	ATP9B	NC_007345.1	1552371	1556577	D	phospholipid-translocating P-type ATPase family protein	join(1552371..1552545,1552578..1552650,1552773..1555168,1555379..1556577)	Theileria parva strain Muguga	3501733
TpMuguga_02g00773	CDS	TpMuguga_02g00773	NC_007345.1	1556740	1557258	R	uncharacterized protein	complement(1556740..1557258)	Theileria parva strain Muguga	3501734
TpMuguga_02g00774	CDS	TpMuguga_02g00774	NC_007345.1	1557509	1559267	R	uncharacterized protein	complement(join(1557509..1557633,1557698..1559267))	Theileria parva strain Muguga	3501735
TpMuguga_02g02205	CDS	TpMuguga_02g02205	NC_007345.1	1559334	1559855	R	uncharacterized protein	complement(1559334..1559855)	Theileria parva strain Muguga	86047696
TpMuguga_02g02630	CDS	TpMuguga_02g02630	NC_007345.1	1559963	1560751	R	Ribosomal protein L7/L12 domain protein	complement(join(1559963..1560036,1560123..1560392,1560434..1560572,1560605..1560751))	Theileria parva strain Muguga	3501736
TpMuguga_02g02540	CDS	TpMuguga_02g02540	NC_007345.1	1560823	1562973	R	uncharacterized protein	complement(join(1560823..1560891,1560922..1561037,1561076..1561145,1561253..1561937,1562047..1562539,1562641..1562767,1562914..1562973))	Theileria parva strain Muguga	3501641
TpMuguga_02g02340	CDS	TpMuguga_02g02340	NC_007345.1	1563070	1568124	R	uncharacterized protein	complement(1563070..1568124)	Theileria parva strain Muguga	86047710
TpMuguga_02g00777	CDS	Zdhhc3	NC_007345.1	1568225	1569332	R	DHHC palmitoyltransferase family protein	complement(join(1568225..1568342,1568383..1568558,1568588..1568710,1568743..1568804,1568862..1568984,1569018..1569142,1569173..1569231,1569265..1569283,1569313..1569332))	Theileria parva strain Muguga	3501642
TpMuguga_02g02275	CDS	TpMuguga_02g02275	NC_007345.1	1569466	1569986	D	uncharacterized protein	join(1569466..1569486,1569529..1569620,1569648..1569759,1569819..1569986)	Theileria parva strain Muguga	86047701
TpMuguga_02g00778	CDS	TpMuguga_02g00778	NC_007345.1	1570174	1571127	D	uncharacterized protein	1570174..1571127	Theileria parva strain Muguga	3501643
TpMuguga_02g00779	CDS	TpMuguga_02g00779	NC_007345.1	1571161	1571643	R	uncharacterized protein	complement(join(1571161..1571221,1571253..1571329,1571361..1571408,1571440..1571643))	Theileria parva strain Muguga	3501644
TpMuguga_02g00780	CDS	RpS2	NC_007345.1	1571996	1572922	D	ribosomal protein S5	join(1571996..1572002,1572168..1572922)	Theileria parva strain Muguga	3501645
TpMuguga_02g00781	CDS	SFH3	NC_007345.1	1573794	1575179	D	CRAL/TRIO domain protein	join(1573794..1573847,1573947..1574080,1574136..1574235,1574320..1574500,1574615..1574956,1575052..1575179)	Theileria parva strain Muguga	3501646
TpMuguga_02g00782	CDS	TpMuguga_02g00782	NC_007345.1	1576740	1580870	D	uncharacterized protein	1576740..1580870	Theileria parva strain Muguga	3501665
TpMuguga_02g00783	CDS	isy1	NC_007345.1	1581475	1582325	R	Isy1-like splicing family protein	complement(join(1581475..1581678,1581753..1582325))	Theileria parva strain Muguga	3501666
TpMuguga_02g00784	CDS	HCCS	NC_007345.1	1582633	1583549	D	Cytochrome c1 heme lyase	join(1582633..1582807,1582935..1583094,1583181..1583267,1583348..1583549)	Theileria parva strain Muguga	3501667
TpMuguga_02g00785	CDS	TpMuguga_02g00785	NC_007345.1	1583893	1585935	D	uncharacterized protein	1583893..1585935	Theileria parva strain Muguga	3501668
TpMuguga_02g00786	CDS	ASF1	NC_007345.1	1586098	1587120	R	ASF1 like histone chaperone family protein	complement(join(1586098..1586541,1586779..1587120))	Theileria parva strain Muguga	3501669
TpMuguga_02g00787	CDS	smg1	NC_007345.1	1587410	1593912	D	Phosphatidylinositol 3- and 4-kinase family protein	join(1587410..1593210,1593444..1593912)	Theileria parva strain Muguga	3501670
TpMuguga_02g00788	CDS	TpMuguga_02g00788	NC_007345.1	1594744	1596951	D	uncharacterized protein	1594744..1596951	Theileria parva strain Muguga	3501671
TpMuguga_02g00789	CDS	TpMuguga_02g00789	NC_007345.1	1597163	1597813	R	uncharacterized protein	complement(1597163..1597813)	Theileria parva strain Muguga	3501458
TpMuguga_02g00790	CDS	Snip1	NC_007345.1	1598095	1599148	R	FHA domain protein	complement(join(1598095..1598164,1598225..1598308,1598402..1598537,1598729..1598810,1598876..1598955,1599037..1599148))	Theileria parva strain Muguga	3501459
TpMuguga_02g02320	CDS	TpMuguga_02g02320	NC_007345.1	1599183	1599989	R	B-box zinc finger family protein	complement(1599183..1599989)	Theileria parva strain Muguga	86047707
TpMuguga_02g00791	CDS	TpMuguga_02g00791	NC_007345.1	1600592	1602069	D	putative integral membrane protein	join(1600592..1601102,1601291..1602069)	Theileria parva strain Muguga	3501460
TpMuguga_02g00792	CDS	TpMuguga_02g00792	NC_007345.1	1603248	1603816	R	FUN14 family protein	complement(join(1603248..1603475,1603634..1603816))	Theileria parva strain Muguga	3501461
TpMuguga_02g02625	CDS	TpMuguga_02g02625	NC_007345.1	1603989	1606314	R	putative integral membrane protein	complement(join(1603989..1604899,1604982..1605077,1605360..1606314))	Theileria parva strain Muguga	3501463
TpMuguga_02g00795	CDS	TpMuguga_02g00795	NC_007345.1	1606630	1609767	D	uncharacterized protein	join(1606630..1606698,1606820..1607285,1607566..1607618,1607648..1607823,1608049..1608572,1608897..1609379,1609580..1609767)	Theileria parva strain Muguga	3501464
TpMuguga_02g00796	CDS	TpMuguga_02g00796	NC_007345.1	1610759	1612421	D	uncharacterized protein	join(1610759..1610966,1611060..1611692,1611916..1612421)	Theileria parva strain Muguga	3502265
TpMuguga_02g00797	CDS	TpMuguga_02g00797	NC_007345.1	1612698	1623647	D	uncharacterized protein	1612698..1623647	Theileria parva strain Muguga	3502266
TpMuguga_02g02025	CDS	TpMuguga_02g02025	NC_007345.1	1623740	1624073	R	uncharacterized protein	complement(join(1623740..1623887,1623970..1624073))	Theileria parva strain Muguga	86047679
TpMuguga_02g00798	CDS	ctu1	NC_007345.1	1624795	1626134	D	TIGR00269 family protein	join(1624795..1625749,1625959..1626134)	Theileria parva strain Muguga	3502267
TpMuguga_02g00799	CDS	ryh1	NC_007345.1	1626271	1627737	D	uncharacterized protein	join(1626271..1626289,1626684..1627007,1627081..1627141,1627191..1627230,1627388..1627505,1627631..1627737)	Theileria parva strain Muguga	3502268
TpMuguga_02g00800	CDS	TpMuguga_02g00800	NC_007345.1	1627782	1628745	D	putative integral membrane protein	join(1627782..1628159,1628262..1628456,1628512..1628745)	Theileria parva strain Muguga	3502269
TpMuguga_02g00801	CDS	RPL18	NC_007345.1	1628851	1629683	R	60S ribosomal protein L18-3	complement(join(1628851..1629146,1629354..1629609,1629681..1629683))	Theileria parva strain Muguga	3502270
TpMuguga_02g00802	CDS	TpMuguga_02g00802	NC_007345.1	1629853	1635457	D	uncharacterized protein	join(1629853..1629859,1630143..1635457)	Theileria parva strain Muguga	3502233
TpMuguga_02g00803	CDS	RPL18A	NC_007345.1	1636237	1636812	R	60S ribosomal protein L18a	complement(1636237..1636812)	Theileria parva strain Muguga	3502234
TpMuguga_02g00804	CDS	TpMuguga_02g00804	NC_007345.1	1637424	1638074	D	ATP synthase F0 subunit C	join(1637424..1637645,1637805..1638074)	Theileria parva strain Muguga	3502235
TpMuguga_02g00805	CDS	TpMuguga_02g00805	NC_007345.1	1638395	1639021	D	uncharacterized protein	1638395..1639021	Theileria parva strain Muguga	3502236
TpMuguga_02g00806	CDS	TpMuguga_02g00806	NC_007345.1	1639074	1639655	R	MerC mercury resistance family protein	complement(join(1639074..1639409,1639500..1639655))	Theileria parva strain Muguga	3502237
TpMuguga_02g00807	CDS	Ncl	NC_007345.1	1640454	1642512	D	or RNP domain; RBD; RRM; RNA recognition motif family protein	join(1640454..1640463,1640579..1641505,1641740..1642512)	Theileria parva strain Muguga	3502238
TpMuguga_02g00808	CDS	TpMuguga_02g00808	NC_007345.1	1642846	1644240	D	Leucine carboxyl methyltransferase family protein	join(1642846..1642901,1642933..1643018,1643048..1643325,1643376..1643440,1643473..1643536,1643571..1643797,1643839..1643926,1643959..1644240)	Theileria parva strain Muguga	3502239
TpMuguga_02g00963	CDS	TpMuguga_02g00963	NC_007345.1	1644428	1646860	R	uncharacterized protein	complement(1644428..1646860)	Theileria parva strain Muguga	3502362
TpMuguga_02g00809	CDS	Ttll11	NC_007345.1	1647161	1649461	R	Tubulin-tyrosine ligase family protein	complement(1647161..1649461)	Theileria parva strain Muguga	3502363
TpMuguga_02g00810	CDS	FNTB	NC_007345.1	1649646	1651362	D	farnesyltransferase subunit beta	join(1649646..1650406,1650504..1651362)	Theileria parva strain Muguga	3502364
TpMuguga_02g00811	CDS	TpMuguga_02g00811	NC_007345.1	1651423	1651927	R	uncharacterized protein	complement(join(1651423..1651473,1651526..1651927))	Theileria parva strain Muguga	3502365
TpMuguga_02g00812	CDS	TpMuguga_02g00812	NC_007345.1	1652267	1653997	R	putative integral membrane protein	complement(1652267..1653997)	Theileria parva strain Muguga	3502366
TpMuguga_02g00813	CDS	TpMuguga_02g00813	NC_007345.1	1654964	1655596	D	PITH domain protein	join(1654964..1655074,1655111..1655596)	Theileria parva strain Muguga	3502367
TpMuguga_02g00814	CDS	TpMuguga_02g00814	NC_007345.1	1655685	1656584	D	uncharacterized protein	1655685..1656584	Theileria parva strain Muguga	3502368
TpMuguga_02g00815	CDS	TpMuguga_02g00815	NC_007345.1	1656721	1657389	R	uncharacterized protein	complement(1656721..1657389)	Theileria parva strain Muguga	3502369
TpMuguga_02g00816	CDS	TpMuguga_02g00816	NC_007345.1	1657724	1658620	R	uncharacterized protein	complement(1657724..1658620)	Theileria parva strain Muguga	3501440
TpMuguga_02g00817	CDS	TpMuguga_02g00817	NC_007345.1	1658926	1661286	R	PPR repeat family protein	complement(join(1658926..1659298,1659333..1659748,1659830..1660581,1660614..1660769,1660799..1661098,1661193..1661286))	Theileria parva strain Muguga	3501441
TpMuguga_02g00818	CDS	TpMuguga_02g00818	NC_007345.1	1661768	1663570	R	uncharacterized protein	complement(1661768..1663570)	Theileria parva strain Muguga	3501442
TpMuguga_02g00819	CDS	TpMuguga_02g00819	NC_007345.1	1664033	1665115	R	uncharacterized protein	complement(1664033..1665115)	Theileria parva strain Muguga	3501443
TpMuguga_02g00820	CDS	TpMuguga_02g00820	NC_007345.1	1665426	1666992	R	or RNP domain; RBD; RRM; RNA recognition motif family protein	complement(join(1665426..1666471,1666581..1666728,1666894..1666992))	Theileria parva strain Muguga	3501444
TpMuguga_02g00821	CDS	USP39	NC_007345.1	1667154	1669721	R	Ubiquitin carboxyl-terminal hydrolase family protein	complement(join(1667154..1667227,1667342..1667524,1667666..1667867,1667977..1668046,1668106..1668193,1668224..1668341,1668446..1668607,1668638..1668693,1668758..1668854,1668909..1669045,1669077..1669211,1669307..1669721))	Theileria parva strain Muguga	3501445
TpMuguga_02g02440	CDS	TpMuguga_02g02440	NC_007345.1	1669904	1670092	R	uncharacterized protein	complement(1669904..1670092)	Theileria parva strain Muguga	86047721
TpMuguga_02g02335	CDS	TpMuguga_02g02335	NC_007345.1	1670369	1670566	D	putative integral membrane protein	1670369..1670566	Theileria parva strain Muguga	86047709
TpMuguga_02g02430	CDS	TpMuguga_02g02430	NC_007345.1	1670836	1673331	D	Enhancer of polycomb-like family protein	join(1670836..1670946,1671244..1671473,1671543..1671657,1671746..1671827,1671860..1671924,1672021..1672215,1672288..1672475,1672560..1673083,1673237..1673331)	Theileria parva strain Muguga	3501446
TpMuguga_02g00824	CDS	TpMuguga_02g00824	NC_007345.1	1673429	1674464	D	uncharacterized protein	join(1673429..1673518,1673551..1673634,1673752..1673784,1673815..1673991,1674185..1674322,1674417..1674464)	Theileria parva strain Muguga	3501448
TpMuguga_02g00825	CDS	TpMuguga_02g00825	NC_007345.1	1675290	1676798	D	putative integral membrane protein	join(1675290..1675493,1675615..1675757,1675878..1675946,1676179..1676369,1676451..1676505,1676536..1676641,1676727..1676798)	Theileria parva strain Muguga	3501449
TpMuguga_02g00826	CDS	CTP	NC_007345.1	1677140	1679554	R	Cytidylyltransferase family protein	complement(join(1677140..1677286,1677485..1678273,1678375..1678519,1678679..1678770,1678987..1679330,1679509..1679554))	Theileria parva strain Muguga	3501450
TpMuguga_02g00827	CDS	PRPF40A	NC_007345.1	1680056	1681784	R	WW domain protein	complement(join(1680056..1680085,1680371..1680517,1680637..1681180,1681258..1681562,1681716..1681784))	Theileria parva strain Muguga	3501451
TpMuguga_02g02545	CDS	ASNAP2	NC_007345.1	1681848	1683444	R	soluble N-ethylmaleimide-sensitive factor Attachment Protein)	complement(join(1681848..1681922,1682011..1682068,1682172..1682224,1682337..1682525,1682626..1682888,1682997..1683119,1683306..1683444))	Theileria parva strain Muguga	3501482
TpMuguga_02g00830	CDS	CDIPT	NC_007345.1	1683807	1685031	R	CDP-alcohol phosphatidyltransferase family protein	complement(join(1683807..1683896,1683965..1684011,1684044..1684139,1684239..1684315,1684347..1684401,1684484..1684582,1684750..1684884,1684986..1685031))	Theileria parva strain Muguga	3501484
TpMuguga_02g00831	CDS	Trmt61a	NC_007345.1	1685136	1686622	D	tRNA methyltransferase complex GCD14 subunit family protein	join(1685136..1685330,1685499..1685597,1685657..1685726,1685756..1685858,1685975..1686158,1686306..1686390,1686420..1686622)	Theileria parva strain Muguga	3501485
TpMuguga_02g00832	CDS	TpMuguga_02g00832	NC_007345.1	1686729	1688599	R	Myb-like DNA-binding domain protein	complement(join(1686729..1686836,1686965..1687489,1687592..1687850,1687938..1688599))	Theileria parva strain Muguga	3501486
TpMuguga_02g00833	CDS	glkA	NC_007345.1	1688883	1690319	R	Protein kinase domain protein	complement(join(1688883..1688940,1688972..1689022,1689062..1689141,1689172..1689217,1689317..1689370,1689402..1689508,1689596..1689714,1689846..1689891,1689906..1689996,1690030..1690319))	Theileria parva strain Muguga	3501587
TpMuguga_02g00834	CDS	TpMuguga_02g00834	NC_007345.1	1690962	1691290	D	uncharacterized protein	join(1690962..1691069,1691106..1691124,1691154..1691203,1691234..1691290)	Theileria parva strain Muguga	3501588
TpMuguga_02g00835	CDS	TpMuguga_02g00835	NC_007345.1	1691324	1692310	R	ADP-ribosylation factor family protein	complement(join(1691324..1691444,1691509..1691579,1691610..1691750,1691836..1692003,1692062..1692310))	Theileria parva strain Muguga	3501589
TpMuguga_02g00836	CDS	TpMuguga_02g00836	NC_007345.1	1692737	1693597	D	Single-strand binding family protein	join(1692737..1692976,1693033..1693146,1693177..1693265,1693333..1693391,1693446..1693597)	Theileria parva strain Muguga	3501590
TpMuguga_02g00837	CDS	TpMuguga_02g00837	NC_007345.1	1693831	1695622	D	DNA primase small subunit protein	join(1693831..1693885,1693974..1694021,1694071..1694159,1694213..1694285,1694380..1694925,1695001..1695213,1695264..1695332,1695449..1695565,1695597..1695622)	Theileria parva strain Muguga	3501591
TpMuguga_02g00838	CDS	pyrG	NC_007345.1	1695733	1698034	D	CTP synthase	join(1695733..1695903,1695933..1696097,1696223..1696495,1696576..1696689,1696734..1696817,1696948..1697179,1697212..1697271,1697436..1698034)	Theileria parva strain Muguga	3501954
TpMuguga_02g00839	CDS	PSME3	NC_007345.1	1698214	1699355	D	Proteasome activator pa28 beta subunit family protein	join(1698214..1698375,1698414..1698530,1698571..1698657,1698767..1698927,1699001..1699055,1699086..1699184,1699296..1699355)	Theileria parva strain Muguga	3501955
TpMuguga_02g00840	CDS	TpMuguga_02g00840	NC_007345.1	1699809	1701005	D	uncharacterized protein	1699809..1701005	Theileria parva strain Muguga	3501956
TpMuguga_02g00841	CDS	TpMuguga_02g00841	NC_007345.1	1701468	1702820	D	uncharacterized protein	1701468..1702820	Theileria parva strain Muguga	3501957
TpMuguga_02g00842	CDS	TpMuguga_02g00842	NC_007345.1	1706767	1708624	R	50S ribosome-binding GTPase family protein	complement(join(1706767..1706862,1706893..1706947,1706978..1707102,1707134..1708624))	Theileria parva strain Muguga	3501958
TpMuguga_02g00843	CDS	TpMuguga_02g00843	NC_007345.1	1708930	1711204	D	uncharacterized protein	join(1708930..1709212,1709247..1709611,1709645..1709981,1710012..1710084,1710115..1710471,1710503..1710650,1710681..1710752,1710788..1711204)	Theileria parva strain Muguga	3501959
TpMuguga_02g00844	CDS	TpMuguga_02g00844	NC_007345.1	1711215	1712223	R	putative integral membrane protein	complement(join(1711215..1711289,1711320..1711594,1711626..1711680,1711711..1711794,1711825..1711869,1711900..1712007,1712051..1712090,1712120..1712223))	Theileria parva strain Muguga	3501889
TpMuguga_02g02150	CDS	TpMuguga_02g02150	NC_007345.1	1712413	1713670	D	WD domain G-beta repeat protein	join(1712413..1712519,1712551..1712614,1712645..1712727,1712761..1713013,1713050..1713156,1713187..1713670)	Theileria parva strain Muguga	3501891
TpMuguga_02g00847	CDS	TpMuguga_02g00847	NC_007345.1	1713660	1714761	R	ELMO/CED-12 family protein	complement(join(1713660..1713803,1713834..1714262,1714317..1714511,1714564..1714761))	Theileria parva strain Muguga	3501892
TpMuguga_02g00848	CDS	ATP8A1	NC_007345.1	1715547	1724472	D	Adenylate and Guanylate cyclase catalytic domain protein	join(1715547..1716399,1716428..1719223,1719374..1719868,1720059..1720652,1720801..1721478,1721571..1722401,1722552..1722688,1722719..1723008,1723084..1723318,1723510..1723846,1723923..1724017,1724137..1724472)	Theileria parva strain Muguga	3501893
TpMuguga_02g00849	CDS	TpMuguga_02g00849	NC_007345.1	1724859	1725533	D	putative integral membrane protein	1724859..1725533	Theileria parva strain Muguga	3501919
TpMuguga_02g00850	CDS	TpMuguga_02g00850	NC_007345.1	1725631	1726182	R	Tpr-like protein	complement(1725631..1726182)	Theileria parva strain Muguga	3501920
TpMuguga_02g00851	CDS	TpMuguga_02g00851	NC_007345.1	1726540	1727649	R	putative integral membrane protein	complement(join(1726540..1726616,1726813..1726965,1727142..1727213,1727388..1727649))	Theileria parva strain Muguga	3501921
TpMuguga_02g00852	CDS	TpMuguga_02g00852	NC_007345.1	1727736	1728203	R	Urm1 (Ubiquitin related modifier) family protein	complement(1727736..1728203)	Theileria parva strain Muguga	3501922
TpMuguga_02g00853	CDS	pph-1	NC_007345.1	1728689	1730603	D	Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform	join(1728689..1729040,1729300..1729410,1729540..1729651,1729867..1730050,1730344..1730462,1730513..1730603)	Theileria parva strain Muguga	3501923
TpMuguga_02g00854	CDS	TpMuguga_02g00854	NC_007345.1	1730766	1732691	R	uncharacterized protein	complement(join(1730766..1732628,1732662..1732691))	Theileria parva strain Muguga	3501924
TpMuguga_02g00855	CDS	TpMuguga_02g00855	NC_007345.1	1733358	1735553	R	uncharacterized protein	complement(1733358..1735553)	Theileria parva strain Muguga	3501925
TpMuguga_02g00856	CDS	TpMuguga_02g00856	NC_007345.1	1735939	1737303	R	uncharacterized protein	complement(1735939..1737303)	Theileria parva strain Muguga	3502059
TpMuguga_02g00857	CDS	TpMuguga_02g00857	NC_007345.1	1738151	1738879	R	uncharacterized protein	complement(1738151..1738879)	Theileria parva strain Muguga	3502060
TpMuguga_02g00858	CDS	GPD	NC_007345.1	1740271	1741287	R	Glyceraldehyde-3-phosphate dehydrogenase	complement(1740271..1741287)	Theileria parva strain Muguga	3502061
TpMuguga_02g00859	CDS	TpMuguga_02g00859	NC_007345.1	1741639	1743309	R	uncharacterized protein	complement(1741639..1743309)	Theileria parva strain Muguga	3502062
TpMuguga_02g00860	CDS	TpMuguga_02g00860	NC_007345.1	1743902	1744642	R	putative integral membrane protein	complement(1743902..1744642)	Theileria parva strain Muguga	3502063
TpMuguga_02g00861	CDS	Ppm1g	NC_007345.1	1745570	1747739	D	Protein phosphatase 2C family protein	join(1745570..1745771,1746096..1746542,1746730..1747739)	Theileria parva strain Muguga	3502064
TpMuguga_02g02505	CDS	TpMuguga_02g02505	NC_007345.1	1748807	1750620	D	uncharacterized protein	join(1748807..1749569,1749971..1750620)	Theileria parva strain Muguga	3502066
TpMuguga_02g00864	CDS	TpMuguga_02g00864	NC_007345.1	1750910	1752522	D	haloacid dehalogenase-like hydrolase family protein	join(1750910..1751504,1751846..1752522)	Theileria parva strain Muguga	3502140
TpMuguga_02g00865	CDS	TpMuguga_02g00865	NC_007345.1	1752958	1753557	R	uncharacterized protein	complement(1752958..1753557)	Theileria parva strain Muguga	3502141
TpMuguga_02g00866	CDS	TpMuguga_02g00866	NC_007345.1	1753835	1754524	R	uncharacterized protein	complement(1753835..1754524)	Theileria parva strain Muguga	3502142
TpMuguga_02g00867	CDS	rps14	NC_007345.1	1754949	1756455	R	Ribosomal protein S14p/S29e family protein	complement(join(1754949..1755052,1755688..1755909,1755969..1756115,1756230..1756455))	Theileria parva strain Muguga	3502143
TpMuguga_02g00868	CDS	TpMuguga_02g00868	NC_007345.1	1756721	1761415	D	Trafficking protein particle complex subunit 10 TRAPPC10 family protein	join(1756721..1756760,1757004..1757600,1757913..1761415)	Theileria parva strain Muguga	3502144
TpMuguga_02g02525	CDS	dare	NC_007345.1	1763108	1764836	D	NAD(P)-binding Rossmann-like domain protein	join(1763108..1763335,1763493..1764836)	Theileria parva strain Muguga	3502145
TpMuguga_02g00870	CDS	TpMuguga_02g00870	NC_007345.1	1765082	1767670	D	uncharacterized protein	1765082..1767670	Theileria parva strain Muguga	3502146
TpMuguga_02g00871	CDS	TpMuguga_02g00871	NC_007345.1	1767980	1768471	D	uncharacterized protein	1767980..1768471	Theileria parva strain Muguga	3502159
TpMuguga_02g02145	CDS	TpMuguga_02g02145	NC_007345.1	1769027	1769578	D	ATP11 family protein	1769027..1769578	Theileria parva strain Muguga	86047691
TpMuguga_02g00872	CDS	TpMuguga_02g00872	NC_007345.1	1770334	1771611	D	uncharacterized protein	join(1770334..1770981,1771564..1771611)	Theileria parva strain Muguga	3502160
TpMuguga_02g00873	CDS	TpMuguga_02g00873	NC_007345.1	1771753	1772710	R	uncharacterized protein	complement(join(1771753..1772094,1772317..1772425,1772517..1772710))	Theileria parva strain Muguga	3502161
TpMuguga_02g00874	CDS	TpMuguga_02g00874	NC_007345.1	1772890	1773159	D	uncharacterized protein	join(1772890..1772986,1773092..1773159)	Theileria parva strain Muguga	3502162
TpMuguga_02g00875	CDS	TpMuguga_02g00875	NC_007345.1	1773182	1774216	D	uncharacterized protein	1773182..1774216	Theileria parva strain Muguga	3502163
TpMuguga_02g00876	CDS	TpMuguga_02g00876	NC_007345.1	1776214	1783284	R	uncharacterized protein	complement(1776214..1783284)	Theileria parva strain Muguga	3502164
TpMuguga_02g00877	CDS	TpMuguga_02g00877	NC_007345.1	1783854	1784684	D	uncharacterized protein	1783854..1784684	Theileria parva strain Muguga	3502165
TpMuguga_02g00878	CDS	TpMuguga_02g00878	NC_007345.1	1785083	1786276	D	uncharacterized protein	1785083..1786276	Theileria parva strain Muguga	3502166
TpMuguga_02g00879	CDS	TpMuguga_02g00879	NC_007345.1	1786437	1787030	R	ADP-ribosylation factor family protein	complement(1786437..1787030)	Theileria parva strain Muguga	3502198
TpMuguga_02g00880	CDS	TpMuguga_02g00880	NC_007345.1	1787131	1788152	R	putative integral membrane protein	complement(join(1787131..1787231,1787263..1787312,1787456..1787549,1787606..1788152))	Theileria parva strain Muguga	3502199
TpMuguga_02g00881	CDS	cwf26	NC_007345.1	1788293	1789663	R	Pre-mRNA-splicing factor of RES complex family protein	complement(join(1788293..1788355,1788511..1788626,1788730..1788812,1788847..1788962,1788994..1789026,1789185..1789269,1789423..1789471,1789501..1789663))	Theileria parva strain Muguga	3502200
TpMuguga_02g02085	CDS	TpMuguga_02g02085	NC_007345.1	1789733	1790065	D	putative integral membrane protein	1789733..1790065	Theileria parva strain Muguga	86047686
TpMuguga_02g00882	CDS	TpMuguga_02g00882	NC_007345.1	1790203	1791043	R	uncharacterized protein	complement(join(1790203..1790519,1790557..1790665,1790765..1791043))	Theileria parva strain Muguga	3502201
TpMuguga_02g00883	CDS	TpMuguga_02g00883	NC_007345.1	1791313	1793536	R	Papain family cysteine protease family protein	complement(join(1791313..1791566,1791616..1791678,1791710..1791846,1791876..1792012,1792065..1792204,1792260..1792315,1792357..1792846,1792881..1792934,1792964..1793019,1793094..1793362,1793441..1793536))	Theileria parva strain Muguga	3502202
TpMuguga_02g02220	CDS	TpMuguga_02g02220	NC_007345.1	1793801	1794331	D	Fcf2 pre-rRNA processing family protein	1793801..1794331	Theileria parva strain Muguga	86047697
TpMuguga_02g00884	CDS	TpMuguga_02g00884	NC_007345.1	1794363	1796963	R	Transcription factor/nuclear export subunit protein 2 family protein	complement(1794363..1796963)	Theileria parva strain Muguga	3502203
TpMuguga_02g00885	CDS	TpMuguga_02g00885	NC_007345.1	1797071	1799381	R	putative integral membrane protein	complement(join(1797071..1797146,1797193..1799381))	Theileria parva strain Muguga	3502285
TpMuguga_02g00886	CDS	TpMuguga_02g00886	NC_007345.1	1799550	1801367	R	Protein phosphatase 2C family protein	complement(join(1799550..1799627,1799760..1799915,1800003..1800753,1800790..1800920,1800968..1801309,1801344..1801367))	Theileria parva strain Muguga	3502286
TpMuguga_02g00887	CDS	TpMuguga_02g00887	NC_007345.1	1801431	1802496	R	THUMP domain protein	complement(join(1801431..1801508,1801538..1802164,1802214..1802330,1802458..1802496))	Theileria parva strain Muguga	3502287
TpMuguga_02g02070	CDS	TpMuguga_02g02070	NC_007345.1	1803401	1803937	D	uncharacterized protein	1803401..1803937	Theileria parva strain Muguga	86047684
TpMuguga_02g00888	CDS	TpMuguga_02g00888	NC_007345.1	1804422	1805504	D	uncharacterized protein	1804422..1805504	Theileria parva strain Muguga	3502288
TpMuguga_02g00889	CDS	TpMuguga_02g00889	NC_007345.1	1806000	1806527	D	uncharacterized protein	1806000..1806527	Theileria parva strain Muguga	3502289
TpMuguga_02g00890	CDS	TpMuguga_02g00890	NC_007345.1	1807027	1807818	D	uncharacterized protein	1807027..1807818	Theileria parva strain Muguga	3502290
TpMuguga_02g00891	CDS	TpMuguga_02g00891	NC_007345.1	1808375	1809229	D	uncharacterized protein	join(1808375..1808705,1808736..1809229)	Theileria parva strain Muguga	3502291
TpMuguga_02g00892	CDS	TpMuguga_02g00892	NC_007345.1	1809714	1810928	D	uncharacterized protein	1809714..1810928	Theileria parva strain Muguga	3502225
TpMuguga_02g00893	CDS	RPT6A	NC_007345.1	1811577	1812758	D	26S proteasome regulatory subunit 8-like protein	1811577..1812758	Theileria parva strain Muguga	3502226
TpMuguga_02g00894	CDS	TpMuguga_02g00894	NC_007345.1	1813179	1814255	D	uncharacterized protein	1813179..1814255	Theileria parva strain Muguga	3502227
TpMuguga_02g00895	CDS	TpMuguga_02g00895	NC_007345.1	1815280	1816284	D	Tp9	1815280..1816284	Theileria parva strain Muguga	3502228
TpMuguga_02g00896	CDS	TpMuguga_02g00896	NC_007345.1	1816779	1818101	D	uncharacterized protein	1816779..1818101	Theileria parva strain Muguga	3502229
TpMuguga_02g00897	CDS	TpMuguga_02g00897	NC_007345.1	1818182	1822853	R	putative integral membrane protein	complement(join(1818182..1819482,1819529..1819639,1819766..1822853))	Theileria parva strain Muguga	3502230
TpMuguga_02g00898	CDS	TpMuguga_02g00898	NC_007345.1	1823630	1826629	R	uncharacterized protein	complement(1823630..1826629)	Theileria parva strain Muguga	3502231
TpMuguga_02g00899	CDS	TpMuguga_02g00899	NC_007345.1	1827585	1831805	D	uncharacterized protein	1827585..1831805	Theileria parva strain Muguga	3502232
TpMuguga_02g00900	CDS	TpMuguga_02g00900	NC_007345.1	1831928	1832634	D	uncharacterized protein	join(1831928..1832233,1832281..1832634)	Theileria parva strain Muguga	3502127
TpMuguga_02g00901	CDS	CPR6	NC_007345.1	1832698	1834245	R	Peptidyl-prolyl cis-trans isomerase B domain protein	complement(join(1832698..1833215,1833284..1833821,1833851..1834026,1834061..1834134,1834169..1834245))	Theileria parva strain Muguga	3502128
TpMuguga_02g00902	CDS	TpMuguga_02g00902	NC_007345.1	1834689	1836477	D	Phosphatidylinositol-glycan biosynthesis class S family protein	join(1834689..1835007,1835042..1836099,1836181..1836477)	Theileria parva strain Muguga	3502129
TpMuguga_02g00903	CDS	ACT1	NC_007345.1	1836685	1837815	R	Actin-1	complement(1836685..1837815)	Theileria parva strain Muguga	3502130
TpMuguga_02g00904	CDS	TpMuguga_02g00904	NC_007345.1	1838091	1839078	D	uncharacterized protein	join(1838091..1838205,1838925..1838972,1839026..1839078)	Theileria parva strain Muguga	3502131
TpMuguga_02g00905	CDS	TpMuguga_02g00905	NC_007345.1	1839729	1841210	D	uncharacterized protein	join(1839729..1840314,1840375..1841210)	Theileria parva strain Muguga	3502132
TpMuguga_02g02075	CDS	TpMuguga_02g02075	NC_007345.1	1841248	1841947	R	uncharacterized protein	complement(join(1841248..1841522,1841583..1841725,1841756..1841837,1841902..1841947))	Theileria parva strain Muguga	86047685
TpMuguga_02g00906	CDS	tfdB	NC_007345.1	1841993	1843955	R	FAD binding domain protein	complement(join(1841993..1842036,1842068..1842197,1842227..1842391,1842424..1842533,1842573..1842771,1842802..1842963,1842994..1843583,1843617..1843754,1843787..1843955))	Theileria parva strain Muguga	3502088
TpMuguga_02g00907	CDS	TpMuguga_02g00907	NC_007345.1	1844246	1846546	R	uncharacterized protein	complement(1844246..1846546)	Theileria parva strain Muguga	3502089
TpMuguga_02g00908	CDS	TpMuguga_02g00908	NC_007345.1	1847263	1848101	R	putative integral membrane protein	complement(join(1847263..1847862,1847892..1848101))	Theileria parva strain Muguga	3502090
TpMuguga_02g00909	CDS	TpMuguga_02g00909	NC_007345.1	1848754	1849626	D	RNase P subunit p30 family protein	1848754..1849626	Theileria parva strain Muguga	3502091
TpMuguga_02g00910	CDS	TpMuguga_02g00910	NC_007345.1	1850212	1850757	D	uncharacterized protein	1850212..1850757	Theileria parva strain Muguga	3502092
TpMuguga_02g00911	CDS	TpMuguga_02g00911	NC_007345.1	1850759	1851379	D	DnaJ domain protein	1850759..1851379	Theileria parva strain Muguga	3502093
TpMuguga_02g00912	CDS	FEN1	NC_007345.1	1851550	1853988	R	Flap endonuclease 1	complement(join(1851550..1852425,1852472..1852518,1852548..1853988))	Theileria parva strain Muguga	3502094
TpMuguga_02g00913	CDS	ZRANB2	NC_007345.1	1854062	1854623	R	Zn-finger in Ran binding protein and others family protein	complement(join(1854062..1854199,1854260..1854332,1854365..1854419,1854455..1854519,1854583..1854623))	Theileria parva strain Muguga	3501905
TpMuguga_02g00914	CDS	TpMuguga_02g00914	NC_007345.1	1855556	1856101	D	uncharacterized protein	1855556..1856101	Theileria parva strain Muguga	3501906
TpMuguga_02g00915	CDS	TpMuguga_02g00915	NC_007345.1	1856103	1856723	D	DnaJ domain protein	1856103..1856723	Theileria parva strain Muguga	3501907
TpMuguga_02g00916	CDS	TpMuguga_02g00916	NC_007345.1	1856912	1860808	D	Guanylate-binding protein domain protein	join(1856912..1857104,1857789..1860808)	Theileria parva strain Muguga	3501908
TpMuguga_02g00917	CDS	FIGNL1	NC_007345.1	1860927	1862883	R	ATPase family associated with various cellular activities (AAA) family protein	complement(join(1860927..1862804,1862848..1862883))	Theileria parva strain Muguga	3501909
TpMuguga_02g00918	CDS	yrhG	NC_007345.1	1863642	1864511	D	Formate/nitrite transporter family protein	1863642..1864511	Theileria parva strain Muguga	3501910
TpMuguga_02g00919	CDS	TpMuguga_02g00919	NC_007345.1	1865265	1870570	D	FANCL domain protein	join(1865265..1870450,1870507..1870570)	Theileria parva strain Muguga	3501911
TpMuguga_02g00920	CDS	TMBIM6	NC_007345.1	1870697	1871553	D	Inhibitor of apoptosis-promoting Bax1 family protein	join(1870697..1870948,1870982..1871081,1871112..1871325,1871385..1871553)	Theileria parva strain Muguga	3501912
TpMuguga_02g00921	CDS	TpMuguga_02g00921	NC_007345.1	1872109	1872774	D	uncharacterized protein	1872109..1872774	Theileria parva strain Muguga	3501851
TpMuguga_02g00922	CDS	TpMuguga_02g00922	NC_007345.1	1872779	1875019	D	tRNA pseudouridine synthase D (TruD) family protein	1872779..1875019	Theileria parva strain Muguga	3501852
TpMuguga_02g00923	CDS	ykt6	NC_007345.1	1875254	1875859	D	Regulated-SNARE-like domain protein	1875254..1875859	Theileria parva strain Muguga	3501853
TpMuguga_02g00924	CDS	REV1	NC_007345.1	1876496	1878303	D	impB/mucB/samB family protein	join(1876496..1877763,1877793..1878303)	Theileria parva strain Muguga	3501854
TpMuguga_02g00925	CDS	DRT101	NC_007345.1	1878554	1880446	R	Phosphoacetylglucosamine mutase	complement(1878554..1880446)	Theileria parva strain Muguga	3501855
TpMuguga_02g00926	CDS	FACE1	NC_007345.1	1881456	1882980	D	Peptidase family M48 family protein	join(1881456..1881842,1881929..1882159,1882191..1882313,1882372..1882980)	Theileria parva strain Muguga	3501856
TpMuguga_02g00927	CDS	PSMA1	NC_007345.1	1883398	1884587	D	Proteasome subunit alpha type-1	join(1883398..1883529,1883650..1883860,1883962..1884092,1884160..1884299,1884408..1884501,1884531..1884587)	Theileria parva strain Muguga	3501857
TpMuguga_02g00928	CDS	FACE1	NC_007345.1	1884692	1886228	D	Peptidase family M48 family protein	join(1884692..1885072,1885140..1885370,1885420..1885545,1885576..1885897,1885954..1886228)	Theileria parva strain Muguga	3501858
TpMuguga_02g00929	CDS	FACE1	NC_007345.1	1886675	1888219	D	Peptidase family M48 family protein	join(1886675..1887061,1887137..1887367,1887398..1887520,1887584..1888219)	Theileria parva strain Muguga	3501859
TpMuguga_02g00930	CDS	PSMA1	NC_007345.1	1888604	1889805	D	Proteasome subunit alpha type-1	join(1888604..1888735,1888856..1889066,1889180..1889310,1889378..1889517,1889626..1889719,1889749..1889805)	Theileria parva strain Muguga	3501860
TpMuguga_02g02015	CDS	TpMuguga_02g02015	NC_007345.1	1889869	1891156	D	uncharacterized protein	join(1889869..1889959,1889989..1890601,1890634..1890817,1890848..1891156)	Theileria parva strain Muguga	86047678
TpMuguga_02g00931	CDS	TpMuguga_02g00931	NC_007345.1	1892175	1895523	R	von Willebrand factor type D domain protein	complement(join(1892175..1892438,1892513..1892972,1893015..1893138,1893204..1895135,1895167..1895382,1895415..1895523))	Theileria parva strain Muguga	3501861
TpMuguga_02g00932	CDS	TpMuguga_02g00932	NC_007345.1	1896149	1896598	D	uncharacterized protein	join(1896149..1896464,1896504..1896598)	Theileria parva strain Muguga	3501862
TpMuguga_02g00933	CDS	RBP47A	NC_007345.1	1897139	1899344	D	or RNP domain; RBD; RRM; RNA recognition motif family protein	join(1897139..1898392,1898494..1898830,1898908..1899344)	Theileria parva strain Muguga	3501823
TpMuguga_02g00934	CDS	EDE1	NC_007345.1	1899467	1901348	R	Cytoskeletal-regulatory complex EF hand family protein	complement(join(1899467..1899597,1899698..1901348))	Theileria parva strain Muguga	3501824
TpMuguga_02g00935	CDS	glmS	NC_007345.1	1902342	1905023	D	SIS domain protein	join(1902342..1902424,1902540..1903892,1903961..1904483,1904550..1905023)	Theileria parva strain Muguga	3501825
TpMuguga_02g00936	CDS	TpMuguga_02g00936	NC_007345.1	1905148	1906023	R	ATP12 chaperone family protein	complement(1905148..1906023)	Theileria parva strain Muguga	3501826
TpMuguga_02g00937	CDS	CCT6	NC_007345.1	1906393	1908128	D	T-complex protein 1 subunit zeta	join(1906393..1907706,1907796..1908128)	Theileria parva strain Muguga	3501827
TpMuguga_02g00938	CDS	TpMuguga_02g00938	NC_007345.1	1908717	1922951	D	uncharacterized protein	join(1908717..1910751,1910862..1912683,1912768..1912916,1912952..1913414,1913503..1915797,1915834..1920245,1920346..1922951)	Theileria parva strain Muguga	3501828
TpMuguga_02g00939	CDS	TpMuguga_02g00939	NC_007345.1	1923036	1924094	R	uncharacterized protein	complement(1923036..1924094)	Theileria parva strain Muguga	3501829
TpMuguga_02g00940	CDS	ABCC2	NC_007345.1	1925226	1929785	D	ABC transporter family protein	1925226..1929785	Theileria parva strain Muguga	3501770
TpMuguga_02g00941	CDS	TpMuguga_02g00941	NC_007345.1	1930096	1932956	D	Aldo/keto reductase family protein	join(1930096..1931359,1931389..1931479,1931522..1931687,1931717..1931886,1931919..1932078,1932107..1932181,1932213..1932278,1932308..1932413,1932444..1932567,1932598..1932718,1932816..1932956)	Theileria parva strain Muguga	3501771
TpMuguga_02g00942	CDS	TpMuguga_02g00942	NC_007345.1	1932991	1934371	R	putative integral membrane protein	complement(join(1932991..1933925,1933957..1934371))	Theileria parva strain Muguga	3501772
TpMuguga_02g00943	CDS	fcp1	NC_007345.1	1934791	1937100	R	NLI interacting factor-like phosphatase family protein	complement(1934791..1937100)	Theileria parva strain Muguga	3501773
TpMuguga_02g00944	CDS	PPP5C	NC_007345.1	1937820	1939677	R	Calcineurin-like phosphoesterase family protein	complement(join(1937820..1937928,1938009..1938730,1938763..1938834,1938863..1938936,1938967..1939038,1939067..1939174,1939205..1939321,1939401..1939677))	Theileria parva strain Muguga	3501774
TpMuguga_02g00945	CDS	TXNDC9	NC_007345.1	1940157	1941083	D	Phosducin family protein	join(1940157..1940207,1940320..1940439,1940473..1940580,1940614..1940711,1940762..1940883,1940926..1940990,1941030..1941083)	Theileria parva strain Muguga	3501775
TpMuguga_02g00964	CDS	TpMuguga_02g00964	NC_007345.1	1941185	1941800	D	uncharacterized protein	join(1941185..1941344,1941408..1941598,1941636..1941800)	Theileria parva strain Muguga	3501707
TpMuguga_02g00948	CDS	TpMuguga_02g00948	NC_007345.1	1941788	1942883	R	uncharacterized protein	complement(join(1941788..1941873,1941952..1942084,1942115..1942192,1942223..1942414,1942445..1942525,1942581..1942638,1942678..1942883))	Theileria parva strain Muguga	3501708
TpMuguga_02g00949	CDS	RPS8	NC_007345.1	1943641	1944355	D	Ribosomal protein S8e family protein	join(1943641..1943851,1943969..1944121,1944153..1944355)	Theileria parva strain Muguga	3501709
TpMuguga_02g00950	CDS	TpMuguga_02g00950	NC_007345.1	1944893	1946185	D	uncharacterized protein	1944893..1946185	Theileria parva strain Muguga	3501710
TpMuguga_02g00951	CDS	ABCC4	NC_007345.1	1947157	1951794	R	ABC transporter family protein	complement(1947157..1951794)	Theileria parva strain Muguga	3501711
TpMuguga_02g00952	CDS	TpMuguga_02g00952	NC_007345.1	1953493	1954686	D	uncharacterized protein	1953493..1954686	Theileria parva strain Muguga	3501712
TpMuguga_02g00953	CDS	TpMuguga_02g00953	NC_007345.1	1955355	1956551	D	SVSP family protein	1955355..1956551	Theileria parva strain Muguga	3501713
TpMuguga_02g00954	CDS	TpMuguga_02g00954	NC_007345.1	1956808	1958241	D	SVSP family protein	1956808..1958241	Theileria parva strain Muguga	3501700
TpMuguga_02g00955	CDS	TpMuguga_02g00955	NC_007345.1	1958470	1960155	D	SVSP family protein	1958470..1960155	Theileria parva strain Muguga	3501701
TpMuguga_02g00956	CDS	TpMuguga_02g00956	NC_007345.1	1960449	1961927	D	SVSP family protein	1960449..1961927	Theileria parva strain Muguga	3501702
TpMuguga_02g00957	CDS	TpMuguga_02g00957	NC_007345.1	1963011	1963232	D	SVSP family protein	1963011..1963232	Theileria parva strain Muguga	3501703
TpMuguga_02g00958	CDS	TpMuguga_02g00958	NC_007345.1	1963876	1965903	D	Tp28; SVSP family protein	1963876..1965903	Theileria parva strain Muguga	3501704
TpMuguga_02g00959	CDS	TpMuguga_02g00959	NC_007345.1	1966161	1967213	D	SVSP family protein	1966161..1967213	Theileria parva strain Muguga	3501705
TpMuguga_02g00960	CDS	TpMuguga_02g00960	NC_007345.1	1967761	1969335	D	uncharacterized protein	1967761..1969335	Theileria parva strain Muguga	3501706
TpMuguga_02g02420	CDS	TpMuguga_02g02420	NC_007345.1	1970139	1970324	D	putative integral membrane protein	1970139..1970324	Theileria parva strain Muguga	86047719
TpMuguga_03g00001	CDS	TpMuguga_03g00001	NW_876245.1	2862	4451	R	uncharacterized protein	complement(2862..4451)	Theileria parva strain Muguga	3499973
TpMuguga_03g00002	CDS	TpMuguga_03g00002	NW_876245.1	4998	6473	R	SVSP family protein	complement(4998..6473)	Theileria parva strain Muguga	3499974
TpMuguga_03g00003	CDS	TpMuguga_03g00003	NW_876245.1	7036	8511	R	SVSP family protein	complement(7036..8511)	Theileria parva strain Muguga	3499975
TpMuguga_03g02670	CDS	TpMuguga_03g02670	NW_876245.1	9127	10101	R	SVSP family protein	complement(9127..10101)	Theileria parva strain Muguga	3499976
TpMuguga_03g02430	CDS	TpMuguga_03g02430	NW_876245.1	10947	11228	R	uncharacterized protein	complement(10947..11228)	Theileria parva strain Muguga	86047779
TpMuguga_03g00893	CDS	TpMuguga_03g00893	NW_876245.1	11804	13510	R	SVSP family protein	complement(11804..13510)	Theileria parva strain Muguga	3499987
TpMuguga_03g00005	CDS	TpMuguga_03g00005	NW_876245.1	13740	15242	R	SVSP family protein	complement(13740..15242)	Theileria parva strain Muguga	3499988
TpMuguga_03g00006	CDS	TpMuguga_03g00006	NW_876245.1	15819	16445	R	uncharacterized protein	complement(15819..16445)	Theileria parva strain Muguga	86047739
TpMuguga_03g00007	CDS	ABCC4	NW_876245.1	17374	21963	D	ABC transporter family protein	17374..21963	Theileria parva strain Muguga	3499990
TpMuguga_03g02610	CDS	TpMuguga_03g02610	NW_876245.1	22501	25236	R	putative integral membrane protein	complement(22501..25236)	Theileria parva strain Muguga	3499991
TpMuguga_03g00009	CDS	TpMuguga_03g00009	NW_876245.1	26044	26754	R	uncharacterized protein	complement(26044..26754)	Theileria parva strain Muguga	3499992
TpMuguga_03g00010	CDS	ZBTB8OS	NW_876245.1	27243	28094	R	Archease protein family (MTH1598/TM1083) family protein	complement(27243..28094)	Theileria parva strain Muguga	3499993
TpMuguga_03g00012	CDS	rplO	NW_876245.1	28511	30458	R	ribosomal protein L15	complement(join(28511..28723,28816..28884,28914..29125,29156..29336,29367..29476,29583..29773,29806..29870,29901..30046,30158..30458))	Theileria parva strain Muguga	3499994
TpMuguga_03g00011	CDS	TpMuguga_03g00011	NW_876245.1	30325	31005	D	ribosomal protein L17	join(30325..30389,30582..31005)	Theileria parva strain Muguga	3499962
TpMuguga_03g00013	CDS	Lace1	NW_876245.1	31118	33174	R	AFG1-like ATPase family protein	complement(join(31118..31214,31331..31474,31503..31606,31652..31721,31972..32513,32629..33174))	Theileria parva strain Muguga	3499963
TpMuguga_03g02250	CDS	TpMuguga_03g02250	NW_876245.1	33211	33749	R	uncharacterized protein	complement(join(33211..33576,33633..33749))	Theileria parva strain Muguga	86047765
TpMuguga_03g00014	CDS	TpMuguga_03g00014	NW_876245.1	34156	35751	R	Chromo (CHRromatin Organization MOdifier) domain protein	complement(join(34156..34261,34338..34561,34734..35121,35186..35262,35412..35471,35503..35751))	Theileria parva strain Muguga	3499964
TpMuguga_03g00015	CDS	TpMuguga_03g00015	NW_876245.1	36126	38042	R	ATP-dependent protease La (LON) domain protein	complement(join(36126..36426,36455..36573,36668..36772,37033..37197,37380..38042))	Theileria parva strain Muguga	3499965
TpMuguga_03g02460	CDS	NRPB12	NW_876245.1	38113	38976	D	DNA-directed RNA polymerases II IV and V subunit 12	join(38113..38173,38303..38395,38954..38976)	Theileria parva strain Muguga	3499966
TpMuguga_03g02465	CDS	TpMuguga_03g02465	NW_876245.1	38976	40318	D	PUB domain protein	join(38976..39012,39042..39223,39253..39339,39369..39562,39592..39902,40122..40318)	Theileria parva strain Muguga	3499877
TpMuguga_03g00018	CDS	TpMuguga_03g00018	NW_876245.1	40425	40886	D	uncharacterized protein	join(40425..40556,40589..40621,40722..40886)	Theileria parva strain Muguga	3499878
TpMuguga_03g00019	CDS	TpMuguga_03g00019	NW_876245.1	41026	42312	R	uncharacterized protein	complement(41026..42312)	Theileria parva strain Muguga	3499879
TpMuguga_03g00020	CDS	Wbscr22	NW_876245.1	42664	44047	D	Ribosome biogenesis methyltransferase WBSCR22	join(42664..42702,42737..42841,42884..42995,43267..43441,43498..43653,43685..43871,43988..44047)	Theileria parva strain Muguga	3499880
TpMuguga_03g00021	CDS	TpMuguga_03g00021	NW_876245.1	44363	46546	R	uncharacterized protein	complement(44363..46546)	Theileria parva strain Muguga	3499881
TpMuguga_03g02475	CDS	TpMuguga_03g02475	NW_876245.1	46829	47910	R	DNA-(apurinic or apyrimidinic site) lyase	complement(join(46829..46882,46913..46978,47015..47061,47092..47174,47205..47272,47335..47407,47438..47474,47532..47623,47749..47798,47863..47910))	Theileria parva strain Muguga	3499882
TpMuguga_03g02435	CDS	TpMuguga_03g02435	NW_876245.1	48340	49387	R	uncharacterized protein	complement(join(48340..49149,49217..49387))	Theileria parva strain Muguga	86047780
TpMuguga_03g00023	CDS	TpMuguga_03g00023	NW_876245.1	49749	50891	D	U3 small nucleolar RNA-associated protein 6 family protein	49749..50891	Theileria parva strain Muguga	3499883
TpMuguga_03g00024	CDS	Dnajc8	NW_876245.1	50907	52855	R	DnaJ domain protein	complement(join(50907..51068,51299..51400,51478..51623,51677..51802,52261..52321,52419..52570,52600..52855))	Theileria parva strain Muguga	3499884
TpMuguga_03g00025	CDS	spm2	NW_876245.1	52991	54255	R	Ubiquitin-conjugating enzyme E2 variant 1	complement(join(52991..53134,53351..53500,54062..54208,54247..54255))	Theileria parva strain Muguga	3499885
TpMuguga_03g00026	CDS	CTDSPL	NW_876245.1	54463	55595	R	dullard-like phosphatase domain protein	complement(join(54463..54939,55277..55357,55389..55595))	Theileria parva strain Muguga	3499886
TpMuguga_03g00027	CDS	POLR2J	NW_876245.1	56099	56716	D	RNA polymerase Rpb3/Rpb11 dimerization domain protein	join(56099..56172,56234..56323,56415..56586,56693..56716)	Theileria parva strain Muguga	3499887
TpMuguga_03g02355	CDS	TpMuguga_03g02355	NW_876245.1	56922	61212	D	uncharacterized protein	join(56922..56962,57069..58658,58883..58965,59137..59196,59226..59732,60140..60181,60211..60329,60393..60866,61035..61126,61155..61212)	Theileria parva strain Muguga	3499889
TpMuguga_03g00030	CDS	TpMuguga_03g00030	NW_876245.1	61267	62673	R	uncharacterized protein	complement(join(61267..62480,62592..62673))	Theileria parva strain Muguga	3500001
TpMuguga_03g00031	CDS	TpMuguga_03g00031	NW_876245.1	63603	64376	D	uncharacterized protein	63603..64376	Theileria parva strain Muguga	3500002
TpMuguga_03g00032	CDS	TpMuguga_03g00032	NW_876245.1	64692	65570	D	uncharacterized protein	64692..65570	Theileria parva strain Muguga	3500003
TpMuguga_03g00033	CDS	vha-15	NW_876245.1	65906	68465	R	V-ATPase subunit H family protein	complement(join(65906..66078,66193..66318,66379..66443,66595..66695,66725..66811,67032..67237,67511..67639,67825..67953,68192..68465))	Theileria parva strain Muguga	3500004
TpMuguga_03g02325	CDS	TpMuguga_03g02325	NW_876245.1	68735	71013	R	RED-like protein N-terminal region family protein	complement(join(68735..69102,69223..69285,69318..69378,69559..69708,69783..70037,70711..70834,70866..70910,70946..71013))	Theileria parva strain Muguga	3500005
TpMuguga_03g00036	CDS	U1A	NW_876245.1	71154	73103	D	U1 small nuclear ribonucleoprotein A	join(71154..71277,71329..71550,71898..72364,72579..72750,73048..73103)	Theileria parva strain Muguga	3499955
TpMuguga_03g00037	CDS	exosc3	NW_876245.1	73163	74086	R	putative exosome complex component rrp40	complement(join(73163..73277,73325..73393,73424..73583,73645..73735,73981..74046,74075..74086))	Theileria parva strain Muguga	3499956
TpMuguga_03g00038	CDS	TpMuguga_03g00038	NW_876245.1	74225	75355	R	uncharacterized protein	complement(74225..75355)	Theileria parva strain Muguga	3499957
TpMuguga_03g00039	CDS	TpMuguga_03g00039	NW_876245.1	76507	77112	R	uncharacterized protein	complement(76507..77112)	Theileria parva strain Muguga	3499958
TpMuguga_03g00040	CDS	TpMuguga_03g00040	NW_876245.1	77252	78565	R	uncharacterized protein	complement(77252..78565)	Theileria parva strain Muguga	3499959
TpMuguga_03g00041	CDS	TpMuguga_03g00041	NW_876245.1	79495	82226	D	putative integral membrane protein	join(79495..79596,79642..79710,80404..80591,80804..80993,81260..81741,81935..82226)	Theileria parva strain Muguga	3499960
TpMuguga_03g00042	CDS	TpMuguga_03g00042	NW_876245.1	82271	82633	R	uncharacterized protein	complement(82271..82633)	Theileria parva strain Muguga	3499961
TpMuguga_03g00043	CDS	TpMuguga_03g00043	NW_876245.1	82680	83293	R	Kinase phosphorylation family protein	complement(join(82680..82746,82972..83128,83182..83293))	Theileria parva strain Muguga	3499890
TpMuguga_03g00044	CDS	TpMuguga_03g00044	NW_876245.1	83528	84613	R	WD domain G-beta repeat protein	complement(83528..84613)	Theileria parva strain Muguga	86047740
TpMuguga_03g00045	CDS	TpMuguga_03g00045	NW_876245.1	85015	86609	D	putative integral membrane protein	join(85015..85033,85189..86609)	Theileria parva strain Muguga	3499892
TpMuguga_03g00046	CDS	TpMuguga_03g00046	NW_876245.1	86980	88242	D	SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein	join(86980..87276,87389..87721,88024..88072,88103..88242)	Theileria parva strain Muguga	3499893
TpMuguga_03g00047	CDS	Gsk3a	NW_876245.1	88322	89924	R	Protein kinase domain protein	complement(join(88322..88794,88991..89600,89781..89924))	Theileria parva strain Muguga	3499894
TpMuguga_03g00048	CDS	pyrABCN	NW_876245.1	90983	97519	D	Carbamoyl-phosphate synthase L chain ATP binding domain protein	join(90983..91022,91255..91499,91662..92619,92698..93015,93153..93413,93508..93681,93813..93928,93981..94497,94625..95347,95480..95758,95880..96129,96257..96794,96896..97519)	Theileria parva strain Muguga	3499895
TpMuguga_03g00049	CDS	DCP2	NW_876245.1	98001	99026	D	Dcp2 box A domain protein	98001..99026	Theileria parva strain Muguga	3500007
TpMuguga_03g00050	CDS	RPL24	NW_876245.1	99430	100164	D	Ribosomal protein L24e family protein	join(99430..99609,99753..99905,100030..100164)	Theileria parva strain Muguga	3500008
TpMuguga_03g00051	CDS	TpMuguga_03g00051	NW_876245.1	100303	100933	R	uncharacterized protein	complement(join(100303..100793,100870..100933))	Theileria parva strain Muguga	3500009
TpMuguga_03g00052	CDS	crp-6	NW_876245.1	101345	101724	R	40S ribosomal protein S27-2	complement(join(101345..101426,101558..101724))	Theileria parva strain Muguga	3500010
TpMuguga_03g00053	CDS	TpMuguga_03g00053	NW_876245.1	102443	103120	R	Double-stranded DNA-binding domain protein	complement(join(102443..102481,102514..102552,102583..102648,102720..102781,102812..102876,102907..102935,103073..103120))	Theileria parva strain Muguga	3500011
TpMuguga_03g00054	CDS	TpMuguga_03g00054	NW_876245.1	103248	104830	R	uncharacterized protein	complement(join(103248..103699,103777..104830))	Theileria parva strain Muguga	3500012
TpMuguga_03g00055	CDS	TpMuguga_03g00055	NW_876245.1	104957	106811	R	uncharacterized protein	complement(join(104957..105293,105344..106113,106178..106279,106347..106811))	Theileria parva strain Muguga	3500013
TpMuguga_03g00056	CDS	ctse-b	NW_876245.1	107112	109522	R	Eukaryotic aspartyl protease family protein	complement(join(107112..107224,107298..107771,107825..107910,107943..107995,108064..108220,108253..108292,108359..108483,108907..108959,108995..109522))	Theileria parva strain Muguga	3500391
TpMuguga_03g00057	CDS	ispD	NW_876245.1	110003	111316	D	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase family protein	110003..111316	Theileria parva strain Muguga	3500392
TpMuguga_03g00058	CDS	CETN1	NW_876245.1	111716	112785	D	Centrin-1	join(111716..111860,112013..112080,112119..112205,112309..112389,112461..112520,112699..112785)	Theileria parva strain Muguga	3500393
TpMuguga_03g00059	CDS	TpMuguga_03g00059	NW_876245.1	113230	116610	D	CW-type Zinc Finger family protein	113230..116610	Theileria parva strain Muguga	3500394
TpMuguga_03g00060	CDS	TpMuguga_03g00060	NW_876245.1	117099	117527	D	uncharacterized protein	117099..117527	Theileria parva strain Muguga	3500395
TpMuguga_03g02520	CDS	bms1	NW_876245.1	117830	120961	D	Ribosome biogenesis protein bms1	join(117830..118287,118320..118787,118853..119728,119759..119866,119912..119991,120086..120195,120226..120654,120686..120961)	Theileria parva strain Muguga	3499977
TpMuguga_03g00063	CDS	STP2	NW_876245.1	121104	122525	R	Sugar (and other) transporter family protein	complement(121104..122525)	Theileria parva strain Muguga	3499978
TpMuguga_03g00064	CDS	STP2	NW_876245.1	123047	124474	R	Sugar (and other) transporter family protein	complement(123047..124474)	Theileria parva strain Muguga	3499979
TpMuguga_03g02215	CDS	TpMuguga_03g02215	NW_876245.1	129208	130622	D	putative integral membrane protein	join(129208..129631,129664..129747,129781..130622)	Theileria parva strain Muguga	86047761
TpMuguga_03g00065	CDS	cysS	NW_876245.1	130703	133076	R	cysteine--tRNA ligase	complement(join(130703..130750,130780..130932,130962..131025,131054..131217,131258..131365,131400..131558,131600..131783,131813..132098,132128..132447,132479..132552,132587..132778,132822..133076))	Theileria parva strain Muguga	3499980
TpMuguga_03g02285	CDS	TpMuguga_03g02285	NW_876245.1	133145	135261	D	RAP domain protein	join(133145..133271,133399..133616,133647..133878,133909..134046,134077..134246,134283..134432,134464..134925,134986..135261)	Theileria parva strain Muguga	3499981
TpMuguga_03g02675	CDS	TpMuguga_03g02675	NW_876245.1	135298	135935	D	uncharacterized protein	join(135298..135391,135430..135471,135503..135558,135591..135666,135699..135769,135804..135866,135906..135935)	Theileria parva strain Muguga	86047791
TpMuguga_03g00067	CDS	TpMuguga_03g00067	NW_876245.1	136120	136575	D	Alba family protein	join(136120..136185,136278..136440,136484..136575)	Theileria parva strain Muguga	3500014
TpMuguga_03g00068	CDS	TpMuguga_03g00068	NW_876245.1	136860	137215	D	putative integral membrane protein	join(136860..136874,136912..136985,137019..137082,137123..137166,137200..137215)	Theileria parva strain Muguga	3500015
TpMuguga_03g00069	CDS	Cnot3	NW_876245.1	137262	137971	D	NOT2 / NOT3 / NOT5 family protein	join(137262..137304,137359..137397,137433..137629,137700..137853,137916..137971)	Theileria parva strain Muguga	3500016
TpMuguga_03g00070	CDS	TpMuguga_03g00070	NW_876245.1	138142	138990	D	uncharacterized protein	138142..138990	Theileria parva strain Muguga	3500017
TpMuguga_03g00071	CDS	TpMuguga_03g00071	NW_876245.1	139043	141349	D	uncharacterized protein	join(139043..139224,139260..139338,139369..139486,139553..139738,139800..139960,140039..140165,140233..140336,140382..140488,140615..140902,141062..141155,141186..141257,141290..141349)	Theileria parva strain Muguga	3500018
TpMuguga_03g00072	CDS	TpMuguga_03g00072	NW_876245.1	141493	142101	R	Thioesterase superfamily protein	complement(141493..142101)	Theileria parva strain Muguga	3500019
TpMuguga_03g00073	CDS	TpMuguga_03g00073	NW_876245.1	142710	143288	D	uncharacterized protein	142710..143288	Theileria parva strain Muguga	3500403
TpMuguga_03g00074	CDS	TpMuguga_03g00074	NW_876245.1	143393	144404	R	uncharacterized protein	complement(join(143393..143434,143464..143545,143629..144169,144287..144404))	Theileria parva strain Muguga	3500404
TpMuguga_03g00075	CDS	TpMuguga_03g00075	NW_876245.1	144761	145572	D	uncharacterized protein	join(144761..144850,144950..145066,145106..145150,145184..145247,145312..145490,145522..145572)	Theileria parva strain Muguga	3500405
TpMuguga_03g00076	CDS	TpMuguga_03g00076	NW_876245.1	145619	146178	R	CS domain protein	complement(join(145619..146112,146148..146178))	Theileria parva strain Muguga	3500406
TpMuguga_03g00077	CDS	TpMuguga_03g00077	NW_876245.1	146346	148243	R	uncharacterized protein	complement(join(146346..146510,146629..147522,147644..147930,148012..148243))	Theileria parva strain Muguga	3500407
TpMuguga_03g00078	CDS	fumB	NW_876245.1	148463	151372	R	Fumarate hydratase class I anaerobic	complement(join(148463..148818,148945..149139,149330..149404,149436..149495,149602..149704,149817..149950,150091..150190,150396..150561,150649..150780,150828..151372))	Theileria parva strain Muguga	3500408
TpMuguga_03g00079	CDS	TpMuguga_03g00079	NW_876245.1	151964	154578	D	putative integral membrane protein	join(151964..152066,152181..152369,152511..152789,152867..154578)	Theileria parva strain Muguga	3500020
TpMuguga_03g00080	CDS	TpMuguga_03g00080	NW_876245.1	154736	155431	R	uncharacterized protein	complement(154736..155431)	Theileria parva strain Muguga	3500021
TpMuguga_03g00081	CDS	TpMuguga_03g00081	NW_876245.1	155833	156327	R	uncharacterized protein	complement(155833..156327)	Theileria parva strain Muguga	3500022
TpMuguga_03g00082	CDS	TpMuguga_03g00082	NW_876245.1	156704	159776	R	uncharacterized protein	complement(join(156704..156874,157015..157155,157205..157310,157382..157482,157692..159776))	Theileria parva strain Muguga	3500023
TpMuguga_03g00083	CDS	TpMuguga_03g00083	NW_876245.1	160233	161036	R	DExH-box splicing factor binding site family protein	complement(160233..161036)	Theileria parva strain Muguga	3500024
TpMuguga_03g00084	CDS	gcs-1	NW_876245.1	161337	164178	D	Glutamate-cysteine ligase family protein	join(161337..162111,162179..163696,163868..164178)	Theileria parva strain Muguga	3500025
TpMuguga_03g00085	CDS	TpMuguga_03g00085	NW_876245.1	164405	165518	D	uncharacterized protein	join(164405..164839,165069..165518)	Theileria parva strain Muguga	3500026
TpMuguga_03g00086	CDS	TpMuguga_03g00086	NW_876245.1	165829	167760	R	uncharacterized protein	complement(165829..167760)	Theileria parva strain Muguga	3500027
TpMuguga_03g00087	CDS	FLAD1	NW_876245.1	168147	169410	R	Phosphoadenosine phosphosulfate reductase family protein	complement(join(168147..168252,168397..168651,168903..169002,169033..169148,169181..169410))	Theileria parva strain Muguga	3500028
TpMuguga_03g00088	CDS	pab2	NW_876245.1	169579	170642	D	Polyadenylate-binding protein 2	join(169579..169635,169733..169819,170014..170120,170171..170258,170330..170418,170585..170642)	Theileria parva strain Muguga	3500029
TpMuguga_03g00089	CDS	TpMuguga_03g00089	NW_876245.1	171733	172716	D	Cyclin-dependent kinase regulatory subunit family protein	171733..172716	Theileria parva strain Muguga	3500030
TpMuguga_03g00090	CDS	TpMuguga_03g00090	NW_876245.1	173023	174350	D	uncharacterized protein	join(173023..173209,173500..174350)	Theileria parva strain Muguga	3500031
TpMuguga_03g00092	CDS	redB	NW_876245.1	174354	178206	R	Flavodoxin family protein	complement(join(174354..174453,174483..174571,174772..174944,175205..175466,175812..176087,176330..176424,176453..176492,176568..176639,176669..176826,176872..177017,177271..177419,177449..177556,177819..177973,178071..178206))	Theileria parva strain Muguga	3500032
TpMuguga_03g00093	CDS	TpMuguga_03g00093	NW_876245.1	178557	181788	R	AP2 domain protein	complement(join(178557..179556,179907..180693,181008..181788))	Theileria parva strain Muguga	3500033
TpMuguga_03g02175	CDS	TpMuguga_03g02175	NW_876245.1	183109	185929	D	Filamin/ABP280 repeat family protein	join(183109..183225,183359..183496,183840..183912,184012..184074,184106..184140,184236..184282,184311..184386,184415..184466,184499..184569,184927..185031,185062..185375,185680..185929)	Theileria parva strain Muguga	3500034
TpMuguga_03g02315	CDS	TpMuguga_03g02315	NW_876245.1	186228	188570	D	Divergent CRAL/TRIO domain protein	join(186228..186343,186448..186674,187039..187838,188202..188570)	Theileria parva strain Muguga	3500037
TpMuguga_03g00098	CDS	TpMuguga_03g00098	NW_876245.1	188662	189239	D	putative integral membrane protein	join(188662..188748,188850..189239)	Theileria parva strain Muguga	3500038
TpMuguga_03g00099	CDS	TpMuguga_03g00099	NW_876245.1	189944	190651	R	uncharacterized protein	complement(189944..190651)	Theileria parva strain Muguga	3500039
TpMuguga_03g00100	CDS	DJ1B	NW_876245.1	191275	192319	R	DJ-1 family protein	complement(join(191275..191399,191545..191755,191941..192144,192209..192319))	Theileria parva strain Muguga	3500040
TpMuguga_03g00101	CDS	TpMuguga_03g00101	NW_876245.1	192442	193905	R	putative membrane protein (DUF2053) family protein	complement(join(192442..192571,192871..193152,193500..193564,193595..193651,193681..193753,193829..193905))	Theileria parva strain Muguga	3500041
TpMuguga_03g00102	CDS	TpMuguga_03g00102	NW_876245.1	194392	197747	D	Ring finger domain protein	join(194392..195288,195375..195651,195979..197747)	Theileria parva strain Muguga	3500042
TpMuguga_03g00103	CDS	TpMuguga_03g00103	NW_876245.1	198019	198612	R	uncharacterized protein	complement(198019..198612)	Theileria parva strain Muguga	3500043
TpMuguga_03g00104	CDS	TpMuguga_03g00104	NW_876245.1	198884	199618	R	uncharacterized protein	complement(198884..199618)	Theileria parva strain Muguga	3500044
TpMuguga_03g00105	CDS	TpMuguga_03g00105	NW_876245.1	199951	200591	R	uncharacterized protein	complement(join(199951..200205,200523..200591))	Theileria parva strain Muguga	3500045
TpMuguga_03g00106	CDS	RPL18	NW_876245.1	201732	202426	D	Ribosomal L18p/L5e family protein	join(201732..201837,201991..202111,202366..202426)	Theileria parva strain Muguga	3500046
TpMuguga_03g00107	CDS	TpMuguga_03g00107	NW_876245.1	202622	205709	D	uncharacterized protein	join(202622..204152,204404..205385,205481..205709)	Theileria parva strain Muguga	3500047
TpMuguga_03g00108	CDS	sec1	NW_876245.1	206829	209169	R	Sec1 family protein	complement(join(206829..208807,209142..209169))	Theileria parva strain Muguga	3500048
TpMuguga_03g00109	CDS	TpMuguga_03g00109	NW_876245.1	209682	212399	R	Lipase maturation factor family protein	complement(209682..212399)	Theileria parva strain Muguga	3500049
TpMuguga_03g00110	CDS	trxr2	NW_876245.1	213014	216376	D	thioredoxin and glutathione reductase family protein	join(213014..213559,213615..213752,214091..214221,214313..214379,214612..214758,214977..215058,215116..215300,215367..215447,215856..215952,216108..216376)	Theileria parva strain Muguga	3500050
TpMuguga_03g00111	CDS	TpMuguga_03g00111	NW_876245.1	216460	218914	D	Condensin complex subunit 2 family protein	join(216460..217078,217632..218914)	Theileria parva strain Muguga	3500051
TpMuguga_03g00112	CDS	TpMuguga_03g00112	NW_876245.1	219621	221890	R	uncharacterized protein	complement(join(219621..220048,220079..220166,220265..220672,220991..221324,221435..221691,221723..221890))	Theileria parva strain Muguga	3500052
TpMuguga_03g00113	CDS	TpMuguga_03g00113	NW_876245.1	222143	222709	R	uncharacterized protein	complement(222143..222709)	Theileria parva strain Muguga	3500053
TpMuguga_03g00114	CDS	TpMuguga_03g00114	NW_876245.1	223161	228334	R	uncharacterized protein	complement(join(223161..228201,228285..228334))	Theileria parva strain Muguga	3500054
TpMuguga_03g00115	CDS	TpMuguga_03g00115	NW_876245.1	229066	229335	D	Transcription factor TFIIH complex subunit Tfb5 family protein	join(229066..229100,229130..229244,229273..229335)	Theileria parva strain Muguga	3500056
TpMuguga_03g02495	CDS	ARL2	NW_876245.1	229386	230261	R	ADP-ribosylation factor-like protein 2	complement(join(229386..229520,229551..229631,229707..229869,229900..230010,230197..230261))	Theileria parva strain Muguga	3500058
TpMuguga_03g00118	CDS	TpMuguga_03g00118	NW_876245.1	230560	232716	R	putative integral membrane protein	complement(join(230560..232511,232593..232716))	Theileria parva strain Muguga	3500059
TpMuguga_03g02565	CDS	TpMuguga_03g02565	NW_876245.1	232786	236147	D	uncharacterized protein	join(232786..233193,233226..233270,233445..233711,233742..236147)	Theileria parva strain Muguga	3500060
TpMuguga_03g00121	CDS	TpMuguga_03g00121	NW_876245.1	236291	236692	R	uncharacterized protein	complement(236291..236692)	Theileria parva strain Muguga	3500062
TpMuguga_03g02445	CDS	TpMuguga_03g02445	NW_876245.1	236958	237317	R	uncharacterized protein	complement(236958..237317)	Theileria parva strain Muguga	86047782
TpMuguga_03g00122	CDS	TpMuguga_03g00122	NW_876245.1	237432	239219	R	uncharacterized protein	complement(237432..239219)	Theileria parva strain Muguga	3500063
TpMuguga_03g00123	CDS	TpMuguga_03g00123	NW_876245.1	239305	241141	D	uncharacterized protein	join(239305..240324,240434..240553,240586..240797,240871..240945,240976..241141)	Theileria parva strain Muguga	3500064
TpMuguga_03g00124	CDS	ogdh	NW_876245.1	241326	245006	R	Transketolase pyrimidine binding domain protein	complement(join(241326..242049,242270..242522,242553..243348,243441..243508,243539..243845,243917..244115,244168..244454,244484..244626,244661..244736,244797..245006))	Theileria parva strain Muguga	3500065
TpMuguga_03g00125	CDS	TpMuguga_03g00125	NW_876245.1	245247	245811	R	putative integral membrane protein	complement(join(245247..245486,245518..245811))	Theileria parva strain Muguga	3500066
TpMuguga_03g00126	CDS	TpMuguga_03g00126	NW_876245.1	246438	247439	D	transcription elongation factor S-II protein	246438..247439	Theileria parva strain Muguga	3500067
TpMuguga_03g00127	CDS	TpMuguga_03g00127	NW_876245.1	247818	248342	D	uncharacterized protein	247818..248342	Theileria parva strain Muguga	3500068
TpMuguga_03g00128	CDS	Smarca2	NW_876245.1	248322	252470	R	SNF2 family protein	complement(join(248322..249019,249181..249816,249871..250015,250147..250274,250389..250599,250646..250755,250820..251046,251157..251272,251340..252470))	Theileria parva strain Muguga	3500069
TpMuguga_03g00129	CDS	TpMuguga_03g00129	NW_876245.1	253030	254227	R	CRAL/TRIO domain protein	complement(join(253030..253145,253178..253556,253656..253970,254099..254227))	Theileria parva strain Muguga	3500070
TpMuguga_03g00130	CDS	TpMuguga_03g00130	NW_876245.1	255106	255615	R	Erv1 / Alr family protein	complement(join(255106..255154,255232..255321,255361..255497,255529..255615))	Theileria parva strain Muguga	3500072
TpMuguga_03g00131	CDS	engB	NW_876245.1	255730	257161	D	50S ribosome-binding GTPase family protein	join(255730..255832,255921..256075,256108..256221,256269..256429,256462..257161)	Theileria parva strain Muguga	3500073
TpMuguga_03g02440	CDS	TpMuguga_03g02440	NW_876245.1	257241	257462	R	putative integral membrane protein	complement(257241..257462)	Theileria parva strain Muguga	86047781
TpMuguga_03g00132	CDS	TpMuguga_03g00132	NW_876245.1	257575	258260	D	uncharacterized protein	join(257575..257647,257774..257986,258028..258074,258120..258260)	Theileria parva strain Muguga	3500074
TpMuguga_03g00134	CDS	TpMuguga_03g00134	NW_876245.1	259074	259649	D	putative integral membrane protein	259074..259649	Theileria parva strain Muguga	3500077
TpMuguga_03g00135	CDS	TpMuguga_03g00135	NW_876245.1	259974	260546	D	putative integral membrane protein	259974..260546	Theileria parva strain Muguga	3500078
TpMuguga_03g00136	CDS	TpMuguga_03g00136	NW_876245.1	261110	261679	D	uncharacterized protein	261110..261679	Theileria parva strain Muguga	3500079
TpMuguga_03g00137	CDS	metG	NW_876245.1	261946	264720	D	tRNA synthetases class I (M) family protein	join(261946..262195,262242..262593,262659..264720)	Theileria parva strain Muguga	3500080
TpMuguga_03g02415	CDS	TpMuguga_03g02415	NW_876245.1	265699	267370	D	uncharacterized protein	join(265699..265804,265926..266002,266035..266464,266495..266538,266570..266890,266985..267129,267246..267370)	Theileria parva strain Muguga	3500081
TpMuguga_03g00140	CDS	CDKC-2	NW_876245.1	267489	269435	D	Protein kinase domain protein	267489..269435	Theileria parva strain Muguga	3500083
TpMuguga_03g00141	CDS	TpMuguga_03g00141	NW_876245.1	269842	271265	D	uncharacterized protein	join(269842..269871,270000..270185,270271..270370,270443..270516,270603..270657,270724..270849,270883..271019,271085..271165,271206..271265)	Theileria parva strain Muguga	3500084
TpMuguga_03g00142	CDS	TpMuguga_03g00142	NW_876245.1	271389	272741	R	Anion-transporting ATPase family protein	complement(join(271389..271486,271521..271617,271649..271873,271923..272175,272230..272363,272449..272556,272586..272741))	Theileria parva strain Muguga	3500397
TpMuguga_03g00143	CDS	TpMuguga_03g00143	NW_876245.1	272883	275150	D	uncharacterized protein	join(272883..273033,273118..275150)	Theileria parva strain Muguga	3500398
TpMuguga_03g00144	CDS	AQR	NW_876245.1	275321	280703	D	AAA domain protein	join(275321..275744,275827..280703)	Theileria parva strain Muguga	3500399
TpMuguga_03g00145	CDS	TpMuguga_03g00145	NW_876245.1	281031	281876	D	Synaptobrevin family protein	join(281031..281143,281176..281248,281278..281352,281384..281473,281505..281589,281620..281789,281823..281876)	Theileria parva strain Muguga	3500400
TpMuguga_03g00146	CDS	ALPHA-ADR	NW_876245.1	282297	285451	D	Adaptin N terminal region family protein	join(282297..283487,283559..283828,283890..283957,284021..285155,285242..285330,285361..285451)	Theileria parva strain Muguga	3500401
TpMuguga_03g00147	CDS	TpMuguga_03g00147	NW_876245.1	285816	287309	D	uncharacterized protein	285816..287309	Theileria parva strain Muguga	3500402
TpMuguga_03g00148	CDS	TpMuguga_03g00148	NW_876245.1	287514	291815	D	uncharacterized protein	287514..291815	Theileria parva strain Muguga	3500085
TpMuguga_03g00149	CDS	TpMuguga_03g00149	NW_876245.1	292306	293979	D	uncharacterized protein	292306..293979	Theileria parva strain Muguga	3500086
TpMuguga_03g00150	CDS	TpMuguga_03g00150	NW_876245.1	294431	295076	D	uncharacterized protein	join(294431..294457,294539..294718,294770..294892,295005..295076)	Theileria parva strain Muguga	3500087
TpMuguga_03g00151	CDS	TpMuguga_03g00151	NW_876245.1	295743	296189	D	uncharacterized protein	295743..296189	Theileria parva strain Muguga	3500088
TpMuguga_03g00152	CDS	HTR8	NW_876245.1	297006	297416	D	histone H3.3	297006..297416	Theileria parva strain Muguga	3500089
TpMuguga_03g00153	CDS	TpMuguga_03g00153	NW_876245.1	297952	300264	D	putative integral membrane protein	297952..300264	Theileria parva strain Muguga	3500090
TpMuguga_03g00154	CDS	TpMuguga_03g00154	NW_876245.1	300525	301206	D	uncharacterized protein	join(300525..300851,300881..301018,301090..301206)	Theileria parva strain Muguga	3500091
TpMuguga_03g00155	CDS	TpMuguga_03g00155	NW_876245.1	301197	302088	R	Translation initiation factor eIF3 subunit family protein	complement(join(301197..301220,301262..301332,301406..301571,301637..301731,301765..301874,301923..301977,302031..302088))	Theileria parva strain Muguga	3500092
TpMuguga_03g02685	CDS	GWT1	NW_876245.1	302394	304602	D	GWT1 family protein	join(302394..302798,302861..303003,303098..303172,303204..303259,303338..303408,303442..303502,303543..303701,303732..303863,303917..304058,304097..304166,304218..304299,304379..304602)	Theileria parva strain Muguga	3500094
TpMuguga_03g00158	CDS	TpMuguga_03g00158	NW_876245.1	304808	306587	R	uncharacterized protein	complement(join(304808..304936,304984..305184,305217..305358,305421..305540,305576..305604,305703..306587))	Theileria parva strain Muguga	3500095
TpMuguga_03g00159	CDS	TpMuguga_03g00159	NW_876245.1	306840	308135	R	uncharacterized protein	complement(306840..308135)	Theileria parva strain Muguga	3500096
TpMuguga_03g00160	CDS	TpMuguga_03g00160	NW_876245.1	308246	309803	R	S-adenosyl-L-homocysteine hydrolase family protein	complement(join(308246..309375,309464..309803))	Theileria parva strain Muguga	3500097
TpMuguga_03g00161	CDS	TpMuguga_03g00161	NW_876245.1	310766	312220	D	uncharacterized protein	join(310766..312010,312065..312117,312148..312220)	Theileria parva strain Muguga	3500098
TpMuguga_03g00162	CDS	nth-1	NW_876245.1	312272	313799	R	Endonuclease III-like protein	complement(join(312272..312410,312442..312566,312609..312968,313008..313525,313685..313799))	Theileria parva strain Muguga	3500099
TpMuguga_03g00163	CDS	Rpl19	NW_876245.1	314077	314863	D	60S ribosomal protein L19-1	join(314077..314079,314327..314863)	Theileria parva strain Muguga	3500100
TpMuguga_03g00164	CDS	TpMuguga_03g00164	NW_876245.1	314976	317013	R	Iron only hydrogenase large subunit domain protein	complement(join(314976..315518,315562..317013))	Theileria parva strain Muguga	3500101
TpMuguga_03g02275	CDS	TpMuguga_03g02275	NW_876245.1	317278	317412	R	uncharacterized protein	complement(317278..317412)	Theileria parva strain Muguga	86047768
TpMuguga_03g00165	CDS	Abcc5	NW_876245.1	318144	323860	D	ABC transporter family protein	join(318144..318726,318782..320212,320306..321325,321430..321755,321841..321944,322085..322553,322679..322994,323120..323768,323797..323860)	Theileria parva strain Muguga	3500102
TpMuguga_03g00166	CDS	TpMuguga_03g00166	NW_876245.1	324000	324635	D	uncharacterized protein	join(324000..324155,324186..324315,324428..324526,324586..324635)	Theileria parva strain Muguga	3500103
TpMuguga_03g00167	CDS	TpMuguga_03g00167	NW_876245.1	324782	325715	D	putative integral membrane protein	join(324782..324989,325084..325146,325177..325441,325607..325715)	Theileria parva strain Muguga	3500104
TpMuguga_03g00168	CDS	TpMuguga_03g00168	NW_876245.1	325834	333125	D	putative integral membrane protein	join(325834..327580,327685..329583,329686..333125)	Theileria parva strain Muguga	3500105
TpMuguga_03g00169	CDS	TpMuguga_03g00169	NW_876245.1	333519	334238	D	uncharacterized protein	333519..334238	Theileria parva strain Muguga	3500106
TpMuguga_03g00170	CDS	TpMuguga_03g00170	NW_876245.1	334432	341687	D	uncharacterized protein	join(334432..334930,335018..335797,335868..335973,336035..341687)	Theileria parva strain Muguga	3500107
TpMuguga_03g00171	CDS	CPSF73-II	NW_876245.1	341929	344718	R	Beta-Casp domain protein	complement(join(341929..342003,342036..342109,342139..342394,342506..342613,342644..342733,342775..342887,342953..342994,343087..343441,343520..343686,343788..344173,344266..344404,344436..344718))	Theileria parva strain Muguga	3500108
TpMuguga_03g00172	CDS	cmtr2	NW_876245.1	345129	348991	D	FtsJ-like methyltransferase family protein	join(345129..345310,345386..345536,345611..345824,345918..346070,346102..346172,346206..346294,346382..346635,346669..347837,347936..348073,348140..348444,348589..348778,348863..348991)	Theileria parva strain Muguga	3500109
TpMuguga_03g02570	CDS	TpMuguga_03g02570	NW_876245.1	349051	350415	R	uncharacterized protein	complement(join(349051..349153,349189..349270,349352..349485,349517..349585,349624..349716,349748..349806,349836..349941,350076..350198,350270..350415))	Theileria parva strain Muguga	3500110
TpMuguga_03g00175	CDS	TpMuguga_03g00175	NW_876245.1	351034	352077	D	putative integral membrane protein	join(351034..351745,351839..352077)	Theileria parva strain Muguga	3500112
TpMuguga_03g00176	CDS	SRV2	NW_876245.1	352450	353149	D	Adenylate cyclase associated (CAP) C terminal family protein	join(352450..352495,352659..353149)	Theileria parva strain Muguga	3500113
TpMuguga_03g02605	CDS	TpMuguga_03g02605	NW_876245.1	353270	354105	R	SAP domain protein	complement(join(353270..353338,353440..353479,353514..353661,353701..353935,353995..354105))	Theileria parva strain Muguga	3500114
TpMuguga_03g00179	CDS	TpMuguga_03g00179	NW_876245.1	354376	356273	R	PhoD-like phosphatase family protein	complement(join(354376..354599,354742..354901,355004..355262,355375..355660,355759..355884,355994..356273))	Theileria parva strain Muguga	3500116
TpMuguga_03g00180	CDS	invs	NW_876245.1	356486	358702	R	Ankyrin repeats (3 copies) family protein	complement(356486..358702)	Theileria parva strain Muguga	3500117
TpMuguga_03g02595	CDS	METTL18	NW_876245.1	359404	360454	R	putative methyltransferase family protein	complement(join(359404..360011,360094..360205,360272..360454))	Theileria parva strain Muguga	86047787
TpMuguga_03g00181	CDS	TpMuguga_03g00181	NW_876245.1	360690	362942	R	uncharacterized protein	complement(360690..362942)	Theileria parva strain Muguga	3500118
TpMuguga_03g00182	CDS	TpMuguga_03g00182	NW_876245.1	363359	365023	R	putative integral membrane protein	complement(join(363359..363471,363506..363996,364062..365023))	Theileria parva strain Muguga	3500119
TpMuguga_03g00183	CDS	CCT1	NW_876245.1	365245	367425	R	T-complex protein 1 subunit alpha	complement(join(365245..365448,365505..365648,365701..365897,365961..366095,366146..366321,366428..366846,366909..367031,367103..367293,367368..367425))	Theileria parva strain Muguga	3500120
TpMuguga_03g00184	CDS	TpMuguga_03g00184	NW_876245.1	368216	369833	R	LEM3 (ligand-effect modulator 3) family / CDC50 family protein	complement(join(368216..368361,368394..368462,368492..368762,368865..369151,369257..369833))	Theileria parva strain Muguga	3500121
TpMuguga_03g00185	CDS	polr2a	NW_876245.1	370281	375326	R	RNA polymerase Rpb1 domain 1 family protein	complement(370281..375326)	Theileria parva strain Muguga	3500122
TpMuguga_03g00186	CDS	Stoml2	NW_876245.1	375528	377084	R	SPFH domain / Band 7 family protein	complement(join(375528..375631,375694..375852,375990..376182,376215..376316,376350..376484,376523..376576,376665..376800,376906..377084))	Theileria parva strain Muguga	3500123
TpMuguga_03g00187	CDS	TpMuguga_03g00187	NW_876245.1	377225	377990	R	uncharacterized protein	complement(join(377225..377297,377336..377360,377479..377601,377682..377738,377768..377990))	Theileria parva strain Muguga	3500124
TpMuguga_03g00188	CDS	TpMuguga_03g00188	NW_876245.1	378137	379234	R	uncharacterized protein	complement(378137..379234)	Theileria parva strain Muguga	3500125
TpMuguga_03g02305	CDS	TpMuguga_03g02305	NW_876245.1	379716	380081	D	uncharacterized protein	379716..380081	Theileria parva strain Muguga	86047770
TpMuguga_03g02380	CDS	TpMuguga_03g02380	NW_876245.1	380308	381215	D	uncharacterized protein	join(380308..380468,380502..380569,380659..380673,380707..380738,380797..380850,380891..380930,380996..381060,381183..381215)	Theileria parva strain Muguga	3500126
TpMuguga_03g00191	CDS	rpl21	NW_876245.1	381329	382042	D	Ribosomal prokaryotic L21 family protein	381329..382042	Theileria parva strain Muguga	3500128
TpMuguga_03g00192	CDS	infB	NW_876245.1	382121	385541	R	Elongation factor Tu GTP binding domain protein	complement(join(382121..382248,382341..382593,382803..382865,382959..383303,383423..384496,384594..385541))	Theileria parva strain Muguga	3500129
TpMuguga_03g00193	CDS	TpMuguga_03g00193	NW_876245.1	385925	386965	R	uncharacterized protein	complement(385925..386965)	Theileria parva strain Muguga	3500130
TpMuguga_03g00194	CDS	TpMuguga_03g00194	NW_876245.1	387168	388274	R	uncharacterized protein	complement(387168..388274)	Theileria parva strain Muguga	3500131
TpMuguga_03g00195	CDS	RH29	NW_876245.1	389130	391850	D	DEAD/DEAH box helicase family protein	join(389130..389839,389991..390039,390090..391850)	Theileria parva strain Muguga	3500132
TpMuguga_03g00196	CDS	TpMuguga_03g00196	NW_876245.1	392008	394164	R	uncharacterized protein	complement(join(392008..392594,392700..394164))	Theileria parva strain Muguga	3500133
TpMuguga_03g00197	CDS	TpMuguga_03g00197	NW_876245.1	394447	396903	R	uncharacterized protein	complement(join(394447..396530,396849..396903))	Theileria parva strain Muguga	3500134
TpMuguga_03g02545	CDS	rpoA	NW_876245.1	397580	400058	D	DNA-directed RNA polymerase subunit alpha	join(397580..397856,397962..398059,398205..398252,398389..398758,398959..399526,399671..400058)	Theileria parva strain Muguga	3500136
TpMuguga_03g00200	CDS	TpMuguga_03g00200	NW_876245.1	400196	403033	R	uncharacterized protein	complement(join(400196..400333,400506..400658,400775..403033))	Theileria parva strain Muguga	3500137
TpMuguga_03g00201	CDS	U2AF65A	NW_876245.1	403336	404994	R	Splicing factor U2af large subunit A	complement(join(403336..403979,404049..404585,404715..404994))	Theileria parva strain Muguga	3500138
TpMuguga_03g00202	CDS	TpMuguga_03g00202	NW_876245.1	405177	411569	R	DNA polymerase (pol2) family protein	complement(join(405177..405623,405736..405815,405930..406080,406181..406249,406394..406904,407033..407154,407191..407274,407387..407646,407793..408185,408316..408404,408518..408588,408618..408824,408933..409136,409239..409439,409557..409772,409907..410400,410489..410600,410676..411067,411225..411324,411477..411569))	Theileria parva strain Muguga	3500139
TpMuguga_03g00203	CDS	FAS2	NW_876245.1	411714	414585	R	WD domain G-beta repeat protein	complement(join(411714..413201,413272..413359,413453..413659,413746..413848,413940..414585))	Theileria parva strain Muguga	3500140
TpMuguga_03g00204	CDS	TpMuguga_03g00204	NW_876245.1	414737	416443	D	putative integral membrane protein	join(414737..414961,415054..415190,415222..415426,415545..415826,415974..416144,416176..416214,416303..416443)	Theileria parva strain Muguga	3500141
TpMuguga_03g00205	CDS	cid11	NW_876245.1	416542	418482	R	Nucleotidyltransferase domain protein	complement(join(416542..416923,416965..417015,417085..417338,417418..417492,417526..417607,417727..417900,418027..418132,418191..418482))	Theileria parva strain Muguga	3500142
TpMuguga_03g00206	CDS	TpMuguga_03g00206	NW_876245.1	418973	421572	D	TCP-1/cpn60 chaperonin family protein	join(418973..419873,420017..420216,420312..420526,420637..420989,421088..421207,421322..421572)	Theileria parva strain Muguga	3500143
TpMuguga_03g00207	CDS	TpMuguga_03g00207	NW_876245.1	421697	423226	R	uncharacterized protein	complement(421697..423226)	Theileria parva strain Muguga	3500417
TpMuguga_03g00208	CDS	TpMuguga_03g00208	NW_876245.1	423526	424503	R	uncharacterized protein	complement(join(423526..423959,424035..424503))	Theileria parva strain Muguga	3500418
TpMuguga_03g00209	CDS	TpMuguga_03g00209	NW_876245.1	424642	425849	D	uncharacterized protein	join(424642..425090,425126..425492,425577..425849)	Theileria parva strain Muguga	3500419
TpMuguga_03g00210	CDS	TpMuguga_03g00210	NW_876245.1	425934	428528	R	T-complex protein 1 subunit eta	complement(join(425934..426151,426287..426775,426951..427064,427160..427289,427383..427719,427799..427940,428047..428226,428399..428528))	Theileria parva strain Muguga	3500420
TpMuguga_03g00211	CDS	TpMuguga_03g00211	NW_876245.1	428811	429243	D	uncharacterized protein	join(428811..428993,429106..429243)	Theileria parva strain Muguga	3500421
TpMuguga_03g00212	CDS	sf3b1	NW_876245.1	429679	433698	D	Splicing factor 3B subunit 1 family protein	join(429679..430012,430114..431142,431223..431483,431625..432356,432504..433031,433147..433451,433564..433698)	Theileria parva strain Muguga	3500422
TpMuguga_03g00213	CDS	TpMuguga_03g00213	NW_876245.1	434410	437772	D	uncharacterized protein	434410..437772	Theileria parva strain Muguga	3500144
TpMuguga_03g00214	CDS	TpMuguga_03g00214	NW_876245.1	437784	438760	R	uncharacterized protein	complement(join(437784..437969,438018..438202,438337..438760))	Theileria parva strain Muguga	3500145
TpMuguga_03g00215	CDS	Prpf19	NW_876245.1	439404	442035	D	uncharacterized protein	join(439404..439569,440403..440690,440783..441133,441243..441746,441854..442035)	Theileria parva strain Muguga	3500146
TpMuguga_03g00216	CDS	ddx52	NW_876245.1	442159	444234	D	DEAD/DEAH box helicase family protein	join(442159..442452,442595..442690,442728..442815,442845..442963,443002..443206,443330..443392,443441..443637,443769..444036,444083..444137,444171..444234)	Theileria parva strain Muguga	3500147
TpMuguga_03g00217	CDS	TpMuguga_03g00217	NW_876245.1	444440	444982	R	uncharacterized protein	complement(444440..444982)	Theileria parva strain Muguga	3500148
TpMuguga_03g00218	CDS	TpMuguga_03g00218	NW_876245.1	445815	446699	R	uncharacterized protein	complement(445815..446699)	Theileria parva strain Muguga	3500149
TpMuguga_03g00219	CDS	TpMuguga_03g00219	NW_876245.1	447270	448151	R	uncharacterized protein	complement(447270..448151)	Theileria parva strain Muguga	3500429
TpMuguga_03g00220	CDS	TpMuguga_03g00220	NW_876245.1	448518	450846	R	inosine-5'-monophosphate dehydrogenase	complement(join(448518..448946,449016..449144,449212..449319,449472..449607,449673..449999,450224..450385,450489..450627,450765..450846))	Theileria parva strain Muguga	3500430
TpMuguga_03g02560	CDS	Ppig	NW_876245.1	451036	452884	R	SYF2 splicing factor family protein	complement(join(451036..451345,451430..451545,451730..452884))	Theileria parva strain Muguga	3500431
TpMuguga_03g00223	CDS	TpMuguga_03g00223	NW_876245.1	453075	454178	D	Ribosomal protein L24e family protein	join(453075..453120,453244..453375,453588..453868,454077..454178)	Theileria parva strain Muguga	3500433
TpMuguga_03g00224	CDS	TpMuguga_03g00224	NW_876245.1	455219	456158	D	putative integral membrane protein	join(455219..455825,456007..456158)	Theileria parva strain Muguga	3500434
TpMuguga_03g00225	CDS	sconC	NW_876245.1	456264	457130	D	uncharacterized protein	join(456264..456372,456469..456611,456644..456709,456805..456945,457095..457130)	Theileria parva strain Muguga	3500157
TpMuguga_03g00226	CDS	Srsf3	NW_876245.1	457134	458139	R	Serine/arginine-rich splicing factor 3	complement(join(457134..457221,457368..457451,457657..457727,457764..457873,458094..458139))	Theileria parva strain Muguga	3500158
TpMuguga_03g00227	CDS	dld1	NW_876245.1	458740	460682	R	dihydrolipoyl dehydrogenase	complement(join(458740..459437,459537..459654,459793..460233,460304..460478,460615..460682))	Theileria parva strain Muguga	3500159
TpMuguga_03g00228	CDS	rpmA	NW_876245.1	460857	461446	D	Ribosomal L27 family protein	join(460857..460957,461040..461194,461262..461446)	Theileria parva strain Muguga	3500160
TpMuguga_03g00229	CDS	TpMuguga_03g00229	NW_876245.1	461668	462372	D	uncharacterized protein	461668..462372	Theileria parva strain Muguga	3500161
TpMuguga_03g00230	CDS	sdh1	NW_876245.1	462554	465096	R	FAD binding domain protein	complement(join(462554..462666,462857..463681,463710..464195,464311..464844,465033..465096))	Theileria parva strain Muguga	3500162
TpMuguga_03g00231	CDS	RCL1	NW_876245.1	465420	466887	D	RNA 3'-terminal phosphate cyclase family protein	join(465420..465584,465652..466887)	Theileria parva strain Muguga	3500175
TpMuguga_03g00232	CDS	TpMuguga_03g00232	NW_876245.1	467208	468698	D	uncharacterized protein	467208..468698	Theileria parva strain Muguga	3500176
TpMuguga_03g02420	CDS	SES1	NW_876245.1	469151	470746	R	serine--tRNA ligase	complement(469151..470746)	Theileria parva strain Muguga	86047777
TpMuguga_03g00233	CDS	G-TUB	NW_876245.1	470887	473606	R	tubulin/FtsZ family GTPase domain protein	complement(join(470887..471025,471059..471126,471179..471349,471459..471536,471593..471784,472533..472847,472988..473115,473205..473265,473322..473453,473508..473606))	Theileria parva strain Muguga	3500177
TpMuguga_03g00234	CDS	TpMuguga_03g00234	NW_876245.1	473945	474703	R	uncharacterized protein	complement(473945..474703)	Theileria parva strain Muguga	3500178
TpMuguga_03g00235	CDS	TpMuguga_03g00235	NW_876245.1	474883	478443	R	uncharacterized protein	complement(join(474883..475009,475082..475398,475609..477095,477190..478146,478233..478443))	Theileria parva strain Muguga	3500179
TpMuguga_03g00236	CDS	PRL	NW_876245.1	479425	482724	D	MCM2/3/5 family protein	join(479425..479586,479619..479678,479744..479875,479936..480024,480088..480268,480362..480450,480495..480595,480704..480896,480998..481109,481169..481370,481456..482219,482289..482449,482526..482724)	Theileria parva strain Muguga	3500180
TpMuguga_03g02300	CDS	TpMuguga_03g02300	NW_876245.1	482784	483230	R	uncharacterized protein	complement(482784..483230)	Theileria parva strain Muguga	86047769
TpMuguga_03g00237	CDS	TpMuguga_03g00237	NW_876245.1	483393	488765	R	Formin Homology 2 domain protein	complement(483393..488765)	Theileria parva strain Muguga	3500181
TpMuguga_03g02525	CDS	TpMuguga_03g02525	NW_876245.1	489245	490039	R	uncharacterized protein	complement(489245..490039)	Theileria parva strain Muguga	86047784
TpMuguga_03g00238	CDS	TpMuguga_03g00238	NW_876245.1	490141	491786	D	Polyprenyl synthetase family protein	join(490141..490217,490273..490721,490754..490950,491047..491188,491257..491378,491445..491786)	Theileria parva strain Muguga	3500182
TpMuguga_03g02240	CDS	TpMuguga_03g02240	NW_876245.1	491899	492380	R	uncharacterized protein	complement(join(491899..492134,492215..492380))	Theileria parva strain Muguga	86047764
TpMuguga_03g00239	CDS	TpMuguga_03g00239	NW_876245.1	492648	493917	D	uncharacterized protein	join(492648..492749,492780..492847,492922..493078,493111..493917)	Theileria parva strain Muguga	3500183
TpMuguga_03g02665	CDS	TpMuguga_03g02665	NW_876245.1	493974	495248	R	uncharacterized protein	complement(join(493974..494053,494108..495248))	Theileria parva strain Muguga	86047790
TpMuguga_03g02410	CDS	ZNHIT6	NW_876245.1	495461	496572	R	HIT zinc finger family protein	complement(join(495461..495586,495712..495827,495895..495965,496061..496228,496277..496572))	Theileria parva strain Muguga	3500184
TpMuguga_03g00241	CDS	TpMuguga_03g00241	NW_876245.1	496725	500654	R	Adenylate and Guanylate cyclase catalytic domain protein	complement(496725..500654)	Theileria parva strain Muguga	3500185
TpMuguga_03g00242	CDS	TpMuguga_03g00242	NW_876245.1	501770	506050	R	uncharacterized protein	complement(501770..506050)	Theileria parva strain Muguga	3500186
TpMuguga_03g00243	CDS	TpMuguga_03g00243	NW_876245.1	506169	511426	R	uncharacterized protein	complement(join(506169..506192,506231..511426))	Theileria parva strain Muguga	3500187
TpMuguga_03g00244	CDS	TpMuguga_03g00244	NW_876245.1	512550	516051	R	uncharacterized protein	complement(join(512550..515304,515340..515455,515487..515557,515601..516051))	Theileria parva strain Muguga	3500188
TpMuguga_03g00245	CDS	TpMuguga_03g00245	NW_876245.1	516141	518060	D	Mannosyltransferase (PIG-V) family protein	516141..518060	Theileria parva strain Muguga	3500189
TpMuguga_03g00246	CDS	TpMuguga_03g00246	NW_876245.1	518175	519107	R	uncharacterized protein	complement(518175..519107)	Theileria parva strain Muguga	3500190
TpMuguga_03g00247	CDS	TpMuguga_03g00247	NW_876245.1	519325	521109	R	uncharacterized protein	complement(519325..521109)	Theileria parva strain Muguga	3500191
TpMuguga_03g00248	CDS	TpMuguga_03g00248	NW_876245.1	521308	523015	R	uncharacterized protein	complement(join(521308..521347,521537..522836,522901..523015))	Theileria parva strain Muguga	3500192
TpMuguga_03g00249	CDS	Gorasp1	NW_876245.1	523311	524641	D	GRASP55/65 PDZ-like domain protein	join(523311..523347,523442..523480,523641..524641)	Theileria parva strain Muguga	3500193
TpMuguga_03g00250	CDS	TpMuguga_03g00250	NW_876245.1	524700	526522	R	uncharacterized protein	complement(join(524700..525047,525079..525360,525391..525515,525552..525605,525642..525719,525781..526127,526194..526327,526358..526522))	Theileria parva strain Muguga	3500194
TpMuguga_03g00251	CDS	TpMuguga_03g00251	NW_876245.1	526860	529046	D	DEAD/DEAH box helicase family protein	526860..529046	Theileria parva strain Muguga	3500206
TpMuguga_03g00252	CDS	TpMuguga_03g00252	NW_876245.1	529233	530331	R	Transcription factor TFIID family protein	complement(join(529233..530185,530259..530331))	Theileria parva strain Muguga	3500207
TpMuguga_03g00253	CDS	TpMuguga_03g00253	NW_876245.1	530551	531768	R	uncharacterized protein	complement(530551..531768)	Theileria parva strain Muguga	3500208
TpMuguga_03g00254	CDS	gpn3	NW_876245.1	532711	533783	D	Conserved hypothetical ATP binding family protein	join(532711..532909,532963..533783)	Theileria parva strain Muguga	3500209
TpMuguga_03g02370	CDS	TpMuguga_03g02370	NW_876245.1	533980	535337	R	uncharacterized protein	complement(join(533980..534006,534039..534128,534161..534206,534237..534324,534381..534531,534601..534822,534912..535003,535103..535337))	Theileria parva strain Muguga	3500210
TpMuguga_03g00257	CDS	TpMuguga_03g00257	NW_876245.1	535555	537048	R	uncharacterized protein	complement(join(535555..535893,536023..537048))	Theileria parva strain Muguga	3500212
TpMuguga_03g00258	CDS	TpMuguga_03g00258	NW_876245.1	537260	539315	R	Acetyl-coenzyme A transporter 1 family protein	complement(join(537260..537402,537553..537816,537883..537970,538050..539315))	Theileria parva strain Muguga	3500213
TpMuguga_03g02375	CDS	TpMuguga_03g02375	NW_876245.1	539876	542487	D	PP-loop family protein	join(539876..540972,541029..541125,541228..542487)	Theileria parva strain Muguga	3500215
TpMuguga_03g00261	CDS	ATG3	NW_876245.1	543212	544249	R	autophagocytosis-associated active-site domain protein	complement(join(543212..543296,543444..543607,543691..543798,543829..543897,543927..544023,544101..544249))	Theileria parva strain Muguga	3500218
TpMuguga_03g00262	CDS	RABGAP1L	NW_876245.1	544718	545757	D	Rab-GTPase-TBC domain protein	join(544718..544789,544823..544938,544982..545125,545156..545216,545247..545307,545458..545586,545663..545757)	Theileria parva strain Muguga	3500219
TpMuguga_03g00263	CDS	TpMuguga_03g00263	NW_876245.1	546545	548911	D	Tp33; uncharacterized protein	546545..548911	Theileria parva strain Muguga	3500220
TpMuguga_03g00264	CDS	TpMuguga_03g00264	NW_876245.1	549115	550722	R	S1/P1 Nuclease family protein	complement(join(549115..549240,549357..549892,550058..550480,550632..550722))	Theileria parva strain Muguga	3500221
TpMuguga_03g00265	CDS	TpMuguga_03g00265	NW_876245.1	550891	552054	R	uncharacterized protein	complement(join(550891..551091,551169..551345,551434..551529,551645..551748,551815..551920,551992..552054))	Theileria parva strain Muguga	3500222
TpMuguga_03g00266	CDS	TpMuguga_03g00266	NW_876245.1	552948	554627	D	Cyclin-dependent kinase regulatory subunit family protein	552948..554627	Theileria parva strain Muguga	3500223
TpMuguga_03g00267	CDS	prpf38a	NW_876245.1	554709	555453	R	PRP38 family protein	complement(join(554709..554878,554931..555022,555134..555453))	Theileria parva strain Muguga	3500224
TpMuguga_03g00268	CDS	TpMuguga_03g00268	NW_876245.1	555624	559088	R	Sexual stage antigen s48/45 domain protein	complement(555624..559088)	Theileria parva strain Muguga	3500225
TpMuguga_03g00269	CDS	rplB	NW_876245.1	559249	560668	R	ribosomal protein L2	complement(join(559249..559412,559442..559506,559632..559769,559805..559893,559979..560362,560433..560539,560635..560668))	Theileria parva strain Muguga	3500226
TpMuguga_03g00270	CDS	TpMuguga_03g00270	NW_876245.1	560792	562721	D	uncharacterized protein	join(560792..560878,560919..561283,561316..562243,562277..562556,562690..562721)	Theileria parva strain Muguga	3500227
TpMuguga_03g02310	CDS	cyaY	NW_876245.1	562718	563173	D	Frataxin-like domain protein	join(562718..562792,562825..562972,563003..563053,563103..563173)	Theileria parva strain Muguga	86047771
TpMuguga_03g00271	CDS	TpMuguga_03g00271	NW_876245.1	563214	564141	R	uncharacterized protein	complement(join(563214..563299,563361..564141))	Theileria parva strain Muguga	3500228
TpMuguga_03g00272	CDS	TpMuguga_03g00272	NW_876245.1	564229	564966	D	uncharacterized protein	join(564229..564769,564833..564966)	Theileria parva strain Muguga	3500229
TpMuguga_03g02400	CDS	TpMuguga_03g02400	NW_876245.1	565048	566799	R	uncharacterized protein	complement(join(565048..565326,565360..565389,565426..565599,565632..565727,565784..565885,565916..566064,566159..566314,566349..566799))	Theileria parva strain Muguga	3500230
TpMuguga_03g00275	CDS	WRAP53	NW_876245.1	567088	568596	D	WD domain G-beta repeat protein	join(567088..567259,567294..567463,567495..567674,567795..567998,568091..568259,568321..568456,568494..568596)	Theileria parva strain Muguga	3500243
TpMuguga_03g00276	CDS	TpMuguga_03g00276	NW_876245.1	568697	569999	R	MIF4G domain protein	complement(join(568697..569064,569136..569454,569500..569738,569774..569826,569899..569999))	Theileria parva strain Muguga	3500244
TpMuguga_03g02425	CDS	TpMuguga_03g02425	NW_876245.1	570356	570962	R	uncharacterized protein	complement(join(570356..570517,570555..570711,570741..570822,570884..570962))	Theileria parva strain Muguga	86047778
TpMuguga_03g00277	CDS	TpMuguga_03g00277	NW_876245.1	571479	572185	R	uncharacterized protein	complement(join(571479..571540,571573..571845,571880..571960,571999..572185))	Theileria parva strain Muguga	3500245
TpMuguga_03g00278	CDS	TpMuguga_03g00278	NW_876245.1	572356	572665	R	mitochondrial ATP synthase F1 subunit epsilon	complement(join(572356..572378,572427..572521,572601..572665))	Theileria parva strain Muguga	3500246
TpMuguga_03g00279	CDS	typA	NW_876245.1	572812	574783	D	Elongation factor Tu GTP binding domain protein	join(572812..573228,573260..573778,573810..574251,574281..574783)	Theileria parva strain Muguga	3500247
TpMuguga_03g00280	CDS	TpMuguga_03g00280	NW_876245.1	575429	576875	D	Papain family cysteine protease family protein	join(575429..575918,576025..576875)	Theileria parva strain Muguga	3500248
TpMuguga_03g00281	CDS	TACP	NW_876245.1	577795	579288	D	Papain family cysteine protease family protein	577795..579288	Theileria parva strain Muguga	3500249
TpMuguga_03g00282	CDS	TACP	NW_876245.1	579500	580926	D	Papain family cysteine protease family protein	join(579500..579980,580022..580926)	Theileria parva strain Muguga	3500250
TpMuguga_03g00283	CDS	TACP	NW_876245.1	581644	582969	D	Papain family cysteine protease family protein	581644..582969	Theileria parva strain Muguga	3500251
TpMuguga_03g00284	CDS	TpMuguga_03g00284	NW_876245.1	583353	584716	D	Papain family cysteine protease family protein	join(583353..583830,583863..584716)	Theileria parva strain Muguga	3500252
TpMuguga_03g00285	CDS	TpMuguga_03g00285	NW_876245.1	585100	586451	D	Papain family cysteine protease family protein	join(585100..585577,585610..586451)	Theileria parva strain Muguga	3500253
TpMuguga_03g00286	CDS	TpMuguga_03g00286	NW_876245.1	586744	587195	D	uncharacterized protein	join(586744..586905,586939..587020,587051..587100,587151..587195)	Theileria parva strain Muguga	3500254
TpMuguga_03g00287	CDS	TpMuguga_03g00287	NW_876245.1	588213	590371	D	uncharacterized protein	join(588213..589158,589188..590371)	Theileria parva strain Muguga	3500255
TpMuguga_03g00288	CDS	der	NW_876245.1	590465	592567	D	GTPase domain protein	590465..592567	Theileria parva strain Muguga	3500256
TpMuguga_03g00289	CDS	TpMuguga_03g00289	NW_876245.1	592694	593738	R	ATPase family associated with various cellular activities (AAA) family protein	complement(join(592694..593451,593483..593738))	Theileria parva strain Muguga	3500257
TpMuguga_03g00290	CDS	TpMuguga_03g00290	NW_876245.1	593995	596043	R	uncharacterized protein	complement(join(593995..594285,594319..594723,594903..595294,595326..595611,595645..596043))	Theileria parva strain Muguga	3500258
TpMuguga_03g00291	CDS	TpMuguga_03g00291	NW_876245.1	596082	597490	R	EamA-like transporter family protein	complement(join(596082..596261,596350..596429,596500..596662,596727..596785,596836..597237,597268..597490))	Theileria parva strain Muguga	3500259
TpMuguga_03g00292	CDS	PRPF8	NW_876245.1	598212	607253	R	PROCN (NUC071) domain protein	complement(join(598212..598747,598922..600352,600576..601426,601715..604892,604980..606881,606941..607253))	Theileria parva strain Muguga	3500260
TpMuguga_03g00293	CDS	PAG1	NW_876245.1	607516	608582	R	Proteasome subunit family protein	complement(join(607516..607820,608084..608582))	Theileria parva strain Muguga	3500261
TpMuguga_03g00294	CDS	U2AF35B	NW_876245.1	608788	610033	R	Splicing factor U2af small subunit A	complement(join(608788..608884,609046..609247,609515..609724,609835..610033))	Theileria parva strain Muguga	3500262
TpMuguga_03g00295	CDS	TpMuguga_03g00295	NW_876245.1	610251	611592	D	uncharacterized protein	join(610251..610394,610525..611592)	Theileria parva strain Muguga	3500263
TpMuguga_03g00296	CDS	MEKK1	NW_876245.1	611951	614479	D	Protein kinase domain protein	611951..614479	Theileria parva strain Muguga	3500264
TpMuguga_03g00297	CDS	TpMuguga_03g00297	NW_876245.1	614682	616568	R	uncharacterized protein	complement(614682..616568)	Theileria parva strain Muguga	3500265
TpMuguga_03g00298	CDS	TpMuguga_03g00298	NW_876245.1	617124	617912	R	uncharacterized protein	complement(617124..617912)	Theileria parva strain Muguga	3500266
TpMuguga_03g00299	CDS	TpMuguga_03g00299	NW_876245.1	618337	621119	R	uncharacterized protein	complement(join(618337..619814,619901..620032,620062..620511,620687..620740,621047..621119))	Theileria parva strain Muguga	3500267
TpMuguga_03g00300	CDS	TpMuguga_03g00300	NW_876245.1	622200	622805	R	SEP domain protein	complement(622200..622805)	Theileria parva strain Muguga	3500268
TpMuguga_03g00301	CDS	TpMuguga_03g00301	NW_876245.1	623170	623885	R	Ribosomal protein S6 family protein	complement(join(623170..623715,623799..623885))	Theileria parva strain Muguga	3500269
TpMuguga_03g02350	CDS	prfA	NW_876245.1	624239	627981	D	RF-1 domain protein	join(624239..624634,625071..625200,625543..625814,625939..626013,627736..627981)	Theileria parva strain Muguga	3500270
TpMuguga_03g00304	CDS	TpMuguga_03g00304	NW_876245.1	628108	629808	D	Arv1-like family protein	join(628108..628345,628433..628705,628738..628884,629042..629808)	Theileria parva strain Muguga	3500272
TpMuguga_03g00305	CDS	TpMuguga_03g00305	NW_876245.1	629902	633104	D	uncharacterized protein	join(629902..630093,630139..630212,630338..630687,631258..633104)	Theileria parva strain Muguga	3500273
TpMuguga_03g02555	CDS	CYM	NW_876245.1	634311	637566	R	Eukaryotic aspartyl protease family protein	complement(join(634311..634391,634551..634733,634762..634803,635049..635411,635669..635785,636085..636205,636487..636560,636765..637055,637426..637566))	Theileria parva strain Muguga	3500274
TpMuguga_03g00308	CDS	TpMuguga_03g00308	NW_876245.1	638271	639492	D	Elongation factor P domain protein	join(638271..638328,638423..639492)	Theileria parva strain Muguga	3500276
TpMuguga_03g00309	CDS	TpMuguga_03g00309	NW_876245.1	640240	641605	R	putative methyltransferase family protein	complement(join(640240..640353,640490..640601,640716..640822,640852..640915,641236..641286,641315..641409,641438..641605))	Theileria parva strain Muguga	3500277
TpMuguga_03g00310	CDS	TpMuguga_03g00310	NW_876245.1	641817	643009	R	uncharacterized protein	complement(join(641817..642369,642702..643009))	Theileria parva strain Muguga	3500278
TpMuguga_03g00311	CDS	Smc3	NW_876245.1	643322	648897	D	SMC proteins Flexible Hinge domain protein	join(643322..643409,644020..645393,645785..646269,646366..646436,646582..646663,646693..646796,646842..646931,647125..647350,647381..647410,647451..647566,647896..648019,648290..648350,648381..648454,648662..648769,648799..648897)	Theileria parva strain Muguga	3500279
TpMuguga_03g02190	CDS	SMC3	NW_876245.1	649091	649901	D	RecF/RecN/SMC N terminal domain protein	join(649091..649275,649721..649829,649878..649901)	Theileria parva strain Muguga	3500281
TpMuguga_03g00314	CDS	TpMuguga_03g00314	NW_876245.1	650046	651624	D	uncharacterized protein	join(650046..650205,650256..650374,650983..651624)	Theileria parva strain Muguga	3500282
TpMuguga_03g00315	CDS	CK1	NW_876245.1	652963	653976	D	Casein kinase I	652963..653976	Theileria parva strain Muguga	3500283
TpMuguga_03g02265	CDS	TpMuguga_03g02265	NW_876245.1	654830	656090	R	RNA recognition family protein	complement(join(654830..655161,655374..655915,655945..656090))	Theileria parva strain Muguga	86047767
TpMuguga_03g02270	CDS	TpMuguga_03g02270	NW_876245.1	656358	657683	R	uncharacterized protein	complement(656358..657683)	Theileria parva strain Muguga	3500284
TpMuguga_03g02260	CDS	citZ	NW_876245.1	658521	660051	R	Citrate synthase family protein	complement(join(658521..658612,658642..658840,658904..659145,659358..659424,659455..659622,659710..659897,659931..660051))	Theileria parva strain Muguga	3500285
TpMuguga_03g00318	CDS	tas	NW_876245.1	660265	664922	D	Aldo/keto reductase family protein	join(660265..660805,661045..661196,661326..661531,661906..662288,662473..662575,662627..662697,663161..663248,663322..663427,663544..663949,664203..664345,664428..664504,664535..664577,664680..664922)	Theileria parva strain Muguga	3500286
TpMuguga_03g00319	CDS	TpMuguga_03g00319	NW_876245.1	665307	665852	R	uncharacterized protein	complement(665307..665852)	Theileria parva strain Muguga	3500287
TpMuguga_03g00320	CDS	TpMuguga_03g00320	NW_876245.1	666754	667853	R	Biotin-requiring enzyme family protein	complement(join(666754..667079,667298..667358,667437..667853))	Theileria parva strain Muguga	3500288
TpMuguga_03g02245	CDS	TpMuguga_03g02245	NW_876245.1	667912	668756	R	Fe-S protein assembly co-chaperone HscB	complement(join(667912..667983,668018..668134,668164..668220,668249..668459,668560..668624,668658..668756))	Theileria parva strain Muguga	3500289
TpMuguga_03g02505	CDS	TpMuguga_03g02505	NW_876245.1	668797	673220	R	CS domain protein	complement(join(668797..669063,669094..669229,669374..669537,669638..669737,669914..669996,670229..670457,670817..670896,670957..671087,671126..671220,671366..671764,671794..672524,672714..672886,673022..673220))	Theileria parva strain Muguga	3500290
TpMuguga_03g02290	CDS	TpMuguga_03g02290	NW_876245.1	673443	675050	D	uncharacterized protein	join(673443..673557,673895..673990,674019..674058,674087..674127,674253..674329,674359..674439,674472..674563,674592..674659,674689..674771,674886..675050)	Theileria parva strain Muguga	3500300
TpMuguga_03g00327	CDS	TpMuguga_03g00327	NW_876245.1	675155	678929	D	uncharacterized protein	join(675155..676924,676954..677054,677085..677171,677245..678078,678301..678482,678526..678929)	Theileria parva strain Muguga	3500302
TpMuguga_03g00328	CDS	TpMuguga_03g00328	NW_876245.1	679220	679882	D	Ribosomal protein L7/L12 domain protein	679220..679882	Theileria parva strain Muguga	3500303
TpMuguga_03g00329	CDS	TpMuguga_03g00329	NW_876245.1	680274	681385	D	uncharacterized protein	join(680274..681144,681303..681385)	Theileria parva strain Muguga	3500304
TpMuguga_03g00330	CDS	TpMuguga_03g00330	NW_876245.1	681801	683648	D	uncharacterized protein	join(681801..681920,682320..683648)	Theileria parva strain Muguga	3500312
TpMuguga_03g00331	CDS	TpMuguga_03g00331	NW_876245.1	683862	686493	D	putative integral membrane protein	join(683862..685025,685237..686493)	Theileria parva strain Muguga	3500313
TpMuguga_03g00332	CDS	BOB1	NW_876245.1	686618	687497	R	Protein BOBBER 1	complement(join(686618..686877,686906..687497))	Theileria parva strain Muguga	3500314
TpMuguga_03g00333	CDS	UBC1	NW_876245.1	687513	688170	R	Ubiquitin-conjugating enzyme E2 1	complement(join(687513..687659,687689..687777,687808..687897,687929..688064,688156..688170))	Theileria parva strain Muguga	3500315
TpMuguga_03g00334	CDS	PPIL4	NW_876245.1	688271	689094	D	Peptidyl-prolyl cis-trans isomerase-like 4	join(688271..688494,688524..688667,688698..689094)	Theileria parva strain Muguga	3500316
TpMuguga_03g02680	CDS	TpMuguga_03g02680	NW_876245.1	689109	692910	R	putative integral membrane protein	complement(join(689109..689657,689746..689793,689826..689882,689935..692910))	Theileria parva strain Muguga	3500317
TpMuguga_03g00337	CDS	TpMuguga_03g00337	NW_876245.1	693951	695831	D	Major Facilitator Superfamily protein	693951..695831	Theileria parva strain Muguga	3500325
TpMuguga_03g00338	CDS	TpMuguga_03g00338	NW_876245.1	696224	697873	D	Major Facilitator Superfamily protein	696224..697873	Theileria parva strain Muguga	3500326
TpMuguga_03g00339	CDS	TpMuguga_03g00339	NW_876245.1	698257	699927	D	Major Facilitator Superfamily protein	698257..699927	Theileria parva strain Muguga	3500327
TpMuguga_03g00340	CDS	TpMuguga_03g00340	NW_876245.1	700324	701937	D	Major Facilitator Superfamily protein	700324..701937	Theileria parva strain Muguga	3500328
TpMuguga_03g00341	CDS	TpMuguga_03g00341	NW_876245.1	702322	703935	D	Major Facilitator Superfamily protein	702322..703935	Theileria parva strain Muguga	3500329
TpMuguga_03g00894	CDS	TpMuguga_03g00894	NW_876245.1	704319	705977	D	Major Facilitator Superfamily protein	704319..705977	Theileria parva strain Muguga	3500330
TpMuguga_03g00342	CDS	TpMuguga_03g00342	NW_876245.1	706361	708022	D	Major Facilitator Superfamily protein	706361..708022	Theileria parva strain Muguga	3500331
TpMuguga_03g00343	CDS	Maea	NW_876245.1	708479	709822	D	CTLH/CRA C-terminal to LisH motif domain protein	708479..709822	Theileria parva strain Muguga	3500332
TpMuguga_03g00344	CDS	ERD2	NW_876245.1	710042	711071	D	ER lumen protein-retaining receptor	join(710042..710430,710501..710789,710820..711071)	Theileria parva strain Muguga	3500344
TpMuguga_03g02620	CDS	TpMuguga_03g02620	NW_876245.1	711275	712705	D	GPI transamidase subunit PIG-U family protein	join(711275..711550,711581..711643,711674..712051,712081..712161,712192..712233,712262..712453,712485..712605,712635..712705)	Theileria parva strain Muguga	3500345
TpMuguga_03g02255	CDS	TpMuguga_03g02255	NW_876245.1	712804	713492	D	Pre-rRNA-processing protein TSR2 family protein	join(712804..712859,712892..712992,713081..713169,713199..713319,713349..713414,713446..713492)	Theileria parva strain Muguga	86047766
TpMuguga_03g00346	CDS	TpMuguga_03g00346	NW_876245.1	713821	715760	D	Glucose-6-phosphate isomerase cytosolic B	join(713821..713956,713989..714470,714505..714607,714641..714732,714787..715148,715182..715269,715302..715533,715564..715760)	Theileria parva strain Muguga	3500346
TpMuguga_03g00347	CDS	TpMuguga_03g00347	NW_876245.1	715833	717416	R	putative serine esterase (DUF676) family protein	complement(715833..717416)	Theileria parva strain Muguga	3500347
TpMuguga_03g00348	CDS	TpMuguga_03g00348	NW_876245.1	718353	719771	D	BT1 family protein	join(718353..718832,718864..719093,719123..719771)	Theileria parva strain Muguga	3500348
TpMuguga_03g00895	CDS	TpMuguga_03g00895	NW_876245.1	720098	721514	D	BT1 family protein	join(720098..720574,720605..720834,720866..721514)	Theileria parva strain Muguga	3500349
TpMuguga_03g00349	CDS	TpMuguga_03g00349	NW_876245.1	721825	723649	D	putative integral membrane protein	join(721825..721866,721908..721982,722012..722116,722148..722212,722243..722297,722338..723209,723243..723326,723357..723485,723520..723649)	Theileria parva strain Muguga	3500350
TpMuguga_03g00350	CDS	cyn-10	NW_876245.1	723683	724351	R	Peptidyl-prolyl cis-trans isomerase-like 3	complement(join(723683..723815,723877..723998,724045..724153,724187..724239,724274..724351))	Theileria parva strain Muguga	3500351
TpMuguga_03g02600	CDS	TpMuguga_03g02600	NW_876245.1	724506	724898	D	PHAX RNA-binding domain protein	join(724506..724709,724752..724898)	Theileria parva strain Muguga	86047788
TpMuguga_03g00351	CDS	VPS4A	NW_876245.1	724961	726499	D	ATPase family associated with various cellular activities (AAA) family protein	join(724961..725090,725126..725284,725315..725383,725465..725536,725570..725680,725710..725904,725942..726020,726052..726183,726241..726367,726398..726499)	Theileria parva strain Muguga	3500352
TpMuguga_03g00352	CDS	TpMuguga_03g00352	NW_876245.1	726697	730212	R	uncharacterized protein	complement(726697..730212)	Theileria parva strain Muguga	3500353
TpMuguga_03g02360	CDS	TpMuguga_03g02360	NW_876245.1	730904	733031	D	uncharacterized protein	join(730904..731026,731099..731149,731180..731255,731302..731433,731463..731563,731596..731930,731961..732039,732070..732152,732185..732335,732368..732511,732569..732718,732763..732924,732954..733031)	Theileria parva strain Muguga	3500363
TpMuguga_03g02470	CDS	TpMuguga_03g02470	NW_876245.1	733240	733912	D	putative integral membrane protein	join(733240..733256,733289..733445,733478..733703,733734..733858,733886..733912)	Theileria parva strain Muguga	86047783
TpMuguga_03g00357	CDS	CTSC	NW_876245.1	734008	735814	R	Papain family cysteine protease family protein	complement(join(734008..734204,734234..735139,735170..735274,735379..735528,735558..735679,735711..735814))	Theileria parva strain Muguga	3500364
TpMuguga_03g00358	CDS	TpMuguga_03g00358	NW_876245.1	736309	737057	R	uncharacterized protein	complement(join(736309..736342,736372..736643,736674..736760,736790..736874,736903..737057))	Theileria parva strain Muguga	3500365
TpMuguga_03g02235	CDS	TpMuguga_03g02235	NW_876245.1	737575	737947	R	uncharacterized protein	complement(join(737575..737639,737677..737803,737834..737947))	Theileria parva strain Muguga	86047763
TpMuguga_03g02205	CDS	TpMuguga_03g02205	NW_876245.1	738077	739443	R	Mitochondrial carrier family protein	complement(join(738077..738226,738284..738366,738477..738578,738619..738870,738903..739443))	Theileria parva strain Muguga	3500366
TpMuguga_03g00360	CDS	TpMuguga_03g00360	NW_876245.1	739949	744010	D	uncharacterized protein	739949..744010	Theileria parva strain Muguga	3500367
TpMuguga_03g00361	CDS	ABHD17B	NW_876245.1	744147	745425	R	Alpha/beta hydrolase family protein	complement(join(744147..744754,744785..744871,745019..745140,745295..745425))	Theileria parva strain Muguga	3500368
TpMuguga_03g00362	CDS	TpMuguga_03g00362	NW_876245.1	745727	746922	D	uncharacterized protein	join(745727..745834,745865..746006,746091..746156,746251..746319,746350..746424,746454..746507,746540..746617,746648..746724,746755..746809,746840..746922)	Theileria parva strain Muguga	3500369
TpMuguga_03g00363	CDS	TpMuguga_03g00363	NW_876245.1	747081	747650	R	uncharacterized protein	complement(747081..747650)	Theileria parva strain Muguga	3500370
TpMuguga_03g00364	CDS	TpMuguga_03g00364	NW_876245.1	748173	748755	R	uncharacterized protein	complement(join(748173..748244,748273..748461,748558..748755))	Theileria parva strain Muguga	3500371
TpMuguga_03g00365	CDS	ISPF	NW_876245.1	749060	749692	D	YgbB family protein	749060..749692	Theileria parva strain Muguga	3500372
TpMuguga_03g00366	CDS	TpMuguga_03g00366	NW_876245.1	749780	751066	R	ATP-NAD kinase family protein	complement(join(749780..750127,750206..750351,750436..751066))	Theileria parva strain Muguga	3500373
TpMuguga_03g00367	CDS	TpMuguga_03g00367	NW_876245.1	751640	756799	D	Uncharacterized protein PFB0460c; uncharacterized protein	751640..756799	Theileria parva strain Muguga	3500374
TpMuguga_03g00368	CDS	TpMuguga_03g00368	NW_876245.1	757081	757953	R	uncharacterized protein	complement(757081..757953)	Theileria parva strain Muguga	3500375
TpMuguga_03g00369	CDS	TpMuguga_03g00369	NW_876245.1	758355	761572	R	Sodium:neurotransmitter symporter family protein	complement(join(758355..758474,758568..760684,760774..761572))	Theileria parva strain Muguga	3500376
TpMuguga_03g00370	CDS	emo-1	NW_876245.1	762190	762438	D	protein translocation complex, sec61 subunit gamma	762190..762438	Theileria parva strain Muguga	3500377
TpMuguga_03g00371	CDS	rpl37A	NW_876245.1	762804	763320	D	60S ribosomal protein L37a-2	join(762804..762824,762927..763037,763168..763320)	Theileria parva strain Muguga	3500378
TpMuguga_03g00372	CDS	TpMuguga_03g00372	NW_876245.1	763402	764089	R	PITH domain protein	complement(join(763402..763641,763748..764089))	Theileria parva strain Muguga	3500379
TpMuguga_03g00373	CDS	uap56	NW_876245.1	764995	766586	D	DEAD-box ATP-dependent RNA helicase 15	join(764995..766027,766264..766586)	Theileria parva strain Muguga	3500380
TpMuguga_03g00374	CDS	TpMuguga_03g00374	NW_876245.1	766786	768870	R	Major Facilitator Superfamily protein	complement(join(766786..766950,767055..767133,767166..767301,767400..767594,767692..767782,767851..767939,768001..768177,768274..768567,768744..768870))	Theileria parva strain Muguga	3500423
TpMuguga_03g00375	CDS	cta4	NW_876245.1	769403	774251	D	HAD ATPase P-type family IC family protein	join(769403..773190,773326..773513,773659..774251)	Theileria parva strain Muguga	3500424
TpMuguga_03g00376	CDS	Brf1	NW_876245.1	774441	776021	R	Transcription factor TFIIB repeat family protein	complement(774441..776021)	Theileria parva strain Muguga	3500425
TpMuguga_03g00377	CDS	TpMuguga_03g00377	NW_876245.1	776111	780659	R	uncharacterized protein	complement(join(776111..776169,776204..776267,776305..776614,776785..780659))	Theileria parva strain Muguga	3500426
TpMuguga_03g00378	CDS	TpMuguga_03g00378	NW_876245.1	781175	781540	D	putative integral membrane protein	781175..781540	Theileria parva strain Muguga	3500427
TpMuguga_03g00379	CDS	TpMuguga_03g00379	NW_876245.1	781708	784407	R	putative integral membrane protein	complement(781708..784407)	Theileria parva strain Muguga	3500428
TpMuguga_03g02330	CDS	TpMuguga_03g02330	NW_876245.1	784675	789552	D	uncharacterized protein	join(784675..784704,784850..784963,785005..785070,785103..785182,785213..785360,785410..785531,785562..785640,785672..785998,786031..786133,786167..786513,786547..787017,787051..787401,787434..787516,787558..787691,787722..787783,787817..787869,787902..788076,788109..788152,788238..789345,789376..789552)	Theileria parva strain Muguga	3500355
TpMuguga_03g00383	CDS	TpMuguga_03g00383	NW_876245.1	789634	790637	R	putative integral membrane protein	complement(join(789634..789721,789752..789903,789963..790433,790483..790568,790604..790637))	Theileria parva strain Muguga	3500357
TpMuguga_03g00382	CDS	mus81	NW_876245.1	791116	794099	D	ERCC4 domain protein	join(791116..791250,791338..791438,791491..793506,793647..793983,794013..794099)	Theileria parva strain Muguga	3500358
TpMuguga_03g00384	CDS	TpMuguga_03g00384	NW_876245.1	794148	794984	R	uncharacterized protein	complement(join(794148..794200,794234..794984))	Theileria parva strain Muguga	3500359
TpMuguga_03g00385	CDS	rrp6	NW_876245.1	795264	798627	R	3'-5' exonuclease family protein	complement(join(795264..795797,795831..795857,795893..795997,796091..796183,796278..796638,796796..798627))	Theileria parva strain Muguga	3500360
TpMuguga_03g00386	CDS	SNRPE	NW_876245.1	798947	799428	R	Small nuclear ribonucleoprotein E	complement(join(798947..799084,799202..799291,799381..799428))	Theileria parva strain Muguga	3500339
TpMuguga_03g00387	CDS	Kars	NW_876245.1	799545	801848	R	lysine--tRNA ligase	complement(join(799545..799598,799629..799772,799849..799975,800046..800131,800162..800298,800389..800505,800552..800653,800685..800920,800976..801147,801177..801444,801503..801631,801765..801848))	Theileria parva strain Muguga	3500340
TpMuguga_03g00388	CDS	TpMuguga_03g00388	NW_876245.1	801909	802782	D	uncharacterized protein	join(801909..802263,802326..802396,802442..802528,802600..802670,802701..802782)	Theileria parva strain Muguga	3500341
TpMuguga_03g00389	CDS	TpMuguga_03g00389	NW_876245.1	802940	803905	D	uncharacterized protein	802940..803905	Theileria parva strain Muguga	3500342
TpMuguga_03g00390	CDS	TpMuguga_03g00390	NW_876245.1	803968	804669	R	uncharacterized protein	complement(join(803968..804271,804302..804669))	Theileria parva strain Muguga	3500343
TpMuguga_03g00391	CDS	TpMuguga_03g00391	NW_876245.1	804953	806086	D	RNA polymerase II-binding domain family protein	804953..806086	Theileria parva strain Muguga	3500333
TpMuguga_03g00392	CDS	TpMuguga_03g00392	NW_876245.1	806558	808115	D	uncharacterized protein	join(806558..806902,806992..807687,807780..808115)	Theileria parva strain Muguga	3500334
TpMuguga_03g00393	CDS	TpMuguga_03g00393	NW_876245.1	808250	812784	R	uncharacterized protein	complement(join(808250..808926,809044..811155,811263..812784))	Theileria parva strain Muguga	3500335
TpMuguga_03g00394	CDS	DHX38	NW_876245.1	813057	816658	D	Helicase associated domain (HA2) family protein	join(813057..814031,814136..814808,814883..815020,815125..815505,815649..816347,816501..816658)	Theileria parva strain Muguga	3500336
TpMuguga_03g00395	CDS	UVH1	NW_876245.1	816760	821307	R	ERCC4 domain protein	complement(join(816760..816876,816909..817628,817662..817752,817821..817942,818045..819449,819620..821307))	Theileria parva strain Muguga	3500337
TpMuguga_03g00396	CDS	TpMuguga_03g00396	NW_876245.1	821537	822170	D	uncharacterized protein	join(821537..821639,821695..821779,821857..822037,822132..822170)	Theileria parva strain Muguga	3500338
TpMuguga_03g00397	CDS	TpMuguga_03g00397	NW_876245.1	822857	825390	D	Gaa1-like GPI transamidase domain protein	join(822857..822924,822996..825390)	Theileria parva strain Muguga	3500305
TpMuguga_03g00398	CDS	rpf1	NW_876245.1	825510	826964	D	Ribosome production factor 1	join(825510..825530,825622..825968,826136..826208,826242..826365,826395..826555,826591..826664,826769..826847,826878..826964)	Theileria parva strain Muguga	3500306
TpMuguga_03g00399	CDS	TpMuguga_03g00399	NW_876245.1	827115	829256	D	uncharacterized protein	827115..829256	Theileria parva strain Muguga	3500307
TpMuguga_03g00400	CDS	TpMuguga_03g00400	NW_876245.1	829538	830086	R	uncharacterized protein	complement(829538..830086)	Theileria parva strain Muguga	3500308
TpMuguga_03g00401	CDS	TpMuguga_03g00401	NW_876245.1	830541	831238	R	uncharacterized protein	complement(join(830541..830553,830610..831238))	Theileria parva strain Muguga	3500309
TpMuguga_03g02640	CDS	TpMuguga_03g02640	NW_876245.1	831534	836859	R	PPR repeat family protein	complement(join(831534..833332,833457..836859))	Theileria parva strain Muguga	3500310
TpMuguga_03g00404	CDS	TpMuguga_03g00404	NW_876245.1	837795	839508	D	uncharacterized protein	join(837795..837798,837829..837876,837938..837979,838014..838163,839028..839111,839190..839273,839345..839508)	Theileria parva strain Muguga	3500319
TpMuguga_03g02405	CDS	TpMuguga_03g02405	NW_876245.1	840033	843622	D	putative integral membrane protein	join(840033..842036,842099..843021,843088..843487,843563..843622)	Theileria parva strain Muguga	86047776
TpMuguga_03g02695	CDS	TpMuguga_03g02695	NW_876245.1	843958	846023	D	BT1 family protein	join(843958,844059..844304,844446..844672,844753..844914,845031..845204,845290..845878,845971..846023)	Theileria parva strain Muguga	3500321
TpMuguga_03g00407	CDS	PHB4	NW_876245.1	846214	847035	D	prohibitin-4	846214..847035	Theileria parva strain Muguga	3500322
TpMuguga_03g00408	CDS	TpMuguga_03g00408	NW_876245.1	847185	848494	R	60Kd inner membrane family protein	complement(join(847185..847408,847492..848494))	Theileria parva strain Muguga	3500323
TpMuguga_03g02690	CDS	lvsA	NW_876245.1	848680	852773	D	Beige/BEACH domain protein	join(848680..849184,849234..849804,849898..850517,850661..850914,851061..851248,851392..851983,852065..852167,852205..852773)	Theileria parva strain Muguga	3500324
TpMuguga_03g00411	CDS	AERO1	NW_876245.1	852837	854662	R	Endoplasmic Reticulum Oxidoreductin 1 (ERO1) family protein	complement(join(852837..853073,853227..853347,853434..853859,853974..854662))	Theileria parva strain Muguga	3500293
TpMuguga_03g00412	CDS	tim22	NW_876245.1	855141	855935	D	Tim17/Tim22/Tim23/Pmp24 family protein	join(855141..855318,855453..855637,855733..855805,855835..855935)	Theileria parva strain Muguga	3500294
TpMuguga_03g00413	CDS	TpMuguga_03g00413	NW_876245.1	855932	857238	R	Methyltransferase domain protein	complement(join(855932..856109,856161..856232,856310..856532,856612..856780,856853..856923,857033..857135,857188..857238))	Theileria parva strain Muguga	3500295
TpMuguga_03g00414	CDS	TpMuguga_03g00414	NW_876245.1	857314	858855	R	Ubiquitin family protein	complement(857314..858855)	Theileria parva strain Muguga	3500296
TpMuguga_03g00415	CDS	TpMuguga_03g00415	NW_876245.1	859083	860074	D	uncharacterized protein	join(859083..859113,859229..859400,859520..859680,859793..859983,860030..860074)	Theileria parva strain Muguga	3500297
TpMuguga_03g00416	CDS	leuS	NW_876245.1	860180	862936	R	tRNA synthetases class I (I L M and V) family protein	complement(860180..862936)	Theileria parva strain Muguga	3500298
TpMuguga_03g00417	CDS	TpMuguga_03g00417	NW_876245.1	863288	864829	D	uncharacterized protein	join(863288..863361,863457..863604,863707..863959,864071..864346,864432..864829)	Theileria parva strain Muguga	3500435
TpMuguga_03g00418	CDS	NAA38	NW_876245.1	865105	865568	D	LSM domain protein	join(865105..865135,865255..865423,865484..865568)	Theileria parva strain Muguga	3500436
TpMuguga_03g00420	CDS	P4HA2	NW_876245.1	865618	866598	R	2OG-Fe(II) oxygenase superfamily protein	complement(join(865618..865817,865902..866130,866263..866598))	Theileria parva strain Muguga	3500437
TpMuguga_03g00419	CDS	pdiA	NW_876245.1	867065	869046	D	Thioredoxin family protein	join(867065..867261,867394..867592,867679..868414,868562..869046)	Theileria parva strain Muguga	3500438
TpMuguga_03g00421	CDS	DHDDS	NW_876245.1	869323	870491	D	putative undecaprenyl diphosphate synthase family protein	join(869323..869336,869368..869515,869587..869729,869845..869961,869994..870222,870339..870491)	Theileria parva strain Muguga	3500439
TpMuguga_03g00422	CDS	TpMuguga_03g00422	NW_876245.1	870544	871911	R	uncharacterized protein	complement(870544..871911)	Theileria parva strain Muguga	3500440
TpMuguga_03g00423	CDS	Ash2l	NW_876245.1	872250	873648	R	SPRY domain protein	complement(join(872250..872323,872386..872474,872553..872637,872716..872814,872865..872995,873037..873129,873162..873208,873376..873470,873546..873648))	Theileria parva strain Muguga	3500195
TpMuguga_03g02645	CDS	TpMuguga_03g02645	NW_876245.1	874788	876670	D	Eukaryotic and archaeal DNA primase large subunit family protein	join(874788..874809,874842..874899,875019..875202,875254..875306,875371..875425,875461..875537,875594..875687,875758..875848,875917..876012,876074..876143,876325..876670)	Theileria parva strain Muguga	3500196
TpMuguga_03g00425	CDS	NBP35	NW_876245.1	876729	878013	R	Cytosolic Fe-S cluster assembly factor NBP35	complement(join(876729..876984,877120..877723,877778..877825,877857..878013))	Theileria parva strain Muguga	3500197
TpMuguga_03g02195	CDS	PIP5K4	NW_876245.1	878476	880240	D	MORN repeat-containing protein 4 domain protein	join(878476..878572,878670..878884,878953..879037,879120..879222,879337..879423,879455..879540,879663..880240)	Theileria parva strain Muguga	3500199
TpMuguga_03g00428	CDS	rps28b	NW_876245.1	880467	880670	R	40S ribosomal protein S28-B	complement(880467..880670)	Theileria parva strain Muguga	3500238
TpMuguga_03g00429	CDS	Imp3	NW_876245.1	881046	881851	R	U3 small nucleolar ribonucleoprotein IMP3	complement(join(881046..881200,881288..881442,881512..881619,881718..881851))	Theileria parva strain Muguga	3500239
TpMuguga_03g00430	CDS	TpMuguga_03g00430	NW_876245.1	881981	883338	R	Ribosome-binding factor A family protein	complement(join(881981..882537,882602..882779,882830..883116,883185..883338))	Theileria parva strain Muguga	3500240
TpMuguga_03g00432	CDS	rfc4	NW_876245.1	885139	886687	D	Replication factor C subunit 4	join(885139..885273,885392..885498,885531..885654,885772..885906,885939..886040,886105..886170,886203..886274,886357..886479,886547..886605,886636..886687)	Theileria parva strain Muguga	3500242
TpMuguga_03g00433	CDS	Ddx56	NW_876245.1	886949	888920	R	DEAD/DEAH box helicase family protein	complement(join(886949..887734,887803..887899,888032..888687,888759..888920))	Theileria parva strain Muguga	3500232
TpMuguga_03g00434	CDS	SPAG1	NW_876245.1	889080	890115	D	Sperm-associated antigen 1	join(889080..889601,889689..889786,889887..889927,889961..890115)	Theileria parva strain Muguga	3500233
TpMuguga_03g00435	CDS	TpMuguga_03g00435	NW_876245.1	890441	890923	R	Mnd1 family protein	complement(join(890441..890534,890602..890655,890688..890757,890791..890923))	Theileria parva strain Muguga	3500234
TpMuguga_03g00436	CDS	TpMuguga_03g00436	NW_876245.1	891044	893312	R	uncharacterized protein	complement(join(891044..891198,891270..891330,891362..891559,891639..891703,891800..892032,892118..892614,892699..892773,892805..892941,893011..893164,893229..893312))	Theileria parva strain Muguga	3500235
TpMuguga_03g00437	CDS	TpMuguga_03g00437	NW_876245.1	893488	894095	R	uncharacterized protein	complement(join(893488..893612,893661..893691,893749..893856,893952..894095))	Theileria parva strain Muguga	3500236
TpMuguga_03g00438	CDS	TpMuguga_03g00438	NW_876245.1	895886	898146	D	uncharacterized protein	join(895886..896774,896852..898056,898141..898146)	Theileria parva strain Muguga	3500237
TpMuguga_03g00439	CDS	TpMuguga_03g00439	NW_876245.1	898530	900631	D	uncharacterized protein	join(898530..900189,900263..900447,900479..900631)	Theileria parva strain Muguga	3500200
TpMuguga_03g00440	CDS	TpMuguga_03g00440	NW_876245.1	900808	901023	D	uncharacterized protein	900808..901023	Theileria parva strain Muguga	3500201
TpMuguga_03g00441	CDS	TpMuguga_03g00441	NW_876245.1	901325	902644	D	putative integral membrane protein	901325..902644	Theileria parva strain Muguga	3500202
TpMuguga_03g00442	CDS	TpMuguga_03g00442	NW_876245.1	902961	903822	D	uncharacterized protein	join(902961..903108,903278..903822)	Theileria parva strain Muguga	3500203
TpMuguga_03g00443	CDS	ruvbl2	NW_876245.1	903957	905938	R	TIP49 C-terminus family protein	complement(join(903957..904019,904052..904131,904212..904356,904443..904608,904671..904853,904951..905441,905544..905662,905788..905938))	Theileria parva strain Muguga	3500204
TpMuguga_03g00444	CDS	Tmco1	NW_876245.1	906130	906849	R	Integral membrane protein DUF106 family protein	complement(join(906130..906196,906231..906476,906511..906574,906660..906849))	Theileria parva strain Muguga	3500205
TpMuguga_03g00445	CDS	PCNA	NW_876245.1	907180	908362	D	proliferating cell nuclear antigen (pcna)	join(907180..907342,907537..907692,907733..908013,908046..908102,908195..908362)	Theileria parva strain Muguga	3500169
TpMuguga_03g00446	CDS	PBG1	NW_876245.1	908449	909425	R	20S proteasome subunit beta 7	complement(join(908449..908509,908540..908741,908848..909195,909347..909425))	Theileria parva strain Muguga	3500170
TpMuguga_03g00447	CDS	NAP1	NW_876245.1	909568	910830	R	Nucleosome assembly protein (NAP) family protein	complement(join(909568..909687,909780..909836,909925..910005,910072..910434,910466..910606,910637..910704,910782..910830))	Theileria parva strain Muguga	3500171
TpMuguga_03g00448	CDS	ube2d2	NW_876245.1	911595	912471	D	Ubiquitin-conjugating enzyme E2 D2	join(911595..911618,911661..911764,911969..912038,912126..912273,912374..912471)	Theileria parva strain Muguga	3500172
TpMuguga_03g00449	CDS	TpMuguga_03g00449	NW_876245.1	912533	913282	R	uncharacterized protein	complement(join(912533..912716,912750..913194,913243..913282))	Theileria parva strain Muguga	3500173
TpMuguga_03g00450	CDS	TpMuguga_03g00450	NW_876245.1	913545	917205	D	uncharacterized protein	join(913545..913816,913975..915125,915218..915409,915572..917205)	Theileria parva strain Muguga	3500174
TpMuguga_03g00451	CDS	TpMuguga_03g00451	NW_876245.1	917771	921327	R	uncharacterized protein	complement(join(917771..920703,920923..921018,921085..921150,921197..921262,921297..921327))	Theileria parva strain Muguga	3500163
TpMuguga_03g00452	CDS	TpMuguga_03g00452	NW_876245.1	921423	922906	R	Tetratricopeptide repeat family protein	complement(join(921423..921542,921723..922046,922079..922249,922446..922525,922562..922677,922722..922830,922876..922906))	Theileria parva strain Muguga	3500164
TpMuguga_03g02625	CDS	CACTIN	NW_876245.1	923003	924791	R	Cactus-binding C-terminus of cactin family protein	complement(join(923003..923522,923676..923752,923782..923873,923902..924001,924042..924250,924281..924461,924492..924791))	Theileria parva strain Muguga	3500165
TpMuguga_03g00455	CDS	TpMuguga_03g00455	NW_876245.1	925189	926561	R	putative integral membrane protein	complement(join(925189..925385,925417..925517,925548..925686,925716..925812,925842..926120,926151..926185,926217..926318,926351..926561))	Theileria parva strain Muguga	3500167
TpMuguga_03g00456	CDS	tad3	NW_876245.1	926879	927951	D	Cytidine and deoxycytidylate deaminase zinc-binding region family protein	join(926879..927336,927389..927438,927521..927951)	Theileria parva strain Muguga	3500168
TpMuguga_03g00457	CDS	TpMuguga_03g00457	NW_876245.1	928077	928539	D	uncharacterized protein	join(928077..928180,928250..928381,928422..928539)	Theileria parva strain Muguga	3500150
TpMuguga_03g00458	CDS	TpMuguga_03g00458	NW_876245.1	928660	930382	D	putative integral membrane protein	join(928660..929127,929259..929335,929389..929556,929595..929669,929788..930382)	Theileria parva strain Muguga	3500151
TpMuguga_03g00459	CDS	TpMuguga_03g00459	NW_876245.1	930575	931546	R	uncharacterized protein	complement(930575..931546)	Theileria parva strain Muguga	3500152
TpMuguga_03g00460	CDS	TpMuguga_03g00460	NW_876245.1	932009	935083	R	FHA domain protein	complement(join(932009..934485,934534..935083))	Theileria parva strain Muguga	3500153
TpMuguga_03g00896	CDS	TpMuguga_03g00896	NW_876245.1	936269	937843	R	putative integral membrane protein	complement(936269..937843)	Theileria parva strain Muguga	3500154
TpMuguga_03g00897	CDS	TpMuguga_03g00897	NW_876245.1	938533	940110	R	putative integral membrane protein	complement(join(938533..939418,939452..940110))	Theileria parva strain Muguga	3500155
TpMuguga_03g00898	CDS	TpMuguga_03g00898	NW_876245.1	940870	942449	R	uncharacterized protein	complement(join(940870..941749,941782..942449))	Theileria parva strain Muguga	3500156
TpMuguga_03g00899	CDS	TpMuguga_03g00899	NW_876245.1	943312	944886	R	uncharacterized protein	complement(join(943312..944465,944523..944886))	Theileria parva strain Muguga	3500409
TpMuguga_03g00900	CDS	TpMuguga_03g00900	NW_876245.1	945829	947394	R	uncharacterized protein	complement(945829..947394)	Theileria parva strain Muguga	3500410
TpMuguga_03g00462	CDS	METAP1	NW_876245.1	948084	950185	D	Metallopeptidase family M24 family protein	join(948084..948343,948374..948519,948550..948667,948700..949623,949708..949819,949850..949992,950068..950185)	Theileria parva strain Muguga	3500411
TpMuguga_03g00463	CDS	TpMuguga_03g00463	NW_876245.1	950339	951913	R	uncharacterized protein	complement(join(950339..951483,951541..951913))	Theileria parva strain Muguga	3500412
TpMuguga_03g00901	CDS	TpMuguga_03g00901	NW_876245.1	952707	954275	R	putative integral membrane protein	complement(952707..954275)	Theileria parva strain Muguga	3500413
TpMuguga_03g00902	CDS	TpMuguga_03g00902	NW_876245.1	955036	956613	R	uncharacterized protein	complement(955036..956613)	Theileria parva strain Muguga	3500414
TpMuguga_03g00903	CDS	TpMuguga_03g00903	NW_876245.1	957611	959237	R	uncharacterized protein	complement(join(957611..958517,958585..959237))	Theileria parva strain Muguga	3500415
TpMuguga_03g00464	CDS	TpMuguga_03g00464	NW_876245.1	959790	960870	D	uncharacterized protein	join(959790..959856,959894..959982,960018..960056,960088..960378,960423..960487,960518..960554,960584..960641,960671..960870)	Theileria parva strain Muguga	3500416
TpMuguga_03g00465	CDS	TpMuguga_03g00465	NW_876245.1	961031	963565	R	uncharacterized protein	complement(join(961031..962250,962365..963565))	Theileria parva strain Muguga	3499995
TpMuguga_03g00466	CDS	Dmxl2	NW_876245.1	963874	969698	R	RAVE protein 1 C terminal family protein	complement(join(963874..964865,965093..969698))	Theileria parva strain Muguga	3499996
TpMuguga_03g00467	CDS	Nemf	NW_876245.1	970102	974052	R	Fibronectin-binding protein A N-terminus (FbpA) family protein	complement(join(970102..973398,973521..973739,973819..974052))	Theileria parva strain Muguga	3499997
TpMuguga_03g02615	CDS	TpMuguga_03g02615	NW_876245.1	974350	975396	D	Apoptosis-antagonizing transcription factor domain protein	join(974350..974593,974660..974883,974958..975041,975071..975170,975201..975283,975316..975396)	Theileria parva strain Muguga	3499998
TpMuguga_03g02170	CDS	TpMuguga_03g02170	NW_876245.1	975469	975783	D	uncharacterized protein	join(975469..975534,975566..975688,975721..975783)	Theileria parva strain Muguga	86047757
TpMuguga_03g00469	CDS	NHP6	NW_876245.1	975868	976152	R	uncharacterized protein	complement(975868..976152)	Theileria parva strain Muguga	3499999
TpMuguga_03g00470	CDS	orc1	NW_876245.1	977322	981003	D	ATPase family associated with various cellular activities (AAA) family protein	join(977322..977604,978016..978194,978437..978616,978751..978937,979147..979414,979586..979752,979825..979915,980017..980128,980376..980727,980906..981003)	Theileria parva strain Muguga	3500000
TpMuguga_03g00471	CDS	TpMuguga_03g00471	NW_876245.1	982021	983772	R	uncharacterized protein	complement(982021..983772)	Theileria parva strain Muguga	3499967
TpMuguga_03g00472	CDS	TpMuguga_03g00472	NW_876245.1	984681	985087	R	uncharacterized protein	complement(join(984681..984876,984906..985087))	Theileria parva strain Muguga	3499968
TpMuguga_03g00473	CDS	TpMuguga_03g00473	NW_876245.1	985171	985660	D	Signal recognition particle 14kD family protein	join(985171..985273,985436..985548,985589..985660)	Theileria parva strain Muguga	3499969
TpMuguga_03g00474	CDS	sua5	NW_876245.1	986633	988384	R	Telomere recombination family protein	complement(986633..988384)	Theileria parva strain Muguga	3499970
TpMuguga_03g00475	CDS	TpMuguga_03g00475	NW_876245.1	988406	989848	R	uncharacterized protein	complement(join(988406..988982,989016..989848))	Theileria parva strain Muguga	3499971
TpMuguga_03g00476	CDS	TpMuguga_03g00476	NW_876245.1	990050	991330	D	MED6 mediator sub complex component family protein	join(990050..990083,990137..990244,990275..990356,990407..990590,990907..990997,991061..991216,991245..991330)	Theileria parva strain Muguga	3499972
TpMuguga_03g00477	CDS	TpMuguga_03g00477	NW_876245.1	992004	992702	D	uncharacterized protein	992004..992702	Theileria parva strain Muguga	3499982
TpMuguga_03g02575	CDS	TpMuguga_03g02575	NW_876245.1	993382	993811	R	uncharacterized protein	complement(join(993382..993546,993603..993677,993710..993811))	Theileria parva strain Muguga	86047785
TpMuguga_03g00478	CDS	DED1	NW_876245.1	994068	997095	R	DEAD/DEAH box helicase family protein	complement(join(994068..996169,996972..997095))	Theileria parva strain Muguga	3499983
TpMuguga_03g00479	CDS	Atp8a1	NW_876245.1	998309	1004068	D	phospholipid-translocating P-type ATPase flippase family protein	join(998309..998361,998520..998697,999269..999785,1000140..1001066,1001543..1003639,1003878..1004068)	Theileria parva strain Muguga	3499984
TpMuguga_03g00480	CDS	Cltc	NW_876245.1	1004934	1012447	R	Clathrin heavy chain 1	complement(join(1004934..1006021,1006291..1007241,1007688..1008422,1009019..1010026,1010376..1010731,1011006..1011682,1012056..1012292,1012409..1012447))	Theileria parva strain Muguga	3499985
TpMuguga_03g00481	CDS	SSL1	NW_876245.1	1012665	1015638	D	Ssl1-like family protein	join(1012665..1012782,1013339..1013492,1013906..1013996,1014099..1014281,1014358..1014534,1014883..1014977,1015041..1015200,1015350..1015430,1015489..1015638)	Theileria parva strain Muguga	3499986
TpMuguga_03g00482	CDS	TpMuguga_03g00482	NW_876245.1	1016138	1016779	D	putative integral membrane protein	1016138..1016779	Theileria parva strain Muguga	3499944
TpMuguga_03g00483	CDS	TpMuguga_03g00483	NW_876245.1	1018608	1020370	R	putative integral membrane protein	complement(join(1018608..1018928,1018959..1019096,1019152..1019261,1019351..1019527,1020082..1020370))	Theileria parva strain Muguga	3499945
TpMuguga_03g00484	CDS	TpMuguga_03g00484	NW_876245.1	1020625	1026863	D	uncharacterized protein	join(1020625..1020747,1020869..1020964,1021163..1021260,1021962..1022169,1022274..1022401,1022923..1023067,1023334..1023470,1023527..1024068,1024443..1025718,1025771..1026863)	Theileria parva strain Muguga	3499946
TpMuguga_03g00485	CDS	TpMuguga_03g00485	NW_876245.1	1027543	1029699	R	uncharacterized protein	complement(1027543..1029699)	Theileria parva strain Muguga	3499947
TpMuguga_03g00486	CDS	TpMuguga_03g00486	NW_876245.1	1030338	1031071	R	putative integral membrane protein	complement(join(1030338..1030340,1030494..1030788,1030989..1031071))	Theileria parva strain Muguga	3499948
TpMuguga_03g00487	CDS	TpMuguga_03g00487	NW_876245.1	1031586	1032839	R	putative integral membrane protein	complement(join(1031586..1031731,1031921..1032037,1032335..1032605,1032696..1032839))	Theileria parva strain Muguga	3499949
TpMuguga_03g00488	CDS	rpl34	NW_876245.1	1033018	1033646	D	Ribosomal protein L34e	join(1033018..1033280,1033493..1033646)	Theileria parva strain Muguga	3499950
TpMuguga_03g00489	CDS	Dars	NW_876245.1	1033678	1036733	D	Aspartate--tRNA ligase cytoplasmic domain protein	join(1033678..1033858,1034231..1034419,1034595..1034700,1034774..1034853,1034919..1035031,1035062..1035115,1035351..1035839,1036119..1036733)	Theileria parva strain Muguga	3499951
TpMuguga_03g00904	CDS	TpMuguga_03g00904	NW_876245.1	1037073	1038912	R	Leucine carboxyl methyltransferase family protein	complement(join(1037073..1037306,1037465..1037558,1037616..1037677,1037708..1037755,1037786..1037845,1038192..1038320,1038395..1038672,1038702..1038787,1038851..1038912))	Theileria parva strain Muguga	3499952
TpMuguga_03g00490	CDS	CAFP	NW_876245.1	1039064	1044009	R	ATPase family associated with various cellular activities (AAA) family protein	complement(join(1039064..1039127,1039501..1039660,1040218..1040393,1040508..1040751,1040862..1040930,1041271..1041825,1042056..1042337,1042522..1042980,1043244..1044009))	Theileria parva strain Muguga	3499953
TpMuguga_03g00491	CDS	PMS1	NW_876245.1	1044428	1047706	D	DNA mismatch repair protein domain protein	join(1044428..1044554,1044584..1044670,1044723..1044796,1044827..1044961,1045180..1045475,1045685..1045973,1046040..1046833,1047001..1047088,1047123..1047436,1047535..1047706)	Theileria parva strain Muguga	3499954
TpMuguga_03g00492	CDS	TpMuguga_03g00492	NW_876245.1	1047911	1053208	D	uncharacterized protein	1047911..1053208	Theileria parva strain Muguga	3499938
TpMuguga_03g02580	CDS	UBP12	NW_876245.1	1053434	1058815	R	Ubiquitin carboxyl-terminal hydrolase family protein	complement(join(1053434..1055316,1055534..1056895,1057036..1058815))	Theileria parva strain Muguga	3499940
TpMuguga_03g00495	CDS	TpMuguga_03g00495	NW_876245.1	1059474	1060208	D	uncharacterized protein	join(1059474..1059606,1059663..1059732,1059881..1060208)	Theileria parva strain Muguga	3499941
TpMuguga_03g00496	CDS	rsmF	NW_876245.1	1060228	1061325	R	NOL1/NOP2/sun family protein	complement(1060228..1061325)	Theileria parva strain Muguga	3499942
TpMuguga_03g00497	CDS	TpMuguga_03g00497	NW_876245.1	1061508	1064315	D	Vps51/Vps67 family protein	1061508..1064315	Theileria parva strain Muguga	3499943
TpMuguga_03g00498	CDS	TpMuguga_03g00498	NW_876245.1	1065013	1066626	D	SVSP family protein	1065013..1066626	Theileria parva strain Muguga	3499914
TpMuguga_03g00499	CDS	TpMuguga_03g00499	NW_876245.1	1067779	1068348	D	putative integral membrane protein	1067779..1068348	Theileria parva strain Muguga	3499915
TpMuguga_03g00500	CDS	rabggtb	NW_876245.1	1068555	1069786	R	Geranylgeranyl transferase type-2 subunit beta 2	complement(join(1068555..1068808,1068838..1068918,1068975..1069219,1069252..1069301,1069332..1069415,1069496..1069786))	Theileria parva strain Muguga	3499916
TpMuguga_03g00501	CDS	TpMuguga_03g00501	NW_876245.1	1069939	1071338	D	uncharacterized protein	join(1069939..1069989,1070025..1070080,1070128..1070243,1070273..1070435,1070465..1070515,1070546..1070931,1070962..1071023,1071055..1071284,1071317..1071338)	Theileria parva strain Muguga	3499917
TpMuguga_03g00502	CDS	der	NW_876245.1	1071538	1073580	D	ribosome-associated GTPase EngA	join(1071538..1071792,1071835..1071878,1071913..1072006,1072041..1072106,1072138..1072269,1072311..1072390,1072419..1072487,1072528..1072640,1072670..1072761,1072792..1072956,1072985..1073107,1073138..1073251,1073324..1073448,1073481..1073580)	Theileria parva strain Muguga	3499918
TpMuguga_03g00503	CDS	DPH3	NW_876245.1	1073679	1074016	R	Diphthamide biosynthesis protein 3	complement(join(1073679..1073776,1073809..1074016))	Theileria parva strain Muguga	3499919
TpMuguga_03g00504	CDS	TpMuguga_03g00504	NW_876245.1	1074119	1074733	D	putative integral membrane protein	1074119..1074733	Theileria parva strain Muguga	3499932
TpMuguga_03g00505	CDS	TpMuguga_03g00505	NW_876245.1	1074841	1075624	R	ESCRT-II complex subunit family protein	complement(join(1074841..1075524,1075559..1075624))	Theileria parva strain Muguga	3499933
TpMuguga_03g00506	CDS	TpMuguga_03g00506	NW_876245.1	1075741	1076736	D	DDRGK domain protein	join(1075741..1075835,1075885..1076188,1076228..1076413,1076443..1076491,1076523..1076671,1076701..1076736)	Theileria parva strain Muguga	3499934
TpMuguga_03g00507	CDS	CCA1	NW_876245.1	1076849	1078973	R	Poly A polymerase head domain protein	complement(join(1076849..1076995,1077030..1077124,1077151..1077187,1077247..1077358,1077390..1077471,1077521..1077800,1077874..1078439,1078472..1078973))	Theileria parva strain Muguga	3499935
TpMuguga_03g00508	CDS	TpMuguga_03g00508	NW_876245.1	1079107	1079746	D	uncharacterized protein	join(1079107..1079331,1079371..1079484,1079528..1079593,1079645..1079746)	Theileria parva strain Muguga	3499936
TpMuguga_03g00509	CDS	TpMuguga_03g00509	NW_876245.1	1079955	1080587	D	uncharacterized protein	join(1079955..1079961,1080000..1080064,1080102..1080587)	Theileria parva strain Muguga	3499937
TpMuguga_03g00510	CDS	TpMuguga_03g00510	NW_876245.1	1080670	1081765	R	DHHC palmitoyltransferase family protein	complement(join(1080670..1080712,1080742..1080827,1080857..1081765))	Theileria parva strain Muguga	3499926
TpMuguga_03g00511	CDS	PRKG1	NW_876245.1	1082024	1085207	R	Protein kinase domain protein	complement(join(1082024..1082104,1082137..1082214,1082370..1082509,1082542..1082670,1082700..1082838,1082943..1083118,1083213..1083377,1083408..1083510,1083540..1085207))	Theileria parva strain Muguga	3499927
TpMuguga_03g00512	CDS	ACP5	NW_876245.1	1085433	1086717	R	Tartrate-resistant acid phosphatase type 5	complement(join(1085433..1086133,1086204..1086717))	Theileria parva strain Muguga	3499928
TpMuguga_03g00513	CDS	TpMuguga_03g00513	NW_876245.1	1086932	1088181	R	ZIP Zinc transporter family protein	complement(join(1086932..1087335,1087523..1087722,1087753..1087807,1087838..1087987,1088043..1088181))	Theileria parva strain Muguga	3499929
TpMuguga_03g00514	CDS	rpl3	NW_876245.1	1088510	1089789	R	50S ribosomal protein L3	complement(join(1088510..1088771,1088868..1089099,1089199..1089337,1089410..1089484,1089549..1089670,1089702..1089789))	Theileria parva strain Muguga	3499930
TpMuguga_03g00515	CDS	Hnrnpab	NW_876245.1	1090056	1091552	R	uncharacterized protein	complement(join(1090056..1090207,1090238..1090826,1090856..1090960,1091013..1091210,1091331..1091552))	Theileria parva strain Muguga	3499931
TpMuguga_03g00516	CDS	lsm-4	NW_876245.1	1091855	1092493	R	putative U6 snRNA-associated Sm-like protein LSm4	complement(join(1091855..1091916,1091967..1092005,1092043..1092154,1092255..1092353,1092413..1092454,1092488..1092493))	Theileria parva strain Muguga	3499920
TpMuguga_03g00517	CDS	TpMuguga_03g00517	NW_876245.1	1092769	1095676	D	uncharacterized protein	join(1092769..1093563,1093596..1093983,1094044..1094181,1094211..1094359,1094391..1094546,1094598..1094776,1094915..1095135,1095165..1095256,1095287..1095503,1095534..1095676)	Theileria parva strain Muguga	3499921
TpMuguga_03g02365	CDS	TpMuguga_03g02365	NW_876245.1	1095760	1096881	D	uncharacterized protein	join(1095760..1096701,1096747..1096881)	Theileria parva strain Muguga	86047774
TpMuguga_03g02480	CDS	TpMuguga_03g02480	NW_876245.1	1096964	1098646	D	uncharacterized protein	1096964..1098646	Theileria parva strain Muguga	3499922
TpMuguga_03g00519	CDS	TERT	NW_876245.1	1098678	1102245	D	Telomerase ribonucleoprotein complex - RNA binding domain protein	join(1098678..1098916,1098947..1099014,1099046..1102245)	Theileria parva strain Muguga	3499923
TpMuguga_03g00520	CDS	TpMuguga_03g00520	NW_876245.1	1102464	1103012	R	uncharacterized protein	complement(1102464..1103012)	Theileria parva strain Muguga	3499924
TpMuguga_03g00521	CDS	TpMuguga_03g00521	NW_876245.1	1103273	1104988	R	uncharacterized protein	complement(join(1103273..1103671,1103826..1103951,1103987..1104168,1104222..1104299,1104385..1104552,1104583..1104988))	Theileria parva strain Muguga	3499925
TpMuguga_03g00522	CDS	TpMuguga_03g00522	NW_876245.1	1105083	1105571	R	uncharacterized protein	complement(join(1105083..1105174,1105226..1105327,1105418..1105571))	Theileria parva strain Muguga	3499908
TpMuguga_03g02210	CDS	TpMuguga_03g02210	NW_876245.1	1105979	1106314	D	putative integral membrane protein	1105979..1106314	Theileria parva strain Muguga	86047760
TpMuguga_03g00523	CDS	TpMuguga_03g00523	NW_876245.1	1106408	1107438	R	uncharacterized protein	complement(join(1106408..1106539,1106573..1106680,1106795..1106953,1106996..1107057,1107088..1107146,1107176..1107296,1107327..1107438))	Theileria parva strain Muguga	3499909
TpMuguga_03g00524	CDS	TpMuguga_03g00524	NW_876245.1	1107580	1109540	R	uncharacterized protein	complement(join(1107580..1107754,1107784..1108313,1108343..1108377,1108408..1108467,1108510..1108623,1108652..1108891,1108922..1108970,1109000..1109326,1109358..1109482,1109516..1109540))	Theileria parva strain Muguga	3499910
TpMuguga_03g00525	CDS	TpMuguga_03g00525	NW_876245.1	1109633	1110313	D	uncharacterized protein	1109633..1110313	Theileria parva strain Muguga	3499911
TpMuguga_03g02585	CDS	TpMuguga_03g02585	NW_876245.1	1110427	1110528	R	uncharacterized protein	complement(1110427..1110528)	Theileria parva strain Muguga	86047786
TpMuguga_03g02655	CDS	TpMuguga_03g02655	NW_876245.1	1111404	1113761	D	AP2 domain protein	1111404..1113761	Theileria parva strain Muguga	3499912
TpMuguga_03g00527	CDS	TpMuguga_03g00527	NW_876245.1	1113963	1114619	D	Rubredoxin family protein	join(1113963..1114248,1114412..1114530,1114560..1114619)	Theileria parva strain Muguga	3499913
TpMuguga_03g00528	CDS	RNR1	NW_876245.1	1114696	1117392	R	Ribonucleoside-diphosphate reductase large subunit	complement(1114696..1117392)	Theileria parva strain Muguga	3499902
TpMuguga_03g00529	CDS	TpMuguga_03g00529	NW_876245.1	1118111	1120340	R	uncharacterized protein	complement(join(1118111..1118224,1118255..1118399,1118480..1118731,1118844..1118920,1118950..1119051,1119125..1119533,1119597..1119767,1119832..1120340))	Theileria parva strain Muguga	3499903
TpMuguga_03g00530	CDS	CLPR1	NW_876245.1	1120356	1121482	R	Clp protease family protein	complement(join(1120356..1120406,1120435..1120686,1120811..1120850,1120880..1120966,1120995..1121062,1121093..1121178,1121206..1121482))	Theileria parva strain Muguga	3499904
TpMuguga_03g00531	CDS	aph1	NW_876245.1	1121632	1122583	R	bis(5'-nucleosyl)-tetraphosphatase (Asymmetrical)	complement(join(1121632..1121722,1121879..1122003,1122052..1122165,1122398..1122583))	Theileria parva strain Muguga	3499905
TpMuguga_03g00532	CDS	ddx46	NW_876245.1	1123257	1127137	D	DEAD/DEAH box helicase family protein	join(1123257..1124646,1124862..1125995,1126091..1126152,1126182..1126238,1126307..1126599,1127047..1127137)	Theileria parva strain Muguga	3499906
TpMuguga_03g02225	CDS	UVR8	NW_876245.1	1127464	1134280	D	Regulator of chromosome condensation (RCC1) repeat family protein	join(1127464..1128244,1128341..1128585,1128740..1129006,1129344..1129592,1129688..1129829,1129942..1130193,1130223..1130566,1130875..1131032,1131112..1131202,1131232..1131303,1131332..1131475,1131515..1131814,1132024..1132235,1132283..1132344,1132426..1132692,1132806..1134280)	Theileria parva strain Muguga	3499896
TpMuguga_03g00536	CDS	TPT	NW_876245.1	1135369	1136421	R	Triose-phosphate Transporter family protein	complement(1135369..1136421)	Theileria parva strain Muguga	3499898
TpMuguga_03g00537	CDS	TpMuguga_03g00537	NW_876245.1	1137445	1139985	D	uncharacterized protein	join(1137445..1137672,1137725..1137799,1137908..1138111,1138630..1139160,1139878..1139985)	Theileria parva strain Muguga	3499899
TpMuguga_03g00538	CDS	Ank1	NW_876245.1	1140212	1143844	D	Ankyrin repeat family protein	1140212..1143844	Theileria parva strain Muguga	3499900
TpMuguga_03g00539	CDS	NDB1	NW_876245.1	1144383	1146088	D	NADH dehydrogenase	join(1144383..1144573,1144648..1146088)	Theileria parva strain Muguga	3499901
TpMuguga_03g00540	CDS	hus5	NW_876245.1	1147471	1148105	R	SUMO-conjugating enzyme ubc9	complement(join(1147471..1147599,1147629..1147832,1147956..1148105))	Theileria parva strain Muguga	3499861
TpMuguga_03g00541	CDS	TpMuguga_03g00541	NW_876245.1	1148757	1151291	D	Major Facilitator Superfamily protein	join(1148757..1148886,1148941..1149063,1149092..1149343,1149995..1150602,1150911..1151291)	Theileria parva strain Muguga	3499862
TpMuguga_03g00542	CDS	TpMuguga_03g00542	NW_876245.1	1151557	1152413	R	GINS complex family protein	complement(join(1151557..1151648,1151676..1151818,1151959..1152146,1152215..1152310,1152339..1152413))	Theileria parva strain Muguga	3499863
TpMuguga_03g00543	CDS	TpMuguga_03g00543	NW_876245.1	1153288	1157265	D	Major Facilitator Superfamily protein	join(1153288..1153390,1153813..1153935,1153989..1154240,1155678..1156237,1156619..1156894,1156924..1157265)	Theileria parva strain Muguga	3499864
TpMuguga_03g00544	CDS	TpMuguga_03g00544	NW_876245.1	1157507	1160466	D	putative integral membrane protein	join(1157507..1157612,1158844..1158966,1158996..1159247,1159374..1160074,1160101..1160373,1160404..1160466)	Theileria parva strain Muguga	3499865
TpMuguga_03g00545	CDS	TpMuguga_03g00545	NW_876245.1	1161834	1164064	D	Major Facilitator Superfamily protein	join(1161834..1161963,1162245..1162364,1162395..1162646,1162707..1163293,1163668..1163934,1163966..1164064)	Theileria parva strain Muguga	3499866
TpMuguga_03g00546	CDS	TpMuguga_03g00546	NW_876245.1	1164338	1166496	D	putative integral membrane protein	join(1164338..1165876,1166125..1166496)	Theileria parva strain Muguga	3499872
TpMuguga_03g00547	CDS	TpMuguga_03g00547	NW_876245.1	1166806	1167941	D	Transcription elongation factor Elf1 like family protein	join(1166806..1166933,1167047..1167941)	Theileria parva strain Muguga	3499873
TpMuguga_03g00548	CDS	TpMuguga_03g00548	NW_876245.1	1168169	1169933	D	putative integral membrane protein	join(1168169..1168763,1168925..1169166,1169517..1169582,1169614..1169767,1169797..1169933)	Theileria parva strain Muguga	3499874
TpMuguga_03g00549	CDS	Lig1	NW_876245.1	1170050	1174077	D	DNA ligase I ATP-dependent (dnl1) family protein	join(1170050..1170174,1170211..1170314,1170344..1170373,1170404..1170785,1170932..1171093,1171123..1171226,1171385..1171566,1171702..1171806,1171868..1172277,1172474..1172663,1172777..1172996,1173170..1173324,1173465..1173650,1173680..1173787,1173964..1174077)	Theileria parva strain Muguga	3499875
TpMuguga_03g00550	CDS	TpMuguga_03g00550	NW_876245.1	1174476	1176059	R	PUB domain protein	complement(join(1174476..1174543,1174573..1174900,1174966..1175100,1175181..1175256,1175518..1175858,1175925..1176059))	Theileria parva strain Muguga	3499876
TpMuguga_03g00551	CDS	TpMuguga_03g00551	NW_876245.1	1176276	1177135	R	putative carnitine deficiency-associated family protein	complement(join(1176276..1176349,1176397..1176702,1176783..1176918,1176950..1177135))	Theileria parva strain Muguga	3500461
TpMuguga_03g00552	CDS	TpMuguga_03g00552	NW_876245.1	1177569	1179877	D	RING finger protein 5	join(1177569..1178478,1178580..1179877)	Theileria parva strain Muguga	3500462
TpMuguga_03g00553	CDS	TpMuguga_03g00553	NW_876245.1	1180338	1182821	D	SET domain protein	join(1180338..1182191,1182354..1182443,1182561..1182821)	Theileria parva strain Muguga	3500463
TpMuguga_03g00554	CDS	TpMuguga_03g00554	NW_876245.1	1182902	1183819	R	uncharacterized protein	complement(1182902..1183819)	Theileria parva strain Muguga	3500464
TpMuguga_03g02220	CDS	TpMuguga_03g02220	NW_876245.1	1183991	1184573	R	uncharacterized protein	complement(join(1183991..1184314,1184422..1184477,1184510..1184573))	Theileria parva strain Muguga	86047762
TpMuguga_03g02230	CDS	TpMuguga_03g02230	NW_876245.1	1184813	1188716	R	uncharacterized protein	complement(join(1184813..1185730,1185859..1188551,1188581..1188716))	Theileria parva strain Muguga	3500465
TpMuguga_03g02540	CDS	TpMuguga_03g02540	NW_876245.1	1189041	1192850	D	uncharacterized protein	join(1189041..1189194,1189236..1189404,1189438..1189599,1189657..1189759,1189813..1189958,1190041..1190170,1190200..1190267,1190346..1190439,1190473..1190554,1190585..1190917,1191002..1191926,1192076..1192202,1192317..1192850)	Theileria parva strain Muguga	3500466
TpMuguga_03g02180	CDS	TpMuguga_03g02180	NW_876245.1	1192904	1194416	D	uncharacterized protein	join(1192904..1193137,1193267..1193546,1193752..1193927,1194051..1194130,1194273..1194302,1194332..1194416)	Theileria parva strain Muguga	3499867
TpMuguga_03g00558	CDS	G6PD	NW_876245.1	1194747	1198055	R	Glucose-6-phosphate dehydrogenase domain protein	complement(join(1194747..1195938,1196221..1196950,1197061..1197543,1197851..1198055))	Theileria parva strain Muguga	3499868
TpMuguga_03g02345	CDS	TpMuguga_03g02345	NW_876245.1	1199005	1199286	R	putative integral membrane protein	complement(1199005..1199286)	Theileria parva strain Muguga	86047773
TpMuguga_03g00559	CDS	TpMuguga_03g00559	NW_876245.1	1199658	1201021	R	uncharacterized protein	complement(join(1199658..1199891,1200060..1200634,1200754..1200821,1200924..1201021))	Theileria parva strain Muguga	3499869
TpMuguga_03g00560	CDS	cpsf3	NW_876245.1	1201357	1204410	D	Beta-Casp domain protein	join(1201357..1201708,1201889..1202451,1202639..1202729,1202832..1203016,1203163..1203309,1203415..1203849,1203938..1204198,1204318..1204410)	Theileria parva strain Muguga	3499870
TpMuguga_03g00561	CDS	TpMuguga_03g00561	NW_876245.1	1204696	1206762	D	putative integral membrane protein	join(1204696..1204891,1205105..1206762)	Theileria parva strain Muguga	3499871
TpMuguga_03g02320	CDS	TpMuguga_03g02320	NW_876245.1	1208251	1209939	D	uncharacterized protein	1208251..1209939	Theileria parva strain Muguga	3500381
TpMuguga_03g00563	CDS	TpMuguga_03g00563	NW_876245.1	1210398	1211933	D	uncharacterized protein	1210398..1211933	Theileria parva strain Muguga	3500382
TpMuguga_03g00564	CDS	TpMuguga_03g00564	NW_876245.1	1213112	1214018	D	putative integral membrane protein	join(1213112..1213160,1213350..1213493,1213615..1213641,1213744..1214018)	Theileria parva strain Muguga	3500383
TpMuguga_03g00565	CDS	RFC1	NW_876245.1	1214372	1218456	D	Replication factor RFC1 C terminal domain protein	join(1214372..1215971,1216145..1216414,1216447..1216583,1216768..1217001,1217102..1217230,1217380..1217475,1217505..1217567,1217650..1217732,1217761..1217860,1218097..1218456)	Theileria parva strain Muguga	3500384
TpMuguga_03g02185	CDS	TpMuguga_03g02185	NW_876245.1	1217854	1218074	R	uncharacterized protein	complement(join(1217854..1217880,1217934..1218004,1218062..1218074))	Theileria parva strain Muguga	86047758
TpMuguga_03g02200	CDS	TpMuguga_03g02200	NW_876245.1	1219150	1219350	D	uncharacterized protein	1219150..1219350	Theileria parva strain Muguga	86047759
TpMuguga_03g00566	CDS	RPS30	NW_876245.1	1219563	1219802	R	40S ribosomal protein S30	complement(join(1219563..1219741,1219799..1219802))	Theileria parva strain Muguga	3500385
TpMuguga_03g00567	CDS	vps45	NW_876245.1	1220354	1222605	D	Sec1 family protein	join(1220354..1222010,1222176..1222312,1222450..1222605)	Theileria parva strain Muguga	3500386
TpMuguga_03g02660	CDS	TpMuguga_03g02660	NW_876245.1	1222605	1223260	D	putative integral membrane protein	join(1222605..1222878,1223097..1223260)	Theileria parva strain Muguga	3499850
TpMuguga_03g00569	CDS	ATP5A1	NW_876245.1	1223369	1225876	R	ATP synthase F1 subunit alpha	complement(join(1223369..1223826,1224076..1224267,1224415..1224552,1224710..1225218,1225333..1225505,1225709..1225876))	Theileria parva strain Muguga	3499851
TpMuguga_03g00570	CDS	CSP4	NW_876245.1	1226120	1226404	R	Cold-shock' DNA-binding domain protein	complement(1226120..1226404)	Theileria parva strain Muguga	3499852
TpMuguga_03g00571	CDS	TpMuguga_03g00571	NW_876245.1	1227033	1229896	D	CECR6/TMEM121 family protein	join(1227033..1227855,1227988..1228138,1228264..1228468,1228616..1228942,1229092..1229242,1229418..1229896)	Theileria parva strain Muguga	3499853
TpMuguga_03g02500	CDS	TpMuguga_03g02500	NW_876245.1	1230031	1231813	R	putative integral membrane protein	complement(join(1230031..1230752,1230973..1231813))	Theileria parva strain Muguga	3499854
TpMuguga_03g02385	CDS	TpMuguga_03g02385	NW_876245.1	1232320	1233222	R	uncharacterized protein	complement(join(1232320..1232394,1232466..1232524,1232556..1232773,1232807..1232868,1232974..1233222))	Theileria parva strain Muguga	86047775
TpMuguga_03g02390	CDS	smkA	NW_876245.1	1233267	1237319	R	Component of IIS longevity pathway SMK-1 family protein	complement(join(1233267..1233322,1233352..1233447,1233558..1233987,1234333..1235807,1235991..1236222,1236305..1236458,1236602..1236689,1236853..1237003,1237149..1237319))	Theileria parva strain Muguga	3499855
TpMuguga_03g02395	CDS	Pola2	NW_876245.1	1237780	1240893	R	DNA polymerase alpha/epsilon subunit B family protein	complement(join(1237780..1238177,1238356..1238440,1238470..1238549,1238663..1238714,1238883..1238966,1239057..1239139,1239237..1239312,1239462..1239514,1239546..1239609,1239642..1239680,1239771..1239817,1239970..1240045,1240077..1240240,1240445..1240775,1240846..1240893))	Theileria parva strain Muguga	3499857
TpMuguga_03g00576	CDS	utp7	NW_876245.1	1241167	1243924	R	BING4CT (NUC141) domain protein	complement(join(1241167..1241352,1241483..1241677,1241822..1241962,1242152..1242363,1242395..1242470,1242688..1242838,1242868..1242938,1242994..1243061,1243093..1243150,1243366..1243495,1243625..1243824,1243865..1243924))	Theileria parva strain Muguga	3499858
TpMuguga_03g00577	CDS	TpMuguga_03g00577	NW_876245.1	1244225	1245052	D	Cwf15/Cwc15 cell cycle control family protein	join(1244225..1244279,1244323..1244851,1244989..1245052)	Theileria parva strain Muguga	3499859
TpMuguga_03g00578	CDS	OLA1	NW_876245.1	1245130	1247316	R	Obg-like ATPase 1	complement(join(1245130..1245199,1245227..1245272,1245482..1245556,1245597..1245741,1245886..1246127,1246289..1246526,1246738..1246910,1246944..1246967,1247105..1247223,1247264..1247316))	Theileria parva strain Muguga	3499860
TpMuguga_03g02450	CDS	TpMuguga_03g02450	NW_876245.1	1248254	1250228	D	Cytochrome c oxidase biogenesis protein Cmc1 like family protein	join(1248254..1248755,1248954..1249085,1249169..1249557,1249670..1249736,1249768..1249815,1249849..1249909,1249939..1250059,1250112..1250228)	Theileria parva strain Muguga	3499844
TpMuguga_03g00580	CDS	TpMuguga_03g00580	NW_876245.1	1250629	1252002	R	uncharacterized protein	complement(1250629..1252002)	Theileria parva strain Muguga	3499845
TpMuguga_03g00581	CDS	TpMuguga_03g00581	NW_876245.1	1252618	1253541	R	uncharacterized protein	complement(1252618..1253541)	Theileria parva strain Muguga	3499846
TpMuguga_03g00582	CDS	TpMuguga_03g00582	NW_876245.1	1253752	1254669	R	uncharacterized protein	complement(1253752..1254669)	Theileria parva strain Muguga	3499847
TpMuguga_03g02530	CDS	TpMuguga_03g02530	NW_876245.1	1254890	1256718	R	uncharacterized protein	complement(join(1254890..1255030,1255071..1255137,1255166..1255413,1255547..1256053,1256085..1256591,1256635..1256718))	Theileria parva strain Muguga	3499848
TpMuguga_03g00585	CDS	TpMuguga_03g00585	NW_876245.1	1256922	1257734	D	uncharacterized protein	join(1256922..1256942,1256981..1257091,1257129..1257282,1257315..1257415,1257446..1257565,1257596..1257651,1257683..1257734)	Theileria parva strain Muguga	3499838
TpMuguga_03g00586	CDS	TpMuguga_03g00586	NW_876245.1	1257893	1259101	D	Queuine tRNA-ribosyltransferase family protein	1257893..1259101	Theileria parva strain Muguga	3499839
TpMuguga_03g00587	CDS	TpMuguga_03g00587	NW_876245.1	1259278	1261367	D	Tetratricopeptide repeat family protein	join(1259278..1259487,1259521..1259593,1259623..1259685,1259759..1259928,1259960..1260097,1260129..1260362,1260424..1260606,1260672..1260729,1260773..1260873,1260904..1261068,1261101..1261308,1261348..1261367)	Theileria parva strain Muguga	3499840
TpMuguga_03g00588	CDS	TpMuguga_03g00588	NW_876245.1	1262125	1262625	R	uncharacterized protein	complement(join(1262125..1262450,1262529..1262625))	Theileria parva strain Muguga	3499841
TpMuguga_03g02510	CDS	TpMuguga_03g02510	NW_876245.1	1263415	1276200	R	AAA domain (dynein-related subfamily) family protein	complement(join(1263415..1263448,1263482..1263904,1264023..1264072,1264105..1264342,1264406..1264775,1264913..1270696,1270782..1272764,1272813..1272917,1272949..1275539,1275602..1276200))	Theileria parva strain Muguga	3499843
TpMuguga_03g00592	CDS	TpMuguga_03g00592	NW_876245.1	1276422	1277249	R	Mitochondrial glycofamily protein	complement(join(1276422..1276828,1276905..1276964,1277009..1277249))	Theileria parva strain Muguga	3500448
TpMuguga_03g00593	CDS	fma2	NW_876245.1	1278001	1279665	R	metallopeptidase family protein M24	complement(join(1278001..1278213,1278274..1278479,1278567..1278854,1278923..1279087,1279145..1279303,1279395..1279665))	Theileria parva strain Muguga	3500450
TpMuguga_03g00594	CDS	COX15	NW_876245.1	1279726	1281202	D	Cytochrome oxidase assembly family protein	join(1279726..1280008,1280038..1280186,1280272..1280452,1280508..1280601,1280632..1281202)	Theileria parva strain Muguga	3500451
TpMuguga_03g00595	CDS	TpMuguga_03g00595	NW_876245.1	1281264	1282160	R	Ydr279p protein family (RNase H2 complex component) family protein	complement(1281264..1282160)	Theileria parva strain Muguga	3500452
TpMuguga_03g00596	CDS	TpMuguga_03g00596	NW_876245.1	1282417	1282986	D	uncharacterized protein	1282417..1282986	Theileria parva strain Muguga	3500453
TpMuguga_03g00597	CDS	TpMuguga_03g00597	NW_876245.1	1283142	1287837	R	uncharacterized protein	complement(join(1283142..1283731,1283811..1287275,1287363..1287837))	Theileria parva strain Muguga	3500441
TpMuguga_03g02635	CDS	TpMuguga_03g02635	NW_876245.1	1288565	1291234	D	BOP1NT (NUC169) domain protein	join(1288565..1288835,1288897..1289048,1289089..1289174,1289206..1289283,1289383..1289620,1289689..1290198,1290263..1290331,1290363..1290429,1290477..1290696,1290759..1290902,1290969..1291043,1291075..1291234)	Theileria parva strain Muguga	3500442
TpMuguga_03g00600	CDS	TpMuguga_03g00600	NW_876245.1	1291486	1291978	D	uncharacterized protein	join(1291486..1291730,1291819..1291978)	Theileria parva strain Muguga	3500444
TpMuguga_03g00601	CDS	CBWD2	NW_876245.1	1292164	1293402	D	CobW/HypB/UreG nucleotide-binding domain protein	join(1292164..1292214,1292320..1292719,1292783..1293161,1293207..1293402)	Theileria parva strain Muguga	3500445
TpMuguga_03g00602	CDS	TpMuguga_03g00602	NW_876245.1	1293497	1294537	R	uncharacterized protein	complement(join(1293497..1294135,1294283..1294537))	Theileria parva strain Muguga	3500446
TpMuguga_03g00603	CDS	RPL35AA	NW_876245.1	1295272	1295752	D	60S ribosomal protein L35a-3	join(1295272..1295354,1295482..1295752)	Theileria parva strain Muguga	3500454
TpMuguga_03g00604	CDS	TpMuguga_03g00604	NW_876245.1	1295833	1296435	R	Ribosomal L28e family protein	complement(join(1295833..1295998,1296071..1296158,1296267..1296435))	Theileria parva strain Muguga	3500455
TpMuguga_03g00605	CDS	TpMuguga_03g00605	NW_876245.1	1296594	1297097	D	uncharacterized protein	join(1296594..1296872,1296936..1297097)	Theileria parva strain Muguga	3500456
TpMuguga_03g00606	CDS	TpMuguga_03g00606	NW_876245.1	1297413	1298037	D	uncharacterized protein	join(1297413..1297635,1297769..1298037)	Theileria parva strain Muguga	3500457
TpMuguga_03g00607	CDS	TpMuguga_03g00607	NW_876245.1	1298042	1299922	D	uncharacterized protein	join(1298042..1299655,1299725..1299922)	Theileria parva strain Muguga	3500458
TpMuguga_03g02630	CDS	TpMuguga_03g02630	NW_876245.1	1299919	1300181	R	uncharacterized protein	complement(join(1299919..1299985,1300093..1300181))	Theileria parva strain Muguga	86047789
TpMuguga_03g00608	CDS	TpMuguga_03g00608	NW_876245.1	1300417	1304064	R	putative integral membrane protein	complement(join(1300417..1303292,1303359..1303842,1303954..1304064))	Theileria parva strain Muguga	3500459
TpMuguga_03g00609	CDS	Icl1e	NW_876245.1	1305320	1306039	D	EF-hand domain pair family protein	join(1305320..1305440,1305601..1305755,1305812..1306039)	Theileria parva strain Muguga	3500460
TpMuguga_03g00610	CDS	TpMuguga_03g00610	NW_876245.1	1306934	1307641	R	putative integral membrane protein	complement(1306934..1307641)	Theileria parva strain Muguga	3500387
TpMuguga_03g02340	CDS	TpMuguga_03g02340	NW_876245.1	1307842	1308078	R	putative integral membrane protein	complement(join(1307842..1308000,1308049..1308078))	Theileria parva strain Muguga	86047772
TpMuguga_03g02335	CDS	TpMuguga_03g02335	NW_876245.1	1308104	1308523	R	Mitochondrial large subunit ribosomal protein (Img2) family protein	complement(join(1308104..1308127,1308167..1308357,1308421..1308523))	Theileria parva strain Muguga	3500388
TpMuguga_03g02515	CDS	hdaC	NW_876245.1	1310487	1316226	R	Histone deacetylase domain protein	complement(join(1310487..1311896,1312081..1312327,1312530..1312659,1312881..1313288,1313320..1313460,1313606..1314517,1314663..1316226))	Theileria parva strain Muguga	3500389
TpMuguga_03g00614	CDS	TpMuguga_03g00614	NW_876244.1	1	832	R	uncharacterized protein	complement(<1..832)	Theileria parva strain Muguga	3499588
TpMuguga_03g00615	CDS	TpMuguga_03g00615	NW_876244.1	1449	2195	R	uncharacterized protein	complement(1449..2195)	Theileria parva strain Muguga	3499589
TpMuguga_03g00616	CDS	TpMuguga_03g00616	NW_876244.1	3580	4323	R	uncharacterized protein	complement(3580..4323)	Theileria parva strain Muguga	3499590
TpMuguga_03g00617	CDS	TpMuguga_03g00617	NW_876244.1	5412	7799	R	uncharacterized protein	complement(5412..7799)	Theileria parva strain Muguga	3499591
TpMuguga_03g00618	CDS	TpMuguga_03g00618	NW_876244.1	8461	8793	D	putative integral membrane protein	8461..8793	Theileria parva strain Muguga	86047743
TpMuguga_03g00619	CDS	EMG1	NW_876244.1	9316	10214	D	EMG1/NEP1 methyltransferase family protein	join(9316..9425,9509..10214)	Theileria parva strain Muguga	3499582
TpMuguga_03g00620	CDS	TpMuguga_03g00620	NW_876244.1	10406	12182	R	uncharacterized protein	complement(join(10406..10501,10534..10655,10833..11175,11322..12182))	Theileria parva strain Muguga	3499583
TpMuguga_03g02165	CDS	TpMuguga_03g02165	NW_876244.1	12517	12894	R	uncharacterized protein	complement(12517..12894)	Theileria parva strain Muguga	86047756
TpMuguga_03g00621	CDS	TpMuguga_03g00621	NW_876244.1	13023	14919	R	uncharacterized protein	complement(join(13023..13314,13436..14919))	Theileria parva strain Muguga	3499584
TpMuguga_03g02005	CDS	SOH1	NW_876244.1	14962	15396	R	SOH1 family protein	complement(join(14962..15260,15351..15396))	Theileria parva strain Muguga	86047745
TpMuguga_03g00622	CDS	UBL5	NW_876244.1	15562	15957	D	Ubiquitin-like protein 5	join(15562..15570,15651..15756,15842..15957)	Theileria parva strain Muguga	3499585
TpMuguga_03g00623	CDS	Zdhhc18	NW_876244.1	16584	17471	D	DHHC palmitoyltransferase family protein	16584..17471	Theileria parva strain Muguga	3499586
TpMuguga_03g00624	CDS	TpMuguga_03g00624	NW_876244.1	17639	18622	R	uncharacterized protein	complement(17639..18622)	Theileria parva strain Muguga	3499587
TpMuguga_03g02080	CDS	dnaJ	NW_876244.1	19096	21780	D	DnaJ domain protein	join(19096..19152,19218..19464,19643..21536,21714..21780)	Theileria parva strain Muguga	3499575
TpMuguga_03g00627	CDS	TpMuguga_03g00627	NW_876244.1	21806	23544	R	Inositol polyphosphate kinase family protein	complement(join(21806..21865,22057..22264,22294..22367,22439..22600,22712..22824,22913..22991,23036..23100,23184..23544))	Theileria parva strain Muguga	3499577
TpMuguga_03g02100	CDS	rpiA	NW_876244.1	23748	24750	D	ribose 5-phosphate isomerase A	join(23748..23786,23827..23988,24077..24256,24332..24580,24655..24750)	Theileria parva strain Muguga	3499578
TpMuguga_03g02120	CDS	TpMuguga_03g02120	NW_876244.1	24912	25688	D	uncharacterized protein	join(24912..25164,25318..25688)	Theileria parva strain Muguga	86047753
TpMuguga_03g00629	CDS	UFL1	NW_876244.1	26024	28737	D	Uncharacterized conserved protein (DUF2042) family protein	join(26024..28409,28685..28737)	Theileria parva strain Muguga	3499579
TpMuguga_03g02115	CDS	TpMuguga_03g02115	NW_876244.1	28727	29793	R	SGS domain protein	complement(join(28727..28762,28794..28832,28894..28977,29011..29055,29085..29131,29254..29317,29360..29432,29469..29524,29611..29655,29698..29793))	Theileria parva strain Muguga	3499580
TpMuguga_03g02125	CDS	nadD	NW_876244.1	29840	30731	R	Cytidylyltransferase family protein	complement(join(29840..29944,30030..30225,30364..30731))	Theileria parva strain Muguga	3499567
TpMuguga_03g00632	CDS	TpMuguga_03g00632	NW_876244.1	31651	32067	R	uncharacterized protein	complement(31651..32067)	Theileria parva strain Muguga	3499569
TpMuguga_03g00633	CDS	TpMuguga_03g00633	NW_876244.1	32275	33225	R	uncharacterized protein	complement(32275..33225)	Theileria parva strain Muguga	3499570
TpMuguga_03g00634	CDS	TpMuguga_03g00634	NW_876244.1	33399	34193	R	uncharacterized protein	complement(33399..34193)	Theileria parva strain Muguga	3499571
TpMuguga_03g00635	CDS	TpMuguga_03g00635	NW_876244.1	34354	35252	R	uncharacterized protein	complement(join(34354..35093,35126..35252))	Theileria parva strain Muguga	3499572
TpMuguga_03g00636	CDS	TpMuguga_03g00636	NW_876244.1	35405	36252	R	uncharacterized protein	complement(join(35405..36102,36135..36252))	Theileria parva strain Muguga	3499573
TpMuguga_03g00637	CDS	TpMuguga_03g00637	NW_876244.1	36435	36833	R	uncharacterized protein	complement(36435..36833)	Theileria parva strain Muguga	3499574
TpMuguga_03g00638	CDS	TpMuguga_03g00638	NW_876244.1	37486	38214	R	uncharacterized protein	complement(37486..38214)	Theileria parva strain Muguga	3499560
TpMuguga_03g00639	CDS	TpMuguga_03g00639	NW_876244.1	38578	39465	R	uncharacterized protein	complement(38578..39465)	Theileria parva strain Muguga	3499561
TpMuguga_03g00640	CDS	TpMuguga_03g00640	NW_876244.1	40203	42356	D	BTB And C-terminal Kelch family protein	join(40203..40249,40290..40356,40442..40559,40641..40728,40759..40991,41024..41190,41259..41405,41470..41641,41712..41928,41988..42165,42237..42356)	Theileria parva strain Muguga	3499562
TpMuguga_03g00641	CDS	TpMuguga_03g00641	NW_876244.1	42395	43354	R	uncharacterized protein	complement(join(42395..42615,42647..42721,42751..43354))	Theileria parva strain Muguga	3499563
TpMuguga_03g00642	CDS	TpMuguga_03g00642	NW_876244.1	43662	44408	D	Telomere stability and silencing family protein	43662..44408	Theileria parva strain Muguga	3499564
TpMuguga_03g00643	CDS	TpMuguga_03g00643	NW_876244.1	44522	45377	D	PRELI-like family protein	join(44522..44569,44609..44753,44794..44905,45066..45180,45273..45377)	Theileria parva strain Muguga	3499565
TpMuguga_03g00644	CDS	chl1	NW_876244.1	45407	48204	R	DNA repair helicase (rad3) family protein	complement(join(45407..45684,45890..46087,46117..46338,46371..46523,46554..46574,46633..47578,47608..47810,47891..47949,47991..48109,48145..48204))	Theileria parva strain Muguga	3499566
TpMuguga_03g02055	CDS	leng8	NW_876244.1	48655	51991	D	SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein	join(48655..48730,48766..49251,49281..49855,49886..49953,49988..50423,50517..50618,50651..50917,51142..51214,51245..51575,51779..51859,51892..51991)	Theileria parva strain Muguga	3499556
TpMuguga_03g00647	CDS	TpMuguga_03g00647	NW_876244.1	52214	54226	R	uncharacterized protein	complement(52214..54226)	Theileria parva strain Muguga	3499557
TpMuguga_03g00648	CDS	TpMuguga_03g00648	NW_876244.1	54745	55002	R	Mitotic-spindle organizing gamma-tubulin ring associated family protein	complement(54745..55002)	Theileria parva strain Muguga	3499558
TpMuguga_03g00649	CDS	TpMuguga_03g00649	NW_876244.1	55349	59035	D	uncharacterized protein	55349..59035	Theileria parva strain Muguga	3499559
TpMuguga_03g00650	CDS	rbm8a	NW_876244.1	59334	59735	D	RNA-binding protein 8A	join(59334..59364,59434..59625,59662..59735)	Theileria parva strain Muguga	3499550
TpMuguga_03g00651	CDS	Spt6	NW_876244.1	60296	66932	D	SH2 domain protein	join(60296..61018,61187..61540,61597..65638,65687..66006,66354..66932)	Theileria parva strain Muguga	3499551
TpMuguga_03g00652	CDS	TpMuguga_03g00652	NW_876244.1	67042	68594	D	uncharacterized protein	join(67042..68135,68462..68594)	Theileria parva strain Muguga	3499552
TpMuguga_03g00653	CDS	TpMuguga_03g00653	NW_876244.1	68634	69076	R	uncharacterized protein	complement(join(68634..68713,68758..69076))	Theileria parva strain Muguga	3499553
TpMuguga_03g00654	CDS	TpMuguga_03g00654	NW_876244.1	69311	75193	D	AAA domain protein	join(69311..69823,69854..69949,70025..70112,70144..70268,70319..70513,70654..70740,70770..70913,71411..71579,71610..71772,71802..72033,72066..72359,72387..72476,72526..72715,72987..73082,73116..73316,73374..73482,73730..73890,73933..74071,74123..74189,74220..74285,74539..74735,75002..75049,75079..75193)	Theileria parva strain Muguga	3499554
TpMuguga_03g02075	CDS	TpMuguga_03g02075	NW_876244.1	75322	76145	D	ATP synthase subunit H family protein	join(75322..75449,75570..75617,76022..76145)	Theileria parva strain Muguga	86047751
TpMuguga_03g00655	CDS	TpMuguga_03g00655	NW_876244.1	76436	77619	D	N4	join(76436..76686,77161..77351,77588..77619)	Theileria parva strain Muguga	3499831
TpMuguga_03g00656	CDS	TpMuguga_03g00656	NW_876244.1	77973	79659	D	3-oxo-5-alpha-steroid 4-dehydrogenase family protein	join(77973..78075,78106..78147,78177..78257,78343..78472,78673..78795,79126..79292,79415..79659)	Theileria parva strain Muguga	3499832
TpMuguga_03g00657	CDS	TpMuguga_03g00657	NW_876244.1	80446	83691	R	uncharacterized protein	complement(80446..83691)	Theileria parva strain Muguga	3499833
TpMuguga_03g00658	CDS	TpMuguga_03g00658	NW_876244.1	84240	84758	R	uncharacterized protein	complement(join(84240..84430,84452..84758))	Theileria parva strain Muguga	3499834
TpMuguga_03g00659	CDS	TpMuguga_03g00659	NW_876244.1	85489	87039	D	uncharacterized protein	85489..87039	Theileria parva strain Muguga	3499835
TpMuguga_03g00660	CDS	TpMuguga_03g00660	NW_876244.1	87329	89482	D	uncharacterized protein	87329..89482	Theileria parva strain Muguga	3499836
TpMuguga_03g02140	CDS	TpMuguga_03g02140	NW_876244.1	90137	93695	R	Cullin family protein	complement(join(90137..90382,90410..90496,90562..90656,90687..90759,90789..90824,90874..91265,91360..91450,91479..91582,91694..91757,91785..91937,92185..92409,92653..92784,92850..93012,93042..93112,93164..93317,93346..93437,93468..93586,93641..93695))	Theileria parva strain Muguga	3499592
TpMuguga_03g00663	CDS	TpMuguga_03g00663	NW_876244.1	94232	99460	D	uncharacterized protein	join(94232..94880,95149..95244,95275..99022,99162..99263,99331..99460)	Theileria parva strain Muguga	3499593
TpMuguga_03g00664	CDS	TpMuguga_03g00664	NW_876244.1	100154	101326	R	uncharacterized protein	complement(100154..101326)	Theileria parva strain Muguga	3499594
TpMuguga_03g00665	CDS	RER1	NW_876244.1	103595	104234	R	Rer1 family protein	complement(join(103595..103632,103667..104234))	Theileria parva strain Muguga	3499595
TpMuguga_03g00666	CDS	Rab7a	NW_876244.1	104549	106350	R	small GTP-binding protein Rab7	complement(join(104549..104732,105589..105875,105904..105962,106197..106264,106301..106350))	Theileria parva strain Muguga	3499596
TpMuguga_03g00667	CDS	DDX60	NW_876244.1	106780	113859	R	DEAD/DEAH box helicase family protein	complement(106780..113859)	Theileria parva strain Muguga	3499597
TpMuguga_03g02030	CDS	vps13F	NW_876244.1	115032	126940	D	Chorein domain protein	join(115032..120683,120735..126549,126581..126662,126808..126940)	Theileria parva strain Muguga	3499600
TpMuguga_03g00671	CDS	TpMuguga_03g00671	NW_876244.1	127097	127535	D	uncharacterized protein	join(127097..127218,127260..127357,127417..127535)	Theileria parva strain Muguga	3499601
TpMuguga_03g00672	CDS	AIFM3	NW_876244.1	127655	129999	R	Pyridine nucleotide-disulfide oxidoreductase family protein	complement(join(127655..127807,127838..127931,127978..128113,128144..128208,128238..128396,128428..128540,128609..128692,128726..128860,128890..129119,129148..129268,129299..129384,129449..129526,129557..129646,129680..129772,129813..129999))	Theileria parva strain Muguga	3499602
TpMuguga_03g00673	CDS	TpMuguga_03g00673	NW_876244.1	130105	130890	D	uncharacterized protein	join(130105..130306,130342..130418,130453..130589,130620..130890)	Theileria parva strain Muguga	3499603
TpMuguga_03g00674	CDS	ispH	NW_876244.1	131038	132300	R	4-hydroxy-3-methylbut-2-enyl diphosphate reductase LytB	complement(join(131038..131116,131148..131688,131718..131940,131989..132158,132198..132300))	Theileria parva strain Muguga	3499604
TpMuguga_03g00675	CDS	UBP25	NW_876244.1	132314	136003	R	Ubiquitin carboxyl-terminal hydrolase family protein	complement(132314..136003)	Theileria parva strain Muguga	3499605
TpMuguga_03g00676	CDS	TpMuguga_03g00676	NW_876244.1	136980	138492	D	Eukaryotic aspartyl protease family protein	join(136980..138121,138239..138338,138397..138492)	Theileria parva strain Muguga	3499606
TpMuguga_03g00677	CDS	Rcc1	NW_876244.1	138615	140480	R	Regulator of chromosome condensation (RCC1) repeat family protein	complement(join(138615..140320,140387..140480))	Theileria parva strain Muguga	3499607
TpMuguga_03g00678	CDS	TpMuguga_03g00678	NW_876244.1	141043	141694	R	putative integral membrane protein	complement(join(141043..141089,141127..141694))	Theileria parva strain Muguga	3499608
TpMuguga_03g00679	CDS	TpMuguga_03g00679	NW_876244.1	142176	142896	R	Got1/Sft2-like family protein	complement(join(142176..142261,142301..142793,142852..142896))	Theileria parva strain Muguga	3499609
TpMuguga_03g00680	CDS	TpMuguga_03g00680	NW_876244.1	143823	144551	D	uncharacterized protein	join(143823..143933,144117..144551)	Theileria parva strain Muguga	3499610
TpMuguga_03g00681	CDS	TpMuguga_03g00681	NW_876244.1	144651	145922	D	uncharacterized protein	join(144651..144869,144899..145366,145488..145922)	Theileria parva strain Muguga	3499611
TpMuguga_03g00682	CDS	TpMuguga_03g00682	NW_876244.1	146190	147602	D	uncharacterized protein	join(146190..146897,146928..147353,147384..147602)	Theileria parva strain Muguga	3499612
TpMuguga_03g00683	CDS	Rpl23a	NW_876244.1	148072	148673	D	60S ribosomal protein L23a	join(148072..148093,148155..148260,148302..148547,148589..148673)	Theileria parva strain Muguga	3499613
TpMuguga_03g00684	CDS	naa40	NW_876244.1	148709	149436	R	Acetyltransferase (GNAT) family protein	complement(join(148709..148912,148943..149040,149070..149436))	Theileria parva strain Muguga	3499614
TpMuguga_03g02105	CDS	TpMuguga_03g02105	NW_876244.1	149695	150178	D	Vacuolar (H+)-ATPase G subunit family protein	join(149695..149791,149845..149945,150032..150178)	Theileria parva strain Muguga	3499616
TpMuguga_03g02020	CDS	VPS52	NW_876244.1	150391	152901	D	Vps52 / Sac2 family protein	join(150391..151146,151178..151371,151403..152359,152389..152557,152646..152750,152782..152901)	Theileria parva strain Muguga	3499618
TpMuguga_03g00689	CDS	TpMuguga_03g00689	NW_876244.1	152978	153933	R	uncharacterized protein	complement(join(152978..153528,153558..153933))	Theileria parva strain Muguga	3499619
TpMuguga_03g00690	CDS	TpMuguga_03g00690	NW_876244.1	154676	155743	D	putative integral membrane protein	join(154676..155004,155036..155363,155397..155560,155611..155673,155713..155743)	Theileria parva strain Muguga	3499620
TpMuguga_03g00691	CDS	RBM39	NW_876244.1	156076	158099	D	splicing factor CC1-like family protein	join(156076..157710,157800..158099)	Theileria parva strain Muguga	3499621
TpMuguga_03g00692	CDS	top3	NW_876244.1	158302	161109	D	DNA topoisomerase family protein	join(158302..158385,158415..158506,158539..158612,158646..158715,158753..158813,158847..158916,158947..159005,159038..159074,159108..159177,159208..159315,159344..159394,159424..159484,159532..159574,159667..159879,159947..160147,160220..160292,160331..160397,160443..160505,160561..160611,160728..160799,160864..161109)	Theileria parva strain Muguga	3499622
TpMuguga_03g00693	CDS	TpMuguga_03g00693	NW_876244.1	161190	163750	R	TATA box binding protein associated factor (TAF) family protein	complement(join(161190..161575,161650..161731,161773..162090,162322..162429,162493..162668,162735..162825,162910..163446,163496..163750))	Theileria parva strain Muguga	3499623
TpMuguga_03g02015	CDS	TpMuguga_03g02015	NW_876244.1	163759	164812	R	uncharacterized protein	complement(join(163759..163828,163876..164068,164122..164812))	Theileria parva strain Muguga	86047746
TpMuguga_03g00694	CDS	TpMuguga_03g00694	NW_876244.1	165146	166105	R	uncharacterized protein	complement(join(165146..165320,165403..165502,165532..165581,165611..165727,165805..166013,166055..166105))	Theileria parva strain Muguga	3499624
TpMuguga_03g00695	CDS	ITPA	NW_876244.1	166315	167096	R	Inosine triphosphate pyrophosphatase	complement(join(166315..166341,166380..166604,166669..166729,166819..166957,166991..167096))	Theileria parva strain Muguga	3499625
TpMuguga_03g00696	CDS	TpMuguga_03g00696	NW_876244.1	167351	172552	R	uncharacterized protein	complement(167351..172552)	Theileria parva strain Muguga	3499626
TpMuguga_03g00697	CDS	TpMuguga_03g00697	NW_876244.1	172849	173637	R	Ribosomal S3Ae family protein	complement(172849..173637)	Theileria parva strain Muguga	3499627
TpMuguga_03g02065	CDS	TpMuguga_03g02065	NW_876244.1	174339	174621	R	Translation machinery associated TMA7 family protein	complement(join(174339..174396,174472..174566,174604..174621))	Theileria parva strain Muguga	86047749
TpMuguga_03g00698	CDS	tuf	NW_876244.1	174792	176226	R	translation elongation factor Tu	complement(join(174792..174926,175024..176226))	Theileria parva strain Muguga	3499628
TpMuguga_03g00699	CDS	TpMuguga_03g00699	NW_876244.1	176420	178292	R	Protein kinase domain protein	complement(join(176420..176505,176539..176605,176638..176897,176927..177036,177076..177192,177235..177373,177430..177526,177556..177590,177621..177681,177711..177746,177777..177846,177896..178000,178094..178169,178214..178292))	Theileria parva strain Muguga	3499629
TpMuguga_03g00700	CDS	TpMuguga_03g00700	NW_876244.1	178560	179298	R	SRP40 domain protein	complement(join(178560..178612,178644..178835,178866..179139,179173..179298))	Theileria parva strain Muguga	3499630
TpMuguga_03g02045	CDS	TpMuguga_03g02045	NW_876244.1	179626	180188	D	RNAse P Rpr2/Rpp21/SNM1 subunit domain protein	join(179626..179744,179799..179836,179872..180080,180111..180188)	Theileria parva strain Muguga	86047748
TpMuguga_03g00701	CDS	CRK3	NW_876244.1	180244	182355	R	Protein kinase domain protein	complement(join(180244..180313,180362..180444,180539..180651,180716..180838,180915..182355))	Theileria parva strain Muguga	3499631
TpMuguga_03g00702	CDS	TpMuguga_03g00702	NW_876244.1	182676	185041	D	uncharacterized protein	join(182676..182775,182883..184184,184268..184931,184990..185041)	Theileria parva strain Muguga	3499632
TpMuguga_03g00703	CDS	atad3-a	NW_876244.1	185224	187639	R	ATPase family AAA domain-containing protein 3-A	complement(join(185224..185334,185384..185674,185763..185979,186061..186263,186296..186352,186429..186503,186558..186681,186726..186864,186955..187061,187135..187262,187323..187459,187552..187639))	Theileria parva strain Muguga	3499633
TpMuguga_03g00704	CDS	mak16	NW_876244.1	188210	189006	D	Ribosomal L28e family protein	join(188210..188268,188300..188409,188477..189006)	Theileria parva strain Muguga	3499634
TpMuguga_03g00705	CDS	TpMuguga_03g00705	NW_876244.1	189062	190950	R	uncharacterized protein	complement(join(189062..189202,189297..190483,190527..190950))	Theileria parva strain Muguga	3499635
TpMuguga_03g02050	CDS	SMYD5	NW_876244.1	191067	192768	R	SET domain protein	complement(join(191067..191141,191185..191283,191314..191428,191459..191501,191537..191567,191599..191712,191767..191884,191913..191960,191991..192087,192117..192154,192183..192259,192291..192365,192399..192462,192506..192583,192617..192768))	Theileria parva strain Muguga	3499637
TpMuguga_03g00709	CDS	TpMuguga_03g00709	NW_876244.1	193065	194638	D	Met-10+ like-family protein	join(193065..193159,193192..193272,193305..193384,193417..193518,193548..193684,193720..193830,193860..193915,193946..194001,194033..194119,194151..194363,194394..194638)	Theileria parva strain Muguga	3499639
TpMuguga_03g00710	CDS	RPS17	NW_876244.1	195043	195539	D	40S ribosomal protein S17	join(195043..195045,195078..195142,195182..195278,195312..195539)	Theileria parva strain Muguga	3499640
TpMuguga_03g00711	CDS	TpMuguga_03g00711	NW_876244.1	196402	197946	D	uncharacterized protein	196402..197946	Theileria parva strain Muguga	3499641
TpMuguga_03g00712	CDS	Fnta	NW_876244.1	198073	199271	R	Protein prenyltransferase alpha subunit repeat family protein	complement(join(198073..198144,198173..198273,198303..198592,198623..198738,198772..198815,198848..199018,199073..199271))	Theileria parva strain Muguga	3499642
TpMuguga_03g00713	CDS	TpMuguga_03g00713	NW_876244.1	199277	200187	R	uncharacterized protein	complement(join(199277..199587,199627..200004,200070..200187))	Theileria parva strain Muguga	3499643
TpMuguga_03g00714	CDS	ssr2	NW_876244.1	200309	202322	R	SWIRM domain protein	complement(join(200309..200365,200400..200767,200799..201344,201374..201653,201685..201797,201828..201950,202010..202190,202263..202322))	Theileria parva strain Muguga	3499644
TpMuguga_03g00715	CDS	Gdi2	NW_876244.1	202432	204166	R	Rab GDP dissociation inhibitor	complement(join(202432..202449,202483..202528,202561..202628,202663..202760,202792..202893,203000..203860,203893..203985,204032..204092,204149..204166))	Theileria parva strain Muguga	3499645
TpMuguga_03g00716	CDS	RPS19A	NW_876244.1	204978	205487	D	40S ribosomal protein S19-2	204978..205487	Theileria parva strain Muguga	3499646
TpMuguga_03g00717	CDS	RPS12	NW_876244.1	205667	206095	R	40S ribosomal protein S12	complement(205667..206095)	Theileria parva strain Muguga	3499647
TpMuguga_03g00718	CDS	TpMuguga_03g00718	NW_876244.1	206867	208024	R	Domain found in IF2B/IF5 family protein	complement(206867..208024)	Theileria parva strain Muguga	3499648
TpMuguga_03g02060	CDS	TpMuguga_03g02060	NW_876244.1	209094	209679	D	Mago binding family protein	join(209094..209282,209314..209679)	Theileria parva strain Muguga	3499649
TpMuguga_03g02095	CDS	TpMuguga_03g02095	NW_876244.1	210388	210594	D	putative integral membrane protein	210388..210594	Theileria parva strain Muguga	86047752
TpMuguga_03g00720	CDS	TpMuguga_03g00720	NW_876244.1	211267	213088	D	putative integral membrane protein	join(211267..212943,213038..213088)	Theileria parva strain Muguga	3499650
TpMuguga_03g00721	CDS	TpMuguga_03g00721	NW_876244.1	213856	217401	D	putative integral membrane protein	213856..217401	Theileria parva strain Muguga	3499651
TpMuguga_03g00722	CDS	TpMuguga_03g00722	NW_876244.1	217618	219225	R	uncharacterized protein	complement(217618..219225)	Theileria parva strain Muguga	3499652
TpMuguga_03g00723	CDS	cct-2	NW_876244.1	220248	221900	D	T-complex 1 beta subunit protein	220248..221900	Theileria parva strain Muguga	3499653
TpMuguga_03g00724	CDS	ict1	NW_876244.1	222017	222794	R	RF-1 domain protein	complement(join(222017..222097,222128..222193,222223..222293,222326..222381,222457..222533,222600..222794))	Theileria parva strain Muguga	3499654
TpMuguga_03g00725	CDS	TpMuguga_03g00725	NW_876244.1	222940	223812	R	putative integral membrane protein	complement(222940..223812)	Theileria parva strain Muguga	3499655
TpMuguga_03g00726	CDS	TpMuguga_03g00726	NW_876244.1	224171	224569	R	putative integral membrane protein	complement(224171..224569)	Theileria parva strain Muguga	3499656
TpMuguga_03g00727	CDS	TpMuguga_03g00727	NW_876244.1	224859	225278	R	putative integral membrane protein	complement(224859..225278)	Theileria parva strain Muguga	3499657
TpMuguga_03g00728	CDS	TpMuguga_03g00728	NW_876244.1	225642	227548	R	uncharacterized protein	complement(join(225642..225794,225965..226119,226180..226896,226953..227006,227038..227548))	Theileria parva strain Muguga	3499658
TpMuguga_03g00729	CDS	TpMuguga_03g00729	NW_876244.1	229020	230282	D	CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B family protein	229020..230282	Theileria parva strain Muguga	3499659
TpMuguga_03g00730	CDS	GPD2	NW_876244.1	230813	232950	D	FAD dependent oxidoreductase family protein	join(230813..231023,231101..231436,231500..232118,232196..232443,232517..232950)	Theileria parva strain Muguga	3499660
TpMuguga_03g00731	CDS	TpMuguga_03g00731	NW_876244.1	233246	234046	R	uncharacterized protein	complement(233246..234046)	Theileria parva strain Muguga	3499661
TpMuguga_03g00732	CDS	LSM7	NW_876244.1	234213	234782	D	U6 snRNA-associated Sm-like protein LSm7	join(234213..234315,234410..234481,234522..234592,234714..234782)	Theileria parva strain Muguga	3499662
TpMuguga_03g00733	CDS	ZNF718	NW_876244.1	234779	235750	R	Zinc finger C2H2 type family protein	complement(join(234779..234907,234940..235047,235078..235116,235148..235212,235243..235380,235411..235597,235661..235750))	Theileria parva strain Muguga	3499663
TpMuguga_03g00734	CDS	Ciao1	NW_876244.1	235959	237413	D	WD domain G-beta repeat protein	join(235959..236168,236207..236401,236436..236619,236649..236745,236777..236892,236924..237064,237094..237176,237207..237269,237300..237413)	Theileria parva strain Muguga	3499664
TpMuguga_03g00735	CDS	MPC2	NW_876244.1	237640	238284	D	Mitochondrial pyruvate carrier 4	join(237640..237742,237861..237983,238024..238098,238202..238284)	Theileria parva strain Muguga	3499665
TpMuguga_03g00736	CDS	TpMuguga_03g00736	NW_876244.1	238391	238713	D	Tim10/DDP family zinc finger family protein	join(238391..238444,238501..238713)	Theileria parva strain Muguga	3499666
TpMuguga_03g00737	CDS	TpMuguga_03g00737	NW_876244.1	238909	241815	D	RNA recognition motif protein	238909..241815	Theileria parva strain Muguga	3499667
TpMuguga_03g02155	CDS	TpMuguga_03g02155	NW_876244.1	242253	244672	D	uncharacterized protein	join(242253..244232,244299..244451,244496..244672)	Theileria parva strain Muguga	3499669
TpMuguga_03g00740	CDS	TpMuguga_03g00740	NW_876244.1	245228	246688	D	putative integral membrane protein	245228..246688	Theileria parva strain Muguga	3499670
TpMuguga_03g00741	CDS	TpMuguga_03g00741	NW_876244.1	247242	249115	R	uncharacterized protein	complement(join(247242..247408,247439..247980,248031..249115))	Theileria parva strain Muguga	3499671
TpMuguga_03g00742	CDS	TpMuguga_03g00742	NW_876244.1	249640	250530	D	Uncharacterized protein At4g15545; uncharacterized protein	join(249640..249688,249730..249842,249908..250166,250196..250280,250311..250530)	Theileria parva strain Muguga	3499672
TpMuguga_03g00743	CDS	EB1C	NW_876244.1	250687	251673	R	Calponin homology (CH) domain protein	complement(250687..251673)	Theileria parva strain Muguga	3499673
TpMuguga_03g00744	CDS	rpl7	NW_876244.1	251815	252844	R	60S ribosomal protein L7-2	complement(join(251815..251870,251998..252228,252288..252771,252839..252844))	Theileria parva strain Muguga	3499674
TpMuguga_03g00745	CDS	RpS23	NW_876244.1	253405	254256	R	ribosomal protein S23 (S12)	complement(join(253405..253653,253932..254110,254247..254256))	Theileria parva strain Muguga	3499675
TpMuguga_03g00746	CDS	rpc2	NW_876244.1	254689	258651	R	RNA polymerase Rpb2 domain 6 family protein	complement(join(254689..255107,255187..256356,256419..256955,257043..258651))	Theileria parva strain Muguga	3499676
TpMuguga_03g00747	CDS	SNRNP200	NW_876244.1	259147	266281	D	Sec63 Brl domain protein	join(259147..259191,259297..259497,259547..265366,265455..265692,265764..265972,266033..266281)	Theileria parva strain Muguga	3499677
TpMuguga_03g00748	CDS	TpMuguga_03g00748	NW_876244.1	267371	269576	D	putative integral membrane protein	join(267371..269508,269534..269576)	Theileria parva strain Muguga	3499678
TpMuguga_03g00749	CDS	TpMuguga_03g00749	NW_876244.1	269687	272761	D	putative integral membrane protein	269687..272761	Theileria parva strain Muguga	3499679
TpMuguga_03g02035	CDS	TpMuguga_03g02035	NW_876244.1	272867	279087	R	PHD-zinc-finger like domain protein	complement(join(272867..273714,273785..273987,274112..279087))	Theileria parva strain Muguga	3499680
TpMuguga_03g00752	CDS	TpMuguga_03g00752	NW_876244.1	279840	280258	R	uncharacterized protein	complement(join(279840..279935,280193..280258))	Theileria parva strain Muguga	3499682
TpMuguga_03g00753	CDS	TpMuguga_03g00753	NW_876244.1	280945	282213	D	Rhomboid family protein	280945..282213	Theileria parva strain Muguga	3499683
TpMuguga_03g00754	CDS	TpMuguga_03g00754	NW_876244.1	282345	285048	R	uncharacterized protein	complement(join(282345..282490,282632..282803,282943..285048))	Theileria parva strain Muguga	3499684
TpMuguga_03g00755	CDS	RPL15	NW_876244.1	285452	286156	D	60S ribosomal protein L15-1	join(285452..285465,285556..286156)	Theileria parva strain Muguga	3499685
TpMuguga_03g00756	CDS	Copz2	NW_876244.1	286394	287220	D	Clathrin adaptor complex small chain family protein	join(286394..286496,286594..286668,286729..286885,286943..287020,287052..287139,287170..287220)	Theileria parva strain Muguga	3499686
TpMuguga_03g00757	CDS	TpMuguga_03g00757	NW_876244.1	287242	288111	D	AP2 domain protein	join(287242..287344,287432..287639,287717..287803,287862..287969,288009..288111)	Theileria parva strain Muguga	3499687
TpMuguga_03g00758	CDS	mqo	NW_876244.1	288232	289932	D	Malate:quinone oxidoreductase (Mqo) family protein	join(288232..288295,288333..288476,288524..288613,288643..288748,288822..288945,288979..289932)	Theileria parva strain Muguga	3499688
TpMuguga_03g02145	CDS	TpMuguga_03g02145	NW_876244.1	290032	292328	R	uncharacterized protein	complement(join(290032..290502,290534..290668,290715..292328))	Theileria parva strain Muguga	3499689
TpMuguga_03g00761	CDS	TpMuguga_03g00761	NW_876244.1	292754	293783	D	uncharacterized protein	join(292754..292756,292795..293064,293129..293209,293241..293484,293563..293783)	Theileria parva strain Muguga	3499691
TpMuguga_03g00762	CDS	snf12-2	NW_876244.1	293944	295409	R	SWI/SNF complex component SNF12-like protein	complement(join(293944..294042,294072..294161,294264..295409))	Theileria parva strain Muguga	3499692
TpMuguga_03g00763	CDS	TpMuguga_03g00763	NW_876244.1	295655	303124	R	uncharacterized protein	complement(295655..303124)	Theileria parva strain Muguga	3499693
TpMuguga_03g00764	CDS	TpMuguga_03g00764	NW_876244.1	303512	304505	R	uncharacterized protein	complement(join(303512..303628,303662..303757,303794..303862,303895..304010,304041..304129,304197..304286,304321..304505))	Theileria parva strain Muguga	3499694
TpMuguga_03g00765	CDS	slc39a1	NW_876244.1	305217	306454	D	ZIP Zinc transporter family protein	join(305217..305385,305514..305684,305721..305990,306051..306454)	Theileria parva strain Muguga	3499695
TpMuguga_03g00766	CDS	TpMuguga_03g00766	NW_876244.1	306620	307624	R	NUDIX domain protein	complement(join(306620..306820,306973..307110,307216..307359,307484..307624))	Theileria parva strain Muguga	3499696
TpMuguga_03g00767	CDS	TpMuguga_03g00767	NW_876244.1	316281	317917	D	uncharacterized protein	join(316281..316435,316507..316570,316603..316737,316768..316814,316861..316953,317023..317170,317203..317309,317369..317542,317611..317917)	Theileria parva strain Muguga	3499700
TpMuguga_03g00768	CDS	TpMuguga_03g00768	NW_876244.1	318018	319467	R	uncharacterized protein	complement(join(318018..318255,318310..318369,318410..318535,318568..318650,318706..318765,318802..318960,319020..319088,319185..319298,319336..319467))	Theileria parva strain Muguga	3499701
TpMuguga_03g00769	CDS	TpMuguga_03g00769	NW_876244.1	319636	320038	D	putative integral membrane protein	join(319636..319648,319688..319744,319776..319986,320017..320038)	Theileria parva strain Muguga	3499702
TpMuguga_03g00770	CDS	TpMuguga_03g00770	NW_876244.1	320149	321522	R	CAAX protease self-immunity family protein	complement(320149..321522)	Theileria parva strain Muguga	3499703
TpMuguga_03g02085	CDS	TpMuguga_03g02085	NW_876244.1	321758	323906	D	uncharacterized protein	join(321758..321863,321893..322088,322122..322187,322221..322368,322409..322759,322830..322991,323020..323126,323156..323204,323235..323260,323342..323454,323485..323593,323632..323835,323870..323906)	Theileria parva strain Muguga	3499704
TpMuguga_03g00773	CDS	purB	NW_876244.1	324092	325871	D	Lyase family protein	join(324092..324278,324311..324417,324541..324723,324754..324876,324910..325014,325048..325184,325215..325556,325646..325871)	Theileria parva strain Muguga	3499706
TpMuguga_03g00774	CDS	TpMuguga_03g00774	NW_876244.1	325926	326927	R	Ribosomal protein S9/S16 family protein	complement(join(325926..326014,326044..326207,326284..326339,326370..326471,326557..326745,326777..326860,326895..326927))	Theileria parva strain Muguga	3499707
TpMuguga_03g00775	CDS	rab1	NW_876244.1	327008	327852	R	small GTP-binding protein Rab1	complement(join(327008..327190,327225..327381,327449..327591,327632..327727,327748..327852))	Theileria parva strain Muguga	3499708
TpMuguga_03g00776	CDS	TpMuguga_03g00776	NW_876244.1	328025	329338	D	uncharacterized protein	join(328025..328198,328234..328294,328327..328455,328485..328569,328625..328811,328840..328891,328943..329010,329041..329124,329158..329237,329278..329338)	Theileria parva strain Muguga	3499709
TpMuguga_03g00777	CDS	TpMuguga_03g00777	NW_876244.1	329404	330503	D	uncharacterized protein	join(329404..329723,329761..329861,329897..329964,329998..330081,330121..330188,330220..330260,330290..330324,330355..330394,330427..330503)	Theileria parva strain Muguga	3499710
TpMuguga_03g00778	CDS	TpMuguga_03g00778	NW_876244.1	330582	331691	R	uncharacterized protein	complement(join(330582..330646,330680..330734,330765..330907,330961..331023,331053..331089,331121..331210,331242..331303,331422..331526,331571..331691))	Theileria parva strain Muguga	3499711
TpMuguga_03g00779	CDS	TpMuguga_03g00779	NW_876244.1	331847	332583	R	uncharacterized protein	complement(join(331847..332496,332532..332583))	Theileria parva strain Muguga	3499712
TpMuguga_03g00780	CDS	TpMuguga_03g00780	NW_876244.1	333180	333808	D	uncharacterized protein	join(333180..333359,333398..333471,333541..333592,333634..333678,333713..333737,333777..333808)	Theileria parva strain Muguga	3499713
TpMuguga_03g00781	CDS	TpMuguga_03g00781	NW_876244.1	334051	335096	D	uncharacterized protein	join(334051..334137,334221..334406,334515..334538,334569..334761,334833..335002,335034..335096)	Theileria parva strain Muguga	3499714
TpMuguga_03g00782	CDS	ESF1	NW_876244.1	335253	337044	D	NUC153 domain protein	join(335253..335427,335461..335561,335597..335797,335830..335860,335912..335966,335996..336271,336301..336412,336445..336617,336649..336742,336773..336844,336876..336956,336991..337044)	Theileria parva strain Muguga	3499715
TpMuguga_03g02010	CDS	TpMuguga_03g02010	NW_876244.1	337122	338769	D	Proteasome non-ATPase 26S subunit family protein	join(337122..337166,337199..337237,337279..337473,337504..337594,337631..337725,337756..337839,337873..338769)	Theileria parva strain Muguga	3499716
TpMuguga_03g00785	CDS	TpMuguga_03g00785	NW_876244.1	339405	344795	D	putative integral membrane protein	339405..344795	Theileria parva strain Muguga	3499718
TpMuguga_03g00786	CDS	Pnpla8	NW_876244.1	344938	348405	R	Patatin-like phospholipase family protein	complement(344938..348405)	Theileria parva strain Muguga	3499719
TpMuguga_03g00787	CDS	TIF3D1	NW_876244.1	348596	350561	R	Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) family protein	complement(join(348596..350000,350114..350325,350388..350561))	Theileria parva strain Muguga	3499720
TpMuguga_03g00788	CDS	Hdac4	NW_876244.1	350732	353434	R	Histone deacetylase domain protein	complement(350732..353434)	Theileria parva strain Muguga	3499721
TpMuguga_03g00789	CDS	POP1	NW_876244.1	353555	356499	R	Ribonucleases P/MRP protein subunit POP1 family protein	complement(join(353555..353601,353647..353733,353813..353893,353924..354400,354432..354637,354728..354865,354910..355526,355557..355651,355684..356140,356227..356499))	Theileria parva strain Muguga	3499722
TpMuguga_03g00790	CDS	RH39	NW_876244.1	356738	361970	D	DEAD/DEAH box helicase family protein	join(356738..356830,356865..361970)	Theileria parva strain Muguga	3499723
TpMuguga_03g00791	CDS	TpMuguga_03g00791	NW_876244.1	362178	363054	R	Snf7 family protein	complement(join(362178..362546,362643..362845,362970..363054))	Theileria parva strain Muguga	3499724
TpMuguga_03g00792	CDS	TpMuguga_03g00792	NW_876244.1	363160	363926	D	putative integral membrane protein	join(363160..363205,363240..363304,363344..363487,363520..363603,363637..363694,363760..363926)	Theileria parva strain Muguga	3499725
TpMuguga_03g00793	CDS	adat2	NW_876244.1	363975	364745	R	Cytidine and deoxycytidylate deaminase zinc-binding region family protein	complement(join(363975..364012,364043..364140,364193..364268,364348..364516,364549..364659,364689..364745))	Theileria parva strain Muguga	3499726
TpMuguga_03g00794	CDS	TpMuguga_03g00794	NW_876244.1	364876	367389	R	uncharacterized protein	complement(join(364876..364932,365000..366369,366399..367389))	Theileria parva strain Muguga	3499727
TpMuguga_03g00795	CDS	obg	NW_876244.1	367577	369114	D	50S ribosome-binding GTPase family protein	join(367577..367666,367780..367983,368048..368203,368244..368302,368332..368380,368412..368489,368538..368619,368654..368807,368839..368950,368982..369048,369080..369114)	Theileria parva strain Muguga	3499728
TpMuguga_03g02160	CDS	TpMuguga_03g02160	NW_876244.1	369175	371820	R	OST-HTH Associated domain protein	complement(join(369175..370154,370284..371820))	Theileria parva strain Muguga	3499729
TpMuguga_03g00798	CDS	TpMuguga_03g00798	NW_876244.1	373081	374350	D	MAC/Perforin domain protein	join(373081..373201,373261..373457,373537..373724,373783..374350)	Theileria parva strain Muguga	3499731
TpMuguga_03g02040	CDS	TpMuguga_03g02040	NW_876244.1	374554	376546	D	MAC/Perforin domain protein	join(374554..374569,374603..374772,374815..375247,375290..375705,375746..375897,375926..376049,376079..376166,376198..376277,376307..376382,376413..376546)	Theileria parva strain Muguga	3499732
TpMuguga_03g00801	CDS	TpMuguga_03g00801	NW_876244.1	376929	377992	D	MAC/Perforin domain protein	join(376929..377024,377072..377283,377316..377500,377553..377924,377955..377992)	Theileria parva strain Muguga	3499734
TpMuguga_03g00802	CDS	coq2	NW_876244.1	378031	379456	D	UbiA prenyltransferase family protein	join(378031..378577,378632..378698,378733..378847,378881..379035,379082..379169,379247..379456)	Theileria parva strain Muguga	3499735
TpMuguga_03g02025	CDS	TpMuguga_03g02025	NW_876244.1	379494	380106	R	putative integral membrane protein	complement(join(379494..379501,379608..380106))	Theileria parva strain Muguga	86047747
TpMuguga_03g00803	CDS	TpMuguga_03g00803	NW_876244.1	379736	380491	D	uncharacterized protein	379736..380491	Theileria parva strain Muguga	3499736
TpMuguga_03g00804	CDS	Sec11c	NW_876244.1	380667	381297	D	signal peptidase I	join(380667..380817,380897..381297)	Theileria parva strain Muguga	3499737
TpMuguga_03g00805	CDS	TpMuguga_03g00805	NW_876244.1	381359	382947	R	uncharacterized protein	complement(join(381359..381477,381507..381710,381795..382076,382144..382227,382261..382390,382422..382451,382497..382576,382609..382645,382678..382713,382747..382806,382891..382947))	Theileria parva strain Muguga	3499738
TpMuguga_03g00806	CDS	TpMuguga_03g00806	NW_876244.1	383022	383443	R	uncharacterized protein	complement(join(383022..383047,383080..383146,383219..383297,383331..383443))	Theileria parva strain Muguga	3499739
TpMuguga_03g00807	CDS	TpMuguga_03g00807	NW_876244.1	383583	383849	D	putative integral membrane protein	383583..383849	Theileria parva strain Muguga	3499740
TpMuguga_03g00808	CDS	samm50	NW_876244.1	383896	385767	R	Sorting and assembly machinery component 50-like protein	complement(join(383896..384071,384102..384157,384228..384354,384394..384550,384598..384681,384715..384829,384860..384918,384950..385114,385167..385259,385323..385475,385556..385644,385683..385767))	Theileria parva strain Muguga	3499741
TpMuguga_03g00809	CDS	PAB2	NW_876244.1	385912	386900	R	Proteasome subunit alpha type-2-B	complement(join(385912..386206,386301..386434,386499..386680,386789..386900))	Theileria parva strain Muguga	3499742
TpMuguga_03g00810	CDS	TpMuguga_03g00810	NW_876244.1	387021	388233	R	MAC/Perforin domain protein	complement(join(387021..387391,387423..387595,387652..387854,387903..388093,388125..388233))	Theileria parva strain Muguga	3499743
TpMuguga_03g00811	CDS	TpMuguga_03g00811	NW_876244.1	388593	390608	D	uncharacterized protein	388593..390608	Theileria parva strain Muguga	3499744
TpMuguga_03g00812	CDS	TpMuguga_03g00812	NW_876244.1	390628	391202	R	uncharacterized protein	complement(join(390628..390731,390761..391053,391111..391202))	Theileria parva strain Muguga	3499745
TpMuguga_03g02110	CDS	TpMuguga_03g02110	NW_876244.1	391712	395082	R	uncharacterized protein	complement(join(391712..391930,392007..392090,392144..392216,392260..392348,392378..392488,392546..392602,392631..392702,392812..392968,393028..393074,393105..393307,393337..393414,393479..393559,393593..393659,393715..393802,393861..393990,394115..394429,394461..394516,394546..394607,394644..394912,394968..395082))	Theileria parva strain Muguga	3499746
TpMuguga_03g00816	CDS	fusA1	NW_876244.1	395280	398427	R	translation elongation factor G	complement(join(395280..395384,395473..395877,396004..396245,396439..396789,397113..398427))	Theileria parva strain Muguga	3499749
TpMuguga_03g00817	CDS	TpMuguga_03g00817	NW_876244.1	398543	400408	R	uncharacterized protein	complement(join(398543..398814,399007..399558,399925..400408))	Theileria parva strain Muguga	3499750
TpMuguga_03g00818	CDS	TpMuguga_03g00818	NW_876244.1	400761	401337	D	uncharacterized protein	join(400761..400977,401062..401211,401306..401337)	Theileria parva strain Muguga	3499751
TpMuguga_03g00819	CDS	TpMuguga_03g00819	NW_876244.1	401562	402630	D	uncharacterized protein	join(401562..401619,401687..401812,402383..402487,402581..402630)	Theileria parva strain Muguga	3499752
TpMuguga_03g00820	CDS	TpMuguga_03g00820	NW_876244.1	402734	403501	D	uncharacterized protein	402734..403501	Theileria parva strain Muguga	3499753
TpMuguga_03g00821	CDS	nsa2	NW_876244.1	403603	405349	D	Ribosomal protein S8e family protein	join(403603..403673,403805..403924,404022..404127,404176..404244,404276..404333,404630..404708,404832..404974,405216..405349)	Theileria parva strain Muguga	3499754
TpMuguga_03g02090	CDS	TpMuguga_03g02090	NW_876244.1	405612	408642	D	uncharacterized protein	join(405612..407581,408384..408642)	Theileria parva strain Muguga	3499755
TpMuguga_03g02070	CDS	TpMuguga_03g02070	NW_876244.1	408972	409469	D	uncharacterized protein	408972..409469	Theileria parva strain Muguga	86047750
TpMuguga_03g00823	CDS	TpMuguga_03g00823	NW_876244.1	410498	413422	R	GINS complex family protein	complement(join(410498..410636,410761..410833,410891..410938,410969..411036,411089..411315,411642..411792,411949..412105,412285..412504,412656..412724,412938..413200,413332..413422))	Theileria parva strain Muguga	3499756
TpMuguga_03g00824	CDS	TpMuguga_03g00824	NW_876244.1	413832	415416	D	Sin3 associated polypeptide p18 (SAP18) family protein	join(413832..414564,414610..414972,415292..415416)	Theileria parva strain Muguga	3499757
TpMuguga_03g00825	CDS	TpMuguga_03g00825	NW_876244.1	415534	418164	D	uncharacterized protein	join(415534..415587,415838..417115,417337..417673,417749..418164)	Theileria parva strain Muguga	3499758
TpMuguga_03g00826	CDS	fcp1	NW_876244.1	418941	421537	R	NLI interacting factor-like phosphatase family protein	complement(join(418941..421262,421517..421537))	Theileria parva strain Muguga	3499759
TpMuguga_03g00827	CDS	TpMuguga_03g00827	NW_876244.1	422515	425236	D	uncharacterized protein	join(422515..423025,423219..425236)	Theileria parva strain Muguga	3499760
TpMuguga_03g00828	CDS	Supt5h	NW_876244.1	425590	429663	D	Transcription elongation factor SPT5	join(425590..425823,425999..426111,426757..426884,426990..427304,427640..429663)	Theileria parva strain Muguga	3499761
TpMuguga_03g00829	CDS	TpMuguga_03g00829	NW_876244.1	430469	431737	R	uncharacterized protein	complement(430469..431737)	Theileria parva strain Muguga	3499762
TpMuguga_03g00830	CDS	DBP2	NW_876244.1	432125	435987	R	DEAD/DEAH box helicase	complement(join(432125..432296,432820..433193,433651..434162,434635..434937,435303..435987))	Theileria parva strain Muguga	3499763
TpMuguga_03g00831	CDS	coq10b	NW_876244.1	436222	436898	R	Polyketide cyclase / dehydrase and lipid transport family protein	complement(join(436222..436455,436539..436694,436740..436898))	Theileria parva strain Muguga	3499764
TpMuguga_03g00832	CDS	TpMuguga_03g00832	NW_876244.1	437728	438318	D	uncharacterized protein	join(437728..437831,437878..437955,438300..438318)	Theileria parva strain Muguga	3499766
TpMuguga_03g00833	CDS	TpMuguga_03g00833	NW_876244.1	438315	439509	R	uncharacterized protein	complement(join(438315..438390,438423..438517,438606..438657,439154..439509))	Theileria parva strain Muguga	3499768
TpMuguga_03g00834	CDS	TpMuguga_03g00834	NW_876244.1	439690	442284	D	putative integral membrane protein	439690..442284	Theileria parva strain Muguga	3499769
TpMuguga_03g00835	CDS	TpMuguga_03g00835	NW_876244.1	442651	443703	R	uncharacterized protein	complement(442651..443703)	Theileria parva strain Muguga	3499770
TpMuguga_03g00836	CDS	TpMuguga_03g00836	NW_876244.1	444264	445166	R	Bucentaur or craniofacial development family protein	complement(join(444264..444500,444569..444620,444694..445166))	Theileria parva strain Muguga	3499771
TpMuguga_03g00837	CDS	TpMuguga_03g00837	NW_876244.1	445288	445521	R	Cytochrome C oxidase copper chaperone (COX17) family protein	complement(445288..445521)	Theileria parva strain Muguga	3499772
TpMuguga_03g00838	CDS	TpMuguga_03g00838	NW_876244.1	445955	450701	D	putative integral membrane protein	join(445955..446354,446500..446610,446960..447187,447291..447620,447739..447770,447800..448087,448147..448383,448599..448869,449071..449325,449446..449771,449812..449868,449910..450701)	Theileria parva strain Muguga	3499773
TpMuguga_03g00839	CDS	TpMuguga_03g00839	NW_876244.1	450755	451537	R	uncharacterized protein	complement(450755..451537)	Theileria parva strain Muguga	3499774
TpMuguga_03g00840	CDS	TpMuguga_03g00840	NW_876244.1	451873	454842	R	uncharacterized protein	complement(join(451873..452004,452254..452979,453621..453720,454016..454543,454715..454842))	Theileria parva strain Muguga	3499775
TpMuguga_03g00841	CDS	sae1	NW_876244.1	455049	456677	R	SUMO-activating enzyme subunit 1	complement(join(455049..455149,455201..455265,455296..455435,455575..455647,455678..455781,455964..456143,456254..456345,456395..456471,456523..456677))	Theileria parva strain Muguga	3499776
TpMuguga_03g02000	CDS	TpMuguga_03g02000	NW_876244.1	457010	457415	D	Ribosomal protein L41 family protein	join(457010..457081,457194..457253,457350..457415)	Theileria parva strain Muguga	86047744
TpMuguga_03g00842	CDS	ksg1	NW_876244.1	457407	459186	R	Protein kinase domain protein	complement(join(457407..458295,458538..458689,458913..459032,459094..459186))	Theileria parva strain Muguga	3499777
TpMuguga_03g00843	CDS	TpMuguga_03g00843	NW_876244.1	459366	459891	R	uncharacterized protein	complement(join(459366..459388,459451..459532,459637..459760,459791..459891))	Theileria parva strain Muguga	3499778
TpMuguga_03g00844	CDS	TpMuguga_03g00844	NW_876244.1	460613	461177	R	putative integral membrane protein	complement(join(460613..460727,460763..460825,460943..460984,461015..461073,461103..461177))	Theileria parva strain Muguga	3499779
TpMuguga_03g02130	CDS	NFYB	NW_876244.1	462058	463661	D	Histone-like transcription factor (CBF/NF-Y) and archaeal histone family protein	join(462058..462250,462506..463061,463136..463265,463488..463661)	Theileria parva strain Muguga	3499780
TpMuguga_03g02135	CDS	TpMuguga_03g02135	NW_876244.1	463750	464523	D	putative integral membrane protein	join(463750..463767,463842..463929,463987..464029,464060..464188,464250..464383,464414..464523)	Theileria parva strain Muguga	86047754
TpMuguga_03g00846	CDS	PIGK	NW_876244.1	464662	466196	D	GPI-anchor transamidase	join(464662..465127,465159..465359,465478..466196)	Theileria parva strain Muguga	3499781
TpMuguga_03g00847	CDS	TpMuguga_03g00847	NW_876244.1	466579	468740	D	uncharacterized protein	join(466579..466775,466889..467272,467318..467388,467423..467481,467511..467579,467609..467790,467820..467904,467934..468360,468415..468740)	Theileria parva strain Muguga	3499782
TpMuguga_03g00848	CDS	mrp	NW_876244.1	468836	469910	D	ParA/MinD ATPase like family protein	join(468836..469210,469240..469427,469458..469817,469847..469910)	Theileria parva strain Muguga	3499783
TpMuguga_03g00849	CDS	TpMuguga_03g00849	NW_876244.1	471314	472945	D	Tp1	471314..472945	Theileria parva strain Muguga	3499784
TpMuguga_03g00850	CDS	TpMuguga_03g00850	NW_876244.1	473234	474427	R	putative integral membrane protein	complement(473234..474427)	Theileria parva strain Muguga	3499785
TpMuguga_03g00851	CDS	TpMuguga_03g00851	NW_876244.1	475116	476033	R	Chromosome segregation protein Spc25 family protein	complement(join(475116..475243,475276..475371,475406..475504,475535..475681,475713..475778,475811..476033))	Theileria parva strain Muguga	3499786
TpMuguga_03g02150	CDS	TpMuguga_03g02150	NW_876244.1	476282	476981	D	Ran-interacting Mog1 family protein	join(476282..476355,476394..476546,476580..476666,476698..476816,476848..476981)	Theileria parva strain Muguga	86047755
TpMuguga_03g00852	CDS	sec61a	NW_876244.1	477070	479025	R	preprotein translocase subunit SecY	complement(join(477070..477250,477476..478364,478506..478785,478824..478891,479013..479025))	Theileria parva strain Muguga	3499787
TpMuguga_03g00853	CDS	VATE	NW_876244.1	479192	479932	D	ATP synthase (E/31 kDa) subunit family protein	join(479192..479194,479258..479932)	Theileria parva strain Muguga	3499788
TpMuguga_03g00854	CDS	TpMuguga_03g00854	NW_876244.1	479959	480661	R	AP2 domain protein	complement(join(479959..480202,480232..480389,480432..480523,480574..480661))	Theileria parva strain Muguga	3499789
TpMuguga_03g00855	CDS	TpMuguga_03g00855	NW_876244.1	480872	481433	R	putative integral membrane protein	complement(join(480872..481068,481157..481433))	Theileria parva strain Muguga	3499790
TpMuguga_03g00856	CDS	TpMuguga_03g00856	NW_876244.1	481684	483267	R	uncharacterized protein	complement(481684..483267)	Theileria parva strain Muguga	3499791
TpMuguga_03g00857	CDS	FPS1	NW_876244.1	484115	485551	D	Polyprenyl synthetase family protein	join(484115..484283,484313..484411,484450..484537,484628..484699,484757..484974,485004..485089,485119..485217,485249..485409,485440..485465,485496..485551)	Theileria parva strain Muguga	3499793
TpMuguga_03g00858	CDS	MBF1C	NW_876244.1	485570	486152	R	Multiprotein-bridging factor 1c	complement(join(485570..485668,485703..485871,485951..485996,486029..486152))	Theileria parva strain Muguga	3499794
TpMuguga_03g00859	CDS	TpMuguga_03g00859	NW_876244.1	486286	487378	R	Transcription initiation factor IIF beta subunit protein	complement(join(486286..486299,486338..486390,486464..486632,486691..486796,486832..486887,486917..486956,487012..487194,487229..487306,487343..487378))	Theileria parva strain Muguga	3499795
TpMuguga_03g00929	CDS	TpMuguga_03g00929	NW_876244.1	487568	488290	R	ADP-ribosylation factor family protein	complement(join(487568..487945,488052..488161,488203..488290))	Theileria parva strain Muguga	3499796
TpMuguga_03g00860	CDS	RPS5B	NW_876244.1	488950	489763	D	ribosomal protein S7	join(488950..489021,489109..489245,489360..489593,489625..489763)	Theileria parva strain Muguga	3499797
TpMuguga_03g00861	CDS	TpMuguga_03g00861	NW_876244.1	490031	494389	R	Tp20; p150 antigen	complement(490031..494389)	Theileria parva strain Muguga	3499798
TpMuguga_03g00862	CDS	TpMuguga_03g00862	NW_876244.1	494838	499178	R	putative integral membrane protein	complement(494838..499178)	Theileria parva strain Muguga	3499799
TpMuguga_03g00863	CDS	TpMuguga_03g00863	NW_876244.1	501371	507265	D	uncharacterized protein	501371..507265	Theileria parva strain Muguga	3499800
TpMuguga_03g00864	CDS	abcC6	NW_876244.1	508109	512701	R	ABC transporter family protein	complement(508109..512701)	Theileria parva strain Muguga	3499801
TpMuguga_03g00865	CDS	TpMuguga_03g00865	NW_876244.1	514470	516812	D	uncharacterized protein	514470..516812	Theileria parva strain Muguga	3499802
TpMuguga_03g00866	CDS	TpMuguga_03g00866	NW_876244.1	517136	518221	D	SVSP family protein	517136..518221	Theileria parva strain Muguga	3499803
TpMuguga_03g00867	CDS	TpMuguga_03g00867	NW_876244.1	518591	520150	D	putative integral membrane protein	518591..520150	Theileria parva strain Muguga	3499804
TpMuguga_03g00868	CDS	TpMuguga_03g00868	NW_876244.1	520522	522039	D	putative integral membrane protein	520522..522039	Theileria parva strain Muguga	3499805
TpMuguga_03g00869	CDS	TpMuguga_03g00869	NW_876244.1	522338	523576	D	SVSP family protein	join(522338..522836,522939..523576)	Theileria parva strain Muguga	3499806
TpMuguga_03g00870	CDS	TpMuguga_03g00870	NW_876244.1	523847	525538	D	SVSP family protein	523847..525538	Theileria parva strain Muguga	3499807
TpMuguga_03g00871	CDS	TpMuguga_03g00871	NW_876244.1	525762	527750	D	SVSP family protein	525762..527750	Theileria parva strain Muguga	3499808
TpMuguga_03g00872	CDS	TpMuguga_03g00872	NW_876244.1	527987	529492	D	SVSP family protein	join(527987..529223,529248..529297,529484..529492)	Theileria parva strain Muguga	3499809
TpMuguga_03g00873	CDS	TpMuguga_03g00873	NW_876244.1	529656	531188	D	SVSP family protein	529656..531188	Theileria parva strain Muguga	3499810
TpMuguga_03g00874	CDS	TpMuguga_03g00874	NW_876244.1	531420	533360	D	SVSP family protein	531420..533360	Theileria parva strain Muguga	3499811
TpMuguga_03g00875	CDS	TpMuguga_03g00875	NW_876244.1	533596	535486	D	SVSP family protein	join(533596..534600,534632..534854,535185..535486)	Theileria parva strain Muguga	3499812
TpMuguga_03g00876	CDS	TpMuguga_03g00876	NW_876244.1	535708	536220	D	SVSP family protein	join(535708..536150,536217..536220)	Theileria parva strain Muguga	3499813
TpMuguga_03g00877	CDS	TpMuguga_03g00877	NW_876244.1	536425	537890	D	SVSP family protein	join(536425..536947,537388..537890)	Theileria parva strain Muguga	3499814
TpMuguga_03g00878	CDS	TpMuguga_03g00878	NW_876244.1	538115	539644	D	SVSP family protein	538115..539644	Theileria parva strain Muguga	3499815
TpMuguga_03g00879	CDS	TpMuguga_03g00879	NW_876244.1	539876	541816	D	SVSP family protein	539876..541816	Theileria parva strain Muguga	3499816
TpMuguga_03g00880	CDS	TpMuguga_03g00880	NW_876244.1	542052	543942	D	SVSP family protein	join(542052..543056,543088..543517,543548..543942)	Theileria parva strain Muguga	3499817
TpMuguga_03g00881	CDS	TpMuguga_03g00881	NW_876244.1	544163	545869	D	SVSP family protein	544163..545869	Theileria parva strain Muguga	3499818
TpMuguga_03g00882	CDS	TpMuguga_03g00882	NW_876244.1	546102	547925	D	SVSP family protein	546102..547925	Theileria parva strain Muguga	3499819
TpMuguga_03g00883	CDS	TpMuguga_03g00883	NW_876244.1	548146	549759	D	SVSP family protein	548146..549759	Theileria parva strain Muguga	3499820
TpMuguga_03g00884	CDS	TpMuguga_03g00884	NW_876244.1	549979	551967	D	SVSP family protein	549979..551967	Theileria parva strain Muguga	3499821
TpMuguga_03g00885	CDS	TpMuguga_03g00885	NW_876244.1	552204	553649	D	SVSP family protein	552204..553649	Theileria parva strain Muguga	3499822
TpMuguga_03g00886	CDS	TpMuguga_03g00886	NW_876244.1	553842	555278	D	SVSP family protein	553842..555278	Theileria parva strain Muguga	3499823
TpMuguga_03g00887	CDS	TpMuguga_03g00887	NW_876244.1	555566	556963	D	SVSP family protein	555566..556963	Theileria parva strain Muguga	3499824
TpMuguga_03g00888	CDS	TpMuguga_03g00888	NW_876244.1	557244	558563	D	SVSP family protein	557244..558563	Theileria parva strain Muguga	3499825
TpMuguga_03g00889	CDS	TpMuguga_03g00889	NW_876244.1	558841	560115	D	SVSP family protein	558841..560115	Theileria parva strain Muguga	3499826
TpMuguga_03g00890	CDS	TpMuguga_03g00890	NW_876244.1	560419	561898	D	SVSP family protein	join(560419..560843,560980..561898)	Theileria parva strain Muguga	3499827
TpMuguga_03g00891	CDS	TpMuguga_03g00891	NW_876244.1	562140	562642	D	SVSP family protein	join(562140..562547,562589..562642)	Theileria parva strain Muguga	3499828
TpMuguga_03g00892	CDS	TpMuguga_03g00892	NW_876244.1	563696	565549	D	SVSP family protein	563696..565549	Theileria parva strain Muguga	3499829
TpMuguga_03g00930	CDS	TpMuguga_03g00930	NW_876244.1	566094	567398	D	uncharacterized protein	566094..567398	Theileria parva strain Muguga	3499830
TpMuguga_03g00905	CDS	TpMuguga_03g00905	NW_876243.1	146	580	D	uncharacterized protein	146..580	Theileria parva strain Muguga	3499532
TpMuguga_03g00906	CDS	TpMuguga_03g00906	NW_876243.1	1672	2427	D	uncharacterized protein	1672..2427	Theileria parva strain Muguga	3499533
TpMuguga_03g00907	CDS	TpMuguga_03g00907	NW_876243.1	3041	4636	D	uncharacterized protein	3041..4636	Theileria parva strain Muguga	3499534
TpMuguga_03g00908	CDS	TpMuguga_03g00908	NW_876243.1	6813	7559	D	uncharacterized protein	6813..7559	Theileria parva strain Muguga	3499535
TpMuguga_03g00909	CDS	TpMuguga_03g00909	NW_876243.1	8472	9215	D	uncharacterized protein	8472..9215	Theileria parva strain Muguga	3499536
TpMuguga_03g00910	CDS	TpMuguga_03g00910	NW_876243.1	11043	11789	D	uncharacterized protein	11043..11789	Theileria parva strain Muguga	3499537
TpMuguga_03g00911	CDS	TpMuguga_03g00911	NW_876243.1	12967	13710	D	uncharacterized protein	12967..13710	Theileria parva strain Muguga	3499538
TpMuguga_03g00912	CDS	TpMuguga_03g00912	NW_876243.1	14355	16361	D	uncharacterized protein	14355..16361	Theileria parva strain Muguga	3499539
TpMuguga_03g00913	CDS	TpMuguga_03g00913	NW_876243.1	17530	18273	D	uncharacterized protein	17530..18273	Theileria parva strain Muguga	3499540
TpMuguga_03g00914	CDS	TpMuguga_03g00914	NW_876243.1	20496	21242	D	uncharacterized protein	20496..21242	Theileria parva strain Muguga	3499541
TpMuguga_03g00915	CDS	TpMuguga_03g00915	NW_876243.1	21792	23840	D	uncharacterized protein	21792..23840	Theileria parva strain Muguga	3499542
TpMuguga_03g00916	CDS	TpMuguga_03g00916	NW_876243.1	23982	26195	D	uncharacterized protein	23982..26195	Theileria parva strain Muguga	3499543
TpMuguga_03g00917	CDS	TpMuguga_03g00917	NW_876243.1	27399	27935	D	uncharacterized protein	27399..27935	Theileria parva strain Muguga	3499544
TpMuguga_03g00918	CDS	TpMuguga_03g00918	NW_876243.1	29398	31215	R	uncharacterized protein	complement(29398..31215)	Theileria parva strain Muguga	3499545
TpMuguga_03g00919	CDS	TpMuguga_03g00919	NW_876243.1	32514	34106	R	uncharacterized protein	complement(32514..34106)	Theileria parva strain Muguga	3499546
TpMuguga_03g00920	CDS	TpMuguga_03g00920	NW_876243.1	34723	36723	R	uncharacterized protein	complement(34723..36723)	Theileria parva strain Muguga	3499547
TpMuguga_03g00921	CDS	TpMuguga_03g00921	NW_876243.1	37368	38111	R	uncharacterized protein	complement(37368..38111)	Theileria parva strain Muguga	3499548
TpMuguga_03g00922	CDS	TpMuguga_03g00922	NW_876243.1	40367	41110	R	uncharacterized protein	complement(40367..41110)	Theileria parva strain Muguga	3499549
TpMuguga_03g00923	CDS	TpMuguga_03g00923	NW_876242.1	425	1168	R	uncharacterized protein	complement(425..1168)	Theileria parva strain Muguga	3499527
TpMuguga_03g00924	CDS	TpMuguga_03g00924	NW_876242.1	2081	3691	R	uncharacterized protein	complement(2081..3691)	Theileria parva strain Muguga	3499528
TpMuguga_03g00925	CDS	TpMuguga_03g00925	NW_876242.1	4305	5909	R	uncharacterized protein	complement(4305..5909)	Theileria parva strain Muguga	3499529
TpMuguga_03g00926	CDS	TpMuguga_03g00926	NW_876242.1	6523	8736	R	uncharacterized protein	complement(6523..8736)	Theileria parva strain Muguga	3499530
TpMuguga_03g00927	CDS	TpMuguga_03g00927	NW_876242.1	8878	10926	R	uncharacterized protein	complement(8878..10926)	Theileria parva strain Muguga	3499531
TpMuguga_03g00928	CDS	TpMuguga_03g00928	NW_876242.1	11476	12222	R	uncharacterized protein	complement(11476..12222)	Theileria parva strain Muguga	3499526
TpMuguga_04g00001	CDS	TpMuguga_04g00001	NW_876247.1	2938	4527	R	uncharacterized protein	complement(2938..4527)	Theileria parva strain Muguga	3501404
TpMuguga_04g00002	CDS	TpMuguga_04g00002	NW_876247.1	5069	6487	R	SVSP family protein	complement(5069..6487)	Theileria parva strain Muguga	3501405
TpMuguga_04g02000	CDS	TpMuguga_04g02000	NW_876247.1	6794	7355	D	putative integral membrane protein	join(6794..6828,7044..7078,7249..7355)	Theileria parva strain Muguga	86047798
TpMuguga_04g02010	CDS	TpMuguga_04g02010	NW_876247.1	7647	7931	R	uncharacterized protein	complement(7647..7931)	Theileria parva strain Muguga	86047800
TpMuguga_04g00003	CDS	TpMuguga_04g00003	NW_876247.1	8500	10209	R	SVSP family protein	complement(join(8500..8681,8706..10209))	Theileria parva strain Muguga	3501406
TpMuguga_04g02005	CDS	TpMuguga_04g02005	NW_876247.1	10419	10988	R	SVSP family protein	complement(10419..10988)	Theileria parva strain Muguga	86047799
TpMuguga_04g02015	CDS	TpMuguga_04g02015	NW_876247.1	11119	12018	R	SVSP family protein	complement(11119..12018)	Theileria parva strain Muguga	3501407
TpMuguga_04g00005	CDS	TpMuguga_04g00005	NW_876247.1	12228	13850	R	SVSP family protein	complement(12228..13850)	Theileria parva strain Muguga	3501401
TpMuguga_04g00006	CDS	TpMuguga_04g00006	NW_876247.1	14074	15642	R	SVSP family protein	complement(14074..15642)	Theileria parva strain Muguga	3501402
TpMuguga_04g00007	CDS	TpMuguga_04g00007	NW_876247.1	15853	17262	R	SVSP family protein	complement(15853..17262)	Theileria parva strain Muguga	3501403
TpMuguga_04g00008	CDS	TpMuguga_04g00008	NW_876246.1	147	1565	R	SVSP family protein	complement(join(147..191,221..805,849..1565))	Theileria parva strain Muguga	3501005
TpMuguga_04g00923	CDS	TpMuguga_04g00923	NW_876246.1	1776	3185	R	SVSP family protein	complement(1776..3185)	Theileria parva strain Muguga	3501006
TpMuguga_04g00009	CDS	TpMuguga_04g00009	NW_876246.1	3365	5044	R	SVSP family protein	complement(3365..5044)	Theileria parva strain Muguga	3501007
TpMuguga_04g00010	CDS	TpMuguga_04g00010	NW_876246.1	5255	6691	R	SVSP family protein	complement(5255..6691)	Theileria parva strain Muguga	3501306
TpMuguga_04g00011	CDS	TpMuguga_04g00011	NW_876246.1	6902	7687	R	SVSP family protein	complement(6902..7687)	Theileria parva strain Muguga	3501307
TpMuguga_04g00012	CDS	TpMuguga_04g00012	NW_876246.1	8370	9689	R	uncharacterized protein	complement(8370..9689)	Theileria parva strain Muguga	3501308
TpMuguga_04g00013	CDS	TpMuguga_04g00013	NW_876246.1	10158	12041	R	SVSP family protein	complement(10158..12041)	Theileria parva strain Muguga	3501309
TpMuguga_04g00014	CDS	TpMuguga_04g00014	NW_876246.1	12308	14047	R	SVSP family protein	complement(12308..14047)	Theileria parva strain Muguga	3501310
TpMuguga_04g00015	CDS	TpMuguga_04g00015	NW_876246.1	14348	15874	R	SVSP family protein	complement(14348..15874)	Theileria parva strain Muguga	3501311
TpMuguga_04g00016	CDS	TpMuguga_04g00016	NW_876246.1	16194	17549	R	SVSP family protein	complement(16194..17549)	Theileria parva strain Muguga	3501312
TpMuguga_04g00017	CDS	TpMuguga_04g00017	NW_876246.1	17830	19023	R	SVSP family protein	complement(17830..19023)	Theileria parva strain Muguga	3501313
TpMuguga_04g00018	CDS	TpMuguga_04g00018	NW_876246.1	19156	20301	R	SVSP family protein	complement(19156..20301)	Theileria parva strain Muguga	3501314
TpMuguga_04g00019	CDS	TpMuguga_04g00019	NW_876246.1	20697	21776	R	SVSP family protein	complement(20697..21776)	Theileria parva strain Muguga	3501025
TpMuguga_04g00020	CDS	TpMuguga_04g00020	NW_876246.1	22290	24146	R	uncharacterized protein	complement(22290..24146)	Theileria parva strain Muguga	3501026
TpMuguga_04g00021	CDS	ABCC4	NW_876246.1	25519	30093	D	ABC transporter family protein	25519..30093	Theileria parva strain Muguga	3501027
TpMuguga_04g00022	CDS	TpMuguga_04g00022	NW_876246.1	30419	33718	R	uncharacterized protein	complement(30419..33718)	Theileria parva strain Muguga	3501028
TpMuguga_04g00023	CDS	TpMuguga_04g00023	NW_876246.1	34068	36077	R	uncharacterized protein	complement(34068..36077)	Theileria parva strain Muguga	3501029
TpMuguga_04g00024	CDS	TpMuguga_04g00024	NW_876246.1	36699	37598	R	putative integral membrane protein	complement(36699..37598)	Theileria parva strain Muguga	3501030
TpMuguga_04g02560	CDS	SODB	NW_876246.1	37657	38744	R	Iron/manganese superoxide dismutase	complement(join(37657..37781,37947..38075,38173..38358,38388..38432,38459..38549,38580..38744))	Theileria parva strain Muguga	3501031
TpMuguga_04g02555	CDS	TpMuguga_04g02555	NW_876246.1	38737	40137	R	uncharacterized protein	complement(join(38737..38790,38821..38876,38907..38958,38989..39176,39207..39290,39320..39446,39523..39586,39621..39742,39898..40034,40089..40137))	Theileria parva strain Muguga	86047843
TpMuguga_04g00026	CDS	mnmE	NW_876246.1	40275	42610	D	GTP-binding protein TrmE N-terminus family protein	join(40275..40529,40571..40691,40753..40849,40882..40951,41059..41124,41155..41342,41383..41438,41528..42298,42350..42401,42517..42610)	Theileria parva strain Muguga	3500625
TpMuguga_04g00027	CDS	ERCC6	NW_876246.1	42762	46064	R	SNF2 family protein	complement(join(42762..42862,42895..42925,42958..45491,45581..45800,45841..45918,46011..46064))	Theileria parva strain Muguga	3500626
TpMuguga_04g00028	CDS	TpMuguga_04g00028	NW_876246.1	46946	48634	D	uncharacterized protein	46946..48634	Theileria parva strain Muguga	3500627
TpMuguga_04g02425	CDS	TpMuguga_04g02425	NW_876246.1	49322	49549	D	uncharacterized protein	join(49322..49383,49453..49549)	Theileria parva strain Muguga	86047836
TpMuguga_04g00029	CDS	TpMuguga_04g00029	NW_876246.1	50131	52236	D	putative integral membrane protein	50131..52236	Theileria parva strain Muguga	3500628
TpMuguga_04g02345	CDS	TpMuguga_04g02345	NW_876246.1	53509	54135	D	uncharacterized protein	53509..54135	Theileria parva strain Muguga	86047830
TpMuguga_04g02375	CDS	TpMuguga_04g02375	NW_876246.1	54904	55923	D	uncharacterized protein	54904..55923	Theileria parva strain Muguga	3500629
TpMuguga_04g00031	CDS	RPT3	NW_876246.1	56074	57811	D	26S proteasome regulatory subunit 6B-like protein	join(56074..56175,56297..56487,56557..56689,56796..57055,57132..57463,57561..57645,57724..57811)	Theileria parva strain Muguga	3500630
TpMuguga_04g00032	CDS	RPL7	NW_876246.1	57899	58938	D	60S ribosomal protein L7	join(57899..58009,58048..58136,58278..58392,58474..58613,58643..58834,58875..58938)	Theileria parva strain Muguga	3500511
TpMuguga_04g00033	CDS	TpMuguga_04g00033	NW_876246.1	59024	61005	R	Adenylosuccinate synthetase family protein	complement(join(59024..59068,59100..59287,59437..59643,59731..59883,59975..60233,60300..60643,60833..60929,60967..61005))	Theileria parva strain Muguga	3500512
TpMuguga_04g00034	CDS	Kmt2c	NW_876246.1	61367	62566	D	PHD-finger family protein	join(61367..61424,61534..61651,61683..61749,61828..61938,62022..62102,62197..62362,62457..62566)	Theileria parva strain Muguga	3500513
TpMuguga_04g00035	CDS	U2AF65B	NW_876246.1	62750	64071	D	or RNP domain; RBD; RRM; RNA recognition motif family protein	join(62750..62814,62919..63049,63125..64071)	Theileria parva strain Muguga	3500514
TpMuguga_04g00036	CDS	TPX	NW_876246.1	64634	65322	D	Peroxiredoxin-1	join(64634..65083,65176..65322)	Theileria parva strain Muguga	3500515
TpMuguga_04g00037	CDS	TpMuguga_04g00037	NW_876246.1	65399	65806	R	GNL3L/Grn1 putative GTPase family protein	complement(join(65399..65538,65572..65635,65718..65755,65791..65806))	Theileria parva strain Muguga	3500516
TpMuguga_04g00038	CDS	TpMuguga_04g00038	NW_876246.1	65949	66903	R	uncharacterized protein	complement(join(65949..66014,66050..66226,66312..66441,66502..66608,66643..66671,66711..66740,66792..66903))	Theileria parva strain Muguga	3500575
TpMuguga_04g00039	CDS	TpMuguga_04g00039	NW_876246.1	66939	69614	R	T-cell immunomodulatory-like protein	complement(join(66939..67110,67192..67332,67413..67563,67616..67787,67883..68670,68780..69614))	Theileria parva strain Muguga	3500576
TpMuguga_04g00040	CDS	TpMuguga_04g00040	NW_876246.1	69926	70866	R	putative integral membrane protein	complement(join(69926..70009,70116..70151,70182..70236,70266..70399,70434..70520,70588..70686,70762..70866))	Theileria parva strain Muguga	3500577
TpMuguga_04g00041	CDS	TpMuguga_04g00041	NW_876246.1	70938	71925	D	uncharacterized protein	join(70938..71292,71328..71452,71544..71795,71830..71925)	Theileria parva strain Muguga	3500578
TpMuguga_04g02645	CDS	TpMuguga_04g02645	NW_876246.1	72086	73656	D	uncharacterized protein	join(72086..72103,72136..72205,72318..72445,72479..72572,72655..72725,72806..72847,72878..72939,73009..73306,73339..73404,73493..73567,73636..73656)	Theileria parva strain Muguga	3500579
TpMuguga_04g02640	CDS	tma20	NW_876246.1	73673	74619	D	Translation machinery-associated protein 20	join(73673..73753,73874..73953,74007..74128,74215..74348,74427..74494,74523..74619)	Theileria parva strain Muguga	3500945
TpMuguga_04g00044	CDS	TpMuguga_04g00044	NW_876246.1	74785	78307	R	Alpha/beta hydrolase family protein	complement(join(74785..74919,74981..75133,75338..78307))	Theileria parva strain Muguga	3500946
TpMuguga_04g00045	CDS	snf8	NW_876246.1	78678	79454	R	EAP30/Vps36 family protein	complement(join(78678..78733,78770..79454))	Theileria parva strain Muguga	3500947
TpMuguga_04g00046	CDS	TpMuguga_04g00046	NW_876246.1	79524	80125	R	Ribosomal protein L16p/L10e family protein	complement(join(79524..79750,79825..80125))	Theileria parva strain Muguga	3500948
TpMuguga_04g00048	CDS	TpMuguga_04g00048	NW_876246.1	81647	83020	D	Cytidylyltransferase family protein	81647..83020	Theileria parva strain Muguga	3500638
TpMuguga_04g00049	CDS	FD1	NW_876246.1	83201	83936	D	Ferredoxin-1	join(83201..83450,83560..83670,83764..83936)	Theileria parva strain Muguga	3500639
TpMuguga_04g00050	CDS	RPS15	NW_876246.1	83995	84640	R	ribosomal protein S19	complement(join(83995..84290,84371..84518,84638..84640))	Theileria parva strain Muguga	3500640
TpMuguga_04g00051	CDS	TpMuguga_04g00051	NW_876246.1	85086	86644	D	Tp18; polymorphic immunodominant molecule PIM	join(85086..86088,86144..86244,86306..86644)	Theileria parva strain Muguga	3500641
TpMuguga_04g00052	CDS	TpMuguga_04g00052	NW_876246.1	86828	87283	D	uncharacterized protein	join(86828..86969,87072..87283)	Theileria parva strain Muguga	3500642
TpMuguga_04g00053	CDS	TpMuguga_04g00053	NW_876246.1	87861	88463	D	putative integral membrane protein	87861..88463	Theileria parva strain Muguga	86047792
TpMuguga_04g00054	CDS	TpMuguga_04g00054	NW_876246.1	88585	90396	R	CBF/Mak21 family protein	complement(88585..90396)	Theileria parva strain Muguga	3501332
TpMuguga_04g00055	CDS	TpMuguga_04g00055	NW_876246.1	90592	91873	R	uncharacterized protein	complement(join(90592..90803,90836..91044,91089..91873))	Theileria parva strain Muguga	3501333
TpMuguga_04g00056	CDS	TpMuguga_04g00056	NW_876246.1	92171	92431	D	putative integral membrane protein	92171..92431	Theileria parva strain Muguga	86047793
TpMuguga_04g00057	CDS	MCM4	NW_876246.1	93024	95985	D	MCM2/3/5 family protein	join(93024..93379,93457..94345,94422..94746,94779..95498,95528..95985)	Theileria parva strain Muguga	3501335
TpMuguga_04g00058	CDS	TpMuguga_04g00058	NW_876246.1	100147	101532	R	uncharacterized protein	complement(100147..101532)	Theileria parva strain Muguga	3501336
TpMuguga_04g00059	CDS	TpMuguga_04g00059	NW_876246.1	102347	103332	R	or RNP domain; RBD; RRM; RNA recognition motif family protein	complement(join(102347..102494,102579..102698,102785..102881,102963..103041,103136..103267,103324..103332))	Theileria parva strain Muguga	3501337
TpMuguga_04g00060	CDS	TpMuguga_04g00060	NW_876246.1	103876	104802	R	Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27) family protein	complement(join(103876..103945,103984..104037,104094..104170,104297..104448,104561..104654,104695..104802))	Theileria parva strain Muguga	3501338
TpMuguga_04g00061	CDS	TXNDC9	NW_876246.1	105142	105903	D	Thioredoxin family protein	join(105142..105441,105504..105662,105737..105797,105830..105903)	Theileria parva strain Muguga	3501155
TpMuguga_04g00062	CDS	TRM10	NW_876246.1	105978	106580	R	tRNA (Guanine-1)-methyltransferase family protein	complement(105978..106580)	Theileria parva strain Muguga	3501156
TpMuguga_04g00063	CDS	METAP1	NW_876246.1	106677	108378	D	metallopeptidase family protein M24	join(106677..106826,106879..106934,106968..107142,107224..107396,107427..107468,107579..107803,107836..107926,108007..108061,108093..108194,108311..108378)	Theileria parva strain Muguga	3501157
TpMuguga_04g00064	CDS	TpMuguga_04g00064	NW_876246.1	108521	110040	D	uncharacterized protein	join(108521..109849,109921..110040)	Theileria parva strain Muguga	3501158
TpMuguga_04g00065	CDS	cid13	NW_876246.1	110346	111868	R	Nucleotidyltransferase domain protein	complement(join(110346..111019,111079..111868))	Theileria parva strain Muguga	3501159
TpMuguga_04g00066	CDS	CPN60	NW_876246.1	112390	114686	D	chaperonin GroL	join(112390..112834,112890..113038,113148..113481,113636..113940,114062..114145,114214..114466,114544..114686)	Theileria parva strain Muguga	3501160
TpMuguga_04g02400	CDS	TpMuguga_04g02400	NW_876246.1	115052	116603	D	putative integral membrane protein	join(115052..115172,115356..115670,115771..116603)	Theileria parva strain Muguga	86047834
TpMuguga_04g02395	CDS	TpMuguga_04g02395	NW_876246.1	116765	119704	D	Ribosomal protein S5 domain protein	join(116765..117027,117114..117198,117243..117335,117397..117460,117493..117599,117630..117743,117803..117879,117914..117945,117976..118070,118151..118417,118477..118617,118648..118963,119112..119704)	Theileria parva strain Muguga	3500847
TpMuguga_04g00068	CDS	TpMuguga_04g00068	NW_876246.1	119961	120869	R	putative integral membrane protein	complement(join(119961..120262,120357..120572,120686..120869))	Theileria parva strain Muguga	3500848
TpMuguga_04g00069	CDS	TpMuguga_04g00069	NW_876246.1	121161	122052	R	uncharacterized protein	complement(join(121161..121381,121505..121595,121628..121717,121768..122052))	Theileria parva strain Muguga	3500849
TpMuguga_04g00070	CDS	TpMuguga_04g00070	NW_876246.1	122284	122636	D	uncharacterized protein	join(122284..122430,122565..122636)	Theileria parva strain Muguga	3500850
TpMuguga_04g00071	CDS	H2B2	NW_876246.1	123238	123609	D	Core histone H2A/H2B/H3/H4 family protein	123238..123609	Theileria parva strain Muguga	3500851
TpMuguga_04g00072	CDS	MBD9	NW_876246.1	123838	126732	R	PHD-finger family protein	complement(123838..126732)	Theileria parva strain Muguga	3501113
TpMuguga_04g00073	CDS	TpMuguga_04g00073	NW_876246.1	127118	128257	R	uncharacterized protein	complement(127118..128257)	Theileria parva strain Muguga	3501114
TpMuguga_04g00074	CDS	rsmA	NW_876246.1	128412	130305	R	ribosomal RNA small subunit methyltransferase A	complement(join(128412..129269,129324..129406,129559..129651,129681..129763,129997..130229,130258..130305))	Theileria parva strain Muguga	3501115
TpMuguga_04g00075	CDS	TpMuguga_04g00075	NW_876246.1	130310	132595	R	uncharacterized protein	complement(join(130310..132369,132493..132595))	Theileria parva strain Muguga	3501116
TpMuguga_04g00076	CDS	TpMuguga_04g00076	NW_876246.1	133541	134259	D	putative integral membrane protein	join(133541..133607,133850..133992,134144..134211,134247..134259)	Theileria parva strain Muguga	3501117
TpMuguga_04g02500	CDS	TpMuguga_04g02500	NW_876246.1	134398	138036	R	WD domain G-beta repeat protein	complement(join(134398..134567,134849..135824,136428..136603,136726..137172,137235..137434,137548..137707,137811..137973,138028..138036))	Theileria parva strain Muguga	3501339
TpMuguga_04g00080	CDS	TpMuguga_04g00080	NW_876246.1	138373	140730	R	GDP dissociation inhibitor family protein	complement(138373..140730)	Theileria parva strain Muguga	3501340
TpMuguga_04g00081	CDS	TpMuguga_04g00081	NW_876246.1	141106	143913	D	putative integral membrane protein	141106..143913	Theileria parva strain Muguga	3501341
TpMuguga_04g00082	CDS	TpMuguga_04g00082	NW_876246.1	143944	144837	R	uncharacterized protein	complement(143944..144837)	Theileria parva strain Muguga	3501342
TpMuguga_04g00083	CDS	TpMuguga_04g00083	NW_876246.1	144930	145715	D	uncharacterized protein	144930..145715	Theileria parva strain Muguga	3501343
TpMuguga_04g00084	CDS	TpMuguga_04g00084	NW_876246.1	146307	148478	R	uncharacterized protein	complement(146307..148478)	Theileria parva strain Muguga	3501344
TpMuguga_04g00085	CDS	TpMuguga_04g00085	NW_876246.1	148916	149512	D	uncharacterized protein	148916..149512	Theileria parva strain Muguga	3501345
TpMuguga_04g00086	CDS	TpMuguga_04g00086	NW_876246.1	149689	150339	D	uncharacterized protein	149689..150339	Theileria parva strain Muguga	3501346
TpMuguga_04g00087	CDS	TpMuguga_04g00087	NW_876246.1	150435	151505	R	uncharacterized protein	complement(join(150435..150862,150914..151505))	Theileria parva strain Muguga	3501120
TpMuguga_04g00088	CDS	fft3	NW_876246.1	151977	155483	R	SNF2 family protein	complement(join(151977..153526,153933..154476,154753..154971,155233..155333,155411..155483))	Theileria parva strain Muguga	3501121
TpMuguga_04g00089	CDS	cct3	NW_876246.1	156128	159501	D	T-complex protein 1 subunit gamma	join(156128..156331,156565..156832,157155..157625,157923..158205,158603..158718,158810..158905,159175..159329,159397..159501)	Theileria parva strain Muguga	3501122
TpMuguga_04g02455	CDS	TpMuguga_04g02455	NW_876246.1	159498	160102	R	uncharacterized protein	complement(join(159498..159646,159934..160102))	Theileria parva strain Muguga	86047838
TpMuguga_04g02450	CDS	TpMuguga_04g02450	NW_876246.1	160189	163219	R	uncharacterized protein	complement(join(160189..160338,160371..160442,160502..160587,160830..160947,161087..161185,161216..161342,161412..161492,161982..162405,162639..162924,162997..163046,163114..163219))	Theileria parva strain Muguga	3501124
TpMuguga_04g00092	CDS	TpMuguga_04g00092	NW_876246.1	163331	163831	D	putative integral membrane protein	join(163331..163402,163455..163547,163730..163831)	Theileria parva strain Muguga	3501125
TpMuguga_04g00093	CDS	TpMuguga_04g00093	NW_876246.1	164641	167184	D	tubulin/FtsZ family GTPase domain protein	join(164641..164702,164819..164936,165103..165310,165644..165938,166183..166455,166815..167184)	Theileria parva strain Muguga	3500885
TpMuguga_04g00094	CDS	RpL32	NW_876246.1	167616	168141	D	60S ribosomal protein L32	join(167616..167702,167830..168141)	Theileria parva strain Muguga	3500886
TpMuguga_04g00095	CDS	TpMuguga_04g00095	NW_876246.1	168622	169290	R	uncharacterized protein	complement(168622..169290)	Theileria parva strain Muguga	3500887
TpMuguga_04g00096	CDS	TpMuguga_04g00096	NW_876246.1	169892	170758	R	uncharacterized protein	complement(169892..170758)	Theileria parva strain Muguga	3500888
TpMuguga_04g00097	CDS	TpMuguga_04g00097	NW_876246.1	171261	172184	R	uncharacterized protein	complement(171261..172184)	Theileria parva strain Muguga	3500889
TpMuguga_04g00098	CDS	TpMuguga_04g00098	NW_876246.1	172777	173583	R	SVSP family protein	complement(172777..173583)	Theileria parva strain Muguga	3500890
TpMuguga_04g00099	CDS	TpMuguga_04g00099	NW_876246.1	173708	174574	R	SVSP family protein	complement(173708..174574)	Theileria parva strain Muguga	3500690
TpMuguga_04g00100	CDS	TpMuguga_04g00100	NW_876246.1	175019	175840	R	uncharacterized protein	complement(175019..175840)	Theileria parva strain Muguga	3500691
TpMuguga_04g00101	CDS	TpMuguga_04g00101	NW_876246.1	176385	177464	R	uncharacterized protein	complement(176385..177464)	Theileria parva strain Muguga	3500692
TpMuguga_04g00102	CDS	TpMuguga_04g00102	NW_876246.1	177949	178677	R	uncharacterized protein	complement(177949..178677)	Theileria parva strain Muguga	3500693
TpMuguga_04g00103	CDS	TpMuguga_04g00103	NW_876246.1	179308	180162	R	uncharacterized protein	complement(179308..180162)	Theileria parva strain Muguga	3500694
TpMuguga_04g00104	CDS	TpMuguga_04g00104	NW_876246.1	180734	181208	R	uncharacterized protein	complement(join(180734..180828,180857..181208))	Theileria parva strain Muguga	3500695
TpMuguga_04g00105	CDS	TpMuguga_04g00105	NW_876246.1	181567	184316	R	Rab-GTPase-TBC domain protein	complement(join(181567..181614,182429..182701,183000..184316))	Theileria parva strain Muguga	3500696
TpMuguga_04g00106	CDS	TpMuguga_04g00106	NW_876246.1	184428	187777	R	Adaptin N terminal region family protein	complement(join(184428..184865,185042..185945,186177..186629,186848..187062,187173..187243,187338..187461,187539..187610,187706..187777))	Theileria parva strain Muguga	3500697
TpMuguga_04g00107	CDS	TpMuguga_04g00107	NW_876246.1	187872	189630	D	uncharacterized protein	join(187872..187965,188041..188144,188381..188493,188551..188620,188898..188977,189205..189280,189311..189347,189450..189509,189539..189630)	Theileria parva strain Muguga	3500814
TpMuguga_04g00108	CDS	Spase22-23	NW_876246.1	189834	190659	R	Signal peptidase subunit family protein	complement(join(189834..190178,190537..190659))	Theileria parva strain Muguga	3500815
TpMuguga_04g00109	CDS	TpMuguga_04g00109	NW_876246.1	190874	191545	D	Prefoldin subunit family protein	join(190874..191048,191364..191545)	Theileria parva strain Muguga	3500816
TpMuguga_04g00110	CDS	TpMuguga_04g00110	NW_876246.1	193204	193930	R	Bacterial DNA-binding family protein	complement(join(193204..193527,193751..193930))	Theileria parva strain Muguga	3500817
TpMuguga_04g00111	CDS	TpMuguga_04g00111	NW_876246.1	194458	196530	R	uncharacterized protein	complement(join(194458..194715,194961..195077,195180..195329,195550..195606,195638..195713,195761..195812,195850..195891,196141..196302,196377..196530))	Theileria parva strain Muguga	3500818
TpMuguga_04g00112	CDS	TpMuguga_04g00112	NW_876246.1	196669	198550	D	Cytidylyltransferase family protein	join(196669..197046,197261..197591,197805..198550)	Theileria parva strain Muguga	3501372
TpMuguga_04g00113	CDS	SAP9	NW_876246.1	199512	200300	D	AN1-like Zinc finger family protein	join(199512..199538,199791..200300)	Theileria parva strain Muguga	3501373
TpMuguga_04g00114	CDS	TpMuguga_04g00114	NW_876246.1	201013	201957	D	uncharacterized protein	join(201013..201140,201257..201386,201592..201957)	Theileria parva strain Muguga	3501374
TpMuguga_04g00115	CDS	TpMuguga_04g00115	NW_876246.1	202247	202957	R	uncharacterized protein	complement(202247..202957)	Theileria parva strain Muguga	3501375
TpMuguga_04g00116	CDS	TpMuguga_04g00116	NW_876246.1	203553	204749	R	putative integral membrane protein	complement(203553..204749)	Theileria parva strain Muguga	3501376
TpMuguga_04g00117	CDS	SAP9	NW_876246.1	205284	206664	R	WD domain G-beta repeat protein	complement(join(205284..205793,206062..206664))	Theileria parva strain Muguga	3501377
TpMuguga_04g00118	CDS	TpMuguga_04g00118	NW_876246.1	206772	209072	D	uncharacterized protein	join(206772..206855,207160..207288,207429..207506,207755..207949,208331..208471,208505..208593,208623..208732,208966..209072)	Theileria parva strain Muguga	3501378
TpMuguga_04g02385	CDS	TpMuguga_04g02385	NW_876246.1	209243	212565	R	Ring finger domain protein	complement(join(209243..209360,209554..210018,210361..210934,211431..212565))	Theileria parva strain Muguga	3500901
TpMuguga_04g00121	CDS	TpMuguga_04g00121	NW_876246.1	212627	213318	R	uncharacterized protein	complement(join(212627..212751,213009..213082,213173..213318))	Theileria parva strain Muguga	3500903
TpMuguga_04g00122	CDS	Melk	NW_876246.1	213446	215597	R	Protein kinase domain protein	complement(join(213446..214191,214495..214760,215224..215597))	Theileria parva strain Muguga	3500904
TpMuguga_04g00123	CDS	TpMuguga_04g00123	NW_876246.1	215862	216439	R	uncharacterized protein	complement(join(215862..215942,216308..216439))	Theileria parva strain Muguga	3500905
TpMuguga_04g02595	CDS	TpMuguga_04g02595	NW_876246.1	216611	217798	R	uncharacterized protein	complement(216611..217798)	Theileria parva strain Muguga	86047845
TpMuguga_04g02590	CDS	Ncl	NW_876246.1	217947	218870	R	Nucleolin domain protein	complement(join(217947..217958,218149..218312,218651..218713,218825..218870))	Theileria parva strain Muguga	3500906
TpMuguga_04g00125	CDS	rpl10a	NW_876246.1	219691	220659	D	60S ribosomal protein L10a	join(219691..219695,219759..219859,220112..220659)	Theileria parva strain Muguga	3501248
TpMuguga_04g00126	CDS	TpMuguga_04g00126	NW_876246.1	221580	223471	R	uncharacterized protein	complement(join(221580..223346,223412..223471))	Theileria parva strain Muguga	3501249
TpMuguga_04g00127	CDS	TpMuguga_04g00127	NW_876246.1	223731	225353	R	uncharacterized protein	complement(223731..225353)	Theileria parva strain Muguga	3501250
TpMuguga_04g02480	CDS	TpMuguga_04g02480	NW_876246.1	226577	226774	D	putative integral membrane protein	join(226577..226710,226741..226774)	Theileria parva strain Muguga	86047840
TpMuguga_04g00128	CDS	TpMuguga_04g00128	NW_876246.1	227326	229089	D	uncharacterized protein	227326..229089	Theileria parva strain Muguga	3501251
TpMuguga_04g00129	CDS	SSRP1	NW_876246.1	229550	232420	D	Structure-specific recognition protein (SSRP1) family protein	join(229550..229612,229758..229872,229986..230062,230136..230459,230806..231028,231202..231342,231374..231468,231572..231663,231696..231828,232056..232197,232392..232420)	Theileria parva strain Muguga	3501252
TpMuguga_04g02405	CDS	LCMT1	NW_876246.1	232540	233914	D	Leucine carboxyl methyltransferase family protein	join(232540..232607,232689..232774,232808..233085,233125..233189,233220..233283,233316..233369,233399..233446,233476..233531,233650..233740,233771..233914)	Theileria parva strain Muguga	3501254
TpMuguga_04g02020	CDS	Lcmt2	NW_876246.1	234173	235541	D	Leucine carboxyl methyltransferase family protein	join(234173..234225,234257..234342,234375..234652,234682..234746,234776..234839,234873..234932,234963..235010,235037..235098,235130..235217,235248..235541)	Theileria parva strain Muguga	3501212
TpMuguga_04g00134	CDS	Lcmt2	NW_876246.1	235819	237284	D	Leucine carboxyl methyltransferase family protein	join(235819..235880,235927..236012,236041..236309,236492..236620,236651..236710,236741..236788,236841..236902,236933..237026,237057..237284)	Theileria parva strain Muguga	3501213
TpMuguga_04g00135	CDS	TpMuguga_04g00135	NW_876246.1	237477	238994	D	Leucine carboxyl methyltransferase family protein	join(237477..237541,237585..237670,237702..237979,238067..238195,238260..238319,238424..238485,238535..238628,238680..238994)	Theileria parva strain Muguga	3501214
TpMuguga_04g00136	CDS	TpMuguga_04g00136	NW_876246.1	239378	240156	D	uncharacterized protein	join(239378..239382,239460..240156)	Theileria parva strain Muguga	3501215
TpMuguga_04g00137	CDS	TpMuguga_04g00137	NW_876246.1	240285	242352	R	Pumilio-family RNA binding repeat family protein	complement(join(240285..240964,241034..241282,241403..241538,241598..241629,241662..241768,241839..242113,242224..242352))	Theileria parva strain Muguga	3501020
TpMuguga_04g00138	CDS	spg21	NW_876246.1	242470	244095	D	Alpha/beta hydrolase family protein	join(242470..242497,242549..242787,242962..243164,243252..243473,243515..243640,243759..244095)	Theileria parva strain Muguga	3501021
TpMuguga_04g00139	CDS	iksA	NW_876246.1	244177	246057	R	Protein kinase domain protein	complement(join(244177..244302,244404..244702,244735..245233,245328..245820,245939..246057))	Theileria parva strain Muguga	3501022
TpMuguga_04g00140	CDS	TpMuguga_04g00140	NW_876246.1	246136	252408	R	C2 domain protein	complement(246136..252408)	Theileria parva strain Muguga	3501023
TpMuguga_04g00141	CDS	MTO1	NW_876246.1	252867	255730	R	Glucose inhibited division protein A family protein	complement(join(252867..253014,253097..253624,253656..253781,253828..253915,253945..254052,254105..254267,254297..254410,254504..254585,254617..254779,254808..254917,254949..255730))	Theileria parva strain Muguga	3501024
TpMuguga_04g00142	CDS	eIF1	NW_876246.1	255887	256210	R	Eukaryotic translation initiation factor eIF1	complement(255887..256210)	Theileria parva strain Muguga	3501013
TpMuguga_04g00143	CDS	TpMuguga_04g00143	NW_876246.1	257234	258000	D	Snf7 family protein	join(257234..257296,257354..257440,257470..257696,257740..257845,257878..258000)	Theileria parva strain Muguga	3501014
TpMuguga_04g02140	CDS	TpMuguga_04g02140	NW_876246.1	258049	258519	R	putative integral membrane protein	complement(258049..258519)	Theileria parva strain Muguga	86047814
TpMuguga_04g00144	CDS	TpMuguga_04g00144	NW_876246.1	259064	260176	D	uncharacterized protein	259064..260176	Theileria parva strain Muguga	3501015
TpMuguga_04g00145	CDS	TpMuguga_04g00145	NW_876246.1	260693	264607	R	uncharacterized protein	complement(260693..264607)	Theileria parva strain Muguga	3501016
TpMuguga_04g02025	CDS	TpMuguga_04g02025	NW_876246.1	264666	265083	R	uncharacterized protein	complement(join(264666..264832,264867..265083))	Theileria parva strain Muguga	86047801
TpMuguga_04g00146	CDS	TpMuguga_04g00146	NW_876246.1	265246	266517	D	uncharacterized protein	265246..266517	Theileria parva strain Muguga	3501017
TpMuguga_04g00147	CDS	exo1	NW_876246.1	266520	268250	R	XPG I-region family protein	complement(join(266520..267646,267676..267942,267976..268180,268230..268250))	Theileria parva strain Muguga	3501018
TpMuguga_04g00148	CDS	TpMuguga_04g00148	NW_876246.1	268324	269360	R	Zinc-finger of C2H2 type family protein	complement(join(268324..269092,269146..269360))	Theileria parva strain Muguga	3501019
TpMuguga_04g00149	CDS	TpMuguga_04g00149	NW_876246.1	269451	270901	D	uncharacterized protein	join(269451..269504,269539..269733,269775..270427,270490..270901)	Theileria parva strain Muguga	3500975
TpMuguga_04g00150	CDS	TpMuguga_04g00150	NW_876246.1	271183	271746	R	putative integral membrane protein	complement(271183..271746)	Theileria parva strain Muguga	3500976
TpMuguga_04g00151	CDS	SNRNP40	NW_876246.1	272087	273184	R	U5 small nuclear ribonucleoprotein 40 kDa protein	complement(join(272087..272175,272212..272554,272633..272847,272881..273184))	Theileria parva strain Muguga	3500977
TpMuguga_04g00152	CDS	RPT4B	NW_876246.1	273317	274874	R	26S proteasome subunit P45 family protein	complement(join(273317..273507,273595..273915,273994..274146,274180..274278,274312..274650,274730..274874))	Theileria parva strain Muguga	3500978
TpMuguga_04g00153	CDS	TpMuguga_04g00153	NW_876246.1	275255	282752	D	uncharacterized protein	join(275255..282446,282586..282752)	Theileria parva strain Muguga	3500979
TpMuguga_04g02115	CDS	TpMuguga_04g02115	NW_876246.1	282842	283273	R	Got1/Sft2-like family protein	complement(282842..283273)	Theileria parva strain Muguga	86047812
TpMuguga_04g00155	CDS	TpMuguga_04g00155	NW_876246.1	283359	284227	R	uncharacterized protein	complement(join(283359..283591,283630..283686,283778..283811,283841..284227))	Theileria parva strain Muguga	3500981
TpMuguga_04g00156	CDS	TpMuguga_04g00156	NW_876246.1	284927	286173	D	uncharacterized protein	join(284927..285719,285758..286173)	Theileria parva strain Muguga	3500677
TpMuguga_04g02695	CDS	TpMuguga_04g02695	NW_876246.1	286425	289223	D	putative integral membrane protein	join(286425..287917,288015..288379,288493..289223)	Theileria parva strain Muguga	86047853
TpMuguga_04g02690	CDS	TpMuguga_04g02690	NW_876246.1	289333	290198	D	Ribosome-binding factor A family protein	join(289333..289552,289646..289785,289881..289995,290047..290198)	Theileria parva strain Muguga	3500679
TpMuguga_04g02150	CDS	rbgA	NW_876246.1	290296	292152	R	50S ribosome-binding GTPase family protein	complement(join(290296..291614,291678..292152))	Theileria parva strain Muguga	3500680
TpMuguga_04g02290	CDS	TpMuguga_04g02290	NW_876246.1	292166	292586	R	putative integral membrane protein	complement(join(292166..292228,292316..292474,292536..292586))	Theileria parva strain Muguga	3500681
TpMuguga_04g00161	CDS	natA	NW_876246.1	292762	293497	R	N-terminal acetyltransferase complex ARD1 subunit-like protein	complement(join(292762..292843,292945..293044,293121..293218,293316..293497))	Theileria parva strain Muguga	3500682
TpMuguga_04g00162	CDS	rps20	NW_876246.1	293633	294243	R	ribosomal protein S10	complement(join(293633..293766,293846..293959,294141..294243))	Theileria parva strain Muguga	3500504
TpMuguga_04g00163	CDS	TpMuguga_04g00163	NW_876246.1	295069	295922	D	Inner membrane complex family protein	join(295069..295203,295431..295922)	Theileria parva strain Muguga	3500505
TpMuguga_04g00164	CDS	TpMuguga_04g00164	NW_876246.1	296484	298028	D	Tash protein PEST motif family protein	296484..298028	Theileria parva strain Muguga	3500506
TpMuguga_04g00165	CDS	TpMuguga_04g00165	NW_876246.1	298597	300801	R	Temperature dependent protein affecting M2 dsRNA replication family protein	complement(298597..300801)	Theileria parva strain Muguga	3500507
TpMuguga_04g00166	CDS	Eftud2	NW_876246.1	301468	305023	R	Elongation factor Tu GTP binding domain protein	complement(join(301468..301635,301783..301861,301952..302176,302247..302330,302435..303710,303769..305023))	Theileria parva strain Muguga	3500508
TpMuguga_04g00167	CDS	TpMuguga_04g00167	NW_876246.1	305417	306944	D	Concanavalin A-like lectin/glucanases superfamily protein	join(305417..305609,305686..305954,305988..306044,306079..306127,306160..306249,306311..306340,306373..306476,306544..306635,306669..306736,306832..306944)	Theileria parva strain Muguga	3500509
TpMuguga_04g02380	CDS	TpMuguga_04g02380	NW_876246.1	306972	307267	R	uncharacterized protein	complement(join(306972..307007,307069..307223,307255..307267))	Theileria parva strain Muguga	86047833
TpMuguga_04g00168	CDS	clpP	NW_876246.1	307393	308368	D	Clp protease family protein	join(307393..307572,307653..307836,307902..308060,308166..308368)	Theileria parva strain Muguga	3500510
TpMuguga_04g00169	CDS	TpMuguga_04g00169	NW_876246.1	308429	309240	R	Hsp20/alpha crystallin family protein	complement(join(308429..308727,308822..309047,309154..309240))	Theileria parva strain Muguga	3501315
TpMuguga_04g00170	CDS	TpMuguga_04g00170	NW_876246.1	309886	311495	D	meiotic recombinase Dmc1	join(309886..309984,310087..310179,310211..310358,310470..310618,310705..310866,310956..311184,311276..311402,311462..311495)	Theileria parva strain Muguga	3501316
TpMuguga_04g02210	CDS	TpMuguga_04g02210	NW_876246.1	311501	312257	R	Sedlin domain protein	complement(join(311501..311532,311602..311695,311761..311933,312027..312120,312207..312257))	Theileria parva strain Muguga	86047820
TpMuguga_04g00171	CDS	TpMuguga_04g00171	NW_876246.1	312384	313449	D	putative integral membrane protein	join(312384..312606,312687..312777,312811..313020,313053..313449)	Theileria parva strain Muguga	3501317
TpMuguga_04g00172	CDS	TpMuguga_04g00172	NW_876246.1	313862	316853	R	uncharacterized protein	complement(join(313862..314212,314318..314470,314619..316853))	Theileria parva strain Muguga	3501318
TpMuguga_04g00173	CDS	Senp1	NW_876246.1	316982	318417	R	Ulp1 protease catalytic domain protein	complement(join(316982..317532,317604..318288,318367..318417))	Theileria parva strain Muguga	3501319
TpMuguga_04g00174	CDS	clpB1	NW_876246.1	318908	323641	D	uncharacterized protein	join(318908..319202,319360..319733,319861..320025,320198..320471,320624..320892,320998..321131,321230..321393,321497..321597,321659..321871,321966..322047,322167..322409,322589..322748,322918..323192,323373..323641)	Theileria parva strain Muguga	3500671
TpMuguga_04g00175	CDS	TpMuguga_04g00175	NW_876246.1	323964	327759	R	AP2 domain protein	complement(join(323964..325249,325417..325983,326097..327759))	Theileria parva strain Muguga	3500672
TpMuguga_04g00177	CDS	GLRX5	NW_876246.1	329144	329868	R	uncharacterized protein	complement(join(329144..329356,329508..329606,329641..329696,329757..329868))	Theileria parva strain Muguga	3500673
TpMuguga_04g00176	CDS	nhp2	NW_876246.1	330175	330708	D	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein	330175..330708	Theileria parva strain Muguga	3500674
TpMuguga_04g00178	CDS	TpMuguga_04g00178	NW_876246.1	331203	332773	D	putative integral membrane protein	join(331203..332043,332175..332773)	Theileria parva strain Muguga	3500675
TpMuguga_04g00179	CDS	Ranbp2	NW_876246.1	332850	334041	R	uncharacterized protein	complement(join(332850..333272,333427..334041))	Theileria parva strain Muguga	3500676
TpMuguga_04g00180	CDS	TpMuguga_04g00180	NW_876246.1	334393	334629	R	uncharacterized protein	complement(334393..334629)	Theileria parva strain Muguga	3501032
TpMuguga_04g00181	CDS	TpMuguga_04g00181	NW_876246.1	334964	335167	R	uncharacterized protein	complement(334964..335167)	Theileria parva strain Muguga	3501033
TpMuguga_04g00182	CDS	SF3B3	NW_876246.1	336126	340367	R	Mono-functional DNA-alkylating methyl methanesulfonate N-term family protein	complement(join(336126..337009,337331..338185,338316..339941,340037..340367))	Theileria parva strain Muguga	3501034
TpMuguga_04g00183	CDS	TpMuguga_04g00183	NW_876246.1	340790	343550	D	uncharacterized protein	join(340790..340928,341029..341144,341191..341395,341473..341776,341844..341946,341978..342268,342343..342433,342487..342610,342683..342946,343070..343253,343356..343450,343484..343550)	Theileria parva strain Muguga	3501035
TpMuguga_04g00184	CDS	TpMuguga_04g00184	NW_876246.1	343635	345425	R	putative integral membrane protein	complement(343635..345425)	Theileria parva strain Muguga	3501036
TpMuguga_04g00185	CDS	TpMuguga_04g00185	NW_876246.1	345449	348415	R	uncharacterized protein	complement(join(345449..345863,346005..348415))	Theileria parva strain Muguga	3501037
TpMuguga_04g00186	CDS	TpMuguga_04g00186	NW_876246.1	348507	349256	R	uncharacterized protein	complement(348507..349256)	Theileria parva strain Muguga	3501038
TpMuguga_04g00187	CDS	pctA	NW_876246.1	349440	350747	D	cytidyltransferase-like domain protein	join(349440..349845,349967..350481,350511..350747)	Theileria parva strain Muguga	3501138
TpMuguga_04g00188	CDS	TpMuguga_04g00188	NW_876246.1	351010	351621	D	uncharacterized protein	351010..351621	Theileria parva strain Muguga	3501139
TpMuguga_04g00189	CDS	TpMuguga_04g00189	NW_876246.1	352471	352815	D	uncharacterized protein	352471..352815	Theileria parva strain Muguga	3501140
TpMuguga_04g02180	CDS	TpMuguga_04g02180	NW_876246.1	353640	354281	D	uncharacterized protein	353640..354281	Theileria parva strain Muguga	86047817
TpMuguga_04g02350	CDS	TpMuguga_04g02350	NW_876246.1	355035	355547	D	uncharacterized protein	355035..355547	Theileria parva strain Muguga	3501142
TpMuguga_04g00192	CDS	TpMuguga_04g00192	NW_876246.1	356287	356811	D	uncharacterized protein	356287..356811	Theileria parva strain Muguga	86047794
TpMuguga_04g00193	CDS	TpMuguga_04g00193	NW_876246.1	357453	358584	D	SF-assemblin/beta giardin family protein	join(357453..357681,357712..357959,357989..358192,358228..358584)	Theileria parva strain Muguga	3501144
TpMuguga_04g00194	CDS	WDR83	NW_876246.1	358658	359813	D	WD domain G-beta repeat protein	join(358658..358703,358740..358856,358893..359027,359071..359323,359354..359813)	Theileria parva strain Muguga	3501280
TpMuguga_04g00195	CDS	TpMuguga_04g00195	NW_876246.1	359836	360730	R	Nucleosome assembly protein (NAP) family protein	complement(join(359836..360027,360062..360109,360140..360730))	Theileria parva strain Muguga	3501281
TpMuguga_04g02065	CDS	TpMuguga_04g02065	NW_876246.1	360748	361970	R	uncharacterized protein	complement(join(360748..360800,360905..361970))	Theileria parva strain Muguga	86047805
TpMuguga_04g02230	CDS	TpMuguga_04g02230	NW_876246.1	362015	363656	R	uncharacterized protein	complement(join(362015..362057,362123..362236,362309..362387,362416..362568,362600..362653,362687..363205,363237..363479,363530..363656))	Theileria parva strain Muguga	3501282
TpMuguga_04g02570	CDS	Mettl13	NW_876246.1	363715	364628	D	Methyltransferase domain protein	join(363715..363943,363978..364082,364113..364204,364235..364296,364388..364451,364482..364628)	Theileria parva strain Muguga	3501284
TpMuguga_04g02565	CDS	TpMuguga_04g02565	NW_876246.1	364717	365499	D	uncharacterized protein	364717..365499	Theileria parva strain Muguga	3501285
TpMuguga_04g00200	CDS	TpMuguga_04g00200	NW_876246.1	365514	366278	R	hemolysin-III related family protein	complement(join(365514..365845,365877..365984,366017..366278))	Theileria parva strain Muguga	3501235
TpMuguga_04g00201	CDS	TpMuguga_04g00201	NW_876246.1	366577	367378	R	hemolysin-III related family protein	complement(join(366577..366941,366971..367078,367108..367378))	Theileria parva strain Muguga	3501236
TpMuguga_04g02275	CDS	TpMuguga_04g02275	NW_876246.1	368596	369344	R	hemolysin-III related family protein	complement(join(368596..368894,368924..369031,369062..369344))	Theileria parva strain Muguga	86047824
TpMuguga_04g00202	CDS	TpMuguga_04g00202	NW_876246.1	369683	370428	R	hemolysin-III related family protein	complement(join(369683..369993,370024..370134,370182..370428))	Theileria parva strain Muguga	3501237
TpMuguga_04g02625	CDS	kpna5	NW_876246.1	370682	372573	R	Importin subunit alpha-6	complement(join(370682..370804,370868..371064,371220..372573))	Theileria parva strain Muguga	3501238
TpMuguga_04g00205	CDS	TpMuguga_04g00205	NW_876246.1	372853	374733	D	uncharacterized protein	372853..374733	Theileria parva strain Muguga	3501240
TpMuguga_04g00206	CDS	TpMuguga_04g00206	NW_876246.1	374818	377069	R	uncharacterized protein	complement(join(374818..375197,375268..376382,376442..376751,376787..377069))	Theileria parva strain Muguga	3501241
TpMuguga_04g00207	CDS	TpMuguga_04g00207	NW_876246.1	377216	377860	R	uncharacterized protein	complement(join(377216..377233,377282..377860))	Theileria parva strain Muguga	3501126
TpMuguga_04g00208	CDS	TpMuguga_04g00208	NW_876246.1	377981	378863	D	3-oxo-5-alpha-steroid 4-dehydrogenase family protein	join(377981..378220,378257..378396,378422..378518,378550..378704,378734..378863)	Theileria parva strain Muguga	3501127
TpMuguga_04g00209	CDS	TpMuguga_04g00209	NW_876246.1	378890	384805	R	LCCL domain protein	complement(join(378890..378999,379030..379864,379901..379965,380026..380271,380340..380430,380463..380816,380883..380993,381025..381084,381116..381843,381921..382064,382097..382414,382445..382627,382687..383033,383100..383682,383714..383819,383871..384034,384066..384137,384169..384347,384379..384637,384715..384805))	Theileria parva strain Muguga	3501128
TpMuguga_04g00210	CDS	TpMuguga_04g00210	NW_876246.1	385467	386903	D	uncharacterized protein	join(385467..385561,385599..385980,386018..386245,386278..386323,386429..386608,386638..386749,386786..386903)	Theileria parva strain Muguga	3501129
TpMuguga_04g02260	CDS	TpMuguga_04g02260	NW_876246.1	387335	392218	D	C2 domain protein	join(387335..391067,391130..391370,391437..391881,391946..392071,392141..392218)	Theileria parva strain Muguga	3501131
TpMuguga_04g00213	CDS	ap1g1	NW_876246.1	392342	394928	R	adaptin subunit gamma	complement(join(392342..393960,394052..394928))	Theileria parva strain Muguga	3501101
TpMuguga_04g00214	CDS	TpMuguga_04g00214	NW_876246.1	395427	399542	D	uncharacterized protein	395427..399542	Theileria parva strain Muguga	3501102
TpMuguga_04g00215	CDS	TpMuguga_04g00215	NW_876246.1	399581	400953	R	uncharacterized protein	complement(join(399581..399732,399809..399907,399971..400082,400113..400165,400248..400373,400443..400595,400710..400805,400908..400953))	Theileria parva strain Muguga	3501103
TpMuguga_04g00216	CDS	TpMuguga_04g00216	NW_876246.1	401455	404938	D	Inorganic H+ pyrophosphatase family protein	join(401455..401574,401795..404938)	Theileria parva strain Muguga	3501104
TpMuguga_04g02175	CDS	TpMuguga_04g02175	NW_876246.1	404952	405639	D	YggU family protein	join(404952..405146,405180..405267,405359..405448,405509..405639)	Theileria parva strain Muguga	86047816
TpMuguga_04g00217	CDS	TpMuguga_04g00217	NW_876246.1	405723	406256	R	Thioredoxin	complement(join(405723..405741,405834..406029,406080..406142,406229..406256))	Theileria parva strain Muguga	3501105
TpMuguga_04g00218	CDS	Tnpo1	NW_876246.1	407628	410864	D	HEAT-like repeat family protein	join(407628..408534,408662..410017,410212..410864)	Theileria parva strain Muguga	3501106
TpMuguga_04g00219	CDS	acsA	NW_876246.1	411067	413464	R	acetate--CoA ligase	complement(join(411067..412212,412354..412617,412737..413216,413309..413464))	Theileria parva strain Muguga	3500858
TpMuguga_04g00220	CDS	TpMuguga_04g00220	NW_876246.1	415005	416284	D	Zinc finger C-x8-C-x5-C-x3-H type family protein	join(415005..415202,415395..415626,415659..416284)	Theileria parva strain Muguga	3500859
TpMuguga_04g00221	CDS	TpMuguga_04g00221	NW_876246.1	416541	417228	R	uncharacterized protein	complement(join(416541..417049,417189..417228))	Theileria parva strain Muguga	3500860
TpMuguga_04g00222	CDS	TpMuguga_04g00222	NW_876246.1	417534	418934	R	uncharacterized protein	complement(417534..418934)	Theileria parva strain Muguga	3500861
TpMuguga_04g02255	CDS	TpMuguga_04g02255	NW_876246.1	419534	421571	D	uncharacterized protein	join(419534..419676,419789..421571)	Theileria parva strain Muguga	3500862
TpMuguga_04g00225	CDS	MAGO2	NW_876246.1	421597	422221	R	Protein mago nashi-like protein 2	complement(join(421597..421611,421657..421934,422028..422146,422190..422221))	Theileria parva strain Muguga	3500864
TpMuguga_04g00226	CDS	TpMuguga_04g00226	NW_876246.1	422395	424776	R	uncharacterized protein	complement(422395..424776)	Theileria parva strain Muguga	3500836
TpMuguga_04g00227	CDS	TpMuguga_04g00227	NW_876246.1	425120	430787	D	Bromodomain protein	join(425120..428225,428348..428578,428722..430273,430358..430787)	Theileria parva strain Muguga	3500837
TpMuguga_04g00228	CDS	MSL10	NW_876246.1	431115	434426	D	Mechanosensitive ion channel family protein	join(431115..431399,431498..431632,431708..431870,431902..432035,432085..432356,432387..432436,432516..433028,433099..433595,433710..434426)	Theileria parva strain Muguga	3500838
TpMuguga_04g00229	CDS	TpMuguga_04g00229	NW_876246.1	434712	436364	D	Pescadillo N-terminus family protein	join(434712..435162,435213..435409,435454..435787,435818..435945,436009..436087,436118..436170,436203..436274,436305..436364)	Theileria parva strain Muguga	3500839
TpMuguga_04g00230	CDS	rad51-a	NW_876246.1	436483	437849	D	DNA repair protein Rad51	join(436483..436621,436665..436957,437058..437340,437470..437604,437668..437849)	Theileria parva strain Muguga	3500840
TpMuguga_04g00231	CDS	MSL10	NW_876246.1	437956	442208	R	Mechanosensitive ion channel family protein	complement(join(437956..438980,439068..439461,439538..439846,439942..440278,440347..440805,440869..441018,441089..441344,441388..441521,441575..441687,441720..441799,441831..441977,442018..442108,442152..442208))	Theileria parva strain Muguga	3500609
TpMuguga_04g00232	CDS	TpMuguga_04g00232	NW_876246.1	442435	445254	D	uncharacterized protein	join(442435..443182,443236..444086,444116..444201,444254..444317,444349..445254)	Theileria parva strain Muguga	3500610
TpMuguga_04g00233	CDS	IWS1	NW_876246.1	445433	446440	D	TFIIS helical bundle-like domain protein	445433..446440	Theileria parva strain Muguga	3500611
TpMuguga_04g00234	CDS	TpMuguga_04g00234	NW_876246.1	446736	447843	D	Nucleoporin FG repeat region family protein	join(446736..446883,446920..447752,447784..447843)	Theileria parva strain Muguga	3500612
TpMuguga_04g00235	CDS	ATJ6	NW_876246.1	447819	448985	R	DnaJ domain protein	complement(join(447819..447839,447965..448042,448072..448102,448132..448244,448275..448377,448414..448558,448591..448678,448842..448985))	Theileria parva strain Muguga	3500613
TpMuguga_04g00236	CDS	RPN8A	NW_876246.1	449140	450537	D	26S proteasome non-ATPase regulatory subunit 7-like protein	join(449140..449409,449542..449673,449769..449865,449897..449979,450123..450245,450346..450537)	Theileria parva strain Muguga	3500614
TpMuguga_04g00237	CDS	TpMuguga_04g00237	NW_876246.1	450590	451253	R	uncharacterized protein	complement(join(450590..450831,450934..451011,451046..451153,451187..451253))	Theileria parva strain Muguga	3500564
TpMuguga_04g00238	CDS	rpl-36	NW_876246.1	451451	451827	R	60S ribosomal protein L36	complement(join(451451..451749,451779..451827))	Theileria parva strain Muguga	3500565
TpMuguga_04g00239	CDS	bysl	NW_876246.1	452178	454165	R	Bystin family protein	complement(join(452178..452302,452520..452625,452879..453052,453210..453365,453462..453674,453710..453863,453939..454165))	Theileria parva strain Muguga	3500566
TpMuguga_04g00240	CDS	TpMuguga_04g00240	NW_876246.1	454697	455938	D	uncharacterized protein	join(454697..454714,454745..454819,454857..455595,455627..455811,455852..455938)	Theileria parva strain Muguga	3500567
TpMuguga_04g00241	CDS	eif4g	NW_876246.1	456098	460834	R	MIF4G domain protein	complement(join(456098..456260,456744..460834))	Theileria parva strain Muguga	3500568
TpMuguga_04g00242	CDS	prfB	NW_876246.1	462327	463979	D	RF-1 domain protein	join(462327..462508,462563..462660,462895..463326,463446..463564,463680..463979)	Theileria parva strain Muguga	3500569
TpMuguga_04g00243	CDS	TpMuguga_04g00243	NW_876246.1	464006	464787	R	uncharacterized protein	complement(join(464006..464155,464185..464266,464359..464596,464625..464787))	Theileria parva strain Muguga	3500593
TpMuguga_04g00244	CDS	TpMuguga_04g00244	NW_876246.1	465427	467693	R	Primase zinc finger family protein	complement(join(465427..465525,465737..466012,466093..466822,467089..467457,467590..467647,467678..467693))	Theileria parva strain Muguga	3500594
TpMuguga_04g00245	CDS	TpMuguga_04g00245	NW_876246.1	468705	471605	D	uncharacterized protein	468705..471605	Theileria parva strain Muguga	3500595
TpMuguga_04g00246	CDS	TpMuguga_04g00246	NW_876246.1	471654	473855	R	uncharacterized protein	complement(471654..473855)	Theileria parva strain Muguga	3500596
TpMuguga_04g00247	CDS	TpMuguga_04g00247	NW_876246.1	474322	476913	D	uncharacterized protein	474322..476913	Theileria parva strain Muguga	3500597
TpMuguga_04g00248	CDS	nol10	NW_876246.1	477079	479852	R	Nucleolar protein 10	complement(join(477079..477198,477311..477469,477573..477789,477893..478118,478296..478471,478571..478648,478678..478782,478961..479049,479224..479385,479511..479637,479704..479777,479820..479852))	Theileria parva strain Muguga	3500598
TpMuguga_04g02165	CDS	TBC1D5	NW_876246.1	480221	483219	D	Rab-GTPase-TBC domain protein	join(480221..481234,481474..481538,481570..481646,481702..481818,481919..482065,482873..483110,483141..483219)	Theileria parva strain Muguga	3501207
TpMuguga_04g02470	CDS	TpMuguga_04g02470	NW_876246.1	483404	484038	D	uncharacterized protein	join(483404..483649,483857..483921,483954..484038)	Theileria parva strain Muguga	86047839
TpMuguga_04g02465	CDS	sly1	NW_876246.1	484327	486722	D	Sec1 family protein	join(484327..485278,485437..485706,485839..486149,486339..486584,486645..486722)	Theileria parva strain Muguga	3501208
TpMuguga_04g00252	CDS	TpMuguga_04g00252	NW_876246.1	486875	488665	R	uncharacterized protein	complement(486875..488665)	Theileria parva strain Muguga	3501209
TpMuguga_04g00253	CDS	TpMuguga_04g00253	NW_876246.1	489530	491335	R	Elongation factor TS family protein	complement(join(489530..489703,489864..490013,490225..490901,490969..491335))	Theileria parva strain Muguga	3501210
TpMuguga_04g00254	CDS	TpMuguga_04g00254	NW_876246.1	491613	492586	D	uncharacterized protein	join(491613..491649,491780..491960,492056..492322,492430..492586)	Theileria parva strain Muguga	3500740
TpMuguga_04g00255	CDS	TpMuguga_04g00255	NW_876246.1	493064	495133	R	uncharacterized protein	complement(493064..495133)	Theileria parva strain Muguga	3500741
TpMuguga_04g00256	CDS	TpMuguga_04g00256	NW_876246.1	495675	497189	R	putative integral membrane protein	complement(495675..497189)	Theileria parva strain Muguga	3500742
TpMuguga_04g00257	CDS	TpMuguga_04g00257	NW_876246.1	498139	499304	D	uncharacterized protein	join(498139..498225,498293..498384,498416..498477,498601..498707,498740..498813,498849..498921,499095..499151,499233..499304)	Theileria parva strain Muguga	3500743
TpMuguga_04g00258	CDS	RRN3	NW_876246.1	499362	502667	R	RNA polymerase I specific transcription initiation factor RRN3 family protein	complement(join(499362..499496,499645..501161,501318..502495,502582..502667))	Theileria parva strain Muguga	3500744
TpMuguga_04g00259	CDS	TpMuguga_04g00259	NW_876246.1	503117	505294	D	uncharacterized protein	join(503117..503162,503193..503283,504186..504267,504344..504413,504443..504504,504534..504744,504777..504841,504873..504908,505037..505120,505150..505221,505253..505294)	Theileria parva strain Muguga	3500745
TpMuguga_04g00260	CDS	TpMuguga_04g00260	NW_876246.1	505323	508611	R	uncharacterized protein	complement(join(505323..505365,505431..505558,505684..505782,505844..505942,505993..508434,508486..508611))	Theileria parva strain Muguga	3500746
TpMuguga_04g00261	CDS	TpMuguga_04g00261	NW_876246.1	508963	510378	R	CAF1 family ribonuclease family protein	complement(join(508963..509065,509095..509174,509305..509370,509399..509465,509547..509585,509616..509693,509757..509975,510192..510274,510307..510378))	Theileria parva strain Muguga	3500819
TpMuguga_04g00262	CDS	TpMuguga_04g00262	NW_876246.1	510866	511315	R	uncharacterized protein	complement(join(510866..510926,511101..511315))	Theileria parva strain Muguga	3500820
TpMuguga_04g00263	CDS	TpMuguga_04g00263	NW_876246.1	512023	514917	D	uncharacterized protein	join(512023..512077,512108..512168,512286..514917)	Theileria parva strain Muguga	3500821
TpMuguga_04g00264	CDS	wdr26	NW_876246.1	515545	517715	R	WD domain G-beta repeat protein	complement(join(515545..516690,516839..516916,516993..517108,517276..517508,517621..517715))	Theileria parva strain Muguga	3500822
TpMuguga_04g00265	CDS	RH21	NW_876246.1	518149	521373	D	DEAD/DEAH box helicase family protein	join(518149..518367,518401..518526,518608..519001,519032..519150,519255..519434,519577..519665,519697..519813,519899..520018,520096..520300,520460..520761,520972..521159,521189..521373)	Theileria parva strain Muguga	3500823
TpMuguga_04g00266	CDS	rps24	NW_876246.1	522068	522475	D	40S ribosomal protein S24-1	522068..522475	Theileria parva strain Muguga	3500870
TpMuguga_04g00267	CDS	COX10	NW_876246.1	522514	523932	R	protoheme IX farnesyltransferase	complement(join(522514..522688,522773..522915,522995..523198,523283..523359,523391..523554,523644..523837,523870..523932))	Theileria parva strain Muguga	3500871
TpMuguga_04g00268	CDS	Eif3b	NW_876246.1	524741	527942	D	Eukaryotic translation initiation factor eIF2A family protein	join(524741..524774,524813..524944,524980..525069,525162..526067,526351..526466,526549..526696,526755..526852,526954..527091,527226..527350,527389..527680,527826..527942)	Theileria parva strain Muguga	3500872
TpMuguga_04g00269	CDS	TpMuguga_04g00269	NW_876246.1	527984	528958	R	p25-alpha family protein	complement(join(527984..528054,528084..528192,528327..528863,528902..528958))	Theileria parva strain Muguga	3500873
TpMuguga_04g00270	CDS	TpMuguga_04g00270	NW_876246.1	529400	531085	R	AP2 domain protein	complement(529400..531085)	Theileria parva strain Muguga	3500874
TpMuguga_04g00271	CDS	TpMuguga_04g00271	NW_876246.1	532093	532958	R	Nitric oxide synthase-interacting protein-like protein	complement(join(532093..532856,532889..532958))	Theileria parva strain Muguga	86047795
TpMuguga_04g00272	CDS	TpMuguga_04g00272	NW_876246.1	533274	535154	D	B-box zinc finger family protein	join(533274..533423,533517..533644,533674..533738,533772..533879,533913..534160,534226..534350,534381..534459,534492..534609,534649..535154)	Theileria parva strain Muguga	3501200
TpMuguga_04g00273	CDS	TpMuguga_04g00273	NW_876246.1	535271	536335	R	putative integral membrane protein	complement(535271..536335)	Theileria parva strain Muguga	3501201
TpMuguga_04g00274	CDS	TpMuguga_04g00274	NW_876246.1	537086	537340	R	putative bolA-like protein C8C9.11	complement(537086..537340)	Theileria parva strain Muguga	3501202
TpMuguga_04g00275	CDS	TpMuguga_04g00275	NW_876246.1	537665	544216	R	uncharacterized protein	complement(537665..544216)	Theileria parva strain Muguga	3501203
TpMuguga_04g00276	CDS	TpMuguga_04g00276	NW_876246.1	545003	545885	R	uncharacterized protein	complement(join(545003..545290,545322..545885))	Theileria parva strain Muguga	3501204
TpMuguga_04g00277	CDS	RPS14B	NW_876246.1	547430	547955	R	40S ribosomal protein S14-2	complement(join(547430..547535,547567..547744,547784..547955))	Theileria parva strain Muguga	3501205
TpMuguga_04g00278	CDS	infB	NW_876246.1	548572	549705	R	putative integral membrane protein	complement(join(548572..548703,548734..548826,548858..549016,549053..549124,549157..549705))	Theileria parva strain Muguga	3501062
TpMuguga_04g00279	CDS	infB	NW_876246.1	550260	551363	R	putative integral membrane protein	complement(join(550260..550391,550422..550514,550546..550704,550741..550812,550845..551363))	Theileria parva strain Muguga	3501063
TpMuguga_04g00280	CDS	infB	NW_876246.1	551921	555552	R	small GTP-binding domain protein	complement(join(551921..552052,552083..552175,552207..552365,552402..552473,552506..552670,552701..552784,552814..553009,553039..553670,553751..554133,554164..554317,554347..555552))	Theileria parva strain Muguga	3501064
TpMuguga_04g00281	CDS	TpMuguga_04g00281	NW_876246.1	555896	557257	R	uncharacterized protein	complement(join(555896..555990,556023..556111,556141..556193,556230..556284,556316..556407,556437..556505,556537..556683,556716..556773,556810..556916,556950..557022,557064..557257))	Theileria parva strain Muguga	3501065
TpMuguga_04g00282	CDS	RPL12C	NW_876246.1	557412	557944	R	60S ribosomal protein L12-3	complement(join(557412..557872,557908..557944))	Theileria parva strain Muguga	3501066
TpMuguga_04g00283	CDS	TpMuguga_04g00283	NW_876246.1	558318	559517	R	putative integral membrane protein	complement(join(558318..558581,558613..558735,558767..558865,558896..558982,559016..559165,559202..559332,559364..559517))	Theileria parva strain Muguga	3501067
TpMuguga_04g00284	CDS	TpMuguga_04g00284	NW_876246.1	559915	561614	R	RNA polymerase III subunit RPC82 helix-turn-helix domain protein	complement(join(559915..560029,560062..560150,560182..560370,560401..560500,560534..560597,560628..560862,560899..561063,561094..561176,561209..561614))	Theileria parva strain Muguga	3501074
TpMuguga_04g00285	CDS	nle1	NW_876246.1	561803	563718	R	WD domain G-beta repeat protein	complement(join(561803..561840,561883..562112,562142..562200,562256..562378,562411..562568,562602..562866,562901..562966,563002..563118,563150..563226,563256..563506,563540..563604,563698..563718))	Theileria parva strain Muguga	3501075
TpMuguga_04g00286	CDS	TpMuguga_04g00286	NW_876246.1	563820	565516	R	uncharacterized protein	complement(join(563820..563945,563980..564075,564108..564190,564224..564285,564317..564429,564464..564556,564586..564651,564683..565516))	Theileria parva strain Muguga	3501076
TpMuguga_04g00287	CDS	TpMuguga_04g00287	NW_876246.1	565930	569566	D	RPAP1-like domain protein	join(565930..566243,566275..569566)	Theileria parva strain Muguga	3501077
TpMuguga_04g00288	CDS	GBLP	NW_876246.1	570272	571456	D	guanine nucleotide-binding subunit beta-like protein	join(570272..570413,570526..570947,571025..571456)	Theileria parva strain Muguga	3501078
TpMuguga_04g00289	CDS	Ppp1r7	NW_876246.1	571581	572732	D	Leucine Rich repeats (2 copies) family protein	join(571581..571715,571755..571885,571914..572013,572043..572177,572207..572362,572394..572480,572509..572653,572686..572732)	Theileria parva strain Muguga	3500830
TpMuguga_04g00290	CDS	TpMuguga_04g00290	NW_876246.1	572829	574352	D	SpoU rRNA Methylase family protein	join(572829..573136,573237..573408,573437..573685,573820..574002,574092..574352)	Theileria parva strain Muguga	3500831
TpMuguga_04g00291	CDS	TpMuguga_04g00291	NW_876246.1	574411	575127	R	uncharacterized protein	complement(574411..575127)	Theileria parva strain Muguga	3500832
TpMuguga_04g00292	CDS	psmD13	NW_876246.1	576232	577795	D	PCI domain protein	join(576232..576493,576526..576614,576691..576831,576904..576967,576998..577089,577172..577312,577363..577619,577699..577795)	Theileria parva strain Muguga	3500833
TpMuguga_04g00293	CDS	TpMuguga_04g00293	NW_876246.1	577843	579096	R	Glycoprotease family protein	complement(join(577843..577964,578012..578152,578268..579096))	Theileria parva strain Muguga	3500834
TpMuguga_04g00294	CDS	TpMuguga_04g00294	NW_876246.1	579311	580489	R	uncharacterized protein	complement(579311..580489)	Theileria parva strain Muguga	3500835
TpMuguga_04g00295	CDS	DRP3B	NW_876246.1	580794	583402	D	Dynamin central region family protein	join(580794..580841,580956..581690,581760..582297,582381..583402)	Theileria parva strain Muguga	3500767
TpMuguga_04g00296	CDS	Cript	NW_876246.1	583490	583915	D	Cysteine-rich PDZ-binding protein	join(583490..583553,583585..583642,583730..583804,583837..583915)	Theileria parva strain Muguga	3500768
TpMuguga_04g00297	CDS	TpMuguga_04g00297	NW_876246.1	584436	587219	D	coatomer subunit gamma	584436..587219	Theileria parva strain Muguga	3500769
TpMuguga_04g00298	CDS	TpMuguga_04g00298	NW_876246.1	587441	587844	D	uncharacterized protein	join(587441..587561,587656..587718,587753..587844)	Theileria parva strain Muguga	3500770
TpMuguga_04g02200	CDS	TpMuguga_04g02200	NW_876246.1	587885	588445	R	uncharacterized protein	complement(587885..588445)	Theileria parva strain Muguga	86047819
TpMuguga_04g00299	CDS	ccdc124-a	NW_876246.1	588541	589626	R	Coiled-coil domain-containing protein 124-A	complement(join(588541..588579,588625..588720,588792..588856,588972..589074,589140..589229,589298..589405,589471..589626))	Theileria parva strain Muguga	3500771
TpMuguga_04g00300	CDS	PAT02	NW_876246.1	590297	591694	D	DHHC palmitoyltransferase family protein	590297..591694	Theileria parva strain Muguga	3500772
TpMuguga_04g00301	CDS	TpMuguga_04g00301	NW_876246.1	591762	592404	R	Iron-binding zinc finger CDGSH type family protein	complement(join(591762..591853,591887..592049,592116..592217,592336..592404))	Theileria parva strain Muguga	3500773
TpMuguga_04g00302	CDS	CDC73	NW_876246.1	592626	594362	R	RNA pol II accessory factor Cdc73 family protein	complement(join(592626..592751,592872..592935,593010..593232,593308..593466,593558..594362))	Theileria parva strain Muguga	3500644
TpMuguga_04g00303	CDS	ndx-4	NW_876246.1	594593	595299	D	bis(5'-nucleosyl)-tetraphosphatase (Asymmetrical)	join(594593..594728,594871..594977,595039..595151,595200..595299)	Theileria parva strain Muguga	3500645
TpMuguga_04g00304	CDS	Lsm2	NW_876246.1	595346	595775	R	U6 snRNA-associated Sm-like protein LSm2	complement(join(595346..595483,595573..595737,595773..595775))	Theileria parva strain Muguga	3500646
TpMuguga_04g00305	CDS	TRAP	NW_876246.1	596489	599714	D	von Willebrand factor type A domain protein	join(596489..596552,596749..599202,599265..599345,599425..599494,599588..599714)	Theileria parva strain Muguga	3500647
TpMuguga_04g02315	CDS	TpMuguga_04g02315	NW_876246.1	600254	600829	D	uncharacterized protein	600254..600829	Theileria parva strain Muguga	86047827
TpMuguga_04g02550	CDS	TRAP	NW_876246.1	601234	602531	D	von Willebrand factor type A domain protein	join(601234..602110,602225..602318,602390..602531)	Theileria parva strain Muguga	3500648
TpMuguga_04g00307	CDS	TpMuguga_04g00307	NW_876246.1	602579	603650	D	uncharacterized protein	join(602579..602917,602962..603198,603261..603650)	Theileria parva strain Muguga	3500649
TpMuguga_04g00308	CDS	TpMuguga_04g00308	NW_876246.1	603713	604297	R	C-terminal duplication domain of Friend of PRMT1 family protein	complement(join(603713..603811,603881..604098,604162..604297))	Theileria parva strain Muguga	3500528
TpMuguga_04g00309	CDS	RPS9B	NW_876246.1	604625	605346	R	ribosomal protein S4	complement(join(604625..604974,605043..605196,605284..605346))	Theileria parva strain Muguga	3500529
TpMuguga_04g00310	CDS	TpMuguga_04g00310	NW_876246.1	605825	607201	R	uncharacterized protein	complement(605825..607201)	Theileria parva strain Muguga	3500530
TpMuguga_04g02205	CDS	SPT16	NW_876246.1	607499	611680	R	FACT complex subunit (SPT16/CDC68) family protein	complement(join(607499..607888,608051..608294,608372..608722,608806..609010,609072..609333,609478..609694,609757..610038,610101..610318,610377..610568,610633..610809,610871..611011,611093..611202,611282..611370,611511..611680))	Theileria parva strain Muguga	3500531
TpMuguga_04g00313	CDS	SRSF1	NW_876246.1	612280	613269	D	or RNP domain; RBD; RRM; RNA recognition motif family protein	join(612280..612597,612724..612904,612995..613269)	Theileria parva strain Muguga	3500533
TpMuguga_04g00314	CDS	TpMuguga_04g00314	NW_876246.1	613444	614160	D	uncharacterized protein	613444..614160	Theileria parva strain Muguga	3500478
TpMuguga_04g00315	CDS	psmB1	NW_876246.1	614196	615215	R	Proteasome subunit beta type-1	complement(join(614196..614269,614307..614415,614446..614552,614617..614758,614851..614920,615025..615132,615169..615215))	Theileria parva strain Muguga	3500479
TpMuguga_04g00316	CDS	CYCU4-2	NW_876246.1	615497	617056	R	uncharacterized protein	complement(615497..617056)	Theileria parva strain Muguga	3500480
TpMuguga_04g00317	CDS	VAP	NW_876246.1	618954	619751	D	V-type ATPase subunit C	join(618954..619026,619111..619269,619431..619510,619563..619751)	Theileria parva strain Muguga	3500481
TpMuguga_04g02295	CDS	RBM25	NW_876246.1	620020	622648	R	PWI domain protein	complement(join(620020..621156,621282..621434,621591..621967,622028..622147,622260..622319,622382..622472,622598..622648))	Theileria parva strain Muguga	3500483
TpMuguga_04g00320	CDS	PTRHD1	NW_876246.1	623002	623444	D	Peptidyl-tRNA hydrolase PTH2 family protein	join(623002..623114,623180..623444)	Theileria parva strain Muguga	3500467
TpMuguga_04g00321	CDS	HIST2H3D	NW_876246.1	623698	624108	R	histone H3.2	complement(623698..624108)	Theileria parva strain Muguga	3500468
TpMuguga_04g00322	CDS	TpMuguga_04g00322	NW_876246.1	625232	625615	D	histone H2A	625232..625615	Theileria parva strain Muguga	3500469
TpMuguga_04g00323	CDS	GTF3C3	NW_876246.1	625917	629677	D	Tetratricopeptide repeat family protein	join(625917..625966,626151..626303,626415..626850,626964..627667,627731..628134,628271..628462,628511..628694,628847..629051,629128..629267,629299..629527,629585..629677)	Theileria parva strain Muguga	3500470
TpMuguga_04g00324	CDS	TpMuguga_04g00324	NW_876246.1	629803	631228	D	Ribosomal protein L19 family protein	join(629803..630210,630249..630330,630396..630517,630622..630745,630813..630951,631027..631072,631121..631228)	Theileria parva strain Muguga	3500471
TpMuguga_04g00325	CDS	slu7	NW_876246.1	631277	632719	R	Pre-mRNA splicing Prp18-interacting factor family protein	complement(join(631277..631415,631488..631711,631790..632024,632095..632485,632545..632719))	Theileria parva strain Muguga	3500472
TpMuguga_04g00326	CDS	Zdhhc20	NW_876246.1	633477	634570	D	DHHC palmitoyltransferase family protein	join(633477..633573,633604..633731,633819..634081,634133..634288,634354..634570)	Theileria parva strain Muguga	3500603
TpMuguga_04g00327	CDS	TpMuguga_04g00327	NW_876246.1	634770	636560	R	uncharacterized protein	complement(join(634770..635302,635408..636041,636138..636213,636280..636560))	Theileria parva strain Muguga	3500604
TpMuguga_04g00328	CDS	TpMuguga_04g00328	NW_876246.1	636658	639096	R	uncharacterized protein	complement(636658..639096)	Theileria parva strain Muguga	3500605
TpMuguga_04g00329	CDS	ywiE	NW_876246.1	639550	641329	D	PLD-like domain protein	join(639550..639675,639705..639792,639834..639997,640095..640532,640593..640763,640827..640954,640986..641173,641202..641329)	Theileria parva strain Muguga	3500606
TpMuguga_04g02715	CDS	TpMuguga_04g02715	NW_876246.1	641498	642468	R	uncharacterized protein	complement(join(641498..641932,641962..642006,642034..642195,642227..642293,642344..642468))	Theileria parva strain Muguga	3500607
TpMuguga_04g02195	CDS	TpMuguga_04g02195	NW_876246.1	642449	644320	R	uncharacterized protein	complement(join(642449..643907,643938..643996,644027..644320))	Theileria parva strain Muguga	3500608
TpMuguga_04g02080	CDS	TpMuguga_04g02080	NW_876246.1	644327	646060	R	putative coatomer subunit delta	complement(join(644327..644416,644494..644814,644940..645083,645114..645190,645221..645353,645384..645719,645755..645900,645934..646060))	Theileria parva strain Muguga	3500729
TpMuguga_04g00334	CDS	POLR1B	NW_876246.1	646393	650464	D	DNA-directed RNA polymerase subunit beta	join(646393..646564,646599..646838,646895..647093,647129..647402,647432..647626,647659..647809,647840..649642,649730..650019,650050..650351,650383..650464)	Theileria parva strain Muguga	3500730
TpMuguga_04g02045	CDS	TpMuguga_04g02045	NW_876246.1	650505	652067	D	MAC/Perforin domain protein	join(650505..650724,650755..650954,651009..651217,651247..651422,651456..651883,651915..652067)	Theileria parva strain Muguga	3500731
TpMuguga_04g02240	CDS	TpMuguga_04g02240	NW_876246.1	652067	652678	D	uncharacterized protein	join(652067..652210,652241..652402,652453..652525,652554..652678)	Theileria parva strain Muguga	3500732
TpMuguga_04g00337	CDS	TpMuguga_04g00337	NW_876246.1	652797	654803	R	MAC/Perforin domain protein	complement(join(652797..652940,652970..653058,653088..653190,653238..653355,653398..653537,653567..653985,654047..654228,654258..654335,654366..654493,654523..654722,654755..654803))	Theileria parva strain Muguga	3500852
TpMuguga_04g00338	CDS	TpMuguga_04g00338	NW_876246.1	655356	656224	D	Mitochondrial 39-S ribosomal protein L47 (MRP-L47) family protein	join(655356..655434,655473..655687,655717..655809,655847..655923,655953..656059,656091..656224)	Theileria parva strain Muguga	3500853
TpMuguga_04g00339	CDS	TpMuguga_04g00339	NW_876246.1	656260	658226	R	uncharacterized protein	complement(join(656260..657824,657857..658226))	Theileria parva strain Muguga	3500854
TpMuguga_04g00340	CDS	RPB2	NW_876246.1	658766	663101	R	DNA-directed RNA polymerase II subunit 2	complement(join(658766..659196,659239..659376,659468..659923,659989..660135,660167..660658,660735..661118,661153..661269,661367..661756,661819..662022,662083..662630,662663..662774,662869..663003,663041..663101))	Theileria parva strain Muguga	3500855
TpMuguga_04g00341	CDS	TpMuguga_04g00341	NW_876246.1	663359	664072	D	putative integral membrane protein	663359..664072	Theileria parva strain Muguga	3500856
TpMuguga_04g00342	CDS	TpMuguga_04g00342	NW_876246.1	664309	665407	D	VIT family protein	join(664309..664343,664407..664510,664545..664725,664758..664875,664906..664984,665086..665249,665297..665407)	Theileria parva strain Muguga	3500857
TpMuguga_04g00343	CDS	LZTR1	NW_876246.1	665991	667735	D	Kelch motif family protein	join(665991..667002,667098..667735)	Theileria parva strain Muguga	3500912
TpMuguga_04g00344	CDS	TpMuguga_04g00344	NW_876246.1	668048	671719	D	uncharacterized protein	668048..671719	Theileria parva strain Muguga	3500913
TpMuguga_04g00345	CDS	TpMuguga_04g00345	NW_876246.1	671838	674558	D	RAP domain protein	join(671838..671897,671928..672226,672310..672524,672558..672846,672898..673050,673160..673322,673363..673458,673491..673801,673833..674089,674201..674424,674457..674558)	Theileria parva strain Muguga	3500914
TpMuguga_04g00346	CDS	TpMuguga_04g00346	NW_876246.1	674612	675379	R	uncharacterized protein	complement(674612..675379)	Theileria parva strain Muguga	3500915
TpMuguga_04g00347	CDS	TpMuguga_04g00347	NW_876246.1	675768	676244	D	Ubiquinol-cytochrome C reductase hinge family protein	join(675768..675914,676062..676178,676212..676244)	Theileria parva strain Muguga	3500916
TpMuguga_04g00348	CDS	PRPF3	NW_876246.1	676417	678596	R	pre-mRNA processing factor 3 (PRP3) family protein	complement(join(676417..676682,676767..676923,676967..677332,677365..677505,677598..677951,677983..678332,678385..678508,678540..678596))	Theileria parva strain Muguga	3500917
TpMuguga_04g00349	CDS	hormad1	NW_876246.1	678993	680121	D	HORMA domain protein	join(678993..679229,679279..679428,679458..679628,679687..679976,680011..680064,680097..680121)	Theileria parva strain Muguga	3500956
TpMuguga_04g00350	CDS	gar1	NW_876246.1	680147	680876	R	Gar1/Naf1 RNA binding region family protein	complement(join(680147..680407,680492..680643,680695..680733,680804..680876))	Theileria parva strain Muguga	3500957
TpMuguga_04g00351	CDS	rlmE	NW_876246.1	681084	682010	D	FtsJ-like methyltransferase family protein	join(681084..681179,681213..681404,681448..681540,681573..681671,681747..681859,681890..682010)	Theileria parva strain Muguga	3500958
TpMuguga_04g00352	CDS	TpMuguga_04g00352	NW_876246.1	682129	685122	R	putative integral membrane protein	complement(682129..685122)	Theileria parva strain Muguga	3500959
TpMuguga_04g00353	CDS	TpMuguga_04g00353	NW_876246.1	685670	687103	R	uncharacterized protein	complement(685670..687103)	Theileria parva strain Muguga	3500960
TpMuguga_04g00354	CDS	TpMuguga_04g00354	NW_876246.1	687399	693862	D	putative integral membrane protein	join(687399..692695,692761..693862)	Theileria parva strain Muguga	3500961
TpMuguga_04g02060	CDS	TpMuguga_04g02060	NW_876246.1	693988	696313	D	uncharacterized protein	join(693988..695292,695336..695375,695416..695829,695900..696196,696228..696313)	Theileria parva strain Muguga	3500963
TpMuguga_04g00357	CDS	TpMuguga_04g00357	NW_876246.1	696401	698050	R	RING-variant domain protein	complement(join(696401..697060,697128..697822,697903..698050))	Theileria parva strain Muguga	3500964
TpMuguga_04g00358	CDS	snrpd3	NW_876246.1	698995	699468	D	Small nuclear ribonucleoprotein Sm D3 domain protein	join(698995..699090,699175..699255,699289..699468)	Theileria parva strain Muguga	3500965
TpMuguga_04g00359	CDS	TpMuguga_04g00359	NW_876246.1	699890	703039	D	uncharacterized protein	699890..703039	Theileria parva strain Muguga	3500966
TpMuguga_04g00360	CDS	MFAP1	NW_876246.1	703254	704778	D	Splicing factor Prp19-binding domain protein	join(703254..703382,703451..703571,703637..703725,703756..704214,704246..704320,704354..704705,704738..704778)	Theileria parva strain Muguga	3500967
TpMuguga_04g00361	CDS	TpMuguga_04g00361	NW_876246.1	704825	706213	R	uncharacterized protein	complement(join(704825..704974,705006..705116,705167..705523,705556..705670,705742..705872,705913..706062,706100..706213))	Theileria parva strain Muguga	3501045
TpMuguga_04g00362	CDS	gad-1	NW_876246.1	706408	708144	D	WD domain G-beta repeat protein	706408..708144	Theileria parva strain Muguga	3501046
TpMuguga_04g00363	CDS	XPO7	NW_876246.1	708706	712395	D	Importin-beta domain protein	join(708706..709260,709351..710119,710191..710667,710825..712395)	Theileria parva strain Muguga	3501047
TpMuguga_04g00364	CDS	TpMuguga_04g00364	NW_876246.1	712587	716349	R	DSHCT (NUC185) domain protein	complement(join(712587..712751,712804..712866,712897..712998,713071..713394,713499..713830,713873..714149,714203..714478,714574..714732,714768..714890,714961..716349))	Theileria parva strain Muguga	3501048
TpMuguga_04g00365	CDS	prepl	NW_876246.1	716527	718886	R	Prolyl oligopeptidase family protein	complement(join(716527..717110,717167..718886))	Theileria parva strain Muguga	3501049
TpMuguga_04g00366	CDS	PAA1	NW_876246.1	719286	720403	D	Proteasome subunit alpha type-6-B	join(719286..719361,719395..719507,719569..719650,719748..719903,719968..720050,720083..720403)	Theileria parva strain Muguga	3501050
TpMuguga_04g00367	CDS	YARS	NW_876246.1	720512	722045	R	Tyrosine--tRNA ligase domain protein	complement(join(720512..720577,720609..720742,720773..720908,720940..721078,721108..721266,721305..721394,721429..721496,721554..722045))	Theileria parva strain Muguga	3501161
TpMuguga_04g00368	CDS	RPN10	NW_876246.1	722223	723364	R	26S proteasome non-ATPase regulatory subunit 4-like protein	complement(join(722223..722267,722300..722577,722656..722868,722917..722980,723011..723364))	Theileria parva strain Muguga	3501162
TpMuguga_04g00369	CDS	XRN3	NW_876246.1	723837	726745	D	XRN 5'-3' exonuclease N-terminus family protein	join(723837..724049,724082..724184,724218..726745)	Theileria parva strain Muguga	3501163
TpMuguga_04g02085	CDS	TpMuguga_04g02085	NW_876246.1	726804	727148	D	STOP family protein	726804..727148	Theileria parva strain Muguga	86047807
TpMuguga_04g00370	CDS	ncapd2	NW_876246.1	727475	732655	D	non-SMC mitotic condensation complex subunit 1 family protein	727475..732655	Theileria parva strain Muguga	3501164
TpMuguga_04g00371	CDS	TpMuguga_04g00371	NW_876246.1	732846	733581	D	uncharacterized protein	join(732846..732932,732964..733272,733360..733581)	Theileria parva strain Muguga	3501165
TpMuguga_04g00372	CDS	TpMuguga_04g00372	NW_876246.1	733670	735469	R	uncharacterized protein	complement(733670..735469)	Theileria parva strain Muguga	3501166
TpMuguga_04g00373	CDS	TpMuguga_04g00373	NW_876246.1	736080	737945	D	Thioredoxin-like family protein	join(736080..736673,736782..737774,737844..737945)	Theileria parva strain Muguga	3501286
TpMuguga_04g00374	CDS	TBC1D22B	NW_876246.1	737986	739511	R	uncharacterized protein	complement(join(737986..738034,738101..738477,738538..738644,738703..738760,738790..738915,739023..739076,739108..739185,739216..739298,739367..739511))	Theileria parva strain Muguga	3501287
TpMuguga_04g00375	CDS	TpMuguga_04g00375	NW_876246.1	739734	740654	D	uncharacterized protein	739734..740654	Theileria parva strain Muguga	3501288
TpMuguga_04g02675	CDS	TpMuguga_04g02675	NW_876246.1	740697	746013	R	WD domain G-beta repeat protein	complement(join(740697..740783,740850..740951,740983..741068,741160..741332,741401..741550,741614..741759,741842..742137,742231..742318,742351..746013))	Theileria parva strain Muguga	3501289
TpMuguga_04g00379	CDS	TpMuguga_04g00379	NW_876246.1	746859	747502	D	uncharacterized protein	join(746859..746924,746951..747165,747199..747502)	Theileria parva strain Muguga	3501168
TpMuguga_04g00380	CDS	rfc5	NW_876246.1	747529	748647	R	DNA polymerase III delta subunit family protein	complement(join(747529..748424,748500..748647))	Theileria parva strain Muguga	3501169
TpMuguga_04g00381	CDS	TpMuguga_04g00381	NW_876246.1	748983	750474	D	ATPase family associated with various cellular activities (AAA) family protein	join(748983..749016,749081..749176,749207..749241,749291..749380,749431..750474)	Theileria parva strain Muguga	3501170
TpMuguga_04g00382	CDS	TpMuguga_04g00382	NW_876246.1	750537	752003	D	uncharacterized protein	750537..752003	Theileria parva strain Muguga	3501171
TpMuguga_04g00383	CDS	GPD	NW_876246.1	752115	753134	R	Glyceraldehyde-3-phosphate dehydrogenase	complement(752115..753134)	Theileria parva strain Muguga	3501172
TpMuguga_04g00384	CDS	CYC1	NW_876246.1	753724	755057	R	cytochrome c1 domain protein	complement(join(753724..754839,754983..755057))	Theileria parva strain Muguga	3501173
TpMuguga_04g00385	CDS	Zmat2	NW_876246.1	755767	756546	D	Zinc-finger of C2H2 type family protein	755767..756546	Theileria parva strain Muguga	3501174
TpMuguga_04g00386	CDS	SYP41	NW_876246.1	756591	757865	R	SNARE domain protein	complement(join(756591..756620,756675..756827,756888..756965,757070..757156,757230..757627,757727..757865))	Theileria parva strain Muguga	3501194
TpMuguga_04g00388	CDS	rpl16c	NW_876246.1	758070	758895	R	ribosomal protein L13	complement(join(758070..758246,758318..758595,758660..758798,758884..758895))	Theileria parva strain Muguga	3501195
TpMuguga_04g00387	CDS	PI4KA1	NW_876246.1	759424	763407	D	Phosphatidylinositol 3- and 4-kinase family protein	join(759424..761535,761602..761687,761823..762720,762857..763167,763272..763407)	Theileria parva strain Muguga	3501196
TpMuguga_04g00389	CDS	argS	NW_876246.1	763456	765903	R	arginine--tRNA ligase	complement(join(763456..763627,763728..764130,764217..764387,764491..765105,765175..765266,765329..765428,765460..765591,765684..765813,765898..765903))	Theileria parva strain Muguga	3501197
TpMuguga_04g00390	CDS	TpMuguga_04g00390	NW_876246.1	766126	766960	R	uncharacterized protein	complement(join(766126..766161,766224..766345,766412..766498,766640..766655,766688..766960))	Theileria parva strain Muguga	3501198
TpMuguga_04g00391	CDS	TpMuguga_04g00391	NW_876246.1	767342	767878	D	Histone RNA hairpin-binding protein RNA-binding domain protein	767342..767878	Theileria parva strain Muguga	3501132
TpMuguga_04g00392	CDS	rplN	NW_876246.1	767908	768279	D	Ribosomal protein L14p/L23e family protein	767908..768279	Theileria parva strain Muguga	3501133
TpMuguga_04g00393	CDS	SR33	NW_876246.1	768423	769240	R	or RNP domain; RBD; RRM; RNA recognition motif family protein	complement(join(768423..768852,768933..769240))	Theileria parva strain Muguga	3501134
TpMuguga_04g00394	CDS	rpl22	NW_876246.1	769627	770153	R	60S ribosomal protein L22	complement(join(769627..769746,769832..769963,770037..770153))	Theileria parva strain Muguga	3501135
TpMuguga_04g00395	CDS	Psmd6	NW_876246.1	770832	772566	D	26S proteasome non-ATPase regulatory subunit 6	join(770832..770842,770873..770935,771010..771092,771156..771361,771435..771580,771644..771735,771767..771861,771932..772073,772104..772272,772363..772483,772513..772566)	Theileria parva strain Muguga	3501136
TpMuguga_04g00396	CDS	eif3m	NW_876246.1	772624	774206	R	PCI domain protein	complement(join(772624..773170,773273..773436,773479..773772,773907..774206))	Theileria parva strain Muguga	3501137
TpMuguga_04g00397	CDS	TpMuguga_04g00397	NW_876246.1	774580	775629	R	NOT2 / NOT3 / NOT5 family protein	complement(join(774580..774701,774814..775067,775187..775629))	Theileria parva strain Muguga	3500968
TpMuguga_04g00398	CDS	TpMuguga_04g00398	NW_876246.1	776296	780849	R	Symplekin tight junction protein C terminal family protein	complement(join(776296..777175,777377..780413,780467..780539,780617..780697,780796..780849))	Theileria parva strain Muguga	3500970
TpMuguga_04g00399	CDS	TpMuguga_04g00399	NW_876246.1	781144	782418	R	putative integral membrane protein	complement(join(781144..781207,781292..781700,781782..782418))	Theileria parva strain Muguga	3500971
TpMuguga_04g00400	CDS	MRD1	NW_876246.1	782954	785137	R	or RNP domain; RBD; RRM; RNA recognition motif family protein	complement(782954..785137)	Theileria parva strain Muguga	3500972
TpMuguga_04g00401	CDS	TpMuguga_04g00401	NW_876246.1	785365	786742	D	Type IIB DNA topoisomerase family protein	join(785365..785427,785507..785815,785850..785924,785985..786040,786071..786111,786140..786280,786337..786565,786592..786742)	Theileria parva strain Muguga	3500973
TpMuguga_04g02050	CDS	TpMuguga_04g02050	NW_876246.1	786714	787208	D	uncharacterized protein	786714..787208	Theileria parva strain Muguga	86047803
TpMuguga_04g00402	CDS	Dnajc2	NW_876246.1	787272	790228	R	Myb-like DNA-binding domain protein	complement(join(787272..787304,787457..787576,787609..788266,788438..788530,788565..788654,788767..789021,789155..789278,789450..789941,790075..790228))	Theileria parva strain Muguga	3500974
TpMuguga_04g00403	CDS	TpMuguga_04g00403	NW_876246.1	790659	791231	R	uncharacterized protein	complement(790659..791231)	Theileria parva strain Muguga	3500806
TpMuguga_04g00404	CDS	HTB1	NW_876246.1	791861	792184	R	Histone H2B.1	complement(791861..792184)	Theileria parva strain Muguga	3500807
TpMuguga_04g00405	CDS	TpMuguga_04g00405	NW_876246.1	793171	795578	D	uncharacterized protein	join(793171..793638,793947..795578)	Theileria parva strain Muguga	3500808
TpMuguga_04g02490	CDS	TpMuguga_04g02490	NW_876246.1	795694	795960	R	uncharacterized protein	complement(795694..795960)	Theileria parva strain Muguga	86047841
TpMuguga_04g00406	CDS	TpMuguga_04g00406	NW_876246.1	796380	797246	R	SVSP family protein	complement(796380..797246)	Theileria parva strain Muguga	3500809
TpMuguga_04g00407	CDS	TpMuguga_04g00407	NW_876246.1	797811	799250	R	uncharacterized protein	complement(797811..799250)	Theileria parva strain Muguga	3500810
TpMuguga_04g00408	CDS	TpMuguga_04g00408	NW_876246.1	799466	800164	R	uncharacterized protein	complement(799466..800164)	Theileria parva strain Muguga	3500811
TpMuguga_04g00409	CDS	smc2	NW_876246.1	800435	804175	R	RecF/RecN/SMC N terminal domain protein	complement(800435..804175)	Theileria parva strain Muguga	3500812
TpMuguga_04g00410	CDS	TpMuguga_04g00410	NW_876246.1	804912	806811	D	Protein phosphatase 2C family protein	join(804912..805032,805256..805608,805889..805996,806095..806223,806321..806480,806684..806811)	Theileria parva strain Muguga	3500813
TpMuguga_04g00411	CDS	TpMuguga_04g00411	NW_876246.1	807100	807694	D	uncharacterized protein	join(807100..807135,807205..807291,807323..807375,807598..807694)	Theileria parva strain Muguga	3500698
TpMuguga_04g00412	CDS	TpMuguga_04g00412	NW_876246.1	807942	809771	D	uncharacterized protein	join(807942..808017,808083..808176,808207..808274,809099..809310,809382..809771)	Theileria parva strain Muguga	3500699
TpMuguga_04g00413	CDS	TpMuguga_04g00413	NW_876246.1	809963	810946	D	putative integral membrane protein	join(809963..810201,810499..810946)	Theileria parva strain Muguga	3500700
TpMuguga_04g00414	CDS	TpMuguga_04g00414	NW_876246.1	811226	813532	D	uncharacterized protein	811226..813532	Theileria parva strain Muguga	3500701
TpMuguga_04g00415	CDS	TpMuguga_04g00415	NW_876246.1	814121	815155	R	uncharacterized protein	complement(join(814121..814607,814740..814915,814946..815155))	Theileria parva strain Muguga	3500702
TpMuguga_04g00416	CDS	ELAC2	NW_876246.1	815427	818429	D	Beta-lactamase superfamily protein	join(815427..815536,815859..816053,816122..816392,816535..816678,816708..816966,817007..817062,817102..817143,817173..817308,817490..817583,817631..817754,817802..817915,817946..818078,818108..818241,818271..818429)	Theileria parva strain Muguga	3500703
TpMuguga_04g02055	CDS	TpMuguga_04g02055	NW_876246.1	819109	819406	R	uncharacterized protein	complement(join(819109..819322,819351..819406))	Theileria parva strain Muguga	86047804
TpMuguga_04g02535	CDS	TpMuguga_04g02535	NW_876246.1	820143	825209	D	Calcium-activated BK potassium channel alpha subunit family protein	join(820143..820420,820574..820674,820720..820937,821069..821261,821449..821553,821590..821703,821813..821966,822136..822231,822339..822667,822783..823012,823073..823223,823337..823755,823863..823957,824007..824127,824159..824259,824544..824742,824890..825011,825086..825155,825186..825209)	Theileria parva strain Muguga	3500599
TpMuguga_04g00420	CDS	TpMuguga_04g00420	NW_876246.1	825441	828329	R	putative integral membrane protein	complement(join(825441..825638,825793..825915,826130..826183,826214..826479,826734..827216,827564..827694,827756..827831,827990..828329))	Theileria parva strain Muguga	3500602
TpMuguga_04g00421	CDS	RPS3A	NW_876246.1	829203	829882	D	ribosomal protein S3	join(829203..829220,829250..829882)	Theileria parva strain Muguga	3500615
TpMuguga_04g00422	CDS	TpMuguga_04g00422	NW_876246.1	830008	831342	R	uncharacterized protein	complement(join(830008..830023,830053..830101,830132..830224,830255..830336,830367..830383,830414..830541,830652..830714,830803..830891,830920..831072,831150..831201,831230..831342))	Theileria parva strain Muguga	3500616
TpMuguga_04g00423	CDS	BSU1	NW_876246.1	831770	836064	D	Calcineurin-like phosphoesterase family protein	join(831770..831899,832058..832242,832431..832570,832627..832747,832921..833092,833165..833228,833390..833456,833487..833595,833811..834028,834232..834432,834529..834586,834617..835107,835226..835395,835425..835492,835700..835817,835980..836064)	Theileria parva strain Muguga	3500617
TpMuguga_04g00424	CDS	PSMD1	NW_876246.1	836197	840392	D	Proteasome/cyclosome repeat family protein	join(836197..836423,836521..836780,836851..837410,837577..837750,837836..837932,837986..838126,838222..838311,838349..838470,838503..838601,838729..838999,839083..839246,839288..839435,839573..839825,839924..840392)	Theileria parva strain Muguga	3500618
TpMuguga_04g00425	CDS	TpMuguga_04g00425	NW_876246.1	840818	842125	R	uncharacterized protein	complement(840818..842125)	Theileria parva strain Muguga	3500557
TpMuguga_04g00426	CDS	TpMuguga_04g00426	NW_876246.1	842480	845185	R	uncharacterized protein	complement(842480..845185)	Theileria parva strain Muguga	3500558
TpMuguga_04g00427	CDS	TpMuguga_04g00427	NW_876246.1	845572	848205	R	uncharacterized protein	complement(845572..848205)	Theileria parva strain Muguga	3500559
TpMuguga_04g00428	CDS	TpMuguga_04g00428	NW_876246.1	848655	850066	R	AP2 domain protein	complement(join(848655..849575,849749..850066))	Theileria parva strain Muguga	3500560
TpMuguga_04g00429	CDS	TpMuguga_04g00429	NW_876246.1	850713	851412	D	putative integral membrane protein	join(850713..850885,851055..851119,851231..851317,851381..851412)	Theileria parva strain Muguga	3500561
TpMuguga_04g00430	CDS	NIP7	NW_876246.1	851654	852533	D	60S ribosome subunit biogenesis protein NIP7-like protein	join(851654..851709,851772..851861,851963..852008,852127..852276,852309..852458,852489..852533)	Theileria parva strain Muguga	3500562
TpMuguga_04g00431	CDS	TpMuguga_04g00431	NW_876246.1	852639	854676	D	uncharacterized protein	join(852639..853445,853477..853541,853573..853626,853657..854215,854249..854458,854566..854676)	Theileria parva strain Muguga	3500563
TpMuguga_04g00432	CDS	TpMuguga_04g00432	NW_876246.1	854782	856810	D	uncharacterized protein	join(854782..855310,855373..855557,855592..855683,855752..855797,855830..856810)	Theileria parva strain Muguga	3500570
TpMuguga_04g00433	CDS	TpMuguga_04g00433	NW_876246.1	856937	858485	R	uncharacterized protein	complement(join(856937..857040,857071..857372,857494..858485))	Theileria parva strain Muguga	3500571
TpMuguga_04g00434	CDS	TpMuguga_04g00434	NW_876246.1	858776	860189	D	YL1 nuclear family protein	join(858776..858918,858950..859109,859144..859263,859292..859358,859427..859509,859541..859675,859749..860189)	Theileria parva strain Muguga	3500572
TpMuguga_04g00435	CDS	TpMuguga_04g00435	NW_876246.1	860389	865980	D	putative integral membrane protein	join(860389..860904,860937..864477,864623..865980)	Theileria parva strain Muguga	3500573
TpMuguga_04g00436	CDS	atp6v0d1	NW_876246.1	866013	867329	D	ATP synthase (C/AC39) subunit family protein	join(866013..866251,866285..866338,866378..866565,866627..867054,867087..867329)	Theileria parva strain Muguga	3500574
TpMuguga_04g00437	CDS	p104	NW_876246.1	867748	870522	D	Tp19; 104 kDa microneme-rhoptry antigen	867748..870522	Theileria parva strain Muguga	3500484
TpMuguga_04g00439	CDS	TpMuguga_04g00439	NW_876246.1	870850	872988	R	uncharacterized protein	complement(join(870850..871209,871448..871601,871631..871692,871796..871876,871908..871968,872002..872599,872634..872988))	Theileria parva strain Muguga	3500485
TpMuguga_04g00438	CDS	PSMD3	NW_876246.1	873037	875125	D	26S proteasome non-ATPase regulatory subunit 3 A	join(873037..873531,873618..873695,873767..873825,873856..873979,874028..874097,874128..874237,874268..874381,874412..874573,874609..874734,874809..874901,874973..875053,875084..875125)	Theileria parva strain Muguga	3500486
TpMuguga_04g00440	CDS	TpMuguga_04g00440	NW_876246.1	875298	877529	D	uncharacterized protein	875298..877529	Theileria parva strain Muguga	3500487
TpMuguga_04g02515	CDS	TpMuguga_04g02515	NW_876246.1	877662	878675	R	uncharacterized protein	complement(877662..878675)	Theileria parva strain Muguga	86047842
TpMuguga_04g00441	CDS	VAPB	NW_876246.1	878999	880474	D	V-type ATPase B subunit	878999..880474	Theileria parva strain Muguga	3500488
TpMuguga_04g00442	CDS	TpMuguga_04g00442	NW_876246.1	880634	882064	R	uncharacterized protein	complement(join(880634..880749,880896..880978,881079..882064))	Theileria parva strain Muguga	3500489
TpMuguga_04g00443	CDS	TpMuguga_04g00443	NW_876246.1	882535	884201	D	uncharacterized protein	join(882535..883108,883142..883275,883309..883357,883388..883407,883511..883897,883938..884101,884132..884201)	Theileria parva strain Muguga	3500586
TpMuguga_04g00444	CDS	TpMuguga_04g00444	NW_876246.1	884193	885443	R	JAB1/Mov34/MPN/PAD-1 ubiquitin protease family protein	complement(join(884193..884261,884297..884425,884479..884567,884598..884654,884685..884784,884813..884972,885039..885124,885186..885443))	Theileria parva strain Muguga	3500587
TpMuguga_04g00445	CDS	TpMuguga_04g00445	NW_876246.1	885961	886953	R	Cyclin domain protein	complement(join(885961..886593,886627..886953))	Theileria parva strain Muguga	3500588
TpMuguga_04g00446	CDS	CRK3	NW_876246.1	887166	888209	R	Protein kinase domain protein	complement(887166..888209)	Theileria parva strain Muguga	3500589
TpMuguga_04g02575	CDS	TpMuguga_04g02575	NW_876246.1	888877	889286	D	uncharacterized protein	join(888877..888979,889039..889113,889159..889286)	Theileria parva strain Muguga	86047844
TpMuguga_04g00447	CDS	TpMuguga_04g00447	NW_876246.1	889429	890181	R	uncharacterized protein	complement(889429..890181)	Theileria parva strain Muguga	3500591
TpMuguga_04g00448	CDS	TpMuguga_04g00448	NW_876246.1	891194	894118	D	putative integral membrane protein	join(891194..891952,892007..892449,892505..892598,892662..892799,892882..893487,893562..893681,893721..893804,893957..894118)	Theileria parva strain Muguga	3500592
TpMuguga_04g00449	CDS	TpMuguga_04g00449	NW_876246.1	894468	895785	D	putative integral membrane protein	join(894468..894750,894811..895332,895385..895785)	Theileria parva strain Muguga	3501390
TpMuguga_04g00450	CDS	TpMuguga_04g00450	NW_876246.1	895975	897750	D	Fumble family protein	join(895975..896716,896746..896966,897009..897065,897106..897157,897194..897268,897302..897419,897447..897750)	Theileria parva strain Muguga	3501391
TpMuguga_04g02505	CDS	TpMuguga_04g02505	NW_876246.1	897961	898436	D	uncharacterized protein	join(897961..898124,898178..898271,898332..898436)	Theileria parva strain Muguga	3501392
TpMuguga_04g02510	CDS	TpMuguga_04g02510	NW_876246.1	898436	899557	D	uncharacterized protein	join(898436..898458,898523..898639,898695..898836,898874..899007,899038..899125,899159..899557)	Theileria parva strain Muguga	3501393
TpMuguga_04g00453	CDS	XRCC3	NW_876246.1	899792	901070	D	Rad51 family protein	join(899792..899998,900131..900227,900259..900362,900393..900443,900508..900566,900618..900714,900756..900809,900850..900916,900946..901070)	Theileria parva strain Muguga	3501395
TpMuguga_04g00454	CDS	tbc1d24	NW_876246.1	901460	905402	D	TLD family protein	join(901460..901585,901691..901785,901896..902007,902038..902083,902140..902592,902679..903612,903732..903858,903981..904643,904788..904980,905152..905402)	Theileria parva strain Muguga	3500865
TpMuguga_04g00455	CDS	TpMuguga_04g00455	NW_876246.1	905552	907354	R	putative integral membrane protein	complement(join(905552..906402,906535..907354))	Theileria parva strain Muguga	3500866
TpMuguga_04g00456	CDS	TpMuguga_04g00456	NW_876246.1	907668	908700	R	Inner membrane complex family protein	complement(join(907668..907806,907871..908172,908263..908700))	Theileria parva strain Muguga	3500867
TpMuguga_04g00457	CDS	BCE2	NW_876246.1	909561	911065	D	2-oxoacid dehydrogenases acyltransferase (catalytic domain) family protein	join(909561..909711,909803..910089,910187..910252,910307..911065)	Theileria parva strain Muguga	3500868
TpMuguga_04g00458	CDS	TpMuguga_04g00458	NW_876246.1	911217	913483	R	Spc97 / Spc98 family protein	complement(join(911217..913153,913249..913483))	Theileria parva strain Muguga	3500869
TpMuguga_04g00459	CDS	AKR1	NW_876246.1	913635	916025	R	DHHC palmitoyltransferase family protein	complement(join(913635..914046,914133..914558,914617..914686,914754..915249,915347..915769,915870..916025))	Theileria parva strain Muguga	3501079
TpMuguga_04g00460	CDS	PAH2	NW_876246.1	916775	918919	D	LNS2 (Lipin/Ned1/Smp2) family protein	join(916775..916907,916968..917189,917275..917565,917625..917981,918048..918592,918683..918919)	Theileria parva strain Muguga	3501080
TpMuguga_04g02440	CDS	rpb6	NW_876246.1	919066	919612	R	RNA polymerase Rpb6 family protein	complement(join(919066..919374,919460..919612))	Theileria parva strain Muguga	86047837
TpMuguga_04g02445	CDS	PVA13	NW_876246.1	919758	920598	R	MSP (Major sperm protein) domain protein	complement(join(919758..919969,920136..920598))	Theileria parva strain Muguga	3501081
TpMuguga_04g00462	CDS	TpMuguga_04g00462	NW_876246.1	920895	923124	R	uncharacterized protein	complement(join(920895..920948,921116..921967,922036..922118,922176..922318,922370..922705,922862..923124))	Theileria parva strain Muguga	3501082
TpMuguga_04g00463	CDS	TpMuguga_04g00463	NW_876246.1	923425	926363	R	Polynucleotide 5'-hydroxyl-kinase NOL9	complement(join(923425..923532,923566..923662,923735..923802,923861..923998,924079..924331,924388..924659,924693..924772,924806..924934,924967..925042,925122..925190,925244..925379,925450..925559,925597..925696,925729..925974,926036..926133,926265..926363))	Theileria parva strain Muguga	3501083
TpMuguga_04g00464	CDS	TPI	NW_876246.1	926583	927542	D	Triosephosphate isomerase	join(926583..926697,926819..927267,927354..927542)	Theileria parva strain Muguga	3501262
TpMuguga_04g00465	CDS	CWC2	NW_876246.1	927804	929114	D	Pre-mRNA-splicing factor CWC2	join(927804..927852,927940..929114)	Theileria parva strain Muguga	3501263
TpMuguga_04g00466	CDS	TpMuguga_04g00466	NW_876246.1	929220	929700	R	uncharacterized protein	complement(join(929220..929439,929495..929700))	Theileria parva strain Muguga	3501264
TpMuguga_04g02580	CDS	TpMuguga_04g02580	NW_876246.1	929944	933377	D	uncharacterized protein	join(929944..930189,930225..930460,930491..930524,930589..930676,930732..930889,930923..931063,931100..932884,932950..933092,933125..933221,933252..933377)	Theileria parva strain Muguga	3501266
TpMuguga_04g00469	CDS	Pfdn2	NW_876246.1	933567	934121	D	Prefoldin subunit family protein	join(933567..933673,933794..933917,934008..934121)	Theileria parva strain Muguga	3501267
TpMuguga_04g00470	CDS	lysS	NW_876246.1	934207	936323	R	D; K and N; tRNA synthetases class II family protein	complement(join(934207..935001,935067..936323))	Theileria parva strain Muguga	3501090
TpMuguga_04g00471	CDS	rpc19	NW_876246.1	936537	936891	D	DNA-directed RNA polymerases I and III subunit RPAC2	join(936537..936711,936788..936891)	Theileria parva strain Muguga	3501091
TpMuguga_04g00472	CDS	TpMuguga_04g00472	NW_876246.1	937310	940462	D	B-box zinc finger family protein	join(937310..937480,937570..937726,937809..937898,937930..938155,938184..938334,938384..938737,938772..939287,939355..939453,939558..940157,940223..940462)	Theileria parva strain Muguga	3501092
TpMuguga_04g00473	CDS	pqqL	NW_876246.1	940602	944829	R	Peptidase M16 inactive domain protein	complement(join(940602..941027,941093..941196,941245..941273,941305..941771,941836..942804,942840..942919,942959..943549,943583..943626,943658..943772,943802..943920,943963..944093,944126..944282,944327..944526,944559..944597,944641..944829))	Theileria parva strain Muguga	3501093
TpMuguga_04g00474	CDS	PP2AA3	NW_876246.1	945172	947511	D	Vacuolar 14 Fab1-binding region family protein	join(945172..945436,945534..945688,945717..945837,945867..945957,945990..946293,946325..946650,946684..947089,947137..947208,947238..947338,947406..947511)	Theileria parva strain Muguga	3501094
TpMuguga_04g00475	CDS	DIMT1	NW_876246.1	947599	949174	D	ribosomal RNA small subunit methyltransferase A	join(947599..947710,947784..947987,948036..948315,948386..948519,948599..948669,948702..948866,948898..949042,949119..949174)	Theileria parva strain Muguga	3500907
TpMuguga_04g00476	CDS	TpMuguga_04g00476	NW_876246.1	949175	949639	R	HIT zinc finger family protein	complement(join(949175..949391,949494..949639))	Theileria parva strain Muguga	3500908
TpMuguga_04g00477	CDS	TpMuguga_04g00477	NW_876246.1	949918	952697	R	Root hair defective 3 GTP-binding protein (RHD3) family protein	complement(join(949918..950041,950135..951301,951340..951785,951852..951913,951944..952005,952056..952398,952464..952561,952609..952697))	Theileria parva strain Muguga	3500909
TpMuguga_04g00478	CDS	MCA1	NW_876246.1	952940	956266	R	Caspase domain protein	complement(952940..956266)	Theileria parva strain Muguga	3500910
TpMuguga_04g00479	CDS	TpMuguga_04g00479	NW_876246.1	956681	957925	R	uncharacterized protein	complement(join(956681..956794,956989..957096,957150..957263,957401..957468,957784..957925))	Theileria parva strain Muguga	3500911
TpMuguga_04g00480	CDS	TpMuguga_04g00480	NW_876246.1	958920	959492	R	uncharacterized protein	complement(join(958920..958993,959026..959190,959232..959357,959414..959492))	Theileria parva strain Muguga	3500799
TpMuguga_04g00481	CDS	RPL44	NW_876246.1	960067	960408	D	Ribosomal protein L44 family protein	join(960067..960279,960310..960408)	Theileria parva strain Muguga	3500800
TpMuguga_04g02095	CDS	TpMuguga_04g02095	NW_876246.1	960499	960883	R	Ribosomal protein S6 family protein	complement(join(960499..960697,960732..960883))	Theileria parva strain Muguga	86047809
TpMuguga_04g00482	CDS	TpMuguga_04g00482	NW_876246.1	961332	963167	D	Abscisic acid G-protein coupled receptor family protein	join(961332..961760,961791..963167)	Theileria parva strain Muguga	3500801
TpMuguga_04g00483	CDS	TpMuguga_04g00483	NW_876246.1	963365	966516	R	uncharacterized protein	complement(join(963365..963650,963716..966516))	Theileria parva strain Muguga	3500802
TpMuguga_04g00484	CDS	TpMuguga_04g00484	NW_876246.1	966688	968421	R	OST-HTH Associated domain protein	complement(join(966688..968292,968326..968421))	Theileria parva strain Muguga	3500803
TpMuguga_04g00485	CDS	TpMuguga_04g00485	NW_876246.1	969648	972889	R	WD domain G-beta repeat protein	complement(join(969648..970682,970715..970876,970936..971244,971287..971787,971819..971880,971910..971996,972028..972331,972361..972442,972473..972581,972613..972765,972817..972889))	Theileria parva strain Muguga	3500804
TpMuguga_04g00486	CDS	TpMuguga_04g00486	NW_876246.1	973498	974164	D	uncharacterized protein	join(973498..973789,973819..973886,973937..974048,974085..974164)	Theileria parva strain Muguga	3500631
TpMuguga_04g00487	CDS	TpMuguga_04g00487	NW_876246.1	974357	975595	D	uncharacterized protein	join(974357..974407,974444..975048,975091..975240,975271..975595)	Theileria parva strain Muguga	3500632
TpMuguga_04g02215	CDS	TpMuguga_04g02215	NW_876246.1	975772	977594	D	uncharacterized protein	join(975772..975989,976027..976161,976192..976235,976265..976341,976372..976545,976576..976633,976672..976753,976785..976845,976875..976967,976998..977050,977079..977248,977280..977548,977580..977594)	Theileria parva strain Muguga	3500633
TpMuguga_04g00491	CDS	Sprtn	NW_876246.1	977791	978718	D	SprT-like family protein	join(977791..977967,977996..978064,978133..978207,978238..978351,978384..978465,978496..978582,978612..978718)	Theileria parva strain Muguga	3500636
TpMuguga_04g00492	CDS	TpMuguga_04g00492	NW_876246.1	978784	979979	R	uncharacterized protein	complement(join(978784..979947,979977..979979))	Theileria parva strain Muguga	3500523
TpMuguga_04g00493	CDS	rpl6	NW_876246.1	980838	981476	D	Ribosomal protein L6e family protein	980838..981476	Theileria parva strain Muguga	3500524
TpMuguga_04g00494	CDS	FTSH11	NW_876246.1	981615	983876	R	ATP-dependent metallopeptidase HflB family protein	complement(join(981615..981866,981954..982079,982112..983140,983170..983326,983358..983458,983499..983876))	Theileria parva strain Muguga	3500525
TpMuguga_04g00495	CDS	TpMuguga_04g00495	NW_876246.1	984025	985926	R	uncharacterized protein	complement(join(984025..984122,984155..984294,984325..984505,984535..984606,984636..984788,984818..985100,985131..985328,985357..985926))	Theileria parva strain Muguga	3500526
TpMuguga_04g00496	CDS	KRI1	NW_876246.1	986256	988135	D	KRI1-like family protein	join(986256..986358,986391..986575,986607..986700,986731..986870,986902..986944,986977..987091,987123..987185,987268..988135)	Theileria parva strain Muguga	3500527
TpMuguga_04g00497	CDS	TpMuguga_04g00497	NW_876246.1	988415	989535	R	uncharacterized protein	complement(join(988415..988480,988519..988756,988787..988850,988890..989003,989047..989146,989178..989296,989327..989389,989430..989535))	Theileria parva strain Muguga	3500939
TpMuguga_04g00499	CDS	TpMuguga_04g00499	NW_876246.1	989864	991256	D	putative integral membrane protein	join(989864..989929,989963..990271,990303..990600,990631..990766,990799..990935,990968..991098,991128..991256)	Theileria parva strain Muguga	3500941
TpMuguga_04g00500	CDS	SMC5	NW_876246.1	991587	994897	D	AAA domain protein	join(991587..992348,992381..994897)	Theileria parva strain Muguga	3500942
TpMuguga_04g00501	CDS	RECQL4A	NW_876246.1	995349	998483	D	ATP-dependent DNA helicase RecQ family protein	995349..998483	Theileria parva strain Muguga	3500943
TpMuguga_04g02225	CDS	TpMuguga_04g02225	NW_876246.1	998476	999143	R	uncharacterized protein	complement(join(998476..998553,998664..998718,998767..998926,998962..999013,999045..999143))	Theileria parva strain Muguga	86047821
TpMuguga_04g00502	CDS	TpMuguga_04g00502	NW_876246.1	999194	1001711	R	uncharacterized protein	complement(join(999194..999217,999255..999355,999387..999810,999840..1000016,1000046..1000119,1000149..1000638,1000670..1000873,1000904..1001094,1001126..1001310,1001344..1001455,1001498..1001603,1001637..1001711))	Theileria parva strain Muguga	3500944
TpMuguga_04g00503	CDS	TpMuguga_04g00503	NW_876246.1	1001893	1002630	R	uncharacterized protein	complement(1001893..1002630)	Theileria parva strain Muguga	3500993
TpMuguga_04g00504	CDS	TpMuguga_04g00504	NW_876246.1	1002720	1004510	R	Thymidylate synthase family protein	complement(join(1002720..1002944,1002983..1003143,1003175..1003269,1003302..1003368,1003398..1003543,1003576..1003669,1003699..1004079,1004110..1004204,1004236..1004510))	Theileria parva strain Muguga	3500994
TpMuguga_04g00505	CDS	TpMuguga_04g00505	NW_876246.1	1004719	1005216	R	putative integral membrane protein	complement(join(1004719..1004812,1004843..1005102,1005196..1005216))	Theileria parva strain Muguga	3500995
TpMuguga_04g00506	CDS	CPK1	NW_876246.1	1005666	1008516	D	Protein kinase domain protein	join(1005666..1005843,1005893..1006557,1006588..1006675,1006706..1006785,1006817..1006946,1006976..1007210,1007240..1007454,1007484..1007624,1007653..1007891,1007925..1008171,1008201..1008277,1008308..1008427,1008481..1008516)	Theileria parva strain Muguga	3500996
TpMuguga_04g00507	CDS	TpMuguga_04g00507	NW_876246.1	1008758	1013443	D	uncharacterized protein	1008758..1013443	Theileria parva strain Muguga	3500997
TpMuguga_04g00508	CDS	TpMuguga_04g00508	NW_876246.1	1013707	1015700	D	Histone acetyl transferase HAT1 N-terminus family protein	join(1013707..1013820,1013908..1015265,1015296..1015399,1015430..1015575,1015608..1015700)	Theileria parva strain Muguga	3500998
TpMuguga_04g02520	CDS	MCM9	NW_876246.1	1015880	1019064	D	MCM2/3/5 family protein	join(1015880..1016888,1016919..1017047,1017077..1017158,1017222..1017380,1017413..1017504,1017538..1017672,1017703..1017831,1017866..1017973,1018005..1018195,1018226..1018742,1018775..1019064)	Theileria parva strain Muguga	3500892
TpMuguga_04g02525	CDS	TpMuguga_04g02525	NW_876246.1	1019230	1021442	D	RAP domain protein	join(1019230..1019330,1019365..1019590,1019623..1019777,1019809..1019845,1019876..1019945,1019977..1020073,1020103..1020206,1020237..1020384,1020416..1020473,1020504..1020602,1020632..1020725,1020755..1020991,1021021..1021125,1021159..1021267,1021319..1021442)	Theileria parva strain Muguga	3500894
TpMuguga_04g00513	CDS	TpMuguga_04g00513	NW_876246.1	1021450	1021911	D	Mitochondrial ribosomal protein L37 family protein	join(1021450..1021746,1021777..1021911)	Theileria parva strain Muguga	3500895
TpMuguga_04g00514	CDS	Gspt1	NW_876246.1	1022000	1023774	R	translation elongation factor EF-1 subunit alpha	complement(join(1022000..1022413,1022445..1022935,1022968..1023190,1023222..1023345,1023376..1023502,1023534..1023774))	Theileria parva strain Muguga	3500987
TpMuguga_04g02410	CDS	LONRF1	NW_876246.1	1024054	1025625	D	Ring finger domain protein	join(1024054..1024083,1024115..1024189,1024226..1024373,1024404..1024489,1024520..1024591,1024623..1024694,1024725..1025116,1025181..1025353,1025402..1025474,1025505..1025625)	Theileria parva strain Muguga	3500988
TpMuguga_04g00517	CDS	TpMuguga_04g00517	NW_876246.1	1025626	1027001	R	uncharacterized protein	complement(join(1025626..1025762,1025792..1025916,1025953..1026109,1026168..1026258,1026287..1026475,1026505..1026763,1026793..1027001))	Theileria parva strain Muguga	3500990
TpMuguga_04g00518	CDS	fhkD	NW_876246.1	1027172	1030644	R	Protein kinase domain protein	complement(join(1027172..1029816,1029849..1029977,1030007..1030165,1030196..1030393,1030425..1030644))	Theileria parva strain Muguga	3500991
TpMuguga_04g02540	CDS	UBR3	NW_876246.1	1031237	1037990	D	putative zinc finger in N-recognin (UBR box) family protein	join(1031237..1031396,1031444..1031536,1031568..1031639,1031670..1031919,1031950..1032034,1032067..1032135,1032168..1032216,1032249..1032420,1032450..1032625,1032658..1037990)	Theileria parva strain Muguga	3500992
TpMuguga_04g00521	CDS	TpMuguga_04g00521	NW_876246.1	1038107	1038842	D	uncharacterized protein	join(1038107..1038233,1038263..1038315,1038348..1038842)	Theileria parva strain Muguga	3501069
TpMuguga_04g02485	CDS	TpMuguga_04g02485	NW_876246.1	1039114	1046961	R	uncharacterized protein	complement(join(1039114..1039350,1039458..1039639,1039669..1041208,1041240..1041456,1041488..1046961))	Theileria parva strain Muguga	3501070
TpMuguga_04g00524	CDS	TpMuguga_04g00524	NW_876246.1	1047284	1049795	D	uncharacterized protein	join(1047284..1049203,1049236..1049665,1049695..1049795)	Theileria parva strain Muguga	3501072
TpMuguga_04g00525	CDS	pigm	NW_876246.1	1049991	1051695	R	Mannosyltransferase (PIG-M) family protein	complement(join(1049991..1050092,1050121..1050333,1050362..1050457,1050515..1050632,1050671..1050822,1050847..1050928,1050998..1051267,1051324..1051435,1051560..1051695))	Theileria parva strain Muguga	3501073
TpMuguga_04g00526	CDS	TpMuguga_04g00526	NW_876246.1	1052501	1053466	D	uncharacterized protein	1052501..1053466	Theileria parva strain Muguga	3501095
TpMuguga_04g00527	CDS	TpMuguga_04g00527	NW_876246.1	1054009	1055352	D	putative integral membrane protein	join(1054009..1054158,1054192..1054681,1054816..1055157,1055188..1055238,1055273..1055352)	Theileria parva strain Muguga	3501096
TpMuguga_04g00528	CDS	TpMuguga_04g00528	NW_876246.1	1055599	1058171	D	Galactose oxidase central domain protein	join(1055599..1055692,1055734..1056492,1056547..1057058,1057092..1057178,1057210..1057261,1057338..1057474,1057551..1057662,1057693..1058171)	Theileria parva strain Muguga	3501097
TpMuguga_04g00529	CDS	rpoM	NW_876246.1	1058384	1058752	R	Transcription factor S-II (TFIIS) family protein	complement(join(1058384..1058505,1058548..1058752))	Theileria parva strain Muguga	3501098
TpMuguga_04g00530	CDS	UVH3	NW_876246.1	1058831	1061338	R	DNA repair protein Rad2	complement(1058831..1061338)	Theileria parva strain Muguga	3501099
TpMuguga_04g00531	CDS	TpMuguga_04g00531	NW_876246.1	1061355	1061684	R	Tim10/DDP family zinc finger family protein	complement(join(1061355..1061427,1061467..1061567,1061610..1061684))	Theileria parva strain Muguga	3501100
TpMuguga_04g00532	CDS	TpMuguga_04g00532	NW_876246.1	1062073	1062693	D	uncharacterized protein	1062073..1062693	Theileria parva strain Muguga	3501366
TpMuguga_04g00533	CDS	trm10	NW_876246.1	1062730	1063796	D	tRNA (Guanine-1)-methyltransferase family protein	join(1062730..1062919,1062974..1063116,1063147..1063212,1063250..1063330,1063364..1063441,1063471..1063539,1063579..1063638,1063668..1063796)	Theileria parva strain Muguga	3501367
TpMuguga_04g00534	CDS	TpMuguga_04g00534	NW_876246.1	1063942	1064442	D	Zinc-finger double-stranded RNA-binding family protein	join(1063942..1064083,1064136..1064242,1064317..1064442)	Theileria parva strain Muguga	3501368
TpMuguga_04g00535	CDS	TpMuguga_04g00535	NW_876246.1	1064946	1066093	D	uncharacterized protein	join(1064946..1065378,1065444..1066093)	Theileria parva strain Muguga	3501369
TpMuguga_04g00536	CDS	TpMuguga_04g00536	NW_876246.1	1066308	1069343	D	Rab-GTPase-TBC domain protein	1066308..1069343	Theileria parva strain Muguga	3501370
TpMuguga_04g00537	CDS	TpMuguga_04g00537	NW_876246.1	1069512	1070909	R	SURF1 family protein	complement(1069512..1070909)	Theileria parva strain Muguga	3501371
TpMuguga_04g00538	CDS	TpMuguga_04g00538	NW_876246.1	1071448	1072585	D	zinc-RING finger domain protein	join(1071448..1071535,1071571..1071633,1071723..1072585)	Theileria parva strain Muguga	3501326
TpMuguga_04g00539	CDS	TpMuguga_04g00539	NW_876246.1	1072705	1073111	R	Dolichol-phosphate mannosyltransferase subunit 3 (DPM3) family protein	complement(join(1072705..1072797,1072844..1072951,1072989..1073111))	Theileria parva strain Muguga	3501327
TpMuguga_04g00540	CDS	Puf60	NW_876246.1	1073179	1074857	R	or RNP domain; RBD; RRM; RNA recognition motif family protein	complement(join(1073179..1073288,1073319..1073424,1073454..1073851,1073905..1074012,1074068..1074269,1074321..1074857))	Theileria parva strain Muguga	3501328
TpMuguga_04g00541	CDS	cse1l	NW_876246.1	1075667	1079689	D	CAS/CSE domain protein	join(1075667..1075871,1075903..1077210,1077282..1077823,1077915..1078217,1078274..1078624,1078689..1078787,1078865..1079689)	Theileria parva strain Muguga	3501329
TpMuguga_04g00542	CDS	SAR1	NW_876246.1	1080159	1080813	D	ADP-ribosylation factor family protein	join(1080159..1080178,1080246..1080813)	Theileria parva strain Muguga	3501330
TpMuguga_04g00543	CDS	TpMuguga_04g00543	NW_876246.1	1080961	1081670	D	or RNP domain; RBD; RRM; RNA recognition motif family protein	join(1080961..1081057,1081092..1081125,1081159..1081242,1081272..1081410,1081442..1081571,1081606..1081670)	Theileria parva strain Muguga	3501331
TpMuguga_04g00544	CDS	TpMuguga_04g00544	NW_876246.1	1081700	1085028	R	uncharacterized protein	complement(join(1081700..1081813,1081883..1082384,1082446..1082513,1082587..1084709,1084833..1085028))	Theileria parva strain Muguga	3501107
TpMuguga_04g00545	CDS	MAF1	NW_876246.1	1085120	1085889	R	Maf1 regulator family protein	complement(join(1085120..1085413,1085465..1085597,1085630..1085746,1085780..1085889))	Theileria parva strain Muguga	3501108
TpMuguga_04g00546	CDS	TpMuguga_04g00546	NW_876246.1	1086316	1087222	D	SPFH domain / Band 7 family protein	join(1086316..1086652,1086687..1087126,1087178..1087222)	Theileria parva strain Muguga	3501109
TpMuguga_04g00547	CDS	TpMuguga_04g00547	NW_876246.1	1087298	1087662	R	Iron-binding zinc finger CDGSH type family protein	complement(join(1087298..1087332,1087367..1087426,1087459..1087542,1087587..1087662))	Theileria parva strain Muguga	3501110
TpMuguga_04g00548	CDS	rsc5	NW_876246.1	1088220	1089472	D	CRAL/TRIO domain protein	join(1088220..1088824,1088947..1089472)	Theileria parva strain Muguga	3501111
TpMuguga_04g00549	CDS	Letm1	NW_876246.1	1089718	1092062	D	LETM1-like family protein	join(1089718..1090657,1090687..1090786,1090819..1090897,1090961..1091025,1091107..1091724,1091783..1092062)	Theileria parva strain Muguga	3501112
TpMuguga_04g00550	CDS	memo1	NW_876246.1	1092190	1093583	R	Memo-like family protein	complement(join(1092190..1092261,1092296..1092349,1092383..1092453,1092549..1092658,1092688..1092734,1092789..1092820,1092851..1092915,1092984..1093208,1093284..1093352,1093389..1093473,1093541..1093583))	Theileria parva strain Muguga	3501084
TpMuguga_04g00551	CDS	CDKG-2	NW_876246.1	1093764	1095368	R	Protein kinase domain protein	complement(join(1093764..1093849,1093901..1093942,1094018..1094078,1094149..1094289,1094322..1095368))	Theileria parva strain Muguga	3501085
TpMuguga_04g00552	CDS	mcfH	NW_876246.1	1095750	1096817	D	Mitochondrial carrier family protein	join(1095750..1095813,1095843..1095995,1096034..1096358,1096426..1096558,1096626..1096817)	Theileria parva strain Muguga	3501086
TpMuguga_04g00553	CDS	TpMuguga_04g00553	NW_876246.1	1097140	1098083	D	BTB/POZ domain protein	join(1097140..1097841,1097994..1098083)	Theileria parva strain Muguga	3501087
TpMuguga_04g02365	CDS	TpMuguga_04g02365	NW_876246.1	1098095	1099845	R	Ring finger domain protein	complement(join(1098095..1098677,1098758..1098841,1098871..1098926,1098966..1099020,1099052..1099233,1099315..1099398,1099430..1099485,1099520..1099632,1099745..1099845))	Theileria parva strain Muguga	3501089
TpMuguga_04g00556	CDS	TpMuguga_04g00556	NW_876246.1	1100223	1103429	D	TH1 family protein	join(1100223..1100481,1100547..1100584,1100616..1100670,1100701..1100771,1100801..1101345,1101379..1101551,1101614..1102060,1102090..1102807,1102837..1102894,1102930..1103016,1103081..1103207,1103275..1103429)	Theileria parva strain Muguga	3500951
TpMuguga_04g00557	CDS	FH13	NW_876246.1	1103816	1108897	D	Formin Homology 2 domain protein	join(1103816..1107547,1107614..1107730,1107793..1107880,1107928..1108277,1108310..1108567,1108610..1108897)	Theileria parva strain Muguga	3500952
TpMuguga_04g00558	CDS	TpMuguga_04g00558	NW_876246.1	1108929	1109903	R	uncharacterized protein	complement(join(1108929..1109068,1109127..1109147,1109179..1109307,1109340..1109403,1109442..1109527,1109559..1109610,1109664..1109801,1109835..1109903))	Theileria parva strain Muguga	3500953
TpMuguga_04g00559	CDS	TpMuguga_04g00559	NW_876246.1	1110055	1110844	R	SGS domain protein	complement(join(1110055..1110111,1110146..1110283,1110312..1110388,1110458..1110491,1110555..1110646,1110677..1110801,1110837..1110844))	Theileria parva strain Muguga	3500954
TpMuguga_04g00560	CDS	TpMuguga_04g00560	NW_876246.1	1111150	1112446	D	Hinge domain of cleavage stimulation factor subunit 2 family protein	join(1111150..1111219,1111277..1111797,1111829..1111933,1111963..1112243,1112303..1112378,1112411..1112446)	Theileria parva strain Muguga	3500955
TpMuguga_04g00561	CDS	pepA	NW_876246.1	1112615	1114591	D	cytosol aminopeptidase domain protein	join(1112615..1112889,1112973..1113300,1113352..1113663,1113727..1113927,1113989..1114112,1114175..1114235,1114293..1114449,1114481..1114591)	Theileria parva strain Muguga	3500793
TpMuguga_04g02685	CDS	TpMuguga_04g02685	NW_876246.1	1114908	1115651	D	uncharacterized protein	1114908..1115651	Theileria parva strain Muguga	86047852
TpMuguga_04g00562	CDS	DBP2	NW_876246.1	1115717	1117915	R	DEAD/DEAH box helicase	complement(join(1115717..1115964,1116100..1116990,1117147..1117915))	Theileria parva strain Muguga	3500794
TpMuguga_04g00563	CDS	TpMuguga_04g00563	NW_876246.1	1118884	1120192	D	Hyaluronan / mRNA binding family protein	join(1118884..1119016,1119291..1120087,1120118..1120192)	Theileria parva strain Muguga	3500795
TpMuguga_04g02710	CDS	TpMuguga_04g02710	NW_876246.1	1120316	1121285	R	SPOC domain protein	complement(join(1120316..1120371,1120431..1120501,1120531..1120631,1120676..1120924,1121013..1121285))	Theileria parva strain Muguga	3500797
TpMuguga_04g00566	CDS	MTQ2	NW_876246.1	1121415	1122320	R	putative methylase	complement(join(1121415..1121483,1121514..1121582,1121612..1121644,1121693..1121800,1121852..1122083,1122116..1122259,1122310..1122320))	Theileria parva strain Muguga	3500798
TpMuguga_04g02705	CDS	TpMuguga_04g02705	NW_876246.1	1122324	1122677	R	putative integral membrane protein	complement(join(1122324..1122383,1122437..1122523,1122585..1122677))	Theileria parva strain Muguga	86047854
TpMuguga_04g00567	CDS	TpMuguga_04g00567	NW_876246.1	1122783	1123427	R	putative integral membrane protein	complement(1122783..1123427)	Theileria parva strain Muguga	3500754
TpMuguga_04g00568	CDS	trappc4	NW_876246.1	1123483	1124135	R	Sybindin-like family protein	complement(join(1123483..1123670,1123717..1123785,1123881..1124013,1124085..1124135))	Theileria parva strain Muguga	3500755
TpMuguga_04g00569	CDS	TpMuguga_04g00569	NW_876246.1	1124899	1126125	D	uncharacterized protein	1124899..1126125	Theileria parva strain Muguga	3500756
TpMuguga_04g00570	CDS	TpMuguga_04g00570	NW_876246.1	1126494	1126796	D	putative integral membrane protein	1126494..1126796	Theileria parva strain Muguga	3500757
TpMuguga_04g00571	CDS	PI4KG7	NW_876246.1	1127466	1130397	D	Phosphatidylinositol 3- and 4-kinase family protein	join(1127466..1127672,1127861..1128056,1128140..1128235,1128357..1128683,1128826..1129595,1129801..1130397)	Theileria parva strain Muguga	3500758
TpMuguga_04g00572	CDS	valS	NW_876246.1	1130425	1132887	R	I; L; M and V; tRNA synthetases class I family protein	complement(1130425..1132887)	Theileria parva strain Muguga	3500759
TpMuguga_04g00573	CDS	TpMuguga_04g00573	NW_876246.1	1132988	1137136	R	PHD-zinc-finger like domain protein	complement(1132988..1137136)	Theileria parva strain Muguga	3500760
TpMuguga_04g00574	CDS	TpMuguga_04g00574	NW_876246.1	1137776	1141053	D	Male gamete fusion factor family protein	join(1137776..1138015,1138133..1138240,1138276..1138486,1138619..1138780,1138849..1139034,1139108..1139241,1139272..1139320,1139427..1139635,1139666..1139898,1139983..1140050,1140081..1140272,1140437..1140564,1140641..1140761,1140845..1141053)	Theileria parva strain Muguga	3500547
TpMuguga_04g00575	CDS	RABF2B	NW_876246.1	1141238	1142152	R	uncharacterized protein	complement(1141238..1142152)	Theileria parva strain Muguga	3500548
TpMuguga_04g00576	CDS	TpMuguga_04g00576	NW_876246.1	1142649	1144173	D	uncharacterized protein	join(1142649..1142981,1143163..1144173)	Theileria parva strain Muguga	3500549
TpMuguga_04g00577	CDS	TpMuguga_04g00577	NW_876246.1	1144348	1146440	R	Cyclin domain protein	complement(join(1144348..1144400,1144434..1144491,1144521..1144596,1144650..1144745,1144801..1144910,1145608..1145711,1145751..1145848,1145889..1145962,1146040..1146152,1146299..1146440))	Theileria parva strain Muguga	3500550
TpMuguga_04g00578	CDS	TpMuguga_04g00578	NW_876246.1	1146546	1149388	D	UPF0652 protein	join(1146546..1146615,1146647..1146723,1146909..1147524,1147998..1148779,1149074..1149388)	Theileria parva strain Muguga	3500551
TpMuguga_04g00579	CDS	TpMuguga_04g00579	NW_876246.1	1149497	1150186	R	uncharacterized protein	complement(join(1149497..1149688,1150058..1150186))	Theileria parva strain Muguga	3500540
TpMuguga_04g00580	CDS	CNOT8	NW_876246.1	1151047	1152735	D	CAF1 family ribonuclease family protein	1151047..1152735	Theileria parva strain Muguga	3500541
TpMuguga_04g00582	CDS	TpMuguga_04g00582	NW_876246.1	1153504	1153719	R	uncharacterized protein	complement(join(1153504..1153572,1153603..1153719))	Theileria parva strain Muguga	3500543
TpMuguga_04g00583	CDS	TpMuguga_04g00583	NW_876246.1	1154068	1154293	D	uncharacterized protein	join(1154068..1154223,1154255..1154293)	Theileria parva strain Muguga	3500544
TpMuguga_04g00584	CDS	TpMuguga_04g00584	NW_876246.1	1154484	1154840	D	uncharacterized protein	join(1154484..1154633,1154775..1154840)	Theileria parva strain Muguga	3500545
TpMuguga_04g00585	CDS	TpMuguga_04g00585	NW_876246.1	1155300	1155590	D	putative integral membrane protein	join(1155300..1155461,1155492..1155590)	Theileria parva strain Muguga	3500546
TpMuguga_04g02270	CDS	TpMuguga_04g02270	NW_876246.1	1155855	1159590	D	putative integral membrane protein	join(1155855..1156890,1157057..1157273,1157424..1158254,1158397..1158952,1159054..1159167,1159378..1159590)	Theileria parva strain Muguga	3501354
TpMuguga_04g02130	CDS	cdkal1	NW_876246.1	1159694	1161451	R	Threonylcarbamoyladenosine tRNA methylthiotransferase domain protein	complement(join(1159694..1159980,1160199..1160527,1160607..1160792,1160872..1161064,1161226..1161451))	Theileria parva strain Muguga	3501355
TpMuguga_04g02155	CDS	TpMuguga_04g02155	NW_876246.1	1161667	1162600	R	putative integral membrane protein	complement(join(1161667..1161705,1161757..1162277,1162360..1162600))	Theileria parva strain Muguga	86047815
TpMuguga_04g00589	CDS	TpMuguga_04g00589	NW_876246.1	1162916	1163908	D	uncharacterized protein	1162916..1163908	Theileria parva strain Muguga	86047796
TpMuguga_04g00590	CDS	TpMuguga_04g00590	NW_876246.1	1163939	1167685	R	uncharacterized protein	complement(1163939..1167685)	Theileria parva strain Muguga	3501357
TpMuguga_04g00591	CDS	TpMuguga_04g00591	NW_876246.1	1167857	1168648	R	putative integral membrane protein	complement(1167857..1168648)	Theileria parva strain Muguga	3501358
TpMuguga_04g00592	CDS	lrs-1	NW_876246.1	1169083	1173075	R	leucine--tRNA ligase	complement(join(1169083..1169168,1169222..1169505,1169550..1169678,1169710..1169848,1169937..1170985,1171081..1171328,1171408..1171857,1171910..1172698,1172731..1172780,1172823..1173075))	Theileria parva strain Muguga	3501359
TpMuguga_04g00593	CDS	TpMuguga_04g00593	NW_876246.1	1173267	1174211	D	Mitochondrial carrier family protein	1173267..1174211	Theileria parva strain Muguga	3500552
TpMuguga_04g00594	CDS	CUL1	NW_876246.1	1174213	1176578	R	Cullin family protein	complement(join(1174213..1174293,1174387..1175664,1175695..1175856,1175887..1176144,1176201..1176534,1176565..1176578))	Theileria parva strain Muguga	3500553
TpMuguga_04g00595	CDS	TpMuguga_04g00595	NW_876246.1	1177073	1182778	R	uncharacterized protein	complement(join(1177073..1177240,1177340..1178256,1178338..1182482,1182508..1182518,1182560..1182778))	Theileria parva strain Muguga	3500554
TpMuguga_04g00596	CDS	TpMuguga_04g00596	NW_876246.1	1183199	1184160	D	uncharacterized protein	join(1183199..1183301,1183413..1183830,1183860..1184160)	Theileria parva strain Muguga	3500555
TpMuguga_04g00597	CDS	erpA	NW_876246.1	1184174	1184497	D	Iron-sulfur cluster insertion protein ErpA	join(1184174..1184310,1184362..1184497)	Theileria parva strain Muguga	3500556
TpMuguga_04g00598	CDS	SERA	NW_876246.1	1184499	1185647	R	Papain family cysteine protease family protein	complement(join(1184499..1184894,1184911..1184937,1184971..1185100,1185141..1185301,1185337..1185485,1185515..1185647))	Theileria parva strain Muguga	3500780
TpMuguga_04g00599	CDS	TpMuguga_04g00599	NW_876246.1	1185895	1186542	R	uncharacterized protein	complement(1185895..1186542)	Theileria parva strain Muguga	3500781
TpMuguga_04g00600	CDS	TpMuguga_04g00600	NW_876246.1	1186653	1188893	R	uncharacterized protein	complement(1186653..1188893)	Theileria parva strain Muguga	3500782
TpMuguga_04g02650	CDS	TpMuguga_04g02650	NW_876246.1	1189172	1189550	D	putative integral membrane protein	join(1189172..1189399,1189430..1189469,1189501..1189550)	Theileria parva strain Muguga	86047850
TpMuguga_04g02655	CDS	TpMuguga_04g02655	NW_876246.1	1189705	1190069	D	ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein	join(1189705..1189823,1189863..1189986,1190016..1190069)	Theileria parva strain Muguga	3500783
TpMuguga_04g00602	CDS	TpMuguga_04g00602	NW_876246.1	1190157	1191386	R	AP2 domain protein	complement(1190157..1191386)	Theileria parva strain Muguga	3500784
TpMuguga_04g00603	CDS	TpMuguga_04g00603	NW_876246.1	1192311	1193505	D	uncharacterized protein	join(1192311..1193096,1193155..1193505)	Theileria parva strain Muguga	3500785
TpMuguga_04g00604	CDS	TpMuguga_04g00604	NW_876246.1	1193577	1194583	R	39S ribosomal L46 family protein	complement(join(1193577..1193744,1193777..1193926,1193978..1194127,1194161..1194583))	Theileria parva strain Muguga	3500786
TpMuguga_04g00605	CDS	DHRSX	NW_876246.1	1194692	1196036	R	short chain dehydrogenase family protein	complement(join(1194692..1194842,1194875..1195036,1195071..1195469,1195501..1195636,1195670..1196036))	Theileria parva strain Muguga	3500999
TpMuguga_04g00606	CDS	DHRSX	NW_876246.1	1196365	1197776	R	short chain dehydrogenase family protein	complement(join(1196365..1196512,1196543..1196704,1196745..1197143,1197175..1197310,1197344..1197776))	Theileria parva strain Muguga	3501000
TpMuguga_04g00607	CDS	PYK	NW_876246.1	1198064	1199725	R	pyruvate kinase	complement(join(1198064..1198697,1198786..1199506,1199539..1199725))	Theileria parva strain Muguga	3501001
TpMuguga_04g00608	CDS	Klhdc4	NW_876246.1	1200154	1201847	R	Galactose oxidase central domain protein	complement(join(1200154..1200343,1200374..1200586,1200616..1200739,1200771..1200867,1200900..1200973,1201004..1201190,1201227..1201377,1201407..1201565,1201621..1201847))	Theileria parva strain Muguga	3501002
TpMuguga_04g00609	CDS	ANK2	NW_876246.1	1201994	1204759	R	Ankyrin repeats (3 copies) family protein	complement(1201994..1204759)	Theileria parva strain Muguga	3501003
TpMuguga_04g00610	CDS	NIFU4	NW_876246.1	1205279	1205873	D	NifU-like domain protein	join(1205279..1205648,1205701..1205873)	Theileria parva strain Muguga	3501004
TpMuguga_04g00611	CDS	TpMuguga_04g00611	NW_876246.1	1205845	1207665	R	Nucleolar Nop52 family protein	complement(join(1205845..1205856,1205996..1206089,1206119..1207665))	Theileria parva strain Muguga	3501039
TpMuguga_04g02220	CDS	TpMuguga_04g02220	NW_876246.1	1208232	1210052	D	Elongation factor Tu GTP binding domain protein	join(1208232..1209185,1209239..1209596,1209628..1210052)	Theileria parva strain Muguga	3501040
TpMuguga_04g00614	CDS	ISW2	NW_876246.1	1211061	1217684	D	SNF2 family protein	join(1211061..1211130,1211200..1211691,1211728..1212018,1212106..1212351,1212483..1212875,1212907..1212998,1213188..1217684)	Theileria parva strain Muguga	3501042
TpMuguga_04g00615	CDS	gpi12	NW_876246.1	1217938	1218905	R	GlcNAc-PI de-N-acetylase family protein	complement(join(1217938..1218073,1218104..1218211,1218328..1218574,1218641..1218905))	Theileria parva strain Muguga	3501043
TpMuguga_04g00616	CDS	TpMuguga_04g00616	NW_876246.1	1219019	1219559	R	putative integral membrane protein	complement(join(1219019..1219144,1219275..1219396,1219427..1219559))	Theileria parva strain Muguga	3501044
TpMuguga_04g00617	CDS	TpMuguga_04g00617	NW_876246.1	1220391	1221151	D	uncharacterized protein	join(1220391..1220633,1220687..1221004,1221053..1221151)	Theileria parva strain Muguga	3501182
TpMuguga_04g00618	CDS	PBC1	NW_876246.1	1221408	1222223	D	Proteasome subunit beta type-3	join(1221408..1221410,1221534..1221724,1221758..1222040,1222080..1222223)	Theileria parva strain Muguga	3501183
TpMuguga_04g00619	CDS	TpMuguga_04g00619	NW_876246.1	1222618	1224387	D	uncharacterized protein	1222618..1224387	Theileria parva strain Muguga	3501184
TpMuguga_04g00620	CDS	idhM	NW_876246.1	1224566	1226214	R	NADP-dependent isocitrate dehydrogenase	complement(join(1224566..1224820,1224866..1224977,1225034..1225625,1225666..1225753,1225808..1225885,1225960..1226214))	Theileria parva strain Muguga	3501185
TpMuguga_04g00621	CDS	MRE11A	NW_876246.1	1226766	1229798	D	Mre11 DNA-binding presumed domain protein	join(1226766..1226976,1227041..1227806,1227916..1228115,1228146..1228204,1228234..1228794,1228824..1228963,1229035..1229099,1229128..1229321,1229351..1229488,1229518..1229654,1229684..1229798)	Theileria parva strain Muguga	3501186
TpMuguga_04g00622	CDS	TpMuguga_04g00622	NW_876246.1	1229953	1231727	D	phenylalanyl-tRNA synthetase subunit alpha	join(1229953..1230243,1230303..1230693,1230723..1230838,1230870..1230977,1231010..1231119,1231148..1231241,1231273..1231365,1231395..1231727)	Theileria parva strain Muguga	3501187
TpMuguga_04g02075	CDS	TpMuguga_04g02075	NW_876246.1	1231902	1232465	D	uncharacterized protein	join(1231902..1231929,1231962..1232267,1232318..1232344,1232374..1232465)	Theileria parva strain Muguga	86047806
TpMuguga_04g00623	CDS	TpMuguga_04g00623	NW_876246.1	1232489	1232935	R	Tubulin binding cofactor A family protein	complement(join(1232489..1232764,1232819..1232935))	Theileria parva strain Muguga	3501229
TpMuguga_04g00624	CDS	nat5	NW_876246.1	1233120	1234202	R	Acetyltransferase (GNAT) family protein	complement(join(1233120..1233400,1233498..1233720,1233846..1233937,1233967..1234056,1234145..1234202))	Theileria parva strain Muguga	3501230
TpMuguga_04g00625	CDS	TpMuguga_04g00625	NW_876246.1	1234364	1235346	R	uncharacterized protein	complement(join(1234364..1234483,1234581..1234712,1234743..1234786,1234849..1234902,1234966..1235056,1235120..1235177,1235237..1235346))	Theileria parva strain Muguga	3501231
TpMuguga_04g00626	CDS	cpsf5	NW_876246.1	1235535	1236319	R	Nucleotide hydrolase family protein	complement(join(1235535..1235693,1235798..1236319))	Theileria parva strain Muguga	3501232
TpMuguga_04g02545	CDS	TpMuguga_04g02545	NW_876246.1	1236436	1240181	R	PA14 domain protein	complement(join(1236436..1236723,1236753..1236865,1236920..1237439,1237469..1237557,1237590..1237706,1237737..1237886,1237919..1238412,1238444..1238536,1238572..1238809,1238841..1238894,1238926..1239083,1239114..1239320,1239354..1239465,1239512..1239595,1239635..1240181))	Theileria parva strain Muguga	3501234
TpMuguga_04g00629	CDS	TpMuguga_04g00629	NW_876246.1	1240329	1241023	R	uncharacterized protein	complement(join(1240329..1240532,1240580..1241023))	Theileria parva strain Muguga	3501223
TpMuguga_04g00630	CDS	TpMuguga_04g00630	NW_876246.1	1241389	1242417	R	uncharacterized protein	complement(1241389..1242417)	Theileria parva strain Muguga	3501224
TpMuguga_04g00631	CDS	TpMuguga_04g00631	NW_876246.1	1243083	1244267	D	PAP2 superfamily C-terminal family protein	1243083..1244267	Theileria parva strain Muguga	3501225
TpMuguga_04g02190	CDS	TpMuguga_04g02190	NW_876246.1	1244848	1245960	D	PAP2 superfamily C-terminal family protein	1244848..1245960	Theileria parva strain Muguga	86047818
TpMuguga_04g02185	CDS	ctf18	NW_876246.1	1246127	1249097	D	Rad17 cell cycle checkpoint family protein	join(1246127..1246151,1246183..1246672,1246703..1246889,1246920..1247284,1247314..1247544,1247606..1247850,1247896..1248132,1248200..1248316,1248406..1248524,1248609..1249097)	Theileria parva strain Muguga	3501226
TpMuguga_04g00633	CDS	TpMuguga_04g00633	NW_876246.1	1249182	1249986	R	putative integral membrane protein	complement(join(1249182..1249548,1249578..1249784,1249820..1249986))	Theileria parva strain Muguga	3501227
TpMuguga_04g00634	CDS	TpMuguga_04g00634	NW_876246.1	1250125	1250711	R	Optic atrophy 3 protein (OPA3) family protein	complement(join(1250125..1250263,1250296..1250372,1250410..1250578,1250617..1250711))	Theileria parva strain Muguga	3501228
TpMuguga_04g00635	CDS	TpMuguga_04g00635	NW_876246.1	1251160	1251723	D	uncharacterized protein	1251160..1251723	Theileria parva strain Muguga	3501299
TpMuguga_04g00636	CDS	iscA	NW_876246.1	1251836	1252378	D	iron-sulfur cluster assembly accessory family protein	join(1251836..1252037,1252107..1252378)	Theileria parva strain Muguga	3501300
TpMuguga_04g00637	CDS	cdc123	NW_876246.1	1252441	1254040	R	D123 family protein	complement(join(1252441..1252987,1253017..1253111,1253141..1253718,1253752..1254040))	Theileria parva strain Muguga	3501301
TpMuguga_04g00638	CDS	TpMuguga_04g00638	NW_876246.1	1254080	1254359	D	uncharacterized protein	join(1254080..1254265,1254297..1254359)	Theileria parva strain Muguga	3501302
TpMuguga_04g00639	CDS	VPS33	NW_876246.1	1254480	1256756	R	Sec1 family protein	complement(1254480..1256756)	Theileria parva strain Muguga	3501303
TpMuguga_04g00640	CDS	TpMuguga_04g00640	NW_876246.1	1256867	1257310	D	PIG-P family protein	join(1256867..1256921,1256957..1257029,1257066..1257184,1257213..1257310)	Theileria parva strain Muguga	3501304
TpMuguga_04g00641	CDS	TpMuguga_04g00641	NW_876246.1	1257330	1258428	R	uncharacterized protein	complement(join(1257330..1258022,1258055..1258269,1258362..1258428))	Theileria parva strain Muguga	3501305
TpMuguga_04g00642	CDS	TpMuguga_04g00642	NW_876246.1	1258517	1259564	R	uncharacterized protein	complement(join(1258517..1258654,1258692..1259564))	Theileria parva strain Muguga	3501320
TpMuguga_04g00643	CDS	TpMuguga_04g00643	NW_876246.1	1260135	1261555	R	GATA zinc finger family protein	complement(join(1260135..1260547,1260584..1261484,1261520..1261555))	Theileria parva strain Muguga	3501321
TpMuguga_04g00644	CDS	RAB1A	NW_876246.1	1262662	1263674	D	GTP-binding protein ypt2	join(1262662..1262684,1262773..1262845,1262878..1262925,1262957..1263004,1263038..1263133,1263164..1263295,1263324..1263392,1263421..1263461,1263542..1263600,1263631..1263674)	Theileria parva strain Muguga	3501322
TpMuguga_04g00645	CDS	TpMuguga_04g00645	NW_876246.1	1263777	1266443	R	Protein kinase domain protein	complement(join(1263777..1263965,1264029..1264088,1264181..1264305,1264336..1264419,1264505..1266443))	Theileria parva strain Muguga	3501323
TpMuguga_04g00646	CDS	TpMuguga_04g00646	NW_876246.1	1266851	1269912	D	Hsp90 family protein	join(1266851..1267549,1267625..1267942,1268118..1268315,1268386..1269912)	Theileria parva strain Muguga	3501324
TpMuguga_04g00647	CDS	TpMuguga_04g00647	NW_876246.1	1270171	1272571	D	uncharacterized protein	join(1270171..1271557,1271589..1272571)	Theileria parva strain Muguga	3501325
TpMuguga_04g00648	CDS	polr3a	NW_876246.1	1272755	1278481	D	RNA polymerase Rpb1 domain 5 protein	join(1272755..1273148,1273221..1273439,1273496..1273803,1273889..1273972,1274003..1274186,1274258..1275936,1276039..1276264,1276342..1276838,1276899..1277498,1277707..1278036,1278149..1278481)	Theileria parva strain Muguga	3501188
TpMuguga_04g00649	CDS	TpMuguga_04g00649	NW_876246.1	1278609	1280409	R	GPI transamidase subunit Gpi16	complement(join(1278609..1278718,1278759..1280409))	Theileria parva strain Muguga	3501189
TpMuguga_04g00924	CDS	TpMuguga_04g00924	NW_876246.1	1280589	1281701	D	ribosomal protein S15	join(1280589..1280892,1280928..1281136,1281182..1281310,1281354..1281403,1281434..1281616,1281677..1281701)	Theileria parva strain Muguga	3501190
TpMuguga_04g00925	CDS	TpMuguga_04g00925	NW_876246.1	1281730	1283660	D	uncharacterized protein	join(1281730..1282434,1282479..1282714,1282793..1283101,1283187..1283531,1283597..1283660)	Theileria parva strain Muguga	3501191
TpMuguga_04g00651	CDS	TpMuguga_04g00651	NW_876246.1	1283808	1284173	D	putative integral membrane protein	join(1283808..1284078,1284109..1284173)	Theileria parva strain Muguga	3501192
TpMuguga_04g00652	CDS	RH50	NW_876246.1	1284516	1286850	R	DEAD/DEAH box helicase family protein	complement(join(1284516..1285548,1285652..1286522,1286553..1286850))	Theileria parva strain Muguga	3501193
TpMuguga_04g02370	CDS	TpMuguga_04g02370	NW_876246.1	1287104	1287786	D	uncharacterized protein	join(1287104..1287207,1287237..1287266,1287297..1287369,1287400..1287480,1287513..1287573,1287605..1287666,1287697..1287786)	Theileria parva strain Muguga	86047832
TpMuguga_04g00653	CDS	TpMuguga_04g00653	NW_876246.1	1288140	1289591	D	putative integral membrane protein	1288140..1289591	Theileria parva strain Muguga	3501175
TpMuguga_04g00654	CDS	TpMuguga_04g00654	NW_876246.1	1289978	1291978	D	putative integral membrane protein	join(1289978..1290287,1290513..1291978)	Theileria parva strain Muguga	3501176
TpMuguga_04g00655	CDS	TpMuguga_04g00655	NW_876246.1	1292333	1293835	D	Tpr-like protein	1292333..1293835	Theileria parva strain Muguga	3501177
TpMuguga_04g00656	CDS	TpMuguga_04g00656	NW_876246.1	1294317	1295894	D	Tpr-like protein	1294317..1295894	Theileria parva strain Muguga	3501178
TpMuguga_04g00657	CDS	TpMuguga_04g00657	NW_876246.1	1296280	1297710	D	Tpr-like protein	1296280..1297710	Theileria parva strain Muguga	3501179
TpMuguga_04g00658	CDS	TpMuguga_04g00658	NW_876246.1	1297936	1300677	R	putative ATPase of the ABC class family protein	complement(join(1297936..1298031,1298061..1298090,1298122..1298174,1298209..1298261,1298300..1298480,1298513..1298573,1298656..1299168,1299198..1299283,1299314..1299380,1299410..1299513,1299563..1299933,1299962..1300106,1300173..1300677))	Theileria parva strain Muguga	3501180
TpMuguga_04g00659	CDS	HD6	NW_876246.1	1301360	1302622	D	casein kinase II subunit alpha	1301360..1302622	Theileria parva strain Muguga	3501181
TpMuguga_04g00660	CDS	scsA	NW_876246.1	1302855	1304154	D	succinyl-CoA synthetase subunit alpha	join(1302855..1302893,1302931..1303035,1303087..1303224,1303289..1303562,1303611..1303772,1303850..1303981,1304015..1304154)	Theileria parva strain Muguga	3501150
TpMuguga_04g00661	CDS	RTCB	NW_876246.1	1304315	1306188	D	tRNA-splicing ligase RtcB-like protein	join(1304315..1304591,1304635..1304862,1304891..1305087,1305148..1305528,1305586..1305799,1305853..1305935,1306008..1306082,1306120..1306188)	Theileria parva strain Muguga	3501151
TpMuguga_04g00662	CDS	TpMuguga_04g00662	NW_876246.1	1306527	1307463	D	putative integral membrane protein	join(1306527..1306569,1306613..1306740,1306838..1307412,1307451..1307463)	Theileria parva strain Muguga	3501152
TpMuguga_04g00663	CDS	RIN1	NW_876246.1	1307513	1309378	R	TIP49 C-terminus family protein	complement(join(1307513..1307773,1307806..1307910,1308018..1308266,1308340..1308500,1308534..1309010,1309075..1309378))	Theileria parva strain Muguga	3501153
TpMuguga_04g00664	CDS	CAPN7	NW_876246.1	1309898	1313010	D	Calpain family cysteine protease family protein	join(1309898..1310849,1310882..1311051,1311133..1311829,1311965..1313010)	Theileria parva strain Muguga	3501154
TpMuguga_04g00665	CDS	Trrap	NW_876246.1	1313227	1326181	R	FAT domain protein	complement(join(1313227..1315612,1315804..1316008,1316137..1316532,1316644..1316953,1317017..1318315,1318415..1320671,1320705..1320796,1320901..1321653,1321733..1322063,1322110..1324643,1324699..1324984,1325116..1325244,1325348..1325441,1325472..1325600,1325633..1326019,1326064..1326181))	Theileria parva strain Muguga	3501008
TpMuguga_04g00666	CDS	Plrg1	NW_876246.1	1326594	1328159	D	WD domain G-beta repeat protein	1326594..1328159	Theileria parva strain Muguga	3501009
TpMuguga_04g02330	CDS	TpMuguga_04g02330	NW_876246.1	1328332	1328859	R	putative integral membrane protein	complement(1328332..1328859)	Theileria parva strain Muguga	86047828
TpMuguga_04g02090	CDS	TpMuguga_04g02090	NW_876246.1	1329574	1329962	D	Rab5-interacting protein (Rab5ip) family protein	join(1329574..1329633,1329666..1329893,1329924..1329962)	Theileria parva strain Muguga	86047808
TpMuguga_04g02670	CDS	TpMuguga_04g02670	NW_876246.1	1330012	1331529	R	uncharacterized protein	complement(join(1330012..1330889,1330921..1331262,1331295..1331372,1331402..1331450,1331482..1331529))	Theileria parva strain Muguga	3501010
TpMuguga_04g02285	CDS	TpMuguga_04g02285	NW_876246.1	1332649	1333092	R	HCNGP-like family protein	complement(join(1332649..1332704,1332740..1332848,1332887..1332985,1333021..1333092))	Theileria parva strain Muguga	86047825
TpMuguga_04g00668	CDS	TpMuguga_04g00668	NW_876246.1	1333200	1334753	R	uncharacterized protein	complement(join(1333200..1333211,1333241..1333336,1333388..1333583,1333634..1333821,1333882..1333950,1333981..1334076,1334107..1334251,1334281..1334464,1334517..1334618,1334654..1334753))	Theileria parva strain Muguga	3501012
TpMuguga_04g00669	CDS	rbx-1	NW_876246.1	1334933	1335275	R	RING-box protein 1B	complement(join(1334933..1335103,1335141..1335275))	Theileria parva strain Muguga	3500774
TpMuguga_04g00670	CDS	THOC3	NW_876246.1	1335507	1336768	D	WD domain G-beta repeat protein	join(1335507..1335887,1335917..1336768)	Theileria parva strain Muguga	3500775
TpMuguga_04g00671	CDS	TpMuguga_04g00671	NW_876246.1	1336790	1338385	D	putative integral membrane protein	join(1336790..1336845,1336878..1336938,1336957..1337066,1337115..1337181,1337211..1337262,1337293..1337341,1337398..1337490,1337522..1337665,1337696..1337739,1337771..1337796,1337830..1337988,1338029..1338119,1338156..1338227,1338270..1338385)	Theileria parva strain Muguga	3500776
TpMuguga_04g00672	CDS	TpMuguga_04g00672	NW_876246.1	1338473	1340175	D	RAP domain protein	join(1338473..1339128,1339161..1339356,1339387..1339531,1339563..1339620,1339651..1339754,1339785..1339977,1340020..1340089,1340125..1340175)	Theileria parva strain Muguga	3500777
TpMuguga_04g02160	CDS	TpMuguga_04g02160	NW_876246.1	1340216	1340816	D	EF hand family protein	join(1340216..1340245,1340286..1340421,1340466..1340633,1340664..1340766,1340798..1340816)	Theileria parva strain Muguga	3500778
TpMuguga_04g00675	CDS	TpMuguga_04g00675	NW_876246.1	1341198	1341509	D	Core histone H2A/H2B/H3/H4 family protein	1341198..1341509	Theileria parva strain Muguga	3500683
TpMuguga_04g00676	CDS	TPI	NW_876246.1	1341685	1342945	D	Triosephosphate isomerase family protein	join(1341685..1341810,1341858..1342136,1342166..1342318,1342349..1342411,1342442..1342517,1342549..1342604,1342634..1342945)	Theileria parva strain Muguga	3500684
TpMuguga_04g00677	CDS	TpMuguga_04g00677	NW_876246.1	1343262	1343573	D	Core histone H2A/H2B/H3/H4 family protein	1343262..1343573	Theileria parva strain Muguga	3500685
TpMuguga_04g00678	CDS	CPK4	NW_876246.1	1343781	1345322	R	Calcium-dependent protein kinase 4	complement(1343781..1345322)	Theileria parva strain Muguga	3500686
TpMuguga_04g00679	CDS	CAL	NW_876246.1	1346351	1347064	R	Caltractin	complement(join(1346351..1346505,1346537..1346581,1346614..1346761,1346792..1347064))	Theileria parva strain Muguga	3500687
TpMuguga_04g00680	CDS	RpS4	NW_876246.1	1347787	1348678	D	40S ribosomal protein S4	join(1347787..1347789,1347893..1348678)	Theileria parva strain Muguga	3500688
TpMuguga_04g00681	CDS	CML6	NW_876246.1	1348734	1349713	R	EF-hand domain pair family protein	complement(join(1348734..1348885,1348922..1349086,1349117..1349177,1349222..1349713))	Theileria parva strain Muguga	3500689
TpMuguga_04g00682	CDS	TpMuguga_04g00682	NW_876246.1	1350127	1352262	R	putative integral membrane protein	complement(1350127..1352262)	Theileria parva strain Muguga	3500534
TpMuguga_04g00683	CDS	Hspa5	NW_876246.1	1353002	1355246	R	Tp29; 78 kDa glucose-regulated protein	complement(join(1353002..1353522,1353609..1353773,1353836..1354867,1354959..1355108,1355147..1355246))	Theileria parva strain Muguga	3500535
TpMuguga_04g02135	CDS	TpMuguga_04g02135	NW_876246.1	1355865	1356179	R	uncharacterized protein	complement(1355865..1356179)	Theileria parva strain Muguga	86047813
TpMuguga_04g02245	CDS	TpMuguga_04g02245	NW_876246.1	1356517	1356777	D	putative integral membrane protein	join(1356517..1356700,1356740..1356777)	Theileria parva strain Muguga	86047822
TpMuguga_04g02630	CDS	TpMuguga_04g02630	NW_876246.1	1356819	1358586	D	uncharacterized protein	join(1356819..1356911,1356941..1357035,1357065..1357155,1357185..1357336,1357368..1357465,1357494..1357549,1357610..1357885,1357918..1357968,1358006..1358085,1358150..1358206,1358238..1358390,1358421..1358479,1358534..1358586)	Theileria parva strain Muguga	3500538
TpMuguga_04g00687	CDS	ttc4	NW_876246.1	1358732	1360180	R	Tetratricopeptide repeat family protein	complement(join(1358732..1358872,1358901..1359030,1359077..1359173,1359244..1359289,1359329..1359587,1359620..1359686,1359722..1359869,1359948..1360036,1360075..1360180))	Theileria parva strain Muguga	3500539
TpMuguga_04g00688	CDS	dnaJ	NW_876246.1	1360243	1362108	R	DnaJ domain protein	complement(join(1360243..1360374,1360404..1360502,1360568..1360777,1360808..1360878,1360913..1361096,1361131..1361540,1361685..1362108))	Theileria parva strain Muguga	3500490
TpMuguga_04g00689	CDS	TpMuguga_04g00689	NW_876246.1	1362318	1363370	R	Acetyltransferase (GNAT) family protein	complement(join(1362318..1362364,1362452..1363370))	Theileria parva strain Muguga	3500491
TpMuguga_04g00690	CDS	gpmA2	NW_876246.1	1363961	1364908	D	phosphoglycerate mutase 1 family protein	join(1363961..1363988,1364029..1364110,1364140..1364280,1364310..1364599,1364630..1364793,1364849..1364908)	Theileria parva strain Muguga	3500492
TpMuguga_04g02620	CDS	TpMuguga_04g02620	NW_876246.1	1365184	1365491	D	putative integral membrane protein	join(1365184..1365348,1365381..1365433,1365464..1365491)	Theileria parva strain Muguga	86047848
TpMuguga_04g00691	CDS	abhd17c	NW_876246.1	1365600	1366789	R	Alpha/beta hydrolase family protein	complement(join(1365600..1366674,1366704..1366789))	Theileria parva strain Muguga	3500493
TpMuguga_04g00692	CDS	TpMuguga_04g00692	NW_876246.1	1366820	1370956	R	uncharacterized protein	complement(1366820..1370956)	Theileria parva strain Muguga	3500494
TpMuguga_04g00693	CDS	TpMuguga_04g00693	NW_876246.1	1371680	1372375	D	uncharacterized protein	join(1371680..1371946,1371977..1372375)	Theileria parva strain Muguga	3500495
TpMuguga_04g02250	CDS	TpMuguga_04g02250	NW_876246.1	1372382	1374373	R	Sel1 repeat family protein	complement(join(1372382..1372804,1372834..1373972,1374003..1374072,1374104..1374161,1374196..1374238,1374274..1374373))	Theileria parva strain Muguga	86047823
TpMuguga_04g02040	CDS	TpMuguga_04g02040	NW_876246.1	1374504	1375669	R	uncharacterized protein	complement(join(1374504..1374518,1374557..1374613,1374646..1374818,1374848..1375074,1375107..1375669))	Theileria parva strain Muguga	3500723
TpMuguga_04g00696	CDS	TpMuguga_04g00696	NW_876246.1	1376050	1378103	D	SART-1 family protein	join(1376050..1377125,1377229..1377317,1377350..1377498,1377579..1377713,1377776..1377872,1377985..1378103)	Theileria parva strain Muguga	3500724
TpMuguga_04g00697	CDS	TpMuguga_04g00697	NW_876246.1	1378172	1380281	R	BSD domain protein	complement(join(1378172..1378300,1378335..1378495,1378557..1378647,1378716..1378928,1378958..1379010,1379043..1379237,1379269..1379634,1379664..1380044,1380083..1380281))	Theileria parva strain Muguga	3500725
TpMuguga_04g02530	CDS	TpMuguga_04g02530	NW_876246.1	1380351	1381524	R	Tudor domain protein	complement(join(1380351..1380509,1380544..1380771,1380803..1380899,1380931..1381073,1381105..1381175,1381206..1381277,1381306..1381459,1381492..1381524))	Theileria parva strain Muguga	3500727
TpMuguga_04g00700	CDS	ENO	NW_876246.1	1381851	1383215	D	phosphopyruvate hydratase	join(1381851..1381890,1381927..1383215)	Theileria parva strain Muguga	3500925
TpMuguga_04g00701	CDS	TpMuguga_04g00701	NW_876246.1	1383528	1384199	D	uncharacterized protein	1383528..1384199	Theileria parva strain Muguga	3500926
TpMuguga_04g00702	CDS	TpMuguga_04g00702	NW_876246.1	1384437	1384937	D	B-block binding subunit of TFIIIC family protein	join(1384437..1384583,1384617..1384937)	Theileria parva strain Muguga	3500927
TpMuguga_04g00703	CDS	TpMuguga_04g00703	NW_876246.1	1385047	1389552	D	uncharacterized protein	join(1385047..1385636,1385697..1389552)	Theileria parva strain Muguga	3500928
TpMuguga_04g00704	CDS	TpMuguga_04g00704	NW_876246.1	1389617	1389787	D	uncharacterized protein	1389617..1389787	Theileria parva strain Muguga	3500929
TpMuguga_04g00705	CDS	ASMTL	NW_876246.1	1389826	1390648	D	Maf-like family protein	join(1389826..1390161,1390203..1390473,1390506..1390648)	Theileria parva strain Muguga	3500930
TpMuguga_04g00706	CDS	TpMuguga_04g00706	NW_876246.1	1390833	1395163	D	Translation initiation factor eIF3 subunit 135 family protein	join(1390833..1391106,1391140..1391401,1391431..1391591,1391621..1391858,1391890..1392423,1392454..1392606,1392636..1392728,1392759..1393039,1393069..1393437,1393467..1393648,1393681..1393874,1393905..1394100,1394132..1394530,1394560..1394756,1394790..1394906,1394938..1395163)	Theileria parva strain Muguga	3500931
TpMuguga_04g00708	CDS	TpMuguga_04g00708	NW_876246.1	1395255	1399224	D	putative integral membrane protein	join(1395255..1398513,1398544..1398945,1398977..1399224)	Theileria parva strain Muguga	3501052
TpMuguga_04g02495	CDS	DBP8	NW_876246.1	1399321	1401386	D	DEAD/DEAH box helicase family protein	join(1399321..1399977,1400006..1400079,1400110..1400167,1400198..1400285,1400317..1400387,1400418..1400554,1400585..1400676,1400707..1400825,1400855..1400987,1401021..1401076,1401107..1401167,1401197..1401260,1401293..1401386)	Theileria parva strain Muguga	3501054
TpMuguga_04g00711	CDS	RPLP1	NW_876246.1	1401823	1402176	D	60S acidic ribosomal protein P1	1401823..1402176	Theileria parva strain Muguga	3501055
TpMuguga_04g00712	CDS	TpMuguga_04g00712	NW_876246.1	1402351	1402856	D	Cytochrome c family protein	join(1402351..1402489,1402527..1402662,1402694..1402856)	Theileria parva strain Muguga	3501242
TpMuguga_04g00713	CDS	TpMuguga_04g00713	NW_876246.1	1402973	1404166	R	uncharacterized protein	complement(join(1402973..1403292,1403323..1404166))	Theileria parva strain Muguga	3501243
TpMuguga_04g00714	CDS	vapA	NW_876246.1	1404943	1407124	D	V-type ATPase A subunit	join(1404943..1405000,1405066..1405194,1405279..1405564,1405598..1405775,1405807..1405917,1405948..1406332,1406408..1406908,1406940..1407124)	Theileria parva strain Muguga	3501244
TpMuguga_04g00715	CDS	TpMuguga_04g00715	NW_876246.1	1407135	1407832	R	GYF domain protein	complement(join(1407135..1407548,1407578..1407721,1407752..1407832))	Theileria parva strain Muguga	3501245
TpMuguga_04g00716	CDS	TpMuguga_04g00716	NW_876246.1	1408261	1411161	D	AAA domain protein	join(1408261..1408539,1408570..1410877,1410911..1411065,1411102..1411161)	Theileria parva strain Muguga	3501246
TpMuguga_04g00717	CDS	TpMuguga_04g00717	NW_876246.1	1411211	1411943	R	Acetyltransferase (GNAT) family protein	complement(join(1411211..1411452,1411479..1411658,1411697..1411943))	Theileria parva strain Muguga	3501247
TpMuguga_04g00718	CDS	TpMuguga_04g00718	NW_876246.1	1412167	1413369	D	putative integral membrane protein	1412167..1413369	Theileria parva strain Muguga	3501255
TpMuguga_04g00719	CDS	bkdA	NW_876246.1	1413632	1415208	R	Dehydrogenase E1 component family protein	complement(join(1413632..1413715,1413746..1413927,1413959..1414050,1414083..1414187,1414219..1414569,1414599..1414791,1414821..1415208))	Theileria parva strain Muguga	3501256
TpMuguga_04g00720	CDS	TpMuguga_04g00720	NW_876246.1	1415621	1416553	D	uncharacterized protein	join(1415621..1416354,1416385..1416553)	Theileria parva strain Muguga	3501257
TpMuguga_04g00722	CDS	TpMuguga_04g00722	NW_876246.1	1416550	1417495	R	Mitochondrial ribosomal subunit family protein	complement(join(1416550..1416596,1416626..1416741,1416776..1416911,1416942..1417050,1417079..1417217,1417251..1417495))	Theileria parva strain Muguga	3501259
TpMuguga_04g00723	CDS	TpMuguga_04g00723	NW_876246.1	1417862	1419184	D	uncharacterized protein	join(1417862..1418737,1418768..1418833,1418865..1419031,1419064..1419106,1419143..1419184)	Theileria parva strain Muguga	3501260
TpMuguga_04g00724	CDS	TpMuguga_04g00724	NW_876246.1	1419437	1419853	D	or RNP domain; RBD; RRM; RNA recognition motif family protein	join(1419437..1419574,1419691..1419771,1419800..1419853)	Theileria parva strain Muguga	3501261
TpMuguga_04g00725	CDS	Slc1a3	NW_876246.1	1420044	1421435	R	Sodium:dicarboxylate symporter family protein	complement(1420044..1421435)	Theileria parva strain Muguga	3501292
TpMuguga_04g00726	CDS	TpMuguga_04g00726	NW_876246.1	1421781	1423006	R	putative integral membrane protein	complement(join(1421781..1422142,1422173..1422634,1422664..1423006))	Theileria parva strain Muguga	3501293
TpMuguga_04g00727	CDS	DHH1	NW_876246.1	1423195	1425615	D	DEAD/DEAH box helicase family protein	join(1423195..1423318,1423355..1425615)	Theileria parva strain Muguga	3501294
TpMuguga_04g00728	CDS	TAF14B	NW_876246.1	1425713	1426648	R	uncharacterized protein	complement(join(1425713..1425759,1425789..1425867,1425898..1426013,1426045..1426195,1426226..1426344,1426375..1426507,1426568..1426648))	Theileria parva strain Muguga	3501295
TpMuguga_04g02660	CDS	TpMuguga_04g02660	NW_876246.1	1426895	1428157	D	uncharacterized protein	join(1426895..1427461,1427500..1427745,1427778..1427813,1427846..1427915,1427964..1428157)	Theileria parva strain Muguga	3501297
TpMuguga_04g00731	CDS	Atp6v0a1	NW_876246.1	1428607	1431417	D	V-type ATPase 116kDa subunit family protein	1428607..1431417	Theileria parva strain Muguga	3501298
TpMuguga_04g00732	CDS	engB	NW_876246.1	1431448	1433080	R	ribosome biogenesis GTP-binding protein YsxC	complement(join(1431448..1431704,1431816..1432642,1432731..1433080))	Theileria parva strain Muguga	3501056
TpMuguga_04g00733	CDS	rplC	NW_876246.1	1433086	1434179	R	50S ribosomal protein L3	complement(join(1433086..1433866,1433917..1434179))	Theileria parva strain Muguga	3501057
TpMuguga_04g00734	CDS	TpMuguga_04g00734	NW_876246.1	1434325	1435741	R	uncharacterized protein	complement(join(1434325..1434411,1434446..1434697,1434729..1434857,1434889..1434999,1435044..1435194,1435224..1435519,1435549..1435645,1435683..1435741))	Theileria parva strain Muguga	3501058
TpMuguga_04g00735	CDS	nup98	NW_876246.1	1436026	1439103	D	Nucleoporin autopeptidase family protein	1436026..1439103	Theileria parva strain Muguga	3501059
TpMuguga_04g00736	CDS	RPS21	NW_876246.1	1439360	1439703	D	Ribosomal protein S21e	join(1439360..1439473,1439569..1439703)	Theileria parva strain Muguga	3501060
TpMuguga_04g00737	CDS	TpMuguga_04g00737	NW_876246.1	1439733	1440254	R	Mitochondrial large subunit ribosomal protein (Img2) family protein	complement(join(1439733..1439739,1439801..1439916,1439962..1440063,1440129..1440254))	Theileria parva strain Muguga	3501061
TpMuguga_04g00738	CDS	AMPP	NW_876246.1	1440333	1442700	R	Metallopeptidase family M24 family protein	complement(join(1440333..1440467,1440499..1440909,1440996..1441149,1441181..1441251,1441309..1441389,1441419..1441508,1441538..1441718,1441750..1441821,1441854..1441954,1441984..1442240,1442271..1442377,1442408..1442700))	Theileria parva strain Muguga	3500824
TpMuguga_04g00739	CDS	nip-1	NW_876246.1	1443154	1446009	D	Eukaryotic translation initiation factor 3 subunit 8 N-terminus family protein	1443154..1446009	Theileria parva strain Muguga	3500825
TpMuguga_04g00740	CDS	VARS	NW_876246.1	1446215	1449812	R	valine--tRNA ligase	complement(join(1446215..1446382,1446420..1446575,1446741..1447250,1447413..1448923,1449062..1449279,1449313..1449507,1449538..1449757,1449791..1449812))	Theileria parva strain Muguga	3500826
TpMuguga_04g02355	CDS	TpMuguga_04g02355	NW_876246.1	1450314	1453822	D	putative integral membrane protein	join(1450314..1451267,1451305..1451825,1451892..1452093,1452186..1453381,1453507..1453822)	Theileria parva strain Muguga	3500828
TpMuguga_04g00744	CDS	TpMuguga_04g00744	NW_876246.1	1454483	1456155	R	uncharacterized protein	complement(join(1454483..1454845,1454875..1454929,1454959..1455011,1455042..1455085,1455151..1455218,1455263..1455396,1455429..1455481,1455512..1455647,1455678..1455726,1455766..1455807,1455840..1455890,1455956..1456155))	Theileria parva strain Muguga	3500655
TpMuguga_04g02280	CDS	TpMuguga_04g02280	NW_876246.1	1456362	1458019	D	Rad9 family protein	join(1456362..1456640,1456672..1456869,1456899..1457051,1457081..1457189,1457219..1457290,1457359..1457535,1457566..1457612,1457667..1457696,1457728..1457882,1457916..1457956,1458000..1458019)	Theileria parva strain Muguga	3500656
TpMuguga_04g02665	CDS	rimM	NW_876246.1	1458046	1459409	D	16S rRNA processing protein RimM	join(1458046..1458112,1458143..1458756,1458843..1459409)	Theileria parva strain Muguga	86047851
TpMuguga_04g00746	CDS	TpMuguga_04g00746	NW_876246.1	1459441	1460979	R	uncharacterized protein	complement(join(1459441..1459644,1459697..1459856,1459913..1460141,1460252..1460494,1460616..1460979))	Theileria parva strain Muguga	3500657
TpMuguga_04g00747	CDS	TpMuguga_04g00747	NW_876246.1	1461136	1463142	R	uncharacterized protein	complement(1461136..1463142)	Theileria parva strain Muguga	3500658
TpMuguga_04g00748	CDS	TpMuguga_04g00748	NW_876246.1	1463635	1464589	R	ribosomal protein S2	complement(join(1463635..1464393,1464524..1464589))	Theileria parva strain Muguga	3500659
TpMuguga_04g00749	CDS	TpMuguga_04g00749	NW_876246.1	1465053	1465388	R	Protein phosphatase inhibitor family protein	complement(join(1465053..1465108,1465163..1465388))	Theileria parva strain Muguga	3500517
TpMuguga_04g00750	CDS	TpMuguga_04g00750	NW_876246.1	1465662	1466378	D	uncharacterized protein	join(1465662..1465725,1465867..1466378)	Theileria parva strain Muguga	3500518
TpMuguga_04g00751	CDS	U2SURP	NW_876246.1	1466590	1469482	D	or RNP domain; RBD; RRM; RNA recognition motif family protein	join(1466590..1466649,1466690..1466860,1466915..1467032,1467089..1467160,1467192..1467682,1467768..1467816,1467848..1467899,1467929..1468069,1468119..1468326,1468383..1468506,1468540..1468649,1468731..1468785,1468816..1468919,1468989..1469120,1469177..1469482)	Theileria parva strain Muguga	3500519
TpMuguga_04g00752	CDS	TpMuguga_04g00752	NW_876246.1	1469582	1470070	R	Tp30; Ribosomal protein S27a family protein	complement(1469582..1470070)	Theileria parva strain Muguga	3500520
TpMuguga_04g00753	CDS	TpMuguga_04g00753	NW_876246.1	1470621	1472060	D	U1 zinc finger family protein	join(1470621..1470695,1470771..1471095,1471172..1471300,1471371..1471963,1471998..1472060)	Theileria parva strain Muguga	3500521
TpMuguga_04g00754	CDS	TpMuguga_04g00754	NW_876246.1	1472155	1473878	D	uncharacterized protein	join(1472155..1472278,1472366..1473194,1473235..1473324,1473357..1473546,1473579..1473878)	Theileria parva strain Muguga	3500522
TpMuguga_04g00755	CDS	ndx-2	NW_876246.1	1473928	1474974	R	NUDIX domain protein	complement(join(1473928..1474004,1474064..1474118,1474151..1474249,1474284..1474369,1474411..1474557,1474626..1474775,1474836..1474974))	Theileria parva strain Muguga	3500473
TpMuguga_04g00756	CDS	TpMuguga_04g00756	NW_876246.1	1475342	1479471	D	SAC3/GANP/Nin1/mts3/eIF-3 p25 family protein	join(1475342..1475381,1475461..1475580,1475645..1479471)	Theileria parva strain Muguga	3500474
TpMuguga_04g00757	CDS	TpMuguga_04g00757	NW_876246.1	1479773	1480959	D	Dcp1-like decapping family protein	join(1479773..1479852,1479966..1480146,1480224..1480409,1480504..1480959)	Theileria parva strain Muguga	3500475
TpMuguga_04g00758	CDS	TpMuguga_04g00758	NW_876246.1	1481016	1483395	D	NACHT domain protein	join(1481016..1481097,1481216..1481352,1481391..1481464,1481517..1481593,1481625..1481683,1481740..1481940,1482032..1482369,1482434..1482532,1482569..1482635,1482668..1482787,1482847..1482948,1482978..1483061,1483159..1483267,1483301..1483395)	Theileria parva strain Muguga	3500476
TpMuguga_04g00759	CDS	SPT14	NW_876246.1	1483392	1485354	R	Phosphatidylinositol N-acetylglucosaminyltransferase subunit A	complement(join(1483392..1483452,1483505..1483574,1483606..1483693,1483726..1483767,1483848..1483964,1483999..1484054,1484089..1484184,1484216..1484293,1484371..1484527,1484609..1484731,1484762..1484881,1484999..1485198,1485237..1485354))	Theileria parva strain Muguga	3500477
TpMuguga_04g02070	CDS	TpMuguga_04g02070	NW_876246.1	1485545	1488120	R	uncharacterized protein	complement(join(1485545..1485567,1485680..1486315,1486385..1486502,1486535..1486653,1486725..1486943,1487005..1487181,1487238..1487427,1487477..1487646,1487679..1487761,1487839..1487933,1488073..1488120))	Theileria parva strain Muguga	3501379
TpMuguga_04g02615	CDS	psmd11	NW_876246.1	1488273	1490051	R	PCI domain protein	complement(1488273..1490051)	Theileria parva strain Muguga	86047847
TpMuguga_04g02310	CDS	TpMuguga_04g02310	NW_876246.1	1490338	1491210	R	uncharacterized protein	complement(join(1490338..1490379,1490434..1490503,1490631..1490731,1490771..1490967,1491001..1491112,1491145..1491210))	Theileria parva strain Muguga	3501382
TpMuguga_04g00764	CDS	DER2.1	NW_876246.1	1491623	1492535	D	Der1-like family protein	join(1491623..1491986,1492087..1492314,1492345..1492535)	Theileria parva strain Muguga	3501383
TpMuguga_04g00765	CDS	TpMuguga_04g00765	NW_876246.1	1492602	1494009	R	YagE family protein	complement(join(1492602..1492691,1492726..1492801,1492830..1492941,1492972..1493044,1493074..1493127,1493162..1493236,1493271..1493334,1493364..1493423,1493456..1493532,1493574..1493641,1493715..1493814,1493864..1493935,1493965..1494009))	Theileria parva strain Muguga	3501384
TpMuguga_04g00766	CDS	sqd	NW_876246.1	1494598	1496346	R	or RNP domain; RBD; RRM; RNA recognition motif family protein	complement(join(1494598..1494701,1494776..1495414,1495508..1495658,1495705..1495868,1495898..1495975,1496037..1496346))	Theileria parva strain Muguga	3501385
TpMuguga_04g00767	CDS	USP14	NW_876246.1	1496653	1498497	R	Ubiquitin carboxyl-terminal hydrolase family protein	complement(join(1496653..1497138,1497169..1497642,1497676..1497701,1497736..1497790,1497821..1498018,1498099..1498327,1498385..1498497))	Theileria parva strain Muguga	3501386
TpMuguga_04g02325	CDS	TpMuguga_04g02325	NW_876246.1	1498772	1500100	D	uncharacterized protein	join(1498772..1498789,1498867..1498980,1499010..1499192,1499227..1499476,1499507..1499566,1499660..1499757,1499789..1500100)	Theileria parva strain Muguga	3501388
TpMuguga_04g00770	CDS	METAP1	NW_876246.1	1500233	1501468	R	metallopeptidase family protein M24	complement(join(1500233..1500378,1500408..1500455,1500486..1500657,1500687..1500757,1500787..1500876,1500906..1501025,1501067..1501279,1501330..1501468))	Theileria parva strain Muguga	3501389
TpMuguga_04g02635	CDS	TpMuguga_04g02635	NW_876246.1	1501648	1502310	D	uncharacterized protein	join(1501648..1501700,1501742..1501796,1501830..1501896,1501932..1501961,1501993..1502097,1502129..1502310)	Theileria parva strain Muguga	86047849
TpMuguga_04g00771	CDS	RPL26A	NW_876246.1	1502385	1502858	R	ribosomal protein L24	complement(join(1502385..1502782,1502843..1502858))	Theileria parva strain Muguga	3500932
TpMuguga_04g00772	CDS	corA	NW_876246.1	1504226	1505889	R	Tp10	complement(join(1504226..1504375,1504405..1504752,1504783..1505089,1505122..1505199,1505230..1505395,1505429..1505500,1505537..1505624,1505659..1505750,1505859..1505889))	Theileria parva strain Muguga	3500935
TpMuguga_04g00773	CDS	TpMuguga_04g00773	NW_876246.1	1506819	1508372	D	uncharacterized protein	1506819..1508372	Theileria parva strain Muguga	3500936
TpMuguga_04g00774	CDS	ddx27	NW_876246.1	1508632	1510772	D	DEAD/DEAH box helicase family protein	join(1508632..1508697,1508798..1508995,1509037..1509136,1509166..1509242,1509283..1509414,1509445..1509552,1509584..1509661,1509695..1509949,1509980..1510089,1510120..1510233,1510265..1510557,1510588..1510772)	Theileria parva strain Muguga	3500937
TpMuguga_04g00775	CDS	TpMuguga_04g00775	NW_876246.1	1511308	1513093	D	uncharacterized protein	join(1511308..1512585,1512617..1512746,1512777..1513093)	Theileria parva strain Muguga	3500938
TpMuguga_04g00776	CDS	trpS	NW_876246.1	1513179	1514613	R	tryptophan--tRNA ligase	complement(join(1513179..1513214,1513244..1513340,1513370..1513529,1513561..1513694,1513723..1513883,1513914..1513999,1514031..1514189,1514221..1514335,1514431..1514613))	Theileria parva strain Muguga	3501145
TpMuguga_04g02460	CDS	TOUSLED	NW_876246.1	1514873	1518219	D	Protein kinase domain protein	join(1514873..1515259,1515297..1515511,1515542..1515641,1515673..1515708,1515739..1516336,1516371..1516512,1516551..1517380,1517415..1517496,1517528..1517576,1517609..1517677,1517707..1517826,1517857..1517906,1517935..1517975,1518029..1518099,1518130..1518219)	Theileria parva strain Muguga	3501147
TpMuguga_04g00779	CDS	TpMuguga_04g00779	NW_876246.1	1518243	1518809	R	uncharacterized protein	complement(1518243..1518809)	Theileria parva strain Muguga	3501148
TpMuguga_04g00780	CDS	TpMuguga_04g00780	NW_876246.1	1519214	1522116	D	uncharacterized protein	join(1519214..1519454,1519487..1519941,1520017..1520186,1520219..1520606,1520647..1520731,1520762..1520968,1521001..1521045,1521077..1521157,1521188..1521297,1521329..1521476,1521517..1521628,1521658..1521904,1521940..1522116)	Theileria parva strain Muguga	86047797
TpMuguga_04g00781	CDS	TpMuguga_04g00781	NW_876246.1	1520782	1522253	D	uncharacterized protein	join(1520782..1520968,1521001..1521045,1521077..1521157,1521188..1521297,1521329..1521476,1521517..1521628,1521658..1521904,1521940..1522105,1522168..1522253)	Theileria parva strain Muguga	3501216
TpMuguga_04g02110	CDS	TpMuguga_04g02110	NW_876246.1	1522412	1523040	R	uncharacterized protein	complement(join(1522412..1522581,1522656..1522809,1522891..1523040))	Theileria parva strain Muguga	86047811
TpMuguga_04g02360	CDS	TpMuguga_04g02360	NW_876246.1	1523576	1523728	R	uncharacterized protein	complement(1523576..1523728)	Theileria parva strain Muguga	86047831
TpMuguga_04g00782	CDS	TpMuguga_04g00782	NW_876246.1	1524124	1525259	R	uncharacterized protein	complement(join(1524124..1524561,1525203..1525259))	Theileria parva strain Muguga	3501218
TpMuguga_04g00783	CDS	VPS26A	NW_876246.1	1525437	1526562	R	Vacuolar protein sorting-associated protein 26A	complement(join(1525437..1525681,1525712..1525947,1525979..1526108,1526141..1526206,1526236..1526332,1526365..1526481,1526560..1526562))	Theileria parva strain Muguga	3501219
TpMuguga_04g00784	CDS	TpMuguga_04g00784	NW_876246.1	1526848	1531638	R	putative integral membrane protein	complement(1526848..1531638)	Theileria parva strain Muguga	3501220
TpMuguga_04g00785	CDS	TpMuguga_04g00785	NW_876246.1	1532158	1535046	D	DNA repair helicase (rad3) family protein	1532158..1535046	Theileria parva strain Muguga	3501221
TpMuguga_04g00786	CDS	TpMuguga_04g00786	NW_876246.1	1535159	1536339	R	putative integral membrane protein	complement(join(1535159..1536036,1536066..1536339))	Theileria parva strain Muguga	3501222
TpMuguga_04g00787	CDS	TpMuguga_04g00787	NW_876246.1	1537076	1539590	R	LsmAD domain protein	complement(join(1537076..1537612,1537644..1537730,1537760..1538458,1538492..1538565,1538598..1538920,1538954..1539017,1539049..1539268,1539302..1539427,1539465..1539590))	Theileria parva strain Muguga	3501275
TpMuguga_04g00788	CDS	era	NW_876246.1	1540206	1541934	D	small GTP-binding domain protein	join(1540206..1540301,1540337..1540412,1540444..1540517,1540547..1540631,1540661..1540733,1540764..1540825,1540895..1540962,1541002..1541107,1541139..1541302,1541344..1541396,1541426..1541549,1541579..1541622,1541653..1541755,1541785..1541934)	Theileria parva strain Muguga	3501276
TpMuguga_04g00789	CDS	TpMuguga_04g00789	NW_876246.1	1542084	1543089	R	uncharacterized protein	complement(join(1542084..1542114,1542147..1542202,1542239..1542314,1542345..1542481,1542538..1542612,1542648..1542736,1542774..1542859,1542893..1543089))	Theileria parva strain Muguga	3501277
TpMuguga_04g00790	CDS	TpMuguga_04g00790	NW_876246.1	1543156	1544358	R	AP2-coincident C-terminal family protein	complement(1543156..1544358)	Theileria parva strain Muguga	3501278
TpMuguga_04g00791	CDS	PHO85	NW_876246.1	1545375	1547219	R	Protein kinase domain protein	complement(join(1545375..1545834,1545874..1546040,1546069..1546287,1546316..1546440,1546476..1546622,1546662..1546710,1546740..1547219))	Theileria parva strain Muguga	3501279
TpMuguga_04g00926	CDS	TpMuguga_04g00926	NW_876246.1	1547677	1548225	R	Trm112p-like family protein	complement(join(1547677..1547714,1547752..1547815,1547855..1547941,1547982..1548138,1548194..1548225))	Theileria parva strain Muguga	3500982
TpMuguga_04g02610	CDS	PRPF38B	NW_876246.1	1548319	1550054	R	PRP38 family protein	complement(join(1548319..1548387,1548419..1548791,1548824..1548965,1549035..1549164,1549195..1549281,1549312..1549459,1549491..1549565,1549595..1549715,1549747..1549821,1549862..1550054))	Theileria parva strain Muguga	3500984
TpMuguga_04g00794	CDS	TpMuguga_04g00794	NW_876246.1	1550555	1551459	D	putative integral membrane protein	join(1550555..1550729,1550761..1551042,1551073..1551189,1551221..1551459)	Theileria parva strain Muguga	3500985
TpMuguga_04g00795	CDS	MED36B	NW_876246.1	1551471	1552539	R	putative mediator of RNA polymerase II transcription subunit 36b	complement(join(1551471..1551595,1551627..1551858,1551888..1551997,1552028..1552151,1552185..1552384,1552429..1552479,1552533..1552539))	Theileria parva strain Muguga	3500986
TpMuguga_04g00796	CDS	PRSS12	NW_876246.1	1552672	1557263	R	LCCL domain protein	complement(join(1552672..1552818,1552853..1552908,1552944..1553045,1553081..1553167,1553204..1553714,1553744..1553853,1553885..1554028,1554057..1554164,1554194..1554268,1554299..1554373,1554403..1554562,1554596..1554647,1554690..1554954,1554986..1555085,1555115..1555197,1555229..1555430,1555462..1555562,1555594..1555655,1555688..1555754,1555786..1555827,1555857..1555925,1555956..1556021,1556054..1556202,1556234..1556824,1556854..1556937,1556969..1557035,1557104..1557263))	Theileria parva strain Muguga	3500880
TpMuguga_04g00797	CDS	cfr	NW_876246.1	1557467	1558898	R	Radical SAM superfamily protein	complement(join(1557467..1557549,1557594..1557643,1557675..1557712,1557747..1557802,1557855..1557962,1557994..1558099,1558129..1558182,1558219..1558370,1558403..1558541,1558581..1558898))	Theileria parva strain Muguga	3500881
TpMuguga_04g00798	CDS	TpMuguga_04g00798	NW_876246.1	1559719	1560619	D	uncharacterized protein	join(1559719..1560035,1560067..1560374,1560408..1560619)	Theileria parva strain Muguga	3500882
TpMuguga_04g00799	CDS	VPS29	NW_876246.1	1560699	1561379	R	Vacuolar protein sorting-associated protein 29	complement(join(1560699..1561081,1561121..1561379))	Theileria parva strain Muguga	3500883
TpMuguga_04g00800	CDS	clpC	NW_876246.1	1561500	1564473	R	AAA domain (Cdc48 subfamily) family protein	complement(join(1561500..1561698,1561757..1562632,1562663..1562793,1562824..1562936,1562967..1563111,1563142..1563263,1563298..1563496,1563527..1564032,1564062..1564473))	Theileria parva strain Muguga	3500875
TpMuguga_04g00801	CDS	TpMuguga_04g00801	NW_876246.1	1564726	1566019	R	uncharacterized protein	complement(join(1564726..1565870,1565935..1566019))	Theileria parva strain Muguga	3500876
TpMuguga_04g00802	CDS	AE7	NW_876246.1	1566527	1567314	R	MIP18 family protein	complement(join(1566527..1566576,1566652..1566753,1566786..1566870,1566911..1567063,1567096..1567314))	Theileria parva strain Muguga	3500877
TpMuguga_04g00803	CDS	TpMuguga_04g00803	NW_876246.1	1567472	1569036	R	Triose-phosphate Transporter family protein	complement(join(1567472..1567540,1567573..1567782,1567814..1567919,1567951..1568030,1568061..1568290,1568323..1568390,1568423..1568502,1568535..1568567,1568599..1569036))	Theileria parva strain Muguga	3500878
TpMuguga_04g02605	CDS	SET1	NW_876246.1	1570264	1582432	D	SET domain protein	join(1570264..1570951,1570985..1573374,1573405..1574352,1574518..1577532,1577566..1577769,1577934..1581370,1581588..1581708,1581738..1582100,1582221..1582328,1582358..1582432)	Theileria parva strain Muguga	3500879
TpMuguga_04g00806	CDS	COQ5	NW_876246.1	1582582	1583612	R	ubiE/COQ5 methyltransferase family protein	complement(join(1582582..1583207,1583318..1583612))	Theileria parva strain Muguga	3500705
TpMuguga_04g00807	CDS	Ufsp2	NW_876246.1	1583804	1586236	R	Peptidase family C78 family protein	complement(join(1583804..1583881,1583911..1584002,1584052..1584430,1584487..1584585,1584645..1585715,1585767..1586029,1586077..1586236))	Theileria parva strain Muguga	3500706
TpMuguga_04g00808	CDS	TpMuguga_04g00808	NW_876246.1	1586403	1587933	D	putative RNA methylase family UPF0020 family protein	join(1586403..1586587,1586625..1587933)	Theileria parva strain Muguga	3500707
TpMuguga_04g00809	CDS	TpMuguga_04g00809	NW_876246.1	1587930	1590233	R	uncharacterized protein	complement(join(1587930..1588180,1588214..1588324,1588387..1588474,1588521..1588808,1588871..1588933,1588961..1589134,1589171..1589271,1589385..1589632,1589663..1589948,1590007..1590066,1590128..1590233))	Theileria parva strain Muguga	3500708
TpMuguga_04g00810	CDS	YTM1	NW_876246.1	1590427	1592133	R	WD domain G-beta repeat protein	complement(join(1590427..1590549,1590625..1590909,1590941..1591057,1591089..1591155,1591186..1591232,1591273..1591366,1591397..1591513,1591544..1591664,1591694..1591830,1591881..1591966,1592020..1592133))	Theileria parva strain Muguga	3500709
TpMuguga_04g02235	CDS	SETVS	NW_876246.1	1592586	1596649	D	SET domain protein	join(1592586..1595513,1595543..1595605,1595740..1595805,1595879..1595965,1596052..1596197,1596343..1596649)	Theileria parva strain Muguga	3500667
TpMuguga_04g02125	CDS	pol2	NW_876246.1	1597015	1605787	D	DNA polymerase family B exonuclease domain protein	join(1597015..1600018,1600095..1601383,1601506..1601866,1602026..1602173,1602303..1602453,1602518..1602724,1602792..1602883,1602926..1603106,1603203..1603490,1603597..1603758,1603875..1604078,1604108..1604256,1604422..1604824,1604928..1605001,1605048..1605161,1605214..1605304,1605519..1605583,1605621..1605665,1605697..1605787)	Theileria parva strain Muguga	3500669
TpMuguga_04g00815	CDS	TpMuguga_04g00815	NW_876246.1	1605789	1606552	R	uncharacterized protein	complement(join(1605789..1605796,1605896..1605929,1605959..1605998,1606045..1606144,1606174..1606213,1606262..1606324,1606457..1606552))	Theileria parva strain Muguga	3500670
TpMuguga_04g00816	CDS	TpMuguga_04g00816	NW_876246.1	1606649	1607991	D	uncharacterized protein	join(1606649..1606770,1606813..1606903,1606946..1606999,1607154..1607214,1607244..1607283,1607315..1607394,1607424..1607475,1607506..1607568,1607598..1607626,1607655..1607731,1607760..1607838,1607870..1607991)	Theileria parva strain Muguga	3501396
TpMuguga_04g00817	CDS	TpMuguga_04g00817	NW_876246.1	1609017	1609671	R	putative integral membrane protein	complement(join(1609017..1609047,1609141..1609246,1609275..1609671))	Theileria parva strain Muguga	3501397
TpMuguga_04g00818	CDS	Prkaa2	NW_876246.1	1609975	1611825	D	Protein kinase domain protein	join(1609975..1610050,1610491..1610688,1610825..1610934,1611054..1611145,1611174..1611364,1611719..1611825)	Theileria parva strain Muguga	3501398
TpMuguga_04g00819	CDS	TpMuguga_04g00819	NW_876246.1	1612735	1614609	R	uncharacterized protein	complement(1612735..1614609)	Theileria parva strain Muguga	3501399
TpMuguga_04g00820	CDS	TpMuguga_04g00820	NW_876246.1	1615078	1617456	D	uncharacterized protein	1615078..1617456	Theileria parva strain Muguga	3501400
TpMuguga_04g00821	CDS	HAS1	NW_876246.1	1617989	1620462	R	ATP-dependent RNA helicase HAS1	complement(join(1617989..1618162,1618315..1618599,1618703..1618756,1618882..1619142,1619480..1619961,1620156..1620462))	Theileria parva strain Muguga	3500619
TpMuguga_04g00822	CDS	TpMuguga_04g00822	NW_876246.1	1620627	1623706	D	Zn-finger in Ran binding protein and others family protein	join(1620627..1622784,1623396..1623706)	Theileria parva strain Muguga	3500620
TpMuguga_04g00823	CDS	Gtf2h3	NW_876246.1	1623881	1625863	D	Transcription factor Tfb4 family protein	join(1623881..1624149,1624470..1624699,1625024..1625154,1625185..1625223,1625321..1625437,1625480..1625615,1625708..1625765,1625797..1625863)	Theileria parva strain Muguga	3500621
TpMuguga_04g00824	CDS	ERD2	NW_876246.1	1626619	1627905	R	ER lumen protein-retaining receptor	complement(join(1626619..1626965,1627054..1627232,1627760..1627905))	Theileria parva strain Muguga	3500622
TpMuguga_04g00825	CDS	TpMuguga_04g00825	NW_876246.1	1628425	1632765	R	putative integral membrane protein	complement(join(1628425..1628504,1628693..1628751,1629280..1631175,1631492..1632765))	Theileria parva strain Muguga	3500623
TpMuguga_04g00826	CDS	TpMuguga_04g00826	NW_876246.1	1633075	1634022	D	uncharacterized protein	join(1633075..1633082,1633161..1633267,1633308..1633403,1633509..1633548,1633600..1633714,1633744..1633833,1633933..1633966,1633997..1634022)	Theileria parva strain Muguga	3500624
TpMuguga_04g00827	CDS	PAC1	NW_876246.1	1634059	1635201	R	Proteasome subunit alpha type-4-A	complement(join(1634059..1634292,1634527..1634700,1634845..1635201))	Theileria parva strain Muguga	3501347
TpMuguga_04g00828	CDS	psmA7	NW_876246.1	1635650	1637108	D	Proteasome subunit alpha type-7-B	join(1635650..1635819,1635863..1635950,1636001..1636090,1636582..1636731,1636887..1637108)	Theileria parva strain Muguga	3501348
TpMuguga_04g00829	CDS	RING1A	NW_876246.1	1637388	1639023	D	RING finger protein 5	join(1637388..1637656,1637814..1637919,1638026..1638071,1638101..1638187,1638398..1638579,1638716..1638814,1638844..1638897,1638961..1639023)	Theileria parva strain Muguga	3501349
TpMuguga_04g00830	CDS	TpMuguga_04g00830	NW_876246.1	1639034	1639576	R	uncharacterized protein	complement(1639034..1639576)	Theileria parva strain Muguga	3501350
TpMuguga_04g00831	CDS	spb1	NW_876246.1	1639674	1642794	R	Spb1 domain protein	complement(join(1639674..1642127,1642372..1642555,1642658..1642794))	Theileria parva strain Muguga	3501351
TpMuguga_04g00832	CDS	Atp6v0b	NW_876246.1	1642996	1643723	R	ATP synthase subunit C family protein	complement(join(1642996..1643045,1643074..1643177,1643207..1643488,1643620..1643723))	Theileria parva strain Muguga	3501352
TpMuguga_04g00833	CDS	TpMuguga_04g00833	NW_876246.1	1643977	1644768	D	putative integral membrane protein	1643977..1644768	Theileria parva strain Muguga	3500497
TpMuguga_04g00834	CDS	TpMuguga_04g00834	NW_876246.1	1644970	1646304	D	uncharacterized protein	join(1644970..1645396,1645445..1645835,1645895..1646025,1646057..1646304)	Theileria parva strain Muguga	3500498
TpMuguga_04g00835	CDS	TpMuguga_04g00835	NW_876246.1	1647762	1649948	D	uncharacterized protein	1647762..1649948	Theileria parva strain Muguga	3500500
TpMuguga_04g00836	CDS	RPS10	NW_876246.1	1650064	1650439	R	Plectin/S10 domain protein	complement(join(1650064..1650332,1650364..1650439))	Theileria parva strain Muguga	3500501
TpMuguga_04g00837	CDS	TpMuguga_04g00837	NW_876246.1	1650960	1652556	D	uncharacterized protein	join(1650960..1651572,1651799..1652556)	Theileria parva strain Muguga	3500502
TpMuguga_04g00838	CDS	Rbm34	NW_876246.1	1652606	1653873	D	RNA-binding protein 34	join(1652606..1652951,1652983..1653074,1653115..1653267,1653298..1653357,1653389..1653488,1653520..1653560,1653591..1653668,1653709..1653873)	Theileria parva strain Muguga	3500503
TpMuguga_04g00839	CDS	TpMuguga_04g00839	NW_876246.1	1653956	1654432	D	uncharacterized protein	1653956..1654432	Theileria parva strain Muguga	3500650
TpMuguga_04g00840	CDS	TpMuguga_04g00840	NW_876246.1	1654646	1655055	D	uncharacterized protein	join(1654646..1654861,1654892..1654978,1655011..1655055)	Theileria parva strain Muguga	3500651
TpMuguga_04g00841	CDS	TpMuguga_04g00841	NW_876246.1	1655546	1655869	D	uncharacterized protein	join(1655546..1655604,1655634..1655742,1655795..1655869)	Theileria parva strain Muguga	3500652
TpMuguga_04g00842	CDS	TpMuguga_04g00842	NW_876246.1	1656162	1657918	D	uncharacterized protein	join(1656162..1656250,1656291..1656336,1656367..1656399,1657431..1657590,1657642..1657694,1657817..1657918)	Theileria parva strain Muguga	3500653
TpMuguga_04g02475	CDS	TpMuguga_04g02475	NW_876246.1	1658254	1659442	D	uncharacterized protein	join(1658254..1658458,1658498..1658551,1658618..1658644,1658677..1658763,1658792..1658867,1658900..1658946,1658977..1659021,1659057..1659442)	Theileria parva strain Muguga	3500654
TpMuguga_04g02335	CDS	TpMuguga_04g02335	NW_876246.1	1659527	1660731	D	Oligomerization domain protein	join(1659527..1659848,1659879..1660219,1660252..1660355,1660418..1660579,1660662..1660731)	Theileria parva strain Muguga	86047829
TpMuguga_04g00844	CDS	RPS7	NW_876246.1	1661019	1661675	R	40S ribosomal protein S7	complement(join(1661019..1661178,1661257..1661675))	Theileria parva strain Muguga	3500710
TpMuguga_04g00845	CDS	TpMuguga_04g00845	NW_876246.1	1662444	1664333	D	Fes/CIP4 and EFC/F-BAR domain protein	join(1662444..1663532,1663601..1663683,1663719..1663859,1663892..1664333)	Theileria parva strain Muguga	3500711
TpMuguga_04g00846	CDS	TpMuguga_04g00846	NW_876246.1	1664687	1665559	D	DnaJ domain protein	1664687..1665559	Theileria parva strain Muguga	3500712
TpMuguga_04g00847	CDS	TpMuguga_04g00847	NW_876246.1	1665598	1667126	R	Ribosomal prokaryotic L21 family protein	complement(join(1665598..1665704,1665792..1665897,1665927..1665987,1666019..1666083,1666114..1666153,1666186..1666255,1666285..1666336,1666369..1666509,1666538..1666825,1666858..1667015,1667063..1667126))	Theileria parva strain Muguga	3500713
TpMuguga_04g00848	CDS	rio2	NW_876246.1	1667489	1669067	D	RIO1 family protein	join(1667489..1667864,1667897..1668108,1668141..1668285,1668317..1668437,1668488..1668602,1668633..1668907,1668938..1669067)	Theileria parva strain Muguga	3500714
TpMuguga_04g00849	CDS	TpMuguga_04g00849	NW_876246.1	1669145	1669975	R	uncharacterized protein	complement(1669145..1669975)	Theileria parva strain Muguga	3500715
TpMuguga_04g00850	CDS	TpMuguga_04g00850	NW_876246.1	1670838	1672261	D	uncharacterized protein family (UPF0160) family protein; uncharacterized protein	join(1670838..1670873,1670905..1671163,1671194..1671209,1671238..1671553,1671585..1671628,1671666..1671690,1671720..1671824,1671855..1671946,1671987..1672057,1672091..1672182,1672217..1672261)	Theileria parva strain Muguga	3500761
TpMuguga_04g00851	CDS	TpMuguga_04g00851	NW_876246.1	1672268	1673514	R	uncharacterized protein	complement(join(1672268..1672543,1672572..1672682,1672712..1672774,1672804..1672944,1672975..1673150,1673188..1673277,1673313..1673514))	Theileria parva strain Muguga	3500762
TpMuguga_04g02585	CDS	tsaD	NW_876246.1	1673602	1675772	D	metallohydrolase glycoprotease/Kae1 family protein	join(1673602..1673945,1673980..1674119,1674151..1674365,1674401..1674540,1674572..1674694,1674723..1674847,1674909..1674998,1675028..1675607,1675637..1675772)	Theileria parva strain Muguga	3500763
TpMuguga_04g00854	CDS	TpMuguga_04g00854	NW_876246.1	1675782	1677071	R	Ribosomal protein S10p/S20e family protein	complement(1675782..1677071)	Theileria parva strain Muguga	3500765
TpMuguga_04g00855	CDS	ABCE2	NW_876246.1	1677194	1679347	R	ATP-binding cassette sub-family E member 1	complement(join(1677194..1677374,1677409..1677510,1677540..1677896,1677929..1678068,1678100..1678185,1678216..1678621,1678652..1678876,1678912..1679120,1679206..1679347))	Theileria parva strain Muguga	3500766
TpMuguga_04g00856	CDS	TpMuguga_04g00856	NW_876246.1	1679662	1680414	D	uncharacterized protein	1679662..1680414	Theileria parva strain Muguga	3500918
TpMuguga_04g00857	CDS	TpMuguga_04g00857	NW_876246.1	1680521	1680844	D	uncharacterized protein	1680521..1680844	Theileria parva strain Muguga	3500919
TpMuguga_04g00858	CDS	TpMuguga_04g00858	NW_876246.1	1680886	1681590	R	RAP domain protein	complement(1680886..1681590)	Theileria parva strain Muguga	3500920
TpMuguga_04g00859	CDS	TpMuguga_04g00859	NW_876246.1	1682134	1683432	D	uncharacterized protein	join(1682134..1682290,1682325..1682449,1682489..1682566,1682602..1682691,1682721..1682815,1682845..1682937,1682969..1683103,1683138..1683206,1683242..1683314,1683349..1683432)	Theileria parva strain Muguga	3500921
TpMuguga_04g02265	CDS	srp68	NW_876246.1	1683555	1685548	D	Signal recognition particle subunit SRP68	join(1683555..1683648,1683684..1683861,1683901..1683988,1684027..1684143,1684175..1684726,1684757..1684796,1684826..1684912,1684943..1685244,1685276..1685483,1685514..1685548)	Theileria parva strain Muguga	3500922
TpMuguga_04g00862	CDS	TpMuguga_04g00862	NW_876246.1	1685602	1686204	R	nascent polypeptide associated complex subunit alpha	complement(1685602..1686204)	Theileria parva strain Muguga	3500924
TpMuguga_04g00863	CDS	TpMuguga_04g00863	NW_876246.1	1686443	1687072	R	uncharacterized protein	complement(1686443..1687072)	Theileria parva strain Muguga	3501268
TpMuguga_04g02415	CDS	TpMuguga_04g02415	NW_876246.1	1687527	1688445	D	uncharacterized protein	join(1687527..1687895,1687928..1688008,1688043..1688090,1688129..1688204,1688240..1688319,1688359..1688445)	Theileria parva strain Muguga	3501269
TpMuguga_04g02340	CDS	rsmE	NW_876246.1	1688488	1689341	D	RNA methyltransferase family protein	join(1688488..1688711,1688743..1688824,1688856..1689341)	Theileria parva strain Muguga	3501270
TpMuguga_04g00866	CDS	TpMuguga_04g00866	NW_876246.1	1689653	1693156	R	uncharacterized protein	complement(join(1689653..1689871,1689907..1690008,1690039..1692780,1692812..1693156))	Theileria parva strain Muguga	3501271
TpMuguga_04g00867	CDS	TpMuguga_04g00867	NW_876246.1	1693846	1694364	D	uncharacterized protein	1693846..1694364	Theileria parva strain Muguga	3501272
TpMuguga_04g00868	CDS	TBCD	NW_876246.1	1694425	1698831	R	Tubulin-specific chaperone D	complement(1694425..1698831)	Theileria parva strain Muguga	3501273
TpMuguga_04g00869	CDS	TpMuguga_04g00869	NW_876246.1	1699378	1700463	R	uncharacterized protein	complement(join(1699378..1699488,1699521..1699592,1699628..1699707,1699741..1699839,1699871..1699897,1699927..1700203,1700237..1700368,1700410..1700463))	Theileria parva strain Muguga	3501274
TpMuguga_04g00870	CDS	TpMuguga_04g00870	NW_876246.1	1700498	1702605	R	uncharacterized protein	complement(join(1700498..1700563,1700593..1700630,1700660..1700714,1700770..1702605))	Theileria parva strain Muguga	3500896
TpMuguga_04g00871	CDS	FRS1	NW_876246.1	1702812	1705072	R	phenylalanine--tRNA ligase beta subunit	complement(join(1702812..1702867,1702936..1703058,1703089..1703224,1703254..1703352,1703383..1703744,1703775..1703932,1704007..1704063,1704094..1704170,1704203..1704349,1704380..1704667,1704700..1704829,1704872..1704980,1705015..1705072))	Theileria parva strain Muguga	3500897
TpMuguga_04g00872	CDS	TpMuguga_04g00872	NW_876246.1	1705488	1707233	R	AP2 domain protein	complement(1705488..1707233)	Theileria parva strain Muguga	3500898
TpMuguga_04g00873	CDS	Rabggta	NW_876246.1	1708768	1711076	R	Protein prenyltransferase alpha subunit repeat family protein	complement(join(1708768..1708927,1708961..1709026,1709057..1709176,1709209..1709352,1709384..1709506,1709540..1709899,1709929..1709988,1710020..1710059,1710089..1710189,1710228..1710450,1710503..1710642,1710673..1711076))	Theileria parva strain Muguga	3500899
TpMuguga_04g02435	CDS	GNL1	NW_876246.1	1711581	1717962	D	Sec7 domain protein	join(1711581..1711941,1711971..1712095,1712126..1712238,1712270..1712378,1712410..1717331,1717496..1717589,1717621..1717962)	Theileria parva strain Muguga	3500788
TpMuguga_04g02320	CDS	TpMuguga_04g02320	NW_876246.1	1717952	1719216	D	Elongation factor TS family protein	join(1717952..1718125,1718204..1718285,1718317..1718552,1718686..1719216)	Theileria parva strain Muguga	3500789
TpMuguga_04g00878	CDS	ULP2A	NW_876246.1	1719285	1721393	D	Ulp1 protease family C-terminal catalytic domain protein	join(1719285..1719953,1720064..1720246,1720278..1720406,1720513..1720848,1720982..1721256,1721285..1721393)	Theileria parva strain Muguga	3500790
TpMuguga_04g00879	CDS	MPI	NW_876246.1	1721534	1723009	R	Phosphomannose isomerase type I family protein	complement(join(1721534..1721791,1721825..1722060,1722139..1723009))	Theileria parva strain Muguga	3500791
TpMuguga_04g00880	CDS	Dyrk4	NW_876246.1	1723277	1725547	D	Protein kinase domain protein	join(1723277..1724567,1724664..1725547)	Theileria parva strain Muguga	3500792
TpMuguga_04g00881	CDS	Pigq	NW_876246.1	1725797	1727946	D	N-acetylglucosaminyl transferase component (Gpi1) family protein	join(1725797..1725940,1726007..1726146,1726178..1726302,1726331..1726711,1726786..1726954,1726985..1727299,1727333..1727493,1727578..1727762,1727821..1727946)	Theileria parva strain Muguga	3500580
TpMuguga_04g00882	CDS	ura2	NW_876246.1	1728126	1729632	D	dihydroorotase homodimeric type	join(1728126..1728217,1728401..1728584,1728615..1728680,1728711..1728839,1728866..1729176,1729303..1729363,1729392..1729488,1729517..1729632)	Theileria parva strain Muguga	3500581
TpMuguga_04g00883	CDS	gdh2	NW_876246.1	1729773	1733383	R	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase family protein	complement(join(1729773..1731973,1732096..1733383))	Theileria parva strain Muguga	3500582
TpMuguga_04g00884	CDS	TpMuguga_04g00884	NW_876246.1	1734332	1738870	D	putative trafficking through Golgi family protein	join(1734332..1737217,1737324..1737963,1738038..1738228,1738261..1738386,1738485..1738609,1738644..1738763,1738837..1738870)	Theileria parva strain Muguga	3500583
TpMuguga_04g00885	CDS	TpMuguga_04g00885	NW_876246.1	1739587	1740762	D	putative integral membrane protein	1739587..1740762	Theileria parva strain Muguga	3500584
TpMuguga_04g00886	CDS	ZRANB3	NW_876246.1	1741045	1743954	D	SNF2 family protein	join(1741045..1743469,1743554..1743954)	Theileria parva strain Muguga	3500585
TpMuguga_04g00887	CDS	TpMuguga_04g00887	NW_876246.1	1744084	1744734	R	uncharacterized protein	complement(1744084..1744734)	Theileria parva strain Muguga	3501360
TpMuguga_04g02680	CDS	TpMuguga_04g02680	NW_876246.1	1744905	1748769	R	S1 RNA binding domain protein	complement(join(1744905..1745250,1745280..1746074,1746105..1746935,1747015..1747086,1747115..1747206,1747347..1747495,1747580..1747671,1747707..1747930,1747960..1748006,1748038..1748311,1748401..1748482,1748561..1748769))	Theileria parva strain Muguga	3501363
TpMuguga_04g00891	CDS	HDP	NW_876246.1	1748781	1749409	R	Fasciclin domain protein	complement(join(1748781..1749172,1749202..1749409))	Theileria parva strain Muguga	3501364
TpMuguga_04g00892	CDS	nhp2l1	NW_876246.1	1750235	1750835	R	uncharacterized protein	complement(join(1750235..1750393,1750492..1750595,1750709..1750835))	Theileria parva strain Muguga	3501365
TpMuguga_04g00893	CDS	METK2	NW_876246.1	1751303	1752724	D	methionine adenosyltransferase	join(1751303..1751434,1751472..1751724,1751813..1752054,1752119..1752724)	Theileria parva strain Muguga	3500660
TpMuguga_04g00894	CDS	gatA	NW_876246.1	1753001	1754813	D	Amidase family protein	join(1753001..1753382,1753414..1753908,1753991..1754320,1754420..1754601,1754634..1754813)	Theileria parva strain Muguga	3500661
TpMuguga_04g02035	CDS	rnf-5	NW_876246.1	1755149	1755847	D	RING finger protein 5	join(1755149..1755399,1755437..1755500,1755584..1755731,1755765..1755847)	Theileria parva strain Muguga	3500662
TpMuguga_04g02030	CDS	TpMuguga_04g02030	NW_876246.1	1756001	1756613	D	EF-hand domain protein	join(1756001..1756051,1756083..1756136,1756212..1756367,1756397..1756488,1756518..1756568,1756598..1756613)	Theileria parva strain Muguga	86047802
TpMuguga_04g00896	CDS	TpMuguga_04g00896	NW_876246.1	1756630	1758310	R	putative integral membrane protein	complement(join(1756630..1757990,1758202..1758310))	Theileria parva strain Muguga	3500663
TpMuguga_04g00897	CDS	TpMuguga_04g00897	NW_876246.1	1758804	1761185	R	uncharacterized protein	complement(1758804..1761185)	Theileria parva strain Muguga	3500664
TpMuguga_04g00898	CDS	TpMuguga_04g00898	NW_876246.1	1761546	1764085	R	ATPase family associated with various cellular activities (AAA) family protein	complement(join(1761546..1761866,1761900..1762108,1762140..1762696,1762727..1763588,1763618..1763851,1763893..1764085))	Theileria parva strain Muguga	3500665
TpMuguga_04g00899	CDS	TpMuguga_04g00899	NW_876246.1	1764580	1765859	D	CRAL/TRIO domain protein	join(1764580..1765121,1765196..1765859)	Theileria parva strain Muguga	3500716
TpMuguga_04g00900	CDS	TpMuguga_04g00900	NW_876246.1	1765922	1766920	R	putative integral membrane protein	complement(1765922..1766920)	Theileria parva strain Muguga	3500717
TpMuguga_04g00901	CDS	TpMuguga_04g00901	NW_876246.1	1767287	1771572	D	uncharacterized protein	join(1767287..1770741,1770774..1771572)	Theileria parva strain Muguga	3500718
TpMuguga_04g02420	CDS	TpMuguga_04g02420	NW_876246.1	1771574	1772305	R	uncharacterized protein	complement(join(1771574..1771604,1771646..1771898,1771956..1772148,1772180..1772305))	Theileria parva strain Muguga	86047835
TpMuguga_04g00902	CDS	TpMuguga_04g00902	NW_876246.1	1772786	1775059	D	WD domain G-beta repeat protein	1772786..1775059	Theileria parva strain Muguga	3500719
TpMuguga_04g00903	CDS	TpMuguga_04g00903	NW_876246.1	1775540	1776052	D	uncharacterized protein	1775540..1776052	Theileria parva strain Muguga	3500720
TpMuguga_04g00904	CDS	TpMuguga_04g00904	NW_876246.1	1776635	1776903	D	putative integral membrane protein	join(1776635..1776804,1776891..1776903)	Theileria parva strain Muguga	3500721
TpMuguga_04g00905	CDS	TpMuguga_04g00905	NW_876246.1	1777851	1779881	D	uncharacterized protein	1777851..1779881	Theileria parva strain Muguga	3500722
TpMuguga_04g00906	CDS	Sart3	NW_876246.1	1780218	1783631	R	Squamous cell carcinoma antigen recognized by T-cells 3	complement(1780218..1783631)	Theileria parva strain Muguga	3500733
TpMuguga_04g02105	CDS	TpMuguga_04g02105	NW_876246.1	1784374	1787256	R	putative integral membrane protein	complement(1784374..1787256)	Theileria parva strain Muguga	86047810
TpMuguga_04g02390	CDS	TpMuguga_04g02390	NW_876246.1	1787781	1789994	R	putative integral membrane protein	complement(1787781..1789994)	Theileria parva strain Muguga	3500734
TpMuguga_04g00908	CDS	IMPA1	NW_876246.1	1790605	1792439	R	Importin subunit alpha-1b	complement(join(1790605..1790790,1790825..1791439,1791534..1791831,1791922..1792439))	Theileria parva strain Muguga	3500735
TpMuguga_04g00909	CDS	TpMuguga_04g00909	NW_876246.1	1792797	1793407	R	Nucleoplasmin family protein	complement(join(1792797..1793027,1793128..1793303,1793398..1793407))	Theileria parva strain Muguga	3500736
TpMuguga_04g02305	CDS	TpMuguga_04g02305	NW_876246.1	1793884	1794039	R	putative integral membrane protein	complement(1793884..1794039)	Theileria parva strain Muguga	86047826
TpMuguga_04g02600	CDS	TpMuguga_04g02600	NW_876246.1	1794400	1794861	D	Ribosomal protein S17 family protein	join(1794400..1794478,1794551..1794638,1794669..1794861)	Theileria parva strain Muguga	86047846
TpMuguga_04g00910	CDS	TpMuguga_04g00910	NW_876246.1	1794942	1795721	R	Coiled-coil domain-containing protein 55 (DUF2040) family protein	complement(1794942..1795721)	Theileria parva strain Muguga	3500737
TpMuguga_04g00911	CDS	rpb-5	NW_876246.1	1795952	1796788	D	DNA-directed RNA polymerases II and IV subunit 5A	join(1795952..1796094,1796129..1796236,1796270..1796351,1796441..1796584,1796614..1796688,1796723..1796788)	Theileria parva strain Muguga	3500738
TpMuguga_04g00912	CDS	TpMuguga_04g00912	NW_876246.1	1796904	1797994	R	WD domain G-beta repeat protein	complement(join(1796904..1797478,1797556..1797771,1797808..1797994))	Theileria parva strain Muguga	3500739
TpMuguga_04g00913	CDS	FES1	NW_876246.1	1798513	1799705	D	ubiquinol-cytochrome c reductase iron-sulfur subunit	join(1798513..1799136,1799169..1799299,1799408..1799586,1799620..1799705)	Theileria parva strain Muguga	3500747
TpMuguga_04g00914	CDS	ABCC2	NW_876246.1	1800272	1805422	D	ABC transporter family protein	1800272..1805422	Theileria parva strain Muguga	3500748
TpMuguga_04g00915	CDS	TpMuguga_04g00915	NW_876246.1	1806217	1807548	D	putative integral membrane protein	1806217..1807548	Theileria parva strain Muguga	3500749
TpMuguga_04g00916	CDS	TpMuguga_04g00916	NW_876246.1	1808265	1809989	D	Tp15	1808265..1809989	Theileria parva strain Muguga	3500750
TpMuguga_04g00917	CDS	TpMuguga_04g00917	NW_876246.1	1810259	1811845	D	Tp31; SVSP family protein	1810259..1811845	Theileria parva strain Muguga	3500751
TpMuguga_04g00918	CDS	TpMuguga_04g00918	NW_876246.1	1812067	1813422	D	SVSP family protein	1812067..1813422	Theileria parva strain Muguga	3500752
TpMuguga_04g00927	CDS	TpMuguga_04g00927	NW_876246.1	1813699	1815312	D	SVSP family protein	1813699..1815312	Theileria parva strain Muguga	3500753
TpMuguga_04g00919	CDS	TpMuguga_04g00919	NW_876246.1	1815731	1817224	D	SVSP family protein	1815731..1817224	Theileria parva strain Muguga	3500841
TpMuguga_04g00920	CDS	TpMuguga_04g00920	NW_876246.1	1817939	1819582	D	SVSP family protein	1817939..1819582	Theileria parva strain Muguga	3500842
TpMuguga_04g00928	CDS	TpMuguga_04g00928	NW_876246.1	1819804	1820667	D	SVSP family protein	1819804..1820667	Theileria parva strain Muguga	3500843
TpMuguga_04g00921	CDS	TpMuguga_04g00921	NW_876246.1	1821229	1821765	D	SVSP family protein	1821229..1821765	Theileria parva strain Muguga	3500844
TpMuguga_04g00922	CDS	TpMuguga_04g00922	NW_876246.1	1822056	1822638	D	uncharacterized protein	join(1822056..1822122,1822541..1822638)	Theileria parva strain Muguga	3500845
TpMuguga_04g00929	CDS	TpMuguga_04g00929	NW_876246.1	1823082	1832984	D	uncharacterized protein	1823082..1832984	Theileria parva strain Muguga	3500846
TP05_0001	CDS	TP05_0001	NC_007758.1	4789	5406	D	ribosomal protein S4	4789..5406	Theileria parva strain Muguga	3882233
TP05_0002	CDS	TP05_0002	NC_007758.1	6625	7158	D	ribosomal protein L4	6625..7158	Theileria parva strain Muguga	3882291
TP05_0003	CDS	rpl2	NC_007758.1	7169	7909	D	ribosomal protein L2	7169..7909	Theileria parva strain Muguga	3882292
TP05_0004	CDS	TP05_0004	NC_007758.1	7893	8129	D	ribosomal protein S19	7893..8129	Theileria parva strain Muguga	3882293
TP05_0005	CDS	TP05_0005	NC_007758.1	8122	8820	D	ribosomal protein S3	8122..8820	Theileria parva strain Muguga	3882294
TP05_0006	CDS	TP05_0006	NC_007758.1	8837	9262	D	ribosomal protein L16	8837..9262	Theileria parva strain Muguga	3882295
TP05_0007	CDS	TP05_0007	NC_007758.1	9252	9455	D	hypothetical protein	9252..9455	Theileria parva strain Muguga	3882296
TP05_0008	CDS	TP05_0008	NC_007758.1	9448	9810	D	ribosomal protein L14	9448..9810	Theileria parva strain Muguga	3882297
TP05_0009	CDS	TP05_0009	NC_007758.1	9819	10442	D	hypothetical protein	9819..10442	Theileria parva strain Muguga	3882298
TP05_0010	CDS	TP05_0010	NC_007758.1	10556	11020	D	hypothetical protein	10556..11020	Theileria parva strain Muguga	3882265
TP05_0011	CDS	TP05_0011	NC_007758.1	11020	11355	D	ribosomal protein S8	11020..11355	Theileria parva strain Muguga	3882266
TP05_0012	CDS	TP05_0012	NC_007758.1	11303	11881	D	ribosomal protein L6	11303..11881	Theileria parva strain Muguga	3882267
TP05_0013	CDS	TP05_0013	NC_007758.1	11881	12504	D	ribosomal protein S5	11881..12504	Theileria parva strain Muguga	3882268
TP05_0014	CDS	TP05_0014	NC_007758.1	12525	12830	D	hypothetical protein	12525..12830	Theileria parva strain Muguga	3882269
TP05_0015	CDS	TP05_0015	NC_007758.1	12796	12912	D	ribosomal protein L36	12796..12912	Theileria parva strain Muguga	3882270
TP05_0016	CDS	TP05_0016	NC_007758.1	12909	13331	D	ribosomal protein S11	12909..13331	Theileria parva strain Muguga	3882271
TP05_0017	CDS	rps12	NC_007758.1	13343	13717	D	ribosomal protein S12	13343..13717	Theileria parva strain Muguga	3882272
TP05_0018	CDS	TP05_0018	NC_007758.1	13683	14354	D	ribosomal protein S7	13683..14354	Theileria parva strain Muguga	3882242
TP05_0019	CDS	tufA	NC_007758.1	14356	15591	D	elongation factor Tu	14356..15591	Theileria parva strain Muguga	3882243
TP05_0020	CDS	TP05_0020	NC_007758.1	15703	16104	D	hypothetical protein	15703..16104	Theileria parva strain Muguga	3882244
TP05_0021	CDS	TP05_0021	NC_007758.1	16135	16776	D	hypothetical protein	16135..16776	Theileria parva strain Muguga	3882245
TP05_0022	CDS	TP05_0022	NC_007758.1	17463	18047	D	hypothetical protein	17463..18047	Theileria parva strain Muguga	3882250
TP05_0023	CDS	clpC	NC_007758.1	18205	19713	D	molecular chaperone	18205..19713	Theileria parva strain Muguga	3882251
TP05_0024	CDS	clpC	NC_007758.1	19698	21287	D	molecular chaperone	19698..21287	Theileria parva strain Muguga	3882252
TP05_0025	CDS	TP05_0025	NC_007758.1	21405	21629	D	hypothetical protein	21405..21629	Theileria parva strain Muguga	3882254
TP05_0026	CDS	TP05_0026	NC_007758.1	21622	21915	D	hypothetical protein	21622..21915	Theileria parva strain Muguga	3882255
TP05_0027	CDS	TP05_0027	NC_007758.1	21916	22098	D	hypothetical protein	21916..22098	Theileria parva strain Muguga	3882256
TP05_0028	CDS	TP05_0028	NC_007758.1	22107	25124	D	RNA polymerase beta subunit	22107..25124	Theileria parva strain Muguga	3882257
TP05_0029	CDS	TP05_0029	NC_007758.1	25135	26739	D	DNA-directed RNA polymerase subunit beta'	25135..26739	Theileria parva strain Muguga	3882234
TP05_0030	CDS	TP05_0030	NC_007758.1	27300	27791	D	hypothetical protein	27300..27791	Theileria parva strain Muguga	3882235
TP05_0031	CDS	TP05_0031	NC_007758.1	28524	28754	D	hypothetical protein	28524..28754	Theileria parva strain Muguga	3882236
TP05_0032	CDS	TP05_0032	NC_007758.1	29117	29641	D	hypothetical protein	29117..29641	Theileria parva strain Muguga	3882237
TP05_0033	CDS	TP05_0033	NC_007758.1	29665	29826	D	hypothetical protein	29665..29826	Theileria parva strain Muguga	3882238
TP05_0034	CDS	TP05_0034	NC_007758.1	29841	30077	D	hypothetical protein	29841..30077	Theileria parva strain Muguga	3882239
TP05_0035	CDS	TP05_0035	NC_007758.1	30353	30877	D	hypothetical protein	30353..30877	Theileria parva strain Muguga	3882240
TP05_0036	CDS	TP05_0036	NC_007758.1	30901	31062	D	hypothetical protein	30901..31062	Theileria parva strain Muguga	3882241
TP05_0037	CDS	TP05_0037	NC_007758.1	31077	31313	D	hypothetical protein	31077..31313	Theileria parva strain Muguga	3882258
TP05_0038	CDS	TP05_0038	NC_007758.1	31592	32083	D	hypothetical protein	31592..32083	Theileria parva strain Muguga	3882259
TP05_0039	CDS	TP05_0039	NC_007758.1	32107	32487	D	hypothetical protein	32107..32487	Theileria parva strain Muguga	3882260
TP05_0040	CDS	TP05_0040	NC_007758.1	32562	32798	D	hypothetical protein	32562..32798	Theileria parva strain Muguga	3882261
TP05_0041	CDS	TP05_0041	NC_007758.1	33076	33600	D	hypothetical protein	33076..33600	Theileria parva strain Muguga	3882262
TP05_0042	CDS	TP05_0042	NC_007758.1	33620	34711	D	RNA polymerase beta'' chain appears to be encoded by two genes in the T. parva apicoplast genome. The protein encoded by this gene is similar to the N-terminal region of the beta'' chain.; DNA-directed RNA polymerase subunit beta''	33620..34711	Theileria parva strain Muguga	3882263
TP05_0043	CDS	TP05_0043	NC_007758.1	34722	35669	D	RNA polymerase beta'' chain appears to be encoded by two genes in the T. parva apicoplast genome. The protein encoded by this gene is similar to the C-terminal region of the beta'' chain.; DNA-directed RNA polymerase subunit beta''	34722..35669	Theileria parva strain Muguga	3882264
TP05_0044	CDS	TP05_0044	NC_007758.1	35682	36374	D	ribosomal protein S2	35682..36374	Theileria parva strain Muguga	3882273
TpMuguga_01g00001	mRNA	TpMuguga_01g00001	NC_007344.1	3039	4658	R	TpMuguga_01g00001	complement(<3039..>4658)	Theileria parva strain Muguga	3502671
TpMuguga_01g00002	mRNA	TpMuguga_01g00002	NC_007344.1	5178	6593	R	TpMuguga_01g00002	complement(<5178..>6593)	Theileria parva strain Muguga	3502672
TpMuguga_01g00003	mRNA	TpMuguga_01g00003	NC_007344.1	7216	17805	R	TpMuguga_01g00003	complement(<7216..>17805)	Theileria parva strain Muguga	3502673
TpMuguga_01g00004	mRNA	TpMuguga_01g00004	NC_007344.1	19082	20668	R	TpMuguga_01g00004	complement(19082..>20668)	Theileria parva strain Muguga	3503550
TpMuguga_01g00005	mRNA	TpMuguga_01g00005	NC_007344.1	20883	21967	R	TpMuguga_01g00005	complement(20883..>21967)	Theileria parva strain Muguga	3503551
TpMuguga_01g00006	mRNA	TpMuguga_01g00006	NC_007344.1	22238	23719	R	TpMuguga_01g00006	complement(<22238..>23719)	Theileria parva strain Muguga	3503552
TpMuguga_01g00007	mRNA	TpMuguga_01g00007	NC_007344.1	23958	26808	R	TpMuguga_01g00007	complement(join(<23958..24937,25287..>26808))	Theileria parva strain Muguga	3503553
TpMuguga_01g00008	mRNA	TpMuguga_01g00008	NC_007344.1	27041	28600	R	TpMuguga_01g00008	complement(<27041..>28600)	Theileria parva strain Muguga	3503554
TpMuguga_01g00009	mRNA	TpMuguga_01g00009	NC_007344.1	28816	30312	R	TpMuguga_01g00009	complement(<28816..>30312)	Theileria parva strain Muguga	3503555
TpMuguga_01g00010	mRNA	TpMuguga_01g00010	NC_007344.1	30421	32352	R	TpMuguga_01g00010	complement(30421..32352)	Theileria parva strain Muguga	86047600
TpMuguga_01g00011	mRNA	abc3	NC_007344.1	33474	38072	D	TpMuguga_01g00011	<33474..>38072	Theileria parva strain Muguga	3503557
TpMuguga_01g00012	mRNA	ZBP14	NC_007344.1	38227	38981	R	TpMuguga_01g00012	complement(join(38227..38452,38485..38672,38703..38785,38848..>38981))	Theileria parva strain Muguga	3502707
TpMuguga_01g00013	mRNA	Exosc9	NC_007344.1	39236	40659	R	TpMuguga_01g00013	complement(join(<39236..39272,39340..39440,39469..39564,39719..39854,39886..39953,39986..40090,40122..40370,40401..40659))	Theileria parva strain Muguga	3502708
TpMuguga_01g00014	mRNA	TpMuguga_01g00014	NC_007344.1	40846	45297	R	TpMuguga_01g00014	complement(join(<40846..43139,43171..43326,43437..>45297))	Theileria parva strain Muguga	3502709
TpMuguga_01g00015	mRNA	Tsr1	NC_007344.1	45794	48760	D	TpMuguga_01g00015	join(45794..46443,46592..46732,46764..47486,47589..47694,47733..47998,48111..48265,48342..48489,48555..48760)	Theileria parva strain Muguga	3502710
TpMuguga_01g00016	mRNA	VPS10	NC_007344.1	48853	51961	R	TpMuguga_01g00016	complement(join(48853..49160,49296..50286,50398..51961))	Theileria parva strain Muguga	3502711
TpMuguga_01g00017	mRNA	TpMuguga_01g00017	NC_007344.1	52440	56084	D	TpMuguga_01g00017	join(52440..52824,52955..53081,53178..53283,53364..53429,53461..53716,53795..54357,54388..54580,54704..54775,54806..55004,55088..55776,55806..55838,55974..>56084)	Theileria parva strain Muguga	3503477
TpMuguga_01g00018	mRNA	TpMuguga_01g00018	NC_007344.1	56181	56803	D	TpMuguga_01g00018	join(<56181..56393,56541..56803)	Theileria parva strain Muguga	3503478
TpMuguga_01g00019	mRNA	TpMuguga_01g00019	NC_007344.1	56787	58190	D	TpMuguga_01g00019	join(56787..57751,57823..58190)	Theileria parva strain Muguga	3503479
TpMuguga_01g00020	mRNA	TpMuguga_01g00020	NC_007344.1	58324	60117	D	TpMuguga_01g00020	join(58324..58881,58969..59761,59875..60117)	Theileria parva strain Muguga	3503480
TpMuguga_01g02140	mRNA	TpMuguga_01g02140	NC_007344.1	60140	67693	R	TpMuguga_01g02140	complement(join(60140..60380,60545..63083,63191..64800,64852..65221,65284..66420,66495..67693))	Theileria parva strain Muguga	3503482
TpMuguga_01g00023	mRNA	TpMuguga_01g00023	NC_007344.1	67792	69037	R	TpMuguga_01g00023	complement(join(<67792..68455,68526..68715,68857..>69037))	Theileria parva strain Muguga	3502622
TpMuguga_01g00024	mRNA	iscS	NC_007344.1	69175	70780	R	TpMuguga_01g00024	complement(join(69175..69479,69548..70780))	Theileria parva strain Muguga	3502623
TpMuguga_01g02185	mRNA	TpMuguga_01g02185	NC_007344.1	71037	71392	R	TpMuguga_01g02185	complement(join(71037..71169,71210..>71392))	Theileria parva strain Muguga	86047617
TpMuguga_01g02190	mRNA	TpMuguga_01g02190	NC_007344.1	71575	72540	R	TpMuguga_01g02190	complement(join(<71575..71712,71790..72284,72316..>72540))	Theileria parva strain Muguga	3502624
TpMuguga_01g02180	mRNA	TpMuguga_01g02180	NC_007344.1	72537	73067	R	TpMuguga_01g02180	complement(join(<72537..72830,72861..73067))	Theileria parva strain Muguga	86047616
TpMuguga_01g00026	mRNA	TpMuguga_01g00026	NC_007344.1	73176	76121	D	TpMuguga_01g00026	73176..76121	Theileria parva strain Muguga	3502625
TpMuguga_01g00027	mRNA	TpMuguga_01g00027	NC_007344.1	75403	76267	R	TpMuguga_01g00027	complement(75403..76267)	Theileria parva strain Muguga	86047601
TpMuguga_01g00028	mRNA	dusA	NC_007344.1	76187	77878	D	TpMuguga_01g00028	join(76187..76611,76642..76745,76776..76814,76845..76955,76992..77503,77537..77654,77700..77878)	Theileria parva strain Muguga	3502627
TpMuguga_01g00029	mRNA	polr2c	NC_007344.1	77978	79093	D	TpMuguga_01g00029	77978..79093	Theileria parva strain Muguga	3502628
TpMuguga_01g00030	mRNA	alkB	NC_007344.1	79070	80547	D	TpMuguga_01g00030	join(79070..79456,79489..79568,79600..79821,79856..79992,80023..80099,80150..80547)	Theileria parva strain Muguga	3502794
TpMuguga_01g00031	mRNA	gatB	NC_007344.1	80615	82886	D	TpMuguga_01g00031	join(80615..82595,82756..82886)	Theileria parva strain Muguga	3502795
TpMuguga_01g02330	mRNA	TpMuguga_01g02330	NC_007344.1	82853	84520	R	TpMuguga_01g02330	complement(<82853..>84520)	Theileria parva strain Muguga	3502796
TpMuguga_01g02620	mRNA	TpMuguga_01g02620	NC_007344.1	84644	87684	R	TpMuguga_01g02620	complement(join(<84644..84694,84729..84988,85021..85748,85794..87358,87394..>87684))	Theileria parva strain Muguga	3502798
TpMuguga_01g00035	mRNA	DNAJA1	NC_007344.1	87762	89301	R	TpMuguga_01g00035	complement(join(87762..88061,88131..88297,88328..89301))	Theileria parva strain Muguga	3502799
TpMuguga_01g00036	mRNA	ORC2	NC_007344.1	89419	91768	D	TpMuguga_01g00036	join(89419..89583,89703..90301,90337..90497,90527..90594,90622..90749,90780..90900,90934..91053,91084..91196,91226..91378,91410..91539,91571..91629,91659..91768)	Theileria parva strain Muguga	3502800
TpMuguga_01g00037	mRNA	papA	NC_007344.1	91924	93892	R	TpMuguga_01g00037	complement(join(91924..92346,92377..92490,92518..92757,92788..93892))	Theileria parva strain Muguga	3503305
TpMuguga_01g00038	mRNA	TpMuguga_01g00038	NC_007344.1	93971	95660	D	TpMuguga_01g00038	93971..95660	Theileria parva strain Muguga	3503306
TpMuguga_01g00039	mRNA	IMP4	NC_007344.1	95662	96709	R	TpMuguga_01g00039	complement(join(95662..96012,96044..96159,96191..96385,96416..96709))	Theileria parva strain Muguga	3503307
TpMuguga_01g00040	mRNA	TpMuguga_01g00040	NC_007344.1	96705	98128	R	TpMuguga_01g00040	complement(join(96705..96987,97022..97342,97374..98128))	Theileria parva strain Muguga	3503308
TpMuguga_01g00041	mRNA	RNASEH2A	NC_007344.1	98232	99412	D	TpMuguga_01g00041	join(98232..98441,98475..98588,98623..98749,98779..98866,98901..98978,99011..99146,99178..99412)	Theileria parva strain Muguga	3503309
TpMuguga_01g00042	mRNA	TpMuguga_01g00042	NC_007344.1	99212	100969	R	TpMuguga_01g00042	complement(join(99212..100347,100378..100710,100748..100969))	Theileria parva strain Muguga	3502989
TpMuguga_01g00043	mRNA	HK	NC_007344.1	100979	102852	D	TpMuguga_01g00043	join(100979..101082,101282..102852)	Theileria parva strain Muguga	3502990
TpMuguga_01g00044	mRNA	TpMuguga_01g00044	NC_007344.1	102847	103777	D	TpMuguga_01g00044	join(<102847..103108,103144..103402,103433..103777)	Theileria parva strain Muguga	3502991
TpMuguga_01g00045	mRNA	HK	NC_007344.1	104119	105617	D	TpMuguga_01g00045	104119..>105617	Theileria parva strain Muguga	3502992
TpMuguga_01g00046	mRNA	TpMuguga_01g00046	NC_007344.1	105737	106202	R	TpMuguga_01g00046	complement(join(<105737..106000,106033..106202))	Theileria parva strain Muguga	3502993
TpMuguga_01g00047	mRNA	TpMuguga_01g00047	NC_007344.1	106271	107298	D	TpMuguga_01g00047	join(106271..106527,106579..106602,106648..106703,106739..106755,106784..106861,106891..106940,106972..107002,107032..107107,107138..107227,107257..>107298)	Theileria parva strain Muguga	3502994
TpMuguga_01g00048	mRNA	TpMuguga_01g00048	NC_007344.1	107279	109342	R	TpMuguga_01g00048	complement(join(107279..107418,107448..107611,107642..107797,107828..107924,107954..108021,108051..108176,108208..108302,108332..108476,108508..108827,108859..109054,109087..109342))	Theileria parva strain Muguga	3502995
TpMuguga_01g02170	mRNA	ACBP5	NC_007344.1	109410	111440	D	TpMuguga_01g02170	join(109410..109732,109771..109842,109886..110065,110101..110225,110258..110363,110395..110444,110474..110516,110549..110567,110598..110668,110697..110778,110808..110911,110943..111056,111105..111171,111202..111440)	Theileria parva strain Muguga	3502617
TpMuguga_01g00051	mRNA	TpMuguga_01g00051	NC_007344.1	111355	113448	R	TpMuguga_01g00051	complement(111355..113448)	Theileria parva strain Muguga	3502618
TpMuguga_01g02605	mRNA	TpMuguga_01g02605	NC_007344.1	113516	115084	D	TpMuguga_01g02605	join(113516..113720,113754..114024,114056..114414,114445..114534,114568..114798,114832..115084)	Theileria parva strain Muguga	3502619
TpMuguga_01g02230	mRNA	TpMuguga_01g02230	NC_007344.1	115160	117227	D	TpMuguga_01g02230	115160..117227	Theileria parva strain Muguga	86047620
TpMuguga_01g00053	mRNA	opa3	NC_007344.1	116779	117713	R	TpMuguga_01g00053	complement(116779..117713)	Theileria parva strain Muguga	3502620
TpMuguga_01g00054	mRNA	yqeH	NC_007344.1	117714	119965	R	TpMuguga_01g00054	complement(join(117714..117804,117840..117902,117933..118064,118096..118200,118232..118570,118602..118740,118771..118853,118885..118940,118973..119311,119342..119407,119439..119515,119561..119669,119705..119830,119864..119965))	Theileria parva strain Muguga	3502621
TpMuguga_01g00055	mRNA	DBP5	NC_007344.1	119942	121861	R	TpMuguga_01g00055	complement(join(119942..120048,120078..120193,120227..120464,120498..120679,120710..120898,120932..121017,121049..121163,121198..121297,121330..121491,121532..121589,121623..121861))	Theileria parva strain Muguga	3502610
TpMuguga_01g00056	mRNA	TpMuguga_01g00056	NC_007344.1	122433	123854	D	TpMuguga_01g00056	122433..123854	Theileria parva strain Muguga	3502611
TpMuguga_01g00057	mRNA	TpMuguga_01g00057	NC_007344.1	124006	125155	D	TpMuguga_01g00057	join(124006..124688,124723..124847,124878..124998,125029..125155)	Theileria parva strain Muguga	3502612
TpMuguga_01g00058	mRNA	TpMuguga_01g00058	NC_007344.1	125217	126265	R	TpMuguga_01g00058	complement(125217..>126265)	Theileria parva strain Muguga	3502613
TpMuguga_01g00059	mRNA	TpMuguga_01g00059	NC_007344.1	126387	128114	R	TpMuguga_01g00059	complement(<126387..>128114)	Theileria parva strain Muguga	3502614
TpMuguga_01g00060	mRNA	TpMuguga_01g00060	NC_007344.1	128148	128682	R	TpMuguga_01g00060	complement(join(<128148..128278,128349..128682))	Theileria parva strain Muguga	3502615
TpMuguga_01g00061	mRNA	TpMuguga_01g00061	NC_007344.1	128603	130422	D	TpMuguga_01g00061	join(128603..129014,129044..129145,129178..129265,129302..129403,129434..129636,129666..129903,129932..130422)	Theileria parva strain Muguga	3502575
TpMuguga_01g00062	mRNA	TpMuguga_01g00062	NC_007344.1	130423	130956	R	TpMuguga_01g00062	complement(join(130423..130572,130608..130956))	Theileria parva strain Muguga	3502576
TpMuguga_01g00063	mRNA	TpMuguga_01g00063	NC_007344.1	131027	132812	D	TpMuguga_01g00063	join(131027..131346,131388..131541,131577..131731,131768..131847,131883..132006,132037..132185,132218..132515,132549..132626,132688..132812)	Theileria parva strain Muguga	3502577
TpMuguga_01g00064	mRNA	ILKAP	NC_007344.1	132813	134165	D	TpMuguga_01g00064	join(132813..132959,133022..133148,133216..133541,133605..133737,133791..133944,133985..134165)	Theileria parva strain Muguga	3502578
TpMuguga_01g00065	mRNA	Adck3	NC_007344.1	134248	136540	R	TpMuguga_01g00065	complement(join(134248..134463,134495..134553,134619..134721,134752..134816,134892..134961,135014..135103,135145..135459,135512..135598,135629..135753,135788..135872,135903..135961,136025..136087,136120..>136540))	Theileria parva strain Muguga	3502579
TpMuguga_01g00066	mRNA	rpmG	NC_007344.1	136595	137065	D	TpMuguga_01g00066	join(136595..136809,136842..137065)	Theileria parva strain Muguga	3502693
TpMuguga_01g00067	mRNA	DBI	NC_007344.1	137230	137496	D	TpMuguga_01g00067	<137230..>137496	Theileria parva strain Muguga	3502694
TpMuguga_01g00068	mRNA	TpMuguga_01g00068	NC_007344.1	138646	141366	D	TpMuguga_01g00068	138646..141366	Theileria parva strain Muguga	3502695
TpMuguga_01g02310	mRNA	JMJ14	NC_007344.1	143159	145985	D	TpMuguga_01g02310	join(<143159..143404,143448..143562,143601..143725,143772..143922,143952..144137,144169..144472,144545..144679,144749..144816,144847..144960,145032..145169,145199..145353,145467..145985)	Theileria parva strain Muguga	3502697
TpMuguga_01g00071	mRNA	TpMuguga_01g00071	NC_007344.1	145900	146445	R	TpMuguga_01g00071	complement(join(145900..145961,146001..146057,146087..146238,146270..146445))	Theileria parva strain Muguga	3502698
TpMuguga_01g00072	mRNA	KPNB1	NC_007344.1	147007	150376	D	TpMuguga_01g00072	join(147007..149050,149158..150109,150177..150376)	Theileria parva strain Muguga	3502699
TpMuguga_01g00073	mRNA	URA5	NC_007344.1	150388	151187	R	TpMuguga_01g00073	complement(join(150388..150497,150536..150812,150851..151187))	Theileria parva strain Muguga	3502844
TpMuguga_01g00074	mRNA	TpMuguga_01g00074	NC_007344.1	151358	154090	D	TpMuguga_01g00074	<151358..>154090	Theileria parva strain Muguga	3502845
TpMuguga_01g00075	mRNA	TpMuguga_01g00075	NC_007344.1	154136	154968	D	TpMuguga_01g00075	join(154136..154398,154444..154549,154652..154968)	Theileria parva strain Muguga	3502846
TpMuguga_01g00076	mRNA	Nsun2	NC_007344.1	154631	157269	R	TpMuguga_01g00076	complement(join(154631..155638,155693..155984,156056..156118,156172..156359,156412..156513,156550..156627,156657..>157269))	Theileria parva strain Muguga	3502847
TpMuguga_01g00077	mRNA	TpMuguga_01g00077	NC_007344.1	157294	158502	D	TpMuguga_01g00077	join(157294..157741,157814..157951,157983..158135,158178..158502)	Theileria parva strain Muguga	3502848
TpMuguga_01g00078	mRNA	UPL4	NC_007344.1	158170	164001	R	TpMuguga_01g00078	complement(join(158170..158480,158533..158828,158869..158978,159101..163661,163699..164001))	Theileria parva strain Muguga	3502849
TpMuguga_01g00079	mRNA	TpMuguga_01g00079	NC_007344.1	164071	164705	D	TpMuguga_01g00079	join(164071..164403,164554..164705)	Theileria parva strain Muguga	3503021
TpMuguga_01g00080	mRNA	TpMuguga_01g00080	NC_007344.1	164917	165487	D	TpMuguga_01g00080	join(164917..165113,165150..165239,165275..165487)	Theileria parva strain Muguga	3503022
TpMuguga_01g00081	mRNA	TpMuguga_01g00081	NC_007344.1	165535	167059	R	TpMuguga_01g00081	complement(join(165535..166608,166739..167059))	Theileria parva strain Muguga	3503023
TpMuguga_01g00082	mRNA	TpMuguga_01g00082	NC_007344.1	167141	167881	D	TpMuguga_01g00082	join(167141..167545,167583..167699,167739..167804,167835..>167881)	Theileria parva strain Muguga	3503024
TpMuguga_01g00083	mRNA	TpMuguga_01g00083	NC_007344.1	167930	168892	R	TpMuguga_01g00083	complement(join(<167930..168076,168154..168297,168354..168892))	Theileria parva strain Muguga	3503025
TpMuguga_01g00084	mRNA	B'GAMMA	NC_007344.1	168873	171608	R	TpMuguga_01g00084	complement(join(<168873..168963,169123..170351,170416..171328,171360..171608))	Theileria parva strain Muguga	3503026
TpMuguga_01g00085	mRNA	TpMuguga_01g00085	NC_007344.1	172201	173300	D	TpMuguga_01g00085	join(172201..172478,172518..172579,172609..172674,172742..172829,172859..172944,172986..173300)	Theileria parva strain Muguga	3503417
TpMuguga_01g00086	mRNA	celf1	NC_007344.1	173199	174534	R	TpMuguga_01g00086	complement(join(173199..173463,173499..173654,173744..174040,174147..174534))	Theileria parva strain Muguga	3503418
TpMuguga_01g00087	mRNA	Xab2	NC_007344.1	174269	177553	D	TpMuguga_01g00087	join(174269..175665,175736..175913,175974..176074,176114..177254,177350..177553)	Theileria parva strain Muguga	3503419
TpMuguga_01g00088	mRNA	TpMuguga_01g00088	NC_007344.1	177557	179500	R	TpMuguga_01g00088	complement(<177557..>179500)	Theileria parva strain Muguga	3503420
TpMuguga_01g02570	mRNA	TpMuguga_01g02570	NC_007344.1	179974	182858	R	TpMuguga_01g02570	complement(join(179974..181346,181467..182858))	Theileria parva strain Muguga	3503421
TpMuguga_01g00091	mRNA	Pnkp	NC_007344.1	182913	184765	D	TpMuguga_01g00091	join(182913..183018,183049..183266,183312..183382,183413..183439,183512..183539,183570..183598,183628..183978,184056..184219,184250..184456,184506..184765)	Theileria parva strain Muguga	3503398
TpMuguga_01g00092	mRNA	TpMuguga_01g00092	NC_007344.1	184802	193265	R	TpMuguga_01g00092	complement(join(184802..185306,185379..185834,186026..186646,186741..187233,187403..190290,190385..>193265))	Theileria parva strain Muguga	3503399
TpMuguga_01g00093	mRNA	TpMuguga_01g00093	NC_007344.1	193819	194916	R	TpMuguga_01g00093	complement(193819..194916)	Theileria parva strain Muguga	3503400
TpMuguga_01g00094	mRNA	TpMuguga_01g00094	NC_007344.1	194983	195681	D	TpMuguga_01g00094	194983..>195681	Theileria parva strain Muguga	3503401
TpMuguga_01g00095	mRNA	TpMuguga_01g00095	NC_007344.1	195835	196596	R	TpMuguga_01g00095	complement(<195835..>196596)	Theileria parva strain Muguga	3503402
TpMuguga_01g00096	mRNA	TpMuguga_01g00096	NC_007344.1	196801	197814	R	TpMuguga_01g00096	complement(join(196801..197016,197099..197152,197221..197531,197562..197619,197653..197814))	Theileria parva strain Muguga	3503191
TpMuguga_01g00097	mRNA	TpMuguga_01g00097	NC_007344.1	197879	198875	R	TpMuguga_01g00097	complement(join(197879..198002,198040..198127,198203..198247,198306..198338,198370..198414,198444..198506,198600..198663,198695..198875))	Theileria parva strain Muguga	3503192
TpMuguga_01g00098	mRNA	TpMuguga_01g00098	NC_007344.1	198844	201314	R	TpMuguga_01g00098	complement(198844..201314)	Theileria parva strain Muguga	3503193
TpMuguga_01g00099	mRNA	Sec24a	NC_007344.1	201455	205175	R	TpMuguga_01g00099	complement(join(201455..202055,202126..202596,202686..202946,203015..203321,203385..203453,203502..203696,203801..204150,204211..204447,204497..204670,204739..204795,204825..205175))	Theileria parva strain Muguga	3503194
TpMuguga_01g00100	mRNA	PRMT5	NC_007344.1	205545	207878	D	TpMuguga_01g00100	205545..207878	Theileria parva strain Muguga	3503195
TpMuguga_01g00101	mRNA	fba	NC_007344.1	208223	209356	D	TpMuguga_01g00101	<208223..>209356	Theileria parva strain Muguga	3503196
TpMuguga_01g00102	mRNA	TpMuguga_01g00102	NC_007344.1	209385	210285	D	TpMuguga_01g00102	join(209385..209599,209685..209826,209919..210012,210078..210285)	Theileria parva strain Muguga	3503185
TpMuguga_01g00103	mRNA	DHX35	NC_007344.1	210360	213271	D	TpMuguga_01g00103	join(210360..210842,210978..211421,211481..211908,211968..212270,212364..212830,212925..213068,213168..213271)	Theileria parva strain Muguga	3503186
TpMuguga_01g00104	mRNA	COX11	NC_007344.1	213265	214497	D	TpMuguga_01g00104	join(213265..213834,213909..214061,214091..214183,214215..214280,214347..214497)	Theileria parva strain Muguga	3503187
TpMuguga_01g00105	mRNA	TpMuguga_01g00105	NC_007344.1	214537	215553	R	TpMuguga_01g00105	complement(join(214537..214634,214695..214748,214801..214926,215015..215152,215270..215397,215455..215553))	Theileria parva strain Muguga	3503188
TpMuguga_01g00106	mRNA	TpMuguga_01g00106	NC_007344.1	215899	217908	R	TpMuguga_01g00106	complement(join(215899..217015,217060..217562,217594..217908))	Theileria parva strain Muguga	3503189
TpMuguga_01g00107	mRNA	Kin	NC_007344.1	217989	219678	D	TpMuguga_01g00107	join(217989..218315,218375..218496,218549..218985,219051..219291,219350..219422,219471..219576,219609..219678)	Theileria parva strain Muguga	3503190
TpMuguga_01g02240	mRNA	TpMuguga_01g02240	NC_007344.1	219448	221169	R	TpMuguga_01g02240	complement(join(219448..219736,219766..219801,219830..219882,219939..220058,220108..220208,220280..220400,220456..220536,220568..220657,220688..220778,220843..220903,220936..221169))	Theileria parva strain Muguga	86047622
TpMuguga_01g00108	mRNA	TpMuguga_01g00108	NC_007344.1	221170	222214	R	TpMuguga_01g00108	complement(join(221170..221414,221530..221604,221714..221769,221887..222214))	Theileria parva strain Muguga	3502749
TpMuguga_01g00109	mRNA	TpMuguga_01g00109	NC_007344.1	222215	223569	R	TpMuguga_01g00109	complement(join(222215..222286,222338..222607,222641..222730,222807..223056,223125..223207,223247..223351,223389..223569))	Theileria parva strain Muguga	3502750
TpMuguga_01g00110	mRNA	TpMuguga_01g00110	NC_007344.1	223588	227273	D	TpMuguga_01g00110	join(223588..224034,224113..227273)	Theileria parva strain Muguga	3502751
TpMuguga_01g00111	mRNA	TpMuguga_01g00111	NC_007344.1	227307	230445	R	TpMuguga_01g00111	complement(227307..230445)	Theileria parva strain Muguga	3502752
TpMuguga_01g00112	mRNA	TpMuguga_01g00112	NC_007344.1	230648	231285	R	TpMuguga_01g00112	complement(join(230648..230845,230880..230952,231023..231285))	Theileria parva strain Muguga	3502753
TpMuguga_01g00113	mRNA	rsmH	NC_007344.1	231244	232820	D	TpMuguga_01g00113	join(231244..231671,231702..232103,232143..232238,232293..232406,232458..232652,232681..232724,232755..232820)	Theileria parva strain Muguga	3502754
TpMuguga_01g00114	mRNA	PIN1	NC_007344.1	232836	233475	R	TpMuguga_01g00114	complement(232836..233475)	Theileria parva strain Muguga	3502441
TpMuguga_01g00115	mRNA	Igbp1	NC_007344.1	233488	235145	D	TpMuguga_01g00115	join(233488..233762,233818..234095,234139..234381,234411..234570,234604..234671,234735..234792,234822..234876,234906..234966,234995..235145)	Theileria parva strain Muguga	3502442
TpMuguga_01g02110	mRNA	rnz	NC_007344.1	235131	238615	R	TpMuguga_01g02110	complement(join(235131..235225,235284..235348,235454..235581,235681..>238615))	Theileria parva strain Muguga	3502443
TpMuguga_01g00118	mRNA	alg7	NC_007344.1	238732	240556	R	TpMuguga_01g00118	complement(join(238732..238890,238920..238986,239052..239092,239122..239223,239274..239387,239419..239463,239503..239570,239599..239757,239788..239848,239878..239928,239958..240088,240117..240556))	Theileria parva strain Muguga	3502445
TpMuguga_01g00119	mRNA	LACS7	NC_007344.1	240862	243918	D	TpMuguga_01g00119	join(240862..241014,241044..241119,241151..241265,241295..241529,241558..241739,241954..242101,242138..242271,242301..242510,242791..243462,243668..243918)	Theileria parva strain Muguga	3502464
TpMuguga_01g02070	mRNA	smc6	NC_007344.1	243899	248685	D	TpMuguga_01g02070	join(243899..244106,244177..244293,244330..244450,244558..244644,244675..244783,244838..244945,244975..245393,245433..245508,245552..245599,245692..245802,245832..245939,245981..246056,246116..246237,246405..247034,247111..247305,247426..247560,247590..247742,247828..247980,248012..248088,248126..248195,248225..248284,248394..248464,248505..248596,248625..248685)	Theileria parva strain Muguga	3502467
TpMuguga_01g00124	mRNA	TpMuguga_01g00124	NC_007344.1	248711	250502	R	TpMuguga_01g00124	complement(join(248711..249462,249539..249690,249720..249966,249995..250050,250195..250502))	Theileria parva strain Muguga	3502469
TpMuguga_01g00125	mRNA	TYW1	NC_007344.1	251103	253854	R	TpMuguga_01g00125	complement(join(251103..251216,251247..251350,251381..251438,251815..251924,251953..252093,252124..252239,252270..252372,252430..252798,252863..253854))	Theileria parva strain Muguga	3502479
TpMuguga_01g00126	mRNA	rpoA	NC_007344.1	253766	257053	D	TpMuguga_01g00126	join(253766..254373,254408..254523,254616..254868,254976..255175,255487..255700,255782..255944,256043..256221,256346..256539,256696..256881,256910..257053)	Theileria parva strain Muguga	3502480
TpMuguga_01g00127	mRNA	UBA2	NC_007344.1	257838	260424	R	TpMuguga_01g00127	complement(join(<257838..258248,258415..259217,259746..260424))	Theileria parva strain Muguga	3502481
TpMuguga_01g00128	mRNA	ADA2A	NC_007344.1	260381	263475	D	TpMuguga_01g00128	join(260381..260906,261419..261657,261719..261786,261959..262126,262247..263475)	Theileria parva strain Muguga	3502411
TpMuguga_01g00129	mRNA	PDIA4	NC_007344.1	263809	266348	R	TpMuguga_01g00129	complement(join(263809..264074,264211..264335,264443..264621,264823..265275,265362..265730,265815..265970,266020..266348))	Theileria parva strain Muguga	3502412
TpMuguga_01g00130	mRNA	CSTF3	NC_007344.1	266224	270338	D	TpMuguga_01g00130	join(266224..266596,266860..267016,267046..267131,267384..267509,267539..267682,267787..267933,268021..268291,268345..268392,268422..268877,268953..269971,270115..270183,270255..270338)	Theileria parva strain Muguga	3502413
TpMuguga_01g00131	mRNA	TpMuguga_01g00131	NC_007344.1	270351	271914	R	TpMuguga_01g00131	complement(270351..271914)	Theileria parva strain Muguga	3502414
TpMuguga_01g00132	mRNA	TpMuguga_01g00132	NC_007344.1	272546	274226	D	TpMuguga_01g00132	join(<272546..272764,272823..273366,273411..273525,273560..273612,273642..274084,274116..274226)	Theileria parva strain Muguga	3502415
TpMuguga_01g00133	mRNA	TpMuguga_01g00133	NC_007344.1	274403	275623	R	TpMuguga_01g00133	complement(<274403..>275623)	Theileria parva strain Muguga	3502512
TpMuguga_01g02765	mRNA	TpMuguga_01g02765	NC_007344.1	276011	276319	R	TpMuguga_01g02765	complement(<276011..>276319)	Theileria parva strain Muguga	86047656
TpMuguga_01g00135	mRNA	TpMuguga_01g00135	NC_007344.1	276893	277709	R	TpMuguga_01g00135	complement(<276893..277709)	Theileria parva strain Muguga	3502514
TpMuguga_01g00136	mRNA	ACAP3	NC_007344.1	277750	279212	D	TpMuguga_01g00136	join(277750..278110,278283..278377,278408..278496,278538..278619,278651..279034,279101..279212)	Theileria parva strain Muguga	3502515
TpMuguga_01g00137	mRNA	TpMuguga_01g00137	NC_007344.1	279208	280389	R	TpMuguga_01g00137	complement(join(279208..279670,279806..279958,280057..280389))	Theileria parva strain Muguga	3502516
TpMuguga_01g00138	mRNA	TpMuguga_01g00138	NC_007344.1	280390	281145	R	TpMuguga_01g00138	complement(join(280390..280581,280618..281145))	Theileria parva strain Muguga	3502517
TpMuguga_01g00139	mRNA	TpMuguga_01g00139	NC_007344.1	281209	282913	D	TpMuguga_01g00139	join(281209..281472,281505..282111,282160..282292,282375..282417,282472..282643,282808..>282913)	Theileria parva strain Muguga	3502518
TpMuguga_01g00140	mRNA	TpMuguga_01g00140	NC_007344.1	282953	284366	D	TpMuguga_01g00140	join(<282953..283042,283128..283283,283409..284188,284284..284366)	Theileria parva strain Muguga	3502635
TpMuguga_01g02465	mRNA	MSI2	NC_007344.1	284554	286526	D	TpMuguga_01g02465	join(284554..284760,284792..284882,284915..285060,285244..285299,285331..285378,285410..285452,285486..285568,285618..285729,285760..285793,285862..285945,285974..286273,286337..286384,286414..286526)	Theileria parva strain Muguga	3502637
TpMuguga_01g00143	mRNA	TpMuguga_01g00143	NC_007344.1	286512	289198	R	TpMuguga_01g00143	complement(286512..289198)	Theileria parva strain Muguga	3502638
TpMuguga_01g00144	mRNA	TpMuguga_01g00144	NC_007344.1	289429	293085	R	TpMuguga_01g00144	complement(<289429..>293085)	Theileria parva strain Muguga	3502639
TpMuguga_01g00145	mRNA	hisS	NC_007344.1	293418	296540	R	TpMuguga_01g00145	complement(join(293418..293645,293703..295347,295399..295544,295587..295722,295773..296540))	Theileria parva strain Muguga	3502640
TpMuguga_01g02200	mRNA	mak5	NC_007344.1	296578	298956	D	TpMuguga_01g02200	join(296578..297052,297119..297547,297604..297813,297875..297987,298017..298157,298222..298379,298437..298559,298630..298682,298722..298868,298898..298956)	Theileria parva strain Muguga	3502801
TpMuguga_01g02375	mRNA	TpMuguga_01g02375	NC_007344.1	299148	299864	D	TpMuguga_01g02375	<299148..>299864	Theileria parva strain Muguga	86047630
TpMuguga_01g00148	mRNA	TpMuguga_01g00148	NC_007344.1	299909	301759	D	TpMuguga_01g00148	join(<299909..300254,300324..300493,300525..300656,300706..300909,300947..301020,301057..301196,301234..301374,301435..301507,301537..301667,301698..301759)	Theileria parva strain Muguga	3502803
TpMuguga_01g00149	mRNA	AFC3	NC_007344.1	301780	303969	R	TpMuguga_01g00149	complement(join(301780..301948,302013..302073,302130..302227,302263..302378,302469..302601,302691..303969))	Theileria parva strain Muguga	3502804
TpMuguga_01g00150	mRNA	TpMuguga_01g00150	NC_007344.1	303871	305413	D	TpMuguga_01g00150	join(303871..304017,304057..304142,304171..304296,304335..304484,304572..304660,304692..304748,304782..304865,304905..304979,305010..305080,305110..305235,305335..>305413)	Theileria parva strain Muguga	3502805
TpMuguga_01g02590	mRNA	TpMuguga_01g02590	NC_007344.1	305410	305754	R	TpMuguga_01g02590	complement(<305410..>305754)	Theileria parva strain Muguga	86047645
TpMuguga_01g02625	mRNA	TpMuguga_01g02625	NC_007344.1	305902	306682	R	TpMuguga_01g02625	complement(join(305902..306023,306090..306138,306172..306227,306340..306399,306458..306682))	Theileria parva strain Muguga	86047647
TpMuguga_01g00151	mRNA	TpMuguga_01g00151	NC_007344.1	306640	309166	D	TpMuguga_01g00151	join(306640..306976,307011..307162,307226..307317,307390..307570,307601..307636,307741..307821,307852..307920,308045..308252,308340..308533,308659..308868,308948..309166)	Theileria parva strain Muguga	3502885
TpMuguga_01g00152	mRNA	TpMuguga_01g00152	NC_007344.1	309187	311935	R	TpMuguga_01g00152	complement(309187..311935)	Theileria parva strain Muguga	3502886
TpMuguga_01g00153	mRNA	TpMuguga_01g00153	NC_007344.1	312143	314968	R	TpMuguga_01g00153	complement(join(<312143..314646,314761..>314968))	Theileria parva strain Muguga	3502887
TpMuguga_01g00154	mRNA	TpMuguga_01g00154	NC_007344.1	315523	316375	D	TpMuguga_01g00154	315523..316375	Theileria parva strain Muguga	3502888
TpMuguga_01g00155	mRNA	UVH6	NC_007344.1	316633	320115	R	TpMuguga_01g00155	complement(join(<316633..316986,317097..317934,318002..318683,318866..319090,319212..319307,319339..319665,319878..320115))	Theileria parva strain Muguga	3502889
TpMuguga_01g00156	mRNA	TpMuguga_01g00156	NC_007344.1	320305	322013	R	TpMuguga_01g00156	complement(join(320305..321064,321182..321295,321397..322013))	Theileria parva strain Muguga	3502890
TpMuguga_01g00157	mRNA	TpMuguga_01g00157	NC_007344.1	322688	325408	D	TpMuguga_01g00157	join(<322688..323055,323191..>325408)	Theileria parva strain Muguga	3502903
TpMuguga_01g00158	mRNA	RSPH10B2	NC_007344.1	325552	327667	R	TpMuguga_01g00158	complement(join(<325552..325775,325906..325974,326122..326300,326386..326482,326641..326931,327092..327667))	Theileria parva strain Muguga	3502904
TpMuguga_01g00159	mRNA	TpMuguga_01g00159	NC_007344.1	327885	328560	D	TpMuguga_01g00159	join(327885..328046,328125..328146,328184..328222,328252..328389,328469..328560)	Theileria parva strain Muguga	3502905
TpMuguga_01g00160	mRNA	MPP10	NC_007344.1	328440	330454	R	TpMuguga_01g00160	complement(328440..330454)	Theileria parva strain Muguga	3502906
TpMuguga_01g00161	mRNA	serS	NC_007344.1	330444	332421	D	TpMuguga_01g00161	join(330444..330709,330743..332164,332246..>332421)	Theileria parva strain Muguga	3502907
TpMuguga_01g00162	mRNA	TpMuguga_01g00162	NC_007344.1	332423	333622	D	TpMuguga_01g00162	join(<332423..332654,332821..332894,332965..333015,333049..333124,333260..333368,333428..333471,333521..333622)	Theileria parva strain Muguga	3502908
TpMuguga_01g00163	mRNA	SRP19	NC_007344.1	333612	334400	D	TpMuguga_01g00163	join(333612..333909,334125..334212,334243..334400)	Theileria parva strain Muguga	3502937
TpMuguga_01g00164	mRNA	TpMuguga_01g00164	NC_007344.1	334403	339031	R	TpMuguga_01g00164	complement(join(334403..334589,334684..334792,334942..335139,335269..335553,335676..336503,336612..337777,337874..337951,338065..338382,338505..338690,338821..>339031))	Theileria parva strain Muguga	3502938
TpMuguga_01g00165	mRNA	TpMuguga_01g00165	NC_007344.1	339752	341711	D	TpMuguga_01g00165	join(339752..340124,340347..>341711)	Theileria parva strain Muguga	3502939
TpMuguga_01g00166	mRNA	proRS	NC_007344.1	341799	344925	R	TpMuguga_01g00166	complement(join(<341799..341933,342028..342088,342331..342882,343025..343204,343331..343704,343817..343936,344016..344319,344445..344584,344647..344784,344863..>344925))	Theileria parva strain Muguga	3502940
TpMuguga_01g00167	mRNA	tif225	NC_007344.1	345166	347222	R	TpMuguga_01g00167	complement(join(<345166..346663,346702..346823,346893..>347222))	Theileria parva strain Muguga	3502941
TpMuguga_01g00168	mRNA	TpMuguga_01g00168	NC_007344.1	347268	347871	R	TpMuguga_01g00168	complement(join(347268..347466,347568..347871))	Theileria parva strain Muguga	3502971
TpMuguga_01g02120	mRNA	LAS21	NC_007344.1	347943	352369	D	TpMuguga_01g02120	join(347943..348298,348405..348705,348809..348896,348995..349127,349245..349461,349557..351958,352075..352147,352237..352369)	Theileria parva strain Muguga	3502972
TpMuguga_01g00171	mRNA	BET2	NC_007344.1	352405	353876	R	TpMuguga_01g00171	complement(join(352405..352793,352913..353876))	Theileria parva strain Muguga	3502974
TpMuguga_01g00172	mRNA	TpMuguga_01g00172	NC_007344.1	353950	354783	D	TpMuguga_01g00172	join(353950..354130,354200..354291,354323..354344,354459..354585,354684..354783)	Theileria parva strain Muguga	3502975
TpMuguga_01g00173	mRNA	fdx1l	NC_007344.1	354739	355720	R	TpMuguga_01g00173	complement(join(354739..354979,355087..355216,355409..355467,355611..355720))	Theileria parva strain Muguga	3502976
TpMuguga_01g00174	mRNA	TpMuguga_01g00174	NC_007344.1	355744	356545	D	TpMuguga_01g00174	join(355744..356044,356117..356189,356261..356545)	Theileria parva strain Muguga	3503052
TpMuguga_01g00175	mRNA	TpMuguga_01g00175	NC_007344.1	356546	357459	D	TpMuguga_01g00175	join(<356546..356749,356920..356939,356971..357008,357099..357127,357157..357213,357332..357459)	Theileria parva strain Muguga	3503053
TpMuguga_01g00176	mRNA	TpMuguga_01g00176	NC_007344.1	357562	358841	D	TpMuguga_01g00176	join(357562..357773,357846..357959,358095..358298,358449..358607,358724..358841)	Theileria parva strain Muguga	3503054
TpMuguga_01g00177	mRNA	BAS1	NC_007344.1	358945	359796	D	TpMuguga_01g00177	358945..359796	Theileria parva strain Muguga	3503055
TpMuguga_01g00178	mRNA	TpMuguga_01g00178	NC_007344.1	360566	362990	D	TpMuguga_01g00178	360566..362990	Theileria parva strain Muguga	3503056
TpMuguga_01g00179	mRNA	TpMuguga_01g00179	NC_007344.1	363137	365732	D	TpMuguga_01g00179	join(<363137..363695,363844..364033,364067..364500,364619..365732)	Theileria parva strain Muguga	3503057
TpMuguga_01g00180	mRNA	TpMuguga_01g00180	NC_007344.1	365795	366675	R	TpMuguga_01g00180	complement(365795..366675)	Theileria parva strain Muguga	3503058
TpMuguga_01g00181	mRNA	TpMuguga_01g00181	NC_007344.1	366673	367983	R	TpMuguga_01g00181	complement(join(366673..367142,367327..367525,367766..367983))	Theileria parva strain Muguga	3503222
TpMuguga_01g00182	mRNA	TpMuguga_01g00182	NC_007344.1	368041	369917	D	TpMuguga_01g00182	join(368041..368152,368264..368397,368750..368856,368989..369057,369131..369193,369224..369283,369396..369495,369525..369586,369617..369917)	Theileria parva strain Muguga	3503223
TpMuguga_01g00183	mRNA	TpMuguga_01g00183	NC_007344.1	369782	370651	R	TpMuguga_01g00183	complement(369782..370651)	Theileria parva strain Muguga	3503224
TpMuguga_01g00184	mRNA	TpMuguga_01g00184	NC_007344.1	370658	371273	R	TpMuguga_01g00184	complement(join(<370658..370757,370859..370897,370981..371273))	Theileria parva strain Muguga	3503225
TpMuguga_01g00185	mRNA	Msh6	NC_007344.1	371404	375910	R	TpMuguga_01g00185	complement(join(371404..371794,371968..372080,372186..372310,372471..373004,373131..375393,375595..375837,375870..375910))	Theileria parva strain Muguga	3503226
TpMuguga_01g00186	mRNA	TpMuguga_01g00186	NC_007344.1	376017	379523	R	TpMuguga_01g00186	complement(join(376017..376084,376174..376302,376418..376522,376554..376611,376783..377002,377031..377306,377440..377574,377654..377744,377869..377928,378029..378191,378306..379052,379156..379523))	Theileria parva strain Muguga	3503227
TpMuguga_01g00187	mRNA	PBD1	NC_007344.1	379577	380492	D	TpMuguga_01g00187	join(379577..380098,380170..380492)	Theileria parva strain Muguga	3503249
TpMuguga_01g00188	mRNA	phb2	NC_007344.1	380623	381726	R	TpMuguga_01g00188	complement(join(380623..381364,381579..381726))	Theileria parva strain Muguga	3503250
TpMuguga_01g00189	mRNA	NAPEPLD	NC_007344.1	381755	383130	R	TpMuguga_01g00189	complement(join(381755..382452,382485..382693,382753..383130))	Theileria parva strain Muguga	3503251
TpMuguga_01g00190	mRNA	groS	NC_007344.1	383052	383513	D	TpMuguga_01g00190	join(383052..383104,383138..383263,383314..383513)	Theileria parva strain Muguga	3503252
TpMuguga_01g00191	mRNA	TpMuguga_01g00191	NC_007344.1	383522	384701	R	TpMuguga_01g00191	complement(join(383522..383591,383622..383668,383809..383986,384115..384455,384489..384701))	Theileria parva strain Muguga	3503253
TpMuguga_01g00192	mRNA	TpMuguga_01g00192	NC_007344.1	384726	385884	R	TpMuguga_01g00192	complement(join(384726..384851,384937..385884))	Theileria parva strain Muguga	3503254
TpMuguga_01g00193	mRNA	pgdP	NC_007344.1	385863	387631	R	TpMuguga_01g00193	complement(join(385863..386022,386102..386231,386261..386345,386376..386504,386536..386736,386769..386994,387023..387280,387311..387355,387387..387631))	Theileria parva strain Muguga	3503238
TpMuguga_01g00194	mRNA	arp4	NC_007344.1	387840	389721	R	TpMuguga_01g00194	complement(387840..389721)	Theileria parva strain Muguga	3503239
TpMuguga_01g00195	mRNA	TpMuguga_01g00195	NC_007344.1	389850	391771	R	TpMuguga_01g00195	complement(join(389850..390172,390247..390477,390508..390656,390686..391771))	Theileria parva strain Muguga	3503240
TpMuguga_01g00196	mRNA	TpMuguga_01g00196	NC_007344.1	391881	393883	D	TpMuguga_01g00196	join(<391881..392022,392307..392386,392648..>393883)	Theileria parva strain Muguga	3503241
TpMuguga_01g02045	mRNA	Alg14	NC_007344.1	393802	394747	R	TpMuguga_01g02045	complement(join(393802..394043,394082..394141,394171..394331,394364..394510,394554..394747))	Theileria parva strain Muguga	86047609
TpMuguga_01g00197	mRNA	engB	NC_007344.1	394758	395953	R	TpMuguga_01g00197	complement(join(394758..394972,395002..395131,395167..395222,395252..395341,395371..395427,395457..395549,395579..395677,395713..395792,395825..395953))	Theileria parva strain Muguga	3503242
TpMuguga_01g00198	mRNA	TpMuguga_01g00198	NC_007344.1	395954	396522	R	TpMuguga_01g00198	complement(join(395954..396336,396397..396522))	Theileria parva strain Muguga	3503232
TpMuguga_01g00199	mRNA	RPL13	NC_007344.1	396558	397486	R	TpMuguga_01g00199	complement(join(396558..397192,397225..397263,397406..397486))	Theileria parva strain Muguga	3503233
TpMuguga_01g00200	mRNA	RpS16	NC_007344.1	397478	398241	D	TpMuguga_01g00200	join(397478..397630,397777..398241)	Theileria parva strain Muguga	3503234
TpMuguga_01g00201	mRNA	ATPC	NC_007344.1	398256	399593	R	TpMuguga_01g00201	complement(join(398256..398551,398581..398682,398713..398942,398981..399056,399101..399193,399227..399593))	Theileria parva strain Muguga	3503235
TpMuguga_01g00202	mRNA	SMU1	NC_007344.1	399668	401902	D	TpMuguga_01g00202	join(399668..399873,399953..400163,400194..400422,400454..400638,400669..400733,400763..400838,400870..400965,400995..401052,401083..401152,401186..401265,401297..401469,401500..401626,401657..401751,401781..401902)	Theileria parva strain Muguga	3503236
TpMuguga_01g02055	mRNA	TpMuguga_01g02055	NC_007344.1	401963	404275	D	TpMuguga_01g02055	join(401963..402313,402346..402535,402567..402870,402900..402991,403029..403136,403167..403238,403270..403314,403345..403386,403417..403536,403568..403639,403673..403741,403772..403873,403906..403935,403966..404088,404126..404178,404208..404275)	Theileria parva strain Muguga	3503098
TpMuguga_01g00206	mRNA	TpMuguga_01g00206	NC_007344.1	404127	405731	R	TpMuguga_01g00206	complement(join(404127..404563,404611..404698,404730..404905,404938..405196,405228..405731))	Theileria parva strain Muguga	3503099
TpMuguga_01g00207	mRNA	TpMuguga_01g00207	NC_007344.1	405781	406506	D	TpMuguga_01g00207	join(405781..406223,406290..406506)	Theileria parva strain Muguga	3503100
TpMuguga_01g00208	mRNA	TpMuguga_01g00208	NC_007344.1	406507	407717	R	TpMuguga_01g00208	complement(join(406507..406665,406696..406786,406817..406939,406970..407060,407092..407238,407270..407717))	Theileria parva strain Muguga	3503101
TpMuguga_01g00209	mRNA	TpMuguga_01g00209	NC_007344.1	407787	410315	D	TpMuguga_01g00209	join(407787..409913,409950..410074,410105..410315)	Theileria parva strain Muguga	3503102
TpMuguga_01g00210	mRNA	Sdhb	NC_007344.1	410312	411458	R	TpMuguga_01g00210	complement(join(410312..410433,410463..410649,410697..410783,410824..410886,410915..411157,411193..411458))	Theileria parva strain Muguga	3503145
TpMuguga_01g02015	mRNA	Mettl13	NC_007344.1	411484	413910	R	TpMuguga_01g02015	complement(join(<411484..411570,411601..411669,411706..412187,412223..412715,412747..412794,412881..413062,413097..413788,413819..>413910))	Theileria parva strain Muguga	3503146
TpMuguga_01g02355	mRNA	RRP3	NC_007344.1	413919	416549	R	TpMuguga_01g02355	complement(join(<413919..414097,414130..414394,414486..>416549))	Theileria parva strain Muguga	3503147
TpMuguga_01g00213	mRNA	TpMuguga_01g00213	NC_007344.1	416569	417256	R	TpMuguga_01g00213	complement(join(<416569..417068,417109..>417256))	Theileria parva strain Muguga	3503148
TpMuguga_01g00214	mRNA	TpMuguga_01g00214	NC_007344.1	417437	418518	D	TpMuguga_01g00214	join(417437..417600,417674..418518)	Theileria parva strain Muguga	3503149
TpMuguga_01g02585	mRNA	TpMuguga_01g02585	NC_007344.1	418764	421912	D	TpMuguga_01g02585	join(<418764..420566,420597..420677,420710..420856,420887..420959,420994..421190,421222..421310,421342..421619,421654..421812,421845..>421912)	Theileria parva strain Muguga	3503150
TpMuguga_01g02780	mRNA	TGFBRAP1	NC_007344.1	422096	425264	D	TpMuguga_01g02780	join(<422096..422233,422295..423942,423976..424062,424094..424179,424212..424335,424366..>425264)	Theileria parva strain Muguga	3503046
TpMuguga_01g00219	mRNA	ppt1	NC_007344.1	425667	428951	D	TpMuguga_01g00219	join(<425667..425910,425994..426132,426164..426386,426476..427234,427265..427408,427441..427598,427628..427808,427882..428565,428645..428796,428828..>428951)	Theileria parva strain Muguga	3503048
TpMuguga_01g00220	mRNA	TpMuguga_01g00220	NC_007344.1	429010	429570	D	TpMuguga_01g00220	join(<429010..429093,429196..>429570)	Theileria parva strain Muguga	3503049
TpMuguga_01g00221	mRNA	TpMuguga_01g00221	NC_007344.1	429572	430441	D	TpMuguga_01g00221	<429572..>430441	Theileria parva strain Muguga	3503050
TpMuguga_01g00222	mRNA	TpMuguga_01g00222	NC_007344.1	430532	433213	R	TpMuguga_01g00222	complement(join(<430532..430633,430662..430739,430773..430836,430866..430941,431057..431121,431152..431615,431648..431713,431743..431820,431850..431977,432011..432059,432100..432504,432535..432700,432767..433213))	Theileria parva strain Muguga	3503051
TpMuguga_01g00223	mRNA	METTL17	NC_007344.1	433290	435487	D	TpMuguga_01g00223	join(433290..433694,433748..433914,433944..434039,434072..434145,434173..434267,434296..434396,434427..434483,434514..434618,434648..434746,434782..434852,434895..434967,435006..435074,435154..435191,435227..435356,435387..435487)	Theileria parva strain Muguga	3502863
TpMuguga_01g00224	mRNA	ygaF	NC_007344.1	435478	436393	R	TpMuguga_01g00224	complement(join(435478..435563,435596..435764,435829..436076,436106..436393))	Theileria parva strain Muguga	3502864
TpMuguga_01g00225	mRNA	polr2g	NC_007344.1	436465	437381	R	TpMuguga_01g00225	complement(join(436465..436803,436941..437381))	Theileria parva strain Muguga	3502865
TpMuguga_01g00226	mRNA	TpMuguga_01g00226	NC_007344.1	437398	437783	D	TpMuguga_01g00226	join(437398..437610,437692..437783)	Theileria parva strain Muguga	3502866
TpMuguga_01g00227	mRNA	CAL	NC_007344.1	439158	440134	R	TpMuguga_01g00227	complement(join(439158..439311,439344..439413,439447..439490,439554..439631,439672..439786,439841..440134))	Theileria parva strain Muguga	3502867
TpMuguga_01g02025	mRNA	TpMuguga_01g02025	NC_007344.1	441069	455543	D	TpMuguga_01g02025	join(441069..441424,441455..441542,441575..442269,442309..442392,442444..442566,442692..448067,448211..455543)	Theileria parva strain Muguga	3502766
TpMuguga_01g00230	mRNA	TpMuguga_01g00230	NC_007344.1	455872	459210	R	TpMuguga_01g00230	complement(join(455872..456323,456500..456766,457073..459210))	Theileria parva strain Muguga	3502768
TpMuguga_01g00231	mRNA	DCAF13	NC_007344.1	459493	461598	R	TpMuguga_01g00231	complement(join(459493..459611,459647..460040,460074..460303,460373..460482,460503..460584,460616..460779,460903..461005,461087..461212,461246..461598))	Theileria parva strain Muguga	3502769
TpMuguga_01g00232	mRNA	TpMuguga_01g00232	NC_007344.1	461926	463144	D	TpMuguga_01g00232	join(461926..462536,462684..463144)	Theileria parva strain Muguga	3502770
TpMuguga_01g00233	mRNA	polr2h	NC_007344.1	463335	463982	D	TpMuguga_01g00233	join(<463335..463496,463591..463742,463859..>463982)	Theileria parva strain Muguga	3502771
TpMuguga_01g00234	mRNA	Dynll1	NC_007344.1	464056	464573	R	TpMuguga_01g00234	complement(464056..464573)	Theileria parva strain Muguga	3502806
TpMuguga_01g00235	mRNA	TIF3A1	NC_007344.1	464654	468577	R	TpMuguga_01g00235	complement(join(464654..465965,466131..468577))	Theileria parva strain Muguga	3502807
TpMuguga_01g00236	mRNA	TpMuguga_01g00236	NC_007344.1	469098	471219	D	TpMuguga_01g00236	469098..471219	Theileria parva strain Muguga	3502808
TpMuguga_01g00237	mRNA	TpMuguga_01g00237	NC_007344.1	471336	472754	D	TpMuguga_01g00237	join(<471336..471578,471614..471918,471977..472106,472141..472301,472366..472569,472635..472754)	Theileria parva strain Muguga	3502809
TpMuguga_01g00238	mRNA	Rbmx2	NC_007344.1	472796	474019	D	TpMuguga_01g00238	join(472796..473020,473057..473155,473228..473379,473432..474019)	Theileria parva strain Muguga	3502810
TpMuguga_01g00239	mRNA	TpMuguga_01g00239	NC_007344.1	474274	476341	D	TpMuguga_01g00239	474274..>476341	Theileria parva strain Muguga	3502811
TpMuguga_01g00240	mRNA	TpMuguga_01g00240	NC_007344.1	476462	478323	D	TpMuguga_01g00240	join(476462..476710,476754..476847,476899..476963,477070..477778,477943..478323)	Theileria parva strain Muguga	3502501
TpMuguga_01g00241	mRNA	cct4	NC_007344.1	478472	480874	R	TpMuguga_01g00241	complement(join(478472..478797,478922..479148,479182..479334,479440..479856,479921..480013,480068..480226,480290..480432,480515..480874))	Theileria parva strain Muguga	3502502
TpMuguga_01g00242	mRNA	TpMuguga_01g00242	NC_007344.1	481357	484729	D	TpMuguga_01g00242	join(481357..482447,482479..482586,482653..483017,483073..483201,483281..483382,483415..483522,483588..484239,484322..484398,484428..484729)	Theileria parva strain Muguga	3502503
TpMuguga_01g00243	mRNA	Ddb1	NC_007344.1	484835	489678	D	TpMuguga_01g00243	join(484835..485226,485298..489000,489211..489678)	Theileria parva strain Muguga	3502504
TpMuguga_01g00244	mRNA	TpMuguga_01g00244	NC_007344.1	489758	490890	R	TpMuguga_01g00244	complement(join(489758..489902,489995..490241,490306..490397,490485..490890))	Theileria parva strain Muguga	3502505
TpMuguga_01g00245	mRNA	TpMuguga_01g00245	NC_007344.1	490885	492524	D	TpMuguga_01g00245	join(490885..491900,491990..492524)	Theileria parva strain Muguga	3502506
TpMuguga_01g00246	mRNA	TpMuguga_01g00246	NC_007344.1	492546	494495	R	TpMuguga_01g00246	complement(join(492546..494104,494188..494304,494390..494495))	Theileria parva strain Muguga	3502507
TpMuguga_01g00247	mRNA	DGAT1	NC_007344.1	494748	497218	R	TpMuguga_01g00247	complement(join(494748..494837,494904..494969,495039..495299,495377..495496,495533..495638,495675..495760,495793..495919,495952..496045,496076..496235,496286..496359,496429..496580,496667..497218))	Theileria parva strain Muguga	3502508
TpMuguga_01g00248	mRNA	THG1L	NC_007344.1	497266	498484	R	TpMuguga_01g00248	complement(join(497266..497582,497613..497692,497724..497809,497863..498032,498093..498137,498175..498484))	Theileria parva strain Muguga	3502509
TpMuguga_01g00249	mRNA	TpMuguga_01g00249	NC_007344.1	498492	499990	R	TpMuguga_01g00249	complement(join(498492..498627,498690..499423,499479..499583,499617..499686,499720..499990))	Theileria parva strain Muguga	3502510
TpMuguga_01g00250	mRNA	TpMuguga_01g00250	NC_007344.1	499914	501549	D	TpMuguga_01g00250	join(499914..500221,500288..500383,500418..500555,500587..500616,500682..500980,501012..501032,501091..501165,501218..501549)	Theileria parva strain Muguga	3502511
TpMuguga_01g00251	mRNA	TpMuguga_01g00251	NC_007344.1	501589	503523	R	TpMuguga_01g00251	complement(join(<501589..501789,501822..502222,502257..502832,502863..502975,503010..503070,503160..>503523))	Theileria parva strain Muguga	3502416
TpMuguga_01g00252	mRNA	ABCB27	NC_007344.1	503605	506276	R	TpMuguga_01g00252	complement(join(503605..503810,503840..503939,504030..504567,504615..504713,504792..504856,504892..505069,505154..505206,505263..506276))	Theileria parva strain Muguga	3502417
TpMuguga_01g00253	mRNA	TpMuguga_01g00253	NC_007344.1	506610	507958	D	TpMuguga_01g00253	join(<506610..506713,507435..507572,507636..507728,507767..507813,507846..>507958)	Theileria parva strain Muguga	3502418
TpMuguga_01g00254	mRNA	TpMuguga_01g00254	NC_007344.1	508175	509372	D	TpMuguga_01g00254	join(<508175..508292,508332..508358,508390..508424,508472..508499,508700..508888,508966..509134,509201..>509372)	Theileria parva strain Muguga	3502419
TpMuguga_01g00255	mRNA	TpMuguga_01g00255	NC_007344.1	509428	510246	R	TpMuguga_01g00255	complement(join(<509428..509481,509510..509566,509595..509678,509709..509792,509822..510246))	Theileria parva strain Muguga	3502420
TpMuguga_01g00256	mRNA	TpMuguga_01g00256	NC_007344.1	511045	515109	R	TpMuguga_01g00256	complement(<511045..>515109)	Theileria parva strain Muguga	3502421
TpMuguga_01g00257	mRNA	TpMuguga_01g00257	NC_007344.1	516339	523523	R	TpMuguga_01g00257	complement(join(<516339..521133,521167..>523523))	Theileria parva strain Muguga	3502422
TpMuguga_01g00258	mRNA	TpMuguga_01g00258	NC_007344.1	524577	526022	R	TpMuguga_01g00258	complement(<524577..>526022)	Theileria parva strain Muguga	3502423
TpMuguga_01g02275	mRNA	TpMuguga_01g02275	NC_007344.1	527332	533318	D	TpMuguga_01g02275	join(<527332..527666,527698..528195,528224..>533318)	Theileria parva strain Muguga	3502424
TpMuguga_01g00261	mRNA	TpMuguga_01g00261	NC_007344.1	533406	534264	R	TpMuguga_01g00261	complement(533406..534264)	Theileria parva strain Muguga	3502426
TpMuguga_01g00262	mRNA	KGD2	NC_007344.1	534702	536572	D	TpMuguga_01g00262	join(534702..535031,535063..535251,535283..535578,535609..535831,535906..536033,536110..536194,536224..536286,536340..536572)	Theileria parva strain Muguga	3502427
TpMuguga_01g00263	mRNA	TpMuguga_01g00263	NC_007344.1	536747	545059	R	TpMuguga_01g00263	complement(536747..545059)	Theileria parva strain Muguga	3503586
TpMuguga_01g00264	mRNA	GSH2	NC_007344.1	545634	547739	R	TpMuguga_01g00264	complement(join(545634..546147,546178..546962,546992..547739))	Theileria parva strain Muguga	3503587
TpMuguga_01g00265	mRNA	GSH2	NC_007344.1	548613	550755	D	TpMuguga_01g00265	join(548613..549328,549359..550140,550171..550755)	Theileria parva strain Muguga	3503588
TpMuguga_01g00266	mRNA	TpMuguga_01g00266	NC_007344.1	551169	553475	D	TpMuguga_01g00266	join(551169..551500,551536..552153,552185..553475)	Theileria parva strain Muguga	3503589
TpMuguga_01g00267	mRNA	TpMuguga_01g00267	NC_007344.1	553448	554056	R	TpMuguga_01g00267	complement(join(553448..553526,553557..553617,553649..553773,553805..553875,553920..554056))	Theileria parva strain Muguga	3503590
TpMuguga_01g00268	mRNA	TpMuguga_01g00268	NC_007344.1	554149	554585	R	TpMuguga_01g00268	complement(join(<554149..554411,554459..>554585))	Theileria parva strain Muguga	3503591
TpMuguga_01g00269	mRNA	DUS1	NC_007344.1	554790	556216	R	TpMuguga_01g00269	complement(join(<554790..554837,554855..554981,555013..555123,555155..555215,555255..555372,555405..555513,555545..555603,555636..555721,555754..555836,555868..555924,555959..556216))	Theileria parva strain Muguga	3503259
TpMuguga_01g00270	mRNA	TpMuguga_01g00270	NC_007344.1	556312	557056	R	TpMuguga_01g00270	complement(join(556312..556492,556529..556788,556830..557056))	Theileria parva strain Muguga	3503260
TpMuguga_01g00271	mRNA	TpMuguga_01g00271	NC_007344.1	557105	559189	R	TpMuguga_01g00271	complement(join(557105..557746,557777..558473,558504..559189))	Theileria parva strain Muguga	3503261
TpMuguga_01g00272	mRNA	TpMuguga_01g00272	NC_007344.1	559246	560192	D	TpMuguga_01g00272	join(559246..559551,559584..559706,559736..559819,559848..559937,560025..560192)	Theileria parva strain Muguga	3503262
TpMuguga_01g02345	mRNA	PIP5K7	NC_007344.1	560022	564862	R	TpMuguga_01g02345	complement(join(560022..561089,561146..561243,561344..561417,561503..563387,563420..563489,563521..563578,563609..564114,564146..>564862))	Theileria parva strain Muguga	3503392
TpMuguga_01g00276	mRNA	TCTP	NC_007344.1	565217	566060	D	TpMuguga_01g00276	join(565217..565462,565549..565612,565647..566060)	Theileria parva strain Muguga	3503393
TpMuguga_01g00277	mRNA	TpMuguga_01g00277	NC_007344.1	566038	567306	D	TpMuguga_01g00277	join(566038..566558,566651..566774,566816..566936,566971..567070,567143..567306)	Theileria parva strain Muguga	3503394
TpMuguga_01g00278	mRNA	fusA	NC_007344.1	567262	570459	R	TpMuguga_01g00278	complement(join(567262..567929,567964..568124,568156..568344,568382..568567,568707..568765,568797..568940,568972..569079,569110..569174,569211..569306,569391..569548,569614..569721,569751..569908,569938..570033,570078..570459))	Theileria parva strain Muguga	3503395
TpMuguga_01g00279	mRNA	DRG1	NC_007344.1	570527	572045	D	TpMuguga_01g00279	join(570527..570831,570891..571316,571382..571647,571735..572045)	Theileria parva strain Muguga	3503396
TpMuguga_01g00280	mRNA	TpMuguga_01g00280	NC_007344.1	572094	572686	D	TpMuguga_01g00280	join(572094..572356,572448..572686)	Theileria parva strain Muguga	3503027
TpMuguga_01g00281	mRNA	setd8-a	NC_007344.1	572699	576004	R	TpMuguga_01g00281	complement(join(572699..572776,572809..572994,573072..573150,573267..573424,573522..574487,574586..574926,575034..576004))	Theileria parva strain Muguga	3503028
TpMuguga_01g00282	mRNA	TpMuguga_01g00282	NC_007344.1	576115	577072	R	TpMuguga_01g00282	complement(join(576115..576332,576360..576445,576530..576597,576630..576712,576751..577072))	Theileria parva strain Muguga	3503029
TpMuguga_01g00283	mRNA	sal3	NC_007344.1	577141	581140	R	TpMuguga_01g00283	complement(join(577141..577378,577525..577990,578116..578789,578901..579121,579268..581140))	Theileria parva strain Muguga	3503030
TpMuguga_01g00284	mRNA	TpMuguga_01g00284	NC_007344.1	581225	583695	D	TpMuguga_01g00284	join(581225..581551,581620..581985,582016..582173,582206..582291,582368..582570,582602..582687,582757..583020,583107..583192,583263..583467,583501..583695)	Theileria parva strain Muguga	3503031
TpMuguga_01g00285	mRNA	TpMuguga_01g00285	NC_007344.1	583524	584680	R	TpMuguga_01g00285	complement(join(583524..583655,583753..583836,583868..583951,584008..584325,584408..584472,584555..584680))	Theileria parva strain Muguga	3502725
TpMuguga_01g00286	mRNA	SMC1	NC_007344.1	584843	589563	D	TpMuguga_01g00286	join(584843..585197,585230..585456,585578..585729,585836..586001,586036..586124,586386..586866,586913..589563)	Theileria parva strain Muguga	3502726
TpMuguga_01g00287	mRNA	Ufm1	NC_007344.1	589670	590401	R	TpMuguga_01g00287	complement(join(589670..589757,589843..589915,589944..590001,590124..590177,590211..590314,590354..590401))	Theileria parva strain Muguga	3502727
TpMuguga_01g00288	mRNA	TpMuguga_01g00288	NC_007344.1	590978	592952	D	TpMuguga_01g00288	<590978..592952	Theileria parva strain Muguga	3502728
TpMuguga_01g00289	mRNA	TpMuguga_01g00289	NC_007344.1	592954	597281	R	TpMuguga_01g00289	complement(join(<592954..593046,593076..593207,593237..593299,593329..593412,593547..593642,593726..595557,596333..597281))	Theileria parva strain Muguga	3502729
TpMuguga_01g00290	mRNA	RPT5A	NC_007344.1	597257	599911	D	TpMuguga_01g00290	join(597257..597750,597869..597973,598207..598423,598539..598595,598666..598730,598848..598974,599115..599336,599568..599680,599767..599911)	Theileria parva strain Muguga	3502730
TpMuguga_01g00291	mRNA	TpMuguga_01g00291	NC_007344.1	600400	602561	R	TpMuguga_01g00291	complement(join(600400..600567,600660..601458,601707..601848,601926..602059,602154..602561))	Theileria parva strain Muguga	3502731
TpMuguga_01g00292	mRNA	hagh	NC_007344.1	602497	604766	D	TpMuguga_01g00292	join(602497..602837,602995..603184,603638..603751,603799..603906,603987..604128,604315..604420,604455..604766)	Theileria parva strain Muguga	3502732
TpMuguga_01g00293	mRNA	RPL38	NC_007344.1	604650	604976	R	TpMuguga_01g00293	complement(604650..604976)	Theileria parva strain Muguga	3502733
TpMuguga_01g02155	mRNA	RPLP0	NC_007344.1	605686	607351	R	TpMuguga_01g02155	complement(join(605686..606986,607110..607351))	Theileria parva strain Muguga	3502734
TpMuguga_01g02685	mRNA	TpMuguga_01g02685	NC_007344.1	607337	611874	D	TpMuguga_01g02685	join(607337..607574,607683..607840,608072..608204,608312..608549,608706..608841,608976..609188,609218..609295,609325..609467,609505..609569,610546..611316,611435..>611874)	Theileria parva strain Muguga	3502735
TpMuguga_01g00297	mRNA	TpMuguga_01g00297	NC_007344.1	613153	613722	D	TpMuguga_01g00297	join(<613153..613417,613450..613544,613627..613722)	Theileria parva strain Muguga	3502565
TpMuguga_01g00298	mRNA	TpMuguga_01g00298	NC_007344.1	613943	614341	D	TpMuguga_01g00298	<613943..>614341	Theileria parva strain Muguga	3502566
TpMuguga_01g02875	mRNA	obg	NC_007344.1	615046	618289	R	TpMuguga_01g02875	complement(join(<615046..615425,615459..615639,615784..616062,616091..616197,616239..616348,616455..616521,616551..616635,617424..617674,617704..>618289))	Theileria parva strain Muguga	3502567
TpMuguga_01g00301	mRNA	CHIP	NC_007344.1	618410	620055	R	TpMuguga_01g00301	complement(join(<618410..618518,618548..618651,618731..618865,619248..619423,619489..619618,619750..>620055))	Theileria parva strain Muguga	3502569
TpMuguga_01g00302	mRNA	DHAPRD	NC_007344.1	620095	623121	R	TpMuguga_01g00302	complement(join(620095..620199,620556..620690,621389..621541,621723..622004,622275..622445,622566..622757,622863..622952,622987..623121))	Theileria parva strain Muguga	3502559
TpMuguga_01g00303	mRNA	Prpf4b	NC_007344.1	623150	627178	D	TpMuguga_01g00303	join(623150..623744,623854..623902,624041..624744,624859..625023,625379..625689,625916..626022,626109..626332,626752..627178)	Theileria parva strain Muguga	3502560
TpMuguga_01g00304	mRNA	RFESD	NC_007344.1	627153	627781	D	TpMuguga_01g00304	join(<627153..627188,627294..627336,627395..627471,627500..>627781)	Theileria parva strain Muguga	3502561
TpMuguga_01g00305	mRNA	TpMuguga_01g00305	NC_007344.1	628355	629303	R	TpMuguga_01g00305	complement(join(628355..628418,628450..628555,628586..628684,628852..628939,628975..629303))	Theileria parva strain Muguga	3502562
TpMuguga_01g02445	mRNA	TpMuguga_01g02445	NC_007344.1	629303	634293	D	TpMuguga_01g02445	join(<629303..631866,632499..633545,633576..>634293)	Theileria parva strain Muguga	3503323
TpMuguga_01g00308	mRNA	Exosc1	NC_007344.1	634391	635434	D	TpMuguga_01g00308	join(<634391..634519,634570..634721,634806..634890,634979..635060,635092..635158,635187..635264,635327..635434)	Theileria parva strain Muguga	3503324
TpMuguga_01g00309	mRNA	esf-2	NC_007344.1	635295	636315	R	TpMuguga_01g00309	complement(<635295..636315)	Theileria parva strain Muguga	3503325
TpMuguga_01g02410	mRNA	dnaJ	NC_007344.1	636261	638497	D	TpMuguga_01g02410	join(636261..636648,636706..636845,637595..637766,637814..637899,638060..638249,638279..638497)	Theileria parva strain Muguga	3503327
TpMuguga_01g00312	mRNA	TpMuguga_01g00312	NC_007344.1	638583	638999	R	TpMuguga_01g00312	complement(<638583..>638999)	Theileria parva strain Muguga	3503328
TpMuguga_01g00313	mRNA	TpMuguga_01g00313	NC_007344.1	639980	641724	D	TpMuguga_01g00313	join(<639980..640168,640592..640715,640751..640843,640884..640941,640973..641070,641365..641399,641450..641483,641513..641572,641606..641637,641671..>641724)	Theileria parva strain Muguga	3503329
TpMuguga_01g00314	mRNA	eif3g-a	NC_007344.1	641841	643545	D	TpMuguga_01g00314	join(<641841..641859,641890..642056,642412..642612,642810..642887,642918..642995,643133..643245,643371..643482,643513..>643545)	Theileria parva strain Muguga	3503604
TpMuguga_01g00315	mRNA	TpMuguga_01g00315	NC_007344.1	643367	645336	R	TpMuguga_01g00315	complement(join(643367..643627,644211..645336))	Theileria parva strain Muguga	3503605
TpMuguga_01g00316	mRNA	USP5	NC_007344.1	645316	649344	D	TpMuguga_01g00316	join(645316..645505,645563..645742,645785..645887,645936..646010,646462..646580,646737..646818,646849..646929,646983..647050,647127..647237,647271..647391,647422..647581,647612..647659,648002..648120,648151..648327,648370..648701,648882..649017,649047..649344)	Theileria parva strain Muguga	3503606
TpMuguga_01g00317	mRNA	TpMuguga_01g00317	NC_007344.1	650366	651272	R	TpMuguga_01g00317	complement(650366..651272)	Theileria parva strain Muguga	3503607
TpMuguga_01g02285	mRNA	TpMuguga_01g02285	NC_007344.1	651134	651604	D	TpMuguga_01g02285	651134..651604	Theileria parva strain Muguga	86047624
TpMuguga_01g02145	mRNA	DEGP9	NC_007344.1	651273	654467	R	TpMuguga_01g02145	complement(join(651273..651961,652073..652186,652277..652379,652532..652670,652802..653064,653367..653606,653687..653773,653802..654467))	Theileria parva strain Muguga	3503608
TpMuguga_01g00320	mRNA	TpMuguga_01g00320	NC_007344.1	654602	655557	R	TpMuguga_01g00320	complement(join(654602..654715,654751..654812,654925..654991,655167..655227,655259..655557))	Theileria parva strain Muguga	3503566
TpMuguga_01g00321	mRNA	TpMuguga_01g00321	NC_007344.1	656177	659602	D	TpMuguga_01g00321	join(656177..658591,659059..659332,659463..659602)	Theileria parva strain Muguga	3503567
TpMuguga_01g00322	mRNA	TpMuguga_01g00322	NC_007344.1	659603	660268	D	TpMuguga_01g00322	join(659603..659918,660057..660268)	Theileria parva strain Muguga	3503568
TpMuguga_01g00323	mRNA	TpMuguga_01g00323	NC_007344.1	660421	661262	D	TpMuguga_01g00323	join(660421..660734,661108..661262)	Theileria parva strain Muguga	3503569
TpMuguga_01g00324	mRNA	TpMuguga_01g00324	NC_007344.1	661336	664049	R	TpMuguga_01g00324	complement(join(661336..661733,661925..662700,662977..663103,663318..663639,663674..664049))	Theileria parva strain Muguga	3503570
TpMuguga_01g00325	mRNA	TpMuguga_01g00325	NC_007344.1	665432	669437	D	TpMuguga_01g00325	665432..669437	Theileria parva strain Muguga	3502530
TpMuguga_01g00326	mRNA	TpMuguga_01g00326	NC_007344.1	669633	670691	R	TpMuguga_01g00326	complement(join(669633..670041,670211..670460,670545..670691))	Theileria parva strain Muguga	3502531
TpMuguga_01g00327	mRNA	TpMuguga_01g00327	NC_007344.1	670684	677515	R	TpMuguga_01g00327	complement(join(670684..673981,674139..676052,676082..676246,676372..677361,677401..>677515))	Theileria parva strain Muguga	3502532
TpMuguga_01g00329	mRNA	TpMuguga_01g00329	NC_007344.1	677448	678942	R	TpMuguga_01g00329	complement(join(677448..677898,677935..678024,678076..678163,678239..678444,678522..678942))	Theileria parva strain Muguga	3502533
TpMuguga_01g00330	mRNA	TpMuguga_01g00330	NC_007344.1	678943	680336	R	TpMuguga_01g00330	complement(join(678943..678994,679028..679265,679296..679315,679352..679450,679519..679679,679760..679826,679858..679896,679927..680088,680184..680336))	Theileria parva strain Muguga	3502535
TpMuguga_01g00331	mRNA	NOB1	NC_007344.1	680424	681886	R	TpMuguga_01g00331	complement(join(680424..680577,680667..680964,681030..681886))	Theileria parva strain Muguga	3503598
TpMuguga_01g00332	mRNA	trappc3	NC_007344.1	681701	682886	D	TpMuguga_01g00332	join(681701..682071,682111..682208,682244..682343,682439..682621,682677..682760,682791..682886)	Theileria parva strain Muguga	3503599
TpMuguga_01g00333	mRNA	TpMuguga_01g00333	NC_007344.1	682902	683880	R	TpMuguga_01g00333	complement(join(<682902..683270,683537..683731,683764..>683880))	Theileria parva strain Muguga	3503600
TpMuguga_01g00334	mRNA	TpMuguga_01g00334	NC_007344.1	684125	685369	R	TpMuguga_01g00334	complement(<684125..>685369)	Theileria parva strain Muguga	3503601
TpMuguga_01g00335	mRNA	eIF-2gamma	NC_007344.1	685891	688043	D	TpMuguga_01g00335	join(685891..686196,686227..686305,686398..686509,686552..686689,686764..687017,687091..687403,687516..687701,687733..688043)	Theileria parva strain Muguga	3503602
TpMuguga_01g00336	mRNA	TpMuguga_01g00336	NC_007344.1	688387	700281	R	TpMuguga_01g00336	complement(join(<688387..697844,697902..>700281))	Theileria parva strain Muguga	3503603
TpMuguga_01g00337	mRNA	TpMuguga_01g00337	NC_007344.1	702403	702990	D	TpMuguga_01g00337	join(<702403..702615,702655..>702990)	Theileria parva strain Muguga	3502947
TpMuguga_01g00338	mRNA	TpMuguga_01g00338	NC_007344.1	702530	703738	R	TpMuguga_01g00338	complement(702530..703738)	Theileria parva strain Muguga	3502948
TpMuguga_01g00339	mRNA	TpMuguga_01g00339	NC_007344.1	703754	704926	R	TpMuguga_01g00339	complement(join(703754..703812,703861..703932,703997..704092,704128..704216,704313..704437,704471..704619,704680..704926))	Theileria parva strain Muguga	3502949
TpMuguga_01g00340	mRNA	Ppie	NC_007344.1	705022	705354	D	TpMuguga_01g00340	join(<705022..705148,705227..>705354)	Theileria parva strain Muguga	3502950
TpMuguga_01g00341	mRNA	PAT07	NC_007344.1	705383	706543	R	TpMuguga_01g00341	complement(join(705383..705448,705486..705631,705675..705748,705804..705912,705945..706032,706068..706279,706311..706398,706432..706543))	Theileria parva strain Muguga	3502951
TpMuguga_01g00342	mRNA	TpMuguga_01g00342	NC_007344.1	706642	711882	D	TpMuguga_01g00342	<706642..>711882	Theileria parva strain Muguga	3502952
TpMuguga_01g00343	mRNA	TpMuguga_01g00343	NC_007344.1	712086	713469	D	TpMuguga_01g00343	join(<712086..712359,712397..712518,712620..712684,712750..712852,712915..712983,713016..713117,713167..713247,713278..>713469)	Theileria parva strain Muguga	3502953
TpMuguga_01g00344	mRNA	Znf259	NC_007344.1	713478	715558	R	TpMuguga_01g00344	complement(join(713478..714031,714093..714305,714362..714533,714568..714678,714713..715008,715134..715182,715216..715334,715369..715558))	Theileria parva strain Muguga	3503526
TpMuguga_01g00345	mRNA	CNOT4	NC_007344.1	715681	717240	D	TpMuguga_01g00345	<715681..>717240	Theileria parva strain Muguga	3503527
TpMuguga_01g00346	mRNA	TpMuguga_01g00346	NC_007344.1	716699	718505	R	TpMuguga_01g00346	complement(join(716699..716824,716950..717996,718029..>718505))	Theileria parva strain Muguga	3503528
TpMuguga_01g00347	mRNA	SBDS	NC_007344.1	718819	720260	R	TpMuguga_01g00347	complement(join(<718819..719636,719701..719802,719880..719963,720003..720065,720134..>720260))	Theileria parva strain Muguga	3503529
TpMuguga_01g00348	mRNA	TpMuguga_01g00348	NC_007344.1	720396	721243	D	TpMuguga_01g00348	720396..721243	Theileria parva strain Muguga	3503530
TpMuguga_01g00349	mRNA	TpMuguga_01g00349	NC_007344.1	721370	723153	D	TpMuguga_01g00349	join(<721370..721852,721885..722139,722222..722533,722572..>723153)	Theileria parva strain Muguga	3503544
TpMuguga_01g00350	mRNA	TpMuguga_01g00350	NC_007344.1	723119	724644	R	TpMuguga_01g00350	complement(join(723119..723486,723519..723631,723673..723721,723762..723830,723859..724049,724099..724262,724373..724418,724482..>724644))	Theileria parva strain Muguga	3503545
TpMuguga_01g00351	mRNA	RPS18	NC_007344.1	724697	725366	R	TpMuguga_01g00351	complement(724697..725366)	Theileria parva strain Muguga	3503546
TpMuguga_01g00352	mRNA	RPL11A	NC_007344.1	725652	726561	R	TpMuguga_01g00352	complement(join(725652..725828,725908..726193,726225..726561))	Theileria parva strain Muguga	3503547
TpMuguga_01g02505	mRNA	TpMuguga_01g02505	NC_007344.1	726587	729089	R	TpMuguga_01g02505	complement(join(726587..727027,727135..727198,727230..727387,727419..727590,727638..727705,727773..727885,727945..728060,728125..728208,728279..728777,728834..729089))	Theileria parva strain Muguga	3503548
TpMuguga_01g00355	mRNA	TpMuguga_01g00355	NC_007344.1	729241	731422	R	TpMuguga_01g00355	complement(729241..731422)	Theileria parva strain Muguga	3502891
TpMuguga_01g00356	mRNA	ARP6	NC_007344.1	731551	733907	R	TpMuguga_01g00356	complement(join(731551..731961,732046..732218,732288..732621,732688..732819,732883..733907))	Theileria parva strain Muguga	3502892
TpMuguga_01g00357	mRNA	TpMuguga_01g00357	NC_007344.1	733949	734632	D	TpMuguga_01g00357	join(733949..734084,734184..734420,734463..734632)	Theileria parva strain Muguga	3502893
TpMuguga_01g00358	mRNA	TpMuguga_01g00358	NC_007344.1	734645	737488	R	TpMuguga_01g00358	complement(join(734645..735494,735583..735813,735890..737020,737109..737488))	Theileria parva strain Muguga	3502894
TpMuguga_01g00359	mRNA	MPK16	NC_007344.1	738206	740524	D	TpMuguga_01g00359	738206..740524	Theileria parva strain Muguga	3502895
TpMuguga_01g02005	mRNA	TBC1D2	NC_007344.1	740668	742446	R	TpMuguga_01g02005	complement(join(740668..740970,741004..741073,741119..741215,741296..741410,741440..741608,741674..741742,741774..741866,741906..742446))	Theileria parva strain Muguga	3502896
TpMuguga_01g00362	mRNA	TpMuguga_01g00362	NC_007344.1	742458	744591	R	TpMuguga_01g00362	complement(join(742458..742680,742757..743055,743087..743169,743203..743267,743310..743357,743400..743647,743687..743784,743863..743949,743986..744118,744150..744591))	Theileria parva strain Muguga	3502598
TpMuguga_01g00363	mRNA	guaC	NC_007344.1	744590	745892	D	TpMuguga_01g00363	744590..745892	Theileria parva strain Muguga	3502599
TpMuguga_01g00364	mRNA	PA2G4	NC_007344.1	746537	747919	D	TpMuguga_01g00364	join(<746537..746693,746761..746852,746884..746993,747062..747800,747866..>747919)	Theileria parva strain Muguga	3502600
TpMuguga_01g00365	mRNA	TpMuguga_01g00365	NC_007344.1	748111	749356	D	TpMuguga_01g00365	join(748111..748359,748516..749356)	Theileria parva strain Muguga	3502601
TpMuguga_01g00366	mRNA	TpMuguga_01g00366	NC_007344.1	749384	751935	D	TpMuguga_01g00366	join(749384..749580,749629..749754,749819..749905,749948..750018,750049..750091,750121..750196,750227..750243,750274..750794,750853..751129,751163..751336,751372..751467,751508..751703,751735..751935)	Theileria parva strain Muguga	3502602
TpMuguga_01g00367	mRNA	TpMuguga_01g00367	NC_007344.1	752164	752712	D	TpMuguga_01g00367	<752164..>752712	Theileria parva strain Muguga	3502603
TpMuguga_01g00368	mRNA	D2Wsu81e	NC_007344.1	752846	754555	R	TpMuguga_01g00368	complement(join(752846..753045,753107..753260,753334..753629,753661..753736,753797..753895,753925..754015,754077..754154,754190..754329,754388..754555))	Theileria parva strain Muguga	3502536
TpMuguga_01g00369	mRNA	rplM	NC_007344.1	754569	755804	R	TpMuguga_01g00369	complement(join(754569..754918,754982..755040,755112..755176,755219..755387,755452..755584,755697..755804))	Theileria parva strain Muguga	3502537
TpMuguga_01g00370	mRNA	TpMuguga_01g00370	NC_007344.1	755855	757713	R	TpMuguga_01g00370	complement(join(755855..755948,756022..756141,756202..756244,756286..756393,756433..756547,756583..756885,756956..757030,757060..757180,757240..757320,757385..757477,757511..757713))	Theileria parva strain Muguga	3502538
TpMuguga_01g02775	mRNA	TpMuguga_01g02775	NC_007344.1	757761	759293	R	TpMuguga_01g02775	complement(join(757761..757835,757886..758115,758149..758278,758313..758410,758490..758548,758582..758771,758802..758942,759024..759293))	Theileria parva strain Muguga	3502540
TpMuguga_01g00373	mRNA	SEC24A	NC_007344.1	759439	763044	R	TpMuguga_01g00373	complement(join(759439..761199,761293..763044))	Theileria parva strain Muguga	3502459
TpMuguga_01g00374	mRNA	ddx27	NC_007344.1	763122	765204	D	TpMuguga_01g00374	join(763122..763433,763469..763561,763595..763654,763715..763839,763872..763989,764037..764207,764239..764316,764373..764568,764605..764682,764715..764852,764884..765204)	Theileria parva strain Muguga	3502460
TpMuguga_01g00375	mRNA	TpMuguga_01g00375	NC_007344.1	765384	766975	D	TpMuguga_01g00375	join(765384..765692,765801..765917,765963..766133,766167..766245,766301..766420,766515..766698,766748..766975)	Theileria parva strain Muguga	3502461
TpMuguga_01g00376	mRNA	SNRPF	NC_007344.1	766997	767583	R	TpMuguga_01g00376	complement(join(766997..767063,767103..767208,767252..767342,767392..767583))	Theileria parva strain Muguga	3502462
TpMuguga_01g00377	mRNA	TpMuguga_01g00377	NC_007344.1	767539	769017	D	TpMuguga_01g00377	join(767539..767745,767811..767925,767958..767993,768064..768185,768238..768294,768324..768392,768432..768561,768637..768722,768789..769017)	Theileria parva strain Muguga	3502463
TpMuguga_01g00378	mRNA	TpMuguga_01g00378	NC_007344.1	769018	770044	D	TpMuguga_01g00378	769018..>770044	Theileria parva strain Muguga	3502488
TpMuguga_01g00379	mRNA	TpMuguga_01g00379	NC_007344.1	770775	771519	D	TpMuguga_01g00379	<770775..771519	Theileria parva strain Muguga	3502489
TpMuguga_01g00380	mRNA	TpMuguga_01g00380	NC_007344.1	771931	775768	D	TpMuguga_01g00380	join(771931..774322,774357..775768)	Theileria parva strain Muguga	3502490
TpMuguga_01g00381	mRNA	dut	NC_007344.1	775884	776741	D	TpMuguga_01g00381	join(775884..776311,776433..776569,776607..776741)	Theileria parva strain Muguga	3502491
TpMuguga_01g00382	mRNA	TpMuguga_01g00382	NC_007344.1	776774	779609	R	TpMuguga_01g00382	complement(join(776774..776939,777064..777860,777998..779609))	Theileria parva strain Muguga	3502492
TpMuguga_01g02460	mRNA	TpMuguga_01g02460	NC_007344.1	779599	781135	R	TpMuguga_01g02460	complement(join(779599..780329,780418..>781135))	Theileria parva strain Muguga	3502494
TpMuguga_01g00385	mRNA	TpMuguga_01g00385	NC_007344.1	781493	782695	D	TpMuguga_01g00385	join(781493..782266,782293..782387,782417..782499,782565..782695)	Theileria parva strain Muguga	3502761
TpMuguga_01g00386	mRNA	PEO1	NC_007344.1	782528	788891	R	TpMuguga_01g00386	complement(join(782528..782832,782862..782993,783038..783130,783162..783370,783423..783462,783527..783744,783812..784033,784182..786515,786582..787874,787955..788598,788707..788891))	Theileria parva strain Muguga	3502762
TpMuguga_01g02475	mRNA	TpMuguga_01g02475	NC_007344.1	789454	792415	D	TpMuguga_01g02475	join(789454..789617,789654..790459,790491..790640,790730..790988,791035..791121,791220..791298,791337..791628,791700..791794,791876..792002,792035..792124,792154..792237,792267..792415)	Theileria parva strain Muguga	3502764
TpMuguga_01g00389	mRNA	ATPB	NC_007344.1	792536	794761	R	TpMuguga_01g00389	complement(join(792536..792813,792996..793562,793707..794761))	Theileria parva strain Muguga	3502765
TpMuguga_01g00390	mRNA	SHM3	NC_007344.1	794873	796798	R	TpMuguga_01g00390	complement(join(794873..795006,795138..795492,795548..795848,795984..796441,796486..796798))	Theileria parva strain Muguga	3502778
TpMuguga_01g00391	mRNA	TpMuguga_01g00391	NC_007344.1	796966	799283	R	TpMuguga_01g00391	complement(join(<796966..798741,798773..798936,799011..799283))	Theileria parva strain Muguga	3502779
TpMuguga_01g00392	mRNA	TpMuguga_01g00392	NC_007344.1	799368	800360	R	TpMuguga_01g00392	complement(799368..800360)	Theileria parva strain Muguga	3502780
TpMuguga_01g00393	mRNA	TpMuguga_01g00393	NC_007344.1	800676	801272	D	TpMuguga_01g00393	800676..801272	Theileria parva strain Muguga	3502781
TpMuguga_01g00394	mRNA	TpMuguga_01g00394	NC_007344.1	801270	804559	R	TpMuguga_01g00394	complement(join(801270..801467,801510..801620,801714..801823,801862..803065,803155..803243,803334..804559))	Theileria parva strain Muguga	3502782
TpMuguga_01g00395	mRNA	Chmp1a	NC_007344.1	804647	805878	R	TpMuguga_01g00395	complement(join(804647..804950,805011..805121,805193..805399,805550..805878))	Theileria parva strain Muguga	3502783
TpMuguga_01g00396	mRNA	dis3	NC_007344.1	805718	808984	D	TpMuguga_01g00396	<805718..>808984	Theileria parva strain Muguga	3502819
TpMuguga_01g00397	mRNA	MPA1	NC_007344.1	809129	812430	D	TpMuguga_01g00397	join(809129..810849,810966..812430)	Theileria parva strain Muguga	3502820
TpMuguga_01g00398	mRNA	TpMuguga_01g00398	NC_007344.1	812789	813997	R	TpMuguga_01g00398	complement(join(812789..812987,813120..813190,813221..813566,813666..813997))	Theileria parva strain Muguga	3502821
TpMuguga_01g00399	mRNA	TpMuguga_01g00399	NC_007344.1	813974	815299	R	TpMuguga_01g00399	complement(join(813974..814134,814166..814270,814337..814565,814649..815033,815207..815299))	Theileria parva strain Muguga	3502822
TpMuguga_01g00400	mRNA	TpMuguga_01g00400	NC_007344.1	815409	816857	R	TpMuguga_01g00400	complement(join(815409..815476,815583..815992,816034..816194,816302..816337,816373..816480,816570..816663,816697..816857))	Theileria parva strain Muguga	3502823
TpMuguga_01g00401	mRNA	TpMuguga_01g00401	NC_007344.1	816858	818581	R	TpMuguga_01g00401	complement(join(816858..817585,817677..818581))	Theileria parva strain Muguga	3502824
TpMuguga_01g00402	mRNA	TpMuguga_01g00402	NC_007344.1	818674	819087	D	TpMuguga_01g00402	join(<818674..818775,818926..>819087)	Theileria parva strain Muguga	3502825
TpMuguga_01g00403	mRNA	TpMuguga_01g00403	NC_007344.1	819423	821550	D	TpMuguga_01g00403	join(<819423..820215,820384..821115,821223..821328,821436..>821550)	Theileria parva strain Muguga	3502915
TpMuguga_01g00404	mRNA	TpMuguga_01g00404	NC_007344.1	821625	822680	D	TpMuguga_01g00404	<821625..>822680	Theileria parva strain Muguga	3502916
TpMuguga_01g00405	mRNA	TpMuguga_01g00405	NC_007344.1	822796	825115	R	TpMuguga_01g00405	complement(join(<822796..823246,823316..823460,823491..823600,823677..825115))	Theileria parva strain Muguga	3502917
TpMuguga_01g02525	mRNA	TpMuguga_01g02525	NC_007344.1	825176	831648	D	TpMuguga_01g02525	join(825176..828208,828298..828402,828507..830721,830860..830961,831035..831102,831240..831648)	Theileria parva strain Muguga	3502919
TpMuguga_01g00408	mRNA	TpMuguga_01g00408	NC_007344.1	832481	835390	D	TpMuguga_01g00408	<832481..>835390	Theileria parva strain Muguga	3502920
TpMuguga_01g00409	mRNA	TpMuguga_01g00409	NC_007344.1	835664	836944	R	TpMuguga_01g00409	complement(join(835664..836292,836371..836944))	Theileria parva strain Muguga	3503112
TpMuguga_01g00410	mRNA	TpMuguga_01g00410	NC_007344.1	837007	837622	D	TpMuguga_01g00410	join(837007..837234,837314..837500,837536..837622)	Theileria parva strain Muguga	3503113
TpMuguga_01g02735	mRNA	TpMuguga_01g02735	NC_007344.1	837623	839215	D	TpMuguga_01g02735	join(837623..837906,838000..838041,838078..838099,838131..838157,838219..838258,838290..838355,838435..838500,838534..838827,838981..839049,839088..839124,839154..839215)	Theileria parva strain Muguga	3503115
TpMuguga_01g00413	mRNA	RPL9	NC_007344.1	839347	840033	R	TpMuguga_01g00413	complement(join(<839347..839870,839988..>840033))	Theileria parva strain Muguga	3503116
TpMuguga_01g00414	mRNA	TpMuguga_01g00414	NC_007344.1	840153	841627	R	TpMuguga_01g00414	complement(join(<840153..840289,840391..840483,840515..840581,840743..840792,840824..840994,841099..841627))	Theileria parva strain Muguga	3503117
TpMuguga_01g02865	mRNA	TTC27	NC_007344.1	841675	845387	D	TpMuguga_01g02865	join(<841675..842670,842761..843388,843459..843584,843672..843743,843801..843835,843867..843956,844022..844113,844204..844468,844618..844719,844761..844817,844914..>845387)	Theileria parva strain Muguga	3503179
TpMuguga_01g02040	mRNA	TpMuguga_01g02040	NC_007344.1	845644	846195	D	TpMuguga_01g02040	join(845644..845772,845951..846195)	Theileria parva strain Muguga	86047608
TpMuguga_01g02325	mRNA	TpMuguga_01g02325	NC_007344.1	846312	848672	R	TpMuguga_01g02325	complement(join(<846312..847270,847384..847485,847640..>848672))	Theileria parva strain Muguga	3503180
TpMuguga_01g02830	mRNA	TpMuguga_01g02830	NC_007344.1	848811	849464	R	TpMuguga_01g02830	complement(join(848811..849035,849132..849278,849345..849464))	Theileria parva strain Muguga	86047661
TpMuguga_01g00420	mRNA	TpMuguga_01g00420	NC_007344.1	849506	852657	R	TpMuguga_01g00420	complement(849506..852657)	Theileria parva strain Muguga	3503182
TpMuguga_01g00421	mRNA	TpMuguga_01g00421	NC_007344.1	853078	857769	D	TpMuguga_01g00421	join(853078..856089,856186..>857769)	Theileria parva strain Muguga	3503184
TpMuguga_01g00422	mRNA	prfA	NC_007344.1	857739	859486	D	TpMuguga_01g00422	join(857739..858145,858251..858301,858337..858392,858460..858538,858657..858827,858858..858922,859029..859137,859272..859486)	Theileria parva strain Muguga	3502856
TpMuguga_01g02800	mRNA	TpMuguga_01g02800	NC_007344.1	859471	861112	D	TpMuguga_01g02800	join(859471..860018,860120..860655,860793..861112)	Theileria parva strain Muguga	3502858
TpMuguga_01g00425	mRNA	TpMuguga_01g00425	NC_007344.1	861122	862083	D	TpMuguga_01g00425	join(861122..861539,861571..861634,861775..861942,861973..862083)	Theileria parva strain Muguga	3502859
TpMuguga_01g00426	mRNA	TpMuguga_01g00426	NC_007344.1	862037	864674	R	TpMuguga_01g00426	complement(join(862037..863533,863679..864674))	Theileria parva strain Muguga	3502860
TpMuguga_01g02125	mRNA	TpMuguga_01g02125	NC_007344.1	864685	870333	R	TpMuguga_01g02125	complement(join(864685..867419,867544..867933,868052..870333))	Theileria parva strain Muguga	3502641
TpMuguga_01g00430	mRNA	TpMuguga_01g00430	NC_007344.1	871126	874627	D	TpMuguga_01g00430	join(871126..871876,871952..872547,872641..872870,872987..874627)	Theileria parva strain Muguga	3502642
TpMuguga_01g00431	mRNA	TpMuguga_01g00431	NC_007344.1	874695	876376	R	TpMuguga_01g00431	complement(<874695..876376)	Theileria parva strain Muguga	3502643
TpMuguga_01g00432	mRNA	TpMuguga_01g00432	NC_007344.1	876362	877267	R	TpMuguga_01g00432	complement(join(876362..876491,876522..876664,876698..876810,876844..876933,876966..877090,877120..877267))	Theileria parva strain Muguga	3502644
TpMuguga_01g00433	mRNA	TpMuguga_01g00433	NC_007344.1	877415	883005	R	TpMuguga_01g00433	complement(join(<877415..878323,878353..>883005))	Theileria parva strain Muguga	3502646
TpMuguga_01g00434	mRNA	TpMuguga_01g00434	NC_007344.1	883125	885656	R	TpMuguga_01g00434	complement(join(<883125..883220,883375..884822,884854..885543,885575..>885656))	Theileria parva strain Muguga	3502647
TpMuguga_01g00435	mRNA	TpMuguga_01g00435	NC_007344.1	886195	887313	R	TpMuguga_01g00435	complement(join(<886195..886280,887058..>887313))	Theileria parva strain Muguga	3502428
TpMuguga_01g00436	mRNA	TpMuguga_01g00436	NC_007344.1	887389	887942	R	TpMuguga_01g00436	complement(join(<887389..887663,887734..887871,887900..>887942))	Theileria parva strain Muguga	3502429
TpMuguga_01g00437	mRNA	TpMuguga_01g00437	NC_007344.1	888521	892620	R	TpMuguga_01g00437	complement(join(<888521..892056,892086..>892620))	Theileria parva strain Muguga	3502430
TpMuguga_01g00438	mRNA	TpMuguga_01g00438	NC_007344.1	892689	897029	R	TpMuguga_01g00438	complement(<892689..>897029)	Theileria parva strain Muguga	3502431
TpMuguga_01g00439	mRNA	GTF3C5	NC_007344.1	897226	898825	D	TpMuguga_01g00439	join(897226..897487,897523..897599,897632..898078,898108..898251,898280..898353,898384..898678,898711..898825)	Theileria parva strain Muguga	3502432
TpMuguga_01g00440	mRNA	FPGS3	NC_007344.1	898811	900507	D	TpMuguga_01g00440	join(898811..899060,899098..899249,899290..899425,899458..899671,899711..899939,899976..900190,900233..900324,900357..900507)	Theileria parva strain Muguga	3502433
TpMuguga_01g02100	mRNA	TpMuguga_01g02100	NC_007344.1	900471	908692	R	TpMuguga_01g02100	complement(join(<900471..901637,901758..904627,904743..907900,907932..908105,908135..908250,908281..908537,908593..>908692))	Theileria parva strain Muguga	3502542
TpMuguga_01g02470	mRNA	TpMuguga_01g02470	NC_007344.1	908782	909422	R	TpMuguga_01g02470	complement(join(908782..909004,909046..909422))	Theileria parva strain Muguga	86047635
TpMuguga_01g00443	mRNA	TpMuguga_01g00443	NC_007344.1	909472	910653	D	TpMuguga_01g00443	join(909472..910199,910229..910292,910324..910368,910407..910483,910523..910653)	Theileria parva strain Muguga	3502543
TpMuguga_01g00444	mRNA	TpMuguga_01g00444	NC_007344.1	910654	912247	D	TpMuguga_01g00444	join(910654..910777,910825..910908,910951..911013,911043..911123,911154..911230,911263..911329,911360..911404,911437..911530,911563..911615,911648..911802,911910..911973,912005..912046,912081..912247)	Theileria parva strain Muguga	3502544
TpMuguga_01g00445	mRNA	Trit1	NC_007344.1	912248	913767	D	TpMuguga_01g00445	join(912248..912502,912555..912692,912723..912828,912859..913069,913110..913194,913227..913269,913300..913347,913438..913620,913650..913767)	Theileria parva strain Muguga	3502545
TpMuguga_01g01232	mRNA	TpMuguga_01g01232	NC_007344.1	913590	914506	R	TpMuguga_01g01232	complement(join(913590..913939,913973..914258,914335..914506))	Theileria parva strain Muguga	3503078
TpMuguga_01g01233	mRNA	TpMuguga_01g01233	NC_007344.1	914596	916812	D	TpMuguga_01g01233	join(<914596..914944,915035..916812)	Theileria parva strain Muguga	3503079
TpMuguga_01g00456	mRNA	msh2	NC_007344.1	926391	929882	R	TpMuguga_01g00456	complement(join(<926391..926534,926739..926884,927024..927126,927248..927362,927391..927506,927736..928859,928990..929232,929469..929604,929637..>929882))	Theileria parva strain Muguga	3503084
TpMuguga_01g02000	mRNA	TpMuguga_01g02000	NC_007344.1	929984	936779	R	TpMuguga_01g02000	complement(join(929984..930083,930503..930878,931654..934963,935385..935574,935846..936135,936228..936779))	Theileria parva strain Muguga	3503572
TpMuguga_01g00459	mRNA	DNLZ	NC_007344.1	936857	937815	D	TpMuguga_01g00459	join(936857..937111,937160..937278,937414..937465,937602..937700,937730..937815)	Theileria parva strain Muguga	3503573
TpMuguga_01g00460	mRNA	Gars	NC_007344.1	938662	941286	R	TpMuguga_01g00460	complement(<938662..>941286)	Theileria parva strain Muguga	3503574
TpMuguga_01g00461	mRNA	TpMuguga_01g00461	NC_007344.1	941609	942771	D	TpMuguga_01g00461	join(941609..942230,942267..942771)	Theileria parva strain Muguga	3503575
TpMuguga_01g00462	mRNA	TpMuguga_01g00462	NC_007344.1	943229	944725	D	TpMuguga_01g00462	<943229..>944725	Theileria parva strain Muguga	3503576
TpMuguga_01g00463	mRNA	TpMuguga_01g00463	NC_007344.1	945832	947970	D	TpMuguga_01g00463	<945832..>947970	Theileria parva strain Muguga	3503577
TpMuguga_01g00464	mRNA	TpMuguga_01g00464	NC_007344.1	948456	950456	D	TpMuguga_01g00464	<948456..>950456	Theileria parva strain Muguga	3503297
TpMuguga_01g00465	mRNA	GCN5	NC_007344.1	950830	952886	R	TpMuguga_01g00465	complement(950830..952886)	Theileria parva strain Muguga	3503298
TpMuguga_01g00466	mRNA	dopey2	NC_007344.1	953078	961982	R	TpMuguga_01g00466	complement(join(953078..953494,953684..>961982))	Theileria parva strain Muguga	3503299
TpMuguga_01g00467	mRNA	TpMuguga_01g00467	NC_007344.1	962321	963970	R	TpMuguga_01g00467	complement(962321..963970)	Theileria parva strain Muguga	3503300
TpMuguga_01g00468	mRNA	TpMuguga_01g00468	NC_007344.1	964077	966737	D	TpMuguga_01g00468	join(964077..964470,964505..965293,965325..965416,965446..965513,965573..965707,965847..965937,965989..966179,966267..966515,966548..966737)	Theileria parva strain Muguga	3503301
TpMuguga_01g02430	mRNA	TpMuguga_01g02430	NC_007344.1	966775	967261	D	TpMuguga_01g02430	join(<966775..966918,966951..967046,967103..967261)	Theileria parva strain Muguga	3503302
TpMuguga_01g02490	mRNA	ROM6	NC_007344.1	967438	969099	D	TpMuguga_01g02490	join(967438..968348,968381..968545,968614..969048,969083..>969099)	Theileria parva strain Muguga	3503303
TpMuguga_01g00471	mRNA	trxB/A	NC_007344.1	969241	970132	D	TpMuguga_01g00471	join(<969241..969483,969524..969718,969751..969809,969839..969872,969902..970132)	Theileria parva strain Muguga	3503372
TpMuguga_01g00472	mRNA	TpMuguga_01g00472	NC_007344.1	970182	970624	R	TpMuguga_01g00472	complement(join(<970182..970316,970346..970404,970443..970509,970540..970624))	Theileria parva strain Muguga	3503373
TpMuguga_01g00473	mRNA	TpMuguga_01g00473	NC_007344.1	970963	972029	R	TpMuguga_01g00473	complement(join(970963..971313,971344..971445,971477..971579,971620..971899,971934..972029))	Theileria parva strain Muguga	3503374
TpMuguga_01g00474	mRNA	TpMuguga_01g00474	NC_007344.1	972011	974763	R	TpMuguga_01g00474	complement(join(972011..972140,972228..972348,972379..972739,972813..974763))	Theileria parva strain Muguga	3503375
TpMuguga_01g00475	mRNA	TXNL1	NC_007344.1	974852	975802	D	TpMuguga_01g00475	join(974852..975057,975088..975359,975460..975485,975514..975604,975637..975710,975739..975802)	Theileria parva strain Muguga	3503376
TpMuguga_01g00476	mRNA	TpMuguga_01g00476	NC_007344.1	975811	977405	R	TpMuguga_01g00476	complement(join(975811..976000,976057..976242,976305..977405))	Theileria parva strain Muguga	3503377
TpMuguga_01g00477	mRNA	TpMuguga_01g00477	NC_007344.1	977477	978516	D	TpMuguga_01g00477	join(<977477..977489,978386..>978516)	Theileria parva strain Muguga	3503378
TpMuguga_01g00478	mRNA	TpMuguga_01g00478	NC_007344.1	979394	981798	D	TpMuguga_01g00478	<979394..981798	Theileria parva strain Muguga	3503379
TpMuguga_01g00479	mRNA	hyou1	NC_007344.1	981927	985142	R	TpMuguga_01g00479	complement(<981927..>985142)	Theileria parva strain Muguga	3503380
TpMuguga_01g00480	mRNA	gcv1	NC_007344.1	985376	986765	R	TpMuguga_01g00480	complement(join(985376..985996,986028..986193,986224..986445,986476..>986765))	Theileria parva strain Muguga	3503381
TpMuguga_01g00482	mRNA	TpMuguga_01g00482	NC_007344.1	988019	991012	D	TpMuguga_01g00482	<988019..>991012	Theileria parva strain Muguga	3503383
TpMuguga_01g00483	mRNA	PRPF4	NC_007344.1	991069	992917	R	TpMuguga_01g00483	complement(991069..992917)	Theileria parva strain Muguga	3503384
TpMuguga_01g00484	mRNA	TpMuguga_01g00484	NC_007344.1	993537	1002516	D	TpMuguga_01g00484	join(<993537..993715,993770..993980,994016..996325,996391..996766,996833..>1002516)	Theileria parva strain Muguga	3503285
TpMuguga_01g02390	mRNA	TpMuguga_01g02390	NC_007344.1	1002684	1011003	D	TpMuguga_01g02390	join(1002684..1003191,1003222..1008192,1008304..1009016,1009047..1009338,1009439..>1011003)	Theileria parva strain Muguga	3503287
TpMuguga_01g00488	mRNA	Ivns1abp	NC_007344.1	1011051	1013466	D	TpMuguga_01g00488	join(1011051..1011631,1011811..1012247,1012322..1013187,1013334..1013466)	Theileria parva strain Muguga	3503289
TpMuguga_01g00489	mRNA	UAP1	NC_007344.1	1013648	1015249	D	TpMuguga_01g00489	join(<1013648..1014928,1014997..1015249)	Theileria parva strain Muguga	3503290
TpMuguga_01g00490	mRNA	TpMuguga_01g00490	NC_007344.1	1015337	1017364	R	TpMuguga_01g00490	complement(join(1015337..1015903,1016037..1016999,1017032..1017166,1017245..1017364))	Theileria parva strain Muguga	3503444
TpMuguga_01g02135	mRNA	TpMuguga_01g02135	NC_007344.1	1017448	1020045	D	TpMuguga_01g02135	join(1017448..1019577,1019678..>1020045)	Theileria parva strain Muguga	3503446
TpMuguga_01g00493	mRNA	TpMuguga_01g00493	NC_007344.1	1020223	1020927	D	TpMuguga_01g00493	<1020223..>1020927	Theileria parva strain Muguga	3503447
TpMuguga_01g00494	mRNA	TpMuguga_01g00494	NC_007344.1	1021313	1023502	D	TpMuguga_01g00494	<1021313..>1023502	Theileria parva strain Muguga	3503448
TpMuguga_01g00495	mRNA	pckA	NC_007344.1	1023573	1026049	R	TpMuguga_01g00495	complement(join(1023573..1024714,1024822..1025175,1025271..1025391,1025562..1026049))	Theileria parva strain Muguga	3503449
TpMuguga_01g00496	mRNA	Dis3	NC_007344.1	1026306	1030178	D	TpMuguga_01g00496	join(1026306..1026515,1026577..1026912,1026988..1027890,1027987..1028296,1028410..1028559,1028648..1028747,1028827..1028898,1028930..1029087,1029265..1029373,1029434..1029610,1029695..1029811,1029942..>1030178)	Theileria parva strain Muguga	3503450
TpMuguga_01g00497	mRNA	FCA	NC_007344.1	1030326	1033162	R	TpMuguga_01g00497	complement(1030326..1033162)	Theileria parva strain Muguga	3503330
TpMuguga_01g00498	mRNA	ANGEL2	NC_007344.1	1033265	1035898	D	TpMuguga_01g00498	join(1033265..1035671,1035821..1035898)	Theileria parva strain Muguga	3503331
TpMuguga_01g02295	mRNA	TpMuguga_01g02295	NC_007344.1	1035951	1036325	R	TpMuguga_01g02295	complement(<1035951..>1036325)	Theileria parva strain Muguga	86047625
TpMuguga_01g00499	mRNA	TpMuguga_01g00499	NC_007344.1	1036376	1038848	R	TpMuguga_01g00499	complement(join(<1036376..1036527,1036638..1036715,1036776..1036876,1036910..1036956,1037063..1037187,1037264..1037374,1037415..1037506,1037584..1037696,1037772..1037827,1037918..1038061,1038092..1038382,1038569..>1038848))	Theileria parva strain Muguga	3503332
TpMuguga_01g00500	mRNA	TpMuguga_01g00500	NC_007344.1	1039956	1042820	D	TpMuguga_01g00500	join(<1039956..1040054,1040122..1040256,1040389..1042820)	Theileria parva strain Muguga	3503333
TpMuguga_01g00501	mRNA	TpMuguga_01g00501	NC_007344.1	1043416	1044080	D	TpMuguga_01g00501	join(<1043416..1043523,1043574..1043661,1043728..>1044080)	Theileria parva strain Muguga	3503334
TpMuguga_01g00502	mRNA	RPS13A	NC_007344.1	1044120	1044840	D	TpMuguga_01g00502	join(1044120..1044524,1044606..1044840)	Theileria parva strain Muguga	3503335
TpMuguga_01g00503	mRNA	anon-84Ea	NC_007344.1	1044879	1046448	R	TpMuguga_01g00503	complement(join(<1044879..1045174,1045230..1045342,1045406..1045483,1045516..1045588,1045626..1045760,1045791..>1046448))	Theileria parva strain Muguga	3503310
TpMuguga_01g00504	mRNA	FKBP62	NC_007344.1	1046559	1050330	D	TpMuguga_01g00504	join(1046559..1046804,1046883..1046940,1047014..1047320,1047410..1047678,1047713..1047814,1047878..1048012,1048096..1048962,1049107..1049180,1049370..1049496,1049615..1049719,1049807..1050330)	Theileria parva strain Muguga	3503311
TpMuguga_01g00505	mRNA	rps12	NC_007344.1	1050365	1051369	R	TpMuguga_01g00505	complement(1050365..1051369)	Theileria parva strain Muguga	3503312
TpMuguga_01g00506	mRNA	TpMuguga_01g00506	NC_007344.1	1051327	1052399	D	TpMuguga_01g00506	join(1051327..1051354,1051394..1051632,1051803..1052080,1052136..1052399)	Theileria parva strain Muguga	3503313
TpMuguga_01g00507	mRNA	MCM3	NC_007344.1	1052503	1056271	R	TpMuguga_01g00507	complement(join(1052503..1053726,1053869..1054142,1054299..1055177,1055302..1056271))	Theileria parva strain Muguga	3503314
TpMuguga_01g00508	mRNA	UBC36	NC_007344.1	1056174	1056958	D	TpMuguga_01g00508	join(1056174..1056361,1056540..1056958)	Theileria parva strain Muguga	3503315
TpMuguga_01g00509	mRNA	TpMuguga_01g00509	NC_007344.1	1057052	1059431	R	TpMuguga_01g00509	complement(join(1057052..1057467,1057513..1057603,1057689..1057924,1058010..1058384,1058452..1058537,1058607..1059108,1059202..1059431))	Theileria parva strain Muguga	3503172
TpMuguga_01g02850	mRNA	TpMuguga_01g02850	NC_007344.1	1059341	1059673	D	TpMuguga_01g02850	join(1059341..1059485,1059518..>1059673)	Theileria parva strain Muguga	86047664
TpMuguga_01g02755	mRNA	TpMuguga_01g02755	NC_007344.1	1059711	1060774	D	TpMuguga_01g02755	join(<1059711..1059752,1059814..1059888,1059929..1060075,1060105..1060327,1060384..1060531,1060564..1060667,1060698..1060774)	Theileria parva strain Muguga	3503173
TpMuguga_01g00511	mRNA	TpMuguga_01g00511	NC_007344.1	1061776	1068201	D	TpMuguga_01g00511	join(1061776..1066836,1066962..1067086,1067201..1068201)	Theileria parva strain Muguga	3503174
TpMuguga_01g00512	mRNA	TpMuguga_01g00512	NC_007344.1	1067741	1068422	R	TpMuguga_01g00512	complement(join(1067741..1067983,1068047..1068173,1068330..1068422))	Theileria parva strain Muguga	3503175
TpMuguga_01g00513	mRNA	TpMuguga_01g00513	NC_007344.1	1068424	1069284	R	TpMuguga_01g00513	complement(join(1068424..1068645,1068719..1068964,1069075..>1069284))	Theileria parva strain Muguga	3503176
TpMuguga_01g00514	mRNA	ANK2	NC_007344.1	1069608	1071609	R	TpMuguga_01g00514	complement(join(<1069608..1069787,1069853..1069975,1070035..1070343,1070437..1070787,1070851..1071609))	Theileria parva strain Muguga	3503177
TpMuguga_01g00515	mRNA	TpMuguga_01g00515	NC_007344.1	1071677	1074579	R	TpMuguga_01g00515	complement(join(1071677..1071775,1071808..1071892,1071924..1072120,1072156..1072313,1072349..1072414,1072499..1072900,1072949..1073189,1073221..1073287,1073336..1073427,1073476..1073536,1073569..1073717,1073764..1073883,1073932..1074025,1074058..1074579))	Theileria parva strain Muguga	3502966
TpMuguga_01g00516	mRNA	dxs	NC_007344.1	1074650	1077133	D	TpMuguga_01g00516	join(1074650..1076960,1076990..1077133)	Theileria parva strain Muguga	3502967
TpMuguga_01g00517	mRNA	TpMuguga_01g00517	NC_007344.1	1077155	1078083	R	TpMuguga_01g00517	complement(join(1077155..1077241,1077299..1077451,1077485..1077670,1077811..1078083))	Theileria parva strain Muguga	3502968
TpMuguga_01g00518	mRNA	WARS	NC_007344.1	1078124	1080644	D	TpMuguga_01g00518	join(1078124..1078390,1078476..1078568,1078599..1078708,1078773..1078896,1078927..1079162,1079230..1079384,1079453..1079859,1079983..1080190,1080313..1080515,1080545..1080644)	Theileria parva strain Muguga	3502969
TpMuguga_01g02640	mRNA	nudc	NC_007344.1	1080747	1082525	R	TpMuguga_01g02640	complement(join(<1080747..1080932,1081052..1081212,1081469..1081602,1081636..1082525))	Theileria parva strain Muguga	3502970
TpMuguga_01g02095	mRNA	TpMuguga_01g02095	NC_007344.1	1082665	1083407	R	TpMuguga_01g02095	complement(1082665..1083407)	Theileria parva strain Muguga	86047612
TpMuguga_01g00520	mRNA	ACSL5	NC_007344.1	1083486	1086774	D	TpMuguga_01g00520	join(1083486..1083774,1083931..1084015,1084077..1084420,1084514..1084846,1084936..1085310,1085384..1085478,1085510..1085661,1085850..1085939,1085969..1086056,1086088..1086177,1086309..1086437,1086546..1086686,1086718..1086774)	Theileria parva strain Muguga	3502921
TpMuguga_01g00521	mRNA	TpMuguga_01g00521	NC_007344.1	1086758	1087874	D	TpMuguga_01g00521	1086758..>1087874	Theileria parva strain Muguga	3502922
TpMuguga_01g00522	mRNA	TpMuguga_01g00522	NC_007344.1	1087945	1089044	R	TpMuguga_01g00522	complement(join(1087945..1088615,1088734..1088793,1088827..1089044))	Theileria parva strain Muguga	3502923
TpMuguga_01g00523	mRNA	TpMuguga_01g00523	NC_007344.1	1089111	1090644	D	TpMuguga_01g00523	join(1089111..1089706,1089843..1090009,1090114..1090644)	Theileria parva strain Muguga	3502924
TpMuguga_01g00524	mRNA	TpMuguga_01g00524	NC_007344.1	1090681	1091244	D	TpMuguga_01g00524	join(1090681..1090884,1090961..1091042,1091163..>1091244)	Theileria parva strain Muguga	3502925
TpMuguga_01g02250	mRNA	TpMuguga_01g02250	NC_007344.1	1091284	1091928	D	TpMuguga_01g02250	join(<1091284..1091437,1091501..>1091928)	Theileria parva strain Muguga	86047623
TpMuguga_01g00525	mRNA	TpMuguga_01g00525	NC_007344.1	1091874	1092993	R	TpMuguga_01g00525	complement(join(1091874..1092082,1092134..1092993))	Theileria parva strain Muguga	3502718
TpMuguga_01g00526	mRNA	TpMuguga_01g00526	NC_007344.1	1093077	1094159	D	TpMuguga_01g00526	join(1093077..1093674,1093822..1094159)	Theileria parva strain Muguga	3502719
TpMuguga_01g00527	mRNA	Sir2B	NC_007344.1	1094210	1097568	R	TpMuguga_01g00527	complement(join(1094210..1095676,1095772..1096349,1096586..1097305,1097406..>1097568))	Theileria parva strain Muguga	3502720
TpMuguga_01g00528	mRNA	TpMuguga_01g00528	NC_007344.1	1097731	1098756	R	TpMuguga_01g00528	complement(join(<1097731..1097887,1097991..1098279,1098325..1098423,1098535..1098756))	Theileria parva strain Muguga	3502721
TpMuguga_01g00529	mRNA	eef-2	NC_007344.1	1098947	1102150	R	TpMuguga_01g00529	complement(join(1098947..1099279,1099533..1101713,1102007..1102150))	Theileria parva strain Muguga	3502722
TpMuguga_01g00530	mRNA	TpMuguga_01g00530	NC_007344.1	1102196	1103713	D	TpMuguga_01g00530	join(1102196..1103085,1103149..>1103713)	Theileria parva strain Muguga	3502723
TpMuguga_01g00531	mRNA	TpMuguga_01g00531	NC_007344.1	1104181	1104947	D	TpMuguga_01g00531	1104181..1104947	Theileria parva strain Muguga	3502724
TpMuguga_01g00532	mRNA	TpMuguga_01g00532	NC_007344.1	1105016	1106728	R	TpMuguga_01g00532	complement(join(<1105016..1105476,1105506..1105601,1105910..1106728))	Theileria parva strain Muguga	3502580
TpMuguga_01g00533	mRNA	TpMuguga_01g00533	NC_007344.1	1106599	1109886	D	TpMuguga_01g00533	<1106599..>1109886	Theileria parva strain Muguga	3502581
TpMuguga_01g00534	mRNA	Faim2	NC_007344.1	1110689	1111883	R	TpMuguga_01g00534	complement(join(1110689..1110990,1111095..1111538,1111629..1111883))	Theileria parva strain Muguga	3502582
TpMuguga_01g00535	mRNA	TMBIM1	NC_007344.1	1112019	1113399	R	TpMuguga_01g00535	complement(join(1112019..1112635,1113064..1113164,1113230..1113399))	Theileria parva strain Muguga	3502583
TpMuguga_01g00536	mRNA	pus10	NC_007344.1	1113689	1115970	R	TpMuguga_01g00536	complement(join(<1113689..1113804,1113833..1114691,1115089..>1115970))	Theileria parva strain Muguga	3502584
TpMuguga_01g00537	mRNA	TpMuguga_01g00537	NC_007344.1	1116011	1116771	D	TpMuguga_01g00537	1116011..1116771	Theileria parva strain Muguga	3502585
TpMuguga_01g00538	mRNA	TpMuguga_01g00538	NC_007344.1	1117116	1120106	D	TpMuguga_01g00538	<1117116..>1120106	Theileria parva strain Muguga	3502586
TpMuguga_01g00539	mRNA	TpMuguga_01g00539	NC_007344.1	1121214	1127749	D	TpMuguga_01g00539	join(<1121214..1127629,1127701..>1127749)	Theileria parva strain Muguga	3502495
TpMuguga_01g00540	mRNA	TpMuguga_01g00540	NC_007344.1	1127880	1129529	D	TpMuguga_01g00540	<1127880..>1129529	Theileria parva strain Muguga	3502496
TpMuguga_01g00541	mRNA	TpMuguga_01g00541	NC_007344.1	1129986	1130615	R	TpMuguga_01g00541	complement(<1129986..>1130615)	Theileria parva strain Muguga	3502497
TpMuguga_01g00542	mRNA	TpMuguga_01g00542	NC_007344.1	1131364	1133371	R	TpMuguga_01g00542	complement(join(<1131364..1131439,1131648..1131757,1131863..>1133371))	Theileria parva strain Muguga	3502498
TpMuguga_01g00543	mRNA	spt4	NC_007344.1	1133663	1134533	D	TpMuguga_01g00543	join(<1133663..1133675,1133741..1133813,1133845..1133953,1134198..1134345,1134454..>1134533)	Theileria parva strain Muguga	3502499
TpMuguga_01g00544	mRNA	Dhx8	NC_007344.1	1134574	1140651	R	TpMuguga_01g00544	complement(join(1134574..1134717,1134763..1134908,1135127..1135368,1135650..1135880,1136001..1136130,1136365..1136599,1136633..1136692,1136956..1137162,1137445..1137667,1137863..1137928,1138245..1139008,1139268..1139715,1139929..1140041,1140182..1140329,1140565..>1140651))	Theileria parva strain Muguga	3502500
TpMuguga_01g00545	mRNA	TpMuguga_01g00545	NC_007344.1	1140807	1143024	D	TpMuguga_01g00545	join(1140807..1141285,1141635..1142724,1142946..1143024)	Theileria parva strain Muguga	3503436
TpMuguga_01g00546	mRNA	CHKB	NC_007344.1	1143429	1145079	D	TpMuguga_01g00546	join(<1143429..1144738,1144953..1145079)	Theileria parva strain Muguga	3503437
TpMuguga_01g01229	mRNA	TpMuguga_01g01229	NC_007344.1	1145664	1147325	R	TpMuguga_01g01229	complement(join(<1145664..1146451,1146509..>1147325))	Theileria parva strain Muguga	3503438
TpMuguga_01g02515	mRNA	TpMuguga_01g02515	NC_007344.1	1149194	1152512	D	TpMuguga_01g02515	join(1149194..1150349,1151170..>1152512)	Theileria parva strain Muguga	3503440
TpMuguga_01g00551	mRNA	TpMuguga_01g00551	NC_007344.1	1153210	1155345	D	TpMuguga_01g00551	<1153210..>1155345	Theileria parva strain Muguga	3503441
TpMuguga_01g00552	mRNA	TpMuguga_01g00552	NC_007344.1	1155554	1158399	R	TpMuguga_01g00552	complement(join(<1155554..1156284,1156478..1157534,1158370..>1158399))	Theileria parva strain Muguga	3503442
TpMuguga_01g00553	mRNA	TpMuguga_01g00553	NC_007344.1	1158521	1159898	R	TpMuguga_01g00553	complement(join(1158521..1159435,1159667..1159898))	Theileria parva strain Muguga	3503443
TpMuguga_01g00554	mRNA	TpMuguga_01g00554	NC_007344.1	1159969	1162029	D	TpMuguga_01g00554	join(1159969..1160208,1160412..1160586,1160878..>1162029)	Theileria parva strain Muguga	3503520
TpMuguga_01g00555	mRNA	TpMuguga_01g00555	NC_007344.1	1162363	1163210	D	TpMuguga_01g00555	join(1162363..1162491,1162773..1163210)	Theileria parva strain Muguga	3503521
TpMuguga_01g00556	mRNA	NEP1	NC_007344.1	1162727	1164630	R	TpMuguga_01g00556	complement(join(1162727..1163211,1163267..1163667,1163939..1164100,1164332..1164394,1164425..1164630))	Theileria parva strain Muguga	3503522
TpMuguga_01g00557	mRNA	TpMuguga_01g00557	NC_007344.1	1164498	1167718	D	TpMuguga_01g00557	join(1164498..1164803,1165009..1165050,1165240..1165530,1165597..1167010,1167290..1167718)	Theileria parva strain Muguga	3503523
TpMuguga_01g00558	mRNA	EPN2	NC_007344.1	1168779	1170197	R	TpMuguga_01g00558	complement(<1168779..>1170197)	Theileria parva strain Muguga	3503524
TpMuguga_01g00559	mRNA	TpMuguga_01g00559	NC_007344.1	1170915	1172161	R	TpMuguga_01g00559	complement(join(1170915..1171554,1171865..1171929,1172031..1172161))	Theileria parva strain Muguga	3503525
TpMuguga_01g00560	mRNA	RPL3	NC_007344.1	1172220	1174122	D	TpMuguga_01g00560	join(1172220..1172890,1173510..1174122)	Theileria parva strain Muguga	3503558
TpMuguga_01g00561	mRNA	TpMuguga_01g00561	NC_007344.1	1174842	1177301	D	TpMuguga_01g00561	<1174842..>1177301	Theileria parva strain Muguga	3503559
TpMuguga_01g00562	mRNA	TpMuguga_01g00562	NC_007344.1	1177962	1178972	R	TpMuguga_01g00562	complement(join(<1177962..1177994,1178688..>1178972))	Theileria parva strain Muguga	3503560
TpMuguga_01g00563	mRNA	TpMuguga_01g00563	NC_007344.1	1179058	1180690	D	TpMuguga_01g00563	join(<1179058..1179541,1179886..1180690)	Theileria parva strain Muguga	3503561
TpMuguga_01g00564	mRNA	TpMuguga_01g00564	NC_007344.1	1180661	1181434	D	TpMuguga_01g00564	1180661..1181434	Theileria parva strain Muguga	3503562
TpMuguga_01g00565	mRNA	TpMuguga_01g00565	NC_007344.1	1181654	1183884	R	TpMuguga_01g00565	complement(join(<1181654..1181734,1181840..1181971,1182198..1182290,1182497..1182803,1183050..1183121,1183151..1183233,1183395..1183465,1183620..1183701,1183791..1183884))	Theileria parva strain Muguga	3503563
TpMuguga_01g00566	mRNA	TpMuguga_01g00566	NC_007344.1	1183993	1186484	R	TpMuguga_01g00566	complement(join(<1183993..1184249,1184747..1185091,1185268..1185492,1186283..>1186484))	Theileria parva strain Muguga	3503564
TpMuguga_01g00567	mRNA	TpMuguga_01g00567	NC_007344.1	1186624	1187841	D	TpMuguga_01g00567	join(1186624..1186754,1186835..1186903,1186969..1187119,1187168..1187216,1187459..1187841)	Theileria parva strain Muguga	3503592
TpMuguga_01g00568	mRNA	trm9	NC_007344.1	1187406	1189132	R	TpMuguga_01g00568	complement(join(1187406..1188098,1188155..1188220,1188333..1188620,1188990..>1189132))	Theileria parva strain Muguga	3503593
TpMuguga_01g00569	mRNA	Zdhhc15	NC_007344.1	1189183	1191052	R	TpMuguga_01g00569	complement(join(<1189183..1189269,1189340..1189442,1189472..1189504,1189701..1189891,1190062..1190107,1190135..1190195,1190408..1190464,1190536..1190607,1190640..1190730,1190868..1190912,1190944..1191052))	Theileria parva strain Muguga	3503594
TpMuguga_01g00570	mRNA	ZCCHC9	NC_007344.1	1191229	1192045	R	TpMuguga_01g00570	complement(join(1191229..1191425,1191484..1191596,1191625..1192045))	Theileria parva strain Muguga	3503595
TpMuguga_01g02555	mRNA	TpMuguga_01g02555	NC_007344.1	1192119	1195894	R	TpMuguga_01g02555	complement(join(1192119..1193528,1194260..1195894))	Theileria parva strain Muguga	3503597
TpMuguga_01g02580	mRNA	TpMuguga_01g02580	NC_007344.1	1195944	1196687	R	TpMuguga_01g02580	complement(join(1195944..1196152,1196231..1196687))	Theileria parva strain Muguga	86047644
TpMuguga_01g00573	mRNA	TpMuguga_01g00573	NC_007344.1	1196681	1197513	D	TpMuguga_01g00573	join(1196681..1197030,1197339..1197513)	Theileria parva strain Muguga	3503609
TpMuguga_01g00574	mRNA	TpMuguga_01g00574	NC_007344.1	1197274	1198023	R	TpMuguga_01g00574	complement(join(1197274..1197494,1197524..1197629,1197764..1198023))	Theileria parva strain Muguga	3503610
TpMuguga_01g02315	mRNA	TpMuguga_01g02315	NC_007344.1	1198195	1198478	R	TpMuguga_01g02315	complement(1198195..1198478)	Theileria parva strain Muguga	86047627
TpMuguga_01g00575	mRNA	TpMuguga_01g00575	NC_007344.1	1198532	1203813	R	TpMuguga_01g00575	complement(join(<1198532..1203624,1203735..>1203813))	Theileria parva strain Muguga	3503611
TpMuguga_01g02270	mRNA	TpMuguga_01g02270	NC_007344.1	1204446	1208408	R	TpMuguga_01g02270	complement(join(<1204446..1204563,1204715..1208408))	Theileria parva strain Muguga	3503612
TpMuguga_01g02010	mRNA	TpMuguga_01g02010	NC_007344.1	1209031	1209642	D	TpMuguga_01g02010	join(1209031..1209246,1209277..1209342,1209479..1209642)	Theileria parva strain Muguga	86047606
TpMuguga_01g02820	mRNA	TpMuguga_01g02820	NC_007344.1	1209685	1211990	R	TpMuguga_01g02820	complement(join(<1209685..1210155,1210278..>1211990))	Theileria parva strain Muguga	86047660
TpMuguga_01g02360	mRNA	TpMuguga_01g02360	NC_007344.1	1212015	1213227	R	TpMuguga_01g02360	complement(join(<1212015..1212730,1212810..1212922,1212955..1213037,1213071..1213227))	Theileria parva strain Muguga	3503613
TpMuguga_01g01230	mRNA	TpMuguga_01g01230	NC_007344.1	1213124	1215178	D	TpMuguga_01g01230	join(1213124..1213527,1213559..1213684,1213714..1213788,1213849..1214002,1214033..1214113,1214197..1214357,1214389..1214517,1214564..1214791,1214881..1214976,1215033..1215178)	Theileria parva strain Muguga	3503614
TpMuguga_01g01231	mRNA	PAE2	NC_007344.1	1215157	1216477	D	TpMuguga_01g01231	join(1215157..1215258,1215294..1215652,1215742..1215951,1216243..1216477)	Theileria parva strain Muguga	3502629
TpMuguga_01g00578	mRNA	TpMuguga_01g00578	NC_007344.1	1216655	1218874	D	TpMuguga_01g00578	join(<1216655..1217833,1217943..1218376,1218481..>1218874)	Theileria parva strain Muguga	3502630
TpMuguga_01g00579	mRNA	TpMuguga_01g00579	NC_007344.1	1218944	1221099	R	TpMuguga_01g00579	complement(<1218944..1221099)	Theileria parva strain Muguga	3502631
TpMuguga_01g00580	mRNA	TpMuguga_01g00580	NC_007344.1	1221434	1222939	D	TpMuguga_01g00580	join(<1221434..1222797,1222822..>1222939)	Theileria parva strain Muguga	3502632
TpMuguga_01g02210	mRNA	TpMuguga_01g02210	NC_007344.1	1222979	1223619	R	TpMuguga_01g02210	complement(join(1222979..1223214,1223251..1223619))	Theileria parva strain Muguga	86047619
TpMuguga_01g00581	mRNA	sun2	NC_007344.1	1223610	1226435	D	TpMuguga_01g00581	join(1223610..1224069,1224101..1225733,1225796..1226435)	Theileria parva strain Muguga	3502633
TpMuguga_01g00582	mRNA	Ascc3	NC_007344.1	1226696	1233687	R	TpMuguga_01g00582	complement(join(1226696..1226820,1226850..1227009,1227104..1227269,1227300..1227847,1227978..1228251,1228290..1228355,1228432..1228556,1228807..1229199,1229232..1231382,1231466..1231743,1231860..1232018,1232110..1232657,1232783..1233381,1233413..1233687))	Theileria parva strain Muguga	3502634
TpMuguga_01g00584	mRNA	NFYC3	NC_007344.1	1234480	1235415	D	TpMuguga_01g00584	join(<1234480..1234546,1234588..1234670,1234702..1234815,1234847..1234957,1235041..>1235415)	Theileria parva strain Muguga	3502655
TpMuguga_01g00585	mRNA	TpMuguga_01g00585	NC_007344.1	1235535	1236211	R	TpMuguga_01g00585	complement(join(<1235535..1235558,1235617..1235741,1235773..1235843,1235873..1235959,1235994..>1236211))	Theileria parva strain Muguga	3502656
TpMuguga_01g00586	mRNA	Camkk1	NC_007344.1	1236675	1238524	D	TpMuguga_01g00586	1236675..1238524	Theileria parva strain Muguga	3502657
TpMuguga_01g00587	mRNA	TpMuguga_01g00587	NC_007344.1	1238678	1240791	R	TpMuguga_01g00587	complement(join(<1238678..1239969,1240044..1240169,1240200..1240329,1240360..>1240791))	Theileria parva strain Muguga	3502658
TpMuguga_01g00588	mRNA	TpMuguga_01g00588	NC_007344.1	1241380	1241807	D	TpMuguga_01g00588	join(<1241380..1241472,1241509..1241612,1241647..1241720,1241752..>1241807)	Theileria parva strain Muguga	3502659
TpMuguga_01g00589	mRNA	TpMuguga_01g00589	NC_007344.1	1241827	1242317	D	TpMuguga_01g00589	join(<1241827..1241867,1241897..1241947,1241978..1242100,1242131..>1242317)	Theileria parva strain Muguga	3502524
TpMuguga_01g00590	mRNA	TpMuguga_01g00590	NC_007344.1	1246098	1247507	R	TpMuguga_01g00590	complement(<1246098..>1247507)	Theileria parva strain Muguga	3502525
TpMuguga_01g00591	mRNA	U2af2	NC_007344.1	1247984	1249279	R	TpMuguga_01g00591	complement(<1247984..>1249279)	Theileria parva strain Muguga	3502526
TpMuguga_01g02835	mRNA	EIF2B3	NC_007344.1	1249560	1251512	R	TpMuguga_01g02835	complement(join(1249560..1249669,1249702..1249835,1249869..1249938,1249968..1250209,1250245..1250296,1250326..1250927,1251027..1251512))	Theileria parva strain Muguga	3502528
TpMuguga_01g00594	mRNA	TpMuguga_01g00594	NC_007344.1	1252125	1255605	D	TpMuguga_01g00594	join(<1252125..1252253,1252338..1252557,1252648..1254041,1254113..1254893,1255093..1255242,1255278..1255376,1255457..>1255605)	Theileria parva strain Muguga	3502529
TpMuguga_01g00595	mRNA	TPS5	NC_007344.1	1255935	1259989	D	TpMuguga_01g00595	join(1255935..1256572,1256689..1258085,1258224..1258829,1258989..1259407,1259505..1259989)	Theileria parva strain Muguga	3502827
TpMuguga_01g00596	mRNA	TpMuguga_01g00596	NC_007344.1	1260054	1261233	D	TpMuguga_01g00596	join(1260054..1260450,1260490..1260552,1260652..1260759,1260791..1260841,1260872..1260928,1260989..1261048,1261078..1261233)	Theileria parva strain Muguga	3502828
TpMuguga_01g00597	mRNA	TpMuguga_01g00597	NC_007344.1	1260967	1261921	R	TpMuguga_01g00597	complement(join(1260967..1261278,1261310..1261425,1261457..1261921))	Theileria parva strain Muguga	3502829
TpMuguga_01g00598	mRNA	TpMuguga_01g00598	NC_007344.1	1262202	1264829	D	TpMuguga_01g00598	join(1262202..1262631,1262721..1262784,1262816..1262914,1262993..1263094,1263125..1263650,1263762..1264582,1264730..1264829)	Theileria parva strain Muguga	3502830
TpMuguga_01g02510	mRNA	COG4	NC_007344.1	1264895	1267938	D	TpMuguga_01g02510	join(1264895..1266472,1266611..1266698,1266733..1266843,1266930..1267042,1267111..1267188,1267219..1267335,1267403..1267531,1267751..1267820,1267849..1267938)	Theileria parva strain Muguga	3503131
TpMuguga_01g00601	mRNA	ECR1	NC_007344.1	1267931	1269728	R	TpMuguga_01g00601	complement(join(1267931..1268034,1268065..1268135,1268182..1268307,1268357..1268506,1268538..1268710,1268743..1268797,1268855..1269137,1269201..1269281,1269314..1269419,1269538..1269728))	Theileria parva strain Muguga	3503132
TpMuguga_01g00602	mRNA	TpMuguga_01g00602	NC_007344.1	1270087	1273488	D	TpMuguga_01g00602	join(<1270087..1273223,1273327..1273488)	Theileria parva strain Muguga	3503133
TpMuguga_01g00603	mRNA	TpMuguga_01g00603	NC_007344.1	1273607	1274623	D	TpMuguga_01g00603	<1273607..>1274623	Theileria parva strain Muguga	3503134
TpMuguga_01g00604	mRNA	TpMuguga_01g00604	NC_007344.1	1275081	1276478	D	TpMuguga_01g00604	<1275081..>1276478	Theileria parva strain Muguga	3503135
TpMuguga_01g00605	mRNA	TpMuguga_01g00605	NC_007344.1	1276868	1277744	D	TpMuguga_01g00605	1276868..>1277744	Theileria parva strain Muguga	3503136
TpMuguga_01g00606	mRNA	TpMuguga_01g00606	NC_007344.1	1278261	1279394	D	TpMuguga_01g00606	join(<1278261..1279080,1279162..>1279394)	Theileria parva strain Muguga	3503137
TpMuguga_01g00607	mRNA	TpMuguga_01g00607	NC_007344.1	1279781	1280751	D	TpMuguga_01g00607	1279781..>1280751	Theileria parva strain Muguga	3503578
TpMuguga_01g00608	mRNA	TpMuguga_01g00608	NC_007344.1	1281157	1282476	D	TpMuguga_01g00608	<1281157..1282476	Theileria parva strain Muguga	3503579
TpMuguga_01g00609	mRNA	TpMuguga_01g00609	NC_007344.1	1282780	1283776	D	TpMuguga_01g00609	<1282780..1283776	Theileria parva strain Muguga	3503580
TpMuguga_01g00610	mRNA	TpMuguga_01g00610	NC_007344.1	1284056	1285086	D	TpMuguga_01g00610	<1284056..1285086	Theileria parva strain Muguga	3503581
TpMuguga_01g00611	mRNA	TpMuguga_01g00611	NC_007344.1	1285372	1286358	D	TpMuguga_01g00611	<1285372..>1286358	Theileria parva strain Muguga	3503582
TpMuguga_01g00612	mRNA	TpMuguga_01g00612	NC_007344.1	1286729	1287738	D	TpMuguga_01g00612	1286729..>1287738	Theileria parva strain Muguga	3503583
TpMuguga_01g00613	mRNA	TpMuguga_01g00613	NC_007344.1	1288166	1289464	D	TpMuguga_01g00613	<1288166..>1289464	Theileria parva strain Muguga	3503584
TpMuguga_01g00614	mRNA	TpMuguga_01g00614	NC_007344.1	1289915	1290864	D	TpMuguga_01g00614	1289915..>1290864	Theileria parva strain Muguga	3503585
TpMuguga_01g00615	mRNA	TpMuguga_01g00615	NC_007344.1	1291352	1292990	D	TpMuguga_01g00615	<1291352..1292990	Theileria parva strain Muguga	3503536
TpMuguga_01g00616	mRNA	TpMuguga_01g00616	NC_007344.1	1293165	1294112	D	TpMuguga_01g00616	<1293165..>1294112	Theileria parva strain Muguga	3503537
TpMuguga_01g00617	mRNA	TpMuguga_01g00617	NC_007344.1	1294567	1296142	D	TpMuguga_01g00617	<1294567..1296142	Theileria parva strain Muguga	3503538
TpMuguga_01g00618	mRNA	TpMuguga_01g00618	NC_007344.1	1296278	1297396	D	TpMuguga_01g00618	<1296278..>1297396	Theileria parva strain Muguga	3503539
TpMuguga_01g00619	mRNA	TpMuguga_01g00619	NC_007344.1	1297886	1298953	D	TpMuguga_01g00619	<1297886..1298953	Theileria parva strain Muguga	3503540
TpMuguga_01g00620	mRNA	TpMuguga_01g00620	NC_007344.1	1299094	1302688	D	TpMuguga_01g00620	<1299094..1302688	Theileria parva strain Muguga	3503541
TpMuguga_01g00621	mRNA	TpMuguga_01g00621	NC_007344.1	1302747	1304739	D	TpMuguga_01g00621	<1302747..1304739	Theileria parva strain Muguga	3503542
TpMuguga_01g00622	mRNA	ATG18A	NC_007344.1	1305003	1307013	R	TpMuguga_01g00622	complement(join(<1305003..1305150,1305222..1305888,1306080..1306222,1306405..1306648,1306902..>1307013))	Theileria parva strain Muguga	3503543
TpMuguga_01g00623	mRNA	TpMuguga_01g00623	NC_007344.1	1307241	1307558	R	TpMuguga_01g00623	complement(<1307241..>1307558)	Theileria parva strain Muguga	3503457
TpMuguga_01g00624	mRNA	TpMuguga_01g00624	NC_007344.1	1307747	1308924	D	TpMuguga_01g00624	join(<1307747..1308027,1308192..1308344,1308468..1308549,1308670..>1308924)	Theileria parva strain Muguga	3503458
TpMuguga_01g00625	mRNA	TpMuguga_01g00625	NC_007344.1	1309086	1309830	D	TpMuguga_01g00625	join(1309086..1309282,1309315..1309396,1309527..1309546,1309581..1309613,1309744..>1309830)	Theileria parva strain Muguga	3503459
TpMuguga_01g00626	mRNA	TpMuguga_01g00626	NC_007344.1	1309967	1311282	D	TpMuguga_01g00626	join(<1309967..1310394,1310426..1310522,1310737..1310793,1310825..1310965,1311013..1311282)	Theileria parva strain Muguga	3503460
TpMuguga_01g02825	mRNA	TpMuguga_01g02825	NC_007344.1	1311008	1316147	R	TpMuguga_01g02825	complement(join(1311008..1311323,1311567..1311688,1311934..1312064,1312259..1316147))	Theileria parva strain Muguga	3503461
TpMuguga_01g00630	mRNA	TBP	NC_007344.1	1316387	1317444	R	TpMuguga_01g00630	complement(join(<1316387..1316541,1316649..1316852,1316965..1317156,1317327..>1317444))	Theileria parva strain Muguga	3503403
TpMuguga_01g00631	mRNA	TpMuguga_01g00631	NC_007344.1	1317738	1319474	D	TpMuguga_01g00631	<1317738..>1319474	Theileria parva strain Muguga	3503404
TpMuguga_01g02730	mRNA	TpMuguga_01g02730	NC_007344.1	1319577	1319882	R	TpMuguga_01g02730	complement(<1319577..>1319882)	Theileria parva strain Muguga	86047653
TpMuguga_01g00632	mRNA	ZNF207	NC_007344.1	1319999	1321257	D	TpMuguga_01g00632	join(<1319999..1320172,1320344..1321030,1321204..>1321257)	Theileria parva strain Muguga	3503405
TpMuguga_01g02380	mRNA	TpMuguga_01g02380	NC_007344.1	1321460	1322098	R	TpMuguga_01g02380	complement(<1321460..>1322098)	Theileria parva strain Muguga	86047631
TpMuguga_01g00633	mRNA	ADK1	NC_007344.1	1322359	1323514	R	TpMuguga_01g00633	complement(join(<1322359..1322397,1322431..1322763,1322890..1323030,1323157..1323261,1323395..>1323514))	Theileria parva strain Muguga	3503406
TpMuguga_01g00634	mRNA	Dph5	NC_007344.1	1323896	1325221	D	TpMuguga_01g00634	join(<1323896..1324033,1324181..1324305,1324460..1324568,1324604..1324791,1324914..1324978,1325040..>1325221)	Theileria parva strain Muguga	3503407
TpMuguga_01g00635	mRNA	Trmt11	NC_007344.1	1325260	1327331	R	TpMuguga_01g00635	complement(join(<1325260..1325297,1325329..1325405,1325476..1325638,1325764..1325818,1325850..1325929,1325960..1326045,1326169..1326248,1326348..1326551,1326629..1326862,1327008..>1327331))	Theileria parva strain Muguga	3503408
TpMuguga_01g02540	mRNA	TpMuguga_01g02540	NC_007344.1	1327514	1328057	D	TpMuguga_01g02540	join(<1327514..1327808,1328005..>1328057)	Theileria parva strain Muguga	86047641
TpMuguga_01g02220	mRNA	TpMuguga_01g02220	NC_007344.1	1328182	1328743	D	TpMuguga_01g02220	join(<1328182..1328241,1328309..1328390,1328472..1328568,1328638..>1328743)	Theileria parva strain Muguga	3503361
TpMuguga_01g02225	mRNA	TpMuguga_01g02225	NC_007344.1	1328755	1329719	D	TpMuguga_01g02225	join(<1328755..1328857,1328898..1328962,1329113..1329182,1329217..1329354,1329425..1329585,1329636..1329719)	Theileria parva strain Muguga	3503362
TpMuguga_01g00639	mRNA	RAB5B	NC_007344.1	1329787	1330994	D	TpMuguga_01g00639	join(<1329787..1330000,1330164..1330233,1330335..1330373,1330405..1330517,1330549..1330598,1330717..1330810,1330894..>1330994)	Theileria parva strain Muguga	3503364
TpMuguga_01g00640	mRNA	TpMuguga_01g00640	NC_007344.1	1331847	1337375	R	TpMuguga_01g00640	complement(<1331847..>1337375)	Theileria parva strain Muguga	3503365
TpMuguga_01g00641	mRNA	dhx16	NC_007344.1	1338890	1342124	R	TpMuguga_01g00641	complement(join(<1338890..1339776,1339845..1340042,1340132..1340349,1340410..1340592,1340686..>1342124))	Theileria parva strain Muguga	3503354
TpMuguga_01g00642	mRNA	Txnl4a	NC_007344.1	1342423	1343160	D	TpMuguga_01g00642	join(<1342423..1342464,1342497..1342532,1342618..1342719,1342787..1342863,1342925..1343043,1343108..>1343160)	Theileria parva strain Muguga	3503355
TpMuguga_01g00643	mRNA	TpMuguga_01g00643	NC_007344.1	1343368	1344090	D	TpMuguga_01g00643	<1343368..>1344090	Theileria parva strain Muguga	3503356
TpMuguga_01g02450	mRNA	TpMuguga_01g02450	NC_007344.1	1344180	1346758	R	TpMuguga_01g02450	complement(join(1344180..1344682,1344801..1344883,1344914..1345016,1345052..1345227,1345321..1345462,1345498..1345555,1345591..1345741,1345814..1345876,1345911..1345985,1346016..1346186,1346227..1346346,1346390..1346758))	Theileria parva strain Muguga	3503358
TpMuguga_01g00646	mRNA	abcC6	NC_007344.1	1346829	1347977	D	TpMuguga_01g00646	1346829..>1347977	Theileria parva strain Muguga	3503359
TpMuguga_01g00647	mRNA	TpMuguga_01g00647	NC_007344.1	1348213	1353903	R	TpMuguga_01g00647	complement(<1348213..>1353903)	Theileria parva strain Muguga	3503360
TpMuguga_01g00648	mRNA	TpMuguga_01g00648	NC_007344.1	1354564	1357301	R	TpMuguga_01g00648	complement(join(1354564..1354745,1354866..1356307,1356397..1357301))	Theileria parva strain Muguga	3503216
TpMuguga_01g00649	mRNA	TpMuguga_01g00649	NC_007344.1	1357404	1359354	D	TpMuguga_01g00649	join(1357404..1358089,1358174..1358542,1358615..1358822,1358910..>1359354)	Theileria parva strain Muguga	3503217
TpMuguga_01g00650	mRNA	AMA1	NC_007344.1	1359898	1362396	D	TpMuguga_01g00650	1359898..1362396	Theileria parva strain Muguga	3503218
TpMuguga_01g02350	mRNA	TpMuguga_01g02350	NC_007344.1	1362484	1363493	D	TpMuguga_01g02350	join(1362484..1362629,1362702..1362941,1362975..1363103,1363142..1363265,1363314..>1363493)	Theileria parva strain Muguga	3503219
TpMuguga_01g02650	mRNA	TpMuguga_01g02650	NC_007344.1	1363541	1364110	D	TpMuguga_01g02650	join(<1363541..1363863,1363969..1364110)	Theileria parva strain Muguga	86047649
TpMuguga_01g00652	mRNA	POLR3F	NC_007344.1	1364154	1365385	D	TpMuguga_01g00652	join(<1364154..1364364,1364458..1364600,1364685..1364963,1365049..1365147,1365230..>1365385)	Theileria parva strain Muguga	3503220
TpMuguga_01g02760	mRNA	TpMuguga_01g02760	NC_007344.1	1365426	1366051	D	TpMuguga_01g02760	<1365426..1366051	Theileria parva strain Muguga	86047655
TpMuguga_01g00653	mRNA	rps25	NC_007344.1	1366133	1366703	D	TpMuguga_01g00653	join(1366133..1366169,1366310..1366384,1366445..1366703)	Theileria parva strain Muguga	3503221
TpMuguga_01g00654	mRNA	TpMuguga_01g00654	NC_007344.1	1366819	1368011	R	TpMuguga_01g00654	complement(join(1366819..1367278,1367372..>1368011))	Theileria parva strain Muguga	3503065
TpMuguga_01g00655	mRNA	syvn1	NC_007344.1	1368113	1370584	D	TpMuguga_01g00655	join(1368113..1368296,1368368..1368460,1368544..1368714,1368745..1368894,1368972..1369050,1369115..1369188,1369221..1369292,1369353..1369426,1369480..1369652,1369752..>1370584)	Theileria parva strain Muguga	3503066
TpMuguga_01g00656	mRNA	TpMuguga_01g00656	NC_007344.1	1370769	1373606	D	TpMuguga_01g00656	<1370769..>1373606	Theileria parva strain Muguga	3503067
TpMuguga_01g00657	mRNA	Bdh1	NC_007344.1	1373681	1375031	D	TpMuguga_01g00657	join(<1373681..1374181,1374274..1374664,1374770..1375031)	Theileria parva strain Muguga	3503068
TpMuguga_01g02535	mRNA	TpMuguga_01g02535	NC_007344.1	1375107	1375726	R	TpMuguga_01g02535	complement(join(1375107..1375211,1375244..1375311,1375458..1375726))	Theileria parva strain Muguga	86047640
TpMuguga_01g00658	mRNA	TpMuguga_01g00658	NC_007344.1	1375770	1379700	D	TpMuguga_01g00658	join(1375770..1376478,1376568..1379700)	Theileria parva strain Muguga	3503069
TpMuguga_01g00659	mRNA	TpMuguga_01g00659	NC_007344.1	1379859	1381224	R	TpMuguga_01g00659	complement(1379859..1381224)	Theileria parva strain Muguga	3503070
TpMuguga_01g00660	mRNA	AP2M1	NC_007344.1	1381388	1383551	D	TpMuguga_01g00660	join(1381388..1382618,1382681..1383551)	Theileria parva strain Muguga	3503071
TpMuguga_01g00661	mRNA	Tgs1	NC_007344.1	1383534	1385922	D	TpMuguga_01g00661	join(1383534..1383812,1383881..1384633,1384668..1385221,1385310..1385628,1385786..1385922)	Theileria parva strain Muguga	3502983
TpMuguga_01g00662	mRNA	TpMuguga_01g00662	NC_007344.1	1385848	1389870	R	TpMuguga_01g00662	complement(1385848..1389870)	Theileria parva strain Muguga	3502984
TpMuguga_01g00663	mRNA	TpMuguga_01g00663	NC_007344.1	1389953	1391516	D	TpMuguga_01g00663	join(1389953..1390561,1390595..1390676,1390715..1390923,1390994..1391181,1391243..1391349,1391459..>1391516)	Theileria parva strain Muguga	3502985
TpMuguga_01g00664	mRNA	PDE8A	NC_007344.1	1391653	1393760	D	TpMuguga_01g00664	join(1391653..1392489,1392594..1392708,1392738..1392970,1393103..1393369,1393539..1393760)	Theileria parva strain Muguga	3502986
TpMuguga_01g00665	mRNA	dnaJ	NC_007344.1	1394394	1395649	R	TpMuguga_01g00665	complement(join(1394394..1394577,1394610..1394789,1394879..1394958,1395025..1395115,1395146..1395247,1395355..1395649))	Theileria parva strain Muguga	3502987
TpMuguga_01g00666	mRNA	MCM8	NC_007344.1	1395691	1399690	D	TpMuguga_01g00666	join(1395691..1396067,1396098..1396174,1396211..1397439,1397497..1397560,1397608..1397902,1397944..1398099,1398202..1398359,1398389..1398516,1398562..1398639,1398669..1398741,1398799..1399023,1399054..1399269,1399301..1399376,1399539..1399690)	Theileria parva strain Muguga	3502988
TpMuguga_01g00667	mRNA	TpMuguga_01g00667	NC_007344.1	1400261	1401678	D	TpMuguga_01g00667	join(<1400261..1401217,1401344..1401496,1401526..>1401678)	Theileria parva strain Muguga	3502898
TpMuguga_01g00668	mRNA	TpMuguga_01g00668	NC_007344.1	1401787	1402315	D	TpMuguga_01g00668	join(<1401787..1401844,1401878..1401912,1401942..1402007,1402097..1402184,1402215..1402315)	Theileria parva strain Muguga	86047602
TpMuguga_01g00669	mRNA	TpMuguga_01g00669	NC_007344.1	1402447	1404047	D	TpMuguga_01g00669	join(1402447..1402950,1403064..>1404047)	Theileria parva strain Muguga	3502900
TpMuguga_01g00670	mRNA	TpMuguga_01g00670	NC_007344.1	1404074	1405582	R	TpMuguga_01g00670	complement(1404074..>1405582)	Theileria parva strain Muguga	3502901
TpMuguga_01g00671	mRNA	TpMuguga_01g00671	NC_007344.1	1406069	1407632	R	TpMuguga_01g00671	complement(join(<1406069..1406527,1406561..1406620,1406650..1406688,1406718..1406802,1406832..1406917,1406966..1407099,1407128..>1407632))	Theileria parva strain Muguga	3502902
TpMuguga_01g00672	mRNA	rtf2	NC_007344.1	1407827	1408614	R	TpMuguga_01g00672	complement(join(<1407827..1408135,1408191..1408337,1408432..>1408614))	Theileria parva strain Muguga	3502850
TpMuguga_01g00673	mRNA	nop10	NC_007344.1	1408755	1409036	D	TpMuguga_01g00673	join(1408755..1408852,1408914..>1409036)	Theileria parva strain Muguga	3502851
TpMuguga_01g02495	mRNA	TpMuguga_01g02495	NC_007344.1	1409840	1411726	D	TpMuguga_01g02495	join(<1409840..1410607,1410637..1410697,1411204..1411314,1411387..1411439,1411622..>1411726)	Theileria parva strain Muguga	86047637
TpMuguga_01g02050	mRNA	TpMuguga_01g02050	NC_007344.1	1411798	1413668	D	TpMuguga_01g02050	join(<1411798..1411888,1411920..1412053,1412154..1412342,1412596..1412989,1413082..>1413668)	Theileria parva strain Muguga	3502852
TpMuguga_01g00675	mRNA	RPL14	NC_007344.1	1413839	1414670	R	TpMuguga_01g00675	complement(join(1413839..1414109,1414382..1414446,1414478..1414551,1414607..1414670))	Theileria parva strain Muguga	3502853
TpMuguga_01g00676	mRNA	TpMuguga_01g00676	NC_007344.1	1414936	1416490	D	TpMuguga_01g00676	join(1414936..1415322,1415527..1415688,1415720..1415800,1415910..1416044,1416123..1416193,1416322..>1416490)	Theileria parva strain Muguga	3502854
TpMuguga_01g00677	mRNA	SUCLA2	NC_007344.1	1416732	1418093	R	TpMuguga_01g00677	complement(<1416732..>1418093)	Theileria parva strain Muguga	3502855
TpMuguga_01g00678	mRNA	erkB	NC_007344.1	1418772	1422106	R	TpMuguga_01g00678	complement(join(1418772..1420279,1420738..1422106))	Theileria parva strain Muguga	3502838
TpMuguga_01g00679	mRNA	TpMuguga_01g00679	NC_007344.1	1422742	1425189	D	TpMuguga_01g00679	join(<1422742..1422817,1423116..1423475,1423994..>1425189)	Theileria parva strain Muguga	3502839
TpMuguga_01g00680	mRNA	TpMuguga_01g00680	NC_007344.1	1425601	1426287	D	TpMuguga_01g00680	<1425601..>1426287	Theileria parva strain Muguga	3502840
TpMuguga_01g00681	mRNA	lsg1	NC_007344.1	1426348	1430391	R	TpMuguga_01g00681	complement(join(1426348..1426442,1426595..1427159,1427996..1428071,1428126..1428480,1428527..1428604,1429150..1430391))	Theileria parva strain Muguga	3502841
TpMuguga_01g02130	mRNA	TpMuguga_01g02130	NC_007344.1	1430468	1432079	D	TpMuguga_01g02130	join(<1430468..1430568,1430727..1430833,1431003..1431186,1431544..1431646,1431792..1431863,1431897..>1432079)	Theileria parva strain Muguga	3502842
TpMuguga_01g02165	mRNA	COX2	NC_007344.1	1432245	1432730	D	TpMuguga_01g02165	<1432245..>1432730	Theileria parva strain Muguga	3502843
TpMuguga_01g00684	mRNA	TpMuguga_01g00684	NC_007344.1	1433330	1435120	R	TpMuguga_01g00684	complement(<1433330..>1435120)	Theileria parva strain Muguga	3502755
TpMuguga_01g00685	mRNA	TpMuguga_01g00685	NC_007344.1	1435984	1438122	D	TpMuguga_01g00685	<1435984..>1438122	Theileria parva strain Muguga	3502756
TpMuguga_01g02150	mRNA	TpMuguga_01g02150	NC_007344.1	1438728	1439649	R	TpMuguga_01g02150	complement(join(<1438728..1438775,1438827..1438912,1438942..1438954,1438985..1439020,1439062..1439147,1439182..1439276,1439375..1439510,1439543..1439559,1439591..>1439649))	Theileria parva strain Muguga	86047614
TpMuguga_01g02160	mRNA	dph2	NC_007344.1	1439691	1441415	D	TpMuguga_01g02160	join(1439691..1440013,1440272..1440381,1440411..>1441415)	Theileria parva strain Muguga	86047615
TpMuguga_01g02420	mRNA	mrpl10	NC_007344.1	1441458	1443614	D	TpMuguga_01g02420	join(<1441458..1441545,1441575..1441774,1442034..1442203,1442404..1442554,1442792..1442959,1443070..1443202,1443519..1443614)	Theileria parva strain Muguga	3502757
TpMuguga_01g02845	mRNA	TpMuguga_01g02845	NC_007344.1	1443616	1444164	R	TpMuguga_01g02845	complement(1443616..1444164)	Theileria parva strain Muguga	86047663
TpMuguga_01g00687	mRNA	TpMuguga_01g00687	NC_007344.1	1444309	1448982	D	TpMuguga_01g00687	join(<1444309..1444453,1444541..1444703,1445022..1445148,1445203..1445322,1445413..1445503,1445816..1446007,1446212..1447057,1447221..1447576,1447973..1448573,1448754..1448839,1448923..>1448982)	Theileria parva strain Muguga	3502758
TpMuguga_01g00688	mRNA	TpMuguga_01g00688	NC_007344.1	1449007	1451556	D	TpMuguga_01g00688	join(<1449007..1449105,1449199..1450638,1450728..1450982,1451013..1451231,1451263..1451388,1451448..1451556)	Theileria parva strain Muguga	3502759
TpMuguga_01g00689	mRNA	TpMuguga_01g00689	NC_007344.1	1452253	1453602	R	TpMuguga_01g00689	complement(join(1452253..1452325,1452356..1452432,1452463..1452521,1452632..1452772,1453133..1453287,1453378..1453602))	Theileria parva strain Muguga	3502760
TpMuguga_01g00690	mRNA	TpMuguga_01g00690	NC_007344.1	1453750	1454661	R	TpMuguga_01g00690	complement(<1453750..1454661)	Theileria parva strain Muguga	3502784
TpMuguga_01g00691	mRNA	TpMuguga_01g00691	NC_007344.1	1454663	1455742	D	TpMuguga_01g00691	join(1454663..1454935,1455013..1455087,1455353..1455433,1455488..1455742)	Theileria parva strain Muguga	3502785
TpMuguga_01g00692	mRNA	PGA	NC_007344.1	1455753	1458719	D	TpMuguga_01g00692	join(1455753..1456089,1456365..1456970,1457346..1457477,1457575..1457815,1458152..1458372,1458635..1458719)	Theileria parva strain Muguga	3502786
TpMuguga_01g00693	mRNA	TpMuguga_01g00693	NC_007344.1	1458954	1459327	R	TpMuguga_01g00693	complement(join(<1458954..1459050,1459320..>1459327))	Theileria parva strain Muguga	86047603
TpMuguga_01g00694	mRNA	ppip5k2	NC_007344.1	1459682	1465692	R	TpMuguga_01g00694	complement(join(<1459682..1463034,1463974..1464823,1465132..1465239,1465346..1465429,1465519..1465692))	Theileria parva strain Muguga	3502788
TpMuguga_01g00695	mRNA	rrd2	NC_007344.1	1465693	1468041	R	TpMuguga_01g00695	complement(join(1465693..1465905,1466200..1466274,1466485..1466632,1466717..1466816,1467496..1467616,1467685..>1468041))	Theileria parva strain Muguga	3502789
TpMuguga_01g00696	mRNA	TpMuguga_01g00696	NC_007344.1	1468409	1470095	R	TpMuguga_01g00696	complement(join(1468409..1468565,1468937..1469158,1469531..1470095))	Theileria parva strain Muguga	3502593
TpMuguga_01g00697	mRNA	TpMuguga_01g00697	NC_007344.1	1470279	1472287	R	TpMuguga_01g00697	complement(join(1470279..1470765,1471083..1471193,1471376..1472287))	Theileria parva strain Muguga	3502594
TpMuguga_01g00698	mRNA	DHX37	NC_007344.1	1472576	1477930	R	TpMuguga_01g00698	complement(join(1472576..1474060,1474090..1474448,1474641..1474732,1474786..1475638,1475689..1475783,1475814..1475954,1476118..1476569,1477017..1477272,1477494..1477667,1477707..1477930))	Theileria parva strain Muguga	3502595
TpMuguga_01g00699	mRNA	TpMuguga_01g00699	NC_007344.1	1478060	1478915	D	TpMuguga_01g00699	join(1478060..1478353,1478385..1478420,1478450..1478578,1478671..1478720,1478752..1478915)	Theileria parva strain Muguga	3502596
TpMuguga_01g00700	mRNA	TpMuguga_01g00700	NC_007344.1	1479399	1481528	D	TpMuguga_01g00700	<1479399..>1481528	Theileria parva strain Muguga	3502597
TpMuguga_01g00701	mRNA	TpMuguga_01g00701	NC_007344.1	1482120	1484440	D	TpMuguga_01g00701	1482120..1484440	Theileria parva strain Muguga	3502446
TpMuguga_01g00702	mRNA	TpMuguga_01g00702	NC_007344.1	1484531	1485521	D	TpMuguga_01g00702	1484531..>1485521	Theileria parva strain Muguga	3502447
TpMuguga_01g00703	mRNA	TpMuguga_01g00703	NC_007344.1	1485627	1486649	D	TpMuguga_01g00703	<1485627..>1486649	Theileria parva strain Muguga	3502448
TpMuguga_01g00704	mRNA	TpMuguga_01g00704	NC_007344.1	1487018	1489812	D	TpMuguga_01g00704	1487018..1489812	Theileria parva strain Muguga	3502449
TpMuguga_01g00705	mRNA	dohh	NC_007344.1	1489907	1491389	D	TpMuguga_01g00705	join(1489907..1490279,1490319..1490424,1490456..1490503,1490577..1490806,1490836..1490887,1490917..1491389)	Theileria parva strain Muguga	3502450
TpMuguga_01g00706	mRNA	DNAJ1	NC_007344.1	1491564	1493775	D	TpMuguga_01g00706	join(1491564..1491866,1491896..1492044,1492355..1492451,1492543..1492635,1492730..1493239,1493399..1493775)	Theileria parva strain Muguga	3502451
TpMuguga_01g00707	mRNA	eif2a	NC_007344.1	1493843	1496364	R	TpMuguga_01g00707	complement(join(1493843..1493965,1494031..1494336,1494432..1494608,1494709..1494825,1494951..1495100,1495133..1495228,1495260..1495427,1495501..1495601,1495665..1495772,1495936..1496023,1496067..1496137,1496175..>1496364))	Theileria parva strain Muguga	3502452
TpMuguga_01g00708	mRNA	TpMuguga_01g00708	NC_007344.1	1496503	1498957	R	TpMuguga_01g00708	complement(join(1496503..1496800,1496882..1498957))	Theileria parva strain Muguga	3502874
TpMuguga_01g00709	mRNA	Psmd2	NC_007344.1	1499228	1503119	D	TpMuguga_01g00709	join(1499228..1501062,1501268..1503119)	Theileria parva strain Muguga	3502875
TpMuguga_01g00710	mRNA	TpMuguga_01g00710	NC_007344.1	1503222	1505927	R	TpMuguga_01g00710	complement(join(1503222..1504100,1504131..1504217,1504293..1504486,1504558..1505500,1505531..1505607,1505640..1505927))	Theileria parva strain Muguga	3502876
TpMuguga_01g00711	mRNA	RPT1A	NC_007344.1	1506015	1507852	D	TpMuguga_01g00711	join(1506015..1506139,1506242..1506323,1506401..1506579,1506661..1506713,1506744..1506853,1506884..1507094,1507159..1507462,1507541..1507852)	Theileria parva strain Muguga	3502877
TpMuguga_01g00712	mRNA	Ap1m1	NC_007344.1	1507988	1509551	D	TpMuguga_01g00712	1507988..1509551	Theileria parva strain Muguga	3502878
TpMuguga_01g02690	mRNA	TpMuguga_01g02690	NC_007344.1	1509639	1512092	D	TpMuguga_01g02690	join(1509639..1509906,1509938..1510111,1510151..1510249,1510291..1510346,1510376..1510477,1510524..1510719,1510752..1510826,1510861..1510975,1511005..1511102,1511138..1511215,1511248..1511416,1511447..1511595,1511630..1511717,1511749..1511933,1511965..1512092)	Theileria parva strain Muguga	3502879
TpMuguga_01g00715	mRNA	TpMuguga_01g00715	NC_007344.1	1512229	1513741	D	TpMuguga_01g00715	join(<1512229..1512367,1512435..>1513741)	Theileria parva strain Muguga	3502881
TpMuguga_01g00716	mRNA	TpMuguga_01g00716	NC_007344.1	1513866	1514522	R	TpMuguga_01g00716	complement(join(<1513866..1514407,1514441..>1514522))	Theileria parva strain Muguga	3502882
TpMuguga_01g00717	mRNA	TpMuguga_01g00717	NC_007344.1	1514618	1516183	R	TpMuguga_01g00717	complement(<1514618..>1516183)	Theileria parva strain Muguga	3502883
TpMuguga_01g00718	mRNA	TpMuguga_01g00718	NC_007344.1	1516272	1517298	D	TpMuguga_01g00718	join(1516272..1516372,1516421..1516657,1516766..1516900,1516940..1517095,1517166..1517298)	Theileria parva strain Muguga	3502884
TpMuguga_01g00719	mRNA	TpMuguga_01g00719	NC_007344.1	1517173	1518427	R	TpMuguga_01g00719	complement(join(<1517173..1517296,1517328..>1518427))	Theileria parva strain Muguga	3502977
TpMuguga_01g00720	mRNA	TpMuguga_01g00720	NC_007344.1	1518916	1523001	D	TpMuguga_01g00720	<1518916..>1523001	Theileria parva strain Muguga	3502978
TpMuguga_01g00721	mRNA	Ubb	NC_007344.1	1523203	1524191	R	TpMuguga_01g00721	complement(1523203..1524191)	Theileria parva strain Muguga	3502979
TpMuguga_01g00722	mRNA	MCM5	NC_007344.1	1524533	1527564	R	TpMuguga_01g00722	complement(join(<1524533..1524605,1524656..1525131,1525247..1525340,1525370..1525433,1525510..1525767,1525919..1526124,1526165..1526270,1526300..1526465,1526541..1526618,1526710..1526782,1526814..1527139,1527181..>1527564))	Theileria parva strain Muguga	3502980
TpMuguga_01g02520	mRNA	LDL1	NC_007344.1	1527697	1532348	R	TpMuguga_01g02520	complement(join(1527697..1527848,1527885..1529020,1529050..1532235,1532266..1532348))	Theileria parva strain Muguga	86047638
TpMuguga_01g02725	mRNA	TpMuguga_01g02725	NC_007344.1	1532339	1536001	R	TpMuguga_01g02725	complement(join(<1532339..1532487,1532565..1532785,1532823..>1536001))	Theileria parva strain Muguga	3502981
TpMuguga_01g02710	mRNA	TpMuguga_01g02710	NC_007344.1	1536076	1536637	D	TpMuguga_01g02710	join(<1536076..1536382,1536456..>1536637)	Theileria parva strain Muguga	86047652
TpMuguga_01g00724	mRNA	TpMuguga_01g00724	NC_007344.1	1536675	1539524	R	TpMuguga_01g00724	complement(join(<1536675..1537496,1537527..1537715,1537744..1537980,1538045..1538626,1538658..>1539524))	Theileria parva strain Muguga	3502982
TpMuguga_01g00725	mRNA	RNR2	NC_007344.1	1539673	1541182	R	TpMuguga_01g00725	complement(join(<1539673..1539774,1539808..1539923,1539954..1540230,1540368..1540629,1540660..1540829,1541047..1541182))	Theileria parva strain Muguga	3503483
TpMuguga_01g00726	mRNA	TpMuguga_01g00726	NC_007344.1	1541311	1542916	R	TpMuguga_01g00726	complement(1541311..1542916)	Theileria parva strain Muguga	3503484
TpMuguga_01g00727	mRNA	gltX	NC_007344.1	1543538	1545839	D	TpMuguga_01g00727	join(<1543538..1544007,1544067..1544150,1544182..1544263,1544316..1544422,1544479..1544622,1544694..1544828,1544959..1545287,1545373..1545439,1545472..1545604,1545638..1545839)	Theileria parva strain Muguga	3503485
TpMuguga_01g00728	mRNA	CRK2	NC_007344.1	1545940	1547168	D	TpMuguga_01g00728	join(<1545940..1546078,1546108..1546251,1546362..1546521,1546596..1546729,1546817..1546986,1547019..>1547168)	Theileria parva strain Muguga	3503486
TpMuguga_01g02670	mRNA	TpMuguga_01g02670	NC_007344.1	1547268	1547703	R	TpMuguga_01g02670	complement(join(<1547268..1547310,1547340..1547386,1547417..1547516,1547546..>1547703))	Theileria parva strain Muguga	86047650
TpMuguga_01g02205	mRNA	Dnajb9	NC_007344.1	1547883	1549238	R	TpMuguga_01g02205	complement(join(<1547883..1547907,1547937..1547976,1548008..1548060,1548157..1548371,1548456..1548622,1548656..1548832,1548955..1549238))	Theileria parva strain Muguga	3503487
TpMuguga_01g00730	mRNA	Herc2	NC_007344.1	1549217	1551014	D	TpMuguga_01g00730	join(1549217..1549467,1549545..1549584,1549615..1549668,1549699..1550613,1550727..1550860,1550893..1551014)	Theileria parva strain Muguga	3503488
TpMuguga_01g00731	mRNA	TpMuguga_01g00731	NC_007344.1	1551218	1555936	R	TpMuguga_01g00731	complement(1551218..1555936)	Theileria parva strain Muguga	3503531
TpMuguga_01g00732	mRNA	UBC27	NC_007344.1	1556773	1557939	D	TpMuguga_01g00732	join(1556773..1557077,1557115..1557210,1557243..1557320,1557381..1557531,1557566..1557635,1557665..1557716,1557748..1557792,1557827..1557939)	Theileria parva strain Muguga	3503532
TpMuguga_01g00733	mRNA	TIM23-1	NC_007344.1	1558003	1558662	D	TpMuguga_01g00733	join(1558003..1558145,1558179..1558238,1558296..1558662)	Theileria parva strain Muguga	3503533
TpMuguga_01g00734	mRNA	TpMuguga_01g00734	NC_007344.1	1558654	1560028	R	TpMuguga_01g00734	complement(join(1558654..1558731,1558761..1558863,1558892..1559067,1559105..1559461,1559493..1559728,1559779..1560028))	Theileria parva strain Muguga	3503534
TpMuguga_01g00735	mRNA	GRX5	NC_007344.1	1560068	1560943	D	TpMuguga_01g00735	join(1560068..1560458,1560491..1560523,1560566..1560667,1560704..1560943)	Theileria parva strain Muguga	3503535
TpMuguga_01g00736	mRNA	TpMuguga_01g00736	NC_007344.1	1561141	1563462	D	TpMuguga_01g00736	join(1561141..1561176,1561491..1561631,1561663..1561825,1561859..1562886,1562957..1563462)	Theileria parva strain Muguga	3503464
TpMuguga_01g02305	mRNA	TpMuguga_01g02305	NC_007344.1	1563244	1567149	R	TpMuguga_01g02305	complement(join(1563244..1563440,1563477..1563605,1563639..1563856,1563892..1564302,1564335..1564455,1564490..1564561,1564597..1564806,1564869..1567149))	Theileria parva strain Muguga	3503465
TpMuguga_01g02175	mRNA	TpMuguga_01g02175	NC_007344.1	1567224	1569418	R	TpMuguga_01g02175	complement(join(<1567224..1567432,1567464..1567865,1567907..1568021,1568051..1568169,1568201..1568411,1568443..1568679,1568710..1568972,1569003..1569071,1569133..1569418))	Theileria parva strain Muguga	3503468
TpMuguga_01g00741	mRNA	TpMuguga_01g00741	NC_007344.1	1570030	1572993	D	TpMuguga_01g00741	<1570030..>1572993	Theileria parva strain Muguga	3503469
TpMuguga_01g00742	mRNA	TpMuguga_01g00742	NC_007344.1	1573006	1573581	D	TpMuguga_01g00742	join(1573006..1573188,1573224..1573317,1573350..1573446,1573477..1573581)	Theileria parva strain Muguga	3503470
TpMuguga_01g00743	mRNA	TpMuguga_01g00743	NC_007344.1	1573654	1574812	R	TpMuguga_01g00743	complement(join(<1573654..1573801,1573833..1573961,1574000..1574045,1574075..1574107,1574139..1574231,1574263..1574592,1574695..1574812))	Theileria parva strain Muguga	3503269
TpMuguga_01g00744	mRNA	TpMuguga_01g00744	NC_007344.1	1574916	1576098	D	TpMuguga_01g00744	join(1574916..1575239,1575273..1575330,1575362..1575411,1575440..1575540,1575604..1575648,1575680..1575771,1575822..1576098)	Theileria parva strain Muguga	3503270
TpMuguga_01g00745	mRNA	ACBP2	NC_007344.1	1575901	1577009	R	TpMuguga_01g00745	complement(join(1575901..1575997,1576030..1576147,1576185..1576222,1576252..1576318,1576349..1576422,1576455..1576501,1576531..1576642,1576702..1576777,1576838..>1577009))	Theileria parva strain Muguga	3503271
TpMuguga_01g00746	mRNA	TpMuguga_01g00746	NC_007344.1	1577135	1578954	R	TpMuguga_01g00746	complement(join(<1577135..1577215,1577255..1577342,1577383..1577510,1577543..1577964,1577997..1578152,1578184..1578369,1578405..1578632,1578665..1578954))	Theileria parva strain Muguga	3503272
TpMuguga_01g00747	mRNA	NOP56	NC_007344.1	1579403	1581278	D	TpMuguga_01g00747	1579403..1581278	Theileria parva strain Muguga	3503273
TpMuguga_01g00748	mRNA	TpMuguga_01g00748	NC_007344.1	1581285	1582027	D	TpMuguga_01g00748	join(1581285..1581618,1581650..1582027)	Theileria parva strain Muguga	3503274
TpMuguga_01g02600	mRNA	TpMuguga_01g02600	NC_007344.1	1582035	1583812	R	TpMuguga_01g02600	complement(join(1582035..1582270,1582371..1582556,1582587..1582716,1582751..1582855,1582926..1583169,1583212..1583405,1583436..1583524,1583584..1583812))	Theileria parva strain Muguga	3503107
TpMuguga_01g02500	mRNA	TpMuguga_01g02500	NC_007344.1	1583848	1587722	R	TpMuguga_01g02500	complement(join(<1583848..1583961,1583999..1584112,1584139..1584232,1584344..1584450,1584525..1584649,1584737..1585218,1585285..1587722))	Theileria parva strain Muguga	3503109
TpMuguga_01g00753	mRNA	Trap1	NC_007344.1	1587817	1590509	D	TpMuguga_01g00753	join(1587817..1588145,1588211..1588444,1588476..1588738,1588780..1589169,1589205..1589388,1589442..1589566,1589646..1589751,1589790..1589891,1589924..1590180,1590212..1590509)	Theileria parva strain Muguga	3503111
TpMuguga_01g00754	mRNA	AAP19-1	NC_007344.1	1590508	1591250	R	TpMuguga_01g00754	complement(join(1590508..1590712,1590770..1590914,1590997..1591250))	Theileria parva strain Muguga	3502954
TpMuguga_01g00755	mRNA	TpMuguga_01g00755	NC_007344.1	1591251	1593639	R	TpMuguga_01g00755	complement(join(1591251..1592190,1592223..1592351,1592418..1593315,1593349..1593639))	Theileria parva strain Muguga	3502955
TpMuguga_01g00756	mRNA	MLH1	NC_007344.1	1593931	1597262	D	TpMuguga_01g00756	join(1593931..1595195,1595234..1595408,1595440..1595529,1595597..1596228,1596312..1596460,1596506..1596693,1596728..1596941,1596986..1597075,1597106..1597262)	Theileria parva strain Muguga	3502956
TpMuguga_01g00757	mRNA	GSP1	NC_007344.1	1597287	1598598	R	TpMuguga_01g00757	complement(join(1597287..1597859,1597998..1598118,1598351..1598598))	Theileria parva strain Muguga	3502957
TpMuguga_01g00758	mRNA	TpMuguga_01g00758	NC_007344.1	1598795	1601492	R	TpMuguga_01g00758	complement(join(<1598795..1599076,1599165..1599458,1599496..1599603,1599663..1599861,1599923..1600014,1600070..1600173,1600237..1600446,1600504..1600762,1600792..1600920,1600953..1601155,1601198..1601285,1601327..1601492))	Theileria parva strain Muguga	3502958
TpMuguga_01g00759	mRNA	TpMuguga_01g00759	NC_007344.1	1602038	1605895	D	TpMuguga_01g00759	join(<1602038..1602474,1602556..1602770,1602834..1602934,1602971..1603099,1603141..1603269,1603299..1603613,1603678..1603773,1603807..1603950,1603982..1604301,1604340..1604802,1604833..1605022,1605108..1605236,1605268..1605367,1605829..>1605895)	Theileria parva strain Muguga	3502959
TpMuguga_01g00760	mRNA	tyrS	NC_007344.1	1605930	1608120	R	TpMuguga_01g00760	complement(join(1605930..1606188,1606240..1606443,1606475..1606550,1606613..1606784,1606817..1607497,1607530..1607820,1607853..1608120))	Theileria parva strain Muguga	3502570
TpMuguga_01g00761	mRNA	TpMuguga_01g00761	NC_007344.1	1608498	1610145	D	TpMuguga_01g00761	join(1608498..1609303,1609378..1610145)	Theileria parva strain Muguga	3502571
TpMuguga_01g00762	mRNA	TpMuguga_01g00762	NC_007344.1	1610273	1613051	R	TpMuguga_01g00762	complement(join(1610273..1611947,1611984..1612410,1612471..1612532,1612569..1613051))	Theileria parva strain Muguga	3502572
TpMuguga_01g00763	mRNA	AP4S1	NC_007344.1	1613099	1613688	D	TpMuguga_01g00763	join(1613099..1613343,1613398..1613688)	Theileria parva strain Muguga	3502573
TpMuguga_01g00764	mRNA	TpMuguga_01g00764	NC_007344.1	1613715	1615049	R	TpMuguga_01g00764	complement(<1613715..>1615049)	Theileria parva strain Muguga	3502574
TpMuguga_01g00765	mRNA	eif4a3	NC_007344.1	1615156	1616716	R	TpMuguga_01g00765	complement(join(1615156..1615277,1615333..1615443,1615510..1616136,1616220..1616716))	Theileria parva strain Muguga	3502552
TpMuguga_01g02080	mRNA	TpMuguga_01g02080	NC_007344.1	1616716	1618901	D	TpMuguga_01g02080	join(1616716..1617285,1617339..1617603,1617634..1617805,1617860..1618358,1618469..1618542,1618582..1618901)	Theileria parva strain Muguga	3502554
TpMuguga_01g00768	mRNA	TpMuguga_01g00768	NC_007344.1	1618943	1619636	D	TpMuguga_01g00768	join(1618943..1619183,1619218..1619347,1619381..1619425,1619469..1619550,1619606..1619636)	Theileria parva strain Muguga	3502555
TpMuguga_01g00769	mRNA	TpMuguga_01g00769	NC_007344.1	1619606	1620627	D	TpMuguga_01g00769	join(1619606..1619871,1620019..1620161,1620288..1620627)	Theileria parva strain Muguga	3502556
TpMuguga_01g00770	mRNA	TpMuguga_01g00770	NC_007344.1	1620772	1623262	R	TpMuguga_01g00770	complement(1620772..1623262)	Theileria parva strain Muguga	3502557
TpMuguga_01g00771	mRNA	TpMuguga_01g00771	NC_007344.1	1623558	1624080	D	TpMuguga_01g00771	1623558..1624080	Theileria parva strain Muguga	3502558
TpMuguga_01g00772	mRNA	MSI1	NC_007344.1	1624202	1625763	D	TpMuguga_01g00772	1624202..1625763	Theileria parva strain Muguga	3503514
TpMuguga_01g02480	mRNA	XI-2	NC_007344.1	1625847	1633162	R	TpMuguga_01g02480	complement(join(1625847..1626469,1626558..1626716,1626837..1627158,1627266..1627602,1627711..1627839,1627940..1628206,1628332..1628524,1628665..1628723,1628806..1629102,1629237..1629730,1629800..1629911,1629993..1630129,1630211..1630386,1630464..1630663,1630723..1630810,1630879..1632222,1632304..1632482,1632568..1632691,1632849..1633162))	Theileria parva strain Muguga	3503516
TpMuguga_01g00775	mRNA	plcd3a	NC_007344.1	1633684	1636992	D	TpMuguga_01g00775	join(1633684..1634506,1634587..1636992)	Theileria parva strain Muguga	3503518
TpMuguga_01g02530	mRNA	TpMuguga_01g02530	NC_007344.1	1637052	1637842	R	TpMuguga_01g02530	complement(1637052..1637842)	Theileria parva strain Muguga	86047639
TpMuguga_01g02795	mRNA	TpMuguga_01g02795	NC_007344.1	1637851	1640909	R	TpMuguga_01g02795	complement(join(1637851..1637921,1637951..1638369,1638431..1639004,1639081..1639279,1639368..1639506,1639575..1640641,1640676..1640909))	Theileria parva strain Muguga	3503519
TpMuguga_01g00777	mRNA	TpMuguga_01g00777	NC_007344.1	1640902	1641521	R	TpMuguga_01g00777	complement(join(<1640902..1641018,1641110..1641217,1641249..>1641521))	Theileria parva strain Muguga	3502604
TpMuguga_01g00778	mRNA	TpMuguga_01g00778	NC_007344.1	1641583	1643646	R	TpMuguga_01g00778	complement(join(<1641583..1642220,1642284..1643646))	Theileria parva strain Muguga	3502605
TpMuguga_01g00779	mRNA	ADA2	NC_007344.1	1643972	1646416	D	TpMuguga_01g00779	join(1643972..1644597,1644684..1644751,1644807..1644914,1644948..1645038,1645109..1645331,1645411..1645630,1645707..1645823,1645904..1646416)	Theileria parva strain Muguga	3502606
TpMuguga_01g00780	mRNA	TpMuguga_01g00780	NC_007344.1	1646532	1648202	D	TpMuguga_01g00780	<1646532..>1648202	Theileria parva strain Muguga	3502607
TpMuguga_01g00781	mRNA	CDKC-1	NC_007344.1	1648290	1649773	R	TpMuguga_01g00781	complement(join(<1648290..1648370,1648403..1648479,1648567..1649318,1649436..>1649773))	Theileria parva strain Muguga	3502608
TpMuguga_01g02235	mRNA	TpMuguga_01g02235	NC_007344.1	1649726	1650327	D	TpMuguga_01g02235	join(1649726..1650008,1650072..1650327)	Theileria parva strain Muguga	86047621
TpMuguga_01g00782	mRNA	ranbp9	NC_007344.1	1650354	1652261	R	TpMuguga_01g00782	complement(join(<1650354..1650441,1650472..1650532,1650566..1650677,1650771..1651021,1651053..1651166,1651197..1651335,1651410..1651531,1651599..1651753,1651813..1651961,1651993..1652261))	Theileria parva strain Muguga	3502609
TpMuguga_01g00783	mRNA	TpMuguga_01g00783	NC_007344.1	1652263	1653120	D	TpMuguga_01g00783	join(1652263..1652688,1652761..1652822,1652901..1653120)	Theileria parva strain Muguga	3503032
TpMuguga_01g00784	mRNA	bdf1	NC_007344.1	1653107	1655045	D	TpMuguga_01g00784	join(1653107..1654127,1654214..1655045)	Theileria parva strain Muguga	3503033
TpMuguga_01g00785	mRNA	PMM	NC_007344.1	1655087	1656667	R	TpMuguga_01g00785	complement(join(1655087..1655218,1655251..1655328,1655401..1655470,1655516..1655659,1655690..1655781,1655814..1655890,1655921..1656035,1656068..1656667))	Theileria parva strain Muguga	3503034
TpMuguga_01g02370	mRNA	TpMuguga_01g02370	NC_007344.1	1656173	1657314	D	TpMuguga_01g02370	join(1656173..1656301,1656345..1656514,1656549..1656590,1656621..1656706,1656739..1656813,1656848..1657015,1657049..1657149,1657183..1657314)	Theileria parva strain Muguga	86047629
TpMuguga_01g00786	mRNA	yipf5	NC_007344.1	1657462	1658994	D	TpMuguga_01g00786	join(1657462..1657640,1657707..1658845,1658876..1658994)	Theileria parva strain Muguga	3503035
TpMuguga_01g00787	mRNA	trmt6	NC_007344.1	1659060	1660805	R	TpMuguga_01g00787	complement(join(<1659060..1659155,1659190..1659311,1659343..1659762,1659836..1659960,1660020..1660103,1660197..1660302,1660338..1660600,1660639..1660805))	Theileria parva strain Muguga	3503036
TpMuguga_01g00788	mRNA	mrpl19	NC_007344.1	1660823	1661833	R	TpMuguga_01g00788	complement(join(1660823..1661207,1661241..1661361,1661417..1661833))	Theileria parva strain Muguga	3503037
TpMuguga_01g00789	mRNA	TpMuguga_01g00789	NC_007344.1	1661756	1663163	D	TpMuguga_01g00789	1661756..1663163	Theileria parva strain Muguga	3503197
TpMuguga_01g00790	mRNA	TpMuguga_01g00790	NC_007344.1	1663189	1664684	R	TpMuguga_01g00790	complement(1663189..1664684)	Theileria parva strain Muguga	3503198
TpMuguga_01g00791	mRNA	NSUN3	NC_007344.1	1664761	1666167	D	TpMuguga_01g00791	join(1664761..1665230,1665262..1665863,1665924..1666167)	Theileria parva strain Muguga	3503199
TpMuguga_01g00792	mRNA	TpMuguga_01g00792	NC_007344.1	1666240	1668612	D	TpMuguga_01g00792	join(1666240..1666485,1666520..1666618,1666679..1666820,1666911..1667013,1667045..1667256,1667313..1667409,1667443..1667508,1667598..1668116,1668208..1668336,1668367..1668451,1668485..>1668612)	Theileria parva strain Muguga	3503200
TpMuguga_01g00793	mRNA	TpMuguga_01g00793	NC_007344.1	1669127	1669611	D	TpMuguga_01g00793	join(<1669127..1669284,1669410..1669479,1669510..>1669611)	Theileria parva strain Muguga	3503201
TpMuguga_01g00794	mRNA	VPS35A	NC_007344.1	1669728	1672841	R	TpMuguga_01g00794	complement(join(<1669728..1669795,1669958..1670504,1670600..1670905,1671005..1671589,1671618..1671685,1671775..1672531,1672652..1672841))	Theileria parva strain Muguga	3503202
TpMuguga_01g00795	mRNA	TpMuguga_01g00795	NC_007344.1	1672947	1675133	D	TpMuguga_01g00795	join(1672947..1674104,1674178..1674283,1674315..1675133)	Theileria parva strain Muguga	3503228
TpMuguga_01g00796	mRNA	TpMuguga_01g00796	NC_007344.1	1675056	1675301	R	TpMuguga_01g00796	complement(join(<1675056..1675223,1675254..>1675301))	Theileria parva strain Muguga	3503229
TpMuguga_01g00797	mRNA	Prpf6	NC_007344.1	1675405	1679331	D	TpMuguga_01g00797	join(1675405..1675623,1675663..1675716,1675750..1676043,1676074..1676132,1676164..1676540,1676571..1676837,1676981..1677310,1677344..1677478,1677510..1677725,1677760..1677990,1678096..1678276,1678315..1678742,1678832..1678988,1679019..1679331)	Theileria parva strain Muguga	3503230
TpMuguga_01g02565	mRNA	TpMuguga_01g02565	NC_007344.1	1679259	1680010	R	TpMuguga_01g02565	complement(join(1679259..1679369,1679445..1679540,1679571..1679646,1679678..1679741,1679771..1680010))	Theileria parva strain Muguga	86047643
TpMuguga_01g00798	mRNA	TpMuguga_01g00798	NC_007344.1	1680301	1682380	D	TpMuguga_01g00798	join(1680301..1680673,1680704..1680800,1680832..1680970,1681001..1681129,1681161..1681348,1681382..1681571,1681649..1681762,1681794..1681863,1681895..1681957,1681987..1682171,1682202..1682380)	Theileria parva strain Muguga	3503231
TpMuguga_01g00799	mRNA	TIM9	NC_007344.1	1682381	1682963	D	TpMuguga_01g00799	1682381..1682963	Theileria parva strain Muguga	3503489
TpMuguga_01g00800	mRNA	TpMuguga_01g00800	NC_007344.1	1682934	1685243	R	TpMuguga_01g00800	complement(join(1682934..1684147,1684235..1684315,1684347..>1685243))	Theileria parva strain Muguga	3503490
TpMuguga_01g02340	mRNA	TpMuguga_01g02340	NC_007344.1	1685227	1686284	R	TpMuguga_01g02340	complement(join(<1685227..1685380,1685410..1685469,1685501..1685599,1685632..1685780,1685809..1685920,1685953..>1686284))	Theileria parva strain Muguga	3503491
TpMuguga_01g02720	mRNA	PGC	NC_007344.1	1686656	1688378	D	TpMuguga_01g02720	join(1686656..1687296,1687329..1687506,1687537..1687600,1687632..1687771,1687803..1687826,1687855..1687880,1687915..1688014,1688044..1688147,1688180..1688212,1688249..1688378)	Theileria parva strain Muguga	3503493
TpMuguga_01g00804	mRNA	UBC5	NC_007344.1	1688747	1689973	D	TpMuguga_01g00804	join(1688747..1689067,1689107..1689168,1689210..1689289,1689324..1689491,1689525..1689653,1689691..1689973)	Theileria parva strain Muguga	3503494
TpMuguga_01g00805	mRNA	RAD54	NC_007344.1	1690088	1693510	D	TpMuguga_01g00805	join(1690088..1690126,1690234..1690272,1690306..1690424,1690462..1690669,1690701..1690804,1690836..1690907,1690938..1691098,1691129..1691225,1691256..1691344,1691376..1691462,1691492..1691545,1691576..1691677,1691712..1691776,1691808..1691919,1691949..1692221,1692255..1692389,1692422..1692514,1692551..1692719,1692750..1692794,1692825..1693030,1693062..1693510)	Theileria parva strain Muguga	3503495
TpMuguga_01g00806	mRNA	lsm5	NC_007344.1	1693026	1693594	R	TpMuguga_01g00806	complement(join(1693026..1693293,1693328..1693594))	Theileria parva strain Muguga	3503255
TpMuguga_01g00807	mRNA	TpMuguga_01g00807	NC_007344.1	1693843	1697158	D	TpMuguga_01g00807	1693843..>1697158	Theileria parva strain Muguga	86047604
TpMuguga_01g00808	mRNA	Ube4b	NC_007344.1	1697379	1700821	D	TpMuguga_01g00808	1697379..1700821	Theileria parva strain Muguga	3503257
TpMuguga_01g00809	mRNA	rpa1	NC_007344.1	1701049	1707344	R	TpMuguga_01g00809	complement(join(1701049..1701353,1701429..1701775,1701809..1701896,1701952..1704832,1704875..1706850,1706880..1707015,1707045..>1707344))	Theileria parva strain Muguga	3503258
TpMuguga_01g00810	mRNA	AGD6	NC_007344.1	1707743	1709034	R	TpMuguga_01g00810	complement(join(1707743..1708014,1708048..1708173,1708204..1708705,1708741..1709034))	Theileria parva strain Muguga	3503203
TpMuguga_01g00811	mRNA	coaE	NC_007344.1	1709203	1710292	R	TpMuguga_01g00811	complement(join(1709203..1709344,1709376..1709523,1709557..1709779,1709811..1709869,1709900..1710020,1710079..1710292))	Theileria parva strain Muguga	3503204
TpMuguga_01g00812	mRNA	TpMuguga_01g00812	NC_007344.1	1710429	1711663	R	TpMuguga_01g00812	complement(join(1710429..1711325,1711356..1711424,1711464..1711534,1711591..>1711663))	Theileria parva strain Muguga	3503205
TpMuguga_01g02255	mRNA	TpMuguga_01g02255	NC_007344.1	1712013	1714104	R	TpMuguga_01g02255	complement(join(<1712013..1712548,1712623..1712925,1712959..1714104))	Theileria parva strain Muguga	3503206
TpMuguga_01g00815	mRNA	PPWD1	NC_007344.1	1714330	1716692	R	TpMuguga_01g00815	complement(join(1714330..1714414,1714476..1714687,1714734..1714946,1714978..1715078,1715130..1715209,1715262..1715339,1715389..1715733,1715763..1716009,1716040..1716223,1716254..1716370,1716405..1716494,1716526..1716564,1716600..1716692))	Theileria parva strain Muguga	3503208
TpMuguga_01g00816	mRNA	TpMuguga_01g00816	NC_007344.1	1716778	1718292	D	TpMuguga_01g00816	join(1716778..1716892,1716959..1717211,1717277..1717335,1717385..1717744,1717785..1717906,1717952..1718017,1718050..1718175,1718214..1718292)	Theileria parva strain Muguga	3503162
TpMuguga_01g00817	mRNA	TpMuguga_01g00817	NC_007344.1	1718263	1719825	D	TpMuguga_01g00817	1718263..1719825	Theileria parva strain Muguga	3503163
TpMuguga_01g00818	mRNA	asnS	NC_007344.1	1719924	1722117	D	TpMuguga_01g00818	join(1719924..1720217,1720250..1720794,1720825..1720896,1720928..1720987,1721017..1721127,1721173..1721235,1721265..1721390,1721423..1721479,1721514..1721662,1721696..1721833,1721865..1721906,1721938..1722117)	Theileria parva strain Muguga	3503164
TpMuguga_01g00819	mRNA	TpMuguga_01g00819	NC_007344.1	1722152	1722771	R	TpMuguga_01g00819	complement(join(<1722152..1722232,1722261..1722327,1722357..1722410,1722514..1722595,1722627..>1722771))	Theileria parva strain Muguga	3503165
TpMuguga_01g00820	mRNA	pikD	NC_007344.1	1723218	1726530	D	TpMuguga_01g00820	join(<1723218..1723626,1723659..1724004,1724040..1724170,1724204..>1726530)	Theileria parva strain Muguga	3503166
TpMuguga_01g00821	mRNA	TpMuguga_01g00821	NC_007344.1	1726577	1727581	D	TpMuguga_01g00821	join(1726577..1727393,1727429..1727581)	Theileria parva strain Muguga	3503091
TpMuguga_01g00822	mRNA	ddx31	NC_007344.1	1727567	1729840	R	TpMuguga_01g00822	complement(join(1727567..1727862,1727891..1727991,1728031..1728355,1728402..1728652,1728681..1728793,1728824..1729162,1729193..1729295,1729327..1729840))	Theileria parva strain Muguga	3503092
TpMuguga_01g00823	mRNA	TpMuguga_01g00823	NC_007344.1	1729913	1731692	D	TpMuguga_01g00823	1729913..1731692	Theileria parva strain Muguga	3503093
TpMuguga_01g02715	mRNA	TBCK	NC_007344.1	1731807	1735523	D	TpMuguga_01g02715	join(1731807..1731957,1732026..1732709,1732743..1733653,1733712..1734089,1734123..1734217,1734250..1734346,1734376..1734481,1734516..1734683,1734723..1735092,1735126..1735225,1735275..>1735523)	Theileria parva strain Muguga	3503094
TpMuguga_01g02635	mRNA	TpMuguga_01g02635	NC_007344.1	1735626	1737188	D	TpMuguga_01g02635	join(1735626..1736253,1736287..1736446,1736505..1736558,1736588..1736953,1736987..1737041,1737068..1737188)	Theileria parva strain Muguga	3503095
TpMuguga_01g00826	mRNA	HTATSF1	NC_007344.1	1737109	1738705	R	TpMuguga_01g00826	complement(join(<1737109..1737162,1737194..1737256,1737290..1737382,1737422..1737532,1737562..1737615,1737646..1737733,1737766..1737866,1737899..1738050,1738079..1738184,1738216..1738382,1738412..1738506,1738546..1738619,1738652..>1738705))	Theileria parva strain Muguga	3503096
TpMuguga_01g00827	mRNA	TpMuguga_01g00827	NC_007344.1	1738715	1739283	R	TpMuguga_01g00827	complement(join(<1738715..1738764,1738800..1738926,1738961..1739029,1739065..1739283))	Theileria parva strain Muguga	3503072
TpMuguga_01g00828	mRNA	nmd3	NC_007344.1	1739355	1741176	D	TpMuguga_01g00828	join(1739355..1739647,1739719..1740061,1740093..1740462,1740493..1740821,1740853..1740986,1741016..1741176)	Theileria parva strain Muguga	3503073
TpMuguga_01g00829	mRNA	brix1	NC_007344.1	1741177	1742396	D	TpMuguga_01g00829	join(1741177..1741482,1741513..1741571,1741605..1741705,1741741..1742028,1742060..1742154,1742186..1742245,1742275..1742396)	Theileria parva strain Muguga	3503074
TpMuguga_01g00830	mRNA	TpMuguga_01g00830	NC_007344.1	1742550	1743671	D	TpMuguga_01g00830	<1742550..>1743671	Theileria parva strain Muguga	3503075
TpMuguga_01g02770	mRNA	Ap4b1	NC_007344.1	1743597	1746618	R	TpMuguga_01g02770	complement(join(1743597..1743834,1743868..1743926,1743956..1744408,1744438..1744503,1744534..1744608,1744640..1744724,1744755..1744836,1744903..1745077,1745131..1745268,1745303..1745466,1745496..1745797,1745829..1746511,1746544..>1746618))	Theileria parva strain Muguga	3503077
TpMuguga_01g00833	mRNA	TpMuguga_01g00833	NC_007344.1	1746690	1747196	D	TpMuguga_01g00833	join(1746690..1746926,1746959..1747196)	Theileria parva strain Muguga	3503002
TpMuguga_01g00834	mRNA	TpMuguga_01g00834	NC_007344.1	1747221	1750865	R	TpMuguga_01g00834	complement(<1747221..>1750865)	Theileria parva strain Muguga	3503003
TpMuguga_01g00835	mRNA	DHC1	NC_007344.1	1750915	1757117	R	TpMuguga_01g00835	complement(join(<1750915..1750926,1750995..1754558,1754748..1754927,1754961..>1757117))	Theileria parva strain Muguga	3503004
TpMuguga_01g00836	mRNA	TpMuguga_01g00836	NC_007344.1	1757492	1761084	D	TpMuguga_01g00836	join(1757492..1757721,1757753..1759449,1759539..1760121,1760198..1760291,1760381..1760522,1760601..1760943,1760975..1761084)	Theileria parva strain Muguga	3503005
TpMuguga_01g00837	mRNA	TpMuguga_01g00837	NC_007344.1	1761141	1764377	D	TpMuguga_01g00837	<1761141..>1764377	Theileria parva strain Muguga	3503006
TpMuguga_01g00838	mRNA	ATR3	NC_007344.1	1764508	1766782	R	TpMuguga_01g00838	complement(join(1764508..1764729,1764790..1764989,1765081..>1766782))	Theileria parva strain Muguga	3503007
TpMuguga_01g00839	mRNA	TpMuguga_01g00839	NC_007344.1	1766864	1767451	R	TpMuguga_01g00839	complement(join(<1766864..1767246,1767285..1767451))	Theileria parva strain Muguga	3502942
TpMuguga_01g00840	mRNA	TpMuguga_01g00840	NC_007344.1	1767452	1771136	R	TpMuguga_01g00840	complement(join(1767452..1767577,1767639..1767688,1767719..1767802,1767835..1767919,1767949..1768049,1768134..1768906,1768984..1769040,1769070..1769226,1769301..1770117,1770149..1770195,1770229..1770336,1770384..1770537,1770567..1770700,1770775..1770866,1770903..1771136))	Theileria parva strain Muguga	3502943
TpMuguga_01g00841	mRNA	TpMuguga_01g00841	NC_007344.1	1771176	1771717	R	TpMuguga_01g00841	complement(join(1771176..1771322,1771354..1771469,1771500..1771642,1771673..1771717))	Theileria parva strain Muguga	3502944
TpMuguga_01g00842	mRNA	XRN4	NC_007344.1	1771709	1774537	R	TpMuguga_01g00842	complement(join(1771709..1771770,1771800..1771979,1772054..1772209,1772240..1772292,1772322..1772489,1772550..1772704,1772742..1772865,1772896..1772978,1773043..1773226,1773283..1773397,1773461..1773606,1773643..1773798,1773844..1773938,1774002..1774083,1774115..1774160,1774213..1774537))	Theileria parva strain Muguga	3502945
TpMuguga_01g02665	mRNA	TpMuguga_01g02665	NC_007344.1	1774888	1776168	D	TpMuguga_01g02665	join(1774888..1775068,1775115..1775439,1775489..1775534,1775576..1775680,1775712..1775781,1775840..>1776168)	Theileria parva strain Muguga	3502946
TpMuguga_01g02550	mRNA	ube2m	NC_007344.1	1776155	1776817	D	TpMuguga_01g02550	join(<1776155..1776203,1776237..1776421,1776518..>1776817)	Theileria parva strain Muguga	3502406
TpMuguga_01g00845	mRNA	RPT2A	NC_007344.1	1776999	1778752	D	TpMuguga_01g00845	join(1776999..1777034,1777101..1777214,1777297..1777373,1777452..1777905,1778004..1778199,1778280..1778752)	Theileria parva strain Muguga	3502407
TpMuguga_01g00846	mRNA	TpMuguga_01g00846	NC_007344.1	1778742	1779818	D	TpMuguga_01g00846	join(1778742..1778897,1778955..1779017,1779059..1779278,1779309..1779374,1779404..1779510,1779616..1779818)	Theileria parva strain Muguga	3502408
TpMuguga_01g02485	mRNA	TpMuguga_01g02485	NC_007344.1	1779903	1781252	R	TpMuguga_01g02485	complement(1779903..1781252)	Theileria parva strain Muguga	86047636
TpMuguga_01g02695	mRNA	TpMuguga_01g02695	NC_007344.1	1781360	1783887	R	TpMuguga_01g02695	complement(join(1781360..1781486,1781518..1781733,1781864..1782002,1782043..1782287,1782321..1782524,1782578..1782668,1782731..1782825,1782858..1782995,1783044..1783130,1783161..1783887))	Theileria parva strain Muguga	3502410
TpMuguga_01g02855	mRNA	TpMuguga_01g02855	NC_007344.1	1783922	1786120	D	TpMuguga_01g02855	1783922..1786120	Theileria parva strain Muguga	86047665
TpMuguga_01g02860	mRNA	TpMuguga_01g02860	NC_007344.1	1786242	1787038	D	TpMuguga_01g02860	join(1786242..1786346,1786405..1787038)	Theileria parva strain Muguga	3502648
TpMuguga_01g00850	mRNA	FEN1	NC_007344.1	1787047	1788480	R	TpMuguga_01g00850	complement(join(1787047..1787143,1787185..1787300,1787344..1787418,1787450..1787529,1787583..1787653,1787685..1788049,1788129..1788480))	Theileria parva strain Muguga	3502649
TpMuguga_01g00851	mRNA	TpMuguga_01g00851	NC_007344.1	1788894	1790121	D	TpMuguga_01g00851	join(1788894..1789027,1789070..1790121)	Theileria parva strain Muguga	3502650
TpMuguga_01g00852	mRNA	TpMuguga_01g00852	NC_007344.1	1790136	1792380	R	TpMuguga_01g00852	complement(join(1790136..1790374,1790448..1790553,1790632..1790776,1790856..1790983,1791053..1791153,1791210..1791609,1791665..1791818,1791892..1792044,1792139..1792380))	Theileria parva strain Muguga	3502651
TpMuguga_01g00853	mRNA	tif211	NC_007344.1	1792447	1794170	R	TpMuguga_01g00853	complement(join(1792447..1792751,1792843..1792929,1792975..1793062,1793288..1793403,1793480..1793566,1793636..1793856,1793909..1794170))	Theileria parva strain Muguga	3502652
TpMuguga_01g00854	mRNA	TpMuguga_01g00854	NC_007344.1	1794225	1796268	D	TpMuguga_01g00854	join(1794225..1794649,1794708..1794823,1794922..1795056,1795150..1795219,1795250..1795343,1795374..1795470,1795551..1795606,1795637..1796268)	Theileria parva strain Muguga	3502653
TpMuguga_01g00855	mRNA	TpMuguga_01g00855	NC_007344.1	1795784	1797159	R	TpMuguga_01g00855	complement(join(1795784..1796092,1796169..1796546,1796642..1796668,1796765..1796962,1797066..1797102,1797139..1797159))	Theileria parva strain Muguga	3503291
TpMuguga_01g00856	mRNA	TpMuguga_01g00856	NC_007344.1	1797160	1798289	R	TpMuguga_01g00856	complement(join(1797160..1797854,1797888..1798289))	Theileria parva strain Muguga	3503292
TpMuguga_01g00857	mRNA	TpMuguga_01g00857	NC_007344.1	1798332	1799530	R	TpMuguga_01g00857	complement(join(1798332..1798438,1798472..1798542,1798577..1798717,1798766..1798876,1798946..1798988,1799021..1799146,1799215..1799270,1799303..1799530))	Theileria parva strain Muguga	3503293
TpMuguga_01g02840	mRNA	TpMuguga_01g02840	NC_007344.1	1799567	1799989	D	TpMuguga_01g02840	1799567..1799989	Theileria parva strain Muguga	86047662
TpMuguga_01g00858	mRNA	TpMuguga_01g00858	NC_007344.1	1799901	1800876	R	TpMuguga_01g00858	complement(join(1799901..1800259,1800301..1800876))	Theileria parva strain Muguga	3503294
TpMuguga_01g00859	mRNA	PTRH2	NC_007344.1	1800870	1801820	D	TpMuguga_01g00859	join(1800870..1801158,1801260..1801402,1801473..1801547,1801579..1801630,1801749..1801820)	Theileria parva strain Muguga	3503295
TpMuguga_01g00860	mRNA	TpMuguga_01g00860	NC_007344.1	1801897	1802856	D	TpMuguga_01g00860	join(1801897..1802300,1802347..1802616,1802714..1802856)	Theileria parva strain Muguga	3503296
TpMuguga_01g00861	mRNA	TpMuguga_01g00861	NC_007344.1	1803000	1804410	D	TpMuguga_01g00861	join(1803000..1803589,1803717..1804410)	Theileria parva strain Muguga	3503264
TpMuguga_01g00862	mRNA	GUA1	NC_007344.1	1804515	1806349	D	TpMuguga_01g00862	join(1804515..1804621,1804660..1806349)	Theileria parva strain Muguga	3503265
TpMuguga_01g00863	mRNA	PDIL2-3	NC_007344.1	1806531	1808331	R	TpMuguga_01g00863	complement(join(1806531..1806648,1806678..1806790,1806856..1807144,1807274..1807421,1807459..1807534,1807568..1807693,1807747..1807898,1807993..1808331))	Theileria parva strain Muguga	3503266
TpMuguga_01g00864	mRNA	TpMuguga_01g00864	NC_007344.1	1808316	1810229	D	TpMuguga_01g00864	join(1808316..1808713,1808770..1808845,1808902..1808981,1809014..1809130,1809210..1809390,1809424..1809450,1809521..1809555,1809605..1809692,1809724..1809793,1809825..1809881,1809914..1810025,1810115..>1810229)	Theileria parva strain Muguga	3503267
TpMuguga_01g00865	mRNA	srsf1b	NC_007344.1	1810297	1811881	R	TpMuguga_01g00865	complement(join(1810297..1811009,1811156..1811397,1811466..1811578,1811701..1811881))	Theileria parva strain Muguga	3503268
TpMuguga_01g00866	mRNA	Chd2	NC_007344.1	1812804	1818777	D	TpMuguga_01g00866	1812804..1818777	Theileria parva strain Muguga	3503430
TpMuguga_01g00867	mRNA	Tube1	NC_007344.1	1818988	1820322	D	TpMuguga_01g00867	<1818988..>1820322	Theileria parva strain Muguga	3503431
TpMuguga_01g00868	mRNA	TpMuguga_01g00868	NC_007344.1	1820424	1821279	R	TpMuguga_01g00868	complement(join(<1820424..1820666,1820696..1821279))	Theileria parva strain Muguga	3503432
TpMuguga_01g00869	mRNA	TpMuguga_01g00869	NC_007344.1	1821608	1823004	D	TpMuguga_01g00869	join(1821608..1821677,1821714..1821879,1821912..1821964,1822021..1822054,1822093..1822221,1822253..1822934,1822971..1823004)	Theileria parva strain Muguga	3503433
TpMuguga_01g00870	mRNA	TpMuguga_01g00870	NC_007344.1	1823065	1824704	D	TpMuguga_01g00870	join(1823065..1823364,1823397..1823701,1823732..1823793,1823839..1823872,1823911..1824031,1824067..1824162,1824196..1824314,1824344..1824489,1824652..1824704)	Theileria parva strain Muguga	3503434
TpMuguga_01g00871	mRNA	RAD23A	NC_007344.1	1824709	1825988	D	TpMuguga_01g00871	join(1824709..1825004,1825070..1825255,1825289..1825393,1825423..1825485,1825524..1825667,1825697..1825988)	Theileria parva strain Muguga	3503435
TpMuguga_01g00872	mRNA	TpMuguga_01g00872	NC_007344.1	1826474	1829514	D	TpMuguga_01g00872	1826474..1829514	Theileria parva strain Muguga	3503385
TpMuguga_01g00873	mRNA	TpMuguga_01g00873	NC_007344.1	1829627	1830824	R	TpMuguga_01g00873	complement(join(1829627..1829815,1829847..1829986,1830056..1830134,1830167..1830325,1830363..1830472,1830523..1830824))	Theileria parva strain Muguga	3503386
TpMuguga_01g00874	mRNA	PBE2	NC_007344.1	1830869	1832227	R	TpMuguga_01g00874	complement(join(1830869..1830944,1831013..1831099,1831193..1831284,1831356..1831468,1831502..1831609,1831640..1831915,1831981..1832227))	Theileria parva strain Muguga	3503387
TpMuguga_01g00875	mRNA	TpMuguga_01g00875	NC_007344.1	1832257	1834042	R	TpMuguga_01g00875	complement(join(<1832257..1832309,1832343..1832458,1832490..1833120,1833154..1833304,1833335..1833490,1833520..1833651,1833693..1833796,1833841..1834042))	Theileria parva strain Muguga	3503388
TpMuguga_01g00876	mRNA	TpMuguga_01g00876	NC_007344.1	1834164	1834846	R	TpMuguga_01g00876	complement(join(1834164..1834275,1834328..1834402,1834442..1834498,1834600..1834846))	Theileria parva strain Muguga	3503389
TpMuguga_01g00877	mRNA	RAB2A	NC_007344.1	1834823	1836123	R	TpMuguga_01g00877	complement(join(1834823..1834959,1835022..1835064,1835130..1835198,1835229..1835302,1835375..1835502,1835533..1835755,1835833..1836123))	Theileria parva strain Muguga	3503390
TpMuguga_01g00878	mRNA	TpMuguga_01g00878	NC_007344.1	1836260	1837422	R	TpMuguga_01g00878	complement(join(1836260..1836491,1836523..1836636,1836678..1836751,1836811..1836875,1836925..1837047,1837102..1837422))	Theileria parva strain Muguga	3503343
TpMuguga_01g00879	mRNA	TpMuguga_01g00879	NC_007344.1	1837499	1838729	D	TpMuguga_01g00879	1837499..1838729	Theileria parva strain Muguga	3503344
TpMuguga_01g00880	mRNA	RIOK1	NC_007344.1	1838771	1840457	R	TpMuguga_01g00880	complement(1838771..1840457)	Theileria parva strain Muguga	3503345
TpMuguga_01g00881	mRNA	CKB3	NC_007344.1	1840523	1841700	D	TpMuguga_01g00881	join(1840523..1840843,1840873..1840966,1840997..1841328,1841379..1841480,1841512..1841591,1841623..1841700)	Theileria parva strain Muguga	3503346
TpMuguga_01g02560	mRNA	TpMuguga_01g02560	NC_007344.1	1841535	1842705	R	TpMuguga_01g02560	complement(join(1841535..1842031,1842061..1842134,1842162..1842283,1842320..1842402,1842473..1842705))	Theileria parva strain Muguga	86047642
TpMuguga_01g00882	mRNA	TpMuguga_01g00882	NC_007344.1	1843100	1844113	D	TpMuguga_01g00882	<1843100..>1844113	Theileria parva strain Muguga	3503347
TpMuguga_01g00883	mRNA	TpMuguga_01g00883	NC_007344.1	1844126	1846198	D	TpMuguga_01g00883	join(<1844126..1844294,1844325..>1846198)	Theileria parva strain Muguga	3503348
TpMuguga_01g00884	mRNA	EIF5A	NC_007344.1	1846442	1847127	D	TpMuguga_01g00884	1846442..1847127	Theileria parva strain Muguga	3503422
TpMuguga_01g00885	mRNA	tin-10	NC_007344.1	1847113	1847718	D	TpMuguga_01g00885	join(1847113..1847391,1847474..1847570,1847601..1847718)	Theileria parva strain Muguga	3503423
TpMuguga_01g00886	mRNA	cchl	NC_007344.1	1847757	1848636	R	TpMuguga_01g00886	complement(join(1847757..1847946,1848018..1848636))	Theileria parva strain Muguga	3503424
TpMuguga_01g00887	mRNA	PNO1	NC_007344.1	1848683	1849635	D	TpMuguga_01g00887	1848683..1849635	Theileria parva strain Muguga	3503425
TpMuguga_01g00888	mRNA	TpMuguga_01g00888	NC_007344.1	1849843	1850755	D	TpMuguga_01g00888	join(1849843..1850007,1850185..1850755)	Theileria parva strain Muguga	3503426
TpMuguga_01g00890	mRNA	TpMuguga_01g00890	NC_007344.1	1851702	1852400	D	TpMuguga_01g00890	<1851702..1852400	Theileria parva strain Muguga	3503428
TpMuguga_01g00891	mRNA	TpMuguga_01g00891	NC_007344.1	1852542	1853494	D	TpMuguga_01g00891	join(1852542..1852839,1852871..1853011,1853113..1853154,1853184..1853260,1853290..1853334,1853365..1853494)	Theileria parva strain Muguga	3503429
TpMuguga_01g00892	mRNA	rplD	NC_007344.1	1853492	1855468	R	TpMuguga_01g00892	complement(join(<1853492..1853539,1853646..1853858,1853892..1854000,1854059..1854174,1854205..1854314,1854349..1854477,1854508..1854652,1854715..1854923,1854953..1855061,1855170..1855468))	Theileria parva strain Muguga	3503279
TpMuguga_01g00893	mRNA	TpMuguga_01g00893	NC_007344.1	1855460	1856133	R	TpMuguga_01g00893	complement(join(1855460..1855661,1855694..1855792,1855840..1855895,1856028..1856133))	Theileria parva strain Muguga	3503280
TpMuguga_01g00894	mRNA	TpMuguga_01g00894	NC_007344.1	1857919	1858870	D	TpMuguga_01g00894	1857919..1858870	Theileria parva strain Muguga	3503281
TpMuguga_01g00895	mRNA	cbc	NC_007344.1	1859536	1861540	R	TpMuguga_01g00895	complement(join(1859536..1859839,1859880..1860042,1860075..1860397,1860430..1860499,1860562..1860706,1860757..1860866,1860900..1861007,1861077..1861223,1861319..1861540))	Theileria parva strain Muguga	3503282
TpMuguga_01g00896	mRNA	TpMuguga_01g00896	NC_007344.1	1861521	1861950	D	TpMuguga_01g00896	join(<1861521..1861604,1861660..1861745,1861779..1861950)	Theileria parva strain Muguga	3503283
TpMuguga_01g00897	mRNA	TpMuguga_01g00897	NC_007344.1	1862078	1864765	D	TpMuguga_01g00897	1862078..1864765	Theileria parva strain Muguga	3503284
TpMuguga_01g00898	mRNA	EXOSC7	NC_007344.1	1864787	1865826	R	TpMuguga_01g00898	complement(join(<1864787..1865060,1865090..1865241,1865277..1865498,1865538..1865826))	Theileria parva strain Muguga	3503103
TpMuguga_01g00899	mRNA	POLD1	NC_007344.1	1865863	1870146	D	TpMuguga_01g00899	join(<1865863..1865888,1866021..1866193,1866272..1866507,1866539..1866613,1866645..1867059,1867091..1867621,1867654..1867801,1867853..1868123,1868155..1868211,1868241..1868402,1868434..1868514,1868546..1868669,1868702..1868809,1868840..1868895,1868925..1869096,1869128..1869190,1869227..1869289,1869474..1869620,1869653..1869819,1869851..1869924,1869963..1870146)	Theileria parva strain Muguga	3503104
TpMuguga_01g00900	mRNA	TpMuguga_01g00900	NC_007344.1	1870266	1872453	R	TpMuguga_01g00900	complement(join(1870266..1870647,1870678..1870761,1870891..1872453))	Theileria parva strain Muguga	3503105
TpMuguga_01g00901	mRNA	TpMuguga_01g00901	NC_007344.1	1872517	1873922	R	TpMuguga_01g00901	complement(join(1872517..1873231,1873409..1873640,1873703..1873835,1873867..1873922))	Theileria parva strain Muguga	3503106
TpMuguga_01g00902	mRNA	TpMuguga_01g00902	NC_007344.1	1873949	1877233	R	TpMuguga_01g00902	complement(join(1873949..1874152,1874183..1874347,1874380..1875060,1875115..1875285,1875315..1876502,1876533..1877233))	Theileria parva strain Muguga	3503038
TpMuguga_01g00903	mRNA	TpMuguga_01g00903	NC_007344.1	1877317	1877733	D	TpMuguga_01g00903	join(1877317..1877502,1877537..>1877733)	Theileria parva strain Muguga	3503039
TpMuguga_01g00904	mRNA	FIG4	NC_007344.1	1877746	1880387	D	TpMuguga_01g00904	<1877746..1880387	Theileria parva strain Muguga	3503040
TpMuguga_01g00905	mRNA	TpMuguga_01g00905	NC_007344.1	1880402	1882178	R	TpMuguga_01g00905	complement(join(1880402..1880565,1880596..1880650,1880751..1881015,1881043..1881138,1881239..1882178))	Theileria parva strain Muguga	3503041
TpMuguga_01g00906	mRNA	TpMuguga_01g00906	NC_007344.1	1882201	1882784	R	TpMuguga_01g00906	complement(1882201..>1882784)	Theileria parva strain Muguga	3503042
TpMuguga_01g00907	mRNA	TpMuguga_01g00907	NC_007344.1	1883222	1884142	R	TpMuguga_01g00907	complement(join(<1883222..1883355,1883390..1883731,1883811..1884142))	Theileria parva strain Muguga	3503043
TpMuguga_01g00908	mRNA	PSMB7	NC_007344.1	1884129	1885238	R	TpMuguga_01g00908	complement(join(1884129..1884444,1884534..1884977,1885067..1885238))	Theileria parva strain Muguga	3503044
TpMuguga_01g00909	mRNA	TpMuguga_01g00909	NC_007344.1	1885263	1885951	D	TpMuguga_01g00909	join(1885263..1885387,1885425..1885492,1885525..1885951)	Theileria parva strain Muguga	3502742
TpMuguga_01g00910	mRNA	TpMuguga_01g00910	NC_007344.1	1886028	1889274	D	TpMuguga_01g00910	join(1886028..1887071,1887111..1887195,1887252..1887399,1887472..1887762,1887818..1887991,1888032..1888159,1888252..1888926,1888968..1889046,1889082..1889274)	Theileria parva strain Muguga	3502743
TpMuguga_01g00911	mRNA	TpMuguga_01g00911	NC_007344.1	1889276	1889801	D	TpMuguga_01g00911	1889276..1889801	Theileria parva strain Muguga	3502744
TpMuguga_01g00912	mRNA	TpMuguga_01g00912	NC_007344.1	1889942	1890926	D	TpMuguga_01g00912	join(1889942..1890324,1890354..1890926)	Theileria parva strain Muguga	3502745
TpMuguga_01g00913	mRNA	TpMuguga_01g00913	NC_007344.1	1891095	1891907	D	TpMuguga_01g00913	join(1891095..1891622,1891724..1891907)	Theileria parva strain Muguga	3502746
TpMuguga_01g00914	mRNA	TpMuguga_01g00914	NC_007344.1	1891980	1893401	D	TpMuguga_01g00914	join(1891980..1892399,1892496..1893401)	Theileria parva strain Muguga	3502747
TpMuguga_01g00915	mRNA	TpMuguga_01g00915	NC_007344.1	1893393	1894382	R	TpMuguga_01g00915	complement(join(1893393..1893502,1893532..1893610,1893690..1893755,1893785..1893832,1893859..1893880,1893911..1894040,1894083..1894142,1894183..1894382))	Theileria parva strain Muguga	3502748
TpMuguga_01g00916	mRNA	TpMuguga_01g00916	NC_007344.1	1894441	1894990	D	TpMuguga_01g00916	1894441..1894990	Theileria parva strain Muguga	3502681
TpMuguga_01g00917	mRNA	TpMuguga_01g00917	NC_007344.1	1895224	1896484	D	TpMuguga_01g00917	1895224..1896484	Theileria parva strain Muguga	3502682
TpMuguga_01g00918	mRNA	Sec31a	NC_007344.1	1896823	1900960	R	TpMuguga_01g00918	complement(join(1896823..1900393,1900496..1900960))	Theileria parva strain Muguga	3502683
TpMuguga_01g00919	mRNA	TpMuguga_01g00919	NC_007344.1	1901248	1904904	R	TpMuguga_01g00919	complement(join(<1901248..1901378,1901480..1902281,1902327..1902589,1902619..1902892,1902924..1904904))	Theileria parva strain Muguga	3502684
TpMuguga_01g00920	mRNA	TpMuguga_01g00920	NC_007344.1	1904985	1906697	D	TpMuguga_01g00920	join(1904985..1905229,1905260..1905484,1905534..1906501,1906534..1906602,1906632..1906697)	Theileria parva strain Muguga	3502685
TpMuguga_01g00921	mRNA	TpMuguga_01g00921	NC_007344.1	1906768	1912199	D	TpMuguga_01g00921	join(1906768..1907284,1907316..1907353,1907384..1908888,1908920..1908979,1909042..1909222,1909283..1909481,1909551..1909645,1909676..1909747,1909842..1910536,1910591..1910710,1910762..1910832,1910916..1911101,1911179..1911312,1911410..1911467,1911500..1911625,1911676..1911877,1912054..1912199)	Theileria parva strain Muguga	3502790
TpMuguga_01g00923	mRNA	PRP5	NC_007344.1	1912200	1914009	D	TpMuguga_01g00923	join(<1912200..1912340,1912371..1912410,1912451..1912593,1912623..1912714,1912743..1912932,1912971..1913005,1913185..1913355,1913394..1913526,1913569..1913615,1913646..1913756,1913785..1913886,1913916..>1914009)	Theileria parva strain Muguga	3502791
TpMuguga_01g00924	mRNA	RPL31	NC_007344.1	1914103	1914963	R	TpMuguga_01g00924	complement(join(<1914103..1914300,1914372..1914520,1914638..1914963))	Theileria parva strain Muguga	3502792
TpMuguga_01g00925	mRNA	scy1	NC_007344.1	1915170	1917524	D	TpMuguga_01g00925	join(1915170..1915468,1915570..1915722,1915754..1915876,1915906..1916056,1916272..1916410,1916466..1916651,1916730..1917266,1917295..1917457,1917487..>1917524)	Theileria parva strain Muguga	3502793
TpMuguga_01g00926	mRNA	COF1	NC_007344.1	1917679	1918073	R	TpMuguga_01g00926	complement(join(<1917679..1917842,1917875..>1918073))	Theileria parva strain Muguga	3503138
TpMuguga_01g00927	mRNA	VBP1	NC_007344.1	1919384	1920542	R	TpMuguga_01g00927	complement(join(1919384..1919712,1919828..1919917,1920032..1920136,1920198..1920309,1920341..1920411,1920453..1920542))	Theileria parva strain Muguga	3503139
TpMuguga_01g00928	mRNA	TpMuguga_01g00928	NC_007344.1	1920953	1921337	D	TpMuguga_01g00928	join(<1920953..1921093,1921125..>1921337)	Theileria parva strain Muguga	3503140
TpMuguga_01g00929	mRNA	atpH	NC_007344.1	1921345	1922016	R	TpMuguga_01g00929	complement(<1921345..>1922016)	Theileria parva strain Muguga	3503141
TpMuguga_01g00930	mRNA	TpMuguga_01g00930	NC_007344.1	1922324	1924947	D	TpMuguga_01g00930	1922324..>1924947	Theileria parva strain Muguga	3503142
TpMuguga_01g02265	mRNA	TpMuguga_01g02265	NC_007344.1	1925143	1927754	D	TpMuguga_01g02265	join(<1925143..1925479,1925590..1926073,1926103..1926205,1926268..1926402,1926512..1927284,1927369..1927754)	Theileria parva strain Muguga	3503144
TpMuguga_01g00933	mRNA	TpMuguga_01g00933	NC_007344.1	1927897	1932051	R	TpMuguga_01g00933	complement(1927897..1932051)	Theileria parva strain Muguga	3503157
TpMuguga_01g00934	mRNA	hspD	NC_007344.1	1932179	1935435	R	TpMuguga_01g00934	complement(1932179..1935435)	Theileria parva strain Muguga	3503158
TpMuguga_01g02740	mRNA	TpMuguga_01g02740	NC_007344.1	1935444	1936800	D	TpMuguga_01g02740	join(1935444..1935806,1935836..1936459,1936490..1936587,1936617..1936800)	Theileria parva strain Muguga	86047654
TpMuguga_01g02745	mRNA	TpMuguga_01g02745	NC_007344.1	1936899	1938776	D	TpMuguga_01g02745	join(1936899..1937060,1937092..1937187,1937218..1937282,1937324..1937411,1937439..1937614,1937644..1937722,1937752..1937828,1937860..1937943,1937972..1938217,1938246..1938776)	Theileria parva strain Muguga	3503159
TpMuguga_01g02575	mRNA	TpMuguga_01g02575	NC_007344.1	1938787	1943081	D	TpMuguga_01g02575	join(1938787..1939851,1939997..1940469,1940620..1941107,1941141..1941612,1941754..1941905,1942049..1942241,1942291..1942423,1942505..1942641,1942956..1943081)	Theileria parva strain Muguga	3503160
TpMuguga_01g02405	mRNA	TpMuguga_01g02405	NC_007344.1	1943270	1944028	D	TpMuguga_01g02405	1943270..>1944028	Theileria parva strain Muguga	86047632
TpMuguga_01g00937	mRNA	CDC48	NC_007344.1	1944073	1947321	R	TpMuguga_01g00937	complement(join(<1944073..1944833,1945034..1945102,1945159..1945498,1945637..1945749,1945797..1946162,1946266..1947321))	Theileria parva strain Muguga	3503161
TpMuguga_01g00938	mRNA	TpMuguga_01g00938	NC_007344.1	1947953	1950337	D	TpMuguga_01g00938	join(1947953..1948656,1948716..1949856,1949998..1950128,1950169..1950337)	Theileria parva strain Muguga	3503085
TpMuguga_01g00939	mRNA	TpMuguga_01g00939	NC_007344.1	1950339	1951405	D	TpMuguga_01g00939	1950339..1951405	Theileria parva strain Muguga	3503086
TpMuguga_01g00940	mRNA	TpMuguga_01g00940	NC_007344.1	1951475	1952053	D	TpMuguga_01g00940	join(<1951475..1951685,1951755..1952053)	Theileria parva strain Muguga	3503087
TpMuguga_01g00941	mRNA	TpMuguga_01g00941	NC_007344.1	1952242	1954480	D	TpMuguga_01g00941	join(1952242..1952387,1952453..1952596,1952639..1952679,1952765..1953966,1954103..1954182,1954222..1954316,1954347..1954480)	Theileria parva strain Muguga	3503088
TpMuguga_01g00942	mRNA	TpMuguga_01g00942	NC_007344.1	1954463	1956492	R	TpMuguga_01g00942	complement(join(1954463..1954756,1954854..1955141,1955311..1955410,1955523..1955645,1955677..1955823,1955854..1955954,1956028..1956492))	Theileria parva strain Muguga	3503089
TpMuguga_01g00943	mRNA	NEK2	NC_007344.1	1956498	1958381	R	TpMuguga_01g00943	complement(join(1956498..1956887,1956918..1957037,1957121..1957252,1957283..1957428,1957550..1957684,1957714..1957807,1957837..1957909,1957942..1958045,1958121..1958381))	Theileria parva strain Muguga	3503090
TpMuguga_01g00944	mRNA	TpMuguga_01g00944	NC_007344.1	1958692	1960270	R	TpMuguga_01g00944	complement(join(1958692..1959233,1959293..1960270))	Theileria parva strain Muguga	3503119
TpMuguga_01g00945	mRNA	PAB1	NC_007344.1	1960556	1963009	R	TpMuguga_01g00945	complement(1960556..1963009)	Theileria parva strain Muguga	3503120
TpMuguga_01g00946	mRNA	TpMuguga_01g00946	NC_007344.1	1963050	1964383	D	TpMuguga_01g00946	join(1963050..1963246,1963292..1963396,1963529..1963707,1963740..1963877,1963968..1964041,1964071..1964135,1964208..1964383)	Theileria parva strain Muguga	3503121
TpMuguga_01g00947	mRNA	grpE	NC_007344.1	1964453	1965446	D	TpMuguga_01g00947	join(1964453..1964858,1964968..1965446)	Theileria parva strain Muguga	3503122
TpMuguga_01g00948	mRNA	TpMuguga_01g00948	NC_007344.1	1965534	1966551	R	TpMuguga_01g00948	complement(join(1965534..1966034,1966148..1966551))	Theileria parva strain Muguga	3503123
TpMuguga_01g00949	mRNA	SmD1	NC_007344.1	1966577	1967290	D	TpMuguga_01g00949	1966577..1967290	Theileria parva strain Muguga	3503124
TpMuguga_01g00950	mRNA	tim44	NC_007344.1	1967471	1969177	D	TpMuguga_01g00950	join(1967471..1968002,1968032..1968298,1968373..1968548,1968578..1968689,1968774..1968872,1968903..1968991,1969062..1969177)	Theileria parva strain Muguga	3503125
TpMuguga_01g00951	mRNA	TIM17-2	NC_007344.1	1969035	1969905	R	TpMuguga_01g00951	complement(join(1969035..1969149,1969218..1969314,1969347..1969905))	Theileria parva strain Muguga	3502868
TpMuguga_01g00952	mRNA	TpMuguga_01g00952	NC_007344.1	1970065	1973605	D	TpMuguga_01g00952	join(1970065..1970334,1970365..1973451,1973483..>1973605)	Theileria parva strain Muguga	3502869
TpMuguga_01g02280	mRNA	TpMuguga_01g02280	NC_007344.1	1973601	1975641	D	TpMuguga_01g02280	join(1973601..1973728,1973812..1974251,1974314..1974584,1974615..1974694,1974729..1974795,1974828..1974930,1974962..1974999,1975045..1975166,1975207..1975240,1975273..1975344,1975380..1975454,1975491..1975641)	Theileria parva strain Muguga	3502870
TpMuguga_01g00955	mRNA	TpMuguga_01g00955	NC_007344.1	1975642	1976887	D	TpMuguga_01g00955	join(1975642..1975785,1975818..1976018,1976077..1976170,1976202..1976290,1976328..1976388,1976418..1976448,1976496..1976524,1976560..1976671,1976794..1976887)	Theileria parva strain Muguga	3502872
TpMuguga_01g00956	mRNA	BCKDHB	NC_007344.1	1976862	1978727	D	TpMuguga_01g00956	join(1976862..1977265,1977411..1977522,1977586..1977681,1977744..1978079,1978151..1978333,1978465..1978727)	Theileria parva strain Muguga	3502873
TpMuguga_01g02335	mRNA	thrS1	NC_007344.1	1978801	1982129	R	TpMuguga_01g02335	complement(join(1978801..1979048,1979098..1979316,1979405..1979550,1979628..1979697,1979756..1979913,1979965..1980146,1980266..1980361,1980392..1980453,1980503..1980959,1981039..1981130,1981165..1981354,1981413..1981555,1981633..1981869,1981901..1982129))	Theileria parva strain Muguga	3502660
TpMuguga_01g02400	mRNA	atg7	NC_007344.1	1982150	1984633	R	TpMuguga_01g02400	complement(join(1982150..1982288,1982318..1982418,1982452..1982624,1982689..1982838,1982913..1983048,1983079..1983169,1983223..1983304,1983336..1984633))	Theileria parva strain Muguga	3502661
TpMuguga_01g00959	mRNA	TpMuguga_01g00959	NC_007344.1	1984641	1987678	R	TpMuguga_01g00959	complement(join(<1984641..1987358,1987391..>1987678))	Theileria parva strain Muguga	3502662
TpMuguga_01g00960	mRNA	TpMuguga_01g00960	NC_007344.1	1987945	1989557	R	TpMuguga_01g00960	complement(<1987945..1989557)	Theileria parva strain Muguga	3502663
TpMuguga_01g00961	mRNA	NEW1	NC_007344.1	1989727	1992509	R	TpMuguga_01g00961	complement(join(<1989727..1991219,1991271..1992509))	Theileria parva strain Muguga	3502664
TpMuguga_01g00962	mRNA	TpMuguga_01g00962	NC_007344.1	1993017	1994935	D	TpMuguga_01g00962	join(1993017..1993175,1993232..1993558,1993613..1994935)	Theileria parva strain Muguga	3502434
TpMuguga_01g02790	mRNA	TpMuguga_01g02790	NC_007344.1	1994917	1995383	R	TpMuguga_01g02790	complement(join(1994917..1995066,1995097..1995131,1995161..1995383))	Theileria parva strain Muguga	86047657
TpMuguga_01g00963	mRNA	ncbp2	NC_007344.1	1995348	1996156	D	TpMuguga_01g00963	join(1995348..1995603,1995765..1996156)	Theileria parva strain Muguga	3502435
TpMuguga_01g00964	mRNA	RPL35	NC_007344.1	1996431	1997050	D	TpMuguga_01g00964	join(1996431..1996583,1996656..1997050)	Theileria parva strain Muguga	3502436
TpMuguga_01g00965	mRNA	PGK	NC_007344.1	1997238	1998643	D	TpMuguga_01g00965	join(<1997238..1997288,1997447..>1998643)	Theileria parva strain Muguga	3502437
TpMuguga_01g00966	mRNA	TpMuguga_01g00966	NC_007344.1	1999217	2006210	D	TpMuguga_01g00966	1999217..2006210	Theileria parva strain Muguga	3502438
TpMuguga_01g00967	mRNA	TpMuguga_01g00967	NC_007344.1	2006162	2007835	D	TpMuguga_01g00967	join(<2006162..2006295,2006338..2007541,2007581..>2007835)	Theileria parva strain Muguga	3502439
TpMuguga_01g00968	mRNA	Ogg1	NC_007344.1	2008099	2009580	R	TpMuguga_01g00968	complement(join(2008099..2008190,2008219..2008293,2008352..2008450,2008551..2009021,2009083..2009185,2009263..2009580))	Theileria parva strain Muguga	3502440
TpMuguga_01g00969	mRNA	TpMuguga_01g00969	NC_007344.1	2010570	2011823	D	TpMuguga_01g00969	join(<2010570..2010722,2010823..2010902,2010999..2011118,2011171..2011316,2011374..2011519,2011580..2011630,2011660..2011823)	Theileria parva strain Muguga	3503496
TpMuguga_01g00970	mRNA	imp1	NC_007344.1	2011428	2012031	R	TpMuguga_01g00970	complement(join(<2011428..2011528,2011595..2011841,2011927..>2012031))	Theileria parva strain Muguga	3503497
TpMuguga_01g00971	mRNA	TpMuguga_01g00971	NC_007344.1	2012145	2013019	D	TpMuguga_01g00971	join(<2012145..2012297,2012335..2012449,2012511..2012762,2012792..2012850,2012882..>2013019)	Theileria parva strain Muguga	3503498
TpMuguga_01g00972	mRNA	TpMuguga_01g00972	NC_007344.1	2013113	2014256	R	TpMuguga_01g00972	complement(2013113..2014256)	Theileria parva strain Muguga	3503499
TpMuguga_01g00973	mRNA	TpMuguga_01g00973	NC_007344.1	2014735	2017635	R	TpMuguga_01g00973	complement(join(2014735..2014831,2014862..2014912,2014944..2015091,2015125..2016414,2016466..2016629,2016684..2017635))	Theileria parva strain Muguga	3503500
TpMuguga_01g02615	mRNA	TpMuguga_01g02615	NC_007344.1	2017737	2018272	D	TpMuguga_01g02615	join(2017737..2017785,2017930..2018272)	Theileria parva strain Muguga	86047646
TpMuguga_01g00974	mRNA	TpMuguga_01g00974	NC_007344.1	2018301	2019302	R	TpMuguga_01g00974	complement(join(2018301..2018351,2018383..2018491,2018521..2018603,2018678..2018856,2018885..2019010,2019067..2019246,2019277..2019302))	Theileria parva strain Muguga	3503501
TpMuguga_01g00975	mRNA	RPOT3	NC_007344.1	2019456	2023133	R	TpMuguga_01g00975	complement(<2019456..>2023133)	Theileria parva strain Muguga	3503502
TpMuguga_01g00976	mRNA	TpMuguga_01g00976	NC_007344.1	2023270	2025439	D	TpMuguga_01g00976	join(2023270..2023602,2023667..2023774,2023816..2023961,2024082..2024432,2024466..2024650,2024704..2024871,2024904..2025013,2025047..2025175,2025207..2025309,2025342..2025439)	Theileria parva strain Muguga	3503503
TpMuguga_01g00977	mRNA	TpMuguga_01g00977	NC_007344.1	2025521	2026337	R	TpMuguga_01g00977	complement(join(2025521..2025778,2025869..2026012,2026103..2026174,2026277..>2026337))	Theileria parva strain Muguga	3503504
TpMuguga_01g00978	mRNA	RFC2	NC_007344.1	2026371	2028020	R	TpMuguga_01g00978	complement(join(<2026371..2026447,2026486..2026582,2026644..2026706,2026787..2026846,2026889..2026945,2027023..2027085,2027118..2027376,2027429..2027510,2027576..2027628,2027683..2027762,2027795..2028020))	Theileria parva strain Muguga	3503505
TpMuguga_01g00979	mRNA	TpMuguga_01g00979	NC_007344.1	2027932	2028819	D	TpMuguga_01g00979	join(2027932..2028215,2028311..2028359,2028399..2028434,2028464..2028520,2028580..2028640,2028670..2028737,2028779..>2028819)	Theileria parva strain Muguga	3503506
TpMuguga_01g00980	mRNA	rps26b	NC_007344.1	2028781	2029651	R	TpMuguga_01g00980	complement(join(2028781..2029050,2029117..2029304,2029400..2029651))	Theileria parva strain Muguga	3503366
TpMuguga_01g00981	mRNA	TpMuguga_01g00981	NC_007344.1	2029618	2030659	D	TpMuguga_01g00981	join(2029618..2029895,2029955..2030050,2030145..2030220,2030347..2030659)	Theileria parva strain Muguga	3503367
TpMuguga_01g00982	mRNA	TpMuguga_01g00982	NC_007344.1	2030878	2033928	D	TpMuguga_01g00982	2030878..2033928	Theileria parva strain Muguga	3503368
TpMuguga_01g00983	mRNA	CPK1	NC_007344.1	2033931	2036231	R	TpMuguga_01g00983	complement(join(2033931..2034105,2034177..2034295,2034328..2034436,2034523..2034956,2035070..2035164,2035248..2035776,2035903..2036231))	Theileria parva strain Muguga	3503369
TpMuguga_01g00984	mRNA	TpMuguga_01g00984	NC_007344.1	2036254	2037688	D	TpMuguga_01g00984	join(2036254..2036913,2036948..2037308,2037341..2037521,2037555..>2037688)	Theileria parva strain Muguga	3503370
TpMuguga_01g02680	mRNA	TpMuguga_01g02680	NC_007344.1	2037647	2038304	D	TpMuguga_01g02680	join(2037647..2037859,2037893..2038007,2038037..2038111,2038164..2038217,2038251..>2038304)	Theileria parva strain Muguga	3503371
TpMuguga_01g02675	mRNA	wdr82-a	NC_007344.1	2038286	2039794	D	TpMuguga_01g02675	join(<2038286..2038341,2038377..2038508,2038538..2038644,2038708..2038771,2038802..2038910,2038988..2039113,2039143..2039199,2039247..2039436,2039475..2039546,2039578..2039794)	Theileria parva strain Muguga	3503409
TpMuguga_01g00987	mRNA	TpMuguga_01g00987	NC_007344.1	2040368	2043609	D	TpMuguga_01g00987	2040368..2043609	Theileria parva strain Muguga	3503410
TpMuguga_01g02425	mRNA	tfb2	NC_007344.1	2043867	2046018	D	TpMuguga_01g02425	join(2043867..2044852,2044921..>2046018)	Theileria parva strain Muguga	3503412
TpMuguga_01g00990	mRNA	TpMuguga_01g00990	NC_007344.1	2046034	2047387	R	TpMuguga_01g00990	complement(join(2046034..2046536,2046690..2046887,2046931..2047017,2047164..2047387))	Theileria parva strain Muguga	3503413
TpMuguga_01g00991	mRNA	TpMuguga_01g00991	NC_007344.1	2047618	2048820	D	TpMuguga_01g00991	join(2047618..2048013,2048167..2048356,2048408..2048533,2048577..2048689,2048781..>2048820)	Theileria parva strain Muguga	3503414
TpMuguga_01g00992	mRNA	LSM6	NC_007344.1	2048865	2049259	D	TpMuguga_01g00992	join(2048865..2048959,2049011..2049124,2049194..2049259)	Theileria parva strain Muguga	3503209
TpMuguga_01g00993	mRNA	TpMuguga_01g00993	NC_007344.1	2049300	2053526	R	TpMuguga_01g00993	complement(<2049300..2053526)	Theileria parva strain Muguga	3503210
TpMuguga_01g00994	mRNA	PRPS2	NC_007344.1	2053669	2055092	R	TpMuguga_01g00994	complement(join(2053669..2054301,2054369..2055092))	Theileria parva strain Muguga	3503211
TpMuguga_01g00995	mRNA	TpMuguga_01g00995	NC_007344.1	2055069	2056109	R	TpMuguga_01g00995	complement(2055069..2056109)	Theileria parva strain Muguga	3503212
TpMuguga_01g00996	mRNA	TpMuguga_01g00996	NC_007344.1	2055912	2056490	D	TpMuguga_01g00996	join(2055912..2055938,2055971..2056033,2056147..2056230,2056289..2056357,2056390..2056490)	Theileria parva strain Muguga	3503213
TpMuguga_01g00997	mRNA	ERCC1	NC_007344.1	2056110	2057348	R	TpMuguga_01g00997	complement(join(2056110..2056467,2056547..2056606,2056668..2056946,2056976..2057184,2057224..2057348))	Theileria parva strain Muguga	3503214
TpMuguga_01g00998	mRNA	TpMuguga_01g00998	NC_007344.1	2057600	2058506	D	TpMuguga_01g00998	join(2057600..2057689,2057720..2057762,2057793..2057865,2057895..2057992,2058044..2058111,2058144..>2058506)	Theileria parva strain Muguga	3503215
TpMuguga_01g00999	mRNA	TpMuguga_01g00999	NC_007344.1	2058502	2059062	D	TpMuguga_01g00999	join(2058502..2058583,2058621..2058739,2058813..2058913,2058945..2059062)	Theileria parva strain Muguga	3503059
TpMuguga_01g01000	mRNA	TpMuguga_01g01000	NC_007344.1	2059078	2061298	R	TpMuguga_01g01000	complement(join(2059078..2059326,2059384..2059504,2059540..2060523,2060557..2060659,2060722..2061298))	Theileria parva strain Muguga	3503060
TpMuguga_01g01001	mRNA	TpMuguga_01g01001	NC_007344.1	2061430	2063613	D	TpMuguga_01g01001	<2061430..>2063613	Theileria parva strain Muguga	3503061
TpMuguga_01g01002	mRNA	yloA	NC_007344.1	2063689	2065777	R	TpMuguga_01g01002	complement(join(2063689..2064212,2064314..2064573,2064640..>2065777))	Theileria parva strain Muguga	3503062
TpMuguga_01g01003	mRNA	tssc1	NC_007344.1	2065798	2067113	R	TpMuguga_01g01003	complement(join(<2065798..2065908,2065986..2066456,2066493..2066580,2066646..2066739,2066770..2066920,2066949..>2067113))	Theileria parva strain Muguga	3503063
TpMuguga_01g01004	mRNA	ALATS	NC_007344.1	2067157	2070618	R	TpMuguga_01g01004	complement(join(2067157..2067240,2067274..2067625,2067700..2068005,2068119..2068570,2068674..2070618))	Theileria parva strain Muguga	3503064
TpMuguga_01g02810	mRNA	VPS53	NC_007344.1	2070718	2073314	D	TpMuguga_01g02810	join(2070718..2071215,2071282..2071661,2071692..2071750,2071789..2071878,2071968..2072295,2072328..2072660,2072693..2073049,2073097..2073189,2073219..2073314)	Theileria parva strain Muguga	3503008
TpMuguga_01g01007	mRNA	TIM50	NC_007344.1	2073812	2075012	R	TpMuguga_01g01007	complement(2073812..2075012)	Theileria parva strain Muguga	3503010
TpMuguga_01g01008	mRNA	TpMuguga_01g01008	NC_007344.1	2075148	2077145	R	TpMuguga_01g01008	complement(2075148..2077145)	Theileria parva strain Muguga	3503011
TpMuguga_01g01009	mRNA	TpMuguga_01g01009	NC_007344.1	2077209	2078813	D	TpMuguga_01g01009	join(<2077209..2077307,2077468..2078312,2078432..2078813)	Theileria parva strain Muguga	3503012
TpMuguga_01g01010	mRNA	TpMuguga_01g01010	NC_007344.1	2078991	2081152	D	TpMuguga_01g01010	join(2078991..2079293,2079421..2079547,2079600..2079774,2079862..2079994,2080074..2080193,2080292..2081152)	Theileria parva strain Muguga	3503013
TpMuguga_01g01011	mRNA	TpMuguga_01g01011	NC_007344.1	2081919	2082989	D	TpMuguga_01g01011	<2081919..>2082989	Theileria parva strain Muguga	3502812
TpMuguga_01g01012	mRNA	ARP4	NC_007344.1	2083183	2084863	R	TpMuguga_01g01012	complement(join(<2083183..2084322,2084450..2084863))	Theileria parva strain Muguga	3502813
TpMuguga_01g01013	mRNA	TpMuguga_01g01013	NC_007344.1	2084841	2086757	R	TpMuguga_01g01013	complement(join(2084841..2085483,2085626..2085802,2085905..2086757))	Theileria parva strain Muguga	3502814
TpMuguga_01g01014	mRNA	TpMuguga_01g01014	NC_007344.1	2086764	2087795	D	TpMuguga_01g01014	join(2086764..2087013,2087188..2087317,2087395..2087529,2087617..>2087795)	Theileria parva strain Muguga	3502815
TpMuguga_01g01015	mRNA	gpn2	NC_007344.1	2087822	2088839	D	TpMuguga_01g01015	join(<2087822..2088047,2088156..2088227,2088262..2088362,2088417..>2088839)	Theileria parva strain Muguga	3502816
TpMuguga_01g01016	mRNA	TpMuguga_01g01016	NC_007344.1	2089277	2090107	D	TpMuguga_01g01016	join(<2089277..2089397,2089428..2089505,2089578..2089636,2089671..2089701,2089780..2089854,2089885..2089944,2090026..2090107)	Theileria parva strain Muguga	3502817
TpMuguga_01g01017	mRNA	mocs3	NC_007344.1	2090227	2092586	R	TpMuguga_01g01017	complement(join(2090227..2090802,2090882..2091017,2091067..2091394,2091457..2091560,2091635..2091716,2091768..2091819,2091897..2092586))	Theileria parva strain Muguga	3502818
TpMuguga_01g01018	mRNA	TpMuguga_01g01018	NC_007344.1	2092872	2095276	D	TpMuguga_01g01018	join(<2092872..2093043,2093148..2095276)	Theileria parva strain Muguga	3502587
TpMuguga_01g01019	mRNA	TpMuguga_01g01019	NC_007344.1	2095334	2097910	R	TpMuguga_01g01019	complement(join(2095334..2097007,2097095..2097633,2097743..2097910))	Theileria parva strain Muguga	3502588
TpMuguga_01g01020	mRNA	TpMuguga_01g01020	NC_007344.1	2097911	2099513	R	TpMuguga_01g01020	complement(join(2097911..2098219,2098317..2098490,2098559..2098843,2098885..2099010,2099153..2099513))	Theileria parva strain Muguga	3502589
TpMuguga_01g01021	mRNA	TpMuguga_01g01021	NC_007344.1	2099598	2103724	D	TpMuguga_01g01021	join(2099598..2099962,2100063..2100197,2100248..2101267,2101317..2102897,2102991..2103562,2103633..2103724)	Theileria parva strain Muguga	3502590
TpMuguga_01g01022	mRNA	TpMuguga_01g01022	NC_007344.1	2103786	2105376	R	TpMuguga_01g01022	complement(join(2103786..2104143,2104235..2104390,2104461..2105376))	Theileria parva strain Muguga	3502591
TpMuguga_01g01023	mRNA	MRTO4	NC_007344.1	2105439	2106555	D	TpMuguga_01g01023	join(2105439..2105742,2105834..2105924,2105994..2106125,2106190..2106351,2106420..2106555)	Theileria parva strain Muguga	3502700
TpMuguga_01g01024	mRNA	argS	NC_007344.1	2106536	2109220	D	TpMuguga_01g01024	join(2106536..2106656,2106726..2106797,2106893..2106993,2107129..2107394,2107461..2108245,2108312..2108537,2108595..2108771,2108806..2109220)	Theileria parva strain Muguga	3502701
TpMuguga_01g01025	mRNA	TpMuguga_01g01025	NC_007344.1	2108594	2110581	R	TpMuguga_01g01025	complement(join(2108594..2109401,2109488..2110581))	Theileria parva strain Muguga	3502702
TpMuguga_01g01026	mRNA	TpMuguga_01g01026	NC_007344.1	2110600	2112081	D	TpMuguga_01g01026	join(2110600..2110861,2110911..2112081)	Theileria parva strain Muguga	3502703
TpMuguga_01g01027	mRNA	UTP15	NC_007344.1	2112069	2113974	R	TpMuguga_01g01027	complement(join(2112069..2112436,2112536..2113494,2113673..2113974))	Theileria parva strain Muguga	3502704
TpMuguga_01g02245	mRNA	CCAMK	NC_007344.1	2114036	2116088	D	TpMuguga_01g02245	join(2114036..2114570,2114656..2114867,2114955..2115502,2115570..2115680,2115777..2116088)	Theileria parva strain Muguga	3502705
TpMuguga_01g02435	mRNA	TpMuguga_01g02435	NC_007344.1	2116220	2121722	D	TpMuguga_01g02435	join(<2116220..2120017,2120073..2120523,2120585..2120940,2120973..2121097,2121179..>2121722)	Theileria parva strain Muguga	3502737
TpMuguga_01g02440	mRNA	TpMuguga_01g02440	NC_007344.1	2121816	2123129	D	TpMuguga_01g02440	<2121816..>2123129	Theileria parva strain Muguga	86047633
TpMuguga_01g01032	mRNA	nifk	NC_007344.1	2123147	2123969	D	TpMuguga_01g01032	join(2123147..2123382,2123425..2123577,2123666..2123969)	Theileria parva strain Muguga	3502738
TpMuguga_01g01033	mRNA	TpMuguga_01g01033	NC_007344.1	2124020	2125565	D	TpMuguga_01g01033	join(2124020..2124330,2124389..2124573,2124606..2125091,2125192..>2125565)	Theileria parva strain Muguga	3502739
TpMuguga_01g01034	mRNA	TpMuguga_01g01034	NC_007344.1	2125527	2126386	D	TpMuguga_01g01034	join(2125527..2126059,2126122..2126386)	Theileria parva strain Muguga	3502740
TpMuguga_01g01035	mRNA	TpMuguga_01g01035	NC_007344.1	2126440	2127738	R	TpMuguga_01g01035	complement(join(2126440..2127565,2127595..2127738))	Theileria parva strain Muguga	3502741
TpMuguga_01g01036	mRNA	TpMuguga_01g01036	NC_007344.1	2127812	2129694	D	TpMuguga_01g01036	join(<2127812..2129352,2129517..>2129694)	Theileria parva strain Muguga	3502926
TpMuguga_01g02300	mRNA	TpMuguga_01g02300	NC_007344.1	2129704	2130024	R	TpMuguga_01g02300	complement(join(<2129704..2129797,2129828..>2130024))	Theileria parva strain Muguga	86047626
TpMuguga_01g01037	mRNA	TpMuguga_01g01037	NC_007344.1	2130116	2131628	R	TpMuguga_01g01037	complement(join(2130116..2130194,2130229..2130336,2130439..2130575,2130625..2130844,2130928..2131014,2131050..2131339,2131373..2131628))	Theileria parva strain Muguga	3502927
TpMuguga_01g02060	mRNA	TpMuguga_01g02060	NC_007344.1	2131841	2136891	D	TpMuguga_01g02060	2131841..2136891	Theileria parva strain Muguga	3502929
TpMuguga_01g01040	mRNA	SUMO1	NC_007344.1	2136892	2137522	D	TpMuguga_01g01040	join(2136892..2137195,2137227..2137323,2137363..2137522)	Theileria parva strain Muguga	3502930
TpMuguga_01g01041	mRNA	clpP2	NC_007344.1	2137499	2138891	D	TpMuguga_01g01041	join(2137499..2137802,2137844..2137883,2137914..2137997,2138029..2138095,2138127..2138304,2138336..2138553,2138587..2138891)	Theileria parva strain Muguga	3502931
TpMuguga_01g01042	mRNA	TpMuguga_01g01042	NC_007344.1	2141952	2147337	D	TpMuguga_01g01042	join(<2141952..2146369,2146408..2147190,2147301..>2147337)	Theileria parva strain Muguga	3502932
TpMuguga_01g01043	mRNA	TpMuguga_01g01043	NC_007344.1	2147194	2152564	R	TpMuguga_01g01043	complement(join(2147194..2147249,2147281..2148770,2148809..2151679,2151715..2151823,2151856..>2152564))	Theileria parva strain Muguga	3502933
TpMuguga_01g01044	mRNA	TpMuguga_01g01044	NC_007344.1	2152658	2155697	R	TpMuguga_01g01044	complement(join(<2152658..2153883,2153914..2154234,2154266..2154616,2154647..2154802,2154835..2154969,2154999..2155331,2155519..2155543,2155623..>2155697))	Theileria parva strain Muguga	3502934
TpMuguga_01g01045	mRNA	TpMuguga_01g01045	NC_007344.1	2156172	2158997	D	TpMuguga_01g01045	join(2156172..2156719,2156752..2156902,2156932..2157100,2157131..2157218,2157248..2157384,2157417..2157535,2157569..2157658,2157736..2158140,2158172..2158461,2158492..2158679,2158712..2158997)	Theileria parva strain Muguga	3502935
TpMuguga_01g01046	mRNA	TOM40-1	NC_007344.1	2159067	2160723	D	TpMuguga_01g01046	join(2159067..2159588,2159619..2159870,2159903..2160045,2160111..2160187,2160218..2160284,2160316..2160473,2160507..2160723)	Theileria parva strain Muguga	3502936
TpMuguga_01g01047	mRNA	TpMuguga_01g01047	NC_007344.1	2160776	2161630	R	TpMuguga_01g01047	complement(join(2160776..2160979,2161045..2161630))	Theileria parva strain Muguga	3503471
TpMuguga_01g02595	mRNA	TpMuguga_01g02595	NC_007344.1	2161704	2165662	D	TpMuguga_01g02595	join(2161704..2163866,2163951..2164091,2164189..2164270,2164386..2164816,2164929..2165007,2165102..2165255,2165316..2165662)	Theileria parva strain Muguga	3503473
TpMuguga_01g01050	mRNA	aco1	NC_007344.1	2165733	2169399	R	TpMuguga_01g01050	complement(join(2165733..2165825,2165858..2165976,2166045..2166181,2166262..2166601,2166697..2167285,2167398..2167573,2167618..2168326,2168414..2168684,2168718..2168822,2168916..2169399))	Theileria parva strain Muguga	3503474
TpMuguga_01g01051	mRNA	Rpl8	NC_007344.1	2169577	2170716	R	TpMuguga_01g01051	complement(join(2169577..2170352,2170494..2170716))	Theileria parva strain Muguga	3503475
TpMuguga_01g01052	mRNA	SKI6	NC_007344.1	2171022	2172104	R	TpMuguga_01g01052	complement(join(2171022..2171185,2171216..2171341,2171393..2171449,2171484..2171860,2171942..2172104))	Theileria parva strain Muguga	3503476
TpMuguga_01g02630	mRNA	TpMuguga_01g02630	NC_007344.1	2172081	2172822	R	TpMuguga_01g02630	complement(2172081..2172822)	Theileria parva strain Muguga	86047648
TpMuguga_01g01053	mRNA	TpMuguga_01g01053	NC_007344.1	2172891	2175639	D	TpMuguga_01g01053	join(2172891..2173357,2173389..2173465,2173519..2173911,2173944..2174068,2174111..2174953,2175012..2175174,2175266..2175351,2175385..2175639)	Theileria parva strain Muguga	3503316
TpMuguga_01g01054	mRNA	TpMuguga_01g01054	NC_007344.1	2175631	2178160	D	TpMuguga_01g01054	join(2175631..2176132,2176167..2177186,2177219..2177412,2177570..>2178160)	Theileria parva strain Muguga	3503317
TpMuguga_01g02195	mRNA	TpMuguga_01g02195	NC_007344.1	2178163	2178450	R	TpMuguga_01g02195	complement(<2178163..>2178450)	Theileria parva strain Muguga	86047618
TpMuguga_01g01055	mRNA	TpMuguga_01g01055	NC_007344.1	2178588	2180410	R	TpMuguga_01g01055	complement(join(2178588..2178709,2178743..2178828,2178861..2179345,2179377..2179603,2179633..2179696,2179742..2179906,2179986..2180057,2180124..2180410))	Theileria parva strain Muguga	3503318
TpMuguga_01g01056	mRNA	TpMuguga_01g01056	NC_007344.1	2180629	2181767	D	TpMuguga_01g01056	2180629..2181767	Theileria parva strain Muguga	3503319
TpMuguga_01g01057	mRNA	TpMuguga_01g01057	NC_007344.1	2181834	2182452	R	TpMuguga_01g01057	complement(join(<2181834..2181916,2181978..>2182452))	Theileria parva strain Muguga	3503320
TpMuguga_01g01058	mRNA	TpMuguga_01g01058	NC_007344.1	2182799	2184807	R	TpMuguga_01g01058	complement(join(2182799..2184190,2184222..2184333,2184375..2184807))	Theileria parva strain Muguga	3503321
TpMuguga_01g01059	mRNA	CDC5L	NC_007344.1	2184926	2187590	R	TpMuguga_01g01059	complement(join(2184926..2185012,2185043..2185191,2185222..2185439,2185473..2185549,2185591..2186020,2186085..2186197,2186232..2186318,2186349..2186492,2186525..2186717,2186749..2187122,2187158..2187344,2187390..2187590))	Theileria parva strain Muguga	3503322
TpMuguga_01g01060	mRNA	TpMuguga_01g01060	NC_007344.1	2187572	2189421	R	TpMuguga_01g01060	complement(join(2187572..2187878,2187910..2188059,2188089..2188187,2188219..2188341,2188372..2188460,2188491..2188662,2188697..2188990,2189025..2189150,2189188..2189421))	Theileria parva strain Muguga	3503349
TpMuguga_01g01061	mRNA	TpMuguga_01g01061	NC_007344.1	2189431	2191010	D	TpMuguga_01g01061	join(2189431..2189580,2189635..2189885,2189916..2190030,2190059..2190126,2190156..2190324,2190355..2190487,2190520..2191010)	Theileria parva strain Muguga	3503350
TpMuguga_01g01062	mRNA	RFC3	NC_007344.1	2191333	2192675	R	TpMuguga_01g01062	complement(join(2191333..2191538,2191576..2191645,2191676..2191914,2191946..2192008,2192044..2192162,2192201..2192314,2192352..2192424,2192460..2192675))	Theileria parva strain Muguga	3503352
TpMuguga_01g02105	mRNA	TpMuguga_01g02105	NC_007344.1	2192666	2194185	R	TpMuguga_01g02105	complement(join(2192666..2192793,2192833..2192892,2192924..2193039,2193075..2193161,2193190..2193699,2193730..2193876,2193925..2193982,2194014..2194185))	Theileria parva strain Muguga	86047613
TpMuguga_01g02610	mRNA	TpMuguga_01g02610	NC_007344.1	2194188	2199968	R	TpMuguga_01g02610	complement(join(2194188..2194587,2194635..2196947,2197100..2199968))	Theileria parva strain Muguga	3503353
TpMuguga_01g02455	mRNA	TpMuguga_01g02455	NC_007344.1	2200068	2202229	R	TpMuguga_01g02455	complement(join(2200068..2200302,2200335..2200496,2200529..2200682,2200715..2200802,2200839..2200914,2200945..2201137,2201169..2201287,2201319..2201463,2201504..2202229))	Theileria parva strain Muguga	86047634
TpMuguga_01g01064	mRNA	TpMuguga_01g01064	NC_007344.1	2202503	2203924	D	TpMuguga_01g01064	join(2202503..2202581,2202736..2203119,2203150..2203715,2203750..2203924)	Theileria parva strain Muguga	3503126
TpMuguga_01g01065	mRNA	TpMuguga_01g01065	NC_007344.1	2203777	2206055	R	TpMuguga_01g01065	complement(join(<2203777..2203821,2203851..2203940,2203972..2204142,2204172..2204299,2204328..2204464,2204494..2205059,2205093..2206055))	Theileria parva strain Muguga	3503127
TpMuguga_01g01066	mRNA	TpMuguga_01g01066	NC_007344.1	2206121	2207498	D	TpMuguga_01g01066	join(2206121..2206348,2206386..2206537,2206568..2206670,2206700..2206821,2206851..2206970,2207001..2207160,2207192..2207337,2207368..2207498)	Theileria parva strain Muguga	3503128
TpMuguga_01g01067	mRNA	TpMuguga_01g01067	NC_007344.1	2207923	2209361	D	TpMuguga_01g01067	join(2207923..2208410,2208443..2208648,2208680..2208812,2208845..2209183,2209213..2209361)	Theileria parva strain Muguga	3503129
TpMuguga_01g02815	mRNA	TpMuguga_01g02815	NC_007344.1	2209365	2209857	R	TpMuguga_01g02815	complement(join(2209365..2209425,2209455..2209584,2209613..2209715,2209797..2209857))	Theileria parva strain Muguga	86047659
TpMuguga_01g01068	mRNA	TpMuguga_01g01068	NC_007344.1	2210134	2210896	R	TpMuguga_01g01068	complement(join(<2210134..2210180,2210294..2210546,2210579..2210656,2210876..>2210896))	Theileria parva strain Muguga	3503130
TpMuguga_01g01069	mRNA	STP2	NC_007344.1	2211471	2213491	R	TpMuguga_01g01069	complement(2211471..2213491)	Theileria parva strain Muguga	3503151
TpMuguga_01g01070	mRNA	RpL40	NC_007344.1	2214028	2214756	R	TpMuguga_01g01070	complement(join(2214028..2214470,2214574..2214756))	Theileria parva strain Muguga	3503152
TpMuguga_01g01071	mRNA	TpMuguga_01g01071	NC_007344.1	2214725	2216479	D	TpMuguga_01g01071	join(2214725..2215413,2215443..2215695,2215726..2216203,2216234..2216287,2216320..2216363,2216404..2216479)	Theileria parva strain Muguga	3503153
TpMuguga_01g01072	mRNA	qtrt1	NC_007344.1	2216429	2218180	D	TpMuguga_01g01072	join(2216429..2216629,2216672..2216807,2216840..2216964,2216994..2217094,2217143..2217338,2217367..2217572,2217600..2217675,2217704..2217845,2217880..2218180)	Theileria parva strain Muguga	3503154
TpMuguga_01g01073	mRNA	CPK4	NC_007344.1	2218181	2220022	D	TpMuguga_01g01073	join(2218181..2219102,2219136..2219302,2219333..2219593,2219624..2219732,2219764..2220022)	Theileria parva strain Muguga	3503155
TpMuguga_01g01074	mRNA	TpMuguga_01g01074	NC_007344.1	2220237	2221656	D	TpMuguga_01g01074	join(2220237..2220524,2220579..2220788,2220845..2221656)	Theileria parva strain Muguga	3503156
TpMuguga_01g01075	mRNA	TpMuguga_01g01075	NC_007344.1	2221768	2222754	D	TpMuguga_01g01075	join(<2221768..2221975,2222087..>2222754)	Theileria parva strain Muguga	3503014
TpMuguga_01g01076	mRNA	TpMuguga_01g01076	NC_007344.1	2223005	2223914	D	TpMuguga_01g01076	join(<2223005..2223212,2223244..>2223914)	Theileria parva strain Muguga	3503015
TpMuguga_01g01077	mRNA	TpMuguga_01g01077	NC_007344.1	2224064	2225201	D	TpMuguga_01g01077	join(2224064..2224374,2224407..2225201)	Theileria parva strain Muguga	3503016
TpMuguga_01g01078	mRNA	TpMuguga_01g01078	NC_007344.1	2225238	2226426	D	TpMuguga_01g01078	join(2225238..2225649,2225684..2226426)	Theileria parva strain Muguga	3503017
TpMuguga_01g01079	mRNA	TpMuguga_01g01079	NC_007344.1	2226482	2226977	R	TpMuguga_01g01079	complement(join(<2226482..2226562,2226592..2226977))	Theileria parva strain Muguga	3503018
TpMuguga_01g01080	mRNA	TpMuguga_01g01080	NC_007344.1	2226978	2228555	R	TpMuguga_01g01080	complement(join(2226978..2227081,2227118..2227189,2227220..2227573,2227608..2228124,2228160..2228555))	Theileria parva strain Muguga	3503019
TpMuguga_01g01081	mRNA	TpMuguga_01g01081	NC_007344.1	2228659	2230034	D	TpMuguga_01g01081	join(2228659..2229007,2229119..2230034)	Theileria parva strain Muguga	3503020
TpMuguga_01g01082	mRNA	TpMuguga_01g01082	NC_007344.1	2230035	2231308	D	TpMuguga_01g01082	join(2230035..2230427,2230507..2231308)	Theileria parva strain Muguga	3502832
TpMuguga_01g01083	mRNA	TpMuguga_01g01083	NC_007344.1	2231449	2232538	D	TpMuguga_01g01083	join(2231449..2231797,2231832..2232538)	Theileria parva strain Muguga	3502833
TpMuguga_01g01084	mRNA	TpMuguga_01g01084	NC_007344.1	2232673	2235221	D	TpMuguga_01g01084	<2232673..2235221	Theileria parva strain Muguga	3502834
TpMuguga_01g01085	mRNA	TpMuguga_01g01085	NC_007344.1	2235229	2236213	R	TpMuguga_01g01085	complement(join(2235229..2235496,2235526..2235645,2235712..2235870,2235901..2236004,2236035..2236087,2236161..>2236213))	Theileria parva strain Muguga	3502835
TpMuguga_01g01086	mRNA	TpMuguga_01g01086	NC_007344.1	2236349	2236568	D	TpMuguga_01g01086	join(<2236349..2236417,2236515..>2236568)	Theileria parva strain Muguga	86047605
TpMuguga_01g02035	mRNA	TpMuguga_01g02035	NC_007344.1	2236571	2236846	D	TpMuguga_01g02035	join(<2236571..2236682,2236809..>2236846)	Theileria parva strain Muguga	86047607
TpMuguga_01g01087	mRNA	TpMuguga_01g01087	NC_007344.1	2236887	2237630	D	TpMuguga_01g01087	join(<2236887..2237032,2237100..2237389,2237433..2237630)	Theileria parva strain Muguga	3502837
TpMuguga_01g01088	mRNA	ria1	NC_007344.1	2237799	2242015	D	TpMuguga_01g01088	join(<2237799..2239224,2239277..2239437,2239476..2239658,2239691..2239798,2239866..2239974,2240032..2240352,2240385..2240832,2240911..2241289,2241355..2241439,2241477..2241733,2241829..2241915,2241947..>2242015)	Theileria parva strain Muguga	3502772
TpMuguga_01g01089	mRNA	TpMuguga_01g01089	NC_007344.1	2242019	2242935	R	TpMuguga_01g01089	complement(join(2242019..2242619,2242718..2242935))	Theileria parva strain Muguga	3502773
TpMuguga_01g01090	mRNA	PDCD2	NC_007344.1	2243027	2244386	D	TpMuguga_01g01090	join(2243027..2243628,2243658..2243834,2243901..2244386)	Theileria parva strain Muguga	3502774
TpMuguga_01g01091	mRNA	TpMuguga_01g01091	NC_007344.1	2244548	2246511	D	TpMuguga_01g01091	2244548..2246511	Theileria parva strain Muguga	3502775
TpMuguga_01g01092	mRNA	Trip1	NC_007344.1	2246703	2248141	D	TpMuguga_01g01092	join(2246703..2246854,2246955..2247000,2247031..2247184,2247237..2247486,2247558..2247659,2247700..2247756,2247787..2248141)	Theileria parva strain Muguga	3502776
TpMuguga_01g02260	mRNA	TpMuguga_01g02260	NC_007344.1	2248243	2249942	R	TpMuguga_01g02260	complement(join(2248243..2248406,2248438..2248744,2248781..2248873,2248936..2249154,2249189..2249245,2249357..2249483,2249555..>2249942))	Theileria parva strain Muguga	3502777
TpMuguga_01g02290	mRNA	csd	NC_007344.1	2249939	2251761	R	TpMuguga_01g02290	complement(join(<2249939..2250084,2250158..2250338,2250369..2250497,2250557..2250700,2250731..2250925,2250955..2251072,2251113..2251228,2251311..2251391,2251430..2251761))	Theileria parva strain Muguga	3502665
TpMuguga_01g01095	mRNA	TpMuguga_01g01095	NC_007344.1	2251855	2253802	D	TpMuguga_01g01095	join(2251855..2252198,2252264..2252437,2252515..2253423,2253490..2253595,2253626..2253802)	Theileria parva strain Muguga	3502666
TpMuguga_01g01096	mRNA	TpMuguga_01g01096	NC_007344.1	2253827	2254717	R	TpMuguga_01g01096	complement(join(2253827..2254295,2254363..2254717))	Theileria parva strain Muguga	3502667
TpMuguga_01g01097	mRNA	KIF18B	NC_007344.1	2255042	2257608	D	TpMuguga_01g01097	join(2255042..2257357,2257447..>2257608)	Theileria parva strain Muguga	3502668
TpMuguga_01g01098	mRNA	TpMuguga_01g01098	NC_007344.1	2257663	2258730	D	TpMuguga_01g01098	join(2257663..2257761,2257795..2257853,2257936..2258016,2258084..2258118,2258155..2258422,2258490..2258561,2258634..2258730)	Theileria parva strain Muguga	3502669
TpMuguga_01g01099	mRNA	PCKR1	NC_007344.1	2258810	2259925	D	TpMuguga_01g01099	join(2258810..2258978,2259040..2259094,2259161..2259237,2259272..2259377,2259406..2259500,2259534..2259637,2259670..2259748,2259783..2259925)	Theileria parva strain Muguga	3502670
TpMuguga_01g01100	mRNA	Slc25a3	NC_007344.1	2259988	2261217	D	TpMuguga_01g01100	join(2259988..2260590,2260642..2260801,2260834..2261045,2261167..>2261217)	Theileria parva strain Muguga	3502712
TpMuguga_01g01101	mRNA	xab1	NC_007344.1	2261215	2262675	D	TpMuguga_01g01101	join(2261215..2261394,2261480..2261576,2261633..2261663,2261694..2261790,2261821..2261939,2261970..2262072,2262105..2262154,2262192..2262282,2262345..2262396,2262462..2262544,2262604..2262675)	Theileria parva strain Muguga	3502713
TpMuguga_01g01102	mRNA	PUS1	NC_007344.1	2262802	2264610	D	TpMuguga_01g01102	join(<2262802..2263028,2263165..2263599,2263655..2264195,2264262..2264404,2264529..>2264610)	Theileria parva strain Muguga	3502714
TpMuguga_01g01103	mRNA	PPIH	NC_007344.1	2264709	2265362	D	TpMuguga_01g01103	join(<2264709..2264978,2265048..>2265362)	Theileria parva strain Muguga	3502715
TpMuguga_01g01104	mRNA	Arfgap1	NC_007344.1	2265389	2267054	R	TpMuguga_01g01104	complement(2265389..2267054)	Theileria parva strain Muguga	3502716
TpMuguga_01g01105	mRNA	TpMuguga_01g01105	NC_007344.1	2267122	2269236	R	TpMuguga_01g01105	complement(2267122..2269236)	Theileria parva strain Muguga	3502717
TpMuguga_01g01106	mRNA	TpMuguga_01g01106	NC_007344.1	2269418	2270470	R	TpMuguga_01g01106	complement(join(2269418..2270208,2270245..>2270470))	Theileria parva strain Muguga	3502482
TpMuguga_01g01107	mRNA	TpMuguga_01g01107	NC_007344.1	2271282	2276474	D	TpMuguga_01g01107	join(<2271282..2271641,2271701..2271986,2272041..2274403,2274495..2274673,2274750..2274948,2275019..2275493,2275563..2276474)	Theileria parva strain Muguga	3502483
TpMuguga_01g01108	mRNA	TpMuguga_01g01108	NC_007344.1	2276503	2279737	D	TpMuguga_01g01108	2276503..2279737	Theileria parva strain Muguga	3502484
TpMuguga_01g01109	mRNA	TpMuguga_01g01109	NC_007344.1	2280156	2282422	D	TpMuguga_01g01109	join(<2280156..2280257,2280347..2280401,2280526..2282422)	Theileria parva strain Muguga	3502485
TpMuguga_01g01110	mRNA	Mgrn1	NC_007344.1	2282593	2283739	D	TpMuguga_01g01110	join(2282593..2282843,2282885..2282995,2283029..2283135,2283185..2283739)	Theileria parva strain Muguga	3502486
TpMuguga_01g01111	mRNA	TpMuguga_01g01111	NC_007344.1	2283773	2286458	R	TpMuguga_01g01111	complement(2283773..2286458)	Theileria parva strain Muguga	3502487
TpMuguga_01g01112	mRNA	TpMuguga_01g01112	NC_007344.1	2286532	2287949	D	TpMuguga_01g01112	join(2286532..2286808,2286897..2287688,2287720..2287778,2287857..2287949)	Theileria parva strain Muguga	3503336
TpMuguga_01g02075	mRNA	TpMuguga_01g02075	NC_007344.1	2287782	2289303	R	TpMuguga_01g02075	complement(2287782..2289303)	Theileria parva strain Muguga	86047611
TpMuguga_01g01113	mRNA	cct8	NC_007344.1	2289309	2291358	D	TpMuguga_01g01113	join(2289309..2290011,2290077..2291358)	Theileria parva strain Muguga	3503337
TpMuguga_01g01114	mRNA	TpMuguga_01g01114	NC_007344.1	2291413	2293555	D	TpMuguga_01g01114	join(2291413..2292165,2292196..2292964,2293011..2293118,2293176..2293555)	Theileria parva strain Muguga	3503338
TpMuguga_01g01115	mRNA	TpMuguga_01g01115	NC_007344.1	2294099	2294939	R	TpMuguga_01g01115	complement(join(<2294099..2294281,2294337..>2294939))	Theileria parva strain Muguga	3503339
TpMuguga_01g01116	mRNA	TpMuguga_01g01116	NC_007344.1	2295145	2296198	D	TpMuguga_01g01116	join(2295145..2295495,2295528..2295924,2296013..2296041,2296071..2296198)	Theileria parva strain Muguga	3503340
TpMuguga_01g02805	mRNA	TpMuguga_01g02805	NC_007344.1	2296185	2297047	R	TpMuguga_01g02805	complement(join(2296185..2296270,2296302..2296336,2296368..2296465,2296497..2296561,2296594..2296682,2296719..2297047))	Theileria parva strain Muguga	86047658
TpMuguga_01g01117	mRNA	TpMuguga_01g01117	NC_007344.1	2297146	2298607	R	TpMuguga_01g01117	complement(join(2297146..2298140,2298172..2298243,2298332..2298607))	Theileria parva strain Muguga	3503341
TpMuguga_01g01118	mRNA	TpMuguga_01g01118	NC_007344.1	2298846	2300798	R	TpMuguga_01g01118	complement(<2298846..>2300798)	Theileria parva strain Muguga	3503342
TpMuguga_01g02870	mRNA	TpMuguga_01g02870	NC_007344.1	2301614	2302581	D	TpMuguga_01g02870	join(2301614..2301656,2301688..2301795,2301825..2301897,2301930..2301959,2302026..2302121,2302218..2302581)	Theileria parva strain Muguga	86047666
TpMuguga_01g02215	mRNA	rplA	NC_007344.1	2302579	2303787	D	TpMuguga_01g02215	join(2302579..2303245,2303286..2303622,2303664..>2303787)	Theileria parva strain Muguga	3502996
TpMuguga_01g01120	mRNA	paa-1	NC_007344.1	2303829	2305380	D	TpMuguga_01g01120	join(<2303829..2304098,2304170..2304271,2304302..2304431,2304486..2305380)	Theileria parva strain Muguga	3502997
TpMuguga_01g01121	mRNA	vps16	NC_007344.1	2305648	2308495	D	TpMuguga_01g01121	2305648..2308495	Theileria parva strain Muguga	3502998
TpMuguga_01g01122	mRNA	ftsH	NC_007344.1	2308569	2311304	R	TpMuguga_01g01122	complement(join(2308569..2309646,2309697..2310206,2310238..2310393,2310513..2311304))	Theileria parva strain Muguga	3502999
TpMuguga_01g02750	mRNA	TpMuguga_01g02750	NC_007344.1	2311632	2313183	D	TpMuguga_01g02750	join(2311632..2312261,2312295..2312356,2312385..2312486,2312516..2312687,2312717..2312800,2312889..2313034,2313064..2313183)	Theileria parva strain Muguga	3503001
TpMuguga_01g01125	mRNA	gyrB	NC_007344.1	2313194	2316317	R	TpMuguga_01g01125	complement(join(2313194..2313889,2313920..2314028,2314062..2314255,2314321..2314480,2314517..2314617,2314684..2314762,2314815..2314962,2315017..2315120,2315163..>2316317))	Theileria parva strain Muguga	3502674
TpMuguga_01g02365	mRNA	TpMuguga_01g02365	NC_007344.1	2316624	2317519	D	TpMuguga_01g02365	join(2316624..2316927,2316960..2316986,2317018..2317091,2317122..2317180,2317210..2317255,2317282..2317341,2317411..2317519)	Theileria parva strain Muguga	86047628
TpMuguga_01g01126	mRNA	TpMuguga_01g01126	NC_007344.1	2317547	2319208	R	TpMuguga_01g01126	complement(<2317547..>2319208)	Theileria parva strain Muguga	3502675
TpMuguga_01g02660	mRNA	TpMuguga_01g02660	NC_007344.1	2320127	2321000	R	TpMuguga_01g02660	complement(join(2320127..2320270,2320303..2320448,2320480..2320928,2320957..>2321000))	Theileria parva strain Muguga	3502676
TpMuguga_01g02655	mRNA	TpMuguga_01g02655	NC_007344.1	2321039	2322394	R	TpMuguga_01g02655	complement(join(<2321039..2321164,2321204..2321323,2321368..2321451,2321519..>2322394))	Theileria parva strain Muguga	3502677
TpMuguga_01g01129	mRNA	TpMuguga_01g01129	NC_007344.1	2322460	2323039	R	TpMuguga_01g01129	complement(join(<2322460..2322593,2322674..2322782,2322971..>2323039))	Theileria parva strain Muguga	3502678
TpMuguga_01g01130	mRNA	pgs1	NC_007344.1	2323540	2325686	D	TpMuguga_01g01130	2323540..2325686	Theileria parva strain Muguga	3502679
TpMuguga_01g01131	mRNA	TpMuguga_01g01131	NC_007344.1	2325745	2326612	D	TpMuguga_01g01131	join(<2325745..2325928,2325967..2326041,2326073..2326143,2326190..>2326612)	Theileria parva strain Muguga	3502680
TpMuguga_01g01132	mRNA	SRCAP	NC_007344.1	2326953	2332122	D	TpMuguga_01g01132	join(<2326953..2329515,2329569..2331100,2331154..2331323,2331428..2331620,2331650..2331838,2331868..2332122)	Theileria parva strain Muguga	3503243
TpMuguga_01g01133	mRNA	pyrF	NC_007344.1	2332095	2333451	R	TpMuguga_01g01133	complement(join(2332095..2332179,2332210..2332271,2332308..2332457,2332591..2332915,2333083..2333451))	Theileria parva strain Muguga	3503244
TpMuguga_01g01134	mRNA	TpMuguga_01g01134	NC_007344.1	2333414	2336097	R	TpMuguga_01g01134	complement(<2333414..2336097)	Theileria parva strain Muguga	3503245
TpMuguga_01g01135	mRNA	TpMuguga_01g01135	NC_007344.1	2336431	2337678	R	TpMuguga_01g01135	complement(join(<2336431..2336710,2336767..2336869,2336899..2337274,2337367..2337678))	Theileria parva strain Muguga	3503246
TpMuguga_01g01136	mRNA	meigo	NC_007344.1	2337660	2339069	D	TpMuguga_01g01136	2337660..2339069	Theileria parva strain Muguga	3503247
TpMuguga_01g01137	mRNA	DSK2	NC_007344.1	2339171	2340719	R	TpMuguga_01g01137	complement(join(2339171..2339198,2339228..2339431,2339462..2339627,2339717..2339877,2339950..2340015,2340046..2340210,2340240..2340719))	Theileria parva strain Muguga	3503248
TpMuguga_01g01138	mRNA	PAS1	NC_007344.1	2340720	2342038	R	TpMuguga_01g01138	complement(join(2340720..2340787,2340819..2341115,2341147..2341221,2341289..2341378,2341430..2341576,2341611..2341680,2341767..2341819,2341901..2341951,2341991..>2342038))	Theileria parva strain Muguga	3503507
TpMuguga_01g01139	mRNA	TpMuguga_01g01139	NC_007344.1	2342040	2344852	R	TpMuguga_01g01139	complement(join(<2342040..2342698,2342843..2343589,2343708..2344065,2344098..2344852))	Theileria parva strain Muguga	3503508
TpMuguga_01g01140	mRNA	PTP4A3	NC_007344.1	2344960	2346778	R	TpMuguga_01g01140	complement(join(2344960..2345799,2345904..2346313,2346476..2346778))	Theileria parva strain Muguga	3503509
TpMuguga_01g01141	mRNA	ACYP1	NC_007344.1	2346831	2347403	D	TpMuguga_01g01141	2346831..2347403	Theileria parva strain Muguga	3503510
TpMuguga_01g01142	mRNA	TpMuguga_01g01142	NC_007344.1	2347466	2349183	R	TpMuguga_01g01142	complement(join(2347466..2347653,2347734..2347853,2347943..2348059,2348143..2348235,2348298..2349183))	Theileria parva strain Muguga	3503511
TpMuguga_01g01143	mRNA	INP53	NC_007344.1	2349312	2350975	D	TpMuguga_01g01143	join(2349312..2350495,2350595..2350975)	Theileria parva strain Muguga	3503512
TpMuguga_01g01144	mRNA	TpMuguga_01g01144	NC_007344.1	2351355	2352056	D	TpMuguga_01g01144	<2351355..>2352056	Theileria parva strain Muguga	3503513
TpMuguga_01g01145	mRNA	TpMuguga_01g01145	NC_007344.1	2352423	2353210	D	TpMuguga_01g01145	join(<2352423..2352498,2352555..>2353210)	Theileria parva strain Muguga	3503451
TpMuguga_01g02705	mRNA	TpMuguga_01g02705	NC_007344.1	2353280	2353821	R	TpMuguga_01g02705	complement(join(2353280..2353507,2353539..2353667,2353766..2353821))	Theileria parva strain Muguga	86047651
TpMuguga_01g02700	mRNA	TpMuguga_01g02700	NC_007344.1	2353822	2355553	R	TpMuguga_01g02700	complement(join(2353822..2353920,2353952..2354011,2354095..2354195,2354227..2354266,2354300..2354328,2354401..2354503,2354533..2354575,2354677..2354746,2354780..2354829,2354859..2354935,2355004..2355127,2355237..2355553))	Theileria parva strain Muguga	3503453
TpMuguga_01g01148	mRNA	Ddx28	NC_007344.1	2355617	2358426	R	TpMuguga_01g01148	complement(join(2355617..2355707,2355738..2355855,2355969..2356040,2356072..2356164,2356202..2356361,2356457..2356704,2356774..2357209,2357305..2358426))	Theileria parva strain Muguga	3503454
TpMuguga_01g01149	mRNA	INP53	NC_007344.1	2358219	2362734	D	TpMuguga_01g01149	join(2358219..2358453,2358543..2359836,2359985..2361424,2361568..2361771,2361866..2361943,2362063..2362390,2362562..2362734)	Theileria parva strain Muguga	3503455
TpMuguga_01g01150	mRNA	Dnpep	NC_007344.1	2362769	2365039	R	TpMuguga_01g01150	complement(join(2362769..2362837,2362875..2363389,2363528..2363700,2363788..2363876,2363995..2364104,2364141..2364231,2364353..2364465,2364544..2364620,2364743..2365039))	Theileria parva strain Muguga	3503456
TpMuguga_01g01151	mRNA	cnrB	NC_007344.1	2365035	2367927	D	TpMuguga_01g01151	join(<2365035..2365089,2365168..2365310,2365391..2365618,2365730..2366597,2366678..2366754,2366864..2367022,2367090..2367164,2367244..2367340,2367441..2367525,2367609..>2367927)	Theileria parva strain Muguga	3503275
TpMuguga_01g01152	mRNA	Dnajb14	NC_007344.1	2368131	2369716	D	TpMuguga_01g01152	join(2368131..2368362,2368395..2368545,2368634..2368773,2368903..2369174,2369287..2369716)	Theileria parva strain Muguga	3503276
TpMuguga_01g01153	mRNA	TpMuguga_01g01153	NC_007344.1	2369604	2370769	R	TpMuguga_01g01153	complement(join(2369604..2369826,2369887..2370033,2370128..2370182,2370243..2370326,2370423..2370568,2370612..2370769))	Theileria parva strain Muguga	3503277
TpMuguga_01g02415	mRNA	TpMuguga_01g02415	NC_007344.1	2370714	2373002	R	TpMuguga_01g02415	complement(join(<2370714..2370830,2370901..2371119,2371200..2371270,2371302..2371410,2371479..2371550,2371612..2371783,2371888..2371989,2372021..2372106,2372164..2372240,2372357..2372430,2372461..2373002))	Theileria parva strain Muguga	3503278
TpMuguga_01g01156	mRNA	SODB	NC_007344.1	2372980	2374286	R	TpMuguga_01g01156	complement(join(2372980..2373079,2373222..2373313,2373457..2373733,2373830..2373871,2373955..2374286))	Theileria parva strain Muguga	3503168
TpMuguga_01g01157	mRNA	DDHD1	NC_007344.1	2374289	2376791	D	TpMuguga_01g01157	join(2374289..2374749,2374815..2374974,2375044..2375145,2375233..2375337,2375398..2375586,2375667..2375796,2375871..2375900,2375931..2376124,2376216..2376482,2376617..2376791)	Theileria parva strain Muguga	3503169
TpMuguga_01g01158	mRNA	TpMuguga_01g01158	NC_007344.1	2376797	2380126	D	TpMuguga_01g01158	join(2376797..2376968,2377024..2377159,2377262..2377698,2377806..2378051,2378159..2378277,2378369..2378527,2378599..2378851,2378947..2379015,2379100..2379293,2379400..2379472,2379563..2379695,2379834..2380126)	Theileria parva strain Muguga	3503170
TpMuguga_01g01159	mRNA	TpMuguga_01g01159	NC_007344.1	2380162	2382174	R	TpMuguga_01g01159	complement(join(2380162..2381526,2381633..2381817,2381928..2382174))	Theileria parva strain Muguga	3503171
TpMuguga_01g01160	mRNA	TpMuguga_01g01160	NC_007344.1	2382229	2383936	R	TpMuguga_01g01160	complement(join(<2382229..2383064,2383141..>2383936))	Theileria parva strain Muguga	3502960
TpMuguga_01g01161	mRNA	TpMuguga_01g01161	NC_007344.1	2384578	2390564	D	TpMuguga_01g01161	join(<2384578..2384683,2384767..2386911,2386975..>2390564)	Theileria parva strain Muguga	3502961
TpMuguga_01g01162	mRNA	TpMuguga_01g01162	NC_007344.1	2390702	2392280	R	TpMuguga_01g01162	complement(join(2390702..2390938,2391048..2391299,2391333..2391397,2391456..2391571,2391674..2391813,2391899..2392070,2392102..2392280))	Theileria parva strain Muguga	3502962
TpMuguga_01g01163	mRNA	TpMuguga_01g01163	NC_007344.1	2392281	2394907	R	TpMuguga_01g01163	complement(join(2392281..2392555,2392719..2392944,2393014..2393216,2393337..2393532,2393654..2394058,2394245..2394907))	Theileria parva strain Muguga	3502963
TpMuguga_01g01164	mRNA	TpMuguga_01g01164	NC_007344.1	2395536	2396936	R	TpMuguga_01g01164	complement(2395536..2396936)	Theileria parva strain Muguga	3502964
TpMuguga_01g01165	mRNA	TpMuguga_01g01165	NC_007344.1	2397012	2399659	D	TpMuguga_01g01165	join(<2397012..2397425,2397522..2397806,2397905..2398036,2398100..2398177,2398236..2398403,2398483..2398919,2399065..2399428,2399465..>2399659)	Theileria parva strain Muguga	3502965
TpMuguga_01g01166	mRNA	bbp	NC_007344.1	2399725	2401579	R	TpMuguga_01g01166	complement(join(2399725..2400138,2400216..2400332,2400432..2400845,2400928..2401579))	Theileria parva strain Muguga	3502909
TpMuguga_01g01167	mRNA	Eif2ak3	NC_007344.1	2401665	2407070	D	TpMuguga_01g01167	join(2401665..2401783,2401818..2405766,2405914..2406195,2406361..2406613,2406738..>2407070)	Theileria parva strain Muguga	3502910
TpMuguga_01g01168	mRNA	TpMuguga_01g01168	NC_007344.1	2407098	2408252	R	TpMuguga_01g01168	complement(join(2407098..2407327,2407506..2407696,2407765..2407830,2407861..2407926,2408058..2408252))	Theileria parva strain Muguga	3502911
TpMuguga_01g01169	mRNA	TpMuguga_01g01169	NC_007344.1	2408296	2408709	D	TpMuguga_01g01169	2408296..2408709	Theileria parva strain Muguga	3502912
TpMuguga_01g01170	mRNA	TpMuguga_01g01170	NC_007344.1	2409225	2410358	D	TpMuguga_01g01170	2409225..2410358	Theileria parva strain Muguga	3502913
TpMuguga_01g02785	mRNA	EPT1	NC_007344.1	2410495	2412634	R	TpMuguga_01g02785	complement(join(2410495..2410928,2411035..2411105,2411176..2411333,2411450..2411566,2411653..2411811,2411976..2412125,2412221..2412634))	Theileria parva strain Muguga	3502914
TpMuguga_01g01173	mRNA	SWC4	NC_007344.1	2412705	2415185	D	TpMuguga_01g01173	join(2412705..2412905,2413001..2413339,2413487..2414142,2414211..2415185)	Theileria parva strain Muguga	3502688
TpMuguga_01g01174	mRNA	TpMuguga_01g01174	NC_007344.1	2415186	2416268	D	TpMuguga_01g01174	join(2415186..2415873,2415987..2416268)	Theileria parva strain Muguga	3502689
TpMuguga_01g01175	mRNA	TpMuguga_01g01175	NC_007344.1	2416482	2433461	R	TpMuguga_01g01175	complement(join(<2416482..2416661,2416823..2423998,2424117..2433461))	Theileria parva strain Muguga	3502690
TpMuguga_01g02065	mRNA	TpMuguga_01g02065	NC_007344.1	2433993	2434779	R	TpMuguga_01g02065	complement(2433993..2434779)	Theileria parva strain Muguga	86047610
TpMuguga_01g02085	mRNA	TpMuguga_01g02085	NC_007344.1	2434867	2435928	D	TpMuguga_01g02085	join(2434867..2435355,2435386..2435646,2435741..2435788,2435819..>2435928)	Theileria parva strain Muguga	3502546
TpMuguga_01g02090	mRNA	TpMuguga_01g02090	NC_007344.1	2435933	2438168	D	TpMuguga_01g02090	join(<2435933..2437322,2437487..2437662,2437805..2437859,2437892..2437945,2438023..2438168)	Theileria parva strain Muguga	3502547
TpMuguga_01g01180	mRNA	TpMuguga_01g01180	NC_007344.1	2438075	2439770	R	TpMuguga_01g01180	complement(join(2438075..2438430,2438524..2439071,2439194..2439351,2439385..2439642,2439673..2439770))	Theileria parva strain Muguga	3502548
TpMuguga_01g01181	mRNA	TpMuguga_01g01181	NC_007344.1	2439876	2440682	D	TpMuguga_01g01181	join(2439876..2440080,2440209..2440682)	Theileria parva strain Muguga	3502549
TpMuguga_01g01182	mRNA	TpMuguga_01g01182	NC_007344.1	2440771	2442474	D	TpMuguga_01g01182	join(2440771..2441227,2441344..2441471,2441743..2442474)	Theileria parva strain Muguga	3502550
TpMuguga_01g01183	mRNA	PRPF18	NC_007344.1	2442651	2444749	D	TpMuguga_01g01183	join(2442651..2442750,2442792..2442916,2442951..2443011,2443146..2443227,2443257..2443340,2443372..2443409,2443711..2443771,2443862..2444133,2444392..2444749)	Theileria parva strain Muguga	3502551
TpMuguga_01g01184	mRNA	Naa15	NC_007344.1	2444899	2448259	D	TpMuguga_01g01184	join(<2444899..2444985,2445173..>2448259)	Theileria parva strain Muguga	3502470
TpMuguga_01g02645	mRNA	TpMuguga_01g02645	NC_007344.1	2448921	2451785	D	TpMuguga_01g02645	join(2448921..2451203,2451337..2451489,2451615..2451785)	Theileria parva strain Muguga	3502472
TpMuguga_01g01187	mRNA	TpMuguga_01g01187	NC_007344.1	2452500	2455184	D	TpMuguga_01g01187	2452500..2455184	Theileria parva strain Muguga	3502473
TpMuguga_01g01188	mRNA	infB	NC_007344.1	2455280	2457988	D	TpMuguga_01g01188	join(2455280..2455588,2455617..2455732,2455786..2455888,2455918..2455999,2456226..2457184,2457216..2457355,2457385..2457988)	Theileria parva strain Muguga	3502474
TpMuguga_01g01189	mRNA	TpMuguga_01g01189	NC_007344.1	2458540	2459082	D	TpMuguga_01g01189	join(<2458540..2458590,2458633..2458799,2458859..2459035,2459070..>2459082)	Theileria parva strain Muguga	3502475
TpMuguga_01g01190	mRNA	TpMuguga_01g01190	NC_007344.1	2459190	2460453	R	TpMuguga_01g01190	complement(join(2459190..2459935,2459967..2460184,2460276..2460453))	Theileria parva strain Muguga	3502476
TpMuguga_01g01191	mRNA	TpMuguga_01g01191	NC_007344.1	2460390	2463636	D	TpMuguga_01g01191	join(2460390..2460653,2460737..2460803,2460841..2460936,2460969..2461021,2461228..2461270,2461299..2461466,2461492..2461613,2461851..2461939,2461995..2462144,2462229..2462647,2463487..2463636)	Theileria parva strain Muguga	3502519
TpMuguga_01g01192	mRNA	lplA	NC_007344.1	2463785	2465843	D	TpMuguga_01g01192	join(2463785..2464248,2464558..2464657,2464759..2464811,2464844..2464892,2464995..2465065,2465164..2465238,2465268..2465324,2465361..2465432,2465462..2465729,2465762..2465843)	Theileria parva strain Muguga	3502521
TpMuguga_01g01193	mRNA	TpMuguga_01g01193	NC_007344.1	2466484	2467742	R	TpMuguga_01g01193	complement(join(<2466484..2466663,2466695..2466769,2466857..2466949,2467076..2467231,2467501..2467574,2467640..>2467742))	Theileria parva strain Muguga	3502522
TpMuguga_01g01194	mRNA	TpMuguga_01g01194	NC_007344.1	2467820	2469838	R	TpMuguga_01g01194	complement(join(2467820..2468029,2468059..2468122,2468369..2468509,2468790..2468863,2468894..2468945,2469144..2469394,2469514..2469838))	Theileria parva strain Muguga	3502523
TpMuguga_01g01195	mRNA	TpMuguga_01g01195	NC_007344.1	2469725	2471027	D	TpMuguga_01g01195	join(2469725..2469987,2470068..2470194,2470415..2470585,2470768..2471027)	Theileria parva strain Muguga	3502453
TpMuguga_01g01196	mRNA	TpMuguga_01g01196	NC_007344.1	2471150	2472899	R	TpMuguga_01g01196	complement(join(<2471150..2471340,2471427..2471769,2472091..2472262,2472482..2472618,2472692..2472724,2472804..>2472899))	Theileria parva strain Muguga	3502454
TpMuguga_01g01197	mRNA	TpMuguga_01g01197	NC_007344.1	2472956	2474008	D	TpMuguga_01g01197	2472956..2474008	Theileria parva strain Muguga	3502455
TpMuguga_01g01198	mRNA	TpMuguga_01g01198	NC_007344.1	2474465	2475914	D	TpMuguga_01g01198	2474465..2475914	Theileria parva strain Muguga	3502456
TpMuguga_01g01199	mRNA	sph	NC_007344.1	2475948	2477884	D	TpMuguga_01g01199	join(2475948..2476616,2476979..2477467,2477664..2477884)	Theileria parva strain Muguga	3502457
TpMuguga_01g01200	mRNA	Pde7b	NC_007344.1	2478911	2483394	R	TpMuguga_01g01200	complement(join(2478911..2479155,2479247..2479551,2479874..2480510,2480770..2481209,2481323..2481421,2481651..2481820,2482043..2482188,2482466..2482702,2482943..2483394))	Theileria parva strain Muguga	3502458
TpMuguga_01g01201	mRNA	CELF1	NC_007344.1	2483895	2485858	D	TpMuguga_01g01201	join(2483895..2484510,2484631..2484792,2485110..2485858)	Theileria parva strain Muguga	3502376
TpMuguga_01g01202	mRNA	CWC22	NC_007344.1	2486774	2488712	R	TpMuguga_01g01202	complement(2486774..2488712)	Theileria parva strain Muguga	3502377
TpMuguga_01g01203	mRNA	TpMuguga_01g01203	NC_007344.1	2488821	2489528	R	TpMuguga_01g01203	complement(join(2488821..2489052,2489124..2489528))	Theileria parva strain Muguga	3502378
TpMuguga_01g01204	mRNA	YPT31	NC_007344.1	2489390	2490852	D	TpMuguga_01g01204	join(2489390..2489856,2489894..2490033,2490192..2490852)	Theileria parva strain Muguga	3502379
TpMuguga_01g02320	mRNA	TpMuguga_01g02320	NC_007344.1	2491097	2492707	D	TpMuguga_01g02320	join(2491097..2491536,2491613..2491693,2491771..2492251,2492529..2492661,2492687..>2492707)	Theileria parva strain Muguga	3502380
TpMuguga_01g01207	mRNA	srp2	NC_007344.1	2492953	2495189	R	TpMuguga_01g01207	complement(join(<2492953..2493058,2493503..2495189))	Theileria parva strain Muguga	3502382
TpMuguga_01g01208	mRNA	TpMuguga_01g01208	NC_007344.1	2495315	2496702	R	TpMuguga_01g01208	complement(join(2495315..2495493,2495927..2496181,2496303..2496702))	Theileria parva strain Muguga	3502383
TpMuguga_01g01209	mRNA	TpMuguga_01g01209	NC_007344.1	2496729	2498778	R	TpMuguga_01g01209	complement(join(<2496729..2497073,2497185..2497288,2497417..2497659,2497790..2498778))	Theileria parva strain Muguga	3502384
TpMuguga_01g01210	mRNA	TpMuguga_01g01210	NC_007344.1	2497856	2499491	D	TpMuguga_01g01210	join(2497856..2498282,2498394..2498690,2498903..2499076,2499119..2499215,2499245..2499308,2499341..2499491)	Theileria parva strain Muguga	3502385
TpMuguga_01g01211	mRNA	TpMuguga_01g01211	NC_007344.1	2499468	2500759	D	TpMuguga_01g01211	join(2499468..2499728,2499803..2499907,2500011..2500098,2500201..2500298,2500336..2500483,2500525..2500618,2500649..2500759)	Theileria parva strain Muguga	3502386
TpMuguga_01g01212	mRNA	metG	NC_007344.1	2500743	2502496	R	TpMuguga_01g01212	complement(2500743..2502496)	Theileria parva strain Muguga	3502387
TpMuguga_01g01213	mRNA	TpMuguga_01g01213	NC_007344.1	2502572	2504987	D	TpMuguga_01g01213	join(2502572..2503348,2503414..2503662,2503750..2503851,2503901..2504179,2504230..2504324,2504359..2504459,2504591..2504987)	Theileria parva strain Muguga	3502388
TpMuguga_01g01214	mRNA	TpMuguga_01g01214	NC_007344.1	2504988	2506158	D	TpMuguga_01g01214	join(2504988..2505263,2505296..2505839,2505871..2506158)	Theileria parva strain Muguga	3502389
TpMuguga_01g01215	mRNA	TpMuguga_01g01215	NC_007344.1	2506396	2507029	R	TpMuguga_01g01215	complement(join(2506396..2506568,2506601..2506678,2506711..2506744,2506813..2507029))	Theileria parva strain Muguga	3502391
TpMuguga_01g01216	mRNA	TpMuguga_01g01216	NC_007344.1	2507623	2508520	D	TpMuguga_01g01216	join(<2507623..2507694,2507728..2507832,2507868..2508011,2508041..2508234,2508266..2508362,2508410..>2508520)	Theileria parva strain Muguga	3502394
TpMuguga_01g01217	mRNA	TpMuguga_01g01217	NC_007344.1	2508553	2509474	R	TpMuguga_01g01217	complement(2508553..2509474)	Theileria parva strain Muguga	3502395
TpMuguga_01g01218	mRNA	TpMuguga_01g01218	NC_007344.1	2509744	2510437	R	TpMuguga_01g01218	complement(2509744..2510437)	Theileria parva strain Muguga	3502396
TpMuguga_01g01219	mRNA	psd	NC_007344.1	2510895	2511665	D	TpMuguga_01g01219	2510895..2511665	Theileria parva strain Muguga	3502397
TpMuguga_01g01220	mRNA	TpMuguga_01g01220	NC_007344.1	2511727	2513099	R	TpMuguga_01g01220	complement(2511727..2513099)	Theileria parva strain Muguga	3502398
TpMuguga_01g01221	mRNA	TpMuguga_01g01221	NC_007344.1	2514060	2519510	D	TpMuguga_01g01221	<2514060..>2519510	Theileria parva strain Muguga	3502399
TpMuguga_01g01222	mRNA	TpMuguga_01g01222	NC_007344.1	2519570	2522182	D	TpMuguga_01g01222	<2519570..>2522182	Theileria parva strain Muguga	3502400
TpMuguga_01g01223	mRNA	TpMuguga_01g01223	NC_007344.1	2524335	2528593	D	TpMuguga_01g01223	2524335..>2528593	Theileria parva strain Muguga	3502401
TpMuguga_01g01224	mRNA	TpMuguga_01g01224	NC_007344.1	2528753	2529823	D	TpMuguga_01g01224	2528753..>2529823	Theileria parva strain Muguga	3502402
TpMuguga_01g01225	mRNA	TpMuguga_01g01225	NC_007344.1	2531155	2532825	D	TpMuguga_01g01225	join(2531155..2532601,2532696..2532825)	Theileria parva strain Muguga	3502403
TpMuguga_01g01226	mRNA	TpMuguga_01g01226	NC_007344.1	2532909	2533997	D	TpMuguga_01g01226	<2532909..>2533997	Theileria parva strain Muguga	3502404
TpMuguga_01g01227	mRNA	TpMuguga_01g01227	NC_007344.1	2534348	2537073	D	TpMuguga_01g01227	<2534348..2537073	Theileria parva strain Muguga	3502405
TpMuguga_02g00001	mRNA	TpMuguga_02g00001	NC_007345.1	3020	4516	R	TpMuguga_02g00001	complement(<3020..>4516)	Theileria parva strain Muguga	3501606
TpMuguga_02g00002	mRNA	TpMuguga_02g00002	NC_007345.1	4946	7069	R	TpMuguga_02g00002	complement(<4946..>7069)	Theileria parva strain Muguga	3501607
TpMuguga_02g00003	mRNA	TpMuguga_02g00003	NC_007345.1	7873	8742	R	TpMuguga_02g00003	complement(7873..8742)	Theileria parva strain Muguga	3501608
TpMuguga_02g02590	mRNA	TpMuguga_02g02590	NC_007345.1	8543	9570	D	TpMuguga_02g02590	join(8543..8672,8984..9570)	Theileria parva strain Muguga	86047732
TpMuguga_02g00004	mRNA	TpMuguga_02g00004	NC_007345.1	8970	10745	R	TpMuguga_02g00004	complement(<8970..>10745)	Theileria parva strain Muguga	3501579
TpMuguga_02g00005	mRNA	TpMuguga_02g00005	NC_007345.1	10973	12685	R	TpMuguga_02g00005	complement(<10973..>12685)	Theileria parva strain Muguga	3501580
TpMuguga_02g00006	mRNA	TpMuguga_02g00006	NC_007345.1	12913	14700	R	TpMuguga_02g00006	complement(<12913..>14700)	Theileria parva strain Muguga	3501581
TpMuguga_02g00007	mRNA	TpMuguga_02g00007	NC_007345.1	14928	16475	R	TpMuguga_02g00007	complement(<14928..>16475)	Theileria parva strain Muguga	3501582
TpMuguga_02g00008	mRNA	TpMuguga_02g00008	NC_007345.1	16689	17295	R	TpMuguga_02g00008	complement(<16689..17295)	Theileria parva strain Muguga	3501583
TpMuguga_02g00009	mRNA	TpMuguga_02g00009	NC_007345.1	17295	18305	R	TpMuguga_02g00009	complement(<17295..>18305)	Theileria parva strain Muguga	3501584
TpMuguga_02g00010	mRNA	TpMuguga_02g00010	NC_007345.1	18548	19951	R	TpMuguga_02g00010	complement(18548..>19951)	Theileria parva strain Muguga	3501585
TpMuguga_02g00011	mRNA	TpMuguga_02g00011	NC_007345.1	20254	21726	R	TpMuguga_02g00011	complement(<20254..>21726)	Theileria parva strain Muguga	3501586
TpMuguga_02g00012	mRNA	TpMuguga_02g00012	NC_007345.1	21998	24542	R	TpMuguga_02g00012	complement(21998..>24542)	Theileria parva strain Muguga	3501776
TpMuguga_02g00013	mRNA	TpMuguga_02g00013	NC_007345.1	25386	26915	R	TpMuguga_02g00013	complement(25386..26915)	Theileria parva strain Muguga	3501777
TpMuguga_02g02555	mRNA	TpMuguga_02g02555	NC_007345.1	27084	27606	R	TpMuguga_02g02555	complement(27084..27606)	Theileria parva strain Muguga	86047730
TpMuguga_02g02055	mRNA	TpMuguga_02g02055	NC_007345.1	29014	32283	R	TpMuguga_02g02055	complement(join(29014..30818,30864..32283))	Theileria parva strain Muguga	3501779
TpMuguga_02g00016	mRNA	abcC6	NC_007345.1	33352	37947	D	TpMuguga_02g00016	<33352..>37947	Theileria parva strain Muguga	3501780
TpMuguga_02g00017	mRNA	abcC6	NC_007345.1	38951	43549	D	TpMuguga_02g00017	<38951..>43549	Theileria parva strain Muguga	3501781
TpMuguga_02g00018	mRNA	TpMuguga_02g00018	NC_007345.1	44323	46904	R	TpMuguga_02g00018	complement(join(<44323..46316,46417..46904))	Theileria parva strain Muguga	3501782
TpMuguga_02g00019	mRNA	TpMuguga_02g00019	NC_007345.1	47435	52807	D	TpMuguga_02g00019	<47435..>52807	Theileria parva strain Muguga	3501783
TpMuguga_02g00020	mRNA	TpMuguga_02g00020	NC_007345.1	52884	55278	R	TpMuguga_02g00020	complement(52884..55278)	Theileria parva strain Muguga	3501784
TpMuguga_02g00021	mRNA	TpMuguga_02g00021	NC_007345.1	55301	56772	R	TpMuguga_02g00021	complement(join(55301..55705,55743..56338,56415..56552,56596..56772))	Theileria parva strain Muguga	3502204
TpMuguga_02g00022	mRNA	TpMuguga_02g00022	NC_007345.1	56790	58440	D	TpMuguga_02g00022	join(56790..56978,57104..57223,57373..57740,57772..57927,57993..58125,58197..58440)	Theileria parva strain Muguga	3502205
TpMuguga_02g02250	mRNA	TpMuguga_02g02250	NC_007345.1	58460	63324	D	TpMuguga_02g02250	join(58460..60502,60629..60722,60798..60895,61010..61532,61675..62024,62202..62298,62411..62754,62847..62970,63042..63324)	Theileria parva strain Muguga	3502207
TpMuguga_02g00025	mRNA	UPL6	NC_007345.1	63326	67244	D	TpMuguga_02g00025	join(63326..65178,65368..66783,66946..67244)	Theileria parva strain Muguga	3502208
TpMuguga_02g02325	mRNA	TpMuguga_02g02325	NC_007345.1	67265	68185	R	TpMuguga_02g02325	complement(67265..68185)	Theileria parva strain Muguga	86047708
TpMuguga_02g00026	mRNA	TpMuguga_02g00026	NC_007345.1	68368	69759	R	TpMuguga_02g00026	complement(join(<68368..68444,68477..69244,69382..69759))	Theileria parva strain Muguga	3502209
TpMuguga_02g02595	mRNA	TpMuguga_02g02595	NC_007345.1	69751	71856	D	TpMuguga_02g02595	join(69751..69970,70083..70329,70442..70648,70782..70827,70858..70975,71100..71271,71402..71571,71741..71856)	Theileria parva strain Muguga	3501672
TpMuguga_02g02355	mRNA	TpMuguga_02g02355	NC_007345.1	71848	76905	D	TpMuguga_02g02355	join(<71848..72588,72844..>76905)	Theileria parva strain Muguga	3501674
TpMuguga_02g00030	mRNA	TpMuguga_02g00030	NC_007345.1	77014	78111	R	TpMuguga_02g00030	complement(<77014..>78111)	Theileria parva strain Muguga	3501675
TpMuguga_02g00031	mRNA	TpMuguga_02g00031	NC_007345.1	78429	80359	R	TpMuguga_02g00031	complement(join(<78429..78505,79573..>80359))	Theileria parva strain Muguga	3501676
TpMuguga_02g00032	mRNA	TpMuguga_02g00032	NC_007345.1	80536	82473	R	TpMuguga_02g00032	complement(<80536..>82473)	Theileria parva strain Muguga	3501677
TpMuguga_02g00033	mRNA	TpMuguga_02g00033	NC_007345.1	82595	86745	R	TpMuguga_02g00033	complement(join(82595..82665,82835..83098,83216..83320,83487..83609,83788..83921,84052..84235,84377..84511,84776..85688,85797..86745))	Theileria parva strain Muguga	3501678
TpMuguga_02g00034	mRNA	atp6v1c1a	NC_007345.1	86769	88443	D	TpMuguga_02g00034	join(86769..87623,87796..88190,88327..88443)	Theileria parva strain Muguga	3501614
TpMuguga_02g00035	mRNA	trx1	NC_007345.1	88444	89266	D	TpMuguga_02g00035	join(88444..88905,89194..89266)	Theileria parva strain Muguga	3501615
TpMuguga_02g00036	mRNA	TpMuguga_02g00036	NC_007345.1	89267	90541	D	TpMuguga_02g00036	join(89267..89476,89546..89638,89828..89928,90109..90176,90224..90541)	Theileria parva strain Muguga	3501616
TpMuguga_02g00037	mRNA	TpMuguga_02g00037	NC_007345.1	90552	92299	R	TpMuguga_02g00037	complement(90552..>92299)	Theileria parva strain Muguga	3501617
TpMuguga_02g00038	mRNA	TpMuguga_02g00038	NC_007345.1	92801	94877	R	TpMuguga_02g00038	complement(92801..94877)	Theileria parva strain Muguga	3501618
TpMuguga_02g00039	mRNA	HDAC1	NC_007345.1	94878	97491	R	TpMuguga_02g00039	complement(join(94878..96876,97038..97491))	Theileria parva strain Muguga	3501619
TpMuguga_02g00040	mRNA	Pars2	NC_007345.1	97526	99706	D	TpMuguga_02g00040	join(97526..97595,97681..97728,97886..98571,98785..99016,99103..99706)	Theileria parva strain Muguga	3501620
TpMuguga_02g02485	mRNA	TpMuguga_02g02485	NC_007345.1	99710	101536	D	TpMuguga_02g02485	join(99710..99910,100194..101143,101330..101536)	Theileria parva strain Muguga	3502081
TpMuguga_02g02060	mRNA	PPX1	NC_007345.1	101702	103011	D	TpMuguga_02g02060	join(101702..102008,102105..103011)	Theileria parva strain Muguga	3502082
TpMuguga_02g00043	mRNA	TpMuguga_02g00043	NC_007345.1	103340	105231	D	TpMuguga_02g00043	<103340..105231	Theileria parva strain Muguga	3502083
TpMuguga_02g00044	mRNA	CSE4	NC_007345.1	105375	107201	R	TpMuguga_02g00044	complement(join(105375..106596,106768..106925,107122..107201))	Theileria parva strain Muguga	3502084
TpMuguga_02g00045	mRNA	TpMuguga_02g00045	NC_007345.1	107265	108801	D	TpMuguga_02g00045	join(107265..107949,108099..108382,108615..108801)	Theileria parva strain Muguga	3502085
TpMuguga_02g00046	mRNA	aatB	NC_007345.1	108903	110932	D	TpMuguga_02g00046	join(108903..109294,109459..109702,109797..110216,110363..110932)	Theileria parva strain Muguga	3502086
TpMuguga_02g00047	mRNA	TpMuguga_02g00047	NC_007345.1	110934	112180	D	TpMuguga_02g00047	join(110934..111660,111735..112180)	Theileria parva strain Muguga	3502087
TpMuguga_02g00048	mRNA	cypB	NC_007345.1	112309	113282	R	TpMuguga_02g00048	complement(join(112309..112522,112601..112718,112916..113282))	Theileria parva strain Muguga	3501804
TpMuguga_02g00049	mRNA	TpMuguga_02g00049	NC_007345.1	113652	115779	R	TpMuguga_02g00049	complement(113652..115779)	Theileria parva strain Muguga	3501805
TpMuguga_02g00050	mRNA	NTF2	NC_007345.1	116062	117101	D	TpMuguga_02g00050	join(116062..116264,116423..116598,116766..116846,117009..117101)	Theileria parva strain Muguga	3501806
TpMuguga_02g02265	mRNA	RON4	NC_007345.1	117210	122968	D	TpMuguga_02g02265	join(117210..117555,117648..117680,117868..118161,118288..119364,119505..120380,120573..121015,121133..122968)	Theileria parva strain Muguga	3501807
TpMuguga_02g00053	mRNA	TpMuguga_02g00053	NC_007345.1	123000	124924	R	TpMuguga_02g00053	complement(123000..>124924)	Theileria parva strain Muguga	3501809
TpMuguga_02g00054	mRNA	FAB1D	NC_007345.1	125147	126689	R	TpMuguga_02g00054	complement(join(125147..125704,125767..>126689))	Theileria parva strain Muguga	3501810
TpMuguga_02g00055	mRNA	TpMuguga_02g00055	NC_007345.1	127487	130405	R	TpMuguga_02g00055	complement(join(<127487..129630,129799..>130405))	Theileria parva strain Muguga	3502032
TpMuguga_02g00056	mRNA	TpMuguga_02g00056	NC_007345.1	130422	132081	D	TpMuguga_02g00056	join(130422..130770,130889..131030,131151..132081)	Theileria parva strain Muguga	3502033
TpMuguga_02g00057	mRNA	TpMuguga_02g00057	NC_007345.1	132702	135158	D	TpMuguga_02g00057	join(132702..132961,132992..133159,133305..133352,133385..133456,133535..133684,133739..133912,133975..134061,134174..134248,134353..134423,134524..134621,134651..134865,134982..135047,135079..135158)	Theileria parva strain Muguga	3502034
TpMuguga_02g00058	mRNA	TpMuguga_02g00058	NC_007345.1	135281	136695	R	TpMuguga_02g00058	complement(135281..136695)	Theileria parva strain Muguga	3502035
TpMuguga_02g00059	mRNA	SPATA5	NC_007345.1	136756	139992	D	TpMuguga_02g00059	join(136756..138039,138142..139059,139095..139190,139276..139731,139836..139992)	Theileria parva strain Muguga	3502036
TpMuguga_02g00060	mRNA	TpMuguga_02g00060	NC_007345.1	140040	142405	D	TpMuguga_02g00060	join(140040..141494,141568..141769,141800..141883,141965..142035,142111..142179,142209..142405)	Theileria parva strain Muguga	3501540
TpMuguga_02g00061	mRNA	PPA1	NC_007345.1	142437	143602	R	TpMuguga_02g00061	complement(join(142437..143200,143310..143602))	Theileria parva strain Muguga	3501541
TpMuguga_02g00062	mRNA	TpMuguga_02g00062	NC_007345.1	143783	146909	D	TpMuguga_02g00062	join(143783..146616,146686..146909)	Theileria parva strain Muguga	3501542
TpMuguga_02g00063	mRNA	TpMuguga_02g00063	NC_007345.1	146999	148806	D	TpMuguga_02g00063	join(146999..147209,147245..147458,147630..148806)	Theileria parva strain Muguga	3501543
TpMuguga_02g00064	mRNA	Rps15a	NC_007345.1	148833	149498	R	TpMuguga_02g00064	complement(148833..149498)	Theileria parva strain Muguga	3501544
TpMuguga_02g00065	mRNA	TpMuguga_02g00065	NC_007345.1	149499	150651	R	TpMuguga_02g00065	complement(149499..150651)	Theileria parva strain Muguga	3501545
TpMuguga_02g00066	mRNA	REEP5	NC_007345.1	151032	152113	D	TpMuguga_02g00066	join(151032..151811,151883..152113)	Theileria parva strain Muguga	3501546
TpMuguga_02g00067	mRNA	TpMuguga_02g00067	NC_007345.1	152168	153279	R	TpMuguga_02g00067	complement(join(152168..152448,152561..152629,152698..152924,152968..153279))	Theileria parva strain Muguga	3501547
TpMuguga_02g00068	mRNA	TpMuguga_02g00068	NC_007345.1	153300	154546	D	TpMuguga_02g00068	153300..154546	Theileria parva strain Muguga	3501500
TpMuguga_02g02645	mRNA	TpMuguga_02g02645	NC_007345.1	154570	158909	R	TpMuguga_02g02645	complement(join(154570..154870,155023..158909))	Theileria parva strain Muguga	3501501
TpMuguga_02g00071	mRNA	TpMuguga_02g00071	NC_007345.1	159712	160984	D	TpMuguga_02g00071	join(159712..160689,160772..160984)	Theileria parva strain Muguga	3501503
TpMuguga_02g02165	mRNA	TpMuguga_02g02165	NC_007345.1	161042	163422	D	TpMuguga_02g02165	join(161042..161114,161170..162341,162385..162679,162709..162769,162859..162958,163042..163137,163170..163255,163347..>163422)	Theileria parva strain Muguga	3501504
TpMuguga_02g02465	mRNA	DXR	NC_007345.1	163403	165105	D	TpMuguga_02g02465	join(<163403..163466,163577..163607,163646..163825,163860..164844,164975..165105)	Theileria parva strain Muguga	3501505
TpMuguga_02g00074	mRNA	TpMuguga_02g00074	NC_007345.1	164949	166839	R	TpMuguga_02g00074	complement(join(164949..165840,165874..165966,166039..166227,166315..166450,166489..166839))	Theileria parva strain Muguga	3501817
TpMuguga_02g00075	mRNA	vps18	NC_007345.1	166843	170381	D	TpMuguga_02g00075	join(166843..167241,167281..167724,167779..168188,168245..168404,168461..169734,169792..169961,170033..170381)	Theileria parva strain Muguga	3501818
TpMuguga_02g00076	mRNA	TpMuguga_02g00076	NC_007345.1	170441	171730	R	TpMuguga_02g00076	complement(join(170441..170666,170728..170968,171044..171105,171143..171252,171284..171415,171449..171730))	Theileria parva strain Muguga	3501819
TpMuguga_02g00077	mRNA	SRD2	NC_007345.1	171759	173473	D	TpMuguga_02g00077	join(171759..172788,172830..173473)	Theileria parva strain Muguga	3501820
TpMuguga_02g00078	mRNA	RPL27	NC_007345.1	173474	174350	D	TpMuguga_02g00078	join(173474..174029,174108..174221,174252..174350)	Theileria parva strain Muguga	3501821
TpMuguga_02g02495	mRNA	TpMuguga_02g02495	NC_007345.1	174440	176823	R	TpMuguga_02g02495	complement(join(174440..175334,175492..176823))	Theileria parva strain Muguga	86047726
TpMuguga_02g00079	mRNA	TpMuguga_02g00079	NC_007345.1	176964	178208	R	TpMuguga_02g00079	complement(join(176964..177265,177295..177340,177400..177728,177847..178208))	Theileria parva strain Muguga	3501822
TpMuguga_02g00080	mRNA	RPL29A	NC_007345.1	178718	179212	D	TpMuguga_02g00080	join(178718..178857,178950..179015,179086..179212)	Theileria parva strain Muguga	3502248
TpMuguga_02g00081	mRNA	rrp4	NC_007345.1	179477	180690	D	TpMuguga_02g00081	join(179477..179823,179940..180200,180233..180386,180417..180690)	Theileria parva strain Muguga	3502250
TpMuguga_02g00082	mRNA	RPL5	NC_007345.1	180912	182422	R	TpMuguga_02g00082	complement(join(180912..180971,181037..181857,182123..182422))	Theileria parva strain Muguga	3502251
TpMuguga_02g00083	mRNA	RPL7A	NC_007345.1	182783	184285	D	TpMuguga_02g00083	join(182783..183297,183442..184285)	Theileria parva strain Muguga	3502252
TpMuguga_02g00084	mRNA	TpMuguga_02g00084	NC_007345.1	186809	188194	R	TpMuguga_02g00084	complement(join(186809..187005,187035..187125,187157..187307,187461..187554,187635..188194))	Theileria parva strain Muguga	3502253
TpMuguga_02g02180	mRNA	las1	NC_007345.1	188279	190546	D	TpMuguga_02g02180	join(188279..188616,188730..188924,188988..189488,189595..>190546)	Theileria parva strain Muguga	3502115
TpMuguga_02g00087	mRNA	TpMuguga_02g00087	NC_007345.1	190844	193559	D	TpMuguga_02g00087	190844..193559	Theileria parva strain Muguga	3502116
TpMuguga_02g00088	mRNA	PRMT11	NC_007345.1	193540	195190	D	TpMuguga_02g00088	join(193540..193903,193966..194297,194333..194410,194525..194656,194687..194996,195027..195190)	Theileria parva strain Muguga	3502117
TpMuguga_02g00089	mRNA	rpl21b	NC_007345.1	195252	196020	R	TpMuguga_02g00089	complement(join(195252..195759,195888..196020))	Theileria parva strain Muguga	3502118
TpMuguga_02g00090	mRNA	Btf3	NC_007345.1	196279	197024	R	TpMuguga_02g00090	complement(196279..197024)	Theileria parva strain Muguga	3502119
TpMuguga_02g02520	mRNA	TpMuguga_02g02520	NC_007345.1	197076	198476	D	TpMuguga_02g02520	join(197076..197664,197721..197834,197934..198476)	Theileria parva strain Muguga	3502120
TpMuguga_02g00093	mRNA	RpL10	NC_007345.1	198582	199728	R	TpMuguga_02g00093	complement(join(198582..198866,198963..199163,199258..199728))	Theileria parva strain Muguga	3502007
TpMuguga_02g00094	mRNA	rplX	NC_007345.1	199798	201052	R	TpMuguga_02g00094	complement(join(199798..200189,200224..200300,200336..200403,200451..200557,200619..201052))	Theileria parva strain Muguga	3502008
TpMuguga_02g00095	mRNA	RPA1C	NC_007345.1	201222	203821	R	TpMuguga_02g00095	complement(join(201222..201348,201378..201440,201473..201580,201610..201682,201712..201801,201833..201908,201941..202058,202109..202221,202255..202396,202466..202711,202741..202809,202841..202913,202952..203146,203179..203210,203280..203376,203409..203546,203658..203821))	Theileria parva strain Muguga	3502009
TpMuguga_02g00096	mRNA	dnaJ	NC_007345.1	203853	205495	R	TpMuguga_02g00096	complement(join(203853..204527,204560..204659,204691..204738,204770..204909,204939..205027,205060..205495))	Theileria parva strain Muguga	3502010
TpMuguga_02g00097	mRNA	TACP	NC_007345.1	205593	207765	R	TpMuguga_02g00097	complement(join(<205593..205974,206256..207063,207117..>207765))	Theileria parva strain Muguga	3502011
TpMuguga_02g00098	mRNA	EPB2	NC_007345.1	208150	209932	R	TpMuguga_02g00098	complement(join(<208150..208940,209008..>209932))	Theileria parva strain Muguga	3501830
TpMuguga_02g00099	mRNA	EPB2	NC_007345.1	210468	211887	R	TpMuguga_02g00099	complement(join(<210468..211261,211329..>211887))	Theileria parva strain Muguga	3501831
TpMuguga_02g02195	mRNA	TpMuguga_02g02195	NC_007345.1	211886	212339	D	TpMuguga_02g02195	join(211886..211984,212016..212339)	Theileria parva strain Muguga	86047695
TpMuguga_02g00100	mRNA	TpMuguga_02g00100	NC_007345.1	212422	212744	D	TpMuguga_02g00100	join(<212422..212449,212487..212556,212586..212675,212708..>212744)	Theileria parva strain Muguga	3501832
TpMuguga_02g00101	mRNA	ZNF622	NC_007345.1	212777	214024	R	TpMuguga_02g00101	complement(212777..214024)	Theileria parva strain Muguga	3501833
TpMuguga_02g00102	mRNA	Wrn	NC_007345.1	213984	215011	D	TpMuguga_02g00102	join(213984..214232,214271..214373,214414..214601,214631..215011)	Theileria parva strain Muguga	3501834
TpMuguga_02g02575	mRNA	TpMuguga_02g02575	NC_007345.1	215036	216485	R	TpMuguga_02g02575	complement(join(<215036..215096,215132..215437,215467..215653,215684..215943,215976..216032,216073..216229,216271..216297,216341..>216485))	Theileria parva strain Muguga	3501836
TpMuguga_02g00105	mRNA	TpMuguga_02g00105	NC_007345.1	216577	217514	D	TpMuguga_02g00105	<216577..217514	Theileria parva strain Muguga	3501720
TpMuguga_02g00106	mRNA	Lsm3	NC_007345.1	217515	217964	R	TpMuguga_02g00106	complement(join(217515..217612,217643..217738,217781..217866,217908..217964))	Theileria parva strain Muguga	3501721
TpMuguga_02g00107	mRNA	LACS5	NC_007345.1	217984	220497	D	TpMuguga_02g00107	join(217984..218191,218229..218313,218354..219251,219363..219935,220044..220497)	Theileria parva strain Muguga	3501722
TpMuguga_02g02005	mRNA	TpMuguga_02g02005	NC_007345.1	220634	222902	R	TpMuguga_02g02005	complement(join(220634..221374,221404..222288,222320..222464,222498..222535,222581..222902))	Theileria parva strain Muguga	3501723
TpMuguga_02g00110	mRNA	TpMuguga_02g00110	NC_007345.1	222877	225905	R	TpMuguga_02g00110	complement(join(<222877..222983,223013..223834,223864..224339,224373..225570,225616..225905))	Theileria parva strain Muguga	3501725
TpMuguga_02g00111	mRNA	UBP4	NC_007345.1	226264	227621	R	TpMuguga_02g00111	complement(join(226264..227055,227087..227134,227165..227219,227250..227621))	Theileria parva strain Muguga	3501561
TpMuguga_02g00112	mRNA	TpMuguga_02g00112	NC_007345.1	227689	229803	D	TpMuguga_02g00112	join(227689..228190,228222..228371,228402..228535,228605..228947,229012..229106,229137..229207,229273..229520,229551..229803)	Theileria parva strain Muguga	3501562
TpMuguga_02g00113	mRNA	MCM6	NC_007345.1	229628	233276	R	TpMuguga_02g00113	complement(join(229628..232351,232403..232522,232588..233276))	Theileria parva strain Muguga	3501563
TpMuguga_02g00114	mRNA	TpMuguga_02g00114	NC_007345.1	233256	234270	R	TpMuguga_02g00114	complement(join(233256..233434,233472..233648,233684..233843,233874..234270))	Theileria parva strain Muguga	3501564
TpMuguga_02g00115	mRNA	TpMuguga_02g00115	NC_007345.1	234424	236782	D	TpMuguga_02g00115	234424..236782	Theileria parva strain Muguga	3501566
TpMuguga_02g00116	mRNA	TpMuguga_02g00116	NC_007345.1	236779	237461	R	TpMuguga_02g00116	complement(join(236779..236982,237016..237100,237135..237461))	Theileria parva strain Muguga	3501548
TpMuguga_02g00117	mRNA	smc4	NC_007345.1	237659	242103	D	TpMuguga_02g00117	join(<237659..239867,239937..241495,241611..241734,241799..>242103)	Theileria parva strain Muguga	3501549
TpMuguga_02g00118	mRNA	TpMuguga_02g00118	NC_007345.1	242057	243017	D	TpMuguga_02g00118	join(242057..242434,242499..242536,242604..242674,242708..243017)	Theileria parva strain Muguga	3501550
TpMuguga_02g00119	mRNA	KLHDC3	NC_007345.1	243437	249082	D	TpMuguga_02g00119	join(243437..243565,243893..249082)	Theileria parva strain Muguga	3501551
TpMuguga_02g00120	mRNA	TpMuguga_02g00120	NC_007345.1	249751	250985	D	TpMuguga_02g00120	249751..250985	Theileria parva strain Muguga	3501552
TpMuguga_02g00121	mRNA	DERL2	NC_007345.1	250561	251866	R	TpMuguga_02g00121	complement(join(250561..250808,250841..250993,251130..251269,251300..251393,251424..251866))	Theileria parva strain Muguga	3501553
TpMuguga_02g00122	mRNA	TpMuguga_02g00122	NC_007345.1	253281	254054	D	TpMuguga_02g00122	<253281..>254054	Theileria parva strain Muguga	3501554
TpMuguga_02g00123	mRNA	EIF4-A	NC_007345.1	254133	255824	R	TpMuguga_02g00123	complement(join(254133..254208,254275..254401,254463..254940,255019..255256,255289..255824))	Theileria parva strain Muguga	3501593
TpMuguga_02g00124	mRNA	Yars	NC_007345.1	256215	258004	D	TpMuguga_02g00124	join(256215..256366,256438..256552,256592..256714,256743..256814,256844..256939,256970..257045,257088..257134,257166..257196,257227..257321,257352..257401,257432..257654,257704..257799,257831..257866,257896..258004)	Theileria parva strain Muguga	3501594
TpMuguga_02g00125	mRNA	TpMuguga_02g00125	NC_007345.1	257995	259996	R	TpMuguga_02g00125	complement(257995..259996)	Theileria parva strain Muguga	3501595
TpMuguga_02g00126	mRNA	TpMuguga_02g00126	NC_007345.1	260470	262070	D	TpMuguga_02g00126	join(260470..261372,261404..261488,261574..261843,261874..261951,261981..262070)	Theileria parva strain Muguga	3501596
TpMuguga_02g00127	mRNA	TpMuguga_02g00127	NC_007345.1	262067	264460	R	TpMuguga_02g00127	complement(join(262067..262222,262253..262354,262392..262522,262552..262638,262709..262807,262860..262960,262991..263136,263168..263411,263466..263599,263632..263894,263924..264144,264220..264460))	Theileria parva strain Muguga	3501597
TpMuguga_02g00128	mRNA	TpMuguga_02g00128	NC_007345.1	264841	266037	D	TpMuguga_02g00128	join(264841..265367,265398..265650,265682..265805,265837..266037)	Theileria parva strain Muguga	3501609
TpMuguga_02g00129	mRNA	ddi1	NC_007345.1	266064	267593	R	TpMuguga_02g00129	complement(join(266064..266191,266225..266596,266626..266705,266738..266814,266846..266993,267022..267191,267227..267475,267517..267593))	Theileria parva strain Muguga	3501610
TpMuguga_02g00130	mRNA	TpMuguga_02g00130	NC_007345.1	267697	268297	R	TpMuguga_02g00130	complement(267697..268297)	Theileria parva strain Muguga	3501611
TpMuguga_02g00131	mRNA	TpMuguga_02g00131	NC_007345.1	268439	271575	R	TpMuguga_02g00131	complement(join(268439..268522,268559..268598,268628..268688,268718..268873,268905..269042,269073..269348,269379..269509,269538..270059,270088..270188,270241..270386,270416..270628,270658..270853,270883..270944,270974..271333,271368..271575))	Theileria parva strain Muguga	3501612
TpMuguga_02g00132	mRNA	TpMuguga_02g00132	NC_007345.1	271659	274712	D	TpMuguga_02g00132	join(271659..271870,271912..272036,272067..272151,272183..272341,272388..272528,272561..272643,272677..272786,272831..272986,273027..273130,273187..273269,273299..273367,273398..273533,273606..273705,273759..274396,274442..274712)	Theileria parva strain Muguga	3501613
TpMuguga_02g02405	mRNA	TpMuguga_02g02405	NC_007345.1	274420	276247	R	TpMuguga_02g02405	complement(join(274420..274709,274809..275036,275093..276122,276153..>276247))	Theileria parva strain Muguga	86047718
TpMuguga_02g02410	mRNA	TpMuguga_02g02410	NC_007345.1	276219	276976	R	TpMuguga_02g02410	complement(join(<276219..276273,276304..276545,276579..276976))	Theileria parva strain Muguga	3501882
TpMuguga_02g00134	mRNA	pyk	NC_007345.1	277042	279299	D	TpMuguga_02g00134	277042..279299	Theileria parva strain Muguga	3501883
TpMuguga_02g00135	mRNA	TpMuguga_02g00135	NC_007345.1	279277	280593	R	TpMuguga_02g00135	complement(join(279277..279558,279588..280593))	Theileria parva strain Muguga	3501884
TpMuguga_02g00136	mRNA	TpMuguga_02g00136	NC_007345.1	280578	281599	D	TpMuguga_02g00136	join(280578..280835,280867..281034,281068..281214,281247..281441,281471..>281599)	Theileria parva strain Muguga	3501885
TpMuguga_02g00137	mRNA	TpMuguga_02g00137	NC_007345.1	281609	282181	D	TpMuguga_02g00137	join(<281609..281734,281792..281894,281924..281975,282005..282081,282111..282181)	Theileria parva strain Muguga	86047667
TpMuguga_02g00138	mRNA	TpMuguga_02g00138	NC_007345.1	282201	283760	R	TpMuguga_02g00138	complement(282201..283760)	Theileria parva strain Muguga	3501887
TpMuguga_02g00139	mRNA	NEK2	NC_007345.1	283744	285356	R	TpMuguga_02g00139	complement(join(283744..284851,284908..285220,285262..285356))	Theileria parva strain Muguga	3501888
TpMuguga_02g00140	mRNA	Ctsk	NC_007345.1	285551	287073	R	TpMuguga_02g00140	complement(285551..287073)	Theileria parva strain Muguga	3502095
TpMuguga_02g00141	mRNA	Slc25a5	NC_007345.1	287633	288686	R	TpMuguga_02g00141	complement(287633..288686)	Theileria parva strain Muguga	3502096
TpMuguga_02g00142	mRNA	TpMuguga_02g00142	NC_007345.1	288960	290015	D	TpMuguga_02g00142	join(288960..289253,289400..289533,289582..289654,289693..289850,289897..290015)	Theileria parva strain Muguga	3502097
TpMuguga_02g00143	mRNA	dnm1l	NC_007345.1	290016	292743	D	TpMuguga_02g00143	join(290016..290379,290410..290888,290919..291069,291100..291187,291242..291591,291732..291884,291915..292064,292095..292238,292271..292407,292437..292613,292650..292743)	Theileria parva strain Muguga	3502098
TpMuguga_02g00144	mRNA	repB	NC_007345.1	292748	295428	D	TpMuguga_02g00144	join(292748..293073,293111..293242,293274..293490,293523..293766,293801..294650,294685..294791,294822..294972,295078..>295428)	Theileria parva strain Muguga	3502099
TpMuguga_02g00145	mRNA	TpMuguga_02g00145	NC_007345.1	295462	296411	D	TpMuguga_02g00145	join(<295462..295689,295728..295868,295909..296022,296053..296113,296146..296411)	Theileria parva strain Muguga	3502100
TpMuguga_02g00146	mRNA	TpMuguga_02g00146	NC_007345.1	296127	299196	R	TpMuguga_02g00146	complement(join(296127..296758,296907..297014,297063..299196))	Theileria parva strain Muguga	3502278
TpMuguga_02g00147	mRNA	TpMuguga_02g00147	NC_007345.1	299292	300264	D	TpMuguga_02g00147	299292..300264	Theileria parva strain Muguga	3502279
TpMuguga_02g00148	mRNA	TpMuguga_02g00148	NC_007345.1	300389	302627	D	TpMuguga_02g00148	300389..302627	Theileria parva strain Muguga	3502280
TpMuguga_02g00149	mRNA	TpMuguga_02g00149	NC_007345.1	302647	305171	R	TpMuguga_02g00149	complement(join(302647..304939,304974..305171))	Theileria parva strain Muguga	3502281
TpMuguga_02g02435	mRNA	cpsf-2	NC_007345.1	305157	308241	R	TpMuguga_02g02435	complement(join(305157..306063,306212..306588,306618..306721,306861..307933,307966..308241))	Theileria parva strain Muguga	3502282
TpMuguga_02g00152	mRNA	TpMuguga_02g00152	NC_007345.1	308327	309684	R	TpMuguga_02g00152	complement(join(<308327..309279,309309..>309684))	Theileria parva strain Muguga	3502284
TpMuguga_02g00153	mRNA	TpMuguga_02g00153	NC_007345.1	309751	310080	D	TpMuguga_02g00153	join(<309751..309774,309943..>310080)	Theileria parva strain Muguga	3502261
TpMuguga_02g00154	mRNA	RAD50	NC_007345.1	310369	314795	D	TpMuguga_02g00154	join(<310369..310491,310525..310677,310707..310772,310801..310842,310872..310956,310986..311076,311105..311140,311169..311238,311267..311334,311365..311481,311510..311615,311645..311743,311774..311898,311929..312044,312074..312150,312181..312271,312302..312484,312517..312547,312588..312670,312716..312747,312779..312909,312939..313019,313050..313199,313229..313333,313363..313483,313515..313680,313765..313840,313871..314015,314045..314104,314137..314212,314264..314327,314359..314547,314582..314795)	Theileria parva strain Muguga	3502262
TpMuguga_02g00160	mRNA	TpMuguga_02g00160	NC_007345.1	314852	315743	R	TpMuguga_02g00160	complement(join(314852..315193,315223..315398,315434..315743))	Theileria parva strain Muguga	3502263
TpMuguga_02g00161	mRNA	PEX4	NC_007345.1	315793	317304	R	TpMuguga_02g00161	complement(join(315793..316058,316119..316227,316257..316317,316349..316530,316609..316669,316742..316948,316980..317304))	Theileria parva strain Muguga	3502264
TpMuguga_02g00162	mRNA	COPA	NC_007345.1	317391	322882	D	TpMuguga_02g00162	join(317391..319618,319746..320132,320228..320345,320467..320541,320571..320736,320976..321673,321832..322444,322477..322882)	Theileria parva strain Muguga	3502133
TpMuguga_02g02255	mRNA	TpMuguga_02g02255	NC_007345.1	322647	323501	R	TpMuguga_02g02255	complement(join(322647..322758,322788..322852,322997..323501))	Theileria parva strain Muguga	86047699
TpMuguga_02g00163	mRNA	TpMuguga_02g00163	NC_007345.1	324723	327426	D	TpMuguga_02g00163	<324723..327426	Theileria parva strain Muguga	3502134
TpMuguga_02g00164	mRNA	TpMuguga_02g00164	NC_007345.1	327715	330501	D	TpMuguga_02g00164	327715..330501	Theileria parva strain Muguga	3502135
TpMuguga_02g00165	mRNA	exo2	NC_007345.1	330669	336065	D	TpMuguga_02g00165	330669..336065	Theileria parva strain Muguga	3502136
TpMuguga_02g00166	mRNA	TpMuguga_02g00166	NC_007345.1	336336	339785	R	TpMuguga_02g00166	complement(join(<336336..336475,336631..336712,336742..336809,336903..336996,337089..337334,337418..337842,338007..338200,338229..338440,338479..338669,338741..>339785))	Theileria parva strain Muguga	3502137
TpMuguga_02g00167	mRNA	TpMuguga_02g00167	NC_007345.1	339765	341818	D	TpMuguga_02g00167	join(339765..340762,340824..341818)	Theileria parva strain Muguga	3502138
TpMuguga_02g00168	mRNA	TpMuguga_02g00168	NC_007345.1	342328	344198	R	TpMuguga_02g00168	complement(342328..>344198)	Theileria parva strain Muguga	3502139
TpMuguga_02g00169	mRNA	CEP76	NC_007345.1	344353	346941	R	TpMuguga_02g00169	complement(join(<344353..344580,344701..>346941))	Theileria parva strain Muguga	3502037
TpMuguga_02g00170	mRNA	TpMuguga_02g00170	NC_007345.1	346979	347551	R	TpMuguga_02g00170	complement(join(<346979..347323,347384..>347551))	Theileria parva strain Muguga	3502038
TpMuguga_02g00171	mRNA	Dhodh	NC_007345.1	348094	350034	R	TpMuguga_02g00171	complement(join(348094..348251,348281..348347,348377..348457,348487..348633,348666..348710,348740..348781,348811..349070,349099..349196,349233..349407,349671..349914,349944..350034))	Theileria parva strain Muguga	3502039
TpMuguga_02g00172	mRNA	sec18	NC_007345.1	350035	353666	R	TpMuguga_02g00172	complement(join(350035..350113,350208..350295,350473..350604,350634..350861,351062..351457,351808..352029,352059..352130,352161..352343,352477..352562,352592..352875,352904..353024,353191..353393,353469..353557,353587..353666))	Theileria parva strain Muguga	3502040
TpMuguga_02g00174	mRNA	TpMuguga_02g00174	NC_007345.1	353674	357155	R	TpMuguga_02g00174	complement(join(353674..354034,354310..>357155))	Theileria parva strain Muguga	3501598
TpMuguga_02g02500	mRNA	XPO1	NC_007345.1	357818	362294	R	TpMuguga_02g02500	complement(join(357818..358595,358894..362294))	Theileria parva strain Muguga	3501601
TpMuguga_02g00178	mRNA	CPK3	NC_007345.1	363446	367156	D	TpMuguga_02g00178	join(363446..365320,365527..365838,366191..367156)	Theileria parva strain Muguga	3501602
TpMuguga_02g00179	mRNA	TRMT12	NC_007345.1	367245	371185	D	TpMuguga_02g00179	join(<367245..370342,370372..>371185)	Theileria parva strain Muguga	3501603
TpMuguga_02g00180	mRNA	PHF5A	NC_007345.1	371177	371856	D	TpMuguga_02g00180	join(371177..371316,371467..371579,371646..371856)	Theileria parva strain Muguga	3501604
TpMuguga_02g00181	mRNA	TpMuguga_02g00181	NC_007345.1	372055	376104	D	TpMuguga_02g00181	join(372055..372217,372292..372344,372383..372424,372457..372537,372598..372914,372946..373262,373334..373429,373496..373695,373831..374373,374476..374682,374844..375434,375569..375635,375808..375950,376000..376104)	Theileria parva strain Muguga	3501605
TpMuguga_02g00182	mRNA	TpMuguga_02g00182	NC_007345.1	376055	378685	R	TpMuguga_02g00182	complement(join(376055..377056,377287..377919,378156..378685))	Theileria parva strain Muguga	3501749
TpMuguga_02g00183	mRNA	PHO1-H9	NC_007345.1	378906	382124	R	TpMuguga_02g00183	complement(join(378906..379075,379108..379288,379389..379517,379547..379636,379693..379765,379797..379834,379957..380190,380221..380364,380471..381182,381214..382124))	Theileria parva strain Muguga	3501750
TpMuguga_02g00184	mRNA	TpMuguga_02g00184	NC_007345.1	382201	383790	D	TpMuguga_02g00184	join(382201..382470,382502..382610,382642..382741,382779..382963,382994..383059,383091..383158,383232..383301,383331..383396,383433..383605,383633..383790)	Theileria parva strain Muguga	3501751
TpMuguga_02g00185	mRNA	TpMuguga_02g00185	NC_007345.1	383847	386153	R	TpMuguga_02g00185	complement(<383847..>386153)	Theileria parva strain Muguga	3501752
TpMuguga_02g02675	mRNA	TpMuguga_02g02675	NC_007345.1	386656	388302	D	TpMuguga_02g02675	join(386656..386909,386973..387209,387239..387448,387498..387559,387598..387661,387692..387731,387767..387870,387903..388302)	Theileria parva strain Muguga	3501726
TpMuguga_02g02530	mRNA	TpMuguga_02g02530	NC_007345.1	388468	389787	D	TpMuguga_02g02530	join(388468..388835,388867..389009,389041..389124,389299..389377,389458..389534,389570..389787)	Theileria parva strain Muguga	86047728
TpMuguga_02g00187	mRNA	TpMuguga_02g00187	NC_007345.1	390406	393926	D	TpMuguga_02g00187	390406..393926	Theileria parva strain Muguga	3501727
TpMuguga_02g00188	mRNA	rplX	NC_007345.1	393968	395321	R	TpMuguga_02g00188	complement(join(393968..394134,394172..394239,394422..394468,394500..394546,394575..394660,394695..394790,394878..395321))	Theileria parva strain Muguga	3501728
TpMuguga_02g00189	mRNA	TpMuguga_02g00189	NC_007345.1	395298	396803	R	TpMuguga_02g00189	complement(join(395298..395611,395715..396803))	Theileria parva strain Muguga	3501729
TpMuguga_02g00190	mRNA	TpMuguga_02g00190	NC_007345.1	396808	398538	D	TpMuguga_02g00190	join(396808..397250,397307..397809,397908..397997,398047..398224,398327..398407,398437..398538)	Theileria parva strain Muguga	3501730
TpMuguga_02g00191	mRNA	aurK	NC_007345.1	398496	400368	R	TpMuguga_02g00191	complement(join(398496..399639,399671..399742,399868..399962,400067..400368))	Theileria parva strain Muguga	3501731
TpMuguga_02g02585	mRNA	TpMuguga_02g02585	NC_007345.1	400387	401240	D	TpMuguga_02g02585	join(400387..400808,400838..400929,400956..401083,401113..401240)	Theileria parva strain Muguga	3501518
TpMuguga_02g00194	mRNA	TpMuguga_02g00194	NC_007345.1	401263	403236	R	TpMuguga_02g00194	complement(join(401263..401416,401527..401728,401831..402153,402249..402534,402569..402762,402793..403236))	Theileria parva strain Muguga	3501519
TpMuguga_02g00195	mRNA	TpMuguga_02g00195	NC_007345.1	403952	405127	D	TpMuguga_02g00195	<403952..>405127	Theileria parva strain Muguga	3501520
TpMuguga_02g00196	mRNA	GLRX3	NC_007345.1	405187	406111	R	TpMuguga_02g00196	complement(join(405187..405366,405401..405712,405746..405838,405895..406111))	Theileria parva strain Muguga	3501521
TpMuguga_02g00197	mRNA	Coq3	NC_007345.1	406156	407085	D	TpMuguga_02g00197	<406156..>407085	Theileria parva strain Muguga	3501522
TpMuguga_02g00966	mRNA	TpMuguga_02g00966	NC_007345.1	407112	408359	D	TpMuguga_02g00966	join(<407112..407195,407300..407564,407614..407909,408024..408249,408280..408359)	Theileria parva strain Muguga	3501429
TpMuguga_02g00198	mRNA	top1	NC_007345.1	408434	412131	R	TpMuguga_02g00198	complement(join(408434..408691,408803..408885,408915..409550,409655..409735,409888..410102,410244..412035,412075..412131))	Theileria parva strain Muguga	3501430
TpMuguga_02g00199	mRNA	TpMuguga_02g00199	NC_007345.1	412216	415234	D	TpMuguga_02g00199	join(412216..412275,412423..412566,412705..412859,412963..415234)	Theileria parva strain Muguga	3501431
TpMuguga_02g00200	mRNA	TpMuguga_02g00200	NC_007345.1	415463	418785	R	TpMuguga_02g00200	complement(join(415463..416437,416580..418045,418249..418785))	Theileria parva strain Muguga	3501432
TpMuguga_02g00201	mRNA	RPN11	NC_007345.1	418974	420585	R	TpMuguga_02g00201	complement(join(418974..419354,419455..419639,419714..419854,419923..420057,420088..420184,420297..420585))	Theileria parva strain Muguga	3501433
TpMuguga_02g00202	mRNA	TFIIB1	NC_007345.1	420667	422204	D	TpMuguga_02g00202	420667..422204	Theileria parva strain Muguga	3502254
TpMuguga_02g00203	mRNA	AAK6	NC_007345.1	422216	422986	R	TpMuguga_02g00203	complement(422216..422986)	Theileria parva strain Muguga	3502255
TpMuguga_02g02125	mRNA	rsmB	NC_007345.1	422804	424581	D	TpMuguga_02g02125	join(422804..423494,423595..423737,423773..423901,423932..424027,424073..424153,424345..>424581)	Theileria parva strain Muguga	3502256
TpMuguga_02g02345	mRNA	TpMuguga_02g02345	NC_007345.1	424572	425489	D	TpMuguga_02g02345	join(424572..424773,424873..424996,425065..425193,425251..425321,425354..425394,425425..>425489)	Theileria parva strain Muguga	86047711
TpMuguga_02g00205	mRNA	NRPB9A	NC_007345.1	425581	426308	D	TpMuguga_02g00205	join(425581..425671,425737..425880,425978..>426308)	Theileria parva strain Muguga	3502257
TpMuguga_02g00206	mRNA	erv1	NC_007345.1	425947	426873	R	TpMuguga_02g00206	complement(join(425947..426653,426718..>426873))	Theileria parva strain Muguga	3502258
TpMuguga_02g00207	mRNA	TpMuguga_02g00207	NC_007345.1	426954	428338	R	TpMuguga_02g00207	complement(join(426954..427041,427126..427184,427230..427256,427292..427323,427362..427389,427470..427544,427600..427669,427725..427864,427895..428338))	Theileria parva strain Muguga	3502259
TpMuguga_02g00208	mRNA	TpMuguga_02g00208	NC_007345.1	428323	429084	R	TpMuguga_02g00208	complement(<428323..>429084)	Theileria parva strain Muguga	3502260
TpMuguga_02g02225	mRNA	TpMuguga_02g02225	NC_007345.1	429164	429969	R	TpMuguga_02g02225	complement(join(429164..429269,429369..429527,429684..429795,429826..429969))	Theileria parva strain Muguga	86047698
TpMuguga_02g00209	mRNA	TpMuguga_02g00209	NC_007345.1	430011	431400	D	TpMuguga_02g00209	join(430011..430301,430333..430414,430522..430611,430681..430896,430926..430995,431038..>431400)	Theileria parva strain Muguga	3502322
TpMuguga_02g00210	mRNA	TpMuguga_02g00210	NC_007345.1	431467	432478	R	TpMuguga_02g00210	complement(<431467..432478)	Theileria parva strain Muguga	3502323
TpMuguga_02g00211	mRNA	TpMuguga_02g00211	NC_007345.1	432479	433636	R	TpMuguga_02g00211	complement(432479..433636)	Theileria parva strain Muguga	3502324
TpMuguga_02g00212	mRNA	TpMuguga_02g00212	NC_007345.1	433830	434888	R	TpMuguga_02g00212	complement(433830..434888)	Theileria parva strain Muguga	3502325
TpMuguga_02g00213	mRNA	TpMuguga_02g00213	NC_007345.1	435396	436971	R	TpMuguga_02g00213	complement(435396..436971)	Theileria parva strain Muguga	3502326
TpMuguga_02g00961	mRNA	TpMuguga_02g00961	NC_007345.1	437383	438405	R	TpMuguga_02g00961	complement(437383..438405)	Theileria parva strain Muguga	3502327
TpMuguga_02g00214	mRNA	TpMuguga_02g00214	NC_007345.1	438587	439375	R	TpMuguga_02g00214	complement(<438587..>439375)	Theileria parva strain Muguga	3502328
TpMuguga_02g00215	mRNA	TpMuguga_02g00215	NC_007345.1	439592	440386	R	TpMuguga_02g00215	complement(<439592..>440386)	Theileria parva strain Muguga	3501758
TpMuguga_02g00216	mRNA	TpMuguga_02g00216	NC_007345.1	441499	445176	R	TpMuguga_02g00216	complement(<441499..>445176)	Theileria parva strain Muguga	3501759
TpMuguga_02g00217	mRNA	bud31	NC_007345.1	445732	446811	D	TpMuguga_02g00217	join(445732..446418,446511..446811)	Theileria parva strain Muguga	3501760
TpMuguga_02g00218	mRNA	TpMuguga_02g00218	NC_007345.1	446843	448841	R	TpMuguga_02g00218	complement(join(446843..447540,447613..447945,448025..448541,448679..448841))	Theileria parva strain Muguga	3501761
TpMuguga_02g00219	mRNA	TpMuguga_02g00219	NC_007345.1	448863	451482	D	TpMuguga_02g00219	join(448863..449005,449063..451482)	Theileria parva strain Muguga	3501762
TpMuguga_02g00220	mRNA	TpMuguga_02g00220	NC_007345.1	451505	452096	R	TpMuguga_02g00220	complement(join(451505..451777,451870..452096))	Theileria parva strain Muguga	3501763
TpMuguga_02g00221	mRNA	ATJ10	NC_007345.1	452395	454642	D	TpMuguga_02g00221	452395..454642	Theileria parva strain Muguga	3501764
TpMuguga_02g00222	mRNA	RPS29	NC_007345.1	454645	455079	R	TpMuguga_02g00222	complement(join(454645..454710,454788..454887,454974..455079))	Theileria parva strain Muguga	3501693
TpMuguga_02g00223	mRNA	PRY1	NC_007345.1	455080	456244	R	TpMuguga_02g00223	complement(join(455080..455252,455284..455312,455402..455480,455509..455573,455636..455662,455717..455834,455866..455908,455973..456037,456102..456244))	Theileria parva strain Muguga	3501694
TpMuguga_02g00224	mRNA	TpMuguga_02g00224	NC_007345.1	456322	457884	R	TpMuguga_02g00224	complement(456322..457884)	Theileria parva strain Muguga	3501695
TpMuguga_02g00225	mRNA	TpMuguga_02g00225	NC_007345.1	458119	460254	D	TpMuguga_02g00225	join(458119..458739,458815..458991,459077..459176,459280..459479,459565..460254)	Theileria parva strain Muguga	3501696
TpMuguga_02g00226	mRNA	TpMuguga_02g00226	NC_007345.1	460484	461266	D	TpMuguga_02g00226	<460484..>461266	Theileria parva strain Muguga	3501697
TpMuguga_02g02000	mRNA	PAK1IP1	NC_007345.1	461369	463113	R	TpMuguga_02g02000	complement(join(461369..461706,461760..461836,461867..461928,461958..462059,462114..462177,462228..462597,462686..462753,462785..463113))	Theileria parva strain Muguga	3501698
TpMuguga_02g00229	mRNA	TpMuguga_02g00229	NC_007345.1	463082	463293	R	TpMuguga_02g00229	complement(join(<463082..463150,463201..>463293))	Theileria parva strain Muguga	3501811
TpMuguga_02g00230	mRNA	STX2	NC_007345.1	463215	464754	D	TpMuguga_02g00230	join(463215..463501,463578..463705,463797..464303,464350..464419,464510..>464754)	Theileria parva strain Muguga	3501812
TpMuguga_02g02515	mRNA	TpMuguga_02g02515	NC_007345.1	464986	465995	D	TpMuguga_02g02515	join(464986..465139,465206..465287,465343..465407,465484..465632,465699..465995)	Theileria parva strain Muguga	86047727
TpMuguga_02g00231	mRNA	IPO7	NC_007345.1	466030	469944	D	TpMuguga_02g00231	join(466030..466200,466398..467084,467177..467357,467450..468454,468576..469352,469507..469944)	Theileria parva strain Muguga	3501813
TpMuguga_02g00232	mRNA	TpMuguga_02g00232	NC_007345.1	470163	472447	D	TpMuguga_02g00232	470163..472447	Theileria parva strain Muguga	3501814
TpMuguga_02g00233	mRNA	TpMuguga_02g00233	NC_007345.1	472584	478993	R	TpMuguga_02g00233	complement(join(472584..473359,473473..473943,474044..474157,474302..474629,474662..474733,474891..>478993))	Theileria parva strain Muguga	3501815
TpMuguga_02g02300	mRNA	TpMuguga_02g02300	NC_007345.1	479297	479537	D	TpMuguga_02g02300	join(<479297..479403,479468..>479537)	Theileria parva strain Muguga	86047705
TpMuguga_02g00234	mRNA	TpMuguga_02g00234	NC_007345.1	479539	480085	R	TpMuguga_02g00234	complement(<479539..480085)	Theileria parva strain Muguga	3501816
TpMuguga_02g00235	mRNA	RPL37C	NC_007345.1	480090	480681	R	TpMuguga_02g00235	complement(join(480090..480261,480453..480681))	Theileria parva strain Muguga	3502336
TpMuguga_02g00236	mRNA	TpMuguga_02g00236	NC_007345.1	480806	482791	R	TpMuguga_02g00236	complement(join(480806..480999,481030..481201,481233..481303,481372..481499,481528..481663,481707..482519,482578..482791))	Theileria parva strain Muguga	3502337
TpMuguga_02g00237	mRNA	NRPB10L	NC_007345.1	482735	483329	D	TpMuguga_02g00237	join(482735..482783,482814..483073,483141..483235,483268..483329)	Theileria parva strain Muguga	3502338
TpMuguga_02g00238	mRNA	TpMuguga_02g00238	NC_007345.1	483348	484183	R	TpMuguga_02g00238	complement(join(483348..483405,483437..483536,483604..484183))	Theileria parva strain Muguga	3502339
TpMuguga_02g00239	mRNA	TpMuguga_02g00239	NC_007345.1	484303	487318	R	TpMuguga_02g00239	complement(484303..487318)	Theileria parva strain Muguga	3502340
TpMuguga_02g00240	mRNA	TpMuguga_02g00240	NC_007345.1	487319	488790	R	TpMuguga_02g00240	complement(join(487319..487591,487633..487745,487777..487871,487917..488033,488104..488274,488343..>488790))	Theileria parva strain Muguga	3502341
TpMuguga_02g02665	mRNA	TpMuguga_02g02665	NC_007345.1	488815	489598	R	TpMuguga_02g02665	complement(join(<488815..488941,488982..489225,489275..489376,489407..489598))	Theileria parva strain Muguga	86047737
TpMuguga_02g00241	mRNA	bud32	NC_007345.1	490316	491219	D	TpMuguga_02g00241	join(490316..490472,490540..490947,491018..491068,491109..>491219)	Theileria parva strain Muguga	3502342
TpMuguga_02g00242	mRNA	Sco2	NC_007345.1	491243	492300	R	TpMuguga_02g00242	complement(join(491243..491332,491371..491479,491511..491596,491642..491683,491741..491809,491850..491972,492045..492100,492132..492172,492205..492300))	Theileria parva strain Muguga	3501900
TpMuguga_02g00243	mRNA	pss1	NC_007345.1	492402	495449	R	TpMuguga_02g00243	complement(join(492402..493728,493824..494068,494111..494693,494783..494999,495155..495449))	Theileria parva strain Muguga	3501901
TpMuguga_02g00244	mRNA	TpMuguga_02g00244	NC_007345.1	496224	499314	D	TpMuguga_02g00244	join(496224..496469,496700..497988,498253..498753,498988..499314)	Theileria parva strain Muguga	3501902
TpMuguga_02g00245	mRNA	ARF	NC_007345.1	499692	500473	D	TpMuguga_02g00245	join(499692..500021,500085..500323,500369..500473)	Theileria parva strain Muguga	3501903
TpMuguga_02g00246	mRNA	TpMuguga_02g00246	NC_007345.1	500453	501558	D	TpMuguga_02g00246	500453..501558	Theileria parva strain Muguga	3501904
TpMuguga_02g00247	mRNA	TpMuguga_02g00247	NC_007345.1	501610	503624	D	TpMuguga_02g00247	join(501610..502113,502174..502280,502312..502463,502535..502746,502779..502997,503068..503624)	Theileria parva strain Muguga	3502019
TpMuguga_02g00248	mRNA	Gtpbp4	NC_007345.1	504017	506194	R	TpMuguga_02g00248	complement(join(504017..504491,504589..504755,504785..505482,505514..505791,505899..506096,506143..506194))	Theileria parva strain Muguga	3502021
TpMuguga_02g00249	mRNA	TpMuguga_02g00249	NC_007345.1	506297	507838	D	TpMuguga_02g00249	506297..507838	Theileria parva strain Muguga	3502022
TpMuguga_02g00250	mRNA	TpMuguga_02g00250	NC_007345.1	507934	509757	D	TpMuguga_02g00250	join(507934..508092,508244..509757)	Theileria parva strain Muguga	3502023
TpMuguga_02g00251	mRNA	nat10	NC_007345.1	509765	512711	R	TpMuguga_02g00251	complement(join(509765..509936,509970..510144,510174..512297,512329..512711))	Theileria parva strain Muguga	3502024
TpMuguga_02g02400	mRNA	TpMuguga_02g02400	NC_007345.1	512954	513507	R	TpMuguga_02g02400	complement(join(<512954..513123,513155..513215,513248..513325,513356..513425,513457..513507))	Theileria parva strain Muguga	86047717
TpMuguga_02g00252	mRNA	TpMuguga_02g00252	NC_007345.1	513484	514324	R	TpMuguga_02g00252	complement(join(513484..513703,513862..513974,514007..514102,514137..514324))	Theileria parva strain Muguga	3502025
TpMuguga_02g00253	mRNA	atp5D	NC_007345.1	514334	515079	D	TpMuguga_02g00253	join(514334..514556,514599..514740,514772..514924,514955..515079)	Theileria parva strain Muguga	3502053
TpMuguga_02g00254	mRNA	TpMuguga_02g00254	NC_007345.1	514946	515502	R	TpMuguga_02g00254	complement(join(514946..515061,515096..515400,515430..>515502))	Theileria parva strain Muguga	3502054
TpMuguga_02g00255	mRNA	TpMuguga_02g00255	NC_007345.1	515628	516544	R	TpMuguga_02g00255	complement(join(<515628..515763,515817..515892,515985..516544))	Theileria parva strain Muguga	3502055
TpMuguga_02g00256	mRNA	TpMuguga_02g00256	NC_007345.1	516584	517449	D	TpMuguga_02g00256	join(516584..516795,516833..516917,516947..516989,517026..517118,517148..517228,517258..>517449)	Theileria parva strain Muguga	3502056
TpMuguga_02g00257	mRNA	PREP1	NC_007345.1	517235	520822	R	TpMuguga_02g00257	complement(517235..>520822)	Theileria parva strain Muguga	3502057
TpMuguga_02g02035	mRNA	TpMuguga_02g02035	NC_007345.1	521130	525256	R	TpMuguga_02g02035	complement(join(<521130..521812,521843..521994,522024..522192,522221..522475,522624..522782,522824..522980,523012..523117,523147..523253,523283..523527,523559..523696,523733..523833,523905..524032,524063..524192,524263..524361,524391..524547,524578..524796,524878..524937,524974..>525256))	Theileria parva strain Muguga	3502107
TpMuguga_02g00260	mRNA	PREP1	NC_007345.1	525272	528939	R	TpMuguga_02g00260	complement(525272..528939)	Theileria parva strain Muguga	3502108
TpMuguga_02g00261	mRNA	pli1	NC_007345.1	529011	530796	D	TpMuguga_02g00261	529011..530796	Theileria parva strain Muguga	3502109
TpMuguga_02g00262	mRNA	TpMuguga_02g00262	NC_007345.1	530865	533770	R	TpMuguga_02g00262	complement(join(530865..533388,533449..>533770))	Theileria parva strain Muguga	3502110
TpMuguga_02g00263	mRNA	TpMuguga_02g00263	NC_007345.1	533841	534947	R	TpMuguga_02g00263	complement(join(533841..534547,534579..534623,534660..534947))	Theileria parva strain Muguga	86047668
TpMuguga_02g00264	mRNA	rbm42	NC_007345.1	534920	535812	D	TpMuguga_02g00264	534920..535812	Theileria parva strain Muguga	3502112
TpMuguga_02g00265	mRNA	TpMuguga_02g00265	NC_007345.1	535835	536507	R	TpMuguga_02g00265	complement(join(535835..536115,536208..536252,536282..536507))	Theileria parva strain Muguga	3502113
TpMuguga_02g02080	mRNA	TpMuguga_02g02080	NC_007345.1	536612	540433	R	TpMuguga_02g02080	complement(join(536612..537496,537625..537899,537956..538561,538640..538959,539022..540433))	Theileria parva strain Muguga	3502121
TpMuguga_02g00268	mRNA	TpMuguga_02g00268	NC_007345.1	540623	542152	R	TpMuguga_02g00268	complement(540623..542152)	Theileria parva strain Muguga	3502123
TpMuguga_02g00269	mRNA	TRP3	NC_007345.1	542131	544351	R	TpMuguga_02g00269	complement(join(<542131..542499,542593..543144,543230..543406,543455..543603,543647..543845,543900..544351))	Theileria parva strain Muguga	3502124
TpMuguga_02g02200	mRNA	DOA1	NC_007345.1	544493	547097	D	TpMuguga_02g02200	join(544493..545088,545162..545309,545396..545491,545522..545659,545710..545834,545894..546001,546034..546159,546190..546260,546352..546480,546513..546651,546705..547097)	Theileria parva strain Muguga	3502125
TpMuguga_02g00272	mRNA	TpMuguga_02g00272	NC_007345.1	547171	548180	R	TpMuguga_02g00272	complement(join(547171..547233,547266..547641,547752..548180))	Theileria parva strain Muguga	3502174
TpMuguga_02g02395	mRNA	TpMuguga_02g02395	NC_007345.1	548229	548790	D	TpMuguga_02g02395	join(548229..548387,548429..548539,548613..548649,548682..548740,548782..>548790)	Theileria parva strain Muguga	3502175
TpMuguga_02g02065	mRNA	TpMuguga_02g02065	NC_007345.1	548852	549546	D	TpMuguga_02g02065	join(<548852..549060,549110..549546)	Theileria parva strain Muguga	86047683
TpMuguga_02g00274	mRNA	TpMuguga_02g00274	NC_007345.1	549559	551577	R	TpMuguga_02g00274	complement(<549559..>551577)	Theileria parva strain Muguga	3502176
TpMuguga_02g00275	mRNA	TpMuguga_02g00275	NC_007345.1	552040	553239	R	TpMuguga_02g00275	complement(552040..>553239)	Theileria parva strain Muguga	3502177
TpMuguga_02g02290	mRNA	TpMuguga_02g02290	NC_007345.1	554343	556325	R	TpMuguga_02g02290	complement(<554343..556325)	Theileria parva strain Muguga	86047704
TpMuguga_02g02295	mRNA	Pole2	NC_007345.1	556593	558060	R	TpMuguga_02g02295	complement(join(<556593..556672,556705..556783,556847..556954,556987..557171,557264..557314,557346..557396,557460..557672,557743..557866,557913..558014,558046..>558060))	Theileria parva strain Muguga	3502178
TpMuguga_02g02285	mRNA	TpMuguga_02g02285	NC_007345.1	558287	559291	R	TpMuguga_02g02285	complement(join(<558287..558301,558363..558459,558508..558606,558641..558926,559019..559291))	Theileria parva strain Muguga	86047703
TpMuguga_02g02535	mRNA	TpMuguga_02g02535	NC_007345.1	559348	565973	R	TpMuguga_02g02535	complement(join(559348..560206,560317..561080,561187..564913,564980..565546,565578..565973))	Theileria parva strain Muguga	3502179
TpMuguga_02g00280	mRNA	TpMuguga_02g00280	NC_007345.1	566125	568035	R	TpMuguga_02g00280	complement(join(566125..566604,566636..567401,567441..567481,567514..567624,567654..567724,567790..568035))	Theileria parva strain Muguga	3502194
TpMuguga_02g00281	mRNA	dnaJ	NC_007345.1	568053	569822	R	TpMuguga_02g00281	complement(join(568053..568258,568332..568437,568469..568560,568624..568758,568808..569085,569143..569822))	Theileria parva strain Muguga	3502195
TpMuguga_02g00282	mRNA	TpMuguga_02g00282	NC_007345.1	569782	570765	D	TpMuguga_02g00282	join(569782..570034,570173..570306,570377..570467,570501..570561,570594..570629,570663..570765)	Theileria parva strain Muguga	3502196
TpMuguga_02g02610	mRNA	TpMuguga_02g02610	NC_007345.1	570788	571182	R	TpMuguga_02g02610	complement(join(570788..570950,570983..571045,571079..571182))	Theileria parva strain Muguga	86047734
TpMuguga_02g00283	mRNA	RPL39C	NC_007345.1	571225	571812	R	TpMuguga_02g00283	complement(join(571225..571327,571374..571477,571638..571812))	Theileria parva strain Muguga	3502197
TpMuguga_02g02445	mRNA	TpMuguga_02g02445	NC_007345.1	571745	572427	D	TpMuguga_02g02445	join(571745..571953,572019..572204,572240..572427)	Theileria parva strain Muguga	86047722
TpMuguga_02g00284	mRNA	TpMuguga_02g00284	NC_007345.1	572551	574719	D	TpMuguga_02g00284	<572551..>574719	Theileria parva strain Muguga	3502180
TpMuguga_02g00285	mRNA	TpMuguga_02g00285	NC_007345.1	574793	577157	R	TpMuguga_02g00285	complement(join(574793..575034,575107..575361,575460..576279,576356..576464,576496..576609,576647..577157))	Theileria parva strain Muguga	3502181
TpMuguga_02g00286	mRNA	Ddx42	NC_007345.1	577196	579263	R	TpMuguga_02g00286	complement(577196..579263)	Theileria parva strain Muguga	3502182
TpMuguga_02g00287	mRNA	Pde12	NC_007345.1	579323	581842	R	TpMuguga_02g00287	complement(join(579323..579462,579559..579785,579867..580185,580225..581443,581515..581842))	Theileria parva strain Muguga	3502183
TpMuguga_02g00288	mRNA	Ube2b	NC_007345.1	581844	582577	D	TpMuguga_02g00288	join(581844..582246,582278..582366,582396..582577)	Theileria parva strain Muguga	3502184
TpMuguga_02g00289	mRNA	TpMuguga_02g00289	NC_007345.1	582701	584859	R	TpMuguga_02g00289	complement(join(582701..583219,583293..583521,583556..583681,583761..583901,583977..584112,584182..584429,584499..584737,584774..584859))	Theileria parva strain Muguga	3502185
TpMuguga_02g00290	mRNA	sec22	NC_007345.1	584927	585951	R	TpMuguga_02g00290	complement(join(584927..585183,585213..585359,585401..585951))	Theileria parva strain Muguga	3502000
TpMuguga_02g00291	mRNA	TpMuguga_02g00291	NC_007345.1	585985	586509	R	TpMuguga_02g00291	complement(join(585985..586046,586084..586214,586246..586296,586339..586447,586487..>586509))	Theileria parva strain Muguga	3502001
TpMuguga_02g00292	mRNA	dhx8	NC_007345.1	586731	589047	R	TpMuguga_02g00292	complement(join(<586731..586854,586886..586950,586983..587219,587252..587349,587403..587536,587578..587708,587750..587856,587885..588374,588454..589047))	Theileria parva strain Muguga	3502002
TpMuguga_02g00293	mRNA	TpMuguga_02g00293	NC_007345.1	589113	590945	R	TpMuguga_02g00293	complement(589113..590945)	Theileria parva strain Muguga	3502003
TpMuguga_02g00294	mRNA	TpMuguga_02g00294	NC_007345.1	590946	592020	R	TpMuguga_02g00294	complement(join(590946..591000,591072..591525,591557..591729,591761..592020))	Theileria parva strain Muguga	3502004
TpMuguga_02g02130	mRNA	TpMuguga_02g02130	NC_007345.1	591487	594227	D	TpMuguga_02g02130	join(591487..592319,592349..592499,592528..592584,592614..592707,592765..592872,592901..593011,593066..593147,593183..593543,593575..593642,593676..593796,593825..593950,593982..594227)	Theileria parva strain Muguga	3502005
TpMuguga_02g00297	mRNA	TpMuguga_02g00297	NC_007345.1	594204	595231	R	TpMuguga_02g00297	complement(join(594204..594519,594552..594705,594734..595231))	Theileria parva strain Muguga	3501895
TpMuguga_02g02580	mRNA	TpMuguga_02g02580	NC_007345.1	595281	598389	R	TpMuguga_02g02580	complement(join(595281..596088,596120..596292,596323..596574,596648..596707,596740..596803,596833..596879,596940..597022,597057..597143,597203..597383,597414..597649,597690..597823,597916..598148,598225..598389))	Theileria parva strain Muguga	86047731
TpMuguga_02g00298	mRNA	rps11	NC_007345.1	595349	596029	D	TpMuguga_02g00298	join(595349..595515,595552..596029)	Theileria parva strain Muguga	3501896
TpMuguga_02g00299	mRNA	TpMuguga_02g00299	NC_007345.1	598388	598837	D	TpMuguga_02g00299	598388..598837	Theileria parva strain Muguga	3501897
TpMuguga_02g00300	mRNA	TpMuguga_02g00300	NC_007345.1	599189	601887	D	TpMuguga_02g00300	join(599189..600395,600487..601887)	Theileria parva strain Muguga	3501898
TpMuguga_02g00301	mRNA	TpMuguga_02g00301	NC_007345.1	601537	602574	R	TpMuguga_02g00301	complement(join(601537..601666,601696..601802,601958..602574))	Theileria parva strain Muguga	3501899
TpMuguga_02g00302	mRNA	TpMuguga_02g00302	NC_007345.1	602575	605224	R	TpMuguga_02g00302	complement(join(602575..603871,603903..604093,604212..604456,604530..604747,604817..605224))	Theileria parva strain Muguga	3501837
TpMuguga_02g00303	mRNA	EIF3K	NC_007345.1	605246	606154	D	TpMuguga_02g00303	605246..606154	Theileria parva strain Muguga	3501838
TpMuguga_02g00304	mRNA	BETAC-AD	NC_007345.1	606264	609198	R	TpMuguga_02g00304	complement(join(606264..608457,608545..608684,608801..609198))	Theileria parva strain Muguga	3501839
TpMuguga_02g00305	mRNA	RPL30	NC_007345.1	609400	609954	R	TpMuguga_02g00305	complement(join(609400..609629,609664..609954))	Theileria parva strain Muguga	3501840
TpMuguga_02g00306	mRNA	TpMuguga_02g00306	NC_007345.1	610160	612427	R	TpMuguga_02g00306	complement(<610160..>612427)	Theileria parva strain Muguga	3501841
TpMuguga_02g00307	mRNA	TIF3H1	NC_007345.1	612873	614054	R	TpMuguga_02g00307	complement(join(612873..613286,613326..614054))	Theileria parva strain Muguga	3501842
TpMuguga_02g00308	mRNA	TpMuguga_02g00308	NC_007345.1	614116	615588	D	TpMuguga_02g00308	join(614116..614311,614344..614410,614535..614644,614730..614884,614914..615588)	Theileria parva strain Muguga	3501843
TpMuguga_02g00309	mRNA	TpMuguga_02g00309	NC_007345.1	617826	619873	D	TpMuguga_02g00309	617826..619873	Theileria parva strain Muguga	3501753
TpMuguga_02g00310	mRNA	ileS	NC_007345.1	619985	624032	R	TpMuguga_02g00310	complement(join(619985..620983,621083..621842,621993..622411,622473..622889,622994..623263,623310..623476,623621..623802,623844..624032))	Theileria parva strain Muguga	3501754
TpMuguga_02g00311	mRNA	CPN21	NC_007345.1	624054	625511	D	TpMuguga_02g00311	join(624054..624364,624395..624540,624673..624737,624938..625007,625041..625165,625206..625511)	Theileria parva strain Muguga	3501755
TpMuguga_02g00312	mRNA	TRF5	NC_007345.1	625556	627644	D	TpMuguga_02g00312	join(625556..625783,625815..625935,625989..626143,626255..626324,626364..626543,626575..626642,626673..626923,626953..627034,627078..627152,627208..627644)	Theileria parva strain Muguga	3501756
TpMuguga_02g00313	mRNA	trappc2	NC_007345.1	627713	628398	R	TpMuguga_02g00313	complement(627713..628398)	Theileria parva strain Muguga	3501757
TpMuguga_02g00314	mRNA	TpMuguga_02g00314	NC_007345.1	628392	630531	R	TpMuguga_02g00314	complement(628392..>630531)	Theileria parva strain Muguga	3501653
TpMuguga_02g00315	mRNA	TpMuguga_02g00315	NC_007345.1	630992	633180	D	TpMuguga_02g00315	join(630992..632081,632113..632221,632274..632393,632424..632537,632568..632630,632686..632772,632802..632902,632935..633069,633100..633180)	Theileria parva strain Muguga	3501654
TpMuguga_02g02670	mRNA	TpMuguga_02g02670	NC_007345.1	633074	633802	R	TpMuguga_02g02670	complement(join(633074..633174,633211..633412,633450..633567,633600..633802))	Theileria parva strain Muguga	86047738
TpMuguga_02g00316	mRNA	Ddx41	NC_007345.1	633855	636081	D	TpMuguga_02g00316	join(<633855..634238,634277..634607,634638..634998,635120..635664,635704..635973,636016..636081)	Theileria parva strain Muguga	3501655
TpMuguga_02g00317	mRNA	Rpl27a	NC_007345.1	636140	636847	D	TpMuguga_02g00317	join(636140..636520,636552..636847)	Theileria parva strain Muguga	3501656
TpMuguga_02g00318	mRNA	TpMuguga_02g00318	NC_007345.1	636997	639250	R	TpMuguga_02g00318	complement(636997..639250)	Theileria parva strain Muguga	3501657
TpMuguga_02g00319	mRNA	dtymk	NC_007345.1	639333	640281	R	TpMuguga_02g00319	complement(join(639333..639459,639494..639603,639638..639746,639780..639870,639910..640021,640065..640147,640183..640281))	Theileria parva strain Muguga	3501658
TpMuguga_02g00320	mRNA	Cdk6	NC_007345.1	640297	642327	D	TpMuguga_02g00320	join(640297..641453,641483..641649,641774..641907,641939..642327)	Theileria parva strain Muguga	3501647
TpMuguga_02g00321	mRNA	TpMuguga_02g00321	NC_007345.1	642514	644460	D	TpMuguga_02g00321	join(642514..642858,642899..644460)	Theileria parva strain Muguga	3501648
TpMuguga_02g02375	mRNA	TpMuguga_02g02375	NC_007345.1	644536	645316	R	TpMuguga_02g02375	complement(join(644536..644772,644802..645026,645056..645316))	Theileria parva strain Muguga	86047714
TpMuguga_02g00322	mRNA	glnS	NC_007345.1	645360	647706	R	TpMuguga_02g00322	complement(join(645360..645905,646023..646151,646184..646316,646346..646528,646559..647706))	Theileria parva strain Muguga	3501649
TpMuguga_02g00323	mRNA	RPL23C	NC_007345.1	647926	648558	D	TpMuguga_02g00323	join(647926..648045,648104..648219,648250..648558)	Theileria parva strain Muguga	3501650
TpMuguga_02g00324	mRNA	sed5	NC_007345.1	648642	649936	R	TpMuguga_02g00324	complement(join(648642..648716,648747..648808,648840..649030,649127..649936))	Theileria parva strain Muguga	3501651
TpMuguga_02g02045	mRNA	Fra10ac1	NC_007345.1	649801	650346	D	TpMuguga_02g02045	join(649801..649870,649908..650006,650043..650186,650216..650300,650333..>650346)	Theileria parva strain Muguga	86047681
TpMuguga_02g02040	mRNA	TpMuguga_02g02040	NC_007345.1	650369	651470	D	TpMuguga_02g02040	join(<650369..650422,650453..650599,650631..650711,650743..650861,650892..650943,650975..651087,651117..651178,651208..651262,651294..651470)	Theileria parva strain Muguga	3501652
TpMuguga_02g00326	mRNA	TpMuguga_02g00326	NC_007345.1	651459	656898	D	TpMuguga_02g00326	join(651459..651685,651716..651789,651819..651897,651951..652213,652249..652336,652421..652723,652755..654774,654861..655454,655487..655733,655835..655934,655965..656686,656719..656898)	Theileria parva strain Muguga	3502310
TpMuguga_02g00327	mRNA	TpMuguga_02g00327	NC_007345.1	657058	657681	R	TpMuguga_02g00327	complement(657058..>657681)	Theileria parva strain Muguga	3502311
TpMuguga_02g00328	mRNA	BRD1	NC_007345.1	658496	659914	R	TpMuguga_02g00328	complement(join(658496..658602,658638..659914))	Theileria parva strain Muguga	3502312
TpMuguga_02g00329	mRNA	ABD1	NC_007345.1	659903	662309	R	TpMuguga_02g00329	complement(join(659903..660416,660486..662309))	Theileria parva strain Muguga	3502313
TpMuguga_02g00330	mRNA	TpMuguga_02g00330	NC_007345.1	662385	663163	D	TpMuguga_02g00330	662385..663163	Theileria parva strain Muguga	3502314
TpMuguga_02g00331	mRNA	ptr3	NC_007345.1	663311	666948	R	TpMuguga_02g00331	complement(join(663311..664839,664929..665477,665509..666948))	Theileria parva strain Muguga	3502315
TpMuguga_02g00332	mRNA	RH36	NC_007345.1	666925	668532	R	TpMuguga_02g00332	complement(666925..668532)	Theileria parva strain Muguga	3501434
TpMuguga_02g00333	mRNA	EIF6	NC_007345.1	668548	669569	D	TpMuguga_02g00333	join(668548..668669,668701..668883,668926..669318,669351..669569)	Theileria parva strain Muguga	3501435
TpMuguga_02g00334	mRNA	nfo	NC_007345.1	669592	671256	D	TpMuguga_02g00334	join(669592..669745,669843..670041,670071..670205,670252..670307,670337..670442,670476..670568,670600..670649,670681..670818,670855..670894,670961..>671256)	Theileria parva strain Muguga	3501436
TpMuguga_02g00335	mRNA	TpMuguga_02g00335	NC_007345.1	671506	672911	D	TpMuguga_02g00335	join(671506..671825,671864..672141,672171..672370,672401..672571,672602..672822,672857..672911)	Theileria parva strain Muguga	3501438
TpMuguga_02g02550	mRNA	TpMuguga_02g02550	NC_007345.1	672832	673548	R	TpMuguga_02g02550	complement(join(672832..672919,672950..673128,673158..673277,673311..673548))	Theileria parva strain Muguga	86047729
TpMuguga_02g00336	mRNA	TpMuguga_02g00336	NC_007345.1	673539	674635	D	TpMuguga_02g00336	join(673539..673939,673972..674018,674049..674191,674220..674349,674439..674635)	Theileria parva strain Muguga	3501439
TpMuguga_02g00337	mRNA	UTP4	NC_007345.1	674427	677227	R	TpMuguga_02g00337	complement(join(674427..676726,676758..676913,676954..677227))	Theileria parva strain Muguga	3502355
TpMuguga_02g00338	mRNA	ATG8	NC_007345.1	677715	678383	D	TpMuguga_02g00338	join(677715..677849,677923..678028,678067..678383)	Theileria parva strain Muguga	3502356
TpMuguga_02g00339	mRNA	mnmA	NC_007345.1	678409	680712	D	TpMuguga_02g00339	join(<678409..679301,679331..679449,679480..679609,679639..679960,679991..680712)	Theileria parva strain Muguga	3502357
TpMuguga_02g00340	mRNA	TpMuguga_02g00340	NC_007345.1	680774	682075	D	TpMuguga_02g00340	<680774..>682075	Theileria parva strain Muguga	3502358
TpMuguga_02g00341	mRNA	TpMuguga_02g00341	NC_007345.1	682213	682920	R	TpMuguga_02g00341	complement(join(682213..682294,682324..682920))	Theileria parva strain Muguga	86047669
TpMuguga_02g00342	mRNA	TpMuguga_02g00342	NC_007345.1	682869	684269	D	TpMuguga_02g00342	join(682869..683079,683111..683143,683176..683330,683361..683487,683529..683770,683801..684034,684065..684154,684186..684269)	Theileria parva strain Muguga	3502360
TpMuguga_02g00343	mRNA	ADRM1	NC_007345.1	684177	684855	R	TpMuguga_02g00343	complement(join(684177..684318,684348..684488,684523..684579,684635..684855))	Theileria parva strain Muguga	3502361
TpMuguga_02g00344	mRNA	Usp42	NC_007345.1	684838	686867	R	TpMuguga_02g00344	complement(684838..>686867)	Theileria parva strain Muguga	3501628
TpMuguga_02g02270	mRNA	TpMuguga_02g02270	NC_007345.1	687006	687609	D	TpMuguga_02g02270	join(<687006..687184,687215..687268,687298..687362,687394..687609)	Theileria parva strain Muguga	86047700
TpMuguga_02g00345	mRNA	TpMuguga_02g00345	NC_007345.1	687420	688254	R	TpMuguga_02g00345	complement(join(687420..687573,687605..687717,687749..687812,687869..688056,688101..688254))	Theileria parva strain Muguga	3501629
TpMuguga_02g00346	mRNA	TpMuguga_02g00346	NC_007345.1	688258	689534	R	TpMuguga_02g00346	complement(join(688258..689159,689190..689341,689383..689534))	Theileria parva strain Muguga	86047670
TpMuguga_02g00347	mRNA	rps9	NC_007345.1	689591	691651	R	TpMuguga_02g00347	complement(join(689591..691353,691386..691429,691473..691651))	Theileria parva strain Muguga	3501631
TpMuguga_02g00348	mRNA	TpMuguga_02g00348	NC_007345.1	691987	693142	D	TpMuguga_02g00348	join(691987..692856,692887..693041,693074..693142)	Theileria parva strain Muguga	3501632
TpMuguga_02g00349	mRNA	TpMuguga_02g00349	NC_007345.1	693222	695057	D	TpMuguga_02g00349	join(693222..694268,694346..694747,694780..694828,694860..695057)	Theileria parva strain Muguga	3501633
TpMuguga_02g00350	mRNA	gsp-2	NC_007345.1	695320	696916	D	TpMuguga_02g00350	join(695320..696257,696289..696752,696848..696916)	Theileria parva strain Muguga	3501743
TpMuguga_02g00351	mRNA	TpMuguga_02g00351	NC_007345.1	696970	701062	R	TpMuguga_02g00351	complement(join(696970..697126,697167..697339,697414..701062))	Theileria parva strain Muguga	3501744
TpMuguga_02g00352	mRNA	CEG1	NC_007345.1	701162	702731	D	TpMuguga_02g00352	join(701162..701360,701392..701596,701630..702016,702046..702120,702153..702226,702260..702731)	Theileria parva strain Muguga	3501745
TpMuguga_02g00353	mRNA	TpMuguga_02g00353	NC_007345.1	702844	704571	D	TpMuguga_02g00353	join(702844..703489,703519..703704,703806..704105,704166..704571)	Theileria parva strain Muguga	3501746
TpMuguga_02g00354	mRNA	TpMuguga_02g00354	NC_007345.1	704747	706546	D	TpMuguga_02g00354	join(704747..705012,705056..705203,705358..705585,705615..705716,705750..705970,706000..706180,706256..706546)	Theileria parva strain Muguga	3501747
TpMuguga_02g00355	mRNA	Pelo	NC_007345.1	706596	708201	R	TpMuguga_02g00355	complement(join(706596..706910,706952..707030,707077..707142,707175..707215,707246..707347,707381..707506,707537..707614,707647..707703,707735..707809,707841..707919,707954..708201))	Theileria parva strain Muguga	3501748
TpMuguga_02g00356	mRNA	PAM18	NC_007345.1	708172	708777	D	TpMuguga_02g00356	join(708172..708552,708586..708659,708694..708777)	Theileria parva strain Muguga	3501877
TpMuguga_02g00357	mRNA	TpMuguga_02g00357	NC_007345.1	708781	709568	R	TpMuguga_02g00357	complement(join(708781..709045,709079..709193,709223..709408,709447..709568))	Theileria parva strain Muguga	3501878
TpMuguga_02g00358	mRNA	pcid2	NC_007345.1	709507	711445	D	TpMuguga_02g00358	join(709507..709816,709851..710014,710044..710146,710209..710350,710382..710425,710456..710505,710536..710629,710657..710718,710760..710837,710867..710936,710967..711058,711100..711208,711245..711445)	Theileria parva strain Muguga	3501879
TpMuguga_02g00359	mRNA	TpMuguga_02g00359	NC_007345.1	711428	712102	R	TpMuguga_02g00359	complement(join(711428..711641,711677..711754,711787..712102))	Theileria parva strain Muguga	3501880
TpMuguga_02g00360	mRNA	TpMuguga_02g00360	NC_007345.1	712179	715102	D	TpMuguga_02g00360	join(712179..714310,714343..714387,714420..715102)	Theileria parva strain Muguga	3501881
TpMuguga_02g00361	mRNA	LON1	NC_007345.1	715254	718792	D	TpMuguga_02g00361	715254..718792	Theileria parva strain Muguga	3502298
TpMuguga_02g00362	mRNA	SmB	NC_007345.1	718909	719717	R	TpMuguga_02g00362	complement(join(718909..719232,719345..719717))	Theileria parva strain Muguga	3502299
TpMuguga_02g00363	mRNA	TpMuguga_02g00363	NC_007345.1	719720	722862	R	TpMuguga_02g00363	complement(join(719720..719991,720031..720073,720105..720184,720218..720475,720508..722469,722533..722631,722664..>722862))	Theileria parva strain Muguga	3502300
TpMuguga_02g00364	mRNA	dph1	NC_007345.1	723316	724921	D	TpMuguga_02g00364	join(723316..723656,723700..724218,724253..724498,724540..724702,724733..724921)	Theileria parva strain Muguga	3502301
TpMuguga_02g00365	mRNA	TpMuguga_02g00365	NC_007345.1	724960	726500	R	TpMuguga_02g00365	complement(join(724960..725635,725669..726199,726233..726500))	Theileria parva strain Muguga	3502302
TpMuguga_02g00366	mRNA	TpMuguga_02g00366	NC_007345.1	726551	728100	D	TpMuguga_02g00366	join(726551..726978,727180..727956,727990..728100)	Theileria parva strain Muguga	3502303
TpMuguga_02g02160	mRNA	TpMuguga_02g02160	NC_007345.1	728044	729882	R	TpMuguga_02g02160	complement(join(728044..728236,728266..729438,729501..729882))	Theileria parva strain Muguga	86047692
TpMuguga_02g02570	mRNA	TpMuguga_02g02570	NC_007345.1	729939	731592	R	TpMuguga_02g02570	complement(join(729939..730480,730512..730590,730621..730721,730771..730904,730953..731592))	Theileria parva strain Muguga	3502147
TpMuguga_02g00369	mRNA	Dusp12	NC_007345.1	731727	732928	D	TpMuguga_02g00369	join(<731727..732148,732180..732230,732275..732928)	Theileria parva strain Muguga	3502148
TpMuguga_02g00370	mRNA	RPP2A	NC_007345.1	733107	733807	R	TpMuguga_02g00370	complement(join(733107..733257,733290..733380,733413..733602,733729..733807))	Theileria parva strain Muguga	3502149
TpMuguga_02g00371	mRNA	TpMuguga_02g00371	NC_007345.1	733851	734438	D	TpMuguga_02g00371	733851..734438	Theileria parva strain Muguga	3502150
TpMuguga_02g00372	mRNA	CPSF30	NC_007345.1	734461	735124	R	TpMuguga_02g00372	complement(join(734461..734630,734662..735124))	Theileria parva strain Muguga	3502151
TpMuguga_02g00373	mRNA	ung	NC_007345.1	735207	736329	D	TpMuguga_02g00373	join(735207..735480,735517..735648,735677..735740,735801..735980,736010..736085,736122..736220,736250..>736329)	Theileria parva strain Muguga	3502152
TpMuguga_02g00374	mRNA	SF3B4	NC_007345.1	736343	737532	R	TpMuguga_02g00374	complement(join(736343..736531,736566..736709,736740..736890,736920..737018,737048..737175,737207..737317,737415..737532))	Theileria parva strain Muguga	3501534
TpMuguga_02g00375	mRNA	TpMuguga_02g00375	NC_007345.1	737605	739733	R	TpMuguga_02g00375	complement(join(737605..737972,738006..738049,738149..739733))	Theileria parva strain Muguga	3501535
TpMuguga_02g00376	mRNA	TpMuguga_02g00376	NC_007345.1	739734	741968	R	TpMuguga_02g00376	complement(join(739734..740249,740282..740361,740393..740502,740534..740647,740677..741170,741200..741968))	Theileria parva strain Muguga	3501537
TpMuguga_02g00377	mRNA	TpMuguga_02g00377	NC_007345.1	741972	743029	D	TpMuguga_02g00377	join(741972..742568,742600..>743029)	Theileria parva strain Muguga	3501538
TpMuguga_02g00378	mRNA	Prkaca	NC_007345.1	743294	744686	D	TpMuguga_02g00378	join(743294..743390,743432..743584,743616..744258,744288..744447,744479..744686)	Theileria parva strain Muguga	3501539
TpMuguga_02g00379	mRNA	TpMuguga_02g00379	NC_007345.1	744897	748346	D	TpMuguga_02g00379	744897..748346	Theileria parva strain Muguga	3501980
TpMuguga_02g00380	mRNA	Trub1	NC_007345.1	748336	749436	R	TpMuguga_02g00380	complement(join(<748336..748455,748486..748593,748625..748737,748769..748877,748908..748969,749010..749066,749097..749146,749179..749436))	Theileria parva strain Muguga	3501981
TpMuguga_02g00965	mRNA	TpMuguga_02g00965	NC_007345.1	749413	750185	R	TpMuguga_02g00965	complement(join(749413..749659,749709..749793,749859..749916,749950..750185))	Theileria parva strain Muguga	3501982
TpMuguga_02g00381	mRNA	Lsm14b	NC_007345.1	750231	751862	D	TpMuguga_02g00381	join(750231..750897,750937..751071,751106..751590,751632..751862)	Theileria parva strain Muguga	3501983
TpMuguga_02g00382	mRNA	TpMuguga_02g00382	NC_007345.1	752057	755937	D	TpMuguga_02g00382	join(752057..755724,755790..755937)	Theileria parva strain Muguga	3501984
TpMuguga_02g00383	mRNA	TpMuguga_02g00383	NC_007345.1	755982	757623	R	TpMuguga_02g00383	complement(755982..>757623)	Theileria parva strain Muguga	3501985
TpMuguga_02g00384	mRNA	TpMuguga_02g00384	NC_007345.1	757702	759313	R	TpMuguga_02g00384	complement(join(<757702..757979,758009..758437,758468..759313))	Theileria parva strain Muguga	3501986
TpMuguga_02g02640	mRNA	TpMuguga_02g02640	NC_007345.1	759550	762834	D	TpMuguga_02g02640	join(759550..759664,759700..760484,760515..760796,760826..761328,761359..761401,761431..761750,761780..761903,761933..762189,762218..762350,762379..762460,762491..762580,762611..762671,762703..762834)	Theileria parva strain Muguga	3502026
TpMuguga_02g00388	mRNA	ABCC13	NC_007345.1	763413	768035	D	TpMuguga_02g00388	join(<763413..763951,764054..>768035)	Theileria parva strain Muguga	3502029
TpMuguga_02g00389	mRNA	TpMuguga_02g00389	NC_007345.1	768004	770297	R	TpMuguga_02g00389	complement(join(768004..768090,768121..768157,768187..768254,768284..768345,768378..768532,768564..768755,768787..768894,768927..769302,769374..769557,769600..770297))	Theileria parva strain Muguga	3502030
TpMuguga_02g00390	mRNA	ABCC4	NC_007345.1	770361	775055	D	TpMuguga_02g00390	770361..775055	Theileria parva strain Muguga	3502031
TpMuguga_02g00391	mRNA	ABCC4	NC_007345.1	775625	780416	D	TpMuguga_02g00391	775625..780416	Theileria parva strain Muguga	3502042
TpMuguga_02g00392	mRNA	rplT	NC_007345.1	780551	780946	R	TpMuguga_02g00392	complement(join(<780551..780769,780800..>780946))	Theileria parva strain Muguga	3502043
TpMuguga_02g00393	mRNA	SEC62	NC_007345.1	781110	782821	D	TpMuguga_02g00393	join(781110..781277,781333..781416,781478..781561,781592..781699,781731..781767,781801..781940,781970..782050,782081..782276,782306..782413,782443..782544,782576..782658,782690..782821)	Theileria parva strain Muguga	3502044
TpMuguga_02g00394	mRNA	TpMuguga_02g00394	NC_007345.1	782899	783795	D	TpMuguga_02g00394	join(<782899..783238,783269..783413,783597..>783795)	Theileria parva strain Muguga	3502045
TpMuguga_02g00395	mRNA	TpMuguga_02g00395	NC_007345.1	783590	785236	R	TpMuguga_02g00395	complement(join(783590..783781,783812..783884,783914..784186,784217..784454,784486..784605,784785..785236))	Theileria parva strain Muguga	3502046
TpMuguga_02g00396	mRNA	TpMuguga_02g00396	NC_007345.1	785481	786214	R	TpMuguga_02g00396	complement(join(785481..785671,785706..785801,785856..786214))	Theileria parva strain Muguga	3502047
TpMuguga_02g00397	mRNA	TpMuguga_02g00397	NC_007345.1	786257	788106	D	TpMuguga_02g00397	join(786257..786853,786931..787165,787223..787399,787525..787678,787708..787842,787872..788106)	Theileria parva strain Muguga	3502215
TpMuguga_02g00398	mRNA	TpMuguga_02g00398	NC_007345.1	788195	789724	D	TpMuguga_02g00398	788195..789724	Theileria parva strain Muguga	3502216
TpMuguga_02g00399	mRNA	CPK2	NC_007345.1	789843	793858	R	TpMuguga_02g00399	complement(join(789843..789957,790062..790143,790173..790284,790423..791339,791575..793858))	Theileria parva strain Muguga	3502217
TpMuguga_02g00400	mRNA	TpMuguga_02g00400	NC_007345.1	793929	794472	D	TpMuguga_02g00400	793929..794472	Theileria parva strain Muguga	3502218
TpMuguga_02g00401	mRNA	Osbpl1a	NC_007345.1	794794	799079	D	TpMuguga_02g00401	join(794794..794977,795010..795113,795310..796649,796986..797285,797415..797519,797631..797824,797965..798139,798340..798650,798749..798851,798969..799079)	Theileria parva strain Muguga	3502219
TpMuguga_02g00402	mRNA	ORC4	NC_007345.1	799056	801090	D	TpMuguga_02g00402	join(799056..799986,800164..800310,800404..800586,800760..800911,800987..801090)	Theileria parva strain Muguga	3502153
TpMuguga_02g02175	mRNA	TpMuguga_02g02175	NC_007345.1	801087	801599	D	TpMuguga_02g02175	801087..801599	Theileria parva strain Muguga	86047693
TpMuguga_02g00403	mRNA	TpMuguga_02g00403	NC_007345.1	801602	803960	R	TpMuguga_02g00403	complement(801602..803960)	Theileria parva strain Muguga	3502154
TpMuguga_02g00404	mRNA	TpMuguga_02g00404	NC_007345.1	804252	806429	R	TpMuguga_02g00404	complement(join(804252..804457,804513..804753,804835..804947,804977..805043,805154..805239,805269..805451,805566..805674,805760..805924,806006..806173,806222..806429))	Theileria parva strain Muguga	3502155
TpMuguga_02g00405	mRNA	TpMuguga_02g00405	NC_007345.1	806496	812406	D	TpMuguga_02g00405	join(806496..806827,806857..806959,807013..807391,807428..807603,807636..807852,807916..808540,808588..808665,808793..808923,809027..809074,809104..809163,809255..809696,809945..810942,811026..812406)	Theileria parva strain Muguga	3502156
TpMuguga_02g00406	mRNA	TpMuguga_02g00406	NC_007345.1	812384	813357	D	TpMuguga_02g00406	812384..813357	Theileria parva strain Muguga	3502157
TpMuguga_02g00407	mRNA	TpMuguga_02g00407	NC_007345.1	813438	814181	R	TpMuguga_02g00407	complement(<813438..>814181)	Theileria parva strain Muguga	3502158
TpMuguga_02g00408	mRNA	TpMuguga_02g00408	NC_007345.1	814325	815359	R	TpMuguga_02g00408	complement(join(814325..814566,814617..814724,814837..>815359))	Theileria parva strain Muguga	3501994
TpMuguga_02g00409	mRNA	CDC40	NC_007345.1	815470	817914	R	TpMuguga_02g00409	complement(<815470..817914)	Theileria parva strain Muguga	3501995
TpMuguga_02g02560	mRNA	TpMuguga_02g02560	NC_007345.1	817986	821808	D	TpMuguga_02g02560	join(817986..820261,820725..820998,821076..821173,821279..821512,821642..821808)	Theileria parva strain Muguga	3501997
TpMuguga_02g00412	mRNA	TpMuguga_02g00412	NC_007345.1	822260	824427	R	TpMuguga_02g00412	complement(join(822260..823176,823241..824005,824184..>824427))	Theileria parva strain Muguga	3501998
TpMuguga_02g00413	mRNA	CTNNBL1	NC_007345.1	824740	828694	R	TpMuguga_02g00413	complement(join(824740..824981,825545..825862,825892..825948,826018..826103,826238..826390,826631..826680,826779..827095,827208..827262,827293..827387,828105..828244,828374..828694))	Theileria parva strain Muguga	3501999
TpMuguga_02g00414	mRNA	TpMuguga_02g00414	NC_007345.1	828688	832267	D	TpMuguga_02g00414	join(828688..831104,831922..832267)	Theileria parva strain Muguga	3501987
TpMuguga_02g00415	mRNA	TpMuguga_02g00415	NC_007345.1	832268	833391	D	TpMuguga_02g00415	832268..833391	Theileria parva strain Muguga	3501988
TpMuguga_02g00416	mRNA	APS2	NC_007345.1	834189	834920	R	TpMuguga_02g00416	complement(join(834189..834605,834686..834920))	Theileria parva strain Muguga	3501989
TpMuguga_02g00417	mRNA	TpMuguga_02g00417	NC_007345.1	835127	836622	D	TpMuguga_02g00417	join(835127..835512,836288..836622)	Theileria parva strain Muguga	3501990
TpMuguga_02g00418	mRNA	TpMuguga_02g00418	NC_007345.1	836670	839939	D	TpMuguga_02g00418	join(836670..837329,838357..839939)	Theileria parva strain Muguga	3501991
TpMuguga_02g00419	mRNA	TpMuguga_02g00419	NC_007345.1	840110	841439	D	TpMuguga_02g00419	join(<840110..840164,840466..>841439)	Theileria parva strain Muguga	3501992
TpMuguga_02g00420	mRNA	TpMuguga_02g00420	NC_007345.1	842556	847895	R	TpMuguga_02g00420	complement(842556..847895)	Theileria parva strain Muguga	3501993
TpMuguga_02g00421	mRNA	TpMuguga_02g00421	NC_007345.1	847883	849958	R	TpMuguga_02g00421	complement(847883..849958)	Theileria parva strain Muguga	3501844
TpMuguga_02g00422	mRNA	ndk	NC_007345.1	850039	850734	D	TpMuguga_02g00422	join(850039..850426,850528..850734)	Theileria parva strain Muguga	3501845
TpMuguga_02g00423	mRNA	srpr	NC_007345.1	851134	853448	R	TpMuguga_02g00423	complement(join(851134..852662,853005..853100,853200..853448))	Theileria parva strain Muguga	3501846
TpMuguga_02g00424	mRNA	TpMuguga_02g00424	NC_007345.1	853587	856388	D	TpMuguga_02g00424	853587..856388	Theileria parva strain Muguga	3501847
TpMuguga_02g00425	mRNA	TpMuguga_02g00425	NC_007345.1	856492	859062	R	TpMuguga_02g00425	complement(join(<856492..857015,857087..857161,858042..858812,858892..858951,858999..>859062))	Theileria parva strain Muguga	3501848
TpMuguga_02g00426	mRNA	TpMuguga_02g00426	NC_007345.1	859416	859920	D	TpMuguga_02g00426	join(859416..859624,859704..859920)	Theileria parva strain Muguga	3501849
TpMuguga_02g00427	mRNA	TpMuguga_02g00427	NC_007345.1	859874	860628	R	TpMuguga_02g00427	complement(859874..860628)	Theileria parva strain Muguga	3501850
TpMuguga_02g00428	mRNA	TpMuguga_02g00428	NC_007345.1	860681	861770	D	TpMuguga_02g00428	join(860681..860948,861155..861770)	Theileria parva strain Muguga	3501567
TpMuguga_02g00429	mRNA	tma22	NC_007345.1	861808	862784	R	TpMuguga_02g00429	complement(join(861808..861962,861993..862096,862171..862784))	Theileria parva strain Muguga	3501568
TpMuguga_02g00430	mRNA	AFG3L2	NC_007345.1	862786	865882	R	TpMuguga_02g00430	complement(join(<862786..864468,864690..864902,864976..865882))	Theileria parva strain Muguga	3501569
TpMuguga_02g00431	mRNA	ddx55	NC_007345.1	865934	868744	D	TpMuguga_02g00431	join(865934..867884,867915..868007,868037..868106,868183..868417,868448..868553,868646..>868744)	Theileria parva strain Muguga	3501570
TpMuguga_02g00432	mRNA	TpMuguga_02g00432	NC_007345.1	869271	870649	D	TpMuguga_02g00432	join(<869271..869978,870011..870490,870522..870649)	Theileria parva strain Muguga	3501571
TpMuguga_02g00433	mRNA	UBA5	NC_007345.1	870650	871912	D	TpMuguga_02g00433	join(870650..871011,871104..871912)	Theileria parva strain Muguga	3501572
TpMuguga_02g00434	mRNA	TpMuguga_02g00434	NC_007345.1	871908	873134	D	TpMuguga_02g00434	join(871908..872216,872338..872411,872451..872553,872586..872668,872768..873134)	Theileria parva strain Muguga	3501416
TpMuguga_02g00435	mRNA	hisS	NC_007345.1	873220	875216	R	TpMuguga_02g00435	complement(join(<873220..873291,873321..873434,873465..873669,873712..873787,873824..873932,873997..874060,874100..874386,874447..874508,874541..874775,874809..874901,874972..875100,875131..875216))	Theileria parva strain Muguga	3501417
TpMuguga_02g00436	mRNA	eif2a	NC_007345.1	875217	878172	R	TpMuguga_02g00436	complement(875217..878172)	Theileria parva strain Muguga	3501418
TpMuguga_02g00437	mRNA	udp	NC_007345.1	878463	879358	R	TpMuguga_02g00437	complement(878463..>879358)	Theileria parva strain Muguga	3501419
TpMuguga_02g00438	mRNA	udp	NC_007345.1	879777	880628	R	TpMuguga_02g00438	complement(879777..880628)	Theileria parva strain Muguga	3501420
TpMuguga_02g00439	mRNA	TpMuguga_02g00439	NC_007345.1	880677	881555	D	TpMuguga_02g00439	join(880677..880698,880731..881555)	Theileria parva strain Muguga	3501421
TpMuguga_02g00440	mRNA	udp	NC_007345.1	881705	882596	R	TpMuguga_02g00440	complement(881705..882596)	Theileria parva strain Muguga	3501422
TpMuguga_02g00441	mRNA	ppan	NC_007345.1	882597	884141	R	TpMuguga_02g00441	complement(join(882597..882894,882927..882997,883030..883379,883414..884141))	Theileria parva strain Muguga	3502220
TpMuguga_02g00442	mRNA	TpMuguga_02g00442	NC_007345.1	884213	885124	R	TpMuguga_02g00442	complement(join(884213..884731,884764..>885124))	Theileria parva strain Muguga	3502221
TpMuguga_02g00443	mRNA	ssb1	NC_007345.1	885151	887106	D	TpMuguga_02g00443	join(885151..885537,885571..885642,885674..885813,885843..885945,885977..886072,886107..886289,886330..886610,886640..886707,886740..886831,886862..887106)	Theileria parva strain Muguga	3502222
TpMuguga_02g00444	mRNA	Dph6	NC_007345.1	887107	888593	D	TpMuguga_02g00444	join(887107..887482,887517..887605,887647..887723,887755..887873,887904..887965,888000..888091,888124..888286,888319..888593)	Theileria parva strain Muguga	3502223
TpMuguga_02g00445	mRNA	VHA-F	NC_007345.1	888611	889409	D	TpMuguga_02g00445	join(888611..889002,889064..889145,889180..>889409)	Theileria parva strain Muguga	3502224
TpMuguga_02g00446	mRNA	Zdhhc15	NC_007345.1	889417	890718	R	TpMuguga_02g00446	complement(join(889417..889634,889665..889911,889942..>890718))	Theileria parva strain Muguga	3502271
TpMuguga_02g00447	mRNA	TpMuguga_02g00447	NC_007345.1	890959	892696	R	TpMuguga_02g00447	complement(join(<890959..891057,891090..891236,891279..891611,891645..891873,891903..891984,892016..892316,892350..892412,892461..892696))	Theileria parva strain Muguga	3502272
TpMuguga_02g02115	mRNA	TpMuguga_02g02115	NC_007345.1	892750	894362	R	TpMuguga_02g02115	complement(join(892750..892903,892934..893101,893133..893242,893274..893358,893390..893554,893587..893901,893932..894158,894188..894362))	Theileria parva strain Muguga	86047690
TpMuguga_02g00448	mRNA	Tbl1xr1	NC_007345.1	894345	896314	D	TpMuguga_02g00448	join(894345..894560,894605..894948,895025..895238,895268..896314)	Theileria parva strain Muguga	3502273
TpMuguga_02g00449	mRNA	TpMuguga_02g00449	NC_007345.1	896496	899080	D	TpMuguga_02g00449	join(896496..898777,898810..899080)	Theileria parva strain Muguga	3502274
TpMuguga_02g00450	mRNA	DTC	NC_007345.1	899081	900356	D	TpMuguga_02g00450	899081..900356	Theileria parva strain Muguga	3502275
TpMuguga_02g00451	mRNA	obg	NC_007345.1	900293	901632	R	TpMuguga_02g00451	complement(join(900293..901051,901082..901632))	Theileria parva strain Muguga	3502276
TpMuguga_02g02660	mRNA	TpMuguga_02g02660	NC_007345.1	901645	903211	D	TpMuguga_02g02660	join(901645..902015,902055..902274,902314..902393,902512..902678,902710..902840,902878..903000,903031..903104,903137..903211)	Theileria parva strain Muguga	3502277
TpMuguga_02g02510	mRNA	TpMuguga_02g02510	NC_007345.1	903818	906463	D	TpMuguga_02g02510	join(903818..904946,904996..905086,905121..905387,905421..905717,905779..905953,906069..906463)	Theileria parva strain Muguga	3502372
TpMuguga_02g02120	mRNA	PAN2	NC_007345.1	906473	910486	R	TpMuguga_02g02120	complement(join(<906473..906560,906774..907094,907126..907224,907258..907778,907903..910486))	Theileria parva strain Muguga	3502373
TpMuguga_02g02135	mRNA	sand	NC_007345.1	910758	912537	D	TpMuguga_02g02135	join(910758..910965,911040..911074,911108..911304,911392..911621,911652..911725,911760..911853,911885..912266,912354..912537)	Theileria parva strain Muguga	3502375
TpMuguga_02g00460	mRNA	ABCB25	NC_007345.1	912720	915215	R	TpMuguga_02g00460	complement(join(912720..912946,913019..913228,913271..913373,913447..915215))	Theileria parva strain Muguga	3501466
TpMuguga_02g02110	mRNA	TpMuguga_02g02110	NC_007345.1	915885	916980	R	TpMuguga_02g02110	complement(join(915885..916036,916068..916125,916155..916518,916545..916873,916914..>916980))	Theileria parva strain Muguga	3501467
TpMuguga_02g02105	mRNA	TpMuguga_02g02105	NC_007345.1	916989	917877	R	TpMuguga_02g02105	complement(join(<916989..917020,917081..917152,917212..917385,917497..917645,917678..917877))	Theileria parva strain Muguga	86047689
TpMuguga_02g00462	mRNA	TpMuguga_02g00462	NC_007345.1	918551	921515	D	TpMuguga_02g00462	join(918551..920365,920418..920648,920741..921515)	Theileria parva strain Muguga	3501468
TpMuguga_02g00463	mRNA	rcd1	NC_007345.1	921761	923015	D	TpMuguga_02g00463	join(921761..922094,922129..922244,922276..922382,922413..922508,922617..922855,922886..923015)	Theileria parva strain Muguga	3501469
TpMuguga_02g02480	mRNA	TpMuguga_02g02480	NC_007345.1	922592	923436	R	TpMuguga_02g02480	complement(922592..923436)	Theileria parva strain Muguga	86047724
TpMuguga_02g00464	mRNA	TpMuguga_02g00464	NC_007345.1	923513	925397	R	TpMuguga_02g00464	complement(join(923513..925037,925197..925397))	Theileria parva strain Muguga	3501470
TpMuguga_02g00465	mRNA	TpMuguga_02g00465	NC_007345.1	925603	926951	R	TpMuguga_02g00465	complement(925603..926951)	Theileria parva strain Muguga	3501523
TpMuguga_02g00466	mRNA	TpMuguga_02g00466	NC_007345.1	926915	928463	R	TpMuguga_02g00466	complement(<926915..928463)	Theileria parva strain Muguga	3501524
TpMuguga_02g00467	mRNA	TOP2	NC_007345.1	928453	932879	R	TpMuguga_02g00467	complement(join(928453..930859,930922..931632,931701..932879))	Theileria parva strain Muguga	3501525
TpMuguga_02g00468	mRNA	TpMuguga_02g00468	NC_007345.1	933160	935643	R	TpMuguga_02g00468	complement(join(<933160..934947,934977..935126,935167..935433,935478..935643))	Theileria parva strain Muguga	3501526
TpMuguga_02g02390	mRNA	TpMuguga_02g02390	NC_007345.1	936039	936596	D	TpMuguga_02g02390	join(936039..936238,936271..936358,936403..936596)	Theileria parva strain Muguga	86047716
TpMuguga_02g00469	mRNA	POLD2	NC_007345.1	936584	938504	D	TpMuguga_02g00469	join(936584..936881,936939..937028,937070..937186,937227..937362,937403..937475,937509..937580,937649..937716,937786..937910,937996..938065,938095..938155,938261..938504)	Theileria parva strain Muguga	3501527
TpMuguga_02g00470	mRNA	TpMuguga_02g00470	NC_007345.1	938505	939899	D	TpMuguga_02g00470	join(938505..938868,938930..939899)	Theileria parva strain Muguga	3501528
TpMuguga_02g00471	mRNA	TYW5	NC_007345.1	939651	940981	R	TpMuguga_02g00471	complement(join(939651..939903,939974..940118,940154..940252,940285..940700,940779..940981))	Theileria parva strain Muguga	3501926
TpMuguga_02g00472	mRNA	TpMuguga_02g00472	NC_007345.1	940965	941702	R	TpMuguga_02g00472	complement(<940965..>941702)	Theileria parva strain Muguga	3501927
TpMuguga_02g00473	mRNA	TpMuguga_02g00473	NC_007345.1	942580	942834	D	TpMuguga_02g00473	join(<942580..942708,942763..>942834)	Theileria parva strain Muguga	3501928
TpMuguga_02g00474	mRNA	TpMuguga_02g00474	NC_007345.1	942956	943723	D	TpMuguga_02g00474	join(<942956..943031,943172..943347,943407..943508,943550..>943723)	Theileria parva strain Muguga	3501929
TpMuguga_02g00475	mRNA	dgkA	NC_007345.1	944167	945922	D	TpMuguga_02g00475	join(944167..944328,944425..944563,944592..944708,944748..944820,944851..944974,945009..945149,945210..945449,945541..945639,945698..945793,945824..945922)	Theileria parva strain Muguga	3501930
TpMuguga_02g00476	mRNA	clf1	NC_007345.1	945965	948478	D	TpMuguga_02g00476	join(<945965..945994,946029..946162,946229..946336,946401..946625,946707..946805,946840..947515,947581..947754,947825..948028,948067..948478)	Theileria parva strain Muguga	3501931
TpMuguga_02g00477	mRNA	TpMuguga_02g00477	NC_007345.1	948641	950352	D	TpMuguga_02g00477	948641..950352	Theileria parva strain Muguga	3501932
TpMuguga_02g00478	mRNA	TpMuguga_02g00478	NC_007345.1	950403	951084	R	TpMuguga_02g00478	complement(join(950403..950546,950579..950635,950666..950743,950774..950827,950862..950926,950980..951000,951036..>951084))	Theileria parva strain Muguga	3501933
TpMuguga_02g02350	mRNA	TpMuguga_02g02350	NC_007345.1	951149	951948	R	TpMuguga_02g02350	complement(join(<951149..951439,951481..951709,951754..951948))	Theileria parva strain Muguga	86047712
TpMuguga_02g00479	mRNA	TpMuguga_02g00479	NC_007345.1	951964	953139	D	TpMuguga_02g00479	951964..953139	Theileria parva strain Muguga	3501934
TpMuguga_02g00480	mRNA	SF3B5	NC_007345.1	953071	953605	R	TpMuguga_02g00480	complement(join(953071..953221,953262..953385,953440..953605))	Theileria parva strain Muguga	3501935
TpMuguga_02g00481	mRNA	TpMuguga_02g00481	NC_007345.1	953652	958188	D	TpMuguga_02g00481	join(953652..953907,953977..954082,954114..956538,956660..956756,956823..957009,957072..957190,957222..957389,957419..957556,957588..957723,957761..>958188)	Theileria parva strain Muguga	3501936
TpMuguga_02g00482	mRNA	TpMuguga_02g00482	NC_007345.1	958458	958882	D	TpMuguga_02g00482	join(<958458..958694,958727..958882)	Theileria parva strain Muguga	3502067
TpMuguga_02g00483	mRNA	TpMuguga_02g00483	NC_007345.1	958885	960286	R	TpMuguga_02g00483	complement(join(958885..959029,959100..960286))	Theileria parva strain Muguga	3502068
TpMuguga_02g00484	mRNA	TpMuguga_02g00484	NC_007345.1	960350	961262	D	TpMuguga_02g00484	join(<960350..960937,960972..961262)	Theileria parva strain Muguga	3502069
TpMuguga_02g00485	mRNA	TpMuguga_02g00485	NC_007345.1	961288	963163	R	TpMuguga_02g00485	complement(join(961288..961571,961604..961824,961924..963163))	Theileria parva strain Muguga	3502070
TpMuguga_02g00486	mRNA	TpMuguga_02g00486	NC_007345.1	963190	964310	D	TpMuguga_02g00486	join(963190..963397,963498..963797,963876..963937,963986..964310)	Theileria parva strain Muguga	3502071
TpMuguga_02g00487	mRNA	Rps6	NC_007345.1	964508	965328	D	TpMuguga_02g00487	964508..965328	Theileria parva strain Muguga	3502072
TpMuguga_02g00488	mRNA	ATP6V1D	NC_007345.1	965456	966686	D	TpMuguga_02g00488	join(965456..965596,965641..965758,965825..966020,966077..966180,966247..966312,966347..966426,966529..966686)	Theileria parva strain Muguga	3502073
TpMuguga_02g00489	mRNA	TpMuguga_02g00489	NC_007345.1	966714	968174	D	TpMuguga_02g00489	join(966714..967175,967247..968174)	Theileria parva strain Muguga	3502343
TpMuguga_02g00490	mRNA	Sec63	NC_007345.1	968318	970627	D	TpMuguga_02g00490	join(968318..968713,968802..969001,969076..969152,969195..969310,969377..970627)	Theileria parva strain Muguga	3502344
TpMuguga_02g00491	mRNA	TpMuguga_02g00491	NC_007345.1	970785	971720	D	TpMuguga_02g00491	<970785..>971720	Theileria parva strain Muguga	3502345
TpMuguga_02g00492	mRNA	TpMuguga_02g00492	NC_007345.1	971757	973159	R	TpMuguga_02g00492	complement(971757..973159)	Theileria parva strain Muguga	3502346
TpMuguga_02g00493	mRNA	tmem184A	NC_007345.1	973244	974684	D	TpMuguga_02g00493	join(973244..973552,973648..974684)	Theileria parva strain Muguga	3502347
TpMuguga_02g00494	mRNA	pkaR	NC_007345.1	974685	976230	R	TpMuguga_02g00494	complement(join(974685..974864,974895..974959,975030..975352,975404..975471,975552..975639,975670..975728,975795..975863,975898..975987,976054..976230))	Theileria parva strain Muguga	3502348
TpMuguga_02g00495	mRNA	TpMuguga_02g00495	NC_007345.1	976716	977561	D	TpMuguga_02g00495	join(976716..977018,977111..977150,977181..977379,977433..977561)	Theileria parva strain Muguga	3501960
TpMuguga_02g00496	mRNA	TpMuguga_02g00496	NC_007345.1	977671	978758	R	TpMuguga_02g00496	complement(join(<977671..977918,978005..978758))	Theileria parva strain Muguga	3501961
TpMuguga_02g00497	mRNA	TpMuguga_02g00497	NC_007345.1	980245	982068	D	TpMuguga_02g00497	<980245..>982068	Theileria parva strain Muguga	3501962
TpMuguga_02g00498	mRNA	dbp4	NC_007345.1	982241	984410	R	TpMuguga_02g00498	complement(join(<982241..983673,983734..984028,984081..984410))	Theileria parva strain Muguga	3501963
TpMuguga_02g00499	mRNA	TpMuguga_02g00499	NC_007345.1	984774	987200	D	TpMuguga_02g00499	join(984774..985056,985097..985188,985243..985821,985925..987200)	Theileria parva strain Muguga	3501964
TpMuguga_02g00500	mRNA	slc20a1b	NC_007345.1	987322	990008	R	TpMuguga_02g00500	complement(987322..990008)	Theileria parva strain Muguga	3501965
TpMuguga_02g00501	mRNA	TpMuguga_02g00501	NC_007345.1	989862	990259	D	TpMuguga_02g00501	join(<989862..990068,990218..>990259)	Theileria parva strain Muguga	3501966
TpMuguga_02g00502	mRNA	TpMuguga_02g00502	NC_007345.1	990453	990816	D	TpMuguga_02g00502	join(<990453..990663,990728..>990816)	Theileria parva strain Muguga	3501863
TpMuguga_02g00503	mRNA	TpMuguga_02g00503	NC_007345.1	990931	999477	D	TpMuguga_02g00503	<990931..>999477	Theileria parva strain Muguga	3501864
TpMuguga_02g00504	mRNA	TpMuguga_02g00504	NC_007345.1	999560	1003397	R	TpMuguga_02g00504	complement(join(999560..999669,999704..1003058,1003130..1003397))	Theileria parva strain Muguga	3501865
TpMuguga_02g00505	mRNA	cpr-1	NC_007345.1	1003388	1004973	R	TpMuguga_02g00505	complement(join(1003388..1003517,1003548..1003664,1003838..1004024,1004054..1004079,1004168..1004973))	Theileria parva strain Muguga	3501866
TpMuguga_02g02210	mRNA	TpMuguga_02g02210	NC_007345.1	1004976	1012806	R	TpMuguga_02g02210	complement(1004976..>1012806)	Theileria parva strain Muguga	3501867
TpMuguga_02g00508	mRNA	CBF5	NC_007345.1	1013446	1015302	D	TpMuguga_02g00508	join(1013446..1013807,1013925..1014201,1014266..1014330,1014395..1015302)	Theileria parva strain Muguga	3501869
TpMuguga_02g00509	mRNA	RECQL4A	NC_007345.1	1015324	1018342	R	TpMuguga_02g00509	complement(1015324..>1018342)	Theileria parva strain Muguga	3501685
TpMuguga_02g00510	mRNA	DTX3L	NC_007345.1	1018730	1019785	R	TpMuguga_02g00510	complement(<1018730..>1019785)	Theileria parva strain Muguga	3501686
TpMuguga_02g00511	mRNA	prp45	NC_007345.1	1020771	1022761	D	TpMuguga_02g00511	join(1020771..1020902,1021004..1021115,1021201..1021479,1021580..1022296,1022364..1022479,1022618..1022761)	Theileria parva strain Muguga	3501687
TpMuguga_02g00512	mRNA	TpMuguga_02g00512	NC_007345.1	1022541	1026921	R	TpMuguga_02g00512	complement(1022541..1026921)	Theileria parva strain Muguga	3501688
TpMuguga_02g00513	mRNA	TpMuguga_02g00513	NC_007345.1	1027174	1028550	R	TpMuguga_02g00513	complement(join(1027174..1027336,1027531..1028171,1028271..1028550))	Theileria parva strain Muguga	3501689
TpMuguga_02g00514	mRNA	CAJ1	NC_007345.1	1029654	1031360	D	TpMuguga_02g00514	join(1029654..1030259,1030291..1031360)	Theileria parva strain Muguga	3501690
TpMuguga_02g00515	mRNA	Alg13	NC_007345.1	1031334	1031977	R	TpMuguga_02g00515	complement(1031334..1031977)	Theileria parva strain Muguga	3501691
TpMuguga_02g00516	mRNA	crop	NC_007345.1	1032043	1033927	R	TpMuguga_02g00516	complement(join(1032043..1032422,1032503..1032620,1032717..1032879,1032954..1033049,1033081..1033192,1033312..1033364,1033445..1033708,1033755..1033927))	Theileria parva strain Muguga	3501692
TpMuguga_02g00517	mRNA	SKIV2L2	NC_007345.1	1033935	1037660	R	TpMuguga_02g00517	complement(join(<1033935..1034070,1034159..1034343,1034379..1034724,1034756..1034833,1034941..1035251,1035396..1035838,1035972..1037459,1037584..1037660))	Theileria parva strain Muguga	3501506
TpMuguga_02g00518	mRNA	TpMuguga_02g00518	NC_007345.1	1037662	1041589	R	TpMuguga_02g00518	complement(join(1037662..1037943,1038009..1038063,1038094..1038153,1038184..1038311,1038368..1038934,1038996..1040915,1040965..1041589))	Theileria parva strain Muguga	3501507
TpMuguga_02g00519	mRNA	TpMuguga_02g00519	NC_007345.1	1041580	1042174	R	TpMuguga_02g00519	complement(join(<1041580..1041838,1041870..>1042174))	Theileria parva strain Muguga	3501508
TpMuguga_02g00520	mRNA	TpMuguga_02g00520	NC_007345.1	1042247	1043686	R	TpMuguga_02g00520	complement(join(1042247..1042338,1042368..1042411,1042450..1042508,1042600..1042668,1042697..1042810,1042905..1043017,1043049..1043122,1043178..1043310,1043344..1043369,1043449..1043686))	Theileria parva strain Muguga	3501509
TpMuguga_02g02415	mRNA	MYOF	NC_007345.1	1043969	1048613	D	TpMuguga_02g02415	join(<1043969..1044355,1044467..1044802,1044886..1045021,1045102..1045452,1045542..1045876,1045951..1047244,1047349..>1048613)	Theileria parva strain Muguga	3501511
TpMuguga_02g02380	mRNA	TpMuguga_02g02380	NC_007345.1	1048752	1049411	R	TpMuguga_02g02380	complement(<1048752..>1049411)	Theileria parva strain Muguga	86047715
TpMuguga_02g00524	mRNA	ATP6	NC_007345.1	1049634	1054024	R	TpMuguga_02g00524	complement(join(1049634..1052308,1052464..1054024))	Theileria parva strain Muguga	3501513
TpMuguga_02g00525	mRNA	TpMuguga_02g00525	NC_007345.1	1054190	1057236	D	TpMuguga_02g00525	join(1054190..1054502,1054549..1054611,1055511..1056661,1056692..1056774,1056836..1056997,1057099..1057236)	Theileria parva strain Muguga	3501514
TpMuguga_02g00526	mRNA	TpMuguga_02g00526	NC_007345.1	1057814	1059719	R	TpMuguga_02g00526	complement(1057814..1059719)	Theileria parva strain Muguga	3501515
TpMuguga_02g00527	mRNA	TpMuguga_02g00527	NC_007345.1	1060822	1062471	R	TpMuguga_02g00527	complement(<1060822..>1062471)	Theileria parva strain Muguga	3501516
TpMuguga_02g00528	mRNA	TpMuguga_02g00528	NC_007345.1	1064013	1065785	D	TpMuguga_02g00528	join(<1064013..1064829,1064901..1065686,1065730..>1065785)	Theileria parva strain Muguga	3501477
TpMuguga_02g00529	mRNA	TpMuguga_02g00529	NC_007345.1	1065773	1066699	R	TpMuguga_02g00529	complement(join(1065773..1065933,1066029..1066125,1066165..1066220,1066270..1066335,1066403..1066699))	Theileria parva strain Muguga	3501478
TpMuguga_02g00530	mRNA	UFD1L	NC_007345.1	1066766	1068230	D	TpMuguga_02g00530	join(1066766..1067043,1067118..1067272,1067480..1067610,1067675..1067768,1067834..1068055,1068116..1068230)	Theileria parva strain Muguga	3501479
TpMuguga_02g00531	mRNA	TpMuguga_02g00531	NC_007345.1	1068338	1069099	D	TpMuguga_02g00531	join(1068338..1068473,1068540..1068596,1068629..1068713,1068900..1069099)	Theileria parva strain Muguga	3501480
TpMuguga_02g00532	mRNA	mcm2	NC_007345.1	1068881	1073130	R	TpMuguga_02g00532	complement(join(1068881..1069451,1069558..1070349,1070716..1071558,1071769..1072103,1072309..1072861,1073021..1073054,1073086..1073130))	Theileria parva strain Muguga	3501481
TpMuguga_02g00533	mRNA	TpMuguga_02g00533	NC_007345.1	1073226	1074569	R	TpMuguga_02g00533	complement(join(1073226..1073327,1073393..1073466,1073619..1073736,1073923..1074398,1074469..1074569))	Theileria parva strain Muguga	3502240
TpMuguga_02g00534	mRNA	TpMuguga_02g00534	NC_007345.1	1074765	1076141	R	TpMuguga_02g00534	complement(1074765..1076141)	Theileria parva strain Muguga	3502241
TpMuguga_02g02190	mRNA	TpMuguga_02g02190	NC_007345.1	1076513	1077125	R	TpMuguga_02g02190	complement(1076513..1077125)	Theileria parva strain Muguga	86047694
TpMuguga_02g02370	mRNA	TpMuguga_02g02370	NC_007345.1	1077043	1078138	D	TpMuguga_02g02370	1077043..1078138	Theileria parva strain Muguga	86047713
TpMuguga_02g00535	mRNA	TpMuguga_02g00535	NC_007345.1	1078469	1079922	D	TpMuguga_02g00535	1078469..>1079922	Theileria parva strain Muguga	3502242
TpMuguga_02g00536	mRNA	TpMuguga_02g00536	NC_007345.1	1080061	1082384	R	TpMuguga_02g00536	complement(join(1080061..1080117,1080177..1080312,1080341..1080577,1080643..1080739,1080776..1080817,1080848..1080955,1081093..1081285,1081321..1081327,1081358..1081409,1081453..1081508,1081605..1081695,1081742..1081839,1081902..1081959,1081990..1082023,1082094..1082203,1082268..>1082384))	Theileria parva strain Muguga	3502243
TpMuguga_02g00537	mRNA	TpMuguga_02g00537	NC_007345.1	1082603	1084222	D	TpMuguga_02g00537	join(1082603..1083677,1083758..1083885,1083983..>1084222)	Theileria parva strain Muguga	3502244
TpMuguga_02g00538	mRNA	TpMuguga_02g00538	NC_007345.1	1084333	1089447	R	TpMuguga_02g00538	complement(join(<1084333..1086017,1086166..1089061,1089208..1089447))	Theileria parva strain Muguga	3502245
TpMuguga_02g00539	mRNA	SF3B6	NC_007345.1	1089967	1090577	D	TpMuguga_02g00539	join(1089967..1090154,1090184..1090261,1090293..1090397,1090427..1090577)	Theileria parva strain Muguga	3502246
TpMuguga_02g00540	mRNA	TpMuguga_02g00540	NC_007345.1	1090558	1091542	R	TpMuguga_02g00540	complement(join(1090558..1090757,1090794..1091107,1091139..1091542))	Theileria parva strain Muguga	3502330
TpMuguga_02g02655	mRNA	TpMuguga_02g02655	NC_007345.1	1091592	1092969	D	TpMuguga_02g02655	join(1091592..1092774,1092871..1092969)	Theileria parva strain Muguga	86047736
TpMuguga_02g00541	mRNA	ileS	NC_007345.1	1093025	1096924	D	TpMuguga_02g00541	join(<1093025..1096543,1096669..1096802,1096834..>1096924)	Theileria parva strain Muguga	3502331
TpMuguga_02g00542	mRNA	Mpc1	NC_007345.1	1096974	1097373	R	TpMuguga_02g00542	complement(1096974..1097373)	Theileria parva strain Muguga	3502332
TpMuguga_02g00543	mRNA	TpMuguga_02g00543	NC_007345.1	1097510	1099204	R	TpMuguga_02g00543	complement(join(1097510..1098856,1098896..1099204))	Theileria parva strain Muguga	3502333
TpMuguga_02g00544	mRNA	RNU1	NC_007345.1	1099231	1100154	D	TpMuguga_02g00544	1099231..1100154	Theileria parva strain Muguga	3502334
TpMuguga_02g00545	mRNA	CYB5R3	NC_007345.1	1100155	1101655	D	TpMuguga_02g00545	join(1100155..1100544,1100577..1100777,1100848..1101655)	Theileria parva strain Muguga	3502335
TpMuguga_02g00546	mRNA	TpMuguga_02g00546	NC_007345.1	1101695	1102690	R	TpMuguga_02g00546	complement(join(1101695..1102130,1102198..1102340,1102412..1102690))	Theileria parva strain Muguga	3502167
TpMuguga_02g00547	mRNA	TpMuguga_02g00547	NC_007345.1	1102759	1104332	D	TpMuguga_02g00547	1102759..1104332	Theileria parva strain Muguga	3502168
TpMuguga_02g02490	mRNA	TpMuguga_02g02490	NC_007345.1	1104134	1104753	R	TpMuguga_02g02490	complement(join(1104134..1104315,1104417..1104464,1104499..1104583,1104619..1104753))	Theileria parva strain Muguga	86047725
TpMuguga_02g00548	mRNA	dbr1-a	NC_007345.1	1104773	1106417	D	TpMuguga_02g00548	join(1104773..1104842,1104895..1105169,1105337..1105458,1105487..1105572,1105635..1106098,1106189..>1106417)	Theileria parva strain Muguga	3502169
TpMuguga_02g00549	mRNA	TpMuguga_02g00549	NC_007345.1	1106476	1107425	R	TpMuguga_02g00549	complement(<1106476..1107425)	Theileria parva strain Muguga	86047673
TpMuguga_02g00550	mRNA	NOP5-2	NC_007345.1	1107454	1109155	D	TpMuguga_02g00550	join(1107454..1107684,1107800..1109155)	Theileria parva strain Muguga	3502171
TpMuguga_02g00551	mRNA	TpMuguga_02g00551	NC_007345.1	1110612	1111437	R	TpMuguga_02g00551	complement(1110612..1111437)	Theileria parva strain Muguga	3502172
TpMuguga_02g00552	mRNA	TpMuguga_02g00552	NC_007345.1	1112383	1113209	R	TpMuguga_02g00552	complement(1112383..>1113209)	Theileria parva strain Muguga	3502173
TpMuguga_02g00553	mRNA	TpMuguga_02g00553	NC_007345.1	1113623	1114258	R	TpMuguga_02g00553	complement(<1113623..>1114258)	Theileria parva strain Muguga	3502186
TpMuguga_02g02425	mRNA	TpMuguga_02g02425	NC_007345.1	1114809	1115709	R	TpMuguga_02g02425	complement(join(<1114809..1114959,1114990..1115090,1115211..1115576,1115607..1115709))	Theileria parva strain Muguga	86047720
TpMuguga_02g02305	mRNA	ybaR	NC_007345.1	1115765	1118524	R	TpMuguga_02g02305	complement(join(1115765..1115824,1115854..1115982,1116160..1117730,1117811..1118229,1118310..1118524))	Theileria parva strain Muguga	3502187
TpMuguga_02g00555	mRNA	TpMuguga_02g00555	NC_007345.1	1119032	1120085	D	TpMuguga_02g00555	join(1119032..1119375,1119407..1119593,1119727..1119825,1119856..1120085)	Theileria parva strain Muguga	3502188
TpMuguga_02g00556	mRNA	TpMuguga_02g00556	NC_007345.1	1120041	1123198	R	TpMuguga_02g00556	complement(join(1120041..1120397,1120730..1121008,1121158..1121336,1121527..1122065,1122455..1123198))	Theileria parva strain Muguga	3502189
TpMuguga_02g00557	mRNA	Pfn	NC_007345.1	1123303	1124111	D	TpMuguga_02g00557	join(1123303..1123401,1123610..1124111)	Theileria parva strain Muguga	3502190
TpMuguga_02g00558	mRNA	NOP2	NC_007345.1	1124174	1126885	D	TpMuguga_02g00558	join(1124174..1124672,1124853..1124932,1125011..1125102,1125300..1125490,1125642..1125780,1126103..1126425,1126660..1126885)	Theileria parva strain Muguga	3502191
TpMuguga_02g00559	mRNA	ypt3	NC_007345.1	1126838	1128333	R	TpMuguga_02g00559	complement(join(1126838..1127164,1127405..1127735,1128101..1128333))	Theileria parva strain Muguga	3502074
TpMuguga_02g00560	mRNA	pre3	NC_007345.1	1128612	1129954	D	TpMuguga_02g00560	join(1128612..1129092,1129488..1129954)	Theileria parva strain Muguga	3502075
TpMuguga_02g00561	mRNA	TpMuguga_02g00561	NC_007345.1	1129931	1131585	D	TpMuguga_02g00561	join(1129931..1130371,1130941..1131585)	Theileria parva strain Muguga	3502076
TpMuguga_02g00562	mRNA	ROM4	NC_007345.1	1132032	1135160	D	TpMuguga_02g00562	join(1132032..1133277,1133435..1133525,1133769..1134029,1134172..1134334,1134445..1134590,1134966..>1135160)	Theileria parva strain Muguga	3502077
TpMuguga_02g00563	mRNA	NPLOC4	NC_007345.1	1135400	1137747	D	TpMuguga_02g00563	join(1135400..1135749,1135791..1135971,1136023..1136174,1136373..1136600,1136854..1137747)	Theileria parva strain Muguga	3502078
TpMuguga_02g00564	mRNA	TpMuguga_02g00564	NC_007345.1	1138280	1139188	D	TpMuguga_02g00564	<1138280..>1139188	Theileria parva strain Muguga	3502079
TpMuguga_02g00565	mRNA	PROSC	NC_007345.1	1139324	1139971	R	TpMuguga_02g00565	complement(<1139324..>1139971)	Theileria parva strain Muguga	3502080
TpMuguga_02g02170	mRNA	ROM4	NC_007345.1	1140085	1143502	R	TpMuguga_02g02170	complement(join(1140085..1140185,1140355..1140562,1140827..1140972,1141260..1141425,1141457..1141510,1141567..1141625,1141791..1141941,1142187..1142277,1142448..1142780,1143063..>1143502))	Theileria parva strain Muguga	3501871
TpMuguga_02g02280	mRNA	TpMuguga_02g02280	NC_007345.1	1143868	1144604	R	TpMuguga_02g02280	complement(join(1143868..1143959,1144190..1144293,1144359..1144604))	Theileria parva strain Muguga	86047702
TpMuguga_02g00568	mRNA	rpl4a	NC_007345.1	1144674	1145968	R	TpMuguga_02g00568	complement(1144674..1145968)	Theileria parva strain Muguga	3501872
TpMuguga_02g00569	mRNA	TpMuguga_02g00569	NC_007345.1	1146692	1148028	D	TpMuguga_02g00569	<1146692..1148028	Theileria parva strain Muguga	3501873
TpMuguga_02g00570	mRNA	TpMuguga_02g00570	NC_007345.1	1148420	1149103	D	TpMuguga_02g00570	<1148420..>1149103	Theileria parva strain Muguga	3501874
TpMuguga_02g00571	mRNA	TpMuguga_02g00571	NC_007345.1	1149443	1151678	D	TpMuguga_02g00571	join(1149443..1149522,1149556..1150828,1150948..>1151678)	Theileria parva strain Muguga	3501875
TpMuguga_02g02100	mRNA	TpMuguga_02g02100	NC_007345.1	1152017	1155558	R	TpMuguga_02g02100	complement(join(1152017..1154304,1154573..1154841,1154912..1155033,1155126..1155210,1155328..1155558))	Theileria parva strain Muguga	3501765
TpMuguga_02g00574	mRNA	TpMuguga_02g00574	NC_007345.1	1155575	1157849	R	TpMuguga_02g00574	complement(join(1155575..1155982,1156227..1156302,1156332..1156403,1156530..1156591,1156629..1156769,1157025..1157072,1157255..1157849))	Theileria parva strain Muguga	3501766
TpMuguga_02g00575	mRNA	TpMuguga_02g00575	NC_007345.1	1157651	1158543	D	TpMuguga_02g00575	join(1157651..1158007,1158168..1158369,1158454..1158543)	Theileria parva strain Muguga	3501767
TpMuguga_02g00576	mRNA	GUK1	NC_007345.1	1159391	1160315	R	TpMuguga_02g00576	complement(1159391..1160315)	Theileria parva strain Muguga	3501768
TpMuguga_02g00577	mRNA	PFP-BETA2	NC_007345.1	1160386	1167618	D	TpMuguga_02g00577	join(1160386..1160945,1161528..1161740,1162017..1164563,1165122..1165364,1165710..1167618)	Theileria parva strain Muguga	3501769
TpMuguga_02g00578	mRNA	TpMuguga_02g00578	NC_007345.1	1168758	1170194	D	TpMuguga_02g00578	1168758..1170194	Theileria parva strain Muguga	3501573
TpMuguga_02g00579	mRNA	TpMuguga_02g00579	NC_007345.1	1170481	1174247	D	TpMuguga_02g00579	join(1170481..1173544,1173999..1174247)	Theileria parva strain Muguga	3501574
TpMuguga_02g00580	mRNA	PUB49	NC_007345.1	1174906	1176815	R	TpMuguga_02g00580	complement(join(<1174906..1176005,1176343..1176815))	Theileria parva strain Muguga	3501575
TpMuguga_02g00581	mRNA	TpMuguga_02g00581	NC_007345.1	1176911	1182455	D	TpMuguga_02g00581	join(1176911..1177523,1177555..1177618,1177744..1177882,1178777..1178815,1179122..1179696,1179810..1180040,1180410..1180580,1180950..1181068,1181109..1181194,1181407..1182026,1182138..1182455)	Theileria parva strain Muguga	3501576
TpMuguga_02g00582	mRNA	TpMuguga_02g00582	NC_007345.1	1182502	1184016	R	TpMuguga_02g00582	complement(join(<1182502..1183464,1183531..>1184016))	Theileria parva strain Muguga	3501577
TpMuguga_02g00583	mRNA	TpMuguga_02g00583	NC_007345.1	1184081	1186796	R	TpMuguga_02g00583	complement(join(1184081..1184305,1184335..1184535,1184568..1184603,1184635..1185024,1185056..>1186796))	Theileria parva strain Muguga	3501578
TpMuguga_02g00584	mRNA	csnk2b	NC_007345.1	1186872	1188161	D	TpMuguga_02g00584	join(1186872..1187251,1187337..1187549,1187627..1187953,1188059..1188161)	Theileria parva strain Muguga	3501621
TpMuguga_02g00585	mRNA	TpMuguga_02g00585	NC_007345.1	1188151	1189105	D	TpMuguga_02g00585	join(1188151..1188307,1188408..1188520,1188637..1188706,1188803..1188924,1188956..>1189105)	Theileria parva strain Muguga	3501622
TpMuguga_02g00586	mRNA	TpMuguga_02g00586	NC_007345.1	1189236	1189991	R	TpMuguga_02g00586	complement(<1189236..>1189991)	Theileria parva strain Muguga	3501623
TpMuguga_02g00587	mRNA	TpMuguga_02g00587	NC_007345.1	1190047	1190936	D	TpMuguga_02g00587	join(1190047..1190330,1190360..1190666,1190729..1190807,1190874..>1190936)	Theileria parva strain Muguga	3501624
TpMuguga_02g02240	mRNA	TpMuguga_02g02240	NC_007345.1	1190942	1192505	R	TpMuguga_02g02240	complement(join(1190942..1191202,1191233..1191306,1191336..1191501,1191534..1191845,1191907..1192022,1192088..>1192505))	Theileria parva strain Muguga	3501625
TpMuguga_02g02450	mRNA	TpMuguga_02g02450	NC_007345.1	1192398	1194984	R	TpMuguga_02g02450	complement(1192398..1194984)	Theileria parva strain Muguga	3501626
TpMuguga_02g00590	mRNA	TLDC2	NC_007345.1	1195067	1196479	R	TpMuguga_02g00590	complement(1195067..1196479)	Theileria parva strain Muguga	3501627
TpMuguga_02g00591	mRNA	TpMuguga_02g00591	NC_007345.1	1196728	1200543	R	TpMuguga_02g00591	complement(1196728..1200543)	Theileria parva strain Muguga	3502292
TpMuguga_02g00592	mRNA	TpMuguga_02g00592	NC_007345.1	1201076	1204576	R	TpMuguga_02g00592	complement(<1201076..1204576)	Theileria parva strain Muguga	3502293
TpMuguga_02g00593	mRNA	TpMuguga_02g00593	NC_007345.1	1204923	1208260	R	TpMuguga_02g00593	complement(<1204923..1208260)	Theileria parva strain Muguga	3502294
TpMuguga_02g00594	mRNA	TpMuguga_02g00594	NC_007345.1	1208748	1209974	D	TpMuguga_02g00594	1208748..1209974	Theileria parva strain Muguga	3502295
TpMuguga_02g00596	mRNA	TpMuguga_02g00596	NC_007345.1	1209973	1213480	R	TpMuguga_02g00596	complement(join(1209973..1210294,1210412..1210955,1210988..1211064,1211171..1211282,1211318..1211595,1211625..1211750,1211782..1212556,1212615..1212736,1212767..1212877,1212908..1213480))	Theileria parva strain Muguga	3502296
TpMuguga_02g00595	mRNA	prpf31	NC_007345.1	1213555	1215368	D	TpMuguga_02g00595	join(1213555..1213594,1213656..1213883,1213916..1214477,1214541..1214716,1214782..1214968,1215023..1215100,1215162..1215242,1215277..>1215368)	Theileria parva strain Muguga	3502297
TpMuguga_02g00597	mRNA	NEDD8	NC_007345.1	1215265	1215911	R	TpMuguga_02g00597	complement(join(1215265..1215504,1215558..1215593,1215623..1215911))	Theileria parva strain Muguga	3501423
TpMuguga_02g00598	mRNA	CWC27	NC_007345.1	1215926	1217685	R	TpMuguga_02g00598	complement(join(<1215926..1215955,1216078..1216146,1216177..1216268,1216307..1216397,1216429..1216765,1216794..1216894,1216924..1217066,1217098..1217163,1217242..1217310,1217392..1217685))	Theileria parva strain Muguga	3501424
TpMuguga_02g00599	mRNA	tbce	NC_007345.1	1217716	1219455	R	TpMuguga_02g00599	complement(join(1217716..1217842,1217907..1219455))	Theileria parva strain Muguga	3501425
TpMuguga_02g00600	mRNA	PCNA	NC_007345.1	1219585	1221214	R	TpMuguga_02g00600	complement(join(1219585..1220043,1220330..1221214))	Theileria parva strain Muguga	3501426
TpMuguga_02g00601	mRNA	TpMuguga_02g00601	NC_007345.1	1221266	1223650	D	TpMuguga_02g00601	join(1221266..1222758,1222855..1223291,1223459..1223650)	Theileria parva strain Muguga	3501427
TpMuguga_02g00602	mRNA	TpMuguga_02g00602	NC_007345.1	1223750	1225028	D	TpMuguga_02g00602	join(1223750..1224057,1224229..1224480,1224741..1225028)	Theileria parva strain Muguga	3501428
TpMuguga_02g00603	mRNA	yqeH	NC_007345.1	1225214	1228293	R	TpMuguga_02g00603	complement(join(1225214..1225685,1225884..1226301,1226478..1226623,1227110..1228018,1228066..1228293))	Theileria parva strain Muguga	3501452
TpMuguga_02g00604	mRNA	TpMuguga_02g00604	NC_007345.1	1228026	1229385	D	TpMuguga_02g00604	join(1228026..1228634,1228664..1228725,1228973..1229120,1229188..1229385)	Theileria parva strain Muguga	3501453
TpMuguga_02g00605	mRNA	SLC25A37	NC_007345.1	1229489	1231381	D	TpMuguga_02g00605	join(1229489..1229677,1230027..1230647,1231012..1231115,1231226..>1231381)	Theileria parva strain Muguga	3501454
TpMuguga_02g00606	mRNA	TpMuguga_02g00606	NC_007345.1	1231522	1232464	R	TpMuguga_02g00606	complement(1231522..1232464)	Theileria parva strain Muguga	3501455
TpMuguga_02g00607	mRNA	fttB	NC_007345.1	1232470	1234588	D	TpMuguga_02g00607	join(1232470..1232978,1233049..1233131,1233413..1233616,1233848..1234017,1234332..1234588)	Theileria parva strain Muguga	3501456
TpMuguga_02g00608	mRNA	TpMuguga_02g00608	NC_007345.1	1234657	1235721	D	TpMuguga_02g00608	<1234657..>1235721	Theileria parva strain Muguga	3501457
TpMuguga_02g00609	mRNA	FCF1	NC_007345.1	1235776	1237181	R	TpMuguga_02g00609	complement(join(1235776..1235944,1236188..1236348,1236430..1236462,1236559..1236707,1236745..1236798,1236876..1236943,1237078..1237181))	Theileria parva strain Muguga	3501471
TpMuguga_02g00610	mRNA	TpMuguga_02g00610	NC_007345.1	1237141	1237916	R	TpMuguga_02g00610	complement(join(<1237141..1237275,1237439..1237916))	Theileria parva strain Muguga	3501472
TpMuguga_02g00611	mRNA	htz-1	NC_007345.1	1238144	1239223	R	TpMuguga_02g00611	complement(join(1238144..1238613,1239018..1239223))	Theileria parva strain Muguga	3501473
TpMuguga_02g00612	mRNA	trappc5	NC_007345.1	1239409	1240823	R	TpMuguga_02g00612	complement(join(<1239409..1239489,1239626..1239697,1239945..1239997,1240077..1240258,1240572..1240660,1240696..1240823))	Theileria parva strain Muguga	3501474
TpMuguga_02g00613	mRNA	RH8	NC_007345.1	1240802	1244156	R	TpMuguga_02g00613	complement(join(1240802..1240976,1241244..1242084,1242563..1242628,1242797..1242965,1243686..1244156))	Theileria parva strain Muguga	3501475
TpMuguga_02g00614	mRNA	TpMuguga_02g00614	NC_007345.1	1244291	1244849	R	TpMuguga_02g00614	complement(join(1244291..1244517,1244595..1244849))	Theileria parva strain Muguga	3501476
TpMuguga_02g02030	mRNA	RLIM	NC_007345.1	1244559	1246226	D	TpMuguga_02g02030	join(1244559..1244862,1245100..1245261,1245292..1245416,1245513..1245599,1245630..1246226)	Theileria parva strain Muguga	86047680
TpMuguga_02g02615	mRNA	TpMuguga_02g02615	NC_007345.1	1247038	1250029	D	TpMuguga_02g02615	join(<1247038..1247824,1247854..1248036,1248694..1250029)	Theileria parva strain Muguga	3501487
TpMuguga_02g02010	mRNA	TpMuguga_02g02010	NC_007345.1	1250006	1250977	D	TpMuguga_02g02010	1250006..1250977	Theileria parva strain Muguga	86047677
TpMuguga_02g02455	mRNA	TpMuguga_02g02455	NC_007345.1	1251345	1252055	D	TpMuguga_02g02455	<1251345..>1252055	Theileria parva strain Muguga	3501488
TpMuguga_02g00617	mRNA	TpMuguga_02g00617	NC_007345.1	1252730	1253359	R	TpMuguga_02g00617	complement(join(<1252730..1252854,1253224..>1253359))	Theileria parva strain Muguga	3501489
TpMuguga_02g00618	mRNA	TpMuguga_02g00618	NC_007345.1	1253967	1256084	R	TpMuguga_02g00618	complement(<1253967..>1256084)	Theileria parva strain Muguga	3501490
TpMuguga_02g00619	mRNA	TpMuguga_02g00619	NC_007345.1	1256516	1258020	R	TpMuguga_02g00619	complement(join(<1256516..1256607,1256728..1256768,1257185..1257537,1257640..1258020))	Theileria parva strain Muguga	3501491
TpMuguga_02g02470	mRNA	TpMuguga_02g02470	NC_007345.1	1258306	1264211	R	TpMuguga_02g02470	complement(join(<1258306..1258525,1259086..1259231,1259375..1260591,1260898..1262265,1262392..1262997,1263247..1263300,1263343..1263531,1263731..1263982,1264070..1264101,1264132..>1264211))	Theileria parva strain Muguga	3501494
TpMuguga_02g02460	mRNA	TpMuguga_02g02460	NC_007345.1	1264349	1264934	D	TpMuguga_02g02460	join(1264349..1264616,1264746..1264844,1264898..>1264934)	Theileria parva strain Muguga	86047723
TpMuguga_02g00624	mRNA	TpMuguga_02g00624	NC_007345.1	1265070	1265900	D	TpMuguga_02g00624	join(1265070..1265190,1265603..1265900)	Theileria parva strain Muguga	3501496
TpMuguga_02g00625	mRNA	Dnajb13	NC_007345.1	1266187	1268239	R	TpMuguga_02g00625	complement(join(<1266187..1266414,1266503..1266584,1266834..1266916,1266947..1267038,1267259..1267435,1267678..1267822,1267930..1268052,1268084..1268239))	Theileria parva strain Muguga	3501497
TpMuguga_02g00626	mRNA	TpMuguga_02g00626	NC_007345.1	1268361	1269041	R	TpMuguga_02g00626	complement(join(<1268361..1268558,1268709..>1269041))	Theileria parva strain Muguga	3501498
TpMuguga_02g00627	mRNA	TpMuguga_02g00627	NC_007345.1	1269133	1271346	R	TpMuguga_02g00627	complement(join(<1269133..1269231,1269266..1269375,1269404..1269505,1269748..1269976,1270154..1270386,1270523..1271346))	Theileria parva strain Muguga	3501499
TpMuguga_02g00628	mRNA	TpMuguga_02g00628	NC_007345.1	1271360	1274188	D	TpMuguga_02g00628	<1271360..1274188	Theileria parva strain Muguga	3501529
TpMuguga_02g00629	mRNA	TpMuguga_02g00629	NC_007345.1	1274164	1276065	R	TpMuguga_02g00629	complement(join(<1274164..1274178,1274280..1274762,1274866..>1276065))	Theileria parva strain Muguga	3501530
TpMuguga_02g00630	mRNA	ppk34	NC_007345.1	1276503	1277950	D	TpMuguga_02g00630	join(1276503..1276837,1276869..1276991,1277026..1277103,1277159..1277254,1277377..1277828,1277879..>1277950)	Theileria parva strain Muguga	3501531
TpMuguga_02g00631	mRNA	mis3	NC_007345.1	1277981	1279333	D	TpMuguga_02g00631	join(<1277981..1278076,1278128..1278228,1278264..1278366,1278396..1278492,1278522..1278787,1278916..1279023,1279055..>1279333)	Theileria parva strain Muguga	3501532
TpMuguga_02g00632	mRNA	TpMuguga_02g00632	NC_007345.1	1279455	1280976	D	TpMuguga_02g00632	join(1279455..1279784,1279824..1279867,1280029..1280116,1280208..1280341,1280371..1280424,1280455..1280531,1280624..1280683,1280714..1280976)	Theileria parva strain Muguga	3501533
TpMuguga_02g00633	mRNA	TpMuguga_02g00633	NC_007345.1	1280994	1281865	R	TpMuguga_02g00633	complement(join(1280994..1281566,1281614..1281865))	Theileria parva strain Muguga	3502349
TpMuguga_02g02245	mRNA	NHX7	NC_007345.1	1281950	1285504	D	TpMuguga_02g02245	join(1281950..1282538,1282637..1282817,1282866..1283324,1283356..1283474,1283584..1283733,1283801..1284224,1284259..1284506,1284538..1284657,1284819..1285141,1285186..>1285504)	Theileria parva strain Muguga	3502350
TpMuguga_02g00636	mRNA	SF3A2	NC_007345.1	1285578	1286445	D	TpMuguga_02g00636	join(<1285578..1285886,1285967..1286198,1286230..1286330,1286362..>1286445)	Theileria parva strain Muguga	3502352
TpMuguga_02g00637	mRNA	TpMuguga_02g00637	NC_007345.1	1286782	1288488	D	TpMuguga_02g00637	<1286782..1288488	Theileria parva strain Muguga	3502353
TpMuguga_02g00638	mRNA	dnaJ	NC_007345.1	1288788	1290817	R	TpMuguga_02g00638	complement(join(1288788..1289317,1289376..1289786,1289852..1290171,1290230..1290306,1290339..1290489,1290535..1290637,1290668..1290698,1290735..1290817))	Theileria parva strain Muguga	3502354
TpMuguga_02g00639	mRNA	TpMuguga_02g00639	NC_007345.1	1290903	1292576	D	TpMuguga_02g00639	join(<1290903..1291031,1291086..1291163,1291242..1291290,1291360..1291508,1291547..1291661,1291694..1291820,1291876..1292080,1292135..1292246,1292312..1292382,1292442..>1292576)	Theileria parva strain Muguga	3501791
TpMuguga_02g02230	mRNA	UBC16	NC_007345.1	1292592	1293313	D	TpMuguga_02g02230	join(<1292592..1292723,1292755..1292947,1292988..1293146,1293252..>1293313)	Theileria parva strain Muguga	3501792
TpMuguga_02g02620	mRNA	TpMuguga_02g02620	NC_007345.1	1293595	1294339	D	TpMuguga_02g02620	join(<1293595..1293809,1293842..1294011,1294041..>1294339)	Theileria parva strain Muguga	3501793
TpMuguga_02g00642	mRNA	AP4M	NC_007345.1	1294345	1296003	R	TpMuguga_02g00642	complement(join(<1294345..1294434,1294470..1294589,1294620..1294676,1294741..1295472,1295505..1295663,1295705..1295886,1295922..>1296003))	Theileria parva strain Muguga	3501794
TpMuguga_02g02330	mRNA	TpMuguga_02g02330	NC_007345.1	1296122	1297566	D	TpMuguga_02g02330	join(1296122..1296464,1296504..1296724,1296756..1297566)	Theileria parva strain Muguga	3501796
TpMuguga_02g00645	mRNA	TpMuguga_02g00645	NC_007345.1	1297682	1299289	D	TpMuguga_02g00645	join(1297682..1298712,1298758..1299009,1299074..1299148,1299190..1299289)	Theileria parva strain Muguga	3501797
TpMuguga_02g00646	mRNA	TpMuguga_02g00646	NC_007345.1	1299377	1300511	D	TpMuguga_02g00646	join(1299377..1299509,1299541..1299816,1299878..1299955,1299985..1300118,1300174..1300230,1300261..1300511)	Theileria parva strain Muguga	3501798
TpMuguga_02g00647	mRNA	TpMuguga_02g00647	NC_007345.1	1300488	1301667	D	TpMuguga_02g00647	join(<1300488..1301258,1301307..1301371,1301403..1301667)	Theileria parva strain Muguga	3501799
TpMuguga_02g00648	mRNA	TpMuguga_02g00648	NC_007345.1	1301703	1302896	D	TpMuguga_02g00648	join(1301703..1301951,1302009..1302259,1302293..1302504,1302588..1302638,1302690..1302896)	Theileria parva strain Muguga	3501800
TpMuguga_02g00649	mRNA	TpMuguga_02g00649	NC_007345.1	1302915	1306609	D	TpMuguga_02g00649	join(1302915..1302971,1303008..1303139,1303183..1303316,1303367..1303515,1303546..1303651,1303694..1303752,1303793..1303871,1303902..1303969,1303999..1305642,1305674..1305854,1306024..1306094,1306127..1306269,1306302..1306415,1306444..1306609)	Theileria parva strain Muguga	3501801
TpMuguga_02g00651	mRNA	TpMuguga_02g00651	NC_007345.1	1306680	1307510	R	TpMuguga_02g00651	complement(1306680..1307510)	Theileria parva strain Muguga	3501803
TpMuguga_02g00652	mRNA	TpMuguga_02g00652	NC_007345.1	1307509	1309116	R	TpMuguga_02g00652	complement(join(<1307509..1308578,1308609..1308702,1308802..1309116))	Theileria parva strain Muguga	3502316
TpMuguga_02g00653	mRNA	TpMuguga_02g00653	NC_007345.1	1309181	1310259	R	TpMuguga_02g00653	complement(join(1309181..1309557,1309608..1309681,1309713..1309843,1309911..1310038,1310083..1310259))	Theileria parva strain Muguga	3502317
TpMuguga_02g00654	mRNA	TpMuguga_02g00654	NC_007345.1	1310328	1311462	D	TpMuguga_02g00654	join(1310328..1310766,1310856..1311462)	Theileria parva strain Muguga	3502318
TpMuguga_02g00655	mRNA	TpMuguga_02g00655	NC_007345.1	1311941	1312981	D	TpMuguga_02g00655	join(<1311941..1312794,1312861..>1312981)	Theileria parva strain Muguga	3502319
TpMuguga_02g00656	mRNA	TpMuguga_02g00656	NC_007345.1	1313187	1314406	D	TpMuguga_02g00656	join(<1313187..1314217,1314283..>1314406)	Theileria parva strain Muguga	3502320
TpMuguga_02g00657	mRNA	TpMuguga_02g00657	NC_007345.1	1314636	1315798	D	TpMuguga_02g00657	join(<1314636..1315615,1315678..>1315798)	Theileria parva strain Muguga	3502321
TpMuguga_02g00658	mRNA	TpMuguga_02g00658	NC_007345.1	1316350	1317573	D	TpMuguga_02g00658	join(<1316350..1317341,1317450..>1317573)	Theileria parva strain Muguga	3501913
TpMuguga_02g00659	mRNA	TpMuguga_02g00659	NC_007345.1	1317768	1318991	D	TpMuguga_02g00659	join(<1317768..1318795,1318862..>1318991)	Theileria parva strain Muguga	3501914
TpMuguga_02g00660	mRNA	TpMuguga_02g00660	NC_007345.1	1319181	1320388	D	TpMuguga_02g00660	join(<1319181..1320211,1320274..>1320388)	Theileria parva strain Muguga	3501915
TpMuguga_02g00661	mRNA	CSTF1	NC_007345.1	1320636	1322459	R	TpMuguga_02g00661	complement(join(1320636..1320707,1320738..1320806,1320838..1320919,1320965..1321064,1321096..1321254,1321288..1321365,1321399..1321550,1321581..1321672,1321723..1321800,1321832..1321944,1321979..1322090,1322122..1322283,1322327..1322459))	Theileria parva strain Muguga	3501916
TpMuguga_02g00662	mRNA	Tbl3	NC_007345.1	1323053	1325884	D	TpMuguga_02g00662	join(1323053..1323083,1323117..1323268,1323305..1323746,1323798..1324275,1324325..1324692,1324750..1324953,1324986..1325129,1325250..1325884)	Theileria parva strain Muguga	3501917
TpMuguga_02g00663	mRNA	BUB3.2	NC_007345.1	1325929	1327198	R	TpMuguga_02g00663	complement(join(1325929..1326412,1326442..1326500,1326604..1326758,1326791..1327016,1327049..1327198))	Theileria parva strain Muguga	3501918
TpMuguga_02g00664	mRNA	GCN2	NC_007345.1	1327176	1330954	R	TpMuguga_02g00664	complement(join(1327176..1327249,1327382..1329327,1329407..1330954))	Theileria parva strain Muguga	3502048
TpMuguga_02g00665	mRNA	chmp2a2	NC_007345.1	1331042	1332053	D	TpMuguga_02g00665	join(1331042..1331753,1331836..>1332053)	Theileria parva strain Muguga	3502049
TpMuguga_02g00666	mRNA	CS	NC_007345.1	1332424	1334712	D	TpMuguga_02g00666	join(<1332424..1333758,1333824..1333914,1334008..1334385,1334462..1334712)	Theileria parva strain Muguga	3502050
TpMuguga_02g00667	mRNA	ISPG	NC_007345.1	1334753	1337853	D	TpMuguga_02g00667	join(<1334753..1334836,1334900..1334990,1335020..1335186,1335239..1335388,1335420..1335625,1335703..1335935,1335994..1336379,1336443..1336901,1336940..1337125,1337214..1337339,1337432..1337506,1337552..1337686,1337720..1337853)	Theileria parva strain Muguga	3502051
TpMuguga_02g02605	mRNA	TpMuguga_02g02605	NC_007345.1	1337971	1338763	R	TpMuguga_02g02605	complement(join(1337971..1338211,1338243..1338312,1338465..1338763))	Theileria parva strain Muguga	86047733
TpMuguga_02g02600	mRNA	TpMuguga_02g02600	NC_007345.1	1338905	1340118	R	TpMuguga_02g02600	complement(join(1338905..1339047,1339120..1339211,1339310..1339451,1339484..1339668,1339712..1339819,1339903..1340118))	Theileria parva strain Muguga	3502052
TpMuguga_02g00669	mRNA	VPS9A	NC_007345.1	1340188	1342228	D	TpMuguga_02g00669	join(1340188..1340441,1340509..1340739,1340786..1340876,1340935..1341028,1341097..1341185,1341275..1341511,1341572..1342228)	Theileria parva strain Muguga	3502210
TpMuguga_02g00670	mRNA	grwd1	NC_007345.1	1342370	1343999	R	TpMuguga_02g00670	complement(join(1342370..1342820,1342851..1343121,1343203..1343613,1343671..1343999))	Theileria parva strain Muguga	3502211
TpMuguga_02g00671	mRNA	TpMuguga_02g00671	NC_007345.1	1344037	1346229	D	TpMuguga_02g00671	join(1344037..1344177,1344281..1344435,1344483..1344578,1344682..1344774,1344804..1344888,1344954..1345741,1345903..1345971,1346003..1346229)	Theileria parva strain Muguga	3502212
TpMuguga_02g00672	mRNA	TpMuguga_02g00672	NC_007345.1	1346230	1348172	D	TpMuguga_02g00672	1346230..1348172	Theileria parva strain Muguga	3502213
TpMuguga_02g00673	mRNA	TpMuguga_02g00673	NC_007345.1	1348249	1350162	D	TpMuguga_02g00673	join(1348249..1349330,1349435..1350162)	Theileria parva strain Muguga	3502214
TpMuguga_02g00674	mRNA	TpMuguga_02g00674	NC_007345.1	1350337	1351911	D	TpMuguga_02g00674	1350337..1351911	Theileria parva strain Muguga	3502101
TpMuguga_02g00675	mRNA	TpMuguga_02g00675	NC_007345.1	1352046	1355526	R	TpMuguga_02g00675	complement(join(1352046..1352108,1352139..1352291,1352326..1352610,1352719..1353762,1353797..1354686,1354770..1355526))	Theileria parva strain Muguga	3502102
TpMuguga_02g00676	mRNA	PARN	NC_007345.1	1355584	1357596	D	TpMuguga_02g00676	1355584..1357596	Theileria parva strain Muguga	3502103
TpMuguga_02g00677	mRNA	TpMuguga_02g00677	NC_007345.1	1357784	1359452	D	TpMuguga_02g00677	join(1357784..1357976,1358135..1358274,1358345..1358464,1358531..1358649,1358682..1358751,1358846..1358922,1358964..1359245,1359366..1359452)	Theileria parva strain Muguga	3502104
TpMuguga_02g00678	mRNA	TpMuguga_02g00678	NC_007345.1	1359513	1360705	D	TpMuguga_02g00678	join(1359513..1359627,1359661..1359751,1359803..1359871,1359936..1360009,1360067..1360209,1360286..1360428,1360514..1360705)	Theileria parva strain Muguga	3502105
TpMuguga_02g00679	mRNA	TpMuguga_02g00679	NC_007345.1	1360723	1361498	R	TpMuguga_02g00679	complement(join(1360723..1360782,1360904..1361211,1361301..1361498))	Theileria parva strain Muguga	3502106
TpMuguga_02g00680	mRNA	rpmB	NC_007345.1	1361808	1362828	D	TpMuguga_02g00680	join(1361808..1362011,1362093..1362151,1362270..1362386,1362455..1362715,1362745..1362828)	Theileria parva strain Muguga	3501949
TpMuguga_02g00681	mRNA	TpMuguga_02g00681	NC_007345.1	1362791	1364220	R	TpMuguga_02g00681	complement(join(1362791..1363382,1363455..1363703,1363805..1364059,1364094..>1364220))	Theileria parva strain Muguga	3501950
TpMuguga_02g00682	mRNA	TpMuguga_02g00682	NC_007345.1	1364292	1365405	D	TpMuguga_02g00682	join(1364292..1364493,1364558..1364642,1364681..1364746,1364780..1364880,1364956..1365037,1365107..1365405)	Theileria parva strain Muguga	3501951
TpMuguga_02g00683	mRNA	Cdc6	NC_007345.1	1365336	1367494	R	TpMuguga_02g00683	complement(join(<1365336..1365535,1365613..1365736,1365816..1366000,1366070..1366242,1366334..1366690,1366785..1367093,1367172..1367494))	Theileria parva strain Muguga	3501952
TpMuguga_02g00684	mRNA	TpMuguga_02g00684	NC_007345.1	1367583	1369734	D	TpMuguga_02g00684	join(1367583..1367882,1367915..1368013,1368044..1368470,1368560..1368998,1369075..1369290,1369324..1369580,1369614..1369734)	Theileria parva strain Muguga	3501953
TpMuguga_02g00685	mRNA	kif6	NC_007345.1	1369607	1371836	R	TpMuguga_02g00685	complement(join(1369607..1370664,1370812..1371020,1371074..1371454,1371585..1371836))	Theileria parva strain Muguga	3501944
TpMuguga_02g00686	mRNA	TATDN1	NC_007345.1	1371929	1373504	R	TpMuguga_02g00686	complement(join(1371929..1372051,1372159..1372360,1372390..1372578,1372646..1372731,1372800..1373010,1373039..1373139,1373204..1373504))	Theileria parva strain Muguga	3501945
TpMuguga_02g00687	mRNA	TpMuguga_02g00687	NC_007345.1	1373539	1374678	D	TpMuguga_02g00687	1373539..1374678	Theileria parva strain Muguga	3501946
TpMuguga_02g00688	mRNA	VAC14	NC_007345.1	1374805	1377605	R	TpMuguga_02g00688	complement(join(1374805..1374940,1374969..1375108,1375175..1375255,1375285..1375358,1375389..1375448,1375510..1375605,1375637..1375753,1375781..1375856,1375939..1376376,1376468..1376537,1376569..1376602,1376682..1376843,1376909..1376986,1377139..1377231,1377321..>1377605))	Theileria parva strain Muguga	3501947
TpMuguga_02g00689	mRNA	UBA1	NC_007345.1	1377649	1381800	R	TpMuguga_02g00689	complement(join(1377649..1377786,1377930..1378652,1378749..1379041,1379176..1379452,1379532..1379705,1379785..1379928,1380001..1380183,1380245..1380578,1380684..1380868,1380957..1381187,1381275..1381471,1381570..1381800))	Theileria parva strain Muguga	3501948
TpMuguga_02g02315	mRNA	TpMuguga_02g02315	NC_007345.1	1381907	1382584	R	TpMuguga_02g02315	complement(<1381907..>1382584)	Theileria parva strain Muguga	86047706
TpMuguga_02g02650	mRNA	TpMuguga_02g02650	NC_007345.1	1382589	1383099	R	TpMuguga_02g02650	complement(join(<1382589..1382648,1382774..1382905,1382967..1383099))	Theileria parva strain Muguga	86047735
TpMuguga_02g00690	mRNA	CMPK1	NC_007345.1	1383087	1384242	D	TpMuguga_02g00690	join(1383087..1383294,1383339..1383501,1383676..1383921,1384017..1384242)	Theileria parva strain Muguga	3501973
TpMuguga_02g00691	mRNA	TpMuguga_02g00691	NC_007345.1	1384429	1386201	D	TpMuguga_02g00691	<1384429..>1386201	Theileria parva strain Muguga	3501974
TpMuguga_02g02185	mRNA	RABGAP1	NC_007345.1	1386469	1388989	R	TpMuguga_02g02185	complement(join(1386469..1387164,1387259..1387360,1387432..1387513,1387606..1387689,1387771..1387851,1387946..1388123,1388190..1388989))	Theileria parva strain Muguga	3501976
TpMuguga_02g02260	mRNA	TpMuguga_02g02260	NC_007345.1	1388984	1390187	D	TpMuguga_02g02260	join(1388984..1389312,1389406..1389489,1389596..1389773,1389867..1390187)	Theileria parva strain Muguga	3501978
TpMuguga_02g00696	mRNA	TpMuguga_02g00696	NC_007345.1	1390181	1392222	R	TpMuguga_02g00696	complement(join(1390181..1390569,1390731..1391072,1391216..1392222))	Theileria parva strain Muguga	3501979
TpMuguga_02g00697	mRNA	CPK2	NC_007345.1	1392390	1394494	R	TpMuguga_02g00697	complement(join(1392390..1392472,1392617..1394494))	Theileria parva strain Muguga	3501679
TpMuguga_02g00698	mRNA	TpMuguga_02g00698	NC_007345.1	1394503	1395525	D	TpMuguga_02g00698	join(1394503..1394823,1394907..1395096,1395202..1395330,1395435..1395525)	Theileria parva strain Muguga	3501680
TpMuguga_02g00699	mRNA	TpMuguga_02g00699	NC_007345.1	1395404	1397288	R	TpMuguga_02g00699	complement(join(1395404..1395529,1395645..1395709,1395803..1396023,1396088..1396347,1396470..1396636,1396678..1396786,1396911..1397023,1397122..1397288))	Theileria parva strain Muguga	3501681
TpMuguga_02g00700	mRNA	TpMuguga_02g00700	NC_007345.1	1397378	1398228	R	TpMuguga_02g00700	complement(join(1397378..1397733,1397927..1398228))	Theileria parva strain Muguga	86047674
TpMuguga_02g00701	mRNA	SEC23	NC_007345.1	1398234	1400994	R	TpMuguga_02g00701	complement(join(1398234..1400116,1400204..1400994))	Theileria parva strain Muguga	3501683
TpMuguga_02g00702	mRNA	TpMuguga_02g00702	NC_007345.1	1401330	1403459	R	TpMuguga_02g00702	complement(join(1401330..1401416,1401472..1401531,1401572..1401691,1401764..1401860,1401895..1401960,1402023..1402144,1402201..1402415,1402446..1402599,1402663..1402834,1402905..1403214,1403274..1403459))	Theileria parva strain Muguga	3501684
TpMuguga_02g02050	mRNA	TpMuguga_02g02050	NC_007345.1	1403519	1404293	D	TpMuguga_02g02050	join(1403519..1403979,1404036..>1404293)	Theileria parva strain Muguga	86047682
TpMuguga_02g00703	mRNA	TpMuguga_02g00703	NC_007345.1	1404343	1416286	R	TpMuguga_02g00703	complement(1404343..>1416286)	Theileria parva strain Muguga	3501634
TpMuguga_02g00704	mRNA	TpMuguga_02g00704	NC_007345.1	1417416	1418530	D	TpMuguga_02g00704	1417416..>1418530	Theileria parva strain Muguga	3501635
TpMuguga_02g00705	mRNA	TpMuguga_02g00705	NC_007345.1	1419158	1420001	D	TpMuguga_02g00705	join(<1419158..1419916,1419942..>1420001)	Theileria parva strain Muguga	3501636
TpMuguga_02g00706	mRNA	TpMuguga_02g00706	NC_007345.1	1420061	1429069	D	TpMuguga_02g00706	join(<1420061..1420845,1420885..1428816,1428850..1429069)	Theileria parva strain Muguga	3501637
TpMuguga_02g00707	mRNA	ARP4	NC_007345.1	1429079	1430465	R	TpMuguga_02g00707	complement(1429079..>1430465)	Theileria parva strain Muguga	3501638
TpMuguga_02g00962	mRNA	TpMuguga_02g00962	NC_007345.1	1430487	1431007	R	TpMuguga_02g00962	complement(join(<1430487..1430672,1430702..1430880,1430913..1431007))	Theileria parva strain Muguga	3501639
TpMuguga_02g00708	mRNA	GNL2	NC_007345.1	1431011	1433091	R	TpMuguga_02g00708	complement(join(<1431011..1431244,1431285..1431376,1431439..1431566,1431600..1431679,1431711..1431811,1431868..1431998,1432030..1432227,1432257..1432330,1432377..1432668,1432700..1432901,1432936..1433091))	Theileria parva strain Muguga	3501640
TpMuguga_02g00709	mRNA	TpMuguga_02g00709	NC_007345.1	1433178	1434166	D	TpMuguga_02g00709	join(1433178..1433340,1433419..1433569,1433603..1433683,1433714..1433871,1433903..1434166)	Theileria parva strain Muguga	3502305
TpMuguga_02g02020	mRNA	TpMuguga_02g02020	NC_007345.1	1434134	1435154	R	TpMuguga_02g02020	complement(join(1434134..1434230,1434261..1434339,1434369..1434425,1434456..1434497,1434526..1434714,1434744..1434956,1434991..1435154))	Theileria parva strain Muguga	3502306
TpMuguga_02g02565	mRNA	TpMuguga_02g02565	NC_007345.1	1435207	1437447	D	TpMuguga_02g02565	join(1435207..1435884,1435981..1436136,1436195..1436694,1436760..1437180,1437209..>1437447)	Theileria parva strain Muguga	3502309
TpMuguga_02g00714	mRNA	TpMuguga_02g00714	NC_007345.1	1437501	1438096	D	TpMuguga_02g00714	join(<1437501..1437920,1437962..1438096)	Theileria parva strain Muguga	3501408
TpMuguga_02g00715	mRNA	pitA	NC_007345.1	1438135	1440636	R	TpMuguga_02g00715	complement(join(1438135..1439709,1439741..1439927,1439969..1440031,1440069..1440217,1440252..1440636))	Theileria parva strain Muguga	3501409
TpMuguga_02g00716	mRNA	TpMuguga_02g00716	NC_007345.1	1440480	1440813	D	TpMuguga_02g00716	join(<1440480..1440557,1440781..>1440813)	Theileria parva strain Muguga	86047675
TpMuguga_02g00717	mRNA	TpMuguga_02g00717	NC_007345.1	1441108	1442157	D	TpMuguga_02g00717	join(1441108..1441295,1441497..1441601,1441742..1441852,1441964..1442157)	Theileria parva strain Muguga	3501411
TpMuguga_02g00718	mRNA	TpMuguga_02g00718	NC_007345.1	1442239	1443372	D	TpMuguga_02g00718	1442239..1443372	Theileria parva strain Muguga	3501412
TpMuguga_02g00719	mRNA	TpMuguga_02g00719	NC_007345.1	1443470	1444946	R	TpMuguga_02g00719	complement(1443470..1444946)	Theileria parva strain Muguga	3501413
TpMuguga_02g00720	mRNA	RPL17	NC_007345.1	1445240	1446372	D	TpMuguga_02g00720	join(1445240..1445394,1445495..1445815,1446100..1446372)	Theileria parva strain Muguga	3501414
TpMuguga_02g00721	mRNA	TpMuguga_02g00721	NC_007345.1	1446389	1448352	D	TpMuguga_02g00721	1446389..1448352	Theileria parva strain Muguga	3501415
TpMuguga_02g00722	mRNA	TpMuguga_02g00722	NC_007345.1	1448369	1449058	R	TpMuguga_02g00722	complement(join(1448369..1448626,1448656..1448782,1448869..1449058))	Theileria parva strain Muguga	3501555
TpMuguga_02g00723	mRNA	TpMuguga_02g00723	NC_007345.1	1449036	1449995	R	TpMuguga_02g00723	complement(join(1449036..1449192,1449250..1449995))	Theileria parva strain Muguga	3501556
TpMuguga_02g00724	mRNA	TpMuguga_02g00724	NC_007345.1	1450795	1454088	D	TpMuguga_02g00724	join(1450795..1451860,1451919..1452266,1452337..1452462,1452530..1454088)	Theileria parva strain Muguga	3501557
TpMuguga_02g00725	mRNA	glpK	NC_007345.1	1454102	1455944	R	TpMuguga_02g00725	complement(join(1454102..1454648,1454685..1454762,1454802..1454890,1454921..1455135,1455169..1455263,1455294..1455394,1455430..1455540,1455582..1455763,1455795..1455944))	Theileria parva strain Muguga	3501558
TpMuguga_02g00726	mRNA	TpMuguga_02g00726	NC_007345.1	1456242	1457259	R	TpMuguga_02g00726	complement(join(1456242..1456332,1456370..1456415,1456447..1456523,1456556..1456618,1456651..1456710,1456742..1456770,1456801..1456894,1456952..1456956,1456991..1457259))	Theileria parva strain Muguga	3501559
TpMuguga_02g00727	mRNA	Pka-C3	NC_007345.1	1457243	1459458	D	TpMuguga_02g00727	1457243..>1459458	Theileria parva strain Muguga	3501659
TpMuguga_02g00728	mRNA	Ddx47	NC_007345.1	1459678	1461526	R	TpMuguga_02g00728	complement(join(<1459678..1459830,1459868..1459931,1459966..1460137,1460177..1460240,1460280..1460474,1460508..1460603,1460641..1460873,1460908..1461526))	Theileria parva strain Muguga	3501660
TpMuguga_02g00729	mRNA	Snrpd2	NC_007345.1	1461598	1462207	D	TpMuguga_02g00729	join(1461598..1461802,1461835..1461974,1462037..>1462207)	Theileria parva strain Muguga	3501661
TpMuguga_02g00730	mRNA	vps11	NC_007345.1	1462321	1465700	D	TpMuguga_02g00730	join(1462321..1462469,1462557..1462773,1462824..1464917,1464948..1465065,1465111..1465377,1465408..1465572,1465604..1465700)	Theileria parva strain Muguga	3501662
TpMuguga_02g00732	mRNA	TpMuguga_02g00732	NC_007345.1	1465608	1467091	D	TpMuguga_02g00732	join(<1465608..1466034,1466064..>1467091)	Theileria parva strain Muguga	86047676
TpMuguga_02g02365	mRNA	TpMuguga_02g02365	NC_007345.1	1467274	1468835	D	TpMuguga_02g02365	join(1467274..1467776,1467808..>1468835)	Theileria parva strain Muguga	3501664
TpMuguga_02g02235	mRNA	wdr55	NC_007345.1	1468867	1470157	R	TpMuguga_02g02235	complement(join(<1468867..1468964,1468994..1469162,1469195..1469311,1469343..1469439,1469468..1469510,1469540..1469606,1469636..1469708,1469743..1469827,1469917..1470020,1470054..>1470157))	Theileria parva strain Muguga	3501714
TpMuguga_02g00735	mRNA	TpMuguga_02g00735	NC_007345.1	1470195	1471323	R	TpMuguga_02g00735	complement(join(1470195..1470242,1470295..1470595,1470638..1470748,1470783..1470920,1470967..1471323))	Theileria parva strain Muguga	3501716
TpMuguga_02g00736	mRNA	Tnks	NC_007345.1	1471391	1472397	R	TpMuguga_02g00736	complement(join(1471391..1471604,1471647..1471704,1471764..1471817,1471860..1471981,1472015..1472043,1472117..>1472397))	Theileria parva strain Muguga	3501717
TpMuguga_02g00737	mRNA	Abcb6	NC_007345.1	1472425	1474696	R	TpMuguga_02g00737	complement(join(<1472425..1472740,1472853..1473364,1473398..1474105,1474167..1474430,1474491..1474696))	Theileria parva strain Muguga	3501718
TpMuguga_02g00738	mRNA	wdr3	NC_007345.1	1474979	1478653	R	TpMuguga_02g00738	complement(join(1474979..1475093,1475126..1475311,1475341..1475520,1475550..1475689,1475771..1475936,1476066..1476305,1476399..1477628,1477731..1477980,1478048..1478372,1478423..1478653))	Theileria parva strain Muguga	3501719
TpMuguga_02g00739	mRNA	TpMuguga_02g00739	NC_007345.1	1478877	1480301	D	TpMuguga_02g00739	1478877..1480301	Theileria parva strain Muguga	3501737
TpMuguga_02g00740	mRNA	TpMuguga_02g00740	NC_007345.1	1480456	1482337	R	TpMuguga_02g00740	complement(join(1480456..1480697,1480729..1480849,1480880..1481020,1481055..1481948,1481985..1482020,1482062..1482337))	Theileria parva strain Muguga	3501738
TpMuguga_02g02090	mRNA	TpMuguga_02g02090	NC_007345.1	1482160	1482814	D	TpMuguga_02g02090	join(<1482160..1482276,1482315..1482396,1482484..1482599,1482634..1482711,1482740..>1482814)	Theileria parva strain Muguga	86047687
TpMuguga_02g00741	mRNA	DPM1	NC_007345.1	1482857	1484424	R	TpMuguga_02g00741	complement(join(1482857..1482936,1482967..1483077,1483107..1483169,1483230..1483861,1483892..1484424))	Theileria parva strain Muguga	3501739
TpMuguga_02g00742	mRNA	OTU2	NC_007345.1	1484127	1484933	D	TpMuguga_02g00742	join(<1484127..1484238,1484306..1484408,1484486..1484631,1484682..1484933)	Theileria parva strain Muguga	3501740
TpMuguga_02g00743	mRNA	TpMuguga_02g00743	NC_007345.1	1485054	1486301	R	TpMuguga_02g00743	complement(join(1485054..1485209,1485282..1485437,1485497..1485604,1485658..1486171,1486215..>1486301))	Theileria parva strain Muguga	3501741
TpMuguga_02g00744	mRNA	TpMuguga_02g00744	NC_007345.1	1486451	1488441	D	TpMuguga_02g00744	join(1486451..1487171,1487203..1487981,1488060..1488214,1488245..1488326,1488361..>1488441)	Theileria parva strain Muguga	3501742
TpMuguga_02g00745	mRNA	TpMuguga_02g00745	NC_007345.1	1488479	1489575	D	TpMuguga_02g00745	join(1488479..1488773,1488825..1489137,1489175..1489575)	Theileria parva strain Muguga	3501785
TpMuguga_02g00747	mRNA	TpMuguga_02g00747	NC_007345.1	1489541	1490571	R	TpMuguga_02g00747	complement(join(<1489541..1489987,1490023..1490101,1490167..1490206,1490328..>1490571))	Theileria parva strain Muguga	3501786
TpMuguga_02g00746	mRNA	asnS	NC_007345.1	1490504	1493110	D	TpMuguga_02g00746	join(1490504..1492435,1492527..1492727,1492829..1493110)	Theileria parva strain Muguga	3501787
TpMuguga_02g00748	mRNA	TpMuguga_02g00748	NC_007345.1	1493276	1495243	R	TpMuguga_02g00748	complement(1493276..1495243)	Theileria parva strain Muguga	3501788
TpMuguga_02g00749	mRNA	TpMuguga_02g00749	NC_007345.1	1495721	1501055	D	TpMuguga_02g00749	join(1495721..1500257,1500326..1500512,1500585..1500662,1500692..1500873,1500905..1500980,1501010..1501055)	Theileria parva strain Muguga	3501789
TpMuguga_02g00750	mRNA	erf1	NC_007345.1	1501271	1503095	R	TpMuguga_02g00750	complement(join(1501271..1501700,1501827..1502039,1502093..1502273,1502316..1502414,1502444..1502604,1502638..1502792,1502871..1503095))	Theileria parva strain Muguga	3501790
TpMuguga_02g00751	mRNA	TpMuguga_02g00751	NC_007345.1	1503521	1503874	D	TpMuguga_02g00751	<1503521..>1503874	Theileria parva strain Muguga	3501937
TpMuguga_02g00752	mRNA	TpMuguga_02g00752	NC_007345.1	1504045	1505500	D	TpMuguga_02g00752	<1504045..1505500	Theileria parva strain Muguga	3501938
TpMuguga_02g00753	mRNA	dnaK	NC_007345.1	1505514	1507838	R	TpMuguga_02g00753	complement(1505514..1507838)	Theileria parva strain Muguga	3501939
TpMuguga_02g00754	mRNA	TpMuguga_02g00754	NC_007345.1	1508272	1508895	D	TpMuguga_02g00754	join(1508272..1508561,1508595..1508622,1508689..1508764,1508826..>1508895)	Theileria parva strain Muguga	3501940
TpMuguga_02g00755	mRNA	TpMuguga_02g00755	NC_007345.1	1508946	1510065	D	TpMuguga_02g00755	join(<1508946..1509733,1509764..1509831,1509887..>1510065)	Theileria parva strain Muguga	3501941
TpMuguga_02g02635	mRNA	TpMuguga_02g02635	NC_007345.1	1510676	1512225	R	TpMuguga_02g02635	complement(join(<1510676..1510759,1510792..1510848,1510884..1511093,1511125..1511272,1511302..1511390,1511442..1511537,1511610..1511744,1511862..1512002,1512071..1512225))	Theileria parva strain Muguga	3501943
TpMuguga_02g00758	mRNA	TpMuguga_02g00758	NC_007345.1	1512380	1514450	R	TpMuguga_02g00758	complement(1512380..1514450)	Theileria parva strain Muguga	3502012
TpMuguga_02g00759	mRNA	TpMuguga_02g00759	NC_007345.1	1514951	1516618	R	TpMuguga_02g00759	complement(join(<1514951..1515249,1515286..>1516618))	Theileria parva strain Muguga	3502013
TpMuguga_02g00760	mRNA	TpMuguga_02g00760	NC_007345.1	1517116	1521111	R	TpMuguga_02g00760	complement(<1517116..>1521111)	Theileria parva strain Muguga	3502014
TpMuguga_02g00761	mRNA	TpMuguga_02g00761	NC_007345.1	1521144	1525800	R	TpMuguga_02g00761	complement(join(<1521144..1521192,1521287..>1525800))	Theileria parva strain Muguga	3502015
TpMuguga_02g00762	mRNA	TpMuguga_02g00762	NC_007345.1	1527624	1532514	R	TpMuguga_02g00762	complement(join(<1527624..1527692,1527724..1530225,1530268..1531368,1531492..>1532514))	Theileria parva strain Muguga	3502016
TpMuguga_02g00763	mRNA	TpMuguga_02g00763	NC_007345.1	1532597	1535325	R	TpMuguga_02g00763	complement(join(<1532597..1532636,1532657..1533020,1533084..>1535325))	Theileria parva strain Muguga	3502017
TpMuguga_02g00764	mRNA	TpMuguga_02g00764	NC_007345.1	1536084	1537982	R	TpMuguga_02g00764	complement(join(1536084..1536340,1536465..1536638,1536710..1536760,1536793..1536862,1536894..1537004,1537031..1537264,1537387..1537626,1537756..1537982))	Theileria parva strain Muguga	3502018
TpMuguga_02g02095	mRNA	TpMuguga_02g02095	NC_007345.1	1538158	1538824	D	TpMuguga_02g02095	1538158..1538824	Theileria parva strain Muguga	86047688
TpMuguga_02g00766	mRNA	polr1c	NC_007345.1	1539097	1540960	D	TpMuguga_02g00766	join(1539097..1539444,1539588..1539684,1539716..1539802,1539878..1539996,1540172..1540271,1540349..1540435,1540529..1540633,1540665..1540711,1540898..>1540960)	Theileria parva strain Muguga	3501968
TpMuguga_02g00767	mRNA	TpMuguga_02g00767	NC_007345.1	1541039	1541977	R	TpMuguga_02g00767	complement(join(1541039..1541373,1541494..1541578,1541662..1541745,1541781..1541977))	Theileria parva strain Muguga	3501969
TpMuguga_02g00768	mRNA	rpn5b	NC_007345.1	1541978	1544090	R	TpMuguga_02g00768	complement(join(1541978..1542134,1542247..1542386,1542518..1542844,1542925..1543254,1543373..1543786,1543914..1544090))	Theileria parva strain Muguga	3501970
TpMuguga_02g00769	mRNA	TpMuguga_02g00769	NC_007345.1	1544160	1545629	D	TpMuguga_02g00769	join(1544160..1545168,1545285..1545629)	Theileria parva strain Muguga	3501971
TpMuguga_02g00770	mRNA	TpMuguga_02g00770	NC_007345.1	1545686	1547531	R	TpMuguga_02g00770	complement(join(1545686..1546352,1546546..1547371,1547484..>1547531))	Theileria parva strain Muguga	3501972
TpMuguga_02g00771	mRNA	gyrA	NC_007345.1	1547734	1551808	R	TpMuguga_02g00771	complement(join(1547734..1548063,1548094..1548255,1548401..1548577,1548762..1549523,1549631..1550033,1550118..1550217,1550319..1550546,1550577..1550713,1550794..1550863,1550931..1551160,1551273..1551808))	Theileria parva strain Muguga	3501732
TpMuguga_02g00772	mRNA	ATP9B	NC_007345.1	1552084	1556593	D	TpMuguga_02g00772	join(1552084..1552545,1552578..1552650,1552773..1555168,1555379..1556593)	Theileria parva strain Muguga	3501733
TpMuguga_02g00773	mRNA	TpMuguga_02g00773	NC_007345.1	1556740	1557350	R	TpMuguga_02g00773	complement(<1556740..1557350)	Theileria parva strain Muguga	3501734
TpMuguga_02g00774	mRNA	TpMuguga_02g00774	NC_007345.1	1557509	1559267	R	TpMuguga_02g00774	complement(join(<1557509..1557633,1557698..>1559267))	Theileria parva strain Muguga	3501735
TpMuguga_02g02205	mRNA	TpMuguga_02g02205	NC_007345.1	1559334	1559855	R	TpMuguga_02g02205	complement(<1559334..>1559855)	Theileria parva strain Muguga	86047696
TpMuguga_02g02630	mRNA	TpMuguga_02g02630	NC_007345.1	1559963	1560783	R	TpMuguga_02g02630	complement(join(<1559963..1560036,1560123..1560392,1560434..1560572,1560605..1560783))	Theileria parva strain Muguga	3501736
TpMuguga_02g02540	mRNA	TpMuguga_02g02540	NC_007345.1	1560804	1562993	R	TpMuguga_02g02540	complement(join(1560804..1560891,1560922..1561037,1561076..1561145,1561253..1561937,1562047..1562539,1562641..1562767,1562914..1562993))	Theileria parva strain Muguga	3501641
TpMuguga_02g02340	mRNA	TpMuguga_02g02340	NC_007345.1	1563038	1568124	R	TpMuguga_02g02340	complement(1563038..>1568124)	Theileria parva strain Muguga	86047710
TpMuguga_02g00777	mRNA	Zdhhc3	NC_007345.1	1568225	1569332	R	TpMuguga_02g00777	complement(join(<1568225..1568342,1568383..1568558,1568588..1568710,1568743..1568804,1568862..1568984,1569018..1569142,1569173..1569231,1569265..1569283,1569313..>1569332))	Theileria parva strain Muguga	3501642
TpMuguga_02g02275	mRNA	TpMuguga_02g02275	NC_007345.1	1569366	1569986	D	TpMuguga_02g02275	join(1569366..1569486,1569529..1569620,1569648..1569759,1569819..>1569986)	Theileria parva strain Muguga	86047701
TpMuguga_02g00778	mRNA	TpMuguga_02g00778	NC_007345.1	1570174	1571127	D	TpMuguga_02g00778	<1570174..>1571127	Theileria parva strain Muguga	3501643
TpMuguga_02g00779	mRNA	TpMuguga_02g00779	NC_007345.1	1571135	1571839	R	TpMuguga_02g00779	complement(join(1571135..1571221,1571253..1571329,1571361..1571408,1571440..1571839))	Theileria parva strain Muguga	3501644
TpMuguga_02g00780	mRNA	RpS2	NC_007345.1	1571863	1572938	D	TpMuguga_02g00780	join(1571863..1572002,1572168..1572938)	Theileria parva strain Muguga	3501645
TpMuguga_02g00781	mRNA	SFH3	NC_007345.1	1573720	1575197	D	TpMuguga_02g00781	join(1573720..1573847,1573947..1574080,1574136..1574235,1574320..1574500,1574615..1574956,1575052..1575197)	Theileria parva strain Muguga	3501646
TpMuguga_02g00782	mRNA	TpMuguga_02g00782	NC_007345.1	1576740	1580870	D	TpMuguga_02g00782	<1576740..>1580870	Theileria parva strain Muguga	3501665
TpMuguga_02g00783	mRNA	isy1	NC_007345.1	1581394	1582633	R	TpMuguga_02g00783	complement(join(1581394..1581678,1581753..1582633))	Theileria parva strain Muguga	3501666
TpMuguga_02g00784	mRNA	HCCS	NC_007345.1	1582470	1583578	D	TpMuguga_02g00784	join(1582470..1582807,1582935..1583094,1583181..1583267,1583348..1583578)	Theileria parva strain Muguga	3501667
TpMuguga_02g00785	mRNA	TpMuguga_02g00785	NC_007345.1	1583893	1585935	D	TpMuguga_02g00785	<1583893..>1585935	Theileria parva strain Muguga	3501668
TpMuguga_02g00786	mRNA	ASF1	NC_007345.1	1586090	1587303	R	TpMuguga_02g00786	complement(join(1586090..1586541,1586779..1587303))	Theileria parva strain Muguga	3501669
TpMuguga_02g00787	mRNA	smg1	NC_007345.1	1587333	1594302	D	TpMuguga_02g00787	join(1587333..1593210,1593444..1594302)	Theileria parva strain Muguga	3501670
TpMuguga_02g00788	mRNA	TpMuguga_02g00788	NC_007345.1	1594744	1596951	D	TpMuguga_02g00788	<1594744..>1596951	Theileria parva strain Muguga	3501671
TpMuguga_02g00789	mRNA	TpMuguga_02g00789	NC_007345.1	1597163	1597830	R	TpMuguga_02g00789	complement(<1597163..1597830)	Theileria parva strain Muguga	3501458
TpMuguga_02g00790	mRNA	Snip1	NC_007345.1	1598080	1599169	R	TpMuguga_02g00790	complement(join(1598080..1598164,1598225..1598308,1598402..1598537,1598729..1598810,1598876..1598955,1599037..1599169))	Theileria parva strain Muguga	3501459
TpMuguga_02g02320	mRNA	TpMuguga_02g02320	NC_007345.1	1599168	1600241	R	TpMuguga_02g02320	complement(1599168..1600241)	Theileria parva strain Muguga	86047707
TpMuguga_02g00791	mRNA	TpMuguga_02g00791	NC_007345.1	1600263	1602077	D	TpMuguga_02g00791	join(1600263..1601102,1601291..1602077)	Theileria parva strain Muguga	3501460
TpMuguga_02g00792	mRNA	TpMuguga_02g00792	NC_007345.1	1603231	1603978	R	TpMuguga_02g00792	complement(join(1603231..1603475,1603634..1603978))	Theileria parva strain Muguga	3501461
TpMuguga_02g02625	mRNA	TpMuguga_02g02625	NC_007345.1	1603955	1606405	R	TpMuguga_02g02625	complement(join(1603955..1604899,1604982..1605077,1605360..1606405))	Theileria parva strain Muguga	3501463
TpMuguga_02g00795	mRNA	TpMuguga_02g00795	NC_007345.1	1606460	1609772	D	TpMuguga_02g00795	join(1606460..1606698,1606820..1607285,1607566..1607618,1607648..1607823,1608049..1608572,1608897..1609379,1609580..1609772)	Theileria parva strain Muguga	3501464
TpMuguga_02g00796	mRNA	TpMuguga_02g00796	NC_007345.1	1610354	1612421	D	TpMuguga_02g00796	join(1610354..1610966,1611060..1611692,1611916..>1612421)	Theileria parva strain Muguga	3502265
TpMuguga_02g00797	mRNA	TpMuguga_02g00797	NC_007345.1	1612698	1623647	D	TpMuguga_02g00797	<1612698..>1623647	Theileria parva strain Muguga	3502266
TpMuguga_02g02025	mRNA	TpMuguga_02g02025	NC_007345.1	1623708	1624109	R	TpMuguga_02g02025	complement(join(1623708..1623887,1623970..1624109))	Theileria parva strain Muguga	86047679
TpMuguga_02g00798	mRNA	ctu1	NC_007345.1	1624327	1626199	D	TpMuguga_02g00798	join(1624327..1625749,1625959..1626199)	Theileria parva strain Muguga	3502267
TpMuguga_02g00799	mRNA	ryh1	NC_007345.1	1626200	1627737	D	TpMuguga_02g00799	join(1626200..1626289,1626684..1627007,1627081..1627141,1627191..1627230,1627388..1627505,1627631..>1627737)	Theileria parva strain Muguga	3502268
TpMuguga_02g00800	mRNA	TpMuguga_02g00800	NC_007345.1	1627726	1628761	D	TpMuguga_02g00800	join(1627726..1628159,1628262..1628456,1628512..1628761)	Theileria parva strain Muguga	3502269
TpMuguga_02g00801	mRNA	RPL18	NC_007345.1	1628835	1629759	R	TpMuguga_02g00801	complement(join(1628835..1629146,1629354..1629609,1629681..1629759))	Theileria parva strain Muguga	3502270
TpMuguga_02g00802	mRNA	TpMuguga_02g00802	NC_007345.1	1629853	1635457	D	TpMuguga_02g00802	join(<1629853..1629859,1630143..>1635457)	Theileria parva strain Muguga	3502233
TpMuguga_02g00803	mRNA	RPL18A	NC_007345.1	1636222	1636865	R	TpMuguga_02g00803	complement(1636222..1636865)	Theileria parva strain Muguga	3502234
TpMuguga_02g00804	mRNA	TpMuguga_02g00804	NC_007345.1	1637277	1638090	D	TpMuguga_02g00804	join(1637277..1637645,1637805..1638090)	Theileria parva strain Muguga	3502235
TpMuguga_02g00805	mRNA	TpMuguga_02g00805	NC_007345.1	1638207	1639027	D	TpMuguga_02g00805	1638207..1639027	Theileria parva strain Muguga	3502236
TpMuguga_02g00806	mRNA	TpMuguga_02g00806	NC_007345.1	1639045	1640078	R	TpMuguga_02g00806	complement(join(1639045..1639409,1639500..1640078))	Theileria parva strain Muguga	3502237
TpMuguga_02g00807	mRNA	Ncl	NC_007345.1	1640277	1642527	D	TpMuguga_02g00807	join(1640277..1640463,1640579..1641505,1641740..1642527)	Theileria parva strain Muguga	3502238
TpMuguga_02g00808	mRNA	TpMuguga_02g00808	NC_007345.1	1642787	1644240	D	TpMuguga_02g00808	join(1642787..1642901,1642933..1643018,1643048..1643325,1643376..1643440,1643473..1643536,1643571..1643797,1643839..1643926,1643959..>1644240)	Theileria parva strain Muguga	3502239
TpMuguga_02g00963	mRNA	TpMuguga_02g00963	NC_007345.1	1644402	1646860	R	TpMuguga_02g00963	complement(1644402..>1646860)	Theileria parva strain Muguga	3502362
TpMuguga_02g00809	mRNA	Ttll11	NC_007345.1	1647161	1649461	R	TpMuguga_02g00809	complement(<1647161..>1649461)	Theileria parva strain Muguga	3502363
TpMuguga_02g00810	mRNA	FNTB	NC_007345.1	1649484	1651377	D	TpMuguga_02g00810	join(1649484..1650406,1650504..1651377)	Theileria parva strain Muguga	3502364
TpMuguga_02g00811	mRNA	TpMuguga_02g00811	NC_007345.1	1651395	1652180	R	TpMuguga_02g00811	complement(join(1651395..1651473,1651526..1652180))	Theileria parva strain Muguga	3502365
TpMuguga_02g00812	mRNA	TpMuguga_02g00812	NC_007345.1	1652181	1653997	R	TpMuguga_02g00812	complement(1652181..>1653997)	Theileria parva strain Muguga	3502366
TpMuguga_02g00813	mRNA	TpMuguga_02g00813	NC_007345.1	1654716	1655596	D	TpMuguga_02g00813	join(1654716..1655074,1655111..>1655596)	Theileria parva strain Muguga	3502367
TpMuguga_02g00814	mRNA	TpMuguga_02g00814	NC_007345.1	1655685	1656584	D	TpMuguga_02g00814	<1655685..>1656584	Theileria parva strain Muguga	3502368
TpMuguga_02g00815	mRNA	TpMuguga_02g00815	NC_007345.1	1656696	1657653	R	TpMuguga_02g00815	complement(1656696..1657653)	Theileria parva strain Muguga	3502369
TpMuguga_02g00816	mRNA	TpMuguga_02g00816	NC_007345.1	1657724	1658620	R	TpMuguga_02g00816	complement(<1657724..>1658620)	Theileria parva strain Muguga	3501440
TpMuguga_02g00817	mRNA	TpMuguga_02g00817	NC_007345.1	1658909	1661286	R	TpMuguga_02g00817	complement(join(1658909..1659298,1659333..1659748,1659830..1660581,1660614..1660769,1660799..1661098,1661193..>1661286))	Theileria parva strain Muguga	3501441
TpMuguga_02g00818	mRNA	TpMuguga_02g00818	NC_007345.1	1661707	1663570	R	TpMuguga_02g00818	complement(1661707..>1663570)	Theileria parva strain Muguga	3501442
TpMuguga_02g00819	mRNA	TpMuguga_02g00819	NC_007345.1	1663768	1665115	R	TpMuguga_02g00819	complement(1663768..>1665115)	Theileria parva strain Muguga	3501443
TpMuguga_02g00820	mRNA	TpMuguga_02g00820	NC_007345.1	1665426	1666992	R	TpMuguga_02g00820	complement(join(<1665426..1666471,1666581..1666728,1666894..>1666992))	Theileria parva strain Muguga	3501444
TpMuguga_02g00821	mRNA	USP39	NC_007345.1	1667154	1669814	R	TpMuguga_02g00821	complement(join(<1667154..1667227,1667342..1667524,1667666..1667867,1667977..1668046,1668106..1668193,1668224..1668341,1668446..1668607,1668638..1668693,1668758..1668854,1668909..1669045,1669077..1669211,1669307..1669814))	Theileria parva strain Muguga	3501445
TpMuguga_02g02440	mRNA	TpMuguga_02g02440	NC_007345.1	1669904	1670092	R	TpMuguga_02g02440	complement(<1669904..>1670092)	Theileria parva strain Muguga	86047721
TpMuguga_02g02335	mRNA	TpMuguga_02g02335	NC_007345.1	1670369	1670566	D	TpMuguga_02g02335	<1670369..>1670566	Theileria parva strain Muguga	86047709
TpMuguga_02g02430	mRNA	TpMuguga_02g02430	NC_007345.1	1670743	1673400	D	TpMuguga_02g02430	join(1670743..1670946,1671244..1671473,1671543..1671657,1671746..1671827,1671860..1671924,1672021..1672215,1672288..1672475,1672560..1673083,1673237..1673400)	Theileria parva strain Muguga	3501446
TpMuguga_02g00824	mRNA	TpMuguga_02g00824	NC_007345.1	1673429	1674500	D	TpMuguga_02g00824	join(<1673429..1673518,1673551..1673634,1673752..1673784,1673815..1673991,1674185..1674322,1674417..1674500)	Theileria parva strain Muguga	3501448
TpMuguga_02g00825	mRNA	TpMuguga_02g00825	NC_007345.1	1675005	1676823	D	TpMuguga_02g00825	join(1675005..1675493,1675615..1675757,1675878..1675946,1676179..1676369,1676451..1676505,1676536..1676641,1676727..1676823)	Theileria parva strain Muguga	3501449
TpMuguga_02g00826	mRNA	CTP	NC_007345.1	1677099	1680013	R	TpMuguga_02g00826	complement(join(1677099..1677286,1677485..1678273,1678375..1678519,1678679..1678770,1678987..1679330,1679509..1680013))	Theileria parva strain Muguga	3501450
TpMuguga_02g00827	mRNA	PRPF40A	NC_007345.1	1680014	1681784	R	TpMuguga_02g00827	complement(join(1680014..1680085,1680371..1680517,1680637..1681180,1681258..1681562,1681716..>1681784))	Theileria parva strain Muguga	3501451
TpMuguga_02g02545	mRNA	ASNAP2	NC_007345.1	1681848	1683573	R	TpMuguga_02g02545	complement(join(<1681848..1681922,1682011..1682068,1682172..1682224,1682337..1682525,1682626..1682888,1682997..1683119,1683306..1683573))	Theileria parva strain Muguga	3501482
TpMuguga_02g00830	mRNA	CDIPT	NC_007345.1	1683692	1685104	R	TpMuguga_02g00830	complement(join(1683692..1683896,1683965..1684011,1684044..1684139,1684239..1684315,1684347..1684401,1684484..1684582,1684750..1684884,1684986..1685104))	Theileria parva strain Muguga	3501484
TpMuguga_02g00831	mRNA	Trmt61a	NC_007345.1	1685136	1686638	D	TpMuguga_02g00831	join(<1685136..1685330,1685499..1685597,1685657..1685726,1685756..1685858,1685975..1686158,1686306..1686390,1686420..1686638)	Theileria parva strain Muguga	3501485
TpMuguga_02g00832	mRNA	TpMuguga_02g00832	NC_007345.1	1686695	1688787	R	TpMuguga_02g00832	complement(join(1686695..1686836,1686965..1687489,1687592..1687850,1687938..1688787))	Theileria parva strain Muguga	3501486
TpMuguga_02g00833	mRNA	glkA	NC_007345.1	1688883	1690319	R	TpMuguga_02g00833	complement(join(<1688883..1688940,1688972..1689022,1689062..1689141,1689172..1689217,1689317..1689370,1689402..1689508,1689596..1689714,1689846..1689891,1689906..1689996,1690030..>1690319))	Theileria parva strain Muguga	3501587
TpMuguga_02g00834	mRNA	TpMuguga_02g00834	NC_007345.1	1690882	1691307	D	TpMuguga_02g00834	join(1690882..1691069,1691106..1691124,1691154..1691203,1691234..1691307)	Theileria parva strain Muguga	3501588
TpMuguga_02g00835	mRNA	TpMuguga_02g00835	NC_007345.1	1691308	1692593	R	TpMuguga_02g00835	complement(join(1691308..1691444,1691509..1691579,1691610..1691750,1691836..1692003,1692062..1692396,1692469..1692593))	Theileria parva strain Muguga	3501589
TpMuguga_02g00836	mRNA	TpMuguga_02g00836	NC_007345.1	1692427	1693634	D	TpMuguga_02g00836	join(1692427..1692976,1693033..1693146,1693177..1693265,1693333..1693391,1693446..1693634)	Theileria parva strain Muguga	3501590
TpMuguga_02g00837	mRNA	TpMuguga_02g00837	NC_007345.1	1693771	1695622	D	TpMuguga_02g00837	join(1693771..1693885,1693974..1694021,1694071..1694159,1694213..1694285,1694380..1694925,1695001..1695213,1695264..1695332,1695449..1695565,1695597..>1695622)	Theileria parva strain Muguga	3501591
TpMuguga_02g00838	mRNA	pyrG	NC_007345.1	1695640	1698093	D	TpMuguga_02g00838	join(1695640..1695903,1695933..1696097,1696223..1696495,1696576..1696689,1696734..1696817,1696948..1697179,1697212..1697271,1697436..1698093)	Theileria parva strain Muguga	3501954
TpMuguga_02g00839	mRNA	PSME3	NC_007345.1	1698214	1699355	D	TpMuguga_02g00839	join(<1698214..1698375,1698414..1698530,1698571..1698657,1698767..1698927,1699001..1699055,1699086..1699184,1699296..>1699355)	Theileria parva strain Muguga	3501955
TpMuguga_02g00840	mRNA	TpMuguga_02g00840	NC_007345.1	1699605	1701037	D	TpMuguga_02g00840	1699605..1701037	Theileria parva strain Muguga	3501956
TpMuguga_02g00841	mRNA	TpMuguga_02g00841	NC_007345.1	1701468	1702837	D	TpMuguga_02g00841	<1701468..1702837	Theileria parva strain Muguga	3501957
TpMuguga_02g00842	mRNA	TpMuguga_02g00842	NC_007345.1	1706767	1708768	R	TpMuguga_02g00842	complement(join(<1706767..1706862,1706893..1706947,1706978..1707102,1707134..1708768))	Theileria parva strain Muguga	3501958
TpMuguga_02g00843	mRNA	TpMuguga_02g00843	NC_007345.1	1708732	1711282	D	TpMuguga_02g00843	join(1708732..1709212,1709247..1709611,1709645..1709981,1710012..1710084,1710115..1710471,1710503..1710650,1710681..1710752,1710788..1711282)	Theileria parva strain Muguga	3501959
TpMuguga_02g00844	mRNA	TpMuguga_02g00844	NC_007345.1	1711205	1712621	R	TpMuguga_02g00844	complement(join(1711205..1711289,1711320..1711594,1711626..1711680,1711711..1711794,1711825..1711869,1711900..1712007,1712051..1712090,1712120..1712621))	Theileria parva strain Muguga	3501889
TpMuguga_02g02150	mRNA	TpMuguga_02g02150	NC_007345.1	1712267	1713744	D	TpMuguga_02g02150	join(1712267..1712314,1712393..1712519,1712551..1712614,1712645..1712727,1712761..1713013,1713050..1713156,1713187..1713744)	Theileria parva strain Muguga	3501891
TpMuguga_02g00847	mRNA	TpMuguga_02g00847	NC_007345.1	1713660	1714871	R	TpMuguga_02g00847	complement(join(<1713660..1713803,1713834..1714262,1714317..1714511,1714564..1714871))	Theileria parva strain Muguga	3501892
TpMuguga_02g00848	mRNA	ATP8A1	NC_007345.1	1715469	1724661	D	TpMuguga_02g00848	join(1715469..1716399,1716428..1719223,1719374..1719868,1720059..1720652,1720801..1721478,1721571..1722401,1722552..1722688,1722719..1723008,1723084..1723318,1723510..1723846,1723923..1724017,1724137..1724528,1724565..1724661)	Theileria parva strain Muguga	3501893
TpMuguga_02g00849	mRNA	TpMuguga_02g00849	NC_007345.1	1724859	1725548	D	TpMuguga_02g00849	<1724859..1725548	Theileria parva strain Muguga	3501919
TpMuguga_02g00850	mRNA	TpMuguga_02g00850	NC_007345.1	1725631	1726182	R	TpMuguga_02g00850	complement(<1725631..>1726182)	Theileria parva strain Muguga	3501920
TpMuguga_02g00851	mRNA	TpMuguga_02g00851	NC_007345.1	1726526	1727649	R	TpMuguga_02g00851	complement(join(1726526..1726616,1726813..1726965,1727142..1727213,1727388..>1727649))	Theileria parva strain Muguga	3501921
TpMuguga_02g00852	mRNA	TpMuguga_02g00852	NC_007345.1	1727736	1728203	R	TpMuguga_02g00852	complement(<1727736..>1728203)	Theileria parva strain Muguga	3501922
TpMuguga_02g00853	mRNA	pph-1	NC_007345.1	1728375	1730625	D	TpMuguga_02g00853	join(1728375..1729040,1729300..1729410,1729540..1729651,1729867..1730050,1730344..1730462,1730513..1730625)	Theileria parva strain Muguga	3501923
TpMuguga_02g00854	mRNA	TpMuguga_02g00854	NC_007345.1	1730766	1732691	R	TpMuguga_02g00854	complement(join(<1730766..1732628,1732662..>1732691))	Theileria parva strain Muguga	3501924
TpMuguga_02g00855	mRNA	TpMuguga_02g00855	NC_007345.1	1733358	1735553	R	TpMuguga_02g00855	complement(<1733358..>1735553)	Theileria parva strain Muguga	3501925
TpMuguga_02g00856	mRNA	TpMuguga_02g00856	NC_007345.1	1735939	1737303	R	TpMuguga_02g00856	complement(<1735939..>1737303)	Theileria parva strain Muguga	3502059
TpMuguga_02g00857	mRNA	TpMuguga_02g00857	NC_007345.1	1738151	1738879	R	TpMuguga_02g00857	complement(<1738151..>1738879)	Theileria parva strain Muguga	3502060
TpMuguga_02g00858	mRNA	GPD	NC_007345.1	1740271	1741287	R	TpMuguga_02g00858	complement(<1740271..>1741287)	Theileria parva strain Muguga	3502061
TpMuguga_02g00859	mRNA	TpMuguga_02g00859	NC_007345.1	1741639	1743309	R	TpMuguga_02g00859	complement(<1741639..>1743309)	Theileria parva strain Muguga	3502062
TpMuguga_02g00860	mRNA	TpMuguga_02g00860	NC_007345.1	1743886	1744871	R	TpMuguga_02g00860	complement(1743886..1744871)	Theileria parva strain Muguga	3502063
TpMuguga_02g00861	mRNA	Ppm1g	NC_007345.1	1744849	1747799	D	TpMuguga_02g00861	join(1744849..1745479,1745564..1745771,1746096..1746542,1746730..1747799)	Theileria parva strain Muguga	3502064
TpMuguga_02g02505	mRNA	TpMuguga_02g02505	NC_007345.1	1748807	1750620	D	TpMuguga_02g02505	join(<1748807..1749569,1749971..>1750620)	Theileria parva strain Muguga	3502066
TpMuguga_02g00864	mRNA	TpMuguga_02g00864	NC_007345.1	1750734	1752540	D	TpMuguga_02g00864	join(1750734..1751504,1751846..1752540)	Theileria parva strain Muguga	3502140
TpMuguga_02g00865	mRNA	TpMuguga_02g00865	NC_007345.1	1752958	1753557	R	TpMuguga_02g00865	complement(<1752958..>1753557)	Theileria parva strain Muguga	3502141
TpMuguga_02g00866	mRNA	TpMuguga_02g00866	NC_007345.1	1753835	1754524	R	TpMuguga_02g00866	complement(<1753835..>1754524)	Theileria parva strain Muguga	3502142
TpMuguga_02g00867	mRNA	rps14	NC_007345.1	1754911	1756483	R	TpMuguga_02g00867	complement(join(1754911..1755052,1755688..1755909,1755969..1756115,1756230..1756483))	Theileria parva strain Muguga	3502143
TpMuguga_02g00868	mRNA	TpMuguga_02g00868	NC_007345.1	1756550	1761415	D	TpMuguga_02g00868	join(1756550..1756760,1757004..1757600,1757913..>1761415)	Theileria parva strain Muguga	3502144
TpMuguga_02g02525	mRNA	dare	NC_007345.1	1763005	1764940	D	TpMuguga_02g02525	join(1763005..1763335,1763493..1764940)	Theileria parva strain Muguga	3502145
TpMuguga_02g00870	mRNA	TpMuguga_02g00870	NC_007345.1	1765082	1767790	D	TpMuguga_02g00870	<1765082..1767790	Theileria parva strain Muguga	3502146
TpMuguga_02g00871	mRNA	TpMuguga_02g00871	NC_007345.1	1767980	1768471	D	TpMuguga_02g00871	<1767980..>1768471	Theileria parva strain Muguga	3502159
TpMuguga_02g02145	mRNA	TpMuguga_02g02145	NC_007345.1	1768470	1769585	D	TpMuguga_02g02145	1768470..1769585	Theileria parva strain Muguga	86047691
TpMuguga_02g00872	mRNA	TpMuguga_02g00872	NC_007345.1	1770334	1771611	D	TpMuguga_02g00872	join(<1770334..1770981,1771564..>1771611)	Theileria parva strain Muguga	3502160
TpMuguga_02g00873	mRNA	TpMuguga_02g00873	NC_007345.1	1771737	1772811	R	TpMuguga_02g00873	complement(join(1771737..1772094,1772317..1772425,1772517..1772811))	Theileria parva strain Muguga	3502161
TpMuguga_02g00874	mRNA	TpMuguga_02g00874	NC_007345.1	1772773	1773159	D	TpMuguga_02g00874	join(1772773..1772986,1773092..>1773159)	Theileria parva strain Muguga	3502162
TpMuguga_02g00875	mRNA	TpMuguga_02g00875	NC_007345.1	1773182	1774216	D	TpMuguga_02g00875	<1773182..>1774216	Theileria parva strain Muguga	3502163
TpMuguga_02g00876	mRNA	TpMuguga_02g00876	NC_007345.1	1776214	1783284	R	TpMuguga_02g00876	complement(<1776214..>1783284)	Theileria parva strain Muguga	3502164
TpMuguga_02g00877	mRNA	TpMuguga_02g00877	NC_007345.1	1783854	1784684	D	TpMuguga_02g00877	<1783854..>1784684	Theileria parva strain Muguga	3502165
TpMuguga_02g00878	mRNA	TpMuguga_02g00878	NC_007345.1	1785083	1786684	D	TpMuguga_02g00878	<1785083..1786684	Theileria parva strain Muguga	3502166
TpMuguga_02g00879	mRNA	TpMuguga_02g00879	NC_007345.1	1786437	1787030	R	TpMuguga_02g00879	complement(<1786437..>1787030)	Theileria parva strain Muguga	3502198
TpMuguga_02g00880	mRNA	TpMuguga_02g00880	NC_007345.1	1787131	1788152	R	TpMuguga_02g00880	complement(join(<1787131..1787231,1787263..1787312,1787456..1787549,1787606..>1788152))	Theileria parva strain Muguga	3502199
TpMuguga_02g00881	mRNA	cwf26	NC_007345.1	1788293	1789663	R	TpMuguga_02g00881	complement(join(<1788293..1788355,1788511..1788626,1788730..1788812,1788847..1788962,1788994..1789026,1789185..1789269,1789423..1789471,1789501..>1789663))	Theileria parva strain Muguga	3502200
TpMuguga_02g02085	mRNA	TpMuguga_02g02085	NC_007345.1	1789733	1790185	D	TpMuguga_02g02085	<1789733..1790185	Theileria parva strain Muguga	86047686
TpMuguga_02g00882	mRNA	TpMuguga_02g00882	NC_007345.1	1790166	1791173	R	TpMuguga_02g00882	complement(join(1790166..1790519,1790557..1790665,1790765..1791173))	Theileria parva strain Muguga	3502201
TpMuguga_02g00883	mRNA	TpMuguga_02g00883	NC_007345.1	1791243	1793536	R	TpMuguga_02g00883	complement(join(1791243..1791566,1791616..1791678,1791710..1791846,1791876..1792012,1792065..1792204,1792260..1792315,1792357..1792846,1792881..1792934,1792964..1793019,1793094..1793362,1793441..>1793536))	Theileria parva strain Muguga	3502202
TpMuguga_02g02220	mRNA	TpMuguga_02g02220	NC_007345.1	1793612	1794331	D	TpMuguga_02g02220	1793612..>1794331	Theileria parva strain Muguga	86047697
TpMuguga_02g00884	mRNA	TpMuguga_02g00884	NC_007345.1	1794363	1796963	R	TpMuguga_02g00884	complement(<1794363..>1796963)	Theileria parva strain Muguga	3502203
TpMuguga_02g00885	mRNA	TpMuguga_02g00885	NC_007345.1	1797071	1799381	R	TpMuguga_02g00885	complement(join(<1797071..1797146,1797193..>1799381))	Theileria parva strain Muguga	3502285
TpMuguga_02g00886	mRNA	TpMuguga_02g00886	NC_007345.1	1799523	1801440	R	TpMuguga_02g00886	complement(join(1799523..1799627,1799760..1799915,1800003..1800753,1800790..1800920,1800968..1801309,1801344..1801440))	Theileria parva strain Muguga	3502286
TpMuguga_02g00887	mRNA	TpMuguga_02g00887	NC_007345.1	1801431	1802544	R	TpMuguga_02g00887	complement(join(<1801431..1801508,1801538..1802164,1802214..1802330,1802458..1802544))	Theileria parva strain Muguga	3502287
TpMuguga_02g02070	mRNA	TpMuguga_02g02070	NC_007345.1	1803286	1803980	D	TpMuguga_02g02070	1803286..1803980	Theileria parva strain Muguga	86047684
TpMuguga_02g00888	mRNA	TpMuguga_02g00888	NC_007345.1	1804342	1805737	D	TpMuguga_02g00888	1804342..1805737	Theileria parva strain Muguga	3502288
TpMuguga_02g00889	mRNA	TpMuguga_02g00889	NC_007345.1	1805855	1806597	D	TpMuguga_02g00889	1805855..1806597	Theileria parva strain Muguga	3502289
TpMuguga_02g00890	mRNA	TpMuguga_02g00890	NC_007345.1	1807027	1807818	D	TpMuguga_02g00890	<1807027..>1807818	Theileria parva strain Muguga	3502290
TpMuguga_02g00891	mRNA	TpMuguga_02g00891	NC_007345.1	1808375	1809504	D	TpMuguga_02g00891	join(<1808375..1808705,1808736..1809261,1809384..1809504)	Theileria parva strain Muguga	3502291
TpMuguga_02g00892	mRNA	TpMuguga_02g00892	NC_007345.1	1809647	1811026	D	TpMuguga_02g00892	1809647..1811026	Theileria parva strain Muguga	3502225
TpMuguga_02g00893	mRNA	RPT6A	NC_007345.1	1811394	1812758	D	TpMuguga_02g00893	1811394..>1812758	Theileria parva strain Muguga	3502226
TpMuguga_02g00894	mRNA	TpMuguga_02g00894	NC_007345.1	1813179	1814320	D	TpMuguga_02g00894	<1813179..1814320	Theileria parva strain Muguga	3502227
TpMuguga_02g00895	mRNA	TpMuguga_02g00895	NC_007345.1	1815164	1816360	D	TpMuguga_02g00895	1815164..1816360	Theileria parva strain Muguga	3502228
TpMuguga_02g00896	mRNA	TpMuguga_02g00896	NC_007345.1	1816779	1818197	D	TpMuguga_02g00896	<1816779..1818197	Theileria parva strain Muguga	3502229
TpMuguga_02g00897	mRNA	TpMuguga_02g00897	NC_007345.1	1818160	1822853	R	TpMuguga_02g00897	complement(join(1818160..1819482,1819529..1819639,1819766..>1822853))	Theileria parva strain Muguga	3502230
TpMuguga_02g00898	mRNA	TpMuguga_02g00898	NC_007345.1	1823618	1826976	R	TpMuguga_02g00898	complement(1823618..1826976)	Theileria parva strain Muguga	3502231
TpMuguga_02g00899	mRNA	TpMuguga_02g00899	NC_007345.1	1827585	1831805	D	TpMuguga_02g00899	<1827585..>1831805	Theileria parva strain Muguga	3502232
TpMuguga_02g00900	mRNA	TpMuguga_02g00900	NC_007345.1	1831928	1832679	D	TpMuguga_02g00900	join(<1831928..1832233,1832281..1832679)	Theileria parva strain Muguga	3502127
TpMuguga_02g00901	mRNA	CPR6	NC_007345.1	1832587	1834512	R	TpMuguga_02g00901	complement(join(1832587..1833215,1833284..1833821,1833851..1834026,1834061..1834134,1834169..1834512))	Theileria parva strain Muguga	3502128
TpMuguga_02g00902	mRNA	TpMuguga_02g00902	NC_007345.1	1834594	1836545	D	TpMuguga_02g00902	join(1834594..1835007,1835042..1836099,1836181..1836545)	Theileria parva strain Muguga	3502129
TpMuguga_02g00903	mRNA	ACT1	NC_007345.1	1836645	1838097	R	TpMuguga_02g00903	complement(join(1836645..1837821,1837914..1838097))	Theileria parva strain Muguga	3502130
TpMuguga_02g00904	mRNA	TpMuguga_02g00904	NC_007345.1	1838091	1839078	D	TpMuguga_02g00904	join(<1838091..1838205,1838925..1838972,1839026..>1839078)	Theileria parva strain Muguga	3502131
TpMuguga_02g00905	mRNA	TpMuguga_02g00905	NC_007345.1	1838693	1841224	D	TpMuguga_02g00905	join(1838693..1840314,1840375..1841224)	Theileria parva strain Muguga	3502132
TpMuguga_02g02075	mRNA	TpMuguga_02g02075	NC_007345.1	1841234	1841947	R	TpMuguga_02g02075	complement(join(1841234..1841522,1841583..1841725,1841756..1841837,1841902..>1841947))	Theileria parva strain Muguga	86047685
TpMuguga_02g00906	mRNA	tfdB	NC_007345.1	1841993	1844053	R	TpMuguga_02g00906	complement(join(<1841993..1842036,1842068..1842197,1842227..1842391,1842424..1842533,1842573..1842771,1842802..1842963,1842994..1843583,1843617..1843754,1843787..1844053))	Theileria parva strain Muguga	3502088
TpMuguga_02g00907	mRNA	TpMuguga_02g00907	NC_007345.1	1844054	1846546	R	TpMuguga_02g00907	complement(1844054..>1846546)	Theileria parva strain Muguga	3502089
TpMuguga_02g00908	mRNA	TpMuguga_02g00908	NC_007345.1	1847170	1848255	R	TpMuguga_02g00908	complement(join(1847170..1847862,1847892..1848255))	Theileria parva strain Muguga	3502090
TpMuguga_02g00909	mRNA	TpMuguga_02g00909	NC_007345.1	1848365	1849626	D	TpMuguga_02g00909	1848365..>1849626	Theileria parva strain Muguga	3502091
TpMuguga_02g00910	mRNA	TpMuguga_02g00910	NC_007345.1	1849963	1850757	D	TpMuguga_02g00910	1849963..>1850757	Theileria parva strain Muguga	3502092
TpMuguga_02g00911	mRNA	TpMuguga_02g00911	NC_007345.1	1850759	1851413	D	TpMuguga_02g00911	<1850759..1851413	Theileria parva strain Muguga	3502093
TpMuguga_02g00912	mRNA	FEN1	NC_007345.1	1851550	1853988	R	TpMuguga_02g00912	complement(join(<1851550..1852425,1852472..1852518,1852548..>1853988))	Theileria parva strain Muguga	3502094
TpMuguga_02g00913	mRNA	ZRANB2	NC_007345.1	1854062	1854623	R	TpMuguga_02g00913	complement(join(<1854062..1854199,1854260..1854332,1854365..1854419,1854455..1854519,1854583..>1854623))	Theileria parva strain Muguga	3501905
TpMuguga_02g00914	mRNA	TpMuguga_02g00914	NC_007345.1	1855556	1856101	D	TpMuguga_02g00914	<1855556..>1856101	Theileria parva strain Muguga	3501906
TpMuguga_02g00915	mRNA	TpMuguga_02g00915	NC_007345.1	1856103	1856723	D	TpMuguga_02g00915	<1856103..>1856723	Theileria parva strain Muguga	3501907
TpMuguga_02g00916	mRNA	TpMuguga_02g00916	NC_007345.1	1856912	1860808	D	TpMuguga_02g00916	join(<1856912..1857104,1857789..>1860808)	Theileria parva strain Muguga	3501908
TpMuguga_02g00917	mRNA	FIGNL1	NC_007345.1	1860869	1863334	R	TpMuguga_02g00917	complement(join(1860869..1862804,1862848..1863031,1863305..1863334))	Theileria parva strain Muguga	3501909
TpMuguga_02g00918	mRNA	yrhG	NC_007345.1	1863397	1864552	D	TpMuguga_02g00918	1863397..1864552	Theileria parva strain Muguga	3501910
TpMuguga_02g00919	mRNA	TpMuguga_02g00919	NC_007345.1	1865265	1870642	D	TpMuguga_02g00919	join(<1865265..1870450,1870507..1870642)	Theileria parva strain Muguga	3501911
TpMuguga_02g00920	mRNA	TMBIM6	NC_007345.1	1870697	1871784	D	TpMuguga_02g00920	join(<1870697..1870948,1870982..1871081,1871112..1871325,1871385..1871784)	Theileria parva strain Muguga	3501912
TpMuguga_02g00921	mRNA	TpMuguga_02g00921	NC_007345.1	1872074	1872774	D	TpMuguga_02g00921	1872074..>1872774	Theileria parva strain Muguga	3501851
TpMuguga_02g00922	mRNA	TpMuguga_02g00922	NC_007345.1	1872779	1875120	D	TpMuguga_02g00922	<1872779..1875120	Theileria parva strain Muguga	3501852
TpMuguga_02g00923	mRNA	ykt6	NC_007345.1	1875254	1875859	D	TpMuguga_02g00923	<1875254..>1875859	Theileria parva strain Muguga	3501853
TpMuguga_02g00924	mRNA	REV1	NC_007345.1	1876496	1878339	D	TpMuguga_02g00924	join(<1876496..1877763,1877793..1878339)	Theileria parva strain Muguga	3501854
TpMuguga_02g00925	mRNA	DRT101	NC_007345.1	1878475	1880646	R	TpMuguga_02g00925	complement(1878475..1880646)	Theileria parva strain Muguga	3501855
TpMuguga_02g00926	mRNA	FACE1	NC_007345.1	1881273	1883188	D	TpMuguga_02g00926	join(1881273..1881842,1881929..1882159,1882191..1882313,1882372..1883188)	Theileria parva strain Muguga	3501856
TpMuguga_02g00927	mRNA	PSMA1	NC_007345.1	1883398	1884622	D	TpMuguga_02g00927	join(<1883398..1883529,1883650..1883860,1883962..1884092,1884160..1884299,1884408..1884501,1884531..1884622)	Theileria parva strain Muguga	3501857
TpMuguga_02g00928	mRNA	FACE1	NC_007345.1	1884664	1886252	D	TpMuguga_02g00928	join(1884664..1885072,1885140..1885370,1885420..1885545,1885576..1885897,1885954..1886252)	Theileria parva strain Muguga	3501858
TpMuguga_02g00929	mRNA	FACE1	NC_007345.1	1886492	1888394	D	TpMuguga_02g00929	join(1886492..1887061,1887137..1887367,1887398..1887520,1887584..1888394)	Theileria parva strain Muguga	3501859
TpMuguga_02g00930	mRNA	PSMA1	NC_007345.1	1888604	1889840	D	TpMuguga_02g00930	join(<1888604..1888735,1888856..1889066,1889180..1889310,1889378..1889517,1889626..1889719,1889749..1889840)	Theileria parva strain Muguga	3501860
TpMuguga_02g02015	mRNA	TpMuguga_02g02015	NC_007345.1	1889869	1891156	D	TpMuguga_02g02015	join(<1889869..1889959,1889989..1890601,1890634..1890817,1890848..>1891156)	Theileria parva strain Muguga	86047678
TpMuguga_02g00931	mRNA	TpMuguga_02g00931	NC_007345.1	1891170	1895523	R	TpMuguga_02g00931	complement(join(1891170..1892438,1892513..1892972,1893015..1893138,1893204..1895135,1895167..1895382,1895415..>1895523))	Theileria parva strain Muguga	3501861
TpMuguga_02g00932	mRNA	TpMuguga_02g00932	NC_007345.1	1896020	1896643	D	TpMuguga_02g00932	join(1896020..1896464,1896504..1896643)	Theileria parva strain Muguga	3501862
TpMuguga_02g00933	mRNA	RBP47A	NC_007345.1	1897139	1899344	D	TpMuguga_02g00933	join(<1897139..1898392,1898494..1898830,1898908..>1899344)	Theileria parva strain Muguga	3501823
TpMuguga_02g00934	mRNA	EDE1	NC_007345.1	1899425	1901836	R	TpMuguga_02g00934	complement(join(1899425..1899597,1899698..1901836))	Theileria parva strain Muguga	3501824
TpMuguga_02g00935	mRNA	glmS	NC_007345.1	1901947	1905038	D	TpMuguga_02g00935	join(1901947..1902424,1902540..1903892,1903961..1904483,1904550..1905038)	Theileria parva strain Muguga	3501825
TpMuguga_02g00936	mRNA	TpMuguga_02g00936	NC_007345.1	1905132	1906114	R	TpMuguga_02g00936	complement(1905132..1906114)	Theileria parva strain Muguga	3501826
TpMuguga_02g00937	mRNA	CCT6	NC_007345.1	1906195	1908167	D	TpMuguga_02g00937	join(1906195..1907706,1907796..1908167)	Theileria parva strain Muguga	3501827
TpMuguga_02g00938	mRNA	TpMuguga_02g00938	NC_007345.1	1908684	1922971	D	TpMuguga_02g00938	join(1908684..1910751,1910862..1912683,1912768..1912916,1912952..1913414,1913503..1915797,1915834..1920245,1920346..1922971)	Theileria parva strain Muguga	3501828
TpMuguga_02g00939	mRNA	TpMuguga_02g00939	NC_007345.1	1922962	1924094	R	TpMuguga_02g00939	complement(1922962..>1924094)	Theileria parva strain Muguga	3501829
TpMuguga_02g00940	mRNA	ABCC2	NC_007345.1	1925046	1929825	D	TpMuguga_02g00940	1925046..1929825	Theileria parva strain Muguga	3501770
TpMuguga_02g00941	mRNA	TpMuguga_02g00941	NC_007345.1	1930009	1932994	D	TpMuguga_02g00941	join(1930009..1931359,1931389..1931479,1931522..1931687,1931717..1931886,1931919..1932078,1932107..1932181,1932213..1932278,1932308..1932413,1932444..1932567,1932598..1932718,1932816..1932994)	Theileria parva strain Muguga	3501771
TpMuguga_02g00942	mRNA	TpMuguga_02g00942	NC_007345.1	1932969	1934619	R	TpMuguga_02g00942	complement(join(1932969..1933925,1933957..1934619))	Theileria parva strain Muguga	3501772
TpMuguga_02g00943	mRNA	fcp1	NC_007345.1	1934762	1937677	R	TpMuguga_02g00943	complement(1934762..1937677)	Theileria parva strain Muguga	3501773
TpMuguga_02g00944	mRNA	PPP5C	NC_007345.1	1937768	1939752	R	TpMuguga_02g00944	complement(join(1937768..1937928,1938009..1938730,1938763..1938834,1938863..1938936,1938967..1939038,1939067..1939174,1939205..1939321,1939401..1939752))	Theileria parva strain Muguga	3501774
TpMuguga_02g00945	mRNA	TXNDC9	NC_007345.1	1939805	1941114	D	TpMuguga_02g00945	join(1939805..1940207,1940320..1940439,1940473..1940580,1940614..1940711,1940762..1940883,1940926..1940990,1941030..1941114)	Theileria parva strain Muguga	3501775
TpMuguga_02g00964	mRNA	TpMuguga_02g00964	NC_007345.1	1941104	1941800	D	TpMuguga_02g00964	join(1941104..1941344,1941408..1941598,1941636..>1941800)	Theileria parva strain Muguga	3501707
TpMuguga_02g00948	mRNA	TpMuguga_02g00948	NC_007345.1	1941736	1943100	R	TpMuguga_02g00948	complement(join(1941736..1941873,1941952..1942084,1942115..1942192,1942223..1942414,1942445..1942525,1942581..1942638,1942678..1943100))	Theileria parva strain Muguga	3501708
TpMuguga_02g00949	mRNA	RPS8	NC_007345.1	1943462	1944383	D	TpMuguga_02g00949	join(1943462..1943851,1943969..1944121,1944153..1944383)	Theileria parva strain Muguga	3501709
TpMuguga_02g00950	mRNA	TpMuguga_02g00950	NC_007345.1	1944893	1946351	D	TpMuguga_02g00950	<1944893..1946351	Theileria parva strain Muguga	3501710
TpMuguga_02g00951	mRNA	ABCC4	NC_007345.1	1947034	1951794	R	TpMuguga_02g00951	complement(1947034..>1951794)	Theileria parva strain Muguga	3501711
TpMuguga_02g00952	mRNA	TpMuguga_02g00952	NC_007345.1	1953287	1954752	D	TpMuguga_02g00952	1953287..1954752	Theileria parva strain Muguga	3501712
TpMuguga_02g00953	mRNA	TpMuguga_02g00953	NC_007345.1	1955209	1956772	D	TpMuguga_02g00953	1955209..1956772	Theileria parva strain Muguga	3501713
TpMuguga_02g00954	mRNA	TpMuguga_02g00954	NC_007345.1	1956773	1958370	D	TpMuguga_02g00954	1956773..1958370	Theileria parva strain Muguga	3501700
TpMuguga_02g00955	mRNA	TpMuguga_02g00955	NC_007345.1	1958470	1960173	D	TpMuguga_02g00955	<1958470..1960173	Theileria parva strain Muguga	3501701
TpMuguga_02g00956	mRNA	TpMuguga_02g00956	NC_007345.1	1960357	1962119	D	TpMuguga_02g00956	1960357..1962119	Theileria parva strain Muguga	3501702
TpMuguga_02g00957	mRNA	TpMuguga_02g00957	NC_007345.1	1963011	1963232	D	TpMuguga_02g00957	<1963011..>1963232	Theileria parva strain Muguga	3501703
TpMuguga_02g00958	mRNA	TpMuguga_02g00958	NC_007345.1	1963848	1965944	D	TpMuguga_02g00958	1963848..1965944	Theileria parva strain Muguga	3501704
TpMuguga_02g00959	mRNA	TpMuguga_02g00959	NC_007345.1	1966156	1967213	D	TpMuguga_02g00959	1966156..>1967213	Theileria parva strain Muguga	3501705
TpMuguga_02g00960	mRNA	TpMuguga_02g00960	NC_007345.1	1967639	1969393	D	TpMuguga_02g00960	1967639..1969393	Theileria parva strain Muguga	3501706
TpMuguga_02g02420	mRNA	TpMuguga_02g02420	NC_007345.1	1969988	1970553	D	TpMuguga_02g02420	1969988..1970553	Theileria parva strain Muguga	86047719
TpMuguga_03g00001	mRNA	TpMuguga_03g00001	NW_876245.1	2862	4451	R	TpMuguga_03g00001	complement(<2862..>4451)	Theileria parva strain Muguga	3499973
TpMuguga_03g00002	mRNA	TpMuguga_03g00002	NW_876245.1	4998	6473	R	TpMuguga_03g00002	complement(<4998..>6473)	Theileria parva strain Muguga	3499974
TpMuguga_03g00003	mRNA	TpMuguga_03g00003	NW_876245.1	7036	8511	R	TpMuguga_03g00003	complement(<7036..>8511)	Theileria parva strain Muguga	3499975
TpMuguga_03g02670	mRNA	TpMuguga_03g02670	NW_876245.1	9047	10286	R	TpMuguga_03g02670	complement(9047..10286)	Theileria parva strain Muguga	3499976
TpMuguga_03g02430	mRNA	TpMuguga_03g02430	NW_876245.1	10394	11628	R	TpMuguga_03g02430	complement(10394..11628)	Theileria parva strain Muguga	86047779
TpMuguga_03g00893	mRNA	TpMuguga_03g00893	NW_876245.1	11804	13510	R	TpMuguga_03g00893	complement(<11804..>13510)	Theileria parva strain Muguga	3499987
TpMuguga_03g00005	mRNA	TpMuguga_03g00005	NW_876245.1	13695	15242	R	TpMuguga_03g00005	complement(13695..>15242)	Theileria parva strain Muguga	3499988
TpMuguga_03g00006	mRNA	TpMuguga_03g00006	NW_876245.1	15412	16619	R	TpMuguga_03g00006	complement(15412..16619)	Theileria parva strain Muguga	86047739
TpMuguga_03g00007	mRNA	ABCC4	NW_876245.1	17006	22031	D	TpMuguga_03g00007	17006..22031	Theileria parva strain Muguga	3499990
TpMuguga_03g02610	mRNA	TpMuguga_03g02610	NW_876245.1	22363	25523	R	TpMuguga_03g02610	complement(22363..25523)	Theileria parva strain Muguga	3499991
TpMuguga_03g00009	mRNA	TpMuguga_03g00009	NW_876245.1	25950	26918	R	TpMuguga_03g00009	complement(25950..26918)	Theileria parva strain Muguga	3499992
TpMuguga_03g00010	mRNA	ZBTB8OS	NW_876245.1	27243	28094	R	TpMuguga_03g00010	complement(<27243..>28094)	Theileria parva strain Muguga	3499993
TpMuguga_03g00012	mRNA	rplO	NW_876245.1	28511	30458	R	TpMuguga_03g00012	complement(join(<28511..28723,28816..28884,28914..29125,29156..29336,29367..29476,29583..29773,29806..29870,29901..30046,30158..>30458))	Theileria parva strain Muguga	3499994
TpMuguga_03g00011	mRNA	TpMuguga_03g00011	NW_876245.1	30325	31005	D	TpMuguga_03g00011	join(<30325..30389,30582..>31005)	Theileria parva strain Muguga	3499962
TpMuguga_03g00013	mRNA	Lace1	NW_876245.1	31086	33174	R	TpMuguga_03g00013	complement(join(31086..31214,31331..31474,31503..31606,31652..31721,31972..32513,32629..>33174))	Theileria parva strain Muguga	3499963
TpMuguga_03g02250	mRNA	TpMuguga_03g02250	NW_876245.1	33211	33749	R	TpMuguga_03g02250	complement(join(<33211..33576,33633..>33749))	Theileria parva strain Muguga	86047765
TpMuguga_03g00014	mRNA	TpMuguga_03g00014	NW_876245.1	34156	35751	R	TpMuguga_03g00014	complement(join(<34156..34261,34338..34561,34734..35121,35186..35262,35412..35471,35503..>35751))	Theileria parva strain Muguga	3499964
TpMuguga_03g00015	mRNA	TpMuguga_03g00015	NW_876245.1	36126	38042	R	TpMuguga_03g00015	complement(join(<36126..36426,36455..36573,36668..36772,37033..37197,37380..>38042))	Theileria parva strain Muguga	3499965
TpMuguga_03g02460	mRNA	NRPB12	NW_876245.1	37990	38976	D	TpMuguga_03g02460	join(37990..38173,38303..38395,38954..>38976)	Theileria parva strain Muguga	3499966
TpMuguga_03g02465	mRNA	TpMuguga_03g02465	NW_876245.1	38976	40318	D	TpMuguga_03g02465	join(<38976..39012,39042..39223,39253..39339,39369..39562,39592..39902,40122..>40318)	Theileria parva strain Muguga	3499877
TpMuguga_03g00018	mRNA	TpMuguga_03g00018	NW_876245.1	40425	40886	D	TpMuguga_03g00018	join(<40425..40556,40589..40621,40722..>40886)	Theileria parva strain Muguga	3499878
TpMuguga_03g00019	mRNA	TpMuguga_03g00019	NW_876245.1	40982	42362	R	TpMuguga_03g00019	complement(40982..42362)	Theileria parva strain Muguga	3499879
TpMuguga_03g00020	mRNA	Wbscr22	NW_876245.1	42336	44071	D	TpMuguga_03g00020	join(42336..42702,42737..42841,42884..42995,43267..43441,43498..43653,43685..43871,43988..44071)	Theileria parva strain Muguga	3499880
TpMuguga_03g00021	mRNA	TpMuguga_03g00021	NW_876245.1	44363	46546	R	TpMuguga_03g00021	complement(<44363..>46546)	Theileria parva strain Muguga	3499881
TpMuguga_03g02475	mRNA	TpMuguga_03g02475	NW_876245.1	46829	48219	R	TpMuguga_03g02475	complement(join(<46829..46882,46913..46978,47015..47061,47092..47174,47205..47272,47335..47407,47438..47474,47532..47623,47749..47798,47863..47919,47949..47980,48015..48219))	Theileria parva strain Muguga	3499882
TpMuguga_03g02435	mRNA	TpMuguga_03g02435	NW_876245.1	48340	49387	R	TpMuguga_03g02435	complement(join(<48340..49149,49217..>49387))	Theileria parva strain Muguga	86047780
TpMuguga_03g00023	mRNA	TpMuguga_03g00023	NW_876245.1	49659	50964	D	TpMuguga_03g00023	49659..50964	Theileria parva strain Muguga	3499883
TpMuguga_03g00024	mRNA	Dnajc8	NW_876245.1	50780	52983	R	TpMuguga_03g00024	complement(join(50780..51068,51299..51400,51478..51623,51677..51802,52261..52321,52419..52570,52600..52983))	Theileria parva strain Muguga	3499884
TpMuguga_03g00025	mRNA	spm2	NW_876245.1	52991	54391	R	TpMuguga_03g00025	complement(join(<52991..53134,53351..53500,54062..54208,54247..54391))	Theileria parva strain Muguga	3499885
TpMuguga_03g00026	mRNA	CTDSPL	NW_876245.1	54463	55595	R	TpMuguga_03g00026	complement(join(<54463..54939,55277..55357,55389..>55595))	Theileria parva strain Muguga	3499886
TpMuguga_03g00027	mRNA	POLR2J	NW_876245.1	56099	56716	D	TpMuguga_03g00027	join(<56099..56172,56234..56323,56415..56586,56693..>56716)	Theileria parva strain Muguga	3499887
TpMuguga_03g02355	mRNA	TpMuguga_03g02355	NW_876245.1	56922	61212	D	TpMuguga_03g02355	join(<56922..56962,57069..58658,58883..58965,59137..59196,59226..59732,60140..60181,60211..60329,60393..60866,61035..61126,61155..>61212)	Theileria parva strain Muguga	3499889
TpMuguga_03g00030	mRNA	TpMuguga_03g00030	NW_876245.1	61267	62673	R	TpMuguga_03g00030	complement(join(<61267..62480,62592..>62673))	Theileria parva strain Muguga	3500001
TpMuguga_03g00031	mRNA	TpMuguga_03g00031	NW_876245.1	63603	64376	D	TpMuguga_03g00031	<63603..>64376	Theileria parva strain Muguga	3500002
TpMuguga_03g00032	mRNA	TpMuguga_03g00032	NW_876245.1	64573	65896	D	TpMuguga_03g00032	64573..65896	Theileria parva strain Muguga	3500003
TpMuguga_03g00033	mRNA	vha-15	NW_876245.1	65906	68465	R	TpMuguga_03g00033	complement(join(<65906..66078,66193..66318,66379..66443,66595..66695,66725..66811,67032..67237,67511..67639,67825..67953,68192..>68465))	Theileria parva strain Muguga	3500004
TpMuguga_03g02325	mRNA	TpMuguga_03g02325	NW_876245.1	68735	71013	R	TpMuguga_03g02325	complement(join(<68735..69102,69223..69285,69318..69378,69559..69708,69783..70037,70711..70834,70866..70910,70946..>71013))	Theileria parva strain Muguga	3500005
TpMuguga_03g00036	mRNA	U1A	NW_876245.1	71154	73103	D	TpMuguga_03g00036	join(<71154..71277,71329..71550,71898..72364,72579..72750,73048..>73103)	Theileria parva strain Muguga	3499955
TpMuguga_03g00037	mRNA	exosc3	NW_876245.1	73163	74086	R	TpMuguga_03g00037	complement(join(<73163..73277,73325..73393,73424..73583,73645..73735,73981..74046,74075..>74086))	Theileria parva strain Muguga	3499956
TpMuguga_03g00038	mRNA	TpMuguga_03g00038	NW_876245.1	74225	75355	R	TpMuguga_03g00038	complement(<74225..>75355)	Theileria parva strain Muguga	3499957
TpMuguga_03g00039	mRNA	TpMuguga_03g00039	NW_876245.1	76507	77112	R	TpMuguga_03g00039	complement(<76507..>77112)	Theileria parva strain Muguga	3499958
TpMuguga_03g00040	mRNA	TpMuguga_03g00040	NW_876245.1	77252	78565	R	TpMuguga_03g00040	complement(<77252..>78565)	Theileria parva strain Muguga	3499959
TpMuguga_03g00041	mRNA	TpMuguga_03g00041	NW_876245.1	79310	82227	D	TpMuguga_03g00041	join(79310..79596,79642..79710,80404..80591,80804..80993,81260..81741,81935..82227)	Theileria parva strain Muguga	3499960
TpMuguga_03g00042	mRNA	TpMuguga_03g00042	NW_876245.1	82271	82633	R	TpMuguga_03g00042	complement(<82271..>82633)	Theileria parva strain Muguga	3499961
TpMuguga_03g00043	mRNA	TpMuguga_03g00043	NW_876245.1	82680	83293	R	TpMuguga_03g00043	complement(join(<82680..82746,82972..83128,83182..>83293))	Theileria parva strain Muguga	3499890
TpMuguga_03g00044	mRNA	TpMuguga_03g00044	NW_876245.1	83323	84738	R	TpMuguga_03g00044	complement(83323..84738)	Theileria parva strain Muguga	86047740
TpMuguga_03g00045	mRNA	TpMuguga_03g00045	NW_876245.1	84954	86785	D	TpMuguga_03g00045	join(84954..85033,85189..86785)	Theileria parva strain Muguga	3499892
TpMuguga_03g00046	mRNA	TpMuguga_03g00046	NW_876245.1	86821	88296	D	TpMuguga_03g00046	join(86821..87276,87389..87721,88024..88072,88103..88296)	Theileria parva strain Muguga	3499893
TpMuguga_03g00047	mRNA	Gsk3a	NW_876245.1	88322	90276	R	TpMuguga_03g00047	complement(join(<88322..88794,88991..89600,89781..90276))	Theileria parva strain Muguga	3499894
TpMuguga_03g00048	mRNA	pyrABCN	NW_876245.1	90983	97536	D	TpMuguga_03g00048	join(<90983..91022,91255..91499,91662..92619,92698..93015,93153..93413,93508..93681,93813..93928,93981..94497,94625..95347,95480..95758,95880..96129,96257..96794,96896..97536)	Theileria parva strain Muguga	3499895
TpMuguga_03g00049	mRNA	DCP2	NW_876245.1	97656	99026	D	TpMuguga_03g00049	97656..>99026	Theileria parva strain Muguga	3500007
TpMuguga_03g00050	mRNA	RPL24	NW_876245.1	99430	100164	D	TpMuguga_03g00050	join(<99430..99609,99753..99905,100030..>100164)	Theileria parva strain Muguga	3500008
TpMuguga_03g00051	mRNA	TpMuguga_03g00051	NW_876245.1	100303	101182	R	TpMuguga_03g00051	complement(join(<100303..100793,100870..101182))	Theileria parva strain Muguga	3500009
TpMuguga_03g00052	mRNA	crp-6	NW_876245.1	101310	102205	R	TpMuguga_03g00052	complement(join(101310..101426,101558..102205))	Theileria parva strain Muguga	3500010
TpMuguga_03g00053	mRNA	TpMuguga_03g00053	NW_876245.1	102424	103120	R	TpMuguga_03g00053	complement(join(102424..102481,102514..102552,102583..102648,102720..102781,102812..102876,102907..102935,103073..>103120))	Theileria parva strain Muguga	3500011
TpMuguga_03g00054	mRNA	TpMuguga_03g00054	NW_876245.1	103248	104830	R	TpMuguga_03g00054	complement(join(<103248..103699,103777..>104830))	Theileria parva strain Muguga	3500012
TpMuguga_03g00055	mRNA	TpMuguga_03g00055	NW_876245.1	104856	106821	R	TpMuguga_03g00055	complement(join(104856..105293,105344..106113,106178..106279,106347..106821))	Theileria parva strain Muguga	3500013
TpMuguga_03g00056	mRNA	ctse-b	NW_876245.1	107100	109522	R	TpMuguga_03g00056	complement(join(107100..107224,107298..107771,107825..107910,107943..107995,108064..108220,108253..108292,108359..108483,108907..108959,108995..>109522))	Theileria parva strain Muguga	3500391
TpMuguga_03g00057	mRNA	ispD	NW_876245.1	109973	111316	D	TpMuguga_03g00057	109973..>111316	Theileria parva strain Muguga	3500392
TpMuguga_03g00058	mRNA	CETN1	NW_876245.1	111394	112859	D	TpMuguga_03g00058	join(111394..111860,112013..112080,112119..112205,112309..112389,112461..112520,112699..112859)	Theileria parva strain Muguga	3500393
TpMuguga_03g00059	mRNA	TpMuguga_03g00059	NW_876245.1	112989	116731	D	TpMuguga_03g00059	112989..116731	Theileria parva strain Muguga	3500394
TpMuguga_03g00060	mRNA	TpMuguga_03g00060	NW_876245.1	117009	117590	D	TpMuguga_03g00060	117009..117590	Theileria parva strain Muguga	3500395
TpMuguga_03g02520	mRNA	bms1	NW_876245.1	117750	120974	D	TpMuguga_03g02520	join(117750..118287,118320..118787,118853..119728,119759..119866,119912..119991,120086..120195,120226..120654,120686..120974)	Theileria parva strain Muguga	3499977
TpMuguga_03g00063	mRNA	STP2	NW_876245.1	121026	122727	R	TpMuguga_03g00063	complement(121026..122727)	Theileria parva strain Muguga	3499978
TpMuguga_03g00064	mRNA	STP2	NW_876245.1	122949	125433	R	TpMuguga_03g00064	complement(122949..125433)	Theileria parva strain Muguga	3499979
TpMuguga_03g02215	mRNA	TpMuguga_03g02215	NW_876245.1	128967	130697	D	TpMuguga_03g02215	join(128967..129631,129664..129747,129781..130697)	Theileria parva strain Muguga	86047761
TpMuguga_03g00065	mRNA	cysS	NW_876245.1	130669	133101	R	TpMuguga_03g00065	complement(join(130669..130750,130780..130932,130962..131025,131054..131217,131258..131365,131400..131558,131600..131783,131813..132098,132128..132447,132479..132552,132587..132778,132822..133101))	Theileria parva strain Muguga	3499980
TpMuguga_03g02285	mRNA	TpMuguga_03g02285	NW_876245.1	132808	135290	D	TpMuguga_03g02285	join(132808..133271,133399..133616,133647..133878,133909..134046,134077..134246,134283..134432,134464..134925,134986..135290)	Theileria parva strain Muguga	3499981
TpMuguga_03g02675	mRNA	TpMuguga_03g02675	NW_876245.1	135291	135935	D	TpMuguga_03g02675	join(135291..135391,135430..135471,135503..135558,135591..135666,135699..135769,135804..135866,135906..>135935)	Theileria parva strain Muguga	86047791
TpMuguga_03g00067	mRNA	TpMuguga_03g00067	NW_876245.1	136120	136672	D	TpMuguga_03g00067	join(<136120..136185,136278..136440,136484..136672)	Theileria parva strain Muguga	3500014
TpMuguga_03g00068	mRNA	TpMuguga_03g00068	NW_876245.1	136775	137215	D	TpMuguga_03g00068	join(136775..136874,136912..136985,137019..137082,137123..137166,137200..>137215)	Theileria parva strain Muguga	3500015
TpMuguga_03g00069	mRNA	Cnot3	NW_876245.1	137262	137971	D	TpMuguga_03g00069	join(<137262..137304,137359..137397,137433..137629,137700..137853,137916..>137971)	Theileria parva strain Muguga	3500016
TpMuguga_03g00070	mRNA	TpMuguga_03g00070	NW_876245.1	138052	139030	D	TpMuguga_03g00070	138052..139030	Theileria parva strain Muguga	3500017
TpMuguga_03g00071	mRNA	TpMuguga_03g00071	NW_876245.1	139043	141425	D	TpMuguga_03g00071	join(<139043..139224,139260..139338,139369..139486,139553..139738,139800..139960,140039..140165,140233..140336,140382..140488,140615..140902,141062..141155,141186..141257,141290..141425)	Theileria parva strain Muguga	3500018
TpMuguga_03g00072	mRNA	TpMuguga_03g00072	NW_876245.1	141412	142248	R	TpMuguga_03g00072	complement(141412..142248)	Theileria parva strain Muguga	3500019
TpMuguga_03g00073	mRNA	TpMuguga_03g00073	NW_876245.1	142509	143303	D	TpMuguga_03g00073	142509..143303	Theileria parva strain Muguga	3500403
TpMuguga_03g00074	mRNA	TpMuguga_03g00074	NW_876245.1	143375	144625	R	TpMuguga_03g00074	complement(join(143375..143434,143464..143545,143629..144169,144287..144625))	Theileria parva strain Muguga	3500404
TpMuguga_03g00075	mRNA	TpMuguga_03g00075	NW_876245.1	144632	145572	D	TpMuguga_03g00075	join(144632..144850,144950..145066,145106..145150,145184..145247,145312..145490,145522..>145572)	Theileria parva strain Muguga	3500405
TpMuguga_03g00076	mRNA	TpMuguga_03g00076	NW_876245.1	145591	146317	R	TpMuguga_03g00076	complement(join(145591..146112,146148..146317))	Theileria parva strain Muguga	3500406
TpMuguga_03g00077	mRNA	TpMuguga_03g00077	NW_876245.1	146294	148284	R	TpMuguga_03g00077	complement(join(146294..146510,146629..147522,147644..147930,148012..148284))	Theileria parva strain Muguga	3500407
TpMuguga_03g00078	mRNA	fumB	NW_876245.1	148288	151393	R	TpMuguga_03g00078	complement(join(148288..148818,148945..149139,149330..149404,149436..149495,149602..149704,149817..149950,150091..150190,150396..150561,150649..150780,150828..151393))	Theileria parva strain Muguga	3500408
TpMuguga_03g00079	mRNA	TpMuguga_03g00079	NW_876245.1	151964	154578	D	TpMuguga_03g00079	join(<151964..152066,152181..152369,152511..152789,152867..>154578)	Theileria parva strain Muguga	3500020
TpMuguga_03g00080	mRNA	TpMuguga_03g00080	NW_876245.1	154736	155431	R	TpMuguga_03g00080	complement(<154736..>155431)	Theileria parva strain Muguga	3500021
TpMuguga_03g00081	mRNA	TpMuguga_03g00081	NW_876245.1	155755	156516	R	TpMuguga_03g00081	complement(155755..156516)	Theileria parva strain Muguga	3500022
TpMuguga_03g00082	mRNA	TpMuguga_03g00082	NW_876245.1	156635	159936	R	TpMuguga_03g00082	complement(join(156635..156874,157015..157155,157205..157310,157382..157482,157692..159936))	Theileria parva strain Muguga	3500023
TpMuguga_03g00083	mRNA	TpMuguga_03g00083	NW_876245.1	159921	161058	R	TpMuguga_03g00083	complement(159921..161058)	Theileria parva strain Muguga	3500024
TpMuguga_03g00084	mRNA	gcs-1	NW_876245.1	161052	164192	D	TpMuguga_03g00084	join(161052..162111,162179..163696,163868..164192)	Theileria parva strain Muguga	3500025
TpMuguga_03g00085	mRNA	TpMuguga_03g00085	NW_876245.1	164203	165532	D	TpMuguga_03g00085	join(164203..164839,165069..165532)	Theileria parva strain Muguga	3500026
TpMuguga_03g00086	mRNA	TpMuguga_03g00086	NW_876245.1	165798	167778	R	TpMuguga_03g00086	complement(165798..167778)	Theileria parva strain Muguga	3500027
TpMuguga_03g00087	mRNA	FLAD1	NW_876245.1	168131	169462	R	TpMuguga_03g00087	complement(join(168131..168252,168397..168651,168903..169002,169033..169148,169181..169462))	Theileria parva strain Muguga	3500028
TpMuguga_03g00088	mRNA	pab2	NW_876245.1	169480	170682	D	TpMuguga_03g00088	join(169480..169635,169733..169819,170014..170120,170171..170258,170330..170418,170585..170682)	Theileria parva strain Muguga	3500029
TpMuguga_03g00089	mRNA	TpMuguga_03g00089	NW_876245.1	170810	172725	D	TpMuguga_03g00089	170810..172725	Theileria parva strain Muguga	3500030
TpMuguga_03g00090	mRNA	TpMuguga_03g00090	NW_876245.1	172818	174350	D	TpMuguga_03g00090	join(172818..173209,173500..>174350)	Theileria parva strain Muguga	3500031
TpMuguga_03g00092	mRNA	redB	NW_876245.1	174308	178319	R	TpMuguga_03g00092	complement(join(174308..174453,174483..174571,174772..174944,175205..175466,175812..176087,176330..176424,176453..176492,176568..176639,176669..176826,176872..177017,177271..177419,177449..177556,177819..177973,178071..178319))	Theileria parva strain Muguga	3500032
TpMuguga_03g00093	mRNA	TpMuguga_03g00093	NW_876245.1	178460	182700	R	TpMuguga_03g00093	complement(join(178460..179556,179907..180693,181008..182700))	Theileria parva strain Muguga	3500033
TpMuguga_03g02175	mRNA	TpMuguga_03g02175	NW_876245.1	182831	185995	D	TpMuguga_03g02175	join(182831..183225,183359..183496,183840..183912,184012..184074,184106..184140,184236..184282,184311..184386,184415..184466,184499..184569,184927..185031,185062..185375,185680..185995)	Theileria parva strain Muguga	3500034
TpMuguga_03g02315	mRNA	TpMuguga_03g02315	NW_876245.1	186025	188595	D	TpMuguga_03g02315	join(186025..186343,186448..186674,187039..187838,188202..188595)	Theileria parva strain Muguga	3500037
TpMuguga_03g00098	mRNA	TpMuguga_03g00098	NW_876245.1	188572	189377	D	TpMuguga_03g00098	join(188572..188748,188850..189377)	Theileria parva strain Muguga	3500038
TpMuguga_03g00099	mRNA	TpMuguga_03g00099	NW_876245.1	189944	190651	R	TpMuguga_03g00099	complement(<189944..>190651)	Theileria parva strain Muguga	3500039
TpMuguga_03g00100	mRNA	DJ1B	NW_876245.1	191252	192335	R	TpMuguga_03g00100	complement(join(191252..191399,191545..191755,191941..192144,192209..192335))	Theileria parva strain Muguga	3500040
TpMuguga_03g00101	mRNA	TpMuguga_03g00101	NW_876245.1	192397	193978	R	TpMuguga_03g00101	complement(join(192397..192571,192871..193152,193500..193564,193595..193651,193681..193753,193829..193978))	Theileria parva strain Muguga	3500041
TpMuguga_03g00102	mRNA	TpMuguga_03g00102	NW_876245.1	194318	197766	D	TpMuguga_03g00102	join(194318..195288,195375..195651,195979..197766)	Theileria parva strain Muguga	3500042
TpMuguga_03g00103	mRNA	TpMuguga_03g00103	NW_876245.1	198019	198612	R	TpMuguga_03g00103	complement(<198019..>198612)	Theileria parva strain Muguga	3500043
TpMuguga_03g00104	mRNA	TpMuguga_03g00104	NW_876245.1	198870	199618	R	TpMuguga_03g00104	complement(198870..>199618)	Theileria parva strain Muguga	3500044
TpMuguga_03g00105	mRNA	TpMuguga_03g00105	NW_876245.1	199950	201118	R	TpMuguga_03g00105	complement(join(199950..200205,200523..201118))	Theileria parva strain Muguga	3500045
TpMuguga_03g00106	mRNA	RPL18	NW_876245.1	201123	202457	D	TpMuguga_03g00106	join(201123..201837,201991..202111,202366..202457)	Theileria parva strain Muguga	3500046
TpMuguga_03g00107	mRNA	TpMuguga_03g00107	NW_876245.1	202622	205715	D	TpMuguga_03g00107	join(<202622..204152,204404..205385,205481..205715)	Theileria parva strain Muguga	3500047
TpMuguga_03g00108	mRNA	sec1	NW_876245.1	206804	209426	R	TpMuguga_03g00108	complement(join(206804..208807,209142..209426))	Theileria parva strain Muguga	3500048
TpMuguga_03g00109	mRNA	TpMuguga_03g00109	NW_876245.1	209620	212985	R	TpMuguga_03g00109	complement(join(209620..212409,212575..212985))	Theileria parva strain Muguga	3500049
TpMuguga_03g00110	mRNA	trxr2	NW_876245.1	212895	216426	D	TpMuguga_03g00110	join(212895..213559,213615..213752,214091..214221,214313..214379,214612..214758,214977..215058,215116..215300,215367..215447,215856..215952,216108..216426)	Theileria parva strain Muguga	3500050
TpMuguga_03g00111	mRNA	TpMuguga_03g00111	NW_876245.1	216403	219609	D	TpMuguga_03g00111	join(216403..217078,217632..219094,219354..219446,219477..219609)	Theileria parva strain Muguga	3500051
TpMuguga_03g00112	mRNA	TpMuguga_03g00112	NW_876245.1	219618	221892	R	TpMuguga_03g00112	complement(join(219618..220048,220079..220166,220265..220672,220991..221324,221435..221691,221723..221892))	Theileria parva strain Muguga	3500052
TpMuguga_03g00113	mRNA	TpMuguga_03g00113	NW_876245.1	222017	222792	R	TpMuguga_03g00113	complement(222017..222792)	Theileria parva strain Muguga	3500053
TpMuguga_03g00114	mRNA	TpMuguga_03g00114	NW_876245.1	222958	228334	R	TpMuguga_03g00114	complement(join(222958..228201,228285..>228334))	Theileria parva strain Muguga	3500054
TpMuguga_03g00115	mRNA	TpMuguga_03g00115	NW_876245.1	228683	229335	D	TpMuguga_03g00115	join(228683..229100,229130..229244,229273..>229335)	Theileria parva strain Muguga	3500056
TpMuguga_03g02495	mRNA	ARL2	NW_876245.1	229166	230286	R	TpMuguga_03g02495	complement(join(229166..229520,229551..229631,229707..229869,229900..230010,230197..230286))	Theileria parva strain Muguga	3500058
TpMuguga_03g00118	mRNA	TpMuguga_03g00118	NW_876245.1	230560	232716	R	TpMuguga_03g00118	complement(join(<230560..232511,232593..>232716))	Theileria parva strain Muguga	3500059
TpMuguga_03g02565	mRNA	TpMuguga_03g02565	NW_876245.1	232710	236162	D	TpMuguga_03g02565	join(232710..233193,233226..233270,233445..233711,233742..236162)	Theileria parva strain Muguga	3500060
TpMuguga_03g00121	mRNA	TpMuguga_03g00121	NW_876245.1	236290	236919	R	TpMuguga_03g00121	complement(236290..236919)	Theileria parva strain Muguga	3500062
TpMuguga_03g02445	mRNA	TpMuguga_03g02445	NW_876245.1	236958	237317	R	TpMuguga_03g02445	complement(<236958..>237317)	Theileria parva strain Muguga	86047782
TpMuguga_03g00122	mRNA	TpMuguga_03g00122	NW_876245.1	237432	239219	R	TpMuguga_03g00122	complement(<237432..>239219)	Theileria parva strain Muguga	3500063
TpMuguga_03g00123	mRNA	TpMuguga_03g00123	NW_876245.1	239305	241162	D	TpMuguga_03g00123	join(<239305..240324,240434..240553,240586..240797,240871..240945,240976..241162)	Theileria parva strain Muguga	3500064
TpMuguga_03g00124	mRNA	ogdh	NW_876245.1	241186	245006	R	TpMuguga_03g00124	complement(join(241186..242049,242270..242522,242553..243348,243441..243508,243539..243845,243917..244115,244168..244454,244484..244626,244661..244736,244797..>245006))	Theileria parva strain Muguga	3500065
TpMuguga_03g00125	mRNA	TpMuguga_03g00125	NW_876245.1	245105	246390	R	TpMuguga_03g00125	complement(join(245105..245486,245518..246390))	Theileria parva strain Muguga	3500066
TpMuguga_03g00126	mRNA	TpMuguga_03g00126	NW_876245.1	246293	247453	D	TpMuguga_03g00126	246293..247453	Theileria parva strain Muguga	3500067
TpMuguga_03g00127	mRNA	TpMuguga_03g00127	NW_876245.1	247818	248342	D	TpMuguga_03g00127	<247818..>248342	Theileria parva strain Muguga	3500068
TpMuguga_03g00128	mRNA	Smarca2	NW_876245.1	248293	252611	R	TpMuguga_03g00128	complement(join(248293..249019,249181..249816,249871..250015,250147..250274,250389..250599,250646..250755,250820..251046,251157..251272,251340..252611))	Theileria parva strain Muguga	3500069
TpMuguga_03g00129	mRNA	TpMuguga_03g00129	NW_876245.1	252967	254277	R	TpMuguga_03g00129	complement(join(252967..253145,253178..253556,253656..253970,254099..254277))	Theileria parva strain Muguga	3500070
TpMuguga_03g00130	mRNA	TpMuguga_03g00130	NW_876245.1	255106	255615	R	TpMuguga_03g00130	complement(join(<255106..255154,255232..255321,255361..255497,255529..>255615))	Theileria parva strain Muguga	3500072
TpMuguga_03g00131	mRNA	engB	NW_876245.1	255730	257202	D	TpMuguga_03g00131	join(<255730..255832,255921..256075,256108..256221,256269..256429,256462..257202)	Theileria parva strain Muguga	3500073
TpMuguga_03g02440	mRNA	TpMuguga_03g02440	NW_876245.1	257241	257462	R	TpMuguga_03g02440	complement(<257241..>257462)	Theileria parva strain Muguga	86047781
TpMuguga_03g00132	mRNA	TpMuguga_03g00132	NW_876245.1	257487	258260	D	TpMuguga_03g00132	join(257487..257647,257774..257986,258028..258074,258120..>258260)	Theileria parva strain Muguga	3500074
TpMuguga_03g00134	mRNA	TpMuguga_03g00134	NW_876245.1	259074	259649	D	TpMuguga_03g00134	<259074..>259649	Theileria parva strain Muguga	3500077
TpMuguga_03g00135	mRNA	TpMuguga_03g00135	NW_876245.1	259974	260546	D	TpMuguga_03g00135	<259974..>260546	Theileria parva strain Muguga	3500078
TpMuguga_03g00136	mRNA	TpMuguga_03g00136	NW_876245.1	260751	261721	D	TpMuguga_03g00136	260751..261721	Theileria parva strain Muguga	3500079
TpMuguga_03g00137	mRNA	metG	NW_876245.1	261860	264791	D	TpMuguga_03g00137	join(261860..262195,262242..262593,262659..264791)	Theileria parva strain Muguga	3500080
TpMuguga_03g02415	mRNA	TpMuguga_03g02415	NW_876245.1	265322	267390	D	TpMuguga_03g02415	join(265322..265510,265606..265804,265926..266002,266035..266464,266495..266538,266570..266890,266985..267129,267246..267390)	Theileria parva strain Muguga	3500081
TpMuguga_03g00140	mRNA	CDKC-2	NW_876245.1	267465	269508	D	TpMuguga_03g00140	267465..269508	Theileria parva strain Muguga	3500083
TpMuguga_03g00141	mRNA	TpMuguga_03g00141	NW_876245.1	269509	271266	D	TpMuguga_03g00141	join(269509..269787,269818..269871,270000..270185,270271..270370,270443..270516,270603..270657,270724..270849,270883..271019,271085..271165,271206..271266)	Theileria parva strain Muguga	3500084
TpMuguga_03g00142	mRNA	TpMuguga_03g00142	NW_876245.1	271347	272754	R	TpMuguga_03g00142	complement(join(271347..271486,271521..271617,271649..271873,271923..272175,272230..272363,272449..272556,272586..272754))	Theileria parva strain Muguga	3500397
TpMuguga_03g00143	mRNA	TpMuguga_03g00143	NW_876245.1	272834	275172	D	TpMuguga_03g00143	join(272834..273033,273118..275172)	Theileria parva strain Muguga	3500398
TpMuguga_03g00144	mRNA	AQR	NW_876245.1	275321	280732	D	TpMuguga_03g00144	join(<275321..275744,275827..280732)	Theileria parva strain Muguga	3500399
TpMuguga_03g00145	mRNA	TpMuguga_03g00145	NW_876245.1	280993	282177	D	TpMuguga_03g00145	join(280993..281143,281176..281248,281278..281352,281384..281473,281505..281589,281620..281789,281823..282177)	Theileria parva strain Muguga	3500400
TpMuguga_03g00146	mRNA	ALPHA-ADR	NW_876245.1	282197	285489	D	TpMuguga_03g00146	join(282197..283487,283559..283828,283890..283957,284021..285155,285242..285330,285361..285489)	Theileria parva strain Muguga	3500401
TpMuguga_03g00147	mRNA	TpMuguga_03g00147	NW_876245.1	285660	287339	D	TpMuguga_03g00147	285660..287339	Theileria parva strain Muguga	3500402
TpMuguga_03g00148	mRNA	TpMuguga_03g00148	NW_876245.1	287514	291916	D	TpMuguga_03g00148	<287514..291916	Theileria parva strain Muguga	3500085
TpMuguga_03g00149	mRNA	TpMuguga_03g00149	NW_876245.1	292257	294047	D	TpMuguga_03g00149	292257..294047	Theileria parva strain Muguga	3500086
TpMuguga_03g00150	mRNA	TpMuguga_03g00150	NW_876245.1	294137	295132	D	TpMuguga_03g00150	join(294137..294457,294539..294718,294770..294892,295005..295132)	Theileria parva strain Muguga	3500087
TpMuguga_03g00151	mRNA	TpMuguga_03g00151	NW_876245.1	295743	296189	D	TpMuguga_03g00151	<295743..>296189	Theileria parva strain Muguga	3500088
TpMuguga_03g00152	mRNA	HTR8	NW_876245.1	296667	297536	D	TpMuguga_03g00152	296667..297536	Theileria parva strain Muguga	3500089
TpMuguga_03g00153	mRNA	TpMuguga_03g00153	NW_876245.1	297710	300384	D	TpMuguga_03g00153	297710..300384	Theileria parva strain Muguga	3500090
TpMuguga_03g00154	mRNA	TpMuguga_03g00154	NW_876245.1	300508	301357	D	TpMuguga_03g00154	join(300508..300851,300881..301018,301090..301357)	Theileria parva strain Muguga	3500091
TpMuguga_03g00155	mRNA	TpMuguga_03g00155	NW_876245.1	301148	302196	R	TpMuguga_03g00155	complement(join(301148..301220,301262..301332,301406..301571,301637..301731,301765..301874,301923..301977,302031..302196))	Theileria parva strain Muguga	3500092
TpMuguga_03g02685	mRNA	GWT1	NW_876245.1	302118	304639	D	TpMuguga_03g02685	join(302118..302798,302861..303003,303098..303172,303204..303259,303338..303408,303442..303502,303543..303701,303732..303863,303917..304058,304097..304166,304218..304299,304379..304639)	Theileria parva strain Muguga	3500094
TpMuguga_03g00158	mRNA	TpMuguga_03g00158	NW_876245.1	304808	306678	R	TpMuguga_03g00158	complement(join(<304808..304936,304984..305184,305217..305358,305421..305540,305576..305604,305703..306678))	Theileria parva strain Muguga	3500095
TpMuguga_03g00159	mRNA	TpMuguga_03g00159	NW_876245.1	306796	308135	R	TpMuguga_03g00159	complement(306796..>308135)	Theileria parva strain Muguga	3500096
TpMuguga_03g00160	mRNA	TpMuguga_03g00160	NW_876245.1	308246	310040	R	TpMuguga_03g00160	complement(join(<308246..309375,309464..310040))	Theileria parva strain Muguga	3500097
TpMuguga_03g00161	mRNA	TpMuguga_03g00161	NW_876245.1	310581	312226	D	TpMuguga_03g00161	join(310581..312010,312065..312117,312148..312226)	Theileria parva strain Muguga	3500098
TpMuguga_03g00162	mRNA	nth-1	NW_876245.1	312067	314073	R	TpMuguga_03g00162	complement(join(312067..312410,312442..312566,312609..312968,313008..313525,313685..314073))	Theileria parva strain Muguga	3500099
TpMuguga_03g00163	mRNA	Rpl19	NW_876245.1	313825	314904	D	TpMuguga_03g00163	join(313825..314079,314327..314904)	Theileria parva strain Muguga	3500100
TpMuguga_03g00164	mRNA	TpMuguga_03g00164	NW_876245.1	314916	317164	R	TpMuguga_03g00164	complement(join(314916..315518,315562..317164))	Theileria parva strain Muguga	3500101
TpMuguga_03g02275	mRNA	TpMuguga_03g02275	NW_876245.1	317168	317791	R	TpMuguga_03g02275	complement(join(317168..317535,317604..317791))	Theileria parva strain Muguga	86047768
TpMuguga_03g00165	mRNA	Abcc5	NW_876245.1	317853	323860	D	TpMuguga_03g00165	join(317853..318726,318782..320212,320306..321325,321430..321755,321841..321944,322085..322553,322679..322994,323120..323768,323797..>323860)	Theileria parva strain Muguga	3500102
TpMuguga_03g00166	mRNA	TpMuguga_03g00166	NW_876245.1	324000	324635	D	TpMuguga_03g00166	join(<324000..324155,324186..324315,324428..324526,324586..>324635)	Theileria parva strain Muguga	3500103
TpMuguga_03g00167	mRNA	TpMuguga_03g00167	NW_876245.1	324746	325731	D	TpMuguga_03g00167	join(324746..324989,325084..325146,325177..325441,325607..325731)	Theileria parva strain Muguga	3500104
TpMuguga_03g00168	mRNA	TpMuguga_03g00168	NW_876245.1	325787	333498	D	TpMuguga_03g00168	join(325787..327580,327685..329583,329686..333498)	Theileria parva strain Muguga	3500105
TpMuguga_03g00169	mRNA	TpMuguga_03g00169	NW_876245.1	333519	334238	D	TpMuguga_03g00169	<333519..>334238	Theileria parva strain Muguga	3500106
TpMuguga_03g00170	mRNA	TpMuguga_03g00170	NW_876245.1	334377	341687	D	TpMuguga_03g00170	join(334377..334930,335018..335797,335868..335973,336035..>341687)	Theileria parva strain Muguga	3500107
TpMuguga_03g00171	mRNA	CPSF73-II	NW_876245.1	341916	345011	R	TpMuguga_03g00171	complement(join(341916..342003,342036..342109,342139..342394,342506..342613,342644..342733,342775..342887,342953..342994,343087..343441,343520..343686,343788..344173,344266..344404,344436..345011))	Theileria parva strain Muguga	3500108
TpMuguga_03g00172	mRNA	cmtr2	NW_876245.1	345048	349016	D	TpMuguga_03g00172	join(345048..345310,345386..345536,345611..345824,345918..346070,346102..346172,346206..346294,346382..346635,346669..347837,347936..348073,348140..348444,348589..348778,348863..349016)	Theileria parva strain Muguga	3500109
TpMuguga_03g02570	mRNA	TpMuguga_03g02570	NW_876245.1	349051	350529	R	TpMuguga_03g02570	complement(join(<349051..349153,349189..349270,349352..349485,349517..349585,349624..349716,349748..349806,349836..349941,350076..350198,350270..350529))	Theileria parva strain Muguga	3500110
TpMuguga_03g00175	mRNA	TpMuguga_03g00175	NW_876245.1	351034	352077	D	TpMuguga_03g00175	join(<351034..351745,351839..>352077)	Theileria parva strain Muguga	3500112
TpMuguga_03g00176	mRNA	SRV2	NW_876245.1	352450	353149	D	TpMuguga_03g00176	join(<352450..352495,352659..>353149)	Theileria parva strain Muguga	3500113
TpMuguga_03g02605	mRNA	TpMuguga_03g02605	NW_876245.1	353270	354376	R	TpMuguga_03g02605	complement(join(<353270..353338,353440..353479,353514..353661,353701..353935,353995..354376))	Theileria parva strain Muguga	3500114
TpMuguga_03g00179	mRNA	TpMuguga_03g00179	NW_876245.1	354376	356325	R	TpMuguga_03g00179	complement(join(<354376..354599,354742..354901,355004..355262,355375..355660,355759..355884,355994..356325))	Theileria parva strain Muguga	3500116
TpMuguga_03g00180	mRNA	invs	NW_876245.1	356423	359031	R	TpMuguga_03g00180	complement(356423..359031)	Theileria parva strain Muguga	3500117
TpMuguga_03g02595	mRNA	METTL18	NW_876245.1	359296	360454	R	TpMuguga_03g02595	complement(join(359296..360011,360094..360205,360272..>360454))	Theileria parva strain Muguga	86047787
TpMuguga_03g00181	mRNA	TpMuguga_03g00181	NW_876245.1	360690	363191	R	TpMuguga_03g00181	complement(<360690..363191)	Theileria parva strain Muguga	3500118
TpMuguga_03g00182	mRNA	TpMuguga_03g00182	NW_876245.1	363333	365095	R	TpMuguga_03g00182	complement(join(363333..363471,363506..363996,364062..365095))	Theileria parva strain Muguga	3500119
TpMuguga_03g00183	mRNA	CCT1	NW_876245.1	365214	367704	R	TpMuguga_03g00183	complement(join(365214..365448,365505..365648,365701..365897,365961..366095,366146..366321,366428..366846,366909..367031,367103..367293,367368..367704))	Theileria parva strain Muguga	3500120
TpMuguga_03g00184	mRNA	TpMuguga_03g00184	NW_876245.1	368216	370032	R	TpMuguga_03g00184	complement(join(<368216..368361,368394..368462,368492..368762,368865..369151,369257..370032))	Theileria parva strain Muguga	3500121
TpMuguga_03g00185	mRNA	polr2a	NW_876245.1	370050	375388	R	TpMuguga_03g00185	complement(370050..375388)	Theileria parva strain Muguga	3500122
TpMuguga_03g00186	mRNA	Stoml2	NW_876245.1	375466	377165	R	TpMuguga_03g00186	complement(join(375466..375631,375694..375852,375990..376182,376215..376316,376350..376484,376523..376576,376665..376800,376906..377165))	Theileria parva strain Muguga	3500123
TpMuguga_03g00187	mRNA	TpMuguga_03g00187	NW_876245.1	377166	378008	R	TpMuguga_03g00187	complement(join(377166..377297,377336..377360,377479..377601,377682..377738,377768..378008))	Theileria parva strain Muguga	3500124
TpMuguga_03g00188	mRNA	TpMuguga_03g00188	NW_876245.1	378137	379355	R	TpMuguga_03g00188	complement(<378137..379355)	Theileria parva strain Muguga	3500125
TpMuguga_03g02305	mRNA	TpMuguga_03g02305	NW_876245.1	379673	380082	D	TpMuguga_03g02305	379673..380082	Theileria parva strain Muguga	86047770
TpMuguga_03g02380	mRNA	TpMuguga_03g02380	NW_876245.1	380308	381230	D	TpMuguga_03g02380	join(<380308..380468,380502..380569,380659..380673,380707..380738,380797..380850,380891..380930,380996..381060,381183..381230)	Theileria parva strain Muguga	3500126
TpMuguga_03g00191	mRNA	rpl21	NW_876245.1	381235	382061	D	TpMuguga_03g00191	381235..382061	Theileria parva strain Muguga	3500128
TpMuguga_03g00192	mRNA	infB	NW_876245.1	382107	385541	R	TpMuguga_03g00192	complement(join(382107..382248,382341..382593,382803..382865,382959..383303,383423..384496,384594..>385541))	Theileria parva strain Muguga	3500129
TpMuguga_03g00193	mRNA	TpMuguga_03g00193	NW_876245.1	385925	386965	R	TpMuguga_03g00193	complement(<385925..>386965)	Theileria parva strain Muguga	3500130
TpMuguga_03g00194	mRNA	TpMuguga_03g00194	NW_876245.1	387132	388274	R	TpMuguga_03g00194	complement(387132..>388274)	Theileria parva strain Muguga	3500131
TpMuguga_03g00195	mRNA	RH29	NW_876245.1	389063	391850	D	TpMuguga_03g00195	join(389063..389839,389991..390039,390090..>391850)	Theileria parva strain Muguga	3500132
TpMuguga_03g00196	mRNA	TpMuguga_03g00196	NW_876245.1	392008	394336	R	TpMuguga_03g00196	complement(join(<392008..392594,392700..394336))	Theileria parva strain Muguga	3500133
TpMuguga_03g00197	mRNA	TpMuguga_03g00197	NW_876245.1	394447	396903	R	TpMuguga_03g00197	complement(join(<394447..396530,396849..>396903))	Theileria parva strain Muguga	3500134
TpMuguga_03g02545	mRNA	rpoA	NW_876245.1	397360	400321	D	TpMuguga_03g02545	join(397360..397856,397962..398059,398205..398252,398389..398758,398959..399526,399671..400321)	Theileria parva strain Muguga	3500136
TpMuguga_03g00200	mRNA	TpMuguga_03g00200	NW_876245.1	400150	403039	R	TpMuguga_03g00200	complement(join(400150..400333,400506..400658,400775..403039))	Theileria parva strain Muguga	3500137
TpMuguga_03g00201	mRNA	U2AF65A	NW_876245.1	403282	405171	R	TpMuguga_03g00201	complement(join(403282..403979,404049..404585,404715..405171))	Theileria parva strain Muguga	3500138
TpMuguga_03g00202	mRNA	TpMuguga_03g00202	NW_876245.1	405177	411569	R	TpMuguga_03g00202	complement(join(<405177..405623,405736..405815,405930..406080,406181..406249,406394..406904,407033..407154,407191..407274,407387..407646,407793..408185,408316..408404,408518..408588,408618..408824,408933..409136,409239..409439,409557..409772,409907..410400,410489..410600,410676..411067,411225..411324,411477..>411569))	Theileria parva strain Muguga	3500139
TpMuguga_03g00203	mRNA	FAS2	NW_876245.1	411688	414638	R	TpMuguga_03g00203	complement(join(411688..413201,413272..413359,413453..413659,413746..413848,413940..414638))	Theileria parva strain Muguga	3500140
TpMuguga_03g00204	mRNA	TpMuguga_03g00204	NW_876245.1	414709	416443	D	TpMuguga_03g00204	join(414709..414961,415054..415190,415222..415426,415545..415826,415974..416144,416176..416214,416303..>416443)	Theileria parva strain Muguga	3500141
TpMuguga_03g00205	mRNA	cid11	NW_876245.1	416525	418657	R	TpMuguga_03g00205	complement(join(416525..416923,416965..417015,417085..417338,417418..417492,417526..417607,417727..417900,418027..418132,418191..418657))	Theileria parva strain Muguga	3500142
TpMuguga_03g00206	mRNA	TpMuguga_03g00206	NW_876245.1	418745	421607	D	TpMuguga_03g00206	join(418745..419873,420017..420216,420312..420526,420637..420989,421088..421207,421322..421607)	Theileria parva strain Muguga	3500143
TpMuguga_03g00207	mRNA	TpMuguga_03g00207	NW_876245.1	421696	423239	R	TpMuguga_03g00207	complement(421696..423239)	Theileria parva strain Muguga	3500417
TpMuguga_03g00208	mRNA	TpMuguga_03g00208	NW_876245.1	423233	424553	R	TpMuguga_03g00208	complement(join(423233..423959,424035..424553))	Theileria parva strain Muguga	3500418
TpMuguga_03g00209	mRNA	TpMuguga_03g00209	NW_876245.1	424630	425865	D	TpMuguga_03g00209	join(424630..425090,425126..425492,425577..425865)	Theileria parva strain Muguga	3500419
TpMuguga_03g00210	mRNA	TpMuguga_03g00210	NW_876245.1	425917	428679	R	TpMuguga_03g00210	complement(join(425917..426151,426287..426775,426951..427064,427160..427289,427383..427719,427799..427940,428047..428226,428399..428679))	Theileria parva strain Muguga	3500420
TpMuguga_03g00211	mRNA	TpMuguga_03g00211	NW_876245.1	428685	429322	D	TpMuguga_03g00211	join(428685..428993,429106..429322)	Theileria parva strain Muguga	3500421
TpMuguga_03g00212	mRNA	sf3b1	NW_876245.1	429596	433726	D	TpMuguga_03g00212	join(429596..430012,430114..431142,431223..431483,431625..432356,432504..433031,433147..433451,433564..433726)	Theileria parva strain Muguga	3500422
TpMuguga_03g00213	mRNA	TpMuguga_03g00213	NW_876245.1	434410	437772	D	TpMuguga_03g00213	<434410..>437772	Theileria parva strain Muguga	3500144
TpMuguga_03g00214	mRNA	TpMuguga_03g00214	NW_876245.1	437753	439183	R	TpMuguga_03g00214	complement(join(437753..437969,438018..438202,438337..439183))	Theileria parva strain Muguga	3500145
TpMuguga_03g00215	mRNA	Prpf19	NW_876245.1	439274	442063	D	TpMuguga_03g00215	join(439274..439569,440403..440690,440783..441133,441243..441746,441854..442063)	Theileria parva strain Muguga	3500146
TpMuguga_03g00216	mRNA	ddx52	NW_876245.1	442140	444464	D	TpMuguga_03g00216	join(442140..442452,442595..442690,442728..442815,442845..442963,443002..443206,443330..443392,443441..443637,443769..444036,444083..444137,444171..444464)	Theileria parva strain Muguga	3500147
TpMuguga_03g00217	mRNA	TpMuguga_03g00217	NW_876245.1	444440	444982	R	TpMuguga_03g00217	complement(<444440..>444982)	Theileria parva strain Muguga	3500148
TpMuguga_03g00218	mRNA	TpMuguga_03g00218	NW_876245.1	445815	446699	R	TpMuguga_03g00218	complement(<445815..>446699)	Theileria parva strain Muguga	3500149
TpMuguga_03g00219	mRNA	TpMuguga_03g00219	NW_876245.1	447270	448151	R	TpMuguga_03g00219	complement(<447270..>448151)	Theileria parva strain Muguga	3500429
TpMuguga_03g00220	mRNA	TpMuguga_03g00220	NW_876245.1	448501	450877	R	TpMuguga_03g00220	complement(join(448501..448946,449016..449144,449212..449319,449472..449607,449673..449999,450224..450385,450489..450627,450765..450877))	Theileria parva strain Muguga	3500430
TpMuguga_03g02560	mRNA	Ppig	NW_876245.1	450967	452951	R	TpMuguga_03g02560	complement(join(450967..451345,451430..451545,451730..452951))	Theileria parva strain Muguga	3500431
TpMuguga_03g00223	mRNA	TpMuguga_03g00223	NW_876245.1	453011	454205	D	TpMuguga_03g00223	join(453011..453120,453244..453375,453588..453868,454077..454205)	Theileria parva strain Muguga	3500433
TpMuguga_03g00224	mRNA	TpMuguga_03g00224	NW_876245.1	454220	456175	D	TpMuguga_03g00224	join(454220..454410,454480..454605,454665..454714,454855..455045,455216..455825,456007..456175)	Theileria parva strain Muguga	3500434
TpMuguga_03g00225	mRNA	sconC	NW_876245.1	456201	457386	D	TpMuguga_03g00225	join(456201..456372,456469..456611,456644..456709,456805..456945,457095..457300,457372..457386)	Theileria parva strain Muguga	3500157
TpMuguga_03g00226	mRNA	Srsf3	NW_876245.1	457058	458371	R	TpMuguga_03g00226	complement(join(457058..457221,457368..457451,457657..457727,457764..457873,458094..458371))	Theileria parva strain Muguga	3500158
TpMuguga_03g00227	mRNA	dld1	NW_876245.1	458372	460712	R	TpMuguga_03g00227	complement(join(458372..459437,459537..459654,459793..460233,460304..460478,460615..460712))	Theileria parva strain Muguga	3500159
TpMuguga_03g00228	mRNA	rpmA	NW_876245.1	460734	461482	D	TpMuguga_03g00228	join(460734..460957,461040..461194,461262..461482)	Theileria parva strain Muguga	3500160
TpMuguga_03g00229	mRNA	TpMuguga_03g00229	NW_876245.1	461629	462375	D	TpMuguga_03g00229	461629..462375	Theileria parva strain Muguga	3500161
TpMuguga_03g00230	mRNA	sdh1	NW_876245.1	462535	465139	R	TpMuguga_03g00230	complement(join(462535..462666,462857..463681,463710..464195,464311..464844,465033..465139))	Theileria parva strain Muguga	3500162
TpMuguga_03g00231	mRNA	RCL1	NW_876245.1	465218	466895	D	TpMuguga_03g00231	join(465218..465584,465652..466895)	Theileria parva strain Muguga	3500175
TpMuguga_03g00232	mRNA	TpMuguga_03g00232	NW_876245.1	467208	469106	D	TpMuguga_03g00232	<467208..469106	Theileria parva strain Muguga	3500176
TpMuguga_03g02420	mRNA	SES1	NW_876245.1	469137	470819	R	TpMuguga_03g02420	complement(469137..470819)	Theileria parva strain Muguga	86047777
TpMuguga_03g00233	mRNA	G-TUB	NW_876245.1	470859	473899	R	TpMuguga_03g00233	complement(join(470859..471025,471059..471126,471179..471349,471459..471536,471593..471784,472533..472847,472988..473115,473205..473265,473322..473453,473508..473899))	Theileria parva strain Muguga	3500177
TpMuguga_03g00234	mRNA	TpMuguga_03g00234	NW_876245.1	473945	474703	R	TpMuguga_03g00234	complement(<473945..>474703)	Theileria parva strain Muguga	3500178
TpMuguga_03g00235	mRNA	TpMuguga_03g00235	NW_876245.1	474857	478634	R	TpMuguga_03g00235	complement(join(474857..475009,475082..475398,475609..477095,477190..478146,478233..478634))	Theileria parva strain Muguga	3500179
TpMuguga_03g00236	mRNA	PRL	NW_876245.1	479235	482734	D	TpMuguga_03g00236	join(479235..479586,479619..479678,479744..479875,479936..480024,480088..480268,480362..480450,480495..480595,480704..480896,480998..481109,481169..481370,481456..482219,482289..482449,482526..482734)	Theileria parva strain Muguga	3500180
TpMuguga_03g02300	mRNA	TpMuguga_03g02300	NW_876245.1	482782	483376	R	TpMuguga_03g02300	complement(482782..483376)	Theileria parva strain Muguga	86047769
TpMuguga_03g00237	mRNA	TpMuguga_03g00237	NW_876245.1	483370	489015	R	TpMuguga_03g00237	complement(483370..489015)	Theileria parva strain Muguga	3500181
TpMuguga_03g02525	mRNA	TpMuguga_03g02525	NW_876245.1	489071	490039	R	TpMuguga_03g02525	complement(489071..>490039)	Theileria parva strain Muguga	86047784
TpMuguga_03g00238	mRNA	TpMuguga_03g00238	NW_876245.1	490141	491786	D	TpMuguga_03g00238	join(<490141..490217,490273..490721,490754..490950,491047..491188,491257..491378,491445..>491786)	Theileria parva strain Muguga	3500182
TpMuguga_03g02240	mRNA	TpMuguga_03g02240	NW_876245.1	491789	492496	R	TpMuguga_03g02240	complement(join(491789..492134,492215..492496))	Theileria parva strain Muguga	86047764
TpMuguga_03g00239	mRNA	TpMuguga_03g00239	NW_876245.1	492563	493941	D	TpMuguga_03g00239	join(492563..492749,492780..492847,492922..493078,493111..493941)	Theileria parva strain Muguga	3500183
TpMuguga_03g02665	mRNA	TpMuguga_03g02665	NW_876245.1	493974	495352	R	TpMuguga_03g02665	complement(join(<493974..494053,494108..495352))	Theileria parva strain Muguga	86047790
TpMuguga_03g02410	mRNA	ZNHIT6	NW_876245.1	495401	496584	R	TpMuguga_03g02410	complement(join(495401..495586,495712..495827,495895..495965,496061..496228,496277..496584))	Theileria parva strain Muguga	3500184
TpMuguga_03g00241	mRNA	TpMuguga_03g00241	NW_876245.1	496588	500802	R	TpMuguga_03g00241	complement(496588..500802)	Theileria parva strain Muguga	3500185
TpMuguga_03g00242	mRNA	TpMuguga_03g00242	NW_876245.1	501770	506050	R	TpMuguga_03g00242	complement(<501770..>506050)	Theileria parva strain Muguga	3500186
TpMuguga_03g00243	mRNA	TpMuguga_03g00243	NW_876245.1	506169	511426	R	TpMuguga_03g00243	complement(join(<506169..506192,506231..>511426))	Theileria parva strain Muguga	3500187
TpMuguga_03g00244	mRNA	TpMuguga_03g00244	NW_876245.1	512490	516052	R	TpMuguga_03g00244	complement(join(512490..515304,515340..515455,515487..515557,515601..516052))	Theileria parva strain Muguga	3500188
TpMuguga_03g00245	mRNA	TpMuguga_03g00245	NW_876245.1	516125	518060	D	TpMuguga_03g00245	516125..>518060	Theileria parva strain Muguga	3500189
TpMuguga_03g00246	mRNA	TpMuguga_03g00246	NW_876245.1	517651	519149	R	TpMuguga_03g00246	complement(517651..519149)	Theileria parva strain Muguga	3500190
TpMuguga_03g00247	mRNA	TpMuguga_03g00247	NW_876245.1	519325	521109	R	TpMuguga_03g00247	complement(<519325..>521109)	Theileria parva strain Muguga	3500191
TpMuguga_03g00248	mRNA	TpMuguga_03g00248	NW_876245.1	521274	523015	R	TpMuguga_03g00248	complement(join(521274..521347,521537..522836,522901..>523015))	Theileria parva strain Muguga	3500192
TpMuguga_03g00249	mRNA	Gorasp1	NW_876245.1	523203	524702	D	TpMuguga_03g00249	join(523203..523347,523442..523480,523641..524702)	Theileria parva strain Muguga	3500193
TpMuguga_03g00250	mRNA	TpMuguga_03g00250	NW_876245.1	524682	526554	R	TpMuguga_03g00250	complement(join(524682..525047,525079..525360,525391..525515,525552..525605,525642..525719,525781..526127,526194..526327,526358..526554))	Theileria parva strain Muguga	3500194
TpMuguga_03g00251	mRNA	TpMuguga_03g00251	NW_876245.1	526614	529066	D	TpMuguga_03g00251	526614..529066	Theileria parva strain Muguga	3500206
TpMuguga_03g00252	mRNA	TpMuguga_03g00252	NW_876245.1	529233	530449	R	TpMuguga_03g00252	complement(join(<529233..530185,530259..530449))	Theileria parva strain Muguga	3500207
TpMuguga_03g00253	mRNA	TpMuguga_03g00253	NW_876245.1	530534	532087	R	TpMuguga_03g00253	complement(530534..532087)	Theileria parva strain Muguga	3500208
TpMuguga_03g00254	mRNA	gpn3	NW_876245.1	532550	533826	D	TpMuguga_03g00254	join(532550..532909,532963..533826)	Theileria parva strain Muguga	3500209
TpMuguga_03g02370	mRNA	TpMuguga_03g02370	NW_876245.1	533822	535562	R	TpMuguga_03g02370	complement(join(533822..533917,533949..534006,534039..534128,534161..534206,534237..534324,534381..534531,534601..534822,534912..535003,535103..535562))	Theileria parva strain Muguga	3500210
TpMuguga_03g00257	mRNA	TpMuguga_03g00257	NW_876245.1	535539	537144	R	TpMuguga_03g00257	complement(join(535539..535893,536023..537144))	Theileria parva strain Muguga	3500212
TpMuguga_03g00258	mRNA	TpMuguga_03g00258	NW_876245.1	537234	539595	R	TpMuguga_03g00258	complement(join(537234..537402,537553..537816,537883..537970,538050..539595))	Theileria parva strain Muguga	3500213
TpMuguga_03g02375	mRNA	TpMuguga_03g02375	NW_876245.1	539699	542487	D	TpMuguga_03g02375	join(539699..540972,541029..541125,541228..>542487)	Theileria parva strain Muguga	3500215
TpMuguga_03g00261	mRNA	ATG3	NW_876245.1	543210	544426	R	TpMuguga_03g00261	complement(join(543210..543296,543444..543607,543691..543798,543829..543897,543927..544023,544101..544426))	Theileria parva strain Muguga	3500218
TpMuguga_03g00262	mRNA	RABGAP1L	NW_876245.1	544616	546207	D	TpMuguga_03g00262	join(544616..544789,544823..544938,544982..545125,545156..545216,545247..545307,545458..545586,545663..546207)	Theileria parva strain Muguga	3500219
TpMuguga_03g00263	mRNA	TpMuguga_03g00263	NW_876245.1	546397	549001	D	TpMuguga_03g00263	546397..549001	Theileria parva strain Muguga	3500220
TpMuguga_03g00264	mRNA	TpMuguga_03g00264	NW_876245.1	549066	550813	R	TpMuguga_03g00264	complement(join(549066..549240,549357..549892,550058..550480,550632..550813))	Theileria parva strain Muguga	3500221
TpMuguga_03g00265	mRNA	TpMuguga_03g00265	NW_876245.1	550891	552411	R	TpMuguga_03g00265	complement(join(<550891..551091,551169..551345,551434..551529,551645..551748,551815..551920,551992..552411))	Theileria parva strain Muguga	3500222
TpMuguga_03g00266	mRNA	TpMuguga_03g00266	NW_876245.1	552753	554646	D	TpMuguga_03g00266	552753..554646	Theileria parva strain Muguga	3500223
TpMuguga_03g00267	mRNA	prpf38a	NW_876245.1	554690	555455	R	TpMuguga_03g00267	complement(join(554690..554878,554931..555022,555134..555455))	Theileria parva strain Muguga	3500224
TpMuguga_03g00268	mRNA	TpMuguga_03g00268	NW_876245.1	555567	559088	R	TpMuguga_03g00268	complement(555567..>559088)	Theileria parva strain Muguga	3500225
TpMuguga_03g00269	mRNA	rplB	NW_876245.1	559249	560668	R	TpMuguga_03g00269	complement(join(<559249..559412,559442..559506,559632..559769,559805..559893,559979..560362,560433..560539,560635..>560668))	Theileria parva strain Muguga	3500226
TpMuguga_03g00270	mRNA	TpMuguga_03g00270	NW_876245.1	560792	562721	D	TpMuguga_03g00270	join(<560792..560878,560919..561283,561316..562243,562277..562556,562690..>562721)	Theileria parva strain Muguga	3500227
TpMuguga_03g02310	mRNA	cyaY	NW_876245.1	562718	563173	D	TpMuguga_03g02310	join(<562718..562792,562825..562972,563003..563053,563103..>563173)	Theileria parva strain Muguga	86047771
TpMuguga_03g00271	mRNA	TpMuguga_03g00271	NW_876245.1	563214	564141	R	TpMuguga_03g00271	complement(join(<563214..563299,563361..>564141))	Theileria parva strain Muguga	3500228
TpMuguga_03g00272	mRNA	TpMuguga_03g00272	NW_876245.1	564229	564966	D	TpMuguga_03g00272	join(<564229..564769,564833..>564966)	Theileria parva strain Muguga	3500229
TpMuguga_03g02400	mRNA	TpMuguga_03g02400	NW_876245.1	565048	566799	R	TpMuguga_03g02400	complement(join(<565048..565326,565360..565389,565426..565599,565632..565727,565784..565885,565916..566064,566159..566314,566349..>566799))	Theileria parva strain Muguga	3500230
TpMuguga_03g00275	mRNA	WRAP53	NW_876245.1	567088	568596	D	TpMuguga_03g00275	join(<567088..567259,567294..567463,567495..567674,567795..567998,568091..568259,568321..568456,568494..>568596)	Theileria parva strain Muguga	3500243
TpMuguga_03g00276	mRNA	TpMuguga_03g00276	NW_876245.1	568669	570074	R	TpMuguga_03g00276	complement(join(568669..569064,569136..569454,569500..569738,569774..569826,569899..570074))	Theileria parva strain Muguga	3500244
TpMuguga_03g02425	mRNA	TpMuguga_03g02425	NW_876245.1	570356	570962	R	TpMuguga_03g02425	complement(join(<570356..570517,570555..570711,570741..570822,570884..>570962))	Theileria parva strain Muguga	86047778
TpMuguga_03g00277	mRNA	TpMuguga_03g00277	NW_876245.1	571479	572185	R	TpMuguga_03g00277	complement(join(<571479..571540,571573..571845,571880..571960,571999..>572185))	Theileria parva strain Muguga	3500245
TpMuguga_03g00278	mRNA	TpMuguga_03g00278	NW_876245.1	572356	572665	R	TpMuguga_03g00278	complement(join(<572356..572378,572427..572521,572601..>572665))	Theileria parva strain Muguga	3500246
TpMuguga_03g00279	mRNA	typA	NW_876245.1	572609	574890	D	TpMuguga_03g00279	join(572609..573228,573260..573778,573810..574251,574281..574890)	Theileria parva strain Muguga	3500247
TpMuguga_03g00280	mRNA	TpMuguga_03g00280	NW_876245.1	574905	576875	D	TpMuguga_03g00280	join(574905..575918,576025..>576875)	Theileria parva strain Muguga	3500248
TpMuguga_03g00281	mRNA	TACP	NW_876245.1	577389	579326	D	TpMuguga_03g00281	577389..579326	Theileria parva strain Muguga	3500249
TpMuguga_03g00282	mRNA	TACP	NW_876245.1	579493	581071	D	TpMuguga_03g00282	join(579493..579980,580022..581071)	Theileria parva strain Muguga	3500250
TpMuguga_03g00283	mRNA	TACP	NW_876245.1	581644	582969	D	TpMuguga_03g00283	<581644..>582969	Theileria parva strain Muguga	3500251
TpMuguga_03g00284	mRNA	TpMuguga_03g00284	NW_876245.1	583146	584742	D	TpMuguga_03g00284	join(583146..583830,583863..584742)	Theileria parva strain Muguga	3500252
TpMuguga_03g00285	mRNA	TpMuguga_03g00285	NW_876245.1	584893	586458	D	TpMuguga_03g00285	join(584893..585577,585610..586458)	Theileria parva strain Muguga	3500253
TpMuguga_03g00286	mRNA	TpMuguga_03g00286	NW_876245.1	586724	587243	D	TpMuguga_03g00286	join(586724..586905,586939..587020,587051..587100,587151..587243)	Theileria parva strain Muguga	3500254
TpMuguga_03g00287	mRNA	TpMuguga_03g00287	NW_876245.1	587855	590387	D	TpMuguga_03g00287	join(587855..587994,588171..589158,589188..590387)	Theileria parva strain Muguga	3500255
TpMuguga_03g00288	mRNA	der	NW_876245.1	590460	592621	D	TpMuguga_03g00288	590460..592621	Theileria parva strain Muguga	3500256
TpMuguga_03g00289	mRNA	TpMuguga_03g00289	NW_876245.1	592694	593738	R	TpMuguga_03g00289	complement(join(<592694..593451,593483..>593738))	Theileria parva strain Muguga	3500257
TpMuguga_03g00290	mRNA	TpMuguga_03g00290	NW_876245.1	593995	596261	R	TpMuguga_03g00290	complement(join(<593995..594285,594319..594723,594903..595294,595326..595611,595645..596261))	Theileria parva strain Muguga	3500258
TpMuguga_03g00291	mRNA	TpMuguga_03g00291	NW_876245.1	596082	597576	R	TpMuguga_03g00291	complement(join(<596082..596261,596350..596429,596500..596662,596727..596785,596836..597237,597268..597576))	Theileria parva strain Muguga	3500259
TpMuguga_03g00292	mRNA	PRPF8	NW_876245.1	598106	607334	R	TpMuguga_03g00292	complement(join(598106..598747,598922..600352,600576..601426,601715..604892,604980..606881,606941..607334))	Theileria parva strain Muguga	3500260
TpMuguga_03g00293	mRNA	PAG1	NW_876245.1	607516	608582	R	TpMuguga_03g00293	complement(join(<607516..607820,608084..>608582))	Theileria parva strain Muguga	3500261
TpMuguga_03g00294	mRNA	U2AF35B	NW_876245.1	608788	610176	R	TpMuguga_03g00294	complement(join(<608788..608884,609046..609247,609515..609724,609835..610176))	Theileria parva strain Muguga	3500262
TpMuguga_03g00295	mRNA	TpMuguga_03g00295	NW_876245.1	610251	611592	D	TpMuguga_03g00295	join(<610251..610394,610525..>611592)	Theileria parva strain Muguga	3500263
TpMuguga_03g00296	mRNA	MEKK1	NW_876245.1	611765	614495	D	TpMuguga_03g00296	611765..614495	Theileria parva strain Muguga	3500264
TpMuguga_03g00297	mRNA	TpMuguga_03g00297	NW_876245.1	614682	616568	R	TpMuguga_03g00297	complement(<614682..>616568)	Theileria parva strain Muguga	3500265
TpMuguga_03g00298	mRNA	TpMuguga_03g00298	NW_876245.1	617124	617912	R	TpMuguga_03g00298	complement(<617124..>617912)	Theileria parva strain Muguga	3500266
TpMuguga_03g00299	mRNA	TpMuguga_03g00299	NW_876245.1	618337	621119	R	TpMuguga_03g00299	complement(join(<618337..619814,619901..620032,620062..620511,620687..620740,621047..>621119))	Theileria parva strain Muguga	3500267
TpMuguga_03g00300	mRNA	TpMuguga_03g00300	NW_876245.1	622200	622805	R	TpMuguga_03g00300	complement(<622200..>622805)	Theileria parva strain Muguga	3500268
TpMuguga_03g00301	mRNA	TpMuguga_03g00301	NW_876245.1	623170	623885	R	TpMuguga_03g00301	complement(join(<623170..623715,623799..>623885))	Theileria parva strain Muguga	3500269
TpMuguga_03g02350	mRNA	prfA	NW_876245.1	624185	627981	D	TpMuguga_03g02350	join(624185..624634,625071..625200,625543..625814,625939..626013,627736..>627981)	Theileria parva strain Muguga	3500270
TpMuguga_03g00304	mRNA	TpMuguga_03g00304	NW_876245.1	628108	629808	D	TpMuguga_03g00304	join(<628108..628345,628433..628705,628738..628884,629042..>629808)	Theileria parva strain Muguga	3500272
TpMuguga_03g00305	mRNA	TpMuguga_03g00305	NW_876245.1	629902	633104	D	TpMuguga_03g00305	join(<629902..630093,630139..630212,630338..630687,631258..>633104)	Theileria parva strain Muguga	3500273
TpMuguga_03g02555	mRNA	CYM	NW_876245.1	634292	638196	R	TpMuguga_03g02555	complement(join(634292..634391,634551..634733,634762..634803,635049..635411,635669..635785,636085..636205,636487..636560,636765..637055,637426..638196))	Theileria parva strain Muguga	3500274
TpMuguga_03g00308	mRNA	TpMuguga_03g00308	NW_876245.1	638073	639773	D	TpMuguga_03g00308	join(638073..638328,638423..639517,639619..639773)	Theileria parva strain Muguga	3500276
TpMuguga_03g00309	mRNA	TpMuguga_03g00309	NW_876245.1	640240	641605	R	TpMuguga_03g00309	complement(join(<640240..640353,640490..640601,640716..640822,640852..640915,641236..641286,641315..641409,641438..>641605))	Theileria parva strain Muguga	3500277
TpMuguga_03g00310	mRNA	TpMuguga_03g00310	NW_876245.1	641817	643268	R	TpMuguga_03g00310	complement(join(<641817..642369,642702..643268))	Theileria parva strain Muguga	3500278
TpMuguga_03g00311	mRNA	Smc3	NW_876245.1	643322	648897	D	TpMuguga_03g00311	join(<643322..643409,644020..645393,645785..646269,646366..646436,646582..646663,646693..646796,646842..646931,647125..647350,647381..647410,647451..647566,647896..648019,648290..648350,648381..648454,648662..648769,648799..>648897)	Theileria parva strain Muguga	3500279
TpMuguga_03g02190	mRNA	SMC3	NW_876245.1	649091	649970	D	TpMuguga_03g02190	join(<649091..649275,649721..649829,649878..649970)	Theileria parva strain Muguga	3500281
TpMuguga_03g00314	mRNA	TpMuguga_03g00314	NW_876245.1	650046	651624	D	TpMuguga_03g00314	join(<650046..650205,650256..650374,650983..>651624)	Theileria parva strain Muguga	3500282
TpMuguga_03g00315	mRNA	CK1	NW_876245.1	652737	653982	D	TpMuguga_03g00315	652737..653982	Theileria parva strain Muguga	3500283
TpMuguga_03g02265	mRNA	TpMuguga_03g02265	NW_876245.1	654815	656307	R	TpMuguga_03g02265	complement(join(654815..655161,655374..655915,655945..656307))	Theileria parva strain Muguga	86047767
TpMuguga_03g02270	mRNA	TpMuguga_03g02270	NW_876245.1	656289	657683	R	TpMuguga_03g02270	complement(656289..>657683)	Theileria parva strain Muguga	3500284
TpMuguga_03g02260	mRNA	citZ	NW_876245.1	658521	660199	R	TpMuguga_03g02260	complement(join(<658521..658612,658642..658840,658904..659145,659358..659424,659455..659622,659710..659897,659931..660199))	Theileria parva strain Muguga	3500285
TpMuguga_03g00318	mRNA	tas	NW_876245.1	660265	664938	D	TpMuguga_03g00318	join(<660265..660805,661045..661196,661326..661531,661906..662288,662473..662575,662627..662697,663161..663248,663322..663427,663544..663949,664203..664345,664428..664504,664535..664577,664680..664938)	Theileria parva strain Muguga	3500286
TpMuguga_03g00319	mRNA	TpMuguga_03g00319	NW_876245.1	665307	665852	R	TpMuguga_03g00319	complement(<665307..>665852)	Theileria parva strain Muguga	3500287
TpMuguga_03g00320	mRNA	TpMuguga_03g00320	NW_876245.1	666697	667922	R	TpMuguga_03g00320	complement(join(666697..667079,667298..667358,667437..667922))	Theileria parva strain Muguga	3500288
TpMuguga_03g02245	mRNA	TpMuguga_03g02245	NW_876245.1	667901	668756	R	TpMuguga_03g02245	complement(join(667901..667983,668018..668134,668164..668220,668249..668459,668560..668624,668658..>668756))	Theileria parva strain Muguga	3500289
TpMuguga_03g02505	mRNA	TpMuguga_03g02505	NW_876245.1	668797	673220	R	TpMuguga_03g02505	complement(join(<668797..669063,669094..669229,669374..669537,669638..669737,669914..669996,670229..670457,670817..670896,670957..671087,671126..671220,671366..671764,671794..672524,672714..672886,673022..>673220))	Theileria parva strain Muguga	3500290
TpMuguga_03g02290	mRNA	TpMuguga_03g02290	NW_876245.1	673443	675090	D	TpMuguga_03g02290	join(<673443..673557,673895..673990,674019..674058,674087..674127,674253..674329,674359..674439,674472..674563,674592..674659,674689..674771,674886..675090)	Theileria parva strain Muguga	3500300
TpMuguga_03g00327	mRNA	TpMuguga_03g00327	NW_876245.1	675111	678990	D	TpMuguga_03g00327	join(675111..676924,676954..677054,677085..677171,677245..678078,678301..678482,678526..678990)	Theileria parva strain Muguga	3500302
TpMuguga_03g00328	mRNA	TpMuguga_03g00328	NW_876245.1	679091	679909	D	TpMuguga_03g00328	679091..679909	Theileria parva strain Muguga	3500303
TpMuguga_03g00329	mRNA	TpMuguga_03g00329	NW_876245.1	680064	681385	D	TpMuguga_03g00329	join(680064..681144,681303..>681385)	Theileria parva strain Muguga	3500304
TpMuguga_03g00330	mRNA	TpMuguga_03g00330	NW_876245.1	681630	683678	D	TpMuguga_03g00330	join(681630..681920,682320..683678)	Theileria parva strain Muguga	3500312
TpMuguga_03g00331	mRNA	TpMuguga_03g00331	NW_876245.1	683735	686509	D	TpMuguga_03g00331	join(683735..685025,685237..686509)	Theileria parva strain Muguga	3500313
TpMuguga_03g00332	mRNA	BOB1	NW_876245.1	686610	687497	R	TpMuguga_03g00332	complement(join(686610..686877,686906..>687497))	Theileria parva strain Muguga	3500314
TpMuguga_03g00333	mRNA	UBC1	NW_876245.1	687513	688199	R	TpMuguga_03g00333	complement(join(<687513..687659,687689..687777,687808..687897,687929..688064,688156..688199))	Theileria parva strain Muguga	3500315
TpMuguga_03g00334	mRNA	PPIL4	NW_876245.1	688271	689094	D	TpMuguga_03g00334	join(<688271..688494,688524..688667,688698..>689094)	Theileria parva strain Muguga	3500316
TpMuguga_03g02680	mRNA	TpMuguga_03g02680	NW_876245.1	689051	692910	R	TpMuguga_03g02680	complement(join(689051..689657,689746..689793,689826..689882,689935..>692910))	Theileria parva strain Muguga	3500317
TpMuguga_03g00337	mRNA	TpMuguga_03g00337	NW_876245.1	693777	695987	D	TpMuguga_03g00337	693777..695987	Theileria parva strain Muguga	3500325
TpMuguga_03g00338	mRNA	TpMuguga_03g00338	NW_876245.1	696114	698018	D	TpMuguga_03g00338	696114..698018	Theileria parva strain Muguga	3500326
TpMuguga_03g00339	mRNA	TpMuguga_03g00339	NW_876245.1	698257	699927	D	TpMuguga_03g00339	<698257..>699927	Theileria parva strain Muguga	3500327
TpMuguga_03g00340	mRNA	TpMuguga_03g00340	NW_876245.1	700324	701937	D	TpMuguga_03g00340	<700324..>701937	Theileria parva strain Muguga	3500328
TpMuguga_03g00341	mRNA	TpMuguga_03g00341	NW_876245.1	702322	703935	D	TpMuguga_03g00341	<702322..>703935	Theileria parva strain Muguga	3500329
TpMuguga_03g00894	mRNA	TpMuguga_03g00894	NW_876245.1	704319	705977	D	TpMuguga_03g00894	<704319..>705977	Theileria parva strain Muguga	3500330
TpMuguga_03g00342	mRNA	TpMuguga_03g00342	NW_876245.1	706361	708022	D	TpMuguga_03g00342	<706361..>708022	Theileria parva strain Muguga	3500331
TpMuguga_03g00343	mRNA	Maea	NW_876245.1	708479	709822	D	TpMuguga_03g00343	<708479..>709822	Theileria parva strain Muguga	3500332
TpMuguga_03g00344	mRNA	ERD2	NW_876245.1	710042	711071	D	TpMuguga_03g00344	join(<710042..710430,710501..710789,710820..>711071)	Theileria parva strain Muguga	3500344
TpMuguga_03g02620	mRNA	TpMuguga_03g02620	NW_876245.1	711232	712705	D	TpMuguga_03g02620	join(711232..711550,711581..711643,711674..712051,712081..712161,712192..712233,712262..712453,712485..712605,712635..>712705)	Theileria parva strain Muguga	3500345
TpMuguga_03g02255	mRNA	TpMuguga_03g02255	NW_876245.1	712804	713492	D	TpMuguga_03g02255	join(<712804..712859,712892..712992,713081..713169,713199..713319,713349..713414,713446..>713492)	Theileria parva strain Muguga	86047766
TpMuguga_03g00346	mRNA	TpMuguga_03g00346	NW_876245.1	713821	715760	D	TpMuguga_03g00346	join(<713821..713956,713989..714470,714505..714607,714641..714732,714787..715148,715182..715269,715302..715533,715564..>715760)	Theileria parva strain Muguga	3500346
TpMuguga_03g00347	mRNA	TpMuguga_03g00347	NW_876245.1	715833	717599	R	TpMuguga_03g00347	complement(<715833..717599)	Theileria parva strain Muguga	3500347
TpMuguga_03g00348	mRNA	TpMuguga_03g00348	NW_876245.1	717675	719802	D	TpMuguga_03g00348	join(717675..718832,718864..719093,719123..719802)	Theileria parva strain Muguga	3500348
TpMuguga_03g00895	mRNA	TpMuguga_03g00895	NW_876245.1	719960	721553	D	TpMuguga_03g00895	join(719960..720574,720605..720834,720866..721553)	Theileria parva strain Muguga	3500349
TpMuguga_03g00349	mRNA	TpMuguga_03g00349	NW_876245.1	721754	723656	D	TpMuguga_03g00349	join(721754..721866,721908..721982,722012..722116,722148..722212,722243..722297,722338..723209,723243..723326,723357..723485,723520..723656)	Theileria parva strain Muguga	3500350
TpMuguga_03g00350	mRNA	cyn-10	NW_876245.1	723658	724478	R	TpMuguga_03g00350	complement(join(723658..723815,723877..723998,724045..724153,724187..724239,724274..724478))	Theileria parva strain Muguga	3500351
TpMuguga_03g02600	mRNA	TpMuguga_03g02600	NW_876245.1	724506	724898	D	TpMuguga_03g02600	join(<724506..724709,724752..>724898)	Theileria parva strain Muguga	86047788
TpMuguga_03g00351	mRNA	VPS4A	NW_876245.1	724961	726545	D	TpMuguga_03g00351	join(<724961..725090,725126..725284,725315..725383,725465..725536,725570..725680,725710..725904,725942..726020,726052..726183,726241..726367,726398..726545)	Theileria parva strain Muguga	3500352
TpMuguga_03g00352	mRNA	TpMuguga_03g00352	NW_876245.1	726683	730339	R	TpMuguga_03g00352	complement(726683..730339)	Theileria parva strain Muguga	3500353
TpMuguga_03g02360	mRNA	TpMuguga_03g02360	NW_876245.1	730662	733031	D	TpMuguga_03g02360	join(730662..731026,731099..731149,731180..731255,731302..731433,731463..731563,731596..731930,731961..732039,732070..732152,732185..732335,732368..732511,732569..732718,732763..732924,732954..>733031)	Theileria parva strain Muguga	3500363
TpMuguga_03g02470	mRNA	TpMuguga_03g02470	NW_876245.1	733240	733929	D	TpMuguga_03g02470	join(<733240..733256,733289..733445,733478..733703,733734..733858,733886..733929)	Theileria parva strain Muguga	86047783
TpMuguga_03g00357	mRNA	CTSC	NW_876245.1	734008	735814	R	TpMuguga_03g00357	complement(join(<734008..734204,734234..735139,735170..735274,735379..735528,735558..735679,735711..>735814))	Theileria parva strain Muguga	3500364
TpMuguga_03g00358	mRNA	TpMuguga_03g00358	NW_876245.1	736287	737057	R	TpMuguga_03g00358	complement(join(736287..736342,736372..736643,736674..736760,736790..736874,736903..>737057))	Theileria parva strain Muguga	3500365
TpMuguga_03g02235	mRNA	TpMuguga_03g02235	NW_876245.1	737575	737947	R	TpMuguga_03g02235	complement(join(<737575..737639,737677..737803,737834..>737947))	Theileria parva strain Muguga	86047763
TpMuguga_03g02205	mRNA	TpMuguga_03g02205	NW_876245.1	738077	739760	R	TpMuguga_03g02205	complement(join(<738077..738226,738284..738366,738477..738578,738619..738870,738903..739760))	Theileria parva strain Muguga	3500366
TpMuguga_03g00360	mRNA	TpMuguga_03g00360	NW_876245.1	739795	744028	D	TpMuguga_03g00360	739795..744028	Theileria parva strain Muguga	3500367
TpMuguga_03g00361	mRNA	ABHD17B	NW_876245.1	744147	745425	R	TpMuguga_03g00361	complement(join(<744147..744754,744785..744871,745019..745140,745295..>745425))	Theileria parva strain Muguga	3500368
TpMuguga_03g00362	mRNA	TpMuguga_03g00362	NW_876245.1	745423	746934	D	TpMuguga_03g00362	join(745423..745834,745865..746006,746091..746156,746251..746319,746350..746424,746454..746507,746540..746617,746648..746724,746755..746809,746840..746934)	Theileria parva strain Muguga	3500369
TpMuguga_03g00363	mRNA	TpMuguga_03g00363	NW_876245.1	747081	747650	R	TpMuguga_03g00363	complement(<747081..>747650)	Theileria parva strain Muguga	3500370
TpMuguga_03g00364	mRNA	TpMuguga_03g00364	NW_876245.1	748171	748893	R	TpMuguga_03g00364	complement(join(748171..748244,748273..748461,748558..748893))	Theileria parva strain Muguga	3500371
TpMuguga_03g00365	mRNA	ISPF	NW_876245.1	749060	749692	D	TpMuguga_03g00365	<749060..>749692	Theileria parva strain Muguga	3500372
TpMuguga_03g00366	mRNA	TpMuguga_03g00366	NW_876245.1	749766	751279	R	TpMuguga_03g00366	complement(join(749766..750127,750206..750351,750436..751279))	Theileria parva strain Muguga	3500373
TpMuguga_03g00367	mRNA	TpMuguga_03g00367	NW_876245.1	751640	756799	D	TpMuguga_03g00367	<751640..>756799	Theileria parva strain Muguga	3500374
TpMuguga_03g00368	mRNA	TpMuguga_03g00368	NW_876245.1	756875	758112	R	TpMuguga_03g00368	complement(756875..758112)	Theileria parva strain Muguga	3500375
TpMuguga_03g00369	mRNA	TpMuguga_03g00369	NW_876245.1	758355	761572	R	TpMuguga_03g00369	complement(join(<758355..758474,758568..760684,760774..>761572))	Theileria parva strain Muguga	3500376
TpMuguga_03g00370	mRNA	emo-1	NW_876245.1	761969	762497	D	TpMuguga_03g00370	761969..762497	Theileria parva strain Muguga	3500377
TpMuguga_03g00371	mRNA	rpl37A	NW_876245.1	762526	763335	D	TpMuguga_03g00371	join(762526..762824,762927..763037,763168..763335)	Theileria parva strain Muguga	3500378
TpMuguga_03g00372	mRNA	TpMuguga_03g00372	NW_876245.1	763395	764578	R	TpMuguga_03g00372	complement(join(763395..763641,763748..764578))	Theileria parva strain Muguga	3500379
TpMuguga_03g00373	mRNA	uap56	NW_876245.1	764621	766659	D	TpMuguga_03g00373	join(764621..766027,766264..766659)	Theileria parva strain Muguga	3500380
TpMuguga_03g00374	mRNA	TpMuguga_03g00374	NW_876245.1	766786	769009	R	TpMuguga_03g00374	complement(join(<766786..766950,767055..767133,767166..767301,767400..767594,767692..767782,767851..767939,768001..768177,768274..768567,768744..769009))	Theileria parva strain Muguga	3500423
TpMuguga_03g00375	mRNA	cta4	NW_876245.1	769085	774269	D	TpMuguga_03g00375	join(769085..773190,773326..773513,773659..774269)	Theileria parva strain Muguga	3500424
TpMuguga_03g00376	mRNA	Brf1	NW_876245.1	774426	776064	R	TpMuguga_03g00376	complement(774426..776064)	Theileria parva strain Muguga	3500425
TpMuguga_03g00377	mRNA	TpMuguga_03g00377	NW_876245.1	776111	780659	R	TpMuguga_03g00377	complement(join(<776111..776169,776204..776267,776305..776614,776785..>780659))	Theileria parva strain Muguga	3500426
TpMuguga_03g00378	mRNA	TpMuguga_03g00378	NW_876245.1	780809	781665	D	TpMuguga_03g00378	780809..781665	Theileria parva strain Muguga	3500427
TpMuguga_03g00379	mRNA	TpMuguga_03g00379	NW_876245.1	781669	784495	R	TpMuguga_03g00379	complement(781669..784495)	Theileria parva strain Muguga	3500428
TpMuguga_03g02330	mRNA	TpMuguga_03g02330	NW_876245.1	784578	789552	D	TpMuguga_03g02330	join(784578..784704,784850..784963,785005..785070,785103..785182,785213..785360,785410..785531,785562..785640,785672..785998,786031..786133,786167..786513,786547..787017,787051..787401,787434..787516,787558..787691,787722..787783,787817..787869,787902..788076,788109..788152,788238..789345,789376..>789552)	Theileria parva strain Muguga	3500355
TpMuguga_03g00383	mRNA	TpMuguga_03g00383	NW_876245.1	789634	790729	R	TpMuguga_03g00383	complement(join(<789634..789721,789752..789903,789963..790433,790483..790568,790604..790729))	Theileria parva strain Muguga	3500357
TpMuguga_03g00382	mRNA	mus81	NW_876245.1	790891	794151	D	TpMuguga_03g00382	join(790891..791250,791338..791438,791491..793506,793647..793983,794013..794151)	Theileria parva strain Muguga	3500358
TpMuguga_03g00384	mRNA	TpMuguga_03g00384	NW_876245.1	794148	795169	R	TpMuguga_03g00384	complement(join(<794148..794200,794234..795169))	Theileria parva strain Muguga	3500359
TpMuguga_03g00385	mRNA	rrp6	NW_876245.1	795264	798627	R	TpMuguga_03g00385	complement(join(<795264..795797,795831..795857,795893..795997,796091..796183,796278..796638,796796..>798627))	Theileria parva strain Muguga	3500360
TpMuguga_03g00386	mRNA	SNRPE	NW_876245.1	798947	799428	R	TpMuguga_03g00386	complement(join(<798947..799084,799202..799291,799381..>799428))	Theileria parva strain Muguga	3500339
TpMuguga_03g00387	mRNA	Kars	NW_876245.1	799545	801848	R	TpMuguga_03g00387	complement(join(<799545..799598,799629..799772,799849..799975,800046..800131,800162..800298,800389..800505,800552..800653,800685..800920,800976..801147,801177..801444,801503..801631,801765..>801848))	Theileria parva strain Muguga	3500340
TpMuguga_03g00388	mRNA	TpMuguga_03g00388	NW_876245.1	801909	802782	D	TpMuguga_03g00388	join(<801909..802263,802326..802396,802442..802528,802600..802670,802701..>802782)	Theileria parva strain Muguga	3500341
TpMuguga_03g00389	mRNA	TpMuguga_03g00389	NW_876245.1	802940	803905	D	TpMuguga_03g00389	<802940..>803905	Theileria parva strain Muguga	3500342
TpMuguga_03g00390	mRNA	TpMuguga_03g00390	NW_876245.1	803928	804805	R	TpMuguga_03g00390	complement(join(803928..804271,804302..804805))	Theileria parva strain Muguga	3500343
TpMuguga_03g00391	mRNA	TpMuguga_03g00391	NW_876245.1	804857	806161	D	TpMuguga_03g00391	804857..806161	Theileria parva strain Muguga	3500333
TpMuguga_03g00392	mRNA	TpMuguga_03g00392	NW_876245.1	806202	808228	D	TpMuguga_03g00392	join(806202..806902,806992..807687,807780..808228)	Theileria parva strain Muguga	3500334
TpMuguga_03g00393	mRNA	TpMuguga_03g00393	NW_876245.1	808247	812864	R	TpMuguga_03g00393	complement(join(808247..808926,809044..811155,811263..812864))	Theileria parva strain Muguga	3500335
TpMuguga_03g00394	mRNA	DHX38	NW_876245.1	812902	816662	D	TpMuguga_03g00394	join(812902..814031,814136..814808,814883..815020,815125..815505,815649..816347,816501..816662)	Theileria parva strain Muguga	3500336
TpMuguga_03g00395	mRNA	UVH1	NW_876245.1	816760	821307	R	TpMuguga_03g00395	complement(join(<816760..816876,816909..817628,817662..817752,817821..817942,818045..819449,819620..>821307))	Theileria parva strain Muguga	3500337
TpMuguga_03g00396	mRNA	TpMuguga_03g00396	NW_876245.1	821537	822708	D	TpMuguga_03g00396	join(<821537..821639,821695..821779,821857..822037,822132..822708)	Theileria parva strain Muguga	3500338
TpMuguga_03g00397	mRNA	TpMuguga_03g00397	NW_876245.1	822772	825390	D	TpMuguga_03g00397	join(822772..822924,822996..>825390)	Theileria parva strain Muguga	3500305
TpMuguga_03g00398	mRNA	rpf1	NW_876245.1	825455	826994	D	TpMuguga_03g00398	join(825455..825530,825622..825968,826136..826208,826242..826365,826395..826555,826591..826664,826769..826847,826878..826994)	Theileria parva strain Muguga	3500306
TpMuguga_03g00399	mRNA	TpMuguga_03g00399	NW_876245.1	827115	829269	D	TpMuguga_03g00399	<827115..829269	Theileria parva strain Muguga	3500307
TpMuguga_03g00400	mRNA	TpMuguga_03g00400	NW_876245.1	829538	830288	R	TpMuguga_03g00400	complement(<829538..830288)	Theileria parva strain Muguga	3500308
TpMuguga_03g00401	mRNA	TpMuguga_03g00401	NW_876245.1	830493	831426	R	TpMuguga_03g00401	complement(join(830493..830553,830610..831426))	Theileria parva strain Muguga	3500309
TpMuguga_03g02640	mRNA	TpMuguga_03g02640	NW_876245.1	831534	836859	R	TpMuguga_03g02640	complement(join(<831534..833332,833457..>836859))	Theileria parva strain Muguga	3500310
TpMuguga_03g00404	mRNA	TpMuguga_03g00404	NW_876245.1	837556	839587	D	TpMuguga_03g00404	join(837556..837798,837829..837876,837938..837979,838014..838163,839028..839111,839190..839273,839345..839587)	Theileria parva strain Muguga	3500319
TpMuguga_03g02405	mRNA	TpMuguga_03g02405	NW_876245.1	840018	843631	D	TpMuguga_03g02405	join(840018..842036,842099..843021,843088..843487,843563..843631)	Theileria parva strain Muguga	86047776
TpMuguga_03g02695	mRNA	TpMuguga_03g02695	NW_876245.1	843706	846023	D	TpMuguga_03g02695	join(843706..843958,844059..844304,844446..844672,844753..844914,845031..845204,845290..845878,845971..>846023)	Theileria parva strain Muguga	3500321
TpMuguga_03g00407	mRNA	PHB4	NW_876245.1	846106	847054	D	TpMuguga_03g00407	846106..847054	Theileria parva strain Muguga	3500322
TpMuguga_03g00408	mRNA	TpMuguga_03g00408	NW_876245.1	847160	848494	R	TpMuguga_03g00408	complement(join(847160..847408,847492..>848494))	Theileria parva strain Muguga	3500323
TpMuguga_03g02690	mRNA	lvsA	NW_876245.1	848578	852790	D	TpMuguga_03g02690	join(848578..849184,849234..849804,849898..850517,850661..850914,851061..851248,851392..851983,852065..852167,852205..852790)	Theileria parva strain Muguga	3500324
TpMuguga_03g00411	mRNA	AERO1	NW_876245.1	852821	854828	R	TpMuguga_03g00411	complement(join(852821..853073,853227..853347,853434..853859,853974..854828))	Theileria parva strain Muguga	3500293
TpMuguga_03g00412	mRNA	tim22	NW_876245.1	855072	856144	D	TpMuguga_03g00412	join(855072..855318,855453..855637,855733..855805,855835..856144)	Theileria parva strain Muguga	3500294
TpMuguga_03g00413	mRNA	TpMuguga_03g00413	NW_876245.1	855841	857264	R	TpMuguga_03g00413	complement(join(855841..856109,856161..856232,856310..856532,856612..856780,856853..856923,857033..857135,857188..857264))	Theileria parva strain Muguga	3500295
TpMuguga_03g00414	mRNA	TpMuguga_03g00414	NW_876245.1	857285	858917	R	TpMuguga_03g00414	complement(857285..858917)	Theileria parva strain Muguga	3500296
TpMuguga_03g00415	mRNA	TpMuguga_03g00415	NW_876245.1	858983	860117	D	TpMuguga_03g00415	join(858983..859113,859229..859400,859520..859680,859793..859983,860030..860117)	Theileria parva strain Muguga	3500297
TpMuguga_03g00416	mRNA	leuS	NW_876245.1	860171	862936	R	TpMuguga_03g00416	complement(860171..>862936)	Theileria parva strain Muguga	3500298
TpMuguga_03g00417	mRNA	TpMuguga_03g00417	NW_876245.1	863288	864837	D	TpMuguga_03g00417	join(<863288..863361,863457..863604,863707..863959,864071..864346,864432..864837)	Theileria parva strain Muguga	3500435
TpMuguga_03g00418	mRNA	NAA38	NW_876245.1	865008	865583	D	TpMuguga_03g00418	join(865008..865135,865255..865423,865484..865583)	Theileria parva strain Muguga	3500436
TpMuguga_03g00420	mRNA	P4HA2	NW_876245.1	865214	866840	R	TpMuguga_03g00420	complement(join(865214..865403,865443..865817,865902..866130,866263..866840))	Theileria parva strain Muguga	3500437
TpMuguga_03g00419	mRNA	pdiA	NW_876245.1	866895	869083	D	TpMuguga_03g00419	join(866895..867261,867394..867592,867679..868414,868562..869083)	Theileria parva strain Muguga	3500438
TpMuguga_03g00421	mRNA	DHDDS	NW_876245.1	869243	870491	D	TpMuguga_03g00421	join(869243..869336,869368..869515,869587..869729,869845..869961,869994..870222,870339..>870491)	Theileria parva strain Muguga	3500439
TpMuguga_03g00422	mRNA	TpMuguga_03g00422	NW_876245.1	870527	872025	R	TpMuguga_03g00422	complement(870527..872025)	Theileria parva strain Muguga	3500440
TpMuguga_03g00423	mRNA	Ash2l	NW_876245.1	872235	873781	R	TpMuguga_03g00423	complement(join(872235..872323,872386..872474,872553..872637,872716..872814,872865..872995,873037..873129,873162..873208,873376..873470,873546..873781))	Theileria parva strain Muguga	3500195
TpMuguga_03g02645	mRNA	TpMuguga_03g02645	NW_876245.1	873805	876670	D	TpMuguga_03g02645	join(873805..873961,874050..874139,874176..874317,874375..874534,874590..874700,874752..874809,874842..874899,875019..875202,875254..875306,875371..875425,875461..875537,875594..875687,875758..875848,875917..876012,876074..876143,876325..>876670)	Theileria parva strain Muguga	3500196
TpMuguga_03g00425	mRNA	NBP35	NW_876245.1	876710	878214	R	TpMuguga_03g00425	complement(join(876710..876984,877120..877723,877778..877825,877857..878214))	Theileria parva strain Muguga	3500197
TpMuguga_03g02195	mRNA	PIP5K4	NW_876245.1	878308	880255	D	TpMuguga_03g02195	join(878308..878572,878670..878884,878953..879037,879120..879222,879337..879423,879455..879540,879663..880255)	Theileria parva strain Muguga	3500199
TpMuguga_03g00428	mRNA	rps28b	NW_876245.1	880467	880670	R	TpMuguga_03g00428	complement(<880467..>880670)	Theileria parva strain Muguga	3500238
TpMuguga_03g00429	mRNA	Imp3	NW_876245.1	881046	881964	R	TpMuguga_03g00429	complement(join(<881046..881200,881288..881442,881512..881619,881718..881964))	Theileria parva strain Muguga	3500239
TpMuguga_03g00430	mRNA	TpMuguga_03g00430	NW_876245.1	881976	883396	R	TpMuguga_03g00430	complement(join(881976..882537,882602..882779,882830..883116,883185..883396))	Theileria parva strain Muguga	3500240
TpMuguga_03g00432	mRNA	rfc4	NW_876245.1	885045	886702	D	TpMuguga_03g00432	join(885045..885273,885392..885498,885531..885654,885772..885906,885939..886040,886105..886170,886203..886274,886357..886479,886547..886605,886636..886702)	Theileria parva strain Muguga	3500242
TpMuguga_03g00433	mRNA	Ddx56	NW_876245.1	886932	888964	R	TpMuguga_03g00433	complement(join(886932..887734,887803..887899,888032..888687,888759..888964))	Theileria parva strain Muguga	3500232
TpMuguga_03g00434	mRNA	SPAG1	NW_876245.1	889015	890170	D	TpMuguga_03g00434	join(889015..889601,889689..889786,889887..889927,889961..890170)	Theileria parva strain Muguga	3500233
TpMuguga_03g00435	mRNA	TpMuguga_03g00435	NW_876245.1	890441	890923	R	TpMuguga_03g00435	complement(join(<890441..890534,890602..890655,890688..890757,890791..>890923))	Theileria parva strain Muguga	3500234
TpMuguga_03g00436	mRNA	TpMuguga_03g00436	NW_876245.1	891028	893455	R	TpMuguga_03g00436	complement(join(891028..891198,891270..891330,891362..891559,891639..891703,891800..892032,892118..892614,892699..892773,892805..892941,893011..893164,893229..893455))	Theileria parva strain Muguga	3500235
TpMuguga_03g00437	mRNA	TpMuguga_03g00437	NW_876245.1	893456	894108	R	TpMuguga_03g00437	complement(join(893456..893612,893661..893691,893749..893856,893952..894108))	Theileria parva strain Muguga	3500236
TpMuguga_03g00438	mRNA	TpMuguga_03g00438	NW_876245.1	894570	898444	D	TpMuguga_03g00438	join(894570..896774,896852..898056,898141..898444)	Theileria parva strain Muguga	3500237
TpMuguga_03g00439	mRNA	TpMuguga_03g00439	NW_876245.1	898469	900663	D	TpMuguga_03g00439	join(898469..900189,900263..900447,900479..900663)	Theileria parva strain Muguga	3500200
TpMuguga_03g00440	mRNA	TpMuguga_03g00440	NW_876245.1	900664	901070	D	TpMuguga_03g00440	900664..901070	Theileria parva strain Muguga	3500201
TpMuguga_03g00441	mRNA	TpMuguga_03g00441	NW_876245.1	901071	902717	D	TpMuguga_03g00441	901071..902717	Theileria parva strain Muguga	3500202
TpMuguga_03g00442	mRNA	TpMuguga_03g00442	NW_876245.1	902837	903836	D	TpMuguga_03g00442	join(902837..903108,903278..903836)	Theileria parva strain Muguga	3500203
TpMuguga_03g00443	mRNA	ruvbl2	NW_876245.1	903868	906028	R	TpMuguga_03g00443	complement(join(903868..904019,904052..904131,904212..904356,904443..904608,904671..904853,904951..905441,905544..905662,905788..906028))	Theileria parva strain Muguga	3500204
TpMuguga_03g00444	mRNA	Tmco1	NW_876245.1	906029	907061	R	TpMuguga_03g00444	complement(join(906029..906196,906231..906476,906511..906574,906660..907061))	Theileria parva strain Muguga	3500205
TpMuguga_03g00445	mRNA	PCNA	NW_876245.1	907039	908362	D	TpMuguga_03g00445	join(907039..907342,907537..907692,907733..908013,908046..908102,908195..>908362)	Theileria parva strain Muguga	3500169
TpMuguga_03g00446	mRNA	PBG1	NW_876245.1	908417	909443	R	TpMuguga_03g00446	complement(join(908417..908509,908540..908741,908848..909195,909347..909443))	Theileria parva strain Muguga	3500170
TpMuguga_03g00447	mRNA	NAP1	NW_876245.1	909528	910830	R	TpMuguga_03g00447	complement(join(909528..909687,909780..909836,909925..910005,910072..910434,910466..910606,910637..910704,910782..>910830))	Theileria parva strain Muguga	3500171
TpMuguga_03g00448	mRNA	ube2d2	NW_876245.1	911434	912499	D	TpMuguga_03g00448	join(911434..911618,911661..911764,911969..912038,912126..912273,912374..912499)	Theileria parva strain Muguga	3500172
TpMuguga_03g00449	mRNA	TpMuguga_03g00449	NW_876245.1	912518	913441	R	TpMuguga_03g00449	complement(join(912518..912716,912750..913194,913243..913441))	Theileria parva strain Muguga	3500173
TpMuguga_03g00450	mRNA	TpMuguga_03g00450	NW_876245.1	913502	917205	D	TpMuguga_03g00450	join(913502..913816,913975..915125,915218..915409,915572..>917205)	Theileria parva strain Muguga	3500174
TpMuguga_03g00451	mRNA	TpMuguga_03g00451	NW_876245.1	917768	921542	R	TpMuguga_03g00451	complement(join(917768..920703,920923..921018,921085..921150,921197..921262,921297..921542))	Theileria parva strain Muguga	3500163
TpMuguga_03g00452	mRNA	TpMuguga_03g00452	NW_876245.1	921297	922939	R	TpMuguga_03g00452	complement(join(921297..921542,921723..922046,922079..922249,922446..922525,922562..922677,922722..922830,922876..922939))	Theileria parva strain Muguga	3500164
TpMuguga_03g02625	mRNA	CACTIN	NW_876245.1	923003	924892	R	TpMuguga_03g02625	complement(join(<923003..923522,923676..923752,923782..923873,923902..924001,924042..924250,924281..924461,924492..924892))	Theileria parva strain Muguga	3500165
TpMuguga_03g00455	mRNA	TpMuguga_03g00455	NW_876245.1	925158	926666	R	TpMuguga_03g00455	complement(join(925158..925385,925417..925517,925548..925686,925716..925812,925842..926120,926151..926185,926217..926318,926351..926666))	Theileria parva strain Muguga	3500167
TpMuguga_03g00456	mRNA	tad3	NW_876245.1	926747	927951	D	TpMuguga_03g00456	join(926747..927336,927389..927438,927521..>927951)	Theileria parva strain Muguga	3500168
TpMuguga_03g00457	mRNA	TpMuguga_03g00457	NW_876245.1	927914	928539	D	TpMuguga_03g00457	join(927914..928180,928250..928381,928422..>928539)	Theileria parva strain Muguga	3500150
TpMuguga_03g00458	mRNA	TpMuguga_03g00458	NW_876245.1	928660	930397	D	TpMuguga_03g00458	join(<928660..929127,929259..929335,929389..929556,929595..929669,929788..930397)	Theileria parva strain Muguga	3500151
TpMuguga_03g00459	mRNA	TpMuguga_03g00459	NW_876245.1	930575	931707	R	TpMuguga_03g00459	complement(<930575..931707)	Theileria parva strain Muguga	3500152
TpMuguga_03g00460	mRNA	TpMuguga_03g00460	NW_876245.1	932009	935083	R	TpMuguga_03g00460	complement(join(<932009..934485,934534..>935083))	Theileria parva strain Muguga	3500153
TpMuguga_03g00896	mRNA	TpMuguga_03g00896	NW_876245.1	935282	937843	R	TpMuguga_03g00896	complement(join(935282..935869,936001..>937843))	Theileria parva strain Muguga	3500154
TpMuguga_03g00897	mRNA	TpMuguga_03g00897	NW_876245.1	938533	940110	R	TpMuguga_03g00897	complement(join(<938533..939418,939452..>940110))	Theileria parva strain Muguga	3500155
TpMuguga_03g00898	mRNA	TpMuguga_03g00898	NW_876245.1	940335	942564	R	TpMuguga_03g00898	complement(join(940335..941749,941782..942564))	Theileria parva strain Muguga	3500156
TpMuguga_03g00899	mRNA	TpMuguga_03g00899	NW_876245.1	943280	945033	R	TpMuguga_03g00899	complement(join(943280..944465,944523..945033))	Theileria parva strain Muguga	3500409
TpMuguga_03g00900	mRNA	TpMuguga_03g00900	NW_876245.1	945267	947394	R	TpMuguga_03g00900	complement(945267..>947394)	Theileria parva strain Muguga	3500410
TpMuguga_03g00462	mRNA	METAP1	NW_876245.1	948081	950185	D	TpMuguga_03g00462	join(948081..948343,948374..948519,948550..948667,948700..949623,949708..949819,949850..949992,950068..>950185)	Theileria parva strain Muguga	3500411
TpMuguga_03g00463	mRNA	TpMuguga_03g00463	NW_876245.1	950339	951913	R	TpMuguga_03g00463	complement(join(<950339..951483,951541..>951913))	Theileria parva strain Muguga	3500412
TpMuguga_03g00901	mRNA	TpMuguga_03g00901	NW_876245.1	952707	954275	R	TpMuguga_03g00901	complement(<952707..>954275)	Theileria parva strain Muguga	3500413
TpMuguga_03g00902	mRNA	TpMuguga_03g00902	NW_876245.1	955036	956613	R	TpMuguga_03g00902	complement(<955036..>956613)	Theileria parva strain Muguga	3500414
TpMuguga_03g00903	mRNA	TpMuguga_03g00903	NW_876245.1	957610	959237	R	TpMuguga_03g00903	complement(join(957610..958517,958585..>959237))	Theileria parva strain Muguga	3500415
TpMuguga_03g00464	mRNA	TpMuguga_03g00464	NW_876245.1	959605	960870	D	TpMuguga_03g00464	join(959605..959856,959894..959982,960018..960056,960088..960378,960423..960487,960518..960554,960584..960641,960671..>960870)	Theileria parva strain Muguga	3500416
TpMuguga_03g00465	mRNA	TpMuguga_03g00465	NW_876245.1	961003	963565	R	TpMuguga_03g00465	complement(join(961003..962250,962365..>963565))	Theileria parva strain Muguga	3499995
TpMuguga_03g00466	mRNA	Dmxl2	NW_876245.1	963874	969698	R	TpMuguga_03g00466	complement(join(<963874..964865,965093..>969698))	Theileria parva strain Muguga	3499996
TpMuguga_03g00467	mRNA	Nemf	NW_876245.1	970078	974099	R	TpMuguga_03g00467	complement(join(970078..973398,973521..973739,973819..974099))	Theileria parva strain Muguga	3499997
TpMuguga_03g02615	mRNA	TpMuguga_03g02615	NW_876245.1	974350	975396	D	TpMuguga_03g02615	join(<974350..974593,974660..974883,974958..975041,975071..975170,975201..975283,975316..>975396)	Theileria parva strain Muguga	3499998
TpMuguga_03g02170	mRNA	TpMuguga_03g02170	NW_876245.1	975469	975783	D	TpMuguga_03g02170	join(<975469..975534,975566..975688,975721..>975783)	Theileria parva strain Muguga	86047757
TpMuguga_03g00469	mRNA	NHP6	NW_876245.1	975851	976326	R	TpMuguga_03g00469	complement(975851..976326)	Theileria parva strain Muguga	3499999
TpMuguga_03g00470	mRNA	orc1	NW_876245.1	976369	981014	D	TpMuguga_03g00470	join(976369..977604,978016..978194,978437..978616,978751..978937,979147..979414,979586..979752,979825..979915,980017..980128,980376..980727,980906..981014)	Theileria parva strain Muguga	3500000
TpMuguga_03g00471	mRNA	TpMuguga_03g00471	NW_876245.1	981956	983946	R	TpMuguga_03g00471	complement(981956..983946)	Theileria parva strain Muguga	3499967
TpMuguga_03g00472	mRNA	TpMuguga_03g00472	NW_876245.1	984261	985312	R	TpMuguga_03g00472	complement(join(984261..984876,984906..985312))	Theileria parva strain Muguga	3499968
TpMuguga_03g00473	mRNA	TpMuguga_03g00473	NW_876245.1	985171	985739	D	TpMuguga_03g00473	join(<985171..985273,985436..985548,985589..985739)	Theileria parva strain Muguga	3499969
TpMuguga_03g00474	mRNA	sua5	NW_876245.1	986560	988384	R	TpMuguga_03g00474	complement(986560..>988384)	Theileria parva strain Muguga	3499970
TpMuguga_03g00475	mRNA	TpMuguga_03g00475	NW_876245.1	988406	989907	R	TpMuguga_03g00475	complement(join(<988406..988982,989016..989907))	Theileria parva strain Muguga	3499971
TpMuguga_03g00476	mRNA	TpMuguga_03g00476	NW_876245.1	989970	991343	D	TpMuguga_03g00476	join(989970..990083,990137..990244,990275..990356,990407..990590,990907..990997,991061..991216,991245..991343)	Theileria parva strain Muguga	3499972
TpMuguga_03g00477	mRNA	TpMuguga_03g00477	NW_876245.1	992004	992702	D	TpMuguga_03g00477	<992004..>992702	Theileria parva strain Muguga	3499982
TpMuguga_03g02575	mRNA	TpMuguga_03g02575	NW_876245.1	993382	993811	R	TpMuguga_03g02575	complement(join(<993382..993546,993603..993677,993710..>993811))	Theileria parva strain Muguga	86047785
TpMuguga_03g00478	mRNA	DED1	NW_876245.1	994017	997203	R	TpMuguga_03g00478	complement(join(994017..996169,996972..997203))	Theileria parva strain Muguga	3499983
TpMuguga_03g00479	mRNA	Atp8a1	NW_876245.1	997919	1004092	D	TpMuguga_03g00479	join(997919..998361,998520..998697,999269..999785,1000140..1001066,1001543..1003639,1003878..1004092)	Theileria parva strain Muguga	3499984
TpMuguga_03g00480	mRNA	Cltc	NW_876245.1	1004860	1012653	R	TpMuguga_03g00480	complement(join(1004860..1006021,1006291..1007241,1007688..1008422,1009019..1010026,1010376..1010731,1011006..1011682,1012056..1012292,1012409..1012653))	Theileria parva strain Muguga	3499985
TpMuguga_03g00481	mRNA	SSL1	NW_876245.1	1012665	1015644	D	TpMuguga_03g00481	join(<1012665..1012782,1013339..1013492,1013906..1013996,1014099..1014281,1014358..1014534,1014883..1014977,1015041..1015200,1015350..1015430,1015489..1015644)	Theileria parva strain Muguga	3499986
TpMuguga_03g00482	mRNA	TpMuguga_03g00482	NW_876245.1	1016138	1016779	D	TpMuguga_03g00482	<1016138..>1016779	Theileria parva strain Muguga	3499944
TpMuguga_03g00483	mRNA	TpMuguga_03g00483	NW_876245.1	1018608	1020732	R	TpMuguga_03g00483	complement(join(<1018608..1018928,1018959..1019096,1019152..1019261,1019351..1019527,1020082..1020373,1020409..1020732))	Theileria parva strain Muguga	3499945
TpMuguga_03g00484	mRNA	TpMuguga_03g00484	NW_876245.1	1020486	1026877	D	TpMuguga_03g00484	join(1020486..1020747,1020869..1020964,1021163..1021260,1021962..1022169,1022274..1022401,1022923..1023067,1023334..1023470,1023527..1024068,1024443..1025718,1025771..1026877)	Theileria parva strain Muguga	3499946
TpMuguga_03g00485	mRNA	TpMuguga_03g00485	NW_876245.1	1027543	1029699	R	TpMuguga_03g00485	complement(<1027543..>1029699)	Theileria parva strain Muguga	3499947
TpMuguga_03g00486	mRNA	TpMuguga_03g00486	NW_876245.1	1030338	1031071	R	TpMuguga_03g00486	complement(join(<1030338..1030340,1030494..1030788,1030989..>1031071))	Theileria parva strain Muguga	3499948
TpMuguga_03g00487	mRNA	TpMuguga_03g00487	NW_876245.1	1031586	1032839	R	TpMuguga_03g00487	complement(join(<1031586..1031731,1031921..1032037,1032335..1032605,1032696..>1032839))	Theileria parva strain Muguga	3499949
TpMuguga_03g00488	mRNA	rpl34	NW_876245.1	1032614	1033676	D	TpMuguga_03g00488	join(1032614..1033280,1033493..1033676)	Theileria parva strain Muguga	3499950
TpMuguga_03g00489	mRNA	Dars	NW_876245.1	1033658	1036752	D	TpMuguga_03g00489	join(1033658..1033858,1034231..1034419,1034595..1034700,1034774..1034853,1034919..1035031,1035062..1035115,1035351..1035839,1036119..1036752)	Theileria parva strain Muguga	3499951
TpMuguga_03g00904	mRNA	TpMuguga_03g00904	NW_876245.1	1037073	1038912	R	TpMuguga_03g00904	complement(join(<1037073..1037306,1037465..1037558,1037616..1037677,1037708..1037755,1037786..1037845,1038192..1038320,1038395..1038672,1038702..1038787,1038851..>1038912))	Theileria parva strain Muguga	3499952
TpMuguga_03g00490	mRNA	CAFP	NW_876245.1	1039041	1044254	R	TpMuguga_03g00490	complement(join(1039041..1039127,1039501..1039660,1040218..1040393,1040508..1040751,1040862..1040930,1041271..1041825,1042056..1042337,1042522..1042980,1043244..1044254))	Theileria parva strain Muguga	3499953
TpMuguga_03g00491	mRNA	PMS1	NW_876245.1	1044313	1047769	D	TpMuguga_03g00491	join(1044313..1044554,1044584..1044670,1044723..1044796,1044827..1044961,1045180..1045475,1045685..1045973,1046040..1046833,1047001..1047088,1047123..1047436,1047535..1047769)	Theileria parva strain Muguga	3499954
TpMuguga_03g00492	mRNA	TpMuguga_03g00492	NW_876245.1	1047911	1053262	D	TpMuguga_03g00492	<1047911..1053262	Theileria parva strain Muguga	3499938
TpMuguga_03g02580	mRNA	UBP12	NW_876245.1	1053415	1059338	R	TpMuguga_03g02580	complement(join(1053415..1055316,1055534..1056895,1057036..1059338))	Theileria parva strain Muguga	3499940
TpMuguga_03g00495	mRNA	TpMuguga_03g00495	NW_876245.1	1059474	1061437	D	TpMuguga_03g00495	join(<1059474..1059606,1059663..1059732,1059881..1061437)	Theileria parva strain Muguga	3499941
TpMuguga_03g00496	mRNA	rsmF	NW_876245.1	1060228	1061325	R	TpMuguga_03g00496	complement(<1060228..>1061325)	Theileria parva strain Muguga	3499942
TpMuguga_03g00497	mRNA	TpMuguga_03g00497	NW_876245.1	1061473	1064334	D	TpMuguga_03g00497	1061473..1064334	Theileria parva strain Muguga	3499943
TpMuguga_03g00498	mRNA	TpMuguga_03g00498	NW_876245.1	1064628	1066886	D	TpMuguga_03g00498	1064628..1066886	Theileria parva strain Muguga	3499914
TpMuguga_03g00499	mRNA	TpMuguga_03g00499	NW_876245.1	1067779	1068348	D	TpMuguga_03g00499	<1067779..>1068348	Theileria parva strain Muguga	3499915
TpMuguga_03g00500	mRNA	rabggtb	NW_876245.1	1068466	1069804	R	TpMuguga_03g00500	complement(join(1068466..1068808,1068838..1068918,1068975..1069219,1069252..1069301,1069332..1069415,1069496..1069804))	Theileria parva strain Muguga	3499916
TpMuguga_03g00501	mRNA	TpMuguga_03g00501	NW_876245.1	1069860	1071338	D	TpMuguga_03g00501	join(1069860..1069989,1070025..1070080,1070128..1070243,1070273..1070435,1070465..1070515,1070546..1070931,1070962..1071023,1071055..1071284,1071317..>1071338)	Theileria parva strain Muguga	3499917
TpMuguga_03g00502	mRNA	der	NW_876245.1	1071483	1073580	D	TpMuguga_03g00502	join(1071483..1071792,1071835..1071878,1071913..1072006,1072041..1072106,1072138..1072269,1072311..1072390,1072419..1072487,1072528..1072640,1072670..1072761,1072792..1072956,1072985..1073107,1073138..1073251,1073324..1073448,1073481..>1073580)	Theileria parva strain Muguga	3499918
TpMuguga_03g00503	mRNA	DPH3	NW_876245.1	1073621	1074199	R	TpMuguga_03g00503	complement(join(1073621..1073776,1073809..1074199))	Theileria parva strain Muguga	3499919
TpMuguga_03g00504	mRNA	TpMuguga_03g00504	NW_876245.1	1074119	1074733	D	TpMuguga_03g00504	<1074119..>1074733	Theileria parva strain Muguga	3499932
TpMuguga_03g00505	mRNA	TpMuguga_03g00505	NW_876245.1	1074766	1075629	R	TpMuguga_03g00505	complement(join(1074766..1075524,1075559..1075629))	Theileria parva strain Muguga	3499933
TpMuguga_03g00506	mRNA	TpMuguga_03g00506	NW_876245.1	1075656	1076781	D	TpMuguga_03g00506	join(1075656..1075835,1075885..1076188,1076228..1076413,1076443..1076491,1076523..1076671,1076701..1076781)	Theileria parva strain Muguga	3499934
TpMuguga_03g00507	mRNA	CCA1	NW_876245.1	1076834	1079036	R	TpMuguga_03g00507	complement(join(1076834..1076995,1077030..1077124,1077151..1077187,1077247..1077358,1077390..1077471,1077521..1077800,1077874..1078439,1078472..1079036))	Theileria parva strain Muguga	3499935
TpMuguga_03g00508	mRNA	TpMuguga_03g00508	NW_876245.1	1078908	1079769	D	TpMuguga_03g00508	join(1078908..1079331,1079371..1079484,1079528..1079593,1079645..1079769)	Theileria parva strain Muguga	3499936
TpMuguga_03g00509	mRNA	TpMuguga_03g00509	NW_876245.1	1079876	1080612	D	TpMuguga_03g00509	join(1079876..1079961,1080000..1080064,1080102..1080612)	Theileria parva strain Muguga	3499937
TpMuguga_03g00510	mRNA	TpMuguga_03g00510	NW_876245.1	1080656	1081927	R	TpMuguga_03g00510	complement(join(1080656..1080712,1080742..1080827,1080857..1081927))	Theileria parva strain Muguga	3499926
TpMuguga_03g00511	mRNA	PRKG1	NW_876245.1	1081978	1085216	R	TpMuguga_03g00511	complement(join(1081978..1082104,1082137..1082214,1082370..1082509,1082542..1082670,1082700..1082838,1082943..1083118,1083213..1083377,1083408..1083510,1083540..1085216))	Theileria parva strain Muguga	3499927
TpMuguga_03g00512	mRNA	ACP5	NW_876245.1	1085433	1086717	R	TpMuguga_03g00512	complement(join(<1085433..1086133,1086204..>1086717))	Theileria parva strain Muguga	3499928
TpMuguga_03g00513	mRNA	TpMuguga_03g00513	NW_876245.1	1086932	1088181	R	TpMuguga_03g00513	complement(join(<1086932..1087335,1087523..1087722,1087753..1087807,1087838..1087987,1088043..>1088181))	Theileria parva strain Muguga	3499929
TpMuguga_03g00514	mRNA	rpl3	NW_876245.1	1088391	1090207	R	TpMuguga_03g00514	complement(join(1088391..1088771,1088868..1089099,1089199..1089337,1089410..1089484,1089549..1089670,1089702..1090207))	Theileria parva strain Muguga	3499930
TpMuguga_03g00515	mRNA	Hnrnpab	NW_876245.1	1090056	1091662	R	TpMuguga_03g00515	complement(join(<1090056..1090207,1090238..1090826,1090856..1090960,1091013..1091210,1091331..1091662))	Theileria parva strain Muguga	3499931
TpMuguga_03g00516	mRNA	lsm-4	NW_876245.1	1091824	1092651	R	TpMuguga_03g00516	complement(join(1091824..1091916,1091967..1092005,1092043..1092154,1092255..1092353,1092413..1092454,1092488..1092651))	Theileria parva strain Muguga	3499920
TpMuguga_03g00517	mRNA	TpMuguga_03g00517	NW_876245.1	1092685	1095726	D	TpMuguga_03g00517	join(1092685..1093563,1093596..1093983,1094044..1094181,1094211..1094359,1094391..1094546,1094598..1094776,1094915..1095135,1095165..1095256,1095287..1095503,1095534..1095726)	Theileria parva strain Muguga	3499921
TpMuguga_03g02365	mRNA	TpMuguga_03g02365	NW_876245.1	1095739	1096881	D	TpMuguga_03g02365	join(1095739..1096701,1096747..>1096881)	Theileria parva strain Muguga	86047774
TpMuguga_03g02480	mRNA	TpMuguga_03g02480	NW_876245.1	1096964	1098674	D	TpMuguga_03g02480	<1096964..1098674	Theileria parva strain Muguga	3499922
TpMuguga_03g00519	mRNA	TERT	NW_876245.1	1098651	1102281	D	TpMuguga_03g00519	join(1098651..1098916,1098947..1099014,1099046..1102281)	Theileria parva strain Muguga	3499923
TpMuguga_03g00520	mRNA	TpMuguga_03g00520	NW_876245.1	1102354	1103232	R	TpMuguga_03g00520	complement(1102354..1103232)	Theileria parva strain Muguga	3499924
TpMuguga_03g00521	mRNA	TpMuguga_03g00521	NW_876245.1	1103273	1104988	R	TpMuguga_03g00521	complement(join(<1103273..1103671,1103826..1103951,1103987..1104168,1104222..1104299,1104385..1104552,1104583..>1104988))	Theileria parva strain Muguga	3499925
TpMuguga_03g00522	mRNA	TpMuguga_03g00522	NW_876245.1	1105083	1105948	R	TpMuguga_03g00522	complement(join(<1105083..1105174,1105226..1105327,1105418..1105948))	Theileria parva strain Muguga	3499908
TpMuguga_03g02210	mRNA	TpMuguga_03g02210	NW_876245.1	1105673	1106561	D	TpMuguga_03g02210	1105673..1106561	Theileria parva strain Muguga	86047760
TpMuguga_03g00523	mRNA	TpMuguga_03g00523	NW_876245.1	1106408	1107438	R	TpMuguga_03g00523	complement(join(<1106408..1106539,1106573..1106680,1106795..1106953,1106996..1107057,1107088..1107146,1107176..1107296,1107327..>1107438))	Theileria parva strain Muguga	3499909
TpMuguga_03g00524	mRNA	TpMuguga_03g00524	NW_876245.1	1107580	1109633	R	TpMuguga_03g00524	complement(join(<1107580..1107754,1107784..1108313,1108343..1108377,1108408..1108467,1108510..1108623,1108652..1108891,1108922..1108970,1109000..1109326,1109358..1109482,1109516..1109633))	Theileria parva strain Muguga	3499910
TpMuguga_03g00525	mRNA	TpMuguga_03g00525	NW_876245.1	1109576	1110346	D	TpMuguga_03g00525	1109576..1110346	Theileria parva strain Muguga	3499911
TpMuguga_03g02585	mRNA	TpMuguga_03g02585	NW_876245.1	1110254	1110825	R	TpMuguga_03g02585	complement(1110254..1110825)	Theileria parva strain Muguga	86047786
TpMuguga_03g02655	mRNA	TpMuguga_03g02655	NW_876245.1	1111404	1113761	D	TpMuguga_03g02655	<1111404..>1113761	Theileria parva strain Muguga	3499912
TpMuguga_03g00527	mRNA	TpMuguga_03g00527	NW_876245.1	1113963	1114633	D	TpMuguga_03g00527	join(<1113963..1114248,1114412..1114530,1114560..1114633)	Theileria parva strain Muguga	3499913
TpMuguga_03g00528	mRNA	RNR1	NW_876245.1	1114688	1117476	R	TpMuguga_03g00528	complement(1114688..1117476)	Theileria parva strain Muguga	3499902
TpMuguga_03g00529	mRNA	TpMuguga_03g00529	NW_876245.1	1118096	1120340	R	TpMuguga_03g00529	complement(join(1118096..1118224,1118255..1118399,1118480..1118731,1118844..1118920,1118950..1119051,1119125..1119533,1119597..1119767,1119832..>1120340))	Theileria parva strain Muguga	3499903
TpMuguga_03g00530	mRNA	CLPR1	NW_876245.1	1120356	1121575	R	TpMuguga_03g00530	complement(join(<1120356..1120406,1120435..1120686,1120811..1120850,1120880..1120966,1120995..1121062,1121093..1121178,1121206..1121575))	Theileria parva strain Muguga	3499904
TpMuguga_03g00531	mRNA	aph1	NW_876245.1	1121632	1123039	R	TpMuguga_03g00531	complement(join(<1121632..1121722,1121879..1122003,1122052..1122165,1122398..1123039))	Theileria parva strain Muguga	3499905
TpMuguga_03g00532	mRNA	ddx46	NW_876245.1	1122876	1127137	D	TpMuguga_03g00532	join(1122876..1124646,1124862..1125995,1126091..1126152,1126182..1126238,1126307..1126599,1127047..>1127137)	Theileria parva strain Muguga	3499906
TpMuguga_03g02225	mRNA	UVR8	NW_876245.1	1127394	1134302	D	TpMuguga_03g02225	join(1127394..1128244,1128341..1128585,1128740..1129006,1129344..1129592,1129688..1129829,1129942..1130193,1130223..1130566,1130875..1131032,1131112..1131202,1131232..1131303,1131332..1131475,1131515..1131814,1132024..1132235,1132283..1132344,1132426..1132692,1132806..1134302)	Theileria parva strain Muguga	3499896
TpMuguga_03g00536	mRNA	TPT	NW_876245.1	1135352	1136835	R	TpMuguga_03g00536	complement(1135352..1136835)	Theileria parva strain Muguga	3499898
TpMuguga_03g00537	mRNA	TpMuguga_03g00537	NW_876245.1	1137321	1139985	D	TpMuguga_03g00537	join(1137321..1137672,1137725..1137799,1137908..1138111,1138630..1139160,1139878..>1139985)	Theileria parva strain Muguga	3499899
TpMuguga_03g00538	mRNA	Ank1	NW_876245.1	1140078	1143915	D	TpMuguga_03g00538	1140078..1143915	Theileria parva strain Muguga	3499900
TpMuguga_03g00539	mRNA	NDB1	NW_876245.1	1144120	1146102	D	TpMuguga_03g00539	join(1144120..1144573,1144648..1146102)	Theileria parva strain Muguga	3499901
TpMuguga_03g00540	mRNA	hus5	NW_876245.1	1147452	1148195	R	TpMuguga_03g00540	complement(join(1147452..1147599,1147629..1147832,1147956..1148195))	Theileria parva strain Muguga	3499861
TpMuguga_03g00541	mRNA	TpMuguga_03g00541	NW_876245.1	1148256	1151318	D	TpMuguga_03g00541	join(1148256..1148886,1148941..1149063,1149092..1149343,1149995..1150602,1150911..1151318)	Theileria parva strain Muguga	3499862
TpMuguga_03g00542	mRNA	TpMuguga_03g00542	NW_876245.1	1151546	1152925	R	TpMuguga_03g00542	complement(join(1151546..1151648,1151676..1151818,1151959..1152146,1152215..1152310,1152339..1152925))	Theileria parva strain Muguga	3499863
TpMuguga_03g00543	mRNA	TpMuguga_03g00543	NW_876245.1	1152953	1157291	D	TpMuguga_03g00543	join(1152953..1153390,1153813..1153935,1153989..1154240,1155678..1156237,1156619..1156894,1156924..1157291)	Theileria parva strain Muguga	3499864
TpMuguga_03g00544	mRNA	TpMuguga_03g00544	NW_876245.1	1157507	1160495	D	TpMuguga_03g00544	join(<1157507..1157612,1158844..1158966,1158996..1159247,1159374..1160074,1160101..1160373,1160404..1160495)	Theileria parva strain Muguga	3499865
TpMuguga_03g00545	mRNA	TpMuguga_03g00545	NW_876245.1	1161660	1164090	D	TpMuguga_03g00545	join(1161660..1161963,1162245..1162364,1162395..1162646,1162707..1163293,1163668..1163934,1163966..1164090)	Theileria parva strain Muguga	3499866
TpMuguga_03g00546	mRNA	TpMuguga_03g00546	NW_876245.1	1164199	1166694	D	TpMuguga_03g00546	join(1164199..1165876,1166125..1166694)	Theileria parva strain Muguga	3499872
TpMuguga_03g00547	mRNA	TpMuguga_03g00547	NW_876245.1	1166806	1167941	D	TpMuguga_03g00547	join(<1166806..1166933,1167047..>1167941)	Theileria parva strain Muguga	3499873
TpMuguga_03g00548	mRNA	TpMuguga_03g00548	NW_876245.1	1168131	1169944	D	TpMuguga_03g00548	join(1168131..1168763,1168925..1169166,1169517..1169582,1169614..1169767,1169797..1169944)	Theileria parva strain Muguga	3499874
TpMuguga_03g00549	mRNA	Lig1	NW_876245.1	1170050	1174077	D	TpMuguga_03g00549	join(<1170050..1170174,1170211..1170314,1170344..1170373,1170404..1170785,1170932..1171093,1171123..1171226,1171385..1171566,1171702..1171806,1171868..1172277,1172474..1172663,1172777..1172996,1173170..1173324,1173465..1173650,1173680..1173787,1173964..>1174077)	Theileria parva strain Muguga	3499875
TpMuguga_03g00550	mRNA	TpMuguga_03g00550	NW_876245.1	1174471	1176187	R	TpMuguga_03g00550	complement(join(1174471..1174543,1174573..1174900,1174966..1175100,1175181..1175256,1175518..1175858,1175925..1176187))	Theileria parva strain Muguga	3499876
TpMuguga_03g00551	mRNA	TpMuguga_03g00551	NW_876245.1	1176259	1177731	R	TpMuguga_03g00551	complement(join(1176259..1176349,1176397..1176702,1176783..1176918,1176950..1177731))	Theileria parva strain Muguga	3500461
TpMuguga_03g00552	mRNA	TpMuguga_03g00552	NW_876245.1	1177378	1179877	D	TpMuguga_03g00552	join(1177378..1178478,1178580..>1179877)	Theileria parva strain Muguga	3500462
TpMuguga_03g00553	mRNA	TpMuguga_03g00553	NW_876245.1	1180020	1183289	D	TpMuguga_03g00553	join(1180020..1182191,1182354..1182443,1182561..1182882,1182915..1183005,1183043..1183289)	Theileria parva strain Muguga	3500463
TpMuguga_03g00554	mRNA	TpMuguga_03g00554	NW_876245.1	1182888	1184004	R	TpMuguga_03g00554	complement(1182888..1184004)	Theileria parva strain Muguga	3500464
TpMuguga_03g02220	mRNA	TpMuguga_03g02220	NW_876245.1	1183991	1184636	R	TpMuguga_03g02220	complement(join(<1183991..1184314,1184422..1184477,1184510..1184636))	Theileria parva strain Muguga	86047762
TpMuguga_03g02230	mRNA	TpMuguga_03g02230	NW_876245.1	1184801	1188840	R	TpMuguga_03g02230	complement(join(1184801..1185730,1185859..1188551,1188581..1188840))	Theileria parva strain Muguga	3500465
TpMuguga_03g02540	mRNA	TpMuguga_03g02540	NW_876245.1	1188984	1192850	D	TpMuguga_03g02540	join(1188984..1189194,1189236..1189404,1189438..1189599,1189657..1189759,1189813..1189958,1190041..1190170,1190200..1190267,1190346..1190439,1190473..1190554,1190585..1190917,1191002..1191926,1192076..1192202,1192317..>1192850)	Theileria parva strain Muguga	3500466
TpMuguga_03g02180	mRNA	TpMuguga_03g02180	NW_876245.1	1192904	1194597	D	TpMuguga_03g02180	join(<1192904..1193137,1193267..1193546,1193752..1193927,1194051..1194130,1194273..1194302,1194332..1194597)	Theileria parva strain Muguga	3499867
TpMuguga_03g00558	mRNA	G6PD	NW_876245.1	1194652	1198453	R	TpMuguga_03g00558	complement(join(1194652..1195938,1196221..1196950,1197061..1197543,1197851..1198453))	Theileria parva strain Muguga	3499868
TpMuguga_03g02345	mRNA	TpMuguga_03g02345	NW_876245.1	1198495	1199477	R	TpMuguga_03g02345	complement(join(1198495..1198768,1198802..1199477))	Theileria parva strain Muguga	86047773
TpMuguga_03g00559	mRNA	TpMuguga_03g00559	NW_876245.1	1199618	1201063	R	TpMuguga_03g00559	complement(join(1199618..1199891,1200060..1200634,1200754..1200821,1200924..1201063))	Theileria parva strain Muguga	3499869
TpMuguga_03g00560	mRNA	cpsf3	NW_876245.1	1201121	1204421	D	TpMuguga_03g00560	join(1201121..1201708,1201889..1202451,1202639..1202729,1202832..1203016,1203163..1203309,1203415..1203849,1203938..1204198,1204318..1204421)	Theileria parva strain Muguga	3499870
TpMuguga_03g00561	mRNA	TpMuguga_03g00561	NW_876245.1	1204599	1206762	D	TpMuguga_03g00561	join(1204599..1204891,1205105..>1206762)	Theileria parva strain Muguga	3499871
TpMuguga_03g02320	mRNA	TpMuguga_03g02320	NW_876245.1	1208251	1209939	D	TpMuguga_03g02320	<1208251..>1209939	Theileria parva strain Muguga	3500381
TpMuguga_03g00563	mRNA	TpMuguga_03g00563	NW_876245.1	1210398	1211933	D	TpMuguga_03g00563	<1210398..>1211933	Theileria parva strain Muguga	3500382
TpMuguga_03g00564	mRNA	TpMuguga_03g00564	NW_876245.1	1212748	1214036	D	TpMuguga_03g00564	join(1212748..1213160,1213350..1213493,1213615..1213641,1213744..1214036)	Theileria parva strain Muguga	3500383
TpMuguga_03g00565	mRNA	RFC1	NW_876245.1	1214258	1218472	D	TpMuguga_03g00565	join(1214258..1215971,1216145..1216414,1216447..1216583,1216768..1217001,1217102..1217230,1217380..1217475,1217505..1217567,1217650..1217732,1217761..1217860,1218097..1218472)	Theileria parva strain Muguga	3500384
TpMuguga_03g02185	mRNA	TpMuguga_03g02185	NW_876245.1	1217558	1218797	R	TpMuguga_03g02185	complement(join(1217558..1217880,1217934..1218004,1218062..1218797))	Theileria parva strain Muguga	86047758
TpMuguga_03g02200	mRNA	TpMuguga_03g02200	NW_876245.1	1218800	1219358	D	TpMuguga_03g02200	1218800..1219358	Theileria parva strain Muguga	86047759
TpMuguga_03g00566	mRNA	RPS30	NW_876245.1	1219530	1220522	R	TpMuguga_03g00566	complement(join(1219530..1219741,1219799..1220522))	Theileria parva strain Muguga	3500385
TpMuguga_03g00567	mRNA	vps45	NW_876245.1	1220030	1222605	D	TpMuguga_03g00567	join(1220030..1222010,1222176..1222312,1222450..>1222605)	Theileria parva strain Muguga	3500386
TpMuguga_03g02660	mRNA	TpMuguga_03g02660	NW_876245.1	1222605	1223260	D	TpMuguga_03g02660	join(<1222605..1222878,1223097..>1223260)	Theileria parva strain Muguga	3499850
TpMuguga_03g00569	mRNA	ATP5A1	NW_876245.1	1223369	1225924	R	TpMuguga_03g00569	complement(join(<1223369..1223826,1224076..1224267,1224415..1224552,1224710..1225218,1225333..1225505,1225709..1225924))	Theileria parva strain Muguga	3499851
TpMuguga_03g00570	mRNA	CSP4	NW_876245.1	1226120	1226766	R	TpMuguga_03g00570	complement(<1226120..1226766)	Theileria parva strain Muguga	3499852
TpMuguga_03g00571	mRNA	TpMuguga_03g00571	NW_876245.1	1226671	1229946	D	TpMuguga_03g00571	join(1226671..1227855,1227988..1228138,1228264..1228468,1228616..1228942,1229092..1229242,1229418..1229946)	Theileria parva strain Muguga	3499853
TpMuguga_03g02500	mRNA	TpMuguga_03g02500	NW_876245.1	1230031	1231882	R	TpMuguga_03g02500	complement(join(<1230031..1230752,1230973..1231882))	Theileria parva strain Muguga	3499854
TpMuguga_03g02385	mRNA	TpMuguga_03g02385	NW_876245.1	1232306	1233234	R	TpMuguga_03g02385	complement(join(1232306..1232394,1232466..1232524,1232556..1232773,1232807..1232868,1232974..1233234))	Theileria parva strain Muguga	86047775
TpMuguga_03g02390	mRNA	smkA	NW_876245.1	1233267	1237451	R	TpMuguga_03g02390	complement(join(<1233267..1233322,1233352..1233447,1233558..1233987,1234333..1235807,1235991..1236222,1236305..1236458,1236602..1236689,1236853..1237003,1237149..1237451))	Theileria parva strain Muguga	3499855
TpMuguga_03g02395	mRNA	Pola2	NW_876245.1	1237780	1240893	R	TpMuguga_03g02395	complement(join(<1237780..1238177,1238356..1238440,1238470..1238549,1238663..1238714,1238883..1238966,1239057..1239139,1239237..1239312,1239462..1239514,1239546..1239609,1239642..1239680,1239771..1239817,1239970..1240045,1240077..1240240,1240445..1240775,1240846..>1240893))	Theileria parva strain Muguga	3499857
TpMuguga_03g00576	mRNA	utp7	NW_876245.1	1241167	1244189	R	TpMuguga_03g00576	complement(join(<1241167..1241352,1241483..1241677,1241822..1241962,1242152..1242363,1242395..1242470,1242688..1242838,1242868..1242938,1242994..1243061,1243093..1243150,1243366..1243495,1243625..1243824,1243865..1244189))	Theileria parva strain Muguga	3499858
TpMuguga_03g00577	mRNA	TpMuguga_03g00577	NW_876245.1	1244106	1245052	D	TpMuguga_03g00577	join(1244106..1244279,1244323..1244851,1244989..>1245052)	Theileria parva strain Muguga	3499859
TpMuguga_03g00578	mRNA	OLA1	NW_876245.1	1245109	1247435	R	TpMuguga_03g00578	complement(join(1245109..1245199,1245227..1245272,1245482..1245556,1245597..1245741,1245886..1246127,1246289..1246526,1246738..1246910,1246944..1246967,1247105..1247223,1247264..1247435))	Theileria parva strain Muguga	3499860
TpMuguga_03g02450	mRNA	TpMuguga_03g02450	NW_876245.1	1247577	1250509	D	TpMuguga_03g02450	join(1247577..1248755,1248954..1249085,1249169..1249557,1249670..1249736,1249768..1249815,1249849..1249909,1249939..1250059,1250112..1250509)	Theileria parva strain Muguga	3499844
TpMuguga_03g00580	mRNA	TpMuguga_03g00580	NW_876245.1	1250629	1252002	R	TpMuguga_03g00580	complement(<1250629..>1252002)	Theileria parva strain Muguga	3499845
TpMuguga_03g00581	mRNA	TpMuguga_03g00581	NW_876245.1	1252067	1253542	R	TpMuguga_03g00581	complement(1252067..1253542)	Theileria parva strain Muguga	3499846
TpMuguga_03g00582	mRNA	TpMuguga_03g00582	NW_876245.1	1253752	1254669	R	TpMuguga_03g00582	complement(<1253752..>1254669)	Theileria parva strain Muguga	3499847
TpMuguga_03g02530	mRNA	TpMuguga_03g02530	NW_876245.1	1254890	1256718	R	TpMuguga_03g02530	complement(join(<1254890..1255030,1255071..1255137,1255166..1255413,1255547..1256053,1256085..1256591,1256635..>1256718))	Theileria parva strain Muguga	3499848
TpMuguga_03g00585	mRNA	TpMuguga_03g00585	NW_876245.1	1256847	1257779	D	TpMuguga_03g00585	join(1256847..1256942,1256981..1257091,1257129..1257282,1257315..1257415,1257446..1257565,1257596..1257651,1257683..1257779)	Theileria parva strain Muguga	3499838
TpMuguga_03g00586	mRNA	TpMuguga_03g00586	NW_876245.1	1257893	1259101	D	TpMuguga_03g00586	<1257893..>1259101	Theileria parva strain Muguga	3499839
TpMuguga_03g00587	mRNA	TpMuguga_03g00587	NW_876245.1	1259212	1261406	D	TpMuguga_03g00587	join(1259212..1259487,1259521..1259593,1259623..1259685,1259759..1259928,1259960..1260097,1260129..1260362,1260424..1260606,1260672..1260729,1260773..1260873,1260904..1261068,1261101..1261308,1261348..1261406)	Theileria parva strain Muguga	3499840
TpMuguga_03g00588	mRNA	TpMuguga_03g00588	NW_876245.1	1261971	1262627	R	TpMuguga_03g00588	complement(join(1261971..1262450,1262529..1262627))	Theileria parva strain Muguga	3499841
TpMuguga_03g02510	mRNA	TpMuguga_03g02510	NW_876245.1	1263361	1276200	R	TpMuguga_03g02510	complement(join(1263361..1263448,1263482..1263904,1264023..1264072,1264105..1264342,1264406..1264775,1264913..1270696,1270782..1272764,1272813..1272917,1272949..1275539,1275602..>1276200))	Theileria parva strain Muguga	3499843
TpMuguga_03g00592	mRNA	TpMuguga_03g00592	NW_876245.1	1276404	1277325	R	TpMuguga_03g00592	complement(join(1276404..1276828,1276905..1276964,1277009..1277325))	Theileria parva strain Muguga	3500448
TpMuguga_03g00593	mRNA	fma2	NW_876245.1	1277938	1279673	R	TpMuguga_03g00593	complement(join(1277938..1278213,1278274..1278479,1278567..1278854,1278923..1279087,1279145..1279303,1279395..1279673))	Theileria parva strain Muguga	3500450
TpMuguga_03g00594	mRNA	COX15	NW_876245.1	1279713	1281225	D	TpMuguga_03g00594	join(1279713..1280008,1280038..1280186,1280272..1280452,1280508..1280601,1280632..1281225)	Theileria parva strain Muguga	3500451
TpMuguga_03g00595	mRNA	TpMuguga_03g00595	NW_876245.1	1281249	1282336	R	TpMuguga_03g00595	complement(1281249..1282336)	Theileria parva strain Muguga	3500452
TpMuguga_03g00596	mRNA	TpMuguga_03g00596	NW_876245.1	1282372	1283078	D	TpMuguga_03g00596	1282372..1283078	Theileria parva strain Muguga	3500453
TpMuguga_03g00597	mRNA	TpMuguga_03g00597	NW_876245.1	1283142	1287837	R	TpMuguga_03g00597	complement(join(<1283142..1283731,1283811..1287275,1287363..>1287837))	Theileria parva strain Muguga	3500441
TpMuguga_03g02635	mRNA	TpMuguga_03g02635	NW_876245.1	1288405	1291455	D	TpMuguga_03g02635	join(1288405..1288835,1288897..1289048,1289089..1289174,1289206..1289283,1289383..1289620,1289689..1290198,1290263..1290331,1290363..1290429,1290477..1290696,1290759..1290902,1290969..1291043,1291075..1291455)	Theileria parva strain Muguga	3500442
TpMuguga_03g00600	mRNA	TpMuguga_03g00600	NW_876245.1	1291486	1291978	D	TpMuguga_03g00600	join(<1291486..1291730,1291819..>1291978)	Theileria parva strain Muguga	3500444
TpMuguga_03g00601	mRNA	CBWD2	NW_876245.1	1292079	1293417	D	TpMuguga_03g00601	join(1292079..1292214,1292320..1292719,1292783..1293161,1293207..1293417)	Theileria parva strain Muguga	3500445
TpMuguga_03g00602	mRNA	TpMuguga_03g00602	NW_876245.1	1293481	1294590	R	TpMuguga_03g00602	complement(join(1293481..1294135,1294283..1294590))	Theileria parva strain Muguga	3500446
TpMuguga_03g00603	mRNA	RPL35AA	NW_876245.1	1295195	1295772	D	TpMuguga_03g00603	join(1295195..1295354,1295482..1295772)	Theileria parva strain Muguga	3500454
TpMuguga_03g00604	mRNA	TpMuguga_03g00604	NW_876245.1	1295818	1296465	R	TpMuguga_03g00604	complement(join(1295818..1295998,1296071..1296158,1296267..1296465))	Theileria parva strain Muguga	3500455
TpMuguga_03g00605	mRNA	TpMuguga_03g00605	NW_876245.1	1296503	1297164	D	TpMuguga_03g00605	join(1296503..1296872,1296936..1297164)	Theileria parva strain Muguga	3500456
TpMuguga_03g00606	mRNA	TpMuguga_03g00606	NW_876245.1	1297413	1298037	D	TpMuguga_03g00606	join(<1297413..1297635,1297769..>1298037)	Theileria parva strain Muguga	3500457
TpMuguga_03g00607	mRNA	TpMuguga_03g00607	NW_876245.1	1298042	1299922	D	TpMuguga_03g00607	join(<1298042..1299655,1299725..>1299922)	Theileria parva strain Muguga	3500458
TpMuguga_03g02630	mRNA	TpMuguga_03g02630	NW_876245.1	1299680	1300408	R	TpMuguga_03g02630	complement(join(1299680..1299985,1300093..1300408))	Theileria parva strain Muguga	86047789
TpMuguga_03g00608	mRNA	TpMuguga_03g00608	NW_876245.1	1300417	1304277	R	TpMuguga_03g00608	complement(join(<1300417..1303292,1303359..1303842,1303954..1304277))	Theileria parva strain Muguga	3500459
TpMuguga_03g00609	mRNA	Icl1e	NW_876245.1	1305228	1306055	D	TpMuguga_03g00609	join(1305228..1305440,1305601..1305755,1305812..1306055)	Theileria parva strain Muguga	3500460
TpMuguga_03g00610	mRNA	TpMuguga_03g00610	NW_876245.1	1306746	1307822	R	TpMuguga_03g00610	complement(1306746..1307822)	Theileria parva strain Muguga	3500387
TpMuguga_03g02340	mRNA	TpMuguga_03g02340	NW_876245.1	1307823	1308078	R	TpMuguga_03g02340	complement(join(1307823..1308000,1308049..>1308078))	Theileria parva strain Muguga	86047772
TpMuguga_03g02335	mRNA	TpMuguga_03g02335	NW_876245.1	1308104	1308598	R	TpMuguga_03g02335	complement(join(<1308104..1308127,1308167..1308357,1308421..1308598))	Theileria parva strain Muguga	3500388
TpMuguga_03g02515	mRNA	hdaC	NW_876245.1	1310487	1316226	R	TpMuguga_03g02515	complement(join(<1310487..1311896,1312081..1312327,1312530..1312659,1312881..1313288,1313320..1313460,1313606..1314517,1314663..>1316226))	Theileria parva strain Muguga	3500389
TpMuguga_03g00614	mRNA	TpMuguga_03g00614	NW_876244.1	1	1249	R	TpMuguga_03g00614	complement(<1..1249)	Theileria parva strain Muguga	3499588
TpMuguga_03g00615	mRNA	TpMuguga_03g00615	NW_876244.1	1449	2900	R	TpMuguga_03g00615	complement(<1449..2900)	Theileria parva strain Muguga	3499589
TpMuguga_03g00616	mRNA	TpMuguga_03g00616	NW_876244.1	3580	5031	R	TpMuguga_03g00616	complement(<3580..5031)	Theileria parva strain Muguga	3499590
TpMuguga_03g00617	mRNA	TpMuguga_03g00617	NW_876244.1	5269	7799	R	TpMuguga_03g00617	complement(5269..>7799)	Theileria parva strain Muguga	3499591
TpMuguga_03g00618	mRNA	TpMuguga_03g00618	NW_876244.1	8461	8793	D	TpMuguga_03g00618	<8461..>8793	Theileria parva strain Muguga	86047743
TpMuguga_03g00619	mRNA	EMG1	NW_876244.1	9164	10229	D	TpMuguga_03g00619	join(9164..9425,9509..10229)	Theileria parva strain Muguga	3499582
TpMuguga_03g00620	mRNA	TpMuguga_03g00620	NW_876244.1	10389	12250	R	TpMuguga_03g00620	complement(join(10389..10501,10534..10655,10833..11175,11322..12250))	Theileria parva strain Muguga	3499583
TpMuguga_03g02165	mRNA	TpMuguga_03g02165	NW_876244.1	12276	12894	R	TpMuguga_03g02165	complement(join(12276..12436,12472..>12894))	Theileria parva strain Muguga	86047756
TpMuguga_03g00621	mRNA	TpMuguga_03g00621	NW_876244.1	13023	14960	R	TpMuguga_03g00621	complement(join(<13023..13314,13436..14960))	Theileria parva strain Muguga	3499584
TpMuguga_03g02005	mRNA	SOH1	NW_876244.1	14962	15434	R	TpMuguga_03g02005	complement(join(<14962..15260,15351..15434))	Theileria parva strain Muguga	86047745
TpMuguga_03g00622	mRNA	UBL5	NW_876244.1	15499	15972	D	TpMuguga_03g00622	join(15499..15570,15651..15756,15842..15972)	Theileria parva strain Muguga	3499585
TpMuguga_03g00623	mRNA	Zdhhc18	NW_876244.1	16584	17471	D	TpMuguga_03g00623	<16584..>17471	Theileria parva strain Muguga	3499586
TpMuguga_03g00624	mRNA	TpMuguga_03g00624	NW_876244.1	17623	18746	R	TpMuguga_03g00624	complement(17623..18746)	Theileria parva strain Muguga	3499587
TpMuguga_03g02080	mRNA	dnaJ	NW_876244.1	18817	21793	D	TpMuguga_03g02080	join(18817..19152,19218..19464,19643..21536,21714..21793)	Theileria parva strain Muguga	3499575
TpMuguga_03g00627	mRNA	TpMuguga_03g00627	NW_876244.1	21806	23838	R	TpMuguga_03g00627	complement(join(<21806..21865,22057..22264,22294..22367,22439..22600,22712..22824,22913..22991,23036..23100,23184..23838))	Theileria parva strain Muguga	3499577
TpMuguga_03g02100	mRNA	rpiA	NW_876244.1	23617	24767	D	TpMuguga_03g02100	join(23617..23786,23827..23988,24077..24256,24332..24580,24655..24767)	Theileria parva strain Muguga	3499578
TpMuguga_03g02120	mRNA	TpMuguga_03g02120	NW_876244.1	24809	25730	D	TpMuguga_03g02120	join(24809..25164,25318..25730)	Theileria parva strain Muguga	86047753
TpMuguga_03g00629	mRNA	UFL1	NW_876244.1	25846	28737	D	TpMuguga_03g00629	join(25846..28409,28685..>28737)	Theileria parva strain Muguga	3499579
TpMuguga_03g02115	mRNA	TpMuguga_03g02115	NW_876244.1	28658	29793	R	TpMuguga_03g02115	complement(join(28658..28762,28794..28832,28894..28977,29011..29055,29085..29131,29254..29317,29360..29432,29469..29524,29611..29655,29698..>29793))	Theileria parva strain Muguga	3499580
TpMuguga_03g02125	mRNA	nadD	NW_876244.1	29840	31067	R	TpMuguga_03g02125	complement(join(<29840..29944,30030..30225,30364..31067))	Theileria parva strain Muguga	3499567
TpMuguga_03g00632	mRNA	TpMuguga_03g00632	NW_876244.1	31651	32067	R	TpMuguga_03g00632	complement(<31651..>32067)	Theileria parva strain Muguga	3499569
TpMuguga_03g00633	mRNA	TpMuguga_03g00633	NW_876244.1	32243	33225	R	TpMuguga_03g00633	complement(32243..>33225)	Theileria parva strain Muguga	3499570
TpMuguga_03g00634	mRNA	TpMuguga_03g00634	NW_876244.1	33399	34193	R	TpMuguga_03g00634	complement(<33399..>34193)	Theileria parva strain Muguga	3499571
TpMuguga_03g00635	mRNA	TpMuguga_03g00635	NW_876244.1	34354	35252	R	TpMuguga_03g00635	complement(join(<34354..35093,35126..>35252))	Theileria parva strain Muguga	3499572
TpMuguga_03g00636	mRNA	TpMuguga_03g00636	NW_876244.1	35405	36252	R	TpMuguga_03g00636	complement(join(<35405..36102,36135..>36252))	Theileria parva strain Muguga	3499573
TpMuguga_03g00637	mRNA	TpMuguga_03g00637	NW_876244.1	36435	36833	R	TpMuguga_03g00637	complement(<36435..>36833)	Theileria parva strain Muguga	3499574
TpMuguga_03g00638	mRNA	TpMuguga_03g00638	NW_876244.1	37486	38214	R	TpMuguga_03g00638	complement(<37486..>38214)	Theileria parva strain Muguga	3499560
TpMuguga_03g00639	mRNA	TpMuguga_03g00639	NW_876244.1	38578	39465	R	TpMuguga_03g00639	complement(<38578..>39465)	Theileria parva strain Muguga	3499561
TpMuguga_03g00640	mRNA	TpMuguga_03g00640	NW_876244.1	39976	42370	D	TpMuguga_03g00640	join(39976..40249,40290..40356,40442..40559,40641..40728,40759..40991,41024..41190,41259..41405,41470..41641,41712..41928,41988..42165,42237..42370)	Theileria parva strain Muguga	3499562
TpMuguga_03g00641	mRNA	TpMuguga_03g00641	NW_876244.1	42395	43578	R	TpMuguga_03g00641	complement(join(<42395..42615,42647..42721,42751..43578))	Theileria parva strain Muguga	3499563
TpMuguga_03g00642	mRNA	TpMuguga_03g00642	NW_876244.1	43540	44483	D	TpMuguga_03g00642	43540..44483	Theileria parva strain Muguga	3499564
TpMuguga_03g00643	mRNA	TpMuguga_03g00643	NW_876244.1	44522	45377	D	TpMuguga_03g00643	join(<44522..44569,44609..44753,44794..44905,45066..45180,45273..>45377)	Theileria parva strain Muguga	3499565
TpMuguga_03g00644	mRNA	chl1	NW_876244.1	45034	48293	R	TpMuguga_03g00644	complement(join(45034..45350,45387..45684,45890..46087,46117..46338,46371..46523,46554..46574,46633..47578,47608..47810,47891..47949,47991..48109,48145..48293))	Theileria parva strain Muguga	3499566
TpMuguga_03g02055	mRNA	leng8	NW_876244.1	48362	51991	D	TpMuguga_03g02055	join(48362..48730,48766..49251,49281..49855,49886..49953,49988..50423,50517..50618,50651..50917,51142..51214,51245..51575,51779..51859,51892..>51991)	Theileria parva strain Muguga	3499556
TpMuguga_03g00647	mRNA	TpMuguga_03g00647	NW_876244.1	52190	54226	R	TpMuguga_03g00647	complement(52190..>54226)	Theileria parva strain Muguga	3499557
TpMuguga_03g00648	mRNA	TpMuguga_03g00648	NW_876244.1	54692	55193	R	TpMuguga_03g00648	complement(54692..55193)	Theileria parva strain Muguga	3499558
TpMuguga_03g00649	mRNA	TpMuguga_03g00649	NW_876244.1	55349	59169	D	TpMuguga_03g00649	<55349..59169	Theileria parva strain Muguga	3499559
TpMuguga_03g00650	mRNA	rbm8a	NW_876244.1	59218	59858	D	TpMuguga_03g00650	join(59218..59364,59434..59625,59662..59858)	Theileria parva strain Muguga	3499550
TpMuguga_03g00651	mRNA	Spt6	NW_876244.1	60105	66932	D	TpMuguga_03g00651	join(60105..61018,61187..61540,61597..65638,65687..66006,66354..>66932)	Theileria parva strain Muguga	3499551
TpMuguga_03g00652	mRNA	TpMuguga_03g00652	NW_876244.1	66971	69142	D	TpMuguga_03g00652	join(66971..68135,68462..69142)	Theileria parva strain Muguga	3499552
TpMuguga_03g00653	mRNA	TpMuguga_03g00653	NW_876244.1	68461	69167	R	TpMuguga_03g00653	complement(join(68461..68713,68758..69167))	Theileria parva strain Muguga	3499553
TpMuguga_03g00654	mRNA	TpMuguga_03g00654	NW_876244.1	69243	75220	D	TpMuguga_03g00654	join(69243..69823,69854..69949,70025..70112,70144..70268,70319..70513,70654..70740,70770..70913,71411..71579,71610..71772,71802..72033,72066..72359,72387..72476,72526..72715,72987..73082,73116..73316,73374..73482,73730..73890,73933..74071,74123..74189,74220..74285,74539..74735,75002..75049,75079..75220)	Theileria parva strain Muguga	3499554
TpMuguga_03g02075	mRNA	TpMuguga_03g02075	NW_876244.1	75322	76145	D	TpMuguga_03g02075	join(<75322..75449,75570..75617,76022..>76145)	Theileria parva strain Muguga	86047751
TpMuguga_03g00655	mRNA	TpMuguga_03g00655	NW_876244.1	76301	77776	D	TpMuguga_03g00655	join(76301..76686,77161..77351,77588..77776)	Theileria parva strain Muguga	3499831
TpMuguga_03g00656	mRNA	TpMuguga_03g00656	NW_876244.1	77853	79675	D	TpMuguga_03g00656	join(77853..78075,78106..78147,78177..78257,78343..78472,78673..78795,79126..79292,79415..79675)	Theileria parva strain Muguga	3499832
TpMuguga_03g00657	mRNA	TpMuguga_03g00657	NW_876244.1	80442	83691	R	TpMuguga_03g00657	complement(80442..>83691)	Theileria parva strain Muguga	3499833
TpMuguga_03g00658	mRNA	TpMuguga_03g00658	NW_876244.1	84240	84758	R	TpMuguga_03g00658	complement(join(<84240..84430,84452..>84758))	Theileria parva strain Muguga	3499834
TpMuguga_03g00659	mRNA	TpMuguga_03g00659	NW_876244.1	84915	87054	D	TpMuguga_03g00659	84915..87054	Theileria parva strain Muguga	3499835
TpMuguga_03g00660	mRNA	TpMuguga_03g00660	NW_876244.1	87329	89482	D	TpMuguga_03g00660	<87329..>89482	Theileria parva strain Muguga	3499836
TpMuguga_03g02140	mRNA	TpMuguga_03g02140	NW_876244.1	90119	93904	R	TpMuguga_03g02140	complement(join(90119..90382,90410..90496,90562..90656,90687..90759,90789..90824,90874..91265,91360..91450,91479..91582,91694..91757,91785..91937,92185..92409,92653..92784,92850..93012,93042..93112,93164..93317,93346..93437,93468..93586,93641..93904))	Theileria parva strain Muguga	3499592
TpMuguga_03g00663	mRNA	TpMuguga_03g00663	NW_876244.1	94009	99483	D	TpMuguga_03g00663	join(94009..94880,95149..95244,95275..99022,99162..99263,99331..99483)	Theileria parva strain Muguga	3499593
TpMuguga_03g00664	mRNA	TpMuguga_03g00664	NW_876244.1	100154	101326	R	TpMuguga_03g00664	complement(<100154..>101326)	Theileria parva strain Muguga	3499594
TpMuguga_03g00665	mRNA	RER1	NW_876244.1	103531	104396	R	TpMuguga_03g00665	complement(join(103531..103632,103667..104396))	Theileria parva strain Muguga	3499595
TpMuguga_03g00666	mRNA	Rab7a	NW_876244.1	104479	106384	R	TpMuguga_03g00666	complement(join(104479..104732,105589..105875,105904..105962,106197..106264,106301..106384))	Theileria parva strain Muguga	3499596
TpMuguga_03g00667	mRNA	DDX60	NW_876244.1	106763	114002	R	TpMuguga_03g00667	complement(106763..114002)	Theileria parva strain Muguga	3499597
TpMuguga_03g02030	mRNA	vps13F	NW_876244.1	115032	126940	D	TpMuguga_03g02030	join(<115032..120683,120735..126549,126581..126662,126808..>126940)	Theileria parva strain Muguga	3499600
TpMuguga_03g00671	mRNA	TpMuguga_03g00671	NW_876244.1	127091	127535	D	TpMuguga_03g00671	join(127091..127218,127260..127357,127417..>127535)	Theileria parva strain Muguga	3499601
TpMuguga_03g00672	mRNA	AIFM3	NW_876244.1	127550	130041	R	TpMuguga_03g00672	complement(join(127550..127807,127838..127931,127978..128113,128144..128208,128238..128396,128428..128540,128609..128692,128726..128860,128890..129119,129148..129268,129299..129384,129449..129526,129557..129646,129680..129772,129813..130041))	Theileria parva strain Muguga	3499602
TpMuguga_03g00673	mRNA	TpMuguga_03g00673	NW_876244.1	130079	130890	D	TpMuguga_03g00673	join(130079..130306,130342..130418,130453..130589,130620..>130890)	Theileria parva strain Muguga	3499603
TpMuguga_03g00674	mRNA	ispH	NW_876244.1	131006	132311	R	TpMuguga_03g00674	complement(join(131006..131116,131148..131688,131718..131940,131989..132158,132198..132311))	Theileria parva strain Muguga	3499604
TpMuguga_03g00675	mRNA	UBP25	NW_876244.1	132312	136211	R	TpMuguga_03g00675	complement(join(132312..136054,136137..136211))	Theileria parva strain Muguga	3499605
TpMuguga_03g00676	mRNA	TpMuguga_03g00676	NW_876244.1	136980	138492	D	TpMuguga_03g00676	join(<136980..138121,138239..138338,138397..>138492)	Theileria parva strain Muguga	3499606
TpMuguga_03g00677	mRNA	Rcc1	NW_876244.1	138542	140576	R	TpMuguga_03g00677	complement(join(138542..140320,140387..140576))	Theileria parva strain Muguga	3499607
TpMuguga_03g00678	mRNA	TpMuguga_03g00678	NW_876244.1	140869	142147	R	TpMuguga_03g00678	complement(join(140869..141089,141127..142147))	Theileria parva strain Muguga	3499608
TpMuguga_03g00679	mRNA	TpMuguga_03g00679	NW_876244.1	142130	143173	R	TpMuguga_03g00679	complement(join(142130..142261,142301..142793,142852..143173))	Theileria parva strain Muguga	3499609
TpMuguga_03g00680	mRNA	TpMuguga_03g00680	NW_876244.1	143823	144551	D	TpMuguga_03g00680	join(<143823..143933,144117..>144551)	Theileria parva strain Muguga	3499610
TpMuguga_03g00681	mRNA	TpMuguga_03g00681	NW_876244.1	144651	145922	D	TpMuguga_03g00681	join(<144651..144869,144899..145366,145488..>145922)	Theileria parva strain Muguga	3499611
TpMuguga_03g00682	mRNA	TpMuguga_03g00682	NW_876244.1	146007	147800	D	TpMuguga_03g00682	join(146007..146897,146928..147353,147384..147800)	Theileria parva strain Muguga	3499612
TpMuguga_03g00683	mRNA	Rpl23a	NW_876244.1	147868	148691	D	TpMuguga_03g00683	join(147868..148093,148155..148260,148302..148547,148589..148691)	Theileria parva strain Muguga	3499613
TpMuguga_03g00684	mRNA	naa40	NW_876244.1	148709	149629	R	TpMuguga_03g00684	complement(join(<148709..148912,148943..149040,149070..149629))	Theileria parva strain Muguga	3499614
TpMuguga_03g02105	mRNA	TpMuguga_03g02105	NW_876244.1	149607	150197	D	TpMuguga_03g02105	join(149607..149791,149845..149945,150032..150197)	Theileria parva strain Muguga	3499616
TpMuguga_03g02020	mRNA	VPS52	NW_876244.1	150248	152904	D	TpMuguga_03g02020	join(150248..151146,151178..151371,151403..152359,152389..152557,152646..152750,152782..152904)	Theileria parva strain Muguga	3499618
TpMuguga_03g00689	mRNA	TpMuguga_03g00689	NW_876244.1	152931	154435	R	TpMuguga_03g00689	complement(join(152931..153528,153558..153949,154155..154219,154328..154435))	Theileria parva strain Muguga	3499619
TpMuguga_03g00690	mRNA	TpMuguga_03g00690	NW_876244.1	154505	155833	D	TpMuguga_03g00690	join(154505..155004,155036..155363,155397..155560,155611..155673,155713..155833)	Theileria parva strain Muguga	3499620
TpMuguga_03g00691	mRNA	RBM39	NW_876244.1	155922	158250	D	TpMuguga_03g00691	join(155922..157710,157800..158250)	Theileria parva strain Muguga	3499621
TpMuguga_03g00692	mRNA	top3	NW_876244.1	158237	161109	D	TpMuguga_03g00692	join(158237..158385,158415..158506,158539..158612,158646..158715,158753..158813,158847..158916,158947..159005,159038..159074,159108..159177,159208..159315,159344..159394,159424..159484,159532..159574,159667..159879,159947..160147,160220..160292,160331..160397,160443..160505,160561..160611,160728..160799,160864..>161109)	Theileria parva strain Muguga	3499622
TpMuguga_03g00693	mRNA	TpMuguga_03g00693	NW_876244.1	161178	163750	R	TpMuguga_03g00693	complement(join(161178..161575,161650..161731,161773..162090,162322..162429,162493..162668,162735..162825,162910..163446,163496..>163750))	Theileria parva strain Muguga	3499623
TpMuguga_03g02015	mRNA	TpMuguga_03g02015	NW_876244.1	163759	164812	R	TpMuguga_03g02015	complement(join(<163759..163828,163876..164068,164122..>164812))	Theileria parva strain Muguga	86047746
TpMuguga_03g00694	mRNA	TpMuguga_03g00694	NW_876244.1	164996	166193	R	TpMuguga_03g00694	complement(join(164996..165320,165403..165502,165532..165581,165611..165727,165805..166013,166055..166193))	Theileria parva strain Muguga	3499624
TpMuguga_03g00695	mRNA	ITPA	NW_876244.1	166261	167261	R	TpMuguga_03g00695	complement(join(166261..166341,166380..166604,166669..166729,166819..166957,166991..167261))	Theileria parva strain Muguga	3499625
TpMuguga_03g00696	mRNA	TpMuguga_03g00696	NW_876244.1	167351	172552	R	TpMuguga_03g00696	complement(<167351..>172552)	Theileria parva strain Muguga	3499626
TpMuguga_03g00697	mRNA	TpMuguga_03g00697	NW_876244.1	172827	173824	R	TpMuguga_03g00697	complement(172827..173824)	Theileria parva strain Muguga	3499627
TpMuguga_03g02065	mRNA	TpMuguga_03g02065	NW_876244.1	174193	174672	R	TpMuguga_03g02065	complement(join(174193..174396,174472..174566,174604..174672))	Theileria parva strain Muguga	86047749
TpMuguga_03g00698	mRNA	tuf	NW_876244.1	174728	176291	R	TpMuguga_03g00698	complement(join(174728..174926,175024..176291))	Theileria parva strain Muguga	3499628
TpMuguga_03g00699	mRNA	TpMuguga_03g00699	NW_876244.1	176348	178469	R	TpMuguga_03g00699	complement(join(176348..176505,176539..176605,176638..176897,176927..177036,177076..177192,177235..177373,177430..177526,177556..177590,177621..177681,177711..177746,177777..177846,177896..178000,178094..178169,178214..178469))	Theileria parva strain Muguga	3499629
TpMuguga_03g00700	mRNA	TpMuguga_03g00700	NW_876244.1	178494	179488	R	TpMuguga_03g00700	complement(join(178494..178612,178644..178835,178866..179139,179173..179488))	Theileria parva strain Muguga	3499630
TpMuguga_03g02045	mRNA	TpMuguga_03g02045	NW_876244.1	179531	180463	D	TpMuguga_03g02045	join(179531..179744,179799..179836,179872..180080,180111..180463)	Theileria parva strain Muguga	86047748
TpMuguga_03g00701	mRNA	CRK3	NW_876244.1	180217	182355	R	TpMuguga_03g00701	complement(join(180217..180313,180362..180444,180539..180651,180716..180838,180915..>182355))	Theileria parva strain Muguga	3499631
TpMuguga_03g00702	mRNA	TpMuguga_03g00702	NW_876244.1	182620	185056	D	TpMuguga_03g00702	join(182620..182775,182883..184184,184268..184931,184990..185056)	Theileria parva strain Muguga	3499632
TpMuguga_03g00703	mRNA	atad3-a	NW_876244.1	185173	187923	R	TpMuguga_03g00703	complement(join(185173..185334,185384..185674,185763..185979,186061..186263,186296..186352,186429..186503,186558..186681,186726..186864,186955..187061,187135..187262,187323..187459,187552..187923))	Theileria parva strain Muguga	3499633
TpMuguga_03g00704	mRNA	mak16	NW_876244.1	188010	189042	D	TpMuguga_03g00704	join(188010..188268,188300..188409,188477..189042)	Theileria parva strain Muguga	3499634
TpMuguga_03g00705	mRNA	TpMuguga_03g00705	NW_876244.1	189055	190950	R	TpMuguga_03g00705	complement(join(189055..189202,189297..190483,190527..>190950))	Theileria parva strain Muguga	3499635
TpMuguga_03g02050	mRNA	SMYD5	NW_876244.1	191067	192833	R	TpMuguga_03g02050	complement(join(<191067..191141,191185..191283,191314..191428,191459..191501,191537..191567,191599..191712,191767..191884,191913..191960,191991..192087,192117..192154,192183..192259,192291..192365,192399..192462,192506..192583,192617..192833))	Theileria parva strain Muguga	3499637
TpMuguga_03g00709	mRNA	TpMuguga_03g00709	NW_876244.1	192889	194699	D	TpMuguga_03g00709	join(192889..193159,193192..193272,193305..193384,193417..193518,193548..193684,193720..193830,193860..193915,193946..194001,194033..194119,194151..194363,194394..194699)	Theileria parva strain Muguga	3499639
TpMuguga_03g00710	mRNA	RPS17	NW_876244.1	194838	195569	D	TpMuguga_03g00710	join(194838..195045,195078..195142,195182..195278,195312..195569)	Theileria parva strain Muguga	3499640
TpMuguga_03g00711	mRNA	TpMuguga_03g00711	NW_876244.1	195919	198301	D	TpMuguga_03g00711	195919..198301	Theileria parva strain Muguga	3499641
TpMuguga_03g00712	mRNA	Fnta	NW_876244.1	197986	199271	R	TpMuguga_03g00712	complement(join(197986..198144,198173..198273,198303..198592,198623..198738,198772..198815,198848..199018,199073..>199271))	Theileria parva strain Muguga	3499642
TpMuguga_03g00713	mRNA	TpMuguga_03g00713	NW_876244.1	199277	200187	R	TpMuguga_03g00713	complement(join(<199277..199587,199627..200004,200070..>200187))	Theileria parva strain Muguga	3499643
TpMuguga_03g00714	mRNA	ssr2	NW_876244.1	200278	202338	R	TpMuguga_03g00714	complement(join(200278..200365,200400..200767,200799..201344,201374..201653,201685..201797,201828..201950,202010..202190,202263..202338))	Theileria parva strain Muguga	3499644
TpMuguga_03g00715	mRNA	Gdi2	NW_876244.1	202339	204399	R	TpMuguga_03g00715	complement(join(202339..202449,202483..202528,202561..202628,202663..202760,202792..202893,203000..203860,203893..203985,204032..204092,204149..204399))	Theileria parva strain Muguga	3499645
TpMuguga_03g00716	mRNA	RPS19A	NW_876244.1	204805	205503	D	TpMuguga_03g00716	join(204805..204873,204972..205503)	Theileria parva strain Muguga	3499646
TpMuguga_03g00717	mRNA	RPS12	NW_876244.1	205636	206380	R	TpMuguga_03g00717	complement(205636..206380)	Theileria parva strain Muguga	3499647
TpMuguga_03g00718	mRNA	TpMuguga_03g00718	NW_876244.1	206602	208334	R	TpMuguga_03g00718	complement(206602..208334)	Theileria parva strain Muguga	3499648
TpMuguga_03g02060	mRNA	TpMuguga_03g02060	NW_876244.1	208677	209737	D	TpMuguga_03g02060	join(208677..209282,209314..209737)	Theileria parva strain Muguga	3499649
TpMuguga_03g02095	mRNA	TpMuguga_03g02095	NW_876244.1	209802	210963	D	TpMuguga_03g02095	join(209802..209941,209998..210202,210288..210688,210834..210963)	Theileria parva strain Muguga	86047752
TpMuguga_03g00720	mRNA	TpMuguga_03g00720	NW_876244.1	211267	213088	D	TpMuguga_03g00720	join(<211267..212943,213038..>213088)	Theileria parva strain Muguga	3499650
TpMuguga_03g00721	mRNA	TpMuguga_03g00721	NW_876244.1	213856	217401	D	TpMuguga_03g00721	<213856..>217401	Theileria parva strain Muguga	3499651
TpMuguga_03g00722	mRNA	TpMuguga_03g00722	NW_876244.1	217523	219274	R	TpMuguga_03g00722	complement(217523..219274)	Theileria parva strain Muguga	3499652
TpMuguga_03g00723	mRNA	cct-2	NW_876244.1	220004	221954	D	TpMuguga_03g00723	220004..221954	Theileria parva strain Muguga	3499653
TpMuguga_03g00724	mRNA	ict1	NW_876244.1	222005	222794	R	TpMuguga_03g00724	complement(join(222005..222097,222128..222193,222223..222293,222326..222381,222457..222533,222600..>222794))	Theileria parva strain Muguga	3499654
TpMuguga_03g00725	mRNA	TpMuguga_03g00725	NW_876244.1	222891	223812	R	TpMuguga_03g00725	complement(222891..>223812)	Theileria parva strain Muguga	3499655
TpMuguga_03g00726	mRNA	TpMuguga_03g00726	NW_876244.1	224139	224680	R	TpMuguga_03g00726	complement(224139..224680)	Theileria parva strain Muguga	3499656
TpMuguga_03g00727	mRNA	TpMuguga_03g00727	NW_876244.1	224839	225610	R	TpMuguga_03g00727	complement(224839..225610)	Theileria parva strain Muguga	3499657
TpMuguga_03g00728	mRNA	TpMuguga_03g00728	NW_876244.1	225588	227769	R	TpMuguga_03g00728	complement(join(225588..225794,225965..226119,226180..226896,226953..227006,227038..227769))	Theileria parva strain Muguga	3499658
TpMuguga_03g00729	mRNA	TpMuguga_03g00729	NW_876244.1	228059	230433	D	TpMuguga_03g00729	228059..230433	Theileria parva strain Muguga	3499659
TpMuguga_03g00730	mRNA	GPD2	NW_876244.1	230749	233140	D	TpMuguga_03g00730	join(230749..231023,231101..231436,231500..232118,232196..232443,232517..233140)	Theileria parva strain Muguga	3499660
TpMuguga_03g00731	mRNA	TpMuguga_03g00731	NW_876244.1	233201	234148	R	TpMuguga_03g00731	complement(233201..234148)	Theileria parva strain Muguga	3499661
TpMuguga_03g00732	mRNA	LSM7	NW_876244.1	234190	234914	D	TpMuguga_03g00732	join(234190..234315,234410..234481,234522..234592,234714..234914)	Theileria parva strain Muguga	3499662
TpMuguga_03g00733	mRNA	ZNF718	NW_876244.1	234680	235891	R	TpMuguga_03g00733	complement(join(234680..234907,234940..235047,235078..235116,235148..235212,235243..235380,235411..235597,235661..235891))	Theileria parva strain Muguga	3499663
TpMuguga_03g00734	mRNA	Ciao1	NW_876244.1	235885	237597	D	TpMuguga_03g00734	join(235885..236168,236207..236401,236436..236619,236649..236745,236777..236892,236924..237064,237094..237176,237207..237269,237300..237597)	Theileria parva strain Muguga	3499664
TpMuguga_03g00735	mRNA	MPC2	NW_876244.1	237598	238308	D	TpMuguga_03g00735	join(237598..237742,237861..237983,238024..238098,238202..238308)	Theileria parva strain Muguga	3499665
TpMuguga_03g00736	mRNA	TpMuguga_03g00736	NW_876244.1	238290	238810	D	TpMuguga_03g00736	join(238290..238444,238501..238810)	Theileria parva strain Muguga	3499666
TpMuguga_03g00737	mRNA	TpMuguga_03g00737	NW_876244.1	238909	241854	D	TpMuguga_03g00737	<238909..241854	Theileria parva strain Muguga	3499667
TpMuguga_03g02155	mRNA	TpMuguga_03g02155	NW_876244.1	242253	244672	D	TpMuguga_03g02155	join(<242253..244232,244299..244451,244496..>244672)	Theileria parva strain Muguga	3499669
TpMuguga_03g00740	mRNA	TpMuguga_03g00740	NW_876244.1	244742	246837	D	TpMuguga_03g00740	244742..246837	Theileria parva strain Muguga	3499670
TpMuguga_03g00741	mRNA	TpMuguga_03g00741	NW_876244.1	247220	249229	R	TpMuguga_03g00741	complement(join(247220..247408,247439..247980,248031..249229))	Theileria parva strain Muguga	3499671
TpMuguga_03g00742	mRNA	TpMuguga_03g00742	NW_876244.1	249461	250581	D	TpMuguga_03g00742	join(249461..249688,249730..249842,249908..250166,250196..250280,250311..250581)	Theileria parva strain Muguga	3499672
TpMuguga_03g00743	mRNA	EB1C	NW_876244.1	250657	251733	R	TpMuguga_03g00743	complement(250657..251733)	Theileria parva strain Muguga	3499673
TpMuguga_03g00744	mRNA	rpl7	NW_876244.1	251792	253095	R	TpMuguga_03g00744	complement(join(251792..251870,251998..252228,252288..252771,252839..252891,253053..253095))	Theileria parva strain Muguga	3499674
TpMuguga_03g00745	mRNA	RpS23	NW_876244.1	253381	254393	R	TpMuguga_03g00745	complement(join(253381..253653,253932..254110,254247..254393))	Theileria parva strain Muguga	3499675
TpMuguga_03g00746	mRNA	rpc2	NW_876244.1	254675	258674	R	TpMuguga_03g00746	complement(join(254675..255107,255187..256356,256419..256955,257043..258674))	Theileria parva strain Muguga	3499676
TpMuguga_03g00747	mRNA	SNRNP200	NW_876244.1	259147	266309	D	TpMuguga_03g00747	join(<259147..259191,259297..259497,259547..265366,265455..265692,265764..265972,266033..266309)	Theileria parva strain Muguga	3499677
TpMuguga_03g00748	mRNA	TpMuguga_03g00748	NW_876244.1	267371	269576	D	TpMuguga_03g00748	join(<267371..269508,269534..>269576)	Theileria parva strain Muguga	3499678
TpMuguga_03g00749	mRNA	TpMuguga_03g00749	NW_876244.1	269687	272761	D	TpMuguga_03g00749	<269687..>272761	Theileria parva strain Muguga	3499679
TpMuguga_03g02035	mRNA	TpMuguga_03g02035	NW_876244.1	272828	279087	R	TpMuguga_03g02035	complement(join(272828..273714,273785..273987,274112..>279087))	Theileria parva strain Muguga	3499680
TpMuguga_03g00752	mRNA	TpMuguga_03g00752	NW_876244.1	279840	280258	R	TpMuguga_03g00752	complement(join(<279840..279935,280193..>280258))	Theileria parva strain Muguga	3499682
TpMuguga_03g00753	mRNA	TpMuguga_03g00753	NW_876244.1	280665	282226	D	TpMuguga_03g00753	280665..282226	Theileria parva strain Muguga	3499683
TpMuguga_03g00754	mRNA	TpMuguga_03g00754	NW_876244.1	282321	285257	R	TpMuguga_03g00754	complement(join(282321..282490,282632..282803,282943..285257))	Theileria parva strain Muguga	3499684
TpMuguga_03g00755	mRNA	RPL15	NW_876244.1	285370	286183	D	TpMuguga_03g00755	join(285370..285465,285556..286183)	Theileria parva strain Muguga	3499685
TpMuguga_03g00756	mRNA	Copz2	NW_876244.1	286275	287244	D	TpMuguga_03g00756	join(286275..286496,286594..286668,286729..286885,286943..287020,287052..287139,287170..287244)	Theileria parva strain Muguga	3499686
TpMuguga_03g00757	mRNA	TpMuguga_03g00757	NW_876244.1	287230	288182	D	TpMuguga_03g00757	join(287230..287344,287432..287639,287717..287803,287862..287969,288009..288182)	Theileria parva strain Muguga	3499687
TpMuguga_03g00758	mRNA	mqo	NW_876244.1	288213	289961	D	TpMuguga_03g00758	join(288213..288295,288333..288476,288524..288613,288643..288748,288822..288945,288979..289961)	Theileria parva strain Muguga	3499688
TpMuguga_03g02145	mRNA	TpMuguga_03g02145	NW_876244.1	290012	292367	R	TpMuguga_03g02145	complement(join(290012..290502,290534..290668,290715..292367))	Theileria parva strain Muguga	3499689
TpMuguga_03g00761	mRNA	TpMuguga_03g00761	NW_876244.1	292508	293800	D	TpMuguga_03g00761	join(292508..292756,292795..293064,293129..293209,293241..293484,293563..293800)	Theileria parva strain Muguga	3499691
TpMuguga_03g00762	mRNA	snf12-2	NW_876244.1	293876	295486	R	TpMuguga_03g00762	complement(join(293876..294042,294072..294161,294264..295486))	Theileria parva strain Muguga	3499692
TpMuguga_03g00763	mRNA	TpMuguga_03g00763	NW_876244.1	295618	303169	R	TpMuguga_03g00763	complement(295618..303169)	Theileria parva strain Muguga	3499693
TpMuguga_03g00764	mRNA	TpMuguga_03g00764	NW_876244.1	303447	304865	R	TpMuguga_03g00764	complement(join(303447..303628,303662..303757,303794..303862,303895..304010,304041..304129,304197..304286,304321..304865))	Theileria parva strain Muguga	3499694
TpMuguga_03g00765	mRNA	slc39a1	NW_876244.1	304957	306474	D	TpMuguga_03g00765	join(304957..305385,305514..305684,305721..305990,306051..306474)	Theileria parva strain Muguga	3499695
TpMuguga_03g00766	mRNA	TpMuguga_03g00766	NW_876244.1	306577	307729	R	TpMuguga_03g00766	complement(join(306577..306820,306973..307110,307216..307359,307484..307729))	Theileria parva strain Muguga	3499696
TpMuguga_03g00767	mRNA	TpMuguga_03g00767	NW_876244.1	316281	317917	D	TpMuguga_03g00767	join(<316281..316435,316507..316570,316603..316737,316768..316814,316861..316953,317023..317170,317203..317309,317369..317542,317611..>317917)	Theileria parva strain Muguga	3499700
TpMuguga_03g00768	mRNA	TpMuguga_03g00768	NW_876244.1	318018	319467	R	TpMuguga_03g00768	complement(join(<318018..318255,318310..318369,318410..318535,318568..318650,318706..318765,318802..318960,319020..319088,319185..319298,319336..>319467))	Theileria parva strain Muguga	3499701
TpMuguga_03g00769	mRNA	TpMuguga_03g00769	NW_876244.1	319555	320059	D	TpMuguga_03g00769	join(319555..319648,319688..319744,319776..319986,320017..320059)	Theileria parva strain Muguga	3499702
TpMuguga_03g00770	mRNA	TpMuguga_03g00770	NW_876244.1	320121	321722	R	TpMuguga_03g00770	complement(320121..321722)	Theileria parva strain Muguga	3499703
TpMuguga_03g02085	mRNA	TpMuguga_03g02085	NW_876244.1	321758	323986	D	TpMuguga_03g02085	join(<321758..321863,321893..322088,322122..322187,322221..322368,322409..322759,322830..322991,323020..323126,323156..323204,323235..323260,323342..323454,323485..323593,323632..323835,323870..323986)	Theileria parva strain Muguga	3499704
TpMuguga_03g00773	mRNA	purB	NW_876244.1	324092	325871	D	TpMuguga_03g00773	join(<324092..324278,324311..324417,324541..324723,324754..324876,324910..325014,325048..325184,325215..325556,325646..>325871)	Theileria parva strain Muguga	3499706
TpMuguga_03g00774	mRNA	TpMuguga_03g00774	NW_876244.1	325909	326958	R	TpMuguga_03g00774	complement(join(325909..326014,326044..326207,326284..326339,326370..326471,326557..326745,326777..326860,326895..326958))	Theileria parva strain Muguga	3499707
TpMuguga_03g00775	mRNA	rab1	NW_876244.1	326991	327852	R	TpMuguga_03g00775	complement(join(326991..327190,327225..327381,327449..327591,327632..327727,327748..>327852))	Theileria parva strain Muguga	3499708
TpMuguga_03g00776	mRNA	TpMuguga_03g00776	NW_876244.1	327945	329367	D	TpMuguga_03g00776	join(327945..328198,328234..328294,328327..328455,328485..328569,328625..328811,328840..328891,328943..329010,329041..329124,329158..329237,329278..329367)	Theileria parva strain Muguga	3499709
TpMuguga_03g00777	mRNA	TpMuguga_03g00777	NW_876244.1	329404	330525	D	TpMuguga_03g00777	join(<329404..329723,329761..329861,329897..329964,329998..330081,330121..330188,330220..330260,330290..330324,330355..330394,330427..330525)	Theileria parva strain Muguga	3499710
TpMuguga_03g00778	mRNA	TpMuguga_03g00778	NW_876244.1	330561	331753	R	TpMuguga_03g00778	complement(join(330561..330646,330680..330734,330765..330907,330961..331023,331053..331089,331121..331210,331242..331303,331422..331526,331571..331753))	Theileria parva strain Muguga	3499711
TpMuguga_03g00779	mRNA	TpMuguga_03g00779	NW_876244.1	331756	332867	R	TpMuguga_03g00779	complement(join(331756..332496,332532..332867))	Theileria parva strain Muguga	3499712
TpMuguga_03g00780	mRNA	TpMuguga_03g00780	NW_876244.1	333180	333808	D	TpMuguga_03g00780	join(<333180..333359,333398..333471,333541..333592,333634..333678,333713..333737,333777..>333808)	Theileria parva strain Muguga	3499713
TpMuguga_03g00781	mRNA	TpMuguga_03g00781	NW_876244.1	334051	335113	D	TpMuguga_03g00781	join(<334051..334137,334221..334406,334515..334538,334569..334761,334833..335002,335034..335113)	Theileria parva strain Muguga	3499714
TpMuguga_03g00782	mRNA	ESF1	NW_876244.1	335221	337044	D	TpMuguga_03g00782	join(335221..335427,335461..335561,335597..335797,335830..335860,335912..335966,335996..336271,336301..336412,336445..336617,336649..336742,336773..336844,336876..336956,336991..>337044)	Theileria parva strain Muguga	3499715
TpMuguga_03g02010	mRNA	TpMuguga_03g02010	NW_876244.1	337083	338861	D	TpMuguga_03g02010	join(337083..337166,337199..337237,337279..337473,337504..337594,337631..337725,337756..337839,337873..338861)	Theileria parva strain Muguga	3499716
TpMuguga_03g00785	mRNA	TpMuguga_03g00785	NW_876244.1	339405	344795	D	TpMuguga_03g00785	<339405..>344795	Theileria parva strain Muguga	3499718
TpMuguga_03g00786	mRNA	Pnpla8	NW_876244.1	344938	348405	R	TpMuguga_03g00786	complement(<344938..>348405)	Theileria parva strain Muguga	3499719
TpMuguga_03g00787	mRNA	TIF3D1	NW_876244.1	348562	350594	R	TpMuguga_03g00787	complement(join(348562..350000,350114..350325,350388..350594))	Theileria parva strain Muguga	3499720
TpMuguga_03g00788	mRNA	Hdac4	NW_876244.1	350719	353487	R	TpMuguga_03g00788	complement(350719..353487)	Theileria parva strain Muguga	3499721
TpMuguga_03g00789	mRNA	POP1	NW_876244.1	353539	356555	R	TpMuguga_03g00789	complement(join(353539..353601,353647..353733,353813..353893,353924..354400,354432..354637,354728..354865,354910..355526,355557..355651,355684..356140,356227..356555))	Theileria parva strain Muguga	3499722
TpMuguga_03g00790	mRNA	RH39	NW_876244.1	356738	361970	D	TpMuguga_03g00790	join(<356738..356830,356865..>361970)	Theileria parva strain Muguga	3499723
TpMuguga_03g00791	mRNA	TpMuguga_03g00791	NW_876244.1	362114	363126	R	TpMuguga_03g00791	complement(join(362114..362546,362643..362845,362970..363126))	Theileria parva strain Muguga	3499724
TpMuguga_03g00792	mRNA	TpMuguga_03g00792	NW_876244.1	363160	363942	D	TpMuguga_03g00792	join(<363160..363205,363240..363304,363344..363487,363520..363603,363637..363694,363760..363942)	Theileria parva strain Muguga	3499725
TpMuguga_03g00793	mRNA	adat2	NW_876244.1	363739	364852	R	TpMuguga_03g00793	complement(join(363739..364012,364043..364140,364193..364268,364348..364516,364549..364659,364689..364852))	Theileria parva strain Muguga	3499726
TpMuguga_03g00794	mRNA	TpMuguga_03g00794	NW_876244.1	364853	367528	R	TpMuguga_03g00794	complement(join(364853..364932,365000..366369,366399..367528))	Theileria parva strain Muguga	3499727
TpMuguga_03g00795	mRNA	obg	NW_876244.1	367430	369131	D	TpMuguga_03g00795	join(367430..367666,367780..367983,368048..368203,368244..368302,368332..368380,368412..368489,368538..368619,368654..368807,368839..368950,368982..369048,369080..369131)	Theileria parva strain Muguga	3499728
TpMuguga_03g02160	mRNA	TpMuguga_03g02160	NW_876244.1	369149	373898	R	TpMuguga_03g02160	complement(join(369149..370154,370284..373336,373373..373477,373698..373898))	Theileria parva strain Muguga	3499729
TpMuguga_03g00798	mRNA	TpMuguga_03g00798	NW_876244.1	372774	374350	D	TpMuguga_03g00798	join(372774..373006,373054..373201,373261..373457,373537..373724,373783..>374350)	Theileria parva strain Muguga	3499731
TpMuguga_03g02040	mRNA	TpMuguga_03g02040	NW_876244.1	374553	376599	D	TpMuguga_03g02040	join(374553..374569,374603..374772,374815..375247,375290..375705,375746..375897,375926..376049,376079..376166,376198..376277,376307..376382,376413..376599)	Theileria parva strain Muguga	3499732
TpMuguga_03g00801	mRNA	TpMuguga_03g00801	NW_876244.1	376729	378026	D	TpMuguga_03g00801	join(376729..376774,376825..377024,377072..377283,377316..377500,377553..377924,377955..378026)	Theileria parva strain Muguga	3499734
TpMuguga_03g00802	mRNA	coq2	NW_876244.1	377994	379549	D	TpMuguga_03g00802	join(377994..378577,378632..378698,378733..378847,378881..379035,379082..379169,379247..379549)	Theileria parva strain Muguga	3499735
TpMuguga_03g02025	mRNA	TpMuguga_03g02025	NW_876244.1	379410	380588	R	TpMuguga_03g02025	complement(join(379410..379501,379608..380588))	Theileria parva strain Muguga	86047747
TpMuguga_03g00803	mRNA	TpMuguga_03g00803	NW_876244.1	379637	380503	D	TpMuguga_03g00803	379637..380503	Theileria parva strain Muguga	3499736
TpMuguga_03g00804	mRNA	Sec11c	NW_876244.1	380645	381318	D	TpMuguga_03g00804	join(380645..380817,380897..381318)	Theileria parva strain Muguga	3499737
TpMuguga_03g00805	mRNA	TpMuguga_03g00805	NW_876244.1	381336	382947	R	TpMuguga_03g00805	complement(join(381336..381477,381507..381710,381795..382076,382144..382227,382261..382390,382422..382451,382497..382576,382609..382645,382678..382713,382747..382806,382891..>382947))	Theileria parva strain Muguga	3499738
TpMuguga_03g00806	mRNA	TpMuguga_03g00806	NW_876244.1	383005	383443	R	TpMuguga_03g00806	complement(join(383005..383047,383080..383146,383219..383297,383331..>383443))	Theileria parva strain Muguga	3499739
TpMuguga_03g00807	mRNA	TpMuguga_03g00807	NW_876244.1	383532	383866	D	TpMuguga_03g00807	383532..383866	Theileria parva strain Muguga	3499740
TpMuguga_03g00808	mRNA	samm50	NW_876244.1	383890	385920	R	TpMuguga_03g00808	complement(join(383890..384071,384102..384157,384228..384354,384394..384550,384598..384681,384715..384829,384860..384918,384950..385114,385167..385259,385323..385475,385556..385644,385683..385920))	Theileria parva strain Muguga	3499741
TpMuguga_03g00809	mRNA	PAB2	NW_876244.1	385897	386987	R	TpMuguga_03g00809	complement(join(385897..386206,386301..386434,386499..386680,386789..386987))	Theileria parva strain Muguga	3499742
TpMuguga_03g00810	mRNA	TpMuguga_03g00810	NW_876244.1	387021	388233	R	TpMuguga_03g00810	complement(join(<387021..387391,387423..387595,387652..387854,387903..388093,388125..>388233))	Theileria parva strain Muguga	3499743
TpMuguga_03g00811	mRNA	TpMuguga_03g00811	NW_876244.1	388458	391266	D	TpMuguga_03g00811	388458..391266	Theileria parva strain Muguga	3499744
TpMuguga_03g00812	mRNA	TpMuguga_03g00812	NW_876244.1	390610	391202	R	TpMuguga_03g00812	complement(join(390610..390731,390761..391053,391111..>391202))	Theileria parva strain Muguga	3499745
TpMuguga_03g02110	mRNA	TpMuguga_03g02110	NW_876244.1	391628	395135	R	TpMuguga_03g02110	complement(join(391628..391930,392007..392090,392144..392216,392260..392348,392378..392488,392546..392602,392631..392702,392812..392968,393028..393074,393105..393307,393337..393414,393479..393559,393593..393659,393715..393802,393861..393990,394115..394429,394461..394516,394546..394607,394644..394912,394968..395135))	Theileria parva strain Muguga	3499746
TpMuguga_03g00816	mRNA	fusA1	NW_876244.1	395245	398530	R	TpMuguga_03g00816	complement(join(395245..395384,395473..395877,396004..396245,396439..396789,397113..398530))	Theileria parva strain Muguga	3499749
TpMuguga_03g00817	mRNA	TpMuguga_03g00817	NW_876244.1	398501	400608	R	TpMuguga_03g00817	complement(join(398501..398814,399007..399558,399925..400608))	Theileria parva strain Muguga	3499750
TpMuguga_03g00818	mRNA	TpMuguga_03g00818	NW_876244.1	400573	401410	D	TpMuguga_03g00818	join(400573..400977,401062..401211,401306..401410)	Theileria parva strain Muguga	3499751
TpMuguga_03g00819	mRNA	TpMuguga_03g00819	NW_876244.1	401443	402630	D	TpMuguga_03g00819	join(401443..401619,401687..401812,402383..402487,402581..>402630)	Theileria parva strain Muguga	3499752
TpMuguga_03g00820	mRNA	TpMuguga_03g00820	NW_876244.1	402734	403533	D	TpMuguga_03g00820	<402734..403533	Theileria parva strain Muguga	3499753
TpMuguga_03g00821	mRNA	nsa2	NW_876244.1	403544	405374	D	TpMuguga_03g00821	join(403544..403673,403805..403924,404022..404127,404176..404244,404276..404333,404630..404708,404832..404974,405216..405374)	Theileria parva strain Muguga	3499754
TpMuguga_03g02090	mRNA	TpMuguga_03g02090	NW_876244.1	405612	408650	D	TpMuguga_03g02090	join(<405612..407581,408384..408650)	Theileria parva strain Muguga	3499755
TpMuguga_03g02070	mRNA	TpMuguga_03g02070	NW_876244.1	408783	409534	D	TpMuguga_03g02070	408783..409534	Theileria parva strain Muguga	86047750
TpMuguga_03g00823	mRNA	TpMuguga_03g00823	NW_876244.1	410498	413422	R	TpMuguga_03g00823	complement(join(<410498..410636,410761..410833,410891..410938,410969..411036,411089..411315,411642..411792,411949..412105,412285..412504,412656..412724,412938..413200,413332..>413422))	Theileria parva strain Muguga	3499756
TpMuguga_03g00824	mRNA	TpMuguga_03g00824	NW_876244.1	413629	415453	D	TpMuguga_03g00824	join(413629..414564,414610..414972,415292..415453)	Theileria parva strain Muguga	3499757
TpMuguga_03g00825	mRNA	TpMuguga_03g00825	NW_876244.1	415534	418198	D	TpMuguga_03g00825	join(<415534..415587,415838..417115,417337..417673,417749..418198)	Theileria parva strain Muguga	3499758
TpMuguga_03g00826	mRNA	fcp1	NW_876244.1	418941	421696	R	TpMuguga_03g00826	complement(join(<418941..421262,421517..421696))	Theileria parva strain Muguga	3499759
TpMuguga_03g00827	mRNA	TpMuguga_03g00827	NW_876244.1	422212	425321	D	TpMuguga_03g00827	join(422212..422482,422515..423025,423219..425321)	Theileria parva strain Muguga	3499760
TpMuguga_03g00828	mRNA	Supt5h	NW_876244.1	425520	429686	D	TpMuguga_03g00828	join(425520..425823,425999..426111,426757..426884,426990..427304,427640..429686)	Theileria parva strain Muguga	3499761
TpMuguga_03g00829	mRNA	TpMuguga_03g00829	NW_876244.1	430441	431737	R	TpMuguga_03g00829	complement(430441..>431737)	Theileria parva strain Muguga	3499762
TpMuguga_03g00830	mRNA	DBP2	NW_876244.1	432106	435987	R	TpMuguga_03g00830	complement(join(432106..432296,432820..433193,433651..434162,434635..434937,435303..>435987))	Theileria parva strain Muguga	3499763
TpMuguga_03g00831	mRNA	coq10b	NW_876244.1	436222	436898	R	TpMuguga_03g00831	complement(join(<436222..436455,436539..436694,436740..>436898))	Theileria parva strain Muguga	3499764
TpMuguga_03g00832	mRNA	TpMuguga_03g00832	NW_876244.1	437728	438513	D	TpMuguga_03g00832	join(<437728..437831,437878..437955,438300..438513)	Theileria parva strain Muguga	3499766
TpMuguga_03g00833	mRNA	TpMuguga_03g00833	NW_876244.1	438296	439509	R	TpMuguga_03g00833	complement(join(438296..438390,438423..438517,438606..438657,439154..>439509))	Theileria parva strain Muguga	3499768
TpMuguga_03g00834	mRNA	TpMuguga_03g00834	NW_876244.1	439595	442310	D	TpMuguga_03g00834	439595..442310	Theileria parva strain Muguga	3499769
TpMuguga_03g00835	mRNA	TpMuguga_03g00835	NW_876244.1	442651	443703	R	TpMuguga_03g00835	complement(<442651..>443703)	Theileria parva strain Muguga	3499770
TpMuguga_03g00836	mRNA	TpMuguga_03g00836	NW_876244.1	444235	445166	R	TpMuguga_03g00836	complement(join(444235..444500,444569..444620,444694..>445166))	Theileria parva strain Muguga	3499771
TpMuguga_03g00837	mRNA	TpMuguga_03g00837	NW_876244.1	445288	445521	R	TpMuguga_03g00837	complement(<445288..>445521)	Theileria parva strain Muguga	3499772
TpMuguga_03g00838	mRNA	TpMuguga_03g00838	NW_876244.1	445687	450701	D	TpMuguga_03g00838	join(445687..446354,446500..446610,446960..447187,447291..447620,447739..447770,447800..448087,448147..448383,448599..448869,449071..449325,449446..449771,449812..449868,449910..>450701)	Theileria parva strain Muguga	3499773
TpMuguga_03g00839	mRNA	TpMuguga_03g00839	NW_876244.1	450755	451537	R	TpMuguga_03g00839	complement(<450755..>451537)	Theileria parva strain Muguga	3499774
TpMuguga_03g00840	mRNA	TpMuguga_03g00840	NW_876244.1	451873	454974	R	TpMuguga_03g00840	complement(join(<451873..452004,452254..452979,453621..453720,454016..454543,454715..454974))	Theileria parva strain Muguga	3499775
TpMuguga_03g00841	mRNA	sae1	NW_876244.1	455020	456983	R	TpMuguga_03g00841	complement(join(455020..455149,455201..455265,455296..455435,455575..455647,455678..455781,455964..456143,456254..456345,456395..456471,456523..456983))	Theileria parva strain Muguga	3499776
TpMuguga_03g02000	mRNA	TpMuguga_03g02000	NW_876244.1	456944	457499	D	TpMuguga_03g02000	join(456944..457081,457194..457253,457350..457499)	Theileria parva strain Muguga	86047744
TpMuguga_03g00842	mRNA	ksg1	NW_876244.1	457407	459339	R	TpMuguga_03g00842	complement(join(<457407..458295,458538..458689,458913..459032,459094..459339))	Theileria parva strain Muguga	3499777
TpMuguga_03g00843	mRNA	TpMuguga_03g00843	NW_876244.1	459340	460554	R	TpMuguga_03g00843	complement(join(459340..459388,459451..459532,459637..459760,459791..459907,460158..460219,460249..460554))	Theileria parva strain Muguga	3499778
TpMuguga_03g00844	mRNA	TpMuguga_03g00844	NW_876244.1	460587	461319	R	TpMuguga_03g00844	complement(join(460587..460727,460763..460825,460943..460984,461015..461073,461103..461319))	Theileria parva strain Muguga	3499779
TpMuguga_03g02130	mRNA	NFYB	NW_876244.1	461964	463661	D	TpMuguga_03g02130	join(461964..462250,462506..463061,463136..463265,463488..>463661)	Theileria parva strain Muguga	3499780
TpMuguga_03g02135	mRNA	TpMuguga_03g02135	NW_876244.1	463750	464584	D	TpMuguga_03g02135	join(<463750..463767,463842..463929,463987..464029,464060..464188,464250..464383,464414..464584)	Theileria parva strain Muguga	86047754
TpMuguga_03g00846	mRNA	PIGK	NW_876244.1	464561	466313	D	TpMuguga_03g00846	join(464561..465127,465159..465359,465478..466313)	Theileria parva strain Muguga	3499781
TpMuguga_03g00847	mRNA	TpMuguga_03g00847	NW_876244.1	466431	468740	D	TpMuguga_03g00847	join(466431..466775,466889..467272,467318..467388,467423..467481,467511..467579,467609..467790,467820..467904,467934..468360,468415..>468740)	Theileria parva strain Muguga	3499782
TpMuguga_03g00848	mRNA	mrp	NW_876244.1	468836	470751	D	TpMuguga_03g00848	join(<468836..469210,469240..469427,469458..469817,469847..470039,470122..470751)	Theileria parva strain Muguga	3499783
TpMuguga_03g00849	mRNA	TpMuguga_03g00849	NW_876244.1	471162	472983	D	TpMuguga_03g00849	471162..472983	Theileria parva strain Muguga	3499784
TpMuguga_03g00850	mRNA	TpMuguga_03g00850	NW_876244.1	473234	474427	R	TpMuguga_03g00850	complement(<473234..>474427)	Theileria parva strain Muguga	3499785
TpMuguga_03g00851	mRNA	TpMuguga_03g00851	NW_876244.1	474891	476145	R	TpMuguga_03g00851	complement(join(474891..474978,475061..475243,475276..475371,475406..475504,475535..475681,475713..475778,475811..476145))	Theileria parva strain Muguga	3499786
TpMuguga_03g02150	mRNA	TpMuguga_03g02150	NW_876244.1	476258	476981	D	TpMuguga_03g02150	join(476258..476355,476394..476546,476580..476666,476698..476816,476848..>476981)	Theileria parva strain Muguga	86047755
TpMuguga_03g00852	mRNA	sec61a	NW_876244.1	477056	479103	R	TpMuguga_03g00852	complement(join(477056..477250,477476..478364,478506..478785,478824..478891,479013..479103))	Theileria parva strain Muguga	3499787
TpMuguga_03g00853	mRNA	VATE	NW_876244.1	479133	479947	D	TpMuguga_03g00853	join(479133..479194,479258..479947)	Theileria parva strain Muguga	3499788
TpMuguga_03g00854	mRNA	TpMuguga_03g00854	NW_876244.1	479943	480672	R	TpMuguga_03g00854	complement(join(479943..480202,480232..480389,480432..480523,480574..480672))	Theileria parva strain Muguga	3499789
TpMuguga_03g00855	mRNA	TpMuguga_03g00855	NW_876244.1	480796	481507	R	TpMuguga_03g00855	complement(join(480796..481068,481157..481507))	Theileria parva strain Muguga	3499790
TpMuguga_03g00856	mRNA	TpMuguga_03g00856	NW_876244.1	481684	483267	R	TpMuguga_03g00856	complement(<481684..>483267)	Theileria parva strain Muguga	3499791
TpMuguga_03g00857	mRNA	FPS1	NW_876244.1	483922	485874	D	TpMuguga_03g00857	join(483922..484283,484313..484411,484450..484537,484628..484699,484757..484974,485004..485089,485119..485217,485249..485409,485440..485465,485496..485874)	Theileria parva strain Muguga	3499793
TpMuguga_03g00858	mRNA	MBF1C	NW_876244.1	485409	486243	R	TpMuguga_03g00858	complement(join(485409..485668,485703..485871,485951..485996,486029..486243))	Theileria parva strain Muguga	3499794
TpMuguga_03g00859	mRNA	TpMuguga_03g00859	NW_876244.1	486244	487482	R	TpMuguga_03g00859	complement(join(486244..486299,486338..486390,486464..486632,486691..486796,486832..486887,486917..486956,487012..487194,487229..487306,487343..487482))	Theileria parva strain Muguga	3499795
TpMuguga_03g00929	mRNA	TpMuguga_03g00929	NW_876244.1	487568	488601	R	TpMuguga_03g00929	complement(join(<487568..487945,488052..488161,488203..488601))	Theileria parva strain Muguga	3499796
TpMuguga_03g00860	mRNA	RPS5B	NW_876244.1	488679	489783	D	TpMuguga_03g00860	join(488679..489021,489109..489245,489360..489593,489625..489783)	Theileria parva strain Muguga	3499797
TpMuguga_03g00861	mRNA	TpMuguga_03g00861	NW_876244.1	489869	494617	R	TpMuguga_03g00861	complement(489869..494617)	Theileria parva strain Muguga	3499798
TpMuguga_03g00862	mRNA	TpMuguga_03g00862	NW_876244.1	494838	499178	R	TpMuguga_03g00862	complement(<494838..>499178)	Theileria parva strain Muguga	3499799
TpMuguga_03g00863	mRNA	TpMuguga_03g00863	NW_876244.1	501371	507265	D	TpMuguga_03g00863	<501371..>507265	Theileria parva strain Muguga	3499800
TpMuguga_03g00864	mRNA	abcC6	NW_876244.1	508046	512701	R	TpMuguga_03g00864	complement(508046..>512701)	Theileria parva strain Muguga	3499801
TpMuguga_03g00865	mRNA	TpMuguga_03g00865	NW_876244.1	514470	516812	D	TpMuguga_03g00865	<514470..>516812	Theileria parva strain Muguga	3499802
TpMuguga_03g00866	mRNA	TpMuguga_03g00866	NW_876244.1	517131	518347	D	TpMuguga_03g00866	517131..518347	Theileria parva strain Muguga	3499803
TpMuguga_03g00867	mRNA	TpMuguga_03g00867	NW_876244.1	518570	520203	D	TpMuguga_03g00867	518570..520203	Theileria parva strain Muguga	3499804
TpMuguga_03g00868	mRNA	TpMuguga_03g00868	NW_876244.1	520323	522095	D	TpMuguga_03g00868	join(520323..520416,520515..522095)	Theileria parva strain Muguga	3499805
TpMuguga_03g00869	mRNA	TpMuguga_03g00869	NW_876244.1	522172	523588	D	TpMuguga_03g00869	join(522172..522266,522304..522836,522939..523588)	Theileria parva strain Muguga	3499806
TpMuguga_03g00870	mRNA	TpMuguga_03g00870	NW_876244.1	523847	525538	D	TpMuguga_03g00870	<523847..>525538	Theileria parva strain Muguga	3499807
TpMuguga_03g00871	mRNA	TpMuguga_03g00871	NW_876244.1	525762	527750	D	TpMuguga_03g00871	<525762..>527750	Theileria parva strain Muguga	3499808
TpMuguga_03g00872	mRNA	TpMuguga_03g00872	NW_876244.1	527987	529492	D	TpMuguga_03g00872	join(<527987..529223,529248..529297,529484..>529492)	Theileria parva strain Muguga	3499809
TpMuguga_03g00873	mRNA	TpMuguga_03g00873	NW_876244.1	529656	531188	D	TpMuguga_03g00873	<529656..>531188	Theileria parva strain Muguga	3499810
TpMuguga_03g00874	mRNA	TpMuguga_03g00874	NW_876244.1	531420	533370	D	TpMuguga_03g00874	<531420..533370	Theileria parva strain Muguga	3499811
TpMuguga_03g00875	mRNA	TpMuguga_03g00875	NW_876244.1	533596	535486	D	TpMuguga_03g00875	join(<533596..534600,534632..534854,535185..>535486)	Theileria parva strain Muguga	3499812
TpMuguga_03g00876	mRNA	TpMuguga_03g00876	NW_876244.1	535708	536220	D	TpMuguga_03g00876	join(<535708..536150,536217..>536220)	Theileria parva strain Muguga	3499813
TpMuguga_03g00877	mRNA	TpMuguga_03g00877	NW_876244.1	536425	537890	D	TpMuguga_03g00877	join(<536425..536947,537388..>537890)	Theileria parva strain Muguga	3499814
TpMuguga_03g00878	mRNA	TpMuguga_03g00878	NW_876244.1	538115	539644	D	TpMuguga_03g00878	<538115..>539644	Theileria parva strain Muguga	3499815
TpMuguga_03g00879	mRNA	TpMuguga_03g00879	NW_876244.1	539876	541930	D	TpMuguga_03g00879	<539876..541930	Theileria parva strain Muguga	3499816
TpMuguga_03g00880	mRNA	TpMuguga_03g00880	NW_876244.1	542052	543942	D	TpMuguga_03g00880	join(<542052..543056,543088..543517,543548..>543942)	Theileria parva strain Muguga	3499817
TpMuguga_03g00881	mRNA	TpMuguga_03g00881	NW_876244.1	544163	545934	D	TpMuguga_03g00881	<544163..545934	Theileria parva strain Muguga	3499818
TpMuguga_03g00882	mRNA	TpMuguga_03g00882	NW_876244.1	546102	547925	D	TpMuguga_03g00882	<546102..>547925	Theileria parva strain Muguga	3499819
TpMuguga_03g00883	mRNA	TpMuguga_03g00883	NW_876244.1	548146	549821	D	TpMuguga_03g00883	<548146..549821	Theileria parva strain Muguga	3499820
TpMuguga_03g00884	mRNA	TpMuguga_03g00884	NW_876244.1	549979	551967	D	TpMuguga_03g00884	<549979..>551967	Theileria parva strain Muguga	3499821
TpMuguga_03g00885	mRNA	TpMuguga_03g00885	NW_876244.1	552204	553649	D	TpMuguga_03g00885	<552204..>553649	Theileria parva strain Muguga	3499822
TpMuguga_03g00886	mRNA	TpMuguga_03g00886	NW_876244.1	553842	555325	D	TpMuguga_03g00886	<553842..555325	Theileria parva strain Muguga	3499823
TpMuguga_03g00887	mRNA	TpMuguga_03g00887	NW_876244.1	555560	557094	D	TpMuguga_03g00887	555560..557094	Theileria parva strain Muguga	3499824
TpMuguga_03g00888	mRNA	TpMuguga_03g00888	NW_876244.1	557132	558587	D	TpMuguga_03g00888	557132..558587	Theileria parva strain Muguga	3499825
TpMuguga_03g00889	mRNA	TpMuguga_03g00889	NW_876244.1	558841	560115	D	TpMuguga_03g00889	<558841..>560115	Theileria parva strain Muguga	3499826
TpMuguga_03g00890	mRNA	TpMuguga_03g00890	NW_876244.1	560419	561898	D	TpMuguga_03g00890	join(<560419..560843,560980..>561898)	Theileria parva strain Muguga	3499827
TpMuguga_03g00891	mRNA	TpMuguga_03g00891	NW_876244.1	562140	562642	D	TpMuguga_03g00891	join(<562140..562547,562589..>562642)	Theileria parva strain Muguga	3499828
TpMuguga_03g00892	mRNA	TpMuguga_03g00892	NW_876244.1	563675	565549	D	TpMuguga_03g00892	563675..>565549	Theileria parva strain Muguga	3499829
TpMuguga_03g00930	mRNA	TpMuguga_03g00930	NW_876244.1	566094	567725	D	TpMuguga_03g00930	<566094..567725	Theileria parva strain Muguga	3499830
TpMuguga_03g00905	mRNA	TpMuguga_03g00905	NW_876243.1	1	580	D	TpMuguga_03g00905	1..>580	Theileria parva strain Muguga	3499532
TpMuguga_03g00906	mRNA	TpMuguga_03g00906	NW_876243.1	978	2564	D	TpMuguga_03g00906	978..2564	Theileria parva strain Muguga	3499533
TpMuguga_03g00907	mRNA	TpMuguga_03g00907	NW_876243.1	2627	4636	D	TpMuguga_03g00907	2627..>4636	Theileria parva strain Muguga	3499534
TpMuguga_03g00908	mRNA	TpMuguga_03g00908	NW_876243.1	6084	7559	D	TpMuguga_03g00908	6084..>7559	Theileria parva strain Muguga	3499535
TpMuguga_03g00909	mRNA	TpMuguga_03g00909	NW_876243.1	7809	9215	D	TpMuguga_03g00909	7809..>9215	Theileria parva strain Muguga	3499536
TpMuguga_03g00910	mRNA	TpMuguga_03g00910	NW_876243.1	10314	11789	D	TpMuguga_03g00910	10314..>11789	Theileria parva strain Muguga	3499537
TpMuguga_03g00911	mRNA	TpMuguga_03g00911	NW_876243.1	12064	13710	D	TpMuguga_03g00911	12064..>13710	Theileria parva strain Muguga	3499538
TpMuguga_03g00912	mRNA	TpMuguga_03g00912	NW_876243.1	14355	16361	D	TpMuguga_03g00912	<14355..>16361	Theileria parva strain Muguga	3499539
TpMuguga_03g00913	mRNA	TpMuguga_03g00913	NW_876243.1	16636	18273	D	TpMuguga_03g00913	16636..>18273	Theileria parva strain Muguga	3499540
TpMuguga_03g00914	mRNA	TpMuguga_03g00914	NW_876243.1	19803	21242	D	TpMuguga_03g00914	19803..>21242	Theileria parva strain Muguga	3499541
TpMuguga_03g00915	mRNA	TpMuguga_03g00915	NW_876243.1	21792	23840	D	TpMuguga_03g00915	<21792..>23840	Theileria parva strain Muguga	3499542
TpMuguga_03g00916	mRNA	TpMuguga_03g00916	NW_876243.1	23982	26195	D	TpMuguga_03g00916	<23982..>26195	Theileria parva strain Muguga	3499543
TpMuguga_03g00917	mRNA	TpMuguga_03g00917	NW_876243.1	26463	27935	D	TpMuguga_03g00917	26463..>27935	Theileria parva strain Muguga	3499544
TpMuguga_03g00918	mRNA	TpMuguga_03g00918	NW_876243.1	29398	31215	R	TpMuguga_03g00918	complement(<29398..>31215)	Theileria parva strain Muguga	3499545
TpMuguga_03g00919	mRNA	TpMuguga_03g00919	NW_876243.1	32514	34523	R	TpMuguga_03g00919	complement(<32514..34523)	Theileria parva strain Muguga	3499546
TpMuguga_03g00920	mRNA	TpMuguga_03g00920	NW_876243.1	34586	36723	R	TpMuguga_03g00920	complement(34586..>36723)	Theileria parva strain Muguga	3499547
TpMuguga_03g00921	mRNA	TpMuguga_03g00921	NW_876243.1	37368	38837	R	TpMuguga_03g00921	complement(<37368..38837)	Theileria parva strain Muguga	3499548
TpMuguga_03g00922	mRNA	TpMuguga_03g00922	NW_876243.1	40325	41584	R	TpMuguga_03g00922	complement(40325..41584)	Theileria parva strain Muguga	3499549
TpMuguga_03g00923	mRNA	TpMuguga_03g00923	NW_876242.1	425	1831	R	TpMuguga_03g00923	complement(<425..1831)	Theileria parva strain Muguga	3499527
TpMuguga_03g00924	mRNA	TpMuguga_03g00924	NW_876242.1	2081	4105	R	TpMuguga_03g00924	complement(<2081..4105)	Theileria parva strain Muguga	3499528
TpMuguga_03g00925	mRNA	TpMuguga_03g00925	NW_876242.1	4168	6323	R	TpMuguga_03g00925	complement(4168..6323)	Theileria parva strain Muguga	3499529
TpMuguga_03g00926	mRNA	TpMuguga_03g00926	NW_876242.1	6523	8736	R	TpMuguga_03g00926	complement(<6523..>8736)	Theileria parva strain Muguga	3499530
TpMuguga_03g00927	mRNA	TpMuguga_03g00927	NW_876242.1	8878	10926	R	TpMuguga_03g00927	complement(<8878..>10926)	Theileria parva strain Muguga	3499531
TpMuguga_03g00928	mRNA	TpMuguga_03g00928	NW_876242.1	11476	12915	R	TpMuguga_03g00928	complement(<11476..12915)	Theileria parva strain Muguga	3499526
TpMuguga_04g00001	mRNA	TpMuguga_04g00001	NW_876247.1	2938	4527	R	TpMuguga_04g00001	complement(<2938..>4527)	Theileria parva strain Muguga	3501404
TpMuguga_04g00002	mRNA	TpMuguga_04g00002	NW_876247.1	5030	6623	R	TpMuguga_04g00002	complement(5030..6623)	Theileria parva strain Muguga	3501405
TpMuguga_04g02000	mRNA	TpMuguga_04g02000	NW_876247.1	6685	8236	D	TpMuguga_04g02000	join(6685..6828,7044..7078,7249..8236)	Theileria parva strain Muguga	86047798
TpMuguga_04g02010	mRNA	TpMuguga_04g02010	NW_876247.1	7151	8321	R	TpMuguga_04g02010	complement(7151..8321)	Theileria parva strain Muguga	86047800
TpMuguga_04g00003	mRNA	TpMuguga_04g00003	NW_876247.1	8500	10209	R	TpMuguga_04g00003	complement(join(<8500..8681,8706..>10209))	Theileria parva strain Muguga	3501406
TpMuguga_04g02005	mRNA	TpMuguga_04g02005	NW_876247.1	10419	10988	R	TpMuguga_04g02005	complement(<10419..>10988)	Theileria parva strain Muguga	86047799
TpMuguga_04g02015	mRNA	TpMuguga_04g02015	NW_876247.1	11119	12018	R	TpMuguga_04g02015	complement(<11119..>12018)	Theileria parva strain Muguga	3501407
TpMuguga_04g00005	mRNA	TpMuguga_04g00005	NW_876247.1	12228	13850	R	TpMuguga_04g00005	complement(<12228..>13850)	Theileria parva strain Muguga	3501401
TpMuguga_04g00006	mRNA	TpMuguga_04g00006	NW_876247.1	14074	15642	R	TpMuguga_04g00006	complement(<14074..>15642)	Theileria parva strain Muguga	3501402
TpMuguga_04g00007	mRNA	TpMuguga_04g00007	NW_876247.1	15853	17262	R	TpMuguga_04g00007	complement(<15853..>17262)	Theileria parva strain Muguga	3501403
TpMuguga_04g00008	mRNA	TpMuguga_04g00008	NW_876246.1	147	1565	R	TpMuguga_04g00008	complement(join(<147..191,221..805,849..>1565))	Theileria parva strain Muguga	3501005
TpMuguga_04g00923	mRNA	TpMuguga_04g00923	NW_876246.1	1776	3185	R	TpMuguga_04g00923	complement(<1776..>3185)	Theileria parva strain Muguga	3501006
TpMuguga_04g00009	mRNA	TpMuguga_04g00009	NW_876246.1	3365	5044	R	TpMuguga_04g00009	complement(<3365..>5044)	Theileria parva strain Muguga	3501007
TpMuguga_04g00010	mRNA	TpMuguga_04g00010	NW_876246.1	5219	6773	R	TpMuguga_04g00010	complement(5219..6773)	Theileria parva strain Muguga	3501306
TpMuguga_04g00011	mRNA	TpMuguga_04g00011	NW_876246.1	6902	7687	R	TpMuguga_04g00011	complement(<6902..>7687)	Theileria parva strain Muguga	3501307
TpMuguga_04g00012	mRNA	TpMuguga_04g00012	NW_876246.1	8370	9689	R	TpMuguga_04g00012	complement(<8370..>9689)	Theileria parva strain Muguga	3501308
TpMuguga_04g00013	mRNA	TpMuguga_04g00013	NW_876246.1	9929	12041	R	TpMuguga_04g00013	complement(9929..>12041)	Theileria parva strain Muguga	3501309
TpMuguga_04g00014	mRNA	TpMuguga_04g00014	NW_876246.1	12285	14127	R	TpMuguga_04g00014	complement(12285..14127)	Theileria parva strain Muguga	3501310
TpMuguga_04g00015	mRNA	TpMuguga_04g00015	NW_876246.1	14348	15911	R	TpMuguga_04g00015	complement(<14348..15911)	Theileria parva strain Muguga	3501311
TpMuguga_04g00016	mRNA	TpMuguga_04g00016	NW_876246.1	16151	17549	R	TpMuguga_04g00016	complement(16151..>17549)	Theileria parva strain Muguga	3501312
TpMuguga_04g00017	mRNA	TpMuguga_04g00017	NW_876246.1	17812	19023	R	TpMuguga_04g00017	complement(17812..>19023)	Theileria parva strain Muguga	3501313
TpMuguga_04g00018	mRNA	TpMuguga_04g00018	NW_876246.1	19156	20301	R	TpMuguga_04g00018	complement(<19156..>20301)	Theileria parva strain Muguga	3501314
TpMuguga_04g00019	mRNA	TpMuguga_04g00019	NW_876246.1	20467	21943	R	TpMuguga_04g00019	complement(20467..21943)	Theileria parva strain Muguga	3501025
TpMuguga_04g00020	mRNA	TpMuguga_04g00020	NW_876246.1	22290	24146	R	TpMuguga_04g00020	complement(<22290..>24146)	Theileria parva strain Muguga	3501026
TpMuguga_04g00021	mRNA	ABCC4	NW_876246.1	25185	30145	D	TpMuguga_04g00021	25185..30145	Theileria parva strain Muguga	3501027
TpMuguga_04g00022	mRNA	TpMuguga_04g00022	NW_876246.1	30419	33718	R	TpMuguga_04g00022	complement(<30419..>33718)	Theileria parva strain Muguga	3501028
TpMuguga_04g00023	mRNA	TpMuguga_04g00023	NW_876246.1	34012	36077	R	TpMuguga_04g00023	complement(34012..>36077)	Theileria parva strain Muguga	3501029
TpMuguga_04g00024	mRNA	TpMuguga_04g00024	NW_876246.1	36699	37598	R	TpMuguga_04g00024	complement(<36699..>37598)	Theileria parva strain Muguga	3501030
TpMuguga_04g02560	mRNA	SODB	NW_876246.1	37657	38744	R	TpMuguga_04g02560	complement(join(<37657..37781,37947..38075,38173..38358,38388..38432,38459..38549,38580..>38744))	Theileria parva strain Muguga	3501031
TpMuguga_04g02555	mRNA	TpMuguga_04g02555	NW_876246.1	38737	40137	R	TpMuguga_04g02555	complement(join(<38737..38790,38821..38876,38907..38958,38989..39176,39207..39290,39320..39446,39523..39586,39621..39742,39898..40034,40089..>40137))	Theileria parva strain Muguga	86047843
TpMuguga_04g00026	mRNA	mnmE	NW_876246.1	40218	42683	D	TpMuguga_04g00026	join(40218..40529,40571..40691,40753..40849,40882..40951,41059..41124,41155..41342,41383..41438,41528..42298,42350..42401,42517..42683)	Theileria parva strain Muguga	3500625
TpMuguga_04g00027	mRNA	ERCC6	NW_876246.1	42646	46302	R	TpMuguga_04g00027	complement(join(42646..42862,42895..42925,42958..45491,45581..45800,45841..45918,46011..46121,46176..46302))	Theileria parva strain Muguga	3500626
TpMuguga_04g00028	mRNA	TpMuguga_04g00028	NW_876246.1	46946	48634	D	TpMuguga_04g00028	<46946..>48634	Theileria parva strain Muguga	3500627
TpMuguga_04g02425	mRNA	TpMuguga_04g02425	NW_876246.1	48906	49893	D	TpMuguga_04g02425	join(48906..49114,49166..49383,49453..49893)	Theileria parva strain Muguga	86047836
TpMuguga_04g00029	mRNA	TpMuguga_04g00029	NW_876246.1	50131	52388	D	TpMuguga_04g00029	<50131..52388	Theileria parva strain Muguga	3500628
TpMuguga_04g02345	mRNA	TpMuguga_04g02345	NW_876246.1	52721	54135	D	TpMuguga_04g02345	52721..>54135	Theileria parva strain Muguga	86047830
TpMuguga_04g02375	mRNA	TpMuguga_04g02375	NW_876246.1	54522	55934	D	TpMuguga_04g02375	54522..55934	Theileria parva strain Muguga	3500629
TpMuguga_04g00031	mRNA	RPT3	NW_876246.1	56028	57842	D	TpMuguga_04g00031	join(56028..56175,56297..56487,56557..56689,56796..57055,57132..57463,57561..57645,57724..57842)	Theileria parva strain Muguga	3500630
TpMuguga_04g00032	mRNA	RPL7	NW_876246.1	57899	58962	D	TpMuguga_04g00032	join(<57899..58009,58048..58136,58278..58392,58474..58613,58643..58834,58875..58962)	Theileria parva strain Muguga	3500511
TpMuguga_04g00033	mRNA	TpMuguga_04g00033	NW_876246.1	58951	61295	R	TpMuguga_04g00033	complement(join(58951..59068,59100..59287,59437..59643,59731..59883,59975..60233,60300..60643,60833..60929,60967..61295))	Theileria parva strain Muguga	3500512
TpMuguga_04g00034	mRNA	Kmt2c	NW_876246.1	61134	62566	D	TpMuguga_04g00034	join(61134..61424,61534..61651,61683..61749,61828..61938,62022..62102,62197..62362,62457..>62566)	Theileria parva strain Muguga	3500513
TpMuguga_04g00035	mRNA	U2AF65B	NW_876246.1	62734	64077	D	TpMuguga_04g00035	join(62734..62814,62919..63049,63125..64077)	Theileria parva strain Muguga	3500514
TpMuguga_04g00036	mRNA	TPX	NW_876246.1	64443	65341	D	TpMuguga_04g00036	join(64443..65083,65176..65341)	Theileria parva strain Muguga	3500515
TpMuguga_04g00037	mRNA	TpMuguga_04g00037	NW_876246.1	65382	65889	R	TpMuguga_04g00037	complement(join(65382..65538,65572..65635,65718..65755,65791..65889))	Theileria parva strain Muguga	3500516
TpMuguga_04g00038	mRNA	TpMuguga_04g00038	NW_876246.1	65918	66945	R	TpMuguga_04g00038	complement(join(65918..66014,66050..66226,66312..66441,66502..66608,66643..66671,66711..66740,66792..66945))	Theileria parva strain Muguga	3500575
TpMuguga_04g00039	mRNA	TpMuguga_04g00039	NW_876246.1	66939	69614	R	TpMuguga_04g00039	complement(join(<66939..67110,67192..67332,67413..67563,67616..67787,67883..68670,68780..>69614))	Theileria parva strain Muguga	3500576
TpMuguga_04g00040	mRNA	TpMuguga_04g00040	NW_876246.1	69885	70870	R	TpMuguga_04g00040	complement(join(69885..70009,70116..70151,70182..70236,70266..70399,70434..70520,70588..70686,70762..70870))	Theileria parva strain Muguga	3500577
TpMuguga_04g00041	mRNA	TpMuguga_04g00041	NW_876246.1	70934	71973	D	TpMuguga_04g00041	join(70934..71292,71328..71452,71544..71795,71830..71973)	Theileria parva strain Muguga	3500578
TpMuguga_04g02645	mRNA	TpMuguga_04g02645	NW_876246.1	71974	73656	D	TpMuguga_04g02645	join(71974..72103,72136..72205,72318..72445,72479..72572,72655..72725,72806..72847,72878..72939,73009..73306,73339..73404,73493..73567,73636..>73656)	Theileria parva strain Muguga	3500579
TpMuguga_04g02640	mRNA	tma20	NW_876246.1	73673	74619	D	TpMuguga_04g02640	join(<73673..73753,73874..73953,74007..74128,74215..74348,74427..74494,74523..>74619)	Theileria parva strain Muguga	3500945
TpMuguga_04g00044	mRNA	TpMuguga_04g00044	NW_876246.1	74755	78544	R	TpMuguga_04g00044	complement(join(74755..74919,74981..75133,75338..78544))	Theileria parva strain Muguga	3500946
TpMuguga_04g00045	mRNA	snf8	NW_876246.1	78656	79454	R	TpMuguga_04g00045	complement(join(78656..78733,78770..>79454))	Theileria parva strain Muguga	3500947
TpMuguga_04g00046	mRNA	TpMuguga_04g00046	NW_876246.1	79524	80346	R	TpMuguga_04g00046	complement(join(<79524..79750,79825..80346))	Theileria parva strain Muguga	3500948
TpMuguga_04g00048	mRNA	TpMuguga_04g00048	NW_876246.1	81647	83163	D	TpMuguga_04g00048	<81647..83163	Theileria parva strain Muguga	3500638
TpMuguga_04g00049	mRNA	FD1	NW_876246.1	83169	83950	D	TpMuguga_04g00049	join(83169..83450,83560..83670,83764..83950)	Theileria parva strain Muguga	3500639
TpMuguga_04g00050	mRNA	RPS15	NW_876246.1	83980	84780	R	TpMuguga_04g00050	complement(join(83980..84290,84371..84518,84638..84780))	Theileria parva strain Muguga	3500640
TpMuguga_04g00051	mRNA	TpMuguga_04g00051	NW_876246.1	85086	86644	D	TpMuguga_04g00051	join(<85086..86088,86144..86244,86306..>86644)	Theileria parva strain Muguga	3500641
TpMuguga_04g00052	mRNA	TpMuguga_04g00052	NW_876246.1	86828	87608	D	TpMuguga_04g00052	join(<86828..86969,87072..87283,87364..87608)	Theileria parva strain Muguga	3500642
TpMuguga_04g00053	mRNA	TpMuguga_04g00053	NW_876246.1	87714	88525	D	TpMuguga_04g00053	join(87714..87801,87843..88525)	Theileria parva strain Muguga	86047792
TpMuguga_04g00054	mRNA	TpMuguga_04g00054	NW_876246.1	88530	90443	R	TpMuguga_04g00054	complement(88530..90443)	Theileria parva strain Muguga	3501332
TpMuguga_04g00055	mRNA	TpMuguga_04g00055	NW_876246.1	90524	92452	R	TpMuguga_04g00055	complement(join(90524..90803,90836..91044,91089..92452))	Theileria parva strain Muguga	3501333
TpMuguga_04g00056	mRNA	TpMuguga_04g00056	NW_876246.1	91898	92617	D	TpMuguga_04g00056	91898..92617	Theileria parva strain Muguga	86047793
TpMuguga_04g00057	mRNA	MCM4	NW_876246.1	92702	96009	D	TpMuguga_04g00057	join(92702..93379,93457..94345,94422..94746,94779..95498,95528..96009)	Theileria parva strain Muguga	3501335
TpMuguga_04g00058	mRNA	TpMuguga_04g00058	NW_876246.1	100145	101745	R	TpMuguga_04g00058	complement(100145..101745)	Theileria parva strain Muguga	3501336
TpMuguga_04g00059	mRNA	TpMuguga_04g00059	NW_876246.1	102302	103611	R	TpMuguga_04g00059	complement(join(102302..102494,102579..102698,102785..102881,102963..103041,103136..103267,103324..103611))	Theileria parva strain Muguga	3501337
TpMuguga_04g00060	mRNA	TpMuguga_04g00060	NW_876246.1	103876	104802	R	TpMuguga_04g00060	complement(join(<103876..103945,103984..104037,104094..104170,104297..104448,104561..104654,104695..>104802))	Theileria parva strain Muguga	3501338
TpMuguga_04g00061	mRNA	TXNDC9	NW_876246.1	104916	105903	D	TpMuguga_04g00061	join(104916..105050,105136..105441,105504..105662,105737..105797,105830..>105903)	Theileria parva strain Muguga	3501155
TpMuguga_04g00062	mRNA	TRM10	NW_876246.1	105978	106580	R	TpMuguga_04g00062	complement(<105978..>106580)	Theileria parva strain Muguga	3501156
TpMuguga_04g00063	mRNA	METAP1	NW_876246.1	106677	108378	D	TpMuguga_04g00063	join(<106677..106826,106879..106934,106968..107142,107224..107396,107427..107468,107579..107803,107836..107926,108007..108061,108093..108194,108311..>108378)	Theileria parva strain Muguga	3501157
TpMuguga_04g00064	mRNA	TpMuguga_04g00064	NW_876246.1	108521	110040	D	TpMuguga_04g00064	join(<108521..109849,109921..>110040)	Theileria parva strain Muguga	3501158
TpMuguga_04g00065	mRNA	cid13	NW_876246.1	110346	111868	R	TpMuguga_04g00065	complement(join(<110346..111019,111079..>111868))	Theileria parva strain Muguga	3501159
TpMuguga_04g00066	mRNA	CPN60	NW_876246.1	111967	114791	D	TpMuguga_04g00066	join(111967..112834,112890..113038,113148..113481,113636..113940,114062..114145,114214..114466,114544..114791)	Theileria parva strain Muguga	3501160
TpMuguga_04g02400	mRNA	TpMuguga_04g02400	NW_876246.1	115052	116603	D	TpMuguga_04g02400	join(<115052..115172,115356..115670,115771..>116603)	Theileria parva strain Muguga	86047834
TpMuguga_04g02395	mRNA	TpMuguga_04g02395	NW_876246.1	116765	119704	D	TpMuguga_04g02395	join(<116765..117027,117114..117198,117243..117335,117397..117460,117493..117599,117630..117743,117803..117879,117914..117945,117976..118070,118151..118417,118477..118617,118648..118963,119112..>119704)	Theileria parva strain Muguga	3500847
TpMuguga_04g00068	mRNA	TpMuguga_04g00068	NW_876246.1	119961	120869	R	TpMuguga_04g00068	complement(join(<119961..120262,120357..120572,120686..>120869))	Theileria parva strain Muguga	3500848
TpMuguga_04g00069	mRNA	TpMuguga_04g00069	NW_876246.1	121161	122052	R	TpMuguga_04g00069	complement(join(<121161..121381,121505..121595,121628..121717,121768..>122052))	Theileria parva strain Muguga	3500849
TpMuguga_04g00070	mRNA	TpMuguga_04g00070	NW_876246.1	122284	122636	D	TpMuguga_04g00070	join(<122284..122430,122565..>122636)	Theileria parva strain Muguga	3500850
TpMuguga_04g00071	mRNA	H2B2	NW_876246.1	122818	123641	D	TpMuguga_04g00071	join(122818..123125,123238..123641)	Theileria parva strain Muguga	3500851
TpMuguga_04g00072	mRNA	MBD9	NW_876246.1	123838	126732	R	TpMuguga_04g00072	complement(<123838..>126732)	Theileria parva strain Muguga	3501113
TpMuguga_04g00073	mRNA	TpMuguga_04g00073	NW_876246.1	126863	128257	R	TpMuguga_04g00073	complement(126863..>128257)	Theileria parva strain Muguga	3501114
TpMuguga_04g00074	mRNA	rsmA	NW_876246.1	128412	130305	R	TpMuguga_04g00074	complement(join(<128412..129269,129324..129406,129559..129651,129681..129763,129997..130229,130258..>130305))	Theileria parva strain Muguga	3501115
TpMuguga_04g00075	mRNA	TpMuguga_04g00075	NW_876246.1	130290	132712	R	TpMuguga_04g00075	complement(join(130290..132369,132493..132712))	Theileria parva strain Muguga	3501116
TpMuguga_04g00076	mRNA	TpMuguga_04g00076	NW_876246.1	132916	134284	D	TpMuguga_04g00076	join(132916..133607,133850..133992,134144..134211,134247..134284)	Theileria parva strain Muguga	3501117
TpMuguga_04g02500	mRNA	TpMuguga_04g02500	NW_876246.1	134398	138036	R	TpMuguga_04g02500	complement(join(<134398..134567,134849..135824,136428..136603,136726..137172,137235..137434,137548..137707,137811..137973,138028..>138036))	Theileria parva strain Muguga	3501339
TpMuguga_04g00080	mRNA	TpMuguga_04g00080	NW_876246.1	138332	140903	R	TpMuguga_04g00080	complement(138332..140903)	Theileria parva strain Muguga	3501340
TpMuguga_04g00081	mRNA	TpMuguga_04g00081	NW_876246.1	141061	143913	D	TpMuguga_04g00081	141061..>143913	Theileria parva strain Muguga	3501341
TpMuguga_04g00082	mRNA	TpMuguga_04g00082	NW_876246.1	143944	144837	R	TpMuguga_04g00082	complement(<143944..>144837)	Theileria parva strain Muguga	3501342
TpMuguga_04g00083	mRNA	TpMuguga_04g00083	NW_876246.1	144930	145715	D	TpMuguga_04g00083	<144930..>145715	Theileria parva strain Muguga	3501343
TpMuguga_04g00084	mRNA	TpMuguga_04g00084	NW_876246.1	146307	148478	R	TpMuguga_04g00084	complement(<146307..>148478)	Theileria parva strain Muguga	3501344
TpMuguga_04g00085	mRNA	TpMuguga_04g00085	NW_876246.1	148916	149512	D	TpMuguga_04g00085	<148916..>149512	Theileria parva strain Muguga	3501345
TpMuguga_04g00086	mRNA	TpMuguga_04g00086	NW_876246.1	149682	150339	D	TpMuguga_04g00086	149682..>150339	Theileria parva strain Muguga	3501346
TpMuguga_04g00087	mRNA	TpMuguga_04g00087	NW_876246.1	150435	151506	R	TpMuguga_04g00087	complement(join(<150435..150862,150914..151506))	Theileria parva strain Muguga	3501120
TpMuguga_04g00088	mRNA	fft3	NW_876246.1	151977	155744	R	TpMuguga_04g00088	complement(join(<151977..153526,153933..154476,154753..154971,155233..155333,155411..155744))	Theileria parva strain Muguga	3501121
TpMuguga_04g00089	mRNA	cct3	NW_876246.1	155919	159517	D	TpMuguga_04g00089	join(155919..156025,156124..156331,156565..156832,157155..157625,157923..158205,158603..158718,158810..158905,159175..159329,159397..159517)	Theileria parva strain Muguga	3501122
TpMuguga_04g02455	mRNA	TpMuguga_04g02455	NW_876246.1	159381	160102	R	TpMuguga_04g02455	complement(join(159381..159646,159934..>160102))	Theileria parva strain Muguga	86047838
TpMuguga_04g02450	mRNA	TpMuguga_04g02450	NW_876246.1	160189	163229	R	TpMuguga_04g02450	complement(join(<160189..160338,160371..160442,160502..160587,160830..160947,161087..161185,161216..161342,161412..161492,161982..162405,162639..162924,162997..163046,163114..163229))	Theileria parva strain Muguga	3501124
TpMuguga_04g00092	mRNA	TpMuguga_04g00092	NW_876246.1	163303	163929	D	TpMuguga_04g00092	join(163303..163402,163455..163547,163730..163929)	Theileria parva strain Muguga	3501125
TpMuguga_04g00093	mRNA	TpMuguga_04g00093	NW_876246.1	164436	167212	D	TpMuguga_04g00093	join(164436..164702,164819..164936,165103..165310,165644..165938,166183..166455,166815..167212)	Theileria parva strain Muguga	3500885
TpMuguga_04g00094	mRNA	RpL32	NW_876246.1	167610	168158	D	TpMuguga_04g00094	join(167610..167702,167830..168158)	Theileria parva strain Muguga	3500886
TpMuguga_04g00095	mRNA	TpMuguga_04g00095	NW_876246.1	168622	169290	R	TpMuguga_04g00095	complement(<168622..>169290)	Theileria parva strain Muguga	3500887
TpMuguga_04g00096	mRNA	TpMuguga_04g00096	NW_876246.1	169892	170758	R	TpMuguga_04g00096	complement(<169892..>170758)	Theileria parva strain Muguga	3500888
TpMuguga_04g00097	mRNA	TpMuguga_04g00097	NW_876246.1	171261	172184	R	TpMuguga_04g00097	complement(<171261..>172184)	Theileria parva strain Muguga	3500889
TpMuguga_04g00098	mRNA	TpMuguga_04g00098	NW_876246.1	172719	173583	R	TpMuguga_04g00098	complement(172719..>173583)	Theileria parva strain Muguga	3500890
TpMuguga_04g00099	mRNA	TpMuguga_04g00099	NW_876246.1	173708	174574	R	TpMuguga_04g00099	complement(<173708..>174574)	Theileria parva strain Muguga	3500690
TpMuguga_04g00100	mRNA	TpMuguga_04g00100	NW_876246.1	175019	175840	R	TpMuguga_04g00100	complement(<175019..>175840)	Theileria parva strain Muguga	3500691
TpMuguga_04g00101	mRNA	TpMuguga_04g00101	NW_876246.1	176385	177464	R	TpMuguga_04g00101	complement(<176385..>177464)	Theileria parva strain Muguga	3500692
TpMuguga_04g00102	mRNA	TpMuguga_04g00102	NW_876246.1	177949	178677	R	TpMuguga_04g00102	complement(<177949..>178677)	Theileria parva strain Muguga	3500693
TpMuguga_04g00103	mRNA	TpMuguga_04g00103	NW_876246.1	179308	180162	R	TpMuguga_04g00103	complement(<179308..>180162)	Theileria parva strain Muguga	3500694
TpMuguga_04g00104	mRNA	TpMuguga_04g00104	NW_876246.1	180734	181208	R	TpMuguga_04g00104	complement(join(<180734..180828,180857..>181208))	Theileria parva strain Muguga	3500695
TpMuguga_04g00105	mRNA	TpMuguga_04g00105	NW_876246.1	181528	184316	R	TpMuguga_04g00105	complement(join(181528..181614,182429..182701,183000..>184316))	Theileria parva strain Muguga	3500696
TpMuguga_04g00106	mRNA	TpMuguga_04g00106	NW_876246.1	184428	187800	R	TpMuguga_04g00106	complement(join(<184428..184865,185042..185945,186177..186629,186848..187062,187173..187243,187338..187461,187539..187610,187706..187800))	Theileria parva strain Muguga	3500697
TpMuguga_04g00107	mRNA	TpMuguga_04g00107	NW_876246.1	187872	189656	D	TpMuguga_04g00107	join(<187872..187965,188041..188144,188381..188493,188551..188620,188898..188977,189205..189280,189311..189347,189450..189509,189539..189656)	Theileria parva strain Muguga	3500814
TpMuguga_04g00108	mRNA	Spase22-23	NW_876246.1	189834	190846	R	TpMuguga_04g00108	complement(join(<189834..190178,190537..190687,190751..190846))	Theileria parva strain Muguga	3500815
TpMuguga_04g00109	mRNA	TpMuguga_04g00109	NW_876246.1	190874	191561	D	TpMuguga_04g00109	join(<190874..191048,191364..191561)	Theileria parva strain Muguga	3500816
TpMuguga_04g00110	mRNA	TpMuguga_04g00110	NW_876246.1	193204	193930	R	TpMuguga_04g00110	complement(join(<193204..193527,193751..>193930))	Theileria parva strain Muguga	3500817
TpMuguga_04g00111	mRNA	TpMuguga_04g00111	NW_876246.1	194458	196530	R	TpMuguga_04g00111	complement(join(<194458..194715,194961..195077,195180..195329,195550..195606,195638..195713,195761..195812,195850..195891,196141..196302,196377..>196530))	Theileria parva strain Muguga	3500818
TpMuguga_04g00112	mRNA	TpMuguga_04g00112	NW_876246.1	196669	198550	D	TpMuguga_04g00112	join(<196669..197046,197261..197591,197805..>198550)	Theileria parva strain Muguga	3501372
TpMuguga_04g00113	mRNA	SAP9	NW_876246.1	198932	200325	D	TpMuguga_04g00113	join(198932..199538,199791..200325)	Theileria parva strain Muguga	3501373
TpMuguga_04g00114	mRNA	TpMuguga_04g00114	NW_876246.1	201013	201957	D	TpMuguga_04g00114	join(<201013..201140,201257..201386,201592..>201957)	Theileria parva strain Muguga	3501374
TpMuguga_04g00115	mRNA	TpMuguga_04g00115	NW_876246.1	202209	203112	R	TpMuguga_04g00115	complement(202209..203112)	Theileria parva strain Muguga	3501375
TpMuguga_04g00116	mRNA	TpMuguga_04g00116	NW_876246.1	203553	204788	R	TpMuguga_04g00116	complement(<203553..204788)	Theileria parva strain Muguga	3501376
TpMuguga_04g00117	mRNA	SAP9	NW_876246.1	205284	206664	R	TpMuguga_04g00117	complement(join(<205284..205793,206062..>206664))	Theileria parva strain Muguga	3501377
TpMuguga_04g00118	mRNA	TpMuguga_04g00118	NW_876246.1	206772	209072	D	TpMuguga_04g00118	join(<206772..206855,207160..207288,207429..207506,207755..207949,208331..208471,208505..208593,208623..208732,208966..>209072)	Theileria parva strain Muguga	3501378
TpMuguga_04g02385	mRNA	TpMuguga_04g02385	NW_876246.1	209061	212565	R	TpMuguga_04g02385	complement(join(209061..209360,209554..210018,210361..210934,211431..>212565))	Theileria parva strain Muguga	3500901
TpMuguga_04g00121	mRNA	TpMuguga_04g00121	NW_876246.1	212627	213318	R	TpMuguga_04g00121	complement(join(<212627..212751,213009..213082,213173..>213318))	Theileria parva strain Muguga	3500903
TpMuguga_04g00122	mRNA	Melk	NW_876246.1	213446	215597	R	TpMuguga_04g00122	complement(join(<213446..214191,214495..214760,215224..>215597))	Theileria parva strain Muguga	3500904
TpMuguga_04g00123	mRNA	TpMuguga_04g00123	NW_876246.1	215862	216439	R	TpMuguga_04g00123	complement(join(<215862..215942,216308..>216439))	Theileria parva strain Muguga	3500905
TpMuguga_04g02595	mRNA	TpMuguga_04g02595	NW_876246.1	216611	217798	R	TpMuguga_04g02595	complement(<216611..>217798)	Theileria parva strain Muguga	86047845
TpMuguga_04g02590	mRNA	Ncl	NW_876246.1	217886	218924	R	TpMuguga_04g02590	complement(join(217886..217958,218149..218312,218651..218713,218825..218924))	Theileria parva strain Muguga	3500906
TpMuguga_04g00125	mRNA	rpl10a	NW_876246.1	219031	220844	D	TpMuguga_04g00125	join(219031..219695,219759..219859,220112..220844)	Theileria parva strain Muguga	3501248
TpMuguga_04g00126	mRNA	TpMuguga_04g00126	NW_876246.1	221580	223471	R	TpMuguga_04g00126	complement(join(<221580..223346,223412..>223471))	Theileria parva strain Muguga	3501249
TpMuguga_04g00127	mRNA	TpMuguga_04g00127	NW_876246.1	223731	225353	R	TpMuguga_04g00127	complement(<223731..>225353)	Theileria parva strain Muguga	3501250
TpMuguga_04g02480	mRNA	TpMuguga_04g02480	NW_876246.1	226031	226940	D	TpMuguga_04g02480	join(226031..226285,226382..226710,226741..226940)	Theileria parva strain Muguga	86047840
TpMuguga_04g00128	mRNA	TpMuguga_04g00128	NW_876246.1	227214	229216	D	TpMuguga_04g00128	227214..229216	Theileria parva strain Muguga	3501251
TpMuguga_04g00129	mRNA	SSRP1	NW_876246.1	229516	232420	D	TpMuguga_04g00129	join(229516..229612,229758..229872,229986..230062,230136..230459,230806..231028,231202..231342,231374..231468,231572..231663,231696..231828,232056..232197,232392..>232420)	Theileria parva strain Muguga	3501252
TpMuguga_04g02405	mRNA	LCMT1	NW_876246.1	232540	233914	D	TpMuguga_04g02405	join(<232540..232607,232689..232774,232808..233085,233125..233189,233220..233283,233316..233369,233399..233446,233476..233531,233650..233740,233771..>233914)	Theileria parva strain Muguga	3501254
TpMuguga_04g02020	mRNA	Lcmt2	NW_876246.1	234066	235541	D	TpMuguga_04g02020	join(234066..234225,234257..234342,234375..234652,234682..234746,234776..234839,234873..234932,234963..235010,235037..235098,235130..235217,235248..>235541)	Theileria parva strain Muguga	3501212
TpMuguga_04g00134	mRNA	Lcmt2	NW_876246.1	235780	237284	D	TpMuguga_04g00134	join(235780..235880,235927..236012,236041..236309,236492..236620,236651..236710,236741..236788,236841..236902,236933..237026,237057..>237284)	Theileria parva strain Muguga	3501213
TpMuguga_04g00135	mRNA	TpMuguga_04g00135	NW_876246.1	237395	238994	D	TpMuguga_04g00135	join(237395..237541,237585..237670,237702..237979,238067..238195,238260..238319,238424..238485,238535..238628,238680..>238994)	Theileria parva strain Muguga	3501214
TpMuguga_04g00136	mRNA	TpMuguga_04g00136	NW_876246.1	239378	240156	D	TpMuguga_04g00136	join(<239378..239382,239460..>240156)	Theileria parva strain Muguga	3501215
TpMuguga_04g00137	mRNA	TpMuguga_04g00137	NW_876246.1	240285	242352	R	TpMuguga_04g00137	complement(join(<240285..240964,241034..241282,241403..241538,241598..241629,241662..241768,241839..242113,242224..>242352))	Theileria parva strain Muguga	3501020
TpMuguga_04g00138	mRNA	spg21	NW_876246.1	242400	244095	D	TpMuguga_04g00138	join(242400..242497,242549..242787,242962..243164,243252..243473,243515..243640,243759..>244095)	Theileria parva strain Muguga	3501021
TpMuguga_04g00139	mRNA	iksA	NW_876246.1	243678	246057	R	TpMuguga_04g00139	complement(join(243678..244091,244124..244302,244404..244702,244735..245233,245328..245820,245939..>246057))	Theileria parva strain Muguga	3501022
TpMuguga_04g00140	mRNA	TpMuguga_04g00140	NW_876246.1	246136	252725	R	TpMuguga_04g00140	complement(<246136..252725)	Theileria parva strain Muguga	3501023
TpMuguga_04g00141	mRNA	MTO1	NW_876246.1	252867	255730	R	TpMuguga_04g00141	complement(join(<252867..253014,253097..253624,253656..253781,253828..253915,253945..254052,254105..254267,254297..254410,254504..254585,254617..254779,254808..254917,254949..>255730))	Theileria parva strain Muguga	3501024
TpMuguga_04g00142	mRNA	eIF1	NW_876246.1	255842	256630	R	TpMuguga_04g00142	complement(join(255842..256213,256483..256630))	Theileria parva strain Muguga	3501013
TpMuguga_04g00143	mRNA	TpMuguga_04g00143	NW_876246.1	257013	258008	D	TpMuguga_04g00143	join(257013..257296,257354..257440,257470..257696,257740..257845,257878..258008)	Theileria parva strain Muguga	3501014
TpMuguga_04g02140	mRNA	TpMuguga_04g02140	NW_876246.1	258049	258893	R	TpMuguga_04g02140	complement(<258049..258893)	Theileria parva strain Muguga	86047814
TpMuguga_04g00144	mRNA	TpMuguga_04g00144	NW_876246.1	259064	260176	D	TpMuguga_04g00144	<259064..>260176	Theileria parva strain Muguga	3501015
TpMuguga_04g00145	mRNA	TpMuguga_04g00145	NW_876246.1	260693	264607	R	TpMuguga_04g00145	complement(<260693..>264607)	Theileria parva strain Muguga	3501016
TpMuguga_04g02025	mRNA	TpMuguga_04g02025	NW_876246.1	264666	265142	R	TpMuguga_04g02025	complement(join(<264666..264832,264867..265142))	Theileria parva strain Muguga	86047801
TpMuguga_04g00146	mRNA	TpMuguga_04g00146	NW_876246.1	265246	266517	D	TpMuguga_04g00146	<265246..>266517	Theileria parva strain Muguga	3501017
TpMuguga_04g00147	mRNA	exo1	NW_876246.1	266520	268250	R	TpMuguga_04g00147	complement(join(<266520..267646,267676..267942,267976..268180,268230..>268250))	Theileria parva strain Muguga	3501018
TpMuguga_04g00148	mRNA	TpMuguga_04g00148	NW_876246.1	268324	269360	R	TpMuguga_04g00148	complement(join(<268324..269092,269146..>269360))	Theileria parva strain Muguga	3501019
TpMuguga_04g00149	mRNA	TpMuguga_04g00149	NW_876246.1	269451	270901	D	TpMuguga_04g00149	join(<269451..269504,269539..269733,269775..270427,270490..>270901)	Theileria parva strain Muguga	3500975
TpMuguga_04g00150	mRNA	TpMuguga_04g00150	NW_876246.1	271183	271746	R	TpMuguga_04g00150	complement(<271183..>271746)	Theileria parva strain Muguga	3500976
TpMuguga_04g00151	mRNA	SNRNP40	NW_876246.1	272087	273184	R	TpMuguga_04g00151	complement(join(<272087..272175,272212..272554,272633..272847,272881..>273184))	Theileria parva strain Muguga	3500977
TpMuguga_04g00152	mRNA	RPT4B	NW_876246.1	273317	274874	R	TpMuguga_04g00152	complement(join(<273317..273507,273595..273915,273994..274146,274180..274278,274312..274650,274730..>274874))	Theileria parva strain Muguga	3500978
TpMuguga_04g00153	mRNA	TpMuguga_04g00153	NW_876246.1	275255	282752	D	TpMuguga_04g00153	join(<275255..282446,282586..>282752)	Theileria parva strain Muguga	3500979
TpMuguga_04g02115	mRNA	TpMuguga_04g02115	NW_876246.1	282842	283273	R	TpMuguga_04g02115	complement(<282842..>283273)	Theileria parva strain Muguga	86047812
TpMuguga_04g00155	mRNA	TpMuguga_04g00155	NW_876246.1	283359	284335	R	TpMuguga_04g00155	complement(join(<283359..283591,283630..283686,283778..283811,283841..284335))	Theileria parva strain Muguga	3500981
TpMuguga_04g00156	mRNA	TpMuguga_04g00156	NW_876246.1	284687	286173	D	TpMuguga_04g00156	join(284687..285719,285758..>286173)	Theileria parva strain Muguga	3500677
TpMuguga_04g02695	mRNA	TpMuguga_04g02695	NW_876246.1	286339	289223	D	TpMuguga_04g02695	join(286339..287917,288015..288379,288493..>289223)	Theileria parva strain Muguga	86047853
TpMuguga_04g02690	mRNA	TpMuguga_04g02690	NW_876246.1	289333	290238	D	TpMuguga_04g02690	join(<289333..289552,289646..289785,289881..289995,290047..290238)	Theileria parva strain Muguga	3500679
TpMuguga_04g02150	mRNA	rbgA	NW_876246.1	290296	292152	R	TpMuguga_04g02150	complement(join(<290296..291614,291678..>292152))	Theileria parva strain Muguga	3500680
TpMuguga_04g02290	mRNA	TpMuguga_04g02290	NW_876246.1	292166	292586	R	TpMuguga_04g02290	complement(join(<292166..292228,292316..292474,292536..>292586))	Theileria parva strain Muguga	3500681
TpMuguga_04g00161	mRNA	natA	NW_876246.1	292734	293596	R	TpMuguga_04g00161	complement(join(292734..292843,292945..293044,293121..293218,293316..293596))	Theileria parva strain Muguga	3500682
TpMuguga_04g00162	mRNA	rps20	NW_876246.1	293633	294336	R	TpMuguga_04g00162	complement(join(<293633..293766,293846..293959,294141..294336))	Theileria parva strain Muguga	3500504
TpMuguga_04g00163	mRNA	TpMuguga_04g00163	NW_876246.1	294814	295978	D	TpMuguga_04g00163	join(294814..295203,295431..295978)	Theileria parva strain Muguga	3500505
TpMuguga_04g00164	mRNA	TpMuguga_04g00164	NW_876246.1	296447	298254	D	TpMuguga_04g00164	296447..298254	Theileria parva strain Muguga	3500506
TpMuguga_04g00165	mRNA	TpMuguga_04g00165	NW_876246.1	298542	301133	R	TpMuguga_04g00165	complement(298542..301133)	Theileria parva strain Muguga	3500507
TpMuguga_04g00166	mRNA	Eftud2	NW_876246.1	301436	305314	R	TpMuguga_04g00166	complement(join(301436..301635,301783..301861,301952..302176,302247..302330,302435..303710,303769..305314))	Theileria parva strain Muguga	3500508
TpMuguga_04g00167	mRNA	TpMuguga_04g00167	NW_876246.1	305417	306997	D	TpMuguga_04g00167	join(<305417..305609,305686..305954,305988..306044,306079..306127,306160..306249,306311..306340,306373..306476,306544..306635,306669..306736,306832..306997)	Theileria parva strain Muguga	3500509
TpMuguga_04g02380	mRNA	TpMuguga_04g02380	NW_876246.1	306839	307330	R	TpMuguga_04g02380	complement(join(306839..307007,307069..307223,307255..307330))	Theileria parva strain Muguga	86047833
TpMuguga_04g00168	mRNA	clpP	NW_876246.1	307370	309096	D	TpMuguga_04g00168	join(307370..307572,307653..307836,307902..308060,308166..309096)	Theileria parva strain Muguga	3500510
TpMuguga_04g00169	mRNA	TpMuguga_04g00169	NW_876246.1	308421	309839	R	TpMuguga_04g00169	complement(join(308421..308727,308822..309047,309154..309839))	Theileria parva strain Muguga	3501315
TpMuguga_04g00170	mRNA	TpMuguga_04g00170	NW_876246.1	309829	311567	D	TpMuguga_04g00170	join(309829..309984,310087..310179,310211..310358,310470..310618,310705..310866,310956..311184,311276..311402,311462..311567)	Theileria parva strain Muguga	3501316
TpMuguga_04g02210	mRNA	TpMuguga_04g02210	NW_876246.1	311448	312280	R	TpMuguga_04g02210	complement(join(311448..311532,311602..311695,311761..311933,312027..312120,312207..312280))	Theileria parva strain Muguga	86047820
TpMuguga_04g00171	mRNA	TpMuguga_04g00171	NW_876246.1	312344	313480	D	TpMuguga_04g00171	join(312344..312606,312687..312777,312811..313020,313053..313480)	Theileria parva strain Muguga	3501317
TpMuguga_04g00172	mRNA	TpMuguga_04g00172	NW_876246.1	313819	316853	R	TpMuguga_04g00172	complement(join(313819..314212,314318..314470,314619..>316853))	Theileria parva strain Muguga	3501318
TpMuguga_04g00173	mRNA	Senp1	NW_876246.1	316982	318618	R	TpMuguga_04g00173	complement(join(<316982..317532,317604..318288,318367..318618))	Theileria parva strain Muguga	3501319
TpMuguga_04g00174	mRNA	clpB1	NW_876246.1	318697	323656	D	TpMuguga_04g00174	join(318697..319202,319360..319733,319861..320025,320198..320471,320624..320892,320998..321131,321230..321393,321497..321597,321659..321871,321966..322047,322167..322409,322589..322748,322918..323192,323373..323656)	Theileria parva strain Muguga	3500671
TpMuguga_04g00175	mRNA	TpMuguga_04g00175	NW_876246.1	323964	328257	R	TpMuguga_04g00175	complement(join(<323964..325249,325417..325983,326097..328257))	Theileria parva strain Muguga	3500672
TpMuguga_04g00177	mRNA	GLRX5	NW_876246.1	329144	329868	R	TpMuguga_04g00177	complement(join(<329144..329356,329508..329606,329641..329696,329757..>329868))	Theileria parva strain Muguga	3500673
TpMuguga_04g00176	mRNA	nhp2	NW_876246.1	329918	330723	D	TpMuguga_04g00176	329918..330723	Theileria parva strain Muguga	3500674
TpMuguga_04g00178	mRNA	TpMuguga_04g00178	NW_876246.1	331203	332773	D	TpMuguga_04g00178	join(<331203..332043,332175..>332773)	Theileria parva strain Muguga	3500675
TpMuguga_04g00179	mRNA	Ranbp2	NW_876246.1	332834	334122	R	TpMuguga_04g00179	complement(join(332834..333272,333427..334122))	Theileria parva strain Muguga	3500676
TpMuguga_04g00180	mRNA	TpMuguga_04g00180	NW_876246.1	334242	334698	R	TpMuguga_04g00180	complement(334242..334698)	Theileria parva strain Muguga	3501032
TpMuguga_04g00181	mRNA	TpMuguga_04g00181	NW_876246.1	334781	335247	R	TpMuguga_04g00181	complement(334781..335247)	Theileria parva strain Muguga	3501033
TpMuguga_04g00182	mRNA	SF3B3	NW_876246.1	336126	340565	R	TpMuguga_04g00182	complement(join(<336126..337009,337331..338185,338316..339941,340037..340565))	Theileria parva strain Muguga	3501034
TpMuguga_04g00183	mRNA	TpMuguga_04g00183	NW_876246.1	340640	343558	D	TpMuguga_04g00183	join(340640..340928,341029..341144,341191..341395,341473..341776,341844..341946,341978..342268,342343..342433,342487..342610,342683..342946,343070..343253,343356..343450,343484..343558)	Theileria parva strain Muguga	3501035
TpMuguga_04g00184	mRNA	TpMuguga_04g00184	NW_876246.1	343635	345425	R	TpMuguga_04g00184	complement(<343635..>345425)	Theileria parva strain Muguga	3501036
TpMuguga_04g00185	mRNA	TpMuguga_04g00185	NW_876246.1	345449	348415	R	TpMuguga_04g00185	complement(join(<345449..345863,346005..>348415))	Theileria parva strain Muguga	3501037
TpMuguga_04g00186	mRNA	TpMuguga_04g00186	NW_876246.1	348491	349376	R	TpMuguga_04g00186	complement(348491..349376)	Theileria parva strain Muguga	3501038
TpMuguga_04g00187	mRNA	pctA	NW_876246.1	348931	350838	D	TpMuguga_04g00187	join(348931..349845,349967..350481,350511..350838)	Theileria parva strain Muguga	3501138
TpMuguga_04g00188	mRNA	TpMuguga_04g00188	NW_876246.1	350952	351640	D	TpMuguga_04g00188	350952..351640	Theileria parva strain Muguga	3501139
TpMuguga_04g00189	mRNA	TpMuguga_04g00189	NW_876246.1	352083	352899	D	TpMuguga_04g00189	352083..352899	Theileria parva strain Muguga	3501140
TpMuguga_04g02180	mRNA	TpMuguga_04g02180	NW_876246.1	353418	354281	D	TpMuguga_04g02180	353418..>354281	Theileria parva strain Muguga	86047817
TpMuguga_04g02350	mRNA	TpMuguga_04g02350	NW_876246.1	354811	355547	D	TpMuguga_04g02350	354811..>355547	Theileria parva strain Muguga	3501142
TpMuguga_04g00192	mRNA	TpMuguga_04g00192	NW_876246.1	356047	356866	D	TpMuguga_04g00192	356047..356866	Theileria parva strain Muguga	86047794
TpMuguga_04g00193	mRNA	TpMuguga_04g00193	NW_876246.1	357453	358584	D	TpMuguga_04g00193	join(<357453..357681,357712..357959,357989..358192,358228..>358584)	Theileria parva strain Muguga	3501144
TpMuguga_04g00194	mRNA	WDR83	NW_876246.1	358658	359813	D	TpMuguga_04g00194	join(<358658..358703,358740..358856,358893..359027,359071..359323,359354..>359813)	Theileria parva strain Muguga	3501280
TpMuguga_04g00195	mRNA	TpMuguga_04g00195	NW_876246.1	359836	360730	R	TpMuguga_04g00195	complement(join(<359836..360027,360062..360109,360140..>360730))	Theileria parva strain Muguga	3501281
TpMuguga_04g02065	mRNA	TpMuguga_04g02065	NW_876246.1	360703	361970	R	TpMuguga_04g02065	complement(join(360703..360800,360905..>361970))	Theileria parva strain Muguga	86047805
TpMuguga_04g02230	mRNA	TpMuguga_04g02230	NW_876246.1	362015	363656	R	TpMuguga_04g02230	complement(join(<362015..362057,362123..362236,362309..362387,362416..362568,362600..362653,362687..363205,363237..363479,363530..>363656))	Theileria parva strain Muguga	3501282
TpMuguga_04g02570	mRNA	Mettl13	NW_876246.1	363715	364628	D	TpMuguga_04g02570	join(<363715..363943,363978..364082,364113..364204,364235..364296,364388..364451,364482..>364628)	Theileria parva strain Muguga	3501284
TpMuguga_04g02565	mRNA	TpMuguga_04g02565	NW_876246.1	364717	365505	D	TpMuguga_04g02565	<364717..365505	Theileria parva strain Muguga	3501285
TpMuguga_04g00200	mRNA	TpMuguga_04g00200	NW_876246.1	365514	366278	R	TpMuguga_04g00200	complement(join(<365514..365845,365877..365984,366017..>366278))	Theileria parva strain Muguga	3501235
TpMuguga_04g00201	mRNA	TpMuguga_04g00201	NW_876246.1	366577	367378	R	TpMuguga_04g00201	complement(join(<366577..366941,366971..367078,367108..>367378))	Theileria parva strain Muguga	3501236
TpMuguga_04g02275	mRNA	TpMuguga_04g02275	NW_876246.1	368596	369344	R	TpMuguga_04g02275	complement(join(<368596..368894,368924..369031,369062..>369344))	Theileria parva strain Muguga	86047824
TpMuguga_04g00202	mRNA	TpMuguga_04g00202	NW_876246.1	369683	370635	R	TpMuguga_04g00202	complement(join(<369683..369993,370024..370134,370182..370635))	Theileria parva strain Muguga	3501237
TpMuguga_04g02625	mRNA	kpna5	NW_876246.1	370636	372731	R	TpMuguga_04g02625	complement(join(370636..370804,370868..371064,371220..372731))	Theileria parva strain Muguga	3501238
TpMuguga_04g00205	mRNA	TpMuguga_04g00205	NW_876246.1	372755	374761	D	TpMuguga_04g00205	372755..374761	Theileria parva strain Muguga	3501240
TpMuguga_04g00206	mRNA	TpMuguga_04g00206	NW_876246.1	374800	377125	R	TpMuguga_04g00206	complement(join(374800..375197,375268..376382,376442..376751,376787..377125))	Theileria parva strain Muguga	3501241
TpMuguga_04g00207	mRNA	TpMuguga_04g00207	NW_876246.1	377143	377936	R	TpMuguga_04g00207	complement(join(377143..377233,377282..377936))	Theileria parva strain Muguga	3501126
TpMuguga_04g00208	mRNA	TpMuguga_04g00208	NW_876246.1	377818	378902	D	TpMuguga_04g00208	join(377818..378220,378257..378396,378422..378518,378550..378704,378734..378902)	Theileria parva strain Muguga	3501127
TpMuguga_04g00209	mRNA	TpMuguga_04g00209	NW_876246.1	378890	384805	R	TpMuguga_04g00209	complement(join(<378890..378999,379030..379864,379901..379965,380026..380271,380340..380430,380463..380816,380883..380993,381025..381084,381116..381843,381921..382064,382097..382414,382445..382627,382687..383033,383100..383682,383714..383819,383871..384034,384066..384137,384169..384347,384379..384637,384715..>384805))	Theileria parva strain Muguga	3501128
TpMuguga_04g00210	mRNA	TpMuguga_04g00210	NW_876246.1	385467	386903	D	TpMuguga_04g00210	join(<385467..385561,385599..385980,386018..386245,386278..386323,386429..386608,386638..386749,386786..>386903)	Theileria parva strain Muguga	3501129
TpMuguga_04g02260	mRNA	TpMuguga_04g02260	NW_876246.1	387335	392218	D	TpMuguga_04g02260	join(<387335..391067,391130..391370,391437..391881,391946..392071,392141..>392218)	Theileria parva strain Muguga	3501131
TpMuguga_04g00213	mRNA	ap1g1	NW_876246.1	392335	395182	R	TpMuguga_04g00213	complement(join(392335..393960,394052..395182))	Theileria parva strain Muguga	3501101
TpMuguga_04g00214	mRNA	TpMuguga_04g00214	NW_876246.1	395289	399742	D	TpMuguga_04g00214	395289..399742	Theileria parva strain Muguga	3501102
TpMuguga_04g00215	mRNA	TpMuguga_04g00215	NW_876246.1	399562	401032	R	TpMuguga_04g00215	complement(join(399562..399732,399809..399907,399971..400082,400113..400165,400248..400373,400443..400595,400710..400805,400908..401032))	Theileria parva strain Muguga	3501103
TpMuguga_04g00216	mRNA	TpMuguga_04g00216	NW_876246.1	401077	404952	D	TpMuguga_04g00216	join(401077..401574,401795..404952)	Theileria parva strain Muguga	3501104
TpMuguga_04g02175	mRNA	TpMuguga_04g02175	NW_876246.1	404952	405741	D	TpMuguga_04g02175	join(<404952..405146,405180..405267,405359..405448,405509..405741)	Theileria parva strain Muguga	86047816
TpMuguga_04g00217	mRNA	TpMuguga_04g00217	NW_876246.1	405668	406828	R	TpMuguga_04g00217	complement(join(405668..405741,405834..406029,406080..406142,406229..406557,406761..406828))	Theileria parva strain Muguga	3501105
TpMuguga_04g00218	mRNA	Tnpo1	NW_876246.1	407063	410900	D	TpMuguga_04g00218	join(407063..407510,407621..408534,408662..410017,410212..410900)	Theileria parva strain Muguga	3501106
TpMuguga_04g00219	mRNA	acsA	NW_876246.1	411035	414098	R	TpMuguga_04g00219	complement(join(411035..412212,412354..412617,412737..413216,413309..414098))	Theileria parva strain Muguga	3500858
TpMuguga_04g00220	mRNA	TpMuguga_04g00220	NW_876246.1	414825	416351	D	TpMuguga_04g00220	join(414825..415202,415395..415626,415659..416351)	Theileria parva strain Muguga	3500859
TpMuguga_04g00221	mRNA	TpMuguga_04g00221	NW_876246.1	416541	417228	R	TpMuguga_04g00221	complement(join(<416541..417049,417189..>417228))	Theileria parva strain Muguga	3500860
TpMuguga_04g00222	mRNA	TpMuguga_04g00222	NW_876246.1	417507	419217	R	TpMuguga_04g00222	complement(417507..419217)	Theileria parva strain Muguga	3500861
TpMuguga_04g02255	mRNA	TpMuguga_04g02255	NW_876246.1	419400	421605	D	TpMuguga_04g02255	join(419400..419676,419789..421605)	Theileria parva strain Muguga	3500862
TpMuguga_04g00225	mRNA	MAGO2	NW_876246.1	421147	422235	R	TpMuguga_04g00225	complement(join(421147..421611,421657..421934,422028..422146,422190..422235))	Theileria parva strain Muguga	3500864
TpMuguga_04g00226	mRNA	TpMuguga_04g00226	NW_876246.1	422394	424952	R	TpMuguga_04g00226	complement(422394..424952)	Theileria parva strain Muguga	3500836
TpMuguga_04g00227	mRNA	TpMuguga_04g00227	NW_876246.1	425054	430787	D	TpMuguga_04g00227	join(425054..428225,428348..428578,428722..430273,430358..>430787)	Theileria parva strain Muguga	3500837
TpMuguga_04g00228	mRNA	MSL10	NW_876246.1	431111	434426	D	TpMuguga_04g00228	join(431111..431399,431498..431632,431708..431870,431902..432035,432085..432356,432387..432436,432516..433028,433099..433595,433710..>434426)	Theileria parva strain Muguga	3500838
TpMuguga_04g00229	mRNA	TpMuguga_04g00229	NW_876246.1	434611	436378	D	TpMuguga_04g00229	join(434611..435162,435213..435409,435454..435787,435818..435945,436009..436087,436118..436170,436203..436274,436305..436378)	Theileria parva strain Muguga	3500839
TpMuguga_04g00230	mRNA	rad51-a	NW_876246.1	436444	437879	D	TpMuguga_04g00230	join(436444..436621,436665..436957,437058..437340,437470..437604,437668..437879)	Theileria parva strain Muguga	3500840
TpMuguga_04g00231	mRNA	MSL10	NW_876246.1	437843	442208	R	TpMuguga_04g00231	complement(join(437843..438980,439068..439461,439538..439846,439942..440278,440347..440805,440869..441018,441089..441344,441388..441521,441575..441687,441720..441799,441831..441977,442018..442108,442152..>442208))	Theileria parva strain Muguga	3500609
TpMuguga_04g00232	mRNA	TpMuguga_04g00232	NW_876246.1	442282	445281	D	TpMuguga_04g00232	join(442282..443182,443236..444086,444116..444201,444254..444317,444349..445281)	Theileria parva strain Muguga	3500610
TpMuguga_04g00233	mRNA	IWS1	NW_876246.1	445433	446440	D	TpMuguga_04g00233	<445433..>446440	Theileria parva strain Muguga	3500611
TpMuguga_04g00234	mRNA	TpMuguga_04g00234	NW_876246.1	446736	447843	D	TpMuguga_04g00234	join(<446736..446883,446920..447752,447784..>447843)	Theileria parva strain Muguga	3500612
TpMuguga_04g00235	mRNA	ATJ6	NW_876246.1	447787	449028	R	TpMuguga_04g00235	complement(join(447787..447839,447965..448042,448072..448102,448132..448244,448275..448377,448414..448558,448591..448678,448842..449028))	Theileria parva strain Muguga	3500613
TpMuguga_04g00236	mRNA	RPN8A	NW_876246.1	449107	450537	D	TpMuguga_04g00236	join(449107..449409,449542..449673,449769..449865,449897..449979,450123..450245,450346..>450537)	Theileria parva strain Muguga	3500614
TpMuguga_04g00237	mRNA	TpMuguga_04g00237	NW_876246.1	450317	451351	R	TpMuguga_04g00237	complement(join(450317..450831,450934..451011,451046..451153,451187..451351))	Theileria parva strain Muguga	3500564
TpMuguga_04g00238	mRNA	rpl-36	NW_876246.1	451451	452023	R	TpMuguga_04g00238	complement(join(<451451..451749,451779..452023))	Theileria parva strain Muguga	3500565
TpMuguga_04g00239	mRNA	bysl	NW_876246.1	452143	454224	R	TpMuguga_04g00239	complement(join(452143..452302,452520..452625,452879..453052,453210..453365,453462..453674,453710..453863,453939..454224))	Theileria parva strain Muguga	3500566
TpMuguga_04g00240	mRNA	TpMuguga_04g00240	NW_876246.1	454597	455940	D	TpMuguga_04g00240	join(454597..454714,454745..454819,454857..455595,455627..455811,455852..455940)	Theileria parva strain Muguga	3500567
TpMuguga_04g00241	mRNA	eif4g	NW_876246.1	456052	461129	R	TpMuguga_04g00241	complement(join(456052..456260,456744..461129))	Theileria parva strain Muguga	3500568
TpMuguga_04g00242	mRNA	prfB	NW_876246.1	461798	463979	D	TpMuguga_04g00242	join(461798..462508,462563..462660,462895..463326,463446..463564,463680..>463979)	Theileria parva strain Muguga	3500569
TpMuguga_04g00243	mRNA	TpMuguga_04g00243	NW_876246.1	463984	464787	R	TpMuguga_04g00243	complement(join(463984..464155,464185..464266,464359..464596,464625..>464787))	Theileria parva strain Muguga	3500593
TpMuguga_04g00244	mRNA	TpMuguga_04g00244	NW_876246.1	465271	467950	R	TpMuguga_04g00244	complement(join(465271..465525,465737..466012,466093..466822,467089..467457,467590..467647,467678..467950))	Theileria parva strain Muguga	3500594
TpMuguga_04g00245	mRNA	TpMuguga_04g00245	NW_876246.1	468490	471620	D	TpMuguga_04g00245	468490..471620	Theileria parva strain Muguga	3500595
TpMuguga_04g00246	mRNA	TpMuguga_04g00246	NW_876246.1	471654	473855	R	TpMuguga_04g00246	complement(<471654..>473855)	Theileria parva strain Muguga	3500596
TpMuguga_04g00247	mRNA	TpMuguga_04g00247	NW_876246.1	474322	476913	D	TpMuguga_04g00247	<474322..>476913	Theileria parva strain Muguga	3500597
TpMuguga_04g00248	mRNA	nol10	NW_876246.1	477010	479983	R	TpMuguga_04g00248	complement(join(477010..477198,477311..477469,477573..477789,477893..478118,478296..478471,478571..478648,478678..478782,478961..479049,479224..479385,479511..479637,479704..479777,479820..479983))	Theileria parva strain Muguga	3500598
TpMuguga_04g02165	mRNA	TBC1D5	NW_876246.1	480054	483235	D	TpMuguga_04g02165	join(480054..481234,481474..481538,481570..481646,481702..481818,481919..482065,482873..483110,483141..483235)	Theileria parva strain Muguga	3501207
TpMuguga_04g02470	mRNA	TpMuguga_04g02470	NW_876246.1	483324	484038	D	TpMuguga_04g02470	join(483324..483649,483857..483921,483954..>484038)	Theileria parva strain Muguga	86047839
TpMuguga_04g02465	mRNA	sly1	NW_876246.1	484327	486740	D	TpMuguga_04g02465	join(<484327..485278,485437..485706,485839..486149,486339..486584,486645..486740)	Theileria parva strain Muguga	3501208
TpMuguga_04g00252	mRNA	TpMuguga_04g00252	NW_876246.1	486836	488679	R	TpMuguga_04g00252	complement(486836..488679)	Theileria parva strain Muguga	3501209
TpMuguga_04g00253	mRNA	TpMuguga_04g00253	NW_876246.1	489476	491551	R	TpMuguga_04g00253	complement(join(489476..489703,489864..490013,490225..490901,490969..491551))	Theileria parva strain Muguga	3501210
TpMuguga_04g00254	mRNA	TpMuguga_04g00254	NW_876246.1	491540	492625	D	TpMuguga_04g00254	join(491540..491649,491780..491960,492056..492322,492430..492625)	Theileria parva strain Muguga	3500740
TpMuguga_04g00255	mRNA	TpMuguga_04g00255	NW_876246.1	493040	495239	R	TpMuguga_04g00255	complement(493040..495239)	Theileria parva strain Muguga	3500741
TpMuguga_04g00256	mRNA	TpMuguga_04g00256	NW_876246.1	495659	497668	R	TpMuguga_04g00256	complement(495659..497668)	Theileria parva strain Muguga	3500742
TpMuguga_04g00257	mRNA	TpMuguga_04g00257	NW_876246.1	497984	499589	D	TpMuguga_04g00257	join(497984..498225,498293..498384,498416..498477,498601..498707,498740..498813,498849..498921,499095..499151,499233..499589)	Theileria parva strain Muguga	3500743
TpMuguga_04g00258	mRNA	RRN3	NW_876246.1	499090	502858	R	TpMuguga_04g00258	complement(join(499090..499496,499645..501161,501318..502495,502582..502858))	Theileria parva strain Muguga	3500744
TpMuguga_04g00259	mRNA	TpMuguga_04g00259	NW_876246.1	502924	505294	D	TpMuguga_04g00259	join(502924..503162,503193..503283,504186..504267,504344..504413,504443..504504,504534..504744,504777..504841,504873..504908,505037..505120,505150..505221,505253..>505294)	Theileria parva strain Muguga	3500745
TpMuguga_04g00260	mRNA	TpMuguga_04g00260	NW_876246.1	505323	508611	R	TpMuguga_04g00260	complement(join(<505323..505365,505431..505558,505684..505782,505844..505942,505993..508434,508486..>508611))	Theileria parva strain Muguga	3500746
TpMuguga_04g00261	mRNA	TpMuguga_04g00261	NW_876246.1	508926	510525	R	TpMuguga_04g00261	complement(join(508926..509065,509095..509174,509305..509370,509399..509465,509547..509585,509616..509693,509757..509975,510192..510274,510307..510401,510433..510525))	Theileria parva strain Muguga	3500819
TpMuguga_04g00262	mRNA	TpMuguga_04g00262	NW_876246.1	510866	511315	R	TpMuguga_04g00262	complement(join(<510866..510926,511101..>511315))	Theileria parva strain Muguga	3500820
TpMuguga_04g00263	mRNA	TpMuguga_04g00263	NW_876246.1	511465	515429	D	TpMuguga_04g00263	join(511465..512077,512108..512168,512286..515429)	Theileria parva strain Muguga	3500821
TpMuguga_04g00264	mRNA	wdr26	NW_876246.1	515516	517959	R	TpMuguga_04g00264	complement(join(515516..516690,516839..516916,516993..517108,517276..517508,517621..517959))	Theileria parva strain Muguga	3500822
TpMuguga_04g00265	mRNA	RH21	NW_876246.1	517822	521438	D	TpMuguga_04g00265	join(517822..518367,518401..518526,518608..519001,519032..519150,519255..519434,519577..519665,519697..519813,519899..520018,520096..520300,520460..520761,520972..521159,521189..521438)	Theileria parva strain Muguga	3500823
TpMuguga_04g00266	mRNA	rps24	NW_876246.1	521531	522475	D	TpMuguga_04g00266	join(521531..521686,521837..>522475)	Theileria parva strain Muguga	3500870
TpMuguga_04g00267	mRNA	COX10	NW_876246.1	522514	524229	R	TpMuguga_04g00267	complement(join(<522514..522688,522773..522915,522995..523198,523283..523359,523391..523554,523644..523837,523870..524229))	Theileria parva strain Muguga	3500871
TpMuguga_04g00268	mRNA	Eif3b	NW_876246.1	524741	527942	D	TpMuguga_04g00268	join(<524741..524774,524813..524944,524980..525069,525162..526067,526351..526466,526549..526696,526755..526852,526954..527091,527226..527350,527389..527680,527826..>527942)	Theileria parva strain Muguga	3500872
TpMuguga_04g00269	mRNA	TpMuguga_04g00269	NW_876246.1	527931	529325	R	TpMuguga_04g00269	complement(join(527931..528054,528084..528192,528327..528863,528902..529325))	Theileria parva strain Muguga	3500873
TpMuguga_04g00270	mRNA	TpMuguga_04g00270	NW_876246.1	529366	531582	R	TpMuguga_04g00270	complement(529366..531582)	Theileria parva strain Muguga	3500874
TpMuguga_04g00271	mRNA	TpMuguga_04g00271	NW_876246.1	531187	533147	R	TpMuguga_04g00271	complement(join(531187..532856,532889..533147))	Theileria parva strain Muguga	86047795
TpMuguga_04g00272	mRNA	TpMuguga_04g00272	NW_876246.1	533200	535234	D	TpMuguga_04g00272	join(533200..533423,533517..533644,533674..533738,533772..533879,533913..534160,534226..534350,534381..534459,534492..534609,534649..535234)	Theileria parva strain Muguga	3501200
TpMuguga_04g00273	mRNA	TpMuguga_04g00273	NW_876246.1	535246	536702	R	TpMuguga_04g00273	complement(join(535246..536426,536578..536702))	Theileria parva strain Muguga	3501201
TpMuguga_04g00274	mRNA	TpMuguga_04g00274	NW_876246.1	536937	537425	R	TpMuguga_04g00274	complement(536937..537425)	Theileria parva strain Muguga	3501202
TpMuguga_04g00275	mRNA	TpMuguga_04g00275	NW_876246.1	537650	544216	R	TpMuguga_04g00275	complement(537650..>544216)	Theileria parva strain Muguga	3501203
TpMuguga_04g00276	mRNA	TpMuguga_04g00276	NW_876246.1	545003	545885	R	TpMuguga_04g00276	complement(join(<545003..545290,545322..>545885))	Theileria parva strain Muguga	3501204
TpMuguga_04g00277	mRNA	RPS14B	NW_876246.1	547398	548229	R	TpMuguga_04g00277	complement(join(547398..547535,547567..547744,547784..547961,548114..548229))	Theileria parva strain Muguga	3501205
TpMuguga_04g00278	mRNA	infB	NW_876246.1	548498	549820	R	TpMuguga_04g00278	complement(join(548498..548703,548734..548826,548858..549016,549053..549124,549157..549820))	Theileria parva strain Muguga	3501062
TpMuguga_04g00279	mRNA	infB	NW_876246.1	550236	551478	R	TpMuguga_04g00279	complement(join(550236..550391,550422..550514,550546..550704,550741..550812,550845..551478))	Theileria parva strain Muguga	3501063
TpMuguga_04g00280	mRNA	infB	NW_876246.1	551921	555552	R	TpMuguga_04g00280	complement(join(<551921..552052,552083..552175,552207..552365,552402..552473,552506..552670,552701..552784,552814..553009,553039..553670,553751..554133,554164..554317,554347..>555552))	Theileria parva strain Muguga	3501064
TpMuguga_04g00281	mRNA	TpMuguga_04g00281	NW_876246.1	555677	557351	R	TpMuguga_04g00281	complement(join(555677..555990,556023..556111,556141..556193,556230..556284,556316..556407,556437..556505,556537..556683,556716..556773,556810..556916,556950..557022,557064..557351))	Theileria parva strain Muguga	3501065
TpMuguga_04g00282	mRNA	RPL12C	NW_876246.1	557364	558094	R	TpMuguga_04g00282	complement(join(557364..557872,557908..558094))	Theileria parva strain Muguga	3501066
TpMuguga_04g00283	mRNA	TpMuguga_04g00283	NW_876246.1	558287	559591	R	TpMuguga_04g00283	complement(join(558287..558581,558613..558735,558767..558865,558896..558982,559016..559165,559202..559332,559364..559591))	Theileria parva strain Muguga	3501067
TpMuguga_04g00284	mRNA	TpMuguga_04g00284	NW_876246.1	559773	561773	R	TpMuguga_04g00284	complement(join(559773..560029,560062..560150,560182..560370,560401..560500,560534..560597,560628..560862,560899..561063,561094..561176,561209..561773))	Theileria parva strain Muguga	3501074
TpMuguga_04g00285	mRNA	nle1	NW_876246.1	561776	563791	R	TpMuguga_04g00285	complement(join(561776..561840,561883..562112,562142..562200,562256..562378,562411..562568,562602..562866,562901..562966,563002..563118,563150..563226,563256..563506,563540..563604,563698..563791))	Theileria parva strain Muguga	3501075
TpMuguga_04g00286	mRNA	TpMuguga_04g00286	NW_876246.1	563820	565516	R	TpMuguga_04g00286	complement(join(<563820..563945,563980..564075,564108..564190,564224..564285,564317..564429,564464..564556,564586..564651,564683..>565516))	Theileria parva strain Muguga	3501076
TpMuguga_04g00287	mRNA	TpMuguga_04g00287	NW_876246.1	565755	569815	D	TpMuguga_04g00287	join(565755..566243,566275..569815)	Theileria parva strain Muguga	3501077
TpMuguga_04g00288	mRNA	GBLP	NW_876246.1	569986	571486	D	TpMuguga_04g00288	join(569986..570042,570235..570413,570526..570947,571025..571486)	Theileria parva strain Muguga	3501078
TpMuguga_04g00289	mRNA	Ppp1r7	NW_876246.1	571581	572781	D	TpMuguga_04g00289	join(<571581..571715,571755..571885,571914..572013,572043..572177,572207..572362,572394..572480,572509..572653,572686..572781)	Theileria parva strain Muguga	3500830
TpMuguga_04g00290	mRNA	TpMuguga_04g00290	NW_876246.1	572829	575726	D	TpMuguga_04g00290	join(<572829..573136,573237..573408,573437..573685,573820..574002,574092..575726)	Theileria parva strain Muguga	3500831
TpMuguga_04g00291	mRNA	TpMuguga_04g00291	NW_876246.1	574371	576026	R	TpMuguga_04g00291	complement(join(574371..575138,575567..575802,575894..576026))	Theileria parva strain Muguga	3500832
TpMuguga_04g00292	mRNA	psmD13	NW_876246.1	576082	577810	D	TpMuguga_04g00292	join(576082..576493,576526..576614,576691..576831,576904..576967,576998..577089,577172..577312,577363..577619,577699..577810)	Theileria parva strain Muguga	3500833
TpMuguga_04g00293	mRNA	TpMuguga_04g00293	NW_876246.1	577669	579096	R	TpMuguga_04g00293	complement(join(577669..577964,578012..578152,578268..>579096))	Theileria parva strain Muguga	3500834
TpMuguga_04g00294	mRNA	TpMuguga_04g00294	NW_876246.1	579295	580568	R	TpMuguga_04g00294	complement(579295..580568)	Theileria parva strain Muguga	3500835
TpMuguga_04g00295	mRNA	DRP3B	NW_876246.1	580626	583428	D	TpMuguga_04g00295	join(580626..580841,580956..581690,581760..582297,582381..583428)	Theileria parva strain Muguga	3500767
TpMuguga_04g00296	mRNA	Cript	NW_876246.1	583490	584008	D	TpMuguga_04g00296	join(<583490..583553,583585..583642,583730..583804,583837..584008)	Theileria parva strain Muguga	3500768
TpMuguga_04g00297	mRNA	TpMuguga_04g00297	NW_876246.1	584436	587219	D	TpMuguga_04g00297	<584436..>587219	Theileria parva strain Muguga	3500769
TpMuguga_04g00298	mRNA	TpMuguga_04g00298	NW_876246.1	587352	588083	D	TpMuguga_04g00298	join(587352..587561,587656..587718,587753..588083)	Theileria parva strain Muguga	3500770
TpMuguga_04g02200	mRNA	TpMuguga_04g02200	NW_876246.1	587863	588445	R	TpMuguga_04g02200	complement(587863..>588445)	Theileria parva strain Muguga	86047819
TpMuguga_04g00299	mRNA	ccdc124-a	NW_876246.1	588531	589655	R	TpMuguga_04g00299	complement(join(588531..588579,588625..588720,588792..588856,588972..589074,589140..589229,589298..589405,589471..589655))	Theileria parva strain Muguga	3500771
TpMuguga_04g00300	mRNA	PAT02	NW_876246.1	589741	591732	D	TpMuguga_04g00300	589741..591732	Theileria parva strain Muguga	3500772
TpMuguga_04g00301	mRNA	TpMuguga_04g00301	NW_876246.1	591744	592472	R	TpMuguga_04g00301	complement(join(591744..591853,591887..592049,592116..592217,592336..592472))	Theileria parva strain Muguga	3500773
TpMuguga_04g00302	mRNA	CDC73	NW_876246.1	592555	594436	R	TpMuguga_04g00302	complement(join(592555..592751,592872..592935,593010..593232,593308..593466,593558..594436))	Theileria parva strain Muguga	3500644
TpMuguga_04g00303	mRNA	ndx-4	NW_876246.1	594593	595325	D	TpMuguga_04g00303	join(<594593..594728,594871..594977,595039..595151,595200..595325)	Theileria parva strain Muguga	3500645
TpMuguga_04g00304	mRNA	Lsm2	NW_876246.1	595318	595859	R	TpMuguga_04g00304	complement(join(595318..595483,595573..595737,595773..595859))	Theileria parva strain Muguga	3500646
TpMuguga_04g00305	mRNA	TRAP	NW_876246.1	596489	599714	D	TpMuguga_04g00305	join(<596489..596552,596749..599202,599265..599345,599425..599494,599588..>599714)	Theileria parva strain Muguga	3500647
TpMuguga_04g02315	mRNA	TpMuguga_04g02315	NW_876246.1	600064	600845	D	TpMuguga_04g02315	600064..600845	Theileria parva strain Muguga	86047827
TpMuguga_04g02550	mRNA	TRAP	NW_876246.1	601136	602531	D	TpMuguga_04g02550	join(601136..602110,602225..602318,602390..>602531)	Theileria parva strain Muguga	3500648
TpMuguga_04g00307	mRNA	TpMuguga_04g00307	NW_876246.1	602495	603666	D	TpMuguga_04g00307	join(602495..602917,602962..603198,603261..603666)	Theileria parva strain Muguga	3500649
TpMuguga_04g00308	mRNA	TpMuguga_04g00308	NW_876246.1	603682	604440	R	TpMuguga_04g00308	complement(join(603682..603811,603881..604098,604162..604440))	Theileria parva strain Muguga	3500528
TpMuguga_04g00309	mRNA	RPS9B	NW_876246.1	604573	605552	R	TpMuguga_04g00309	complement(join(604573..604974,605043..605196,605284..605552))	Theileria parva strain Muguga	3500529
TpMuguga_04g00310	mRNA	TpMuguga_04g00310	NW_876246.1	605825	607245	R	TpMuguga_04g00310	complement(<605825..607245)	Theileria parva strain Muguga	3500530
TpMuguga_04g02205	mRNA	SPT16	NW_876246.1	607499	611832	R	TpMuguga_04g02205	complement(join(<607499..607888,608051..608294,608372..608722,608806..609010,609072..609333,609478..609694,609757..610038,610101..610318,610377..610568,610633..610809,610871..611011,611093..611202,611282..611370,611511..611832))	Theileria parva strain Muguga	3500531
TpMuguga_04g00313	mRNA	SRSF1	NW_876246.1	611913	613269	D	TpMuguga_04g00313	join(611913..612597,612724..612904,612995..>613269)	Theileria parva strain Muguga	3500533
TpMuguga_04g00314	mRNA	TpMuguga_04g00314	NW_876246.1	613444	614160	D	TpMuguga_04g00314	<613444..>614160	Theileria parva strain Muguga	3500478
TpMuguga_04g00315	mRNA	psmB1	NW_876246.1	614176	615299	R	TpMuguga_04g00315	complement(join(614176..614269,614307..614415,614446..614552,614617..614758,614851..614920,615025..615132,615169..615299))	Theileria parva strain Muguga	3500479
TpMuguga_04g00316	mRNA	CYCU4-2	NW_876246.1	615478	617920	R	TpMuguga_04g00316	complement(615478..617920)	Theileria parva strain Muguga	3500480
TpMuguga_04g00317	mRNA	VAP	NW_876246.1	618433	619769	D	TpMuguga_04g00317	join(618433..618789,618954..619026,619111..619269,619431..619510,619563..619769)	Theileria parva strain Muguga	3500481
TpMuguga_04g02295	mRNA	RBM25	NW_876246.1	620020	622648	R	TpMuguga_04g02295	complement(join(<620020..621156,621282..621434,621591..621967,622028..622147,622260..622319,622382..622472,622598..>622648))	Theileria parva strain Muguga	3500483
TpMuguga_04g00320	mRNA	PTRHD1	NW_876246.1	622816	623444	D	TpMuguga_04g00320	join(622816..623114,623180..>623444)	Theileria parva strain Muguga	3500467
TpMuguga_04g00321	mRNA	HIST2H3D	NW_876246.1	623527	624555	R	TpMuguga_04g00321	complement(623527..624555)	Theileria parva strain Muguga	3500468
TpMuguga_04g00322	mRNA	TpMuguga_04g00322	NW_876246.1	624461	625817	D	TpMuguga_04g00322	join(624461..624937,625225..625636,625722..625817)	Theileria parva strain Muguga	3500469
TpMuguga_04g00323	mRNA	GTF3C3	NW_876246.1	625917	629677	D	TpMuguga_04g00323	join(<625917..625966,626151..626303,626415..626850,626964..627667,627731..628134,628271..628462,628511..628694,628847..629051,629128..629267,629299..629527,629585..>629677)	Theileria parva strain Muguga	3500470
TpMuguga_04g00324	mRNA	TpMuguga_04g00324	NW_876246.1	629803	631228	D	TpMuguga_04g00324	join(<629803..630210,630249..630330,630396..630517,630622..630745,630813..630951,631027..631072,631121..>631228)	Theileria parva strain Muguga	3500471
TpMuguga_04g00325	mRNA	slu7	NW_876246.1	631277	632719	R	TpMuguga_04g00325	complement(join(<631277..631415,631488..631711,631790..632024,632095..632485,632545..>632719))	Theileria parva strain Muguga	3500472
TpMuguga_04g00326	mRNA	Zdhhc20	NW_876246.1	632526	634570	D	TpMuguga_04g00326	join(632526..633573,633604..633731,633819..634081,634133..634288,634354..>634570)	Theileria parva strain Muguga	3500603
TpMuguga_04g00327	mRNA	TpMuguga_04g00327	NW_876246.1	634770	636560	R	TpMuguga_04g00327	complement(join(<634770..635302,635408..636041,636138..636213,636280..>636560))	Theileria parva strain Muguga	3500604
TpMuguga_04g00328	mRNA	TpMuguga_04g00328	NW_876246.1	636658	639096	R	TpMuguga_04g00328	complement(<636658..>639096)	Theileria parva strain Muguga	3500605
TpMuguga_04g00329	mRNA	ywiE	NW_876246.1	639507	641449	D	TpMuguga_04g00329	join(639507..639675,639705..639792,639834..639997,640095..640532,640593..640763,640827..640954,640986..641173,641202..641449)	Theileria parva strain Muguga	3500606
TpMuguga_04g02715	mRNA	TpMuguga_04g02715	NW_876246.1	641420	642468	R	TpMuguga_04g02715	complement(join(641420..641932,641962..642006,642034..642195,642227..642293,642344..>642468))	Theileria parva strain Muguga	3500607
TpMuguga_04g02195	mRNA	TpMuguga_04g02195	NW_876246.1	642449	644320	R	TpMuguga_04g02195	complement(join(<642449..643907,643938..643996,644027..>644320))	Theileria parva strain Muguga	3500608
TpMuguga_04g02080	mRNA	TpMuguga_04g02080	NW_876246.1	644327	646294	R	TpMuguga_04g02080	complement(join(<644327..644416,644494..644814,644940..645083,645114..645190,645221..645353,645384..645719,645755..645900,645934..646294))	Theileria parva strain Muguga	3500729
TpMuguga_04g00334	mRNA	POLR1B	NW_876246.1	646339	650478	D	TpMuguga_04g00334	join(646339..646564,646599..646838,646895..647093,647129..647402,647432..647626,647659..647809,647840..649642,649730..650019,650050..650351,650383..650478)	Theileria parva strain Muguga	3500730
TpMuguga_04g02045	mRNA	TpMuguga_04g02045	NW_876246.1	650505	652067	D	TpMuguga_04g02045	join(<650505..650724,650755..650954,651009..651217,651247..651422,651456..651883,651915..>652067)	Theileria parva strain Muguga	3500731
TpMuguga_04g02240	mRNA	TpMuguga_04g02240	NW_876246.1	652067	652678	D	TpMuguga_04g02240	join(<652067..652210,652241..652402,652453..652525,652554..>652678)	Theileria parva strain Muguga	3500732
TpMuguga_04g00337	mRNA	TpMuguga_04g00337	NW_876246.1	652719	654803	R	TpMuguga_04g00337	complement(join(652719..652940,652970..653058,653088..653190,653238..653355,653398..653537,653567..653985,654047..654228,654258..654335,654366..654493,654523..654722,654755..>654803))	Theileria parva strain Muguga	3500852
TpMuguga_04g00338	mRNA	TpMuguga_04g00338	NW_876246.1	655262	656242	D	TpMuguga_04g00338	join(655262..655434,655473..655687,655717..655809,655847..655923,655953..656059,656091..656242)	Theileria parva strain Muguga	3500853
TpMuguga_04g00339	mRNA	TpMuguga_04g00339	NW_876246.1	656260	658226	R	TpMuguga_04g00339	complement(join(<656260..657824,657857..>658226))	Theileria parva strain Muguga	3500854
TpMuguga_04g00340	mRNA	RPB2	NW_876246.1	658666	663245	R	TpMuguga_04g00340	complement(join(658666..659196,659239..659376,659468..659923,659989..660135,660167..660658,660735..661118,661153..661269,661367..661756,661819..662022,662083..662630,662663..662774,662869..663003,663041..663245))	Theileria parva strain Muguga	3500855
TpMuguga_04g00341	mRNA	TpMuguga_04g00341	NW_876246.1	663179	664092	D	TpMuguga_04g00341	663179..664092	Theileria parva strain Muguga	3500856
TpMuguga_04g00342	mRNA	TpMuguga_04g00342	NW_876246.1	664184	665569	D	TpMuguga_04g00342	join(664184..664343,664407..664510,664545..664725,664758..664875,664906..664984,665086..665249,665297..665569)	Theileria parva strain Muguga	3500857
TpMuguga_04g00343	mRNA	LZTR1	NW_876246.1	665757	667798	D	TpMuguga_04g00343	join(665757..667002,667098..667798)	Theileria parva strain Muguga	3500912
TpMuguga_04g00344	mRNA	TpMuguga_04g00344	NW_876246.1	668048	671816	D	TpMuguga_04g00344	<668048..671816	Theileria parva strain Muguga	3500913
TpMuguga_04g00345	mRNA	TpMuguga_04g00345	NW_876246.1	671817	674594	D	TpMuguga_04g00345	join(671817..671897,671928..672226,672310..672524,672558..672846,672898..673050,673160..673322,673363..673458,673491..673801,673833..674089,674201..674424,674457..674594)	Theileria parva strain Muguga	3500914
TpMuguga_04g00346	mRNA	TpMuguga_04g00346	NW_876246.1	674594	675447	R	TpMuguga_04g00346	complement(674594..675447)	Theileria parva strain Muguga	3500915
TpMuguga_04g00347	mRNA	TpMuguga_04g00347	NW_876246.1	675758	676326	D	TpMuguga_04g00347	join(675758..675914,676062..676178,676212..676326)	Theileria parva strain Muguga	3500916
TpMuguga_04g00348	mRNA	PRPF3	NW_876246.1	676402	678661	R	TpMuguga_04g00348	complement(join(676402..676682,676767..676923,676967..677332,677365..677505,677598..677951,677983..678332,678385..678508,678540..678661))	Theileria parva strain Muguga	3500917
TpMuguga_04g00349	mRNA	hormad1	NW_876246.1	678993	680236	D	TpMuguga_04g00349	join(<678993..679229,679279..679428,679458..679628,679687..679976,680011..680064,680097..680236)	Theileria parva strain Muguga	3500956
TpMuguga_04g00350	mRNA	gar1	NW_876246.1	680070	680953	R	TpMuguga_04g00350	complement(join(680070..680407,680492..680643,680695..680733,680804..680953))	Theileria parva strain Muguga	3500957
TpMuguga_04g00351	mRNA	rlmE	NW_876246.1	681001	682060	D	TpMuguga_04g00351	join(681001..681179,681213..681404,681448..681540,681573..681671,681747..681859,681890..682060)	Theileria parva strain Muguga	3500958
TpMuguga_04g00352	mRNA	TpMuguga_04g00352	NW_876246.1	682129	685122	R	TpMuguga_04g00352	complement(<682129..>685122)	Theileria parva strain Muguga	3500959
TpMuguga_04g00353	mRNA	TpMuguga_04g00353	NW_876246.1	685329	687206	R	TpMuguga_04g00353	complement(685329..687206)	Theileria parva strain Muguga	3500960
TpMuguga_04g00354	mRNA	TpMuguga_04g00354	NW_876246.1	687399	693878	D	TpMuguga_04g00354	join(<687399..692695,692761..693878)	Theileria parva strain Muguga	3500961
TpMuguga_04g02060	mRNA	TpMuguga_04g02060	NW_876246.1	693863	696351	D	TpMuguga_04g02060	join(693863..695292,695336..695375,695416..695829,695900..696196,696228..696351)	Theileria parva strain Muguga	3500963
TpMuguga_04g00357	mRNA	TpMuguga_04g00357	NW_876246.1	696385	698320	R	TpMuguga_04g00357	complement(join(696385..697060,697128..697822,697903..698320))	Theileria parva strain Muguga	3500964
TpMuguga_04g00358	mRNA	snrpd3	NW_876246.1	698731	699599	D	TpMuguga_04g00358	join(698731..699090,699175..699255,699289..699599)	Theileria parva strain Muguga	3500965
TpMuguga_04g00359	mRNA	TpMuguga_04g00359	NW_876246.1	699659	703140	D	TpMuguga_04g00359	699659..703140	Theileria parva strain Muguga	3500966
TpMuguga_04g00360	mRNA	MFAP1	NW_876246.1	703236	704829	D	TpMuguga_04g00360	join(703236..703382,703451..703571,703637..703725,703756..704214,704246..704320,704354..704705,704738..704829)	Theileria parva strain Muguga	3500967
TpMuguga_04g00361	mRNA	TpMuguga_04g00361	NW_876246.1	704808	706269	R	TpMuguga_04g00361	complement(join(704808..704974,705006..705116,705167..705523,705556..705670,705742..705872,705913..706062,706100..706269))	Theileria parva strain Muguga	3501045
TpMuguga_04g00362	mRNA	gad-1	NW_876246.1	706290	708151	D	TpMuguga_04g00362	706290..708151	Theileria parva strain Muguga	3501046
TpMuguga_04g00363	mRNA	XPO7	NW_876246.1	708574	712476	D	TpMuguga_04g00363	join(708574..709260,709351..710119,710191..710667,710825..712476)	Theileria parva strain Muguga	3501047
TpMuguga_04g00364	mRNA	TpMuguga_04g00364	NW_876246.1	712554	716349	R	TpMuguga_04g00364	complement(join(712554..712751,712804..712866,712897..712998,713071..713394,713499..713830,713873..714149,714203..714478,714574..714732,714768..714890,714961..>716349))	Theileria parva strain Muguga	3501048
TpMuguga_04g00365	mRNA	prepl	NW_876246.1	716527	719077	R	TpMuguga_04g00365	complement(join(<716527..717110,717167..719077))	Theileria parva strain Muguga	3501049
TpMuguga_04g00366	mRNA	PAA1	NW_876246.1	719053	720403	D	TpMuguga_04g00366	join(719053..719361,719395..719507,719569..719650,719748..719903,719968..720050,720083..>720403)	Theileria parva strain Muguga	3501050
TpMuguga_04g00367	mRNA	YARS	NW_876246.1	720460	722093	R	TpMuguga_04g00367	complement(join(720460..720577,720609..720742,720773..720908,720940..721078,721108..721266,721305..721394,721429..721496,721554..722093))	Theileria parva strain Muguga	3501161
TpMuguga_04g00368	mRNA	RPN10	NW_876246.1	722179	723465	R	TpMuguga_04g00368	complement(join(722179..722267,722300..722577,722656..722868,722917..722980,723011..723465))	Theileria parva strain Muguga	3501162
TpMuguga_04g00369	mRNA	XRN3	NW_876246.1	723608	727214	D	TpMuguga_04g00369	join(723608..724049,724082..724184,724218..727214)	Theileria parva strain Muguga	3501163
TpMuguga_04g02085	mRNA	TpMuguga_04g02085	NW_876246.1	726804	727148	D	TpMuguga_04g02085	<726804..>727148	Theileria parva strain Muguga	86047807
TpMuguga_04g00370	mRNA	ncapd2	NW_876246.1	727475	732789	D	TpMuguga_04g00370	<727475..732789	Theileria parva strain Muguga	3501164
TpMuguga_04g00371	mRNA	TpMuguga_04g00371	NW_876246.1	732820	733625	D	TpMuguga_04g00371	join(732820..732932,732964..733272,733360..733625)	Theileria parva strain Muguga	3501165
TpMuguga_04g00372	mRNA	TpMuguga_04g00372	NW_876246.1	733648	735903	R	TpMuguga_04g00372	complement(join(733648..735756,735794..735903))	Theileria parva strain Muguga	3501166
TpMuguga_04g00373	mRNA	TpMuguga_04g00373	NW_876246.1	735971	737959	D	TpMuguga_04g00373	join(735971..736673,736782..737774,737844..737959)	Theileria parva strain Muguga	3501286
TpMuguga_04g00374	mRNA	TBC1D22B	NW_876246.1	737971	739610	R	TpMuguga_04g00374	complement(join(737971..738034,738101..738477,738538..738644,738703..738760,738790..738915,739023..739076,739108..739185,739216..739298,739367..739610))	Theileria parva strain Muguga	3501287
TpMuguga_04g00375	mRNA	TpMuguga_04g00375	NW_876246.1	739710	740781	D	TpMuguga_04g00375	739710..740781	Theileria parva strain Muguga	3501288
TpMuguga_04g02675	mRNA	TpMuguga_04g02675	NW_876246.1	740682	746490	R	TpMuguga_04g02675	complement(join(740682..740783,740850..740951,740983..741068,741160..741332,741401..741550,741614..741759,741842..742137,742231..742318,742351..746490))	Theileria parva strain Muguga	3501289
TpMuguga_04g00379	mRNA	TpMuguga_04g00379	NW_876246.1	746859	747502	D	TpMuguga_04g00379	join(<746859..746924,746951..747165,747199..>747502)	Theileria parva strain Muguga	3501168
TpMuguga_04g00380	mRNA	rfc5	NW_876246.1	747529	748878	R	TpMuguga_04g00380	complement(join(<747529..748424,748500..748878))	Theileria parva strain Muguga	3501169
TpMuguga_04g00381	mRNA	TpMuguga_04g00381	NW_876246.1	748938	750474	D	TpMuguga_04g00381	join(748938..749016,749081..749176,749207..749241,749291..749380,749431..>750474)	Theileria parva strain Muguga	3501170
TpMuguga_04g00382	mRNA	TpMuguga_04g00382	NW_876246.1	750537	752003	D	TpMuguga_04g00382	<750537..>752003	Theileria parva strain Muguga	3501171
TpMuguga_04g00383	mRNA	GPD	NW_876246.1	752098	753351	R	TpMuguga_04g00383	complement(752098..753351)	Theileria parva strain Muguga	3501172
TpMuguga_04g00384	mRNA	CYC1	NW_876246.1	753633	755443	R	TpMuguga_04g00384	complement(join(753633..754839,754983..755443))	Theileria parva strain Muguga	3501173
TpMuguga_04g00385	mRNA	Zmat2	NW_876246.1	755517	756565	D	TpMuguga_04g00385	755517..756565	Theileria parva strain Muguga	3501174
TpMuguga_04g00386	mRNA	SYP41	NW_876246.1	756526	758029	R	TpMuguga_04g00386	complement(join(756526..756620,756675..756827,756888..756965,757070..757156,757230..757627,757727..758029))	Theileria parva strain Muguga	3501194
TpMuguga_04g00388	mRNA	rpl16c	NW_876246.1	758054	758956	R	TpMuguga_04g00388	complement(join(758054..758246,758318..758595,758660..758798,758884..758956))	Theileria parva strain Muguga	3501195
TpMuguga_04g00387	mRNA	PI4KA1	NW_876246.1	759318	763435	D	TpMuguga_04g00387	join(759318..761535,761602..761687,761823..762720,762857..763167,763272..763435)	Theileria parva strain Muguga	3501196
TpMuguga_04g00389	mRNA	argS	NW_876246.1	763441	765986	R	TpMuguga_04g00389	complement(join(763441..763627,763728..764130,764217..764387,764491..765105,765175..765266,765329..765428,765460..765591,765684..765813,765898..765986))	Theileria parva strain Muguga	3501197
TpMuguga_04g00390	mRNA	TpMuguga_04g00390	NW_876246.1	766066	767087	R	TpMuguga_04g00390	complement(join(766066..766161,766224..766345,766412..766498,766640..766655,766688..767087))	Theileria parva strain Muguga	3501198
TpMuguga_04g00391	mRNA	TpMuguga_04g00391	NW_876246.1	767342	767878	D	TpMuguga_04g00391	<767342..>767878	Theileria parva strain Muguga	3501132
TpMuguga_04g00392	mRNA	rplN	NW_876246.1	767908	768279	D	TpMuguga_04g00392	<767908..>768279	Theileria parva strain Muguga	3501133
TpMuguga_04g00393	mRNA	SR33	NW_876246.1	768423	769240	R	TpMuguga_04g00393	complement(join(<768423..768852,768933..>769240))	Theileria parva strain Muguga	3501134
TpMuguga_04g00394	mRNA	rpl22	NW_876246.1	769627	770292	R	TpMuguga_04g00394	complement(join(<769627..769746,769832..769963,770037..770292))	Theileria parva strain Muguga	3501135
TpMuguga_04g00395	mRNA	Psmd6	NW_876246.1	770775	772584	D	TpMuguga_04g00395	join(770775..770842,770873..770935,771010..771092,771156..771361,771435..771580,771644..771735,771767..771861,771932..772073,772104..772272,772363..772483,772513..772584)	Theileria parva strain Muguga	3501136
TpMuguga_04g00396	mRNA	eif3m	NW_876246.1	772609	774400	R	TpMuguga_04g00396	complement(join(772609..773170,773273..773436,773479..773772,773907..774400))	Theileria parva strain Muguga	3501137
TpMuguga_04g00397	mRNA	TpMuguga_04g00397	NW_876246.1	774444	775892	R	TpMuguga_04g00397	complement(join(774444..774701,774814..775067,775187..775892))	Theileria parva strain Muguga	3500968
TpMuguga_04g00398	mRNA	TpMuguga_04g00398	NW_876246.1	776296	780890	R	TpMuguga_04g00398	complement(join(<776296..777175,777377..780413,780467..780539,780617..780697,780796..780890))	Theileria parva strain Muguga	3500970
TpMuguga_04g00399	mRNA	TpMuguga_04g00399	NW_876246.1	781075	782540	R	TpMuguga_04g00399	complement(join(781075..781207,781292..781700,781782..782540))	Theileria parva strain Muguga	3500971
TpMuguga_04g00400	mRNA	MRD1	NW_876246.1	782954	785288	R	TpMuguga_04g00400	complement(<782954..785288)	Theileria parva strain Muguga	3500972
TpMuguga_04g00401	mRNA	TpMuguga_04g00401	NW_876246.1	785312	787228	D	TpMuguga_04g00401	join(785312..785427,785507..785815,785850..785924,785985..786040,786071..786111,786140..786280,786337..786565,786592..787228)	Theileria parva strain Muguga	3500973
TpMuguga_04g02050	mRNA	TpMuguga_04g02050	NW_876246.1	786714	787228	D	TpMuguga_04g02050	<786714..787228	Theileria parva strain Muguga	86047803
TpMuguga_04g00402	mRNA	Dnajc2	NW_876246.1	787236	790439	R	TpMuguga_04g00402	complement(join(787236..787304,787457..787576,787609..788266,788438..788530,788565..788654,788767..789021,789155..789278,789450..789941,790075..790439))	Theileria parva strain Muguga	3500974
TpMuguga_04g00403	mRNA	TpMuguga_04g00403	NW_876246.1	790659	791231	R	TpMuguga_04g00403	complement(<790659..>791231)	Theileria parva strain Muguga	3500806
TpMuguga_04g00404	mRNA	HTB1	NW_876246.1	791861	792184	R	TpMuguga_04g00404	complement(<791861..>792184)	Theileria parva strain Muguga	3500807
TpMuguga_04g00405	mRNA	TpMuguga_04g00405	NW_876246.1	793084	795578	D	TpMuguga_04g00405	join(793084..793638,793947..>795578)	Theileria parva strain Muguga	3500808
TpMuguga_04g02490	mRNA	TpMuguga_04g02490	NW_876246.1	795694	796217	R	TpMuguga_04g02490	complement(<795694..796217)	Theileria parva strain Muguga	86047841
TpMuguga_04g00406	mRNA	TpMuguga_04g00406	NW_876246.1	796233	797288	R	TpMuguga_04g00406	complement(796233..797288)	Theileria parva strain Muguga	3500809
TpMuguga_04g00407	mRNA	TpMuguga_04g00407	NW_876246.1	797811	799250	R	TpMuguga_04g00407	complement(<797811..>799250)	Theileria parva strain Muguga	3500810
TpMuguga_04g00408	mRNA	TpMuguga_04g00408	NW_876246.1	799466	800210	R	TpMuguga_04g00408	complement(<799466..800210)	Theileria parva strain Muguga	3500811
TpMuguga_04g00409	mRNA	smc2	NW_876246.1	800429	804175	R	TpMuguga_04g00409	complement(800429..>804175)	Theileria parva strain Muguga	3500812
TpMuguga_04g00410	mRNA	TpMuguga_04g00410	NW_876246.1	804523	807035	D	TpMuguga_04g00410	join(804523..805032,805256..805608,805889..805996,806095..806223,806321..806480,806684..807035)	Theileria parva strain Muguga	3500813
TpMuguga_04g00411	mRNA	TpMuguga_04g00411	NW_876246.1	807100	807694	D	TpMuguga_04g00411	join(<807100..807135,807205..807291,807323..807375,807598..>807694)	Theileria parva strain Muguga	3500698
TpMuguga_04g00412	mRNA	TpMuguga_04g00412	NW_876246.1	807942	809795	D	TpMuguga_04g00412	join(<807942..808017,808083..808176,808207..808274,809099..809310,809382..809795)	Theileria parva strain Muguga	3500699
TpMuguga_04g00413	mRNA	TpMuguga_04g00413	NW_876246.1	809920	810975	D	TpMuguga_04g00413	join(809920..810201,810499..810975)	Theileria parva strain Muguga	3500700
TpMuguga_04g00414	mRNA	TpMuguga_04g00414	NW_876246.1	810989	813546	D	TpMuguga_04g00414	810989..813546	Theileria parva strain Muguga	3500701
TpMuguga_04g00415	mRNA	TpMuguga_04g00415	NW_876246.1	814107	815232	R	TpMuguga_04g00415	complement(join(814107..814607,814740..814915,814946..815232))	Theileria parva strain Muguga	3500702
TpMuguga_04g00416	mRNA	ELAC2	NW_876246.1	815155	818763	D	TpMuguga_04g00416	join(815155..815536,815859..816053,816122..816392,816535..816678,816708..816966,817007..817062,817102..817143,817173..817308,817490..817583,817631..817754,817802..817915,817946..818078,818108..818241,818271..818763)	Theileria parva strain Muguga	3500703
TpMuguga_04g02055	mRNA	TpMuguga_04g02055	NW_876246.1	819095	819604	R	TpMuguga_04g02055	complement(join(819095..819322,819351..819604))	Theileria parva strain Muguga	86047804
TpMuguga_04g02535	mRNA	TpMuguga_04g02535	NW_876246.1	820143	825361	D	TpMuguga_04g02535	join(<820143..820420,820574..820674,820720..820937,821069..821261,821449..821553,821590..821703,821813..821966,822136..822231,822339..822667,822783..823012,823073..823223,823337..823755,823863..823957,824007..824127,824159..824259,824544..824742,824890..825011,825086..825155,825186..825361)	Theileria parva strain Muguga	3500599
TpMuguga_04g00420	mRNA	TpMuguga_04g00420	NW_876246.1	825441	828329	R	TpMuguga_04g00420	complement(join(<825441..825638,825793..825915,826130..826183,826214..826479,826734..827216,827564..827694,827756..827831,827990..>828329))	Theileria parva strain Muguga	3500602
TpMuguga_04g00421	mRNA	RPS3A	NW_876246.1	829001	829905	D	TpMuguga_04g00421	join(829001..829220,829250..829905)	Theileria parva strain Muguga	3500615
TpMuguga_04g00422	mRNA	TpMuguga_04g00422	NW_876246.1	829926	831602	R	TpMuguga_04g00422	complement(join(829926..830023,830053..830101,830132..830224,830255..830336,830367..830383,830414..830541,830652..830714,830803..830891,830920..831072,831150..831201,831230..831602))	Theileria parva strain Muguga	3500616
TpMuguga_04g00423	mRNA	BSU1	NW_876246.1	831688	836123	D	TpMuguga_04g00423	join(831688..831899,832058..832242,832431..832570,832627..832747,832921..833092,833165..833228,833390..833456,833487..833595,833811..834028,834232..834432,834529..834586,834617..835107,835226..835395,835425..835492,835700..835817,835980..836123)	Theileria parva strain Muguga	3500617
TpMuguga_04g00424	mRNA	PSMD1	NW_876246.1	836197	840440	D	TpMuguga_04g00424	join(<836197..836423,836521..836780,836851..837410,837577..837750,837836..837932,837986..838126,838222..838311,838349..838470,838503..838601,838729..838999,839083..839246,839288..839435,839573..839825,839924..840440)	Theileria parva strain Muguga	3500618
TpMuguga_04g00425	mRNA	TpMuguga_04g00425	NW_876246.1	840818	842360	R	TpMuguga_04g00425	complement(<840818..842360)	Theileria parva strain Muguga	3500557
TpMuguga_04g00426	mRNA	TpMuguga_04g00426	NW_876246.1	842465	845200	R	TpMuguga_04g00426	complement(842465..845200)	Theileria parva strain Muguga	3500558
TpMuguga_04g00427	mRNA	TpMuguga_04g00427	NW_876246.1	845515	848205	R	TpMuguga_04g00427	complement(845515..>848205)	Theileria parva strain Muguga	3500559
TpMuguga_04g00428	mRNA	TpMuguga_04g00428	NW_876246.1	848623	850801	R	TpMuguga_04g00428	complement(join(848623..849575,849749..850801))	Theileria parva strain Muguga	3500560
TpMuguga_04g00429	mRNA	TpMuguga_04g00429	NW_876246.1	850295	851467	D	TpMuguga_04g00429	join(850295..850403,850660..850885,851055..851119,851231..851317,851381..851467)	Theileria parva strain Muguga	3500561
TpMuguga_04g00430	mRNA	NIP7	NW_876246.1	851609	852569	D	TpMuguga_04g00430	join(851609..851709,851772..851861,851963..852008,852127..852276,852309..852458,852489..852569)	Theileria parva strain Muguga	3500562
TpMuguga_04g00431	mRNA	TpMuguga_04g00431	NW_876246.1	852618	854724	D	TpMuguga_04g00431	join(852618..853445,853477..853541,853573..853626,853657..854215,854249..854458,854566..854724)	Theileria parva strain Muguga	3500563
TpMuguga_04g00432	mRNA	TpMuguga_04g00432	NW_876246.1	854750	856897	D	TpMuguga_04g00432	join(854750..855310,855373..855557,855592..855683,855752..855797,855830..856897)	Theileria parva strain Muguga	3500570
TpMuguga_04g00433	mRNA	TpMuguga_04g00433	NW_876246.1	856921	858605	R	TpMuguga_04g00433	complement(join(856921..857040,857071..857372,857494..858605))	Theileria parva strain Muguga	3500571
TpMuguga_04g00434	mRNA	TpMuguga_04g00434	NW_876246.1	858689	860230	D	TpMuguga_04g00434	join(858689..858918,858950..859109,859144..859263,859292..859358,859427..859509,859541..859675,859749..860230)	Theileria parva strain Muguga	3500572
TpMuguga_04g00435	mRNA	TpMuguga_04g00435	NW_876246.1	860389	865980	D	TpMuguga_04g00435	join(<860389..860904,860937..864477,864623..>865980)	Theileria parva strain Muguga	3500573
TpMuguga_04g00436	mRNA	atp6v0d1	NW_876246.1	865992	867329	D	TpMuguga_04g00436	join(865992..866251,866285..866338,866378..866565,866627..867054,867087..>867329)	Theileria parva strain Muguga	3500574
TpMuguga_04g00437	mRNA	p104	NW_876246.1	867680	870822	D	TpMuguga_04g00437	867680..870822	Theileria parva strain Muguga	3500484
TpMuguga_04g00439	mRNA	TpMuguga_04g00439	NW_876246.1	870717	872988	R	TpMuguga_04g00439	complement(join(870717..871209,871448..871601,871631..871692,871796..871876,871908..871968,872002..872599,872634..>872988))	Theileria parva strain Muguga	3500485
TpMuguga_04g00438	mRNA	PSMD3	NW_876246.1	873037	875137	D	TpMuguga_04g00438	join(<873037..873531,873618..873695,873767..873825,873856..873979,874028..874097,874128..874237,874268..874381,874412..874573,874609..874734,874809..874901,874973..875053,875084..875137)	Theileria parva strain Muguga	3500486
TpMuguga_04g00440	mRNA	TpMuguga_04g00440	NW_876246.1	875298	877544	D	TpMuguga_04g00440	<875298..877544	Theileria parva strain Muguga	3500487
TpMuguga_04g02515	mRNA	TpMuguga_04g02515	NW_876246.1	877662	878899	R	TpMuguga_04g02515	complement(<877662..878899)	Theileria parva strain Muguga	86047842
TpMuguga_04g00441	mRNA	VAPB	NW_876246.1	878987	880539	D	TpMuguga_04g00441	878987..880539	Theileria parva strain Muguga	3500488
TpMuguga_04g00442	mRNA	TpMuguga_04g00442	NW_876246.1	880604	882248	R	TpMuguga_04g00442	complement(join(880604..880749,880896..880978,881079..882248))	Theileria parva strain Muguga	3500489
TpMuguga_04g00443	mRNA	TpMuguga_04g00443	NW_876246.1	882318	884516	D	TpMuguga_04g00443	join(882318..883108,883142..883275,883309..883357,883388..883407,883511..883897,883938..884101,884132..884516)	Theileria parva strain Muguga	3500586
TpMuguga_04g00444	mRNA	TpMuguga_04g00444	NW_876246.1	884107	885514	R	TpMuguga_04g00444	complement(join(884107..884261,884297..884425,884479..884567,884598..884654,884685..884784,884813..884972,885039..885124,885186..885514))	Theileria parva strain Muguga	3500587
TpMuguga_04g00445	mRNA	TpMuguga_04g00445	NW_876246.1	885961	886953	R	TpMuguga_04g00445	complement(join(<885961..886593,886627..>886953))	Theileria parva strain Muguga	3500588
TpMuguga_04g00446	mRNA	CRK3	NW_876246.1	887166	888209	R	TpMuguga_04g00446	complement(<887166..>888209)	Theileria parva strain Muguga	3500589
TpMuguga_04g02575	mRNA	TpMuguga_04g02575	NW_876246.1	888877	889421	D	TpMuguga_04g02575	join(<888877..888979,889039..889113,889159..889421)	Theileria parva strain Muguga	86047844
TpMuguga_04g00447	mRNA	TpMuguga_04g00447	NW_876246.1	889229	890486	R	TpMuguga_04g00447	complement(889229..890486)	Theileria parva strain Muguga	3500591
TpMuguga_04g00448	mRNA	TpMuguga_04g00448	NW_876246.1	890957	894148	D	TpMuguga_04g00448	join(890957..891952,892007..892449,892505..892598,892662..892799,892882..893487,893562..893681,893721..893804,893957..894148)	Theileria parva strain Muguga	3500592
TpMuguga_04g00449	mRNA	TpMuguga_04g00449	NW_876246.1	894199	895822	D	TpMuguga_04g00449	join(894199..894750,894811..895332,895385..895822)	Theileria parva strain Muguga	3501390
TpMuguga_04g00450	mRNA	TpMuguga_04g00450	NW_876246.1	895921	897786	D	TpMuguga_04g00450	join(895921..896716,896746..896966,897009..897065,897106..897157,897194..897268,897302..897419,897447..897786)	Theileria parva strain Muguga	3501391
TpMuguga_04g02505	mRNA	TpMuguga_04g02505	NW_876246.1	897856	898436	D	TpMuguga_04g02505	join(897856..898124,898178..898271,898332..>898436)	Theileria parva strain Muguga	3501392
TpMuguga_04g02510	mRNA	TpMuguga_04g02510	NW_876246.1	898436	899572	D	TpMuguga_04g02510	join(<898436..898458,898523..898639,898695..898836,898874..899007,899038..899125,899159..899572)	Theileria parva strain Muguga	3501393
TpMuguga_04g00453	mRNA	XRCC3	NW_876246.1	899722	901250	D	TpMuguga_04g00453	join(899722..899998,900131..900227,900259..900362,900393..900443,900508..900566,900618..900714,900756..900809,900850..900916,900946..901250)	Theileria parva strain Muguga	3501395
TpMuguga_04g00454	mRNA	tbc1d24	NW_876246.1	901251	905487	D	TpMuguga_04g00454	join(901251..901585,901691..901785,901896..902007,902038..902083,902140..902592,902679..903612,903732..903858,903981..904643,904788..904980,905152..905487)	Theileria parva strain Muguga	3500865
TpMuguga_04g00455	mRNA	TpMuguga_04g00455	NW_876246.1	905518	907354	R	TpMuguga_04g00455	complement(join(905518..906402,906535..>907354))	Theileria parva strain Muguga	3500866
TpMuguga_04g00456	mRNA	TpMuguga_04g00456	NW_876246.1	907668	908969	R	TpMuguga_04g00456	complement(join(<907668..907806,907871..908172,908263..908969))	Theileria parva strain Muguga	3500867
TpMuguga_04g00457	mRNA	BCE2	NW_876246.1	909464	911078	D	TpMuguga_04g00457	join(909464..909711,909803..910089,910187..910252,910307..911078)	Theileria parva strain Muguga	3500868
TpMuguga_04g00458	mRNA	TpMuguga_04g00458	NW_876246.1	911206	913546	R	TpMuguga_04g00458	complement(join(911206..913153,913249..913546))	Theileria parva strain Muguga	3500869
TpMuguga_04g00459	mRNA	AKR1	NW_876246.1	913628	916231	R	TpMuguga_04g00459	complement(join(913628..914046,914133..914558,914617..914686,914754..915249,915347..915769,915870..916231))	Theileria parva strain Muguga	3501079
TpMuguga_04g00460	mRNA	PAH2	NW_876246.1	916587	918973	D	TpMuguga_04g00460	join(916587..916907,916968..917189,917275..917565,917625..917981,918048..918592,918683..918973)	Theileria parva strain Muguga	3501080
TpMuguga_04g02440	mRNA	rpb6	NW_876246.1	918986	919642	R	TpMuguga_04g02440	complement(join(918986..919374,919460..919642))	Theileria parva strain Muguga	86047837
TpMuguga_04g02445	mRNA	PVA13	NW_876246.1	919729	920818	R	TpMuguga_04g02445	complement(join(919729..919969,920136..920818))	Theileria parva strain Muguga	3501081
TpMuguga_04g00462	mRNA	TpMuguga_04g00462	NW_876246.1	920895	923181	R	TpMuguga_04g00462	complement(join(<920895..920948,921116..921967,922036..922118,922176..922318,922370..922705,922862..923181))	Theileria parva strain Muguga	3501082
TpMuguga_04g00463	mRNA	TpMuguga_04g00463	NW_876246.1	923425	926423	R	TpMuguga_04g00463	complement(join(<923425..923532,923566..923662,923735..923802,923861..923998,924079..924331,924388..924659,924693..924772,924806..924934,924967..925042,925122..925190,925244..925379,925450..925559,925597..925696,925729..925974,926036..926133,926265..926423))	Theileria parva strain Muguga	3501083
TpMuguga_04g00464	mRNA	TPI	NW_876246.1	926583	927542	D	TpMuguga_04g00464	join(<926583..926697,926819..927267,927354..>927542)	Theileria parva strain Muguga	3501262
TpMuguga_04g00465	mRNA	CWC2	NW_876246.1	927750	929114	D	TpMuguga_04g00465	join(927750..927852,927940..>929114)	Theileria parva strain Muguga	3501263
TpMuguga_04g00466	mRNA	TpMuguga_04g00466	NW_876246.1	929203	929800	R	TpMuguga_04g00466	complement(join(929203..929439,929495..929800))	Theileria parva strain Muguga	3501264
TpMuguga_04g02580	mRNA	TpMuguga_04g02580	NW_876246.1	929944	933377	D	TpMuguga_04g02580	join(<929944..930189,930225..930460,930491..930524,930589..930676,930732..930889,930923..931063,931100..932884,932950..933092,933125..933221,933252..>933377)	Theileria parva strain Muguga	3501266
TpMuguga_04g00469	mRNA	Pfdn2	NW_876246.1	933567	934131	D	TpMuguga_04g00469	join(<933567..933673,933794..933917,934008..934131)	Theileria parva strain Muguga	3501267
TpMuguga_04g00470	mRNA	lysS	NW_876246.1	934207	936323	R	TpMuguga_04g00470	complement(join(<934207..935001,935067..>936323))	Theileria parva strain Muguga	3501090
TpMuguga_04g00471	mRNA	rpc19	NW_876246.1	936430	936949	D	TpMuguga_04g00471	join(936430..936711,936788..936949)	Theileria parva strain Muguga	3501091
TpMuguga_04g00472	mRNA	TpMuguga_04g00472	NW_876246.1	937184	940462	D	TpMuguga_04g00472	join(937184..937480,937570..937726,937809..937898,937930..938155,938184..938334,938384..938737,938772..939287,939355..939453,939558..940157,940223..>940462)	Theileria parva strain Muguga	3501092
TpMuguga_04g00473	mRNA	pqqL	NW_876246.1	940552	944922	R	TpMuguga_04g00473	complement(join(940552..941027,941093..941196,941245..941273,941305..941771,941836..942804,942840..942919,942959..943549,943583..943626,943658..943772,943802..943920,943963..944093,944126..944282,944327..944526,944559..944597,944641..944922))	Theileria parva strain Muguga	3501093
TpMuguga_04g00474	mRNA	PP2AA3	NW_876246.1	945017	947511	D	TpMuguga_04g00474	join(945017..945436,945534..945688,945717..945837,945867..945957,945990..946293,946325..946650,946684..947089,947137..947208,947238..947338,947406..>947511)	Theileria parva strain Muguga	3501094
TpMuguga_04g00475	mRNA	DIMT1	NW_876246.1	947599	949174	D	TpMuguga_04g00475	join(<947599..947710,947784..947987,948036..948315,948386..948519,948599..948669,948702..948866,948898..949042,949119..>949174)	Theileria parva strain Muguga	3500907
TpMuguga_04g00476	mRNA	TpMuguga_04g00476	NW_876246.1	949091	949797	R	TpMuguga_04g00476	complement(join(949091..949391,949494..949797))	Theileria parva strain Muguga	3500908
TpMuguga_04g00477	mRNA	TpMuguga_04g00477	NW_876246.1	949890	952776	R	TpMuguga_04g00477	complement(join(949890..950041,950135..951301,951340..951785,951852..951913,951944..952005,952056..952398,952464..952561,952609..952776))	Theileria parva strain Muguga	3500909
TpMuguga_04g00478	mRNA	MCA1	NW_876246.1	952940	956266	R	TpMuguga_04g00478	complement(<952940..>956266)	Theileria parva strain Muguga	3500910
TpMuguga_04g00479	mRNA	TpMuguga_04g00479	NW_876246.1	956681	957925	R	TpMuguga_04g00479	complement(join(<956681..956794,956989..957096,957150..957263,957401..957468,957784..>957925))	Theileria parva strain Muguga	3500911
TpMuguga_04g00480	mRNA	TpMuguga_04g00480	NW_876246.1	958920	959492	R	TpMuguga_04g00480	complement(join(<958920..958993,959026..959190,959232..959357,959414..>959492))	Theileria parva strain Muguga	3500799
TpMuguga_04g00481	mRNA	RPL44	NW_876246.1	959908	960459	D	TpMuguga_04g00481	join(959908..959989,960055..960279,960310..960459)	Theileria parva strain Muguga	3500800
TpMuguga_04g02095	mRNA	TpMuguga_04g02095	NW_876246.1	960481	961011	R	TpMuguga_04g02095	complement(join(960481..960697,960732..961011))	Theileria parva strain Muguga	86047809
TpMuguga_04g00482	mRNA	TpMuguga_04g00482	NW_876246.1	961086	963202	D	TpMuguga_04g00482	join(961086..961760,961791..963202)	Theileria parva strain Muguga	3500801
TpMuguga_04g00483	mRNA	TpMuguga_04g00483	NW_876246.1	963345	966608	R	TpMuguga_04g00483	complement(join(963345..963650,963716..966608))	Theileria parva strain Muguga	3500802
TpMuguga_04g00484	mRNA	TpMuguga_04g00484	NW_876246.1	966585	969638	R	TpMuguga_04g00484	complement(join(966585..968292,968326..968828,968940..969322,969395..969638))	Theileria parva strain Muguga	3500803
TpMuguga_04g00485	mRNA	TpMuguga_04g00485	NW_876246.1	969639	973202	R	TpMuguga_04g00485	complement(join(969639..970682,970715..970876,970936..971244,971287..971787,971819..971880,971910..971996,972028..972331,972361..972442,972473..972581,972613..972765,972817..973202))	Theileria parva strain Muguga	3500804
TpMuguga_04g00486	mRNA	TpMuguga_04g00486	NW_876246.1	973498	974197	D	TpMuguga_04g00486	join(<973498..973789,973819..973886,973937..974048,974085..974197)	Theileria parva strain Muguga	3500631
TpMuguga_04g00487	mRNA	TpMuguga_04g00487	NW_876246.1	974198	975659	D	TpMuguga_04g00487	join(974198..974407,974444..975048,975091..975240,975271..975659)	Theileria parva strain Muguga	3500632
TpMuguga_04g02215	mRNA	TpMuguga_04g02215	NW_876246.1	975662	977660	D	TpMuguga_04g02215	join(975662..975989,976027..976161,976192..976235,976265..976341,976372..976545,976576..976633,976672..976753,976785..976845,976875..976967,976998..977050,977079..977248,977280..977548,977580..977660)	Theileria parva strain Muguga	3500633
TpMuguga_04g00491	mRNA	Sprtn	NW_876246.1	977578	978762	D	TpMuguga_04g00491	join(977578..977967,977996..978064,978133..978207,978238..978351,978384..978465,978496..978582,978612..978762)	Theileria parva strain Muguga	3500636
TpMuguga_04g00492	mRNA	TpMuguga_04g00492	NW_876246.1	978763	980074	R	TpMuguga_04g00492	complement(join(978763..979947,979977..980074))	Theileria parva strain Muguga	3500523
TpMuguga_04g00493	mRNA	rpl6	NW_876246.1	980588	981491	D	TpMuguga_04g00493	980588..981491	Theileria parva strain Muguga	3500524
TpMuguga_04g00494	mRNA	FTSH11	NW_876246.1	981586	983947	R	TpMuguga_04g00494	complement(join(981586..981866,981954..982079,982112..983140,983170..983326,983358..983458,983499..983947))	Theileria parva strain Muguga	3500525
TpMuguga_04g00495	mRNA	TpMuguga_04g00495	NW_876246.1	983988	986030	R	TpMuguga_04g00495	complement(join(983988..984122,984155..984294,984325..984505,984535..984606,984636..984788,984818..985100,985131..985328,985357..986030))	Theileria parva strain Muguga	3500526
TpMuguga_04g00496	mRNA	KRI1	NW_876246.1	986122	988138	D	TpMuguga_04g00496	join(986122..986358,986391..986575,986607..986700,986731..986870,986902..986944,986977..987091,987123..987185,987268..988138)	Theileria parva strain Muguga	3500527
TpMuguga_04g00497	mRNA	TpMuguga_04g00497	NW_876246.1	988140	989607	R	TpMuguga_04g00497	complement(join(988140..988480,988519..988756,988787..988850,988890..989003,989047..989146,989178..989296,989327..989389,989430..989607))	Theileria parva strain Muguga	3500939
TpMuguga_04g00499	mRNA	TpMuguga_04g00499	NW_876246.1	989864	991267	D	TpMuguga_04g00499	join(<989864..989929,989963..990271,990303..990600,990631..990766,990799..990935,990968..991098,991128..991267)	Theileria parva strain Muguga	3500941
TpMuguga_04g00500	mRNA	SMC5	NW_876246.1	991587	994923	D	TpMuguga_04g00500	join(<991587..992348,992381..994923)	Theileria parva strain Muguga	3500942
TpMuguga_04g00501	mRNA	RECQL4A	NW_876246.1	995288	998603	D	TpMuguga_04g00501	995288..998603	Theileria parva strain Muguga	3500943
TpMuguga_04g02225	mRNA	TpMuguga_04g02225	NW_876246.1	998476	999143	R	TpMuguga_04g02225	complement(join(<998476..998553,998664..998718,998767..998926,998962..999013,999045..>999143))	Theileria parva strain Muguga	86047821
TpMuguga_04g00502	mRNA	TpMuguga_04g00502	NW_876246.1	999194	1001812	R	TpMuguga_04g00502	complement(join(<999194..999217,999255..999355,999387..999810,999840..1000016,1000046..1000119,1000149..1000638,1000670..1000873,1000904..1001094,1001126..1001310,1001344..1001455,1001498..1001603,1001637..1001812))	Theileria parva strain Muguga	3500944
TpMuguga_04g00503	mRNA	TpMuguga_04g00503	NW_876246.1	1001863	1002676	R	TpMuguga_04g00503	complement(1001863..1002676)	Theileria parva strain Muguga	3500993
TpMuguga_04g00504	mRNA	TpMuguga_04g00504	NW_876246.1	1002694	1004574	R	TpMuguga_04g00504	complement(join(1002694..1002944,1002983..1003143,1003175..1003269,1003302..1003368,1003398..1003543,1003576..1003669,1003699..1004079,1004110..1004204,1004236..1004574))	Theileria parva strain Muguga	3500994
TpMuguga_04g00505	mRNA	TpMuguga_04g00505	NW_876246.1	1004696	1005406	R	TpMuguga_04g00505	complement(join(1004696..1004812,1004843..1005102,1005196..1005406))	Theileria parva strain Muguga	3500995
TpMuguga_04g00506	mRNA	CPK1	NW_876246.1	1005666	1008543	D	TpMuguga_04g00506	join(<1005666..1005843,1005893..1006557,1006588..1006675,1006706..1006785,1006817..1006946,1006976..1007210,1007240..1007454,1007484..1007624,1007653..1007891,1007925..1008171,1008201..1008277,1008308..1008427,1008481..1008543)	Theileria parva strain Muguga	3500996
TpMuguga_04g00507	mRNA	TpMuguga_04g00507	NW_876246.1	1008758	1013443	D	TpMuguga_04g00507	<1008758..>1013443	Theileria parva strain Muguga	3500997
TpMuguga_04g00508	mRNA	TpMuguga_04g00508	NW_876246.1	1013707	1015700	D	TpMuguga_04g00508	join(<1013707..1013820,1013908..1015265,1015296..1015399,1015430..1015575,1015608..>1015700)	Theileria parva strain Muguga	3500998
TpMuguga_04g02520	mRNA	MCM9	NW_876246.1	1015802	1019064	D	TpMuguga_04g02520	join(1015802..1016888,1016919..1017047,1017077..1017158,1017222..1017380,1017413..1017504,1017538..1017672,1017703..1017831,1017866..1017973,1018005..1018195,1018226..1018742,1018775..>1019064)	Theileria parva strain Muguga	3500892
TpMuguga_04g02525	mRNA	TpMuguga_04g02525	NW_876246.1	1019146	1021442	D	TpMuguga_04g02525	join(1019146..1019330,1019365..1019590,1019623..1019777,1019809..1019845,1019876..1019945,1019977..1020073,1020103..1020206,1020237..1020384,1020416..1020473,1020504..1020602,1020632..1020725,1020755..1020991,1021021..1021125,1021159..1021267,1021319..>1021442)	Theileria parva strain Muguga	3500894
TpMuguga_04g00513	mRNA	TpMuguga_04g00513	NW_876246.1	1021450	1021997	D	TpMuguga_04g00513	join(<1021450..1021746,1021777..1021997)	Theileria parva strain Muguga	3500895
TpMuguga_04g00514	mRNA	Gspt1	NW_876246.1	1021985	1023960	R	TpMuguga_04g00514	complement(join(1021985..1022413,1022445..1022935,1022968..1023190,1023222..1023345,1023376..1023502,1023534..1023960))	Theileria parva strain Muguga	3500987
TpMuguga_04g02410	mRNA	LONRF1	NW_876246.1	1023931	1025783	D	TpMuguga_04g02410	join(1023931..1024083,1024115..1024189,1024226..1024373,1024404..1024489,1024520..1024591,1024623..1024694,1024725..1025116,1025181..1025353,1025402..1025474,1025505..1025783)	Theileria parva strain Muguga	3500988
TpMuguga_04g00517	mRNA	TpMuguga_04g00517	NW_876246.1	1025626	1027013	R	TpMuguga_04g00517	complement(join(<1025626..1025762,1025792..1025916,1025953..1026109,1026168..1026258,1026287..1026475,1026505..1026763,1026793..1027013))	Theileria parva strain Muguga	3500990
TpMuguga_04g00518	mRNA	fhkD	NW_876246.1	1027137	1030825	R	TpMuguga_04g00518	complement(join(1027137..1029816,1029849..1029977,1030007..1030165,1030196..1030393,1030425..1030825))	Theileria parva strain Muguga	3500991
TpMuguga_04g02540	mRNA	UBR3	NW_876246.1	1031187	1037990	D	TpMuguga_04g02540	join(1031187..1031396,1031444..1031536,1031568..1031639,1031670..1031919,1031950..1032034,1032067..1032135,1032168..1032216,1032249..1032420,1032450..1032625,1032658..>1037990)	Theileria parva strain Muguga	3500992
TpMuguga_04g00521	mRNA	TpMuguga_04g00521	NW_876246.1	1038107	1038842	D	TpMuguga_04g00521	join(<1038107..1038233,1038263..1038315,1038348..>1038842)	Theileria parva strain Muguga	3501069
TpMuguga_04g02485	mRNA	TpMuguga_04g02485	NW_876246.1	1039114	1046961	R	TpMuguga_04g02485	complement(join(<1039114..1039350,1039458..1039639,1039669..1041208,1041240..1041456,1041488..>1046961))	Theileria parva strain Muguga	3501070
TpMuguga_04g00524	mRNA	TpMuguga_04g00524	NW_876246.1	1047256	1049827	D	TpMuguga_04g00524	join(1047256..1049203,1049236..1049665,1049695..1049827)	Theileria parva strain Muguga	3501072
TpMuguga_04g00525	mRNA	pigm	NW_876246.1	1049942	1051855	R	TpMuguga_04g00525	complement(join(1049942..1050092,1050121..1050333,1050362..1050457,1050515..1050632,1050671..1050822,1050847..1050928,1050998..1051267,1051324..1051435,1051560..1051855))	Theileria parva strain Muguga	3501073
TpMuguga_04g00526	mRNA	TpMuguga_04g00526	NW_876246.1	1052218	1053724	D	TpMuguga_04g00526	1052218..1053724	Theileria parva strain Muguga	3501095
TpMuguga_04g00527	mRNA	TpMuguga_04g00527	NW_876246.1	1053840	1055414	D	TpMuguga_04g00527	join(1053840..1054158,1054192..1054681,1054816..1055157,1055188..1055238,1055273..1055414)	Theileria parva strain Muguga	3501096
TpMuguga_04g00528	mRNA	TpMuguga_04g00528	NW_876246.1	1055414	1058275	D	TpMuguga_04g00528	join(1055414..1055692,1055734..1056492,1056547..1057058,1057092..1057178,1057210..1057261,1057338..1057474,1057551..1057662,1057693..1058275)	Theileria parva strain Muguga	3501097
TpMuguga_04g00529	mRNA	rpoM	NW_876246.1	1058265	1058752	R	TpMuguga_04g00529	complement(join(1058265..1058505,1058548..>1058752))	Theileria parva strain Muguga	3501098
TpMuguga_04g00530	mRNA	UVH3	NW_876246.1	1058831	1061338	R	TpMuguga_04g00530	complement(<1058831..>1061338)	Theileria parva strain Muguga	3501099
TpMuguga_04g00531	mRNA	TpMuguga_04g00531	NW_876246.1	1061355	1061684	R	TpMuguga_04g00531	complement(join(<1061355..1061427,1061467..1061567,1061610..>1061684))	Theileria parva strain Muguga	3501100
TpMuguga_04g00532	mRNA	TpMuguga_04g00532	NW_876246.1	1062073	1062693	D	TpMuguga_04g00532	<1062073..>1062693	Theileria parva strain Muguga	3501366
TpMuguga_04g00533	mRNA	trm10	NW_876246.1	1062730	1063879	D	TpMuguga_04g00533	join(<1062730..1062919,1062974..1063116,1063147..1063212,1063250..1063330,1063364..1063441,1063471..1063539,1063579..1063638,1063668..1063879)	Theileria parva strain Muguga	3501367
TpMuguga_04g00534	mRNA	TpMuguga_04g00534	NW_876246.1	1063880	1064458	D	TpMuguga_04g00534	join(1063880..1064083,1064136..1064242,1064317..1064458)	Theileria parva strain Muguga	3501368
TpMuguga_04g00535	mRNA	TpMuguga_04g00535	NW_876246.1	1064659	1066138	D	TpMuguga_04g00535	join(1064659..1065378,1065444..1066138)	Theileria parva strain Muguga	3501369
TpMuguga_04g00536	mRNA	TpMuguga_04g00536	NW_876246.1	1066234	1069410	D	TpMuguga_04g00536	1066234..1069410	Theileria parva strain Muguga	3501370
TpMuguga_04g00537	mRNA	TpMuguga_04g00537	NW_876246.1	1069512	1071240	R	TpMuguga_04g00537	complement(join(<1069512..1071031,1071066..1071240))	Theileria parva strain Muguga	3501371
TpMuguga_04g00538	mRNA	TpMuguga_04g00538	NW_876246.1	1071264	1072687	D	TpMuguga_04g00538	join(1071264..1071535,1071571..1071633,1071723..1072687)	Theileria parva strain Muguga	3501326
TpMuguga_04g00539	mRNA	TpMuguga_04g00539	NW_876246.1	1072653	1073111	R	TpMuguga_04g00539	complement(join(1072653..1072797,1072844..1072951,1072989..>1073111))	Theileria parva strain Muguga	3501327
TpMuguga_04g00540	mRNA	Puf60	NW_876246.1	1073179	1075047	R	TpMuguga_04g00540	complement(join(<1073179..1073288,1073319..1073424,1073454..1073851,1073905..1074012,1074068..1074269,1074321..1075047))	Theileria parva strain Muguga	3501328
TpMuguga_04g00541	mRNA	cse1l	NW_876246.1	1075540	1079896	D	TpMuguga_04g00541	join(1075540..1075871,1075903..1077210,1077282..1077823,1077915..1078217,1078274..1078624,1078689..1078787,1078865..1079896)	Theileria parva strain Muguga	3501329
TpMuguga_04g00542	mRNA	SAR1	NW_876246.1	1079897	1080813	D	TpMuguga_04g00542	join(1079897..1080178,1080246..>1080813)	Theileria parva strain Muguga	3501330
TpMuguga_04g00543	mRNA	TpMuguga_04g00543	NW_876246.1	1080855	1081709	D	TpMuguga_04g00543	join(1080855..1081057,1081092..1081125,1081159..1081242,1081272..1081410,1081442..1081571,1081606..1081709)	Theileria parva strain Muguga	3501331
TpMuguga_04g00544	mRNA	TpMuguga_04g00544	NW_876246.1	1081700	1085028	R	TpMuguga_04g00544	complement(join(<1081700..1081813,1081883..1082384,1082446..1082513,1082587..1084709,1084833..>1085028))	Theileria parva strain Muguga	3501107
TpMuguga_04g00545	mRNA	MAF1	NW_876246.1	1085048	1086121	R	TpMuguga_04g00545	complement(join(1085048..1085413,1085465..1085597,1085630..1085746,1085780..1086121))	Theileria parva strain Muguga	3501108
TpMuguga_04g00546	mRNA	TpMuguga_04g00546	NW_876246.1	1086128	1087351	D	TpMuguga_04g00546	join(1086128..1086652,1086687..1087126,1087178..1087351)	Theileria parva strain Muguga	3501109
TpMuguga_04g00547	mRNA	TpMuguga_04g00547	NW_876246.1	1087186	1087946	R	TpMuguga_04g00547	complement(join(1087186..1087332,1087367..1087426,1087459..1087542,1087587..1087946))	Theileria parva strain Muguga	3501110
TpMuguga_04g00548	mRNA	rsc5	NW_876246.1	1088149	1089518	D	TpMuguga_04g00548	join(1088149..1088824,1088947..1089518)	Theileria parva strain Muguga	3501111
TpMuguga_04g00549	mRNA	Letm1	NW_876246.1	1089558	1092137	D	TpMuguga_04g00549	join(1089558..1090657,1090687..1090786,1090819..1090897,1090961..1091025,1091107..1091724,1091783..1092137)	Theileria parva strain Muguga	3501112
TpMuguga_04g00550	mRNA	memo1	NW_876246.1	1092101	1093701	R	TpMuguga_04g00550	complement(join(1092101..1092261,1092296..1092349,1092383..1092453,1092549..1092658,1092688..1092734,1092789..1092820,1092851..1092915,1092984..1093208,1093284..1093352,1093389..1093473,1093541..1093701))	Theileria parva strain Muguga	3501084
TpMuguga_04g00551	mRNA	CDKG-2	NW_876246.1	1093720	1095504	R	TpMuguga_04g00551	complement(join(1093720..1093849,1093901..1093942,1094018..1094078,1094149..1094289,1094322..1095504))	Theileria parva strain Muguga	3501085
TpMuguga_04g00552	mRNA	mcfH	NW_876246.1	1095590	1097014	D	TpMuguga_04g00552	join(1095590..1095813,1095843..1095995,1096034..1096358,1096426..1096558,1096626..1097014)	Theileria parva strain Muguga	3501086
TpMuguga_04g00553	mRNA	TpMuguga_04g00553	NW_876246.1	1097083	1098097	D	TpMuguga_04g00553	join(1097083..1097841,1097994..1098097)	Theileria parva strain Muguga	3501087
TpMuguga_04g02365	mRNA	TpMuguga_04g02365	NW_876246.1	1098059	1099917	R	TpMuguga_04g02365	complement(join(1098059..1098677,1098758..1098841,1098871..1098926,1098966..1099020,1099052..1099233,1099315..1099398,1099430..1099485,1099520..1099632,1099745..1099917))	Theileria parva strain Muguga	3501089
TpMuguga_04g00556	mRNA	TpMuguga_04g00556	NW_876246.1	1100223	1103502	D	TpMuguga_04g00556	join(<1100223..1100481,1100547..1100584,1100616..1100670,1100701..1100771,1100801..1101345,1101379..1101551,1101614..1102060,1102090..1102807,1102837..1102894,1102930..1103016,1103081..1103207,1103275..1103502)	Theileria parva strain Muguga	3500951
TpMuguga_04g00557	mRNA	FH13	NW_876246.1	1103816	1108900	D	TpMuguga_04g00557	join(<1103816..1107547,1107614..1107730,1107793..1107880,1107928..1108277,1108310..1108567,1108610..1108900)	Theileria parva strain Muguga	3500952
TpMuguga_04g00558	mRNA	TpMuguga_04g00558	NW_876246.1	1108821	1110034	R	TpMuguga_04g00558	complement(join(1108821..1109068,1109127..1109147,1109179..1109307,1109340..1109403,1109442..1109527,1109559..1109610,1109664..1109801,1109835..1110034))	Theileria parva strain Muguga	3500953
TpMuguga_04g00559	mRNA	TpMuguga_04g00559	NW_876246.1	1110014	1110911	R	TpMuguga_04g00559	complement(join(1110014..1110111,1110146..1110283,1110312..1110388,1110458..1110491,1110555..1110646,1110677..1110801,1110837..1110911))	Theileria parva strain Muguga	3500954
TpMuguga_04g00560	mRNA	TpMuguga_04g00560	NW_876246.1	1110936	1112476	D	TpMuguga_04g00560	join(1110936..1111219,1111277..1111797,1111829..1111933,1111963..1112243,1112303..1112378,1112411..1112476)	Theileria parva strain Muguga	3500955
TpMuguga_04g00561	mRNA	pepA	NW_876246.1	1112567	1114668	D	TpMuguga_04g00561	join(1112567..1112889,1112973..1113300,1113352..1113663,1113727..1113927,1113989..1114112,1114175..1114235,1114293..1114449,1114481..1114668)	Theileria parva strain Muguga	3500793
TpMuguga_04g02685	mRNA	TpMuguga_04g02685	NW_876246.1	1114881	1115667	D	TpMuguga_04g02685	1114881..1115667	Theileria parva strain Muguga	86047852
TpMuguga_04g00562	mRNA	DBP2	NW_876246.1	1115699	1118132	R	TpMuguga_04g00562	complement(join(1115699..1115964,1116100..1116990,1117147..1118132))	Theileria parva strain Muguga	3500794
TpMuguga_04g00563	mRNA	TpMuguga_04g00563	NW_876246.1	1118594	1120207	D	TpMuguga_04g00563	join(1118594..1119016,1119291..1120087,1120118..1120207)	Theileria parva strain Muguga	3500795
TpMuguga_04g02710	mRNA	TpMuguga_04g02710	NW_876246.1	1120194	1121382	R	TpMuguga_04g02710	complement(join(1120194..1120371,1120431..1120501,1120531..1120631,1120676..1120924,1121013..1121382))	Theileria parva strain Muguga	3500797
TpMuguga_04g00566	mRNA	MTQ2	NW_876246.1	1121365	1122320	R	TpMuguga_04g00566	complement(join(1121365..1121483,1121514..1121582,1121612..1121644,1121693..1121800,1121852..1122083,1122116..1122259,1122310..>1122320))	Theileria parva strain Muguga	3500798
TpMuguga_04g02705	mRNA	TpMuguga_04g02705	NW_876246.1	1122324	1122677	R	TpMuguga_04g02705	complement(join(<1122324..1122383,1122437..1122523,1122585..>1122677))	Theileria parva strain Muguga	86047854
TpMuguga_04g00567	mRNA	TpMuguga_04g00567	NW_876246.1	1122783	1123427	R	TpMuguga_04g00567	complement(<1122783..>1123427)	Theileria parva strain Muguga	3500754
TpMuguga_04g00568	mRNA	trappc4	NW_876246.1	1123483	1124347	R	TpMuguga_04g00568	complement(join(<1123483..1123670,1123717..1123785,1123881..1124013,1124085..1124347))	Theileria parva strain Muguga	3500755
TpMuguga_04g00569	mRNA	TpMuguga_04g00569	NW_876246.1	1124765	1126141	D	TpMuguga_04g00569	1124765..1126141	Theileria parva strain Muguga	3500756
TpMuguga_04g00570	mRNA	TpMuguga_04g00570	NW_876246.1	1126364	1126856	D	TpMuguga_04g00570	1126364..1126856	Theileria parva strain Muguga	3500757
TpMuguga_04g00571	mRNA	PI4KG7	NW_876246.1	1127466	1130416	D	TpMuguga_04g00571	join(<1127466..1127672,1127861..1128056,1128140..1128235,1128357..1128683,1128826..1129595,1129801..1130416)	Theileria parva strain Muguga	3500758
TpMuguga_04g00572	mRNA	valS	NW_876246.1	1130425	1132887	R	TpMuguga_04g00572	complement(<1130425..>1132887)	Theileria parva strain Muguga	3500759
TpMuguga_04g00573	mRNA	TpMuguga_04g00573	NW_876246.1	1132864	1137284	R	TpMuguga_04g00573	complement(1132864..1137284)	Theileria parva strain Muguga	3500760
TpMuguga_04g00574	mRNA	TpMuguga_04g00574	NW_876246.1	1137776	1141078	D	TpMuguga_04g00574	join(<1137776..1138015,1138133..1138240,1138276..1138486,1138619..1138780,1138849..1139034,1139108..1139241,1139272..1139320,1139427..1139635,1139666..1139898,1139983..1140050,1140081..1140272,1140437..1140564,1140641..1140761,1140845..1141078)	Theileria parva strain Muguga	3500547
TpMuguga_04g00575	mRNA	RABF2B	NW_876246.1	1141222	1142483	R	TpMuguga_04g00575	complement(1141222..1142483)	Theileria parva strain Muguga	3500548
TpMuguga_04g00576	mRNA	TpMuguga_04g00576	NW_876246.1	1142554	1144515	D	TpMuguga_04g00576	join(1142554..1142981,1143163..1144515)	Theileria parva strain Muguga	3500549
TpMuguga_04g00577	mRNA	TpMuguga_04g00577	NW_876246.1	1144067	1146479	R	TpMuguga_04g00577	complement(join(1144067..1144143,1144231..1144400,1144434..1144491,1144521..1144596,1144650..1144745,1144801..1144910,1145608..1145711,1145751..1145848,1145889..1145962,1146040..1146152,1146299..1146479))	Theileria parva strain Muguga	3500550
TpMuguga_04g00578	mRNA	TpMuguga_04g00578	NW_876246.1	1146440	1149568	D	TpMuguga_04g00578	join(1146440..1146615,1146647..1146723,1146909..1147524,1147998..1148779,1149074..1149392,1149501..1149568)	Theileria parva strain Muguga	3500551
TpMuguga_04g00579	mRNA	TpMuguga_04g00579	NW_876246.1	1149466	1150714	R	TpMuguga_04g00579	complement(join(1149466..1149688,1150058..1150714))	Theileria parva strain Muguga	3500540
TpMuguga_04g00580	mRNA	CNOT8	NW_876246.1	1150643	1153095	D	TpMuguga_04g00580	1150643..1153095	Theileria parva strain Muguga	3500541
TpMuguga_04g00582	mRNA	TpMuguga_04g00582	NW_876246.1	1153482	1153782	R	TpMuguga_04g00582	complement(join(1153482..1153572,1153603..1153782))	Theileria parva strain Muguga	3500543
TpMuguga_04g00583	mRNA	TpMuguga_04g00583	NW_876246.1	1153858	1154300	D	TpMuguga_04g00583	join(1153858..1154223,1154255..1154300)	Theileria parva strain Muguga	3500544
TpMuguga_04g00584	mRNA	TpMuguga_04g00584	NW_876246.1	1154484	1154840	D	TpMuguga_04g00584	join(<1154484..1154633,1154775..>1154840)	Theileria parva strain Muguga	3500545
TpMuguga_04g00585	mRNA	TpMuguga_04g00585	NW_876246.1	1155300	1155590	D	TpMuguga_04g00585	join(<1155300..1155461,1155492..>1155590)	Theileria parva strain Muguga	3500546
TpMuguga_04g02270	mRNA	TpMuguga_04g02270	NW_876246.1	1155855	1159590	D	TpMuguga_04g02270	join(<1155855..1156890,1157057..1157273,1157424..1158254,1158397..1158952,1159054..1159167,1159378..>1159590)	Theileria parva strain Muguga	3501354
TpMuguga_04g02130	mRNA	cdkal1	NW_876246.1	1159420	1161451	R	TpMuguga_04g02130	complement(join(1159420..1159980,1160199..1160527,1160607..1160792,1160872..1161064,1161226..>1161451))	Theileria parva strain Muguga	3501355
TpMuguga_04g02155	mRNA	TpMuguga_04g02155	NW_876246.1	1161667	1162772	R	TpMuguga_04g02155	complement(join(<1161667..1161705,1161757..1162277,1162360..1162772))	Theileria parva strain Muguga	86047815
TpMuguga_04g00589	mRNA	TpMuguga_04g00589	NW_876246.1	1162842	1163923	D	TpMuguga_04g00589	1162842..1163923	Theileria parva strain Muguga	86047796
TpMuguga_04g00590	mRNA	TpMuguga_04g00590	NW_876246.1	1163939	1167685	R	TpMuguga_04g00590	complement(<1163939..>1167685)	Theileria parva strain Muguga	3501357
TpMuguga_04g00591	mRNA	TpMuguga_04g00591	NW_876246.1	1167857	1168648	R	TpMuguga_04g00591	complement(<1167857..>1168648)	Theileria parva strain Muguga	3501358
TpMuguga_04g00592	mRNA	lrs-1	NW_876246.1	1169011	1173100	R	TpMuguga_04g00592	complement(join(1169011..1169168,1169222..1169505,1169550..1169678,1169710..1169848,1169937..1170985,1171081..1171328,1171408..1171857,1171910..1172698,1172731..1172780,1172823..1173100))	Theileria parva strain Muguga	3501359
TpMuguga_04g00593	mRNA	TpMuguga_04g00593	NW_876246.1	1173176	1174218	D	TpMuguga_04g00593	1173176..1174218	Theileria parva strain Muguga	3500552
TpMuguga_04g00594	mRNA	CUL1	NW_876246.1	1174200	1176776	R	TpMuguga_04g00594	complement(join(1174200..1174293,1174387..1175664,1175695..1175856,1175887..1176144,1176201..1176534,1176565..1176687,1176717..1176776))	Theileria parva strain Muguga	3500553
TpMuguga_04g00595	mRNA	TpMuguga_04g00595	NW_876246.1	1176791	1182778	R	TpMuguga_04g00595	complement(join(1176791..1177240,1177340..1178256,1178338..1182482,1182508..1182518,1182560..>1182778))	Theileria parva strain Muguga	3500554
TpMuguga_04g00596	mRNA	TpMuguga_04g00596	NW_876246.1	1183159	1184160	D	TpMuguga_04g00596	join(1183159..1183301,1183413..1183830,1183860..>1184160)	Theileria parva strain Muguga	3500555
TpMuguga_04g00597	mRNA	erpA	NW_876246.1	1184174	1184497	D	TpMuguga_04g00597	join(<1184174..1184310,1184362..>1184497)	Theileria parva strain Muguga	3500556
TpMuguga_04g00598	mRNA	SERA	NW_876246.1	1184499	1185647	R	TpMuguga_04g00598	complement(join(<1184499..1184894,1184911..1184937,1184971..1185100,1185141..1185301,1185337..1185485,1185515..>1185647))	Theileria parva strain Muguga	3500780
TpMuguga_04g00599	mRNA	TpMuguga_04g00599	NW_876246.1	1185895	1186542	R	TpMuguga_04g00599	complement(<1185895..>1186542)	Theileria parva strain Muguga	3500781
TpMuguga_04g00600	mRNA	TpMuguga_04g00600	NW_876246.1	1186636	1188893	R	TpMuguga_04g00600	complement(1186636..>1188893)	Theileria parva strain Muguga	3500782
TpMuguga_04g02650	mRNA	TpMuguga_04g02650	NW_876246.1	1188965	1189632	D	TpMuguga_04g02650	join(1188965..1189399,1189430..1189469,1189501..1189632)	Theileria parva strain Muguga	86047850
TpMuguga_04g02655	mRNA	TpMuguga_04g02655	NW_876246.1	1189633	1190138	D	TpMuguga_04g02655	join(1189633..1189823,1189863..1189986,1190016..1190138)	Theileria parva strain Muguga	3500783
TpMuguga_04g00602	mRNA	TpMuguga_04g00602	NW_876246.1	1190157	1191960	R	TpMuguga_04g00602	complement(<1190157..1191960)	Theileria parva strain Muguga	3500784
TpMuguga_04g00603	mRNA	TpMuguga_04g00603	NW_876246.1	1191977	1193538	D	TpMuguga_04g00603	join(1191977..1193096,1193155..1193538)	Theileria parva strain Muguga	3500785
TpMuguga_04g00604	mRNA	TpMuguga_04g00604	NW_876246.1	1193539	1194583	R	TpMuguga_04g00604	complement(join(1193539..1193744,1193777..1193926,1193978..1194127,1194161..>1194583))	Theileria parva strain Muguga	3500786
TpMuguga_04g00605	mRNA	DHRSX	NW_876246.1	1194673	1196259	R	TpMuguga_04g00605	complement(join(1194673..1194842,1194875..1195036,1195071..1195469,1195501..1195636,1195670..1196259))	Theileria parva strain Muguga	3500999
TpMuguga_04g00606	mRNA	DHRSX	NW_876246.1	1196311	1197903	R	TpMuguga_04g00606	complement(join(1196311..1196512,1196543..1196704,1196745..1197143,1197175..1197310,1197344..1197903))	Theileria parva strain Muguga	3501000
TpMuguga_04g00607	mRNA	PYK	NW_876246.1	1198043	1199850	R	TpMuguga_04g00607	complement(join(1198043..1198697,1198786..1199506,1199539..1199850))	Theileria parva strain Muguga	3501001
TpMuguga_04g00608	mRNA	Klhdc4	NW_876246.1	1199851	1201874	R	TpMuguga_04g00608	complement(join(1199851..1199916,1199949..1200343,1200374..1200586,1200616..1200739,1200771..1200867,1200900..1200973,1201004..1201190,1201227..1201377,1201407..1201565,1201621..1201874))	Theileria parva strain Muguga	3501002
TpMuguga_04g00609	mRNA	ANK2	NW_876246.1	1201979	1205015	R	TpMuguga_04g00609	complement(1201979..1205015)	Theileria parva strain Muguga	3501003
TpMuguga_04g00610	mRNA	NIFU4	NW_876246.1	1205097	1205892	D	TpMuguga_04g00610	join(1205097..1205648,1205701..1205892)	Theileria parva strain Muguga	3501004
TpMuguga_04g00611	mRNA	TpMuguga_04g00611	NW_876246.1	1205153	1208035	R	TpMuguga_04g00611	complement(join(1205153..1205856,1205996..1206089,1206119..1208035))	Theileria parva strain Muguga	3501039
TpMuguga_04g02220	mRNA	TpMuguga_04g02220	NW_876246.1	1208122	1210052	D	TpMuguga_04g02220	join(1208122..1209185,1209239..1209596,1209628..>1210052)	Theileria parva strain Muguga	3501040
TpMuguga_04g00614	mRNA	ISW2	NW_876246.1	1211061	1217684	D	TpMuguga_04g00614	join(<1211061..1211130,1211200..1211691,1211728..1212018,1212106..1212351,1212483..1212875,1212907..1212998,1213188..>1217684)	Theileria parva strain Muguga	3501042
TpMuguga_04g00615	mRNA	gpi12	NW_876246.1	1217878	1219015	R	TpMuguga_04g00615	complement(join(1217878..1218073,1218104..1218211,1218328..1218574,1218641..1219015))	Theileria parva strain Muguga	3501043
TpMuguga_04g00616	mRNA	TpMuguga_04g00616	NW_876246.1	1218973	1219693	R	TpMuguga_04g00616	complement(join(1218973..1219144,1219275..1219396,1219427..1219693))	Theileria parva strain Muguga	3501044
TpMuguga_04g00617	mRNA	TpMuguga_04g00617	NW_876246.1	1220189	1221204	D	TpMuguga_04g00617	join(1220189..1220633,1220687..1221004,1221053..1221204)	Theileria parva strain Muguga	3501182
TpMuguga_04g00618	mRNA	PBC1	NW_876246.1	1221274	1222240	D	TpMuguga_04g00618	join(1221274..1221410,1221534..1221724,1221758..1222040,1222080..1222240)	Theileria parva strain Muguga	3501183
TpMuguga_04g00619	mRNA	TpMuguga_04g00619	NW_876246.1	1222374	1224402	D	TpMuguga_04g00619	1222374..1224402	Theileria parva strain Muguga	3501184
TpMuguga_04g00620	mRNA	idhM	NW_876246.1	1224533	1226267	R	TpMuguga_04g00620	complement(join(1224533..1224820,1224866..1224977,1225034..1225625,1225666..1225753,1225808..1225885,1225960..1226267))	Theileria parva strain Muguga	3501185
TpMuguga_04g00621	mRNA	MRE11A	NW_876246.1	1226616	1229798	D	TpMuguga_04g00621	join(1226616..1226976,1227041..1227806,1227916..1228115,1228146..1228204,1228234..1228794,1228824..1228963,1229035..1229099,1229128..1229321,1229351..1229488,1229518..1229654,1229684..>1229798)	Theileria parva strain Muguga	3501186
TpMuguga_04g00622	mRNA	TpMuguga_04g00622	NW_876246.1	1229837	1231727	D	TpMuguga_04g00622	join(1229837..1230243,1230303..1230693,1230723..1230838,1230870..1230977,1231010..1231119,1231148..1231241,1231273..1231365,1231395..>1231727)	Theileria parva strain Muguga	3501187
TpMuguga_04g02075	mRNA	TpMuguga_04g02075	NW_876246.1	1231843	1232465	D	TpMuguga_04g02075	join(1231843..1231929,1231962..1232267,1232318..1232344,1232374..>1232465)	Theileria parva strain Muguga	86047806
TpMuguga_04g00623	mRNA	TpMuguga_04g00623	NW_876246.1	1232295	1233089	R	TpMuguga_04g00623	complement(join(1232295..1232764,1232819..1233089))	Theileria parva strain Muguga	3501229
TpMuguga_04g00624	mRNA	nat5	NW_876246.1	1233060	1234202	R	TpMuguga_04g00624	complement(join(1233060..1233400,1233498..1233720,1233846..1233937,1233967..1234056,1234145..>1234202))	Theileria parva strain Muguga	3501230
TpMuguga_04g00625	mRNA	TpMuguga_04g00625	NW_876246.1	1234354	1235484	R	TpMuguga_04g00625	complement(join(1234354..1234483,1234581..1234712,1234743..1234786,1234849..1234902,1234966..1235056,1235120..1235177,1235237..1235484))	Theileria parva strain Muguga	3501231
TpMuguga_04g00626	mRNA	cpsf5	NW_876246.1	1235535	1236319	R	TpMuguga_04g00626	complement(join(<1235535..1235693,1235798..>1236319))	Theileria parva strain Muguga	3501232
TpMuguga_04g02545	mRNA	TpMuguga_04g02545	NW_876246.1	1236436	1240181	R	TpMuguga_04g02545	complement(join(<1236436..1236723,1236753..1236865,1236920..1237439,1237469..1237557,1237590..1237706,1237737..1237886,1237919..1238412,1238444..1238536,1238572..1238809,1238841..1238894,1238926..1239083,1239114..1239320,1239354..1239465,1239512..1239595,1239635..>1240181))	Theileria parva strain Muguga	3501234
TpMuguga_04g00629	mRNA	TpMuguga_04g00629	NW_876246.1	1240129	1241023	R	TpMuguga_04g00629	complement(join(1240129..1240532,1240580..>1241023))	Theileria parva strain Muguga	3501223
TpMuguga_04g00630	mRNA	TpMuguga_04g00630	NW_876246.1	1241389	1242417	R	TpMuguga_04g00630	complement(<1241389..>1242417)	Theileria parva strain Muguga	3501224
TpMuguga_04g00631	mRNA	TpMuguga_04g00631	NW_876246.1	1242573	1244267	D	TpMuguga_04g00631	1242573..>1244267	Theileria parva strain Muguga	3501225
TpMuguga_04g02190	mRNA	TpMuguga_04g02190	NW_876246.1	1244509	1245990	D	TpMuguga_04g02190	1244509..1245990	Theileria parva strain Muguga	86047818
TpMuguga_04g02185	mRNA	ctf18	NW_876246.1	1246067	1249126	D	TpMuguga_04g02185	join(1246067..1246151,1246183..1246672,1246703..1246889,1246920..1247284,1247314..1247544,1247606..1247850,1247896..1248132,1248200..1248316,1248406..1248524,1248609..1249126)	Theileria parva strain Muguga	3501226
TpMuguga_04g00633	mRNA	TpMuguga_04g00633	NW_876246.1	1249130	1250060	R	TpMuguga_04g00633	complement(join(1249130..1249548,1249578..1249784,1249820..1250060))	Theileria parva strain Muguga	3501227
TpMuguga_04g00634	mRNA	TpMuguga_04g00634	NW_876246.1	1250045	1250924	R	TpMuguga_04g00634	complement(join(1250045..1250263,1250296..1250372,1250410..1250578,1250617..1250924))	Theileria parva strain Muguga	3501228
TpMuguga_04g00635	mRNA	TpMuguga_04g00635	NW_876246.1	1250997	1251726	D	TpMuguga_04g00635	1250997..1251726	Theileria parva strain Muguga	3501299
TpMuguga_04g00636	mRNA	iscA	NW_876246.1	1251727	1252436	D	TpMuguga_04g00636	join(1251727..1252037,1252107..1252436)	Theileria parva strain Muguga	3501300
TpMuguga_04g00637	mRNA	cdc123	NW_876246.1	1252426	1254065	R	TpMuguga_04g00637	complement(join(1252426..1252987,1253017..1253111,1253141..1253718,1253752..1254065))	Theileria parva strain Muguga	3501301
TpMuguga_04g00638	mRNA	TpMuguga_04g00638	NW_876246.1	1253768	1254477	D	TpMuguga_04g00638	join(1253768..1254265,1254297..1254477)	Theileria parva strain Muguga	3501302
TpMuguga_04g00639	mRNA	VPS33	NW_876246.1	1254450	1256756	R	TpMuguga_04g00639	complement(1254450..>1256756)	Theileria parva strain Muguga	3501303
TpMuguga_04g00640	mRNA	TpMuguga_04g00640	NW_876246.1	1256867	1258307	D	TpMuguga_04g00640	join(<1256867..1256921,1256957..1257029,1257066..1257184,1257213..1258307)	Theileria parva strain Muguga	3501304
TpMuguga_04g00641	mRNA	TpMuguga_04g00641	NW_876246.1	1257330	1258464	R	TpMuguga_04g00641	complement(join(<1257330..1258022,1258055..1258269,1258362..1258464))	Theileria parva strain Muguga	3501305
TpMuguga_04g00642	mRNA	TpMuguga_04g00642	NW_876246.1	1258517	1259748	R	TpMuguga_04g00642	complement(join(<1258517..1258654,1258692..1259748))	Theileria parva strain Muguga	3501320
TpMuguga_04g00643	mRNA	TpMuguga_04g00643	NW_876246.1	1259907	1261863	R	TpMuguga_04g00643	complement(join(1259907..1260547,1260584..1261484,1261520..1261863))	Theileria parva strain Muguga	3501321
TpMuguga_04g00644	mRNA	RAB1A	NW_876246.1	1262514	1263704	D	TpMuguga_04g00644	join(1262514..1262684,1262773..1262845,1262878..1262925,1262957..1263004,1263038..1263133,1263164..1263295,1263324..1263392,1263421..1263461,1263542..1263600,1263631..1263704)	Theileria parva strain Muguga	3501322
TpMuguga_04g00645	mRNA	TpMuguga_04g00645	NW_876246.1	1263760	1266681	R	TpMuguga_04g00645	complement(join(1263760..1263965,1264029..1264088,1264181..1264305,1264336..1264419,1264505..1266681))	Theileria parva strain Muguga	3501323
TpMuguga_04g00646	mRNA	TpMuguga_04g00646	NW_876246.1	1266778	1269938	D	TpMuguga_04g00646	join(1266778..1267549,1267625..1267942,1268118..1268315,1268386..1269938)	Theileria parva strain Muguga	3501324
TpMuguga_04g00647	mRNA	TpMuguga_04g00647	NW_876246.1	1270157	1272580	D	TpMuguga_04g00647	join(1270157..1271557,1271589..1272580)	Theileria parva strain Muguga	3501325
TpMuguga_04g00648	mRNA	polr3a	NW_876246.1	1272755	1278507	D	TpMuguga_04g00648	join(<1272755..1273148,1273221..1273439,1273496..1273803,1273889..1273972,1274003..1274186,1274258..1275936,1276039..1276264,1276342..1276838,1276899..1277498,1277707..1278036,1278149..1278507)	Theileria parva strain Muguga	3501188
TpMuguga_04g00649	mRNA	TpMuguga_04g00649	NW_876246.1	1278584	1280505	R	TpMuguga_04g00649	complement(join(1278584..1278718,1278759..1280505))	Theileria parva strain Muguga	3501189
TpMuguga_04g00924	mRNA	TpMuguga_04g00924	NW_876246.1	1280533	1281701	D	TpMuguga_04g00924	join(1280533..1280892,1280928..1281136,1281182..1281310,1281354..1281403,1281434..1281616,1281677..>1281701)	Theileria parva strain Muguga	3501190
TpMuguga_04g00925	mRNA	TpMuguga_04g00925	NW_876246.1	1281730	1283686	D	TpMuguga_04g00925	join(<1281730..1282434,1282479..1282714,1282793..1283101,1283187..1283531,1283597..1283686)	Theileria parva strain Muguga	3501191
TpMuguga_04g00651	mRNA	TpMuguga_04g00651	NW_876246.1	1283759	1284182	D	TpMuguga_04g00651	join(1283759..1284078,1284109..1284182)	Theileria parva strain Muguga	3501192
TpMuguga_04g00652	mRNA	RH50	NW_876246.1	1284478	1286850	R	TpMuguga_04g00652	complement(join(1284478..1285548,1285652..1286522,1286553..>1286850))	Theileria parva strain Muguga	3501193
TpMuguga_04g02370	mRNA	TpMuguga_04g02370	NW_876246.1	1286910	1287842	D	TpMuguga_04g02370	join(1286910..1287207,1287237..1287266,1287297..1287369,1287400..1287480,1287513..1287573,1287605..1287666,1287697..1287842)	Theileria parva strain Muguga	86047832
TpMuguga_04g00653	mRNA	TpMuguga_04g00653	NW_876246.1	1288140	1289608	D	TpMuguga_04g00653	<1288140..1289608	Theileria parva strain Muguga	3501175
TpMuguga_04g00654	mRNA	TpMuguga_04g00654	NW_876246.1	1289978	1291978	D	TpMuguga_04g00654	join(<1289978..1290287,1290513..>1291978)	Theileria parva strain Muguga	3501176
TpMuguga_04g00655	mRNA	TpMuguga_04g00655	NW_876246.1	1292259	1294200	D	TpMuguga_04g00655	1292259..1294200	Theileria parva strain Muguga	3501177
TpMuguga_04g00656	mRNA	TpMuguga_04g00656	NW_876246.1	1294317	1295991	D	TpMuguga_04g00656	<1294317..1295991	Theileria parva strain Muguga	3501178
TpMuguga_04g00657	mRNA	TpMuguga_04g00657	NW_876246.1	1296137	1297759	D	TpMuguga_04g00657	1296137..1297759	Theileria parva strain Muguga	3501179
TpMuguga_04g00658	mRNA	TpMuguga_04g00658	NW_876246.1	1297932	1300774	R	TpMuguga_04g00658	complement(join(1297932..1298031,1298061..1298090,1298122..1298174,1298209..1298261,1298300..1298480,1298513..1298573,1298656..1299168,1299198..1299283,1299314..1299380,1299410..1299513,1299563..1299933,1299962..1300106,1300173..1300774))	Theileria parva strain Muguga	3501180
TpMuguga_04g00659	mRNA	HD6	NW_876246.1	1301158	1302662	D	TpMuguga_04g00659	1301158..1302662	Theileria parva strain Muguga	3501181
TpMuguga_04g00660	mRNA	scsA	NW_876246.1	1302855	1304154	D	TpMuguga_04g00660	join(<1302855..1302893,1302931..1303035,1303087..1303224,1303289..1303562,1303611..1303772,1303850..1303981,1304015..>1304154)	Theileria parva strain Muguga	3501150
TpMuguga_04g00661	mRNA	RTCB	NW_876246.1	1304218	1306188	D	TpMuguga_04g00661	join(1304218..1304591,1304635..1304862,1304891..1305087,1305148..1305528,1305586..1305799,1305853..1305935,1306008..1306082,1306120..>1306188)	Theileria parva strain Muguga	3501151
TpMuguga_04g00662	mRNA	TpMuguga_04g00662	NW_876246.1	1306345	1307489	D	TpMuguga_04g00662	join(1306345..1306569,1306613..1306740,1306838..1307412,1307451..1307489)	Theileria parva strain Muguga	3501152
TpMuguga_04g00663	mRNA	RIN1	NW_876246.1	1307495	1309544	R	TpMuguga_04g00663	complement(join(1307495..1307773,1307806..1307910,1308018..1308266,1308340..1308500,1308534..1309010,1309075..1309544))	Theileria parva strain Muguga	3501153
TpMuguga_04g00664	mRNA	CAPN7	NW_876246.1	1309704	1313010	D	TpMuguga_04g00664	join(1309704..1310849,1310882..1311051,1311133..1311829,1311965..>1313010)	Theileria parva strain Muguga	3501154
TpMuguga_04g00665	mRNA	Trrap	NW_876246.1	1313196	1326181	R	TpMuguga_04g00665	complement(join(1313196..1315612,1315804..1316008,1316137..1316532,1316644..1316953,1317017..1318315,1318415..1320671,1320705..1320796,1320901..1321653,1321733..1322063,1322110..1324643,1324699..1324984,1325116..1325244,1325348..1325441,1325472..1325600,1325633..1326019,1326064..>1326181))	Theileria parva strain Muguga	3501008
TpMuguga_04g00666	mRNA	Plrg1	NW_876246.1	1326427	1328187	D	TpMuguga_04g00666	1326427..1328187	Theileria parva strain Muguga	3501009
TpMuguga_04g02330	mRNA	TpMuguga_04g02330	NW_876246.1	1328329	1329439	R	TpMuguga_04g02330	complement(1328329..1329439)	Theileria parva strain Muguga	86047828
TpMuguga_04g02090	mRNA	TpMuguga_04g02090	NW_876246.1	1329303	1329993	D	TpMuguga_04g02090	join(1329303..1329633,1329666..1329893,1329924..1329993)	Theileria parva strain Muguga	86047808
TpMuguga_04g02670	mRNA	TpMuguga_04g02670	NW_876246.1	1330012	1332391	R	TpMuguga_04g02670	complement(join(<1330012..1330889,1330921..1331262,1331295..1331372,1331402..1331450,1331482..1332391))	Theileria parva strain Muguga	3501010
TpMuguga_04g02285	mRNA	TpMuguga_04g02285	NW_876246.1	1332608	1333092	R	TpMuguga_04g02285	complement(join(1332608..1332704,1332740..1332848,1332887..1332985,1333021..>1333092))	Theileria parva strain Muguga	86047825
TpMuguga_04g00668	mRNA	TpMuguga_04g00668	NW_876246.1	1333200	1334797	R	TpMuguga_04g00668	complement(join(<1333200..1333211,1333241..1333336,1333388..1333583,1333634..1333821,1333882..1333950,1333981..1334076,1334107..1334251,1334281..1334464,1334517..1334618,1334654..1334797))	Theileria parva strain Muguga	3501012
TpMuguga_04g00669	mRNA	rbx-1	NW_876246.1	1334888	1335381	R	TpMuguga_04g00669	complement(join(1334888..1335103,1335141..1335381))	Theileria parva strain Muguga	3500774
TpMuguga_04g00670	mRNA	THOC3	NW_876246.1	1335427	1336768	D	TpMuguga_04g00670	join(1335427..1335887,1335917..>1336768)	Theileria parva strain Muguga	3500775
TpMuguga_04g00671	mRNA	TpMuguga_04g00671	NW_876246.1	1336763	1338404	D	TpMuguga_04g00671	join(1336763..1336845,1336878..1336938,1336957..1337066,1337115..1337181,1337211..1337262,1337293..1337341,1337398..1337490,1337522..1337665,1337696..1337739,1337771..1337796,1337830..1337988,1338029..1338119,1338156..1338227,1338270..1338404)	Theileria parva strain Muguga	3500776
TpMuguga_04g00672	mRNA	TpMuguga_04g00672	NW_876246.1	1338381	1340175	D	TpMuguga_04g00672	join(1338381..1339128,1339161..1339356,1339387..1339531,1339563..1339620,1339651..1339754,1339785..1339977,1340020..1340089,1340125..>1340175)	Theileria parva strain Muguga	3500777
TpMuguga_04g02160	mRNA	TpMuguga_04g02160	NW_876246.1	1340095	1340901	D	TpMuguga_04g02160	join(1340095..1340245,1340286..1340421,1340466..1340633,1340664..1340766,1340798..1340901)	Theileria parva strain Muguga	3500778
TpMuguga_04g00675	mRNA	TpMuguga_04g00675	NW_876246.1	1341133	1341560	D	TpMuguga_04g00675	1341133..1341560	Theileria parva strain Muguga	3500683
TpMuguga_04g00676	mRNA	TPI	NW_876246.1	1341685	1342945	D	TpMuguga_04g00676	join(<1341685..1341810,1341858..1342136,1342166..1342318,1342349..1342411,1342442..1342517,1342549..1342604,1342634..>1342945)	Theileria parva strain Muguga	3500684
TpMuguga_04g00677	mRNA	TpMuguga_04g00677	NW_876246.1	1343197	1343623	D	TpMuguga_04g00677	1343197..1343623	Theileria parva strain Muguga	3500685
TpMuguga_04g00678	mRNA	CPK4	NW_876246.1	1343779	1346240	R	TpMuguga_04g00678	complement(join(1343779..1345344,1345378..1346240))	Theileria parva strain Muguga	3500686
TpMuguga_04g00679	mRNA	CAL	NW_876246.1	1346241	1347571	R	TpMuguga_04g00679	complement(join(1346241..1346505,1346537..1346581,1346614..1346761,1346792..1347571))	Theileria parva strain Muguga	3500687
TpMuguga_04g00680	mRNA	RpS4	NW_876246.1	1347605	1348692	D	TpMuguga_04g00680	join(1347605..1347789,1347893..1348692)	Theileria parva strain Muguga	3500688
TpMuguga_04g00681	mRNA	CML6	NW_876246.1	1348718	1349913	R	TpMuguga_04g00681	complement(join(1348718..1348885,1348922..1349086,1349117..1349177,1349222..1349913))	Theileria parva strain Muguga	3500689
TpMuguga_04g00682	mRNA	TpMuguga_04g00682	NW_876246.1	1349893	1352435	R	TpMuguga_04g00682	complement(1349893..1352435)	Theileria parva strain Muguga	3500534
TpMuguga_04g00683	mRNA	Hspa5	NW_876246.1	1352843	1355495	R	TpMuguga_04g00683	complement(join(1352843..1353522,1353609..1353773,1353836..1354867,1354959..1355108,1355147..1355495))	Theileria parva strain Muguga	3500535
TpMuguga_04g02135	mRNA	TpMuguga_04g02135	NW_876246.1	1355865	1356179	R	TpMuguga_04g02135	complement(<1355865..>1356179)	Theileria parva strain Muguga	86047813
TpMuguga_04g02245	mRNA	TpMuguga_04g02245	NW_876246.1	1356382	1356777	D	TpMuguga_04g02245	join(1356382..1356700,1356740..>1356777)	Theileria parva strain Muguga	86047822
TpMuguga_04g02630	mRNA	TpMuguga_04g02630	NW_876246.1	1356819	1358621	D	TpMuguga_04g02630	join(<1356819..1356911,1356941..1357035,1357065..1357155,1357185..1357336,1357368..1357465,1357494..1357549,1357610..1357885,1357918..1357968,1358006..1358085,1358150..1358206,1358238..1358390,1358421..1358479,1358534..1358621)	Theileria parva strain Muguga	3500538
TpMuguga_04g00687	mRNA	ttc4	NW_876246.1	1358714	1360248	R	TpMuguga_04g00687	complement(join(1358714..1358872,1358901..1359030,1359077..1359173,1359244..1359289,1359329..1359587,1359620..1359686,1359722..1359869,1359948..1360036,1360075..1360248))	Theileria parva strain Muguga	3500539
TpMuguga_04g00688	mRNA	dnaJ	NW_876246.1	1360233	1362150	R	TpMuguga_04g00688	complement(join(1360233..1360374,1360404..1360502,1360568..1360777,1360808..1360878,1360913..1361096,1361131..1361540,1361685..1362150))	Theileria parva strain Muguga	3500490
TpMuguga_04g00689	mRNA	TpMuguga_04g00689	NW_876246.1	1362236	1363405	R	TpMuguga_04g00689	complement(join(1362236..1362364,1362452..1363405))	Theileria parva strain Muguga	3500491
TpMuguga_04g00690	mRNA	gpmA2	NW_876246.1	1363829	1365017	D	TpMuguga_04g00690	join(1363829..1363988,1364029..1364110,1364140..1364280,1364310..1364599,1364630..1364793,1364849..1365017)	Theileria parva strain Muguga	3500492
TpMuguga_04g02620	mRNA	TpMuguga_04g02620	NW_876246.1	1365184	1365559	D	TpMuguga_04g02620	join(<1365184..1365348,1365381..1365433,1365464..1365559)	Theileria parva strain Muguga	86047848
TpMuguga_04g00691	mRNA	abhd17c	NW_876246.1	1365511	1366789	R	TpMuguga_04g00691	complement(join(1365511..1366674,1366704..>1366789))	Theileria parva strain Muguga	3500493
TpMuguga_04g00692	mRNA	TpMuguga_04g00692	NW_876246.1	1366800	1371286	R	TpMuguga_04g00692	complement(1366800..1371286)	Theileria parva strain Muguga	3500494
TpMuguga_04g00693	mRNA	TpMuguga_04g00693	NW_876246.1	1371579	1372388	D	TpMuguga_04g00693	join(1371579..1371946,1371977..1372388)	Theileria parva strain Muguga	3500495
TpMuguga_04g02250	mRNA	TpMuguga_04g02250	NW_876246.1	1372382	1374373	R	TpMuguga_04g02250	complement(join(<1372382..1372804,1372834..1373972,1374003..1374072,1374104..1374161,1374196..1374238,1374274..>1374373))	Theileria parva strain Muguga	86047823
TpMuguga_04g02040	mRNA	TpMuguga_04g02040	NW_876246.1	1374504	1375739	R	TpMuguga_04g02040	complement(join(<1374504..1374518,1374557..1374613,1374646..1374818,1374848..1375074,1375107..1375739))	Theileria parva strain Muguga	3500723
TpMuguga_04g00696	mRNA	TpMuguga_04g00696	NW_876246.1	1375823	1378120	D	TpMuguga_04g00696	join(1375823..1377125,1377229..1377317,1377350..1377498,1377579..1377713,1377776..1377872,1377985..1378120)	Theileria parva strain Muguga	3500724
TpMuguga_04g00697	mRNA	TpMuguga_04g00697	NW_876246.1	1378136	1380281	R	TpMuguga_04g00697	complement(join(1378136..1378300,1378335..1378495,1378557..1378647,1378716..1378928,1378958..1379010,1379043..1379237,1379269..1379634,1379664..1380044,1380083..>1380281))	Theileria parva strain Muguga	3500725
TpMuguga_04g02530	mRNA	TpMuguga_04g02530	NW_876246.1	1380308	1381702	R	TpMuguga_04g02530	complement(join(1380308..1380509,1380544..1380771,1380803..1380899,1380931..1381073,1381105..1381175,1381206..1381277,1381306..1381459,1381492..1381702))	Theileria parva strain Muguga	3500727
TpMuguga_04g00700	mRNA	ENO	NW_876246.1	1381794	1383232	D	TpMuguga_04g00700	join(1381794..1381890,1381927..1383232)	Theileria parva strain Muguga	3500925
TpMuguga_04g00701	mRNA	TpMuguga_04g00701	NW_876246.1	1383528	1384199	D	TpMuguga_04g00701	<1383528..>1384199	Theileria parva strain Muguga	3500926
TpMuguga_04g00702	mRNA	TpMuguga_04g00702	NW_876246.1	1384360	1384937	D	TpMuguga_04g00702	join(1384360..1384583,1384617..>1384937)	Theileria parva strain Muguga	3500927
TpMuguga_04g00703	mRNA	TpMuguga_04g00703	NW_876246.1	1385047	1389552	D	TpMuguga_04g00703	join(<1385047..1385636,1385697..>1389552)	Theileria parva strain Muguga	3500928
TpMuguga_04g00704	mRNA	TpMuguga_04g00704	NW_876246.1	1389617	1389787	D	TpMuguga_04g00704	<1389617..>1389787	Theileria parva strain Muguga	3500929
TpMuguga_04g00705	mRNA	ASMTL	NW_876246.1	1389826	1390670	D	TpMuguga_04g00705	join(<1389826..1390161,1390203..1390473,1390506..1390670)	Theileria parva strain Muguga	3500930
TpMuguga_04g00706	mRNA	TpMuguga_04g00706	NW_876246.1	1390833	1395200	D	TpMuguga_04g00706	join(<1390833..1391106,1391140..1391401,1391431..1391591,1391621..1391858,1391890..1392423,1392454..1392606,1392636..1392728,1392759..1393039,1393069..1393437,1393467..1393648,1393681..1393874,1393905..1394100,1394132..1394530,1394560..1394756,1394790..1394906,1394938..1395200)	Theileria parva strain Muguga	3500931
TpMuguga_04g00708	mRNA	TpMuguga_04g00708	NW_876246.1	1395255	1399224	D	TpMuguga_04g00708	join(<1395255..1398513,1398544..1398945,1398977..>1399224)	Theileria parva strain Muguga	3501052
TpMuguga_04g02495	mRNA	DBP8	NW_876246.1	1399286	1401434	D	TpMuguga_04g02495	join(1399286..1399977,1400006..1400079,1400110..1400167,1400198..1400285,1400317..1400387,1400418..1400554,1400585..1400676,1400707..1400825,1400855..1400987,1401021..1401076,1401107..1401167,1401197..1401260,1401293..1401434)	Theileria parva strain Muguga	3501054
TpMuguga_04g00711	mRNA	RPLP1	NW_876246.1	1401501	1402215	D	TpMuguga_04g00711	join(1401501..1401600,1401802..1402215)	Theileria parva strain Muguga	3501055
TpMuguga_04g00712	mRNA	TpMuguga_04g00712	NW_876246.1	1402218	1402931	D	TpMuguga_04g00712	join(1402218..1402489,1402527..1402662,1402694..1402931)	Theileria parva strain Muguga	3501242
TpMuguga_04g00713	mRNA	TpMuguga_04g00713	NW_876246.1	1402878	1404312	R	TpMuguga_04g00713	complement(join(1402878..1403292,1403323..1404312))	Theileria parva strain Muguga	3501243
TpMuguga_04g00714	mRNA	vapA	NW_876246.1	1404868	1407283	D	TpMuguga_04g00714	join(1404868..1405000,1405066..1405194,1405279..1405564,1405598..1405775,1405807..1405917,1405948..1406332,1406408..1406908,1406940..1407283)	Theileria parva strain Muguga	3501244
TpMuguga_04g00715	mRNA	TpMuguga_04g00715	NW_876246.1	1407053	1407918	R	TpMuguga_04g00715	complement(join(1407053..1407548,1407578..1407721,1407752..1407918))	Theileria parva strain Muguga	3501245
TpMuguga_04g00716	mRNA	TpMuguga_04g00716	NW_876246.1	1408036	1411161	D	TpMuguga_04g00716	join(1408036..1408539,1408570..1410877,1410911..1411065,1411102..>1411161)	Theileria parva strain Muguga	3501246
TpMuguga_04g00717	mRNA	TpMuguga_04g00717	NW_876246.1	1411135	1412107	R	TpMuguga_04g00717	complement(join(1411135..1411452,1411479..1411658,1411697..1412107))	Theileria parva strain Muguga	3501247
TpMuguga_04g00718	mRNA	TpMuguga_04g00718	NW_876246.1	1412069	1413402	D	TpMuguga_04g00718	1412069..1413402	Theileria parva strain Muguga	3501255
TpMuguga_04g00719	mRNA	bkdA	NW_876246.1	1413519	1415328	R	TpMuguga_04g00719	complement(join(1413519..1413715,1413746..1413927,1413959..1414050,1414083..1414187,1414219..1414569,1414599..1414791,1414821..1415328))	Theileria parva strain Muguga	3501256
TpMuguga_04g00720	mRNA	TpMuguga_04g00720	NW_876246.1	1415543	1416553	D	TpMuguga_04g00720	join(1415543..1416354,1416385..>1416553)	Theileria parva strain Muguga	3501257
TpMuguga_04g00722	mRNA	TpMuguga_04g00722	NW_876246.1	1416534	1417613	R	TpMuguga_04g00722	complement(join(1416534..1416596,1416626..1416741,1416776..1416911,1416942..1417050,1417079..1417217,1417251..1417613))	Theileria parva strain Muguga	3501259
TpMuguga_04g00723	mRNA	TpMuguga_04g00723	NW_876246.1	1417650	1419225	D	TpMuguga_04g00723	join(1417650..1418737,1418768..1418833,1418865..1419031,1419064..1419106,1419143..1419225)	Theileria parva strain Muguga	3501260
TpMuguga_04g00724	mRNA	TpMuguga_04g00724	NW_876246.1	1419227	1419981	D	TpMuguga_04g00724	join(1419227..1419391,1419430..1419574,1419691..1419771,1419800..1419981)	Theileria parva strain Muguga	3501261
TpMuguga_04g00725	mRNA	Slc1a3	NW_876246.1	1419699	1421595	R	TpMuguga_04g00725	complement(1419699..1421595)	Theileria parva strain Muguga	3501292
TpMuguga_04g00726	mRNA	TpMuguga_04g00726	NW_876246.1	1421672	1423186	R	TpMuguga_04g00726	complement(join(1421672..1422142,1422173..1422634,1422664..1423186))	Theileria parva strain Muguga	3501293
TpMuguga_04g00727	mRNA	DHH1	NW_876246.1	1423130	1425633	D	TpMuguga_04g00727	join(1423130..1423318,1423355..1425633)	Theileria parva strain Muguga	3501294
TpMuguga_04g00728	mRNA	TAF14B	NW_876246.1	1425571	1426690	R	TpMuguga_04g00728	complement(join(1425571..1425759,1425789..1425867,1425898..1426013,1426045..1426195,1426226..1426344,1426375..1426507,1426568..1426690))	Theileria parva strain Muguga	3501295
TpMuguga_04g02660	mRNA	TpMuguga_04g02660	NW_876246.1	1426709	1428157	D	TpMuguga_04g02660	join(1426709..1427461,1427500..1427745,1427778..1427813,1427846..1427915,1427964..>1428157)	Theileria parva strain Muguga	3501297
TpMuguga_04g00731	mRNA	Atp6v0a1	NW_876246.1	1428358	1431473	D	TpMuguga_04g00731	1428358..1431473	Theileria parva strain Muguga	3501298
TpMuguga_04g00732	mRNA	engB	NW_876246.1	1431427	1433080	R	TpMuguga_04g00732	complement(join(1431427..1431704,1431816..1432642,1432731..>1433080))	Theileria parva strain Muguga	3501056
TpMuguga_04g00733	mRNA	rplC	NW_876246.1	1433086	1434187	R	TpMuguga_04g00733	complement(join(<1433086..1433866,1433917..1434187))	Theileria parva strain Muguga	3501057
TpMuguga_04g00734	mRNA	TpMuguga_04g00734	NW_876246.1	1434309	1435864	R	TpMuguga_04g00734	complement(join(1434309..1434411,1434446..1434697,1434729..1434857,1434889..1434999,1435044..1435194,1435224..1435519,1435549..1435645,1435683..1435864))	Theileria parva strain Muguga	3501058
TpMuguga_04g00735	mRNA	nup98	NW_876246.1	1435761	1439103	D	TpMuguga_04g00735	1435761..>1439103	Theileria parva strain Muguga	3501059
TpMuguga_04g00736	mRNA	RPS21	NW_876246.1	1439136	1439719	D	TpMuguga_04g00736	join(1439136..1439473,1439569..1439719)	Theileria parva strain Muguga	3501060
TpMuguga_04g00737	mRNA	TpMuguga_04g00737	NW_876246.1	1439525	1440315	R	TpMuguga_04g00737	complement(join(1439525..1439739,1439801..1439916,1439962..1440063,1440129..1440315))	Theileria parva strain Muguga	3501061
TpMuguga_04g00738	mRNA	AMPP	NW_876246.1	1440315	1442833	R	TpMuguga_04g00738	complement(join(1440315..1440467,1440499..1440909,1440996..1441149,1441181..1441251,1441309..1441389,1441419..1441508,1441538..1441718,1441750..1441821,1441854..1441954,1441984..1442240,1442271..1442377,1442408..1442833))	Theileria parva strain Muguga	3500824
TpMuguga_04g00739	mRNA	nip-1	NW_876246.1	1442834	1446042	D	TpMuguga_04g00739	1442834..1446042	Theileria parva strain Muguga	3500825
TpMuguga_04g00740	mRNA	VARS	NW_876246.1	1446192	1449996	R	TpMuguga_04g00740	complement(join(1446192..1446382,1446420..1446575,1446741..1447250,1447413..1448923,1449062..1449279,1449313..1449507,1449538..1449757,1449791..1449996))	Theileria parva strain Muguga	3500826
TpMuguga_04g02355	mRNA	TpMuguga_04g02355	NW_876246.1	1450029	1453866	D	TpMuguga_04g02355	join(1450029..1451267,1451305..1451825,1451892..1452093,1452186..1453381,1453507..1453866)	Theileria parva strain Muguga	3500828
TpMuguga_04g00744	mRNA	TpMuguga_04g00744	NW_876246.1	1454428	1456275	R	TpMuguga_04g00744	complement(join(1454428..1454845,1454875..1454929,1454959..1455011,1455042..1455085,1455151..1455218,1455263..1455396,1455429..1455481,1455512..1455647,1455678..1455726,1455766..1455807,1455840..1455890,1455956..1456275))	Theileria parva strain Muguga	3500655
TpMuguga_04g02280	mRNA	TpMuguga_04g02280	NW_876246.1	1456357	1458019	D	TpMuguga_04g02280	join(1456357..1456640,1456672..1456869,1456899..1457051,1457081..1457189,1457219..1457290,1457359..1457535,1457566..1457612,1457667..1457696,1457728..1457882,1457916..1457956,1458000..>1458019)	Theileria parva strain Muguga	3500656
TpMuguga_04g02665	mRNA	rimM	NW_876246.1	1458046	1459409	D	TpMuguga_04g02665	join(<1458046..1458112,1458143..1458756,1458843..>1459409)	Theileria parva strain Muguga	86047851
TpMuguga_04g00746	mRNA	TpMuguga_04g00746	NW_876246.1	1459270	1460979	R	TpMuguga_04g00746	complement(join(1459270..1459644,1459697..1459856,1459913..1460141,1460252..1460494,1460616..>1460979))	Theileria parva strain Muguga	3500657
TpMuguga_04g00747	mRNA	TpMuguga_04g00747	NW_876246.1	1461122	1463468	R	TpMuguga_04g00747	complement(1461122..1463468)	Theileria parva strain Muguga	3500658
TpMuguga_04g00748	mRNA	TpMuguga_04g00748	NW_876246.1	1463600	1464884	R	TpMuguga_04g00748	complement(join(1463600..1464393,1464524..1464884))	Theileria parva strain Muguga	3500659
TpMuguga_04g00749	mRNA	TpMuguga_04g00749	NW_876246.1	1465037	1465550	R	TpMuguga_04g00749	complement(join(1465037..1465108,1465163..1465550))	Theileria parva strain Muguga	3500517
TpMuguga_04g00750	mRNA	TpMuguga_04g00750	NW_876246.1	1465573	1466458	D	TpMuguga_04g00750	join(1465573..1465725,1465867..1466458)	Theileria parva strain Muguga	3500518
TpMuguga_04g00751	mRNA	U2SURP	NW_876246.1	1466547	1469496	D	TpMuguga_04g00751	join(1466547..1466649,1466690..1466860,1466915..1467032,1467089..1467160,1467192..1467682,1467768..1467816,1467848..1467899,1467929..1468069,1468119..1468326,1468383..1468506,1468540..1468649,1468731..1468785,1468816..1468919,1468989..1469120,1469177..1469496)	Theileria parva strain Muguga	3500519
TpMuguga_04g00752	mRNA	TpMuguga_04g00752	NW_876246.1	1469574	1470237	R	TpMuguga_04g00752	complement(1469574..1470237)	Theileria parva strain Muguga	3500520
TpMuguga_04g00753	mRNA	TpMuguga_04g00753	NW_876246.1	1470403	1472060	D	TpMuguga_04g00753	join(1470403..1470695,1470771..1471095,1471172..1471300,1471371..1471963,1471998..>1472060)	Theileria parva strain Muguga	3500521
TpMuguga_04g00754	mRNA	TpMuguga_04g00754	NW_876246.1	1472155	1473878	D	TpMuguga_04g00754	join(<1472155..1472278,1472366..1473194,1473235..1473324,1473357..1473546,1473579..>1473878)	Theileria parva strain Muguga	3500522
TpMuguga_04g00755	mRNA	ndx-2	NW_876246.1	1473910	1475156	R	TpMuguga_04g00755	complement(join(1473910..1474004,1474064..1474118,1474151..1474249,1474284..1474369,1474411..1474557,1474626..1474775,1474836..1475156))	Theileria parva strain Muguga	3500473
TpMuguga_04g00756	mRNA	TpMuguga_04g00756	NW_876246.1	1475241	1479534	D	TpMuguga_04g00756	join(1475241..1475381,1475461..1475580,1475645..1479534)	Theileria parva strain Muguga	3500474
TpMuguga_04g00757	mRNA	TpMuguga_04g00757	NW_876246.1	1479599	1480985	D	TpMuguga_04g00757	join(1479599..1479650,1479734..1479852,1479966..1480146,1480224..1480409,1480504..1480985)	Theileria parva strain Muguga	3500475
TpMuguga_04g00758	mRNA	TpMuguga_04g00758	NW_876246.1	1481004	1483748	D	TpMuguga_04g00758	join(1481004..1481097,1481216..1481352,1481391..1481464,1481517..1481593,1481625..1481683,1481740..1481940,1482032..1482369,1482434..1482532,1482569..1482635,1482668..1482787,1482847..1482948,1482978..1483061,1483159..1483267,1483301..1483748)	Theileria parva strain Muguga	3500476
TpMuguga_04g00759	mRNA	SPT14	NW_876246.1	1483264	1485476	R	TpMuguga_04g00759	complement(join(1483264..1483452,1483505..1483574,1483606..1483693,1483726..1483767,1483848..1483964,1483999..1484054,1484089..1484184,1484216..1484293,1484371..1484527,1484609..1484731,1484762..1484881,1484999..1485198,1485237..1485476))	Theileria parva strain Muguga	3500477
TpMuguga_04g02070	mRNA	TpMuguga_04g02070	NW_876246.1	1485498	1488235	R	TpMuguga_04g02070	complement(join(1485498..1485567,1485680..1486315,1486385..1486502,1486535..1486653,1486725..1486943,1487005..1487181,1487238..1487427,1487477..1487646,1487679..1487761,1487839..1487933,1488073..1488235))	Theileria parva strain Muguga	3501379
TpMuguga_04g02615	mRNA	psmd11	NW_876246.1	1488260	1490139	R	TpMuguga_04g02615	complement(1488260..1490139)	Theileria parva strain Muguga	86047847
TpMuguga_04g02310	mRNA	TpMuguga_04g02310	NW_876246.1	1490239	1491363	R	TpMuguga_04g02310	complement(join(1490239..1490379,1490434..1490503,1490631..1490731,1490771..1490967,1491001..1491112,1491145..1491363))	Theileria parva strain Muguga	3501382
TpMuguga_04g00764	mRNA	DER2.1	NW_876246.1	1491447	1492571	D	TpMuguga_04g00764	join(1491447..1491986,1492087..1492314,1492345..1492571)	Theileria parva strain Muguga	3501383
TpMuguga_04g00765	mRNA	TpMuguga_04g00765	NW_876246.1	1492586	1494009	R	TpMuguga_04g00765	complement(join(1492586..1492691,1492726..1492801,1492830..1492941,1492972..1493044,1493074..1493127,1493162..1493236,1493271..1493334,1493364..1493423,1493456..1493532,1493574..1493641,1493715..1493814,1493864..1493935,1493965..>1494009))	Theileria parva strain Muguga	3501384
TpMuguga_04g00766	mRNA	sqd	NW_876246.1	1494043	1496346	R	TpMuguga_04g00766	complement(join(1494043..1494701,1494776..1495414,1495508..1495658,1495705..1495868,1495898..1495975,1496037..>1496346))	Theileria parva strain Muguga	3501385
TpMuguga_04g00767	mRNA	USP14	NW_876246.1	1496618	1498549	R	TpMuguga_04g00767	complement(join(1496618..1497138,1497169..1497642,1497676..1497701,1497736..1497790,1497821..1498018,1498099..1498327,1498385..1498549))	Theileria parva strain Muguga	3501386
TpMuguga_04g02325	mRNA	TpMuguga_04g02325	NW_876246.1	1498627	1500137	D	TpMuguga_04g02325	join(1498627..1498789,1498867..1498980,1499010..1499192,1499227..1499476,1499507..1499566,1499660..1499757,1499789..1500137)	Theileria parva strain Muguga	3501388
TpMuguga_04g00770	mRNA	METAP1	NW_876246.1	1500181	1501519	R	TpMuguga_04g00770	complement(join(1500181..1500378,1500408..1500455,1500486..1500657,1500687..1500757,1500787..1500876,1500906..1501025,1501067..1501279,1501330..1501519))	Theileria parva strain Muguga	3501389
TpMuguga_04g02635	mRNA	TpMuguga_04g02635	NW_876246.1	1501595	1502354	D	TpMuguga_04g02635	join(1501595..1501700,1501742..1501796,1501830..1501896,1501932..1501961,1501993..1502097,1502129..1502354)	Theileria parva strain Muguga	86047849
TpMuguga_04g00771	mRNA	RPL26A	NW_876246.1	1502365	1503116	R	TpMuguga_04g00771	complement(join(1502365..1502782,1502843..1502893,1503033..1503116))	Theileria parva strain Muguga	3500932
TpMuguga_04g00772	mRNA	corA	NW_876246.1	1504150	1506551	R	TpMuguga_04g00772	complement(join(1504150..1504375,1504405..1504752,1504783..1505089,1505122..1505199,1505230..1505395,1505429..1505500,1505537..1505624,1505659..1505750,1505859..1505920,1505962..1506551))	Theileria parva strain Muguga	3500935
TpMuguga_04g00773	mRNA	TpMuguga_04g00773	NW_876246.1	1506819	1508372	D	TpMuguga_04g00773	<1506819..>1508372	Theileria parva strain Muguga	3500936
TpMuguga_04g00774	mRNA	ddx27	NW_876246.1	1508506	1510883	D	TpMuguga_04g00774	join(1508506..1508697,1508798..1508995,1509037..1509136,1509166..1509242,1509283..1509414,1509445..1509552,1509584..1509661,1509695..1509949,1509980..1510089,1510120..1510233,1510265..1510557,1510588..1510883)	Theileria parva strain Muguga	3500937
TpMuguga_04g00775	mRNA	TpMuguga_04g00775	NW_876246.1	1511009	1513128	D	TpMuguga_04g00775	join(1511009..1512585,1512617..1512746,1512777..1513128)	Theileria parva strain Muguga	3500938
TpMuguga_04g00776	mRNA	trpS	NW_876246.1	1513148	1514730	R	TpMuguga_04g00776	complement(join(1513148..1513214,1513244..1513340,1513370..1513529,1513561..1513694,1513723..1513883,1513914..1513999,1514031..1514189,1514221..1514335,1514431..1514730))	Theileria parva strain Muguga	3501145
TpMuguga_04g02460	mRNA	TOUSLED	NW_876246.1	1514806	1518226	D	TpMuguga_04g02460	join(1514806..1515259,1515297..1515511,1515542..1515641,1515673..1515708,1515739..1516336,1516371..1516512,1516551..1517380,1517415..1517496,1517528..1517576,1517609..1517677,1517707..1517826,1517857..1517906,1517935..1517975,1518029..1518099,1518130..1518226)	Theileria parva strain Muguga	3501147
TpMuguga_04g00779	mRNA	TpMuguga_04g00779	NW_876246.1	1517992	1519092	R	TpMuguga_04g00779	complement(1517992..1519092)	Theileria parva strain Muguga	3501148
TpMuguga_04g00780	mRNA	TpMuguga_04g00780	NW_876246.1	1519155	1522116	D	TpMuguga_04g00780	join(1519155..1519454,1519487..1519941,1520017..1520186,1520219..1520606,1520647..1520731,1520762..1520968,1521001..1521045,1521077..1521157,1521188..1521297,1521329..1521476,1521517..1521628,1521658..1521904,1521940..>1522116)	Theileria parva strain Muguga	86047797
TpMuguga_04g00781	mRNA	TpMuguga_04g00781	NW_876246.1	1520782	1522253	D	TpMuguga_04g00781	join(<1520782..1520968,1521001..1521045,1521077..1521157,1521188..1521297,1521329..1521476,1521517..1521628,1521658..1521904,1521940..1522105,1522168..>1522253)	Theileria parva strain Muguga	3501216
TpMuguga_04g02110	mRNA	TpMuguga_04g02110	NW_876246.1	1522226	1523091	R	TpMuguga_04g02110	complement(join(1522226..1522285,1522346..1522581,1522656..1522809,1522891..1523091))	Theileria parva strain Muguga	86047811
TpMuguga_04g02360	mRNA	TpMuguga_04g02360	NW_876246.1	1523576	1523728	R	TpMuguga_04g02360	complement(<1523576..>1523728)	Theileria parva strain Muguga	86047831
TpMuguga_04g00782	mRNA	TpMuguga_04g00782	NW_876246.1	1524124	1525259	R	TpMuguga_04g00782	complement(join(<1524124..1524561,1525203..>1525259))	Theileria parva strain Muguga	3501218
TpMuguga_04g00783	mRNA	VPS26A	NW_876246.1	1525404	1526713	R	TpMuguga_04g00783	complement(join(1525404..1525681,1525712..1525947,1525979..1526108,1526141..1526206,1526236..1526332,1526365..1526481,1526560..1526713))	Theileria parva strain Muguga	3501219
TpMuguga_04g00784	mRNA	TpMuguga_04g00784	NW_876246.1	1526822	1531638	R	TpMuguga_04g00784	complement(1526822..>1531638)	Theileria parva strain Muguga	3501220
TpMuguga_04g00785	mRNA	TpMuguga_04g00785	NW_876246.1	1531974	1535099	D	TpMuguga_04g00785	1531974..1535099	Theileria parva strain Muguga	3501221
TpMuguga_04g00786	mRNA	TpMuguga_04g00786	NW_876246.1	1535092	1536976	R	TpMuguga_04g00786	complement(join(1535092..1536036,1536066..1536976))	Theileria parva strain Muguga	3501222
TpMuguga_04g00787	mRNA	TpMuguga_04g00787	NW_876246.1	1537021	1539741	R	TpMuguga_04g00787	complement(join(1537021..1537612,1537644..1537730,1537760..1538458,1538492..1538565,1538598..1538920,1538954..1539017,1539049..1539268,1539302..1539427,1539465..1539741))	Theileria parva strain Muguga	3501275
TpMuguga_04g00788	mRNA	era	NW_876246.1	1539813	1541970	D	TpMuguga_04g00788	join(1539813..1540076,1540171..1540301,1540337..1540412,1540444..1540517,1540547..1540631,1540661..1540733,1540764..1540825,1540895..1540962,1541002..1541107,1541139..1541302,1541344..1541396,1541426..1541549,1541579..1541622,1541653..1541755,1541785..1541970)	Theileria parva strain Muguga	3501276
TpMuguga_04g00789	mRNA	TpMuguga_04g00789	NW_876246.1	1542084	1543120	R	TpMuguga_04g00789	complement(join(<1542084..1542114,1542147..1542202,1542239..1542314,1542345..1542481,1542538..1542612,1542648..1542736,1542774..1542859,1542893..1543120))	Theileria parva strain Muguga	3501277
TpMuguga_04g00790	mRNA	TpMuguga_04g00790	NW_876246.1	1543103	1544358	R	TpMuguga_04g00790	complement(1543103..>1544358)	Theileria parva strain Muguga	3501278
TpMuguga_04g00791	mRNA	PHO85	NW_876246.1	1545375	1547523	R	TpMuguga_04g00791	complement(join(<1545375..1545834,1545874..1546040,1546069..1546287,1546316..1546440,1546476..1546622,1546662..1546710,1546740..1547523))	Theileria parva strain Muguga	3501279
TpMuguga_04g00926	mRNA	TpMuguga_04g00926	NW_876246.1	1547622	1548313	R	TpMuguga_04g00926	complement(join(1547622..1547714,1547752..1547815,1547855..1547941,1547982..1548138,1548194..1548313))	Theileria parva strain Muguga	3500982
TpMuguga_04g02610	mRNA	PRPF38B	NW_876246.1	1548294	1550174	R	TpMuguga_04g02610	complement(join(1548294..1548387,1548419..1548791,1548824..1548965,1549035..1549164,1549195..1549281,1549312..1549459,1549491..1549565,1549595..1549715,1549747..1549821,1549862..1550174))	Theileria parva strain Muguga	3500984
TpMuguga_04g00794	mRNA	TpMuguga_04g00794	NW_876246.1	1550231	1551470	D	TpMuguga_04g00794	join(1550231..1550729,1550761..1551042,1551073..1551189,1551221..1551470)	Theileria parva strain Muguga	3500985
TpMuguga_04g00795	mRNA	MED36B	NW_876246.1	1551437	1552610	R	TpMuguga_04g00795	complement(join(1551437..1551595,1551627..1551858,1551888..1551997,1552028..1552151,1552185..1552384,1552429..1552479,1552533..1552610))	Theileria parva strain Muguga	3500986
TpMuguga_04g00796	mRNA	PRSS12	NW_876246.1	1552611	1557299	R	TpMuguga_04g00796	complement(join(1552611..1552818,1552853..1552908,1552944..1553045,1553081..1553167,1553204..1553714,1553744..1553853,1553885..1554028,1554057..1554164,1554194..1554268,1554299..1554373,1554403..1554562,1554596..1554647,1554690..1554954,1554986..1555085,1555115..1555197,1555229..1555430,1555462..1555562,1555594..1555655,1555688..1555754,1555786..1555827,1555857..1555925,1555956..1556021,1556054..1556202,1556234..1556824,1556854..1556937,1556969..1557035,1557104..1557299))	Theileria parva strain Muguga	3500880
TpMuguga_04g00797	mRNA	cfr	NW_876246.1	1557440	1559146	R	TpMuguga_04g00797	complement(join(1557440..1557549,1557594..1557643,1557675..1557712,1557747..1557802,1557855..1557962,1557994..1558099,1558129..1558182,1558219..1558370,1558403..1558541,1558581..1559146))	Theileria parva strain Muguga	3500881
TpMuguga_04g00798	mRNA	TpMuguga_04g00798	NW_876246.1	1559256	1560665	D	TpMuguga_04g00798	join(1559256..1559487,1559682..1560035,1560067..1560374,1560408..1560665)	Theileria parva strain Muguga	3500882
TpMuguga_04g00799	mRNA	VPS29	NW_876246.1	1560648	1561466	R	TpMuguga_04g00799	complement(join(1560648..1561081,1561121..1561466))	Theileria parva strain Muguga	3500883
TpMuguga_04g00800	mRNA	clpC	NW_876246.1	1561484	1564573	R	TpMuguga_04g00800	complement(join(1561484..1561698,1561757..1562632,1562663..1562793,1562824..1562936,1562967..1563111,1563142..1563263,1563298..1563496,1563527..1564032,1564062..1564573))	Theileria parva strain Muguga	3500875
TpMuguga_04g00801	mRNA	TpMuguga_04g00801	NW_876246.1	1564700	1566467	R	TpMuguga_04g00801	complement(join(1564700..1565870,1565935..1566467))	Theileria parva strain Muguga	3500876
TpMuguga_04g00802	mRNA	AE7	NW_876246.1	1566444	1567359	R	TpMuguga_04g00802	complement(join(1566444..1566576,1566652..1566753,1566786..1566870,1566911..1567063,1567096..1567359))	Theileria parva strain Muguga	3500877
TpMuguga_04g00803	mRNA	TpMuguga_04g00803	NW_876246.1	1567424	1569208	R	TpMuguga_04g00803	complement(join(1567424..1567540,1567573..1567782,1567814..1567919,1567951..1568030,1568061..1568290,1568323..1568390,1568423..1568502,1568535..1568567,1568599..1569208))	Theileria parva strain Muguga	3500878
TpMuguga_04g02605	mRNA	SET1	NW_876246.1	1570264	1582432	D	TpMuguga_04g02605	join(<1570264..1570951,1570985..1573374,1573405..1574352,1574518..1577532,1577566..1577769,1577934..1581370,1581588..1581708,1581738..1582100,1582221..1582328,1582358..>1582432)	Theileria parva strain Muguga	3500879
TpMuguga_04g00806	mRNA	COQ5	NW_876246.1	1582555	1583786	R	TpMuguga_04g00806	complement(join(1582555..1583207,1583318..1583786))	Theileria parva strain Muguga	3500705
TpMuguga_04g00807	mRNA	Ufsp2	NW_876246.1	1583787	1586242	R	TpMuguga_04g00807	complement(join(1583787..1583881,1583911..1584002,1584052..1584430,1584487..1584585,1584645..1585715,1585767..1586029,1586077..1586242))	Theileria parva strain Muguga	3500706
TpMuguga_04g00808	mRNA	TpMuguga_04g00808	NW_876246.1	1586321	1588202	D	TpMuguga_04g00808	join(1586321..1586587,1586625..1588202)	Theileria parva strain Muguga	3500707
TpMuguga_04g00809	mRNA	TpMuguga_04g00809	NW_876246.1	1587905	1590233	R	TpMuguga_04g00809	complement(join(1587905..1588180,1588214..1588324,1588387..1588474,1588521..1588808,1588871..1588933,1588961..1589134,1589171..1589271,1589385..1589632,1589663..1589948,1590007..1590066,1590128..>1590233))	Theileria parva strain Muguga	3500708
TpMuguga_04g00810	mRNA	YTM1	NW_876246.1	1590333	1592317	R	TpMuguga_04g00810	complement(join(1590333..1590549,1590625..1590909,1590941..1591057,1591089..1591155,1591186..1591232,1591273..1591366,1591397..1591513,1591544..1591664,1591694..1591830,1591881..1591966,1592020..1592317))	Theileria parva strain Muguga	3500709
TpMuguga_04g02235	mRNA	SETVS	NW_876246.1	1592403	1596706	D	TpMuguga_04g02235	join(1592403..1595513,1595543..1595605,1595740..1595805,1595879..1595965,1596052..1596197,1596343..1596706)	Theileria parva strain Muguga	3500667
TpMuguga_04g02125	mRNA	pol2	NW_876246.1	1597015	1605787	D	TpMuguga_04g02125	join(<1597015..1600018,1600095..1601383,1601506..1601866,1602026..1602173,1602303..1602453,1602518..1602724,1602792..1602883,1602926..1603106,1603203..1603490,1603597..1603758,1603875..1604078,1604108..1604256,1604422..1604824,1604928..1605001,1605048..1605161,1605214..1605304,1605519..1605583,1605621..1605665,1605697..>1605787)	Theileria parva strain Muguga	3500669
TpMuguga_04g00815	mRNA	TpMuguga_04g00815	NW_876246.1	1605570	1606558	R	TpMuguga_04g00815	complement(join(1605570..1605796,1605896..1605929,1605959..1605998,1606045..1606144,1606174..1606213,1606262..1606324,1606457..1606558))	Theileria parva strain Muguga	3500670
TpMuguga_04g00816	mRNA	TpMuguga_04g00816	NW_876246.1	1606622	1608022	D	TpMuguga_04g00816	join(1606622..1606770,1606813..1606903,1606946..1606999,1607154..1607214,1607244..1607283,1607315..1607394,1607424..1607475,1607506..1607568,1607598..1607626,1607655..1607731,1607760..1607838,1607870..1608022)	Theileria parva strain Muguga	3501396
TpMuguga_04g00817	mRNA	TpMuguga_04g00817	NW_876246.1	1608652	1609793	R	TpMuguga_04g00817	complement(join(1608652..1608819,1608918..1609047,1609141..1609246,1609275..1609793))	Theileria parva strain Muguga	3501397
TpMuguga_04g00818	mRNA	Prkaa2	NW_876246.1	1609791	1612480	D	TpMuguga_04g00818	join(1609791..1610050,1610491..1610688,1610825..1610934,1611054..1611145,1611174..1611364,1611719..1612129,1612214..1612379,1612408..1612480)	Theileria parva strain Muguga	3501398
TpMuguga_04g00819	mRNA	TpMuguga_04g00819	NW_876246.1	1612735	1615137	R	TpMuguga_04g00819	complement(<1612735..1615137)	Theileria parva strain Muguga	3501399
TpMuguga_04g00820	mRNA	TpMuguga_04g00820	NW_876246.1	1614467	1617482	D	TpMuguga_04g00820	1614467..1617482	Theileria parva strain Muguga	3501400
TpMuguga_04g00821	mRNA	HAS1	NW_876246.1	1617971	1620568	R	TpMuguga_04g00821	complement(join(1617971..1618162,1618315..1618599,1618703..1618756,1618882..1619142,1619480..1619961,1620156..1620568))	Theileria parva strain Muguga	3500619
TpMuguga_04g00822	mRNA	TpMuguga_04g00822	NW_876246.1	1620627	1623706	D	TpMuguga_04g00822	join(<1620627..1622784,1623396..>1623706)	Theileria parva strain Muguga	3500620
TpMuguga_04g00823	mRNA	Gtf2h3	NW_876246.1	1623881	1625897	D	TpMuguga_04g00823	join(<1623881..1624149,1624470..1624699,1625024..1625154,1625185..1625223,1625321..1625437,1625480..1625615,1625708..1625765,1625797..1625897)	Theileria parva strain Muguga	3500621
TpMuguga_04g00824	mRNA	ERD2	NW_876246.1	1626619	1628188	R	TpMuguga_04g00824	complement(join(<1626619..1626965,1627054..1627232,1627760..1628188))	Theileria parva strain Muguga	3500622
TpMuguga_04g00825	mRNA	TpMuguga_04g00825	NW_876246.1	1628411	1632921	R	TpMuguga_04g00825	complement(join(1628411..1628504,1628693..1628751,1629280..1631175,1631492..1632921))	Theileria parva strain Muguga	3500623
TpMuguga_04g00826	mRNA	TpMuguga_04g00826	NW_876246.1	1632939	1634173	D	TpMuguga_04g00826	join(1632939..1633082,1633161..1633267,1633308..1633403,1633509..1633548,1633600..1633714,1633744..1633833,1633933..1633966,1633997..1634173)	Theileria parva strain Muguga	3500624
TpMuguga_04g00827	mRNA	PAC1	NW_876246.1	1634059	1635368	R	TpMuguga_04g00827	complement(join(<1634059..1634292,1634527..1634700,1634845..1635368))	Theileria parva strain Muguga	3501347
TpMuguga_04g00828	mRNA	psmA7	NW_876246.1	1635434	1637108	D	TpMuguga_04g00828	join(1635434..1635819,1635863..1635950,1636001..1636090,1636582..1636731,1636887..>1637108)	Theileria parva strain Muguga	3501348
TpMuguga_04g00829	mRNA	RING1A	NW_876246.1	1637232	1639048	D	TpMuguga_04g00829	join(1637232..1637656,1637814..1637919,1638026..1638071,1638101..1638187,1638398..1638579,1638716..1638814,1638844..1638897,1638961..1639048)	Theileria parva strain Muguga	3501349
TpMuguga_04g00830	mRNA	TpMuguga_04g00830	NW_876246.1	1638999	1639641	R	TpMuguga_04g00830	complement(1638999..1639641)	Theileria parva strain Muguga	3501350
TpMuguga_04g00831	mRNA	spb1	NW_876246.1	1639652	1642953	R	TpMuguga_04g00831	complement(join(1639652..1642127,1642372..1642555,1642658..1642953))	Theileria parva strain Muguga	3501351
TpMuguga_04g00832	mRNA	Atp6v0b	NW_876246.1	1642917	1643870	R	TpMuguga_04g00832	complement(join(1642917..1643045,1643074..1643177,1643207..1643488,1643620..1643870))	Theileria parva strain Muguga	3501352
TpMuguga_04g00833	mRNA	TpMuguga_04g00833	NW_876246.1	1643913	1644816	D	TpMuguga_04g00833	1643913..1644816	Theileria parva strain Muguga	3500497
TpMuguga_04g00834	mRNA	TpMuguga_04g00834	NW_876246.1	1644970	1646780	D	TpMuguga_04g00834	join(<1644970..1645396,1645445..1645835,1645895..1646025,1646057..1646780)	Theileria parva strain Muguga	3500498
TpMuguga_04g00835	mRNA	TpMuguga_04g00835	NW_876246.1	1646850	1649948	D	TpMuguga_04g00835	1646850..>1649948	Theileria parva strain Muguga	3500500
TpMuguga_04g00836	mRNA	RPS10	NW_876246.1	1650041	1650690	R	TpMuguga_04g00836	complement(join(1650041..1650332,1650364..1650690))	Theileria parva strain Muguga	3500501
TpMuguga_04g00837	mRNA	TpMuguga_04g00837	NW_876246.1	1650760	1652572	D	TpMuguga_04g00837	join(1650760..1651572,1651799..1652572)	Theileria parva strain Muguga	3500502
TpMuguga_04g00838	mRNA	Rbm34	NW_876246.1	1652569	1653928	D	TpMuguga_04g00838	join(1652569..1652951,1652983..1653074,1653115..1653267,1653298..1653357,1653389..1653488,1653520..1653560,1653591..1653668,1653709..1653928)	Theileria parva strain Muguga	3500503
TpMuguga_04g00839	mRNA	TpMuguga_04g00839	NW_876246.1	1653956	1654432	D	TpMuguga_04g00839	<1653956..>1654432	Theileria parva strain Muguga	3500650
TpMuguga_04g00840	mRNA	TpMuguga_04g00840	NW_876246.1	1654646	1655055	D	TpMuguga_04g00840	join(<1654646..1654861,1654892..1654978,1655011..>1655055)	Theileria parva strain Muguga	3500651
TpMuguga_04g00841	mRNA	TpMuguga_04g00841	NW_876246.1	1655546	1655869	D	TpMuguga_04g00841	join(<1655546..1655604,1655634..1655742,1655795..>1655869)	Theileria parva strain Muguga	3500652
TpMuguga_04g00842	mRNA	TpMuguga_04g00842	NW_876246.1	1656162	1657918	D	TpMuguga_04g00842	join(<1656162..1656250,1656291..1656336,1656367..1656399,1657431..1657590,1657642..1657694,1657817..>1657918)	Theileria parva strain Muguga	3500653
TpMuguga_04g02475	mRNA	TpMuguga_04g02475	NW_876246.1	1658242	1659442	D	TpMuguga_04g02475	join(1658242..1658458,1658498..1658551,1658618..1658644,1658677..1658763,1658792..1658867,1658900..1658946,1658977..1659021,1659057..>1659442)	Theileria parva strain Muguga	3500654
TpMuguga_04g02335	mRNA	TpMuguga_04g02335	NW_876246.1	1659481	1660758	D	TpMuguga_04g02335	join(1659481..1659848,1659879..1660219,1660252..1660355,1660418..1660579,1660662..1660758)	Theileria parva strain Muguga	86047829
TpMuguga_04g00844	mRNA	RPS7	NW_876246.1	1660981	1661853	R	TpMuguga_04g00844	complement(join(1660981..1661178,1661257..1661853))	Theileria parva strain Muguga	3500710
TpMuguga_04g00845	mRNA	TpMuguga_04g00845	NW_876246.1	1662164	1664603	D	TpMuguga_04g00845	join(1662164..1663532,1663601..1663683,1663719..1663859,1663892..1664603)	Theileria parva strain Muguga	3500711
TpMuguga_04g00846	mRNA	TpMuguga_04g00846	NW_876246.1	1664610	1665715	D	TpMuguga_04g00846	1664610..1665715	Theileria parva strain Muguga	3500712
TpMuguga_04g00847	mRNA	TpMuguga_04g00847	NW_876246.1	1665572	1667340	R	TpMuguga_04g00847	complement(join(1665572..1665704,1665792..1665897,1665927..1665987,1666019..1666083,1666114..1666153,1666186..1666255,1666285..1666336,1666369..1666509,1666538..1666825,1666858..1667015,1667063..1667340))	Theileria parva strain Muguga	3500713
TpMuguga_04g00848	mRNA	rio2	NW_876246.1	1667432	1669137	D	TpMuguga_04g00848	join(1667432..1667864,1667897..1668108,1668141..1668285,1668317..1668437,1668488..1668602,1668633..1668907,1668938..1669137)	Theileria parva strain Muguga	3500714
TpMuguga_04g00849	mRNA	TpMuguga_04g00849	NW_876246.1	1669126	1670372	R	TpMuguga_04g00849	complement(1669126..1670372)	Theileria parva strain Muguga	3500715
TpMuguga_04g00850	mRNA	TpMuguga_04g00850	NW_876246.1	1670751	1672261	D	TpMuguga_04g00850	join(1670751..1670873,1670905..1671163,1671194..1671209,1671238..1671553,1671585..1671628,1671666..1671690,1671720..1671824,1671855..1671946,1671987..1672057,1672091..1672182,1672217..>1672261)	Theileria parva strain Muguga	3500761
TpMuguga_04g00851	mRNA	TpMuguga_04g00851	NW_876246.1	1672214	1673514	R	TpMuguga_04g00851	complement(join(1672214..1672543,1672572..1672682,1672712..1672774,1672804..1672944,1672975..1673150,1673188..1673277,1673313..>1673514))	Theileria parva strain Muguga	3500762
TpMuguga_04g02585	mRNA	tsaD	NW_876246.1	1673596	1675787	D	TpMuguga_04g02585	join(1673596..1673945,1673980..1674119,1674151..1674365,1674401..1674540,1674572..1674694,1674723..1674847,1674909..1674998,1675028..1675607,1675637..1675787)	Theileria parva strain Muguga	3500763
TpMuguga_04g00854	mRNA	TpMuguga_04g00854	NW_876246.1	1675739	1677119	R	TpMuguga_04g00854	complement(1675739..1677119)	Theileria parva strain Muguga	3500765
TpMuguga_04g00855	mRNA	ABCE2	NW_876246.1	1677110	1679495	R	TpMuguga_04g00855	complement(join(1677110..1677374,1677409..1677510,1677540..1677896,1677929..1678068,1678100..1678185,1678216..1678621,1678652..1678876,1678912..1679120,1679206..1679495))	Theileria parva strain Muguga	3500766
TpMuguga_04g00856	mRNA	TpMuguga_04g00856	NW_876246.1	1679662	1680414	D	TpMuguga_04g00856	<1679662..>1680414	Theileria parva strain Muguga	3500918
TpMuguga_04g00857	mRNA	TpMuguga_04g00857	NW_876246.1	1680521	1680844	D	TpMuguga_04g00857	<1680521..>1680844	Theileria parva strain Muguga	3500919
TpMuguga_04g00858	mRNA	TpMuguga_04g00858	NW_876246.1	1680851	1681678	R	TpMuguga_04g00858	complement(1680851..1681678)	Theileria parva strain Muguga	3500920
TpMuguga_04g00859	mRNA	TpMuguga_04g00859	NW_876246.1	1681940	1683484	D	TpMuguga_04g00859	join(1681940..1682290,1682325..1682449,1682489..1682566,1682602..1682691,1682721..1682815,1682845..1682937,1682969..1683103,1683138..1683206,1683242..1683314,1683349..1683484)	Theileria parva strain Muguga	3500921
TpMuguga_04g02265	mRNA	srp68	NW_876246.1	1683472	1685579	D	TpMuguga_04g02265	join(1683472..1683648,1683684..1683861,1683901..1683988,1684027..1684143,1684175..1684726,1684757..1684796,1684826..1684912,1684943..1685244,1685276..1685483,1685514..1685579)	Theileria parva strain Muguga	3500922
TpMuguga_04g00862	mRNA	TpMuguga_04g00862	NW_876246.1	1685576	1686256	R	TpMuguga_04g00862	complement(1685576..1686256)	Theileria parva strain Muguga	3500924
TpMuguga_04g00863	mRNA	TpMuguga_04g00863	NW_876246.1	1686415	1687200	R	TpMuguga_04g00863	complement(1686415..1687200)	Theileria parva strain Muguga	3501268
TpMuguga_04g02415	mRNA	TpMuguga_04g02415	NW_876246.1	1687208	1688445	D	TpMuguga_04g02415	join(1687208..1687895,1687928..1688008,1688043..1688090,1688129..1688204,1688240..1688319,1688359..>1688445)	Theileria parva strain Muguga	3501269
TpMuguga_04g02340	mRNA	rsmE	NW_876246.1	1688436	1689575	D	TpMuguga_04g02340	join(1688436..1688711,1688743..1688824,1688856..1689575)	Theileria parva strain Muguga	3501270
TpMuguga_04g00866	mRNA	TpMuguga_04g00866	NW_876246.1	1689484	1693687	R	TpMuguga_04g00866	complement(join(1689484..1689871,1689907..1690008,1690039..1692780,1692812..1693687))	Theileria parva strain Muguga	3501271
TpMuguga_04g00867	mRNA	TpMuguga_04g00867	NW_876246.1	1693747	1694394	D	TpMuguga_04g00867	1693747..1694394	Theileria parva strain Muguga	3501272
TpMuguga_04g00868	mRNA	TBCD	NW_876246.1	1694226	1698998	R	TpMuguga_04g00868	complement(1694226..1698998)	Theileria parva strain Muguga	3501273
TpMuguga_04g00869	mRNA	TpMuguga_04g00869	NW_876246.1	1699025	1700463	R	TpMuguga_04g00869	complement(join(1699025..1699186,1699372..1699488,1699521..1699592,1699628..1699707,1699741..1699839,1699871..1699897,1699927..1700203,1700237..1700368,1700410..>1700463))	Theileria parva strain Muguga	3501274
TpMuguga_04g00870	mRNA	TpMuguga_04g00870	NW_876246.1	1700498	1702761	R	TpMuguga_04g00870	complement(join(<1700498..1700563,1700593..1700630,1700660..1700714,1700770..1702761))	Theileria parva strain Muguga	3500896
TpMuguga_04g00871	mRNA	FRS1	NW_876246.1	1702771	1705168	R	TpMuguga_04g00871	complement(join(1702771..1702867,1702936..1703058,1703089..1703224,1703254..1703352,1703383..1703744,1703775..1703932,1704007..1704063,1704094..1704170,1704203..1704349,1704380..1704667,1704700..1704829,1704872..1704980,1705015..1705168))	Theileria parva strain Muguga	3500897
TpMuguga_04g00872	mRNA	TpMuguga_04g00872	NW_876246.1	1705151	1707954	R	TpMuguga_04g00872	complement(1705151..1707954)	Theileria parva strain Muguga	3500898
TpMuguga_04g00873	mRNA	Rabggta	NW_876246.1	1708735	1711287	R	TpMuguga_04g00873	complement(join(1708735..1708927,1708961..1709026,1709057..1709176,1709209..1709352,1709384..1709506,1709540..1709899,1709929..1709988,1710020..1710059,1710089..1710189,1710228..1710450,1710503..1710642,1710673..1711287))	Theileria parva strain Muguga	3500899
TpMuguga_04g02435	mRNA	GNL1	NW_876246.1	1711380	1717967	D	TpMuguga_04g02435	join(1711380..1711941,1711971..1712095,1712126..1712238,1712270..1712378,1712410..1717331,1717496..1717589,1717621..1717967)	Theileria parva strain Muguga	3500788
TpMuguga_04g02320	mRNA	TpMuguga_04g02320	NW_876246.1	1717952	1719216	D	TpMuguga_04g02320	join(<1717952..1718125,1718204..1718285,1718317..1718552,1718686..>1719216)	Theileria parva strain Muguga	3500789
TpMuguga_04g00878	mRNA	ULP2A	NW_876246.1	1719285	1721446	D	TpMuguga_04g00878	join(<1719285..1719953,1720064..1720246,1720278..1720406,1720513..1720848,1720982..1721256,1721285..1721446)	Theileria parva strain Muguga	3500790
TpMuguga_04g00879	mRNA	MPI	NW_876246.1	1721534	1723126	R	TpMuguga_04g00879	complement(join(<1721534..1721791,1721825..1722060,1722139..1723126))	Theileria parva strain Muguga	3500791
TpMuguga_04g00880	mRNA	Dyrk4	NW_876246.1	1723044	1725547	D	TpMuguga_04g00880	join(1723044..1724567,1724664..>1725547)	Theileria parva strain Muguga	3500792
TpMuguga_04g00881	mRNA	Pigq	NW_876246.1	1725590	1727946	D	TpMuguga_04g00881	join(1725590..1725940,1726007..1726146,1726178..1726302,1726331..1726711,1726786..1726954,1726985..1727299,1727333..1727493,1727578..1727762,1727821..>1727946)	Theileria parva strain Muguga	3500580
TpMuguga_04g00882	mRNA	ura2	NW_876246.1	1728126	1729632	D	TpMuguga_04g00882	join(<1728126..1728217,1728401..1728584,1728615..1728680,1728711..1728839,1728866..1729176,1729303..1729363,1729392..1729488,1729517..>1729632)	Theileria parva strain Muguga	3500581
TpMuguga_04g00883	mRNA	gdh2	NW_876246.1	1729744	1733699	R	TpMuguga_04g00883	complement(join(1729744..1731973,1732096..1733391,1733440..1733699))	Theileria parva strain Muguga	3500582
TpMuguga_04g00884	mRNA	TpMuguga_04g00884	NW_876246.1	1734332	1739517	D	TpMuguga_04g00884	join(<1734332..1737217,1737324..1737963,1738038..1738228,1738261..1738386,1738485..1738609,1738644..1738763,1738837..1739337,1739502..1739517)	Theileria parva strain Muguga	3500583
TpMuguga_04g00885	mRNA	TpMuguga_04g00885	NW_876246.1	1739587	1740762	D	TpMuguga_04g00885	<1739587..>1740762	Theileria parva strain Muguga	3500584
TpMuguga_04g00886	mRNA	ZRANB3	NW_876246.1	1741045	1743954	D	TpMuguga_04g00886	join(<1741045..1743469,1743554..>1743954)	Theileria parva strain Muguga	3500585
TpMuguga_04g00887	mRNA	TpMuguga_04g00887	NW_876246.1	1744084	1744734	R	TpMuguga_04g00887	complement(<1744084..>1744734)	Theileria parva strain Muguga	3501360
TpMuguga_04g02680	mRNA	TpMuguga_04g02680	NW_876246.1	1744897	1748769	R	TpMuguga_04g02680	complement(join(1744897..1745250,1745280..1746074,1746105..1746935,1747015..1747086,1747115..1747206,1747347..1747495,1747580..1747671,1747707..1747930,1747960..1748006,1748038..1748311,1748401..1748482,1748561..>1748769))	Theileria parva strain Muguga	3501363
TpMuguga_04g00891	mRNA	HDP	NW_876246.1	1748781	1749409	R	TpMuguga_04g00891	complement(join(<1748781..1749172,1749202..>1749409))	Theileria parva strain Muguga	3501364
TpMuguga_04g00892	mRNA	nhp2l1	NW_876246.1	1750163	1751033	R	TpMuguga_04g00892	complement(join(1750163..1750393,1750492..1750595,1750709..1751033))	Theileria parva strain Muguga	3501365
TpMuguga_04g00893	mRNA	METK2	NW_876246.1	1751063	1752761	D	TpMuguga_04g00893	join(1751063..1751434,1751472..1751724,1751813..1752054,1752119..1752761)	Theileria parva strain Muguga	3500660
TpMuguga_04g00894	mRNA	gatA	NW_876246.1	1752953	1754851	D	TpMuguga_04g00894	join(1752953..1753382,1753414..1753908,1753991..1754320,1754420..1754601,1754634..1754851)	Theileria parva strain Muguga	3500661
TpMuguga_04g02035	mRNA	rnf-5	NW_876246.1	1754939	1755883	D	TpMuguga_04g02035	join(1754939..1755399,1755437..1755500,1755584..1755731,1755765..1755883)	Theileria parva strain Muguga	3500662
TpMuguga_04g02030	mRNA	TpMuguga_04g02030	NW_876246.1	1755927	1756623	D	TpMuguga_04g02030	join(1755927..1756051,1756083..1756136,1756212..1756367,1756397..1756488,1756518..1756568,1756598..1756623)	Theileria parva strain Muguga	86047802
TpMuguga_04g00896	mRNA	TpMuguga_04g00896	NW_876246.1	1756630	1758310	R	TpMuguga_04g00896	complement(join(<1756630..1757990,1758202..>1758310))	Theileria parva strain Muguga	3500663
TpMuguga_04g00897	mRNA	TpMuguga_04g00897	NW_876246.1	1758798	1761282	R	TpMuguga_04g00897	complement(1758798..1761282)	Theileria parva strain Muguga	3500664
TpMuguga_04g00898	mRNA	TpMuguga_04g00898	NW_876246.1	1761283	1764311	R	TpMuguga_04g00898	complement(join(1761283..1761866,1761900..1762108,1762140..1762696,1762727..1763588,1763618..1763851,1763893..1764311))	Theileria parva strain Muguga	3500665
TpMuguga_04g00899	mRNA	TpMuguga_04g00899	NW_876246.1	1764358	1765859	D	TpMuguga_04g00899	join(1764358..1765121,1765196..>1765859)	Theileria parva strain Muguga	3500716
TpMuguga_04g00900	mRNA	TpMuguga_04g00900	NW_876246.1	1765921	1766959	R	TpMuguga_04g00900	complement(1765921..1766959)	Theileria parva strain Muguga	3500717
TpMuguga_04g00901	mRNA	TpMuguga_04g00901	NW_876246.1	1767287	1771572	D	TpMuguga_04g00901	join(<1767287..1770741,1770774..>1771572)	Theileria parva strain Muguga	3500718
TpMuguga_04g02420	mRNA	TpMuguga_04g02420	NW_876246.1	1771522	1772372	R	TpMuguga_04g02420	complement(join(1771522..1771604,1771646..1771898,1771956..1772148,1772180..1772372))	Theileria parva strain Muguga	86047835
TpMuguga_04g00902	mRNA	TpMuguga_04g00902	NW_876246.1	1772786	1775059	D	TpMuguga_04g00902	<1772786..>1775059	Theileria parva strain Muguga	3500719
TpMuguga_04g00903	mRNA	TpMuguga_04g00903	NW_876246.1	1775315	1776079	D	TpMuguga_04g00903	1775315..1776079	Theileria parva strain Muguga	3500720
TpMuguga_04g00904	mRNA	TpMuguga_04g00904	NW_876246.1	1776291	1777018	D	TpMuguga_04g00904	join(1776291..1776804,1776891..1777018)	Theileria parva strain Muguga	3500721
TpMuguga_04g00905	mRNA	TpMuguga_04g00905	NW_876246.1	1777556	1780015	D	TpMuguga_04g00905	1777556..1780015	Theileria parva strain Muguga	3500722
TpMuguga_04g00906	mRNA	Sart3	NW_876246.1	1780195	1783954	R	TpMuguga_04g00906	complement(1780195..1783954)	Theileria parva strain Muguga	3500733
TpMuguga_04g02105	mRNA	TpMuguga_04g02105	NW_876246.1	1784193	1787437	R	TpMuguga_04g02105	complement(1784193..1787437)	Theileria parva strain Muguga	86047810
TpMuguga_04g02390	mRNA	TpMuguga_04g02390	NW_876246.1	1787737	1790326	R	TpMuguga_04g02390	complement(1787737..1790326)	Theileria parva strain Muguga	3500734
TpMuguga_04g00908	mRNA	IMPA1	NW_876246.1	1790575	1792621	R	TpMuguga_04g00908	complement(join(1790575..1790790,1790825..1791439,1791534..1791831,1791922..1792621))	Theileria parva strain Muguga	3500735
TpMuguga_04g00909	mRNA	TpMuguga_04g00909	NW_876246.1	1792715	1793509	R	TpMuguga_04g00909	complement(join(1792715..1793027,1793128..1793303,1793398..1793509))	Theileria parva strain Muguga	3500736
TpMuguga_04g02305	mRNA	TpMuguga_04g02305	NW_876246.1	1793845	1794236	R	TpMuguga_04g02305	complement(join(1793845..1794052,1794150..1794236))	Theileria parva strain Muguga	86047826
TpMuguga_04g02600	mRNA	TpMuguga_04g02600	NW_876246.1	1794300	1794882	D	TpMuguga_04g02600	join(1794300..1794478,1794551..1794638,1794669..1794882)	Theileria parva strain Muguga	86047846
TpMuguga_04g00910	mRNA	TpMuguga_04g00910	NW_876246.1	1794921	1795832	R	TpMuguga_04g00910	complement(1794921..1795832)	Theileria parva strain Muguga	3500737
TpMuguga_04g00911	mRNA	rpb-5	NW_876246.1	1795952	1796788	D	TpMuguga_04g00911	join(<1795952..1796094,1796129..1796236,1796270..1796351,1796441..1796584,1796614..1796688,1796723..>1796788)	Theileria parva strain Muguga	3500738
TpMuguga_04g00912	mRNA	TpMuguga_04g00912	NW_876246.1	1796854	1798269	R	TpMuguga_04g00912	complement(join(1796854..1797478,1797556..1797771,1797808..1798269))	Theileria parva strain Muguga	3500739
TpMuguga_04g00913	mRNA	FES1	NW_876246.1	1798351	1800021	D	TpMuguga_04g00913	join(1798351..1799136,1799169..1799299,1799408..1799586,1799620..1800021)	Theileria parva strain Muguga	3500747
TpMuguga_04g00914	mRNA	ABCC2	NW_876246.1	1800272	1805422	D	TpMuguga_04g00914	<1800272..>1805422	Theileria parva strain Muguga	3500748
TpMuguga_04g00915	mRNA	TpMuguga_04g00915	NW_876246.1	1806111	1807548	D	TpMuguga_04g00915	1806111..>1807548	Theileria parva strain Muguga	3500749
TpMuguga_04g00916	mRNA	TpMuguga_04g00916	NW_876246.1	1808265	1810029	D	TpMuguga_04g00916	<1808265..1810029	Theileria parva strain Muguga	3500750
TpMuguga_04g00917	mRNA	TpMuguga_04g00917	NW_876246.1	1810241	1811887	D	TpMuguga_04g00917	1810241..1811887	Theileria parva strain Muguga	3500751
TpMuguga_04g00918	mRNA	TpMuguga_04g00918	NW_876246.1	1812067	1813472	D	TpMuguga_04g00918	<1812067..1813472	Theileria parva strain Muguga	3500752
TpMuguga_04g00927	mRNA	TpMuguga_04g00927	NW_876246.1	1813699	1815449	D	TpMuguga_04g00927	<1813699..1815449	Theileria parva strain Muguga	3500753
TpMuguga_04g00919	mRNA	TpMuguga_04g00919	NW_876246.1	1815647	1817291	D	TpMuguga_04g00919	1815647..1817291	Theileria parva strain Muguga	3500841
TpMuguga_04g00920	mRNA	TpMuguga_04g00920	NW_876246.1	1817939	1819622	D	TpMuguga_04g00920	<1817939..1819622	Theileria parva strain Muguga	3500842
TpMuguga_04g00928	mRNA	TpMuguga_04g00928	NW_876246.1	1819804	1820675	D	TpMuguga_04g00928	<1819804..1820675	Theileria parva strain Muguga	3500843
TpMuguga_04g00921	mRNA	TpMuguga_04g00921	NW_876246.1	1820902	1821765	D	TpMuguga_04g00921	1820902..>1821765	Theileria parva strain Muguga	3500844
TpMuguga_04g00922	mRNA	TpMuguga_04g00922	NW_876246.1	1822056	1822638	D	TpMuguga_04g00922	join(<1822056..1822122,1822541..>1822638)	Theileria parva strain Muguga	3500845
TpMuguga_04g00929	mRNA	TpMuguga_04g00929	NW_876246.1	1823082	1833620	D	TpMuguga_04g00929	<1823082..1833620	Theileria parva strain Muguga	3500846
TP05_0001	mRNA	TP05_0001	NC_007758.1	4789	5406	D	TP05_0001	<4789..>5406	Theileria parva strain Muguga	3882233
TP05_0002	mRNA	TP05_0002	NC_007758.1	6625	7158	D	TP05_0002	<6625..>7158	Theileria parva strain Muguga	3882291
TP05_0003	mRNA	rpl2	NC_007758.1	7169	7909	D	TP05_0003	<7169..>7909	Theileria parva strain Muguga	3882292
TP05_0004	mRNA	TP05_0004	NC_007758.1	7893	8129	D	TP05_0004	<7893..>8129	Theileria parva strain Muguga	3882293
TP05_0005	mRNA	TP05_0005	NC_007758.1	8122	8820	D	TP05_0005	<8122..>8820	Theileria parva strain Muguga	3882294
TP05_0006	mRNA	TP05_0006	NC_007758.1	8837	9262	D	TP05_0006	<8837..>9262	Theileria parva strain Muguga	3882295
TP05_0007	mRNA	TP05_0007	NC_007758.1	9252	9455	D	TP05_0007	<9252..>9455	Theileria parva strain Muguga	3882296
TP05_0008	mRNA	TP05_0008	NC_007758.1	9448	9810	D	TP05_0008	<9448..>9810	Theileria parva strain Muguga	3882297
TP05_0009	mRNA	TP05_0009	NC_007758.1	9819	10442	D	TP05_0009	<9819..>10442	Theileria parva strain Muguga	3882298
TP05_0010	mRNA	TP05_0010	NC_007758.1	10556	11020	D	TP05_0010	<10556..>11020	Theileria parva strain Muguga	3882265
TP05_0011	mRNA	TP05_0011	NC_007758.1	11020	11355	D	TP05_0011	<11020..>11355	Theileria parva strain Muguga	3882266
TP05_0012	mRNA	TP05_0012	NC_007758.1	11303	11881	D	TP05_0012	<11303..>11881	Theileria parva strain Muguga	3882267
TP05_0013	mRNA	TP05_0013	NC_007758.1	11881	12504	D	TP05_0013	<11881..>12504	Theileria parva strain Muguga	3882268
TP05_0014	mRNA	TP05_0014	NC_007758.1	12525	12830	D	TP05_0014	<12525..>12830	Theileria parva strain Muguga	3882269
TP05_0015	mRNA	TP05_0015	NC_007758.1	12796	12912	D	TP05_0015	<12796..>12912	Theileria parva strain Muguga	3882270
TP05_0016	mRNA	TP05_0016	NC_007758.1	12909	13331	D	TP05_0016	<12909..>13331	Theileria parva strain Muguga	3882271
TP05_0017	mRNA	rps12	NC_007758.1	13343	13717	D	TP05_0017	<13343..>13717	Theileria parva strain Muguga	3882272
TP05_0018	mRNA	TP05_0018	NC_007758.1	13683	14354	D	TP05_0018	<13683..>14354	Theileria parva strain Muguga	3882242
TP05_0019	mRNA	tufA	NC_007758.1	14356	15591	D	TP05_0019	<14356..>15591	Theileria parva strain Muguga	3882243
TP05_0020	mRNA	TP05_0020	NC_007758.1	15703	16104	D	TP05_0020	<15703..>16104	Theileria parva strain Muguga	3882244
TP05_0021	mRNA	TP05_0021	NC_007758.1	16135	16776	D	TP05_0021	<16135..>16776	Theileria parva strain Muguga	3882245
TP05_0022	mRNA	TP05_0022	NC_007758.1	17463	18047	D	TP05_0022	<17463..>18047	Theileria parva strain Muguga	3882250
TP05_0023	mRNA	clpC	NC_007758.1	18205	19713	D	TP05_0023	<18205..>19713	Theileria parva strain Muguga	3882251
TP05_0024	mRNA	clpC	NC_007758.1	19698	21287	D	TP05_0024	<19698..>21287	Theileria parva strain Muguga	3882252
TP05_0025	mRNA	TP05_0025	NC_007758.1	21405	21629	D	TP05_0025	<21405..>21629	Theileria parva strain Muguga	3882254
TP05_0026	mRNA	TP05_0026	NC_007758.1	21622	21915	D	TP05_0026	<21622..>21915	Theileria parva strain Muguga	3882255
TP05_0027	mRNA	TP05_0027	NC_007758.1	21916	22098	D	TP05_0027	<21916..>22098	Theileria parva strain Muguga	3882256
TP05_0028	mRNA	TP05_0028	NC_007758.1	22107	25124	D	TP05_0028	<22107..>25124	Theileria parva strain Muguga	3882257
TP05_0029	mRNA	TP05_0029	NC_007758.1	25135	26739	D	TP05_0029	<25135..>26739	Theileria parva strain Muguga	3882234
TP05_0030	mRNA	TP05_0030	NC_007758.1	27300	27791	D	TP05_0030	<27300..>27791	Theileria parva strain Muguga	3882235
TP05_0031	mRNA	TP05_0031	NC_007758.1	28524	28754	D	TP05_0031	<28524..>28754	Theileria parva strain Muguga	3882236
TP05_0032	mRNA	TP05_0032	NC_007758.1	29117	29641	D	TP05_0032	<29117..>29641	Theileria parva strain Muguga	3882237
TP05_0033	mRNA	TP05_0033	NC_007758.1	29665	29826	D	TP05_0033	<29665..>29826	Theileria parva strain Muguga	3882238
TP05_0034	mRNA	TP05_0034	NC_007758.1	29841	30077	D	TP05_0034	<29841..>30077	Theileria parva strain Muguga	3882239
TP05_0035	mRNA	TP05_0035	NC_007758.1	30353	30877	D	TP05_0035	<30353..>30877	Theileria parva strain Muguga	3882240
TP05_0036	mRNA	TP05_0036	NC_007758.1	30901	31062	D	TP05_0036	<30901..>31062	Theileria parva strain Muguga	3882241
TP05_0037	mRNA	TP05_0037	NC_007758.1	31077	31313	D	TP05_0037	<31077..>31313	Theileria parva strain Muguga	3882258
TP05_0038	mRNA	TP05_0038	NC_007758.1	31592	32083	D	TP05_0038	<31592..>32083	Theileria parva strain Muguga	3882259
TP05_0039	mRNA	TP05_0039	NC_007758.1	32107	32487	D	TP05_0039	<32107..>32487	Theileria parva strain Muguga	3882260
TP05_0040	mRNA	TP05_0040	NC_007758.1	32562	32798	D	TP05_0040	<32562..>32798	Theileria parva strain Muguga	3882261
TP05_0041	mRNA	TP05_0041	NC_007758.1	33076	33600	D	TP05_0041	<33076..>33600	Theileria parva strain Muguga	3882262
TP05_0042	mRNA	TP05_0042	NC_007758.1	33620	34711	D	TP05_0042	<33620..>34711	Theileria parva strain Muguga	3882263
TP05_0043	mRNA	TP05_0043	NC_007758.1	34722	35669	D	TP05_0043	<34722..>35669	Theileria parva strain Muguga	3882264
TP05_0044	mRNA	TP05_0044	NC_007758.1	35682	36374	D	TP05_0044	<35682..>36374	Theileria parva strain Muguga	3882273
TpMuguga_01g01237	tRNA	TpMuguga_01g01237	NC_007344.1	91820	91902	D	tRNA-Tyr	91820..91902	Theileria parva strain Muguga	3503304
TpMuguga_01g01238	tRNA	TpMuguga_01g01238	NC_007344.1	171777	171849	D	tRNA-Phe	171777..171849	Theileria parva strain Muguga	3503415
TpMuguga_01g01239	tRNA	TpMuguga_01g01239	NC_007344.1	172144	172215	D	tRNA-His	172144..172215	Theileria parva strain Muguga	3503416
TpMuguga_01g01240	tRNA	TpMuguga_01g01240	NC_007344.1	250449	250520	R	tRNA-Asp	complement(250449..250520)	Theileria parva strain Muguga	3502477
TpMuguga_01g01241	tRNA	TpMuguga_01g01241	NC_007344.1	251037	251108	R	tRNA-Asp	complement(251037..251108)	Theileria parva strain Muguga	3502478
TpMuguga_01g01242	tRNA	TpMuguga_01g01242	NC_007344.1	852847	852919	D	tRNA-Thr	852847..852919	Theileria parva strain Muguga	3503183
TpMuguga_01g01243	tRNA	TpMuguga_01g01243	NC_007344.1	877291	877362	D	tRNA-Trp	877291..877362	Theileria parva strain Muguga	3502645
TpMuguga_01g01244	tRNA	TpMuguga_01g01244	NC_007344.1	1254968	1255051	R	tRNA-Leu	complement(1254968..1255051)	Theileria parva strain Muguga	3502826
TpMuguga_01g01245	tRNA	TpMuguga_01g01245	NC_007344.1	1468229	1468300	D	tRNA-Cys	1468229..1468300	Theileria parva strain Muguga	3502592
TpMuguga_01g01246	tRNA	TpMuguga_01g01246	NC_007344.1	1633237	1633307	R	tRNA-Gly	complement(1633237..1633307)	Theileria parva strain Muguga	3503517
TpMuguga_01g01247	tRNA	TpMuguga_01g01247	NC_007344.1	2191069	2191149	R	tRNA-Leu	complement(2191069..2191149)	Theileria parva strain Muguga	3503351
TpMuguga_01g01248	tRNA	TpMuguga_01g01248	NC_007344.1	2463713	2463785	R	tRNA-Lys	complement(2463713..2463785)	Theileria parva strain Muguga	3502520
TpMuguga_01g01249	tRNA	TpMuguga_01g01249	NC_007344.1	2506246	2506317	R	tRNA-Pro	complement(2506246..2506317)	Theileria parva strain Muguga	3502390
TpMuguga_01g01250	tRNA	TpMuguga_01g01250	NC_007344.1	2507127	2507198	R	tRNA-Pro	complement(2507127..2507198)	Theileria parva strain Muguga	3502392
TpMuguga_01g01251	tRNA	TpMuguga_01g01251	NC_007344.1	2507459	2507530	D	tRNA-Pro	2507459..2507530	Theileria parva strain Muguga	3502393
TpMuguga_02g00968	tRNA	TpMuguga_02g00968	NC_007345.1	178227	178298	D	tRNA-Ala	178227..178298	Theileria parva strain Muguga	3502247
TpMuguga_02g00969	tRNA	TpMuguga_02g00969	NC_007345.1	179381	179452	R	tRNA-Ala	complement(179381..179452)	Theileria parva strain Muguga	3502249
TpMuguga_02g00970	tRNA	TpMuguga_02g00970	NC_007345.1	226015	226087	D	tRNA-Glu	226015..226087	Theileria parva strain Muguga	3501560
TpMuguga_02g00971	tRNA	TpMuguga_02g00971	NC_007345.1	234319	234391	R	tRNA-Glu	complement(234319..234391)	Theileria parva strain Muguga	3501565
TpMuguga_02g00972	tRNA	TpMuguga_02g00972	NC_007345.1	503887	503959	D	tRNA-Ile	503887..503959	Theileria parva strain Muguga	3502020
TpMuguga_02g00973	tRNA	TpMuguga_02g00973	NC_007345.1	671388	671459	R	tRNA-Thr	complement(671388..671459)	Theileria parva strain Muguga	3501437
TpMuguga_02g00974	tRNA	TpMuguga_02g00974	NC_007345.1	739725	739797	D	tRNA-Ala	739725..739797	Theileria parva strain Muguga	3501536
TpMuguga_02g00975	tRNA	TpMuguga_02g00975	NC_007345.1	1089877	1089950	R	tRNA-Arg	complement(1089877..1089950)	Theileria parva strain Muguga	3502329
TpMuguga_02g00976	tRNA	TpMuguga_02g00976	NC_007345.1	1693688	1693759	D	tRNA-Met	1693688..1693759	Theileria parva strain Muguga	3501592
TpMuguga_03g00935	tRNA	TpMuguga_03g00935	NW_876245.1	228544	228617	D	tRNA-Arg	228544..228617	Theileria parva strain Muguga	3500055
TpMuguga_03g00936	tRNA	TpMuguga_03g00936	NW_876245.1	254819	254890	D	tRNA-Gln	254819..254890	Theileria parva strain Muguga	3500071
TpMuguga_03g00937	tRNA	TpMuguga_03g00937	NW_876245.1	258448	258519	R	tRNA-Gln	complement(258448..258519)	Theileria parva strain Muguga	3500076
TpMuguga_03g00941	tRNA	TpMuguga_03g00941	NW_876245.1	542732	542813	D	tRNA-Ser	542732..542813	Theileria parva strain Muguga	3500216
TpMuguga_03g00942	tRNA	TpMuguga_03g00942	NW_876245.1	543053	543134	D	tRNA-Ser	543053..543134	Theileria parva strain Muguga	3500217
TpMuguga_03g00943	tRNA	TpMuguga_03g00943	NW_876245.1	1277751	1277833	R	tRNA-Leu	complement(1277751..1277833)	Theileria parva strain Muguga	3500449
TpMuguga_03g00934	tRNA	TpMuguga_03g00934	NW_876244.1	31419	31491	D	tRNA-Lys	31419..31491	Theileria parva strain Muguga	3499568
TpMuguga_03g00938	tRNA	TpMuguga_03g00938	NW_876244.1	437053	437125	D	tRNA-Val	437053..437125	Theileria parva strain Muguga	3499765
TpMuguga_03g00939	tRNA	TpMuguga_03g00939	NW_876244.1	437409	437481	D	tRNA-Val	437409..437481	Theileria parva strain Muguga	3499767
TpMuguga_03g00940	tRNA	TpMuguga_03g00940	NW_876244.1	483908	483981	D	tRNA-Ile	483908..483981	Theileria parva strain Muguga	3499792
TpMuguga_04g00930	tRNA	TpMuguga_04g00930	NW_876246.1	80387	80459	R	tRNA-Arg	complement(80387..80459)	Theileria parva strain Muguga	3500949
TpMuguga_04g00931	tRNA	TpMuguga_04g00931	NW_876246.1	80725	80797	D	tRNA-Arg	80725..80797	Theileria parva strain Muguga	3500950
TpMuguga_04g00932	tRNA	TpMuguga_04g00932	NW_876246.1	164049	164130	D	tRNA-Ser	164049..164130	Theileria parva strain Muguga	3500884
TpMuguga_04g00933	tRNA	TpMuguga_04g00933	NW_876246.1	746515	746585	R	tRNA-Gly	complement(746515..746585)	Theileria parva strain Muguga	3501167
TpMuguga_04g00934	tRNA	TpMuguga_04g00934	NW_876246.1	775902	775975	R	tRNA-Met	complement(775902..775975)	Theileria parva strain Muguga	3500969
TpMuguga_04g00935	tRNA	TpMuguga_04g00935	NW_876246.1	888737	888818	D	tRNA-Ser	888737..888818	Theileria parva strain Muguga	3500590
TpMuguga_04g00936	tRNA	TpMuguga_04g00936	NW_876246.1	899628	899700	R	tRNA-Val	complement(899628..899700)	Theileria parva strain Muguga	3501394
TpMuguga_04g00937	tRNA	TpMuguga_04g00937	NW_876246.1	973201	973272	D	tRNA-Thr	973201..973272	Theileria parva strain Muguga	3500805
TpMuguga_04g00938	tRNA	TpMuguga_04g00938	NW_876246.1	1332412	1332485	R	tRNA-Asn	complement(1332412..1332485)	Theileria parva strain Muguga	3501011
TpMuguga_04g00939	tRNA	TpMuguga_04g00939	NW_876246.1	1503376	1503455	R	tRNA-Leu	complement(1503376..1503455)	Theileria parva strain Muguga	3500933
TpMuguga_04g00940	tRNA	TpMuguga_04g00940	NW_876246.1	1503839	1503918	R	tRNA-Leu	complement(1503839..1503918)	Theileria parva strain Muguga	3500934
TpMuguga_04g00941	tRNA	TpMuguga_04g00941	NW_876246.1	1522160	1522231	R	tRNA-Gly	complement(1522160..1522231)	Theileria parva strain Muguga	3501217
TpMuguga_04g00942	tRNA	TpMuguga_04g00942	NW_876246.1	1646389	1646461	R	tRNA-Arg	complement(1646389..1646461)	Theileria parva strain Muguga	3500499
TP05_0047	tRNA	TP05_0047	NC_007758.1	1678	1925	R	tRNA-Phe	complement(1678..1925)	Theileria parva strain Muguga	3882230
TP05_0048	tRNA	TP05_0048	NC_007758.1	4697	4769	D	tRNA-Thr	4697..4769	Theileria parva strain Muguga	3882232
TP05_0049	tRNA	TP05_0049	NC_007758.1	5491	5559	D	tRNA-Gly	5491..5559	Theileria parva strain Muguga	3882282
TP05_0050	tRNA	TP05_0050	NC_007758.1	5623	5693	D	tRNA-His	5623..5693	Theileria parva strain Muguga	3882283
TP05_0051	tRNA	TP05_0051	NC_007758.1	5750	5821	D	tRNA-Met	5750..5821	Theileria parva strain Muguga	3882284
TP05_0052	tRNA	TP05_0052	NC_007758.1	5864	6113	D	tRNA-Lys	5864..6113	Theileria parva strain Muguga	3882285
TP05_0053	tRNA	TP05_0053	NC_007758.1	6171	6242	D	tRNA-Asp	6171..6242	Theileria parva strain Muguga	3882286
TP05_0054	tRNA	TP05_0054	NC_007758.1	6248	6320	D	tRNA-Glu	6248..6320	Theileria parva strain Muguga	3882287
TP05_0055	tRNA	TP05_0055	NC_007758.1	6332	6413	D	tRNA-Tyr	6332..6413	Theileria parva strain Muguga	3882288
TP05_0056	tRNA	TP05_0056	NC_007758.1	6427	6498	D	tRNA-Pro	6427..6498	Theileria parva strain Muguga	3882289
TP05_0057	tRNA	TP05_0057	NC_007758.1	6534	6608	D	tRNA-Ser	6534..6608	Theileria parva strain Muguga	3882290
TP05_0058	tRNA	TP05_0058	NC_007758.1	16777	16847	D	tRNA-Gln	16777..16847	Theileria parva strain Muguga	3882246
TP05_0059	tRNA	TP05_0059	NC_007758.1	16863	16935	D	tRNA-Trp	16863..16935	Theileria parva strain Muguga	3882247
TP05_0060	tRNA	TP05_0060	NC_007758.1	17047	17117	D	tRNA-Cys	17047..17117	Theileria parva strain Muguga	3882248
TP05_0061	tRNA	TP05_0061	NC_007758.1	17284	17357	D	tRNA-Lys	17284..17357	Theileria parva strain Muguga	3882249
TP05_0062	tRNA	TP05_0062	NC_007758.1	21306	21378	D	tRNA-Ser	21306..21378	Theileria parva strain Muguga	3882253
TP05_0063	tRNA	TP05_0063	NC_007758.1	38845	38918	D	tRNA-Asn	38845..38918	Theileria parva strain Muguga	3882274
TP05_0064	tRNA	TP05_0064	NC_007758.1	38942	39013	D	tRNA-Arg	38942..39013	Theileria parva strain Muguga	3882275
TP05_0065	tRNA	TP05_0065	NC_007758.1	39028	39101	D	tRNA-Leu	39028..39101	Theileria parva strain Muguga	3882276
TP05_0066	tRNA	TP05_0066	NC_007758.1	39113	39187	D	tRNA-Phe	39113..39187	Theileria parva strain Muguga	3882277
TP05_0067	tRNA	TP05_0067	NC_007758.1	39237	39307	D	tRNA-Val	39237..39307	Theileria parva strain Muguga	3882278
TP05_0068	tRNA	TP05_0068	NC_007758.1	39331	39400	D	tRNA-Ala	39331..39400	Theileria parva strain Muguga	3882279
TP05_0069	tRNA	TP05_0069	NC_007758.1	39417	39489	D	tRNA-Ile	39417..39489	Theileria parva strain Muguga	3882280
TP05_0070	tRNA	TP05_0070	NC_007758.1	39507	39579	D	tRNA-Arg	39507..39579	Theileria parva strain Muguga	3882281
TpMuguga_01g01234	rRNA	TpMuguga_01g01234	NC_007344.1	916705	922401	R	28S ribosomal RNA	complement(916705..922401)	Theileria parva strain Muguga	3503081
TpMuguga_01g01236	rRNA	TpMuguga_01g01236	NC_007344.1	922979	924722	R	18S ribosomal RNA	complement(922979..924722)	Theileria parva strain Muguga	3503083
TpMuguga_02g00967	rRNA	TpMuguga_02g00967	NC_007345.1	762933	763050	R	5S ribosomal RNA	complement(762933..763050)	Theileria parva strain Muguga	3502028
TpMuguga_02g00387	rRNA	TpMuguga_02g00387	NC_007345.1	769881	769998	R	5S ribosomal RNA	complement(769881..769998)	Theileria parva strain Muguga	86047672
TpMuguga_02g00386	rRNA	TpMuguga_02g00386	NC_007345.1	775140	775257	R	5S ribosomal RNA	complement(775140..775257)	Theileria parva strain Muguga	86047671
TpMuguga_03g00493	rRNA	TpMuguga_03g00493	NW_876245.1	1034463	1034568	R	5S ribosomal RNA	complement(1034463..1034568)	Theileria parva strain Muguga	86047741
TpMuguga_03g00494	rRNA	TpMuguga_03g00494	NW_876245.1	1036777	1036886	R	5S ribosomal RNA	complement(1036777..1036886)	Theileria parva strain Muguga	86047742
TpMuguga_03g00931	rRNA	TpMuguga_03g00931	NW_876244.1	308022	312190	R	28S ribosomal RNA	complement(308022..312190)	Theileria parva strain Muguga	3499697
TpMuguga_03g00933	rRNA	TpMuguga_03g00933	NW_876244.1	312768	314511	R	18S ribosomal RNA	complement(312768..314511)	Theileria parva strain Muguga	3499699
TP05_0045	rRNA	TP05_0045	NC_007758.1	88	1595	D	16S ribosomal RNA	88..1595	Theileria parva strain Muguga	3882229
TP05_0046	rRNA	TP05_0046	NC_007758.1	1905	4680	D	28S ribosomal RNA	1905..4680	Theileria parva strain Muguga	3882231